BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007894
         (586 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase In Complex With A
           Phosphonate Inhibitor
 pdb|1K8Q|B Chain B, Crystal Structure Of Dog Gastric Lipase In Complex With A
           Phosphonate Inhibitor
          Length = 377

 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 27/175 (15%)

Query: 180 YPSSSVHEIKAEDGRIICCRQWKCGQTPRRLKGEKQLNPVLLLNGYSIESY--WLPMEPN 237
           YP+   +E+  EDG I+   +   G+      G +   PV  L    + S   W+   PN
Sbjct: 25  YPAEE-YEVVTEDGYILGIDRIPYGRKNSENIGRR---PVAFLQHGLLASATNWISNLPN 80

Query: 238 D-LVRTLLEEGHETWLLQSRLHP-------LNPAD----NFTIEDIGRYDIPAAIGKILE 285
           + L   L + G++ WL  SR +         +P       F+ +++ +YD+PA I  IL+
Sbjct: 81  NSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILK 140

Query: 286 LHGHNIKVHIVAHCAGGLAIHIALMGGHISATHIASLSCTNSSMFFKLNALATFK 340
             G + K+H V H  G     IA       A  I +        F+ L  +AT K
Sbjct: 141 KTGQD-KLHYVGHSQGTTIGFIAFSTNPKLAKRIKT--------FYALAPVATVK 186


>pdb|1HLG|A Chain A, Crystal Structure Of Human Gastric Lipase
 pdb|1HLG|B Chain B, Crystal Structure Of Human Gastric Lipase
          Length = 371

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 27/175 (15%)

Query: 180 YPSSSVHEIKAEDGRIICCRQWKCGQTPRRLKGEKQLNPVLLLNGYSIESY--WLPMEPN 237
           YP+   +E+  EDG I+   +   G   ++  G     PV+ L    + S   W+   PN
Sbjct: 17  YPNEE-YEVVTEDGYILEVNRIPYG---KKNSGNTGQRPVVFLQHGLLASATNWISNLPN 72

Query: 238 D-LVRTLLEEGHETWLLQSRLHP-------LNPAD----NFTIEDIGRYDIPAAIGKILE 285
           + L   L + G++ WL  SR +         +P       F+ +++ +YD+PA I  I++
Sbjct: 73  NSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFIVK 132

Query: 286 LHGHNIKVHIVAHCAGGLAIHIALMGGHISATHIASLSCTNSSMFFKLNALATFK 340
             G   ++H V H  G     IA       A  I +        F+ L  +AT K
Sbjct: 133 KTGQK-QLHYVGHSQGTTIGFIAFSTNPSLAKRIKT--------FYALAPVATVK 178


>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
           Homomalla
 pdb|3DY5|C Chain C, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
           Homomalla
          Length = 1066

 Score = 29.6 bits (65), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 21/110 (19%)

Query: 173 PDSY-HKHYPSSSVHEIKAEDGRIICCRQWKCGQTPRRLKGE---KQLNPVLLLNGYSIE 228
           PD++ H +Y S      KA+DG++  CR        R L G+   K+ +    L      
Sbjct: 184 PDTFAHLYYYSQVTMPFKAKDGKVRYCRY-------RALPGDVDIKEEDESGRLTEEEQR 236

Query: 229 SYWL------PMEPNDLVRT----LLEEGHETWLLQSRLHPLNPADNFTI 268
             W+         P+D +R      L++G   + LQ ++H  +P D  TI
Sbjct: 237 KIWIFSRHENEKRPDDYLRKEYVERLQKGPVNYRLQIQIHEASPDDTATI 286


>pdb|1U5U|A Chain A, The Structure Of An Allene Oxide Synthase Reveals A Novel
           Use For A Catalase Fold
 pdb|1U5U|B Chain B, The Structure Of An Allene Oxide Synthase Reveals A Novel
           Use For A Catalase Fold
          Length = 374

 Score = 29.3 bits (64), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 21/110 (19%)

Query: 173 PDSY-HKHYPSSSVHEIKAEDGRIICCRQWKCGQTPRRLKGE---KQLNPVLLLNGYSIE 228
           PD++ H +Y S      KA+DG++  CR        R L G+   K+ +    L      
Sbjct: 184 PDTFAHLYYYSQVTMPFKAKDGKVRYCRY-------RALPGDVDIKEEDESGRLTEEEQR 236

Query: 229 SYWL------PMEPNDLVRT----LLEEGHETWLLQSRLHPLNPADNFTI 268
             W+         P+D +R      L++G   + LQ ++H  +P D  TI
Sbjct: 237 KIWIFSRHENEKRPDDYLRKEYVERLQKGPVNYRLQIQIHEASPDDTATI 286


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.429 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,186,714
Number of Sequences: 62578
Number of extensions: 782165
Number of successful extensions: 1587
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1584
Number of HSP's gapped (non-prelim): 10
length of query: 586
length of database: 14,973,337
effective HSP length: 104
effective length of query: 482
effective length of database: 8,465,225
effective search space: 4080238450
effective search space used: 4080238450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)