BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007890
(586 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 585 bits (1509), Expect = e-167, Method: Compositional matrix adjust.
Identities = 280/543 (51%), Positives = 370/543 (68%), Gaps = 5/543 (0%)
Query: 40 ARIRRYKWEVKYEYKSPDCFRKVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIH 99
++IR YKWEV+Y + +P+C +V+ ING+ PGPTI+A D+V+VEL N L TE V IH
Sbjct: 1 SQIRHYKWEVEYMFWAPNCNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIH 60
Query: 100 WHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAHYGMQREAGLYGSIR 159
WHGI Q GTPWADGT ++QC I PGETF Y F VD PGT+ YH H GMQR AGLYGS+
Sbjct: 61 WHGILQRGTPWADGTASISQCAINPGETFFYNFTVDNPGTFFYHGHLGMQRSAGLYGSLI 120
Query: 160 VSLPEGESEPYAYDYDRSIILNDWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRFNC 219
V P+G+ EP+ YD + +++L+DW+H+S +Q GLSS P +W+GEPQ++L+ G+G+F+C
Sbjct: 121 VDPPQGKKEPFHYDGEINLLLSDWWHQSIHKQEVGLSSKPIRWIGEPQTILLNGRGQFDC 180
Query: 220 SSLNSPSLNVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVE 279
S N+ + + C+PY+ V P KTYR+RI+S TAL+AL+F I H + VVE
Sbjct: 181 SIAAKYDSNLEPCKLKGSESCAPYIFHVSPKKTYRIRIASTTALAALNFAIGNHQLLVVE 240
Query: 280 ADGHNVEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNY 339
ADG+ V+PF ++ IYSGE+YSVLI DQNP+ NYW + +R+ TPPGL +LNY
Sbjct: 241 ADGNYVQPFYTSDIDIYSGESYSVLITTDQNPSENYWVSVGTRARHP--NTPPGLTLLNY 298
Query: 340 YPNHPKRSPPTTPPSGPLWNDVGSRLNQSLAIKARKGFIIPPPQSADRMIVMLNTQNNVS 399
PN + P + PP P W+D N + I A G PP +R I +LNTQN ++
Sbjct: 299 LPNSVSKLPTSPPPQTPAWDDFDRSKNFTYRITAAMG-SPKPPVKFNRRIFLLNTQNVIN 357
Query: 400 GNVRWSVNKVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRN 459
G V+W++N V+ LP PYL A+K N+ AFDQ PPP+ + ++YDI + N+ I N
Sbjct: 358 GYVKWAINDVSLALPPTPYLGAMKYNLLHAFDQNPPPEVFP-EDYDIDTPPTNEKTRIGN 416
Query: 460 GVYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLV 519
GVY+ VD+ILQNAN + SETHPWHLHGHDFWVLGYG+GKF + NL
Sbjct: 417 GVYQFKIGEVVDVILQNANMMKENLSETHPWHLHGHDFWVLGYGDGKFSA-EEESSLNLK 475
Query: 520 NPIMKNTVPVHRYGWTALRFRADNPGAWAFHCHIESHFYMGMGVVFAEGIERLGELPSSI 579
NP ++NTV + YGWTA+RF ADNPG WAFHCHIE H +MGMGVVFAEG+E++G +P+
Sbjct: 476 NPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGVEKVGRIPTKA 535
Query: 580 KGC 582
C
Sbjct: 536 LAC 538
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 229 bits (584), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 177/535 (33%), Positives = 244/535 (45%), Gaps = 101/535 (18%)
Query: 55 SPDCFRKVVITINGRTPGPTIQARQNDT----VIVELKNSLLTENVAIHWHGIRQIGTPW 110
SPD F + I +NG GP I+ +ND V+ +L N + +IHWHG+ Q GT W
Sbjct: 17 SPDGFTRAGILVNG-VHGPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNW 75
Query: 111 ADGTEGVTQCPILPGETFTYKFV-VDRPGTYLYHAHYGMQREAGLYGSIRVSLPEGESEP 169
ADG +GV QCPI PG F YKF GT+ YH+H+G Q GL G + + +++P
Sbjct: 76 ADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIY---DDNDP 132
Query: 170 YAYDYDRS-----IILNDWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRFNCSSLNS 224
+A YD I L DW+H + + Q +P + LI GKGR+
Sbjct: 133 HAALYDEDDENTIITLADWYH---------IPAPSIQGAAQPDATLINGKGRY------- 176
Query: 225 PSLNVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHN 284
VG P ++ V GK YR+R+ SL+ F I+GH +T++E DG
Sbjct: 177 ----VG------GPAAELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGEL 226
Query: 285 VEPFVVQNLFIYSGETYSVLIKADQNPTRNYW--ATTNIVSRN---ATFTTPPGLAILNY 339
EP V L I++G+ YS ++ A+Q P NYW A N RN TF AIL Y
Sbjct: 227 TEPHTVDRLQIFTGQRYSFVLDANQ-PVDNYWIRAQPN-KGRNGLAGTFANGVNSAILRY 284
Query: 340 YPNHPKRSPPTTPPSGPLWNDVGSRLNQ----SLAIKARKGFIIPPPQSADRMIVMLNTQ 395
P T+ P ++LN+ +L A G IP P +AD V L Q
Sbjct: 285 A-GAANADPTTSANPNP------AQLNEADLHALIDPAAPG--IPTPGAAD---VNLRFQ 332
Query: 396 NNVSGNVRWSVNKVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSY 455
SG R+++N Y P +P L+ + SA D P
Sbjct: 333 LGFSGG-RFTINGTAYESPSVPTLLQIMSGAQSANDLLP--------------------- 370
Query: 456 TIRNGVYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKK 515
VY L N V++++ + HP+HLHGH F V+
Sbjct: 371 --AGSVYELPRNQVVELVVP-----AGVLGGPHPFHLHGHAFSVVRSAGS--------ST 415
Query: 516 YNLVNPIMKNTVPVHRYG-WTALRFRADNPGAWAFHCHIESHFYMGMGVVFAEGI 569
YN VNP+ ++ V + G +RF DNPG W FHCHIE H G+ +VFAE +
Sbjct: 416 YNFVNPVKRDVVSLGVTGDEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVFAEDM 470
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 229 bits (584), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 177/535 (33%), Positives = 244/535 (45%), Gaps = 101/535 (18%)
Query: 55 SPDCFRKVVITINGRTPGPTIQARQNDT----VIVELKNSLLTENVAIHWHGIRQIGTPW 110
SPD F + I +NG GP I+ +ND V+ +L N + +IHWHG+ Q GT W
Sbjct: 17 SPDGFTRAGILVNG-VHGPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNW 75
Query: 111 ADGTEGVTQCPILPGETFTYKFV-VDRPGTYLYHAHYGMQREAGLYGSIRVSLPEGESEP 169
ADG +GV QCPI PG F YKF GT+ YH+H+G Q GL G + + +++P
Sbjct: 76 ADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIY---DDNDP 132
Query: 170 YAYDYDRS-----IILNDWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRFNCSSLNS 224
+A YD I L DW+H + + Q +P + LI GKGR+
Sbjct: 133 HAALYDEDDENTIITLADWYH---------IPAPSIQGAAQPDATLINGKGRY------- 176
Query: 225 PSLNVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHN 284
VG P ++ V GK YR+R+ SL+ F I+GH +T++E DG
Sbjct: 177 ----VG------GPAAELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGEL 226
Query: 285 VEPFVVQNLFIYSGETYSVLIKADQNPTRNYW--ATTNIVSRN---ATFTTPPGLAILNY 339
EP V L I++G+ YS ++ A+Q P NYW A N RN TF AIL Y
Sbjct: 227 TEPHTVDRLQIFTGQRYSFVLDANQ-PVDNYWIRAQPN-KGRNGLAGTFANGVNSAILRY 284
Query: 340 YPNHPKRSPPTTPPSGPLWNDVGSRLNQ----SLAIKARKGFIIPPPQSADRMIVMLNTQ 395
P T+ P ++LN+ +L A G IP P +AD V L Q
Sbjct: 285 A-GAANADPTTSANPNP------AQLNEADLHALIDPAAPG--IPTPGAAD---VNLRFQ 332
Query: 396 NNVSGNVRWSVNKVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSY 455
SG R+++N Y P +P L+ + SA D P
Sbjct: 333 LGFSGG-RFTINGTAYESPSVPTLLQIMSGAQSANDLLP--------------------- 370
Query: 456 TIRNGVYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKK 515
VY L N V++++ + HP+HLHGH F V+
Sbjct: 371 --AGSVYELPRNQVVELVVP-----AGVLGGPHPFHLHGHAFSVVRSAGS--------ST 415
Query: 516 YNLVNPIMKNTVPVHRYG-WTALRFRADNPGAWAFHCHIESHFYMGMGVVFAEGI 569
YN VNP+ ++ V + G +RF DNPG W FHCHIE H G+ +VFAE +
Sbjct: 416 YNFVNPVKRDVVSLGVTGDEVTIRFVTDNPGPWFFHCHIEFHLMNGLAIVFAEDM 470
>pdb|3KW7|A Chain A, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
pdb|3KW7|B Chain B, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
Length = 502
Score = 214 bits (545), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 173/537 (32%), Positives = 236/537 (43%), Gaps = 104/537 (19%)
Query: 55 SPDCFRKVVITINGRTPGPTIQARQNDT----VIVELKNSLLTENVAIHWHGIRQIGTPW 110
+PD F + + NG PGP I + D VI L N+ + + IHWHG+ Q GT W
Sbjct: 16 TPDGFTRAAVVANGVFPGPLITGNKGDNFQINVIDNLTNATMLKTTTIHWHGLFQHGTNW 75
Query: 111 ADGTEGVTQCPILPGETFTYKFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPEGESEP 169
ADG V QCPI G +F Y F V D+ GT+ YH+H Q GL G + V P S+P
Sbjct: 76 ADGPAFVNQCPIASGNSFLYDFTVPDQAGTFWYHSHLSTQYCDGLRGPLVVYDP---SDP 132
Query: 170 YA--YDYDRS---IILNDWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRF---NCSS 221
YA YD D I L+DW+H +A A + S+LI G GRF N S
Sbjct: 133 YASMYDVDDDTTVITLSDWYHTAAKLGPA--------FPPNADSVLINGLGRFAGGNASD 184
Query: 222 LNSPSLNVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEAD 281
L VITV K YR R+ SL+ +F I+GHNMT++E D
Sbjct: 185 L--------------------AVITVEQNKRYRFRLVSLSCDPNFTFSIDGHNMTIIEVD 224
Query: 282 GHNVEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGL--AILNY 339
G N EP V ++ I++ + YS ++ A Q+ NYW + T T GL AIL Y
Sbjct: 225 GVNHEPLEVDSIQIFASQRYSFVLNATQS-VDNYW--IRAIPNTGTIDTTGGLNSAILRY 281
Query: 340 YPNHPKRSPPTTPPSGPLWNDVGSRLNQSLAIKARKGFIIP---PPQSADRMIVMLNTQN 396
SG D + S+ I + ++P P D ++ ++
Sbjct: 282 --------------SGADIVDPTANATTSV-IPLVETDLVPLDSPAAPGDPVVGGVDLAM 326
Query: 397 NVS---GNVRWSVNKVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENK 453
N+ + +N T P +P L+ + SA D P
Sbjct: 327 NLDFSFNGTNFFINNETLIPPTVPVLLQILSGAQSASDLLP------------------- 367
Query: 454 SYTIRNGVYRLNFNSTVDII--LQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYN 511
VY L NST+++ + N ++N HP+HLHGH F V+ G D
Sbjct: 368 ----TGSVYTLPLNSTIELSFPITTVNGVTNAPGAPHPFHLHGHAFSVV-RSAGSSD--- 419
Query: 512 DPKKYNLVNPIMKNTVPVHRYGW-TALRFRADNPGAWAFHCHIESHFYMGMGVVFAE 567
YN VNP+ ++TV G +RF DN G W HCHI+ H G +VFAE
Sbjct: 420 ----YNYVNPVRRDTVSTGNPGDNVTIRFTTDNAGPWFLHCHIDFHLEAGFAIVFAE 472
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 211 bits (538), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 167/526 (31%), Positives = 231/526 (43%), Gaps = 84/526 (15%)
Query: 55 SPDCFRKVVITINGRTPGPTIQARQND----TVIVELKNSLLTENVAIHWHGIRQIGTPW 110
SPD F + I +N P P I + D VI + N + ++ +IHWHG Q GT W
Sbjct: 16 SPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNW 75
Query: 111 ADGTEGVTQCPILPGETFTYKFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLP-EGESE 168
ADG V QCPI G F Y F V D+ GT+ YH+H Q GL G I V P + +
Sbjct: 76 ADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPNDPHAS 135
Query: 169 PYAYDYDRSII-LNDWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRFNCSSLNSPSL 227
Y D D ++I L DW+H +A A V + LI G GR ++ +L
Sbjct: 136 LYDVDDDSTVITLADWYHLAAKVGAP---------VPTADATLINGLGR------SAATL 180
Query: 228 NVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHNVEP 287
+ VITV GK YR R+ SL+ +F I+GH++TV+EAD N++P
Sbjct: 181 AADLA-----------VITVTKGKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKP 229
Query: 288 FVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNY---YPNHP 344
V +L I++ + YS ++ ADQ+ NYW S F AIL Y P P
Sbjct: 230 HTVDSLQIFAAQRYSFVLNADQD-VDNYWIRALPNSGTQNFAGGTNSAILRYDGAAPVEP 288
Query: 345 KRSPPTTPPSGPLWNDVGSRLNQSLAIKARKGFIIPPPQSADRMIVMLNTQNNVSGNVRW 404
S TP + PL A+ KG P + + + LN +G +
Sbjct: 289 TTS--QTPSTNPLVES---------ALTTLKGTAAPGSPTPGGVDLALNMAFGFAGG-NF 336
Query: 405 SVNKVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRNGVYRL 464
++N ++T P +P L+ + SA D P VY L
Sbjct: 337 TINGASFTPPTVPVLLQILSGAQSAADLLP-----------------------AGSVYSL 373
Query: 465 NFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMK 524
N+ ++I L + + HP+HLHGH F V+ YN NP+ +
Sbjct: 374 PANADIEISLP---ATAAAPGFPHPFHLHGHVFAVVRSAGS--------STYNYANPVYR 422
Query: 525 NTVPVHRYGW-TALRFRADNPGAWAFHCHIESHFYMGMGVVFAEGI 569
+ V G +RFR DNPG W HCHI+ H G VV AE I
Sbjct: 423 DVVSTGAPGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVMAEDI 468
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 124 PGETFTYKFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPE 164
PG+ T +F D PG + H H EAG + +P+
Sbjct: 430 PGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVMAEDIPD 470
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 211 bits (538), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 167/526 (31%), Positives = 231/526 (43%), Gaps = 84/526 (15%)
Query: 55 SPDCFRKVVITINGRTPGPTIQARQND----TVIVELKNSLLTENVAIHWHGIRQIGTPW 110
SPD F + I +N P P I + D VI + N + ++ +IHWHG Q GT W
Sbjct: 16 SPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNW 75
Query: 111 ADGTEGVTQCPILPGETFTYKFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLP-EGESE 168
ADG V QCPI G F Y F V D+ GT+ YH+H Q GL G I V P + +
Sbjct: 76 ADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPNDPHAS 135
Query: 169 PYAYDYDRSII-LNDWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRFNCSSLNSPSL 227
Y D D ++I L DW+H +A A V + LI G GR ++ +L
Sbjct: 136 LYDVDDDSTVITLADWYHLAAKVGAP---------VPTADATLINGLGR------SAATL 180
Query: 228 NVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHNVEP 287
+ VITV GK YR R+ SL+ +F I+GH++TV+EAD N++P
Sbjct: 181 AADLA-----------VITVTKGKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKP 229
Query: 288 FVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNY---YPNHP 344
V +L I++ + YS ++ ADQ+ NYW S F AIL Y P P
Sbjct: 230 HTVDSLQIFAAQRYSFVLNADQD-VDNYWIRALPNSGTQNFAGGTNSAILRYDGAAPVEP 288
Query: 345 KRSPPTTPPSGPLWNDVGSRLNQSLAIKARKGFIIPPPQSADRMIVMLNTQNNVSGNVRW 404
S TP + PL A+ KG P + + + LN +G +
Sbjct: 289 TTS--QTPSTNPLVES---------ALTTLKGTAAPGSPTPGGVDLALNMAFGFAGG-NF 336
Query: 405 SVNKVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRNGVYRL 464
++N ++T P +P L+ + SA D P VY L
Sbjct: 337 TINGASFTPPTVPVLLQILSGAQSAADLLP-----------------------AGSVYSL 373
Query: 465 NFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMK 524
N+ ++I L + + HP+HLHGH F V+ YN NP+ +
Sbjct: 374 PANADIEISLP---ATAAAPGFPHPFHLHGHVFAVVRSAGS--------STYNYANPVYR 422
Query: 525 NTVPVHRYGW-TALRFRADNPGAWAFHCHIESHFYMGMGVVFAEGI 569
+ V G +RFR DNPG W HCHI+ H G VV AE I
Sbjct: 423 DVVSTGAPGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVMAEDI 468
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 124 PGETFTYKFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPE 164
PG+ T +F D PG + H H EAG + +P+
Sbjct: 430 PGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVMAEDIPD 470
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 209 bits (531), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 173/536 (32%), Positives = 240/536 (44%), Gaps = 96/536 (17%)
Query: 55 SPDCFRKVVITINGRTPGPTIQARQND----TVIVELKNSLLTENVAIHWHGIRQIGTPW 110
SPD F + I +N P P I + D VI + N + ++ +IHWHG Q GT W
Sbjct: 16 SPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGFFQHGTNW 75
Query: 111 ADGTEGVTQCPILPGETFTYKFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPEGESEP 169
ADG V QCPI G F Y F V D+ GT+ YH+H Q GL G I V P+ +
Sbjct: 76 ADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPQDPHKS 135
Query: 170 -YAYDYDRSII-LNDWFHRSAFEQAAGLSSIPFQWVGEP----QSLLIQGKGRFNCSSLN 223
Y D D ++I L DW+H +A VG P + LI G GR S++
Sbjct: 136 LYDVDDDSTVITLADWYHLAA-------------KVGSPVPTADATLINGLGR----SID 178
Query: 224 SPSLNVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGH 283
+ LN + VITV GK YR R+ SL+ F I+GH++TV+EAD
Sbjct: 179 T--LNADLA-----------VITVTKGKRYRFRLVSLSCDPNHVFSIDGHSLTVIEADSV 225
Query: 284 NVEPFVVQNLFIYSGETYSVLIKADQNPTRNYW--ATTNIVSRNATFTTPPGLAILNY-- 339
N++P V ++ I++ + YS ++ ADQ+ NYW A N +RN F AIL Y
Sbjct: 226 NLKPQTVDSIQIFAAQRYSFVLNADQD-VGNYWIRALPNSGTRN--FDGGVNSAILRYDG 282
Query: 340 -YPNHPKRSPPTTPPSGPLWNDVGSRLNQSLAIKARKGFIIPPPQSADRMIVMLNTQNNV 398
P P S TP + PL + L + A + P P D + LN
Sbjct: 283 AAPVEPTTS--QTPSTNPLVESALTTLEGTAAPGS------PAPGGVD---LALNMAFGF 331
Query: 399 SGNVRWSVNKVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIR 458
+G ++++N ++T P +P L+ + SA D P
Sbjct: 332 AGG-KFTINGASFTPPTVPVLLQILSGAQSAQDLLP-----------------------S 367
Query: 459 NGVYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNL 518
VY L N+ ++I L + + HP+HLHGH F V+ YN
Sbjct: 368 GSVYSLPANADIEISLP---ATAAAPGFPHPFHLHGHTFAVVRSAGS--------STYNY 416
Query: 519 VNPIMKNTVPVHRYGW-TALRFRADNPGAWAFHCHIESHFYMGMGVVFAEGIERLG 573
NP+ ++ V G +RFR DNPG W HCHI+ H G VV AE I +
Sbjct: 417 ENPVYRDVVSTGSPGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVMAEDIPEVA 472
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 163/532 (30%), Positives = 236/532 (44%), Gaps = 87/532 (16%)
Query: 55 SPDCFRKVVITINGRTPGPTIQARQND----TVIVELKNSLLTENVAIHWHGIRQIGTPW 110
SPD F + I +NG P P I ++ D V+ L N + ++ +IHWHG Q GT W
Sbjct: 16 SPDGFLRDAIVVNGVFPSPLITGKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFFQAGTNW 75
Query: 111 ADGTEGVTQCPILPGETFTYKF-VVDRPGTYLYHAHYGMQREAGLYGSIRVSLPEGESEP 169
ADG V QCPI G +F Y F V D+ GT+ YH+H Q GL G V P+ +P
Sbjct: 76 ADGPAFVNQCPIASGHSFLYDFHVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPK---DP 132
Query: 170 YAYDYDRS-----IILNDWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRFNCSSLNS 224
+A YD I L DW+H +A + ++ + LI G GR
Sbjct: 133 HASRYDVDNESTVITLTDWYHTAA--------RLGPRFPLGADATLINGLGR-------- 176
Query: 225 PSLNVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHN 284
+ + P + VI V GK YR R+ S++ +F I+GHN+TV+E DG N
Sbjct: 177 ---------SASTPTAALAVINVQHGKRYRFRLVSISCDPNYTFSIDGHNLTVIEVDGIN 227
Query: 285 VEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNYYPNHP 344
+P +V ++ I++ + YS ++ A+Q NYW N F AIL Y
Sbjct: 228 SQPLLVDSIQIFAAQRYSFVLNANQT-VGNYWIRANPNFGTVGFAGGINSAILRY----- 281
Query: 345 KRSPPTTPPSGPLWNDVGSRLNQSLAIKARKGFI-IPPPQSADRMIVMLNTQNNVSGNVR 403
+ P P+ V + +L AR P P D+ LN N +G
Sbjct: 282 -QGAPVAEPTTTQTTSVIPLIETNLHPLARMPVPGSPTPGGVDK---ALNLAFNFNG-TN 336
Query: 404 WSVNKVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRNGVYR 463
+ +N ++T P +P L+ + +A D P VY
Sbjct: 337 FFINNASFTPPTVPVLLQILSGAQTAQDLLP-----------------------AGSVYP 373
Query: 464 LNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVN--- 520
L +ST++I L A +L+ HP+HLHGH F V+ YNDP ++V+
Sbjct: 374 LPAHSTIEITLP-ATALA--PGAPHPFHLHGHAFAVVRSAGSTTYNYNDPIFRDVVSTGT 430
Query: 521 PIMKNTVPVHRYGWTALRFRADNPGAWAFHCHIESHFYMGMGVVFAEGIERL 572
P + V +RF+ DNPG W HCHI+ H G +VFAE + +
Sbjct: 431 PAAGDNV--------TIRFQTDNPGPWFLHCHIDFHLEAGFAIVFAEDVADV 474
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 205 bits (522), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 166/530 (31%), Positives = 230/530 (43%), Gaps = 79/530 (14%)
Query: 55 SPDCFRKVVITINGRTPGPTIQARQND----TVIVELKNSLLTENVAIHWHGIRQIGTPW 110
SPD F + + +NG TPGP I D VI L N + ++ +IHWHG Q GT W
Sbjct: 16 SPDGFSRQAVVVNGGTPGPLITGNMGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQKGTNW 75
Query: 111 ADGTEGVTQCPILPGETFTYKFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLP-EGESE 168
ADG + QCPI G +F Y F V D+ GT+ YH+H Q GL G V P + ++
Sbjct: 76 ADGPAFINQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPAAD 135
Query: 169 PYAYDYDRSII-LNDWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRFNCSSLNSPSL 227
Y D D ++I L DW+H +A A P + LI GKGR SPS
Sbjct: 136 LYDVDNDDTVITLVDWYHVAAKLGPA----FPLG----ADATLINGKGR-------SPST 180
Query: 228 NVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHNVEP 287
+ VI+V PGK YR R+ SL+ +F I+GHNMT++E D N P
Sbjct: 181 TTADLS----------VISVTPGKRYRFRLVSLSCDPNYTFSIDGHNMTIIETDSINTAP 230
Query: 288 FVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNYYPNHPKRS 347
VV ++ I++ + YS +++A+Q NYW N N FT AIL Y
Sbjct: 231 LVVDSIQIFAAQRYSFVLEANQ-AVDNYWIRANPNFGNVGFTGGINSAILRYDGAAAVEP 289
Query: 348 PPTTPPSGPLWNDVGSRLNQSLAIKARKGFIIPPPQSADRMIVMLNTQNNVSGNVRWSVN 407
T S N+V L+ +A +P A + + +N N +G + +N
Sbjct: 290 TTTQTTSTAPLNEV--NLHPLVATA------VPGSPVAGGVDLAINMAFNFNG-TNFFIN 340
Query: 408 KVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRNGVYRLNFN 467
++T P +P L+ + +A D P VY L N
Sbjct: 341 GASFTPPTVPVLLQIISGAQNAQDLLP-----------------------SGSVYSLPSN 377
Query: 468 STVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTV 527
+ ++I + +HLHGH F V+ YN NPI ++ V
Sbjct: 378 ADIEISFPATAAAPGAPHP---FHLHGHAFAVVRSAGSTV--------YNYDNPIFRDVV 426
Query: 528 PVHRYGW---TALRFRADNPGAWAFHCHIESHFYMGMGVVFAEGIERLGE 574
+RFR DNPG W HCHI+ H G VVFAE I +
Sbjct: 427 STGTPAAGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVFAEDIPDVAS 476
>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The
Ligninolytic Fungus Pycnoporus Cinnabarinus
Length = 497
Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 168/524 (32%), Positives = 230/524 (43%), Gaps = 83/524 (15%)
Query: 55 SPDCFRKVVITINGRTPGPTIQARQND----TVIVELKNSLLTENVAIHWHGIRQIGTPW 110
SPD F + + +NG TP P I + D VI +L N + + +IHWHG Q GT W
Sbjct: 16 SPDGFAREAVVVNGITPAPLITGNKGDRFQLNVIDQLTNHTMLKTSSIHWHGFFQQGTNW 75
Query: 111 ADGTEGVTQCPILPGETFTYKFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLP-EGESE 168
ADG V QCPI G +F Y F V D+ GT+ YH+H Q GL G V P + +
Sbjct: 76 ADGPAFVNQCPIASGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHAS 135
Query: 169 PYAYDYDRSII-LNDWFHRSAFEQAAGLSS-IPFQWVGEPQSLLIQGKGRFNCSSLNSPS 226
Y D D ++I L DW+H AA L PF S LI G GR
Sbjct: 136 LYDIDNDDTVITLADWYHV-----AAKLGPRFPFG----SDSTLINGLGR---------- 176
Query: 227 LNVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHNVE 286
GI ++ VI V GK YR R+ SL+ +F I+ H MT++EAD N +
Sbjct: 177 -TTGIAPSDL------AVIKVTQGKRYRFRLVSLSCDPNHTFSIDNHTMTIIEADSINTQ 229
Query: 287 PFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNYYPNHPKR 346
P V ++ I++ + YS ++ A Q P NYW N N F AIL Y P+
Sbjct: 230 PLEVDSIQIFAAQRYSFVLDASQ-PVDNYWIRANPAFGNTGFAGGINSAILR-YDGAPEI 287
Query: 347 SPPT--TPPSGPLWNDVGSRLNQSLAIKARKGFIIPPPQSADRMIVMLNTQNNVSGNVRW 404
P + T P+ PL N+V + + P P D+ LN N +G +
Sbjct: 288 EPTSVQTTPTKPL-NEVDLHPLSPMPVPGS-----PEPGGVDK---PLNLVFNFNG-TNF 337
Query: 405 SVNKVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRNGVYRL 464
+N T+ P +P L+ + +A D P V+ L
Sbjct: 338 FINDHTFVPPSVPVLLQILSGAQAAQDLVP-----------------------EGSVFVL 374
Query: 465 NFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMK 524
NS+++I + +N HP+HLHGH F V+ YN NPI +
Sbjct: 375 PSNSSIEISFP---ATANAPGFPHPFHLHGHAFAVVRSAGSSV--------YNYDNPIFR 423
Query: 525 NTVPVHRYGW-TALRFRADNPGAWAFHCHIESHFYMGMGVVFAE 567
+ V + G +RF +NPG W HCHI+ H G VV AE
Sbjct: 424 DVVSTGQPGDNVTIRFETNNPGPWFLHCHIDFHLDAGFAVVMAE 467
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 163/528 (30%), Positives = 226/528 (42%), Gaps = 88/528 (16%)
Query: 56 PDCFRKVVITINGRTPGPTIQARQNDTVIVELKNSL----LTENVAIHWHGIRQIGTPWA 111
PD F + + G PGP I D + N L + + +IHWHG Q GT WA
Sbjct: 18 PDGFVRPAVNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWA 77
Query: 112 DGTEGVTQCPILPGETFTYKF-VVDRPGTYLYHAHYGMQREAGLYGSIRVSLP-EGESEP 169
DG +TQCPI+ G +F+Y F V GTY YH+H Q GL G V P + ++
Sbjct: 78 DGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPNDPDANL 137
Query: 170 YAYDYDRSII-LNDWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRFNCSSLNSPSLN 228
Y D D +II L DW+H A E AG + S LI G GR + + P
Sbjct: 138 YDVDDDTTIITLADWYHVLAKEMGAGGAI-------TADSTLIDGLGRTHVNVAAVPL-- 188
Query: 229 VGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHNVEPF 288
VITV GK YR+R+ S++ F I+GH+MT++E DG + +
Sbjct: 189 --------------SVITVEVGKRYRMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQEL 234
Query: 289 VVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNYYPNHPKRSP 348
V + I++ + YS ++ A+Q P NYW N S F AIL Y + +
Sbjct: 235 TVDEIQIFAAQRYSFVLNANQ-PVGNYWIRANPNSGGEGFDGGINSAILRY--DGATTAD 291
Query: 349 PTTPPSGPLWNDVGSRLNQSLAIK------ARKGFIIPPPQSADRMIVMLNTQNNVSGNV 402
P T V S ++ I+ +R G P Q + L + GN
Sbjct: 292 PVT---------VASTVHTKCLIETDLHPLSRNGVPGNPHQGGADCNLNL-SLGFACGN- 340
Query: 403 RWSVNKVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRNGVY 462
+ +N V++T P +P L+ + +A D P V
Sbjct: 341 -FVINGVSFTPPTVPVLLQICSGANTAADLLP-----------------------SGSVI 376
Query: 463 RLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPI 522
L NST++I L + HP+HLHGHDF V Y+D PI
Sbjct: 377 SLPSNSTIEIALP-----AGAAGGPHPFHLHGHDFAVSESASNSTSNYDD--------PI 423
Query: 523 MKNTVPVHRYGW-TALRFRADNPGAWAFHCHIESHFYMGMGVVFAEGI 569
++ V + G +RF DNPG W HCHI+ H G +VFAE I
Sbjct: 424 WRDVVSIGGVGDNVTIRFCTDNPGPWFLHCHIDWHLDAGFAIVFAEDI 471
>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
pdb|2QT6|B Chain B, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
Length = 498
Score = 194 bits (493), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 155/532 (29%), Positives = 227/532 (42%), Gaps = 96/532 (18%)
Query: 56 PDCFRKVVITINGRTPGPTIQARQNDT----VIVELKNSLLTENVAIHWHGIRQIGTPWA 111
PD F + I +N P P I D ++ ++ N + + +IHWHG Q GT WA
Sbjct: 17 PDGFERAAIVVNNVFPAPLITGNMGDNFQLNLVNQMTNHTMLKTTSIHWHGFFQKGTNWA 76
Query: 112 DGTEGVTQCPILPGETFTYKFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPEGESEPY 170
DG + QCPI G +F Y F V + GT+ YH+H Q GL G V P ++P+
Sbjct: 77 DGPAFINQCPIASGNSFLYDFQVPGQAGTFWYHSHLSTQYCDGLRGPFVVYDP---NDPH 133
Query: 171 A--YDYDRS---IILNDWFHRSA-----FEQAAGLSSIPFQWVGEPQSLLIQGKGRFNCS 220
A YD D I L DW+H +A F + A S LI G GR
Sbjct: 134 ANLYDVDDESTVITLADWYHVAAKLGPRFPKGA-------------DSTLINGLGR---- 176
Query: 221 SLNSPSLNVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEA 280
S ++P+ ++ VI+V GK YR R+ SL+ +F I+ H +TV+EA
Sbjct: 177 STSTPTADLA-------------VISVTKGKRYRFRLVSLSCDPNYTFSIDSHQLTVIEA 223
Query: 281 DGHNVEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNYY 340
DG + +P V ++ I++ + YS ++ A+Q+ NYW N F AIL Y
Sbjct: 224 DGVSTQPVTVDSIQIFAAQRYSFVLNANQD-VDNYWIRANPNFGTTGFADGVNSAILRYD 282
Query: 341 PNHPKRSPPTTPPSGPLWNDVGSRLNQSLAIKARKGFIIPPPQSADRMIVMLNTQNNVSG 400
P P+ N G+ L + +P + + LN N G
Sbjct: 283 DADPVE---------PVTNQTGTTLLLETDLHPLTSMPVPGNPTQGGADLNLNMAFNFDG 333
Query: 401 NVRWSVNKVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRNG 460
+ +N ++T P +P L+ + +A D P
Sbjct: 334 -TNFFINGESFTPPTVPVLLQIISGANTAQDLLP-----------------------SGS 369
Query: 461 VYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVN 520
VY L NS+++I + + HP+HLHGH F V+ Y+DP ++V+
Sbjct: 370 VYSLPSNSSIEITFP---ATTAAPGAPHPFHLHGHVFAVVRSAGSTSYNYDDPVWRDVVS 426
Query: 521 ---PIMKNTVPVHRYGWTALRFRADNPGAWAFHCHIESHFYMGMGVVFAEGI 569
P + V +RF+ DNPG W HCHI+ H G VV AE I
Sbjct: 427 TGTPQAGDNV--------TIRFQTDNPGPWFLHCHIDFHLDAGFAVVMAEDI 470
>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
Length = 499
Score = 192 bits (489), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 155/531 (29%), Positives = 228/531 (42%), Gaps = 95/531 (17%)
Query: 55 SPDCFRKVVITINGRTPGPTIQARQND----TVIVELKNSLLTENVAIHWHGIRQIGTPW 110
SPD F + + +NG TPGP + D VI L N + ++ +IHWHG Q GT W
Sbjct: 16 SPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNW 75
Query: 111 ADGTEGVTQCPILPGETFTYKFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLP-EGESE 168
ADG + QCPI PG +F Y F V D+ GT+ YH+H Q GL G V P + +
Sbjct: 76 ADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHAS 135
Query: 169 PYAYDYDRSII-LNDWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRFNCSSLNSPSL 227
Y D D ++I L DW+H +A + ++ G + LI GKGR +PS
Sbjct: 136 RYDVDNDDTVITLADWYHTAA--------KLGPRFPGGADATLINGKGR-------APSD 180
Query: 228 NVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHNVEP 287
+V + VI V GK YR R+ SL+ +F I+GHN+T++E D N +P
Sbjct: 181 SVAELS----------VIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQP 230
Query: 288 FVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNYYPNHPKRS 347
V ++ I++ + YS ++ A+Q NYW N N F AIL Y +
Sbjct: 231 LEVDSIQIFAAQRYSFVLDANQ-AVDNYWIRANPNFGNVGFDGGINSAILRY-----DGA 284
Query: 348 PPTTPPSGPLWNDVGSRLNQSLAIKARKGFI--------IPPPQSADRMIVMLNTQNNVS 399
P P + NQ+ ++K +P S+ + +N N +
Sbjct: 285 PAVEPTT-----------NQTTSVKPLNEVDLHPLVSTPVPGAPSSGGVDKAINMAFNFN 333
Query: 400 GNVRWSVNKVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRN 459
G+ + +N ++ P +P L+ + +A D P
Sbjct: 334 GS-NFFINGASFVPPTVPVLLQILSGAQTAQDLLP-----------------------SG 369
Query: 460 GVYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLV 519
VY L N++++I + +HLHGH F V+ YN
Sbjct: 370 SVYVLPSNASIEISFPATAAAPGAPHP---FHLHGHTFAVVRSAGSTV--------YNYD 418
Query: 520 NPIMKNTVPVHRYGW---TALRFRADNPGAWAFHCHIESHFYMGMGVVFAE 567
NPI ++ V +RF +NPG W HCHI+ H G VV AE
Sbjct: 419 NPIFRDVVSTGTPAAGDNVTIRFDTNNPGPWFLHCHIDFHLEGGFAVVMAE 469
>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
Low Dose Of Ionization Radiation
Length = 499
Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 155/531 (29%), Positives = 228/531 (42%), Gaps = 95/531 (17%)
Query: 55 SPDCFRKVVITINGRTPGPTIQARQND----TVIVELKNSLLTENVAIHWHGIRQIGTPW 110
SPD F + + +NG TPGP + D VI L N + ++ +IHWHG Q GT W
Sbjct: 16 SPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNW 75
Query: 111 ADGTEGVTQCPILPGETFTYKFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLP-EGESE 168
ADG + QCPI PG +F Y F V D+ GT+ YH+H Q GL G V P + +
Sbjct: 76 ADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHAS 135
Query: 169 PYAYDYDRSII-LNDWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRFNCSSLNSPSL 227
Y D D ++I L DW+H +A + ++ G + LI GKGR +PS
Sbjct: 136 RYDVDNDDTVITLADWYHTAA--------KLGPRFPGGADATLINGKGR-------APSD 180
Query: 228 NVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHNVEP 287
+V + VI V GK YR R+ SL+ +F I+GHN+T++E D N +P
Sbjct: 181 SVAELS----------VIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQP 230
Query: 288 FVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNYYPNHPKRS 347
V ++ I++ + YS ++ A+Q NYW N N F AIL Y +
Sbjct: 231 LEVDSIQIFAAQRYSFVLDANQ-AVDNYWIRANPNFGNVGFDGGINSAILRY-----DGA 284
Query: 348 PPTTPPSGPLWNDVGSRLNQSLAIKARKGFI--------IPPPQSADRMIVMLNTQNNVS 399
P P + NQ+ ++K +P S+ + +N N +
Sbjct: 285 PAVEPTT-----------NQTTSVKPLNEVDLHPLVSTPVPGSPSSGGVDKAINMAFNFN 333
Query: 400 GNVRWSVNKVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRN 459
G+ + +N ++ P +P L+ + +A D P
Sbjct: 334 GS-NFFINGASFVPPTVPVLLQILSGAQTAQDLLP-----------------------SG 369
Query: 460 GVYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLV 519
VY L N++++I + +HLHGH F V+ YN
Sbjct: 370 SVYVLPSNASIEISFPATAAAPGAPHP---FHLHGHTFAVVRSAGSTV--------YNYD 418
Query: 520 NPIMKNTVPVHRYGW---TALRFRADNPGAWAFHCHIESHFYMGMGVVFAE 567
NPI ++ V +RF +NPG W HCHI+ H G VV AE
Sbjct: 419 NPIFRDVVSTGTPAAGDNVTIRFDTNNPGPWFLHCHIDFHLEGGFAVVMAE 469
>pdb|1V10|A Chain A, Structure Of Rigidoporus Lignosus Laccase From
Hemihedrally Twinned Crystals
Length = 521
Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 171/581 (29%), Positives = 247/581 (42%), Gaps = 111/581 (19%)
Query: 13 FRGMKILNLLALCVLIFSLANIVPMAEARIRRYKWEVKYEYKSPD-CFRKVVITINGRTP 71
F +K L +L+L L SLA V + + PD + +T G T
Sbjct: 4 FASLKSLVVLSLTSL--SLAATVAL--------DLHILNANLDPDGTGARSAVTAEGTTI 53
Query: 72 GPTIQARQND----TVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGET 127
P I +D VI +L ++ + +IHWHG Q GT DG V QCPI+P E+
Sbjct: 54 APLITGNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDGPAFVNQCPIIPNES 113
Query: 128 FTYKFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPEGESEPYAYDYDRS---IILNDW 183
F Y FVV + GTY YH+H Q GL G+ V P + YD D + I + DW
Sbjct: 114 FVYDFVVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDPN-DPHLSLYDVDDASTVITIADW 172
Query: 184 FHRSAFEQAAGLSSIPFQWVGEP----QSLLIQGKGRFNCSSLNSPSLNVGIICNETNPE 239
+H LS++ F + + LI G GR N NP
Sbjct: 173 YHS--------LSTVLFPNPNKAPPAPDTTLINGLGR-----------------NSANPS 207
Query: 240 CSPY-VITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHNVEPFVVQNLFIYSG 298
V++V GK YR RI S + +F I+GH MTV+E DG + +P V +L I++G
Sbjct: 208 AGQLAVVSVQSGKRYRFRIVSTSCFPNYAFSIDGHRMTVIEVDGVSHQPLTVDSLTIFAG 267
Query: 299 ETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNYYPNHPKRSPPTTPPSGPLW 358
+ YSV+++A+Q NYW N + FT AI Y + PTT
Sbjct: 268 QRYSVVVEANQ-AVGNYWIRANPSNGRNGFTGGINSAIFRY--QGAAVAEPTTS------ 318
Query: 359 NDVGSRLNQS----LAIKARKGFIIPPPQSADRMIVMLNTQNNVSGNVRWSVNKVTYTLP 414
+ G+ LN++ L G P P AD + + +N + + +++N + P
Sbjct: 319 QNSGTALNEANLIPLINPGAPGN--PVPGGADINLNLRIGRNATTAD--FTINGAPFIPP 374
Query: 415 HIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRNGVYRLNFNSTVDIIL 474
+P L+ + +T+ D P V L N ++I +
Sbjct: 375 TVPVLLQILSGVTNPNDLLP-----------------------GGAVISLPANQVIEISI 411
Query: 475 QNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKK--YNLVNPIMKNTVPVHRY 532
+ HP+HLHGH+ FD+ P YN VNP+ ++ V +
Sbjct: 412 PGGGN--------HPFHLHGHN----------FDVVRTPGSSVYNYVNPVRRDVVSIGGG 453
Query: 533 GW-TALRFRADNPGAWAFHCHIESHFYMGMGVVFAEGIERL 572
G RF DNPG W HCHI+ H G+ VVFAE I +
Sbjct: 454 GDNVTFRFVTDNPGPWFLHCHIDWHLEAGLAVVFAEDIPNI 494
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 157/531 (29%), Positives = 228/531 (42%), Gaps = 85/531 (16%)
Query: 57 DCFRKVVITINGRTPGPTIQARQND----TVIVELKNSLLTENVAIHWHGIRQIGTPWAD 112
D + + +NG TPGP I + D VI L N + ++ ++HWHG Q GT WAD
Sbjct: 18 DGHSRDAVVVNGGTPGPLITGNKGDQFQLNVINNLTNFTMLKSTSVHWHGFFQKGTNWAD 77
Query: 113 GTEGVTQCPILPGETFTYKFVVD-RPGTYLYHAHYGMQREAGLYGSIRVSLPEGESEPYA 171
G V QCPI G +F Y F + GT+ YH+H Q G G V P S
Sbjct: 78 GPAFVNQCPIAAGSSFLYDFSTPIQAGTFWYHSHLSTQYCDGDRGPFVVYDPNDPSANL- 136
Query: 172 YDYDR---SIILNDWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRFNCSSLNSPSLN 228
YD D I L DW+H +A A G + LI G+GR
Sbjct: 137 YDVDNLNTVITLTDWYHTAAQNGPAK--------PGGADATLINGQGR------------ 176
Query: 229 VGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHNVEPF 288
++P VI+V GK YR R+ S + +F I+GH MT+++ D NV+P
Sbjct: 177 -----GPSSPSADLAVISVTAGKRYRFRLVSNSCDPNYTFSIDGHQMTIIQVDSINVQPL 231
Query: 289 VVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNYYPNHPKRSP 348
VV + IY+ + YS ++ A+Q NYW N N FT AIL Y + +
Sbjct: 232 VVLKIQIYAAQRYSFILNANQ-AVNNYWIRANPNQGNVGFTNGINSAILRY--SGAAATQ 288
Query: 349 PTTPPSGPLWNDVGSRLNQSLAIKARKGFIIPPPQSADRMIVMLNTQNNVSGNVRWSVNK 408
PTT + + L+Q+ + +P A + + +N N +G + V+
Sbjct: 289 PTTSQTSSV-----QPLDQT-NLHPLTATAVPGSPVAGGVNLAINQAFNFNGTNHF-VDG 341
Query: 409 VTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRNG-VYRLNFN 467
++ P +P L I S A++ + + +G VY L +
Sbjct: 342 ASFVPPTVPVL------------------------SQIVSGAQSAADLLASGLVYSLPSD 377
Query: 468 STVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTV 527
+ ++I + S HP+HLHGH F V+ YNDP I ++TV
Sbjct: 378 ANIEISFP---ATSAAAGGPHPFHLHGHAFAVVRSAGSTTYNYNDP--------IFRDTV 426
Query: 528 ----PVHRYGWTALRFRADNPGAWAFHCHIESHFYMGMGVVFAEGIERLGE 574
P T +RF+ +NPG W HCHI+ H G VVFA+ I +
Sbjct: 427 STGTPAANDNVT-IRFKTNNPGPWFLHCHIDFHLEAGFAVVFAQDIPDVAS 476
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 186 bits (471), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 152/533 (28%), Positives = 227/533 (42%), Gaps = 95/533 (17%)
Query: 55 SPDCFRKVVITINGRTPGPTIQARQND----TVIVELKNSLLTENVAIHWHGIRQIGTPW 110
SPD F + + +NG TPGP + D VI L N + + ++HWHG Q GT W
Sbjct: 16 SPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFFQQGTNW 75
Query: 111 ADGTEGVTQCPILPGETFTYKFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLP-EGESE 168
ADG + QCPI PG +F Y F V ++ GT+ YH+H Q GL G V P + +
Sbjct: 76 ADGPAFINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHAS 135
Query: 169 PYAYDYDRSII-LNDWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRFNCSSLNSPSL 227
Y D D ++I L DW+H +A + ++ + LI GKGR +PS
Sbjct: 136 RYDVDNDDTVITLADWYHTAA--------KLGPRFPAGADATLINGKGR-------APS- 179
Query: 228 NVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHNVEP 287
+T+ E S VI V GK R R+ SL+ +F I+GHN+T++E D N +P
Sbjct: 180 -------DTSAELS--VIKVTKGKRXRFRLVSLSCDPNFTFSIDGHNLTIIEVDSSNSQP 230
Query: 288 FVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNYYPNHPKRS 347
V ++ I++ + YS ++ A+Q NYW N N F AIL Y +
Sbjct: 231 LSVDSIQIFAAQRYSFVLNANQ-AVDNYWIRANPNFGNVGFNGGINSAILRY-----DGA 284
Query: 348 PPTTPPSGPLWNDVGSRLNQSLAIKARK--------GFIIPPPQSADRMIVMLNTQNNVS 399
P P + NQ+ ++K +P S+ + +N N +
Sbjct: 285 PAVEPTT-----------NQTTSVKPLNEVNLHPLVSTPVPGSPSSGGVDKAINMAFNFN 333
Query: 400 GNVRWSVNKVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRN 459
G+ + +N ++ P +P L+ + +A D P
Sbjct: 334 GS-NFFINGASFVPPSVPVLLQILSGAQTAQDLLP-----------------------SG 369
Query: 460 GVYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLV 519
V L N++++I + +HLHGH F V+ YN
Sbjct: 370 SVXVLPSNASIEISFPATAAAPGAPHP---FHLHGHTFAVVRSAGSTV--------YNYS 418
Query: 520 NPIMKNTVPVHRYGW---TALRFRADNPGAWAFHCHIESHFYMGMGVVFAEGI 569
NPI ++ V +RF +NPG W HCHI+ H G VV AE +
Sbjct: 419 NPIFRDVVSTGTPAAGDNVTIRFLTNNPGPWFLHCHIDFHLEGGFAVVQAEDV 471
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 152/528 (28%), Positives = 225/528 (42%), Gaps = 85/528 (16%)
Query: 55 SPDCFRKVVITINGRTPGPTIQARQND----TVIVELKNSLLTENVAIHWHGIRQIGTPW 110
SPD F + + +NG TPGP + D VI L N + + ++HWHG Q GT W
Sbjct: 16 SPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFFQQGTNW 75
Query: 111 ADGTEGVTQCPILPGETFTYKFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPEGESEP 169
ADG + QCPI PG +F Y F V ++ GT+ YH+H Q GL G V P ++P
Sbjct: 76 ADGPAFINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDP---NDP 132
Query: 170 YAYDY-----DRSIILNDWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRFNCSSLNS 224
+A Y D +I L DW+H +A A + S LI GKGR +
Sbjct: 133 HASRYDVDNDDTTITLADWYHTAAKLGPA--------FPNGADSTLINGKGR-------A 177
Query: 225 PSLNVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHN 284
PS +++ + S V++V GK R R+ SL+ +F I+GHN T++E D N
Sbjct: 178 PS--------DSSAQLS--VVSVTKGKRXRFRLVSLSCDPNFTFSIDGHNNTIIETDSVN 227
Query: 285 VEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNYYPNHP 344
+P ++ I++ + YS + A+Q NYW N N F AIL Y P
Sbjct: 228 SQPLNTDSIQIFAAQRYSFTLNANQ-AVDNYWIRANPNFGNVGFNGGINSAILR-YDGAP 285
Query: 345 KRSPPTTPPSGPLWNDVGSRLNQSLAIKARKGFIIPPPQSADRMIVMLNTQNNVSGNVRW 404
P T + LN++ + +P +A + +N N +G+ +
Sbjct: 286 AVEPTTNQSTST------QPLNET-NLHPLVSTPVPGSPAAGGVDKAINMAFNFNGS-NF 337
Query: 405 SVNKVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRNGVYRL 464
+N ++T P +P L+ + +A D P V L
Sbjct: 338 FINGASFTPPSVPVLLQILSGAQTAQDLLP-----------------------SGSVXTL 374
Query: 465 NFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMK 524
N++++I + +HLHGH F V+ YN NPI +
Sbjct: 375 PSNASIEISFPATAAAPGAPHP---FHLHGHVFAVVRSAGSTV--------YNYSNPIFR 423
Query: 525 NTVPVHRYGW---TALRFRADNPGAWAFHCHIESHFYMGMGVVFAEGI 569
+ V +RF +NPG W HCHI+ H G VV AE +
Sbjct: 424 DVVSTGTPAAGDNVTIRFLTNNPGPWFLHCHIDFHLEGGFAVVQAEDV 471
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 177 bits (449), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 150/535 (28%), Positives = 226/535 (42%), Gaps = 86/535 (16%)
Query: 41 RIRRYKWEVKYEYKSPDCFR-KVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIH 99
+ W ++Y++ D + + VIT NG+ P P I + D V + L N + N ++H
Sbjct: 1 ETHTFNWTTGWDYRNVDGLKSRPVITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMH 60
Query: 100 WHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVD-RPGTYLYHAHYGMQREAGLYGSI 158
+HG+ Q GT DG +TQCPI PG T Y F VD GTY YH+H Q E G+ G
Sbjct: 61 FHGLFQNGTASMDGVPFLTQCPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMKGLF 120
Query: 159 RVSLPEGESEPYAYDYDRSIILNDWFHRSAFEQAAGLSSI--PFQWVGEPQSLLIQGKGR 216
+ + +S PY YD + S+ L++W+H + S+ P PQ+L++
Sbjct: 121 II---KDDSFPYDYDEELSLSLSEWYHDLVTDLTKSFMSVYNPTGAEPIPQNLIVNNTMN 177
Query: 217 FNCSSLNSPSLNVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMT 276
V P TY LRI ++ + F IE H MT
Sbjct: 178 LTWE--------------------------VQPDTTYLLRIVNVGGFVSQYFWIEDHEMT 211
Query: 277 VVEADGHNVEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAI 336
VVE DG E V L+I + Y+VL+ + +N+ A P L +
Sbjct: 212 VVEIDGITTEKNVTDMLYITVAQRYTVLVHTKNDTDKNF-AIMQKFDDTMLDVIPSDLQL 270
Query: 337 --LNYYPNHPKRSPPTTPPSGPLWNDVGSRLNQSLAIKARKGFIIPPPQSADRMIVMLNT 394
+Y + + PT + N + Q +A G D +I +
Sbjct: 271 NATSYMVYNKTAALPTQNYVDSIDNFLDDFYLQPYEKEAIYG-------EPDHVITVDVV 323
Query: 395 QNNVSGNVRWS-VNKVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENK 453
+N+ V ++ N +TYT P +P L+ + S+ DQ ++
Sbjct: 324 MDNLKNGVNYAFFNNITYTAPKVPTLMT----VLSSGDQ----------------ANNSE 363
Query: 454 SYTIRNGVYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWV----------LGYG 503
Y + L + V+I+ L+N+ + THP+HLHGH F LG
Sbjct: 364 IYGSNTHTFILEKDEIVEIV------LNNQDTGTHPFHLHGHAFQTIQRDRTYDDALGEV 417
Query: 504 EGKFDIYNDPK--KYNLVNPIMKNTVPVHRYGWTALRFRADNPGAWAFHCHIESH 556
FD N P +Y P+ ++T+ V +RF+ADNPG W FHCHIE H
Sbjct: 418 PHSFDPDNHPAFPEY----PMRRDTLYVRPQSNFVIRFKADNPGVWFFHCHIEWH 468
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 168 bits (426), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 159/551 (28%), Positives = 232/551 (42%), Gaps = 90/551 (16%)
Query: 53 YKSPD-CFRKVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWA 111
+ PD ++ V+ ING GP I A DTV V + N+L+T +IHWHGI Q T
Sbjct: 46 WMGPDGVVKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLH 105
Query: 112 DGTEGVTQCPILP-GETFTYKFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPEGESEPY 170
DG GVT+CPI P G TY++ + GT YH+H+ Q G+ G+I+++ P
Sbjct: 106 DGANGVTECPIPPKGGQRTYRWRARQYGTSWYHSHFSAQYGNGVVGTIQINGPAS----L 161
Query: 171 AYDYDRSII-LNDWFHRSAFE--QAAGLSSIPFQWVGEPQSLLIQGKGRFNCSSLNSPSL 227
YD D + + D+++R+A + ++ PF ++LI G +P+
Sbjct: 162 PYDIDLGVFPITDYYYRAADDLVHFTQNNAPPFS-----DNVLINGTAV-------NPNT 209
Query: 228 NVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHNVEP 287
G N +T+ PGK +RLRI + + + + H MTV+ AD V
Sbjct: 210 GEGQYAN----------VTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNA 259
Query: 288 FVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNAT-FTTPPGLAILNYYPNHPKR 346
V +LF+ G+ Y V+I A + P NYW + A + P A + +Y P
Sbjct: 260 MTVDSLFLAVGQRYDVVIDASRAP-DNYWFNVTFGGQAACGGSLNPHPAAIFHYAGAPGG 318
Query: 347 SPPT--TPPSGPLWNDVGSRLNQSLAIKARKGFIIPPPQSADRMIVMLNTQNNVSGN--V 402
P TPP V + +L ++ +P R L +++G
Sbjct: 319 LPTDEGTPP-------VDHQCLDTLDVRPVVPRSVPVNSFVKRPDNTLPVALDLTGTPLF 371
Query: 403 RWSVN----KVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIR 458
W VN V + P I Y++ N SY +
Sbjct: 372 VWKVNGSDINVDWGKPIIDYIL-----------------------------TGNTSYPVS 402
Query: 459 NGVYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEG---------KFDI 509
+ + +++ L N S HP HLHGHDF VLG FD
Sbjct: 403 DNIVQVDAVDQWTYWLIE-NDPEGPFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDP 461
Query: 510 YNDPKKYNLVNPIMKNTVPVHRYGWTALRFRADNPGAWAFHCHIESHFYMGMGVVFAEGI 569
D + N NP ++T + GW L FR DNPGAW FHCHI H G+ V F +
Sbjct: 462 AVDLARLNGDNPPRRDTTMLPAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDF---L 518
Query: 570 ERLGELPSSIK 580
ER +L I
Sbjct: 519 ERPADLRQRIS 529
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 168 bits (425), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 159/551 (28%), Positives = 232/551 (42%), Gaps = 90/551 (16%)
Query: 53 YKSPD-CFRKVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWA 111
+ PD ++ V+ ING GP I A DTV V + N+L+T +IHWHGI Q T
Sbjct: 46 WMGPDGVVKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLH 105
Query: 112 DGTEGVTQCPILP-GETFTYKFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPEGESEPY 170
DG GVT+CPI P G TY++ + GT YH+H+ Q G+ G+I+++ P
Sbjct: 106 DGANGVTECPIPPKGGQRTYRWRARQYGTSWYHSHFSAQYGNGVVGTIQINGPAS----L 161
Query: 171 AYDYDRSII-LNDWFHRSAFE--QAAGLSSIPFQWVGEPQSLLIQGKGRFNCSSLNSPSL 227
YD D + + D+++R+A + ++ PF ++LI G +P+
Sbjct: 162 PYDIDLGVFPITDYYYRAADDLVHFTQNNAPPFS-----DNVLINGTAV-------NPNT 209
Query: 228 NVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHNVEP 287
G N +T+ PGK +RLRI + + + + H MTV+ AD V
Sbjct: 210 GEGQYAN----------VTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNA 259
Query: 288 FVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNAT-FTTPPGLAILNYYPNHPKR 346
V +LF+ G+ Y V+I A + P NYW + A + P A + +Y P
Sbjct: 260 MTVDSLFLAVGQRYDVVIDASRAP-DNYWFNVTFGGQAACGGSLNPHPAAIFHYAGAPGG 318
Query: 347 SPPT--TPPSGPLWNDVGSRLNQSLAIKARKGFIIPPPQSADRMIVMLNTQNNVSGN--V 402
P TPP V + +L ++ +P R L +++G
Sbjct: 319 LPTDEGTPP-------VDHQCLDTLDVRPVVPRSVPVNSFVKRPDNTLPVALDLTGTPLF 371
Query: 403 RWSVN----KVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIR 458
W VN V + P I Y++ N SY +
Sbjct: 372 VWKVNGSDINVDWGKPIIDYIL-----------------------------TGNTSYPVS 402
Query: 459 NGVYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEG---------KFDI 509
+ + +++ L N S HP HLHGHDF VLG FD
Sbjct: 403 DNIVQVDAVDQWTYWLIE-NDPEGPFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDP 461
Query: 510 YNDPKKYNLVNPIMKNTVPVHRYGWTALRFRADNPGAWAFHCHIESHFYMGMGVVFAEGI 569
D + N NP ++T + GW L FR DNPGAW FHCHI H G+ V F +
Sbjct: 462 AVDLARLNGDNPPRRDTTMLPAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDF---L 518
Query: 570 ERLGELPSSIK 580
ER +L I
Sbjct: 519 ERPADLRQRIS 529
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 168 bits (425), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 159/551 (28%), Positives = 232/551 (42%), Gaps = 90/551 (16%)
Query: 53 YKSPD-CFRKVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWA 111
+ PD ++ V+ ING GP I A DTV V + N+L+T +IHWHGI Q T
Sbjct: 46 WMGPDGVVKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLH 105
Query: 112 DGTEGVTQCPILP-GETFTYKFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPEGESEPY 170
DG GVT+CPI P G TY++ + GT YH+H+ Q G+ G+I+++ P
Sbjct: 106 DGANGVTECPIPPKGGQRTYRWRARQYGTSWYHSHFSAQYGNGVVGTIQINGPAS----L 161
Query: 171 AYDYDRSII-LNDWFHRSAFE--QAAGLSSIPFQWVGEPQSLLIQGKGRFNCSSLNSPSL 227
YD D + + D+++R+A + ++ PF ++LI G +P+
Sbjct: 162 PYDIDLGVFPITDYYYRAADDLVHFTQNNAPPFS-----DNVLINGTAV-------NPNT 209
Query: 228 NVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHNVEP 287
G N +T+ PGK +RLRI + + + + H MTV+ AD V
Sbjct: 210 GEGQYAN----------VTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNA 259
Query: 288 FVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNAT-FTTPPGLAILNYYPNHPKR 346
V +LF+ G+ Y V+I A + P NYW + A + P A + +Y P
Sbjct: 260 MTVDSLFLAVGQRYDVVIDASRAP-DNYWFNVTFGGQAACGGSLNPHPAAIFHYAGAPGG 318
Query: 347 SPPT--TPPSGPLWNDVGSRLNQSLAIKARKGFIIPPPQSADRMIVMLNTQNNVSGN--V 402
P TPP V + +L ++ +P R L +++G
Sbjct: 319 LPTDEGTPP-------VDHQCLDTLDVRPVVPRSVPVNSFVKRPDNTLPVALDLTGTPLF 371
Query: 403 RWSVN----KVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIR 458
W VN V + P I Y++ N SY +
Sbjct: 372 VWKVNGSDINVDWGKPIIDYIL-----------------------------TGNTSYPVS 402
Query: 459 NGVYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEG---------KFDI 509
+ + +++ L N S HP HLHGHDF VLG FD
Sbjct: 403 DNIVQVDAVDQWTYWLIE-NDPEGPFSLPHPMHLHGHDFLVLGRSPDVPAASQQRFVFDP 461
Query: 510 YNDPKKYNLVNPIMKNTVPVHRYGWTALRFRADNPGAWAFHCHIESHFYMGMGVVFAEGI 569
D + N NP ++T + GW L FR DNPGAW FHCHI H G+ V F +
Sbjct: 462 AVDLARLNGDNPPRRDTTMLPAGGWLLLAFRTDNPGAWLFHCHIAWHVSGGLSVDF---L 518
Query: 570 ERLGELPSSIK 580
ER +L I
Sbjct: 519 ERPADLRQRIS 529
>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada
Length = 580
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 143/281 (50%), Gaps = 30/281 (10%)
Query: 43 RRYKWEVKYEYKSPDCFRKVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHG 102
R Y V+ +PD + + +T NG PGP I A D +I+ + N+L +IHWHG
Sbjct: 68 REYWLSVENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHG 127
Query: 103 IRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAHYGMQREAGLYGSIRVSL 162
IRQ+G+ DG GVTQCPI PG+T TYKF V + GT YH+H+ +Q GL+G + ++
Sbjct: 128 IRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVTQYGTTWYHSHFSLQYGDGLFGPLIING 187
Query: 163 PEGESEPYAYDYDRSII-LNDWFHRSAFE--QAAGLSSIPFQWVGEPQSLLIQGKGRFNC 219
P YD D +I L DW H S FE A L + P ++ L+ G F+C
Sbjct: 188 PATAD----YDEDVGVIFLQDWAHESVFEIWDTARLGAPP-----ALENTLMNGTNTFDC 238
Query: 220 SSLNSPSLNVGIICNETNPEC----SPYVITVIPGKTYRLRISSLTALSALSFQIEGHNM 275
S+ T+P C + +T + G YRLR+ ++ S F I+ H +
Sbjct: 239 SA-------------STDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTL 285
Query: 276 TVVEADGHNVEPFVVQNLFIYSGETYSVLIKADQNPTRNYW 316
TV+ D + P+ L I G+ Y V+++A+ NYW
Sbjct: 286 TVIANDLVPIVPYTTDTLLIGIGQRYDVIVEANA-AADNYW 325
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 47/80 (58%)
Query: 488 HPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRADNPGAW 547
HP HLHGHDF+++ F+ P K+NLVNP ++ + G+ A+ F+ DNPG+W
Sbjct: 463 HPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPGSW 522
Query: 548 AFHCHIESHFYMGMGVVFAE 567
HCHI H GM + F E
Sbjct: 523 LLHCHIAWHASEGMAMQFVE 542
>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67
A Resolution
Length = 580
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 143/281 (50%), Gaps = 30/281 (10%)
Query: 43 RRYKWEVKYEYKSPDCFRKVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHG 102
R Y V+ +PD + + +T NG PGP I A D +I+ + N+L +IHWHG
Sbjct: 68 REYWLSVENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHG 127
Query: 103 IRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAHYGMQREAGLYGSIRVSL 162
IRQ+G+ DG GVTQCPI PG+T TYKF V + GT YH+H+ +Q GL+G + ++
Sbjct: 128 IRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVTQYGTTWYHSHFSLQYGDGLFGPLIING 187
Query: 163 PEGESEPYAYDYDRSII-LNDWFHRSAFE--QAAGLSSIPFQWVGEPQSLLIQGKGRFNC 219
P YD D +I L DW H S FE A L + P ++ L+ G F+C
Sbjct: 188 PATAD----YDEDVGVIFLQDWAHESVFEIWDTARLGAPP-----ALENTLMNGTNTFDC 238
Query: 220 SSLNSPSLNVGIICNETNPEC----SPYVITVIPGKTYRLRISSLTALSALSFQIEGHNM 275
S+ T+P C + +T + G YRLR+ ++ S F I+ H +
Sbjct: 239 SA-------------STDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTL 285
Query: 276 TVVEADGHNVEPFVVQNLFIYSGETYSVLIKADQNPTRNYW 316
TV+ D + P+ L I G+ Y V+++A+ NYW
Sbjct: 286 TVIANDLVPIVPYTTDTLLIGIGQRYDVIVEANA-AADNYW 325
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%)
Query: 488 HPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRADNPGAW 547
HP HLHGHDF+++ F+ P K+NLVNP ++ + G+ A+ F+ DNPG+W
Sbjct: 463 HPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPGSW 522
Query: 548 AFHCHIESHFYMGMGVVFAE 567
HCHI H G+ + F E
Sbjct: 523 LLHCHIAWHASEGLAMQFVE 542
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 134/273 (49%), Gaps = 34/273 (12%)
Query: 50 KYEYKSPD-CFRKVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGT 108
K + PD + VV+ +N + GPTI+A D + V + N+L T ++HWHG+RQ+G
Sbjct: 84 KENWIGPDGVLKNVVMLVNDKIIGPTIRANWGDNIEVTVINNLKTNGTSMHWHGLRQLGN 143
Query: 109 PWADGTEGVTQCPILP-GETFTYKFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPEGES 167
+ DG GVT+CPI P G TYKF + GT YH+H+ Q G+ G+I++ P
Sbjct: 144 VFNDGANGVTECPIPPKGGRKTYKFRATQYGTSWYHSHFSAQYGNGVVGTIQIDGPAS-- 201
Query: 168 EPYAYDYDRSII-LNDWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRFNCSSLNSPS 226
YD D + L D+++RSA E F S+ PS
Sbjct: 202 --LPYDIDLGVFPLMDYYYRSADELV-----------------------HFTQSNGAPPS 236
Query: 227 LNVGIICNETNPECSP---YVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGH 283
NV +PE Y +T+ PGK +RLRI + + + + GHNMTV+ D
Sbjct: 237 DNVLFNGTARHPETGAGQWYNVTLTPGKRHRLRIINTSTDNHFQVSLVGHNMTVIATDMV 296
Query: 284 NVEPFVVQNLFIYSGETYSVLIKADQNPTRNYW 316
V F V +LF+ G+ Y V I A+ P NYW
Sbjct: 297 PVNAFTVSSLFLAVGQRYDVTIDANS-PVGNYW 328
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 12/148 (8%)
Query: 447 FSVAENKSYTIRNGVYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGK 506
+ ++ N SY + + + +++ L + + S HP HLHGHDF VLG +
Sbjct: 431 YVMSGNTSYPVSDNIVQVDAVDQWTYWLIENDPTNPIVSLPHPMHLHGHDFLVLGRSPDE 490
Query: 507 ---------FDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRADNPGAWAFHCHIESHF 557
FD D + NP+ ++ + GW L F+ DNPGAW FHCHI H
Sbjct: 491 LPSAGVRHIFDPAKDLPRLKGNNPVRRDVTMLPAGGWLLLAFKTDNPGAWLFHCHIAWHV 550
Query: 558 YMGMGVVFAEGIERLGELPSSIKGCVHR 585
G+ V F +ER +L + + R
Sbjct: 551 SGGLSVDF---LERPNDLRTQLNSNAKR 575
>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|B Chain B, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|C Chain C, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|D Chain D, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|E Chain E, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|F Chain F, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
Length = 318
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 109/275 (39%), Gaps = 37/275 (13%)
Query: 67 NGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGE 126
NG+ P P I + D V V + N + T IHWHG+ Q GT +DG TQ I PG+
Sbjct: 28 NGQVPAPLIHVMEGDDVTVNVTN-MTTLPHTIHWHGMLQRGTWQSDGVPHATQHAIEPGD 86
Query: 127 TFTYKFVVDRPGTYLYHAHYGMQREA---GLYGSIRVSLPEGESEPYAYDYDRSIILNDW 183
TFTYKF + GT YH H + G++G + V D ++L+DW
Sbjct: 87 TFTYKFKAEPAGTMWYHCHVNVNEHVTMRGMWGPLIVEPKNPLPIEKTVTKDYILMLSDW 146
Query: 184 FHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRFNCSSLNSPSLNVGIICNETNPECSPY 243
S++ G IP F+ ++N+ S PE P
Sbjct: 147 V--SSWANKPGEGGIPGD--------------VFDYYTINAKSF----------PETQP- 179
Query: 244 VITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHNVE-PFVVQNLFIYSGETYS 302
I V G RLR+ + GH + DG ++ P + I GE Y
Sbjct: 180 -IRVKKGDVIRLRLIG-AGDHVHAIHTHGHISQIAFKDGFPLDKPIKGDTVLIGPGERYD 237
Query: 303 VLIKADQNPTRNYWATTNIVSRNATFTTPPGLAIL 337
V++ D NP W + V + T P I+
Sbjct: 238 VILNMD-NP--GLWMIHDHVDTHTTNGDKPDGGIM 269
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 79/212 (37%), Gaps = 58/212 (27%)
Query: 353 PSGPLWNDVGSRLNQSLAIKARKGFIIPPPQSADRMIVMLNTQNNVSGNVRWSVNKVTYT 412
P+G +W +N+ + ++ G +I P++ L + V+ +
Sbjct: 96 PAGTMWYHCHVNVNEHVTMRGMWGPLIVEPKNP------LPIEKTVTKD----------- 138
Query: 413 LPHIPYLIALKENITSAFDQTP----PPDGYDFKNYDIFSVAENKSYTIRNG-VYRLNFN 467
Y++ L + ++S ++ P D +D+ + S E + ++ G V RL
Sbjct: 139 -----YILMLSDWVSSWANKPGEGGIPGDVFDYYTINAKSFPETQPIRVKKGDVIRLRLI 193
Query: 468 STVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTV 527
D H H HGH + + +G + L PI +TV
Sbjct: 194 GAGD--------------HVHAIHTHGH-ISQIAFKDG----------FPLDKPIKGDTV 228
Query: 528 ---PVHRYGWTALRFRADNPGAWAFHCHIESH 556
P RY + DNPG W H H+++H
Sbjct: 229 LIGPGERY---DVILNMDNPGLWMIHDHVDTH 257
>pdb|2XU9|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27
pdb|2XUW|A Chain A, Crystal Structure Of Apolaccase From Thermus Thermophilus
Hb27
pdb|2XVB|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 5 Min. In 5 Mm Hgcl2 At 278 K.
pdb|4AI7|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 2 H In 5 Mm Hgcl2 At 278 K.
pdb|2YAE|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27(0.0-12.5 Percent Dose)
pdb|2YAF|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (12.5-25.0 Percent Dose)
pdb|2YAH|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (25.0-37.5 Percent Dose)
pdb|2YAM|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (37.5-50.0 Percent Dose)
pdb|2YAO|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (50.0-62.5 Percent Dose)
pdb|2YAP|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (62.5-75.0 Percent Dose)
pdb|2YAQ|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (75.0-87.5 Percent Dose)
pdb|2YAR|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (87.5-100.0 Percent Dose)
Length = 439
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 111/263 (42%), Gaps = 61/263 (23%)
Query: 60 RKVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGI---RQIGTPWADGTEG 116
R ++T G PGPT++ R DTV + L+N L E +HWHG+ ++ P+ +
Sbjct: 34 RATLLTYGGSFPGPTLRVRPRDTVRLTLENR-LPEPTNLHWHGLPISPKVDDPFLE---- 88
Query: 117 VTQCPILPGETFTYKFVVDR--PGTYLYHAHY----GMQREAGLYGSIRV-----SLPE- 164
I PGE++TY+F V + GT+ YH H Q AGL G++ V ++PE
Sbjct: 89 -----IPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVVESSLDAIPEL 143
Query: 165 GESEPYAYDYDRSIILNDWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRFNCSSLNS 224
E+E + ++L D A + P W+ + L+ G
Sbjct: 144 REAE------EHLLVLKDL----ALQGGRPAPHTPMDWMNGKEGDLVLVNGALR------ 187
Query: 225 PSLNVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHN 284
P+L V T RLR+ + + ++ H + ++ ADG
Sbjct: 188 PTL-------------------VAQKATLRLRLLNASNARYYRLALQDHPLYLIAADGGF 228
Query: 285 V-EPFVVQNLFIYSGETYSVLIK 306
+ EP V L + GE VL++
Sbjct: 229 LEEPLEVSELLLAPGERAEVLVR 251
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 34/91 (37%), Gaps = 13/91 (14%)
Query: 479 SLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNL-VNPIMKNTVPVHRYGWTAL 537
+ N+ HP+HLH H F VL G F NL + + VP+ G T
Sbjct: 361 EVENQGDMDHPFHLHVHPFQVLSVGGRPFPYRAWKDVVNLKAGEVARLLVPLREKGRT-- 418
Query: 538 RFRADNPGAWAFHCHIESHFYMGMGVVFAEG 568
FHCHI H GM V G
Sbjct: 419 ----------VFHCHIVEHEDRGMMGVLEVG 439
>pdb|3GDC|A Chain A, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|B Chain B, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|C Chain C, Crystal Structure Of Multicopper Oxidase
Length = 288
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 65 TINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILP 124
+ NGR PGPT+ AR+ D + + N+ + IH+HG+ + DGT G+ I P
Sbjct: 58 SYNGRIPGPTLWAREGDALRIHFTNAGAHPHT-IHFHGVHRATM---DGTPGIGAGSIAP 113
Query: 125 GETFTYKFVVDRPGTYLYHAH---YGMQREAGLYGSIRVSLPEG 165
G++FTY+F GT+LYH H GLYG V EG
Sbjct: 114 GQSFTYEFDATPFGTHLYHCHQSPLAPHIAKGLYGGFIVEPKEG 157
>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A
Metallo-Oxidase
Length = 481
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 106/253 (41%), Gaps = 45/253 (17%)
Query: 65 TINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILP 124
T NG P P I+ + D + + +KN L E IHWHG+ P +G PIL
Sbjct: 74 TYNGLVPAPKIEVFEGDKLEILVKNK-LKEATTIHWHGV-----PVPPDQDGSPHDPILA 127
Query: 125 GETFTYKFVV--DRPGTYLY--HAHYGMQREA--GLYGSIRVSLPEGESEPYAYDYDRSI 178
GE Y+F + D GTY Y H HY ++ GL G+ + + + + ++ ++ +
Sbjct: 128 GEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVI---KAKKDALSHLKEKDL 184
Query: 179 ILNDWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRFNCSSLNSPSLNVGIICNETNP 238
+++D E A ++ W+ + + G+F + + NE
Sbjct: 185 MISDL---RLDENAQIPNNNLNDWLNGREGEFVLINGQFKPK--------IKLATNE--- 230
Query: 239 ECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHNVEPFVV-QNLFIYS 297
R+RI + TA L+ +I+G +V DG +E + + LF+
Sbjct: 231 ---------------RIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKTIYKEELFLSP 275
Query: 298 GETYSVLIKADQN 310
VLI A ++
Sbjct: 276 ASRVEVLIDAPKD 288
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 482 NKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRA 541
NK+ HP+H+HG F ++ K + ++ +++T+ V LR +
Sbjct: 401 NKSHMDHPFHIHGTQFELIS---SKLNGKVQKAEFR----ALRDTINVRPNEELRLRMKQ 453
Query: 542 DNPGAWAFHCHIESHFYMGM 561
D G +HCHI H +GM
Sbjct: 454 DFKGLRMYHCHILEHEDLGM 473
>pdb|3NSF|A Chain A, Apo Form Of The Multicopper Oxidase Cueo
Length = 505
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 116/535 (21%), Positives = 196/535 (36%), Gaps = 126/535 (23%)
Query: 67 NGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGE 126
NG GP ++ ++ V V++ N L TE +HWHG+ G +G Q I PG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQL-TEETTLHWHGLEVPGE-----VDGGPQGIIPPGG 95
Query: 127 TFTYKFVVDRPGTYLY-----HAHYGMQREAGLYGSIRVSLPEGESEPYAYDYDRSIILN 181
+ VD+P + H G Q GL G + +I +
Sbjct: 96 KRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLV-------------------VIED 136
Query: 182 DWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRFNCSS-----LNSPSLNVGIICNET 236
D + + G+ +P +++Q K +F+ L+ + VG +
Sbjct: 137 DEILKLMLPKQWGIDDVP---------VIVQDK-KFSADGQIDYQLDVMTAAVGWFGDTL 186
Query: 237 NPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHN-MTVVEADGHNV-EPFVVQNLF 294
+ Y P RLR+ + +L+F + + V+ +DG + EP V L
Sbjct: 187 LTNGAIYPQHAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELP 246
Query: 295 IYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNYYPNHP--KRSPPTTP 352
+ GE + VL++ + N + + T VS+ G+AI + HP + P
Sbjct: 247 VLMGERFEVLVEVNDN--KPFDLVTLPVSQM-------GMAIAPFDKPHPVMRIQPIAIS 297
Query: 353 PSGPLWNDVGSRLNQSLAIKARKGFIIPPPQ-SADRMIVMLNTQNNVS--GNVRWSVNKV 409
SG L + L+ A+ + +G + Q S D M+ M+ Q + G+ +
Sbjct: 298 ASGALPD----TLSSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDH 353
Query: 410 TYTLPHIPYLIALKENITSAFD--QTPPPDGYDFK-NYDIFSVAENKSYTIRNGVYRLNF 466
+ + H+ + N FD +G F N +F+ A+ + R
Sbjct: 354 SQMMGHMGHGNMNHMNHGGKFDFHHANKINGQAFDMNKPMFAAAKGQ-------YERWVI 406
Query: 467 NSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNT 526
+ D++L HP+H+HG F +L +N
Sbjct: 407 SGVGDMML-------------HPFHIHGTQFRILS----------------------ENG 431
Query: 527 VP--VHRYGW------------TALRFRADNPGAWAF--HCHIESHFYMGMGVVF 565
P HR GW ++F D P A+ HCH+ H GM + F
Sbjct: 432 KPPAAHRAGWKDTVKVEGNVSEVLVKFNHDAPKEHAYMAHCHLLEHEDTGMMLGF 486
>pdb|1PF3|A Chain A, Crystal Structure Of The M441l Mutant Of The Multicopper
Oxidase Cueo
Length = 498
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 116/535 (21%), Positives = 196/535 (36%), Gaps = 126/535 (23%)
Query: 67 NGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGE 126
NG GP ++ ++ V V++ N L TE +HWHG+ G +G Q I PG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQL-TEETTLHWHGLEVPGE-----VDGGPQGIIPPGG 95
Query: 127 TFTYKFVVDRPGTYLY-----HAHYGMQREAGLYGSIRVSLPEGESEPYAYDYDRSIILN 181
+ VD+P + H G Q GL G + +I +
Sbjct: 96 KRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLV-------------------VIED 136
Query: 182 DWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRFNCSS-----LNSPSLNVGIICNET 236
D + + G+ +P +++Q K +F+ L+ + VG +
Sbjct: 137 DEILKLMLPKQWGIDDVP---------VIVQDK-KFSADGQIDYQLDVMTAAVGWFGDTL 186
Query: 237 NPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHN-MTVVEADGHNV-EPFVVQNLF 294
+ Y P RLR+ + +L+F + + V+ +DG + EP V L
Sbjct: 187 LTNGAIYPQHAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELP 246
Query: 295 IYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNYYPNHP--KRSPPTTP 352
+ GE + VL++ + N + + T VS+ G+AI + HP + P
Sbjct: 247 VLMGERFEVLVEVNDN--KPFDLVTLPVSQM-------GMAIAPFDKPHPVMRIQPIAIS 297
Query: 353 PSGPLWNDVGSRLNQSLAIKARKGFIIPPPQ-SADRMIVMLNTQNNVS--GNVRWSVNKV 409
SG L + L+ A+ + +G + Q S D M+ M+ Q + G+ +
Sbjct: 298 ASGALPD----TLSSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDH 353
Query: 410 TYTLPHIPYLIALKENITSAFD--QTPPPDGYDFK-NYDIFSVAENKSYTIRNGVYRLNF 466
+ + H+ + N FD +G F N +F+ A+ + R
Sbjct: 354 SQMMGHMGHGNMNHMNHGGKFDFHHANKINGQAFDMNKPMFAAAKGQ-------YERWVI 406
Query: 467 NSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNT 526
+ D++L HP+H+HG F +L +N
Sbjct: 407 SGVGDMLL-------------HPFHIHGTQFRILS----------------------ENG 431
Query: 527 VP--VHRYGW------------TALRFRADNPGAWAF--HCHIESHFYMGMGVVF 565
P HR GW ++F D P A+ HCH+ H GM + F
Sbjct: 432 KPPAAHRAGWKDTVKVEGNVSEVLVKFNHDAPKEHAYMAHCHLLEHEDTGMMLGF 486
>pdb|3QQX|A Chain A, Reduced Native Intermediate Of The Multicopper Oxidase
Cueo
Length = 505
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 116/535 (21%), Positives = 196/535 (36%), Gaps = 126/535 (23%)
Query: 67 NGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGE 126
NG GP ++ ++ V V++ N L TE +HWHG+ G +G Q I PG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQL-TEETTLHWHGLEVPGE-----VDGGPQGIIPPGG 95
Query: 127 TFTYKFVVDRPGTYLY-----HAHYGMQREAGLYGSIRVSLPEGESEPYAYDYDRSIILN 181
+ VD+P + H G Q GL G + +I +
Sbjct: 96 KRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLV-------------------VIED 136
Query: 182 DWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRFNCSS-----LNSPSLNVGIICNET 236
D + + G+ +P +++Q K +F+ L+ + VG +
Sbjct: 137 DEILKLMLPKQWGIDDVP---------VIVQDK-KFSADGQIDYQLDVMTAAVGWFGDTL 186
Query: 237 NPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHN-MTVVEADGHNV-EPFVVQNLF 294
+ Y P RLR+ + +L+F + + V+ +DG + EP V L
Sbjct: 187 LTNGAIYPQHAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELP 246
Query: 295 IYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNYYPNHP--KRSPPTTP 352
+ GE + VL++ + N + + T VS+ G+AI + HP + P
Sbjct: 247 VLMGERFEVLVEVNDN--KPFDLVTLPVSQM-------GMAIAPFDKPHPVMRIQPIAIS 297
Query: 353 PSGPLWNDVGSRLNQSLAIKARKGFIIPPPQ-SADRMIVMLNTQNNVS--GNVRWSVNKV 409
SG L + L+ A+ + +G + Q S D M+ M+ Q + G+ +
Sbjct: 298 ASGALPD----TLSSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDH 353
Query: 410 TYTLPHIPYLIALKENITSAFD--QTPPPDGYDFK-NYDIFSVAENKSYTIRNGVYRLNF 466
+ + H+ + N FD +G F N +F+ A+ + R
Sbjct: 354 SQMMGHMGHGNMNHMNHGGKFDFHHANKINGQAFDMNKPMFAAAKGQ-------YERWVI 406
Query: 467 NSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNT 526
+ D++L HP+H+HG F +L +N
Sbjct: 407 SGVGDMML-------------HPFHIHGTQFRILS----------------------ENG 431
Query: 527 VP--VHRYGW------------TALRFRADNPGAWAF--HCHIESHFYMGMGVVF 565
P HR GW ++F D P A+ HCH+ H GM + F
Sbjct: 432 KPPAAHRAGWKDTVKVEGNVSEVLVKFNHDAPKEHAYMAHCHLLEHDDTGMMLGF 486
>pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copper Oxidase From E.
Coli Involved In Copper Homeostasis
pdb|1N68|A Chain A, Copper Bound To The Multicopper Oxidase Cueo
pdb|2FQD|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQE|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQF|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQG|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|3NSD|A Chain A, Silver Bound To The Multicopper Oxidase Cueo (Untagged)
pdb|3OD3|A Chain A, Cueo At 1.1 A Resolution Including Residues In Previously
Disordered Region
pdb|3PAU|A Chain A, Cueo In The Resting Oxidized State
pdb|3PAV|A Chain A, The Reduced Form Of Cueo
Length = 488
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 116/535 (21%), Positives = 196/535 (36%), Gaps = 126/535 (23%)
Query: 67 NGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGE 126
NG GP ++ ++ V V++ N L TE +HWHG+ G +G Q I PG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQL-TEETTLHWHGLEVPGE-----VDGGPQGIIPPGG 95
Query: 127 TFTYKFVVDRPGTYLY-----HAHYGMQREAGLYGSIRVSLPEGESEPYAYDYDRSIILN 181
+ VD+P + H G Q GL G + +I +
Sbjct: 96 KRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLV-------------------VIED 136
Query: 182 DWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRFNCSS-----LNSPSLNVGIICNET 236
D + + G+ +P +++Q K +F+ L+ + VG +
Sbjct: 137 DEILKLMLPKQWGIDDVP---------VIVQDK-KFSADGQIDYQLDVMTAAVGWFGDTL 186
Query: 237 NPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHN-MTVVEADGHNV-EPFVVQNLF 294
+ Y P RLR+ + +L+F + + V+ +DG + EP V L
Sbjct: 187 LTNGAIYPQHAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELP 246
Query: 295 IYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNYYPNHP--KRSPPTTP 352
+ GE + VL++ + N + + T VS+ G+AI + HP + P
Sbjct: 247 VLMGERFEVLVEVNDN--KPFDLVTLPVSQM-------GMAIAPFDKPHPVMRIQPIAIS 297
Query: 353 PSGPLWNDVGSRLNQSLAIKARKGFIIPPPQ-SADRMIVMLNTQNNVS--GNVRWSVNKV 409
SG L + L+ A+ + +G + Q S D M+ M+ Q + G+ +
Sbjct: 298 ASGALPD----TLSSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDH 353
Query: 410 TYTLPHIPYLIALKENITSAFD--QTPPPDGYDFK-NYDIFSVAENKSYTIRNGVYRLNF 466
+ + H+ + N FD +G F N +F+ A+ + R
Sbjct: 354 SQMMGHMGHGNMNHMNHGGKFDFHHANKINGQAFDMNKPMFAAAKGQ-------YERWVI 406
Query: 467 NSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNT 526
+ D++L HP+H+HG F +L +N
Sbjct: 407 SGVGDMML-------------HPFHIHGTQFRILS----------------------ENG 431
Query: 527 VP--VHRYGW------------TALRFRADNPGAWAF--HCHIESHFYMGMGVVF 565
P HR GW ++F D P A+ HCH+ H GM + F
Sbjct: 432 KPPAAHRAGWKDTVKVEGNVSEVLVKFNHDAPKEHAYMAHCHLLEHEDTGMMLGF 486
>pdb|3AW5|A Chain A, Structure Of A Multicopper Oxidase From The
Hyperthermophilic Archaeon Pyrobaculum Aerophilum
Length = 448
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 100/248 (40%), Gaps = 45/248 (18%)
Query: 73 PTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKF 132
PTI R+ V + LKN L TE +HWHG W + I PGE++ Y F
Sbjct: 38 PTIILRRGQRVDMTLKNKL-TEPTIVHWHGFD---VNWHNDAH--PSFAITPGESYNYSF 91
Query: 133 -VVDRPGTYLYHAH-YGMQREAGLYGSIRVSLPEGESEPYAYDYDRSIILNDWFHRSAFE 190
VV+R GTYLYH H +G+ + G + + + E + Y
Sbjct: 92 DVVNRAGTYLYHPHPHGLTAKQFYMGQLGLVIVEDSGSDLGFKY---------------- 135
Query: 191 QAAGLSSIPFQWVGEPQSLLIQGKGRFNCSSLNSPS---LNVGIICNETNPECSPYVITV 247
G++ +P L+I + + + +P+ + G + N +
Sbjct: 136 ---GVNDLP---------LVISDRRFIGGAPVYNPTPMEMIAGFLGNAVLVNGVKDAVFK 183
Query: 248 IPGKTYRLRI-----SSLTALSALSFQIEGHNMTVVEAD-GHNVEPFVVQNLFIYSGETY 301
+ G +YRLR+ + L LS + + M ++ D G P V+ LF+ E
Sbjct: 184 LSGGSYRLRLVNGSNARLYMLSIVKKNGDVVPMRLIAVDQGFLARPIEVRALFLAPAERA 243
Query: 302 SVLIKADQ 309
V+++ +
Sbjct: 244 EVVVELGE 251
>pdb|3UAA|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data1)
pdb|3UAB|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data2)
pdb|3UAC|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data4)
pdb|3UAD|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data5)
pdb|3UAE|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data6)
Length = 489
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 116/538 (21%), Positives = 196/538 (36%), Gaps = 126/538 (23%)
Query: 67 NGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGE 126
NG GP ++ ++ V V++ N L TE +HWHG+ G +G Q I PG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQL-TEETTLHWHGLEVPGE-----VDGGPQGIIPPGG 95
Query: 127 TFTYKFVVDRPGTYLY-----HAHYGMQREAGLYGSIRVSLPEGESEPYAYDYDRSIILN 181
+ VD+P + H G Q GL G + +I +
Sbjct: 96 KRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLV-------------------VIED 136
Query: 182 DWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRFNCSS-----LNSPSLNVGIICNET 236
D + + G+ +P +++Q K +F+ L+ + VG +
Sbjct: 137 DEILKLMLPKQWGIDDVP---------VIVQDK-KFSADGQIDYQLDVMTAAVGWFGDTL 186
Query: 237 NPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHN-MTVVEADGHNV-EPFVVQNLF 294
+ Y P RLR+ + +L+F + + V+ +DG + EP V L
Sbjct: 187 LTNGAIYPQHAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELP 246
Query: 295 IYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNYYPNHP--KRSPPTTP 352
+ GE + VL++ + N + + T VS+ G+AI + HP + P
Sbjct: 247 VLMGERFEVLVEVNDN--KPFDLVTLPVSQM-------GMAIAPFDKPHPVMRIQPIAIS 297
Query: 353 PSGPLWNDVGSRLNQSLAIKARKGFIIPPPQ-SADRMIVMLNTQNNVS--GNVRWSVNKV 409
SG L + L+ A+ + +G + Q S D M+ M+ Q + G+ +
Sbjct: 298 ASGALPD----TLSSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDH 353
Query: 410 TYTLPHIPYLIALKENITSAFD--QTPPPDGYDFK-NYDIFSVAENKSYTIRNGVYRLNF 466
+ + H+ + N FD +G F N +F+ A+ + R
Sbjct: 354 SQMMGHMGHGNMNHMNHGGKFDFHHANKINGQAFDMNKPMFAAAKGQ-------YERWVI 406
Query: 467 NSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNT 526
+ D++L HP+H+HG F +L +N
Sbjct: 407 SGVGDMML-------------HPFHIHGTQFRILS----------------------ENG 431
Query: 527 VP--VHRYGW------------TALRFRADNPGAWAF--HCHIESHFYMGMGVVFAEG 568
P HR GW ++F D P A+ H H+ H GM + F G
Sbjct: 432 KPPAAHRAGWKDTVKVEGNVSEVLVKFNHDAPKEHAYMAHSHLLEHQDTGMMLGFTVG 489
>pdb|3NSC|A Chain A, C500s Mutant Of Cueo Bound To Cu(Ii)
pdb|3NT0|A Chain A, C500s (T1d) Mutant Of Cueo Soaked In And Bound To Cu(I)
Length = 505
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 115/535 (21%), Positives = 195/535 (36%), Gaps = 126/535 (23%)
Query: 67 NGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGE 126
NG GP ++ ++ V V++ N L TE +HWHG+ G +G Q I PG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQL-TEETTLHWHGLEVPGE-----VDGGPQGIIPPGG 95
Query: 127 TFTYKFVVDRPGTYLY-----HAHYGMQREAGLYGSIRVSLPEGESEPYAYDYDRSIILN 181
+ VD+P + H G Q GL G + +I +
Sbjct: 96 KRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLV-------------------VIED 136
Query: 182 DWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRFNCSS-----LNSPSLNVGIICNET 236
D + + G+ +P +++Q K +F+ L+ + VG +
Sbjct: 137 DEILKLMLPKQWGIDDVP---------VIVQDK-KFSADGQIDYQLDVMTAAVGWFGDTL 186
Query: 237 NPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHN-MTVVEADGHNV-EPFVVQNLF 294
+ Y P RLR+ + +L+F + + V+ +DG + EP V L
Sbjct: 187 LTNGAIYPQHAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELP 246
Query: 295 IYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNYYPNHP--KRSPPTTP 352
+ GE + VL++ + N + + T VS+ G+AI + HP + P
Sbjct: 247 VLMGERFEVLVEVNDN--KPFDLVTLPVSQM-------GMAIAPFDKPHPVMRIQPIAIS 297
Query: 353 PSGPLWNDVGSRLNQSLAIKARKGFIIPPPQ-SADRMIVMLNTQNNVS--GNVRWSVNKV 409
SG L + L+ A+ + +G + Q S D M+ M+ Q + G+ +
Sbjct: 298 ASGALPD----TLSSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDH 353
Query: 410 TYTLPHIPYLIALKENITSAFD--QTPPPDGYDFK-NYDIFSVAENKSYTIRNGVYRLNF 466
+ + H+ + N FD +G F N +F+ A+ + R
Sbjct: 354 SQMMGHMGHGNMNHMNHGGKFDFHHANKINGQAFDMNKPMFAAAKGQ-------YERWVI 406
Query: 467 NSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNT 526
+ D++L HP+H+HG F +L +N
Sbjct: 407 SGVGDMML-------------HPFHIHGTQFRILS----------------------ENG 431
Query: 527 VP--VHRYGW------------TALRFRADNPGAWAF--HCHIESHFYMGMGVVF 565
P HR GW ++F D P A+ H H+ H GM + F
Sbjct: 432 KPPAAHRAGWKDTVKVEGNVSEVLVKFNHDAPKEHAYMAHSHLLEHEDTGMMLGF 486
>pdb|2YXV|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXV|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
Length = 446
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 100/256 (39%), Gaps = 47/256 (18%)
Query: 67 NGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGE 126
NG GP ++ ++ V V++ N L TE +HWHG+ G +G Q I PG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQL-TEETTLHWHGLEVPGE-----VDGGPQGIIPPGG 95
Query: 127 TFTYKFVVDRPGTYLY-----HAHYGMQREAGLYGSIRVSLPEGESEPYAYDYDRSIILN 181
+ VD+P + H G Q GL G + +I +
Sbjct: 96 KRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLV-------------------VIED 136
Query: 182 DWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRFNCSS-----LNSPSLNVGIICNET 236
D + + G+ +P +++Q K +F+ L+ + VG +
Sbjct: 137 DEILKLMLPKQWGIDDVP---------VIVQDK-KFSADGQIDYQLDVMTAAVGWFGDTL 186
Query: 237 NPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHN-MTVVEADGHNV-EPFVVQNLF 294
+ Y P RLR+ + +L+F + + V+ +DG + EP V L
Sbjct: 187 LTNGAIYPQHAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELP 246
Query: 295 IYSGETYSVLIKADQN 310
+ GE + VL++ + N
Sbjct: 247 VLMGERFEVLVEVNDN 262
>pdb|3NSY|A Chain A, The Multi-Copper Oxidase Cueo With Six Met To Ser
Mutations (M358s, M361s,M362s,M364s,M366s,M368s)
Length = 511
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 100/256 (39%), Gaps = 47/256 (18%)
Query: 67 NGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGE 126
NG GP ++ ++ V V++ N L TE +HWHG+ G +G Q I PG
Sbjct: 42 NGNLLGPAVKLQRGKAVTVDIYNQL-TEETTLHWHGLEVPGE-----VDGGPQGIIPPGG 95
Query: 127 TFTYKFVVDRPGTYLY-----HAHYGMQREAGLYGSIRVSLPEGESEPYAYDYDRSIILN 181
+ VD+P + H G Q GL G + +I +
Sbjct: 96 KRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLV-------------------VIED 136
Query: 182 DWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRFNCSS-----LNSPSLNVGIICNET 236
D + + G+ +P +++Q K +F+ L+ + VG +
Sbjct: 137 DEILKLMLPKQWGIDDVP---------VIVQDK-KFSADGQIDYQLDVMTAAVGWFGDTL 186
Query: 237 NPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHN-MTVVEADGHNV-EPFVVQNLF 294
+ Y P RLR+ + +L+F + + V+ +DG + EP V L
Sbjct: 187 LTNGAIYPQHAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELP 246
Query: 295 IYSGETYSVLIKADQN 310
+ GE + VL++ + N
Sbjct: 247 VLMGERFEVLVEVNDN 262
>pdb|1KBW|A Chain A, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|B Chain B, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|C Chain C, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|D Chain D, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|E Chain E, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|F Chain F, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBV|A Chain A, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|B Chain B, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|C Chain C, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|D Chain D, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|E Chain E, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|F Chain F, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
Length = 327
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 69/169 (40%), Gaps = 21/169 (12%)
Query: 40 ARIRRYKWEVKYEYKSPDCFRKVVITINGRTPGPTIQARQNDTVIVELKN---SLLTENV 96
A++R V+ K D T +G PG I+ R+ DTV VE N S + NV
Sbjct: 37 AKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNV 96
Query: 97 AIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYH---AHYGMQREAG 153
H + G PG T T+ F +PG Y+YH A GM G
Sbjct: 97 DFHAATGQGGGA---------AATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANG 147
Query: 154 LYGSIRVSLPEGESEPYAYDYDRSIILNDWFHRSAFEQAAGLSSIPFQW 202
+YG I V EG + D + I+ D++ + + A GL PF
Sbjct: 148 MYGLILVEPKEGLPK---VDKEFYIVQGDFYTKGK-KGAQGLQ--PFDM 190
>pdb|2ZOO|A Chain A, Crystal Structure Of Nitrite Reductase From
Pseudoalteromonas Haloplanktis Tac125
Length = 442
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 110/289 (38%), Gaps = 49/289 (16%)
Query: 34 IVPMAEARIRRYKWEVKYEYKS-----PDCFRKVVITINGRTPGPTIQARQNDTVIVELK 88
+VP A R K + E + D V + PG I+ R+ D + L
Sbjct: 16 MVPPAINRDHSAKVVINLETREQVGRIADGVEYVFWSFGETVPGSFIRVREGDEIEFNLS 75
Query: 89 N---SLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYH-- 143
N S + N+ +H + P T PG T T+ F PG Y+YH
Sbjct: 76 NHPSSKMPHNIDLH-----AVTGPGGGAESSFTA----PGHTSTFNFKALNPGLYIYHCA 126
Query: 144 -AHYGMQREAGLYGSIRVSLPEGESEPYAYDYDRSIILNDWFHRSAFEQAAGLSSIPF-- 200
A GM G+YG I V EG + D + ++ D++ + F + AGL PF
Sbjct: 127 TAPVGMHIANGMYGLILVEPKEGLA---PVDREYYLVQGDFYTKGEFGE-AGLQ--PFDM 180
Query: 201 -QWVGEPQSLLIQGKGRFNCSSLNSPSLNVGIICNETNPECSPYVITVIPGKTYRLRISS 259
+ + E ++ FN S VG +E + +T G+T RL I +
Sbjct: 181 AKAIDEDADYVV-----FNGS--------VGSTTDENS-------LTAKVGETVRLYIGN 220
Query: 260 LTALSALSFQIEGHNMTVVEADGHNVEPFVVQNLFIYSGETYSVLIKAD 308
SF + G V +G +++ VQ I +G V K +
Sbjct: 221 GGPNLVSSFHVIGEIFDTVYVEGGSLKNHNVQTTLIPAGGAAIVEFKVE 269
>pdb|2JFC|A Chain A, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|B Chain B, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|C Chain C, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|D Chain D, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|E Chain E, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|F Chain F, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
Length = 335
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 63 VITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQ 119
+T NG PGPT+ + D V + L N + + NV H G A G +T
Sbjct: 54 AMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH-------GATGALGGAKLTN 106
Query: 120 CPILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSIRVSLPEGESEPYA--YD 173
+ PGE T +F DR GT++YH A GM +GL G++ V +G +P
Sbjct: 107 --VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGLSGTLMVLPRDGLKDPQGKPLH 164
Query: 174 YDRSIILNDW 183
YDR+ + ++
Sbjct: 165 YDRAYTIGEF 174
>pdb|2BP0|A Chain A, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 63 VITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQ 119
+T NG PGPT+ + D V + L N + + NV H G A G +T
Sbjct: 55 AMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH-------GATGALGGAKLTN 107
Query: 120 CPILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSIRVSLPEGESEPYA--YD 173
+ PGE T +F DR GT++YH A GM +GL G++ V +G +P
Sbjct: 108 --VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGLSGTLMVLPRDGLKDPEGKPLH 165
Query: 174 YDRSIILNDW 183
YDR+ + ++
Sbjct: 166 YDRAYTIGEF 175
>pdb|2BP0|B Chain B, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 63 VITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQ 119
+T NG PGPT+ + D V + L N + + NV H G A G +T
Sbjct: 55 AMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH-------GATGALGGAKLTN 107
Query: 120 CPILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSIRVSLPEGESEPYA--YD 173
+ PGE T +F DR GT++YH A GM +GL G++ V +G +P
Sbjct: 108 --VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGLSGTLMVLPRDGLKDPEGKPLH 165
Query: 174 YDRSIILNDW 183
YDR+ + ++
Sbjct: 166 YDRAYTIGEF 175
>pdb|2BO0|A Chain A, Crystal Structure Of The C130a Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 63 VITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQ 119
+T NG PGPT+ + D V + L N + + NV H G A G +T
Sbjct: 55 AMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH-------GATGALGGAKLTN 107
Query: 120 CPILPGETFTYKFVVDRPGTYLYHAH-YGM---QREAGLYGSIRVSLPEGESEPYA--YD 173
+ PGE T +F DR GT++YHA GM +G+ G++ V +G +P
Sbjct: 108 --VNPGEQATLRFKADRSGTFVYHAAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLH 165
Query: 174 YDRSIILNDW 183
YDR+ + ++
Sbjct: 166 YDRAYTIGEF 175
>pdb|1WA0|X Chain X, Crystal Structure Of W138h Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 63 VITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQ 119
+T NG PGPT+ + D V + L N + + NV H G A G +T
Sbjct: 55 AMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH-------GATGALGGAKLTN 107
Query: 120 CPILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSIRVSLPEGESEPYA--YD 173
+ PGE T +F DR GT++YH A GM +G+ G++ V +G +P
Sbjct: 108 --VNPGEQATLRFKADRSGTFVYHCAPEGMVPHHVVSGMSGTLMVLPRDGLKDPQGKPLH 165
Query: 174 YDRSIILNDW 183
YDR+ + ++
Sbjct: 166 YDRAYTIGEF 175
>pdb|1OE2|A Chain A, Atomic Resolution Structure Of D92e Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 63 VITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQ 119
+T NG PGPT+ + D V + L N + + NV H G A G +T
Sbjct: 55 AMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVEFH-------GATGALGGAKLTN 107
Query: 120 CPILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSIRVSLPEGESEPYA--YD 173
+ PGE T +F DR GT++YH A GM +G+ G++ V +G +P
Sbjct: 108 --VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLH 165
Query: 174 YDRSIILNDW 183
YDR+ + ++
Sbjct: 166 YDRAYTIGEF 175
>pdb|2VN3|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 337
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 63 VITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQ 119
+T NG PGPT+ + D V + L N + + NV H G A G +T
Sbjct: 56 AMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH-------GATGALGGAKLTN 108
Query: 120 CPILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSIRVSLPEGESEPYA--YD 173
+ PGE T +F DR GT++YH A GM +G+ G++ V +G +P
Sbjct: 109 --VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLH 166
Query: 174 YDRSIILNDW 183
YDR+ + ++
Sbjct: 167 YDRAYTIGEF 176
>pdb|1NDT|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 336
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 63 VITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQ 119
+T NG PGPT+ + D V + L N + + NV H G A G +T
Sbjct: 55 AMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH-------GATGALGGAKLTN 107
Query: 120 CPILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSIRVSLPEGESEPYA--YD 173
+ PGE T +F DR GT++YH A GM +G+ G++ V +G +P
Sbjct: 108 --VNPGEQATLRFKADRSGTFVYHCAPSGMVPWHVVSGMSGTLMVLPRDGLKDPAGAPLH 165
Query: 174 YDRSIILNDW 183
YDR+ + ++
Sbjct: 166 YDRAYTIGEF 175
>pdb|2XXF|A Chain A, Cu Metallated H254f Mutant Of Nitrite Reductase
pdb|2XXF|B Chain B, Cu Metallated H254f Mutant Of Nitrite Reductase
Length = 336
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 63 VITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQ 119
+T NG PGPT+ + D V + L N + + NV H G A G +T
Sbjct: 55 AMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH-------GATGALGGAKLTN 107
Query: 120 CPILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSIRVSLPEGESEPYA--YD 173
+ PGE T +F DR GT++YH A GM +G+ G++ V +G +P
Sbjct: 108 --VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLH 165
Query: 174 YDRSIILNDW 183
YDR+ + ++
Sbjct: 166 YDRAYTIGEF 175
>pdb|1OE1|A Chain A, Atomic Resolution Structure Of The Wildtype Native Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1OE3|A Chain A, Atomic Resolution Structure Of 'half Apo' Nir
Length = 336
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 63 VITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQ 119
+T NG PGPT+ + D V + L N + + NV H G A G +T
Sbjct: 55 AMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH-------GATGALGGAKLTN 107
Query: 120 CPILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSIRVSLPEGESEPYA--YD 173
+ PGE T +F DR GT++YH A GM +G+ G++ V +G +P
Sbjct: 108 --VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLH 165
Query: 174 YDRSIILNDW 183
YDR+ + ++
Sbjct: 166 YDRAYTIGEF 175
>pdb|1GS7|A Chain A, Crystal Structure Of H254f Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 63 VITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQ 119
+T NG PGPT+ + D V + L N + + NV H G A G +T
Sbjct: 55 AMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH-------GATGALGGAKLTN 107
Query: 120 CPILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSIRVSLPEGESEPYA--YD 173
+ PGE T +F DR GT++YH A GM +G+ G++ V +G +P
Sbjct: 108 --VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLH 165
Query: 174 YDRSIILNDW 183
YDR+ + ++
Sbjct: 166 YDRAYTIGEF 175
>pdb|1HAU|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9 A Resolution
pdb|1HAW|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9a Resolution
pdb|2VM3|A Chain A, Structure Of Alcaligenes Xylosoxidans In Space Group R3 -
1 Of 2
pdb|2VM4|A Chain A, Structure Of Alcaligenes Xylosoxidans Nitrite Reductase In
Space Group R3 - 2 Of 2
pdb|2VW4|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW4|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW6|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW6|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW7|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2VW7|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2ZON|A Chain A, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|B Chain B, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|C Chain C, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
Length = 336
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 63 VITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQ 119
+T NG PGPT+ + D V + L N + + NV H G A G +T
Sbjct: 55 AMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH-------GATGALGGAKLTN 107
Query: 120 CPILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSIRVSLPEGESEPYA--YD 173
+ PGE T +F DR GT++YH A GM +G+ G++ V +G +P
Sbjct: 108 --VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLH 165
Query: 174 YDRSIILNDW 183
YDR+ + ++
Sbjct: 166 YDRAYTIGEF 175
>pdb|1BQ5|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans Gifu 1051
Length = 342
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 63 VITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQ 119
+T NG PGPT+ + D V + L N + + NV H G A G +T
Sbjct: 61 AMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH-------GATGALGGAKLTN 113
Query: 120 CPILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSIRVSLPEGESEPYA--YD 173
+ PGE T +F DR GT++YH A GM +G+ G++ V +G +P
Sbjct: 114 --VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLH 171
Query: 174 YDRSIILNDW 183
YDR+ + ++
Sbjct: 172 YDRAYTIGEF 181
>pdb|1WA1|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
pdb|1WA2|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase With Nitrite Bound
Length = 336
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 63 VITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQ 119
+T NG PGPT+ + D V + L N + + NV H G A G +T
Sbjct: 55 AMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH-------GATGALGGAKLTN 107
Query: 120 CPILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSIRVSLPEGESEPYA--YD 173
+ PGE T +F DR GT++YH A GM +G+ G++ V +G +P
Sbjct: 108 --VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLH 165
Query: 174 YDRSIILNDW 183
YDR+ + ++
Sbjct: 166 YDRAYTIGEF 175
>pdb|2XWZ|A Chain A, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|B Chain B, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|C Chain C, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|D Chain D, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|E Chain E, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|F Chain F, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 63 VITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQ 119
+T NG PGPT+ + D V + L N + + NV H G A G +T
Sbjct: 55 AMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH-------GATGALGGAKLTN 107
Query: 120 CPILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSIRVSLPEGESEPYA--YD 173
+ PGE T +F DR GT++YH A GM +G+ G++ V +G +P
Sbjct: 108 --VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLH 165
Query: 174 YDRSIILNDW 183
YDR+ + ++
Sbjct: 166 YDRAYTIGEF 175
>pdb|1GS8|A Chain A, Crystal Structure Of Mutant D92n Alcaligenes Xylosoxidans
Nitrite Reductase
Length = 336
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 63 VITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQ 119
+T NG PGPT+ + D V + L N + + NV H G A G +T
Sbjct: 55 AMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVNFH-------GATGALGGAKLTN 107
Query: 120 CPILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSIRVSLPEGESEPYA--YD 173
+ PGE T +F DR GT++YH A GM +G+ G++ V +G +P
Sbjct: 108 --VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLH 165
Query: 174 YDRSIILNDW 183
YDR+ + ++
Sbjct: 166 YDRAYTIGEF 175
>pdb|1GS6|X Chain X, Crystal Structure Of M144a Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 18/130 (13%)
Query: 63 VITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQ 119
+T NG PGPT+ + D V + L N + + NV H G A G +T
Sbjct: 55 AMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH-------GATGALGGAKLTN 107
Query: 120 CPILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSIRVSLPEGESEPYA--YD 173
+ PGE T +F DR GT++YH A GM +G G++ V +G +P
Sbjct: 108 --VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGASGTLMVLPRDGLKDPQGKPLH 165
Query: 174 YDRSIILNDW 183
YDR+ + ++
Sbjct: 166 YDRAYTIGEF 175
>pdb|2BP8|A Chain A, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 18/130 (13%)
Query: 63 VITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQ 119
+T NG PGPT+ + D V + L N + + NV H G A G +T
Sbjct: 55 AMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH-------GATGALGGAKLTN 107
Query: 120 CPILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSIRVSLPEGESEPYA--YD 173
+ PGE T +F DR GT++YH A GM +G G++ V +G +P
Sbjct: 108 --VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGQSGTLMVLPRDGLKDPEGKPLH 165
Query: 174 YDRSIILNDW 183
YDR+ + ++
Sbjct: 166 YDRAYTIGEF 175
>pdb|2BP8|B Chain B, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 18/130 (13%)
Query: 63 VITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQ 119
+T NG PGPT+ + D V + L N + + NV H G A G +T
Sbjct: 55 AMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH-------GATGALGGAKLTN 107
Query: 120 CPILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSIRVSLPEGESEPYA--YD 173
+ PGE T +F DR GT++YH A GM +G G++ V +G +P
Sbjct: 108 --VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGQSGTLMVLPRDGLKDPEGKPLH 165
Query: 174 YDRSIILNDW 183
YDR+ + ++
Sbjct: 166 YDRAYTIGEF 175
>pdb|2XXG|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
pdb|2XXG|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
Length = 336
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 63 VITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQ 119
+T NG PGPT+ + D V + L N + + +V H G A G +T
Sbjct: 55 AMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHSVDFH-------GATGALGGAKLTN 107
Query: 120 CPILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSIRVSLPEGESEPYA--YD 173
+ PGE T +F DR GT++YH A GM +G+ G++ V +G +P
Sbjct: 108 --VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLH 165
Query: 174 YDRSIILNDW 183
YDR+ + ++
Sbjct: 166 YDRAYTIGEF 175
>pdb|2XX0|A Chain A, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
pdb|2XX0|B Chain B, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 63 VITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQ 119
+T NG PGPT+ + D V + L N + + +V H G A G +T
Sbjct: 55 AMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHSVDFH-------GATGALGGAKLTN 107
Query: 120 CPILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSIRVSLPEGESEPYA--YD 173
+ PGE T +F DR GT++YH A GM +G+ G++ V +G +P
Sbjct: 108 --VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLH 165
Query: 174 YDRSIILNDW 183
YDR+ + ++
Sbjct: 166 YDRAYTIGEF 175
>pdb|2XX1|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|B Chain B, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|D Chain D, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|E Chain E, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|F Chain F, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 18/130 (13%)
Query: 63 VITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQ 119
+T NG PGPT+ + D V + L N + + +V H G A G +T
Sbjct: 55 AMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHSVDFH-------GATGALGGAKLTN 107
Query: 120 CPILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSIRVSLPEGESEPYA--YD 173
+ PGE T +F DR GT++YH A GM +G+ G++ V +G +P
Sbjct: 108 --VNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLH 165
Query: 174 YDRSIILNDW 183
YDR+ + ++
Sbjct: 166 YDRAYTIGEF 175
>pdb|2VMJ|A Chain A, Type 1 Copper-Binding Loop Of Nitrite Reductase Mutant:
130- Capegmvpwhvvsgm-144 To 130-Ctphpfm-136
Length = 329
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 12/119 (10%)
Query: 63 VITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQ 119
+T NG PGPT+ + D V + L N + + NV H G A G +T
Sbjct: 56 AMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH-------GATGALGGAKLTN 108
Query: 120 CPILPGETFTYKFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPEGESEPYAYDYDRSI 178
+ PGE T +F DR GT++YH L R L + + +P YD +I
Sbjct: 109 --VNPGEQATLRFKADRSGTFVYHCTPHPFMSGTLMVLPRDGLKDPQGKPLHYDRAYTI 165
>pdb|1WAE|A Chain A, Crystal Structure Of H129v Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 18/130 (13%)
Query: 63 VITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQ 119
+T NG PGPT+ + D V + L N + + NV H G A G +T
Sbjct: 55 AMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH-------GATGALGGAKLTN 107
Query: 120 CPILPGETFTYKFVVDRPGTYLY-HAHYGM---QREAGLYGSIRVSLPEGESEPYA--YD 173
+ PGE T +F DR GT++Y A GM +G+ G++ V +G +P
Sbjct: 108 --VNPGEQATLRFKADRSGTFVYVCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPLH 165
Query: 174 YDRSIILNDW 183
YDR+ + ++
Sbjct: 166 YDRAYTIGEF 175
>pdb|1NDR|A Chain A, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|B Chain B, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|C Chain C, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|A Chain A, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|B Chain B, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|C Chain C, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 330
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 58/142 (40%), Gaps = 18/142 (12%)
Query: 44 RYKWEVKYEYKSPDCFRKVVITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHW 100
R E K D +T NG PGPT+ + D + + L N + + NV H
Sbjct: 32 RMSIEEKKMVADDDGTTAQAMTFNGSVPGPTLVVHEGDYIELTLVNPATNSMPHNVDFHA 91
Query: 101 HGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYG 156
G ++PG+ +F DR GT++YH A GM +G+ G
Sbjct: 92 ATGALGGA---------GLTQVVPGQEAVLRFKADRSGTFVYHCAPAGMVPWHVVSGMNG 142
Query: 157 SIRVSLPEG--ESEPYAYDYDR 176
++ V +G ++ A YDR
Sbjct: 143 ALMVLPRDGLRDAAGAALAYDR 164
>pdb|3CG8|A Chain A, Laccase From Streptomyces Coelicolor
pdb|3CG8|B Chain B, Laccase From Streptomyces Coelicolor
pdb|3CG8|C Chain C, Laccase From Streptomyces Coelicolor
Length = 343
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 488 HPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLV--NPIMKNTVPVHRYGWTALRFRADNPG 545
H +H+HGH + + + I P + V N I T P +G+ + G
Sbjct: 231 HTFHMHGHR-----WADNRTGILTGPDDPSRVIDNKI---TGPADSFGFQIIAGEGVGAG 282
Query: 546 AWAFHCHIESHFYMGMGVVF 565
AW +HCH++SH MGM +F
Sbjct: 283 AWMYHCHVQSHSDMGMVGLF 302
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 51/130 (39%), Gaps = 27/130 (20%)
Query: 56 PDCFRKVV---ITINGRTP--GPTIQARQNDTV-IVELKNSLLTENVAIHWHGIRQIGTP 109
PD +V +TIN R P GP +A D V IV + + H HG R
Sbjct: 187 PDATHTIVFNDMTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHT--FHMHGHR----- 239
Query: 110 WADGTEGVTQCP-----------ILPGETFTYKFVVDR---PGTYLYHAHYGMQREAGLY 155
WAD G+ P P ++F ++ + G ++YH H + G+
Sbjct: 240 WADNRTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMV 299
Query: 156 GSIRVSLPEG 165
G V P+G
Sbjct: 300 GLFLVKKPDG 309
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 71 PGPTIQARQNDTVIVELKNSLLTENVAIHWHGIR-QIGTPWADGTEGVTQCPILPGETFT 129
PGP I+ + DT+ +E N++ ++H HG+ +I + DGT + + + PG T T
Sbjct: 75 PGPLIEVNEGDTLHIEFTNTMDVR-ASLHVHGLDYEISS---DGTA-MNKSDVEPGGTRT 129
Query: 130 YKFVVDRPG 138
Y + +PG
Sbjct: 130 YTWRTHKPG 138
>pdb|3TAS|A Chain A, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|B Chain B, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|C Chain C, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TBB|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBC|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone
Length = 313
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 488 HPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTV--PVHRYGWTALRFRADNPG 545
H +HLHGH W G +DP + ++ N + P +G+ + G
Sbjct: 196 HTFHLHGH-RWADNR-TGMLTGPDDPSQ------VIDNKICGPADSFGFQVIAGEGVGAG 247
Query: 546 AWAFHCHIESHFYMGMGVVF 565
AW +HCH++SH MGM +F
Sbjct: 248 AWMYHCHVQSHSDMGMVGLF 267
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 71 PGPTIQARQNDTVIVELKNSLLTENVAIHWHGIR-QIGTPWADGTEGVTQCPILPGETFT 129
PGP I+ + DT+ +E +N++ V++H HG+ +I + DGT+ ++ + PG T T
Sbjct: 40 PGPLIELNEGDTLHIEFENTMDVP-VSLHVHGLDYEISS---DGTK-QSRSDVEPGGTRT 94
Query: 130 YKFVVDRPG 138
Y + PG
Sbjct: 95 YTWRTHVPG 103
>pdb|4GXF|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 279
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 488 HPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRADNPGAW 547
H +H+HGH + + + I P + V K T P +G+ + GAW
Sbjct: 194 HTFHMHGHR-----WADNRTGILTGPDDPSRVID-NKITGPADSFGFQIIAGEGVGAGAW 247
Query: 548 AFHCHIESHFYMGMGVVF 565
+HCH++SH MGM +F
Sbjct: 248 MYHCHVQSHSDMGMVGLF 265
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 51/130 (39%), Gaps = 27/130 (20%)
Query: 56 PDCFRKVV---ITINGRTP--GPTIQARQNDTV-IVELKNSLLTENVAIHWHGIRQIGTP 109
PD +V +TIN R P GP +A D V IV + + H HG R
Sbjct: 150 PDATHTIVFNDMTINNRKPHTGPDFEATVGDRVEIVMITHGEYYH--TFHMHGHR----- 202
Query: 110 WADGTEGVTQCP-----------ILPGETFTYKFVVDR---PGTYLYHAHYGMQREAGLY 155
WAD G+ P P ++F ++ + G ++YH H + G+
Sbjct: 203 WADNRTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMV 262
Query: 156 GSIRVSLPEG 165
G V P+G
Sbjct: 263 GLFLVKKPDG 272
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 71 PGPTIQARQNDTVIVELKNSLLTENVAIHWHGIR-QIGTPWADGTEGVTQCPILPGETFT 129
PGP I+ + DT+ +E N++ ++H HG+ +I +DGT + + + PG T T
Sbjct: 38 PGPLIEVNEGDTLHIEFTNTMDVR-ASLHVHGLDFEIS---SDGTA-MNKSDVEPGGTRT 92
Query: 130 YKFVVDRPG 138
Y + +PG
Sbjct: 93 YTWRTHKPG 101
>pdb|4GY4|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 278
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 488 HPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRADNPGAW 547
H +H+HGH + + + I P + V K T P +G+ + GAW
Sbjct: 193 HTFHMHGHR-----WADNRTGILTGPDDPSRVID-NKITGPADSFGFQIIAGEGVGAGAW 246
Query: 548 AFHCHIESHFYMGMGVVF 565
+HCH++SH MGM +F
Sbjct: 247 MYHCHVQSHSDMGMVGLF 264
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 51/130 (39%), Gaps = 27/130 (20%)
Query: 56 PDCFRKVV---ITINGRTP--GPTIQARQNDTV-IVELKNSLLTENVAIHWHGIRQIGTP 109
PD +V +TIN R P GP +A D V IV + + H HG R
Sbjct: 149 PDATHTIVFNDMTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHT--FHMHGHR----- 201
Query: 110 WADGTEGVTQCP-----------ILPGETFTYKFVVDR---PGTYLYHAHYGMQREAGLY 155
WAD G+ P P ++F ++ + G ++YH H + G+
Sbjct: 202 WADNRTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMV 261
Query: 156 GSIRVSLPEG 165
G V P+G
Sbjct: 262 GLFLVKKPDG 271
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 71 PGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTY 130
PGP I+ + DT+ +E N++ ++H HG+ + +DGT + + + PG T TY
Sbjct: 37 PGPLIEVNEGDTLHIEFTNTMDVR-ASLHVHGLDAEIS--SDGTA-MNKSDVEPGGTRTY 92
Query: 131 KFVVDRPG 138
+ +PG
Sbjct: 93 TWRTHKPG 100
>pdb|1KCB|A Chain A, Crystal Structure Of A No-Forming Nitrite Reductase
Mutant: An Analog Of A Transition State In Enzymatic
Reaction
Length = 340
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 20/121 (16%)
Query: 64 ITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQC 120
+T NG PGP + +ND V + L N + L N+ H G
Sbjct: 62 MTFNGSVPGPLMVVHENDYVELRLINPDTNTLLHNIDFHAATGALGGG---------ALT 112
Query: 121 PILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSI----RVSLPEGESEPYAY 172
+ PGE T +F +PG ++YH A GM +G+ G+I R L + + +P Y
Sbjct: 113 QVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDGLKDEKGQPLTY 172
Query: 173 D 173
D
Sbjct: 173 D 173
>pdb|1NIB|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIB|B Chain B, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIB|C Chain C, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|A Chain A, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|B Chain B, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|C Chain C, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2BW4|A Chain A, Atomic Resolution Structure Of Resting State Of The
Achromobacter Cycloclastes Cu Nitrite Reductase
pdb|2BW5|A Chain A, Atomic Resolution Structure Of No-Bound Achromobacter
Cycloclastes Cu Nitrite Reductase
pdb|2BWD|A Chain A, Atomic Resolution Structure Of Achromobacter Cycloclastes
Cu Nitrite Reductase With Endogenously Bound Nitrite And
No
pdb|2BWI|A Chain A, Atomic Resolution Structure Of Nitrite -Soaked
Achromobacter Cycloclastes Cu Nitrite Reductase
pdb|1NIC|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NID|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIE|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIF|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2NRD|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2Y1A|A Chain A, Crystal Structure Of Achromobacter Cycloclastes Cu Nitrite
Reductase With Bound No
Length = 340
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 20/121 (16%)
Query: 64 ITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQC 120
+T NG PGP + +ND V + L N + L N+ H G
Sbjct: 62 MTFNGSVPGPLMVVHENDYVELRLINPDTNTLLHNIDFHAATGALGGG---------ALT 112
Query: 121 PILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSI----RVSLPEGESEPYAY 172
+ PGE T +F +PG ++YH A GM +G+ G+I R L + + +P Y
Sbjct: 113 QVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDGLKDEKGQPLTY 172
Query: 173 D 173
D
Sbjct: 173 D 173
>pdb|3KW8|A Chain A, Two-Domain Laccase From Streptomyces Coelicolor At 2.3 A
Resolution
Length = 276
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 488 HPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRADNPGAW 547
H +H+HGH + + + I P + V K T P +G+ + GAW
Sbjct: 190 HTFHMHGHR-----WADNRTGILTGPDDPSRVID-NKITGPADSFGFQIIAGEGVGAGAW 243
Query: 548 AFHCHIESHFYMGMGVVF 565
+HCH++SH MGM +F
Sbjct: 244 MYHCHVQSHSDMGMVGLF 261
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 51/130 (39%), Gaps = 27/130 (20%)
Query: 56 PDCFRKVV---ITINGRTP--GPTIQARQNDTV-IVELKNSLLTENVAIHWHGIRQIGTP 109
PD +V +TIN R P GP +A D V IV + + H HG R
Sbjct: 146 PDATHTIVFNDMTINNRKPHTGPDFEATVGDRVEIVMITHGEYYH--TFHMHGHR----- 198
Query: 110 WADGTEGVTQCP-----------ILPGETFTYKFVVDR---PGTYLYHAHYGMQREAGLY 155
WAD G+ P P ++F ++ + G ++YH H + G+
Sbjct: 199 WADNRTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQSHSDMGMV 258
Query: 156 GSIRVSLPEG 165
G V P+G
Sbjct: 259 GLFLVKKPDG 268
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 71 PGPTIQARQNDTVIVELKNSLLTENVAIHWHGIR-QIGTPWADGTEGVTQCPILPGETFT 129
PGP I+ + DT+ +E N++ ++H HG+ +I + DGT + + + PG T T
Sbjct: 34 PGPLIEVNEGDTLHIEFTNTMDVR-ASLHVHGLDYEISS---DGTA-MNKSDVEPGGTRT 88
Query: 130 YKFVVDRPG 138
Y + +PG
Sbjct: 89 YTWRTHKPG 97
>pdb|1RZP|A Chain A, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZP|B Chain B, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZP|C Chain C, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZQ|A Chain A, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
pdb|1RZQ|B Chain B, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
pdb|1RZQ|C Chain C, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
Length = 335
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 20/121 (16%)
Query: 64 ITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQC 120
+T NG PGP + +ND V + L N + L N+ H G
Sbjct: 62 MTFNGSVPGPLMVVHENDYVELRLINPDTNTLLHNIDFHAATGALGGG---------ALT 112
Query: 121 PILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSI----RVSLPEGESEPYAY 172
+ PGE T +F +PG ++YH A GM +G+ G+I R L + + +P Y
Sbjct: 113 QVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDGLKDEKGQPLTY 172
Query: 173 D 173
D
Sbjct: 173 D 173
>pdb|2AVF|A Chain A, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|B Chain B, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|C Chain C, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|D Chain D, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|E Chain E, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|F Chain F, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
Length = 329
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 20/121 (16%)
Query: 64 ITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQC 120
+T NG PGP + +ND V + L N + L N+ H G
Sbjct: 62 MTFNGSVPGPLMVVHENDYVELRLINPDTNTLLHNIDFHAATGALGGG---------ALT 112
Query: 121 PILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSI----RVSLPEGESEPYAY 172
+ PGE T +F +PG ++YH A GM +G+ G+I R L + + +P Y
Sbjct: 113 QVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDGLKDEKGQPLTY 172
Query: 173 D 173
D
Sbjct: 173 D 173
>pdb|3T9W|A Chain A, Small Laccase From Amycolatopsis Sp. Atcc 39116
pdb|3TA4|F Chain F, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|D Chain D, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|E Chain E, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
Length = 299
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 485 SETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRADNP 544
S H +HLHGH + L G DP L++ +K+ P +G+ + P
Sbjct: 209 SNFHTFHLHGHRW--LDNRTGMRTSEYDPSP--LID--IKDLNPGVSFGFQVIAGEGVGP 262
Query: 545 GAWAFHCHIESHFYMGMGVVF 565
G W +HCH+++H MGM +F
Sbjct: 263 GMWMYHCHVQNHSDMGMAGMF 283
>pdb|2DV6|A Chain A, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|B Chain B, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|C Chain C, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|D Chain D, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|E Chain E, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|F Chain F, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
Length = 447
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 45/107 (42%), Gaps = 16/107 (14%)
Query: 65 TINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQCP 121
T NG+ PGP ++ R DTV + LKN SL+ +V H + TQ
Sbjct: 187 TFNGKVPGPFLRVRVGDTVELHLKNHKDSLMVHSVDFHGATGPGGAAAF-------TQTD 239
Query: 122 ILPGETFTYKFVVDRPGTYLYHA---HYGMQREAGLYGSIRVSLPEG 165
PGE F PG Y+YH G+YG + V PEG
Sbjct: 240 --PGEETVVTFKALIPGIYVYHCATPSVPTHITNGMYGLLLVE-PEG 283
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 116 GVTQCPILPGETFTYKFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPEGES 167
GV + PG F +DR G Y+ H + E GL G + V P+ +S
Sbjct: 387 GVQTVSVPPGGATIVDFKIDRAGRYILVDHALSRLEHGLVGFLNVDGPKNDS 438
>pdb|2R7E|A Chain A, Crystal Structure Analysis Of Coagulation Factor Viii
Length = 742
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 19/139 (13%)
Query: 43 RRYKWEVKYEYKSPDCFR-KVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWH 101
R+YK +V++ + + F+ + I GP + DT+++ KN + I+ H
Sbjct: 422 RKYK-KVRFMAYTDETFKTREAIQHESGILGPLLYGEVGDTLLIIFKNQA-SRPYNIYPH 479
Query: 102 GIRQIGTPWA----DGTEGVTQCPILPGETFTYKFVVD----------RPGTYLYHAHYG 147
GI + ++ G + + PILPGE F YK+ V R T Y +
Sbjct: 480 GITDVRPLYSRRLPKGVKHLKDFPILPGEIFKYKWTVTVEDGPTKSDPRCLTRYYSSFVN 539
Query: 148 MQRE--AGLYGSIRVSLPE 164
M+R+ +GL G + + E
Sbjct: 540 MERDLASGLIGPLLICYKE 558
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 19/107 (17%)
Query: 72 GPTIQARQNDTVIVELKNSLLTENVAIHWHGIR----QIGTPWADGTEGVTQ--CPILPG 125
GPTIQA DTV++ LKN + + V++H G+ G + D T + + PG
Sbjct: 74 GPTIQAEVYDTVVITLKN-MASHPVSLHAVGVSYWKASEGAEYDDQTSQREKEDDKVFPG 132
Query: 126 ETFTYKFVVDRPG----------TYLYHAHYGMQRE--AGLYGSIRV 160
+ TY + V + TY Y +H + ++ +GL G++ V
Sbjct: 133 GSHTYVWQVLKENGPMASDPLCLTYSYLSHVDLVKDLNSGLIGALLV 179
>pdb|3CDZ|A Chain A, Crystal Structure Of Human Factor Viii
Length = 754
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 19/139 (13%)
Query: 43 RRYKWEVKYEYKSPDCFR-KVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWH 101
R+YK +V++ + + F+ + I GP + DT+++ KN + I+ H
Sbjct: 421 RKYK-KVRFMAYTDETFKTREAIQHESGILGPLLYGEVGDTLLIIFKNQA-SRPYNIYPH 478
Query: 102 GIRQIGTPWA----DGTEGVTQCPILPGETFTYKFVVD----------RPGTYLYHAHYG 147
GI + ++ G + + PILPGE F YK+ V R T Y +
Sbjct: 479 GITDVRPLYSRRLPKGVKHLKDFPILPGEIFKYKWTVTVEDGPTKSDPRCLTRYYSSFVN 538
Query: 148 MQRE--AGLYGSIRVSLPE 164
M+R+ +GL G + + E
Sbjct: 539 MERDLASGLIGPLLICYKE 557
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 19/107 (17%)
Query: 72 GPTIQARQNDTVIVELKNSLLTENVAIHWHGIR----QIGTPWADGTEGVTQ--CPILPG 125
GPTIQA DTV++ LKN + + V++H G+ G + D T + + PG
Sbjct: 73 GPTIQAEVYDTVVITLKN-MASHPVSLHAVGVSYWKASEGAEYDDQTSQREKEDDKVFPG 131
Query: 126 ETFTYKFVVDRPG----------TYLYHAHYGMQRE--AGLYGSIRV 160
+ TY + V + TY Y +H + ++ +GL G++ V
Sbjct: 132 GSHTYVWQVLKENGPMASDPLCLTYSYLSHVDLVKDLNSGLIGALLV 178
>pdb|2J5W|A Chain A, Ceruloplasmin Revisited: Structural And Functional Roles
Of Various Metal Cation Binding Sites
Length = 1065
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 72 GPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTY 130
GP + A D V + KN + T +IH HG++ TE T P LPGET TY
Sbjct: 809 GPQLHADVGDKVKIIFKN-MATRPYSIHAHGVQ---------TESSTVTPTLPGETLTY 857
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 19/127 (14%)
Query: 72 GPTIQARQNDTVIVELKNSLLTENVAIHWHGI----RQIGTPWADGTEGVTQC--PILPG 125
GP I+A D V V LKN L + H HGI G + D T + + PG
Sbjct: 94 GPIIKAETGDKVYVHLKN-LASRPYTFHSHGITYYKEHEGAIYPDNTTDFQRADDKVYPG 152
Query: 126 ETFTYKFVVDR---PG-------TYLYHAHYGMQRE--AGLYGSIRVSLPEGESEPYAYD 173
E +TY + PG T +YH+H ++ +GL G + + + +
Sbjct: 153 EQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLIICKKDSLDKEKEKH 212
Query: 174 YDRSIIL 180
DR ++
Sbjct: 213 IDREFVV 219
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 17/81 (20%)
Query: 486 ETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRADNPG 545
+ H H HGH F G D+++ I T + L PG
Sbjct: 992 DLHTVHFHGHSFQYKHRGVYSSDVFD----------IFPGT-------YQTLEMFPRTPG 1034
Query: 546 AWAFHCHIESHFYMGMGVVFA 566
W HCH+ H + GM +
Sbjct: 1035 IWLLHCHVTDHIHAGMETTYT 1055
>pdb|1KCW|A Chain A, X-Ray Crystal Structure Of Human Ceruloplasmin At 3.0
Angstroms
Length = 1046
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 72 GPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTY 130
GP + A D V + KN + T +IH HG++ TE T P LPGET TY
Sbjct: 790 GPQLHADVGDKVKIIFKN-MATRPYSIHAHGVQ---------TESSTVTPTLPGETLTY 838
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 19/127 (14%)
Query: 72 GPTIQARQNDTVIVELKNSLLTENVAIHWHGI----RQIGTPWADGTEGVTQC--PILPG 125
GP I+A D V V LKN L + H HGI G + D T + + PG
Sbjct: 75 GPIIKAETGDKVYVHLKN-LASRPYTFHSHGITYYKEHEGAIYPDNTTDFQRADDKVYPG 133
Query: 126 ETFTYKFVVDR---PG-------TYLYHAHYGMQRE--AGLYGSIRVSLPEGESEPYAYD 173
E +TY + PG T +YH+H ++ +GL G + + + +
Sbjct: 134 EQYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASGLIGPLIICKKDSLDKEKEKH 193
Query: 174 YDRSIIL 180
DR ++
Sbjct: 194 IDREFVV 200
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 17/81 (20%)
Query: 486 ETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRADNPG 545
+ H H HGH F G D+++ I T + L PG
Sbjct: 973 DLHTVHFHGHSFQYKHRGVYSSDVFD----------IFPGT-------YQTLEMFPRTPG 1015
Query: 546 AWAFHCHIESHFYMGMGVVFA 566
W HCH+ H + GM +
Sbjct: 1016 IWLLHCHVTDHIHAGMETTYT 1036
>pdb|3H4H|A Chain A, Met94thrPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
pdb|3H4H|B Chain B, Met94thrPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
pdb|3H4H|C Chain C, Met94thrPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
Length = 335
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 20/121 (16%)
Query: 64 ITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQC 120
+ NG PGP + Q+D + + L N + LT N+ H G +
Sbjct: 58 MAFNGTVPGPLMVVHQDDYLELTLINPETNTLTHNIDFHAATGALGGGGLTE-------- 109
Query: 121 PILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSI----RVSLPEGESEPYAY 172
I PGE +F +PG ++YH A GM +G+ G+I R L +G+ + Y
Sbjct: 110 -INPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKALTY 168
Query: 173 D 173
D
Sbjct: 169 D 169
>pdb|2FQW|A Chain A, Pnra From Treponema Pallidum As Purified From E. Coli
(Bound To Inosine)
pdb|2FQX|A Chain A, Pnra From Treponema Pallidum Complexed With Guanosine
pdb|2FQY|A Chain A, Pnra From Treponema Pallidum Complexed With Adenosine
Length = 318
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 466 FNSTVDIILQNANSLSNKT-SETHPWHLHGHDFWVLGYGEGKF--DIYNDPKKYNLVNPI 522
++S V++I Q A N E L+G D WV+G ++ +Y+ K L + +
Sbjct: 185 YDSGVNVIFQVAGGTGNGVIKEARDRRLNGQDVWVIGVDRDQYMDGVYDGSKSVVLTSMV 244
Query: 523 MKNTVPVHRYGWTALRFRADNPGAWAFHCHIESH 556
+ V R + + + PG + +E
Sbjct: 245 KRADVAAERI--SKMAYDGSFPGGQSIMFGLEDK 276
>pdb|3H56|A Chain A, Met150leuPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
Length = 336
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 20/121 (16%)
Query: 64 ITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQC 120
+ NG PGP + Q+D + + L N + L N+ H G +
Sbjct: 59 MAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGALGGGGLTE-------- 110
Query: 121 PILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSI----RVSLPEGESEPYAY 172
I PGE +F +PG ++YH A GM +GL G+I R L +G+ + Y
Sbjct: 111 -INPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGLNGAIMVLPREGLHDGKGKALTY 169
Query: 173 D 173
D
Sbjct: 170 D 170
>pdb|3AEH|A Chain A, Integral Membrane Domain Of Autotransporter Hbp
pdb|3AEH|B Chain B, Integral Membrane Domain Of Autotransporter Hbp
Length = 308
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 205 EPQSLLIQGKGRFNCSSLNSPSLNVGIICNETNPECSPYVITVIPGKTYRLRISSLTALS 264
EPQ+ L+ G+ + + N ++V + N NP V+ GKT+ + SLTA +
Sbjct: 174 EPQAELVWGRLQGQTFNWNDSGMDVSMRRNSVNPLVGR--TGVVSGKTFSGKDWSLTARA 231
Query: 265 ALSFQIE 271
L ++ +
Sbjct: 232 GLHYEFD 238
>pdb|3H4F|A Chain A, Met62leu Variant Of Nitrite Reductase From Alcaligenes
Faeclis
pdb|3H4F|B Chain B, Met62leu Variant Of Nitrite Reductase From Alcaligenes
Faeclis
pdb|3H4F|C Chain C, Met62leu Variant Of Nitrite Reductase From Alcaligenes
Faeclis
Length = 336
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 20/121 (16%)
Query: 64 ITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQC 120
+ NG PGP + Q+D + + L N + L N+ H G +
Sbjct: 59 LAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGALGGGGLTE-------- 110
Query: 121 PILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSI----RVSLPEGESEPYAY 172
I PGE +F +PG ++YH A GM +G+ G+I R L +G+ + Y
Sbjct: 111 -INPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKALTY 169
Query: 173 D 173
D
Sbjct: 170 D 170
>pdb|2FJS|A Chain A, Crystal Structure Of Anaerobically Reduced Wild Type
Nitrite Reductase From A. Faecalis
pdb|2FJS|B Chain B, Crystal Structure Of Anaerobically Reduced Wild Type
Nitrite Reductase From A. Faecalis
pdb|2FJS|C Chain C, Crystal Structure Of Anaerobically Reduced Wild Type
Nitrite Reductase From A. Faecalis
pdb|2E86|A Chain A, Azide Bound To Copper Containing Nitrite Reductase From A.
Faecalis S- 6
pdb|2E86|B Chain B, Azide Bound To Copper Containing Nitrite Reductase From A.
Faecalis S- 6
pdb|2E86|C Chain C, Azide Bound To Copper Containing Nitrite Reductase From A.
Faecalis S- 6
Length = 337
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 20/121 (16%)
Query: 64 ITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQC 120
+ NG PGP + Q+D + + L N + L N+ H G +
Sbjct: 59 MAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGALGGGGLTE-------- 110
Query: 121 PILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSI----RVSLPEGESEPYAY 172
I PGE +F +PG ++YH A GM +G+ G+I R L +G+ + Y
Sbjct: 111 -INPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKALTY 169
Query: 173 D 173
D
Sbjct: 170 D 170
>pdb|2AFN|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase And A
Copper Site Mutant, M150e, That Contains Zinc
pdb|2AFN|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase And A
Copper Site Mutant, M150e, That Contains Zinc
pdb|2AFN|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase And A
Copper Site Mutant, M150e, That Contains Zinc
pdb|1AQ8|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
pdb|1AQ8|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
pdb|1AQ8|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
pdb|1AS6|A Chain A, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS6|B Chain B, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS6|C Chain C, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS7|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS7|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS7|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS8|A Chain A, Structure Of Nitrite Bound To Reduced Alcaligenes Faecalis
Nitrite Reductase At Cryo Temperature
pdb|1AS8|B Chain B, Structure Of Nitrite Bound To Reduced Alcaligenes Faecalis
Nitrite Reductase At Cryo Temperature
pdb|1AS8|C Chain C, Structure Of Nitrite Bound To Reduced Alcaligenes Faecalis
Nitrite Reductase At Cryo Temperature
Length = 343
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 20/121 (16%)
Query: 64 ITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQC 120
+ NG PGP + Q+D + + L N + L N+ H G +
Sbjct: 65 MAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGALGGGGLTE-------- 116
Query: 121 PILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSI----RVSLPEGESEPYAY 172
I PGE +F +PG ++YH A GM +G+ G+I R L +G+ + Y
Sbjct: 117 -INPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKALTY 175
Query: 173 D 173
D
Sbjct: 176 D 176
>pdb|1ET8|A Chain A, Crystal Structure Of Nitrite Reductase His255asn Mutant
From Alcaligenes Faecalis
pdb|1J9S|A Chain A, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9S|B Chain B, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9S|C Chain C, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9T|A Chain A, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
pdb|1J9T|B Chain B, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
pdb|1J9T|C Chain C, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
Length = 341
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 20/121 (16%)
Query: 64 ITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQC 120
+ NG PGP + Q+D + + L N + L N+ H G +
Sbjct: 59 MAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGALGGGGLTE-------- 110
Query: 121 PILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSI----RVSLPEGESEPYAY 172
I PGE +F +PG ++YH A GM +G+ G+I R L +G+ + Y
Sbjct: 111 -INPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKALTY 169
Query: 173 D 173
D
Sbjct: 170 D 170
>pdb|1SJM|A Chain A, Nitrite Bound Copper Containing Nitrite Reductase
pdb|1SJM|B Chain B, Nitrite Bound Copper Containing Nitrite Reductase
pdb|1SJM|C Chain C, Nitrite Bound Copper Containing Nitrite Reductase
pdb|1SNR|A Chain A, Nitric Oxide Bound To Cu Nitrite Reductase
pdb|1SNR|B Chain B, Nitric Oxide Bound To Cu Nitrite Reductase
pdb|1SNR|C Chain C, Nitric Oxide Bound To Cu Nitrite Reductase
pdb|2P80|A Chain A, Solution Structure Of The Complex Between Nitrite
Reductase And Pseudoazurin From A. Faecalis
pdb|2P80|B Chain B, Solution Structure Of The Complex Between Nitrite
Reductase And Pseudoazurin From A. Faecalis
pdb|2P80|C Chain C, Solution Structure Of The Complex Between Nitrite
Reductase And Pseudoazurin From A. Faecalis
pdb|2PP7|A Chain A, Crystal Structure Of Anaerobically Manipulated Wild Type
Oxidized Afnir (acetate Bound)
pdb|2PP7|B Chain B, Crystal Structure Of Anaerobically Manipulated Wild Type
Oxidized Afnir (acetate Bound)
pdb|2PP7|C Chain C, Crystal Structure Of Anaerobically Manipulated Wild Type
Oxidized Afnir (acetate Bound)
pdb|2PP8|A Chain A, Formate Bound To Oxidized Wild Type Afnir
pdb|2PP8|B Chain B, Formate Bound To Oxidized Wild Type Afnir
pdb|2PP8|C Chain C, Formate Bound To Oxidized Wild Type Afnir
pdb|2PP9|A Chain A, Nitrate Bound Wild Type Oxidized Afnir
pdb|2PP9|B Chain B, Nitrate Bound Wild Type Oxidized Afnir
pdb|2PP9|C Chain C, Nitrate Bound Wild Type Oxidized Afnir
pdb|2PPA|A Chain A, Anaerobically Manipulated Wild Type Oxidized Afnir Bound
To Nitrous Oxide
pdb|2PPA|B Chain B, Anaerobically Manipulated Wild Type Oxidized Afnir Bound
To Nitrous Oxide
pdb|2PPA|C Chain C, Anaerobically Manipulated Wild Type Oxidized Afnir Bound
To Nitrous Oxide
pdb|2PPC|A Chain A, Oxidized Wild Type Afnir Exposed To No (Nitrite Bound)
pdb|2PPC|B Chain B, Oxidized Wild Type Afnir Exposed To No (Nitrite Bound)
pdb|2PPC|C Chain C, Oxidized Wild Type Afnir Exposed To No (Nitrite Bound)
Length = 341
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 20/121 (16%)
Query: 64 ITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQC 120
+ NG PGP + Q+D + + L N + L N+ H G +
Sbjct: 59 MAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGALGGGGLTE-------- 110
Query: 121 PILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSI----RVSLPEGESEPYAY 172
I PGE +F +PG ++YH A GM +G+ G+I R L +G+ + Y
Sbjct: 111 -INPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKALTY 169
Query: 173 D 173
D
Sbjct: 170 D 170
>pdb|1L9T|A Chain A, Crystal Structure Of The I257v Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9T|B Chain B, Crystal Structure Of The I257v Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9T|C Chain C, Crystal Structure Of The I257v Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 20/121 (16%)
Query: 64 ITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQC 120
+ NG PGP + Q+D + + L N + L N+ H G +
Sbjct: 59 MAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGALGGGGLTE-------- 110
Query: 121 PILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSI----RVSLPEGESEPYAY 172
I PGE +F +PG ++YH A GM +G+ G+I R L +G+ + Y
Sbjct: 111 -INPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKALTY 169
Query: 173 D 173
D
Sbjct: 170 D 170
>pdb|1L9Q|A Chain A, Crystal Structure Of The I257l Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9Q|B Chain B, Crystal Structure Of The I257l Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9Q|C Chain C, Crystal Structure Of The I257l Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 20/121 (16%)
Query: 64 ITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQC 120
+ NG PGP + Q+D + + L N + L N+ H G +
Sbjct: 59 MAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGALGGGGLTE-------- 110
Query: 121 PILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSI----RVSLPEGESEPYAY 172
I PGE +F +PG ++YH A GM +G+ G+I R L +G+ + Y
Sbjct: 111 -INPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKALTY 169
Query: 173 D 173
D
Sbjct: 170 D 170
>pdb|1ET7|A Chain A, Crystal Structure Of Nitrite Reductase His255asp Mutant
From Alcaligenes Faecalis S-6
Length = 341
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 20/121 (16%)
Query: 64 ITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQC 120
+ NG PGP + Q+D + + L N + L N+ H G +
Sbjct: 59 MAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGALGGGGLTE-------- 110
Query: 121 PILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSI----RVSLPEGESEPYAY 172
I PGE +F +PG ++YH A GM +G+ G+I R L +G+ + Y
Sbjct: 111 -INPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKALTY 169
Query: 173 D 173
D
Sbjct: 170 D 170
>pdb|1L9R|A Chain A, Crystal Structure Of The I257m Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9R|B Chain B, Crystal Structure Of The I257m Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9R|C Chain C, Crystal Structure Of The I257m Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 20/121 (16%)
Query: 64 ITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQC 120
+ NG PGP + Q+D + + L N + L N+ H G +
Sbjct: 59 MAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGALGGGGLTE-------- 110
Query: 121 PILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSI----RVSLPEGESEPYAY 172
I PGE +F +PG ++YH A GM +G+ G+I R L +G+ + Y
Sbjct: 111 -INPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKALTY 169
Query: 173 D 173
D
Sbjct: 170 D 170
>pdb|1L9O|A Chain A, Crystal Structure Of Nitrite Soaked I257a Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalis
pdb|1L9O|B Chain B, Crystal Structure Of Nitrite Soaked I257a Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalis
pdb|1L9O|C Chain C, Crystal Structure Of Nitrite Soaked I257a Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalis
Length = 341
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 20/121 (16%)
Query: 64 ITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQC 120
+ NG PGP + Q+D + + L N + L N+ H G +
Sbjct: 59 MAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGALGGGGLTE-------- 110
Query: 121 PILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSI----RVSLPEGESEPYAY 172
I PGE +F +PG ++YH A GM +G+ G+I R L +G+ + Y
Sbjct: 111 -INPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKALTY 169
Query: 173 D 173
D
Sbjct: 170 D 170
>pdb|1L9S|A Chain A, Crystal Structure Of The I257t Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9S|B Chain B, Crystal Structure Of The I257t Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9S|C Chain C, Crystal Structure Of The I257t Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 20/121 (16%)
Query: 64 ITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQC 120
+ NG PGP + Q+D + + L N + L N+ H G +
Sbjct: 59 MAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGALGGGGLTE-------- 110
Query: 121 PILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSI----RVSLPEGESEPYAY 172
I PGE +F +PG ++YH A GM +G+ G+I R L +G+ + Y
Sbjct: 111 -INPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKALTY 169
Query: 173 D 173
D
Sbjct: 170 D 170
>pdb|1L9P|A Chain A, Crystal Structure Of Nitrite Soaked I257g Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalies S-6
pdb|1L9P|B Chain B, Crystal Structure Of Nitrite Soaked I257g Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalies S-6
pdb|1L9P|C Chain C, Crystal Structure Of Nitrite Soaked I257g Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalies S-6
Length = 341
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 20/121 (16%)
Query: 64 ITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQC 120
+ NG PGP + Q+D + + L N + L N+ H G +
Sbjct: 59 MAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGALGGGGLTE-------- 110
Query: 121 PILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSI----RVSLPEGESEPYAY 172
I PGE +F +PG ++YH A GM +G+ G+I R L +G+ + Y
Sbjct: 111 -INPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKALTY 169
Query: 173 D 173
D
Sbjct: 170 D 170
>pdb|1ET5|A Chain A, Crystal Structure Of Nitrite Reductase Asp98asn Mutant
From Alcaligenes Faecalis S-6
pdb|1J9Q|A Chain A, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1J9Q|B Chain B, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1J9Q|C Chain C, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1J9R|A Chain A, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
pdb|1J9R|B Chain B, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
pdb|1J9R|C Chain C, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
pdb|2PPF|A Chain A, Reduced Mutant D98n Of Afnir Exposed To Nitric Oxide
pdb|2PPF|B Chain B, Reduced Mutant D98n Of Afnir Exposed To Nitric Oxide
pdb|2PPF|C Chain C, Reduced Mutant D98n Of Afnir Exposed To Nitric Oxide
Length = 341
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 20/121 (16%)
Query: 64 ITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQC 120
+ NG PGP + Q+D + + L N + L N+ H G +
Sbjct: 59 MAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNINFHAATGALGGGGLTE-------- 110
Query: 121 PILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSI----RVSLPEGESEPYAY 172
I PGE +F +PG ++YH A GM +G+ G+I R L +G+ + Y
Sbjct: 111 -INPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLHDGKGKALTY 169
Query: 173 D 173
D
Sbjct: 170 D 170
>pdb|1NPJ|A Chain A, Crystal Structure Of H145a Mutant Of Nitrite Reductase
From Alcaligenes Faecalis
pdb|1NPJ|B Chain B, Crystal Structure Of H145a Mutant Of Nitrite Reductase
From Alcaligenes Faecalis
pdb|1NPJ|C Chain C, Crystal Structure Of H145a Mutant Of Nitrite Reductase
From Alcaligenes Faecalis
pdb|1NPN|A Chain A, Crystal Structure Of A Copper Reconstituted H145a Mutant
Of Nitrite Reductase From Alcaligenes Faecalis
pdb|1NPN|B Chain B, Crystal Structure Of A Copper Reconstituted H145a Mutant
Of Nitrite Reductase From Alcaligenes Faecalis
pdb|1NPN|C Chain C, Crystal Structure Of A Copper Reconstituted H145a Mutant
Of Nitrite Reductase From Alcaligenes Faecalis
pdb|2PPD|A Chain A, Oxidized H145a Mutant Of Afnir Bound To Nitric Oxide
pdb|2PPD|B Chain B, Oxidized H145a Mutant Of Afnir Bound To Nitric Oxide
pdb|2PPD|C Chain C, Oxidized H145a Mutant Of Afnir Bound To Nitric Oxide
pdb|2PPE|A Chain A, Reduced H145a Mutant Of Afnir Exposed To No
pdb|2PPE|B Chain B, Reduced H145a Mutant Of Afnir Exposed To No
pdb|2PPE|C Chain C, Reduced H145a Mutant Of Afnir Exposed To No
Length = 343
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 20/121 (16%)
Query: 64 ITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQC 120
+ NG PGP + Q+D + + L N + L N+ H G +
Sbjct: 65 MAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGALGGGGLTE-------- 116
Query: 121 PILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSI----RVSLPEGESEPYAY 172
I PGE +F +PG ++YH A GM +G+ G+I R L +G+ + Y
Sbjct: 117 -INPGEKTILRFKATKPGVFVYHCAPPGMVPWAVVSGMNGAIMVLPREGLHDGKGKALTY 175
Query: 173 D 173
D
Sbjct: 176 D 176
>pdb|1NTD|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase Mutant
M150e That Contains Zinc
Length = 343
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 20/121 (16%)
Query: 64 ITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQC 120
+ NG PGP + Q+D + + L N + L N+ H G +
Sbjct: 65 MAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGALGGGGLTE-------- 116
Query: 121 PILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSI----RVSLPEGESEPYAY 172
I PGE +F +PG ++YH A GM +G G+I R L +G+ + Y
Sbjct: 117 -INPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGENGAIMVLPREGLHDGKGKALTY 175
Query: 173 D 173
D
Sbjct: 176 D 176
>pdb|1ZDQ|A Chain A, Crystal Structure Of Met150gly Afnir With Methylsulfanyl
Methane Bound
pdb|1ZDQ|B Chain B, Crystal Structure Of Met150gly Afnir With Methylsulfanyl
Methane Bound
pdb|1ZDQ|C Chain C, Crystal Structure Of Met150gly Afnir With Methylsulfanyl
Methane Bound
pdb|1ZDS|A Chain A, Crystal Structure Of Met150gly Afnir With Acetamide Bound
pdb|1ZDS|B Chain B, Crystal Structure Of Met150gly Afnir With Acetamide Bound
pdb|1ZDS|C Chain C, Crystal Structure Of Met150gly Afnir With Acetamide Bound
Length = 336
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 20/121 (16%)
Query: 64 ITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQC 120
+ NG PGP + Q+D + + L N + L N+ H G +
Sbjct: 59 MAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGALGGGGLTE-------- 110
Query: 121 PILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSI----RVSLPEGESEPYAY 172
I PGE +F +PG ++YH A GM +G G+I R L +G+ + Y
Sbjct: 111 -INPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGGNGAIMVLPREGLHDGKGKALTY 169
Query: 173 D 173
D
Sbjct: 170 D 170
>pdb|2B08|A Chain A, Reduced Acetamide-Bound M150g Nitrite Reductase From
Alcaligenes Faecalis
pdb|2B08|B Chain B, Reduced Acetamide-Bound M150g Nitrite Reductase From
Alcaligenes Faecalis
pdb|2B08|C Chain C, Reduced Acetamide-Bound M150g Nitrite Reductase From
Alcaligenes Faecalis
Length = 340
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 20/121 (16%)
Query: 64 ITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQC 120
+ NG PGP + Q+D + + L N + L N+ H G +
Sbjct: 62 MAFNGTVPGPLMVVHQDDYLELTLINPETNTLMHNIDFHAATGALGGGGLTE-------- 113
Query: 121 PILPGETFTYKFVVDRPGTYLYH-AHYGM---QREAGLYGSI----RVSLPEGESEPYAY 172
I PGE +F +PG ++YH A GM +G G+I R L +G+ + Y
Sbjct: 114 -INPGEKTILRFKATKPGVFVYHCAPPGMVPWHVVSGGNGAIMVLPREGLHDGKGKALTY 172
Query: 173 D 173
D
Sbjct: 173 D 173
>pdb|3GYR|A Chain A, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|B Chain B, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|C Chain C, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|D Chain D, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|E Chain E, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|F Chain F, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|G Chain G, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|H Chain H, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|I Chain I, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|J Chain J, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|K Chain K, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|L Chain L, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center
Length = 612
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 16/90 (17%)
Query: 488 HPWHLHGHDFWVLG---YGEGKFDIY----NDPKKYNLVNPI------MKNTVPVHRYGW 534
HP H+H DF VLG Y FD+ P + + P+ + + G
Sbjct: 494 HPMHIHLADFQVLGRDAYDASGFDLALGGTRTPVRLDPDTPVPLAPNELGHKDVFQVPGP 553
Query: 535 TALRFRADNPGAWA---FHCHIESHFYMGM 561
LR GA+ +HCH+ H MGM
Sbjct: 554 QGLRVMGKFDGAYGRFMYHCHLLEHEDMGM 583
>pdb|4AKO|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: E498l Mutant
Length = 507
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 18/97 (18%)
Query: 479 SLSNKTSETHPWHLHGHDFWVLGYGEGKFDI--YNDPKKYNLVNPIM---------KNTV 527
S+ N T THP HLH F VL FDI Y + + + P + K+T+
Sbjct: 406 SIINPTRGTHPIHLHLVSFRVL--DRRPFDIARYQESGELSYTGPAVPPPPSEKGWKDTI 463
Query: 528 PVHRYGWTALRFRAD---NPGAWAFHCHIESHFYMGM 561
H LR A G + +HCHI H M
Sbjct: 464 QAH--AGEVLRIAATFGPYSGRYVWHCHILEHLDYDM 498
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 104/271 (38%), Gaps = 54/271 (19%)
Query: 67 NGRTPGPTIQARQNDTVIVELKNSLLTEN-----------------VAIHWHG----IRQ 105
NG PGPTI+ ++N+ V V+ N+L + + +H HG
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSEEPEVKTVVHLHGGVTPDDS 111
Query: 106 IGTPWADGTEGVTQC-PILPGETFTYKFVVDRPGTYLYHAH-YGMQR---EAGLYGSIRV 160
G P A ++ Q P E + Y R YH H + R AGL G+ +
Sbjct: 112 DGYPEAWFSKDFEQTGPYFKREVYHYPN-QQRGAILWYHDHAMALTRLNVYAGLVGAYII 170
Query: 161 SLPEGESEPYAYD-YDRSIILNDWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRFNC 219
P+ + D YD +++ D + + E SL
Sbjct: 171 HDPKEKRLKLPSDEYDVPLLITD------------------RTINEDGSLFYPSAPENPS 212
Query: 220 SSLNSPSLNVGIICNET---NPECSPYVITVIPGKTYRLRISSLTALSALSFQIE-GHNM 275
SL +PS+ V C ET N + PY + V P K YR R+ + + + ++ G +
Sbjct: 213 PSLPNPSI-VPAFCGETILVNGKVWPY-LEVEPRK-YRFRVINASNTRTYNLSLDNGGDF 269
Query: 276 TVVEADGHNVEPFVVQNLF-IYSGETYSVLI 305
+ +DG + V N F + E Y ++I
Sbjct: 270 IQIGSDGGLLPRSVKLNSFSLAPAERYDIII 300
>pdb|2UXT|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXT|B Chain B, Sufi Protein From Escherichia Coli
pdb|2UXV|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXV|B Chain B, Sufi Protein From Escherichia Coli
Length = 451
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 13/90 (14%)
Query: 60 RKVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIR----QIGTPWADGTE 115
R V INGR GPTI+ + D V + N LTENV++ G++ +G P +
Sbjct: 37 RASVWGINGRYLGPTIRVWKGDDVKLIYSNR-LTENVSMTVAGLQVPGPLMGGPARMMSP 95
Query: 116 GVTQCPILPGETFTYKFVVDRPGTYLYHAH 145
P+LP + T YHA+
Sbjct: 96 NADWAPVLP--------IRQNAATLWYHAN 117
>pdb|1N70|A Chain A, The Crystal Structure Of Nitrite Reductase Mutant
His287ala From Rhodobacter Sphaeroides
Length = 334
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 25/147 (17%)
Query: 39 EARIRRYKWEVKYEYKSPDCFRKVVITINGRTPGPTIQARQNDTVIVELKN---SLLTEN 95
E +R + EV+ + D + + +T +G PGP + + D V + L N + + N
Sbjct: 32 EFEMRIIEKEVQLD---EDAYLQA-MTFDGSIPGPLMIVHEGDYVELTLINPPENTMPHN 87
Query: 96 VAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAHYGM-----QR 150
+ H G I PGE +F R G ++YH G
Sbjct: 88 IDFHAATGALGGG---------GLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHV 138
Query: 151 EAGLYGSI----RVSLPEGESEPYAYD 173
+G+ G I R L + E +P YD
Sbjct: 139 VSGMAGCIMVLPRDGLKDHEGKPVRYD 165
>pdb|2DWT|A Chain A, Cu-Containing Nitrite Reductase At Ph 6.0 With Bound
Nitrite
pdb|2DY2|A Chain A, Nitrite Reductase Ph 6.0
Length = 329
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 21/122 (17%)
Query: 64 ITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQC 120
+T +G PGP + + D V + L N + + N+ H G
Sbjct: 50 MTFDGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFHAATGALGGG---------GLT 100
Query: 121 PILPGETFTYKFVVDRPGTYLYHAHYG-----MQREAGLYGSI----RVSLPEGESEPYA 171
I PGE +F R G ++YH G +G+ G I R L + E +P
Sbjct: 101 LINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSGMAGCIMVLPRDGLKDHEGKPVR 160
Query: 172 YD 173
YD
Sbjct: 161 YD 162
>pdb|1MZY|A Chain A, Crystal Structure Of Nitrite Reductase
Length = 333
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 21/122 (17%)
Query: 64 ITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQC 120
+T +G PGP + + D V + L N + + N+ H G
Sbjct: 55 MTFDGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFHAATGALGGG---------GLT 105
Query: 121 PILPGETFTYKFVVDRPGTYLYHAHYG-----MQREAGLYGSI----RVSLPEGESEPYA 171
I PGE +F R G ++YH G +G+ G I R L + E +P
Sbjct: 106 LINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSGMAGCIMVLPRDGLKDHEGKPVR 165
Query: 172 YD 173
YD
Sbjct: 166 YD 167
>pdb|1ZV2|A Chain A, Cu-Containing Nitrite Reductase
pdb|2A3T|A Chain A, Cu-containing Nitrite Reductase
pdb|2DWS|A Chain A, Cu-containing Nitrite Reductase At Ph 8.4 With Bound
Nitrite
Length = 328
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 21/122 (17%)
Query: 64 ITINGRTPGPTIQARQNDTVIVELKN---SLLTENVAIHWHGIRQIGTPWADGTEGVTQC 120
+T +G PGP + + D V + L N + + N+ H G
Sbjct: 50 MTFDGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFHAATGALGGG---------GLT 100
Query: 121 PILPGETFTYKFVVDRPGTYLYHAHYG-----MQREAGLYGSI----RVSLPEGESEPYA 171
I PGE +F R G ++YH G +G+ G I R L + E +P
Sbjct: 101 LINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSGMAGCIMVLPRDGLKDHEGKPVR 160
Query: 172 YD 173
YD
Sbjct: 161 YD 162
>pdb|4AKP|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase
Trinuclear Site:e498t Mutant
Length = 513
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 34 IVPMAEARIRRYKWEVKYEYKSPDCFRKVVIT----INGRTPGPTIQARQNDTVIVELKN 89
+ P+ +++ + Y +EV E + R + T NG PGPTI+ ++N+ V V+ N
Sbjct: 16 LKPVQQSKEKTY-YEVTMEEXTHQLHRDLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMN 74
Query: 90 SL 91
+L
Sbjct: 75 NL 76
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 18/92 (19%)
Query: 479 SLSNKTSETHPWHLHGHDFWVLGYGEGKFDI--YNDPKKYNLVNPIM---------KNTV 527
S+ N T THP HLH F VL FDI Y + + + P + K+T+
Sbjct: 410 SIINPTRGTHPIHLHLVSFRVL--DRRPFDIARYQESGELSYTGPAVPPPPSEKGWKDTI 467
Query: 528 PVHRYGWTALRFRAD---NPGAWAFHCHIESH 556
H LR A G + +HCHI H
Sbjct: 468 QAH--AGEVLRIAATFGPYSGRYVWHCHILEH 497
>pdb|2X87|A Chain A, Crystal Structure Of The Reconstituted Cota
Length = 513
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 34 IVPMAEARIRRYKWEVKYEYKSPDCFRKVVIT----INGRTPGPTIQARQNDTVIVELKN 89
+ P+ +++ + Y +EV E + R + T NG PGPTI+ ++N+ V V+ N
Sbjct: 16 LKPVQQSKEKTY-YEVTMEEXTHQLHRDLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMN 74
Query: 90 SL 91
+L
Sbjct: 75 NL 76
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 18/92 (19%)
Query: 479 SLSNKTSETHPWHLHGHDFWVLGYGEGKFDI--YNDPKKYNLVNPIM---------KNTV 527
S+ N T THP HLH F VL FDI Y + + + P + K+T+
Sbjct: 410 SIINPTRGTHPIHLHLVSFRVL--DRRPFDIARYQESGELSYTGPAVPPPPSEKGWKDTI 467
Query: 528 PVHRYGWTALRFRAD---NPGAWAFHCHIESH 556
H LR A G + +HCHI H
Sbjct: 468 QAH--AGEVLRIAATFGPYSGRYVWHCHILEH 497
>pdb|2WSD|A Chain A, Proximal Mutations At The Type 1 Cu Site Of
Cota-Laccase: I494a Mutant
Length = 513
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 34 IVPMAEARIRRYKWEVKYEYKSPDCFRKVVIT----INGRTPGPTIQARQNDTVIVELKN 89
+ P+ +++ + Y +EV E + R + T NG PGPTI+ ++N+ V V+ N
Sbjct: 16 LKPVQQSKEKTY-YEVTMEEXTHQLHRDLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMN 74
Query: 90 SL 91
+L
Sbjct: 75 NL 76
>pdb|4A67|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase
Trinuclear Site: D116e Mutant
Length = 513
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 34 IVPMAEARIRRYKWEVKYEYKSPDCFRKVVIT----INGRTPGPTIQARQNDTVIVELKN 89
+ P+ +++ + Y +EV E + R + T NG PGPTI+ ++N+ V V+ N
Sbjct: 16 LKPVQQSKEKTY-YEVTMEEXTHQLHRDLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMN 74
Query: 90 SL 91
+L
Sbjct: 75 NL 76
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 18/92 (19%)
Query: 479 SLSNKTSETHPWHLHGHDFWVLGYGEGKFDI--YNDPKKYNLVNPIM---------KNTV 527
S+ N T THP HLH F VL FDI Y + + + P + K+T+
Sbjct: 410 SIINPTRGTHPIHLHLVSFRVL--DRRPFDIARYQESGELSYTGPAVPPPPSEKGWKDTI 467
Query: 528 PVHRYGWTALRFRAD---NPGAWAFHCHIESH 556
H LR A G + +HCHI H
Sbjct: 468 QAH--AGEVLRIAATFGPYSGRYVWHCHILEH 497
>pdb|4A66|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: D116a Mutant
Length = 513
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 72/312 (23%), Positives = 120/312 (38%), Gaps = 63/312 (20%)
Query: 34 IVPMAEARIRRYKWEVKYEYKSPDCFRKVVIT----INGRTPGPTIQARQNDTVIVELKN 89
+ P+ +++ + Y +EV E + R + T NG PGPTI+ ++N+ V V+ N
Sbjct: 16 LKPVQQSKEKTY-YEVTMEECTHQLHRDLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMN 74
Query: 90 SLLTEN---------------------VAIHWHG----IRQIGTPWADGTEGVTQC-PIL 123
+L + + +H HG G P A ++ Q P
Sbjct: 75 NLPSTHFLPIDHTIHHSDSQHEEPEVKTVVHLHGGVTPDDSAGYPEAWFSKDFEQTGPYF 134
Query: 124 PGETFTYKFVVDRPGTYLYHAH-YGMQR---EAGLYGSIRVSLPEGESEPYAYD-YDRSI 178
E + Y R YH H + R AGL G+ + P+ + D YD +
Sbjct: 135 KREVYHYPN-QQRGAILWYHDHAMALTRLNVYAGLVGAYIIHDPKEKRLKLPSDEYDVPL 193
Query: 179 ILNDWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRFNCSSLNSPSLNVGIICNET-- 236
++ D + + E SL SL +PS+ V C ET
Sbjct: 194 LITD------------------RTINEDGSLFYPSAPENPSPSLPNPSI-VPAFCGETIL 234
Query: 237 -NPECSPYVITVIPGKTYRLRISSLTALSALSFQIE-GHNMTVVEADGHNVEPFVVQNLF 294
N + PY + V P K YR R+ + + + ++ G + + +DG + V N F
Sbjct: 235 VNGKVWPY-LEVEPRK-YRFRVINASNTRTYNLSLDNGGDFIQIGSDGGLLPRSVKLNSF 292
Query: 295 -IYSGETYSVLI 305
+ E Y ++I
Sbjct: 293 SLAPAERYDIII 304
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 18/92 (19%)
Query: 479 SLSNKTSETHPWHLHGHDFWVLGYGEGKFDI--YNDPKKYNLVNPIM---------KNTV 527
S+ N T THP HLH F VL FDI Y + + + P + K+T+
Sbjct: 410 SIINPTRGTHPIHLHLVSFRVL--DRRPFDIARYQESGELSYTGPAVPPPPSEKGWKDTI 467
Query: 528 PVHRYGWTALRFRAD---NPGAWAFHCHIESH 556
H LR A G + +HCHI H
Sbjct: 468 QAH--AGEVLRIAATFGPYSGRYVWHCHILEH 497
>pdb|4A68|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase
Trinuclear Site: D116n Mutant
Length = 513
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 34 IVPMAEARIRRYKWEVKYEYKSPDCFRKVVIT----INGRTPGPTIQARQNDTVIVELKN 89
+ P+ +++ + Y +EV E + R + T NG PGPTI+ ++N+ V V+ N
Sbjct: 16 LKPVQQSKEKTY-YEVTMEECTHQLHRDLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMN 74
Query: 90 SL 91
+L
Sbjct: 75 NL 76
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 18/92 (19%)
Query: 479 SLSNKTSETHPWHLHGHDFWVLGYGEGKFDI--YNDPKKYNLVNPIM---------KNTV 527
S+ N T THP HLH F VL FDI Y + + + P + K+T+
Sbjct: 410 SIINPTRGTHPIHLHLVSFRVL--DRRPFDIARYQESGELSYTGPAVPPPPSEKGWKDTI 467
Query: 528 PVHRYGWTALRFRAD---NPGAWAFHCHIESH 556
H LR A G + +HCHI H
Sbjct: 468 QAH--AGEVLRIAATFGPYSGRYVWHCHILEH 497
>pdb|1GSK|A Chain A, Crystal Structure Of Cota, An Endospore Coat Protein
From Bacillus Subtilis
pdb|1OF0|A Chain A, Crystal Structure Of Bacillus Subtilis Cota After 1h
Soaking With Ebs
pdb|1W6L|A Chain A, 3d Structure Of Cota Incubated With Cucl2
pdb|1W6W|A Chain A, 3d Structure Of Cota Incubated With Sodium Azide
pdb|1W8E|A Chain A, 3d Structure Of Cota Incubated With Hydrogen Peroxide
pdb|2BHF|A Chain A, 3d Structure Of The Reduced Form Of Cota
pdb|2X88|A Chain A, Crystal Structure Of Holocota
pdb|3ZDW|A Chain A, Substrate And Dioxygen Binding To The Endospore Coat
Laccase Cota From Bacillus Subtilis
Length = 513
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 34 IVPMAEARIRRYKWEVKYEYKSPDCFRKVVIT----INGRTPGPTIQARQNDTVIVELKN 89
+ P+ +++ + Y +EV E + R + T NG PGPTI+ ++N+ V V+ N
Sbjct: 16 LKPVQQSKEKTY-YEVTMEECTHQLHRDLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMN 74
Query: 90 SL 91
+L
Sbjct: 75 NL 76
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 18/92 (19%)
Query: 479 SLSNKTSETHPWHLHGHDFWVLGYGEGKFDI--YNDPKKYNLVNPIM---------KNTV 527
S+ N T THP HLH F VL FDI Y + + + P + K+T+
Sbjct: 410 SIINPTRGTHPIHLHLVSFRVL--DRRPFDIARYQESGELSYTGPAVPPPPSEKGWKDTI 467
Query: 528 PVHRYGWTALRFRAD---NPGAWAFHCHIESH 556
H LR A G + +HCHI H
Sbjct: 468 QAH--AGEVLRIAATFGPYSGRYVWHCHILEH 497
>pdb|4AKQ|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase
Trinuclear Site: E498d Mutant
Length = 513
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 34 IVPMAEARIRRYKWEVKYEYKSPDCFRKVVIT----INGRTPGPTIQARQNDTVIVELKN 89
+ P+ +++ + Y +EV E + R + T NG PGPTI+ ++N+ V V+ N
Sbjct: 16 LKPVQQSKEKTY-YEVTMEECTHQLHRDLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMN 74
Query: 90 SL 91
+L
Sbjct: 75 NL 76
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 18/92 (19%)
Query: 479 SLSNKTSETHPWHLHGHDFWVLGYGEGKFDI--YNDPKKYNLVNPIM---------KNTV 527
S+ N T THP HLH F VL FDI Y + + + P + K+T+
Sbjct: 410 SIINPTRGTHPIHLHLVSFRVL--DRRPFDIARYQESGELSYTGPAVPPPPSEKGWKDTI 467
Query: 528 PVHRYGWTALRFRAD---NPGAWAFHCHIESH 556
H LR A G + +HCHI H
Sbjct: 468 QAH--AGEVLRIAATFGPYSGRYVWHCHILEH 497
>pdb|3ABG|A Chain A, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|3ABG|B Chain B, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|2XLL|A Chain A, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|B Chain B, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|C Chain C, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|D Chain D, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
Length = 534
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 21/127 (16%)
Query: 56 PDCFRKVVITINGRTPGPTIQA-RQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGT 114
PD ++ +G +PGPT Q R +TV+ + N+ +V +H R WA
Sbjct: 52 PDLGSADLVGYDGMSPGPTFQVPRGVETVVRFINNAEAPNSVHLHGSFSRAAFDGWA--- 108
Query: 115 EGVTQCPILPGETFTYKFVVDRPGTYLYHAHYGM--------QREAGLY-----GSIRVS 161
E +T+ PG Y + + L++ + M + +AGLY ++
Sbjct: 109 EDITE----PGSFKDYYYPNRQSARTLWYHDHAMHITAENAYRGQAGLYMLTDPAEDALN 164
Query: 162 LPEGESE 168
LP G E
Sbjct: 165 LPSGYGE 171
>pdb|2J2M|A Chain A, Crystal Structure Analysis Of Catalase From
Exiguobacterium Oxidotolerans
pdb|2J2M|B Chain B, Crystal Structure Analysis Of Catalase From
Exiguobacterium Oxidotolerans
pdb|2J2M|C Chain C, Crystal Structure Analysis Of Catalase From
Exiguobacterium Oxidotolerans
pdb|2J2M|D Chain D, Crystal Structure Analysis Of Catalase From
Exiguobacterium Oxidotolerans
Length = 491
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 293 LFIYSG-ETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNYYPN----HPKRS 347
LF YS + + + Q P +A N R+ + +NY PN PK++
Sbjct: 336 LFSYSDTQRHRIGPNYQQLPINCPFAQVNNYQRDGAMPFKQQTSSVNYEPNRYQDEPKQT 395
Query: 348 PPTTPPSGPLWNDVGSRL 365
P T + PL +D+ RL
Sbjct: 396 PEYTEDTQPLHDDIHGRL 413
>pdb|1MZZ|A Chain A, Crystal Structure Of Mutant (M182t)of Nitrite Reductase
pdb|1MZZ|B Chain B, Crystal Structure Of Mutant (M182t)of Nitrite Reductase
pdb|1MZZ|C Chain C, Crystal Structure Of Mutant (M182t)of Nitrite Reductase
Length = 334
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 56/147 (38%), Gaps = 25/147 (17%)
Query: 39 EARIRRYKWEVKYEYKSPDCFRKVVITINGRTPGPTIQARQNDTVIVELKN---SLLTEN 95
E +R + EV+ + D + + +T +G PGP + + D V + L N + + N
Sbjct: 34 EFEMRIIEKEVQLD---EDAYLQA-MTFDGSIPGPLMIVHEGDYVELTLINPPENTMPHN 89
Query: 96 VAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAHYG-----MQR 150
+ H G I PGE +F R G ++YH G
Sbjct: 90 IDFHAATGALGGG---------GLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHV 140
Query: 151 EAGLYGSI----RVSLPEGESEPYAYD 173
+G G I R L + E +P YD
Sbjct: 141 VSGTAGCIMVLPRDGLKDHEGKPVRYD 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,214,106
Number of Sequences: 62578
Number of extensions: 851336
Number of successful extensions: 2350
Number of sequences better than 100.0: 120
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1947
Number of HSP's gapped (non-prelim): 273
length of query: 586
length of database: 14,973,337
effective HSP length: 104
effective length of query: 482
effective length of database: 8,465,225
effective search space: 4080238450
effective search space used: 4080238450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)