Query 007893
Match_columns 586
No_of_seqs 385 out of 1483
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 13:06:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007893.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007893hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ouo_A HUNK1 protein, bromodom 100.0 3.1E-29 1.1E-33 229.6 9.5 109 203-311 18-129 (130)
2 3jvl_A Bromodomain-containing 100.0 3.4E-29 1.1E-33 226.1 6.7 112 201-312 3-117 (120)
3 2oss_A HUNK1 protein, bromodom 100.0 1.9E-28 6.7E-33 223.5 11.2 105 206-310 20-124 (127)
4 3g0l_A Hwalp4, bromodomain adj 99.9 5.7E-28 1.9E-32 217.1 12.4 104 206-311 12-115 (117)
5 3d7c_A General control of amin 99.9 9.6E-28 3.3E-32 214.1 12.0 104 205-310 5-108 (112)
6 2d9e_A Peregrin; four-helix bu 99.9 1.6E-27 5.4E-32 215.7 12.6 108 205-314 5-112 (121)
7 3mb3_A PH-interacting protein; 99.9 1.2E-27 4.2E-32 220.2 11.8 110 204-315 18-128 (135)
8 3p1f_A CREB-binding protein; s 99.9 1.9E-27 6.4E-32 214.4 12.5 109 204-312 8-117 (119)
9 3q2e_A Bromodomain and WD repe 99.9 2.2E-27 7.7E-32 215.2 12.2 108 206-315 9-117 (123)
10 3nxb_A CAT eye syndrome critic 99.9 1E-27 3.5E-32 215.2 9.7 103 204-308 13-115 (116)
11 4alg_A Bromodomain-containing 99.9 1.1E-27 3.8E-32 225.4 10.1 107 206-312 31-137 (154)
12 3fkm_X Signaling protein; brom 99.9 1.9E-27 6.3E-32 226.4 11.8 108 203-310 17-124 (166)
13 1e6i_A Transcriptional activat 99.9 1.7E-27 5.8E-32 215.5 10.5 103 208-312 14-116 (121)
14 3rcw_A Bromodomain-containing 99.9 4.4E-27 1.5E-31 216.5 13.2 114 200-315 6-119 (135)
15 2i7k_A Bromodomain-containing 99.9 5.5E-27 1.9E-31 211.0 12.9 106 203-310 4-109 (117)
16 2dat_A Possible global transcr 99.9 3.1E-27 1.1E-31 214.3 10.3 103 206-310 12-120 (123)
17 2grc_A Probable global transcr 99.9 7.8E-27 2.7E-31 213.4 12.1 108 205-314 9-123 (129)
18 2yyn_A Transcription intermedi 99.9 7.4E-27 2.5E-31 215.1 11.0 105 206-313 19-125 (135)
19 3mb4_A Protein polybromo-1; PB 99.9 5.4E-27 1.8E-31 213.0 9.5 105 205-311 13-123 (124)
20 3hme_A Bromodomain-containing 99.9 1.7E-26 6E-31 209.4 11.3 104 205-310 11-114 (123)
21 3iu5_A Protein polybromo-1; PB 99.9 2.2E-26 7.6E-31 206.5 11.1 103 207-311 5-113 (116)
22 3ljw_A Protein polybromo-1; al 99.9 3.1E-26 1.1E-30 206.8 12.0 106 205-312 6-117 (120)
23 3mqm_A Probable histone-lysine 99.9 3.4E-26 1.2E-30 208.2 11.9 107 206-314 8-120 (126)
24 3k2j_A Protein polybromo-1; PB 99.9 7.7E-26 2.6E-30 207.1 12.2 107 204-312 14-126 (130)
25 3uv4_A Second bromodomain of h 99.9 3.6E-25 1.2E-29 209.0 11.7 106 208-315 30-136 (158)
26 2ri7_A Nucleosome-remodeling f 99.9 2.6E-25 8.9E-30 212.5 8.2 103 206-310 71-173 (174)
27 3dai_A ATPase family AAA domai 99.9 1.7E-24 5.8E-29 198.1 11.8 101 205-307 8-112 (130)
28 3tlp_A Protein polybromo-1; PB 99.9 9.3E-25 3.2E-29 204.4 9.6 104 209-314 26-136 (150)
29 3o36_A Transcription intermedi 99.9 2.9E-24 1E-28 207.3 12.5 103 205-310 79-183 (184)
30 2ro1_A Transcription intermedi 99.9 4.2E-24 1.4E-28 207.3 9.3 101 206-313 75-180 (189)
31 3uv5_A Transcription initiatio 99.9 2.1E-23 7.3E-28 212.2 12.7 108 205-314 12-119 (265)
32 2dkw_A Hypothetical protein KI 99.9 2.2E-23 7.5E-28 191.0 11.3 96 205-307 10-109 (131)
33 3u5n_A E3 ubiquitin-protein li 99.9 2.8E-23 9.6E-28 204.1 10.7 104 206-312 80-203 (207)
34 3uv5_A Transcription initiatio 99.9 1.1E-22 3.7E-27 207.0 12.1 105 208-314 137-242 (265)
35 3aad_A Transcription initiatio 99.9 9.8E-23 3.4E-27 210.1 8.1 106 206-313 46-151 (292)
36 3aad_A Transcription initiatio 99.9 7.3E-22 2.5E-26 203.6 12.0 101 212-314 174-275 (292)
37 2r0y_A Chromatin structure-rem 99.8 1.2E-21 4.2E-26 203.5 10.4 87 221-309 177-263 (311)
38 2r10_A Chromatin structure-rem 99.8 1.5E-21 5.3E-26 206.7 10.0 86 222-309 228-313 (361)
39 2jns_A Bromodomain-containing 99.8 2.9E-21 1E-25 165.9 4.3 75 419-493 11-86 (90)
40 2r10_A Chromatin structure-rem 99.8 3.2E-20 1.1E-24 196.6 7.2 102 204-309 75-179 (361)
41 2r0y_A Chromatin structure-rem 99.8 1E-19 3.5E-24 189.1 7.4 100 206-309 27-129 (311)
42 3iu6_A Protein polybromo-1; PB 99.7 2.4E-16 8.3E-21 146.0 12.8 100 207-312 7-112 (147)
43 3lqh_A Histone-lysine N-methyl 99.5 1.1E-14 3.7E-19 140.3 6.9 96 206-314 74-169 (183)
44 2lm0_A AF4/FMR2 family member 95.1 0.028 9.7E-07 49.9 5.7 64 423-487 56-120 (125)
45 2l2l_A Transcriptional repress 25.9 1.2E+02 0.0041 21.8 4.7 31 101-131 2-35 (43)
No 1
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.96 E-value=3.1e-29 Score=229.58 Aligned_cols=109 Identities=40% Similarity=0.790 Sum_probs=103.3
Q ss_pred CChHHHHHHHHHHHHHHHcCCC---CccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhh
Q 007893 203 KNLGRLFQSCRNLLERLMKHKF---GWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFS 279 (586)
Q Consensus 203 ~~l~~~~k~c~~IL~~L~~~k~---a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~ 279 (586)
..+++.+++|..||..|+.+++ +|+|..|||+..+++||||+||++||||+||++||.+|.|.++.+|.+||+|||.
T Consensus 18 ~~~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~ 97 (130)
T 2ouo_A 18 SKVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFS 97 (130)
T ss_dssp -CHHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 3568899999999999999874 8999999999988899999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 007893 280 NAMLYNPKGQDVHIMAEELSKIFEDTWKKIEA 311 (586)
Q Consensus 280 Na~~YN~~~s~V~~~A~~L~~~Fe~~~~~i~~ 311 (586)
||++||++++.||.+|..|+++|+.+|++++.
T Consensus 98 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 129 (130)
T 2ouo_A 98 NCYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 129 (130)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999998764
No 2
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.95 E-value=3.4e-29 Score=226.10 Aligned_cols=112 Identities=40% Similarity=0.768 Sum_probs=105.8
Q ss_pred ccCChHHHHHHHHHHHHHHHcCCC---CccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 007893 201 SYKNLGRLFQSCRNLLERLMKHKF---GWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRIT 277 (586)
Q Consensus 201 ~~~~l~~~~k~c~~IL~~L~~~k~---a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLI 277 (586)
++..+++++++|..||..|+.++. +|+|..|||+..+++||||++|++||||+||++||++|.|.++.+|.+||+||
T Consensus 3 ~~~~~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li 82 (120)
T 3jvl_A 3 MGSKISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLM 82 (120)
T ss_dssp SSCSSCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 445678899999999999999887 99999999999889999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 007893 278 FSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 312 (586)
Q Consensus 278 f~Na~~YN~~~s~V~~~A~~L~~~Fe~~~~~i~~~ 312 (586)
|.||++||++++.|+.+|..|+++|+..|++++.+
T Consensus 83 ~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~p~~ 117 (120)
T 3jvl_A 83 FSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDE 117 (120)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTCCC-
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCcCC
Confidence 99999999999999999999999999999988654
No 3
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.95 E-value=1.9e-28 Score=223.46 Aligned_cols=105 Identities=42% Similarity=0.744 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 007893 206 GRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYN 285 (586)
Q Consensus 206 ~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN 285 (586)
.++...|..||+.|++|+.+|+|..|||+..+++||||+||++||||+||++||++|.|.++.+|.+||+|||.||++||
T Consensus 20 ~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN 99 (127)
T 2oss_A 20 NQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYN 99 (127)
T ss_dssp HHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 45666778899999999999999999998877799999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q 007893 286 PKGQDVHIMAEELSKIFEDTWKKIE 310 (586)
Q Consensus 286 ~~~s~V~~~A~~L~~~Fe~~~~~i~ 310 (586)
++++.||.+|..|+++|++.|++++
T Consensus 100 ~~~s~i~~~A~~L~~~f~~~~~~lp 124 (127)
T 2oss_A 100 KPGDDIVLMAEALEKLFLQKINELP 124 (127)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999998775
No 4
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.95 E-value=5.7e-28 Score=217.13 Aligned_cols=104 Identities=30% Similarity=0.569 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 007893 206 GRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYN 285 (586)
Q Consensus 206 ~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN 285 (586)
...++.|..||..|+.|+.+|+|..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.||
T Consensus 12 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 89 (117)
T 3g0l_A 12 SKDLALCSMILTEMETHEDAWPFLLPVNLKL--VPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFN 89 (117)
T ss_dssp TTHHHHHHHHHHHHHTSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCchhhcCcCChhh--cCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4578999999999999999999999999876 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 007893 286 PKGQDVHIMAEELSKIFEDTWKKIEA 311 (586)
Q Consensus 286 ~~~s~V~~~A~~L~~~Fe~~~~~i~~ 311 (586)
++++.|+.+|..|+++|++.|+++..
T Consensus 90 ~~~s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 90 EDDSDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999998863
No 5
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.95 E-value=9.6e-28 Score=214.13 Aligned_cols=104 Identities=31% Similarity=0.523 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 007893 205 LGRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLY 284 (586)
Q Consensus 205 l~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~Y 284 (586)
...+...|..||+.|++|+.+|+|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++|
T Consensus 5 ~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 82 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKSHPSAWPFMEPVKKSE--APDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREY 82 (112)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhcCCCCccc--ccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999875 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007893 285 NPKGQDVHIMAEELSKIFEDTWKKIE 310 (586)
Q Consensus 285 N~~~s~V~~~A~~L~~~Fe~~~~~i~ 310 (586)
|++++.++.+|..|++.|++.|+++.
T Consensus 83 N~~~s~~~~~A~~L~~~f~~~~~~~~ 108 (112)
T 3d7c_A 83 NPPDSEYCRCASALEKFFYFKLKEGG 108 (112)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999864
No 6
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.95 E-value=1.6e-27 Score=215.71 Aligned_cols=108 Identities=27% Similarity=0.359 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 007893 205 LGRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLY 284 (586)
Q Consensus 205 l~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~Y 284 (586)
..++...|..||+.|++++.+|+|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++|
T Consensus 5 ~~pl~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 82 (121)
T 2d9e_A 5 SSGFLILLRKTLEQLQEKDTGNIFSEPVPLSE--VPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKY 82 (121)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCccHhhCCcCCccc--cCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999876 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007893 285 NPKGQDVHIMAEELSKIFEDTWKKIEAEYN 314 (586)
Q Consensus 285 N~~~s~V~~~A~~L~~~Fe~~~~~i~~~~~ 314 (586)
|++++.+|.+|..|++.|+..|.++...++
T Consensus 83 N~~~s~~~~~A~~L~~~~~~~l~~~~~~~~ 112 (121)
T 2d9e_A 83 NAKDTIFYRAAVRLREQGGAVLRQARRQAE 112 (121)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987765
No 7
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=220.17 Aligned_cols=110 Identities=31% Similarity=0.552 Sum_probs=105.0
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcc
Q 007893 204 NLGRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAML 283 (586)
Q Consensus 204 ~l~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~ 283 (586)
.+..|.+.|..||..|+.++.+|+|..||+... +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||+.
T Consensus 18 ~~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 95 (135)
T 3mb3_A 18 DIQAWKKQCEELLNLIFQCEDSEPFRQPVDLLE--YPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKA 95 (135)
T ss_dssp CSSTHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCChhhcCCCChhh--CCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999999865 999999999999999999999999999999999999999999999
Q ss_pred cCCC-CCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007893 284 YNPK-GQDVHIMAEELSKIFEDTWKKIEAEYNF 315 (586)
Q Consensus 284 YN~~-~s~V~~~A~~L~~~Fe~~~~~i~~~~~~ 315 (586)
||++ ++.||.+|..|+++|+..|..+..++..
T Consensus 96 yN~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~ 128 (135)
T 3mb3_A 96 YTPSKRSRIYSMSLRLSAFFEEHISSVLSDYKS 128 (135)
T ss_dssp HSCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997 9999999999999999999999888764
No 8
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.95 E-value=1.9e-27 Score=214.35 Aligned_cols=109 Identities=34% Similarity=0.574 Sum_probs=103.5
Q ss_pred ChHHHHHHHHHHHHHHHc-CCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhc
Q 007893 204 NLGRLFQSCRNLLERLMK-HKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAM 282 (586)
Q Consensus 204 ~l~~~~k~c~~IL~~L~~-~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~ 282 (586)
...++.+.|..+|..|++ ++.+|+|..||++..+++||||++|++||||+||++||++|.|.++.+|.+||+|||.||+
T Consensus 8 ~~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 87 (119)
T 3p1f_A 8 KPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAW 87 (119)
T ss_dssp CHHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 457899999999999998 6799999999999866799999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 007893 283 LYNPKGQDVHIMAEELSKIFEDTWKKIEAE 312 (586)
Q Consensus 283 ~YN~~~s~V~~~A~~L~~~Fe~~~~~i~~~ 312 (586)
+||++++.|+.+|..|+++|++.|..+...
T Consensus 88 ~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~ 117 (119)
T 3p1f_A 88 LYNRKTSRVYKFCSKLAEVFEQEIDPVMQS 117 (119)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998754
No 9
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.94 E-value=2.2e-27 Score=215.17 Aligned_cols=108 Identities=34% Similarity=0.636 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 007893 206 GRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYN 285 (586)
Q Consensus 206 ~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN 285 (586)
..|.++|..||..|++++.+|+|..||+... +||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.||
T Consensus 9 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 86 (123)
T 3q2e_A 9 SNWKKQCKELVNLIFQCEDSEPFRQPVDLVE--YPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYT 86 (123)
T ss_dssp -CHHHHHHHHHHHHHTSGGGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4689999999999999999999999999886 99999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007893 286 PK-GQDVHIMAEELSKIFEDTWKKIEAEYNF 315 (586)
Q Consensus 286 ~~-~s~V~~~A~~L~~~Fe~~~~~i~~~~~~ 315 (586)
++ ++.||.+|..|+++|+++|+++..++..
T Consensus 87 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~ 117 (123)
T 3q2e_A 87 PNKRSKIYSMTLRLSALFEEKMKKISSDFKI 117 (123)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 96 9999999999999999999999988753
No 10
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.94 E-value=1e-27 Score=215.15 Aligned_cols=103 Identities=32% Similarity=0.568 Sum_probs=98.0
Q ss_pred ChHHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcc
Q 007893 204 NLGRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAML 283 (586)
Q Consensus 204 ~l~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~ 283 (586)
.+.++++.|..||+.|++++.+|+|..||++.. +||||++|++||||+||++||++|.|.++.+|++||+|||.||+.
T Consensus 13 ~~~~~~~~~~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 90 (116)
T 3nxb_A 13 ELDDDFTAMYKVLDVVKAHKDSWPFLEPVDESY--APNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRK 90 (116)
T ss_dssp --CCHHHHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhCCCcHhhcCcCChhh--ccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 445689999999999999999999999999986 999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHH
Q 007893 284 YNPKGQDVHIMAEELSKIFEDTWKK 308 (586)
Q Consensus 284 YN~~~s~V~~~A~~L~~~Fe~~~~~ 308 (586)
||++++.|+.+|..|+++|++.|.+
T Consensus 91 yN~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 91 YNGESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999874
No 11
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.94 E-value=1.1e-27 Score=225.38 Aligned_cols=107 Identities=39% Similarity=0.680 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 007893 206 GRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYN 285 (586)
Q Consensus 206 ~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN 285 (586)
.++...|..||+.|++++.+|+|..||++..+++||||+||++||||+||++||+++.|.++.+|++||+|||.||++||
T Consensus 31 ~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~YN 110 (154)
T 4alg_A 31 NQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYN 110 (154)
T ss_dssp HHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 55667778899999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 007893 286 PKGQDVHIMAEELSKIFEDTWKKIEAE 312 (586)
Q Consensus 286 ~~~s~V~~~A~~L~~~Fe~~~~~i~~~ 312 (586)
++++.|+.+|..|+++|++.|++++.+
T Consensus 111 ~~~s~i~~~A~~L~~~f~~~~~~l~~~ 137 (154)
T 4alg_A 111 KPTDDIVLMAQTLEKIFLQKVASMPQE 137 (154)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHTTSCSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCch
Confidence 999999999999999999999987643
No 12
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.94 E-value=1.9e-27 Score=226.44 Aligned_cols=108 Identities=31% Similarity=0.526 Sum_probs=99.7
Q ss_pred CChHHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhc
Q 007893 203 KNLGRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAM 282 (586)
Q Consensus 203 ~~l~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~ 282 (586)
....+|.+.|..||..|++++.+|+|..||++..+++||||+||++||||+||++||.++.|.++.+|++||+|||.||+
T Consensus 17 p~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 96 (166)
T 3fkm_X 17 QGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCS 96 (166)
T ss_dssp CTTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 44578999999999999999999999999999877899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007893 283 LYNPKGQDVHIMAEELSKIFEDTWKKIE 310 (586)
Q Consensus 283 ~YN~~~s~V~~~A~~L~~~Fe~~~~~i~ 310 (586)
+||++++.|+.+|..|+++|++.|.++.
T Consensus 97 ~yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 97 LYNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HSSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999875
No 13
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.94 E-value=1.7e-27 Score=215.50 Aligned_cols=103 Identities=33% Similarity=0.577 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCC
Q 007893 208 LFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPK 287 (586)
Q Consensus 208 ~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~ 287 (586)
+++.|..||..|+.|+.+|+|..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||++
T Consensus 14 ~~~~~~~il~~l~~~~~a~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 91 (121)
T 1e6i_A 14 HDAAIQNILTELQNHAAAWPFLQPVNKEE--VPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGE 91 (121)
T ss_dssp THHHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHcCCCchhhCCCCChhh--CcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 47899999999999999999999999875 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHh
Q 007893 288 GQDVHIMAEELSKIFEDTWKKIEAE 312 (586)
Q Consensus 288 ~s~V~~~A~~L~~~Fe~~~~~i~~~ 312 (586)
++.|+.+|..|++.|+++|+.++..
T Consensus 92 ~s~i~~~A~~L~~~f~~~~~~~p~~ 116 (121)
T 1e6i_A 92 NTSYYKYANRLEKFFNNKVKEIPEY 116 (121)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTSGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccc
Confidence 9999999999999999999998543
No 14
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.94 E-value=4.4e-27 Score=216.47 Aligned_cols=114 Identities=29% Similarity=0.394 Sum_probs=106.3
Q ss_pred cccCChHHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhh
Q 007893 200 VSYKNLGRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFS 279 (586)
Q Consensus 200 ~~~~~l~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~ 279 (586)
.+...++++...|..||+.|++|+.+|+|..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.
T Consensus 6 ~~~~~~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~ 83 (135)
T 3rcw_A 6 AMELRLTPLTVLLRSVLDQLQDKDPARIFAQPVSLKE--VPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIID 83 (135)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHTCTTCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHHHhCCcchhhcCCCChhh--cCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 3455678899999999999999999999999999886 99999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007893 280 NAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAEYNF 315 (586)
Q Consensus 280 Na~~YN~~~s~V~~~A~~L~~~Fe~~~~~i~~~~~~ 315 (586)
||++||++++.+|.+|..|++.|+..|..+...++.
T Consensus 84 Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~~~~~~~ 119 (135)
T 3rcw_A 84 NCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDS 119 (135)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999877653
No 15
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.94 E-value=5.5e-27 Score=211.02 Aligned_cols=106 Identities=25% Similarity=0.317 Sum_probs=101.1
Q ss_pred CChHHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhc
Q 007893 203 KNLGRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAM 282 (586)
Q Consensus 203 ~~l~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~ 282 (586)
..++++.+.|..||+.|++++.+++|..||+... +||||+||++||||+||++||.+|.|.++.+|.+||+|||.||+
T Consensus 4 ~~~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~~--~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~ 81 (117)
T 2i7k_A 4 VEQTPLQEALNQLMRQLQRKDPSAFFSFPVTDFI--APGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAM 81 (117)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSGGGTSSSCCCTTT--SSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCcccHHhcCCCCccc--cCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 3568899999999999999999999999999765 99999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007893 283 LYNPKGQDVHIMAEELSKIFEDTWKKIE 310 (586)
Q Consensus 283 ~YN~~~s~V~~~A~~L~~~Fe~~~~~i~ 310 (586)
+||++++.|+.+|..|++.|++.|....
T Consensus 82 ~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 109 (117)
T 2i7k_A 82 IYNKPETIYYKAAKKLLHSGMKILSQER 109 (117)
T ss_dssp HTSCSSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764
No 16
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=3.1e-27 Score=214.27 Aligned_cols=103 Identities=21% Similarity=0.410 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHcCC------CCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhh
Q 007893 206 GRLFQSCRNLLERLMKHK------FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFS 279 (586)
Q Consensus 206 ~~~~k~c~~IL~~L~~~k------~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~ 279 (586)
..+.+.|..||+.|++++ .+|+|..||+... +||||++|++||||+||++||+++.|.++.+|.+||+|||.
T Consensus 12 ~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 89 (123)
T 2dat_A 12 PKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCH 89 (123)
T ss_dssp HHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTT--SCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 678999999999999987 5899999999765 99999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007893 280 NAMLYNPKGQDVHIMAEELSKIFEDTWKKIE 310 (586)
Q Consensus 280 Na~~YN~~~s~V~~~A~~L~~~Fe~~~~~i~ 310 (586)
||++||++++.||.+|..|+++|+..|++++
T Consensus 90 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~p 120 (123)
T 2dat_A 90 NAQTFNLEGSQIYEDSIVLQSVFKSARQSGP 120 (123)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999998764
No 17
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.94 E-value=7.8e-27 Score=213.37 Aligned_cols=108 Identities=25% Similarity=0.431 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHHHHHHcCC-------CCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 007893 205 LGRLFQSCRNLLERLMKHK-------FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRIT 277 (586)
Q Consensus 205 l~~~~k~c~~IL~~L~~~k-------~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLI 277 (586)
-..+.+.|..||+.|++++ .+|+|..||+... +||||+||++||||+||++||.+|.|.++.+|.+||+||
T Consensus 9 ~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li 86 (129)
T 2grc_A 9 PPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLL 86 (129)
T ss_dssp CHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 4678999999999999876 4899999999765 999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007893 278 FSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAEYN 314 (586)
Q Consensus 278 f~Na~~YN~~~s~V~~~A~~L~~~Fe~~~~~i~~~~~ 314 (586)
|.||++||++++.||.+|..|+++|+..|+++...-+
T Consensus 87 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~~~ 123 (129)
T 2grc_A 87 CQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDD 123 (129)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCCc
Confidence 9999999999999999999999999999999987543
No 18
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.94 E-value=7.4e-27 Score=215.13 Aligned_cols=105 Identities=34% Similarity=0.592 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhC--CCCCCHHHHHHHHHHhhhhhcc
Q 007893 206 GRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSK--NLYKTPREFAEDVRITFSNAML 283 (586)
Q Consensus 206 ~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~--~~Y~s~~eF~~DvrLIf~Na~~ 283 (586)
...++.|..||..|++|+.+|+|..||+. .+||||+||++||||+||++||++ +.|.++.+|.+||+|||.||++
T Consensus 19 p~~~~~c~~il~~L~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~ 95 (135)
T 2yyn_A 19 PIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAE 95 (135)
T ss_dssp HHHHHHHHHHHHHHHTSGGGGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccchhhcCCCcc---cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHH
Confidence 44689999999999999999999999987 389999999999999999999998 5999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 007893 284 YNPKGQDVHIMAEELSKIFEDTWKKIEAEY 313 (586)
Q Consensus 284 YN~~~s~V~~~A~~L~~~Fe~~~~~i~~~~ 313 (586)
||++++.||.+|..|+++|+..|+++..+.
T Consensus 96 yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 125 (135)
T 2yyn_A 96 FNEPDSEVANAGIKLENYFEELLKNLYPEK 125 (135)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999986543
No 19
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.94 E-value=5.4e-27 Score=212.98 Aligned_cols=105 Identities=25% Similarity=0.396 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHHHHc------CCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 007893 205 LGRLFQSCRNLLERLMK------HKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITF 278 (586)
Q Consensus 205 l~~~~k~c~~IL~~L~~------~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf 278 (586)
.+++.+.|..||+.|++ |+.+++|..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||
T Consensus 13 ~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~ 90 (124)
T 3mb4_A 13 MTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSE--LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMF 90 (124)
T ss_dssp CCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccc--cCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 35789999999999998 455799999999876 9999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 007893 279 SNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEA 311 (586)
Q Consensus 279 ~Na~~YN~~~s~V~~~A~~L~~~Fe~~~~~i~~ 311 (586)
.||++||++++.||.+|..|+++|++.|+++..
T Consensus 91 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 123 (124)
T 3mb4_A 91 NNACTYNEPESLIYKDALVLHKVLLETRRDLEG 123 (124)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998753
No 20
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.93 E-value=1.7e-26 Score=209.40 Aligned_cols=104 Identities=29% Similarity=0.345 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 007893 205 LGRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLY 284 (586)
Q Consensus 205 l~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~Y 284 (586)
.+++.+.|..||+.|++++.+++|..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.|
T Consensus 11 ~~p~~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 88 (123)
T 3hme_A 11 STPIQQLLEHFLRQLQRKDPHGFFAFPVTDAI--APGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTY 88 (123)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCSSSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCccHhhcCCCChhh--ccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999876 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007893 285 NPKGQDVHIMAEELSKIFEDTWKKIE 310 (586)
Q Consensus 285 N~~~s~V~~~A~~L~~~Fe~~~~~i~ 310 (586)
|++++.||.+|..|.+.|++.|.+..
T Consensus 89 N~~~s~~~~~A~~L~~~~~~~~~~~~ 114 (123)
T 3hme_A 89 NRPDTVYYKLAKKILHAGFKMMSKER 114 (123)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHTCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998654
No 21
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.93 E-value=2.2e-26 Score=206.52 Aligned_cols=103 Identities=19% Similarity=0.332 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHcCC------CCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhh
Q 007893 207 RLFQSCRNLLERLMKHK------FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSN 280 (586)
Q Consensus 207 ~~~k~c~~IL~~L~~~k------~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~N 280 (586)
..+++|..||+.|++++ .+|+|..||+... +||||++|++||||+||++||++|.|.++.+|.+||+|||.|
T Consensus 5 ~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 82 (116)
T 3iu5_A 5 DPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRN--QPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNN 82 (116)
T ss_dssp CHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGG--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCccc--CCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 36899999999999885 4999999999776 999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 007893 281 AMLYNPKGQDVHIMAEELSKIFEDTWKKIEA 311 (586)
Q Consensus 281 a~~YN~~~s~V~~~A~~L~~~Fe~~~~~i~~ 311 (586)
|++||++++.||.+|..|+++|+..|+++..
T Consensus 83 a~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 83 AKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999864
No 22
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.93 E-value=3.1e-26 Score=206.83 Aligned_cols=106 Identities=31% Similarity=0.412 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHHHHHHcCCC------CccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhh
Q 007893 205 LGRLFQSCRNLLERLMKHKF------GWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITF 278 (586)
Q Consensus 205 l~~~~k~c~~IL~~L~~~k~------a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf 278 (586)
...+...|..||+.|+.+++ +++|..||+... +||||++|++||||+||++||.+|.|.++.+|.+||+|||
T Consensus 6 p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 83 (120)
T 3ljw_A 6 PAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQ--YPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLA 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence 46688899999999998877 999999999876 9999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 007893 279 SNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 312 (586)
Q Consensus 279 ~Na~~YN~~~s~V~~~A~~L~~~Fe~~~~~i~~~ 312 (586)
.||+.||++++.||.+|..|+++|++.|++++..
T Consensus 84 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~~ 117 (120)
T 3ljw_A 84 KNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHH 117 (120)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999864
No 23
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.93 E-value=3.4e-26 Score=208.18 Aligned_cols=107 Identities=24% Similarity=0.298 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHcCCC------CccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhh
Q 007893 206 GRLFQSCRNLLERLMKHKF------GWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFS 279 (586)
Q Consensus 206 ~~~~k~c~~IL~~L~~~k~------a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~ 279 (586)
..+.+.|..|++.|+++++ +|+|..||+... +||||++|++||||+||++||.+|.|.++.+|.+||+|||.
T Consensus 8 ~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 85 (126)
T 3mqm_A 8 ARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKK--NADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFR 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGG--CTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 5678899999999998764 999999999886 99999999999999999999999999999999999999999
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007893 280 NAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAEYN 314 (586)
Q Consensus 280 Na~~YN~~~s~V~~~A~~L~~~Fe~~~~~i~~~~~ 314 (586)
||+.||++++.||.+|..|+++|+..|.++...+.
T Consensus 86 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~l~ 120 (126)
T 3mqm_A 86 NAEKYYGRKSPVGRDVCRLRKAYYNARHEASAQID 120 (126)
T ss_dssp HHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988765
No 24
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.93 E-value=7.7e-26 Score=207.13 Aligned_cols=107 Identities=21% Similarity=0.324 Sum_probs=100.4
Q ss_pred ChHHHHHHHHHHHHHHHcCCC------CccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 007893 204 NLGRLFQSCRNLLERLMKHKF------GWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRIT 277 (586)
Q Consensus 204 ~l~~~~k~c~~IL~~L~~~k~------a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLI 277 (586)
+..++..+|..|++.|..... +|+|..||+... +||||++|++||||+||++||+++.|.++.+|.+||+||
T Consensus 14 ~~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~--~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Li 91 (130)
T 3k2j_A 14 GTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKK--YPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLM 91 (130)
T ss_dssp HHHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhh--CccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 346789999999999998764 999999999865 999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 007893 278 FSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 312 (586)
Q Consensus 278 f~Na~~YN~~~s~V~~~A~~L~~~Fe~~~~~i~~~ 312 (586)
|.||++||++++.|+.+|..|+++|++.|+++...
T Consensus 92 f~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 92 FENAKRYNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998764
No 25
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.92 E-value=3.6e-25 Score=209.05 Aligned_cols=106 Identities=26% Similarity=0.485 Sum_probs=95.1
Q ss_pred HHHHHHHHHHH-HHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCC
Q 007893 208 LFQSCRNLLER-LMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNP 286 (586)
Q Consensus 208 ~~k~c~~IL~~-L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~ 286 (586)
+...+..|+.. |+.++.+|+|..||++.. +||||+||++||||+||++||.+|.|.++.+|++||+|||.||++||+
T Consensus 30 l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~yN~ 107 (158)
T 3uv4_A 30 FSFILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNG 107 (158)
T ss_dssp HHHHHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCchhhcCcCChhh--cccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 44444444443 566889999999999876 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007893 287 KGQDVHIMAEELSKIFEDTWKKIEAEYNF 315 (586)
Q Consensus 287 ~~s~V~~~A~~L~~~Fe~~~~~i~~~~~~ 315 (586)
+++.|+.+|..|..+|+..|.++...+..
T Consensus 108 ~~s~i~~~A~~L~~~~~~~l~e~~~~l~~ 136 (158)
T 3uv4_A 108 PESQYTKTAQEIVNVCYQTLTEYDEHLTQ 136 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999877653
No 26
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.91 E-value=2.6e-25 Score=212.52 Aligned_cols=103 Identities=33% Similarity=0.606 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 007893 206 GRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYN 285 (586)
Q Consensus 206 ~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN 285 (586)
...++.|..||..|+.++.+|+|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||++||
T Consensus 71 ~~~~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 148 (174)
T 2ri7_A 71 EKDYEGLKRVLRSLQAHKMAWPFLEPVDPND--APDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYN 148 (174)
T ss_dssp HHHHHHHHHHHHHHHTSGGGTTTSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcCCCccc--CCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4578899999999999999999999999875 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q 007893 286 PKGQDVHIMAEELSKIFEDTWKKIE 310 (586)
Q Consensus 286 ~~~s~V~~~A~~L~~~Fe~~~~~i~ 310 (586)
++++.|+.+|..|+++|+++|++++
T Consensus 149 ~~~s~~~~~A~~L~~~f~~~~~~~~ 173 (174)
T 2ri7_A 149 PSDSPFYQCAEVLESFFVQKLKGFK 173 (174)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999987653
No 27
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.91 E-value=1.7e-24 Score=198.10 Aligned_cols=101 Identities=34% Similarity=0.435 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 007893 205 LGRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLY 284 (586)
Q Consensus 205 l~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~Y 284 (586)
+.++...|..+|..|+.++.+|+|..||++.. +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++|
T Consensus 8 l~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 85 (130)
T 3dai_A 8 FRELRIFLRNVTHRLAIDKRFRVFTKPVDPDE--VPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEY 85 (130)
T ss_dssp HHHHHHHHHHHHHHHHTSGGGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999986 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHH----HHHHHHHHHHHHHHHH
Q 007893 285 NPKGQDV----HIMAEELSKIFEDTWK 307 (586)
Q Consensus 285 N~~~s~V----~~~A~~L~~~Fe~~~~ 307 (586)
|++++++ +.+|..|++.|...+.
T Consensus 86 N~~~s~~~~~i~~~A~~L~~~~~~~i~ 112 (130)
T 3dai_A 86 NPDRDPGDRLIRHRACALRDTAYAIIK 112 (130)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 9999876 6888888888888876
No 28
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.91 E-value=9.3e-25 Score=204.39 Aligned_cols=104 Identities=26% Similarity=0.386 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHcCCC-------CccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhh
Q 007893 209 FQSCRNLLERLMKHKF-------GWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNA 281 (586)
Q Consensus 209 ~k~c~~IL~~L~~~k~-------a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na 281 (586)
..+|..||..|++... +++|..||+... +||||+||++||||+||++||++|.|.++.+|++||+|||.||
T Consensus 26 ~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 103 (150)
T 3tlp_A 26 KQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKD--YPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNA 103 (150)
T ss_dssp HHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhh--CcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 5678888888877654 899999999876 9999999999999999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007893 282 MLYNPKGQDVHIMAEELSKIFEDTWKKIEAEYN 314 (586)
Q Consensus 282 ~~YN~~~s~V~~~A~~L~~~Fe~~~~~i~~~~~ 314 (586)
++||++++.||.+|..|+++|++.|+++....+
T Consensus 104 ~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~pd 136 (150)
T 3tlp_A 104 RHYNEEGSQVYNDAHILEKLLKEKRKELGPLPD 136 (150)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHCCC--
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999999999875544
No 29
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.91 E-value=2.9e-24 Score=207.28 Aligned_cols=103 Identities=34% Similarity=0.598 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhC--CCCCCHHHHHHHHHHhhhhhc
Q 007893 205 LGRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSK--NLYKTPREFAEDVRITFSNAM 282 (586)
Q Consensus 205 l~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~--~~Y~s~~eF~~DvrLIf~Na~ 282 (586)
...+.+.|..||..|+.++.+|+|..||+.. +||||+||++||||+||++||++ +.|.++.+|++||+|||.||+
T Consensus 79 ~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~~---~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~ 155 (184)
T 3o36_A 79 TPIDKRKCERLLLFLYCHEMSLAFQDPVPLT---VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCA 155 (184)
T ss_dssp CHHHHHHHHHHHHHHHHSTTCHHHHSCCCTT---STTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhchhhhhhccccccC---CCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 3667899999999999999999999999853 89999999999999999999998 799999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 007893 283 LYNPKGQDVHIMAEELSKIFEDTWKKIE 310 (586)
Q Consensus 283 ~YN~~~s~V~~~A~~L~~~Fe~~~~~i~ 310 (586)
+||++++.|+.+|..|+++|++.|+++.
T Consensus 156 ~yN~~~s~v~~~a~~L~~~f~~~~~~~~ 183 (184)
T 3o36_A 156 EFNEPDSEVANAGIKLENYFEELLKNLY 183 (184)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999873
No 30
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.90 E-value=4.2e-24 Score=207.30 Aligned_cols=101 Identities=20% Similarity=0.290 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcC--CCCCHHHHHHHHhCC---CCCCHHHHHHHHHHhhhh
Q 007893 206 GRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIK--HPMDLGTVKARLSKN---LYKTPREFAEDVRITFSN 280 (586)
Q Consensus 206 ~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK--~PMDL~TIk~KL~~~---~Y~s~~eF~~DvrLIf~N 280 (586)
...+++|..||..|+.|+.+|+|..||+ |+||+||+ +||||+||++||+++ .|.++++|++||+|||+|
T Consensus 75 ~~~~~~c~~iL~~l~~~~~s~pF~~pV~------~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N 148 (189)
T 2ro1_A 75 PANQRKCERVLLALFCHEPCRPLHQLAT------DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQ 148 (189)
T ss_dssp HHHHHHHHHHHHHHHHSTTHHHHHSCSC------CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccchhhcCCCC------hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHH
Confidence 4567899999999999999999999997 67999998 899999999999999 999999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 007893 281 AMLYNPKGQDVHIMAEELSKIFEDTWKKIEAEY 313 (586)
Q Consensus 281 a~~YN~~~s~V~~~A~~L~~~Fe~~~~~i~~~~ 313 (586)
|++|| +++.|+.+|..|+++|+++|+++..+.
T Consensus 149 ~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~~ 180 (189)
T 2ro1_A 149 FNKLT-EDKADVQSIIGLQRFFETRMNEAFGDT 180 (189)
T ss_dssp HHHHC-CSSCSSHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHC-CCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 99999 588999999999999999999987653
No 31
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.89 E-value=2.1e-23 Score=212.23 Aligned_cols=108 Identities=25% Similarity=0.473 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 007893 205 LGRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLY 284 (586)
Q Consensus 205 l~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~Y 284 (586)
...+...|..||..|+.++.+|+|..||++.. +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++|
T Consensus 12 ~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 89 (265)
T 3uv5_A 12 MVTLSSILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 89 (265)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhhCCCChhh--cCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhc
Confidence 35789999999999999999999999999987 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007893 285 NPKGQDVHIMAEELSKIFEDTWKKIEAEYN 314 (586)
Q Consensus 285 N~~~s~V~~~A~~L~~~Fe~~~~~i~~~~~ 314 (586)
|++++.|+.+|..|.++|+..|+++...+.
T Consensus 90 N~~~s~i~~~A~~l~~~~~~~~~~~~~~~~ 119 (265)
T 3uv5_A 90 NGPKHSLTQISQSMLDLCDEKLKEKEDKLA 119 (265)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999877654
No 32
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=2.2e-23 Score=191.05 Aligned_cols=96 Identities=33% Similarity=0.491 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhccc
Q 007893 205 LGRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLY 284 (586)
Q Consensus 205 l~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~Y 284 (586)
+.++...|..||+.|+.++.+|+|..| +||||+||++||||+||++||.+|.|.++.+|.+||+|||.||++|
T Consensus 10 ~~~L~~~~~~il~~l~~~~~~~~F~~P-------~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~y 82 (131)
T 2dkw_A 10 LRELRLFLRDVTKRLATDKRFNIFSKP-------VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEY 82 (131)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCTTSSC-------CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhCccchhhcCc-------CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999998 7999999999999999999999999999999999999999999999
Q ss_pred CCCCCH----HHHHHHHHHHHHHHHHH
Q 007893 285 NPKGQD----VHIMAEELSKIFEDTWK 307 (586)
Q Consensus 285 N~~~s~----V~~~A~~L~~~Fe~~~~ 307 (586)
|+++++ |+.+|..|++.|...++
T Consensus 83 N~~~s~~~~~i~~~A~~L~~~~~~~l~ 109 (131)
T 2dkw_A 83 NPDKDPGDKIIRHRACTLKDTAHAIIA 109 (131)
T ss_dssp CCCSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 999986 57899999999998875
No 33
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.89 E-value=2.8e-23 Score=204.08 Aligned_cols=104 Identities=35% Similarity=0.597 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhC---CCCCCHHHHHHHHHHhhhhhc
Q 007893 206 GRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSK---NLYKTPREFAEDVRITFSNAM 282 (586)
Q Consensus 206 ~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~---~~Y~s~~eF~~DvrLIf~Na~ 282 (586)
..+.++|..||..|+.++.+|+|..||+. ++||||+||++||||+||++||++ |.|.++.+|++||+|||.||+
T Consensus 80 ~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~ 156 (207)
T 3u5n_A 80 PVDQRKCERLLLYLYCHELSIEFQEPVPA---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCE 156 (207)
T ss_dssp HHHHHHHHHHHHHHHTSTTCGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhhhhccCCh---hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHHH
Confidence 55788999999999999999999999986 389999999999999999999997 799999999999999999999
Q ss_pred ccCC-----------------CCCHHHHHHHHHHHHHHHHHHHHHHh
Q 007893 283 LYNP-----------------KGQDVHIMAEELSKIFEDTWKKIEAE 312 (586)
Q Consensus 283 ~YN~-----------------~~s~V~~~A~~L~~~Fe~~~~~i~~~ 312 (586)
+||+ +++.|+.+|..|+.+|+.+|+++..+
T Consensus 157 ~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~ 203 (207)
T 3u5n_A 157 RFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSD 203 (207)
T ss_dssp HHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999 99999999999999999999998654
No 34
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.88 E-value=1.1e-22 Score=207.01 Aligned_cols=105 Identities=27% Similarity=0.501 Sum_probs=95.7
Q ss_pred HHHHHHHHHH-HHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCC
Q 007893 208 LFQSCRNLLE-RLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNP 286 (586)
Q Consensus 208 ~~k~c~~IL~-~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~ 286 (586)
+...|..|+. .|+.++.+|+|..||+... +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||+
T Consensus 137 ~~~il~~i~~~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~ 214 (265)
T 3uv5_A 137 FSFILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNG 214 (265)
T ss_dssp HHHHHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhhhhHHHhCCCChhH--hCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 3444555554 3778899999999999886 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007893 287 KGQDVHIMAEELSKIFEDTWKKIEAEYN 314 (586)
Q Consensus 287 ~~s~V~~~A~~L~~~Fe~~~~~i~~~~~ 314 (586)
+++.||.+|..|..+|+..|.++...+.
T Consensus 215 ~~s~~~~~A~~l~~~~~~~~~~~~~~~~ 242 (265)
T 3uv5_A 215 PESQYTKTAQEIVNVCYQTLTEYDEHLT 242 (265)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887664
No 35
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.87 E-value=9.8e-23 Score=210.11 Aligned_cols=106 Identities=25% Similarity=0.474 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 007893 206 GRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYN 285 (586)
Q Consensus 206 ~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN 285 (586)
..+...|..||..|+.++.+|+|..||+... +||||+||++||||+||++||++|.|.++.+|.+||+|||.||++||
T Consensus 46 ~~l~~~~~~il~~l~~~~~a~~F~~pV~~~~--~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 123 (292)
T 3aad_A 46 VTLSSILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN 123 (292)
T ss_dssp HHHHHHHHHHHHHHSSSTTCGGGSSSCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCcchhhcCCCCchh--cccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHc
Confidence 4567899999999999999999999999886 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 007893 286 PKGQDVHIMAEELSKIFEDTWKKIEAEY 313 (586)
Q Consensus 286 ~~~s~V~~~A~~L~~~Fe~~~~~i~~~~ 313 (586)
++++.|+.+|..|.++|+..|+.+...+
T Consensus 124 ~~~s~i~~~A~~L~~~~~~~~~~~~~~~ 151 (292)
T 3aad_A 124 GPKHSLTQISQSMLDLCDEKLKEKEDKL 151 (292)
T ss_dssp CSSSHHHHHHTHHHHTTTTTGGGSHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhhhcchhhh
Confidence 9999999999999999999998876554
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.86 E-value=7.3e-22 Score=203.61 Aligned_cols=101 Identities=28% Similarity=0.544 Sum_probs=92.8
Q ss_pred HHHHH-HHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCH
Q 007893 212 CRNLL-ERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQD 290 (586)
Q Consensus 212 c~~IL-~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~~s~ 290 (586)
|..++ ..|+.++.+|+|..||+... +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||++||++++.
T Consensus 174 l~~i~~~~l~~~~~s~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~ 251 (292)
T 3aad_A 174 LDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQ 251 (292)
T ss_dssp HHHHHHHTGGGSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHhhhhhhcCcchhHHHhcccccc--cccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 44444 34778999999999999875 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 007893 291 VHIMAEELSKIFEDTWKKIEAEYN 314 (586)
Q Consensus 291 V~~~A~~L~~~Fe~~~~~i~~~~~ 314 (586)
||.+|..|+++|+..|..+...+.
T Consensus 252 i~~~A~~L~~~~~~~~~~~~~~l~ 275 (292)
T 3aad_A 252 YTKTAQEIVNVCYQTLTEYDEHLT 275 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999877654
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.85 E-value=1.2e-21 Score=203.45 Aligned_cols=87 Identities=30% Similarity=0.406 Sum_probs=83.7
Q ss_pred cCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHH
Q 007893 221 KHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSK 300 (586)
Q Consensus 221 ~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~~s~V~~~A~~L~~ 300 (586)
.|+.+|+|..||+... +||||+||++||||+||++||++|.|.++.+|.+||+|||.||++||++++.||.+|..|++
T Consensus 177 ~~~~s~~F~~pvd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~ 254 (311)
T 2r0y_A 177 KVKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTN 254 (311)
T ss_dssp SSCTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred CCccHHHHhCCCChhh--cccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 3668999999999876 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 007893 301 IFEDTWKKI 309 (586)
Q Consensus 301 ~Fe~~~~~i 309 (586)
+|+..|++.
T Consensus 255 ~f~~~~~~~ 263 (311)
T 2r0y_A 255 YFNYLIQKE 263 (311)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999983
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.84 E-value=1.5e-21 Score=206.68 Aligned_cols=86 Identities=29% Similarity=0.398 Sum_probs=83.3
Q ss_pred CCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHHH
Q 007893 222 HKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKI 301 (586)
Q Consensus 222 ~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~~s~V~~~A~~L~~~ 301 (586)
|+.+|+|..|||... +||||+||++||||+||++||++|.|.++.+|.+||+|||.||++||++++.||.+|..|+++
T Consensus 228 ~~~s~~F~~pvd~~~--~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 305 (361)
T 2r10_A 228 VKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 305 (361)
T ss_dssp SCTTGGGSSCCCTTT--CTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CcchhcccCCCChhh--cccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 578999999999876 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 007893 302 FEDTWKKI 309 (586)
Q Consensus 302 Fe~~~~~i 309 (586)
|+..|+++
T Consensus 306 f~~~~~~~ 313 (361)
T 2r10_A 306 FNYLIQKE 313 (361)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999984
No 39
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.82 E-value=2.9e-21 Score=165.89 Aligned_cols=75 Identities=43% Similarity=0.746 Sum_probs=69.8
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhhCCCCCC-CCCcEEEeCCCCCHHHHHHHHHHHHHHHHhh
Q 007893 419 NNPDKRDMTYEEKQRLSMNLQELPSDKLDHVVQIIKKRNPVLSQ-QDDEIEVDIDTFDPETLWELDRFVTNYNKIL 493 (586)
Q Consensus 419 ~~~~~rpMT~eEK~~Ls~~I~~Lp~ekL~~VV~IIq~~~p~l~~-~~dEIEIDId~L~~~TLreL~ryV~~~kK~~ 493 (586)
.++.+++|||+||++|+.+|+.||+++|.+||+||++++|.+.+ +++|||||||+|++.|||+|++||.+|++.+
T Consensus 11 ~e~~~~~mT~eEK~~Ls~~I~~Lp~e~L~~Vi~II~~~~p~l~~~~~dEIEiDid~L~~~TL~~L~~yV~~~l~~k 86 (90)
T 2jns_A 11 EEDKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLRELERYVTSCLRKK 86 (90)
T ss_dssp TTSSCCCCCHHHHHHHHHHHTTSCHHHHTTHHHHHHTTCGGGTTSCTTSCCCCTTTSCHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCccccCCCCCeEEEeccCCCHHHHHHHHHHHHHHHHhh
Confidence 34578999999999999999999999999999999999999875 7899999999999999999999999997764
No 40
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.80 E-value=3.2e-20 Score=196.62 Aligned_cols=102 Identities=22% Similarity=0.213 Sum_probs=91.5
Q ss_pred ChHHHHHHHHHHHHHHHcCC--CCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCC-CHHHHHHHHHHhhhh
Q 007893 204 NLGRLFQSCRNLLERLMKHK--FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYK-TPREFAEDVRITFSN 280 (586)
Q Consensus 204 ~l~~~~k~c~~IL~~L~~~k--~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~-s~~eF~~DvrLIf~N 280 (586)
.+..+...|..+|+.|.+.. .+++|..||+... +||||+||++||||+||++|| +.|. ++.+|++||+|||.|
T Consensus 75 ~~~~~~~~~~~~l~~l~~~~~~~~~~F~~p~~~~~--~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~N 150 (361)
T 2r10_A 75 HIPKFNRFISFTLDVLIDKYKDIFKDFIKLPSRKF--HPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKN 150 (361)
T ss_dssp CCTTHHHHHHHHHHHHHHHTHHHHGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCcccHHhcCCCCccc--CCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHH
Confidence 34556778999999987644 5899999999876 999999999999999999998 5555 899999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 007893 281 AMLYNPKGQDVHIMAEELSKIFEDTWKKI 309 (586)
Q Consensus 281 a~~YN~~~s~V~~~A~~L~~~Fe~~~~~i 309 (586)
|++||++++.||.+|..|+++|+..|.+.
T Consensus 151 a~~yN~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 151 CQAYNEYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp HHHHBCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999875
No 41
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.78 E-value=1e-19 Score=189.06 Aligned_cols=100 Identities=22% Similarity=0.203 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHcCC--CCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCC-CHHHHHHHHHHhhhhhc
Q 007893 206 GRLFQSCRNLLERLMKHK--FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYK-TPREFAEDVRITFSNAM 282 (586)
Q Consensus 206 ~~~~k~c~~IL~~L~~~k--~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~-s~~eF~~DvrLIf~Na~ 282 (586)
..+...|..+|..+...- .+++|..||+... +||||+||++||||+||++|| +.|. ++.+|++||+|||.||+
T Consensus 27 p~~~~~~~~~L~~~~~~~r~~~~~F~~p~~~~~--~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~ 102 (311)
T 2r0y_A 27 PKFNRFISFTLDVLIDKYKDIFKDFIKLPSRKF--HPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQ 102 (311)
T ss_dssp TTHHHHHHHHHHHHHHHSHHHHGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCchhHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHH
Confidence 345667777777776533 5899999999876 999999999999999999999 5565 89999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 007893 283 LYNPKGQDVHIMAEELSKIFEDTWKKI 309 (586)
Q Consensus 283 ~YN~~~s~V~~~A~~L~~~Fe~~~~~i 309 (586)
+||++++.||.+|..|+++|+..|.+.
T Consensus 103 ~yN~~~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 103 AYNEYDSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HccCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999876
No 42
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.68 E-value=2.4e-16 Score=145.98 Aligned_cols=100 Identities=17% Similarity=0.226 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHcCCC------CccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhh
Q 007893 207 RLFQSCRNLLERLMKHKF------GWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSN 280 (586)
Q Consensus 207 ~~~k~c~~IL~~L~~~k~------a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~N 280 (586)
.+...+..|+..++.+++ +.+|...++.. |+||. ++||+|.+|++||..|.|.++.+|..||.|||.|
T Consensus 7 ~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~----pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~N 80 (147)
T 3iu6_A 7 LIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD----PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLER 80 (147)
T ss_dssp HHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC----TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC----ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 456778899999998874 67899887765 78998 9999999999999999999999999999999999
Q ss_pred hcccCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 007893 281 AMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 312 (586)
Q Consensus 281 a~~YN~~~s~V~~~A~~L~~~Fe~~~~~i~~~ 312 (586)
|.+||.+||.||.+|..|+.+|...+.++...
T Consensus 81 Ar~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 81 ARRMNRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999998765
No 43
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.51 E-value=1.1e-14 Score=140.35 Aligned_cols=96 Identities=16% Similarity=0.242 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccC
Q 007893 206 GRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYN 285 (586)
Q Consensus 206 ~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN 285 (586)
.++...+..||..|..++.+|+|+.. .++.||||.||++||+.|.|.++.+|.+||+|||.||+.||
T Consensus 74 ~el~~~l~~vl~~L~~~~~s~~~~~y-------------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~ 140 (183)
T 3lqh_A 74 KELQISLKQVLTALLNSRTTSHLLRY-------------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSD 140 (183)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHTC-------------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhccccHhhhhh-------------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 44566689999999999999999773 15999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007893 286 PKGQDVHIMAEELSKIFEDTWKKIEAEYN 314 (586)
Q Consensus 286 ~~~s~V~~~A~~L~~~Fe~~~~~i~~~~~ 314 (586)
..++++..++..|+.+|++.++++..++.
T Consensus 141 ~~~~e~~~ag~~l~~~f~~~l~~vfpwf~ 169 (183)
T 3lqh_A 141 GGQPEIKKANSMVKSFFIRQMERVFPWFS 169 (183)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTSC
T ss_pred CCChhhhhhhhHHHHHHHHHHHHHCCCCC
Confidence 99999999999999999999999988765
No 44
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens}
Probab=95.11 E-value=0.028 Score=49.94 Aligned_cols=64 Identities=17% Similarity=0.299 Sum_probs=54.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCh-hhHHHHHHHHHhhCCCCCCCCCcEEEeCCCCCHHHHHHHHHHHH
Q 007893 423 KRDMTYEEKQRLSMNLQELPS-DKLDHVVQIIKKRNPVLSQQDDEIEVDIDTFDPETLWELDRFVT 487 (586)
Q Consensus 423 ~rpMT~eEK~~Ls~~I~~Lp~-ekL~~VV~IIq~~~p~l~~~~dEIEIDId~L~~~TLreL~ryV~ 487 (586)
...=-.+|-+.|-..|-.|-. +.|.+||++|.+ .+++...+..+.+|+.+||..|.++|+.|+.
T Consensus 56 ~~~~y~~~L~~l~~rim~l~d~~~lq~iv~li~~-tG~~~it~~tfDFDLc~LD~~Tv~klq~~l~ 120 (125)
T 2lm0_A 56 CDKAYLDELVELHRRLMTLRERHILQQIVNLIEE-TGHFHITNTTFDFDLCSLDKTTVRKLQSYLE 120 (125)
T ss_dssp CSCSTHHHHHHHHHHHHTCCCCSSHHHHHHHHHT-SCCEEECSSCEEECTTTSCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHh-cCceeeecccccceeeccCHHHHHHHHHHHH
Confidence 334556899999999999987 579999999997 3555557899999999999999999999974
No 45
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=25.93 E-value=1.2e+02 Score=21.77 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHHHH--HHH-HHHHHHhhhhc
Q 007893 101 NREEVRALKRKLASELE--QVT-SLVKRLDATQT 131 (586)
Q Consensus 101 s~~e~~~l~~rl~~el~--qvr-~l~kr~~~~~~ 131 (586)
|..||..+.++|+.||. ..+ .|+|++-+.+.
T Consensus 2 s~~ere~~i~~LreeLR~EEaKLvLLKKlrqSQ~ 35 (43)
T 2l2l_A 2 SPEERERMIKQLKEELRLEEAKLVLLKKLRQSQI 35 (43)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999973 222 47777765543
Done!