Query 007890
Match_columns 586
No_of_seqs 240 out of 1929
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 16:42:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007890.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007890hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02604 oxidoreductase 100.0 3E-107 7E-112 887.3 63.7 549 35-586 17-565 (566)
2 TIGR03388 ascorbase L-ascorbat 100.0 4E-106 9E-111 876.5 59.7 538 42-584 1-540 (541)
3 PLN02191 L-ascorbate oxidase 100.0 2E-105 4E-110 871.2 59.9 543 39-585 20-564 (574)
4 PLN00044 multi-copper oxidase- 100.0 2E-104 4E-109 856.2 58.1 518 30-586 15-558 (596)
5 PLN02835 oxidoreductase 100.0 5E-104 1E-108 852.9 59.1 495 38-586 25-535 (539)
6 PLN02991 oxidoreductase 100.0 5E-104 1E-108 848.0 58.4 493 38-585 24-533 (543)
7 PLN02354 copper ion binding / 100.0 1E-103 3E-108 850.3 58.2 517 21-586 6-542 (552)
8 PLN02792 oxidoreductase 100.0 3E-103 6E-108 844.0 56.1 499 38-586 12-527 (536)
9 PLN02168 copper ion binding / 100.0 5E-102 1E-106 834.6 57.5 496 38-584 22-543 (545)
10 TIGR03389 laccase laccase, pla 100.0 2E-101 3E-106 841.2 57.7 515 40-582 1-539 (539)
11 TIGR03390 ascorbOXfungal L-asc 100.0 4.3E-95 9E-100 787.6 53.8 494 43-569 9-533 (538)
12 KOG1263 Multicopper oxidases [ 100.0 8.4E-95 1.8E-99 771.8 55.0 513 35-585 21-558 (563)
13 TIGR01480 copper_res_A copper- 100.0 3.2E-82 6.9E-87 685.5 50.3 422 42-567 45-586 (587)
14 PRK10965 multicopper oxidase; 100.0 3.5E-76 7.5E-81 634.3 45.3 414 42-567 45-522 (523)
15 PRK10883 FtsI repressor; Provi 100.0 1.9E-74 4.1E-79 615.9 42.2 400 44-569 47-469 (471)
16 COG2132 SufI Putative multicop 100.0 8.4E-61 1.8E-65 513.7 42.8 403 56-569 47-450 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 2.7E-48 5.9E-53 393.7 23.5 269 37-343 22-299 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 6.3E-36 1.4E-40 259.1 10.7 115 48-163 1-116 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 5.2E-30 1.1E-34 231.3 11.2 108 456-570 30-137 (138)
20 PF00394 Cu-oxidase: Multicopp 100.0 1.3E-27 2.8E-32 220.3 14.6 154 174-341 1-158 (159)
21 TIGR03095 rusti_cyanin rusticy 99.8 1.1E-18 2.5E-23 156.8 11.9 105 56-161 36-148 (148)
22 TIGR02376 Cu_nitrite_red nitri 99.7 1.2E-14 2.6E-19 147.9 24.1 234 243-567 59-295 (311)
23 TIGR01480 copper_res_A copper- 99.7 3.1E-16 6.6E-21 171.2 11.3 101 59-161 483-587 (587)
24 TIGR03096 nitroso_cyanin nitro 99.4 1.1E-12 2.5E-17 113.8 11.1 95 35-145 17-119 (135)
25 PRK10965 multicopper oxidase; 99.1 6.6E-09 1.4E-13 113.1 23.7 236 61-324 212-511 (523)
26 PLN02835 oxidoreductase 99.0 5.3E-08 1.2E-12 106.4 23.7 255 61-323 191-499 (539)
27 TIGR03389 laccase laccase, pla 99.0 2.9E-08 6.3E-13 109.2 21.4 229 243-553 34-264 (539)
28 PLN02604 oxidoreductase 99.0 4.5E-09 9.9E-14 115.9 13.0 88 462-569 57-144 (566)
29 PRK10883 FtsI repressor; Provi 99.0 2.3E-08 4.9E-13 107.8 17.8 222 60-324 208-456 (471)
30 PF07731 Cu-oxidase_2: Multico 98.9 1.2E-09 2.5E-14 98.4 6.3 90 72-162 33-136 (138)
31 PRK02710 plastocyanin; Provisi 98.9 3.2E-08 7E-13 86.2 11.7 76 70-161 44-119 (119)
32 COG2132 SufI Putative multicop 98.8 1.4E-07 3E-12 102.0 18.1 233 59-323 187-436 (451)
33 PLN02354 copper ion binding / 98.8 5.8E-07 1.3E-11 98.5 20.4 224 243-552 58-283 (552)
34 TIGR03390 ascorbOXfungal L-asc 98.8 4.4E-07 9.5E-12 99.7 19.4 233 243-551 39-281 (538)
35 TIGR03388 ascorbase L-ascorbat 98.7 7E-07 1.5E-11 98.3 18.9 245 74-324 204-512 (541)
36 PLN02792 oxidoreductase 98.7 1.1E-06 2.4E-11 95.9 19.7 219 243-551 47-268 (536)
37 PLN02168 copper ion binding / 98.7 1.3E-06 2.8E-11 95.5 19.8 210 243-543 57-267 (545)
38 PLN02991 oxidoreductase 98.6 1.1E-05 2.4E-10 88.1 24.7 254 61-322 190-497 (543)
39 PF07732 Cu-oxidase_3: Multico 98.6 1E-07 2.2E-12 82.7 7.0 89 461-570 27-116 (117)
40 PLN02191 L-ascorbate oxidase 98.6 1.6E-06 3.5E-11 95.7 16.8 244 243-551 54-302 (574)
41 PF13473 Cupredoxin_1: Cupredo 98.5 1.6E-07 3.6E-12 79.9 6.5 74 69-160 31-104 (104)
42 TIGR02656 cyanin_plasto plasto 98.4 7.2E-07 1.6E-11 75.1 8.0 84 70-161 14-99 (99)
43 PLN00044 multi-copper oxidase- 98.4 7.4E-06 1.6E-10 90.1 18.0 228 243-548 60-291 (596)
44 PF00127 Copper-bind: Copper b 98.2 3E-06 6.6E-11 71.3 6.8 80 70-161 14-99 (99)
45 KOG1263 Multicopper oxidases [ 98.1 0.00066 1.4E-08 74.2 22.9 81 243-325 430-525 (563)
46 PF00394 Cu-oxidase: Multicopp 98.1 1E-05 2.2E-10 74.5 7.5 89 461-566 61-154 (159)
47 TIGR02657 amicyanin amicyanin. 98.0 3E-05 6.6E-10 62.9 7.9 76 70-161 8-83 (83)
48 TIGR03095 rusti_cyanin rusticy 98.0 3.3E-05 7.2E-10 69.7 8.3 90 461-567 53-147 (148)
49 TIGR03094 sulfo_cyanin sulfocy 98.0 0.00017 3.6E-09 65.3 12.6 98 63-164 74-188 (195)
50 PRK02888 nitrous-oxide reducta 97.9 4.9E-05 1.1E-09 82.5 10.3 96 55-163 535-635 (635)
51 COG3794 PetE Plastocyanin [Ene 97.8 0.00021 4.6E-09 62.1 10.4 76 72-162 53-128 (128)
52 PF06525 SoxE: Sulfocyanin (So 97.8 0.00021 4.6E-09 66.1 10.3 101 63-164 75-189 (196)
53 TIGR02375 pseudoazurin pseudoa 97.6 0.00036 7.8E-09 60.1 8.3 78 70-164 12-90 (116)
54 TIGR03096 nitroso_cyanin nitro 97.5 0.00047 1E-08 60.4 8.0 58 462-553 63-120 (135)
55 TIGR02656 cyanin_plasto plasto 97.5 0.00042 9.2E-09 58.2 7.3 80 462-567 19-98 (99)
56 TIGR03102 halo_cynanin halocya 97.4 0.0008 1.7E-08 57.8 8.8 77 70-161 39-115 (115)
57 PF13473 Cupredoxin_1: Cupredo 96.8 0.0051 1.1E-07 52.1 7.4 67 461-562 36-102 (104)
58 PF00127 Copper-bind: Copper b 96.3 0.016 3.5E-07 48.6 7.5 80 462-567 19-98 (99)
59 PRK02888 nitrous-oxide reducta 95.9 0.027 5.8E-07 61.8 8.7 78 461-569 556-634 (635)
60 PF00116 COX2: Cytochrome C ox 95.9 0.058 1.3E-06 46.9 8.9 74 72-160 45-119 (120)
61 PRK02710 plastocyanin; Provisi 95.7 0.045 9.8E-07 47.6 7.6 70 462-567 49-118 (119)
62 COG4454 Uncharacterized copper 95.3 0.3 6.5E-06 43.6 11.4 89 69-162 59-158 (158)
63 COG4454 Uncharacterized copper 95.0 0.083 1.8E-06 47.1 6.9 94 462-569 65-158 (158)
64 PRK10378 inactive ferrous ion 94.5 0.43 9.4E-06 49.6 11.9 79 69-164 40-119 (375)
65 TIGR02866 CoxB cytochrome c ox 94.2 0.33 7.2E-06 46.4 9.7 78 72-164 116-194 (201)
66 TIGR02375 pseudoazurin pseudoa 92.5 0.69 1.5E-05 39.9 7.9 35 531-569 54-88 (116)
67 PF06525 SoxE: Sulfocyanin (So 92.3 1.3 2.8E-05 41.5 9.8 98 459-569 85-187 (196)
68 TIGR02695 azurin azurin. Azuri 91.4 0.99 2.1E-05 39.0 7.4 88 70-159 13-124 (125)
69 PF12690 BsuPI: Intracellular 91.2 0.89 1.9E-05 36.6 6.7 31 289-319 50-82 (82)
70 COG1622 CyoA Heme/copper-type 91.0 0.81 1.7E-05 45.0 7.6 79 72-165 136-215 (247)
71 TIGR03094 sulfo_cyanin sulfocy 91.0 4.7 0.0001 37.1 11.7 96 461-569 86-186 (195)
72 TIGR02657 amicyanin amicyanin. 90.9 1.1 2.4E-05 36.1 7.1 70 462-567 13-82 (83)
73 TIGR03102 halo_cynanin halocya 89.0 2.4 5.2E-05 36.5 8.0 72 462-568 44-115 (115)
74 PF00116 COX2: Cytochrome C ox 87.0 5.1 0.00011 34.8 8.9 65 461-560 47-111 (120)
75 TIGR02866 CoxB cytochrome c ox 84.0 5.3 0.00012 38.1 8.4 69 462-567 119-190 (201)
76 COG3794 PetE Plastocyanin [Ene 81.6 6.8 0.00015 34.3 7.2 72 462-568 56-127 (128)
77 PF07705 CARDB: CARDB; InterP 75.8 31 0.00067 28.0 9.6 70 246-324 14-86 (101)
78 PF12690 BsuPI: Intracellular 75.2 11 0.00024 30.3 6.2 57 74-142 17-80 (82)
79 COG4263 NosZ Nitrous oxide red 74.3 3.8 8.3E-05 43.0 4.1 78 73-161 558-636 (637)
80 MTH00140 COX2 cytochrome c oxi 72.9 61 0.0013 31.6 12.0 78 72-164 139-217 (228)
81 TIGR03079 CH4_NH3mon_ox_B meth 66.3 80 0.0017 32.6 11.3 58 69-135 278-353 (399)
82 PF10633 NPCBM_assoc: NPCBM-as 62.7 70 0.0015 25.0 8.5 66 247-321 1-75 (78)
83 MTH00047 COX2 cytochrome c oxi 62.1 1.4E+02 0.0031 28.2 13.4 77 73-164 116-193 (194)
84 COG1622 CyoA Heme/copper-type 62.0 27 0.0006 34.4 7.1 67 462-563 139-205 (247)
85 TIGR01433 CyoA cytochrome o ub 60.6 18 0.0004 35.1 5.6 70 462-566 141-211 (226)
86 PF01835 A2M_N: MG2 domain; I 60.0 27 0.00059 28.7 5.9 70 247-322 11-86 (99)
87 PF10633 NPCBM_assoc: NPCBM-as 59.9 15 0.00032 28.9 4.1 61 78-141 2-70 (78)
88 PF04151 PPC: Bacterial pre-pe 59.8 46 0.001 25.4 6.8 65 243-320 5-69 (70)
89 PF05506 DUF756: Domain of unk 59.4 43 0.00094 27.1 6.9 56 71-134 7-65 (89)
90 COG2967 ApaG Uncharacterized p 58.6 12 0.00026 31.9 3.3 54 84-139 33-95 (126)
91 PF14344 DUF4397: Domain of un 54.0 1.4E+02 0.003 25.5 11.2 22 288-309 62-83 (122)
92 PRK10378 inactive ferrous ion 53.8 37 0.0008 35.6 6.8 66 239-321 40-105 (375)
93 PF14874 PapD-like: Flagellar- 53.6 77 0.0017 26.1 7.7 62 246-318 15-83 (102)
94 PF05938 Self-incomp_S1: Plant 49.1 1.2E+02 0.0026 25.5 8.3 69 84-163 2-71 (110)
95 COG1470 Predicted membrane pro 47.9 1E+02 0.0022 33.0 8.8 76 242-324 388-470 (513)
96 TIGR01432 QOXA cytochrome aa3 46.3 57 0.0012 31.5 6.5 59 462-555 132-190 (217)
97 TIGR01432 QOXA cytochrome aa3 45.5 2.2E+02 0.0047 27.4 10.4 76 73-163 130-206 (217)
98 KOG4063 Major epididymal secre 41.7 2E+02 0.0044 25.9 8.4 61 74-134 49-122 (158)
99 MTH00051 COX2 cytochrome c oxi 41.1 3.5E+02 0.0076 26.4 11.1 76 73-163 144-220 (234)
100 PTZ00047 cytochrome c oxidase 41.0 1.4E+02 0.0031 27.2 7.7 70 462-566 75-145 (162)
101 PF07691 PA14: PA14 domain; I 40.5 2.5E+02 0.0053 24.4 10.1 61 244-309 53-120 (145)
102 smart00758 PA14 domain in bact 39.1 2.4E+02 0.0052 24.3 9.0 60 245-309 52-112 (136)
103 MTH00140 COX2 cytochrome c oxi 38.9 1.3E+02 0.0027 29.4 7.6 71 461-566 141-212 (228)
104 PTZ00047 cytochrome c oxidase 38.0 1.5E+02 0.0032 27.1 7.3 75 74-163 74-149 (162)
105 MTH00139 COX2 cytochrome c oxi 36.1 1E+02 0.0022 30.0 6.5 68 461-563 141-208 (226)
106 MTH00047 COX2 cytochrome c oxi 35.7 1.3E+02 0.0029 28.4 6.9 61 462-557 118-178 (194)
107 PF04379 DUF525: Protein of un 35.5 70 0.0015 26.2 4.4 50 252-304 15-68 (90)
108 MTH00008 COX2 cytochrome c oxi 35.1 1.3E+02 0.0028 29.3 7.0 76 73-163 140-216 (228)
109 PF14481 Fimbrial_PilY2: Type 34.8 19 0.00042 29.9 1.0 15 72-86 64-79 (118)
110 PRK05461 apaG CO2+/MG2+ efflux 34.7 72 0.0016 28.0 4.6 50 252-304 32-85 (127)
111 PF14392 zf-CCHC_4: Zinc knuck 34.6 60 0.0013 23.1 3.4 42 518-559 3-45 (49)
112 PF11142 DUF2917: Protein of u 34.2 91 0.002 23.6 4.5 47 245-303 2-48 (63)
113 MTH00038 COX2 cytochrome c oxi 33.9 1.4E+02 0.003 29.2 7.0 70 461-565 141-210 (229)
114 PF04744 Monooxygenase_B: Mono 33.6 2.8E+02 0.0061 28.9 9.2 60 69-135 259-334 (381)
115 TIGR02695 azurin azurin. Azuri 33.5 3.3E+02 0.0071 23.8 8.8 93 462-565 18-123 (125)
116 COG4263 NosZ Nitrous oxide red 33.2 75 0.0016 33.8 5.1 61 74-145 549-609 (637)
117 PF02102 Peptidase_M35: Deuter 32.3 15 0.00033 38.2 0.0 45 96-144 78-122 (359)
118 MTH00098 COX2 cytochrome c oxi 32.2 1.6E+02 0.0035 28.6 7.2 68 461-563 141-208 (227)
119 PF04744 Monooxygenase_B: Mono 32.1 38 0.00083 35.0 2.8 45 119-163 80-129 (381)
120 PRK13254 cytochrome c-type bio 32.1 1.1E+02 0.0024 27.6 5.5 70 40-115 31-101 (148)
121 PRK10525 cytochrome o ubiquino 30.6 1.1E+02 0.0024 31.3 5.9 59 462-555 153-211 (315)
122 MTH00129 COX2 cytochrome c oxi 30.5 5.2E+02 0.011 25.2 11.5 76 73-163 140-216 (230)
123 COG1188 Ribosome-associated he 30.0 44 0.00096 27.8 2.4 29 63-91 35-63 (100)
124 PF15415 DUF4622: Protein of u 29.9 2.9E+02 0.0063 26.9 8.0 64 244-309 95-176 (310)
125 PF03443 Glyco_hydro_61: Glyco 29.2 1.2E+02 0.0025 29.4 5.5 93 231-324 49-160 (218)
126 MTH00154 COX2 cytochrome c oxi 28.7 1.7E+02 0.0036 28.5 6.6 66 462-562 142-207 (227)
127 MTH00129 COX2 cytochrome c oxi 28.5 1.8E+02 0.004 28.3 6.9 62 461-557 141-202 (230)
128 PRK09838 periplasmic copper-bi 27.7 3.8E+02 0.0081 23.0 7.8 23 76-99 88-110 (115)
129 TIGR01433 CyoA cytochrome o ub 27.2 1.7E+02 0.0038 28.4 6.4 76 73-164 139-216 (226)
130 PF09394 Inhibitor_I42: Chagas 27.0 2E+02 0.0044 23.0 6.0 62 75-140 1-67 (92)
131 COG3354 FlaG Putative archaeal 26.9 4E+02 0.0086 23.8 7.7 63 251-319 70-140 (154)
132 PF11614 FixG_C: IG-like fold 26.2 1.9E+02 0.004 24.6 5.8 48 252-308 34-83 (118)
133 PF10989 DUF2808: Protein of u 24.4 1.5E+02 0.0033 26.5 5.1 26 120-145 97-126 (146)
134 MTH00080 COX2 cytochrome c oxi 24.4 2.1E+02 0.0046 27.9 6.4 70 462-566 145-215 (231)
135 MTH00023 COX2 cytochrome c oxi 24.3 6.8E+02 0.015 24.5 11.0 76 73-163 151-227 (240)
136 MTH00008 COX2 cytochrome c oxi 24.0 3.4E+02 0.0074 26.4 7.8 68 461-563 141-208 (228)
137 cd00918 Der-p2_like Several gr 23.8 4E+02 0.0087 23.0 7.4 68 65-134 13-87 (120)
138 cd00916 Npc2_like Niemann-Pick 23.3 4.1E+02 0.0089 22.9 7.4 61 73-134 22-91 (123)
139 MTH00185 COX2 cytochrome c oxi 23.2 7E+02 0.015 24.2 11.7 125 20-165 70-218 (230)
140 COG3218 ABC-type uncharacteriz 23.1 1.8E+02 0.0039 27.5 5.3 69 16-90 8-79 (205)
141 MTH00168 COX2 cytochrome c oxi 23.1 2E+02 0.0044 27.9 6.0 62 461-557 141-202 (225)
142 PRK13159 cytochrome c-type bio 22.4 2.3E+02 0.005 25.7 5.7 73 38-115 29-102 (155)
143 TIGR03396 PC_PLC phospholipase 22.3 4.2E+02 0.0091 30.4 9.0 64 71-143 592-658 (690)
144 PF10989 DUF2808: Protein of u 22.3 95 0.0021 27.8 3.3 25 529-553 99-127 (146)
145 MTH00117 COX2 cytochrome c oxi 21.8 4.3E+02 0.0094 25.6 8.0 68 461-563 141-208 (227)
146 MTH00023 COX2 cytochrome c oxi 21.7 3.8E+02 0.0083 26.3 7.7 69 461-564 152-220 (240)
147 PRK09918 putative fimbrial cha 21.6 2.4E+02 0.0052 27.4 6.3 62 242-308 75-136 (230)
148 MTH00098 COX2 cytochrome c oxi 21.3 3.1E+02 0.0068 26.6 6.9 76 73-163 140-216 (227)
149 PRK13202 ureB urease subunit b 20.5 3.1E+02 0.0068 23.0 5.6 64 244-308 12-85 (104)
150 PRK07440 hypothetical protein; 20.4 90 0.002 24.1 2.4 27 60-86 34-64 (70)
151 MTH00154 COX2 cytochrome c oxi 20.3 7.9E+02 0.017 23.8 11.3 76 73-163 140-216 (227)
152 PRK05659 sulfur carrier protei 20.1 1E+02 0.0022 23.2 2.6 26 61-86 31-60 (66)
153 MTH00027 COX2 cytochrome c oxi 20.0 2.7E+02 0.0058 27.8 6.2 71 461-566 175-246 (262)
No 1
>PLN02604 oxidoreductase
Probab=100.00 E-value=3.3e-107 Score=887.33 Aligned_cols=549 Identities=81% Similarity=1.395 Sum_probs=431.1
Q ss_pred ccccccceEEEEEEEEEEeeCCCCceeEEEEECCCCCCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCC
Q 007890 35 VPMAEARIRRYKWEVKYEYKSPDCFRKVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGT 114 (586)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~~~dg~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv 114 (586)
+..+.+++++|+|+|++..++|||+.|.+|+|||++|||+|++++||+|+|+|+|+|..++++|||||+++.+++|+||+
T Consensus 17 ~~~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~ 96 (566)
T PLN02604 17 FPAAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGT 96 (566)
T ss_pred hhhccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCC
Confidence 44566889999999999999999999999999999999999999999999999999657899999999999999999999
Q ss_pred CccccccCCCCCeEEEEEEcCCCcceeeeccccccccCcceEEEEEECCCCCCCCCcccccceEEEEecccCCHHHHHhc
Q 007890 115 EGVTQCPILPGETFTYKFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPEGESEPYAYDYDRSIILNDWFHRSAFEQAAG 194 (586)
Q Consensus 115 ~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~d~e~~l~l~d~~~~~~~~~~~~ 194 (586)
++++||+|+||++++|+|+++++||||||||...|+.+||+|+|||++++++..|+.||+|.+|+|+||+++...+....
T Consensus 97 ~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~d~d~~l~l~Dw~~~~~~~~~~~ 176 (566)
T PLN02604 97 EGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPFSYDYDRSIILTDWYHKSTYEQALG 176 (566)
T ss_pred CccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCccccCcceEEEeeccccCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999987666788889999999999999988766554
Q ss_pred ccCCCCCCCCCCcceeecCCCCCCCCCCCCCCCccceeecCCCCCCCceEEEEeCCcEEEEEEeecCCcceEEEEeCCCe
Q 007890 195 LSSIPFQWVGEPQSLLIQGKGRFNCSSLNSPSLNVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHN 274 (586)
Q Consensus 195 ~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~ 274 (586)
.......+..+++++||||++..+|...... ......|..++..+.+++++|++|++|||||||+|....+.|+|+||+
T Consensus 177 ~~~~~~~~~~~~d~~liNG~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~ 255 (566)
T PLN02604 177 LSSIPFDWVGEPQSLLIQGKGRYNCSLVSSP-YLKAGVCNATNPECSPYVLTVVPGKTYRLRISSLTALSALSFQIEGHN 255 (566)
T ss_pred hccCCCccCCCCCceEEcCCCCCCCccccCc-cccccccccCCCCCCceEEEecCCCEEEEEEEeccccceEEEEECCCE
Confidence 4432222235789999999999988641110 111224665555566778999999999999999999999999999999
Q ss_pred eEEEecCCccccceEEeEEEEccCceEEEEEEeCCCCCCceEEEEEeecCCCCCCCCCeEEEEEecCCCCCCCCCCCCCC
Q 007890 275 MTVVEADGHNVEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNYYPNHPKRSPPTTPPS 354 (586)
Q Consensus 275 ~~via~DG~~~~P~~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~ 354 (586)
|+|||+||.+++|++++.|.|++||||||+|++++.++++||||+.....+. ....++|||+|++......++...+.
T Consensus 256 ~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~--~~~~~~aIL~Y~~~~~~~~~~~~~~~ 333 (566)
T PLN02604 256 MTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNN--TTPPGLAIFNYYPNHPRRSPPTVPPS 333 (566)
T ss_pred EEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCC--CCcceeEEEEECCCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999844468999987655443 34678999999854322122222222
Q ss_pred CCCcCCccccccccccccccCCCCCCCCCCCceEEEEEeeeecCCCeEEEEEcCccccCCCCchHHHhhhccccCCCCCC
Q 007890 355 GPLWNDVGSRLNQSLAIKARKGFIIPPPQSADRMIVMLNTQNNVSGNVRWSVNKVTYTLPHIPYLIALKENITSAFDQTP 434 (586)
Q Consensus 355 ~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~iNg~~~~~p~~p~l~~~~~~~~~~f~~~~ 434 (586)
.+.+++..........+.........++...++++.+....+..++...|.||+.+|..|+.|.|.+......+.|+.+.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~ 413 (566)
T PLN02604 334 GPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLNTQNEVNGYRRWSVNNVSFNLPHTPYLIALKENLTGAFDQTP 413 (566)
T ss_pred CCcccccchhhcchhcccccccCcCCCCCCCCeEEEEeccccccCCeEEEEECcccCCCCCCchhHhhhhcCCCcccCCC
Confidence 23343322111111111111111112334556777654433333456789999999999999999888776666665443
Q ss_pred CCCCCCccccccccCcCCccccccceEEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCC
Q 007890 435 PPDGYDFKNYDIFSVAENKSYTIRNGVYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPK 514 (586)
Q Consensus 435 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~ 514 (586)
+|..+.+..++......+.+...++.++.++.|++||++|+|.+.+.+.....||||||||+||||++|.|.|+...+..
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~ 493 (566)
T PLN02604 414 PPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPK 493 (566)
T ss_pred CCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccCCCCCCCCEEecCCceEEEEecCCCCCcccccc
Confidence 33211111111111111112334566799999999999999975431122348999999999999999999998765567
Q ss_pred CCCCCCCCcceeEEeCCCCEEEEEEEeCCceeeEEeecchhhhhcCceEEEecccccccCCCCCcccCCCCC
Q 007890 515 KYNLVNPIMKNTVPVHRYGWTALRFRADNPGAWAFHCHIESHFYMGMGVVFAEGIERLGELPSSIKGCVHRK 586 (586)
Q Consensus 515 ~~n~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~~~~~~~~~~P~~~~~C~~~~ 586 (586)
.+|+.+|++|||+.||++||++|||++||||.|+|||||+||+..||+++|.|++++++++|..+++|+..|
T Consensus 494 ~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~~~~~~~~p~~~~~C~~~~ 565 (566)
T PLN02604 494 KYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEGIERVGKLPSSIMGCGESK 565 (566)
T ss_pred ccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCCEEEEeeChhhccCCCCCcCccccCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999765
No 2
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=4.1e-106 Score=876.54 Aligned_cols=538 Identities=62% Similarity=1.132 Sum_probs=424.8
Q ss_pred eEEEEEEEEEEeeCCCCceeEEEEECCCCCCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCcccccc
Q 007890 42 IRRYKWEVKYEYKSPDCFRKVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCP 121 (586)
Q Consensus 42 ~~~~~l~~~~~~~~~dg~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~ 121 (586)
+|+|+|++++..++|||+.|.+++|||++|||+|++++||+|+|+|+|+|.+++++|||||+++.+++|+||+++++||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 47899999999999999999999999999999999999999999999996678999999999999999999999999999
Q ss_pred CCCCCeEEEEEEcCCCcceeeeccccccccCcceEEEEEECCCCCCCCCcccccceEEEEecccCCHHHHHhcccCCCCC
Q 007890 122 ILPGETFTYKFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPEGESEPYAYDYDRSIILNDWFHRSAFEQAAGLSSIPFQ 201 (586)
Q Consensus 122 i~pG~~~~Y~f~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~d~e~~l~l~d~~~~~~~~~~~~~~~~~~~ 201 (586)
|+||++|+|+|+++++||||||||.+.|+.+||+|+|||+++.++..|+.||+|++|+|+||+++...+........+..
T Consensus 81 I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~ 160 (541)
T TIGR03388 81 INPGETFIYNFVVDRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPFHYDGEFNLLLSDWWHKSIHEQEVGLSSKPMR 160 (541)
T ss_pred cCCCCEEEEEEEcCCCEEEEEEecchHHhhccceEEEEEecCCCCCCCccccceEEEEeecccCCCHHHHHhhcccCCCc
Confidence 99999999999999999999999999999999999999999876567788999999999999999876655544433333
Q ss_pred CCCCCcceeecCCCCCCCCCCCCCCCccceeec-CCCCCCCceEEEEeCCcEEEEEEeecCCcceEEEEeCCCeeEEEec
Q 007890 202 WVGEPQSLLIQGKGRFNCSSLNSPSLNVGIICN-ETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEA 280 (586)
Q Consensus 202 ~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~ 280 (586)
+..+++++||||+++.+|.............|. +.+..+.+..++|++|++|||||||+|....+.|+|++|+|+|||+
T Consensus 161 ~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa~ 240 (541)
T TIGR03388 161 WIGEPQSLLINGRGQFNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVEA 240 (541)
T ss_pred CCCCCcceEECCCCCCCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEEEe
Confidence 345789999999999888642110000001122 1234445567999999999999999999999999999999999999
Q ss_pred CCccccceEEeEEEEccCceEEEEEEeCCCCCCceEEEEEeecCCCCCCCCCeEEEEEecCCCCCCCCCCCCCCCCCcCC
Q 007890 281 DGHNVEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNYYPNHPKRSPPTTPPSGPLWND 360 (586)
Q Consensus 281 DG~~~~P~~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~ 360 (586)
||++++|+.++.|.|++||||||+|++++.++++||||+.....+. ....++|||+|.++.....++...+..|.+++
T Consensus 241 DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~~--~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~ 318 (541)
T TIGR03388 241 DGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRKP--NTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDD 318 (541)
T ss_pred CCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCCC--CCccEEEEEEECCCCCCCCCCCCCCCCCCccc
Confidence 9999999999999999999999999998855579999998765432 34568899999865433222222333454544
Q ss_pred ccccccccccccccCCCCCCCCCCCceEEEEEeeeecCCCeEEEEEcCccccCCCCchHHHhhhccccCCCCCCCCCCCC
Q 007890 361 VGSRLNQSLAIKARKGFIIPPPQSADRMIVMLNTQNNVSGNVRWSVNKVTYTLPHIPYLIALKENITSAFDQTPPPDGYD 440 (586)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~iNg~~~~~p~~p~l~~~~~~~~~~f~~~~~p~~~~ 440 (586)
..........+..... ...++...++++.+....+..++..+|.+|+.+|..|+.|.|.+...++.+.|+...++. .
T Consensus 319 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~--~ 395 (541)
T TIGR03388 319 FDRSKAFSLAIKAAMG-SPKPPETSDRRIVLLNTQNKINGYTKWAINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPE--N 395 (541)
T ss_pred cchhhccchhhhcccc-CCCCCCCCCcEEEEeccCcccCceEEEEECcccCCCCCccHHHHHhhcCCccccCCCCcc--c
Confidence 3322222212211111 122344567776654443323455689999999999999999988776666665443332 1
Q ss_pred c-cccccccCcCCccccccceEEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCC
Q 007890 441 F-KNYDIFSVAENKSYTIRNGVYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLV 519 (586)
Q Consensus 441 ~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~ 519 (586)
+ .+|+....+.....+.++.++.++.|++||++|+|.+.+.+.....||||||||+||||++|.|.|+...+...+|+.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~ 475 (541)
T TIGR03388 396 YPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLK 475 (541)
T ss_pred ccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCCcccCcccccCC
Confidence 1 122221222222344567789999999999999997533111234899999999999999999999765555689999
Q ss_pred CCCcceeEEeCCCCEEEEEEEeCCceeeEEeecchhhhhcCceEEEecccccccCCCCCcccCCC
Q 007890 520 NPIMKNTVPVHRYGWTALRFRADNPGAWAFHCHIESHFYMGMGVVFAEGIERLGELPSSIKGCVH 584 (586)
Q Consensus 520 ~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~~~~~~~~~~P~~~~~C~~ 584 (586)
+|++|||+.||++||++|||++||||.|+|||||+||+..||+++|.|++++++++|..+++||.
T Consensus 476 nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~~~~~~~~P~~~~~C~~ 540 (541)
T TIGR03388 476 NPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGVEKVGKLPKEALGCGL 540 (541)
T ss_pred CCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEeccccccCCCCccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999983
No 3
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=1.9e-105 Score=871.18 Aligned_cols=543 Identities=48% Similarity=0.916 Sum_probs=415.6
Q ss_pred ccceEEEEEEEEEEeeCCCCceeEEEEECCCCCCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccc
Q 007890 39 EARIRRYKWEVKYEYKSPDCFRKVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVT 118 (586)
Q Consensus 39 ~~~~~~~~l~~~~~~~~~dg~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~ 118 (586)
.+++++|+|++++..++|||++|++++|||++|||+|++++||+|+|+|+|+|..++|+|||||+++.+++|+||+++++
T Consensus 20 ~~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvt 99 (574)
T PLN02191 20 SAAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVT 99 (574)
T ss_pred ccceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccc
Confidence 46889999999999999999999999999999999999999999999999996568999999999999999999999999
Q ss_pred cccCCCCCeEEEEEEcCCCcceeeeccccccccCcceEEEEEECCCCCCCCCcccccceEEEEecccCCHHHHHhcccCC
Q 007890 119 QCPILPGETFTYKFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPEGESEPYAYDYDRSIILNDWFHRSAFEQAAGLSSI 198 (586)
Q Consensus 119 q~~i~pG~~~~Y~f~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~d~e~~l~l~d~~~~~~~~~~~~~~~~ 198 (586)
||+|+||++|+|+|+++++||||||||.+.|+.+||+|+|||+++.+..+++.||+|++|+|+||+++...+........
T Consensus 100 q~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~ 179 (574)
T PLN02191 100 QCAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERLRYDGEFNLLLSDWWHESIPSQELGLSSK 179 (574)
T ss_pred cCCcCCCCeEEEEEECCCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCCCCCeeEEEeeeccccCChHHHHHhhccC
Confidence 99999999999999999999999999999999999999999997655445677899999999999998754433333322
Q ss_pred CCCCCCCCcceeecCCCCCCCCCCCCCC-Cccceeec-CCCCCCCceEEEEeCCcEEEEEEeecCCcceEEEEeCCCeeE
Q 007890 199 PFQWVGEPQSLLIQGKGRFNCSSLNSPS-LNVGIICN-ETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMT 276 (586)
Q Consensus 199 ~~~~~~~~~~~liNG~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~ 276 (586)
+..+..+++++||||++..+|....... ...+..|. ..+..+.+.+++|++|++|||||||+|+...+.|+|+||+|+
T Consensus 180 ~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~t 259 (574)
T PLN02191 180 PMRWIGEAQSILINGRGQFNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLV 259 (574)
T ss_pred CCCcCCCCCceEECCCCCCCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEE
Confidence 2223457899999999998886321100 00000121 112234455799999999999999999999999999999999
Q ss_pred EEecCCccccceEEeEEEEccCceEEEEEEeCCCCCCceEEEEEeecCCCCCCCCCeEEEEEecCCCCCCCCCCCCCCCC
Q 007890 277 VVEADGHNVEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNYYPNHPKRSPPTTPPSGP 356 (586)
Q Consensus 277 via~DG~~~~P~~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p 356 (586)
|||+||++++|+.+++|.|++||||||+|++++.++++||||+.....+. ......|||+|.+......+....+..|
T Consensus 260 VIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~--~~~~~~ail~Y~~~~~~~~p~~~~~~~p 337 (574)
T PLN02191 260 VVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKP--NTTQALTILNYVTAPASKLPSSPPPVTP 337 (574)
T ss_pred EEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCC--CCCCceEEEEECCCCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999999844568999997755443 2345679999986543322222222334
Q ss_pred CcCCccccccccccccccCCCCCCCCCCCceEEEEEeeeecCCCeEEEEEcCccccCCCCchHHHhhhccccCCCCCCCC
Q 007890 357 LWNDVGSRLNQSLAIKARKGFIIPPPQSADRMIVMLNTQNNVSGNVRWSVNKVTYTLPHIPYLIALKENITSAFDQTPPP 436 (586)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~iNg~~~~~p~~p~l~~~~~~~~~~f~~~~~p 436 (586)
.+++..........+......+..+....++.+.+... ....+..+|.+||++|..|+.|.|.+...+..+.|+...++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~ 416 (574)
T PLN02191 338 RWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNTQ-NLIDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPP 416 (574)
T ss_pred cccccchhhcccccccccccCCCCCCcccceEEEeccc-ceeCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCc
Confidence 44433222212111111111011122223455544322 11234568999999999999999999887666666544433
Q ss_pred CCCCccccccccCcCCccccccceEEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCC
Q 007890 437 DGYDFKNYDIFSVAENKSYTIRNGVYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKY 516 (586)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~ 516 (586)
..+.+ +|+........+...++.++.++.|++|||+|+|.+..++.....||||||||+||||++|.|.|++......+
T Consensus 417 ~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~ 495 (574)
T PLN02191 417 RSYRM-DYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTY 495 (574)
T ss_pred ccccc-cccccCCCccccccccceeEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccc
Confidence 21000 22211111111223456688999999999999997521111223899999999999999999999875445678
Q ss_pred CCCCCCcceeEEeCCCCEEEEEEEeCCceeeEEeecchhhhhcCceEEEecccccccCCCCCcccCCCC
Q 007890 517 NLVNPIMKNTVPVHRYGWTALRFRADNPGAWAFHCHIESHFYMGMGVVFAEGIERLGELPSSIKGCVHR 585 (586)
Q Consensus 517 n~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~~~~~~~~~~P~~~~~C~~~ 585 (586)
|+.||++|||+.||++||++|||++||||.|+|||||+||+..||+++|.|++++++++|..++.|+..
T Consensus 496 nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~e~~~~~~~~p~~~~~C~~~ 564 (574)
T PLN02191 496 NLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFAEGLNRIGKIPDEALGCGLT 564 (574)
T ss_pred cCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEecChhhccCCCcchhhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999853
No 4
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=1.6e-104 Score=856.16 Aligned_cols=518 Identities=28% Similarity=0.488 Sum_probs=404.9
Q ss_pred HhhccccccccceEEEEEEEEEEeeCCCC--ceeEEEEECCCCCCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeecc
Q 007890 30 SLANIVPMAEARIRRYKWEVKYEYKSPDC--FRKVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIG 107 (586)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~~~~~~~~dg--~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~ 107 (586)
+++.+.+.|.+.+++|+|++++..++||| ..+++++|||++|||+|++++||+|+|+|+|+ ++++|+|||||++|++
T Consensus 15 ~~~~~~~~~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~-L~~~ttIHWHGl~q~~ 93 (596)
T PLN00044 15 ALAPAPAGAGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNA-LDEPLLLTWHGVQQRK 93 (596)
T ss_pred hcCCCccccCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeC-CCCCccEEECCccCCC
Confidence 33334445677899999999999999999 55689999999999999999999999999999 6899999999999999
Q ss_pred CCCCCCCCccccccCCCCCeEEEEEEc-CCCcceeeeccccccccCcceEEEEEECCCCCCCCCcc--cccceEEEEecc
Q 007890 108 TPWADGTEGVTQCPILPGETFTYKFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPEGESEPYAY--DYDRSIILNDWF 184 (586)
Q Consensus 108 ~~~~DGv~~~~q~~i~pG~~~~Y~f~~-~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~--d~e~~l~l~d~~ 184 (586)
++|+||+++ +||||+||++|+|+|++ +++||||||||++.|+++||+|+|||++++..+.|+.+ ++|++|+|+||+
T Consensus 94 t~w~DGv~~-TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~ 172 (596)
T PLN00044 94 SAWQDGVGG-TNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWY 172 (596)
T ss_pred CccccCCCC-CcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEecccc
Confidence 999999988 99999999999999999 69999999999999999999999999998765556554 379999999999
Q ss_pred cCCHHHHHhcccCCCCCCCCCCcceeecCCCCC--CCCCCCCCCCccceeecCCCCCCCceEEEEeCCcEEEEEEeecCC
Q 007890 185 HRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRF--NCSSLNSPSLNVGIICNETNPECSPYVITVIPGKTYRLRISSLTA 262 (586)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~ 262 (586)
+++..++.... ..+.. .+.++++||||++.. +|.. .......++++|++|++|||||||++.
T Consensus 173 ~~~~~~~~~~l-~~g~~-~~~~d~~lING~g~~~~n~~~--------------~~~~~~~~~i~V~~Gk~yRlRiINaa~ 236 (596)
T PLN00044 173 ARDHRALRRAL-DAGDL-LGAPDGVLINAFGPYQYNDSL--------------VPPGITYERINVDPGKTYRFRVHNVGV 236 (596)
T ss_pred cCCHHHHHHHH-hcCCC-CCCCCceEEcccCccccCCcc--------------ccCCCccceEEECCCCEEEEEEEEccC
Confidence 98866543222 22222 457899999999875 2221 011223458999999999999999999
Q ss_pred cceEEEEeCCCeeEEEecCCccccceEEeEEEEccCceEEEEEEeCCCCCCceEEEEEee-cCCCCCCCCCeEEEEEecC
Q 007890 263 LSALSFQIEGHNMTVVEADGHNVEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIV-SRNATFTTPPGLAILNYYP 341 (586)
Q Consensus 263 ~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~~~~~-~~~~~~~~~~~~ail~y~~ 341 (586)
...+.|+|+||+|+|||+||.+++|+.++.|.|++||||||+|++++.++++|||++... ..+..+....+.|||+|.+
T Consensus 237 ~~~~~fsIdgH~mtVIa~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~~~~~~~~~AIl~Y~~ 316 (596)
T PLN00044 237 ATSLNFRIQGHNLLLVEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAAVVDKLTGVAILHYSN 316 (596)
T ss_pred CceEEEEECCCEEEEEEeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCccccCcceeEEEEECC
Confidence 999999999999999999999999999999999999999999999984345899998653 2222135667899999986
Q ss_pred CCCCCCCCCCCCCCCC-cCCccccccccccccccCC--CCCCCCCCCceEEEEEeeee---------cCCCeEEEEEcCc
Q 007890 342 NHPKRSPPTTPPSGPL-WNDVGSRLNQSLAIKARKG--FIIPPPQSADRMIVMLNTQN---------NVSGNVRWSVNKV 409 (586)
Q Consensus 342 ~~~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~~~~~~~~~~~---------~~~g~~~~~iNg~ 409 (586)
+......+ .|..|. +++...+..+...++.... ...++|...+....+...+. ...|+..|+|||+
T Consensus 317 ~~~~~~~~--~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~Nnv 394 (596)
T PLN00044 317 SQGPASGP--LPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELIDGKLRATLNEI 394 (596)
T ss_pred CCCCCCCC--CCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccccccccCCeEEEEECcc
Confidence 54221111 244443 5555433333333332221 11222322233222222211 0124678999999
Q ss_pred cccCCCCchHHHhhhccccCCCCCCCCCCCCccccccccCcCCccccccceEEEecCCCEEEEEEecCCCCCCCCCCCCC
Q 007890 410 TYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRNGVYRLNFNSTVDIILQNANSLSNKTSETHP 489 (586)
Q Consensus 410 ~~~~p~~p~l~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~~~~HP 489 (586)
+|..|++|+|.+.+.++.+.|+.+.+. .+| .......+.++.++.|++|||+|+|.... .||
T Consensus 395 sf~~p~~p~L~a~~~~~~gv~~~~fp~-----------~pp-~~~~~~~t~v~~~~~n~~VeiV~qn~~~~------~HP 456 (596)
T PLN00044 395 SYIAPSTPLMLAQIFNVPGVFKLDFPN-----------HPM-NRLPKLDTSIINGTYKGFMEIIFQNNATN------VQS 456 (596)
T ss_pred cCCCCCCcchhhhhccCCCcccCCCCC-----------CCC-ccccccCceEEEcCCCCEEEEEEeCCCCC------CCC
Confidence 999999999987777777766422111 011 11223356788999999999999997554 899
Q ss_pred ccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEeCCceeeEEeecchhhhhcCceEEEe---
Q 007890 490 WHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRADNPGAWAFHCHIESHFYMGMGVVFA--- 566 (586)
Q Consensus 490 ~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~--- 566 (586)
||||||+|+||+.|.|.|++. +...+|+.||++|||+.||++||++|||++||||.|+|||||+.|+..||.++|.
T Consensus 457 ~HLHGh~F~Vvg~G~G~~~~~-~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~ 535 (596)
T PLN00044 457 YHLDGYAFFVVGMDYGLWTDN-SRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVN 535 (596)
T ss_pred eeEcCccEEEEeecCCCCCCC-cccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEec
Confidence 999999999999999999865 5568999999999999999999999999999999999999999999999999993
Q ss_pred --cc-cccccCCCCCcccCCCCC
Q 007890 567 --EG-IERLGELPSSIKGCVHRK 586 (586)
Q Consensus 567 --~~-~~~~~~~P~~~~~C~~~~ 586 (586)
++ .+++.++|++++.||..|
T Consensus 536 ~~~~~~~~~~~pP~~~~~Cg~~~ 558 (596)
T PLN00044 536 PEDNSNKTVLPIPDNAIFCGALS 558 (596)
T ss_pred CCCCccccccCCCcccCcccccc
Confidence 33 456788999999998643
No 5
>PLN02835 oxidoreductase
Probab=100.00 E-value=5e-104 Score=852.86 Aligned_cols=495 Identities=27% Similarity=0.491 Sum_probs=390.7
Q ss_pred cccceEEEEEEEEEEeeCCCCceeEEEEECCCCCCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCcc
Q 007890 38 AEARIRRYKWEVKYEYKSPDCFRKVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGV 117 (586)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~dg~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~ 117 (586)
+.+++++|+|++++..+++||+.+++|+|||++|||+|++++||+|+|+|+|+ ++++|+|||||++|++++|+||+++
T Consensus 25 ~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~-L~~~ttiHWHGl~~~~~~~~DGv~~- 102 (539)
T PLN02835 25 GEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINK-LDQPFLLTWNGIKQRKNSWQDGVLG- 102 (539)
T ss_pred ccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeC-CCCCCcEEeCCcccCCCCCCCCCcc-
Confidence 45688999999999999999999999999999999999999999999999999 6899999999999999999999999
Q ss_pred ccccCCCCCeEEEEEEc-CCCcceeeeccccccccCcceEEEEEECCCCCCCCC-cccccceEEEEecccCCHHHHHhcc
Q 007890 118 TQCPILPGETFTYKFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPEGESEPY-AYDYDRSIILNDWFHRSAFEQAAGL 195 (586)
Q Consensus 118 ~q~~i~pG~~~~Y~f~~-~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~d~~~~~~~~~~~~~ 195 (586)
+||||+||++|+|+|++ +++||||||||++.|+.+||+|+|||+++++++.|+ .+|+|++|+|+||++++...+...+
T Consensus 103 tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~ 182 (539)
T PLN02835 103 TNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTLLVGDWYKTSHKTLQQRL 182 (539)
T ss_pred CcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEEEeeccccCCHHHHHHHh
Confidence 99999999999999997 799999999999999999999999998765444454 3589999999999999876654333
Q ss_pred cCCCCCCCCCCcceeecCCCCCCCCCCCCCCCccceeecCCCCCCCceEEEEeCCcEEEEEEeecCCcceEEEEeCCCee
Q 007890 196 SSIPFQWVGEPQSLLIQGKGRFNCSSLNSPSLNVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNM 275 (586)
Q Consensus 196 ~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~ 275 (586)
.. +.. .+.++++||||+..+ .++|++|++|||||||+|....+.|+|+||+|
T Consensus 183 ~~-g~~-~~~~d~~liNG~~~~--------------------------~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~ 234 (539)
T PLN02835 183 DS-GKV-LPFPDGVLINGQTQS--------------------------TFSGDQGKTYMFRISNVGLSTSLNFRIQGHTM 234 (539)
T ss_pred hc-CCC-CCCCceEEEccccCc--------------------------eEEECCCCEEEEEEEEcCCCccEEEEECCCEE
Confidence 22 222 457899999999876 68999999999999999999999999999999
Q ss_pred EEEecCCccccceEEeEEEEccCceEEEEEEeCCCCCCceEEEEEeecCCCCCCCCCeEEEEEecCCCCCCCCCCCCCCC
Q 007890 276 TVVEADGHNVEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNYYPNHPKRSPPTTPPSG 355 (586)
Q Consensus 276 ~via~DG~~~~P~~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~ 355 (586)
+|||+||++++|..++.|.|++||||||+|++++ ++|+|||++.....+ ......|||+|+++..... ...|..
T Consensus 235 ~VI~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~-~~g~y~i~a~~~~~~---~~~~~~ail~Y~~~~~~~~--~~~p~~ 308 (539)
T PLN02835 235 KLVEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQ-SPKDYYIVASTRFTR---QILTATAVLHYSNSRTPAS--GPLPAL 308 (539)
T ss_pred EEEEECCccCCCceeeEEEECcCceEEEEEEcCC-CCCcEEEEEEccccC---CCcceEEEEEECCCCCCCC--CCCCCC
Confidence 9999999999999999999999999999999998 568999998653322 2456789999986432111 111222
Q ss_pred CCcC---CccccccccccccccCCCCCCC------CCCCceEEEEEeeeecCCCeEEEEEcCccccCCCCchHHHhhhcc
Q 007890 356 PLWN---DVGSRLNQSLAIKARKGFIIPP------PQSADRMIVMLNTQNNVSGNVRWSVNKVTYTLPHIPYLIALKENI 426 (586)
Q Consensus 356 p~~~---~~~~~~~~~~~~~~~~~~~~~~------p~~~~~~~~~~~~~~~~~g~~~~~iNg~~~~~p~~p~l~~~~~~~ 426 (586)
|..+ +..........+......+... ....++++.+.......+|...|++||++|..|+.|.|.+.+.+.
T Consensus 309 p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~ 388 (539)
T PLN02835 309 PSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGI 388 (539)
T ss_pred CccccccccchhhccccccCccccCCCCCccccccccCCCceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcC
Confidence 2110 1100101000111110000000 011244444332222234567999999999999999988777655
Q ss_pred ccCCCCCCCCCCCCccccccccCcCCccccccceEEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCC
Q 007890 427 TSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRNGVYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGK 506 (586)
Q Consensus 427 ~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~ 506 (586)
.+.|.....+ ..+.+.....++.++.++.|++|||+|+|.+.. .||||||||+||||++|.|.
T Consensus 389 ~~~~~~~~~~-----------~~~~~~~~~~~t~~~~~~~~~~Veivi~N~~~~------~HP~HLHGh~F~Vlg~G~g~ 451 (539)
T PLN02835 389 PGVFSVNSIQ-----------SLPSGGPAFVATSVMQTSLHDFLEVVFQNNEKT------MQSWHLDGYDFWVVGYGSGQ 451 (539)
T ss_pred CCccccCccc-----------cCCCCCccccCCeEEEcCCCCEEEEEEECCCCC------CCCCCCCCccEEEEeccCCC
Confidence 5544321100 011112234457789999999999999998765 89999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEeCCceeeEEeecchhhhhcCceEEE-----ecccccccCCCCCccc
Q 007890 507 FDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRADNPGAWAFHCHIESHFYMGMGVVF-----AEGIERLGELPSSIKG 581 (586)
Q Consensus 507 ~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~-----~~~~~~~~~~P~~~~~ 581 (586)
|++. ....+|+.||++|||+.||++||++|||+|||||.|+|||||++|+..||+++| .++.+++.++|+++++
T Consensus 452 ~~~~-~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~ 530 (539)
T PLN02835 452 WTPA-KRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALL 530 (539)
T ss_pred CCcc-cccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCccccc
Confidence 8754 345678999999999999999999999999999999999999999999999999 4455777889999999
Q ss_pred CCCCC
Q 007890 582 CVHRK 586 (586)
Q Consensus 582 C~~~~ 586 (586)
||..|
T Consensus 531 Cg~~~ 535 (539)
T PLN02835 531 CGKAI 535 (539)
T ss_pred cccCc
Confidence 99754
No 6
>PLN02991 oxidoreductase
Probab=100.00 E-value=5.4e-104 Score=847.96 Aligned_cols=493 Identities=30% Similarity=0.524 Sum_probs=393.4
Q ss_pred cccceEEEEEEEEEEeeCCCCceeEEEEECCCCCCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCcc
Q 007890 38 AEARIRRYKWEVKYEYKSPDCFRKVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGV 117 (586)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~dg~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~ 117 (586)
+.+++++|+|+|++..++|||+.|.+++|||++|||+|++++||+|+|+|+|+ ++++|+|||||++|.+++|+||+++
T Consensus 24 ~~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~-L~~~ttiHWHGi~q~~~~~~DGv~~- 101 (543)
T PLN02991 24 AEDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNH-LDEPFLISWSGIRNWRNSYQDGVYG- 101 (543)
T ss_pred ccCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCC-CCCCccEEECCcccCCCccccCCCC-
Confidence 34678999999999999999999999999999999999999999999999999 6899999999999999999999998
Q ss_pred ccccCCCCCeEEEEEEc-CCCcceeeeccccccccCcceEEEEEECCCCCCCCC-cccccceEEEEecccCCHHHHHhcc
Q 007890 118 TQCPILPGETFTYKFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPEGESEPY-AYDYDRSIILNDWFHRSAFEQAAGL 195 (586)
Q Consensus 118 ~q~~i~pG~~~~Y~f~~-~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~d~~~~~~~~~~~~~ 195 (586)
+||||+||++|+|+|++ +++||||||||.+.|+.+||+|+|||+++++++.|+ .+|+|++|+|+||+++....+...+
T Consensus 102 tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~~ 181 (543)
T PLN02991 102 TTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLRAQL 181 (543)
T ss_pred CCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHHHHh
Confidence 99999999999999999 699999999999999999999999999886655565 4688999999999999876654433
Q ss_pred cCCCCCCCCCCcceeecCCCCCCCCCCCCCCCccceeecCCCCCCCceEEEEeCCcEEEEEEeecCCcceEEEEeCCCee
Q 007890 196 SSIPFQWVGEPQSLLIQGKGRFNCSSLNSPSLNVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNM 275 (586)
Q Consensus 196 ~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~ 275 (586)
. .+.. .+.++++||||++.. ++++|++|++|||||||+|....+.|+|+||+|
T Consensus 182 ~-~~~~-~~~~d~~liNG~~~~-------------------------~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~ 234 (543)
T PLN02991 182 D-NGGK-LPLPDGILINGRGSG-------------------------ATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTM 234 (543)
T ss_pred h-cCCC-CCCCCEEEEccCCCC-------------------------ceEEECCCCEEEEEEEeccCCeeEEEEECCCEE
Confidence 2 2222 457899999999764 269999999999999999999999999999999
Q ss_pred EEEecCCccccceEEeEEEEccCceEEEEEEeCCCCCCceEEEEEeecCCCCCCCCCeEEEEEecCCCCCCCCCCCCCCC
Q 007890 276 TVVEADGHNVEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNYYPNHPKRSPPTTPPSG 355 (586)
Q Consensus 276 ~via~DG~~~~P~~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~ 355 (586)
+|||+||.+++|..++.+.|++||||||+|++++ ++|+|||++...... ....+.|||+|+++......+ .|..
T Consensus 235 tVIa~DG~~~~p~~~~~l~i~~GQRydvlv~a~~-~~~~y~i~~~~~~~~---~~~~~~AIl~Y~g~~~~~~~~--~p~~ 308 (543)
T PLN02991 235 KLVEVEGTHTIQTPFSSLDVHVGQSYSVLITADQ-PAKDYYIVVSSRFTS---KILITTGVLHYSNSAGPVSGP--IPDG 308 (543)
T ss_pred EEEEeCCccccceeeeEEEEcCCcEEEEEEECCC-CCCcEEEEEeeccCC---CCcceEEEEEeCCCCCCCCCC--CCCC
Confidence 9999999999999999999999999999999999 678999999764332 234678999999754321111 1211
Q ss_pred CCcCCcc--ccccccccccccCCCCCCCCC--------CCceEEEEEeeeecCCCeEEEEEcCccccCCCCchHHHhhhc
Q 007890 356 PLWNDVG--SRLNQSLAIKARKGFIIPPPQ--------SADRMIVMLNTQNNVSGNVRWSVNKVTYTLPHIPYLIALKEN 425 (586)
Q Consensus 356 p~~~~~~--~~~~~~~~~~~~~~~~~~~p~--------~~~~~~~~~~~~~~~~g~~~~~iNg~~~~~p~~p~l~~~~~~ 425 (586)
|.-.... ........+.... ....|. ..++.+.+.......++...|+|||.+|..|+.|.|...+..
T Consensus 309 p~~~~~~~~~~~~~~~~l~p~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~ 386 (543)
T PLN02991 309 PIQLSWSFDQARAIKTNLTASG--PRPNPQGSYHYGKINITRTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFK 386 (543)
T ss_pred CccccccccchhhhhhcccCCC--CCCCCCccccccccccceeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhc
Confidence 1100000 0001111121111 111121 122333332211112356789999999999999999887777
Q ss_pred cccCCCCCCCCCCCCccccccccCcCCccccccceEEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecC
Q 007890 426 ITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRNGVYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEG 505 (586)
Q Consensus 426 ~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g 505 (586)
+.|.|+++.-+. .+.+......+.++.++.|++|||+|+|.... .||||||||+||||++|.|
T Consensus 387 ~~g~~~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~------~HP~HLHGh~F~Vvg~G~G 449 (543)
T PLN02991 387 IAGVYNPGSIPD-----------QPTNGAIFPVTSVMQTDYKAFVEIVFENWEDI------VQTWHLDGYSFYVVGMELG 449 (543)
T ss_pred ccCccccccccc-----------cCCCCccccCCcEEEcCCCCEEEEEEeCCCCC------CCCeeeCCcceEEEEeCCC
Confidence 777664321111 01111122345578999999999999998765 8999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEeCCceeeEEeecchhhhhcCceEEE-----ecccccccCCCCCcc
Q 007890 506 KFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRADNPGAWAFHCHIESHFYMGMGVVF-----AEGIERLGELPSSIK 580 (586)
Q Consensus 506 ~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~-----~~~~~~~~~~P~~~~ 580 (586)
.|++. +...+|+.||++|||+.||++||++|||++||||.|+|||||.+|+..||.+++ .++.+++.++|++++
T Consensus 450 ~f~~~-~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~ 528 (543)
T PLN02991 450 KWSAA-SRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNAL 528 (543)
T ss_pred CCCcc-cccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCcccC
Confidence 99865 457899999999999999999999999999999999999999999999999999 455667788999999
Q ss_pred cCCCC
Q 007890 581 GCVHR 585 (586)
Q Consensus 581 ~C~~~ 585 (586)
+||..
T Consensus 529 ~Cg~~ 533 (543)
T PLN02991 529 LCGRA 533 (543)
T ss_pred ccccC
Confidence 99854
No 7
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=1.4e-103 Score=850.32 Aligned_cols=517 Identities=29% Similarity=0.520 Sum_probs=395.0
Q ss_pred HHHHHHHHHHhhccccccccceEEEEEEEEEEeeCCCCceeEEEEECCCCCCCcEEeecCCEEEEEEEeCCCCCCeeEEe
Q 007890 21 LLALCVLIFSLANIVPMAEARIRRYKWEVKYEYKSPDCFRKVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHW 100 (586)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dg~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~ 100 (586)
++++|+++++..+....+.+.+++|+|++++...+|||+.|++++|||++|||+|++++||+|+|+|+|+ ++++|+|||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~-l~~~ttiHW 84 (552)
T PLN02354 6 LLAVLLCLAAAVALVVRAEDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNN-LDEPFLLTW 84 (552)
T ss_pred HHHHHHHHHHHHHHhhhccccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEEC-CCCCccccc
Confidence 3444433333333333455678999999999999999999999999999999999999999999999999 689999999
Q ss_pred cceeeccCCCCCCCCccccccCCCCCeEEEEEEc-CCCcceeeeccccccccCcceEEEEEECCCCCCCCCc-ccccceE
Q 007890 101 HGIRQIGTPWADGTEGVTQCPILPGETFTYKFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPEGESEPYA-YDYDRSI 178 (586)
Q Consensus 101 HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~-~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~~-~d~e~~l 178 (586)
||++|.+++|+||+++ |||||+||++|+|+|++ +++||||||||.+.|+.+||+|+|||+++++.+.|++ +|+|++|
T Consensus 85 HGi~q~~~~~~DGv~~-TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l 163 (552)
T PLN02354 85 SGIQQRKNSWQDGVPG-TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTV 163 (552)
T ss_pred ccccCCCCcccCCCcC-CcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEE
Confidence 9999999999999999 99999999999999998 7999999999999999999999999998865445553 4689999
Q ss_pred EEEecccCCHHHHHhcccCCCCCCCCCCcceeecCCCCCCCCCCCCCCCccceeecCCCCCCCceEEEEeCCcEEEEEEe
Q 007890 179 ILNDWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKGRFNCSSLNSPSLNVGIICNETNPECSPYVITVIPGKTYRLRIS 258 (586)
Q Consensus 179 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRli 258 (586)
+|+||+++....+.... ..+.. .+.++++||||++...| ....+.++|++|++||||||
T Consensus 164 ~l~Dw~~~~~~~~~~~~-~~g~~-~~~~d~~liNG~~~~~~-------------------~~~~~~~~v~~Gk~yRlRiI 222 (552)
T PLN02354 164 LIGDWYTKSHTALKKFL-DSGRT-LGRPDGVLINGKSGKGD-------------------GKDEPLFTMKPGKTYRYRIC 222 (552)
T ss_pred EeeeeccCCHHHHHHHH-hcCCC-CCCCCeEEEeCCcCCCC-------------------CCCceEEEECCCCEEEEEEE
Confidence 99999999876654322 22221 45689999999976521 11245799999999999999
Q ss_pred ecCCcceEEEEeCCCeeEEEecCCccccceEEeEEEEccCceEEEEEEeCCCCCCceEEEEEeecCCCCCCCCCeEEEEE
Q 007890 259 SLTALSALSFQIEGHNMTVVEADGHNVEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILN 338 (586)
Q Consensus 259 N~g~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~~~~~~~~~~~~~~~~~ail~ 338 (586)
|+|....+.|+|+||+|+|||+||++++|..++.|.|++||||||+|++++ ++|+|||++.....+ ....+.|||+
T Consensus 223 Na~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydVlv~a~~-~~g~Y~i~a~~~~~~---~~~~~~ail~ 298 (552)
T PLN02354 223 NVGLKSSLNFRIQGHKMKLVEMEGSHVLQNDYDSLDVHVGQCFSVLVTANQ-APKDYYMVASTRFLK---KVLTTTGIIR 298 (552)
T ss_pred ecCCCceEEEEECCceEEEEEeCCcccCCcceeEEEEccCceEEEEEECCC-CCCcEEEEEeccccC---CCccEEEEEE
Confidence 999999999999999999999999999999999999999999999999998 569999998753322 2457789999
Q ss_pred ecCCCCCCCCCCCCCCCCC-cC-CccccccccccccccCCCCCC--C----CCCCceEEEEEeeeecCCCeEEEEEcCcc
Q 007890 339 YYPNHPKRSPPTTPPSGPL-WN-DVGSRLNQSLAIKARKGFIIP--P----PQSADRMIVMLNTQNNVSGNVRWSVNKVT 410 (586)
Q Consensus 339 y~~~~~~~~~~~~~p~~p~-~~-~~~~~~~~~~~~~~~~~~~~~--~----p~~~~~~~~~~~~~~~~~g~~~~~iNg~~ 410 (586)
|+++.....+ ..|..+. +. .......+...+......+.+ . ....++++.+.......++...|+|||++
T Consensus 299 Y~g~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNn~s 376 (552)
T PLN02354 299 YEGGKGPASP--ELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSASKVDGKLRYALNGVS 376 (552)
T ss_pred ECCCCCCCCC--CCCCCCcccccchhhhhhhhhcccccccCCCCCCccccccccccceEEEecccccCCceEEEEECCcc
Confidence 9865432111 1111111 00 000001111111111100000 0 01233444443322123456789999999
Q ss_pred ccCCCCchHHHhhhccc-cCCC----CCCCCCCCCccccccccCcCCccccccceEEEecCCCEEEEEEecCCCCCCCCC
Q 007890 411 YTLPHIPYLIALKENIT-SAFD----QTPPPDGYDFKNYDIFSVAENKSYTIRNGVYRLNFNSTVDIILQNANSLSNKTS 485 (586)
Q Consensus 411 ~~~p~~p~l~~~~~~~~-~~f~----~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~~ 485 (586)
|..|+.|.|.+.+.++. |.++ +..+|. . ......++.++.++.|++|||+|+|.+..
T Consensus 377 ~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~-----~--------~~~~~~~~~v~~~~~~~~VeiVi~n~~~~----- 438 (552)
T PLN02354 377 HVDPETPLKLAEYFGVADKVFKYDTIKDNPPA-----K--------ITKIKIQPNVLNITFRTFVEIIFENHEKS----- 438 (552)
T ss_pred CCCCCCChHHhhhhcccCCccccCccccCCcc-----c--------cCccccCCeeEEcCCCCEEEEEEeCCCCC-----
Confidence 99999999988765443 3332 112221 0 00122345678999999999999998765
Q ss_pred CCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEeCCceeeEEeecchhhhhcCceEEE
Q 007890 486 ETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRADNPGAWAFHCHIESHFYMGMGVVF 565 (586)
Q Consensus 486 ~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~ 565 (586)
.||||||||+||||++|.|.|++. ....+|+.||++|||+.||++||++|||++||||.|+|||||..|+..||.++|
T Consensus 439 -~HP~HLHGh~F~Vlg~G~G~~~~~-~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~ 516 (552)
T PLN02354 439 -MQSWHLDGYSFFAVAVEPGTWTPE-KRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYA 516 (552)
T ss_pred -CCCCcCCCccEEEEeecCCCCCcc-ccccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEE
Confidence 899999999999999999999764 356789999999999999999999999999999999999999888888888777
Q ss_pred --eccccccc---CCCCCcccCCCCC
Q 007890 566 --AEGIERLG---ELPSSIKGCVHRK 586 (586)
Q Consensus 566 --~~~~~~~~---~~P~~~~~C~~~~ 586 (586)
.|+++.++ ++|++.+.||..|
T Consensus 517 ~v~~~~~~~~~~~~~P~~~~~C~~~~ 542 (552)
T PLN02354 517 SVLSPERSLRDEYNMPENALLCGKVK 542 (552)
T ss_pred EEeCCccccCcCCCCCcccccccccc
Confidence 45555554 4899999998654
No 8
>PLN02792 oxidoreductase
Probab=100.00 E-value=2.8e-103 Score=843.99 Aligned_cols=499 Identities=28% Similarity=0.478 Sum_probs=396.4
Q ss_pred cccceEEEEEEEEEEeeCCCCceeEEEEECCCCCCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCcc
Q 007890 38 AEARIRRYKWEVKYEYKSPDCFRKVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGV 117 (586)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~dg~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~ 117 (586)
....+++|+|++++..+++||+.+.+++|||++|||+|++++||+|+|+|+|+ ++++++|||||++|++++|+||+++
T Consensus 12 ~~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~-L~~~ttiHWHGl~q~~~~~~DGv~~- 89 (536)
T PLN02792 12 KADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHND-LDEPFLLSWNGVHMRKNSYQDGVYG- 89 (536)
T ss_pred hcCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeC-CCCCcCEeCCCcccCCCCccCCCCC-
Confidence 55666799999999999999999999999999999999999999999999999 6899999999999999999999988
Q ss_pred ccccCCCCCeEEEEEEc-CCCcceeeeccccccccCcceEEEEEECCCCCCCCCc-ccccceEEEEecccCCHHHHHhcc
Q 007890 118 TQCPILPGETFTYKFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPEGESEPYA-YDYDRSIILNDWFHRSAFEQAAGL 195 (586)
Q Consensus 118 ~q~~i~pG~~~~Y~f~~-~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~~-~d~e~~l~l~d~~~~~~~~~~~~~ 195 (586)
+||||+||++|+|+|++ +++||||||||.+.|+.+||+|+|||+++++++.|+. +|+|++++|+||++++...+....
T Consensus 90 tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~~~~ 169 (536)
T PLN02792 90 TTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLKKIL 169 (536)
T ss_pred CcCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHHHHh
Confidence 89999999999999999 6999999999999999999999999988654445543 588999999999998866543322
Q ss_pred cCCCCCCCCCCcceeecCCCCCCCCCCCCCCCccceeecCCCCCCCceEEEEeCCcEEEEEEeecCCcceEEEEeCCCee
Q 007890 196 SSIPFQWVGEPQSLLIQGKGRFNCSSLNSPSLNVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNM 275 (586)
Q Consensus 196 ~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~ 275 (586)
..+......++++||||++... .+.++|++|++|||||||+|....+.|+|+||+|
T Consensus 170 -~~g~~~~~~~d~~liNG~~~~~-----------------------~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~ 225 (536)
T PLN02792 170 -DGGRKLPLMPDGVMINGQGVSY-----------------------VYSITVDKGKTYRFRISNVGLQTSLNFEILGHQL 225 (536)
T ss_pred -hccCcCCCCCCEEEEeccCCCC-----------------------cceEEECCCCEEEEEEEEcCCCceEEEEECCcEE
Confidence 2222213378999999998752 2379999999999999999999999999999999
Q ss_pred EEEecCCccccceEEeEEEEccCceEEEEEEeCCCCCCceEEEEEeecCCCCCCCCCeEEEEEecCCCCCCCCCCCCCCC
Q 007890 276 TVVEADGHNVEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNYYPNHPKRSPPTTPPSG 355 (586)
Q Consensus 276 ~via~DG~~~~P~~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~ 355 (586)
+|||+||++++|..+++|.|++||||||+|++++ ++|+|||++.....+. ...+.|||+|+++..... ..+..
T Consensus 226 tVI~~DG~~v~p~~~~~l~i~~GqRydVlV~a~~-~~g~Y~i~a~~~~~~~---~~~~~ail~Y~g~~~~~~---~~p~~ 298 (536)
T PLN02792 226 KLIEVEGTHTVQSMYTSLDIHVGQTYSVLVTMDQ-PPQNYSIVVSTRFIAA---KVLVSSTLHYSNSKGHKI---IHARQ 298 (536)
T ss_pred EEEEeCCccCCCcceeEEEEccCceEEEEEEcCC-CCceEEEEEEeccCCC---CCceEEEEEECCCCCCCC---CCCCC
Confidence 9999999999999999999999999999999998 6799999998654332 457789999986543211 12233
Q ss_pred CCcCCccccccccccccccC--CCCCCCCCCC--------ceEEEEEeeeecCCCeEEEEEcCccccCCCCchHHHhhhc
Q 007890 356 PLWNDVGSRLNQSLAIKARK--GFIIPPPQSA--------DRMIVMLNTQNNVSGNVRWSVNKVTYTLPHIPYLIALKEN 425 (586)
Q Consensus 356 p~~~~~~~~~~~~~~~~~~~--~~~~~~p~~~--------~~~~~~~~~~~~~~g~~~~~iNg~~~~~p~~p~l~~~~~~ 425 (586)
|.+++......+...+.... +.+..+|... ++++.+........+...|+|||++|..|++|.|.+.+.+
T Consensus 299 p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~ 378 (536)
T PLN02792 299 PDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKMKISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFK 378 (536)
T ss_pred CCcCCccccccchhhhhhccCCCCCCCCCCcccccceeccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhc
Confidence 33443332222211111110 1112222221 2333222221222346789999999999999999988776
Q ss_pred cccCCCCCCCCCCCCccccccccCcCCccccccceEEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecC
Q 007890 426 ITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRNGVYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEG 505 (586)
Q Consensus 426 ~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g 505 (586)
+.|.|+...-|. .+|...+...++.++.++.|++|||+|+|.... .||||||||+||||++|.|
T Consensus 379 ~~g~~~~~~~~~----------~p~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~------~HP~HLHGh~F~Vvg~G~G 442 (536)
T PLN02792 379 IKGVFKVGSIPD----------KPRRGGGMRLDTSVMGAHHNAFLEIIFQNREKI------VQSYHLDGYNFWVVGINKG 442 (536)
T ss_pred cCCCcCcccCcc----------CCcccCCCccCceEEEcCCCCEEEEEEECCCCC------CCCeeeCCCceEEEeecCC
Confidence 666553211110 111111123356678999999999999997665 8999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEeCCceeeEEeecchhhhhcCceEEE-----ecccccccCCCCCcc
Q 007890 506 KFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRADNPGAWAFHCHIESHFYMGMGVVF-----AEGIERLGELPSSIK 580 (586)
Q Consensus 506 ~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~-----~~~~~~~~~~P~~~~ 580 (586)
.|++. +...+|+.||++||||.||++||++|||+|||||.|+||||+.+|+..||.++| .++.+++.++|.+++
T Consensus 443 ~~~~~-~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~ 521 (536)
T PLN02792 443 IWSRA-SRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNAL 521 (536)
T ss_pred CCCcc-cccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccC
Confidence 99863 456899999999999999999999999999999999999999999999999999 455677888999999
Q ss_pred cCCCCC
Q 007890 581 GCVHRK 586 (586)
Q Consensus 581 ~C~~~~ 586 (586)
+||..|
T Consensus 522 ~Cg~~~ 527 (536)
T PLN02792 522 LCGRAS 527 (536)
T ss_pred cccccc
Confidence 998653
No 9
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=4.7e-102 Score=834.65 Aligned_cols=496 Identities=31% Similarity=0.536 Sum_probs=382.6
Q ss_pred cccceEEEEEEEEEEeeCCCCceeEEEEECCCCCCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCcc
Q 007890 38 AEARIRRYKWEVKYEYKSPDCFRKVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGV 117 (586)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~dg~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~ 117 (586)
+.+++++|+|+|++...+|||+.+++++|||++|||+|++++||+|+|+|+|+ ++++|+|||||++|.+++|+||+++
T Consensus 22 ~~a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~-L~~~ttiHWHGl~~~~~~~~DGv~g- 99 (545)
T PLN02168 22 AFAPIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNN-LTEPFLMTWNGLQLRKNSWQDGVRG- 99 (545)
T ss_pred ccccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeC-CCCCccEeeCCccCCCCCCcCCCCC-
Confidence 34689999999999999999999999999999999999999999999999999 6899999999999999999999999
Q ss_pred ccccCCCCCeEEEEEEc-CCCcceeeeccccccccCcceEEEEEECCCCCCCCC-cccccceEEEEecccCCHHHHHhcc
Q 007890 118 TQCPILPGETFTYKFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPEGESEPY-AYDYDRSIILNDWFHRSAFEQAAGL 195 (586)
Q Consensus 118 ~q~~i~pG~~~~Y~f~~-~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~d~~~~~~~~~~~~~ 195 (586)
+||||+||++|+|+|++ +++||||||||.+.|+.+||+|+|||++++++..|+ .+|+|++|+|+||++.+...+....
T Consensus 100 tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~ 179 (545)
T PLN02168 100 TNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRASL 179 (545)
T ss_pred CcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHhhh
Confidence 99999999999999999 699999999999999999999999999987644554 4588999999999998765443322
Q ss_pred cCCCCCCCCCCcceeecCCCCCCCCCCCCCCCccceeecCCCCCCCceEEEEeCCcEEEEEEeecCCcceEEEEeCCCee
Q 007890 196 SSIPFQWVGEPQSLLIQGKGRFNCSSLNSPSLNVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNM 275 (586)
Q Consensus 196 ~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~ 275 (586)
. .+.. ...++.+||||++.. .++++|++|++|||||||++..+.+.|+|+||+|
T Consensus 180 ~-~g~~-~~~~d~~liNG~~~~------------------------~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~ 233 (545)
T PLN02168 180 D-NGHS-LPNPDGILFNGRGPE------------------------ETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDM 233 (545)
T ss_pred h-cCCC-CCCCCEEEEeccCCC------------------------cceEEeCCCCEEEEEEEeccCCceEEEEECCcEE
Confidence 2 2222 347899999999753 1379999999999999999999999999999999
Q ss_pred EEEecCCccccceEEeEEEEccCceEEEEEEeCCCCCC---ceEEEEEeecCCCCCCCCCeEEEEEecCCCCCCCCCCCC
Q 007890 276 TVVEADGHNVEPFVVQNLFIYSGETYSVLIKADQNPTR---NYWATTNIVSRNATFTTPPGLAILNYYPNHPKRSPPTTP 352 (586)
Q Consensus 276 ~via~DG~~~~P~~~~~l~l~pGqR~dVlv~~~~~~~g---~y~l~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~ 352 (586)
+|||+||.+++|..++.|.|++||||||+|++++.+.| +|||++.....+. ...+.|||+|+++..... .+.
T Consensus 234 tVIa~DG~~v~p~~~~~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~~---~~~~~ail~Y~~~~~~~~--~p~ 308 (545)
T PLN02168 234 LLVETEGTYVQKRVYSSLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTDA---YLGGVALIRYPNSPLDPV--GPL 308 (545)
T ss_pred EEEEECCeECCCceeeEEEEcCCceEEEEEEcCCCCCCCcceEEEEEEecccCC---CcceEEEEEECCCCCCCC--CCC
Confidence 99999999999999999999999999999999864434 8999998754332 467889999986543211 112
Q ss_pred CCCCCcCCcccccccccccc-ccCC-CCCCCCC--------CCceEEEEEeeeecCCCeEEEEEcCccccCCCCchHHHh
Q 007890 353 PSGPLWNDVGSRLNQSLAIK-ARKG-FIIPPPQ--------SADRMIVMLNTQNNVSGNVRWSVNKVTYTLPHIPYLIAL 422 (586)
Q Consensus 353 p~~p~~~~~~~~~~~~~~~~-~~~~-~~~~~p~--------~~~~~~~~~~~~~~~~g~~~~~iNg~~~~~p~~p~l~~~ 422 (586)
+..|.+.+.....++...+. ...+ .....|. ..++++.+.......++...|+|||.+|..|++|.|...
T Consensus 309 p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~ 388 (545)
T PLN02168 309 PLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVD 388 (545)
T ss_pred CCCCcccccccccchhhhhhhcCCCCCCCCCCcccccccccccceeEEecccccccCceEEEEECCCccCCCCCchhhhh
Confidence 33344333322222221111 0111 0111111 123333332211112356789999999999999998777
Q ss_pred hhccccCCCCCCCCCCCCccccccccCcCCccccccceEEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEee
Q 007890 423 KENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRNGVYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGY 502 (586)
Q Consensus 423 ~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~ 502 (586)
+.++.+.+....-|. .|.+.....++.++.++.|++|||+|+|.... .||||||||+||||++
T Consensus 389 ~~~~~~~~~~~~~~~-----------~p~~~~~~~~~~v~~~~~~~~VeiViqn~~~~------~HP~HLHGh~F~Vvg~ 451 (545)
T PLN02168 389 HFQLNDTIIPGMFPV-----------YPSNKTPTLGTSVVDIHYKDFYHIVFQNPLFS------LESYHIDGYNFFVVGY 451 (545)
T ss_pred hcccccccccCCCcc-----------CCCcCccccCceEEEecCCCEEEEEEeCCCCC------CCCeeeCCCceEEEEC
Confidence 655433221110010 01011112235678999999999999997655 8999999999999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEeCCceeeEEeecchhhhhcCceEEEec------cc-----cc
Q 007890 503 GEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRADNPGAWAFHCHIESHFYMGMGVVFAE------GI-----ER 571 (586)
Q Consensus 503 g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~~------~~-----~~ 571 (586)
|.|.|++. ....+|+.||++|||+.||++||++|||+|||||.|+|||||++|...||.+.+.+ .| ++
T Consensus 452 g~g~~~~~-~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~ 530 (545)
T PLN02168 452 GFGAWSES-KKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRD 530 (545)
T ss_pred CCCCCCcc-ccccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcccccCcccccccc
Confidence 99999854 34578999999999999999999999999999999999999966666666655532 22 34
Q ss_pred ccCCCCCcccCCC
Q 007890 572 LGELPSSIKGCVH 584 (586)
Q Consensus 572 ~~~~P~~~~~C~~ 584 (586)
+.++|+++++||.
T Consensus 531 ~~~~P~~~~~cg~ 543 (545)
T PLN02168 531 ENPIPGNVIRCGK 543 (545)
T ss_pred ccCCChhhccccc
Confidence 4569999999984
No 10
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=1.6e-101 Score=841.15 Aligned_cols=515 Identities=35% Similarity=0.595 Sum_probs=397.4
Q ss_pred cceEEEEEEEEEEeeCCCCceeEEEEECCCCCCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCcccc
Q 007890 40 ARIRRYKWEVKYEYKSPDCFRKVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQ 119 (586)
Q Consensus 40 ~~~~~~~l~~~~~~~~~dg~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q 119 (586)
+++|+|+|+|++..+++||++|.+|+|||++|||+|++++||+|+|+|+|+ ++++++|||||++|.+++|+||++++||
T Consensus 1 ~~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~-l~~~tsiHwHGl~q~~~~~~DGv~~vTq 79 (539)
T TIGR03389 1 AEVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNN-VQYNVTIHWHGVRQLRNGWADGPAYITQ 79 (539)
T ss_pred CceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeC-CCCCeeEecCCCCCCCCCCCCCCccccc
Confidence 468999999999999999999999999999999999999999999999999 6899999999999999999999999999
Q ss_pred ccCCCCCeEEEEEEc-CCCcceeeeccccccccCcceEEEEEECCCCCCCCC-cccccceEEEEecccCCHHHHHhcccC
Q 007890 120 CPILPGETFTYKFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPEGESEPY-AYDYDRSIILNDWFHRSAFEQAAGLSS 197 (586)
Q Consensus 120 ~~i~pG~~~~Y~f~~-~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~d~~~~~~~~~~~~~~~ 197 (586)
|+|+||++|+|+|++ +++||||||||...|+ +||+|+|||+++.+...|+ .+|+|++|+|+||+++....++.....
T Consensus 80 ~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~-~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~ 158 (539)
T TIGR03389 80 CPIQPGQSYVYNFTITGQRGTLWWHAHISWLR-ATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQ 158 (539)
T ss_pred CCcCCCCeEEEEEEecCCCeeEEEecCchhhh-ccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHh
Confidence 999999999999999 6999999999987665 5899999999886544454 358899999999999988776554443
Q ss_pred CCCCCCCCCcceeecCCCCCCCCCCCCCCCccceeecCCCCCCCceEEEEeCCcEEEEEEeecCCcceEEEEeCCCeeEE
Q 007890 198 IPFQWVGEPQSLLIQGKGRFNCSSLNSPSLNVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTV 277 (586)
Q Consensus 198 ~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~v 277 (586)
.+.. +..++++||||+..+. +.|+ .....+++|++|++|||||||+|....+.|+|+||+|+|
T Consensus 159 ~~~~-~~~~d~~liNG~~~~~------------~~~~----~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~V 221 (539)
T TIGR03389 159 TGGA-PNVSDAYTINGHPGPL------------YNCS----SKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTV 221 (539)
T ss_pred cCCC-CCccceEEECCCcCCC------------CCCC----CCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEE
Confidence 3322 4467999999997540 1122 123458999999999999999999999999999999999
Q ss_pred EecCCccccceEEeEEEEccCceEEEEEEeCCCCCCceEEEEEeecCCCC-CCCCCeEEEEEecCCCCCCCCCCCCCCCC
Q 007890 278 VEADGHNVEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNAT-FTTPPGLAILNYYPNHPKRSPPTTPPSGP 356 (586)
Q Consensus 278 ia~DG~~~~P~~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~~~~~~~~~~-~~~~~~~ail~y~~~~~~~~~~~~~p~~p 356 (586)
||+||.+++|+.++++.|++||||||+|++++ ++|+||||+....++.. +......|||+|++......+. .+..+
T Consensus 222 Ia~DG~~~~P~~~~~l~i~~GqRydVlv~a~~-~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~--~~~~~ 298 (539)
T TIGR03389 222 VEVDATYTKPFKTKTIVIGPGQTTNVLLTADQ-SPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPI--LPTLP 298 (539)
T ss_pred EEeCCcccCceEeCeEEecCCCEEEEEEECCC-CCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCC--CCCCC
Confidence 99999999999999999999999999999988 56999999987544421 2345689999998654321111 12222
Q ss_pred CcCCccccccccccccccC--CCCCCCCCCCceEEEEEeeeec-----------CCCeEEEEEcCccccCCCCchHHHhh
Q 007890 357 LWNDVGSRLNQSLAIKARK--GFIIPPPQSADRMIVMLNTQNN-----------VSGNVRWSVNKVTYTLPHIPYLIALK 423 (586)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~-----------~~g~~~~~iNg~~~~~p~~p~l~~~~ 423 (586)
.+++..........+.... .++..+|...++++.+....+. ......|.|||++|..|+.|.|.+.+
T Consensus 299 ~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~ 378 (539)
T TIGR03389 299 AYNDTAAATNFSNKLRSLNSAQYPANVPVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHY 378 (539)
T ss_pred CCCchhhhhHHHhhcccccccCCCCCCCCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhh
Confidence 2222211111111122111 1122233455666655443221 11246899999999999999987776
Q ss_pred hccccCCC---CCCCCCCCCccccccccCcCCccccccceEEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEE
Q 007890 424 ENITSAFD---QTPPPDGYDFKNYDIFSVAENKSYTIRNGVYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVL 500 (586)
Q Consensus 424 ~~~~~~f~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl 500 (586)
.++.+.+. +..+|. .| ++.....+.+.....++.++.++.|++||++|+|.+.+ ....||||||||+||||
T Consensus 379 ~~~~~~~~~~~~~~~p~--~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~---~~~~HP~HLHGh~F~Vl 452 (539)
T TIGR03389 379 FGISGVFTTDFPANPPT--KF-NYTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSIL---GSENHPIHLHGYNFFVV 452 (539)
T ss_pred cccCCccccCCccCCCc--cc-cCCCCCcccccccccCceEEEecCCCEEEEEEecCCcC---CCCCCcEeEcCCceEEE
Confidence 65544332 123343 11 11111101111123356789999999999999997532 12289999999999999
Q ss_pred eeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEeCCceeeEEeecchhhhhcCceEEEec-----ccccccCC
Q 007890 501 GYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRADNPGAWAFHCHIESHFYMGMGVVFAE-----GIERLGEL 575 (586)
Q Consensus 501 ~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~~-----~~~~~~~~ 575 (586)
++|.|.|+.......+|+.||++|||+.||++||++|||++||||.|+|||||+||+..||+++|.| +.++++++
T Consensus 453 g~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~ 532 (539)
T TIGR03389 453 GTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPP 532 (539)
T ss_pred EeccCCCCcccCccccccCCCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCC
Confidence 9999998865445578999999999999999999999999999999999999999999999999965 44667889
Q ss_pred CCCcccC
Q 007890 576 PSSIKGC 582 (586)
Q Consensus 576 P~~~~~C 582 (586)
|+.+++|
T Consensus 533 p~~~~~c 539 (539)
T TIGR03389 533 PSDLPSC 539 (539)
T ss_pred CccCCCC
Confidence 9999999
No 11
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=4.3e-95 Score=787.63 Aligned_cols=494 Identities=32% Similarity=0.592 Sum_probs=377.8
Q ss_pred EEEEEEEEEEeeCCCCceeEEEEECCCCCCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccC
Q 007890 43 RRYKWEVKYEYKSPDCFRKVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPI 122 (586)
Q Consensus 43 ~~~~l~~~~~~~~~dg~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i 122 (586)
-.|+|++++..+++||+.|.+++|||++|||+|++++||+|+|+|+|+|.+++|+|||||++|.+++|+||+|++|||||
T Consensus 9 ~~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI 88 (538)
T TIGR03390 9 PDHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPI 88 (538)
T ss_pred ccEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCC
Confidence 46899999999999999999999999999999999999999999999976699999999999999999999999999999
Q ss_pred CCCCeEEEEEEc--CCCcceeeeccccccccCcceEEEEEECCCCCCCCCcccccceEEEEecccCCHHHHHhcccCCCC
Q 007890 123 LPGETFTYKFVV--DRPGTYLYHAHYGMQREAGLYGSIRVSLPEGESEPYAYDYDRSIILNDWFHRSAFEQAAGLSSIPF 200 (586)
Q Consensus 123 ~pG~~~~Y~f~~--~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~d~e~~l~l~d~~~~~~~~~~~~~~~~~~ 200 (586)
+||++|+|+|++ +++||||||||.+.|+. ||+|+|||++++. .++.||+|++|+|+||+++...++...+.....
T Consensus 89 ~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~-~l~G~lIV~~~~~--~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~ 165 (538)
T TIGR03390 89 PPGHFFDYEIKPEPGDAGSYFYHSHVGFQAV-TAFGPLIVEDCEP--PPYKYDDERILLVSDFFSATDEEIEQGLLSTPF 165 (538)
T ss_pred CCCCcEEEEEEecCCCCeeeEEecCCchhhh-cceeEEEEccCCc--cCCCccCcEEEEEeCCCCCCHHHHHhhhhccCC
Confidence 999999999997 58999999999999987 5999999998753 467789999999999999988776554443333
Q ss_pred CCCCCCcceeecCCCCCCCCCCCCCCCccceeecCCCCCCCceEEEEeCCcEEEEEEeecCCcceEEEEeCCCe-eEEEe
Q 007890 201 QWVGEPQSLLIQGKGRFNCSSLNSPSLNVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHN-MTVVE 279 (586)
Q Consensus 201 ~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~-~~via 279 (586)
.+..+++++||||++.+.|... .++ ....+..++++|++|++|||||||+|....+.|+|++|+ |+|||
T Consensus 166 ~~~~~~d~~liNG~~~~~~~~~---------~~~-~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa 235 (538)
T TIGR03390 166 TWSGETEAVLLNGKSGNKSFYA---------QIN-PSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIE 235 (538)
T ss_pred ccCCCCceEEECCccccccccc---------ccc-CCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEE
Confidence 3345679999999987644210 011 112334568999999999999999999999999999999 99999
Q ss_pred cCCccccceEEeEEEEccCceEEEEEEeCCCC------CCceEEEEEeecCCCCCCCCCeEEEEEecCCCCCCCCCCCCC
Q 007890 280 ADGHNVEPFVVQNLFIYSGETYSVLIKADQNP------TRNYWATTNIVSRNATFTTPPGLAILNYYPNHPKRSPPTTPP 353 (586)
Q Consensus 280 ~DG~~~~P~~~~~l~l~pGqR~dVlv~~~~~~------~g~y~l~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p 353 (586)
+||++++|+.++.|.|++||||||+|++++.+ +++||||+.....+. ...+.|||+|+++.....+. .+
T Consensus 236 ~DG~~~~P~~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~---~~~~~aiL~Y~~~~~~~~~~--~p 310 (538)
T TIGR03390 236 ADGSYTKPAKIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPK---VYRGYAVLRYRSDKASKLPS--VP 310 (538)
T ss_pred eCCCCCCceEeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCC---cceEEEEEEeCCCCCCCCCC--CC
Confidence 99999999999999999999999999999732 489999997654432 34578999998543222111 11
Q ss_pred CCCCc---CCccccccccccccccCC--CC-CCCCCCCceEEEEEeeeec--CCCeEEEEEcCccccC--CCCchHHHhh
Q 007890 354 SGPLW---NDVGSRLNQSLAIKARKG--FI-IPPPQSADRMIVMLNTQNN--VSGNVRWSVNKVTYTL--PHIPYLIALK 423 (586)
Q Consensus 354 ~~p~~---~~~~~~~~~~~~~~~~~~--~~-~~~p~~~~~~~~~~~~~~~--~~g~~~~~iNg~~~~~--p~~p~l~~~~ 423 (586)
..+.. .......+. .+..... .+ .+++...++++.+...+.. .++...|.+||++|.. |+.|.|....
T Consensus 311 ~~~~~~~~~~~~~~~~~--~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~ 388 (538)
T TIGR03390 311 ETPPLPLPNSTYDWLEY--ELEPLSEENNQDFPTLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIY 388 (538)
T ss_pred CCCCCCccCcchhhhhe--eeEecCccccCCCCCCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHh
Confidence 11111 111001111 1221111 00 1223456777776665432 2456789999999986 7899988775
Q ss_pred hccccCCCCCCCCCCCCccccccccCcCCccccccceEEEecCCCEEEEEEecCCCCCC--CCCCCCCccccCCCeEEEe
Q 007890 424 ENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRNGVYRLNFNSTVDIILQNANSLSN--KTSETHPWHLHGHDFWVLG 501 (586)
Q Consensus 424 ~~~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~--~~~~~HP~HlHG~~F~Vl~ 501 (586)
.+. +. .. + .|+. ..........+.++.++.|++|||+|+|.....+ .....||||||||+||||+
T Consensus 389 ~~~---~~-~~-~------~~~~--~~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg 455 (538)
T TIGR03390 389 ENG---LP-AT-P------NYTA--ALANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIG 455 (538)
T ss_pred cCC---CC-cC-C------Cccc--ccccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEc
Confidence 321 10 00 0 0000 0000001123446889999999999999742100 0123899999999999999
Q ss_pred eecCCCCCCCCCCCCCCCCCCcceeEEeC----------CCCEEEEEEEeCCceeeEEeecchhhhhcCceEEEeccc
Q 007890 502 YGEGKFDIYNDPKKYNLVNPIMKNTVPVH----------RYGWTALRFRADNPGAWAFHCHIESHFYMGMGVVFAEGI 569 (586)
Q Consensus 502 ~g~g~~~~~~~~~~~n~~~p~~rDTv~vp----------p~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~~~~ 569 (586)
+|.|.|+.......+|+.||++|||+.|| +++|++|||++||||.|+|||||+||+.+||+++|.+..
T Consensus 456 ~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~ 533 (538)
T TIGR03390 456 GGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGD 533 (538)
T ss_pred ccccccCCccChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCC
Confidence 99999986544456888999999999996 789999999999999999999999999999999998754
No 12
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.4e-95 Score=771.79 Aligned_cols=513 Identities=40% Similarity=0.672 Sum_probs=414.4
Q ss_pred ccccccceEEEEEEEEEEeeCCCCceeEEEEECCCCCCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCC
Q 007890 35 VPMAEARIRRYKWEVKYEYKSPDCFRKVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGT 114 (586)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~~~dg~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv 114 (586)
...+.+.++.++++++...+.++|..++++++||++|||+|++++||+|.|+|.|+ ++++++|||||++|..++|+||
T Consensus 21 ~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~-~~~~~sihWhGv~q~kn~w~DG- 98 (563)
T KOG1263|consen 21 FSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNR-LDEPFSIHWHGVRQRKNPWQDG- 98 (563)
T ss_pred HhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeC-CCCceEEEeccccccCCccccC-
Confidence 45688999999999999999999999999999999999999999999999999999 7899999999999999999999
Q ss_pred CccccccCCCCCeEEEEEEc-CCCcceeeeccccccccCcceEEEEEECCCCCCCCCc-ccccceEEEEecccC-CHHHH
Q 007890 115 EGVTQCPILPGETFTYKFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPEGESEPYA-YDYDRSIILNDWFHR-SAFEQ 191 (586)
Q Consensus 115 ~~~~q~~i~pG~~~~Y~f~~-~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~~-~d~e~~l~l~d~~~~-~~~~~ 191 (586)
+++|||||+||++|+|+|++ +|.||||||+|++.|+++|++|+|||+++...+.|+. +|+|++|+++||+.+ ....+
T Consensus 99 ~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~~~l 178 (563)
T KOG1263|consen 99 VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNHKNL 178 (563)
T ss_pred CccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCHHHH
Confidence 99999999999999999999 5999999999999999999999999999987666776 489999999999996 55555
Q ss_pred HhcccCCCCCCCCCCcceeecCCCCCCCCCCCCCCCccceeecCCCCCCCceEEEEeCCcEEEEEEeecCCcceEEEEeC
Q 007890 192 AAGLSSIPFQWVGEPQSLLIQGKGRFNCSSLNSPSLNVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIE 271 (586)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~ 271 (586)
.......+. .+..+|..+|||+..+ + +.| .++++|++|++|||||+|+|....+.|+|+
T Consensus 179 ~~~~~~~~~-~p~~~D~~~iNg~~g~---~---------~~~--------~~~l~v~pGktY~lRiiN~g~~~~l~F~I~ 237 (563)
T KOG1263|consen 179 KNFLDRTGA-LPNPSDGVLINGRSGF---L---------YNC--------TPTLTVEPGKTYRLRIINAGLNTSLNFSIA 237 (563)
T ss_pred HHhhccCCC-CCCCCCceEECCCCCc---c---------cCc--------eeEEEEcCCCEEEEEEEccccccceEEEEC
Confidence 444444433 3445899999999965 1 112 358999999999999999999999999999
Q ss_pred CCeeEEEecCCccccceEEeEEEEccCceEEEEEEeCCCCCCceEEEEEeecCCCC-CCCCCeEEEEEecCCCCC-CCCC
Q 007890 272 GHNMTVVEADGHNVEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNAT-FTTPPGLAILNYYPNHPK-RSPP 349 (586)
Q Consensus 272 gh~~~via~DG~~~~P~~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~~~~~~~~~~-~~~~~~~ail~y~~~~~~-~~~~ 349 (586)
+|+|+||++||.+++|..+++|.|.|||||||+|++++ .+++|+|++.....+.. .......++++|.+.... ....
T Consensus 238 ~H~ltvVe~Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq-~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~ 316 (563)
T KOG1263|consen 238 NHQLTVVEVDGAYTKPFTTDSLDIHPGQTYSVLLTADQ-SPGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKL 316 (563)
T ss_pred CeEEEEEEecceEEeeeeeceEEEcCCcEEEEEEeCCC-CCCcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccC
Confidence 99999999999999999999999999999999999999 55699999988655431 116678999999862211 1111
Q ss_pred CCCCCCCCcCCccccccccccccccCC--CCCCCCCCCceEEEEEee--------eecCCCeEEEEEcCccccCCCCchH
Q 007890 350 TTPPSGPLWNDVGSRLNQSLAIKARKG--FIIPPPQSADRMIVMLNT--------QNNVSGNVRWSVNKVTYTLPHIPYL 419 (586)
Q Consensus 350 ~~~p~~p~~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~~~~~~~~~--------~~~~~g~~~~~iNg~~~~~p~~p~l 419 (586)
...+..|...+...+..+...++.... ++.+.|.+.++......+ .+..+++.+++||+.+|..|++|.+
T Consensus 317 ~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~ 396 (563)
T KOG1263|consen 317 PIYPFLPPGNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSL 396 (563)
T ss_pred cccccCCcccCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchh
Confidence 112233443444444444444444321 123445555444333222 1123567899999999999999998
Q ss_pred HHhhhcccc-CCC---CCCCCCCCCccccccccCcCCccccccceEEEecCCCEEEEEEecCCCCCCCCCCCCCccccCC
Q 007890 420 IALKENITS-AFD---QTPPPDGYDFKNYDIFSVAENKSYTIRNGVYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGH 495 (586)
Q Consensus 420 ~~~~~~~~~-~f~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~ 495 (586)
.+.+....+ .+. +..+|. .+ +|. .++.++.++.++.+++||++|+|.+.. ....||||||||
T Consensus 397 l~~~~~~~~~~~~~d~p~~P~~--~~-~~~--------~~~~~t~v~~~~~~~~veIVlqN~~~~---~~~~hp~HLHG~ 462 (563)
T KOG1263|consen 397 LAAYFKNIPGYFTNDFPDKPPI--KF-DYT--------GPTLGTSVMKLEFNSFVEIVLQNTSTG---TQENHPNHLHGY 462 (563)
T ss_pred hhhhhccCCccccCccCCCCcc--cc-CCc--------cccccceEEEeecCCEEEEEEeCCccc---cCCCCccceece
Confidence 877755444 221 122221 01 111 135778899999999999999998765 334799999999
Q ss_pred CeEEEeeecCCCCCCCCC-CCCCCCCCCcceeEEeCCCCEEEEEEEeCCceeeEEeecchhhhhcCceEEEeccccccc-
Q 007890 496 DFWVLGYGEGKFDIYNDP-KKYNLVNPIMKNTVPVHRYGWTALRFRADNPGAWAFHCHIESHFYMGMGVVFAEGIERLG- 573 (586)
Q Consensus 496 ~F~Vl~~g~g~~~~~~~~-~~~n~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~~~~~~~~- 573 (586)
.||||+.|.|.|++..+. ..+|+.+|+.||||.||||||++|||.|||||.|+||||+++|+..||.++|.|..++..
T Consensus 463 ~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~ 542 (563)
T KOG1263|consen 463 NFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESL 542 (563)
T ss_pred EEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccC
Confidence 999999999999985455 789999999999999999999999999999999999999999999999999988665543
Q ss_pred ----CCCCCcccCCCC
Q 007890 574 ----ELPSSIKGCVHR 585 (586)
Q Consensus 574 ----~~P~~~~~C~~~ 585 (586)
.+|.+.++||.-
T Consensus 543 ~~~~~~P~~~~~cg~~ 558 (563)
T KOG1263|consen 543 SSEYPPPKNLPKCGRA 558 (563)
T ss_pred CcCCCCCCCccccccc
Confidence 699999999964
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=3.2e-82 Score=685.50 Aligned_cols=422 Identities=29% Similarity=0.468 Sum_probs=326.4
Q ss_pred eEEEEEEEEEEeeCCCCceeEEEEECCCCCCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCcccccc
Q 007890 42 IRRYKWEVKYEYKSPDCFRKVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCP 121 (586)
Q Consensus 42 ~~~~~l~~~~~~~~~dg~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~ 121 (586)
.++|+|++++..+.++|+.+.+|+|||++|||+|++++||+|+|+|+|+ ++++|+|||||+++. +++||+|+++||+
T Consensus 45 ~~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~-l~~~tsiHwHGl~~~--~~~DGvP~vt~~~ 121 (587)
T TIGR01480 45 GTEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNT-LPEDTSIHWHGILLP--FQMDGVPGVSFAG 121 (587)
T ss_pred CceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcC-CCCCceEEcCCCcCC--ccccCCCcccccc
Confidence 3799999999999999999999999999999999999999999999999 789999999999986 6799999999999
Q ss_pred CCCCCeEEEEEEcCCCcceeeeccccccccCcceEEEEEECCCCCCCCCcccccceEEEEecccCCHHHHHhcccCCCCC
Q 007890 122 ILPGETFTYKFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPEGESEPYAYDYDRSIILNDWFHRSAFEQAAGLSSIPFQ 201 (586)
Q Consensus 122 i~pG~~~~Y~f~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~d~e~~l~l~d~~~~~~~~~~~~~~~~~~~ 201 (586)
|+||++|+|+|++.++||||||||...|+.+||+|+|||+++++ .|+.||+|++|+|+||++.+..+++..+......
T Consensus 122 I~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~--~p~~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~ 199 (587)
T TIGR01480 122 IAPGETFTYRFPVRQSGTYWYHSHSGFQEQAGLYGPLIIDPAEP--DPVRADREHVVLLSDWTDLDPAALFRKLKVMAGH 199 (587)
T ss_pred cCCCCeEEEEEECCCCeeEEEecCchhHhhccceEEEEECCCcc--ccCCCCceEEEEeeecccCCHHHHHHhhhccccc
Confidence 99999999999999999999999999999999999999987643 4678899999999999987766654332211000
Q ss_pred -----------------------------C-------------CCCCcceeecCCCCCCCCCCCCCCCccceeecCCCCC
Q 007890 202 -----------------------------W-------------VGEPQSLLIQGKGRFNCSSLNSPSLNVGIICNETNPE 239 (586)
Q Consensus 202 -----------------------------~-------------~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (586)
| .+....+|+||+...
T Consensus 200 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~~---------------------- 257 (587)
T TIGR01480 200 DNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTPA---------------------- 257 (587)
T ss_pred ccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccCC----------------------
Confidence 0 000112455555432
Q ss_pred CCceEEEEeCCcEEEEEEeecCCcceEEEEeCCCeeEEEecCCccccceEEeEEEEccCceEEEEEEeCCCCCCceEEEE
Q 007890 240 CSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHNVEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATT 319 (586)
Q Consensus 240 ~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~~ 319 (586)
..+++.+++|++|||||||+|+.+.+.|+|+||+|+||++||++++|+.++.+.|++||||||+|++++ .|.|+|++
T Consensus 258 -~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~~--~g~~~i~a 334 (587)
T TIGR01480 258 -GNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPTG--DDAFTIFA 334 (587)
T ss_pred -CCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecCC--CceEEEEE
Confidence 345789999999999999999999999999999999999999999999999999999999999999875 57899998
Q ss_pred EeecCCCCCCCCCeEEEEEecCCCCCCCCCCCCCCCCCcCCccc------------------------------------
Q 007890 320 NIVSRNATFTTPPGLAILNYYPNHPKRSPPTTPPSGPLWNDVGS------------------------------------ 363 (586)
Q Consensus 320 ~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~------------------------------------ 363 (586)
....+ ...++++|++.+......++..++......++..
T Consensus 335 ~~~~~-----~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (587)
T TIGR01480 335 QDSDR-----TGYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQ 409 (587)
T ss_pred EecCC-----CceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCcccc
Confidence 76543 2367788887643221111111100000000000
Q ss_pred ------------------------------------------cccccccccccCCCCCCCCCCCceEEEEEeeeecCCCe
Q 007890 364 ------------------------------------------RLNQSLAIKARKGFIIPPPQSADRMIVMLNTQNNVSGN 401 (586)
Q Consensus 364 ------------------------------------------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 401 (586)
.......+++..+ ...+...++.+.+.+..+. ..
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~--~~~~~~p~r~~~~~L~g~m--~~ 485 (587)
T TIGR01480 410 MAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFP--PPDGRAPGREIELHLTGNM--ER 485 (587)
T ss_pred ccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhcccccc--ccCcCCCCceEEEEEcCCC--ce
Confidence 0000000001000 1112345666766554322 35
Q ss_pred EEEEEcCccccCCCCchHHHhhhccccCCCCCCCCCCCCccccccccCcCCccccccceEEEecCCCEEEEEEecCCCCC
Q 007890 402 VRWSVNKVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRNGVYRLNFNSTVDIILQNANSLS 481 (586)
Q Consensus 402 ~~~~iNg~~~~~p~~p~l~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~ 481 (586)
+.|+|||..|.. ..| +.++.|+.|+|+|.|.+.+
T Consensus 486 ~~wtiNG~~~~~--------------------~~p-------------------------l~v~~Gervri~l~N~t~~- 519 (587)
T TIGR01480 486 FAWSFDGEAFGL--------------------KTP-------------------------LRFNYGERLRVVLVNDTMM- 519 (587)
T ss_pred eEEEECCccCCC--------------------CCc-------------------------eEecCCCEEEEEEECCCCC-
Confidence 679999986531 111 6799999999999998877
Q ss_pred CCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEeCCceeeEEeecchhhhhcCc
Q 007890 482 NKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRADNPGAWAFHCHIESHFYMGM 561 (586)
Q Consensus 482 ~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~d~GM 561 (586)
.||||||||.|+|+..+ |.+ +.++||+.|+|++++.++|++||||.|+||||++.|++.||
T Consensus 520 -----~HpmHlHG~~f~v~~~~-G~~-------------~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM 580 (587)
T TIGR01480 520 -----AHPIHLHGMWSELEDGQ-GEF-------------QVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGM 580 (587)
T ss_pred -----CcceeEcCceeeeecCC-Ccc-------------cccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcC
Confidence 99999999999998652 222 36789999999999999999999999999999999999999
Q ss_pred eEEEec
Q 007890 562 GVVFAE 567 (586)
Q Consensus 562 ~~~~~~ 567 (586)
|..|.+
T Consensus 581 ~~~~~v 586 (587)
T TIGR01480 581 FREVTV 586 (587)
T ss_pred cEEEEe
Confidence 999976
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=3.5e-76 Score=634.28 Aligned_cols=414 Identities=22% Similarity=0.283 Sum_probs=296.8
Q ss_pred eEEEEEEEEEEeeCCCCce-eEEEEECCCCCCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccc
Q 007890 42 IRRYKWEVKYEYKSPDCFR-KVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQC 120 (586)
Q Consensus 42 ~~~~~l~~~~~~~~~dg~~-~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~ 120 (586)
...|+|++.+....+++.. ..+|+|||++|||+|++++||+|+|+|+|+ ++++|+|||||+++.+ .+||+| ||
T Consensus 45 ~~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~-L~~~ttiHwHGl~~~~--~~DG~p---q~ 118 (523)
T PRK10965 45 RGRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQ-LPEETTLHWHGLEVPG--EVDGGP---QG 118 (523)
T ss_pred CccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEEC-CCCCccEEcccccCCC--ccCCCC---CC
Confidence 3468999999998886654 469999999999999999999999999999 7899999999999974 599986 89
Q ss_pred cCCCCCeEEEEEEcC-CCcceeeecc----ccccccCcceEEEEEECCCCCCC--CCccc-ccceEEEEecccCCHHHHH
Q 007890 121 PILPGETFTYKFVVD-RPGTYLYHAH----YGMQREAGLYGSIRVSLPEGESE--PYAYD-YDRSIILNDWFHRSAFEQA 192 (586)
Q Consensus 121 ~i~pG~~~~Y~f~~~-~~Gt~wYH~H----~~~q~~~Gl~G~liV~~~~~~~~--p~~~d-~e~~l~l~d~~~~~~~~~~ 192 (586)
+|.||++|+|+|+++ ++|||||||| ++.|+.+||+|+|||++++++.. |..|+ .|++|+|+||+++...++.
T Consensus 119 ~I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~ 198 (523)
T PRK10965 119 IIAPGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQID 198 (523)
T ss_pred CCCCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCcee
Confidence 999999999999995 5899999999 48999999999999999865432 33343 5899999999987665432
Q ss_pred hcccCCCCCCCCCCcceeecCCCCCCCCCCCCCCCccceeecCCCCCCCceEEEEeCCcEEEEEEeecCCcceEEEEe-C
Q 007890 193 AGLSSIPFQWVGEPQSLLIQGKGRFNCSSLNSPSLNVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQI-E 271 (586)
Q Consensus 193 ~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i-~ 271 (586)
.............++.+||||+.++ .+.++ +++|||||||+|+.+.+.|++ +
T Consensus 199 ~~~~~~~~~~g~~gd~~lVNG~~~p--------------------------~~~v~-~~~~RlRliNas~~r~~~l~~~d 251 (523)
T PRK10965 199 YQLDVMTAAVGWFGDTLLTNGAIYP--------------------------QHAAP-RGWLRLRLLNGCNARSLNLATSD 251 (523)
T ss_pred ccccccccccCccCCeEEECCcccc--------------------------eeecC-CCEEEEEEEeccCCceEEEEEcC
Confidence 2111100011235789999999876 45664 679999999999999999998 8
Q ss_pred CCeeEEEecCCccc-cceEEeEEEEccCceEEEEEEeCCCCCCceEEEEEeecCCCC-C-CCCCeEEEEEecCCCCCCCC
Q 007890 272 GHNMTVVEADGHNV-EPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNAT-F-TTPPGLAILNYYPNHPKRSP 348 (586)
Q Consensus 272 gh~~~via~DG~~~-~P~~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~~~~~~~~~~-~-~~~~~~ail~y~~~~~~~~~ 348 (586)
+|+|+|||.||+++ +|+.++.|.|+|||||||+|++++ +++|++.......... . .......++++...... .
T Consensus 252 g~~~~vIa~DG~~l~~P~~v~~l~lapGeR~dvlv~~~~--~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~ 327 (523)
T PRK10965 252 GRPLYVIASDGGLLAEPVKVSELPILMGERFEVLVDTSD--GKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLIS--A 327 (523)
T ss_pred CceEEEEEeCCCcccCccEeCeEEECccceEEEEEEcCC--CceEEEEEecccCcccccccCCCceeEEEEeccCcC--C
Confidence 99999999999987 899999999999999999999987 5789988754332110 0 01112345555532111 0
Q ss_pred CCCCCCCCCcCCccccccccccccccCCCCCCCCCCCceEEEEEeee--e--------------c---------------
Q 007890 349 PTTPPSGPLWNDVGSRLNQSLAIKARKGFIIPPPQSADRMIVMLNTQ--N--------------N--------------- 397 (586)
Q Consensus 349 ~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~--~--------------~--------------- 397 (586)
... +|.. +....+ .+.......|++.+.... . .
T Consensus 328 ~~~---~P~~------------l~~~~~-~~~~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (523)
T PRK10965 328 SGT---LPDS------------LASLPA-LPSLEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGH 391 (523)
T ss_pred CCc---CChh------------hccCCC-CCcccccceeEEEEeeccccchhhhhhcccccccccccccccccccccccc
Confidence 001 1110 000000 000000011222221100 0 0
Q ss_pred ------CC-----Ce-----EEEEEcCccccCCCCchHHHhhhccccCCCCCCCCCCCCccccccccCcCCccccccceE
Q 007890 398 ------VS-----GN-----VRWSVNKVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRNGV 461 (586)
Q Consensus 398 ------~~-----g~-----~~~~iNg~~~~~p~~p~l~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (586)
.. +. ..|+|||++|.. .. | .
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~-------------------~~-~------------------------~ 427 (523)
T PRK10965 392 GNMDHMNHGAADAGPAFDFHHANKINGKAFDM-------------------NK-P------------------------M 427 (523)
T ss_pred ccccccccccccccccccccccccCCCeECCC-------------------CC-c------------------------c
Confidence 00 00 114566665421 11 1 1
Q ss_pred EEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEe
Q 007890 462 YRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRA 541 (586)
Q Consensus 462 ~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~a 541 (586)
+.++.|++++|+|.|.+.+ +.|||||||++|||++++..+. ....+.|||||.|++ +.+.|++++
T Consensus 428 ~~~~~G~~e~w~i~N~~~~-----~~Hp~HlHg~~F~Vl~~~g~~~---------~~~~~~wkDTv~v~~-~~~~i~~~f 492 (523)
T PRK10965 428 FAAKKGQYERWVISGVGDM-----MLHPFHIHGTQFRILSENGKPP---------AAHRAGWKDTVRVEG-GRSEVLVKF 492 (523)
T ss_pred eecCCCCEEEEEEEeCCCC-----CccCeEEeCcEEEEEEecCCCC---------CccccccccEEEECC-cEEEEEEEe
Confidence 6789999999999998752 2799999999999999953221 123468999999988 666655544
Q ss_pred ----CCceeeEEeecchhhhhcCceEEEec
Q 007890 542 ----DNPGAWAFHCHIESHFYMGMGVVFAE 567 (586)
Q Consensus 542 ----dnpG~w~~HCHil~H~d~GM~~~~~~ 567 (586)
+++|.||||||||+|||.|||..|.+
T Consensus 493 ~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V 522 (523)
T PRK10965 493 DHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 522 (523)
T ss_pred cCCCCCCCCEEEEeCchhhhccCccceeEe
Confidence 57789999999999999999999976
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=1.9e-74 Score=615.85 Aligned_cols=400 Identities=18% Similarity=0.151 Sum_probs=291.8
Q ss_pred EEEEEEEEEeeCCC-CceeEEEEECCCCCCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccC
Q 007890 44 RYKWEVKYEYKSPD-CFRKVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPI 122 (586)
Q Consensus 44 ~~~l~~~~~~~~~d-g~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i 122 (586)
.++|++.......+ |..+.+|+|||++|||+||+++||+|+|+|+|+ ++++|+|||||+++++. .+||++ ++|
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~-L~~~ttiHwHGl~~~~~-~~~g~~----~~I 120 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNR-LTEPVSMTVSGLQVPGP-LMGGPA----RMM 120 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeC-CCCCCceeECCccCCCC-CCCCcc----ccC
Confidence 37888888887776 467899999999999999999999999999999 79999999999999764 567764 689
Q ss_pred CCCCeEEEEEEc-CCCcceeeecc----ccccccCcceEEEEEECCCCCCCC--Cccc-ccceEEEEecccCCHHHHHhc
Q 007890 123 LPGETFTYKFVV-DRPGTYLYHAH----YGMQREAGLYGSIRVSLPEGESEP--YAYD-YDRSIILNDWFHRSAFEQAAG 194 (586)
Q Consensus 123 ~pG~~~~Y~f~~-~~~Gt~wYH~H----~~~q~~~Gl~G~liV~~~~~~~~p--~~~d-~e~~l~l~d~~~~~~~~~~~~ 194 (586)
+||++|+|+|++ +++|||||||| +..|+.+||+|+|||+++.++..+ ..|+ .|++|+|+||+++........
T Consensus 121 ~PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~~ 200 (471)
T PRK10883 121 SPNADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYN 200 (471)
T ss_pred CCCCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCcccc
Confidence 999999999998 46999999999 456999999999999998654333 3444 489999999998765432211
Q ss_pred ccCCCCCCCCCCcceeecCCCCCCCCCCCCCCCccceeecCCCCCCCceEEEEeCCcEEEEEEeecCCcceEEEEe-CCC
Q 007890 195 LSSIPFQWVGEPQSLLIQGKGRFNCSSLNSPSLNVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQI-EGH 273 (586)
Q Consensus 195 ~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i-~gh 273 (586)
....+ ...++.+||||+..+ .++|++| +|||||||+|+.+.+.|+| ++|
T Consensus 201 ~~~~~---g~~gd~~lvNG~~~p--------------------------~~~v~~~-~~RlRliNas~~~~~~l~l~d~~ 250 (471)
T PRK10883 201 EPGSG---GFVGDTLLVNGVQSP--------------------------YVEVSRG-WVRLRLLNASNARRYQLQMSDGR 250 (471)
T ss_pred ccccC---CccCCeeEECCccCC--------------------------eEEecCC-EEEEEEEEccCCceEEEEEcCCC
Confidence 11111 236789999999876 6889875 7999999999999999999 899
Q ss_pred eeEEEecCCccc-cceEEeEEEEccCceEEEEEEeCCCCCCceEEEEEeecCCCC-----CCCC---CeEEEEEecCCCC
Q 007890 274 NMTVVEADGHNV-EPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNAT-----FTTP---PGLAILNYYPNHP 344 (586)
Q Consensus 274 ~~~via~DG~~~-~P~~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~~~~~~~~~~-----~~~~---~~~ail~y~~~~~ 344 (586)
+|+|||.||+++ +|+.++.+.|+|||||||+|++++ ++.+.+.+........ +... ....+++......
T Consensus 251 ~~~vIa~DGg~~~~P~~~~~l~l~pGeR~dvlVd~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (471)
T PRK10883 251 PLHVIAGDQGFLPAPVSVKQLSLAPGERREILVDMSN--GDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGL 328 (471)
T ss_pred eEEEEEeCCCcccCCcEeCeEEECCCCeEEEEEECCC--CceEEEECCCccccccccccccCCccccccceeEEEEcccc
Confidence 999999998776 899999999999999999999976 4566666532111000 0000 0112333321100
Q ss_pred CCCCCCCCCCCCCcCCccccccccccccccCCCCCCCCCCCceEEEEEeeeecCCCeEEEEEcCccccCCCCchHHHhhh
Q 007890 345 KRSPPTTPPSGPLWNDVGSRLNQSLAIKARKGFIIPPPQSADRMIVMLNTQNNVSGNVRWSVNKVTYTLPHIPYLIALKE 424 (586)
Q Consensus 345 ~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~iNg~~~~~p~~p~l~~~~~ 424 (586)
...... ..|. .+... ...+....+++.+... + ..|.|||++|...
T Consensus 329 ~~~~~~---~~p~------------~l~~~----~~~~~~~~~~~~~~l~-----~-~~~~INg~~~~~~---------- 373 (471)
T PRK10883 329 LPLVTD---NLPM------------RLLPD----EIMEGSPIRSREISLG-----D-DLPGINGALWDMN---------- 373 (471)
T ss_pred ccCCCC---cCCh------------hhcCC----CCCCCCCcceEEEEec-----C-CcCccCCcccCCC----------
Confidence 000000 0000 01110 0111122334433332 1 1478999876421
Q ss_pred ccccCCCCCCCCCCCCccccccccCcCCccccccceEEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeec
Q 007890 425 NITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRNGVYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGE 504 (586)
Q Consensus 425 ~~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~ 504 (586)
..+ +.++.|++|+|+|.|. + .||||||||.|||++++.
T Consensus 374 ---------~~~-------------------------~~~~~g~~e~W~~~n~--~------~HP~HlHg~~FqVl~~~G 411 (471)
T PRK10883 374 ---------RID-------------------------VTAQQGTWERWTVRAD--M------PQAFHIEGVMFLIRNVNG 411 (471)
T ss_pred ---------cce-------------------------eecCCCCEEEEEEECC--C------CcCEeECCccEEEEEecC
Confidence 111 6789999999999884 4 799999999999999954
Q ss_pred CCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEeCCce----eeEEeecchhhhhcCceEEEeccc
Q 007890 505 GKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRADNPG----AWAFHCHIESHFYMGMGVVFAEGI 569 (586)
Q Consensus 505 g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~adnpG----~w~~HCHil~H~d~GM~~~~~~~~ 569 (586)
.... ..+..|||||.|+ +.+.|+++++++| .||||||||+|||.|||..|.+.+
T Consensus 412 ~~~~---------~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 412 AMPF---------PEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred CCCC---------ccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEec
Confidence 3211 1234799999996 4699999999877 899999999999999999998854
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.4e-61 Score=513.73 Aligned_cols=403 Identities=27% Similarity=0.395 Sum_probs=292.0
Q ss_pred CCCceeEEEEECCCCCCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccCCCCCeEEEEEEcC
Q 007890 56 PDCFRKVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVD 135 (586)
Q Consensus 56 ~dg~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~~ 135 (586)
.++.....|.+||++|||+|++++||+|+|+++|+| .++|++||||+..+ +.+||++..+|+++.||++++|.|+.+
T Consensus 47 ~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l-~~~t~vh~HG~~~p--~~~dG~~~~~~~~~~~~~~~~y~f~~~ 123 (451)
T COG2132 47 APGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRL-LVDTSVHWHGLPVP--GEMDGVPPLTQIPPGPGETPTYTFTQD 123 (451)
T ss_pred ecCCCceeEEecccccCceEEEecCCEEEEEEEeCC-CCCceEEEcCcccC--ccccCCCcccccCCCCCCcEEEeecCC
Confidence 456778899999999999999999999999999995 44499999998776 689999999999999999999999998
Q ss_pred CCcceeeeccccccccCcceEEEEEECCCCCCCCCcccccceEEEEecccCCHHHHHhcccCCCCCCCCCCcceeecCCC
Q 007890 136 RPGTYLYHAHYGMQREAGLYGSIRVSLPEGESEPYAYDYDRSIILNDWFHRSAFEQAAGLSSIPFQWVGEPQSLLIQGKG 215 (586)
Q Consensus 136 ~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~d~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~ 215 (586)
++||||||+|...|+.+||+|++||+++.+ .+..+|.+.++++.+|................ ....+..+|||+.
T Consensus 124 ~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~--~~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~vnG~~ 198 (451)
T COG2132 124 VPGTYWYHPHTHGQVYDGLAGALIIEDENS--EPLGVDDEPVILQDDWLDEDGTDLYQEGPAMG---GFPGDTLLVNGAI 198 (451)
T ss_pred CCcceEeccCCCchhhcccceeEEEeCCCC--CCCCCCceEEEEEeeeecCCCCccccCCcccc---CCCCCeEEECCCc
Confidence 888999999988899999999999999854 45678888888888887665443322211111 3467889999966
Q ss_pred CCCCCCCCCCCCccceeecCCCCCCCceEEEEeCCcEEEEEEeecCCcceEEEEeCCCeeEEEecCCccccceEEeEEEE
Q 007890 216 RFNCSSLNSPSLNVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHNVEPFVVQNLFI 295 (586)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l 295 (586)
.+ +...++++|||||+|+++.+.+.+++.+++|+||++||.+++|..++.+.|
T Consensus 199 ~p---------------------------~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l 251 (451)
T COG2132 199 LP---------------------------FKAVPGGVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYL 251 (451)
T ss_pred cc---------------------------eeecCCCeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEe
Confidence 65 334456679999999998888999999999999999999998899999999
Q ss_pred ccCceEEEEEEeCCCCCCceEEEEEeecCCCCCCCCCeEEEEEecCCCCCC-CCCCCCCCCCCcCCcccccccccccccc
Q 007890 296 YSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNYYPNHPKR-SPPTTPPSGPLWNDVGSRLNQSLAIKAR 374 (586)
Q Consensus 296 ~pGqR~dVlv~~~~~~~g~y~l~~~~~~~~~~~~~~~~~ail~y~~~~~~~-~~~~~~p~~p~~~~~~~~~~~~~~~~~~ 374 (586)
+|||||||++++++ ++.+.+.+.... .. ....+........... .........+..+. ...........
T Consensus 252 ~p~er~~v~v~~~~--~~~~~l~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~ 321 (451)
T COG2132 252 APGERYEVLVDMND--GGAVTLTALGED-MP----DTLKGFRAPNPILTPSYPVLNGRVGAPTGDM---ADHAPVGLLVT 321 (451)
T ss_pred cCcceEEEEEEcCC--CCeEEEEecccc-CC----ceeeeeeccccccccccccccccccCCCcch---hhccccccchh
Confidence 99999999999987 567777765511 11 1111222111100000 00000000011000 00000000000
Q ss_pred CCCCCCCCCCCceEEEEEeeeecCCCeEEEEEcCccccCCCCchHHHhhhccccCCCCCCCCCCCCccccccccCcCCcc
Q 007890 375 KGFIIPPPQSADRMIVMLNTQNNVSGNVRWSVNKVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKS 454 (586)
Q Consensus 375 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~iNg~~~~~p~~p~l~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~~~ 454 (586)
. ...+....++...+... .+...|.+|+..|.. ...
T Consensus 322 ~--~~~~~~~~~~~~~l~~~----~~~~~~~~n~~~~~~-------------------~~~------------------- 357 (451)
T COG2132 322 I--LVEPGPNRDTDFHLIGG----IGGYVWAINGKAFDD-------------------NRV------------------- 357 (451)
T ss_pred h--cCCCcccccccchhhcc----cccccccccCccCCC-------------------CcC-------------------
Confidence 0 00000011122221111 123457777765431 011
Q ss_pred ccccceEEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCE
Q 007890 455 YTIRNGVYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGW 534 (586)
Q Consensus 455 ~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~ 534 (586)
.+.++.|++++|+|.|.+.+ .|||||||+.|+|++.+ .. .....+.||||+.+.++..
T Consensus 358 ------~~~~~~G~~~~~~i~n~~~~------~HP~HlHg~~F~v~~~~-~~---------~~~~~~~~kDTv~v~~~~~ 415 (451)
T COG2132 358 ------TLIAKAGTRERWVLTNDTPM------PHPFHLHGHFFQVLSGD-AP---------APGAAPGWKDTVLVAPGER 415 (451)
T ss_pred ------ceeecCCCEEEEEEECCCCC------ccCeEEcCceEEEEecC-CC---------cccccCccceEEEeCCCeE
Confidence 17889999999999998877 99999999999999986 11 1124579999999999999
Q ss_pred EEEEEEeCCceeeEEeecchhhhhcCceEEEeccc
Q 007890 535 TALRFRADNPGAWAFHCHIESHFYMGMGVVFAEGI 569 (586)
Q Consensus 535 v~irf~adnpG~w~~HCHil~H~d~GM~~~~~~~~ 569 (586)
++|+|++++||.|+||||+++|++.|||..+.+..
T Consensus 416 ~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~~ 450 (451)
T COG2132 416 LLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVVP 450 (451)
T ss_pred EEEEEeCCCCCceEEeccchhHhhcCCeeEEEecC
Confidence 99999999999999999999999999999997753
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=2.7e-48 Score=393.65 Aligned_cols=269 Identities=20% Similarity=0.220 Sum_probs=220.5
Q ss_pred ccccceEEEEEEEEEEeeC-CCCceeEEEEECCCCCCCcEEeecCCEEEEEEEeCCCC-CCeeEEecceeeccCCCCCCC
Q 007890 37 MAEARIRRYKWEVKYEYKS-PDCFRKVVITINGRTPGPTIQARQNDTVIVELKNSLLT-ENVAIHWHGIRQIGTPWADGT 114 (586)
Q Consensus 37 ~~~~~~~~~~l~~~~~~~~-~dg~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~-~~~siH~HGl~~~~~~~~DGv 114 (586)
.+.+.+++|+|++++..+. .+|..+.+|+|||++|||+|++++||+|+|+|+|++.. .++++||||. .++||+
T Consensus 22 ~~~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~-----~~~dg~ 96 (311)
T TIGR02376 22 RSGPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAA-----TGALGG 96 (311)
T ss_pred cCCCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCC-----CccCCC
Confidence 4677899999999999887 58999999999999999999999999999999999532 5899999996 257998
Q ss_pred CccccccCCCCCeEEEEEEcCCCcceeeecc----ccccccCcceEEEEEECCCCCCCCCcccccceEEEEecccCCHHH
Q 007890 115 EGVTQCPILPGETFTYKFVVDRPGTYLYHAH----YGMQREAGLYGSIRVSLPEGESEPYAYDYDRSIILNDWFHRSAFE 190 (586)
Q Consensus 115 ~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H----~~~q~~~Gl~G~liV~~~~~~~~p~~~d~e~~l~l~d~~~~~~~~ 190 (586)
+.++| |.||++++|+|.++++|||||||| +..|+..||+|+|||++++. .+ .+|+|++|+++||+++....
T Consensus 97 ~~~~~--I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~--~~-~~d~e~~l~l~d~~~~~~~~ 171 (311)
T TIGR02376 97 AALTQ--VNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREG--LP-EYDKEYYIGESDLYTPKDEG 171 (311)
T ss_pred Cccee--ECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCC--Cc-CcceeEEEeeeeEecccccc
Confidence 88776 999999999999999999999999 46799999999999998743 22 56899999999999875433
Q ss_pred HHhcccCCCC-CCCCCCcceeecCCCCCCCCCCCCCCCccceeecCCCCCCCceEEEEeCCcEEEEEEeecCCcceEEEE
Q 007890 191 QAAGLSSIPF-QWVGEPQSLLIQGKGRFNCSSLNSPSLNVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQ 269 (586)
Q Consensus 191 ~~~~~~~~~~-~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~ 269 (586)
....+..... .....++.++|||+..+. .+.+++++|+++||||||++..+.+.|+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~iNG~~~~~-----------------------~~~~~v~~G~~~RlRiiNa~~~~~~~~~ 228 (311)
T TIGR02376 172 EGGAYEDDVAAMRTLTPTHVVFNGAVGAL-----------------------TGDNALTAGVGERVLFVHSQPNRDSRPH 228 (311)
T ss_pred ccccccchHHHHhcCCCCEEEECCccCCC-----------------------CCCcccccCCcEEEEEEcCCCCCCCCCe
Confidence 1111110000 012467899999996541 1146899999999999999998899999
Q ss_pred eCCCeeEEEecCCccccce--EEeEEEEccCceEEEEEEeCCCCCCceEEEEEeecCCCCCCCCCeEEEEEecCCC
Q 007890 270 IEGHNMTVVEADGHNVEPF--VVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNATFTTPPGLAILNYYPNH 343 (586)
Q Consensus 270 i~gh~~~via~DG~~~~P~--~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~~~~~~~~~~~~~~~~~ail~y~~~~ 343 (586)
++++.+++|+.||.++.|. .++++.|+||||+||+|++++ +|.|++++....... .....++|+|++..
T Consensus 229 ~~g~~~~~v~~DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~--pG~y~~~~~~~~~~~---~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 229 LIGGHGDYVWVTGKFANPPNRDVETWFIPGGSAAAALYTFEQ--PGVYAYVDHNLIEAF---EKGAAAQVKVEGAW 299 (311)
T ss_pred EecCCceEEEECCcccCCCCCCcceEEECCCceEEEEEEeCC--CeEEEEECcHHHHHH---hCCCEEEEEECCCC
Confidence 9999999999999999764 489999999999999999997 699999987654321 33578999998543
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=6.3e-36 Score=259.09 Aligned_cols=115 Identities=50% Similarity=0.895 Sum_probs=107.5
Q ss_pred EEEEEeeCCCCceeEEEEECCCCCCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccCCCCCe
Q 007890 48 EVKYEYKSPDCFRKVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGET 127 (586)
Q Consensus 48 ~~~~~~~~~dg~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~ 127 (586)
++++..+.++|..+++|+|||++|||+|++++||+|+|+|+|+ ++++++|||||+++...+|+||+++++||+|.||++
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~-l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~ 79 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNN-LDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGES 79 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEE-SSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEec-cccccccccceeeeeeeeecCCcccccceeEEeecc
Confidence 3677888999988999999999999999999999999999999 699999999999999888999999999999999999
Q ss_pred EEEEEEcCC-CcceeeeccccccccCcceEEEEEECC
Q 007890 128 FTYKFVVDR-PGTYLYHAHYGMQREAGLYGSIRVSLP 163 (586)
Q Consensus 128 ~~Y~f~~~~-~Gt~wYH~H~~~q~~~Gl~G~liV~~~ 163 (586)
++|+|++.+ +||||||||...|..+||+|+|||+++
T Consensus 80 ~~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 80 FTYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EEEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eeeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 999999966 999999999877888999999999986
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96 E-value=5.2e-30 Score=231.25 Aligned_cols=108 Identities=46% Similarity=0.786 Sum_probs=95.8
Q ss_pred cccceEEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEE
Q 007890 456 TIRNGVYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWT 535 (586)
Q Consensus 456 ~~~~~~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v 535 (586)
..+..++.++.|++|||+|+|.+.+ .|||||||++|+|++++.+.+... ....+++.+|.||||+.|++++++
T Consensus 30 ~~~~~~~~~~~g~~v~~~l~N~~~~------~Hp~HlHG~~F~vl~~~~~~~~~~-~~~~~~~~~~~~~DTv~v~~~~~~ 102 (138)
T PF07731_consen 30 FGNTPVIEVKNGDVVEIVLQNNGSM------PHPFHLHGHSFQVLGRGGGPWNPD-DTQSYNPENPGWRDTVLVPPGGWV 102 (138)
T ss_dssp SSTTSEEEEETTSEEEEEEEECTTS------SEEEEETTSEEEEEEETTEESTTH-CGGCCCSSSSSEESEEEEETTEEE
T ss_pred CCCcceEEEeCCCEEEEEEECCCCC------ccceEEEeeEEEeeecCCcccccc-cccccccccCcccccccccceeEE
Confidence 3455679999999999999998876 999999999999999987665433 456678899999999999999999
Q ss_pred EEEEEeCCceeeEEeecchhhhhcCceEEEecccc
Q 007890 536 ALRFRADNPGAWAFHCHIESHFYMGMGVVFAEGIE 570 (586)
Q Consensus 536 ~irf~adnpG~w~~HCHil~H~d~GM~~~~~~~~~ 570 (586)
+|||++||||.|+|||||++|++.|||++|.|.++
T Consensus 103 ~i~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~~ 137 (138)
T PF07731_consen 103 VIRFRADNPGPWLFHCHILEHEDNGMMAVFVVGPQ 137 (138)
T ss_dssp EEEEEETSTEEEEEEESSHHHHHTT-EEEEEECHH
T ss_pred EEEEEeecceEEEEEEchHHHHhCCCeEEEEEcCC
Confidence 99999999999999999999999999999999764
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.95 E-value=1.3e-27 Score=220.30 Aligned_cols=154 Identities=38% Similarity=0.649 Sum_probs=125.2
Q ss_pred ccceEEEEecccCCHHHHHhcccCCC---CCCCCCCcceeecCCCCCCCCCCCCCCCccceeecCCCCCCCceEEEEeCC
Q 007890 174 YDRSIILNDWFHRSAFEQAAGLSSIP---FQWVGEPQSLLIQGKGRFNCSSLNSPSLNVGIICNETNPECSPYVITVIPG 250 (586)
Q Consensus 174 ~e~~l~l~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G 250 (586)
+|++|+++||+++....+...+...+ ..+++.+++++|||++..+|.... ......+.+.+++|
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~-------------~~~~~~~~~~v~~g 67 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGRFDCSSAD-------------YTGGEPPVIKVKPG 67 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTCBTTCTTG-------------STTSTSGEEEEETT
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCcccccccccc-------------ccccccceEEEcCC
Confidence 48999999999998877766555442 124678999999999999876411 12335679999999
Q ss_pred cEEEEEEeecCCcceEEEEeCCCeeEEEecCCccccceEEeEEEEccCceEEEEEEeCCCCCCceEEEEEeecCCC-CCC
Q 007890 251 KTYRLRISSLTALSALSFQIEGHNMTVVEADGHNVEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSRNA-TFT 329 (586)
Q Consensus 251 ~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~~~~~~~~~-~~~ 329 (586)
++|||||||+|+...+.|+|+||+|+|||+||.+++|+.+++|.|++||||||+|++++ ++|+|||++.....+. ...
T Consensus 68 ~~~rlRliNa~~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~-~~g~y~i~~~~~~~~~~~~~ 146 (159)
T PF00394_consen 68 ERYRLRLINAGASTSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQ-PPGNYWIRASYQHDSINDPQ 146 (159)
T ss_dssp TEEEEEEEEESSS-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECS-CSSEEEEEEEESSSSSHSHG
T ss_pred cEEEEEEEeccCCeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCC-CCCeEEEEEecccCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999988 6899999997432221 124
Q ss_pred CCCeEEEEEecC
Q 007890 330 TPPGLAILNYYP 341 (586)
Q Consensus 330 ~~~~~ail~y~~ 341 (586)
...+.|||+|++
T Consensus 147 ~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 147 NGNALAILRYDG 158 (159)
T ss_dssp GGTTEEEEEETT
T ss_pred CcEEEEEEEECC
Confidence 567899999984
No 21
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.78 E-value=1.1e-18 Score=156.83 Aligned_cols=105 Identities=26% Similarity=0.270 Sum_probs=81.4
Q ss_pred CCCceeEEEEECCCCCCCcEEeecCCEEEEEEEeCCC--CCCeeEEecceeeccCCCCCCCCccccccCCCC---C-e--
Q 007890 56 PDCFRKVVITINGRTPGPTIQARQNDTVIVELKNSLL--TENVAIHWHGIRQIGTPWADGTEGVTQCPILPG---E-T-- 127 (586)
Q Consensus 56 ~dg~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~--~~~~siH~HGl~~~~~~~~DGv~~~~q~~i~pG---~-~-- 127 (586)
..++...-+.++| .++|+|++++||+|+|+|+|.+. .....||+||...+..+.+||++.++||+|.|+ + .
T Consensus 36 ~~~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~ 114 (148)
T TIGR03095 36 MPGPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGY 114 (148)
T ss_pred CCCCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccce
Confidence 4566777888888 57999999999999999999943 223455555544333345899999999999884 1 1
Q ss_pred EEEEEEcCCCcceeeeccccccccCcceEEEEEE
Q 007890 128 FTYKFVVDRPGTYLYHAHYGMQREAGLYGSIRVS 161 (586)
Q Consensus 128 ~~Y~f~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 161 (586)
.++.|++.++||||||||...|+.+||+|.|||+
T Consensus 115 ~~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 115 TDFTYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred eEEEEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 3445555799999999999999999999999995
No 22
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.67 E-value=1.2e-14 Score=147.91 Aligned_cols=234 Identities=13% Similarity=0.024 Sum_probs=143.6
Q ss_pred eEEEEeCCcEEEEEEeecCCc-ceEEEEeCCCeeEEEecCCccccceEEeEEEEccCceEEEEEEeCCCCCCceEEEEEe
Q 007890 243 YVITVIPGKTYRLRISSLTAL-SALSFQIEGHNMTVVEADGHNVEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNI 321 (586)
Q Consensus 243 ~~~~v~~G~~~rlRliN~g~~-~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~~~~ 321 (586)
+++++++|+++++++.|.... ..+.++++++. +.||... ...|.||+++.+.+++++ +|+||.+++.
T Consensus 59 P~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t~ty~F~~~~--~Gty~YH~H~ 126 (311)
T TIGR02376 59 PLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGETATLRFKATR--PGAFVYHCAP 126 (311)
T ss_pred ceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCeEEEEEEcCC--CEEEEEEcCC
Confidence 489999999999999998632 46888998874 4677531 223899999999999876 7999999875
Q ss_pred ecCCCCCCCCCeEEEEEecCCCCCCCCCCCCCCCCCcCCccccccccccccccCCCCCCCCCCCceEEEEEeeeecCCCe
Q 007890 322 VSRNATFTTPPGLAILNYYPNHPKRSPPTTPPSGPLWNDVGSRLNQSLAIKARKGFIIPPPQSADRMIVMLNTQNNVSGN 401 (586)
Q Consensus 322 ~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 401 (586)
......-......+.|.+.+... .+..+ .++...+.+... ......................
T Consensus 127 ~~~~~~q~~~Gl~G~liV~~~~~----------~~~~d-----~e~~l~l~d~~~---~~~~~~~~~~~~~~~~~~~~~~ 188 (311)
T TIGR02376 127 PGMVPWHVVSGMNGAIMVLPREG----------LPEYD-----KEYYIGESDLYT---PKDEGEGGAYEDDVAAMRTLTP 188 (311)
T ss_pred CCchhHHhhcCcceEEEeeccCC----------CcCcc-----eeEEEeeeeEec---cccccccccccchHHHHhcCCC
Confidence 32110001112344455542110 00100 011111111100 0000000000000000000011
Q ss_pred EEEEEcCccccCCCCchHHHhhhccccCCCCCCCCCCCCccccccccCcCCccccccceEEEecCCCEEEEEEecCCCCC
Q 007890 402 VRWSVNKVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRNGVYRLNFNSTVDIILQNANSLS 481 (586)
Q Consensus 402 ~~~~iNg~~~~~p~~p~l~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~ 481 (586)
..+.|||+.... .| ...++.|++++|.|.|.+..
T Consensus 189 ~~~~iNG~~~~~---------------------~~------------------------~~~v~~G~~~RlRiiNa~~~- 222 (311)
T TIGR02376 189 THVVFNGAVGAL---------------------TG------------------------DNALTAGVGERVLFVHSQPN- 222 (311)
T ss_pred CEEEECCccCCC---------------------CC------------------------CcccccCCcEEEEEEcCCCC-
Confidence 245666653210 01 15678999999999998653
Q ss_pred CCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCC-cceeEEeCCCCEEEEEEEeCCceeeEEeecchhhh-hc
Q 007890 482 NKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPI-MKNTVPVHRYGWTALRFRADNPGAWAFHCHIESHF-YM 559 (586)
Q Consensus 482 ~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~-~rDTv~vpp~g~v~irf~adnpG~w~~HCHil~H~-d~ 559 (586)
..+.||++|++|+++... |.+- ..+. ..||+.|.||+...|.|+++.||.|++|||...|+ ..
T Consensus 223 ----~~~~~~~~g~~~~~v~~D-G~~~----------~~~~~~~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~~~ 287 (311)
T TIGR02376 223 ----RDSRPHLIGGHGDYVWVT-GKFA----------NPPNRDVETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAFEK 287 (311)
T ss_pred ----CCCCCeEecCCceEEEEC-Cccc----------CCCCCCcceEEECCCceEEEEEEeCCCeEEEEECcHHHHHHhC
Confidence 268999999999999883 4321 1122 36999999999999999999999999999999998 77
Q ss_pred CceEEEec
Q 007890 560 GMGVVFAE 567 (586)
Q Consensus 560 GM~~~~~~ 567 (586)
||++++.+
T Consensus 288 g~~~~i~~ 295 (311)
T TIGR02376 288 GAAAQVKV 295 (311)
T ss_pred CCEEEEEE
Confidence 99999965
No 23
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.66 E-value=3.1e-16 Score=171.21 Aligned_cols=101 Identities=22% Similarity=0.372 Sum_probs=86.3
Q ss_pred ceeEEEEECCCCCCC--cEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCcc--ccccCCCCCeEEEEEEc
Q 007890 59 FRKVVITINGRTPGP--TIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGV--TQCPILPGETFTYKFVV 134 (586)
Q Consensus 59 ~~~~~~~~Ng~~pgP--~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~--~q~~i~pG~~~~Y~f~~ 134 (586)
..+.+|+|||+.+++ .|++++||+|+|+|.|. +..+++|||||+.... ...||.... ....|.||++++|+|.+
T Consensus 483 m~~~~wtiNG~~~~~~~pl~v~~Gervri~l~N~-t~~~HpmHlHG~~f~v-~~~~G~~~~~~dTv~V~Pg~t~~~~f~a 560 (587)
T TIGR01480 483 MERFAWSFDGEAFGLKTPLRFNYGERLRVVLVND-TMMAHPIHLHGMWSEL-EDGQGEFQVRKHTVDVPPGGKRSFRVTA 560 (587)
T ss_pred CceeEEEECCccCCCCCceEecCCCEEEEEEECC-CCCCcceeEcCceeee-ecCCCcccccCCceeeCCCCEEEEEEEC
Confidence 468899999998884 79999999999999999 8999999999997643 223553211 23789999999999999
Q ss_pred CCCcceeeeccccccccCcceEEEEEE
Q 007890 135 DRPGTYLYHAHYGMQREAGLYGSIRVS 161 (586)
Q Consensus 135 ~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 161 (586)
+++|+||||||...|...||++.+.|.
T Consensus 561 d~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 561 DALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred CCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 999999999999999999999999873
No 24
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.43 E-value=1.1e-12 Score=113.79 Aligned_cols=95 Identities=19% Similarity=0.190 Sum_probs=76.2
Q ss_pred ccccccceEEEEEEEE--EEee---CCCCceeEEE-EECCCCCCCcEEeecCCEEEEEEEeCCCCCCe--eEEecceeec
Q 007890 35 VPMAEARIRRYKWEVK--YEYK---SPDCFRKVVI-TINGRTPGPTIQARQNDTVIVELKNSLLTENV--AIHWHGIRQI 106 (586)
Q Consensus 35 ~~~~~~~~~~~~l~~~--~~~~---~~dg~~~~~~-~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~--siH~HGl~~~ 106 (586)
...+.+..++|+++|+ ...+ +-.|.....+ ++|+++..+.|+|++||+|+++++|. .+.++ .+++||.
T Consensus 17 ~~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~-d~~~H~f~i~~~gi--- 92 (135)
T TIGR03096 17 MGTAQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENK-SPISEGFSIDAYGI--- 92 (135)
T ss_pred ccchhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeC-CCCccceEECCCCc---
Confidence 4457788899999999 4333 3567777777 99999999999999999999999998 55443 3333322
Q ss_pred cCCCCCCCCccccccCCCCCeEEEEEEcCCCcceeeecc
Q 007890 107 GTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAH 145 (586)
Q Consensus 107 ~~~~~DGv~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H 145 (586)
+..|+||++.+|+|+++++|+|||||-
T Consensus 93 ------------s~~I~pGet~TitF~adKpG~Y~y~C~ 119 (135)
T TIGR03096 93 ------------SEVIKAGETKTISFKADKAGAFTIWCQ 119 (135)
T ss_pred ------------ceEECCCCeEEEEEECCCCEEEEEeCC
Confidence 246899999999999999999999996
No 25
>PRK10965 multicopper oxidase; Provisional
Probab=99.15 E-value=6.6e-09 Score=113.06 Aligned_cols=236 Identities=16% Similarity=0.141 Sum_probs=141.6
Q ss_pred eEEEEECCCCCCCcEEeecCCEEEEEEEeCCCCCCeeEEe---cceeeccCCCCCCCCc-----cccccCCCCCeEEEEE
Q 007890 61 KVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHW---HGIRQIGTPWADGTEG-----VTQCPILPGETFTYKF 132 (586)
Q Consensus 61 ~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~---HGl~~~~~~~~DGv~~-----~~q~~i~pG~~~~Y~f 132 (586)
...+++||+. .|.+.++ |.++++|+.|.-......+.+ |-+++. ..||.+- +....|.||++++..+
T Consensus 212 gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vI---a~DG~~l~~P~~v~~l~lapGeR~dvlv 286 (523)
T PRK10965 212 GDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVI---ASDGGLLAEPVKVSELPILMGERFEVLV 286 (523)
T ss_pred CCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEE---EeCCCcccCccEeCeEEECccceEEEEE
Confidence 3568999995 8888885 569999999993334556665 334554 3688542 2457799999999999
Q ss_pred EcCCCcceeeeccccccccCc------ceEEEEEEC--CCC-CCCCCc------c-c------ccceEEEEeccc-----
Q 007890 133 VVDRPGTYLYHAHYGMQREAG------LYGSIRVSL--PEG-ESEPYA------Y-D------YDRSIILNDWFH----- 185 (586)
Q Consensus 133 ~~~~~Gt~wYH~H~~~q~~~G------l~G~liV~~--~~~-~~~p~~------~-d------~e~~l~l~d~~~----- 185 (586)
++.+.|.++...-...+...+ -+-.+.|.. ... ...|.. . . +.+.+.+..+..
T Consensus 287 ~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m~ 366 (523)
T PRK10965 287 DTSDGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMMGMQ 366 (523)
T ss_pred EcCCCceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccchhhhh
Confidence 987778887766421111100 111223331 111 011100 0 0 112222211100
Q ss_pred ----CCHHHHHhccc------C--CC----CC-----CCC---CCcceeecCCCCCCCCCCCCCCCccceeecCCCCCCC
Q 007890 186 ----RSAFEQAAGLS------S--IP----FQ-----WVG---EPQSLLIQGKGRFNCSSLNSPSLNVGIICNETNPECS 241 (586)
Q Consensus 186 ----~~~~~~~~~~~------~--~~----~~-----~~~---~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (586)
.........+. . .+ .. ... ....++|||+.+. . .
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~---~-------------------~ 424 (523)
T PRK10965 367 MLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFD---M-------------------N 424 (523)
T ss_pred hccccccccccccccccccccccccccccccccccccccccccccccccCCCeECC---C-------------------C
Confidence 00000000000 0 00 00 000 0112489999875 0 1
Q ss_pred ceEEEEeCCcEEEEEEeecCCcceEEEEeCCCeeEEEecCCcccc---ceEEeEEEEccCceEEEEEEeCC--CCCCceE
Q 007890 242 PYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHNVE---PFVVQNLFIYSGETYSVLIKADQ--NPTRNYW 316 (586)
Q Consensus 242 ~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~---P~~~~~l~l~pGqR~dVlv~~~~--~~~g~y~ 316 (586)
.+.++++.|++.+|+|+|.+....|.|||||+.|+|++.||.+.. +...|+|.|.+ ++.+++++++. +..|.|.
T Consensus 425 ~~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~ 503 (523)
T PRK10965 425 KPMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYM 503 (523)
T ss_pred CcceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEE
Confidence 235789999999999999987567999999999999999999775 35689999976 88999999985 2347888
Q ss_pred EEEEeecC
Q 007890 317 ATTNIVSR 324 (586)
Q Consensus 317 l~~~~~~~ 324 (586)
++++....
T Consensus 504 ~HCHiL~H 511 (523)
T PRK10965 504 AHCHLLEH 511 (523)
T ss_pred EEeCchhh
Confidence 88876543
No 26
>PLN02835 oxidoreductase
Probab=99.01 E-value=5.3e-08 Score=106.41 Aligned_cols=255 Identities=14% Similarity=0.131 Sum_probs=150.2
Q ss_pred eEEEEECCCCCCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCc----cccccCCCCCeEEEEEEc-C
Q 007890 61 KVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEG----VTQCPILPGETFTYKFVV-D 135 (586)
Q Consensus 61 ~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~----~~q~~i~pG~~~~Y~f~~-~ 135 (586)
...++|||+. .|++++++|+++++|+.|.-......+|..|....- -..||.+- +....|.||++++..+++ +
T Consensus 191 ~d~~liNG~~-~~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~V-I~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~ 268 (539)
T PLN02835 191 PDGVLINGQT-QSTFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKL-VEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQ 268 (539)
T ss_pred CceEEEcccc-CceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEE-EEECCccCCCceeeEEEECcCceEEEEEEcCC
Confidence 3578999996 689999999999999999955567888888876532 45788753 234679999999999999 4
Q ss_pred CCcceeeecccccc-ccCcceEEEEEECCCC---CCCCC-cc-cc--c------ceEEEEecccCCHHH--H-H------
Q 007890 136 RPGTYLYHAHYGMQ-REAGLYGSIRVSLPEG---ESEPY-AY-DY--D------RSIILNDWFHRSAFE--Q-A------ 192 (586)
Q Consensus 136 ~~Gt~wYH~H~~~q-~~~Gl~G~liV~~~~~---~~~p~-~~-d~--e------~~l~l~d~~~~~~~~--~-~------ 192 (586)
.+|.||...-.... ....-.+.|-.++... .+.|. .. +. + ....+.......... . .
T Consensus 269 ~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 348 (539)
T PLN02835 269 SPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPT 348 (539)
T ss_pred CCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCC
Confidence 57999998642111 1111233333322211 01111 00 00 0 000011000000000 0 0
Q ss_pred hcccC-CCCCCCCCCcceeecCCCCCCCCCCCCCCC------ccceeecC------CCC--CCCceEEEEeCCcEEEEEE
Q 007890 193 AGLSS-IPFQWVGEPQSLLIQGKGRFNCSSLNSPSL------NVGIICNE------TNP--ECSPYVITVIPGKTYRLRI 257 (586)
Q Consensus 193 ~~~~~-~~~~~~~~~~~~liNG~~~~~~~~~~~~~~------~~~~~~~~------~~~--~~~~~~~~v~~G~~~rlRl 257 (586)
..... ...........+.+||..+.. +..+.. ..+..|.. .+. -.....+.++.|+.+.|-|
T Consensus 349 ~~~~~~~~~~~~~g~~~w~iN~~s~~~---p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi 425 (539)
T PLN02835 349 KTIVLANSAPLINGKQRYAVNGVSYVN---SDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVF 425 (539)
T ss_pred ceEEEeccccccCCeEEEEECCcccCC---CCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEE
Confidence 00000 000000001346778877641 111110 01111210 000 0012356788899999999
Q ss_pred eecCCcceEEEEeCCCeeEEEec-CCcc----------ccceEEeEEEEccCceEEEEEEeCCCCCCceEEEEEeec
Q 007890 258 SSLTALSALSFQIEGHNMTVVEA-DGHN----------VEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVS 323 (586)
Q Consensus 258 iN~g~~~~~~~~i~gh~~~via~-DG~~----------~~P~~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~~~~~~ 323 (586)
-|.+.. .|.||+|||.|.|++. +|.+ ..|...|++.+.++...-+.+++++ +|.+.++++...
T Consensus 426 ~N~~~~-~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDN--PG~Wl~HCHi~~ 499 (539)
T PLN02835 426 QNNEKT-MQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDN--QGMWNMRSAIWE 499 (539)
T ss_pred ECCCCC-CCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcC--CEEeeeeecchh
Confidence 997644 7999999999999997 5522 2489999999999999999999987 898889988754
No 27
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.01 E-value=2.9e-08 Score=109.22 Aligned_cols=229 Identities=12% Similarity=0.094 Sum_probs=134.0
Q ss_pred eEEEEeCCcEEEEEEeecCCcceEEEEeCCCeeEEE-ecCCccccceEEeEEEEccCceEEEEEEeCCCCCCceEEEEEe
Q 007890 243 YVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVV-EADGHNVEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNI 321 (586)
Q Consensus 243 ~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~vi-a~DG~~~~P~~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~~~~ 321 (586)
++|+++.|+++++++.|--.. ...+|+||-...-- ..||.+ .+..-.|.||+.+...+++.+ ..|+||.+++.
T Consensus 34 P~i~~~~GD~v~v~v~N~l~~-~tsiHwHGl~q~~~~~~DGv~----~vTq~pI~PG~s~~Y~f~~~~-~~GT~WYHsH~ 107 (539)
T TIGR03389 34 PTLYAREGDTVIVNVTNNVQY-NVTIHWHGVRQLRNGWADGPA----YITQCPIQPGQSYVYNFTITG-QRGTLWWHAHI 107 (539)
T ss_pred CEEEEEcCCEEEEEEEeCCCC-CeeEecCCCCCCCCCCCCCCc----ccccCCcCCCCeEEEEEEecC-CCeeEEEecCc
Confidence 589999999999999998764 57788887643221 258864 334456899999999999863 37999999876
Q ss_pred ecCCCCCCCCCeEEEEEecCCCCCCCCCCCCCCCCCcCCccccccccccccccCCCCCCCCCCCceEEEEEeeeecCCCe
Q 007890 322 VSRNATFTTPPGLAILNYYPNHPKRSPPTTPPSGPLWNDVGSRLNQSLAIKARKGFIIPPPQSADRMIVMLNTQNNVSGN 401 (586)
Q Consensus 322 ~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 401 (586)
.... ....+-|...+..... .+ .+..+. +....+.+..- ......-... ...+. ...-.
T Consensus 108 ~~~~-----~Gl~G~lIV~~~~~~~-----~~-~~~~d~-----e~~l~l~Dw~~---~~~~~~~~~~-~~~~~-~~~~~ 166 (539)
T TIGR03389 108 SWLR-----ATVYGAIVILPKPGVP-----YP-FPKPDR-----EVPIILGEWWN---ADVEAVINQA-NQTGG-APNVS 166 (539)
T ss_pred hhhh-----ccceEEEEEcCCCCCC-----CC-CCCCCc-----eEEEEeccccc---CCHHHHHHHH-HhcCC-CCCcc
Confidence 4321 1233333333211100 00 000000 00000111100 0000000000 00000 00001
Q ss_pred EEEEEcCccccCCCCchHHHhhhccccCCCCCCCCCCCCccccccccCcCCccccccceEEEecCCCEEEEEEecCCCCC
Q 007890 402 VRWSVNKVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRNGVYRLNFNSTVDIILQNANSLS 481 (586)
Q Consensus 402 ~~~~iNg~~~~~p~~p~l~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~ 481 (586)
..+.|||+...... .. .....++.++.|++++|+|+|.+..
T Consensus 167 d~~liNG~~~~~~~------------------~~--------------------~~~~~~i~v~~G~~~RlRlINa~~~- 207 (539)
T TIGR03389 167 DAYTINGHPGPLYN------------------CS--------------------SKDTFKLTVEPGKTYLLRIINAALN- 207 (539)
T ss_pred ceEEECCCcCCCCC------------------CC--------------------CCCceEEEECCCCEEEEEEEeccCC-
Confidence 23567776321100 00 0011248899999999999998754
Q ss_pred CCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEeCC-ceeeEEeecc
Q 007890 482 NKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRADN-PGAWAFHCHI 553 (586)
Q Consensus 482 ~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~adn-pG~w~~HCHi 553 (586)
..+-|||+||.|+|++.. |.+ ..|...|++.|.+|+...|.++++. +|.|.++-+.
T Consensus 208 ----~~~~~~idgH~~~VIa~D-G~~-----------~~P~~~~~l~i~~GqRydVlv~a~~~~g~y~i~~~~ 264 (539)
T TIGR03389 208 ----DELFFAIANHTLTVVEVD-ATY-----------TKPFKTKTIVIGPGQTTNVLLTADQSPGRYFMAARP 264 (539)
T ss_pred ----ceEEEEECCCeEEEEEeC-Ccc-----------cCceEeCeEEecCCCEEEEEEECCCCCceEEEEEec
Confidence 268899999999999984 322 2577789999999999999999975 8999887654
No 28
>PLN02604 oxidoreductase
Probab=98.96 E-value=4.5e-09 Score=115.88 Aligned_cols=88 Identities=19% Similarity=0.196 Sum_probs=68.2
Q ss_pred EEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEe
Q 007890 462 YRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRA 541 (586)
Q Consensus 462 ~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~a 541 (586)
+.++.|+.+++.+.|.... ..|+||+||... .+. .+. +. ........|+||+..+++|++
T Consensus 57 i~~~~Gd~v~v~v~N~l~~-----~~~~iH~HG~~~--~~~---~~~-----DG-----~~~~tq~~i~pg~s~~y~f~~ 116 (566)
T PLN02604 57 ILAQQGDTVIVELKNSLLT-----ENVAIHWHGIRQ--IGT---PWF-----DG-----TEGVTQCPILPGETFTYEFVV 116 (566)
T ss_pred EEEECCCEEEEEEEeCCCC-----CCCCEEeCCCCC--CCC---ccc-----cC-----CCccccCccCCCCeEEEEEEc
Confidence 8899999999999997532 279999999942 111 000 00 011234578999999999999
Q ss_pred CCceeeEEeecchhhhhcCceEEEeccc
Q 007890 542 DNPGAWAFHCHIESHFYMGMGVVFAEGI 569 (586)
Q Consensus 542 dnpG~w~~HCHil~H~d~GM~~~~~~~~ 569 (586)
+++|.|.||||...|++.||+..|.+.+
T Consensus 117 ~~~Gt~wyH~H~~~q~~~Gl~G~liV~~ 144 (566)
T PLN02604 117 DRPGTYLYHAHYGMQREAGLYGSIRVSL 144 (566)
T ss_pred CCCEEEEEeeCcHHHHhCCCeEEEEEEe
Confidence 9999999999999999999999987654
No 29
>PRK10883 FtsI repressor; Provisional
Probab=98.96 E-value=2.3e-08 Score=107.82 Aligned_cols=222 Identities=15% Similarity=0.074 Sum_probs=133.9
Q ss_pred eeEEEEECCCCCCCcEEeecCCEEEEEEEeCCCCCCeeEEe-cce--eeccCCCCCCCCc-----cccccCCCCCeEEEE
Q 007890 60 RKVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHW-HGI--RQIGTPWADGTEG-----VTQCPILPGETFTYK 131 (586)
Q Consensus 60 ~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~-HGl--~~~~~~~~DGv~~-----~~q~~i~pG~~~~Y~ 131 (586)
....+++||+. .|.|.++.| ++++|+.|.-......+++ .|. ++. ..||... +.+..|.||++++..
T Consensus 208 ~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vI---a~DGg~~~~P~~~~~l~l~pGeR~dvl 282 (471)
T PRK10883 208 VGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVI---AGDQGFLPAPVSVKQLSLAPGERREIL 282 (471)
T ss_pred cCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEE---EeCCCcccCCcEeCeEEECCCCeEEEE
Confidence 34578999985 789999876 8999999994445677877 454 444 3585442 245788999999999
Q ss_pred EEcCCCcceeeeccccccccCcceEE------------EEEECCCCCCCCCcccccceEEEEecccCCHH-HHHhcccCC
Q 007890 132 FVVDRPGTYLYHAHYGMQREAGLYGS------------IRVSLPEGESEPYAYDYDRSIILNDWFHRSAF-EQAAGLSSI 198 (586)
Q Consensus 132 f~~~~~Gt~wYH~H~~~q~~~Gl~G~------------liV~~~~~~~~p~~~d~e~~l~l~d~~~~~~~-~~~~~~~~~ 198 (586)
.++.+.+.+.+++-......+++.+. +-++.... .+. .....+..+......... .....+.
T Consensus 283 Vd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~p~~l~~~~~~~~~~~~~~~~~-- 357 (471)
T PRK10883 283 VDMSNGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGL--LPL-VTDNLPMRLLPDEIMEGSPIRSREIS-- 357 (471)
T ss_pred EECCCCceEEEECCCccccccccccccCCccccccceeEEEEcccc--ccC-CCCcCChhhcCCCCCCCCCcceEEEE--
Confidence 99877677777763111111111111 11111100 000 000011100000000000 0000000
Q ss_pred CCCCCCCCcceeecCCCCCCCCCCCCCCCccceeecCCCCCCCceEEEEeCCcEEEEEEeecCCcceEEEEeCCCeeEEE
Q 007890 199 PFQWVGEPQSLLIQGKGRFNCSSLNSPSLNVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVV 278 (586)
Q Consensus 199 ~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~vi 278 (586)
.....+.|||+.+.. ....++++.|++++|+|.|.. .|.||||+|.|+|+
T Consensus 358 -----l~~~~~~INg~~~~~----------------------~~~~~~~~~g~~e~W~~~n~~---~HP~HlHg~~FqVl 407 (471)
T PRK10883 358 -----LGDDLPGINGALWDM----------------------NRIDVTAQQGTWERWTVRADM---PQAFHIEGVMFLIR 407 (471)
T ss_pred -----ecCCcCccCCcccCC----------------------CcceeecCCCCEEEEEEECCC---CcCEeECCccEEEE
Confidence 011234699998751 112467899999999998863 69999999999999
Q ss_pred ecCCccccc---eEEeEEEEccCceEEEEEEeCCCCCC---ceEEEEEeecC
Q 007890 279 EADGHNVEP---FVVQNLFIYSGETYSVLIKADQNPTR---NYWATTNIVSR 324 (586)
Q Consensus 279 a~DG~~~~P---~~~~~l~l~pGqR~dVlv~~~~~~~g---~y~l~~~~~~~ 324 (586)
+.||....| -..|+|.+. +++.++++++. ..+ .|.++++....
T Consensus 408 ~~~G~~~~~~~~gwkDTV~v~--~~v~i~~~f~~-~~~~~~~~m~HCHiLeH 456 (471)
T PRK10883 408 NVNGAMPFPEDRGWKDTVWVD--GQVELLVYFGQ-PSWAHFPFLFYSQTLEM 456 (471)
T ss_pred EecCCCCCccccCcCcEEEcC--CeEEEEEEecC-CCCCCCcEEeecccccc
Confidence 999986544 347999993 57999999987 333 58888776544
No 30
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.95 E-value=1.2e-09 Score=98.35 Aligned_cols=90 Identities=24% Similarity=0.400 Sum_probs=72.6
Q ss_pred CCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCC-------------Cc-cccccCCCCCeEEEEEEcCCC
Q 007890 72 GPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGT-------------EG-VTQCPILPGETFTYKFVVDRP 137 (586)
Q Consensus 72 gP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv-------------~~-~~q~~i~pG~~~~Y~f~~~~~ 137 (586)
.+.+.++.|+.+++.+.|. ...++.+|+||....-....++. +. ..-..|.||+..+.+|.++.+
T Consensus 33 ~~~~~~~~g~~v~~~l~N~-~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~~ 111 (138)
T PF07731_consen 33 TPVIEVKNGDVVEIVLQNN-GSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADNP 111 (138)
T ss_dssp TSEEEEETTSEEEEEEEEC-TTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETST
T ss_pred cceEEEeCCCEEEEEEECC-CCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeecc
Confidence 4789999999999999998 88899999999865321111111 11 122578899999999999999
Q ss_pred cceeeeccccccccCcceEEEEEEC
Q 007890 138 GTYLYHAHYGMQREAGLYGSIRVSL 162 (586)
Q Consensus 138 Gt~wYH~H~~~q~~~Gl~G~liV~~ 162 (586)
|.|.||||...+...||.+.+.|.+
T Consensus 112 G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 112 GPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEEEEESSHHHHHTT-EEEEEECH
T ss_pred eEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999975
No 31
>PRK02710 plastocyanin; Provisional
Probab=98.85 E-value=3.2e-08 Score=86.19 Aligned_cols=76 Identities=26% Similarity=0.399 Sum_probs=56.4
Q ss_pred CCCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccCCCCCeEEEEEEcCCCcceeeecccccc
Q 007890 70 TPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAHYGMQ 149 (586)
Q Consensus 70 ~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H~~~q 149 (586)
|-.+.|++++||+| +++|. ...++++.+.|.. +.. .+...+.||++++|.|.. +|+|-|+|- .+
T Consensus 44 F~P~~i~v~~Gd~V--~~~N~-~~~~H~v~~~~~~--------~~~-~~~~~~~pg~t~~~tF~~--~G~y~y~C~--~H 107 (119)
T PRK02710 44 FEPSTLTIKAGDTV--KWVNN-KLAPHNAVFDGAK--------ELS-HKDLAFAPGESWEETFSE--AGTYTYYCE--PH 107 (119)
T ss_pred EeCCEEEEcCCCEE--EEEEC-CCCCceEEecCCc--------ccc-ccccccCCCCEEEEEecC--CEEEEEEcC--CC
Confidence 33678999999985 56787 6678887765431 110 112347999999999965 999999997 66
Q ss_pred ccCcceEEEEEE
Q 007890 150 REAGLYGSIRVS 161 (586)
Q Consensus 150 ~~~Gl~G~liV~ 161 (586)
...||.|.|+|+
T Consensus 108 ~~~gM~G~I~V~ 119 (119)
T PRK02710 108 RGAGMVGKITVE 119 (119)
T ss_pred ccCCcEEEEEEC
Confidence 778999999984
No 32
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.82 E-value=1.4e-07 Score=102.03 Aligned_cols=233 Identities=17% Similarity=0.085 Sum_probs=144.7
Q ss_pred ceeEEEEECCCCCCCcEEeecCCEEEEEEEeCCC-CCCeeEEecceeeccCCCCCCCC----ccccccCCCCCeEEEEEE
Q 007890 59 FRKVVITINGRTPGPTIQARQNDTVIVELKNSLL-TENVAIHWHGIRQIGTPWADGTE----GVTQCPILPGETFTYKFV 133 (586)
Q Consensus 59 ~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~-~~~~siH~HGl~~~~~~~~DGv~----~~~q~~i~pG~~~~Y~f~ 133 (586)
.......+||+ .-|.+.+.. ..+++++.|. . .....+++.|....- -..||.+ .+.+..+.|||+++...+
T Consensus 187 ~~g~~~~vnG~-~~p~~~~~~-g~~rlRl~n~-~~~~~~~~~~~~~~~~V-i~~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 187 FPGDTLLVNGA-ILPFKAVPG-GVVRLRLLNA-GNARTYHLALGGGPLTV-IAVDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCeEEECCC-ccceeecCC-CeEEEEEEec-CCceEEEEEecCceEEE-EEeCCcCcCceeeeeEEecCcceEEEEEE
Confidence 34455666763 245555554 4699999999 5 666777777654432 3468866 566789999999999999
Q ss_pred cCCCcceeeeccccccccCcceEEEEEECCCCCCCCCcccccceEEEEec-ccCCHHHHHhcccCCC--------CCCCC
Q 007890 134 VDRPGTYLYHAHYGMQREAGLYGSIRVSLPEGESEPYAYDYDRSIILNDW-FHRSAFEQAAGLSSIP--------FQWVG 204 (586)
Q Consensus 134 ~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~d~e~~l~l~d~-~~~~~~~~~~~~~~~~--------~~~~~ 204 (586)
....|++-+.|.. .+..+-+.+..-...... .....++........|- ...............+ ..+..
T Consensus 263 ~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (451)
T COG2132 263 MNDGGAVTLTALG-EDMPDTLKGFRAPNPILT-PSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLIGGI 340 (451)
T ss_pred cCCCCeEEEEecc-ccCCceeeeeeccccccc-cccccccccccCCCcchhhccccccchhhcCCCcccccccchhhccc
Confidence 8778999999986 333333333332222110 00001111111111110 0000000000000000 00011
Q ss_pred CCcceeecCCCCCCCCCCCCCCCccceeecCCCCCCCceEEEEeCCcEEEEEEeecCCcceEEEEeCCCeeEEEecCCcc
Q 007890 205 EPQSLLIQGKGRFNCSSLNSPSLNVGIICNETNPECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHN 284 (586)
Q Consensus 205 ~~~~~liNG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~ 284 (586)
....+.+||+.+.+ ....+.++.|+++||+|.|-+. ..|.||+||+.|.|++.| ..
T Consensus 341 ~~~~~~~n~~~~~~----------------------~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~-~~ 396 (451)
T COG2132 341 GGYVWAINGKAFDD----------------------NRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGD-AP 396 (451)
T ss_pred ccccccccCccCCC----------------------CcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecC-CC
Confidence 23456777777651 1346789999999999999998 689999999999999999 33
Q ss_pred c---cceEEeEEEEccCceEEEEEEeCCCCCCceEEEEEeec
Q 007890 285 V---EPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVS 323 (586)
Q Consensus 285 ~---~P~~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~~~~~~ 323 (586)
. .+...|++.+.++++..+.++++. +|.|.+.++...
T Consensus 397 ~~~~~~~~kDTv~v~~~~~~~v~~~a~~--~g~~~~HCH~l~ 436 (451)
T COG2132 397 APGAAPGWKDTVLVAPGERLLVRFDADY--PGPWMFHCHILE 436 (451)
T ss_pred cccccCccceEEEeCCCeEEEEEEeCCC--CCceEEeccchh
Confidence 2 357899999999999999999987 668888877653
No 33
>PLN02354 copper ion binding / oxidoreductase
Probab=98.76 E-value=5.8e-07 Score=98.51 Aligned_cols=224 Identities=11% Similarity=0.055 Sum_probs=128.9
Q ss_pred eEEEEeCCcEEEEEEeecCCcceEEEEeCCCeeEE-EecCCccccceEEeEEEEccCceEEEEEEeCCCCCCceEEEEEe
Q 007890 243 YVITVIPGKTYRLRISSLTALSALSFQIEGHNMTV-VEADGHNVEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNI 321 (586)
Q Consensus 243 ~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~v-ia~DG~~~~P~~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~~~~ 321 (586)
|+|++++|+++++++.|.-.. ...+|.||-...- -..||.+ . ..-.|.||+.+...+++.+ ..|+||.+++.
T Consensus 58 P~I~~~~GD~v~V~v~N~l~~-~ttiHWHGi~q~~~~~~DGv~---~--TQcpI~PG~sf~Y~F~~~~-q~GT~WYHsH~ 130 (552)
T PLN02354 58 PNINSTSNNNIVINVFNNLDE-PFLLTWSGIQQRKNSWQDGVP---G--TNCPIPPGTNFTYHFQPKD-QIGSYFYYPST 130 (552)
T ss_pred CcEEEeCCCEEEEEEEECCCC-CcccccccccCCCCcccCCCc---C--CcCCCCCCCcEEEEEEeCC-CCcceEEecCc
Confidence 589999999999999998743 5677777755432 2479964 2 3458999999999999853 37999999865
Q ss_pred ecCCCCCCCCCeEEEEEecCCCCCCCCCCCCCCCCCcCCccccccccccccccCCCCCCCCCCCceEEEEEeeeecCCCe
Q 007890 322 VSRNATFTTPPGLAILNYYPNHPKRSPPTTPPSGPLWNDVGSRLNQSLAIKARKGFIIPPPQSADRMIVMLNTQNNVSGN 401 (586)
Q Consensus 322 ~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 401 (586)
..... . ...+-|...+....+ .+ ...++. +....+.+..- ........ .+... ......
T Consensus 131 ~~Q~~---~-Gl~G~lII~~~~~~~-----~p-~~~~d~-----e~~l~l~Dw~~---~~~~~~~~--~~~~g-~~~~~~ 189 (552)
T PLN02354 131 GMHRA---A-GGFGGLRVNSRLLIP-----VP-YADPED-----DYTVLIGDWYT---KSHTALKK--FLDSG-RTLGRP 189 (552)
T ss_pred cceec---C-CccceEEEcCCcCCC-----CC-CCCcCc-----eEEEEeeeecc---CCHHHHHH--HHhcC-CCCCCC
Confidence 32111 1 122222222111000 00 000000 00000000000 00000000 00000 000000
Q ss_pred EEEEEcCccccCCCCchHHHhhhccccCCCCCCCCCCCCccccccccCcCCccccccceEEEecCCCEEEEEEecCCCCC
Q 007890 402 VRWSVNKVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRNGVYRLNFNSTVDIILQNANSLS 481 (586)
Q Consensus 402 ~~~~iNg~~~~~p~~p~l~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~ 481 (586)
....|||+.... + .....++.++.|++++|+|+|.+..
T Consensus 190 d~~liNG~~~~~----------------~-------------------------~~~~~~~~v~~Gk~yRlRiINa~~~- 227 (552)
T PLN02354 190 DGVLINGKSGKG----------------D-------------------------GKDEPLFTMKPGKTYRYRICNVGLK- 227 (552)
T ss_pred CeEEEeCCcCCC----------------C-------------------------CCCceEEEECCCCEEEEEEEecCCC-
Confidence 123455542100 0 0012248999999999999998765
Q ss_pred CCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEeC-CceeeEEeec
Q 007890 482 NKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRAD-NPGAWAFHCH 552 (586)
Q Consensus 482 ~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~ad-npG~w~~HCH 552 (586)
...-||+.||.|+||+.. |.+ ..|...|++.|.+|++..+-++++ .+|.|.+.-.
T Consensus 228 ----~~~~f~IdgH~~tVIa~D-G~~-----------v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~ 283 (552)
T PLN02354 228 ----SSLNFRIQGHKMKLVEME-GSH-----------VLQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVAS 283 (552)
T ss_pred ----ceEEEEECCceEEEEEeC-Ccc-----------cCCcceeEEEEccCceEEEEEECCCCCCcEEEEEe
Confidence 379999999999999984 322 235567999999999999999997 4798877665
No 34
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.75 E-value=4.4e-07 Score=99.68 Aligned_cols=233 Identities=11% Similarity=0.109 Sum_probs=133.4
Q ss_pred eEEEEeCCcEEEEEEeecCCcceEEEEeCCCeeEE-EecCCccccceEEeEEEEccCceEEEEEEeCCCCCCceEEEEEe
Q 007890 243 YVITVIPGKTYRLRISSLTALSALSFQIEGHNMTV-VEADGHNVEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNI 321 (586)
Q Consensus 243 ~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~v-ia~DG~~~~P~~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~~~~ 321 (586)
++|++++|+++++++.|.-......+|.||-.+.- -..||.+. +..-.|.||+.++..++++...+|+||.+++.
T Consensus 39 P~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~----vTQcpI~PG~sf~Y~f~~~~~q~GT~WYHsH~ 114 (538)
T TIGR03390 39 PEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPL----ASQWPIPPGHFFDYEIKPEPGDAGSYFYHSHV 114 (538)
T ss_pred CeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcc----cccCCCCCCCcEEEEEEecCCCCeeeEEecCC
Confidence 58999999999999999865456788888875432 24799852 22336889999999998753347999999876
Q ss_pred ecCCCCCCCCCeEEEEEecCCCCCCCCCCCCCCCCCcCCccccccccccccccCCCCCCCCCCCceEEEEEeeeecCCCe
Q 007890 322 VSRNATFTTPPGLAILNYYPNHPKRSPPTTPPSGPLWNDVGSRLNQSLAIKARKGFIIPPPQSADRMIVMLNTQNNVSGN 401 (586)
Q Consensus 322 ~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 401 (586)
.... . ...+.|...+.... + . .++ .+....+.+..- .......... ...........
T Consensus 115 ~~Q~---~--~l~G~lIV~~~~~~-------~-~-~~d-----~e~~l~l~Dw~~---~~~~~~~~~~-~~~~~~~~~~~ 171 (538)
T TIGR03390 115 GFQA---V--TAFGPLIVEDCEPP-------P-Y-KYD-----DERILLVSDFFS---ATDEEIEQGL-LSTPFTWSGET 171 (538)
T ss_pred chhh---h--cceeEEEEccCCcc-------C-C-Ccc-----CcEEEEEeCCCC---CCHHHHHhhh-hccCCccCCCC
Confidence 3221 1 23444444421100 0 0 011 011111111110 0000000000 00000000001
Q ss_pred EEEEEcCccccCCCCchHHHhhhccccCCCCCCCCCCCCccccccccCcCCccccccceEEEecCCCEEEEEEecCCCCC
Q 007890 402 VRWSVNKVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRNGVYRLNFNSTVDIILQNANSLS 481 (586)
Q Consensus 402 ~~~~iNg~~~~~p~~p~l~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~ 481 (586)
....|||+......... .++ . ..+ ...++.++.|++++|+|+|.+..
T Consensus 172 d~~liNG~~~~~~~~~~-------~~~----~--------------------~~~-~~~~~~v~~G~~yRlRlINa~~~- 218 (538)
T TIGR03390 172 EAVLLNGKSGNKSFYAQ-------INP----S--------------------GSC-MLPVIDVEPGKTYRLRFIGATAL- 218 (538)
T ss_pred ceEEECCcccccccccc-------ccC----C--------------------CCC-cceEEEECCCCEEEEEEEccCCc-
Confidence 23566776321100000 000 0 000 01248899999999999998765
Q ss_pred CCCCCCCCccccCCC-eEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEeCCc--------eeeEEee
Q 007890 482 NKTSETHPWHLHGHD-FWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRADNP--------GAWAFHC 551 (586)
Q Consensus 482 ~~~~~~HP~HlHG~~-F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~adnp--------G~w~~HC 551 (586)
...-|+|.||+ |+|++.... +..|...|++.|.+|+...|.++++.+ |.|.+.-
T Consensus 219 ----~~~~~~idgH~~~~VIa~DG~------------~~~P~~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~ 281 (538)
T TIGR03390 219 ----SLISLGIEDHENLTIIEADGS------------YTKPAKIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQF 281 (538)
T ss_pred ----eEEEEEECCCCeEEEEEeCCC------------CCCceEeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEE
Confidence 26899999999 999998432 235788899999999999999998753 6665554
No 35
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.70 E-value=7e-07 Score=98.33 Aligned_cols=245 Identities=14% Similarity=0.137 Sum_probs=136.6
Q ss_pred cEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCc----cccccCCCCCeEEEEEEcCC-C-cceeeecccc
Q 007890 74 TIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEG----VTQCPILPGETFTYKFVVDR-P-GTYLYHAHYG 147 (586)
Q Consensus 74 ~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~----~~q~~i~pG~~~~Y~f~~~~-~-Gt~wYH~H~~ 147 (586)
+|.+++|+++++||.|.-......++..|....- -..||.+- +....|.||++++..+++++ + |.||.+.-..
T Consensus 204 ~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~V-Ia~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~ 282 (541)
T TIGR03388 204 ILHVEPGKTYRLRIASTTALAALNFAIEGHKLTV-VEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVR 282 (541)
T ss_pred EEEECCCCEEEEEEEcccccceEEEEECCCEEEE-EEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecc
Confidence 4899999999999999845567777777765432 34688752 24567999999999999954 3 5899987633
Q ss_pred cc---ccCcceEEEEEECCCC-CCCC-------Cccc-cc----ceE-EEEec-ccCCHHHHHhc--ccCCCCCCCCCCc
Q 007890 148 MQ---REAGLYGSIRVSLPEG-ESEP-------YAYD-YD----RSI-ILNDW-FHRSAFEQAAG--LSSIPFQWVGEPQ 207 (586)
Q Consensus 148 ~q---~~~Gl~G~liV~~~~~-~~~p-------~~~d-~e----~~l-~l~d~-~~~~~~~~~~~--~~~~~~~~~~~~~ 207 (586)
.+ ...+ .+++...... ...| ..++ .+ ..+ .+... ........... ....... .....
T Consensus 283 ~~~~~~~~~--~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 359 (541)
T TIGR03388 283 GRKPNTPPG--LTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNK-INGYT 359 (541)
T ss_pred cCCCCCccE--EEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcc-cCceE
Confidence 32 1122 2444433211 1101 0010 00 000 00000 00000000000 0000000 00112
Q ss_pred ceeecCCCCCCCCCC-------CC-----CC-Cccceeec-------CC-CCCCCceEEEEeCCcEEEEEEeecCC----
Q 007890 208 SLLIQGKGRFNCSSL-------NS-----PS-LNVGIICN-------ET-NPECSPYVITVIPGKTYRLRISSLTA---- 262 (586)
Q Consensus 208 ~~liNG~~~~~~~~~-------~~-----~~-~~~~~~~~-------~~-~~~~~~~~~~v~~G~~~rlRliN~g~---- 262 (586)
.+.+||..+..-..+ .. .. ....+.|+ .. .......++.++.|++|.+.|.|...
T Consensus 360 ~~~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~ 439 (541)
T TIGR03388 360 KWAINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGN 439 (541)
T ss_pred EEEECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCC
Confidence 367787765300000 00 00 00001111 00 00011235788999999999999652
Q ss_pred -cceEEEEeCCCeeEEEecC-Ccc-----------ccceEEeEEEEccCceEEEEEEeCCCCCCceEEEEEeecC
Q 007890 263 -LSALSFQIEGHNMTVVEAD-GHN-----------VEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIVSR 324 (586)
Q Consensus 263 -~~~~~~~i~gh~~~via~D-G~~-----------~~P~~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~~~~~~~ 324 (586)
...|.||+|||.|.|++.. |.+ ..|...|++.+.++.-.-+.+++++ +|-+.++++....
T Consensus 440 ~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adN--PG~W~~HCHi~~H 512 (541)
T TIGR03388 440 NSETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADN--PGVWAFHCHIEPH 512 (541)
T ss_pred CCCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCC--CeEeeeeccchhh
Confidence 3469999999999999987 432 1478899999999999988888887 7888888876543
No 36
>PLN02792 oxidoreductase
Probab=98.68 E-value=1.1e-06 Score=95.86 Aligned_cols=219 Identities=11% Similarity=0.096 Sum_probs=126.5
Q ss_pred eEEEEeCCcEEEEEEeecCCcceEEEEeCCCeeEEE-ecCCccccceEEeEEEEccCceEEEEEEeCCCCCCceEEEEEe
Q 007890 243 YVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVV-EADGHNVEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNI 321 (586)
Q Consensus 243 ~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~vi-a~DG~~~~P~~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~~~~ 321 (586)
|+|++++|+++++++.|--. ....+|.||-...-- ..||.+ . + .-.|.||+.+...+++++ ..|+||.+++.
T Consensus 47 P~I~~~~GD~v~V~v~N~L~-~~ttiHWHGl~q~~~~~~DGv~---~-t-qcPI~PG~sftY~F~~~~-q~GT~WYHsH~ 119 (536)
T PLN02792 47 PEIRSLTNDNLVINVHNDLD-EPFLLSWNGVHMRKNSYQDGVY---G-T-TCPIPPGKNYTYDFQVKD-QVGSYFYFPSL 119 (536)
T ss_pred CcEEEECCCEEEEEEEeCCC-CCcCEeCCCcccCCCCccCCCC---C-C-cCccCCCCcEEEEEEeCC-CccceEEecCc
Confidence 58999999999999999875 356777777654332 379963 2 2 268999999999999863 37999999875
Q ss_pred ecCCCCCCCCCeEE-EEEecCCCCCCCCCCCCCCCCCcCCccccccccccccccCCCCCCCCCCCceEEEEEeeeecCCC
Q 007890 322 VSRNATFTTPPGLA-ILNYYPNHPKRSPPTTPPSGPLWNDVGSRLNQSLAIKARKGFIIPPPQSADRMIVMLNTQNNVSG 400 (586)
Q Consensus 322 ~~~~~~~~~~~~~a-il~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g 400 (586)
..... . ..++ ++-+.... . ..+ .+.++. +....+.+... ......... +........-
T Consensus 120 ~~q~~---~-Gl~G~liI~~~~~-~-----~~p-~~~~d~-----e~~i~l~Dw~~---~~~~~~~~~--~~~g~~~~~~ 178 (536)
T PLN02792 120 AVQKA---A-GGYGSLRIYSLPR-I-----PVP-FPEPAG-----DFTFLIGDWYR---RNHTTLKKI--LDGGRKLPLM 178 (536)
T ss_pred chhhh---c-ccccceEEeCCcc-c-----CcC-CCcccc-----eeEEEeccccc---CCHHHHHHH--hhccCcCCCC
Confidence 32211 1 1222 22222110 0 000 010000 00000111000 000000000 0000000000
Q ss_pred eEEEEEcCccccCCCCchHHHhhhccccCCCCCCCCCCCCccccccccCcCCccccccceEEEecCCCEEEEEEecCCCC
Q 007890 401 NVRWSVNKVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRNGVYRLNFNSTVDIILQNANSL 480 (586)
Q Consensus 401 ~~~~~iNg~~~~~p~~p~l~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~ 480 (586)
.....|||+... ...++.++.|++++|+|+|.+..
T Consensus 179 ~d~~liNG~~~~---------------------------------------------~~~~~~v~~Gk~yRlRliNa~~~ 213 (536)
T PLN02792 179 PDGVMINGQGVS---------------------------------------------YVYSITVDKGKTYRFRISNVGLQ 213 (536)
T ss_pred CCEEEEeccCCC---------------------------------------------CcceEEECCCCEEEEEEEEcCCC
Confidence 012345554110 01138899999999999998765
Q ss_pred CCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEeCC-ceeeEEee
Q 007890 481 SNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRADN-PGAWAFHC 551 (586)
Q Consensus 481 ~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~adn-pG~w~~HC 551 (586)
...-|+|.||.|.|++.. |.+ ..|...|++.|.+|+...+-++++. +|.|.+.-
T Consensus 214 -----~~~~f~i~gH~~tVI~~D-G~~-----------v~p~~~~~l~i~~GqRydVlV~a~~~~g~Y~i~a 268 (536)
T PLN02792 214 -----TSLNFEILGHQLKLIEVE-GTH-----------TVQSMYTSLDIHVGQTYSVLVTMDQPPQNYSIVV 268 (536)
T ss_pred -----ceEEEEECCcEEEEEEeC-Ccc-----------CCCcceeEEEEccCceEEEEEEcCCCCceEEEEE
Confidence 378999999999999984 322 2355679999999999999999875 57766653
No 37
>PLN02168 copper ion binding / pectinesterase
Probab=98.67 E-value=1.3e-06 Score=95.51 Aligned_cols=210 Identities=11% Similarity=0.122 Sum_probs=121.9
Q ss_pred eEEEEeCCcEEEEEEeecCCcceEEEEeCCCeeEEE-ecCCccccceEEeEEEEccCceEEEEEEeCCCCCCceEEEEEe
Q 007890 243 YVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVV-EADGHNVEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNI 321 (586)
Q Consensus 243 ~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~vi-a~DG~~~~P~~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~~~~ 321 (586)
++|+++.|+++++++.|.-.. ...+|.||....-- ..||.+ . ..-.|.||+++...+++++ ..|+||.+++.
T Consensus 57 P~I~~~~GD~v~V~v~N~L~~-~ttiHWHGl~~~~~~~~DGv~---g--tQcpI~PG~sftY~F~~~~-q~GT~WYHsH~ 129 (545)
T PLN02168 57 PLLNATANDVINVNIFNNLTE-PFLMTWNGLQLRKNSWQDGVR---G--TNCPILPGTNWTYRFQVKD-QIGSYFYFPSL 129 (545)
T ss_pred CcEEEECCCEEEEEEEeCCCC-CccEeeCCccCCCCCCcCCCC---C--CcCCCCCCCcEEEEEEeCC-CCceEEEecCh
Confidence 589999999999999998754 67888888654322 259974 2 3358999999999999963 37999999875
Q ss_pred ecCCCCCCCCCeEEEEEecCCCCCCCCCCCCCCCCCcCCccccccccccccccCCCCCCCCCCCceEEEEEeeeecCCCe
Q 007890 322 VSRNATFTTPPGLAILNYYPNHPKRSPPTTPPSGPLWNDVGSRLNQSLAIKARKGFIIPPPQSADRMIVMLNTQNNVSGN 401 (586)
Q Consensus 322 ~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 401 (586)
.... .....+.|...+.... ..| .+.++. +....+.+... ......... +..... ....
T Consensus 130 ~~Q~----~~GL~G~lII~~~~~~-----~~p-~~~~d~-----e~~l~l~Dw~~---~~~~~~~~~--~~~g~~-~~~~ 188 (545)
T PLN02168 130 LLQK----AAGGYGAIRIYNPELV-----PVP-FPKPDE-----EYDILIGDWFY---ADHTVMRAS--LDNGHS-LPNP 188 (545)
T ss_pred hhhh----hCcceeEEEEcCCccc-----CcC-cCcccc-----eeeEEEEecCC---CCHHHHHhh--hhcCCC-CCCC
Confidence 3211 1122333333321100 000 000000 00000111000 000000000 000000 0000
Q ss_pred EEEEEcCccccCCCCchHHHhhhccccCCCCCCCCCCCCccccccccCcCCccccccceEEEecCCCEEEEEEecCCCCC
Q 007890 402 VRWSVNKVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRNGVYRLNFNSTVDIILQNANSLS 481 (586)
Q Consensus 402 ~~~~iNg~~~~~p~~p~l~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~ 481 (586)
....|||+.- ...++.++.|++++|+|+|.+..
T Consensus 189 d~~liNG~~~----------------------------------------------~~~~~~v~~G~~yRlRiiNa~~~- 221 (545)
T PLN02168 189 DGILFNGRGP----------------------------------------------EETFFAFEPGKTYRLRISNVGLK- 221 (545)
T ss_pred CEEEEeccCC----------------------------------------------CcceEEeCCCCEEEEEEEeccCC-
Confidence 1233444310 01138899999999999998754
Q ss_pred CCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEeCC
Q 007890 482 NKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRADN 543 (586)
Q Consensus 482 ~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~adn 543 (586)
..+-|+|.||+|+|++.. |.+ ..|...|++.|.+|+...+-++++.
T Consensus 222 ----~~~~~~IdgH~~tVIa~D-G~~-----------v~p~~~~~l~i~~GqRydvlv~a~~ 267 (545)
T PLN02168 222 ----TCLNFRIQDHDMLLVETE-GTY-----------VQKRVYSSLDIHVGQSYSVLVTAKT 267 (545)
T ss_pred ----ceEEEEECCcEEEEEEEC-CeE-----------CCCceeeEEEEcCCceEEEEEEcCC
Confidence 269999999999999974 332 2356679999999999999999863
No 38
>PLN02991 oxidoreductase
Probab=98.61 E-value=1.1e-05 Score=88.06 Aligned_cols=254 Identities=12% Similarity=0.094 Sum_probs=144.2
Q ss_pred eEEEEECCCCCCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCC----ccccccCCCCCeEEEEEEc-C
Q 007890 61 KVVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTE----GVTQCPILPGETFTYKFVV-D 135 (586)
Q Consensus 61 ~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~----~~~q~~i~pG~~~~Y~f~~-~ 135 (586)
-..++|||+...+++.+++|+++++|+.|.-......++..|....- -..||.+ .+.+..|.||++++...++ +
T Consensus 190 ~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tV-Ia~DG~~~~p~~~~~l~i~~GQRydvlv~a~~ 268 (543)
T PLN02991 190 PDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKL-VEVEGTHTIQTPFSSLDVHVGQSYSVLITADQ 268 (543)
T ss_pred CCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEE-EEeCCccccceeeeEEEEcCCcEEEEEEECCC
Confidence 35789999976689999999999999999944455677777765432 3479975 2345789999999999999 5
Q ss_pred CCcceeeeccc--cccccCcceEEEEEECCCCC---CCCCcc-cccceEEEE---ecccCCH-------H-------HHH
Q 007890 136 RPGTYLYHAHY--GMQREAGLYGSIRVSLPEGE---SEPYAY-DYDRSIILN---DWFHRSA-------F-------EQA 192 (586)
Q Consensus 136 ~~Gt~wYH~H~--~~q~~~Gl~G~liV~~~~~~---~~p~~~-d~e~~l~l~---d~~~~~~-------~-------~~~ 192 (586)
..|.||.-.-. ..+...+ .+.|-..+.... +.|... +.+...-.. ++..... . .+.
T Consensus 269 ~~~~y~i~~~~~~~~~~~~~-~AIl~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~ 347 (543)
T PLN02991 269 PAKDYYIVVSSRFTSKILIT-TGVLHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINIT 347 (543)
T ss_pred CCCcEEEEEeeccCCCCcce-EEEEEeCCCCCCCCCCCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccccc
Confidence 57889987652 1111122 233333222110 111100 110000000 0000000 0 000
Q ss_pred hcccCC-CCCCCCCCcceeecCCCCCCCCCCCCCCC------ccc------eeec--CCCCCCCceEEEEeCCcEEEEEE
Q 007890 193 AGLSSI-PFQWVGEPQSLLIQGKGRFNCSSLNSPSL------NVG------IICN--ETNPECSPYVITVIPGKTYRLRI 257 (586)
Q Consensus 193 ~~~~~~-~~~~~~~~~~~liNG~~~~~~~~~~~~~~------~~~------~~~~--~~~~~~~~~~~~v~~G~~~rlRl 257 (586)
...... ........-.+.|||..+.. +..+.. ..+ +.-. ..........+.++.|+.+.+=|
T Consensus 348 ~~~~~~~~~~~~~g~~~~~iN~~s~~~---p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiVi 424 (543)
T PLN02991 348 RTIRLANSAGNIEGKQRYAVNSASFYP---ADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVF 424 (543)
T ss_pred eeEEEeecccccCceEEEEECCCccCC---CCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEE
Confidence 000000 00000001245677776541 111110 000 0000 00000112356778899999988
Q ss_pred eecCCcceEEEEeCCCeeEEEecC-Cc----------cccceEEeEEEEccCceEEEEEEeCCCCCCceEEEEEee
Q 007890 258 SSLTALSALSFQIEGHNMTVVEAD-GH----------NVEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNIV 322 (586)
Q Consensus 258 iN~g~~~~~~~~i~gh~~~via~D-G~----------~~~P~~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~~~~~ 322 (586)
-|.... .|.||+|||.|.|++.. |. ...|...|++.|.++.-.-+.+++++ +|-+.++++..
T Consensus 425 qn~~~~-~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDN--PG~W~~HCHi~ 497 (543)
T PLN02991 425 ENWEDI-VQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDN--VGMWNLRSELW 497 (543)
T ss_pred eCCCCC-CCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECCC--CEEeeeeeCcc
Confidence 886544 79999999999999853 21 23588999999999999999999887 89999998873
No 39
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.60 E-value=1e-07 Score=82.72 Aligned_cols=89 Identities=19% Similarity=0.196 Sum_probs=66.9
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEE
Q 007890 461 VYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFR 540 (586)
Q Consensus 461 ~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~ 540 (586)
++.++.|+.|++.+.|.... .+.+|.||...---...+|.. .. -.-.|.||+..+.+|+
T Consensus 27 tI~v~~Gd~v~i~~~N~l~~------~~siH~HG~~~~~~~~~DG~~--------~~-------~~~~i~pG~~~~Y~~~ 85 (117)
T PF07732_consen 27 TIRVREGDTVRITVTNNLDE------PTSIHWHGLHQPPSPWMDGVP--------GV-------TQCPIAPGESFTYEFT 85 (117)
T ss_dssp EEEEETTEEEEEEEEEESSS------GBSEEEETSBSTTGGGGSGGT--------TT-------SGSSBSTTEEEEEEEE
T ss_pred EEEEEcCCeeEEEEEecccc------ccccccceeeeeeeeecCCcc--------cc-------cceeEEeecceeeeEe
Confidence 49999999999999997765 899999997531100001100 00 0124789999999999
Q ss_pred eCC-ceeeEEeecchhhhhcCceEEEecccc
Q 007890 541 ADN-PGAWAFHCHIESHFYMGMGVVFAEGIE 570 (586)
Q Consensus 541 adn-pG~w~~HCHil~H~d~GM~~~~~~~~~ 570 (586)
++. +|.|.||||...|...||...|.+.++
T Consensus 86 ~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 86 ANQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp ESSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eeccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 988 999999999999988999999987764
No 40
>PLN02191 L-ascorbate oxidase
Probab=98.56 E-value=1.6e-06 Score=95.69 Aligned_cols=244 Identities=13% Similarity=0.140 Sum_probs=130.8
Q ss_pred eEEEEeCCcEEEEEEeecCCcceEEEEeCCCeeEE-EecCCccccceEEeEEEEccCceEEEEEEeCCCCCCceEEEEEe
Q 007890 243 YVITVIPGKTYRLRISSLTALSALSFQIEGHNMTV-VEADGHNVEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNI 321 (586)
Q Consensus 243 ~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~v-ia~DG~~~~P~~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~~~~ 321 (586)
++|+++.|+++++++.|.-......+|.||....- -..||.+ .+..-.|.||+.+...+++++ .|+||.+++.
T Consensus 54 P~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~----gvtq~pI~PG~s~~Y~f~~~~--~GT~wYHsH~ 127 (574)
T PLN02191 54 PTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAA----GVTQCAINPGETFTYKFTVEK--PGTHFYHGHY 127 (574)
T ss_pred CeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCC----ccccCCcCCCCeEEEEEECCC--CeEEEEeeCc
Confidence 58999999999999999865456888998876432 2357764 223356999999999999976 7999999875
Q ss_pred ecCCCCCCCCCeEEEEEecCCCCCCCCCCCCCCCCCcCCccccccccccccccCCCCCCCCCCCceEEEEEeeee-cCCC
Q 007890 322 VSRNATFTTPPGLAILNYYPNHPKRSPPTTPPSGPLWNDVGSRLNQSLAIKARKGFIIPPPQSADRMIVMLNTQN-NVSG 400 (586)
Q Consensus 322 ~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~g 400 (586)
.... .....+.|...+... +.. +. .++. +....+.+..- ...+. ....+..... ....
T Consensus 128 ~~q~----~~Gl~G~liV~~~~~---~~~--~~--~~d~-----e~~l~l~Dw~~--~~~~~---~~~~~~~~~~~~~~~ 186 (574)
T PLN02191 128 GMQR----SAGLYGSLIVDVAKG---PKE--RL--RYDG-----EFNLLLSDWWH--ESIPS---QELGLSSKPMRWIGE 186 (574)
T ss_pred HHHH----hCCCEEEEEEccCCC---CCC--CC--CCCe-----eEEEeeecccc--CChHH---HHHhhccCCCCcCCC
Confidence 3221 112233333332110 000 00 0110 00111111100 00000 0000000000 0000
Q ss_pred eEEEEEcCccccC-CCCchHHHhhhccccCCCCCCCCCCCCccccccccCcCCccccccceEEEecCCCEEEEEEecCCC
Q 007890 401 NVRWSVNKVTYTL-PHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRNGVYRLNFNSTVDIILQNANS 479 (586)
Q Consensus 401 ~~~~~iNg~~~~~-p~~p~l~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~ 479 (586)
.....|||+.-.. ..... ...+..+..+ . +. . +......++.++.|++++|+|+|.+.
T Consensus 187 ~d~~liNG~g~~~~~~~~~---~~~~~~~~~~--------~---~~-----~--n~~~~p~~~~v~~G~~yRlRiINa~~ 245 (574)
T PLN02191 187 AQSILINGRGQFNCSLAAQ---FSNGTELPMC--------T---FK-----E--GDQCAPQTLRVEPNKTYRIRLASTTA 245 (574)
T ss_pred CCceEECCCCCCCCccccc---ccCCcccccc--------e---ec-----c--CCCCCceEEEEcCCCEEEEEEEecCC
Confidence 1123455542100 00000 0000000000 0 00 0 00001115899999999999999876
Q ss_pred CCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEeCC-ce-eeEEee
Q 007890 480 LSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRADN-PG-AWAFHC 551 (586)
Q Consensus 480 ~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~adn-pG-~w~~HC 551 (586)
. ..+-|+|.||+|.|++.. |.+ ..|...|.+.|.+|++..|-++++. +| .|-++-
T Consensus 246 ~-----~~~~~~idgH~~tVIa~D-G~~-----------v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira 302 (574)
T PLN02191 246 L-----ASLNLAVQGHKLVVVEAD-GNY-----------ITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISV 302 (574)
T ss_pred c-----eeEEEEECCCeEEEEEcC-Cee-----------ccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEE
Confidence 5 378999999999999984 322 2577889999999999999999875 44 444443
No 41
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.54 E-value=1.6e-07 Score=79.88 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=46.3
Q ss_pred CCCCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccCCCCCeEEEEEEcCCCcceeeeccccc
Q 007890 69 RTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAHYGM 148 (586)
Q Consensus 69 ~~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H~~~ 148 (586)
++-...|+++.|+.|+|+++|. ...++.+...++.. ...|.||++.++.|...++|+|=|+|-...
T Consensus 31 ~f~P~~i~v~~G~~v~l~~~N~-~~~~h~~~i~~~~~-------------~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~ 96 (104)
T PF13473_consen 31 GFSPSTITVKAGQPVTLTFTNN-DSRPHEFVIPDLGI-------------SKVLPPGETATVTFTPLKPGEYEFYCTMHP 96 (104)
T ss_dssp EEES-EEEEETTCEEEEEEEE--SSS-EEEEEGGGTE-------------EEEE-TT-EEEEEEEE-S-EEEEEB-SSS-
T ss_pred eEecCEEEEcCCCeEEEEEEEC-CCCcEEEEECCCce-------------EEEECCCCEEEEEEcCCCCEEEEEEcCCCC
Confidence 3435689999999999999999 66665555544322 146899999999999999999999998544
Q ss_pred cccCcceEEEEE
Q 007890 149 QREAGLYGSIRV 160 (586)
Q Consensus 149 q~~~Gl~G~liV 160 (586)
. |.|.|+|
T Consensus 97 ---~-m~G~liV 104 (104)
T PF13473_consen 97 ---N-MKGTLIV 104 (104)
T ss_dssp ---T-TB-----
T ss_pred ---c-ceecccC
Confidence 2 7777775
No 42
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.45 E-value=7.2e-07 Score=75.09 Aligned_cols=84 Identities=24% Similarity=0.315 Sum_probs=58.4
Q ss_pred CCCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCcc--ccccCCCCCeEEEEEEcCCCcceeeecccc
Q 007890 70 TPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGV--TQCPILPGETFTYKFVVDRPGTYLYHAHYG 147 (586)
Q Consensus 70 ~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~--~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H~~ 147 (586)
|-...|++++||+| +++|. ...++++..+....... ..+..+.. +...+.||+++++.|.. +|+|+|+|-
T Consensus 14 F~P~~i~v~~G~~V--~~~N~-~~~~H~~~~~~~~~~~~-~~~~~~~~~~~~~~~~pG~t~~~tF~~--~G~y~y~C~-- 85 (99)
T TIGR02656 14 FEPAKISIAAGDTV--EWVNN-KGGPHNVVFDEDAVPAG-VKELAKSLSHKDLLNSPGESYEVTFST--PGTYTFYCE-- 85 (99)
T ss_pred EeCCEEEECCCCEE--EEEEC-CCCCceEEECCCCCccc-hhhhcccccccccccCCCCEEEEEeCC--CEEEEEEcC--
Confidence 44678999999986 55687 66778777664321100 00001111 22457899999998864 999999998
Q ss_pred ccccCcceEEEEEE
Q 007890 148 MQREAGLYGSIRVS 161 (586)
Q Consensus 148 ~q~~~Gl~G~liV~ 161 (586)
.+...||.|.|+|+
T Consensus 86 ~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 86 PHRGAGMVGKITVE 99 (99)
T ss_pred CccccCCEEEEEEC
Confidence 78889999999984
No 43
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.44 E-value=7.4e-06 Score=90.09 Aligned_cols=228 Identities=11% Similarity=0.106 Sum_probs=128.0
Q ss_pred eEEEEeCCcEEEEEEeecCCcceEEEEeCCCeeEE-EecCCccccceEEeEEEEccCceEEEEEEeCCCCCCceEEEEEe
Q 007890 243 YVITVIPGKTYRLRISSLTALSALSFQIEGHNMTV-VEADGHNVEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTNI 321 (586)
Q Consensus 243 ~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~v-ia~DG~~~~P~~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~~~~ 321 (586)
++|+++.|+++++++.|.-.. ...+|.||-.+.. -..||. |. ..-.|.||+++...+++++ ..|+||.+++.
T Consensus 60 PtI~~~~GD~v~V~V~N~L~~-~ttIHWHGl~q~~t~w~DGv---~~--TQcPI~PG~sftY~F~~~d-q~GT~WYHsH~ 132 (596)
T PLN00044 60 PALNVTTNWNLVVNVRNALDE-PLLLTWHGVQQRKSAWQDGV---GG--TNCAIPAGWNWTYQFQVKD-QVGSFFYAPST 132 (596)
T ss_pred CcEEEECCCEEEEEEEeCCCC-CccEEECCccCCCCccccCC---CC--CcCCcCCCCcEEEEEEeCC-CCceeEeeccc
Confidence 589999999999999998754 6888999876543 247996 33 3468999999999999963 37999999865
Q ss_pred ecCCCCCCCCCeEEEEEecCCCCCCCCCCCCCCCCCcCCccccccccccccccCCCCCCCCCCCceEEEEEeeeecCCCe
Q 007890 322 VSRNATFTTPPGLAILNYYPNHPKRSPPTTPPSGPLWNDVGSRLNQSLAIKARKGFIIPPPQSADRMIVMLNTQNNVSGN 401 (586)
Q Consensus 322 ~~~~~~~~~~~~~ail~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 401 (586)
..... . ...+-|...+....+ .| .+..++. +....+.+... .......+ .+..+. .....
T Consensus 133 ~~Q~~---~-Gl~GalII~~~~~~~-----~P-~~~~~~~----e~~i~l~DW~~---~~~~~~~~--~l~~g~-~~~~~ 192 (596)
T PLN00044 133 ALHRA---A-GGYGAITINNRDVIP-----IP-FGFPDGG----DITLFIADWYA---RDHRALRR--ALDAGD-LLGAP 192 (596)
T ss_pred hhhhh---C-cCeeEEEEcCccccc-----cc-ccCCccc----ceEEEeccccc---CCHHHHHH--HHhcCC-CCCCC
Confidence 32211 1 223333333211100 00 0000000 00000111000 00000000 000000 00000
Q ss_pred EEEEEcCccccCCCCchHHHhhhccccCCCCCCCCCCCCccccccccCcCCccccccceEEEecCCCEEEEEEecCCCCC
Q 007890 402 VRWSVNKVTYTLPHIPYLIALKENITSAFDQTPPPDGYDFKNYDIFSVAENKSYTIRNGVYRLNFNSTVDIILQNANSLS 481 (586)
Q Consensus 402 ~~~~iNg~~~~~p~~p~l~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~ 481 (586)
....|||+.-.. .++.. ..+. ....++.++.|++++|+|+|.+..
T Consensus 193 d~~lING~g~~~------------~n~~~---~~~~-------------------~~~~~i~V~~Gk~yRlRiINaa~~- 237 (596)
T PLN00044 193 DGVLINAFGPYQ------------YNDSL---VPPG-------------------ITYERINVDPGKTYRFRVHNVGVA- 237 (596)
T ss_pred CceEEcccCccc------------cCCcc---ccCC-------------------CccceEEECCCCEEEEEEEEccCC-
Confidence 011234331000 00000 0000 001248999999999999998754
Q ss_pred CCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEeCCc-e--eeE
Q 007890 482 NKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRADNP-G--AWA 548 (586)
Q Consensus 482 ~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~adnp-G--~w~ 548 (586)
...-|+|-||+|.|++.. |.+ ..|..-|.+.|.+|++..+-++++.+ | .||
T Consensus 238 ----~~~~fsIdgH~mtVIa~D-G~~-----------v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i 291 (596)
T PLN00044 238 ----TSLNFRIQGHNLLLVEAE-GSY-----------TSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYV 291 (596)
T ss_pred ----ceEEEEECCCEEEEEEeC-Ccc-----------cCceeeeeEEEcCCceEEEEEECCCCCCCceEE
Confidence 378899999999999984 433 35778899999999999999999864 5 466
No 44
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.23 E-value=3e-06 Score=71.33 Aligned_cols=80 Identities=29% Similarity=0.446 Sum_probs=55.9
Q ss_pred CCCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCC------ccccccCCCCCeEEEEEEcCCCcceeee
Q 007890 70 TPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTE------GVTQCPILPGETFTYKFVVDRPGTYLYH 143 (586)
Q Consensus 70 ~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~------~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH 143 (586)
|-.+.|++++||+|+ +.|. ...++++.+=-- .+..|.. ......+.||+++++.|+ ++|+|.|+
T Consensus 14 F~P~~i~V~~G~tV~--~~n~-~~~~Hnv~~~~~-----~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~--~~G~y~y~ 83 (99)
T PF00127_consen 14 FDPSEITVKAGDTVT--FVNN-DSMPHNVVFVAD-----GMPAGADSDYVPPGDSSPLLAPGETYSVTFT--KPGTYEYY 83 (99)
T ss_dssp EESSEEEEETTEEEE--EEEE-SSSSBEEEEETT-----SSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE--SSEEEEEE
T ss_pred EeCCEEEECCCCEEE--EEEC-CCCCceEEEecc-----cccccccccccCccccceecCCCCEEEEEeC--CCeEEEEE
Confidence 446789999999864 5665 455666665321 1101110 002235789999999997 99999999
Q ss_pred ccccccccCcceEEEEEE
Q 007890 144 AHYGMQREAGLYGSIRVS 161 (586)
Q Consensus 144 ~H~~~q~~~Gl~G~liV~ 161 (586)
|- . |...||.|.|+|+
T Consensus 84 C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 84 CT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp ET-T-TGGTTSEEEEEEE
T ss_pred cC-C-CcccCCEEEEEEC
Confidence 98 4 8889999999995
No 45
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.09 E-value=0.00066 Score=74.20 Aligned_cols=81 Identities=15% Similarity=0.147 Sum_probs=66.1
Q ss_pred eEEEEeCCcEEEEEEeecCCc--ceEEEEeCCCeeEEEecC-Ccc------------ccceEEeEEEEccCceEEEEEEe
Q 007890 243 YVITVIPGKTYRLRISSLTAL--SALSFQIEGHNMTVVEAD-GHN------------VEPFVVQNLFIYSGETYSVLIKA 307 (586)
Q Consensus 243 ~~~~v~~G~~~rlRliN~g~~--~~~~~~i~gh~~~via~D-G~~------------~~P~~~~~l~l~pGqR~dVlv~~ 307 (586)
..+.++-++.+.+=|-|.+.. ..|.+|+|||.|.||+.+ |+. ..|+..+++.|.||.-.-+.+.+
T Consensus 430 ~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~a 509 (563)
T KOG1263|consen 430 SVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVA 509 (563)
T ss_pred eEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEc
Confidence 467888899999888898865 347789999999999994 322 23677899999999999999999
Q ss_pred CCCCCCceEEEEEeecCC
Q 007890 308 DQNPTRNYWATTNIVSRN 325 (586)
Q Consensus 308 ~~~~~g~y~l~~~~~~~~ 325 (586)
+. +|-+-|+++.....
T Consensus 510 dN--PG~W~~HCHie~H~ 525 (563)
T KOG1263|consen 510 DN--PGVWLMHCHIEDHL 525 (563)
T ss_pred CC--CcEEEEEEecHHHH
Confidence 98 89899999876554
No 46
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.07 E-value=1e-05 Score=74.49 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=72.8
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEE
Q 007890 461 VYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFR 540 (586)
Q Consensus 461 ~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~ 540 (586)
++.++.|++++|+|+|.+.. ..+.|++.||.|+|++.. |.+ ..|...|++.|.+|+.+.|-++
T Consensus 61 ~~~v~~g~~~rlRliNa~~~-----~~~~~~i~gh~~~Via~D-G~~-----------v~p~~~~~l~l~~G~R~dvlv~ 123 (159)
T PF00394_consen 61 VIKVKPGERYRLRLINAGAS-----TSFNFSIDGHPMTVIAAD-GVP-----------VEPYKVDTLVLAPGQRYDVLVT 123 (159)
T ss_dssp EEEEETTTEEEEEEEEESSS------BEEEEETTBCEEEEEET-TEE-----------EEEEEESBEEE-TTEEEEEEEE
T ss_pred eEEEcCCcEEEEEEEeccCC-----eeEEEEeeccceeEeeec-ccc-----------ccccccceEEeeCCeEEEEEEE
Confidence 48999999999999998764 379999999999999983 322 1277889999999999999999
Q ss_pred eCC-ceeeEEee----cchhhhhcCceEEEe
Q 007890 541 ADN-PGAWAFHC----HIESHFYMGMGVVFA 566 (586)
Q Consensus 541 adn-pG~w~~HC----Hil~H~d~GM~~~~~ 566 (586)
++. +|.|.++| +...+...|+..-+.
T Consensus 124 ~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL 154 (159)
T PF00394_consen 124 ADQPPGNYWIRASYQHDSINDPQNGNALAIL 154 (159)
T ss_dssp ECSCSSEEEEEEEESSSSSHSHGGGTTEEEE
T ss_pred eCCCCCeEEEEEecccCCCccCCCcEEEEEE
Confidence 987 99999999 556677777766553
No 47
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.98 E-value=3e-05 Score=62.90 Aligned_cols=76 Identities=20% Similarity=0.261 Sum_probs=51.3
Q ss_pred CCCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccCCCCCeEEEEEEcCCCcceeeecccccc
Q 007890 70 TPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAHYGMQ 149 (586)
Q Consensus 70 ~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H~~~q 149 (586)
|-.+.|++++||+|. ++|. ...+++++...-. ++........+.||+++++.| .++|+|-|||-...
T Consensus 8 F~P~~i~v~~GdtVt--~~N~-d~~~Hnv~~~~g~-------~~~~~~~~~~~~~g~~~~~tf--~~~G~y~y~C~~Hp- 74 (83)
T TIGR02657 8 YETPELHVKVGDTVT--WINR-EAMPHNVHFVAGV-------LGEAALKGPMMKKEQAYSLTF--TEAGTYDYHCTPHP- 74 (83)
T ss_pred EcCCEEEECCCCEEE--EEEC-CCCCccEEecCCC-------CccccccccccCCCCEEEEEC--CCCEEEEEEcCCCC-
Confidence 346789999999975 5788 5677888765421 110000112357888888766 68999999996322
Q ss_pred ccCcceEEEEEE
Q 007890 150 REAGLYGSIRVS 161 (586)
Q Consensus 150 ~~~Gl~G~liV~ 161 (586)
+|.|.++|+
T Consensus 75 ---~M~G~v~V~ 83 (83)
T TIGR02657 75 ---FMRGKVVVE 83 (83)
T ss_pred ---CCeEEEEEC
Confidence 499999985
No 48
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.95 E-value=3.3e-05 Score=69.74 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=57.6
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCC---C--CEE
Q 007890 461 VYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHR---Y--GWT 535 (586)
Q Consensus 461 ~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp---~--g~v 535 (586)
.+.++.|+.|++++.|.+.. ..|.|-||.+.-. +......+.. +..-..-.+|+ + ++.
T Consensus 53 ~I~v~~Gd~V~v~v~N~~~~-----~~H~~~I~~~g~~--------~~~~p~mdG~----~~~~~~~i~p~~~~g~~~~~ 115 (148)
T TIGR03095 53 TIVIPEGVTVHFTVINTDTD-----SGHNFDISKRGPP--------YPYMPGMDGL----GFVAGTGFLPPPKSGKFGYT 115 (148)
T ss_pred EEEEcCCCEEEEEEEeCCCC-----ccccEEeecCCCc--------cccccccCCC----CccccCcccCCCCCCcccee
Confidence 38999999999999997642 2677777643221 1000000000 11111112232 2 246
Q ss_pred EEEEEeCCceeeEEeecchhhhhcCceEEEec
Q 007890 536 ALRFRADNPGAWAFHCHIESHFYMGMGVVFAE 567 (586)
Q Consensus 536 ~irf~adnpG~w~~HCHil~H~d~GM~~~~~~ 567 (586)
.+.|+++.+|.+.||||+..|...||...+.+
T Consensus 116 ~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV 147 (148)
T TIGR03095 116 DFTYHFSTAGTYWYLCTYPGHAENGMYGKIVV 147 (148)
T ss_pred EEEEECCCCeEEEEEcCChhHHHCCCEEEEEE
Confidence 78888889999999999999999999988865
No 49
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.95 E-value=0.00017 Score=65.29 Aligned_cols=98 Identities=21% Similarity=0.180 Sum_probs=73.1
Q ss_pred EEEECCCCCC-CcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccC--C-----CCCCCC----ccc-----cccCCCC
Q 007890 63 VITINGRTPG-PTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGT--P-----WADGTE----GVT-----QCPILPG 125 (586)
Q Consensus 63 ~~~~Ng~~pg-P~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~--~-----~~DGv~----~~~-----q~~i~pG 125 (586)
.+-|||+..| ++|.+..|=.|.|+|+|. ...++++-. -+.++ + ..||.. |.+ -..|.+|
T Consensus 74 ~fNfnGts~G~mtIyiPaGw~V~V~f~N~-e~~pHnl~i---v~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~G 149 (195)
T TIGR03094 74 PFNFNGTSYGAMTIYLPAGWNVYVTFTNY-ESLPHNLKL---LPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSG 149 (195)
T ss_pred cccccCccCCceEEEEeCCCEEEEEEEcC-CCCCccEEE---ecCCCCCCCccccccCceeEeecccccCcccccccccc
Confidence 3677888777 899999999999999999 677765544 22222 1 135533 111 1345678
Q ss_pred CeEEEEEEcCCCcceeeeccccccccCcceEEEEEECCC
Q 007890 126 ETFTYKFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPE 164 (586)
Q Consensus 126 ~~~~Y~f~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 164 (586)
++..-.|..-++|+|||-|-...|-.+||+|-+||...-
T Consensus 150 qs~sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs~v 188 (195)
T TIGR03094 150 HSRSGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSSNV 188 (195)
T ss_pred ceeEEEeccCCCeeEEEEcccCChhhcCcEEEEEEecCc
Confidence 886666776899999999999999999999999998753
No 50
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.92 E-value=4.9e-05 Score=82.52 Aligned_cols=96 Identities=21% Similarity=0.299 Sum_probs=68.0
Q ss_pred CCCCcee--EEEEECCCCCCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccCCCCCeEEEEE
Q 007890 55 SPDCFRK--VVITINGRTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKF 132 (586)
Q Consensus 55 ~~dg~~~--~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f 132 (586)
..+|.+. ++.+..-.|--+.|+|++||.|+++|+|.-..+..+ ||....+. |+ ..-+.||++.+..|
T Consensus 535 ~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi---HGF~Ip~~----nI----~~dv~PG~t~svtF 603 (635)
T PRK02888 535 IRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT---HGFAIPNY----GV----NMEVAPQATASVTF 603 (635)
T ss_pred EEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc---cceeeccc----Cc----cEEEcCCceEEEEE
Confidence 3455443 445555566566799999999999999952212222 66655321 11 23578999999999
Q ss_pred EcCCCcceeeeccc---cccccCcceEEEEEECC
Q 007890 133 VVDRPGTYLYHAHY---GMQREAGLYGSIRVSLP 163 (586)
Q Consensus 133 ~~~~~Gt~wYH~H~---~~q~~~Gl~G~liV~~~ 163 (586)
+++++|+|||||.. ..| .+|.|-|+|+++
T Consensus 604 ~adkPGvy~~~CtefCGa~H--~~M~G~~iVep~ 635 (635)
T PRK02888 604 TADKPGVYWYYCTWFCHALH--MEMRGRMLVEPK 635 (635)
T ss_pred EcCCCEEEEEECCcccccCc--ccceEEEEEEeC
Confidence 99999999999982 334 489999999863
No 51
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.80 E-value=0.00021 Score=62.07 Aligned_cols=76 Identities=25% Similarity=0.353 Sum_probs=53.8
Q ss_pred CCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccCCCCCeEEEEEEcCCCcceeeecccccccc
Q 007890 72 GPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAHYGMQRE 151 (586)
Q Consensus 72 gP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H~~~q~~ 151 (586)
.-.|++++||+ |++.|. ....++++.-+.-. + +|.- .....+|+++++.| +.+|+|-|+|- .|+.
T Consensus 53 PA~v~v~pGDT--Vtw~~~-d~~~Hnv~~~~~~~---~--~g~~---~~~~~~~~s~~~Tf--e~~G~Y~Y~C~--PH~~ 117 (128)
T COG3794 53 PAEVTVKPGDT--VTWVNT-DSVGHNVTAVGGMD---P--EGSG---TLKAGINESFTHTF--ETPGEYTYYCT--PHPG 117 (128)
T ss_pred CcEEEECCCCE--EEEEEC-CCCCceEEEeCCCC---c--cccc---ccccCCCcceEEEe--cccceEEEEec--cCCC
Confidence 45799999999 567787 45577776554421 1 2221 13345568888777 55999999997 6788
Q ss_pred CcceEEEEEEC
Q 007890 152 AGLYGSIRVSL 162 (586)
Q Consensus 152 ~Gl~G~liV~~ 162 (586)
+||.|.|+|++
T Consensus 118 ~gM~G~IvV~~ 128 (128)
T COG3794 118 MGMKGKIVVGE 128 (128)
T ss_pred CCcEEEEEeCC
Confidence 99999999964
No 52
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.77 E-value=0.00021 Score=66.14 Aligned_cols=101 Identities=20% Similarity=0.165 Sum_probs=73.8
Q ss_pred EEEECCCCCC-CcEEeecCCEEEEEEEeCCCCCCeeEEec--ceeec--cCCCCCCCC----cc-----ccccCCCCCeE
Q 007890 63 VITINGRTPG-PTIQARQNDTVIVELKNSLLTENVAIHWH--GIRQI--GTPWADGTE----GV-----TQCPILPGETF 128 (586)
Q Consensus 63 ~~~~Ng~~pg-P~i~v~~Gd~v~i~v~N~l~~~~~siH~H--Gl~~~--~~~~~DGv~----~~-----~q~~i~pG~~~ 128 (586)
.+-|||..-| ++|.+..|-+|.|+|+|. ...++++-.= +-.++ ..-..||.. +. ....|.+|++.
T Consensus 75 ~~nfnGts~G~m~i~VPAGw~V~i~f~N~-~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~ 153 (196)
T PF06525_consen 75 PFNFNGTSNGQMTIYVPAGWNVQITFTNQ-ESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSA 153 (196)
T ss_pred ceeeecccCCcEEEEEcCCCEEEEEEEcC-CCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCcee
Confidence 5678887666 899999999999999998 6665554322 11000 112335522 11 12478899999
Q ss_pred EEEEEcCCCcceeeeccccccccCcceEEEEEECCC
Q 007890 129 TYKFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPE 164 (586)
Q Consensus 129 ~Y~f~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 164 (586)
.-.|..-++|+|||-|-...|...||++-|+|...-
T Consensus 154 ~~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~v 189 (196)
T PF06525_consen 154 SGVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSSNV 189 (196)
T ss_pred eEEEccCCCceEEEEccCCChhhcCCEEEEEEecCc
Confidence 878877889999999999999999999999998753
No 53
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.57 E-value=0.00036 Score=60.07 Aligned_cols=78 Identities=21% Similarity=0.246 Sum_probs=52.4
Q ss_pred CCCCcEEeecCCEEEEEEEeCCCCCCeeEEe-cceeeccCCCCCCCCccccccCCCCCeEEEEEEcCCCcceeeeccccc
Q 007890 70 TPGPTIQARQNDTVIVELKNSLLTENVAIHW-HGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAHYGM 148 (586)
Q Consensus 70 ~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~-HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H~~~ 148 (586)
|-...|+|++||+|+....|. ++++.+ .+. .-+|... ..-.+|+++++.| +++|+|=|+|- .
T Consensus 12 F~P~~v~V~~GdTV~f~n~d~----~Hnv~~~~~~------~p~g~~~---~~s~~g~~~~~tF--~~~G~Y~Y~C~--p 74 (116)
T TIGR02375 12 FEPAYIRAAPGDTVTFVPTDK----GHNVETIKGM------IPEGAEA---FKSKINEEYTVTV--TEEGVYGVKCT--P 74 (116)
T ss_pred EeCCEEEECCCCEEEEEECCC----CeeEEEccCC------CcCCccc---ccCCCCCEEEEEe--CCCEEEEEEcC--C
Confidence 335689999999977665554 455443 121 1122221 1224577666666 68999999998 7
Q ss_pred cccCcceEEEEEECCC
Q 007890 149 QREAGLYGSIRVSLPE 164 (586)
Q Consensus 149 q~~~Gl~G~liV~~~~ 164 (586)
|...||.|.|+|.++.
T Consensus 75 H~~~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 75 HYGMGMVALIQVGDPP 90 (116)
T ss_pred CccCCCEEEEEECCCC
Confidence 8889999999998753
No 54
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.49 E-value=0.00047 Score=60.38 Aligned_cols=58 Identities=14% Similarity=0.379 Sum_probs=48.7
Q ss_pred EEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEe
Q 007890 462 YRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRA 541 (586)
Q Consensus 462 ~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~a 541 (586)
+.++.|+.|+|.+.|.+.. .|.|-++++.+ ...|+||+..+++|.+
T Consensus 63 I~VkaGD~Vtl~vtN~d~~------~H~f~i~~~gi----------------------------s~~I~pGet~TitF~a 108 (135)
T TIGR03096 63 LVVKKGTPVKVTVENKSPI------SEGFSIDAYGI----------------------------SEVIKAGETKTISFKA 108 (135)
T ss_pred EEECCCCEEEEEEEeCCCC------ccceEECCCCc----------------------------ceEECCCCeEEEEEEC
Confidence 8999999999999998765 78777766521 2367889999999999
Q ss_pred CCceeeEEeecc
Q 007890 542 DNPGAWAFHCHI 553 (586)
Q Consensus 542 dnpG~w~~HCHi 553 (586)
+-||.|.|||-+
T Consensus 109 dKpG~Y~y~C~~ 120 (135)
T TIGR03096 109 DKAGAFTIWCQL 120 (135)
T ss_pred CCCEEEEEeCCC
Confidence 999999999974
No 55
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.47 E-value=0.00042 Score=58.24 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=56.3
Q ss_pred EEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEe
Q 007890 462 YRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRA 541 (586)
Q Consensus 462 ~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~a 541 (586)
+.++.|++|+|+ |.+.. .|-+.++.-.+..-. .. .......+++.+.||....+.|..
T Consensus 19 i~v~~G~~V~~~--N~~~~------~H~~~~~~~~~~~~~-----~~---------~~~~~~~~~~~~~pG~t~~~tF~~ 76 (99)
T TIGR02656 19 ISIAAGDTVEWV--NNKGG------PHNVVFDEDAVPAGV-----KE---------LAKSLSHKDLLNSPGESYEVTFST 76 (99)
T ss_pred EEECCCCEEEEE--ECCCC------CceEEECCCCCccch-----hh---------hcccccccccccCCCCEEEEEeCC
Confidence 899999999887 65544 787776543221100 00 001123467888999998887765
Q ss_pred CCceeeEEeecchhhhhcCceEEEec
Q 007890 542 DNPGAWAFHCHIESHFYMGMGVVFAE 567 (586)
Q Consensus 542 dnpG~w~~HCHil~H~d~GM~~~~~~ 567 (586)
||.|.|||- -|...||...+.+
T Consensus 77 --~G~y~y~C~--~H~~aGM~G~I~V 98 (99)
T TIGR02656 77 --PGTYTFYCE--PHRGAGMVGKITV 98 (99)
T ss_pred --CEEEEEEcC--CccccCCEEEEEE
Confidence 999999998 8999999998865
No 56
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.44 E-value=0.0008 Score=57.80 Aligned_cols=77 Identities=22% Similarity=0.323 Sum_probs=52.5
Q ss_pred CCCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccCCCCCeEEEEEEcCCCcceeeecccccc
Q 007890 70 TPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAHYGMQ 149 (586)
Q Consensus 70 ~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H~~~q 149 (586)
|-.+.|+|++||+|+ ++|+....++++..-+ +..+ | .......+|++|+|.| .++|+|=|+|- .|
T Consensus 39 F~P~~ltV~~GdTVt--w~~~~d~~~HnV~s~~----~~~f-~----s~~~~~~~G~t~s~Tf--~~~G~Y~Y~C~--pH 103 (115)
T TIGR03102 39 FDPPAIRVDPGTTVV--WEWTGEGGGHNVVSDG----DGDL-D----ESERVSEEGTTYEHTF--EEPGIYLYVCV--PH 103 (115)
T ss_pred EeCCEEEECCCCEEE--EEECCCCCCEEEEECC----CCCc-c----ccccccCCCCEEEEEe--cCCcEEEEEcc--CC
Confidence 445679999999966 6654234566665310 0111 1 0112357899999999 68999999997 56
Q ss_pred ccCcceEEEEEE
Q 007890 150 REAGLYGSIRVS 161 (586)
Q Consensus 150 ~~~Gl~G~liV~ 161 (586)
...||.|.|+|+
T Consensus 104 ~~~gM~G~I~V~ 115 (115)
T TIGR03102 104 EALGMKGAVVVE 115 (115)
T ss_pred CCCCCEEEEEEC
Confidence 678999999984
No 57
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.78 E-value=0.0051 Score=52.14 Aligned_cols=67 Identities=15% Similarity=0.258 Sum_probs=43.4
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEE
Q 007890 461 VYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFR 540 (586)
Q Consensus 461 ~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~ 540 (586)
.+.++.|+.+.+++.|.+.. .|-|.+-+. .-...|+||+...+.|.
T Consensus 36 ~i~v~~G~~v~l~~~N~~~~------~h~~~i~~~----------------------------~~~~~l~~g~~~~~~f~ 81 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDSR------PHEFVIPDL----------------------------GISKVLPPGETATVTFT 81 (104)
T ss_dssp EEEEETTCEEEEEEEE-SSS-------EEEEEGGG----------------------------TEEEEE-TT-EEEEEEE
T ss_pred EEEEcCCCeEEEEEEECCCC------cEEEEECCC----------------------------ceEEEECCCCEEEEEEc
Confidence 38999999999999998765 455544441 12267889999999999
Q ss_pred eCCceeeEEeecchhhhhcCce
Q 007890 541 ADNPGAWAFHCHIESHFYMGMG 562 (586)
Q Consensus 541 adnpG~w~~HCHil~H~d~GM~ 562 (586)
++.||.|-|+|-+-.+ ..|..
T Consensus 82 ~~~~G~y~~~C~~~~~-m~G~l 102 (104)
T PF13473_consen 82 PLKPGEYEFYCTMHPN-MKGTL 102 (104)
T ss_dssp E-S-EEEEEB-SSS-T-TB---
T ss_pred CCCCEEEEEEcCCCCc-ceecc
Confidence 9999999999996554 45544
No 58
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.32 E-value=0.016 Score=48.56 Aligned_cols=80 Identities=16% Similarity=0.254 Sum_probs=52.8
Q ss_pred EEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEe
Q 007890 462 YRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRA 541 (586)
Q Consensus 462 ~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~a 541 (586)
+.++.|++|.|+.. +.+ .|.+++ .. +......+.... +..-.+..+.+|....+.|.
T Consensus 19 i~V~~G~tV~~~n~--~~~------~Hnv~~-------~~---~~~~~~~~~~~~----~~~~~~~~~~~G~~~~~tF~- 75 (99)
T PF00127_consen 19 ITVKAGDTVTFVNN--DSM------PHNVVF-------VA---DGMPAGADSDYV----PPGDSSPLLAPGETYSVTFT- 75 (99)
T ss_dssp EEEETTEEEEEEEE--SSS------SBEEEE-------ET---TSSHTTGGHCHH----STTCEEEEBSTTEEEEEEEE-
T ss_pred EEECCCCEEEEEEC--CCC------CceEEE-------ec---cccccccccccc----CccccceecCCCCEEEEEeC-
Confidence 89999999998765 333 555543 22 111110000000 01116677888888888876
Q ss_pred CCceeeEEeecchhhhhcCceEEEec
Q 007890 542 DNPGAWAFHCHIESHFYMGMGVVFAE 567 (586)
Q Consensus 542 dnpG~w~~HCHil~H~d~GM~~~~~~ 567 (586)
.+|.|.|+|- - |...||-..+.|
T Consensus 76 -~~G~y~y~C~-P-H~~~GM~G~i~V 98 (99)
T PF00127_consen 76 -KPGTYEYYCT-P-HYEAGMVGTIIV 98 (99)
T ss_dssp -SSEEEEEEET-T-TGGTTSEEEEEE
T ss_pred -CCeEEEEEcC-C-CcccCCEEEEEE
Confidence 9999999999 5 999999998865
No 59
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.95 E-value=0.027 Score=61.77 Aligned_cols=78 Identities=19% Similarity=0.285 Sum_probs=55.7
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEE
Q 007890 461 VYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFR 540 (586)
Q Consensus 461 ~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~ 540 (586)
.+.++.|+.|.+.+.|.+.. ....|-|-+-++... +.+.||....+.|+
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~---~DViHGF~Ip~~nI~----------------------------~dv~PG~t~svtF~ 604 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKV---EDLTHGFAIPNYGVN----------------------------MEVAPQATASVTFT 604 (635)
T ss_pred eEEecCCCEEEEEEEeCCcc---cccccceeecccCcc----------------------------EEEcCCceEEEEEE
Confidence 37899999999999996432 122677776444321 24568899999999
Q ss_pred eCCceeeEEeecchhhhh-cCceEEEeccc
Q 007890 541 ADNPGAWAFHCHIESHFY-MGMGVVFAEGI 569 (586)
Q Consensus 541 adnpG~w~~HCHil~H~d-~GM~~~~~~~~ 569 (586)
++.||.|.+||...-|.. .+|...+.|.+
T Consensus 605 adkPGvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 605 ADKPGVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred cCCCEEEEEECCcccccCcccceEEEEEEe
Confidence 999999999999743321 26777776644
No 60
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=95.87 E-value=0.058 Score=46.95 Aligned_cols=74 Identities=19% Similarity=0.251 Sum_probs=51.1
Q ss_pred CCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccCCCCCeEEEEEEcCCCcceeeecc-ccccc
Q 007890 72 GPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAH-YGMQR 150 (586)
Q Consensus 72 gP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H-~~~q~ 150 (586)
.+.|.++.|+.|++.+++. +.-+++...++.. +.-+.||+.....|+++++|+|++.|. .-...
T Consensus 45 ~~~l~lp~g~~v~~~ltS~--DViHsf~ip~~~~-------------k~d~~PG~~~~~~~~~~~~G~y~~~C~e~CG~g 109 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE--DVIHSFWIPELGI-------------KMDAIPGRTNSVTFTPDKPGTYYGQCAEYCGAG 109 (120)
T ss_dssp SSEEEEETTSEEEEEEEES--SS-EEEEETTCTE-------------EEEEBTTCEEEEEEEESSSEEEEEEE-SSSSTT
T ss_pred cceecccccceEeEEEEcC--CccccccccccCc-------------ccccccccceeeeeeeccCCcEEEcCccccCcC
Confidence 4689999999999999998 4444443333321 245689999999999999999999997 22222
Q ss_pred cCcceEEEEE
Q 007890 151 EAGLYGSIRV 160 (586)
Q Consensus 151 ~~Gl~G~liV 160 (586)
-.-|.|-++|
T Consensus 110 H~~M~~~v~V 119 (120)
T PF00116_consen 110 HSFMPGKVIV 119 (120)
T ss_dssp GGG-EEEEEE
T ss_pred cCCCeEEEEE
Confidence 2346666665
No 61
>PRK02710 plastocyanin; Provisional
Probab=95.70 E-value=0.045 Score=47.59 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=49.9
Q ss_pred EEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEe
Q 007890 462 YRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRA 541 (586)
Q Consensus 462 ~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~a 541 (586)
+.++.|++|+|+ |.+.. .|.+.+.+... + ..+| ..+.+|....+.|..
T Consensus 49 i~v~~Gd~V~~~--N~~~~------~H~v~~~~~~~---------~--------------~~~~-~~~~pg~t~~~tF~~ 96 (119)
T PRK02710 49 LTIKAGDTVKWV--NNKLA------PHNAVFDGAKE---------L--------------SHKD-LAFAPGESWEETFSE 96 (119)
T ss_pred EEEcCCCEEEEE--ECCCC------CceEEecCCcc---------c--------------cccc-cccCCCCEEEEEecC
Confidence 899999999886 55544 78776542210 0 0111 346788887777764
Q ss_pred CCceeeEEeecchhhhhcCceEEEec
Q 007890 542 DNPGAWAFHCHIESHFYMGMGVVFAE 567 (586)
Q Consensus 542 dnpG~w~~HCHil~H~d~GM~~~~~~ 567 (586)
||.|.|+|= -|...||-..+.|
T Consensus 97 --~G~y~y~C~--~H~~~gM~G~I~V 118 (119)
T PRK02710 97 --AGTYTYYCE--PHRGAGMVGKITV 118 (119)
T ss_pred --CEEEEEEcC--CCccCCcEEEEEE
Confidence 999999997 8999999998865
No 62
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.34 E-value=0.3 Score=43.62 Aligned_cols=89 Identities=20% Similarity=0.215 Sum_probs=65.1
Q ss_pred CCCCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeec-----------cCCCCCCCCccccccCCCCCeEEEEEEcCCC
Q 007890 69 RTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQI-----------GTPWADGTEGVTQCPILPGETFTYKFVVDRP 137 (586)
Q Consensus 69 ~~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~-----------~~~~~DGv~~~~q~~i~pG~~~~Y~f~~~~~ 137 (586)
.+++-.+.++.|++++..+.|. .. ..|=-.+..+ -.+.+++-- .....+.||++-+..|...++
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~-~e---l~hef~~~~~~~~~~~~~~~~~~~Dme~d~-~~~v~L~PG~s~elvv~ft~~ 133 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNE-GE---LKHEFTMDAPDKNLEHVTHMILADDMEHDD-PNTVTLAPGKSGELVVVFTGA 133 (158)
T ss_pred ccCCCcccccCCcEEeeeecCc-cc---ceEEEeccCccccchhHHHhhhCCccccCC-cceeEeCCCCcEEEEEEecCC
Confidence 3677889999999999999997 32 1221122110 112233321 123578999999999999999
Q ss_pred cceeeeccccccccCcceEEEEEEC
Q 007890 138 GTYLYHAHYGMQREAGLYGSIRVSL 162 (586)
Q Consensus 138 Gt~wYH~H~~~q~~~Gl~G~liV~~ 162 (586)
|.|-+-|-...++..||.|-|.|.+
T Consensus 134 g~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 134 GKYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred ccEEEEecCCCcccCCcEEEEEeCC
Confidence 9999999999999999999999864
No 63
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.00 E-value=0.083 Score=47.11 Aligned_cols=94 Identities=18% Similarity=0.190 Sum_probs=66.1
Q ss_pred EEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEe
Q 007890 462 YRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRA 541 (586)
Q Consensus 462 ~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~a 541 (586)
+.++.|++++.++.|.... -|=|=+- ++.... +.+... ....-..-.-..++.|-||....+-+++
T Consensus 65 ~~v~aG~tv~~v~~n~~el------~hef~~~---~~~~~~--~~~~~~---~~~~Dme~d~~~~v~L~PG~s~elvv~f 130 (158)
T COG4454 65 FEVKAGETVRFVLKNEGEL------KHEFTMD---APDKNL--EHVTHM---ILADDMEHDDPNTVTLAPGKSGELVVVF 130 (158)
T ss_pred ccccCCcEEeeeecCcccc------eEEEecc---Cccccc--hhHHHh---hhCCccccCCcceeEeCCCCcEEEEEEe
Confidence 7889999999999998776 4554433 221111 011100 0000111234578999999999999999
Q ss_pred CCceeeEEeecchhhhhcCceEEEeccc
Q 007890 542 DNPGAWAFHCHIESHFYMGMGVVFAEGI 569 (586)
Q Consensus 542 dnpG~w~~HCHil~H~d~GM~~~~~~~~ 569 (586)
.++|.+-|-|-|-+|-+.||-..|-+.+
T Consensus 131 t~~g~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 131 TGAGKYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred cCCccEEEEecCCCcccCCcEEEEEeCC
Confidence 9999999999999999999999887653
No 64
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=94.54 E-value=0.43 Score=49.63 Aligned_cols=79 Identities=14% Similarity=0.129 Sum_probs=53.7
Q ss_pred CCCCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCC-ccccccCCCCCeEEEEEEcCCCcceeeecccc
Q 007890 69 RTPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTE-GVTQCPILPGETFTYKFVVDRPGTYLYHAHYG 147 (586)
Q Consensus 69 ~~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~-~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H~~ 147 (586)
++-...+.++.|+ +.+.|+|. ...++.+-.- +|+- .-..-.|.||.+.++.++. .+|+|=|+|-
T Consensus 40 ~c~p~~~tVpAG~-~~f~V~N~-~~~~~Efe~~----------~~~~vv~e~EnIaPG~s~~l~~~L-~pGtY~~~C~-- 104 (375)
T PRK10378 40 QCEPMTLTVNAGK-TQFIIQNH-SQKALEWEIL----------KGVMVVEERENIAPGFSQKMTANL-QPGEYDMTCG-- 104 (375)
T ss_pred ccccCceeeCCCC-EEEEEEeC-CCCcceEEee----------ccccccccccccCCCCceEEEEec-CCceEEeecC--
Confidence 4556789999996 89999999 6655332111 1110 0011369999998887766 7999999993
Q ss_pred ccccCcceEEEEEECCC
Q 007890 148 MQREAGLYGSIRVSLPE 164 (586)
Q Consensus 148 ~q~~~Gl~G~liV~~~~ 164 (586)
.+ ..+.|.|+|.+..
T Consensus 105 ~~--~~~~g~l~Vtg~~ 119 (375)
T PRK10378 105 LL--TNPKGKLIVKGEA 119 (375)
T ss_pred cC--CCCCceEEEeCCC
Confidence 33 3358999998753
No 65
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=94.21 E-value=0.33 Score=46.40 Aligned_cols=78 Identities=15% Similarity=0.123 Sum_probs=57.2
Q ss_pred CCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccCCCCCeEEEEEEcCCCcceeeecc-ccccc
Q 007890 72 GPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAH-YGMQR 150 (586)
Q Consensus 72 gP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H-~~~q~ 150 (586)
...|.+..|+.|++++++. +.- ||...+. -|+ +.-+-||..-+..|+++++|+|...|. .-...
T Consensus 116 ~~~l~vp~g~~v~~~~ts~--DV~-----Hsf~ip~----~~~----k~da~PG~~~~~~~~~~~~G~y~~~c~e~cG~~ 180 (201)
T TIGR02866 116 VNELVVPAGTPVRLQVTSK--DVI-----HSFWVPE----LGG----KIDAIPGQYNALWFNADEPGVYYGYCAELCGAG 180 (201)
T ss_pred cCEEEEEcCCEEEEEEEeC--chh-----hcccccc----cCc----eEEecCCcEEEEEEEeCCCEEEEEEehhhCCcC
Confidence 4689999999999999997 222 5554431 111 345679999999999999999999997 22222
Q ss_pred cCcceEEEEEECCC
Q 007890 151 EAGLYGSIRVSLPE 164 (586)
Q Consensus 151 ~~Gl~G~liV~~~~ 164 (586)
-..|.+-++|.+++
T Consensus 181 h~~M~~~v~v~~~~ 194 (201)
T TIGR02866 181 HSLMLFKVVVVERE 194 (201)
T ss_pred ccCCeEEEEEECHH
Confidence 36699999998753
No 66
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=92.48 E-value=0.69 Score=39.89 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=28.6
Q ss_pred CCCEEEEEEEeCCceeeEEeecchhhhhcCceEEEeccc
Q 007890 531 RYGWTALRFRADNPGAWAFHCHIESHFYMGMGVVFAEGI 569 (586)
Q Consensus 531 p~g~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~~~~ 569 (586)
++....+. ++.+|.|-|+|= -|...||-..+.|+.
T Consensus 54 ~g~~~~~t--F~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~ 88 (116)
T TIGR02375 54 INEEYTVT--VTEEGVYGVKCT--PHYGMGMVALIQVGD 88 (116)
T ss_pred CCCEEEEE--eCCCEEEEEEcC--CCccCCCEEEEEECC
Confidence 45554544 478999999998 999999999998865
No 67
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=92.26 E-value=1.3 Score=41.48 Aligned_cols=98 Identities=16% Similarity=0.070 Sum_probs=59.7
Q ss_pred ceEEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCC---CCCCCC--CCCCCcceeEEeCCCC
Q 007890 459 NGVYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYN---DPKKYN--LVNPIMKNTVPVHRYG 533 (586)
Q Consensus 459 ~~~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~---~~~~~n--~~~p~~rDTv~vpp~g 533 (586)
+..+.++.|-.|++++.|.+.+ . |.|-|+..+........ +.+-+. -..+.--..--+++|.
T Consensus 85 ~m~i~VPAGw~V~i~f~N~~~l------~-------Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~ 151 (196)
T PF06525_consen 85 QMTIYVPAGWNVQITFTNQESL------P-------HNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQ 151 (196)
T ss_pred cEEEEEcCCCEEEEEEEcCCCC------C-------eeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCc
Confidence 4458899999999999998766 4 56667754332111100 000000 0000000011233555
Q ss_pred EEEEEEEeCCceeeEEeecchhhhhcCceEEEeccc
Q 007890 534 WTALRFRADNPGAWAFHCHIESHFYMGMGVVFAEGI 569 (586)
Q Consensus 534 ~v~irf~adnpG~w~~HCHil~H~d~GM~~~~~~~~ 569 (586)
....-|..-.+|.|.|=|=|.-|...||-..+.+..
T Consensus 152 s~~~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~ 187 (196)
T PF06525_consen 152 SASGVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSS 187 (196)
T ss_pred eeeEEEccCCCceEEEEccCCChhhcCCEEEEEEec
Confidence 555455555799999999999999999999998754
No 68
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=91.36 E-value=0.99 Score=39.02 Aligned_cols=88 Identities=16% Similarity=0.139 Sum_probs=57.5
Q ss_pred CCCCcEEeecC-CEEEEEEEeCCCCCCeeEEecceeeccCCCC--------------CCCCc-c-----ccccCCCCCeE
Q 007890 70 TPGPTIQARQN-DTVIVELKNSLLTENVAIHWHGIRQIGTPWA--------------DGTEG-V-----TQCPILPGETF 128 (586)
Q Consensus 70 ~pgP~i~v~~G-d~v~i~v~N~l~~~~~siH~HGl~~~~~~~~--------------DGv~~-~-----~q~~i~pG~~~ 128 (586)
|-=..|.|+.+ ..|.|+|+|. ...|-..--|-+-...+..+ |=+|. . .-.-|.|||+.
T Consensus 13 Fd~~~i~V~a~~k~vtv~l~h~-G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~ 91 (125)
T TIGR02695 13 FNTKSISVPKSCKEFTVNLKHT-GKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKT 91 (125)
T ss_pred ccccEEEEcCCCcEEEEEEecC-CcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceE
Confidence 33468999985 7899999998 55554444443322111111 11221 0 11357899999
Q ss_pred EEEEEcC--CCcc-eeeeccccccccCcceEEEE
Q 007890 129 TYKFVVD--RPGT-YLYHAHYGMQREAGLYGSIR 159 (586)
Q Consensus 129 ~Y~f~~~--~~Gt-~wYH~H~~~q~~~Gl~G~li 159 (586)
+..|++. ++|+ |-|-|-...|.. .|.|.|.
T Consensus 92 svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 92 SVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 9999984 6886 999999888876 5888875
No 69
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=91.23 E-value=0.89 Score=36.58 Aligned_cols=31 Identities=16% Similarity=0.119 Sum_probs=21.7
Q ss_pred EEeEEEEccCceEEEEEEeCCCC--CCceEEEE
Q 007890 289 VVQNLFIYSGETYSVLIKADQNP--TRNYWATT 319 (586)
Q Consensus 289 ~~~~l~l~pGqR~dVlv~~~~~~--~g~y~l~~ 319 (586)
......|.|||...+-.+.+... +|+|.+.+
T Consensus 50 al~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~a 82 (82)
T PF12690_consen 50 ALQEETLEPGESLTYEETWDLKDLSPGEYTLEA 82 (82)
T ss_dssp --EEEEE-TT-EEEEEEEESS----SEEEEEEE
T ss_pred eeeEEEECCCCEEEEEEEECCCCCCCceEEEeC
Confidence 45679999999999999998755 79998764
No 70
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=91.05 E-value=0.81 Score=45.00 Aligned_cols=79 Identities=15% Similarity=0.106 Sum_probs=59.9
Q ss_pred CCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccCCCCCeEEEEEEcCCCcceeeecc-ccccc
Q 007890 72 GPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAH-YGMQR 150 (586)
Q Consensus 72 gP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H-~~~q~ 150 (586)
...|.+..|..|++.++-. +.-+++...++.. +...-||...+..++++++|+|.-+|+ .-+..
T Consensus 136 ~n~l~lPv~~~V~f~ltS~--DViHsF~IP~l~~-------------k~d~iPG~~~~~~~~~~~~G~Y~g~Cae~CG~g 200 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSA--DVIHSFWIPQLGG-------------KIDAIPGMTTELWLTANKPGTYRGICAEYCGPG 200 (247)
T ss_pred cceEEEeCCCeEEEEEEec--hhceeEEecCCCc-------------eeeecCCceEEEEEecCCCeEEEEEcHhhcCCC
Confidence 3889999999999999877 4433333333321 234678999999999999999999998 44455
Q ss_pred cCcceEEEEEECCCC
Q 007890 151 EAGLYGSIRVSLPEG 165 (586)
Q Consensus 151 ~~Gl~G~liV~~~~~ 165 (586)
-..|.|.++|.++++
T Consensus 201 H~~M~~~v~vvs~~~ 215 (247)
T COG1622 201 HSFMRFKVIVVSQED 215 (247)
T ss_pred cccceEEEEEEcHHH
Confidence 567999999998753
No 71
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=90.96 E-value=4.7 Score=37.14 Aligned_cols=96 Identities=17% Similarity=0.090 Sum_probs=58.2
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCC-C--CCCCCCCCC--CCCCcceeEEeCCCCEE
Q 007890 461 VYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFD-I--YNDPKKYNL--VNPIMKNTVPVHRYGWT 535 (586)
Q Consensus 461 ~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~-~--~~~~~~~n~--~~p~~rDTv~vpp~g~v 535 (586)
.+.++.|-.|.++|.|...+ .| .+-|+..+..... + ..+.+.++. ..+..-..=-+..|...
T Consensus 86 tIyiPaGw~V~V~f~N~e~~------pH-------nl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~ 152 (195)
T TIGR03094 86 TIYLPAGWNVYVTFTNYESL------PH-------NLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSR 152 (195)
T ss_pred EEEEeCCCEEEEEEEcCCCC------Cc-------cEEEecCCCCCCCccccccCceeEeecccccCcccccccccccee
Confidence 48899999999999998866 54 4555544321110 0 001111110 00000011112345555
Q ss_pred EEEEEeCCceeeEEeecchhhhhcCceEEEeccc
Q 007890 536 ALRFRADNPGAWAFHCHIESHFYMGMGVVFAEGI 569 (586)
Q Consensus 536 ~irf~adnpG~w~~HCHil~H~d~GM~~~~~~~~ 569 (586)
...|..--||.+.+=|-+.-|...||-..+.+..
T Consensus 153 sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs 186 (195)
T TIGR03094 153 SGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSS 186 (195)
T ss_pred EEEeccCCCeeEEEEcccCChhhcCcEEEEEEec
Confidence 5666666899999999999999999999887753
No 72
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=90.88 E-value=1.1 Score=36.05 Aligned_cols=70 Identities=19% Similarity=0.267 Sum_probs=42.9
Q ss_pred EEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEe
Q 007890 462 YRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRA 541 (586)
Q Consensus 462 ~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~a 541 (586)
+.++.|++|.|+ |.+.. .|-.+.+.-.+ +.. .+.. ..+.++.... +++
T Consensus 13 i~v~~GdtVt~~--N~d~~------~Hnv~~~~g~~-------~~~--------------~~~~-~~~~~g~~~~--~tf 60 (83)
T TIGR02657 13 LHVKVGDTVTWI--NREAM------PHNVHFVAGVL-------GEA--------------ALKG-PMMKKEQAYS--LTF 60 (83)
T ss_pred EEECCCCEEEEE--ECCCC------CccEEecCCCC-------ccc--------------cccc-cccCCCCEEE--EEC
Confidence 899999999884 65555 78877643211 000 0111 1234555444 555
Q ss_pred CCceeeEEeecchhhhhcCceEEEec
Q 007890 542 DNPGAWAFHCHIESHFYMGMGVVFAE 567 (586)
Q Consensus 542 dnpG~w~~HCHil~H~d~GM~~~~~~ 567 (586)
+.||.|.|||=+ |- +|-..+.+
T Consensus 61 ~~~G~y~y~C~~--Hp--~M~G~v~V 82 (83)
T TIGR02657 61 TEAGTYDYHCTP--HP--FMRGKVVV 82 (83)
T ss_pred CCCEEEEEEcCC--CC--CCeEEEEE
Confidence 889999999986 55 37666644
No 73
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=89.02 E-value=2.4 Score=36.45 Aligned_cols=72 Identities=19% Similarity=0.227 Sum_probs=47.4
Q ss_pred EEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEe
Q 007890 462 YRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRA 541 (586)
Q Consensus 462 ~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~a 541 (586)
+.++.|++|.|+-.+.. . .|-.. ..+.+.|+. ......+|+...+.|
T Consensus 44 ltV~~GdTVtw~~~~d~-~------~HnV~---------s~~~~~f~s---------------~~~~~~~G~t~s~Tf-- 90 (115)
T TIGR03102 44 IRVDPGTTVVWEWTGEG-G------GHNVV---------SDGDGDLDE---------------SERVSEEGTTYEHTF-- 90 (115)
T ss_pred EEECCCCEEEEEECCCC-C------CEEEE---------ECCCCCccc---------------cccccCCCCEEEEEe--
Confidence 89999999999865422 2 45532 222222220 111234566666666
Q ss_pred CCceeeEEeecchhhhhcCceEEEecc
Q 007890 542 DNPGAWAFHCHIESHFYMGMGVVFAEG 568 (586)
Q Consensus 542 dnpG~w~~HCHil~H~d~GM~~~~~~~ 568 (586)
+.||.|.|+|= .|...||-..+.|+
T Consensus 91 ~~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 91 EEPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred cCCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 78999999997 89999999988763
No 74
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=86.96 E-value=5.1 Score=34.76 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=49.6
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEE
Q 007890 461 VYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFR 540 (586)
Q Consensus 461 ~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~ 540 (586)
.+.++.|+.|++.+.+.+- .|.|.+-.....+ .+.||....+.|.
T Consensus 47 ~l~lp~g~~v~~~ltS~DV-------iHsf~ip~~~~k~----------------------------d~~PG~~~~~~~~ 91 (120)
T PF00116_consen 47 ELVLPAGQPVRFHLTSEDV-------IHSFWIPELGIKM----------------------------DAIPGRTNSVTFT 91 (120)
T ss_dssp EEEEETTSEEEEEEEESSS--------EEEEETTCTEEE----------------------------EEBTTCEEEEEEE
T ss_pred eecccccceEeEEEEcCCc-------cccccccccCccc----------------------------ccccccceeeeee
Confidence 4899999999999999775 4777776554332 3457888999999
Q ss_pred eCCceeeEEeecchhhhhcC
Q 007890 541 ADNPGAWAFHCHIESHFYMG 560 (586)
Q Consensus 541 adnpG~w~~HCHil~H~d~G 560 (586)
++.||.+-..|...=.....
T Consensus 92 ~~~~G~y~~~C~e~CG~gH~ 111 (120)
T PF00116_consen 92 PDKPGTYYGQCAEYCGAGHS 111 (120)
T ss_dssp ESSSEEEEEEE-SSSSTTGG
T ss_pred eccCCcEEEcCccccCcCcC
Confidence 99999999999876544444
No 75
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=83.97 E-value=5.3 Score=38.09 Aligned_cols=69 Identities=17% Similarity=0.181 Sum_probs=50.1
Q ss_pred EEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEe
Q 007890 462 YRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRA 541 (586)
Q Consensus 462 ~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~a 541 (586)
+.++.|+.|++.+.+.+- .|.|.+-+... .+| +-||....+.|.+
T Consensus 119 l~vp~g~~v~~~~ts~DV-------~Hsf~ip~~~~-------------------------k~d---a~PG~~~~~~~~~ 163 (201)
T TIGR02866 119 LVVPAGTPVRLQVTSKDV-------IHSFWVPELGG-------------------------KID---AIPGQYNALWFNA 163 (201)
T ss_pred EEEEcCCEEEEEEEeCch-------hhcccccccCc-------------------------eEE---ecCCcEEEEEEEe
Confidence 899999999999998764 35554432211 122 4578888999999
Q ss_pred CCceeeEEeecc---hhhhhcCceEEEec
Q 007890 542 DNPGAWAFHCHI---ESHFYMGMGVVFAE 567 (586)
Q Consensus 542 dnpG~w~~HCHi---l~H~d~GM~~~~~~ 567 (586)
+.||.+...|-. ..| ..|...+.+
T Consensus 164 ~~~G~y~~~c~e~cG~~h--~~M~~~v~v 190 (201)
T TIGR02866 164 DEPGVYYGYCAELCGAGH--SLMLFKVVV 190 (201)
T ss_pred CCCEEEEEEehhhCCcCc--cCCeEEEEE
Confidence 999999999998 455 456665544
No 76
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=81.61 E-value=6.8 Score=34.32 Aligned_cols=72 Identities=22% Similarity=0.286 Sum_probs=45.2
Q ss_pred EEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEe
Q 007890 462 YRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRA 541 (586)
Q Consensus 462 ~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~a 541 (586)
++++.|++|+|+-. +.. .|-.+. .+.. .|..-+++...++.....-|
T Consensus 56 v~v~pGDTVtw~~~--d~~------~Hnv~~---------~~~~--------------~~~g~~~~~~~~~~s~~~Tf-- 102 (128)
T COG3794 56 VTVKPGDTVTWVNT--DSV------GHNVTA---------VGGM--------------DPEGSGTLKAGINESFTHTF-- 102 (128)
T ss_pred EEECCCCEEEEEEC--CCC------CceEEE---------eCCC--------------CcccccccccCCCcceEEEe--
Confidence 89999999999853 332 454332 2111 01112233333345555555
Q ss_pred CCceeeEEeecchhhhhcCceEEEecc
Q 007890 542 DNPGAWAFHCHIESHFYMGMGVVFAEG 568 (586)
Q Consensus 542 dnpG~w~~HCHil~H~d~GM~~~~~~~ 568 (586)
+-||.|.|.|- -|..+||-..+.|+
T Consensus 103 e~~G~Y~Y~C~--PH~~~gM~G~IvV~ 127 (128)
T COG3794 103 ETPGEYTYYCT--PHPGMGMKGKIVVG 127 (128)
T ss_pred cccceEEEEec--cCCCCCcEEEEEeC
Confidence 44999999995 69999999988775
No 77
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=75.81 E-value=31 Score=28.03 Aligned_cols=70 Identities=17% Similarity=0.250 Sum_probs=42.8
Q ss_pred EEeCCcEE--EEEEeecCCcceEEEEeCCCeeEEEecCCccccceEEeEE-EEccCceEEEEEEeCCCCCCceEEEEEee
Q 007890 246 TVIPGKTY--RLRISSLTALSALSFQIEGHNMTVVEADGHNVEPFVVQNL-FIYSGETYSVLIKADQNPTRNYWATTNIV 322 (586)
Q Consensus 246 ~v~~G~~~--rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l-~l~pGqR~dVlv~~~~~~~g~y~l~~~~~ 322 (586)
.+.+|+.+ .+.+-|.|....-.+.+. +-.||..+ ....+ .|.+|+...+-+......+|.|.+++...
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~iD 84 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVID 84 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEES
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEEe
Confidence 45667775 677899987643333222 33455543 33445 78999999998888764578999888765
Q ss_pred cC
Q 007890 323 SR 324 (586)
Q Consensus 323 ~~ 324 (586)
..
T Consensus 85 ~~ 86 (101)
T PF07705_consen 85 PD 86 (101)
T ss_dssp TT
T ss_pred eC
Confidence 43
No 78
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=75.20 E-value=11 Score=30.26 Aligned_cols=57 Identities=26% Similarity=0.440 Sum_probs=31.0
Q ss_pred cEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCc---cccccCCCCCeEEEEEEc--CC--Ccceee
Q 007890 74 TIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEG---VTQCPILPGETFTYKFVV--DR--PGTYLY 142 (586)
Q Consensus 74 ~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~---~~q~~i~pG~~~~Y~f~~--~~--~Gt~wY 142 (586)
+|+..-|++..+.|.|. .|-.+. .|++|-.. +.+..|.||++.+|++.. .. +|+|..
T Consensus 17 ~l~f~sgq~~D~~v~d~----------~g~~vw--rwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 17 TLQFPSGQRYDFVVKDK----------EGKEVW--RWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEESSS--EEEEEE-T----------T--EEE--ETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEeCCCCEEEEEEECC----------CCCEEE--EecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 56666666666666665 222222 57777663 245789999999999998 33 788854
No 79
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=74.33 E-value=3.8 Score=42.96 Aligned_cols=78 Identities=22% Similarity=0.278 Sum_probs=48.9
Q ss_pred CcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccCCCCCeEEEEEEcCCCcceeeeccc-ccccc
Q 007890 73 PTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAHY-GMQRE 151 (586)
Q Consensus 73 P~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H~-~~q~~ 151 (586)
-++.|++||.|++.++|- ....-.+ ||.-.+ .-|+. ..+.|-++-.|.|.++.+|.+||.|-- -.-.-
T Consensus 558 ~ef~Vkq~DEVt~l~tnl-d~Ved~t--hgfv~p----~~~v~----~~v~pq~tasvtf~a~kpgv~w~ycs~fchalh 626 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNL-DEVEDLT--HGFVIP----NYGVN----MEVKPQRTASVTFYADKPGVAWYYCSWFCHALH 626 (637)
T ss_pred EEEEEecCcEEEEEeccc-ceecccc--ceeeec----cCceE----EEEccCCceEEEEEccCCeeeehhhhhHHHHHH
Confidence 467888888888888886 3322222 343322 11222 357888999999999999999999841 11111
Q ss_pred CcceEEEEEE
Q 007890 152 AGLYGSIRVS 161 (586)
Q Consensus 152 ~Gl~G~liV~ 161 (586)
+=|.|-++|+
T Consensus 627 ~em~~rmlve 636 (637)
T COG4263 627 MEMAGRMLVE 636 (637)
T ss_pred Hhhccceeec
Confidence 2256666665
No 80
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=72.86 E-value=61 Score=31.56 Aligned_cols=78 Identities=13% Similarity=0.086 Sum_probs=53.9
Q ss_pred CCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccCCCCCeEEEEEEcCCCcceeeecc-ccccc
Q 007890 72 GPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAH-YGMQR 150 (586)
Q Consensus 72 gP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H-~~~q~ 150 (586)
...|.+..|..|++.+++. +.- |+..++. -|+ +.-.-||..-...|+++++|+|+-.|. .-+..
T Consensus 139 ~n~l~lP~~~~v~~~~ts~--DVi-----Hsf~ip~----~~~----k~d~~Pg~~~~~~~~~~~~g~y~~~C~e~CG~~ 203 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSA--DVI-----HSWTVPS----LGV----KVDAIPGRLNQLSFEPKRPGVFYGQCSEICGAN 203 (228)
T ss_pred CCeEEEeeCcEEEEEEEcC--ccc-----cceeccc----cCc----eeECCCCcceeEEEEeCCCEEEEEECccccCcC
Confidence 4679999999999999997 322 4544431 121 133568999888999999999999997 22222
Q ss_pred cCcceEEEEEECCC
Q 007890 151 EAGLYGSIRVSLPE 164 (586)
Q Consensus 151 ~~Gl~G~liV~~~~ 164 (586)
-..|.+.++|.+++
T Consensus 204 H~~M~~~v~v~~~~ 217 (228)
T MTH00140 204 HSFMPIVVEAVPLE 217 (228)
T ss_pred cCCCeEEEEEECHH
Confidence 34577777777643
No 81
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=66.29 E-value=80 Score=32.64 Aligned_cols=58 Identities=22% Similarity=0.291 Sum_probs=34.4
Q ss_pred CCCCCcEEeecCCEEEEEEEeCCCCCCe--------eEEecce-eeccCCCCCCCC---------ccccccCCCCCeEEE
Q 007890 69 RTPGPTIQARQNDTVIVELKNSLLTENV--------AIHWHGI-RQIGTPWADGTE---------GVTQCPILPGETFTY 130 (586)
Q Consensus 69 ~~pgP~i~v~~Gd~v~i~v~N~l~~~~~--------siH~HGl-~~~~~~~~DGv~---------~~~q~~i~pG~~~~Y 130 (586)
.+||=+++ +.+.++|+ .+++. +++|-.- .+. .+..+.| -..+.||.|||+.+.
T Consensus 278 ~VPGR~l~------~~~~VTN~-g~~~vrlgEF~TA~vRFlN~~~v~--~~~~~yP~~lla~GL~v~d~~pI~PGETr~v 348 (399)
T TIGR03079 278 DVPGRALR------VTMEITNN-GDQVISIGEFTTAGIRFMNANGVR--VLDPDYPRELLAEGLEVDDQSAIAPGETVEV 348 (399)
T ss_pred ecCCcEEE------EEEEEEcC-CCCceEEEeEeecceEeeCccccc--ccCCCChHHHhhccceeCCCCCcCCCcceEE
Confidence 36776665 45778888 76653 3343332 111 1222222 223579999999999
Q ss_pred EEEcC
Q 007890 131 KFVVD 135 (586)
Q Consensus 131 ~f~~~ 135 (586)
+.+++
T Consensus 349 ~v~aq 353 (399)
T TIGR03079 349 KMEAK 353 (399)
T ss_pred EEEEe
Confidence 98874
No 82
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=62.75 E-value=70 Score=25.02 Aligned_cols=66 Identities=23% Similarity=0.362 Sum_probs=30.8
Q ss_pred EeCCcEE--EEEEeecCCcc--eEEEEeCCCeeEEEecCCccc--cceEEeEEEEccCceEEEEEEe--CCC-CCCceEE
Q 007890 247 VIPGKTY--RLRISSLTALS--ALSFQIEGHNMTVVEADGHNV--EPFVVQNLFIYSGETYSVLIKA--DQN-PTRNYWA 317 (586)
Q Consensus 247 v~~G~~~--rlRliN~g~~~--~~~~~i~gh~~~via~DG~~~--~P~~~~~l~l~pGqR~dVlv~~--~~~-~~g~y~l 317 (586)
|.+|+.+ ++.+-|.+... ...+++.. =+|-.+ .|.... .|.||+...+-++. +++ .+|+|.|
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-------P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLSL-------PEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEeC-------CCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 3466664 77888988543 24444432 233221 233443 78999766655554 432 4589998
Q ss_pred EEEe
Q 007890 318 TTNI 321 (586)
Q Consensus 318 ~~~~ 321 (586)
.+..
T Consensus 72 ~~~a 75 (78)
T PF10633_consen 72 TVTA 75 (78)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8754
No 83
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=62.11 E-value=1.4e+02 Score=28.18 Aligned_cols=77 Identities=12% Similarity=0.052 Sum_probs=52.6
Q ss_pred CcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccCCCCCeEEEEEEcCCCcceeeecc-cccccc
Q 007890 73 PTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAH-YGMQRE 151 (586)
Q Consensus 73 P~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H-~~~q~~ 151 (586)
-.+++..|..|+++++-. +.-++....++. + +.-.-||..-...|+++++|+|.-.|. .-+..-
T Consensus 116 ~~l~lp~g~~v~~~ltS~--DViHsf~vp~l~------------~-k~d~~PG~~~~~~~~~~~~G~y~g~C~e~CG~~H 180 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSS--DVIHSFSVPDLN------------L-KMDAIPGRINHLFFCPDRHGVFVGYCSELCGVGH 180 (194)
T ss_pred ceEEEeCCCEEEeeeecC--ccccceeccccC------------c-eeecCCCceEEEEEEcCCCEEEEEEeehhhCcCc
Confidence 348899999999998877 333333332221 1 123458999999999999999999997 222223
Q ss_pred CcceEEEEEECCC
Q 007890 152 AGLYGSIRVSLPE 164 (586)
Q Consensus 152 ~Gl~G~liV~~~~ 164 (586)
..|.+.+.|.+++
T Consensus 181 ~~M~~~v~v~~~~ 193 (194)
T MTH00047 181 SYMPIVIEVVDVD 193 (194)
T ss_pred ccCcEEEEEEcCC
Confidence 5588888887764
No 84
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=61.97 E-value=27 Score=34.37 Aligned_cols=67 Identities=21% Similarity=0.261 Sum_probs=49.1
Q ss_pred EEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEe
Q 007890 462 YRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRA 541 (586)
Q Consensus 462 ~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~a 541 (586)
+.++.|+.|++.+...+-+ | .|+|-+.+ .-+.+-||-...+.+.+
T Consensus 139 l~lPv~~~V~f~ltS~DVi-------H-------sF~IP~l~---------------------~k~d~iPG~~~~~~~~~ 183 (247)
T COG1622 139 LVLPVGRPVRFKLTSADVI-------H-------SFWIPQLG---------------------GKIDAIPGMTTELWLTA 183 (247)
T ss_pred EEEeCCCeEEEEEEechhc-------e-------eEEecCCC---------------------ceeeecCCceEEEEEec
Confidence 8999999999999987754 4 45553332 11233467788899999
Q ss_pred CCceeeEEeecchhhhhcCceE
Q 007890 542 DNPGAWAFHCHIESHFYMGMGV 563 (586)
Q Consensus 542 dnpG~w~~HCHil~H~d~GM~~ 563 (586)
+.||.|-.+|+..-=....+|.
T Consensus 184 ~~~G~Y~g~Cae~CG~gH~~M~ 205 (247)
T COG1622 184 NKPGTYRGICAEYCGPGHSFMR 205 (247)
T ss_pred CCCeEEEEEcHhhcCCCcccce
Confidence 9999999999987755555443
No 85
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=60.62 E-value=18 Score=35.14 Aligned_cols=70 Identities=16% Similarity=0.156 Sum_probs=49.2
Q ss_pred EEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEe
Q 007890 462 YRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRA 541 (586)
Q Consensus 462 ~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~a 541 (586)
+.++.|+.|++.+...+-. |.|+|-+.+ ..+|.+ ||-...+.|++
T Consensus 141 l~lP~g~pV~~~ltS~DVi--------------HSF~VP~l~------------------~K~Dai---PG~~n~~~~~~ 185 (226)
T TIGR01433 141 IAFPVNTPINFKITSNSVM--------------NSFFIPQLG------------------SQIYAM---AGMQTKLHLIA 185 (226)
T ss_pred EEEECCCEEEEEEEECchh--------------hhhhhhhcC------------------CeeecC---CCceEEEEEEe
Confidence 7899999999999987754 455564432 334554 67778899999
Q ss_pred CCceeeEEeecchhhhh-cCceEEEe
Q 007890 542 DNPGAWAFHCHIESHFY-MGMGVVFA 566 (586)
Q Consensus 542 dnpG~w~~HCHil~H~d-~GM~~~~~ 566 (586)
|.||.|.-.|--.-=.. .-|...+.
T Consensus 186 ~~~G~y~g~CaE~CG~~Ha~M~~~V~ 211 (226)
T TIGR01433 186 NEPGVYDGISANYSGPGFSGMKFKAI 211 (226)
T ss_pred CCCEEEEEEchhhcCcCccCCeEEEE
Confidence 99999999997544332 23444443
No 86
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=60.00 E-value=27 Score=28.71 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=40.3
Q ss_pred EeCCcEEEEEEe--ecCCcceEEEEeCCC--eeEEEecCCccccceEEeEE-EEccCceEEEEEEeCCCC-CCceEEEEE
Q 007890 247 VIPGKTYRLRIS--SLTALSALSFQIEGH--NMTVVEADGHNVEPFVVQNL-FIYSGETYSVLIKADQNP-TRNYWATTN 320 (586)
Q Consensus 247 v~~G~~~rlRli--N~g~~~~~~~~i~gh--~~~via~DG~~~~P~~~~~l-~l~pGqR~dVlv~~~~~~-~g~y~l~~~ 320 (586)
-+|||++.+|++ +... . .-...+. .++|..-+|..+ ..... .......++..+.+++++ .|.|.|++.
T Consensus 11 YrPGetV~~~~~~~~~~~-~--~~~~~~~~~~v~i~dp~g~~v---~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~ 84 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDN-D--FKPPANSPVTVTIKDPSGNEV---FRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVK 84 (99)
T ss_dssp E-TTSEEEEEEEEEEECT-T--CSCESSEEEEEEEEETTSEEE---EEEEEEETTCTTEEEEEEE--SS---EEEEEEEE
T ss_pred cCCCCEEEEEEEEecccc-c--cccccCCceEEEEECCCCCEE---EEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEE
Confidence 478999999998 6652 1 0111222 355655566533 12222 345788888888888743 599999987
Q ss_pred ee
Q 007890 321 IV 322 (586)
Q Consensus 321 ~~ 322 (586)
..
T Consensus 85 ~~ 86 (99)
T PF01835_consen 85 TD 86 (99)
T ss_dssp ET
T ss_pred Ec
Confidence 64
No 87
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=59.86 E-value=15 Score=28.94 Aligned_cols=61 Identities=25% Similarity=0.453 Sum_probs=26.6
Q ss_pred ecCC--EEEEEEEeCCCCCCe-eEEecceeeccCCCCCCCCccccccCCCCCeEEEEEEc-----CCCccee
Q 007890 78 RQND--TVIVELKNSLLTENV-AIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVV-----DRPGTYL 141 (586)
Q Consensus 78 ~~Gd--~v~i~v~N~l~~~~~-siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~-----~~~Gt~w 141 (586)
++|+ ++.++|+|. ...+. .+..- +. .+..|.......+-..|+||++.+..|.+ -.+|+|.
T Consensus 2 ~~G~~~~~~~tv~N~-g~~~~~~v~~~-l~-~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~ 70 (78)
T PF10633_consen 2 TPGETVTVTLTVTNT-GTAPLTNVSLS-LS-LPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTYT 70 (78)
T ss_dssp -TTEEEEEEEEEE---SSS-BSS-EEE-EE---TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEEE
T ss_pred CCCCEEEEEEEEEEC-CCCceeeEEEE-Ee-CCCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceEE
Confidence 4555 456778898 54331 11111 11 12355522222222379999999999988 2467764
No 88
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=59.80 E-value=46 Score=25.39 Aligned_cols=65 Identities=17% Similarity=0.302 Sum_probs=35.7
Q ss_pred eEEEEeCCcEEEEEEeecCCcceEEEEeCCCeeEEEecCCccccceEEeEEEEccCceEEEEEEeCCCCCCceEEEEE
Q 007890 243 YVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHNVEPFVVQNLFIYSGETYSVLIKADQNPTRNYWATTN 320 (586)
Q Consensus 243 ~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~~~ 320 (586)
..++++.|+++++.+-+.+.. ..+.+...+|..+....... -..+..-.+.+.+.+ +|+|+|++.
T Consensus 5 y~f~v~ag~~l~i~l~~~~~d---------~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~~--~GtYyi~V~ 69 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSGD---------ADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAPA--AGTYYIRVY 69 (70)
T ss_dssp EEEEESTTEEEEEEECETTSS---------EEEEEEETTSSSCEECCCCT--CETTSEEEEEEEESS--SEEEEEEEE
T ss_pred EEEEEcCCCEEEEEEcCCCCC---------eEEEEEcCCCCchhhheecC--CCCCCccEEEEEcCC--CEEEEEEEE
Confidence 368899999999988776642 23555555554332111000 011222333344444 789998864
No 89
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=59.37 E-value=43 Score=27.07 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=38.2
Q ss_pred CCCcEEee---cCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccCCCCCeEEEEEEc
Q 007890 71 PGPTIQAR---QNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVV 134 (586)
Q Consensus 71 pgP~i~v~---~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~ 134 (586)
+.|.+.++ ....|.|+|.|. ...+..+....... ..+.+ .+..|.||++.+..|..
T Consensus 7 ~~~~v~~~~~~~~g~l~l~l~N~-g~~~~~~~v~~~~y-----~~~~~--~~~~v~ag~~~~~~w~l 65 (89)
T PF05506_consen 7 YAPEVTARYDPATGNLRLTLSNP-GSAAVTFTVYDNAY-----GGGGP--WTYTVAAGQTVSLTWPL 65 (89)
T ss_pred CCCEEEEEEECCCCEEEEEEEeC-CCCcEEEEEEeCCc-----CCCCC--EEEEECCCCEEEEEEee
Confidence 34555554 234899999999 88888777665321 11112 34679999999999987
No 90
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=58.62 E-value=12 Score=31.95 Aligned_cols=54 Identities=24% Similarity=0.316 Sum_probs=33.0
Q ss_pred EEEEEeCCCCCC---eeEEecceeecc---CCCCCCCCccccccCCCCCeEEEEEEc---CCCcc
Q 007890 84 IVELKNSLLTEN---VAIHWHGIRQIG---TPWADGTEGVTQCPILPGETFTYKFVV---DRPGT 139 (586)
Q Consensus 84 ~i~v~N~l~~~~---~siH~HGl~~~~---~~~~DGv~~~~q~~i~pG~~~~Y~f~~---~~~Gt 139 (586)
.|++.|. ...+ .+=|||=-...+ .-.-+||-| .|..|.||++|+|.=-+ .+.|+
T Consensus 33 titI~N~-g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVG-eQP~l~PG~~y~YtSg~~l~Tp~G~ 95 (126)
T COG2967 33 TVTIRNL-GEVPVQLLSRYWLITDGNGRVTEVEGEGVVG-EQPLLAPGEEYQYTSGCPLDTPSGT 95 (126)
T ss_pred EEEEecC-CCccceeeeeEEEEecCCCcEEEEEcCceec-cccccCCCCceEEcCCcCccCCcce
Confidence 3778888 6655 567898332111 011245554 37889999999987433 45555
No 91
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=53.98 E-value=1.4e+02 Score=25.46 Aligned_cols=22 Identities=9% Similarity=0.384 Sum_probs=12.3
Q ss_pred eEEeEEEEccCceEEEEEEeCC
Q 007890 288 FVVQNLFIYSGETYSVLIKADQ 309 (586)
Q Consensus 288 ~~~~~l~l~pGqR~dVlv~~~~ 309 (586)
.....+.|.+|..|.+.+.-..
T Consensus 62 l~~~~i~l~~g~~yTl~~~g~~ 83 (122)
T PF14344_consen 62 LLSTTITLEAGKSYTLFAVGTA 83 (122)
T ss_pred EEeccEEEcCCCEEEEEEECCC
Confidence 4445556666666666665443
No 92
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=53.80 E-value=37 Score=35.62 Aligned_cols=66 Identities=21% Similarity=0.295 Sum_probs=44.7
Q ss_pred CCCceEEEEeCCcEEEEEEeecCCcceEEEEeCCCeeEEEecCCccccceEEeEEEEccCceEEEEEEeCCCCCCceEEE
Q 007890 239 ECSPYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHNVEPFVVQNLFIYSGETYSVLIKADQNPTRNYWAT 318 (586)
Q Consensus 239 ~~~~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGqR~dVlv~~~~~~~g~y~l~ 318 (586)
.|.+..+++++|+ ++|.+.|.+... ++|.++ +|+.+ ..+.=.|+||.+..+.+.+. +|+|.+.
T Consensus 40 ~c~p~~~tVpAG~-~~f~V~N~~~~~--------~Efe~~--~~~~v---v~e~EnIaPG~s~~l~~~L~---pGtY~~~ 102 (375)
T PRK10378 40 QCEPMTLTVNAGK-TQFIIQNHSQKA--------LEWEIL--KGVMV---VEERENIAPGFSQKMTANLQ---PGEYDMT 102 (375)
T ss_pred ccccCceeeCCCC-EEEEEEeCCCCc--------ceEEee--ccccc---cccccccCCCCceEEEEecC---CceEEee
Confidence 4456689999995 999999998664 344444 22211 00122789998888877773 6999998
Q ss_pred EEe
Q 007890 319 TNI 321 (586)
Q Consensus 319 ~~~ 321 (586)
+.+
T Consensus 103 C~~ 105 (375)
T PRK10378 103 CGL 105 (375)
T ss_pred cCc
Confidence 744
No 93
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=53.63 E-value=77 Score=26.05 Aligned_cols=62 Identities=19% Similarity=0.409 Sum_probs=38.8
Q ss_pred EEeCCcEE--EEEEeecCCcc-eEEEEeCC---CeeEEEecCCccccceEEeEEEEccCceEEEEEEeC-CCCCCceEEE
Q 007890 246 TVIPGKTY--RLRISSLTALS-ALSFQIEG---HNMTVVEADGHNVEPFVVQNLFIYSGETYSVLIKAD-QNPTRNYWAT 318 (586)
Q Consensus 246 ~v~~G~~~--rlRliN~g~~~-~~~~~i~g---h~~~via~DG~~~~P~~~~~l~l~pGqR~dVlv~~~-~~~~g~y~l~ 318 (586)
.+..|++| .+.|.|.|... .+.+.... ..|.+ +| ..-.|+||+..++.|.+. ..+.|.|.-.
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v--------~~---~~g~l~PG~~~~~~V~~~~~~~~g~~~~~ 83 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSV--------EP---PSGFLAPGESVELEVTFSPTKPLGDYEGS 83 (102)
T ss_pred EEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEE--------EC---CCCEECCCCEEEEEEEEEeCCCCceEEEE
Confidence 45667776 69999999763 23443332 12222 22 234599999999999988 5455766543
No 94
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=49.14 E-value=1.2e+02 Score=25.47 Aligned_cols=69 Identities=22% Similarity=0.264 Sum_probs=43.1
Q ss_pred EEEEEeCCCCCCeeEEecceeeccCCCCC-CCCccccccCCCCCeEEEEEEcCCCcceeeeccccccccCcceEEEEEEC
Q 007890 84 IVELKNSLLTENVAIHWHGIRQIGTPWAD-GTEGVTQCPILPGETFTYKFVVDRPGTYLYHAHYGMQREAGLYGSIRVSL 162 (586)
Q Consensus 84 ~i~v~N~l~~~~~siH~HGl~~~~~~~~D-Gv~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~ 162 (586)
.|+++|+| .....|..|=-. ...| |+ ..+.||+++..+|..+-.|+-.|.|+... ....-..-+.|..
T Consensus 2 ~V~I~N~L-~~~~~L~vhC~S----~d~Dlg~-----~~l~~g~~~~~~F~~~~~~~t~f~C~~~~-~~~~~~~~f~vy~ 70 (110)
T PF05938_consen 2 HVVIINNL-GPGKILTVHCKS----KDDDLGW-----HVLKPGQSYSFSFRDNFFGTTLFWCHFRW-PGGKYHHSFDVYR 70 (110)
T ss_pred EEEEEECC-CCCCeEEEEeeC----CCccCCC-----EECCCCCEEEEEEecCcCCceeEEEEEEE-CCccEEEEEEEEe
Confidence 58899996 333334444331 1122 33 46899999999998876788888999655 1111366666654
Q ss_pred C
Q 007890 163 P 163 (586)
Q Consensus 163 ~ 163 (586)
.
T Consensus 71 ~ 71 (110)
T PF05938_consen 71 S 71 (110)
T ss_pred c
Confidence 3
No 95
>COG1470 Predicted membrane protein [Function unknown]
Probab=47.93 E-value=1e+02 Score=33.04 Aligned_cols=76 Identities=21% Similarity=0.381 Sum_probs=50.4
Q ss_pred ceEEEEeCCcE--EEEEEeecCCc--ceEEEEeCCCeeEEEecCCccccceEEeEEEEccCce--EEEEEEeCCC-CCCc
Q 007890 242 PYVITVIPGKT--YRLRISSLTAL--SALSFQIEGHNMTVVEADGHNVEPFVVQNLFIYSGET--YSVLIKADQN-PTRN 314 (586)
Q Consensus 242 ~~~~~v~~G~~--~rlRliN~g~~--~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGqR--~dVlv~~~~~-~~g~ 314 (586)
+..+++.+|+- ++++|-|.|+. ..+.+.+++-+=+=|.+|+. ..+. |.||+| +++.++++++ .+|+
T Consensus 388 ~~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~-----~I~s--L~pge~~tV~ltI~vP~~a~aGd 460 (513)
T COG1470 388 PYRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDES-----TIPS--LEPGESKTVSLTITVPEDAGAGD 460 (513)
T ss_pred cEEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcc-----cccc--cCCCCcceEEEEEEcCCCCCCCc
Confidence 45678888875 58999999865 45777777766566666665 3333 345544 5555666653 4588
Q ss_pred eEEEEEeecC
Q 007890 315 YWATTNIVSR 324 (586)
Q Consensus 315 y~l~~~~~~~ 324 (586)
|.+......+
T Consensus 461 Y~i~i~~ksD 470 (513)
T COG1470 461 YRITITAKSD 470 (513)
T ss_pred EEEEEEEeec
Confidence 9998877665
No 96
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=46.26 E-value=57 Score=31.48 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=45.1
Q ss_pred EEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEe
Q 007890 462 YRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRA 541 (586)
Q Consensus 462 ~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~a 541 (586)
+.++.|+.|++.+...+-+ |.|+|=+.+ ..+|.+ ||-...+.|.+
T Consensus 132 l~iP~g~~v~~~ltS~DVi--------------Hsf~vP~l~------------------~k~dai---PG~~~~~~~~~ 176 (217)
T TIGR01432 132 LNIPKDRPVLFKLQSADTM--------------TSFWIPQLG------------------GQKYAM---TGMTMNWYLQA 176 (217)
T ss_pred EEEECCCEEEEEEECCchh--------------hhhhchhhC------------------ceeecC---CCceEEEEEEe
Confidence 7899999999999987754 456663321 344554 77788899999
Q ss_pred CCceeeEEeecchh
Q 007890 542 DNPGAWAFHCHIES 555 (586)
Q Consensus 542 dnpG~w~~HCHil~ 555 (586)
+.||.|--.|=-.-
T Consensus 177 ~~~G~y~g~Cae~C 190 (217)
T TIGR01432 177 DQVGTYRGRNANFN 190 (217)
T ss_pred CCCEEEEEEehhhc
Confidence 99999999997543
No 97
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=45.47 E-value=2.2e+02 Score=27.41 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=50.4
Q ss_pred CcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccCCCCCeEEEEEEcCCCcceeeecc-cccccc
Q 007890 73 PTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAH-YGMQRE 151 (586)
Q Consensus 73 P~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H-~~~q~~ 151 (586)
..|.+..|..|++.++-+ +. | |...++. . ++ +.-.-||..-...|+++++|+|+=.|- .-+-.-
T Consensus 130 n~l~iP~g~~v~~~ltS~--DV---i--Hsf~vP~---l----~~-k~daiPG~~~~~~~~~~~~G~y~g~Cae~CG~~H 194 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSA--DT---M--TSFWIPQ---L----GG-QKYAMTGMTMNWYLQADQVGTYRGRNANFNGEGF 194 (217)
T ss_pred CcEEEECCCEEEEEEECC--ch---h--hhhhchh---h----Cc-eeecCCCceEEEEEEeCCCEEEEEEehhhcCccc
Confidence 578999999999999887 32 2 2332210 1 11 223458999999999999999998886 212222
Q ss_pred CcceEEEEEECC
Q 007890 152 AGLYGSIRVSLP 163 (586)
Q Consensus 152 ~Gl~G~liV~~~ 163 (586)
+-|..-+.|.++
T Consensus 195 s~M~~~v~v~~~ 206 (217)
T TIGR01432 195 ADQTFDVNAVSE 206 (217)
T ss_pred cCCeEEEEEeCH
Confidence 347777777654
No 98
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=41.67 E-value=2e+02 Score=25.88 Aligned_cols=61 Identities=21% Similarity=0.297 Sum_probs=33.9
Q ss_pred cEEeecCCEEEEEEEeCC--CCCCeeEEecceee-----c-cCCCCCCCCcc-----ccccCCCCCeEEEEEEc
Q 007890 74 TIQARQNDTVIVELKNSL--LTENVAIHWHGIRQ-----I-GTPWADGTEGV-----TQCPILPGETFTYKFVV 134 (586)
Q Consensus 74 ~i~v~~Gd~v~i~v~N~l--~~~~~siH~HGl~~-----~-~~~~~DGv~~~-----~q~~i~pG~~~~Y~f~~ 134 (586)
.=.+++|.+..|.+.=.. ......--.||+.. + +-+..||-..- .-||+.+||.++|.+..
T Consensus 49 pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~age~ytY~~sl 122 (158)
T KOG4063|consen 49 PCQLKKGTEASIQIDFAPSRDTTKLKTVVHGITLGSVPVPFPLPASDACVCGNLLHGVYCPLSAGEDYTYLNSL 122 (158)
T ss_pred ceEEecCCeEEEEEEEeeccchhhhhheeeeeecccEeecCCCCCCcccccccccccccCcccCCCceEEEEEe
Confidence 445677776555554431 11122223344422 1 11335665543 45999999999999876
No 99
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=41.14 E-value=3.5e+02 Score=26.40 Aligned_cols=76 Identities=13% Similarity=0.092 Sum_probs=48.2
Q ss_pred CcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccCCCCCeEEEEEEcCCCcceeeeccc-ccccc
Q 007890 73 PTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAHY-GMQRE 151 (586)
Q Consensus 73 P~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H~-~~q~~ 151 (586)
..|.+..|..|++.++.. +. | |+..++. -|+ . .-.-||..-...|.+.++|+|+--|.- -+..-
T Consensus 144 n~lvlP~~~~v~~~itS~--DV---i--Hsf~vp~----lg~---k-~daiPG~~~~~~~~~~~~G~y~g~Cse~CG~~H 208 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAA--DV---L--HSFAVPS----LSV---K-IDAVPGRLNQTSFFIKRPGVFYGQCSEICGANH 208 (234)
T ss_pred eEEEEecCcEEEEEEEeC--ch---h--ccccccc----cCc---e-eEccCCceEeEEEEeCCCEEEEEEChhhcCccc
Confidence 458899999999999988 32 2 4443321 121 1 234588888888899999999998871 11112
Q ss_pred CcceEEEEEECC
Q 007890 152 AGLYGSIRVSLP 163 (586)
Q Consensus 152 ~Gl~G~liV~~~ 163 (586)
.-|-..+.|.++
T Consensus 209 s~M~i~v~vv~~ 220 (234)
T MTH00051 209 SFMPIVIEGVSL 220 (234)
T ss_pred ccCeeEEEEECH
Confidence 335555665543
No 100
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=41.03 E-value=1.4e+02 Score=27.22 Aligned_cols=70 Identities=13% Similarity=0.219 Sum_probs=47.1
Q ss_pred EEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEe
Q 007890 462 YRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRA 541 (586)
Q Consensus 462 ~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~a 541 (586)
+.++.|..+++.+...+-. |.|.+-... ...|. -||-...+.|.+
T Consensus 75 LvLP~g~~Vr~~lTS~DVI-------HSF~VP~lg-------------------------vK~Da---vPGr~n~l~~~~ 119 (162)
T PTZ00047 75 LTLPTRTHIRFLITATDVI-------HSWSVPSLG-------------------------IKADA---IPGRLHKINTFI 119 (162)
T ss_pred EEEeCCCEEEEEEEeCccc-------eeeeccccC-------------------------ceeec---cCCceEEEEEec
Confidence 7899999999999887653 555443321 12233 366677888999
Q ss_pred CCceeeEEeecchhhhhcC-ceEEEe
Q 007890 542 DNPGAWAFHCHIESHFYMG-MGVVFA 566 (586)
Q Consensus 542 dnpG~w~~HCHil~H~d~G-M~~~~~ 566 (586)
+.+|.+...|.-+-=.... |-..+.
T Consensus 120 ~~~G~y~gqCsElCG~gHs~M~~~V~ 145 (162)
T PTZ00047 120 LREGVFYGQCSEMCGTLHGFMPIVVE 145 (162)
T ss_pred CCCeEEEEEcchhcCcCccCceEEEE
Confidence 9999999999966533333 444443
No 101
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=40.47 E-value=2.5e+02 Score=24.41 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=42.5
Q ss_pred EEEEeCCcEEEEEEeecCCcceEEEEeCCCeeEEEecCCccc-------cceEEeEEEEccCceEEEEEEeCC
Q 007890 244 VITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHNV-------EPFVVQNLFIYSGETYSVLIKADQ 309 (586)
Q Consensus 244 ~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~-------~P~~~~~l~l~pGqR~dVlv~~~~ 309 (586)
.|.+.....|+|++-..+ ..++.|+|..+ |..++..- .+.....+.+..|++|+|.|...+
T Consensus 53 ~~~~~~~G~y~f~~~~~d---~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~ 120 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD---GARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFN 120 (145)
T ss_dssp EEEESSSEEEEEEEEESS---EEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEE
T ss_pred EEecccCceEEEEEEecc---cEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEE
Confidence 456655567999998444 57788988764 66665432 356677889999999999999765
No 102
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=39.07 E-value=2.4e+02 Score=24.35 Aligned_cols=60 Identities=22% Similarity=0.362 Sum_probs=37.3
Q ss_pred EEEeCCcEEEEEEeecCCcceEEEEeCCCeeEEEecCCccc-cceEEeEEEEccCceEEEEEEeCC
Q 007890 245 ITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHNV-EPFVVQNLFIYSGETYSVLIKADQ 309 (586)
Q Consensus 245 ~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~-~P~~~~~l~l~pGqR~dVlv~~~~ 309 (586)
+++.....|+|.+...+ ...+.|+|.. ||..++..- .+.....+.+..|++|.+.|...+
T Consensus 52 i~~~~~G~y~f~~~~~~---~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~ 112 (136)
T smart00758 52 LKPPEDGEYTFSITSDD---GARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFE 112 (136)
T ss_pred EECCCCccEEEEEEcCC---cEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEe
Confidence 44544446899885433 4677888763 444443321 233445688888888888888765
No 103
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.86 E-value=1.3e+02 Score=29.36 Aligned_cols=71 Identities=14% Similarity=0.244 Sum_probs=49.8
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEE
Q 007890 461 VYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFR 540 (586)
Q Consensus 461 ~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~ 540 (586)
.+.++.|+.|++.+.+.+- .|.|.+-.... .. .+-||....+.|.
T Consensus 141 ~l~lP~~~~v~~~~ts~DV-------iHsf~ip~~~~-------------------------k~---d~~Pg~~~~~~~~ 185 (228)
T MTH00140 141 RLVLPYSVDTRVLVTSADV-------IHSWTVPSLGV-------------------------KV---DAIPGRLNQLSFE 185 (228)
T ss_pred eEEEeeCcEEEEEEEcCcc-------ccceeccccCc-------------------------ee---ECCCCcceeEEEE
Confidence 3889999999999999765 35554433221 12 2347778888999
Q ss_pred eCCceeeEEeecchhhhhcCce-EEEe
Q 007890 541 ADNPGAWAFHCHIESHFYMGMG-VVFA 566 (586)
Q Consensus 541 adnpG~w~~HCHil~H~d~GM~-~~~~ 566 (586)
++.||.+...|.-+-......| ..++
T Consensus 186 ~~~~g~y~~~C~e~CG~~H~~M~~~v~ 212 (228)
T MTH00140 186 PKRPGVFYGQCSEICGANHSFMPIVVE 212 (228)
T ss_pred eCCCEEEEEECccccCcCcCCCeEEEE
Confidence 9999999999998776544444 4443
No 104
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=38.01 E-value=1.5e+02 Score=27.14 Aligned_cols=75 Identities=11% Similarity=0.140 Sum_probs=44.9
Q ss_pred cEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccCCCCCeEEEEEEcCCCcceeeecc-ccccccC
Q 007890 74 TIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAH-YGMQREA 152 (586)
Q Consensus 74 ~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H-~~~q~~~ 152 (586)
.|.+..|..|++.++-. +. | |+..++.- | + +.-+-||..-...|.+.++|+|+-.|. .-.-.-.
T Consensus 74 ~LvLP~g~~Vr~~lTS~--DV---I--HSF~VP~l----g---v-K~DavPGr~n~l~~~~~~~G~y~gqCsElCG~gHs 138 (162)
T PTZ00047 74 RLTLPTRTHIRFLITAT--DV---I--HSWSVPSL----G---I-KADAIPGRLHKINTFILREGVFYGQCSEMCGTLHG 138 (162)
T ss_pred CEEEeCCCEEEEEEEeC--cc---c--eeeecccc----C---c-eeeccCCceEEEEEecCCCeEEEEEcchhcCcCcc
Confidence 46667777777766655 22 2 33333210 1 1 123457888888888899999999998 2121123
Q ss_pred cceEEEEEECC
Q 007890 153 GLYGSIRVSLP 163 (586)
Q Consensus 153 Gl~G~liV~~~ 163 (586)
.|.+.+.|.++
T Consensus 139 ~M~~~V~vvs~ 149 (162)
T PTZ00047 139 FMPIVVEAVSP 149 (162)
T ss_pred CceEEEEEeCH
Confidence 47777777654
No 105
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=36.07 E-value=1e+02 Score=29.97 Aligned_cols=68 Identities=18% Similarity=0.252 Sum_probs=48.7
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEE
Q 007890 461 VYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFR 540 (586)
Q Consensus 461 ~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~ 540 (586)
.+.++.|+.+++.+...+-. | .|+|-+.| ..+|.+ ||-.-.+.|.
T Consensus 141 ~l~lP~~~~v~~~~tS~DVi-------H-------sf~vP~l~------------------~K~Dai---PG~~n~~~~~ 185 (226)
T MTH00139 141 RLVLPYKSNIRALITAADVL-------H-------SWTVPSLG------------------VKIDAV---PGRLNQVGFF 185 (226)
T ss_pred eEEEecCCEEEEEEecCccc-------c-------ceeccccC------------------ccccCC---CCcEEEEEEE
Confidence 38899999999999887754 4 45554332 334554 6777788999
Q ss_pred eCCceeeEEeecchhhhhcCceE
Q 007890 541 ADNPGAWAFHCHIESHFYMGMGV 563 (586)
Q Consensus 541 adnpG~w~~HCHil~H~d~GM~~ 563 (586)
++.||.+.--|--+-=.....|.
T Consensus 186 ~~~~G~y~g~CsE~CG~~Hs~M~ 208 (226)
T MTH00139 186 INRPGVFYGQCSEICGANHSFMP 208 (226)
T ss_pred cCCCEEEEEEChhhcCcCcCCCe
Confidence 99999999999866544444443
No 106
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=35.71 E-value=1.3e+02 Score=28.45 Aligned_cols=61 Identities=13% Similarity=0.246 Sum_probs=45.2
Q ss_pred EEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEe
Q 007890 462 YRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRA 541 (586)
Q Consensus 462 ~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~a 541 (586)
+.++.|+.+++.+...+-. |.|.+-... ..+|. -||-...+.|.+
T Consensus 118 l~lp~g~~v~~~ltS~DVi-------Hsf~vp~l~-------------------------~k~d~---~PG~~~~~~~~~ 162 (194)
T MTH00047 118 LRLVYGVPYHLLVTSSDVI-------HSFSVPDLN-------------------------LKMDA---IPGRINHLFFCP 162 (194)
T ss_pred EEEeCCCEEEeeeecCccc-------cceeccccC-------------------------ceeec---CCCceEEEEEEc
Confidence 7899999999999887654 655554332 12333 377888899999
Q ss_pred CCceeeEEeecchhhh
Q 007890 542 DNPGAWAFHCHIESHF 557 (586)
Q Consensus 542 dnpG~w~~HCHil~H~ 557 (586)
+.||.+-.-|.-.-=.
T Consensus 163 ~~~G~y~g~C~e~CG~ 178 (194)
T MTH00047 163 DRHGVFVGYCSELCGV 178 (194)
T ss_pred CCCEEEEEEeehhhCc
Confidence 9999999999866533
No 107
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=35.48 E-value=70 Score=26.17 Aligned_cols=50 Identities=30% Similarity=0.456 Sum_probs=28.2
Q ss_pred EEEEEEeecCCcceEEEEeCCCeeEEEecCCcccc----ceEEeEEEEccCceEEEE
Q 007890 252 TYRLRISSLTALSALSFQIEGHNMTVVEADGHNVE----PFVVQNLFIYSGETYSVL 304 (586)
Q Consensus 252 ~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~----P~~~~~l~l~pGqR~dVl 304 (586)
.|++||-|.+.. .+.|-...+.|...||...+ -+....=.|.|||.+..-
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y~ 68 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEYT 68 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEEc
Confidence 478999998866 45565666777777664221 122344568888876654
No 108
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=35.06 E-value=1.3e+02 Score=29.27 Aligned_cols=76 Identities=12% Similarity=0.096 Sum_probs=49.2
Q ss_pred CcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccCCCCCeEEEEEEcCCCcceeeecc-cccccc
Q 007890 73 PTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAH-YGMQRE 151 (586)
Q Consensus 73 P~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H-~~~q~~ 151 (586)
..+.+..|..|++.+++. +.- |+...+. -|+ +.-.-||..-...|.++++|+|+--|. .-+..-
T Consensus 140 n~lvlP~~~~v~~~~tS~--DVi-----Hsf~vP~----~~~----k~daiPG~~~~~~~~~~~~G~~~g~Cse~CG~~H 204 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAA--DVI-----HSWTVPS----LGV----KVDAVPGRLNQIGFTITRPGVFYGQCSEICGANH 204 (228)
T ss_pred ceEEEecCCEEEEEEEeC--Ccc-----ccccccc----cCc----ceecCCCceEEEEEEeCCCEEEEEEChhhcCcCc
Confidence 467788899999999887 322 4433321 121 233458998888999999999999886 222222
Q ss_pred CcceEEEEEECC
Q 007890 152 AGLYGSIRVSLP 163 (586)
Q Consensus 152 ~Gl~G~liV~~~ 163 (586)
.-|.+.+.|.++
T Consensus 205 s~M~~~v~vv~~ 216 (228)
T MTH00008 205 SFMPIVLEAVDT 216 (228)
T ss_pred cCceeEEEEECH
Confidence 446666666654
No 109
>PF14481 Fimbrial_PilY2: Type 4 fimbrial biogenesis protein PilY2; PDB: 3TDQ_A.
Probab=34.82 E-value=19 Score=29.91 Aligned_cols=15 Identities=40% Similarity=0.629 Sum_probs=9.2
Q ss_pred CCcE-EeecCCEEEEE
Q 007890 72 GPTI-QARQNDTVIVE 86 (586)
Q Consensus 72 gP~i-~v~~Gd~v~i~ 86 (586)
||.| .+++|..|-..
T Consensus 64 ~p~ifqvrpGsvVS~s 79 (118)
T PF14481_consen 64 GPVIFQVRPGSVVSFS 79 (118)
T ss_dssp EEGGGT--TT-EEEEE
T ss_pred CceEEEEcCCcEEEEe
Confidence 7888 99999887653
No 110
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=34.73 E-value=72 Score=27.96 Aligned_cols=50 Identities=20% Similarity=0.368 Sum_probs=34.0
Q ss_pred EEEEEEeecCCcceEEEEeCCCeeEEEecCCcccc----ceEEeEEEEccCceEEEE
Q 007890 252 TYRLRISSLTALSALSFQIEGHNMTVVEADGHNVE----PFVVQNLFIYSGETYSVL 304 (586)
Q Consensus 252 ~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~----P~~~~~l~l~pGqR~dVl 304 (586)
.|++||.|.+.. .+.|-+..+.+...||...+ .+....=.|.|||.+...
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y~ 85 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEYT 85 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEEe
Confidence 479999998744 56777788888877776321 233445578888876654
No 111
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=34.57 E-value=60 Score=23.05 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=31.4
Q ss_pred CCCCCccee-EEeCCCCEEEEEEEeCCceeeEEeecchhhhhc
Q 007890 518 LVNPIMKNT-VPVHRYGWTALRFRADNPGAWAFHCHIESHFYM 559 (586)
Q Consensus 518 ~~~p~~rDT-v~vpp~g~v~irf~adnpG~w~~HCHil~H~d~ 559 (586)
+..|..+-+ |..+.|....++++-+.-..+=+||..+.|.+.
T Consensus 3 ~~kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 3 VSKPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred CCCcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 344555554 335667888888888888999999999999763
No 112
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=34.22 E-value=91 Score=23.57 Aligned_cols=47 Identities=17% Similarity=0.456 Sum_probs=27.2
Q ss_pred EEEeCCcEEEEEEeecCCcceEEEEeCCCeeEEEecCCccccceEEeEEEEccCceEEE
Q 007890 245 ITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHNVEPFVVQNLFIYSGETYSV 303 (586)
Q Consensus 245 ~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGqR~dV 303 (586)
+.+.+|+..+||..... .+.+.+-.+++.. +|. .+-..|.+||++.+
T Consensus 2 ~~L~~g~~~~lr~~~~~-----~l~v~~G~vWlT~-~g~------~~D~~L~~G~~l~l 48 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQ-----RLRVESGRVWLTR-EGD------PDDYWLQAGDSLRL 48 (63)
T ss_pred EEeCCCceEEeEcCCCc-----EEEEccccEEEEC-CCC------CCCEEECCCCEEEe
Confidence 45668888888855533 3566666666643 442 23455666666554
No 113
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=33.89 E-value=1.4e+02 Score=29.16 Aligned_cols=70 Identities=14% Similarity=0.278 Sum_probs=49.9
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEE
Q 007890 461 VYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFR 540 (586)
Q Consensus 461 ~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~ 540 (586)
.+.++.|+.+++.+...+-. |.|.+-. .| ..+|.+ ||....+.|.
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi-------Hsf~iP~-------lg------------------~k~dai---PG~~~~~~~~ 185 (229)
T MTH00038 141 RLVLPYQTPIRVLVSSADVL-------HSWAVPS-------LG------------------VKMDAV---PGRLNQTTFF 185 (229)
T ss_pred eEEEecCeEEEEEEEECCcc-------ccccccc-------cC------------------ceeecC---CCceEEEEEE
Confidence 38899999999999887754 5544432 21 233433 6777788999
Q ss_pred eCCceeeEEeecchhhhhcCceEEE
Q 007890 541 ADNPGAWAFHCHIESHFYMGMGVVF 565 (586)
Q Consensus 541 adnpG~w~~HCHil~H~d~GM~~~~ 565 (586)
++.||.+...|--+--.....|-..
T Consensus 186 ~~~~G~~~g~Cse~CG~~Hs~M~~~ 210 (229)
T MTH00038 186 ISRTGLFYGQCSEICGANHSFMPIV 210 (229)
T ss_pred cCCCEEEEEEcccccCcCcCCCeEE
Confidence 9999999999997776655555433
No 114
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=33.63 E-value=2.8e+02 Score=28.87 Aligned_cols=60 Identities=25% Similarity=0.391 Sum_probs=29.3
Q ss_pred CCCCCcEEeecCCEEEEEEEeCCCCCCeeEE---ecceeeccC-------CCC-CCCC----ccc-cccCCCCCeEEEEE
Q 007890 69 RTPGPTIQARQNDTVIVELKNSLLTENVAIH---WHGIRQIGT-------PWA-DGTE----GVT-QCPILPGETFTYKF 132 (586)
Q Consensus 69 ~~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH---~HGl~~~~~-------~~~-DGv~----~~~-q~~i~pG~~~~Y~f 132 (586)
+.||=++++ .++|+|+ .+++..|- .-|++.... .+- |-++ -++ ..||+|||+.+.+.
T Consensus 259 ~vpgR~l~~------~l~VtN~-g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~pI~PGETrtl~V 331 (381)
T PF04744_consen 259 RVPGRTLTM------TLTVTNN-GDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSPIAPGETRTLTV 331 (381)
T ss_dssp ESSSSEEEE------EEEEEEE-SSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S-B-TT-EEEEEE
T ss_pred ecCCcEEEE------EEEEEcC-CCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCCcCCCceEEEEE
Confidence 467766654 4788898 77765431 123322211 000 1111 123 35999999999999
Q ss_pred EcC
Q 007890 133 VVD 135 (586)
Q Consensus 133 ~~~ 135 (586)
.++
T Consensus 332 ~a~ 334 (381)
T PF04744_consen 332 EAQ 334 (381)
T ss_dssp EEE
T ss_pred Eee
Confidence 884
No 115
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=33.54 E-value=3.3e+02 Score=23.80 Aligned_cols=93 Identities=15% Similarity=0.231 Sum_probs=58.5
Q ss_pred EEecC-CCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCC--------CCCCCCCCCC-CCCcceeEEeCC
Q 007890 462 YRLNF-NSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDI--------YNDPKKYNLV-NPIMKNTVPVHR 531 (586)
Q Consensus 462 ~~~~~-g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~--------~~~~~~~n~~-~p~~rDTv~vpp 531 (586)
+.++. ++.+.++|.|.+.+ |--.=||.+-+...+ .... ..+...+... ..++-.|=.|.+
T Consensus 18 i~V~a~~k~vtv~l~h~G~l--------pk~~MgHN~Vl~k~~--d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkligg 87 (125)
T TIGR02695 18 ISVPKSCKEFTVNLKHTGKL--------PKAVMGHNWVLAKSA--DMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGG 87 (125)
T ss_pred EEEcCCCcEEEEEEecCCcC--------chhccCccEEEeccc--cHHHHHHHHHhcccccCccCCCCcceEEEccccCC
Confidence 77786 58999999998643 222224554343322 1111 0011111111 234667888999
Q ss_pred CCEEEEEEEeC--Ccee-eEEeecchhhhhcCceEEE
Q 007890 532 YGWTALRFRAD--NPGA-WAFHCHIESHFYMGMGVVF 565 (586)
Q Consensus 532 ~g~v~irf~ad--npG~-w~~HCHil~H~d~GM~~~~ 565 (586)
|+...|.|.+. .+|. |.|=|----|.. .|-..+
T Consensus 88 Ges~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l 123 (125)
T TIGR02695 88 GEKTSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTV 123 (125)
T ss_pred CceEEEEEECCCCCCCCcceEEEcCCCcHH-hceEEE
Confidence 99999999985 5785 999999999986 465554
No 116
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=33.15 E-value=75 Score=33.78 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=46.9
Q ss_pred cEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccCCCCCeEEEEEEcCCCcceeeecc
Q 007890 74 TIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAH 145 (586)
Q Consensus 74 ~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H 145 (586)
+..++.|+.+++.|+|. + ..+.-.||+... .|+.- --+.|.-....+|.++++|.+||-|-
T Consensus 549 ~staps~~l~ef~Vkq~--D-EVt~l~tnld~V----ed~th----gfv~p~~~v~~~v~pq~tasvtf~a~ 609 (637)
T COG4263 549 TSTAPSFGLTEFKVKQG--D-EVTVLTTNLDEV----EDLTH----GFVIPNYGVNMEVKPQRTASVTFYAD 609 (637)
T ss_pred eeccCCCceEEEEEecC--c-EEEEEeccccee----ccccc----eeeeccCceEEEEccCCceEEEEEcc
Confidence 45788999999999998 2 456667888543 35544 34678888888899999999999986
No 117
>PF02102 Peptidase_M35: Deuterolysin metalloprotease (M35) family; InterPro: IPR001384 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M35 (deuterolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Deuterolysin is a microbial zinc-containing metalloprotease that shows some similarity to thermolysin []. The protein is expressed with a possible 19-residue signal sequence, a 155-residue propeptide, and an active peptide of 177 residues []. The latter contains an HEXXH motif towards the C terminus, but the other zinc ligands are as yet undetermined [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 1EB6_A.
Probab=32.25 E-value=15 Score=38.20 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=0.0
Q ss_pred eeEEecceeeccCCCCCCCCccccccCCCCCeEEEEEEcCCCcceeeec
Q 007890 96 VAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHA 144 (586)
Q Consensus 96 ~siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~ 144 (586)
.-+-|-|+..+ -.+++...-....|+||++.+-+|.+ +.|||...
T Consensus 78 ~~V~F~Gi~~~--~~~~~L~~d~F~~L~pG~sve~~fDi--A~~~dLs~ 122 (359)
T PF02102_consen 78 KEVPFTGIRLR--YDTSGLTEDAFQTLAPGESVEVEFDI--AETHDLSS 122 (359)
T ss_dssp -------------------------------------------------
T ss_pred cccccccEEEE--EecCCCCHHHceecCCCCeEEEEEcc--hheeecCC
Confidence 44667777654 23455555556789999999998854 55665544
No 118
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=32.23 E-value=1.6e+02 Score=28.58 Aligned_cols=68 Identities=12% Similarity=0.167 Sum_probs=48.4
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEE
Q 007890 461 VYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFR 540 (586)
Q Consensus 461 ~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~ 540 (586)
.+.++.|+.+++.+...+-. |.|+|-+.| ...|. -||....+.|.
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi--------------Hsf~ip~lg------------------~k~da---iPG~~~~~~~~ 185 (227)
T MTH00098 141 RVVLPMEMPIRMLISSEDVL--------------HSWAVPSLG------------------LKTDA---IPGRLNQTTLM 185 (227)
T ss_pred eEEecCCCEEEEEEEECccc--------------ccccccccc------------------cceec---CCCceEEEEEe
Confidence 38899999999999887653 445553332 22333 36777888999
Q ss_pred eCCceeeEEeecchhhhhcCceE
Q 007890 541 ADNPGAWAFHCHIESHFYMGMGV 563 (586)
Q Consensus 541 adnpG~w~~HCHil~H~d~GM~~ 563 (586)
++.||.+..-|.-.-......|-
T Consensus 186 ~~~~G~~~g~Cse~CG~~H~~M~ 208 (227)
T MTH00098 186 STRPGLYYGQCSEICGSNHSFMP 208 (227)
T ss_pred cCCcEEEEEECccccCcCcCCce
Confidence 99999999999986655445443
No 119
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=32.07 E-value=38 Score=34.96 Aligned_cols=45 Identities=22% Similarity=0.493 Sum_probs=22.3
Q ss_pred cccCCCCCeEEEEEEc--CCCcceeeeccccccccCcceEE---EEEECC
Q 007890 119 QCPILPGETFTYKFVV--DRPGTYLYHAHYGMQREAGLYGS---IRVSLP 163 (586)
Q Consensus 119 q~~i~pG~~~~Y~f~~--~~~Gt~wYH~H~~~q~~~Gl~G~---liV~~~ 163 (586)
...+..|++|.|+..+ ..+|+|--|.-...+-...+.|+ +.|++.
T Consensus 80 S~~le~G~~y~fki~lkar~pG~~hvh~~~nv~~~Gp~~Gpg~~v~i~g~ 129 (381)
T PF04744_consen 80 SVSLELGGTYEFKIVLKARRPGTWHVHPMLNVEDAGPIVGPGQWVTIEGS 129 (381)
T ss_dssp -B---TT-EEEEEEEEEE-S-EEEEEEEEEEETTTEEEEEEEEEEEEES-
T ss_pred eEEeecCCeeeEEEEEecccCccccceeeEeeccCCCCcCCceEEEEecc
Confidence 3578999998888876 78999744433334434445554 336543
No 120
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=32.07 E-value=1.1e+02 Score=27.55 Aligned_cols=70 Identities=11% Similarity=0.127 Sum_probs=38.2
Q ss_pred cceEEEEEEEEEEeeCCCCceeEEEEECCCC-CCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCC
Q 007890 40 ARIRRYKWEVKYEYKSPDCFRKVVITINGRT-PGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTE 115 (586)
Q Consensus 40 ~~~~~~~l~~~~~~~~~dg~~~~~~~~Ng~~-pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~ 115 (586)
.....|.++.++...... ...+.+-+.|.+ +|..-+. .|..++.+++.. .....++..|.. +....+|..
T Consensus 31 ~~~~~yf~tpse~~~~~~-~~g~~vrvgG~V~~gSi~~~-~~~~~~F~ltD~--~~~i~V~Y~G~l--Pd~F~eg~~ 101 (148)
T PRK13254 31 RQNIVFFYTPSEVAEGEA-PAGRRFRLGGLVEKGSVQRG-DGLTVRFVVTDG--NATVPVVYTGIL--PDLFREGQG 101 (148)
T ss_pred HhCCceeeCHHHHhcCCc-cCCCeEEEeEEEecCcEEeC-CCCEEEEEEEeC--CeEEEEEECCCC--CccccCCCE
Confidence 334456676665533322 122233344443 4433333 677888888776 456788888873 334556654
No 121
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=30.61 E-value=1.1e+02 Score=31.35 Aligned_cols=59 Identities=17% Similarity=0.163 Sum_probs=44.2
Q ss_pred EEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEe
Q 007890 462 YRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRA 541 (586)
Q Consensus 462 ~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~a 541 (586)
+.++.|+.|++.+...+-+ | .|+|-+.+ ...|.+ ||-...+.|.+
T Consensus 153 L~iP~g~pV~f~lTS~DVi-------H-------SF~IP~Lg------------------~K~dam---PG~~n~l~~~a 197 (315)
T PRK10525 153 IAFPANVPVYFKVTSNSVM-------N-------SFFIPRLG------------------SQIYAM---AGMQTRLHLIA 197 (315)
T ss_pred EEEecCCEEEEEEEEchhh-------h-------hhhhhhhC------------------CeeecC---CCceeEEEEEc
Confidence 7899999999999987764 4 55554332 223333 67778899999
Q ss_pred CCceeeEEeecchh
Q 007890 542 DNPGAWAFHCHIES 555 (586)
Q Consensus 542 dnpG~w~~HCHil~ 555 (586)
|.||.|.-.|--.-
T Consensus 198 ~~~G~Y~G~CaEyC 211 (315)
T PRK10525 198 NEPGTYDGISASYS 211 (315)
T ss_pred CCCEEEEEEChhhc
Confidence 99999999998554
No 122
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.53 E-value=5.2e+02 Score=25.16 Aligned_cols=76 Identities=12% Similarity=0.139 Sum_probs=49.7
Q ss_pred CcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccCCCCCeEEEEEEcCCCcceeeecc-cccccc
Q 007890 73 PTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAH-YGMQRE 151 (586)
Q Consensus 73 P~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H-~~~q~~ 151 (586)
..+.+..|..|++.++-. + .| |+...+. -|+ +.-.-||..-...|.++++|+|+-.|. .-+..-
T Consensus 140 n~lvlP~~~~v~~~~tS~--D---Vi--Hsf~ip~----~~~----k~da~PG~~~~~~~~~~~~G~~~g~C~e~CG~~H 204 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAE--D---VL--HSWAVPA----LGV----KMDAVPGRLNQTAFIASRPGVFYGQCSEICGANH 204 (230)
T ss_pred ceEEEecCcEEEEEEEeC--c---cc--cceeccc----cCC----ccccCCCceEEEEEEeCCceEEEEEChhhccccc
Confidence 467888888888888776 2 22 4444331 122 233458999999999999999999997 222223
Q ss_pred CcceEEEEEECC
Q 007890 152 AGLYGSIRVSLP 163 (586)
Q Consensus 152 ~Gl~G~liV~~~ 163 (586)
..|.+.+.|.++
T Consensus 205 ~~M~~~v~vv~~ 216 (230)
T MTH00129 205 SFMPIVVEAVPL 216 (230)
T ss_pred cCCcEEEEEECH
Confidence 456667766654
No 123
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=30.02 E-value=44 Score=27.81 Aligned_cols=29 Identities=17% Similarity=0.420 Sum_probs=25.2
Q ss_pred EEEECCCCCCCcEEeecCCEEEEEEEeCC
Q 007890 63 VITINGRTPGPTIQARQNDTVIVELKNSL 91 (586)
Q Consensus 63 ~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l 91 (586)
-..|||+.-=|.=.|+.||.|+|++.|.+
T Consensus 35 rV~vNG~~aKpS~~VK~GD~l~i~~~~~~ 63 (100)
T COG1188 35 RVKVNGQRAKPSKEVKVGDILTIRFGNKE 63 (100)
T ss_pred eEEECCEEcccccccCCCCEEEEEeCCcE
Confidence 35689987788899999999999999983
No 124
>PF15415 DUF4622: Protein of unknown function (DUF4622)
Probab=29.88 E-value=2.9e+02 Score=26.86 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=41.2
Q ss_pred EEEEeCCcEEEEEEeecCCcce--EEEEeCCCeeEEEecCCccccc----eE--------EeEEEEcc----CceEEEEE
Q 007890 244 VITVIPGKTYRLRISSLTALSA--LSFQIEGHNMTVVEADGHNVEP----FV--------VQNLFIYS----GETYSVLI 305 (586)
Q Consensus 244 ~~~v~~G~~~rlRliN~g~~~~--~~~~i~gh~~~via~DG~~~~P----~~--------~~~l~l~p----GqR~dVlv 305 (586)
.+.+++| +|.||+|.-+-... ....| +.-+.++|.|+.+.+- .. +..+.|.| -.|+.+.+
T Consensus 95 PLyl~aG-tY~F~~iSPAka~~~dgk~~I-~NGeYl~aTd~rytqT~st~~~I~~i~~~nvq~i~LnPii~qtaRm~Fti 172 (310)
T PF15415_consen 95 PLYLNAG-TYYFRMISPAKASNSDGKMNI-DNGEYLYATDNRYTQTYSTPCPISKINENNVQYIYLNPIINQTARMQFTI 172 (310)
T ss_pred ceEEecc-eEEEEEeccccccccCceEEe-CCceEEEEcCCceeEEeeeeeeeEeeccCCeeEEEeChhhhheeEEEEEE
Confidence 5789999 79999998764322 33333 4557899999998752 21 22344443 56777777
Q ss_pred EeCC
Q 007890 306 KADQ 309 (586)
Q Consensus 306 ~~~~ 309 (586)
+..+
T Consensus 173 ~~g~ 176 (310)
T PF15415_consen 173 HKGE 176 (310)
T ss_pred ecCC
Confidence 6654
No 125
>PF03443 Glyco_hydro_61: Glycosyl hydrolase family 61; InterPro: IPR005103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The only known activity within this family is that of endoglucanase (3.2.1.4 from EC) GH61 from CAZY ; PDB: 4EIS_B 2VTC_A 4EIR_B 3EJA_D 3EII_A.
Probab=29.22 E-value=1.2e+02 Score=29.41 Aligned_cols=93 Identities=16% Similarity=0.202 Sum_probs=47.0
Q ss_pred eeecCCCCCCCceEEEEeCCcEEEEEEeecC-------CcceEEEEe---------CCCeeEEEecCCccccce---EEe
Q 007890 231 IICNETNPECSPYVITVIPGKTYRLRISSLT-------ALSALSFQI---------EGHNMTVVEADGHNVEPF---VVQ 291 (586)
Q Consensus 231 ~~~~~~~~~~~~~~~~v~~G~~~rlRliN~g-------~~~~~~~~i---------~gh~~~via~DG~~~~P~---~~~ 291 (586)
..||.........+++|++|+++-|..-+.. ....+--.. .+..+.=|.-+|....+. ...
T Consensus 49 i~Cn~~~~~~~~~~~~V~AG~~I~f~w~~~~~~~~H~GP~~~Yma~~~~~~~~~d~~~~~WFKI~e~g~~~~~~~~~W~~ 128 (218)
T PF03443_consen 49 IRCNKGASPAATKAATVAAGDTITFEWHHGGWPHSHPGPVLVYMAKCPGDCATWDGSGLDWFKIYEDGLDDGGGKPGWAT 128 (218)
T ss_dssp HHHSTTTB--SS-EEEEETTSEEEEEEESST-ETTSSS-EEEEEEE-TSTTTT--CCCCEEEEEEEE-BCTTSSE-BBCC
T ss_pred eeCCCCCCCCccceeEeCCCCEEEEEEEecccCcCCCcceEEEeecCCcccccccCCCCeEEEEeeecccCCCCccceec
Confidence 3677554444445679999999998888642 111111111 122444444444332221 111
Q ss_pred EEEEccCceEEEEEEeCCCCCCceEEEEEeecC
Q 007890 292 NLFIYSGETYSVLIKADQNPTRNYWATTNIVSR 324 (586)
Q Consensus 292 ~l~l~pGqR~dVlv~~~~~~~g~y~l~~~~~~~ 324 (586)
...+..+.+++|.|-.+- ++|+|-||.+...-
T Consensus 129 ~~l~~~~~~~~~~IP~~l-~~G~YLlR~E~IaL 160 (218)
T PF03443_consen 129 DKLIANNGSWTFTIPKNL-PPGQYLLRHEIIAL 160 (218)
T ss_dssp HHHHTTTCEEEEE--TTB-BSEEEEEEEEEEE-
T ss_pred chhhccCCceEEEeCCCC-CCCCceEEecceee
Confidence 112245677777776544 68999999877543
No 126
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.72 E-value=1.7e+02 Score=28.48 Aligned_cols=66 Identities=20% Similarity=0.306 Sum_probs=46.8
Q ss_pred EEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEe
Q 007890 462 YRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRA 541 (586)
Q Consensus 462 ~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~a 541 (586)
+.++.|+.+++.+...+-. | .|+|=+.| ..+|.+ ||-...+.|.+
T Consensus 142 l~lP~~~~v~~~~tS~DVi-------H-------sf~vp~l~------------------~k~dav---PG~~~~~~~~~ 186 (227)
T MTH00154 142 LVLPMNTQIRILITAADVI-------H-------SWTVPSLG------------------VKVDAV---PGRLNQLNFLI 186 (227)
T ss_pred EEEecCCEEEEEEEcCchh-------h-------heeccccC------------------CeeecC---CCceEEEEEEE
Confidence 8899999999999887654 4 44443321 233443 67777889999
Q ss_pred CCceeeEEeecchhhhhcCce
Q 007890 542 DNPGAWAFHCHIESHFYMGMG 562 (586)
Q Consensus 542 dnpG~w~~HCHil~H~d~GM~ 562 (586)
+.||.+.--|--+==...+.|
T Consensus 187 ~~~G~y~g~Cse~CG~~H~~M 207 (227)
T MTH00154 187 NRPGLFFGQCSEICGANHSFM 207 (227)
T ss_pred cCceEEEEEeechhCcCccCC
Confidence 999999999986654443444
No 127
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.48 E-value=1.8e+02 Score=28.26 Aligned_cols=62 Identities=16% Similarity=0.244 Sum_probs=46.0
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEE
Q 007890 461 VYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFR 540 (586)
Q Consensus 461 ~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~ 540 (586)
.+.++.|+.+++.+...+-. |.|+|-+.| ...|. -||....+.|.
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi--------------Hsf~ip~~~------------------~k~da---~PG~~~~~~~~ 185 (230)
T MTH00129 141 RMVVPVESPIRVLVSAEDVL--------------HSWAVPALG------------------VKMDA---VPGRLNQTAFI 185 (230)
T ss_pred eEEEecCcEEEEEEEeCccc--------------cceeccccC------------------Ccccc---CCCceEEEEEE
Confidence 38899999999999887643 566665543 22333 37778888999
Q ss_pred eCCceeeEEeecchhhh
Q 007890 541 ADNPGAWAFHCHIESHF 557 (586)
Q Consensus 541 adnpG~w~~HCHil~H~ 557 (586)
++.||.+...|.-+=-.
T Consensus 186 ~~~~G~~~g~C~e~CG~ 202 (230)
T MTH00129 186 ASRPGVFYGQCSEICGA 202 (230)
T ss_pred eCCceEEEEEChhhccc
Confidence 99999999999975433
No 128
>PRK09838 periplasmic copper-binding protein; Provisional
Probab=27.71 E-value=3.8e+02 Score=23.05 Aligned_cols=23 Identities=9% Similarity=0.102 Sum_probs=17.6
Q ss_pred EeecCCEEEEEEEeCCCCCCeeEE
Q 007890 76 QARQNDTVIVELKNSLLTENVAIH 99 (586)
Q Consensus 76 ~v~~Gd~v~i~v~N~l~~~~~siH 99 (586)
.+++||+|++++... .+..+.++
T Consensus 88 ~lk~G~~V~F~~~~~-~~~~~i~~ 110 (115)
T PRK09838 88 EIKTGDKVAFNFVQQ-GNLSLLQD 110 (115)
T ss_pred cCCCCCEEEEEEEEc-CCcEEEEE
Confidence 579999999999988 55554433
No 129
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=27.23 E-value=1.7e+02 Score=28.38 Aligned_cols=76 Identities=12% Similarity=0.092 Sum_probs=50.4
Q ss_pred CcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccCCCCCeEEEEEEcCCCcceeeecc--ccccc
Q 007890 73 PTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAH--YGMQR 150 (586)
Q Consensus 73 P~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H--~~~q~ 150 (586)
..|++..|..|+++++-. +.-+|...-.+. . +.-.-||..-+..|+++++|+|.=.|- -+.+
T Consensus 139 nel~lP~g~pV~~~ltS~--DViHSF~VP~l~------------~-K~DaiPG~~n~~~~~~~~~G~y~g~CaE~CG~~- 202 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSN--SVMNSFFIPQLG------------S-QIYAMAGMQTKLHLIANEPGVYDGISANYSGPG- 202 (226)
T ss_pred ceEEEECCCEEEEEEEEC--chhhhhhhhhcC------------C-eeecCCCceEEEEEEeCCCEEEEEEchhhcCcC-
Confidence 578999999999998887 322222221111 1 123458988888999999999998886 2222
Q ss_pred cCcceEEEEEECCC
Q 007890 151 EAGLYGSIRVSLPE 164 (586)
Q Consensus 151 ~~Gl~G~liV~~~~ 164 (586)
-..|.+-++|.+++
T Consensus 203 Ha~M~~~V~v~~~~ 216 (226)
T TIGR01433 203 FSGMKFKAIATDRA 216 (226)
T ss_pred ccCCeEEEEEECHH
Confidence 24477777777643
No 130
>PF09394 Inhibitor_I42: Chagasin family peptidase inhibitor I42; InterPro: IPR018990 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Chagasin reversible inhibitor of papain-like cysteine proteases []. Chagasin has a beta-barrel structure, which is a unique variant of the immunoglobulin fold with homology to human CD8alpha [, ].; PDB: 2NQD_A 2NNR_A 2H7W_B 3E1Z_A 3CBK_B 3CBJ_B 2OUL_B 2FO8_A 2WGN_B 2C34_A ....
Probab=26.97 E-value=2e+02 Score=22.96 Aligned_cols=62 Identities=19% Similarity=0.284 Sum_probs=34.0
Q ss_pred EEeecCCEEEEEEEeCCCCCCeeEEecc----eeeccCCCC-CCCCccccccCCCCCeEEEEEEcCCCcce
Q 007890 75 IQARQNDTVIVELKNSLLTENVAIHWHG----IRQIGTPWA-DGTEGVTQCPILPGETFTYKFVVDRPGTY 140 (586)
Q Consensus 75 i~v~~Gd~v~i~v~N~l~~~~~siH~HG----l~~~~~~~~-DGv~~~~q~~i~pG~~~~Y~f~~~~~Gt~ 140 (586)
|.++.||.+.|.|.-+ ......=+... +......+. +..+ ...+..|....+.|++..+|+.
T Consensus 1 I~v~~g~~~~I~L~~n-pstGY~W~~~~~~~~l~l~~~~~~~~~~~---~~~vG~~g~~~f~f~a~~~G~~ 67 (92)
T PF09394_consen 1 ITVKVGDTFEIELPEN-PSTGYSWSLSSDSDGLQLVSEEYIPDNSP---SGLVGAPGTRTFTFKALKPGTT 67 (92)
T ss_dssp -EEETTSEEEEEEEEB-CCGTBEEEECTSTTTEEEEEEEEEESSTS---STSSTSSEEEEEEEEESSSEEE
T ss_pred CeecCCCEEEEEECCC-CCCCeEEEEecCCCeEEEcCCcEEeCCCC---cCCCCCCcEEEEEEEEecCeeE
Confidence 6899999999999988 54333322222 211110000 0000 0134456677888988888875
No 131
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=26.88 E-value=4e+02 Score=23.84 Aligned_cols=63 Identities=21% Similarity=0.270 Sum_probs=42.1
Q ss_pred cEEEEEEeecCCcceEEEEeCCCeeEEEecCCccccceEE-------eEEEEccCceE-EEEEEeCCCCCCceEEEE
Q 007890 251 KTYRLRISSLTALSALSFQIEGHNMTVVEADGHNVEPFVV-------QNLFIYSGETY-SVLIKADQNPTRNYWATT 319 (586)
Q Consensus 251 ~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~P~~~-------~~l~l~pGqR~-dVlv~~~~~~~g~y~l~~ 319 (586)
.+|-|-+-|.|.. .+.++...++|+ +||+.+.|..+ +.+.|.|||-- ++.+.... .|.-.+.+
T Consensus 70 ~t~t~yiKNtG~~---~~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~~l--SGyhri~V 140 (154)
T COG3354 70 YTYTFYIKNTGSD---SIAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNEAL--SGYHRIVV 140 (154)
T ss_pred eEEEEEEecCCCc---ccccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEeccCC--CcceEEEE
Confidence 3678889998854 466777777775 79988766432 45778999987 55555443 45444443
No 132
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=26.17 E-value=1.9e+02 Score=24.63 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=27.6
Q ss_pred EEEEEEeecCCc-ceEEEEeCCCe-eEEEecCCccccceEEeEEEEccCceEEEEEEeC
Q 007890 252 TYRLRISSLTAL-SALSFQIEGHN-MTVVEADGHNVEPFVVQNLFIYSGETYSVLIKAD 308 (586)
Q Consensus 252 ~~rlRliN~g~~-~~~~~~i~gh~-~~via~DG~~~~P~~~~~l~l~pGqR~dVlv~~~ 308 (586)
.|+++|+|-+.. ..+.+.++|.. +++.. ....+.|.+|+..++.|...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~---------~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQG---------PENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE-E---------S--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEEC---------CCcceEECCCCEEEEEEEEE
Confidence 489999999976 34677776632 33311 33568888988877766654
No 133
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=24.44 E-value=1.5e+02 Score=26.52 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=22.0
Q ss_pred ccCCCCCeEEEEEEc----CCCcceeeecc
Q 007890 120 CPILPGETFTYKFVV----DRPGTYLYHAH 145 (586)
Q Consensus 120 ~~i~pG~~~~Y~f~~----~~~Gt~wYH~H 145 (586)
.||+||.+++..+.. ...|+|.|++-
T Consensus 97 ~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~ 126 (146)
T PF10989_consen 97 EPVPPGTTVTVVLSPVRNPRSGGTYQFNVT 126 (146)
T ss_pred CCCCCCCEEEEEEEeeeCCCCCCeEEEEEE
Confidence 689999999999954 35699999987
No 134
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.36 E-value=2.1e+02 Score=27.91 Aligned_cols=70 Identities=11% Similarity=0.164 Sum_probs=47.4
Q ss_pred EEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEEe
Q 007890 462 YRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFRA 541 (586)
Q Consensus 462 ~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~a 541 (586)
..++.|+.+++.+...+-. |. |+|=+.| ..+|.+ ||-.-.+.|.+
T Consensus 145 l~lP~~~~v~~~itS~DVi-------HS-------f~vP~lg------------------~K~Dav---PGr~n~~~~~~ 189 (231)
T MTH00080 145 CVLPCDTNIRFCITSSDVI-------HS-------WALPSLS------------------IKMDAM---SGILSTLCYSF 189 (231)
T ss_pred eEeecCcEEEEEEEeCccc-------cc-------ccccccC------------------ceeecc---CCceEEEEEEE
Confidence 7899999999999987754 54 4443321 234444 56677888999
Q ss_pred CCceeeEEeecchhhhhc-CceEEEe
Q 007890 542 DNPGAWAFHCHIESHFYM-GMGVVFA 566 (586)
Q Consensus 542 dnpG~w~~HCHil~H~d~-GM~~~~~ 566 (586)
+.||.+.--|--.==... -|-..++
T Consensus 190 ~~~G~y~g~CsE~CG~~Hs~M~~~v~ 215 (231)
T MTH00080 190 PMPGVFYGQCSEICGANHSFMPIAVE 215 (231)
T ss_pred cCceEEEEEehhhcCcCccCCEEEEE
Confidence 999999999985543322 3444443
No 135
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=24.34 E-value=6.8e+02 Score=24.50 Aligned_cols=76 Identities=13% Similarity=0.102 Sum_probs=47.4
Q ss_pred CcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccCCCCCeEEEEEEcCCCcceeeecc-cccccc
Q 007890 73 PTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAH-YGMQRE 151 (586)
Q Consensus 73 P~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H-~~~q~~ 151 (586)
..|.+..|..|++.++-. +.-+|.....+... .| .-||..-...|.++++|.|+-.|. .-+..-
T Consensus 151 n~lvlP~~~~v~~~~tS~--DViHsf~iP~lgvK----~D---------aiPG~~n~~~~~~~~~G~y~g~C~e~CG~~H 215 (240)
T MTH00023 151 NRLVVPINTHVRILVTGA--DVLHSFAVPSLGLK----ID---------AVPGRLNQTGFFIKRPGVFYGQCSEICGANH 215 (240)
T ss_pred ceEEEecCCEEEEEEEcC--CcccceeecccCce----ee---------cCCCcceeEEEEcCCCEEEEEEchhhcCcCc
Confidence 458888888888888776 33233222222111 22 347888888899999999999997 211222
Q ss_pred CcceEEEEEECC
Q 007890 152 AGLYGSIRVSLP 163 (586)
Q Consensus 152 ~Gl~G~liV~~~ 163 (586)
.-|.+.+.|.++
T Consensus 216 s~M~~~v~vv~~ 227 (240)
T MTH00023 216 SFMPIVIEAVSL 227 (240)
T ss_pred cCCeEEEEEECH
Confidence 346666666654
No 136
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=24.01 E-value=3.4e+02 Score=26.38 Aligned_cols=68 Identities=12% Similarity=0.200 Sum_probs=48.3
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEE
Q 007890 461 VYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFR 540 (586)
Q Consensus 461 ~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~ 540 (586)
.+.++.|+.|++.+.+.+- .|.|.+-+... ..| .-||....+.|.
T Consensus 141 ~lvlP~~~~v~~~~tS~DV-------iHsf~vP~~~~-------------------------k~d---aiPG~~~~~~~~ 185 (228)
T MTH00008 141 RAVLPMQTEIRVLVTAADV-------IHSWTVPSLGV-------------------------KVD---AVPGRLNQIGFT 185 (228)
T ss_pred eEEEecCCEEEEEEEeCCc-------cccccccccCc-------------------------cee---cCCCceEEEEEE
Confidence 3889999999999998765 35554433322 122 236777888999
Q ss_pred eCCceeeEEeecchhhhhcCceE
Q 007890 541 ADNPGAWAFHCHIESHFYMGMGV 563 (586)
Q Consensus 541 adnpG~w~~HCHil~H~d~GM~~ 563 (586)
++.||.+..-|.-+=......|.
T Consensus 186 ~~~~G~~~g~Cse~CG~~Hs~M~ 208 (228)
T MTH00008 186 ITRPGVFYGQCSEICGANHSFMP 208 (228)
T ss_pred eCCCEEEEEEChhhcCcCccCce
Confidence 99999999999877655545443
No 137
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=23.79 E-value=4e+02 Score=22.97 Aligned_cols=68 Identities=19% Similarity=0.259 Sum_probs=37.1
Q ss_pred EECCCCCCCcEEeecCCEEEEEEEe--CCCCCCeeEEecce----eec-cCCCCCCCCccccccCCCCCeEEEEEEc
Q 007890 65 TINGRTPGPTIQARQNDTVIVELKN--SLLTENVAIHWHGI----RQI-GTPWADGTEGVTQCPILPGETFTYKFVV 134 (586)
Q Consensus 65 ~~Ng~~pgP~i~v~~Gd~v~i~v~N--~l~~~~~siH~HGl----~~~-~~~~~DGv~~~~q~~i~pG~~~~Y~f~~ 134 (586)
.++|- ++..=.+++|..+.+.+.= +-.........||. ..+ .-+..||=-. ..|||.+|+.++|.+..
T Consensus 13 ~V~~C-~~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~-l~CPl~~G~~~~y~~~~ 87 (120)
T cd00918 13 EVDGC-SGDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKY-VKCPIKKGQHYDIKYTW 87 (120)
T ss_pred EeCCC-CCCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCccc-EeCCCcCCcEEEEEEee
Confidence 33443 3445567788876666542 21222334444543 322 1123455322 37999999999998865
No 138
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=23.29 E-value=4.1e+02 Score=22.89 Aligned_cols=61 Identities=21% Similarity=0.354 Sum_probs=33.3
Q ss_pred CcEEeecCCEEEEEEEeCCCCC-----CeeEEec--ceeeccC-CCCCCCCcc-ccccCCCCCeEEEEEEc
Q 007890 73 PTIQARQNDTVIVELKNSLLTE-----NVAIHWH--GIRQIGT-PWADGTEGV-TQCPILPGETFTYKFVV 134 (586)
Q Consensus 73 P~i~v~~Gd~v~i~v~N~l~~~-----~~siH~H--Gl~~~~~-~~~DGv~~~-~q~~i~pG~~~~Y~f~~ 134 (586)
..=.+++|+.+.+++.=. ..+ .+.+|+. |+..+-. ...|+=... ..|||.+|+.++|.+..
T Consensus 22 ~PC~l~rG~~~~~~i~F~-~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~ 91 (123)
T cd00916 22 LPCKLKRGSTAKVSIDFT-PNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSL 91 (123)
T ss_pred CCCEEECCCEEEEEEEEE-cCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEee
Confidence 444667787766665422 221 2334433 5443211 123432121 46999999999999865
No 139
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.20 E-value=7e+02 Score=24.25 Aligned_cols=125 Identities=10% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhccccccccceEEEEEEEEEEeeCCCCceeEEEEECCC-----------------------CCCCcEE
Q 007890 20 NLLALCVLIFSLANIVPMAEARIRRYKWEVKYEYKSPDCFRKVVITINGR-----------------------TPGPTIQ 76 (586)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dg~~~~~~~~Ng~-----------------------~pgP~i~ 76 (586)
.+.++++++.++.++...........++.+... .+.-.+.|.+. --...+.
T Consensus 70 ~~il~~l~~~s~~~l~~~~~~~~~~l~Ikvig~------QW~W~y~Y~~~~~~~~~s~~~~~~~~~~~~~~ll~~~n~lv 143 (230)
T MTH00185 70 AIILIMIALPSLRILYLMDEINDPHLTIKAMGH------QWYWSYEYTDYEQLEFDSYMTPTQDLTPGQFRLLETDHRMV 143 (230)
T ss_pred HHHHHHHHHHHHHHHHHhhhccccceEEEEEEE------EeEEEEEcCCCCCccccccccccccccCCCccccccCCeEE
Q ss_pred eecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccCCCCCeEEEEEEcCCCcceeeecc-ccccccCcce
Q 007890 77 ARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAH-YGMQREAGLY 155 (586)
Q Consensus 77 v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H-~~~q~~~Gl~ 155 (586)
+..|..|++.++-. +.-++.-.-++... .-.-||..-...+.++++|+|+-.|. .-+..-.-|.
T Consensus 144 lP~~~~v~~~~tS~--DViHsf~iP~lg~k-------------~daiPG~~~~~~~~~~~~G~~~g~Cse~CG~~Hs~M~ 208 (230)
T MTH00185 144 VPMESPIRVLITAE--DVLHSWTVPALGVK-------------MDAVPGRLNQATFIISRPGLYYGQCSEICGANHSFMP 208 (230)
T ss_pred EecCCEEEEEEEcC--cccccccccccCce-------------eEecCCceEEEEEEeCCcEEEEEEchhhcCcCcCCCe
Q ss_pred EEEEEECCCC
Q 007890 156 GSIRVSLPEG 165 (586)
Q Consensus 156 G~liV~~~~~ 165 (586)
..+.|.++++
T Consensus 209 ~~v~vv~~~~ 218 (230)
T MTH00185 209 IVVEAVPLEH 218 (230)
T ss_pred EEEEEECHHH
No 140
>COG3218 ABC-type uncharacterized transport system, auxiliary component [General function prediction only]
Probab=23.13 E-value=1.8e+02 Score=27.49 Aligned_cols=69 Identities=22% Similarity=0.229 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHhhccccccccceEEEEEEEEEEeeC--CCCceeEEEEECCCCCCCc-EEeecCCEEEEEEEeC
Q 007890 16 MKILNLLALCVLIFSLANIVPMAEARIRRYKWEVKYEYKS--PDCFRKVVITINGRTPGPT-IQARQNDTVIVELKNS 90 (586)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~dg~~~~~~~~Ng~~pgP~-i~v~~Gd~v~i~v~N~ 90 (586)
.+.+++.+++++.+.++.| .........|.|.+...... +.++..++.. +.|+ +++-.++++.|+..+.
T Consensus 8 ~~~~~l~~~la~~a~L~gC-~~~~~p~~~~~l~~~~~~~~~~~~~~~~qlli-----a~p~a~kal~s~rivV~~~~g 79 (205)
T COG3218 8 LRRLSLAAALALAATLAGC-GPEAAPNDTYSLSVHPPVDSNGPKRKTWQLLI-----ARPTALKALDSPRIVVRPSRG 79 (205)
T ss_pred HHHHHHHHHHHHHHHHhcc-CCCCCCCceeeccCCCcccCCCCcccceeEEe-----cCCcccccccCCceEEecCcc
Confidence 3444444444444444433 23556667788886654433 4444444432 4554 7888888888887665
No 141
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.10 E-value=2e+02 Score=27.86 Aligned_cols=62 Identities=19% Similarity=0.336 Sum_probs=44.7
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEE
Q 007890 461 VYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFR 540 (586)
Q Consensus 461 ~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~ 540 (586)
.+.++.|+.+++.+...+-. |. |+|=+.| ...|.+ ||-...+.|.
T Consensus 141 ~l~lP~~~~v~~~~tS~DVi-------Hs-------f~vP~lg------------------~k~dai---PG~~n~~~~~ 185 (225)
T MTH00168 141 RLVLPMDSKIRVLVTSADVL-------HS-------WTLPSLG------------------LKMDAV---PGRLNQLAFL 185 (225)
T ss_pred eEEEecCCEEEEEEEeCChh-------hc-------ccccccc------------------ccccCC---CCeEEEEEEE
Confidence 37899999999999987754 54 4443322 223433 6777788999
Q ss_pred eCCceeeEEeecchhhh
Q 007890 541 ADNPGAWAFHCHIESHF 557 (586)
Q Consensus 541 adnpG~w~~HCHil~H~ 557 (586)
++.||.+---|.-+-=.
T Consensus 186 ~~~~G~~~g~CsE~CG~ 202 (225)
T MTH00168 186 SSRPGSFYGQCSEICGA 202 (225)
T ss_pred cCCCEEEEEEcccccCc
Confidence 99999999999866533
No 142
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=22.44 E-value=2.3e+02 Score=25.74 Aligned_cols=73 Identities=14% Similarity=0.150 Sum_probs=40.2
Q ss_pred cccceEEEEEEEEEEeeCCCCceeEEEEECCC-CCCCcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCC
Q 007890 38 AEARIRRYKWEVKYEYKSPDCFRKVVITINGR-TPGPTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTE 115 (586)
Q Consensus 38 ~~~~~~~~~l~~~~~~~~~dg~~~~~~~~Ng~-~pgP~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~ 115 (586)
+-.....|-++.++....+.- ....+-+.|. .+|-..|-..+-.|+.+++- ......++..|+- +.-+.+|..
T Consensus 29 al~~n~~yF~tpsEv~~~~~~-~~~~~RlGG~V~~GSv~r~~~~~~v~F~vtD--~~~~v~V~Y~Gil--PDlFrEGqg 102 (155)
T PRK13159 29 ALQRNMSYLFTPSQVRAGAAA-GYQQFRLGGMVKAGSIQRAADSLKVSFTVID--KNAATQVEYTGIL--PDLFRDNQS 102 (155)
T ss_pred HhhhCceEEECHHHHhcCCcc-cCCeEEEccEEecCcEEEcCCCcEEEEEEEc--CCcEEEEEEccCC--CccccCCCe
Confidence 334445777888775443221 1244555565 46666563233366777663 3567788888873 234455544
No 143
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=22.33 E-value=4.2e+02 Score=30.41 Aligned_cols=64 Identities=14% Similarity=0.269 Sum_probs=41.3
Q ss_pred CCCcEEeec---CCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccCCCCCeEEEEEEcCCCcceeee
Q 007890 71 PGPTIQARQ---NDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYH 143 (586)
Q Consensus 71 pgP~i~v~~---Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH 143 (586)
+.|.++++. ...|.|+|.|. ...+..+|..-.. +.++.+ .+..|.+|++.+..|.+...+ -||.
T Consensus 592 ~~~~~~~~~d~a~G~L~L~L~N~-G~~a~~ftV~d~~-----Y~~~~p--r~ytV~aG~~~~~~w~l~~s~-GWYD 658 (690)
T TIGR03396 592 AVPEVRVCYDVANGNLYLTLSNA-GRSPVTVTVTDNA-----YGGAGP--RTVTVAPGQRVELHWDLSASG-GWYD 658 (690)
T ss_pred CCCceEEEEecCCCEEEEEEEeC-CCCcEEEEEEeCC-----CCCCCC--EEEEECCCCEEEEEEeccCCC-CceE
Confidence 446666644 44799999999 7888887765321 112222 135688999998888765444 5664
No 144
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=22.31 E-value=95 Score=27.83 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=20.0
Q ss_pred eCCCCEEEEEEE-eCCc---eeeEEeecc
Q 007890 529 VHRYGWTALRFR-ADNP---GAWAFHCHI 553 (586)
Q Consensus 529 vpp~g~v~irf~-adnp---G~w~~HCHi 553 (586)
|+||..+.|.++ ..|| |.|.|+|=.
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 689999999995 3455 899999954
No 145
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.82 E-value=4.3e+02 Score=25.63 Aligned_cols=68 Identities=15% Similarity=0.211 Sum_probs=48.9
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEE
Q 007890 461 VYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFR 540 (586)
Q Consensus 461 ~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~ 540 (586)
.+.++.|+.+++.+...+-. |.|+|-+.| ..+|. -||..-.+.|.
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi--------------Hsf~vP~lg------------------~K~Da---vPG~~n~~~~~ 185 (227)
T MTH00117 141 RMVIPMESPIRILITAEDVL--------------HSWAVPSLG------------------VKTDA---VPGRLNQTSFI 185 (227)
T ss_pred eEEEecCceEEEEEEecchh--------------hcccccccC------------------ceeEe---cCCceEEEEEE
Confidence 38899999999999887653 455554332 22343 36777888999
Q ss_pred eCCceeeEEeecchhhhhcCceE
Q 007890 541 ADNPGAWAFHCHIESHFYMGMGV 563 (586)
Q Consensus 541 adnpG~w~~HCHil~H~d~GM~~ 563 (586)
++.||.+.--|--+=-.....|.
T Consensus 186 ~~~~G~y~g~CsE~CG~~Hs~M~ 208 (227)
T MTH00117 186 TTRPGVFYGQCSEICGANHSFMP 208 (227)
T ss_pred EcccceEEEEeccccccCccCCe
Confidence 99999999999876655545443
No 146
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=21.68 E-value=3.8e+02 Score=26.25 Aligned_cols=69 Identities=19% Similarity=0.251 Sum_probs=48.7
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEE
Q 007890 461 VYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFR 540 (586)
Q Consensus 461 ~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~ 540 (586)
.+.++.|+.+++.+...+-. |.|. |=+.| ..+|.+ ||-.-.+.|.
T Consensus 152 ~lvlP~~~~v~~~~tS~DVi-------Hsf~-------iP~lg------------------vK~Dai---PG~~n~~~~~ 196 (240)
T MTH00023 152 RLVVPINTHVRILVTGADVL-------HSFA-------VPSLG------------------LKIDAV---PGRLNQTGFF 196 (240)
T ss_pred eEEEecCCEEEEEEEcCCcc-------ccee-------ecccC------------------ceeecC---CCcceeEEEE
Confidence 38899999999999987754 5544 43321 233433 5666778899
Q ss_pred eCCceeeEEeecchhhhhcCceEE
Q 007890 541 ADNPGAWAFHCHIESHFYMGMGVV 564 (586)
Q Consensus 541 adnpG~w~~HCHil~H~d~GM~~~ 564 (586)
++.||.+.-.|.-.--.....|..
T Consensus 197 ~~~~G~y~g~C~e~CG~~Hs~M~~ 220 (240)
T MTH00023 197 IKRPGVFYGQCSEICGANHSFMPI 220 (240)
T ss_pred cCCCEEEEEEchhhcCcCccCCeE
Confidence 999999999999776655554443
No 147
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=21.61 E-value=2.4e+02 Score=27.40 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=35.2
Q ss_pred ceEEEEeCCcEEEEEEeecCCcceEEEEeCCCeeEEEecCCccccceEEeEEEEccCceEEEEEEeC
Q 007890 242 PYVITVIPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHNVEPFVVQNLFIYSGETYSVLIKAD 308 (586)
Q Consensus 242 ~~~~~v~~G~~~rlRliN~g~~~~~~~~i~gh~~~via~DG~~~~P~~~~~l~l~pGqR~dVlv~~~ 308 (586)
++.+++++|+...+|++..+.. -.|...+.-+-++..+-++.....|.+....|.-+.++..
T Consensus 75 PPl~rl~pg~~q~vRii~~~~l-----p~drEs~f~l~v~~IP~~~~~~~~l~ia~r~~iklfyRP~ 136 (230)
T PRK09918 75 PPVARVEPGQSQQVRFILKSGS-----PLNTEHLLRVSFEGVPPKPGGKNKVVMPIRQDLPVLIQPA 136 (230)
T ss_pred CCeEEECCCCceEEEEEECCCC-----CCCeeEEEEEEEEEcCCCCCCCCEEEEEEEeEEEEEEeCC
Confidence 4689999999999999976521 2243444444444443222223345555555555555543
No 148
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=21.33 E-value=3.1e+02 Score=26.61 Aligned_cols=76 Identities=11% Similarity=0.092 Sum_probs=46.2
Q ss_pred CcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccCCCCCeEEEEEEcCCCcceeeecc-cccccc
Q 007890 73 PTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAH-YGMQRE 151 (586)
Q Consensus 73 P~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H-~~~q~~ 151 (586)
-.|.+..|..|++.++-. +. | |+..++. -|+ . .-.-||..-...|.++++|+|+.-|. .-+..-
T Consensus 140 n~lvlP~~~~v~~~~tS~--DV---i--Hsf~ip~----lg~---k-~daiPG~~~~~~~~~~~~G~~~g~Cse~CG~~H 204 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSE--DV---L--HSWAVPS----LGL---K-TDAIPGRLNQTTLMSTRPGLYYGQCSEICGSNH 204 (227)
T ss_pred ceEEecCCCEEEEEEEEC--cc---c--ccccccc----ccc---c-eecCCCceEEEEEecCCcEEEEEECccccCcCc
Confidence 356777777777777766 21 1 4443321 122 2 23458999888999999999999997 111122
Q ss_pred CcceEEEEEECC
Q 007890 152 AGLYGSIRVSLP 163 (586)
Q Consensus 152 ~Gl~G~liV~~~ 163 (586)
.-|-..+.|.++
T Consensus 205 ~~M~~~v~v~~~ 216 (227)
T MTH00098 205 SFMPIVLELVPL 216 (227)
T ss_pred CCceEEEEEeCH
Confidence 335556665543
No 149
>PRK13202 ureB urease subunit beta; Reviewed
Probab=20.54 E-value=3.1e+02 Score=22.98 Aligned_cols=64 Identities=13% Similarity=0.058 Sum_probs=40.2
Q ss_pred EEEEeCC--cEEEEEEeecCCcceEEEEeCCC--------eeEEEecCCccccceEEeEEEEccCceEEEEEEeC
Q 007890 244 VITVIPG--KTYRLRISSLTALSALSFQIEGH--------NMTVVEADGHNVEPFVVQNLFIYSGETYSVLIKAD 308 (586)
Q Consensus 244 ~~~v~~G--~~~rlRliN~g~~~~~~~~i~gh--------~~~via~DG~~~~P~~~~~l~l~pGqR~dVlv~~~ 308 (586)
.+.+.+| ++++|++.|.|.. .+.+.-|=| .|.--++=|..+.=....++..-||+.-+|.+..-
T Consensus 12 ~I~ln~grr~~~~l~V~NtGDR-PIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~ 85 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGDR-PVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVPL 85 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCCC-ceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEEc
Confidence 4778888 4789999999854 444433333 33333334444433345578888999888877654
No 150
>PRK07440 hypothetical protein; Provisional
Probab=20.41 E-value=90 Score=24.07 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=22.0
Q ss_pred eeEEEEECCCCCC----CcEEeecCCEEEEE
Q 007890 60 RKVVITINGRTPG----PTIQARQNDTVIVE 86 (586)
Q Consensus 60 ~~~~~~~Ng~~pg----P~i~v~~Gd~v~i~ 86 (586)
..-+..+||.+-. +...+++||+|+|-
T Consensus 34 ~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv 64 (70)
T PRK07440 34 RLVAVEYNGEILHRQFWEQTQVQPGDRLEIV 64 (70)
T ss_pred CeEEEEECCEEeCHHHcCceecCCCCEEEEE
Confidence 3457788998776 88999999999873
No 151
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.33 E-value=7.9e+02 Score=23.80 Aligned_cols=76 Identities=16% Similarity=0.211 Sum_probs=45.6
Q ss_pred CcEEeecCCEEEEEEEeCCCCCCeeEEecceeeccCCCCCCCCccccccCCCCCeEEEEEEcCCCcceeeecc-cccccc
Q 007890 73 PTIQARQNDTVIVELKNSLLTENVAIHWHGIRQIGTPWADGTEGVTQCPILPGETFTYKFVVDRPGTYLYHAH-YGMQRE 151 (586)
Q Consensus 73 P~i~v~~Gd~v~i~v~N~l~~~~~siH~HGl~~~~~~~~DGv~~~~q~~i~pG~~~~Y~f~~~~~Gt~wYH~H-~~~q~~ 151 (586)
..|.+..|..|++.++-. +. | |+..++. -++ +.-.-||..-...|.++++|+|.=-|. .-+..-
T Consensus 140 n~l~lP~~~~v~~~~tS~--DV---i--Hsf~vp~-------l~~-k~davPG~~~~~~~~~~~~G~y~g~Cse~CG~~H 204 (227)
T MTH00154 140 NRLVLPMNTQIRILITAA--DV---I--HSWTVPS-------LGV-KVDAVPGRLNQLNFLINRPGLFFGQCSEICGANH 204 (227)
T ss_pred ceEEEecCCEEEEEEEcC--ch---h--hheeccc-------cCC-eeecCCCceEEEEEEEcCceEEEEEeechhCcCc
Confidence 467888888888887766 22 2 3332221 011 123458998888999999999988886 111112
Q ss_pred CcceEEEEEECC
Q 007890 152 AGLYGSIRVSLP 163 (586)
Q Consensus 152 ~Gl~G~liV~~~ 163 (586)
.-|...+.|.++
T Consensus 205 ~~M~~~v~vv~~ 216 (227)
T MTH00154 205 SFMPIVIESVSV 216 (227)
T ss_pred cCCeEEEEEeCH
Confidence 335566665543
No 152
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=20.13 E-value=1e+02 Score=23.18 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=19.9
Q ss_pred eEEEEECCCCCC----CcEEeecCCEEEEE
Q 007890 61 KVVITINGRTPG----PTIQARQNDTVIVE 86 (586)
Q Consensus 61 ~~~~~~Ng~~pg----P~i~v~~Gd~v~i~ 86 (586)
+-+..+||.+-. +...+++||+|+|-
T Consensus 31 ~vav~vNg~iv~r~~~~~~~l~~gD~vei~ 60 (66)
T PRK05659 31 RVAVEVNGEIVPRSQHASTALREGDVVEIV 60 (66)
T ss_pred eEEEEECCeEeCHHHcCcccCCCCCEEEEE
Confidence 335678887655 78899999999874
No 153
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.02 E-value=2.7e+02 Score=27.76 Aligned_cols=71 Identities=18% Similarity=0.222 Sum_probs=48.2
Q ss_pred EEEecCCCEEEEEEecCCCCCCCCCCCCCccccCCCeEEEeeecCCCCCCCCCCCCCCCCCCcceeEEeCCCCEEEEEEE
Q 007890 461 VYRLNFNSTVDIILQNANSLSNKTSETHPWHLHGHDFWVLGYGEGKFDIYNDPKKYNLVNPIMKNTVPVHRYGWTALRFR 540 (586)
Q Consensus 461 ~~~~~~g~~ve~~l~N~~~~~~~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~n~~~p~~rDTv~vpp~g~v~irf~ 540 (586)
.+.++.|..+++.+...+-. | .|+|=+.| ..+|.+ ||-.-.+.|.
T Consensus 175 ~lvlP~~~~v~~~ltS~DVi-------H-------Sf~vP~lg------------------vK~Dai---PGr~n~~~~~ 219 (262)
T MTH00027 175 RLILPVDTNVRVLITAADVL-------H-------SWTVPSLA------------------VKMDAV---PGRINETGFL 219 (262)
T ss_pred eEEEeeCcEEEEEEEcCccc-------c-------ceeccccc------------------CcccCC---CCceeeEEEE
Confidence 37899999999999887654 4 55553332 233443 5666678899
Q ss_pred eCCceeeEEeecchhhhhc-CceEEEe
Q 007890 541 ADNPGAWAFHCHIESHFYM-GMGVVFA 566 (586)
Q Consensus 541 adnpG~w~~HCHil~H~d~-GM~~~~~ 566 (586)
++.||.+.-.|+-.-=... .|-..++
T Consensus 220 ~~~~G~y~g~CsE~CG~~Hs~Mpi~v~ 246 (262)
T MTH00027 220 IKRPGIFYGQCSEICGANHSFMPIVVE 246 (262)
T ss_pred cCCcEEEEEEcchhcCcCcCCCeEEEE
Confidence 9999999999996653333 3444443
Done!