BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007894
(586 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8K2A6|LIPM_MOUSE Lipase member M OS=Mus musculus GN=Lipm PE=2 SV=1
Length = 422
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 80/177 (45%), Gaps = 25/177 (14%)
Query: 177 HKHYPSSSVHEIKAEDGRIICCRQWKCGQTPRRLKGEKQLNPVLLLNGY-SIESYWLPME 235
HK YPS +E+ EDG I+ + GQT RLK E VLL +G S W+
Sbjct: 55 HKGYPSEE-YEVATEDGYILSVNRIPRGQT--RLKKEGSRPVVLLQHGLLGDASNWISNL 111
Query: 236 PND-LVRTLLEEGHETWL------LQSRLHPLNPADN-----FTIEDIGRYDIPAAIGKI 283
PN+ L L + G + W+ SR H D F+ +++ R+D+PA I I
Sbjct: 112 PNNSLGFILADAGFDVWMGNSRGNTWSRKHKTLSIDQDEFWAFSYDEMARFDLPAVINFI 171
Query: 284 LELHGHNIKVHIVAHCAGGLAIHIALMGGHISATHIASLSCTNSSMFFKLNALATFK 340
L+ G KV+ V + G G I+ + + L+ M+F L +AT K
Sbjct: 172 LQKTGQK-KVYYVGYSQGTTM-------GFIAFSTMPELA-HKIKMYFALAPIATVK 219
>sp|P04634|LIPG_RAT Gastric triacylglycerol lipase OS=Rattus norvegicus GN=Lipf PE=2
SV=1
Length = 395
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 27/175 (15%)
Query: 180 YPSSSVHEIKAEDGRIICCRQWKCGQTPRRLKGEKQLNPVLLLNGYSIESY--WLPMEPN 237
YP +E+ EDG I+ + G+ G++ PV+ L I S W+ PN
Sbjct: 43 YPCQE-YEVVTEDGYILGVYRIPHGKNNSENIGKR---PVVYLQHGLIASATNWIANLPN 98
Query: 238 D-LVRTLLEEGHETWLLQSRLHPLNPAD-----------NFTIEDIGRYDIPAAIGKILE 285
+ L L + G++ WL SR + + + F+ +++ +YD+PA I I++
Sbjct: 99 NSLAFMLADAGYDVWLGNSRGNTWSRKNVYYSPDSVEFWAFSFDEMAKYDLPATINFIVQ 158
Query: 286 LHGHNIKVHIVAHCAGGLAIHIALMGGHISATHIASLSCTNSSMFFKLNALATFK 340
G K+H V H G IA A I + F+ L +AT K
Sbjct: 159 KTGQE-KIHYVGHSQGTTIGFIAFSTNPTLAKKIKT--------FYALAPVATVK 204
>sp|Q5VYY2|LIPM_HUMAN Lipase member M OS=Homo sapiens GN=LIPM PE=2 SV=2
Length = 423
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 27/178 (15%)
Query: 177 HKHYPSSSVHEIKAEDGRIICCRQWKCGQTPRRLKGEKQLNPVLLLNGYSI--ESYWLPM 234
H+ YP +E+ EDG I+ + G + G + PV+LL + S W+
Sbjct: 55 HQGYPCEE-YEVATEDGYILSVNRIPRGLVQPKKTGSR---PVVLLQHGLVGGASNWISN 110
Query: 235 EPND-LVRTLLEEGHETWL------LQSRLHPLNPADN-----FTIEDIGRYDIPAAIGK 282
PN+ L L + G + W+ SR H D F+ +++ R+D+PA I
Sbjct: 111 LPNNSLGFILADAGFDVWMGNSRGNAWSRKHKTLSIDQDEFWAFSYDEMARFDLPAVINF 170
Query: 283 ILELHGHNIKVHIVAHCAGGLAIHIALMGGHISATHIASLSCTNSSMFFKLNALATFK 340
IL+ G K++ V + G G I+ + + L+ M+F L +AT K
Sbjct: 171 ILQKTGQE-KIYYVGYSQGTTM-------GFIAFSTMPELA-QKIKMYFALAPIATVK 219
>sp|Q9CPP7|LIPG_MOUSE Gastric triacylglycerol lipase OS=Mus musculus GN=Lipf PE=2 SV=1
Length = 395
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 27/175 (15%)
Query: 180 YPSSSVHEIKAEDGRIICCRQWKCGQTPRRLKGEKQLNPVLLLNGYSIESY--WLPMEPN 237
YPS +E+ EDG I+ + G+ G++ PV L I S W+ PN
Sbjct: 43 YPSEE-YEVVTEDGYILGVYRIPYGKKNSENIGKR---PVAYLQHGLIASATNWITNLPN 98
Query: 238 D-LVRTLLEEGHETWLLQSRLHPLNPAD-----------NFTIEDIGRYDIPAAIGKILE 285
+ L L + G++ WL SR + + + F+ +++ +YD+PA I I++
Sbjct: 99 NSLAFILADAGYDVWLGNSRGNTWSRKNVYYSPDSVEFWAFSFDEMAKYDLPATIDFIVQ 158
Query: 286 LHGHNIKVHIVAHCAGGLAIHIALMGGHISATHIASLSCTNSSMFFKLNALATFK 340
G K+H V H G IA A I F+ L +AT K
Sbjct: 159 KTGQE-KIHYVGHSQGTTIGFIAFSTNPALAKKIKR--------FYALAPVATVK 204
>sp|Q5VXI9|LIPN_HUMAN Lipase member N OS=Homo sapiens GN=LIPN PE=2 SV=2
Length = 398
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 19/136 (13%)
Query: 180 YPSSSVHEIKAEDGRIICCRQWKCGQTPRRLKGEKQLNPVLLLNG--YSIESYWLPMEPN 237
YPS +E+ EDG I+ + G+T R G + PV+ + ++ +YWL N
Sbjct: 45 YPSEE-YEVTTEDGYILLVNRIPYGRTHARSTGPR---PVVYMQHALFADNAYWLENYAN 100
Query: 238 DLVRTLL-EEGHETWLLQSRLH-------PLNPADN----FTIEDIGRYDIPAAIGKILE 285
+ LL + G++ W+ SR + L+ D F+ +++ +YD+P I I+
Sbjct: 101 GSLGFLLADAGYDVWMGNSRGNTWSRRHKTLSETDEKFWAFSFDEMAKYDLPGVIDFIVN 160
Query: 286 LHGHNIKVHIVAHCAG 301
G K++ + H G
Sbjct: 161 KTGQE-KLYFIGHSLG 175
>sp|Q8BM14|LIPK_MOUSE Lipase member K OS=Mus musculus GN=Lipk PE=2 SV=1
Length = 398
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 24/168 (14%)
Query: 186 HEIKAEDGRIICCRQWKCGQTPRRLKGEKQLNPVLLLNGY-SIESYWLPMEPNDLVRTLL 244
H++ EDG I+ + G+ R K + V L +G + + W+ PN+ + LL
Sbjct: 48 HDVITEDGYILGTYRIPHGKGCSRKTAPKAV--VYLQHGLIASANNWICNLPNNSLAFLL 105
Query: 245 -EEGHETWLLQSR----------LHPLNPAD-NFTIEDIGRYDIPAAIGKILELHGHNIK 292
+ G++ WL SR L P +P F+ +++ +YD+PA + ILE G +
Sbjct: 106 ADSGYDVWLGNSRGNTWSRNHLRLSPKSPQYWAFSWDEMAKYDLPATVNLILEKSGQK-Q 164
Query: 293 VHIVAHCAGGLAIHIALMGGHISATHIASLSCTNSSMFFKLNALATFK 340
+ V H G IA A I +FF L +AT K
Sbjct: 165 LFYVGHSQGTTIAFIAFSTNPELAKKI--------RLFFALAPVATVK 204
>sp|O74430|TGCE1_SCHPO Probable lipase C1672.09 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPCC1672.09 PE=1 SV=1
Length = 467
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 84/365 (23%), Positives = 145/365 (39%), Gaps = 47/365 (12%)
Query: 186 HEIKAEDGRIICCRQWKCGQTPRRLKGE--KQLNPVLLLNGYSIES-YWL-PMEP-NDLV 240
H ++ ED I+C + +P R+ K+L V +G + S W+ ++P N LV
Sbjct: 95 HLVRTEDDYILCIHR-ISKDSPGRIGSPHPKKLPVVYCHHGLLMNSEVWVCNVDPRNCLV 153
Query: 241 RTLLEEGHETWL------LQSRLH-PLNPAD----NFTIEDIGRYDIPAAIGKILELHGH 289
L+ +G++ WL SR H + D +F+I+D +YDIP I IL+ G
Sbjct: 154 FDLVNKGYDVWLGNNRGNKYSRQHLRFDSTDKEFWDFSIDDFAQYDIPDTIDYILKTSGQ 213
Query: 290 NIKVHI-----VAHCAGGLAIHIALMGGHISATHIASLSCTNSSMFFKLNALATFKMWLP 344
+I A L+IH L+ I++ + +L+ S + F P
Sbjct: 214 TKLTYIGFSQGTAQAFASLSIH-PLLNDKINS--LIALAPAISPKGLHNRVVDAFVKARP 270
Query: 345 LVPVSMAILGKNNILPLLEMSETSFRHHLLRCIARFIPRYERCTCNECEVLSGVFG---- 400
+ + G+ +ILP F L P++ C LS +F
Sbjct: 271 --SILFFLFGRKSILP-----SAGFWQSFL------APKFFDAVLAYC--LSQLFNWSCQ 315
Query: 401 NVFWHQNISRTMHHWIYRENTTRLPMAGFPHLRKICNSGFIVDSHGNNSYLIHPERMKLS 460
N+ +Q + H +Y + + + F +R + D G++ +L + + K
Sbjct: 316 NISSYQRLVSFAH--LYSYTSVKCLVHWFQIMRSAEFRMYDNDQLGHDYFLKYYKAAKFP 373
Query: 461 TLYISGGRSLLVTPETSFLANKYMKMHQPGFRHERVVVDGFGHSDLLIGEESDKKVFPHI 520
T I L+ S + + M P E V VD + H D++ + V P +
Sbjct: 374 TNNIRTPIYLIWGGSDSLVDIQAMLNALPA-EVEHVKVDSYEHLDMIWADTVKDYVIPPV 432
Query: 521 LSHIR 525
L +R
Sbjct: 433 LRRLR 437
>sp|P80035|LIPG_CANFA Gastric triacylglycerol lipase OS=Canis familiaris GN=LIPF PE=1
SV=2
Length = 398
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 27/175 (15%)
Query: 180 YPSSSVHEIKAEDGRIICCRQWKCGQTPRRLKGEKQLNPVLLLNGYSIESY--WLPMEPN 237
YP+ +E+ EDG I+ + G+ G + PV L + S W+ PN
Sbjct: 44 YPAEE-YEVVTEDGYILGIDRIPYGRKNSENIGRR---PVAFLQHGLLASATNWISNLPN 99
Query: 238 D-LVRTLLEEGHETWLLQSRLHP-------LNPAD----NFTIEDIGRYDIPAAIGKILE 285
+ L L + G++ WL SR + +P F+ +++ +YD+PA I IL+
Sbjct: 100 NSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILK 159
Query: 286 LHGHNIKVHIVAHCAGGLAIHIALMGGHISATHIASLSCTNSSMFFKLNALATFK 340
G + K+H V H G IA A I + F+ L +AT K
Sbjct: 160 KTGQD-KLHYVGHSQGTTIGFIAFSTNPKLAKRIKT--------FYALAPVATVK 205
>sp|P07098|LIPG_HUMAN Gastric triacylglycerol lipase OS=Homo sapiens GN=LIPF PE=1 SV=1
Length = 398
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 27/175 (15%)
Query: 180 YPSSSVHEIKAEDGRIICCRQWKCGQTPRRLKGEKQLNPVLLLNGYSIESY--WLPMEPN 237
YP+ +E+ EDG I+ + G ++ G PV+ L + S W+ PN
Sbjct: 44 YPNEE-YEVVTEDGYILEVNRIPYG---KKNSGNTGQRPVVFLQHGLLASATNWISNLPN 99
Query: 238 D-LVRTLLEEGHETWLLQSRLHP-------LNPAD----NFTIEDIGRYDIPAAIGKILE 285
+ L L + G++ WL SR + +P F+ +++ +YD+PA I I++
Sbjct: 100 NSLAFILADAGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFIVK 159
Query: 286 LHGHNIKVHIVAHCAGGLAIHIALMGGHISATHIASLSCTNSSMFFKLNALATFK 340
G ++H V H G IA A I + F+ L +AT K
Sbjct: 160 KTGQK-QLHYVGHSQGTTIGFIAFSTNPSLAKRIKT--------FYALAPVATVK 205
>sp|Q5VXJ0|LIPK_HUMAN Lipase member K OS=Homo sapiens GN=LIPK PE=2 SV=2
Length = 399
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 26/169 (15%)
Query: 186 HEIKAEDGRIICCRQWKCGQTPRRLKGEKQLNPVLLLNGYSIESY--WLPMEPNDLVRTL 243
+++ +DG I+ + G R G P + L I S W+ PN+ + L
Sbjct: 49 YDVTTKDGYILGIYRIPHG---RGCPGRTAPKPAVYLQHGLIASASNWICNLPNNSLAFL 105
Query: 244 L-EEGHETWLLQSR----------LHPLNPAD-NFTIEDIGRYDIPAAIGKILELHGHNI 291
L + G++ WL SR L P +P F+++++ +YD+PA I I+E G
Sbjct: 106 LADSGYDVWLGNSRGNTWSRKHLKLSPKSPEYWAFSLDEMAKYDLPATINFIIEKTGQK- 164
Query: 292 KVHIVAHCAGGLAIHIALMGGHISATHIASLSCTNSSMFFKLNALATFK 340
+++ V H G IA A I +FF L + T K
Sbjct: 165 RLYYVGHSQGTTIAFIAFSTNPELAKKI--------KIFFALAPVVTVK 205
>sp|P38571|LICH_HUMAN Lysosomal acid lipase/cholesteryl ester hydrolase OS=Homo sapiens
GN=LIPA PE=1 SV=2
Length = 399
Score = 41.6 bits (96), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 80/190 (42%), Gaps = 31/190 (16%)
Query: 180 YPSSSVHEIKAEDGRIICCRQWKCGQTPRRLKGEKQLNPVLLLNG--YSIESYWLPMEPN 237
+PS + ++ EDG I+C + G+ KG K PV+ L + S W+ N
Sbjct: 46 FPSEE-YLVETEDGYILCLNRIPHGRKNHSDKGPK---PVVFLQHGLLADSSNWVTNLAN 101
Query: 238 D-LVRTLLEEGHETWLLQSRLHPLNPADN-----------FTIEDIGRYDIPAAIGKILE 285
L L + G + W+ SR + + F+ +++ +YD+PA+I IL
Sbjct: 102 SSLGFILADAGFDVWMGNSRGNTWSRKHKTLSVSQDEFWAFSYDEMAKYDLPASINFILN 161
Query: 286 LHGHNIKVHIVAHCAGGLAIHIALMGGHISATHIASLSCTNSSMFFKLNALATFKMWLPL 345
G +V+ V H G G I+ + I L+ MFF L +A+ +
Sbjct: 162 KTGQE-QVYYVGHSQGTTI-------GFIAFSQIPELA-KRIKMFFALGPVAS----VAF 208
Query: 346 VPVSMAILGK 355
MA LG+
Sbjct: 209 CTSPMAKLGR 218
>sp|A5CC92|RPOC_ORITB DNA-directed RNA polymerase subunit beta' OS=Orientia tsutsugamushi
(strain Boryong) GN=rpoC PE=3 SV=1
Length = 1396
Score = 41.2 bits (95), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 476 TSFLANKYMKMHQPGFRHERVVVDGFGHSDLLIGEESDKKVFPHILSHIRLAEQGKNGVI 535
T A+K MK+ GF++ + FG D+++ E K V +L Q G+I
Sbjct: 622 TVVFADKLMKL---GFKYACISGISFGMDDMIVPETKSKHVNDTLLEVQEFERQYSEGLI 678
Query: 536 SSGEKYSKESLAW 548
+SGEKY+K AW
Sbjct: 679 TSGEKYNKVIDAW 691
>sp|Q67ZU1|LIP2_ARATH Triacylglycerol lipase 2 OS=Arabidopsis thaliana GN=LIP2 PE=2 SV=1
Length = 418
Score = 41.2 bits (95), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 15/131 (11%)
Query: 186 HEIKAEDGRIICCRQWKCGQTPRRLKGEKQLNPVLLLNGYSIESYWLPMEPND--LVRTL 243
H++ +DG I+ ++ G+ + PVL+ +G ++ + P D L L
Sbjct: 66 HDVVTQDGYILNMQRIPEGRAGAVAGDGGKRQPVLIQHGILVDGMSWLLNPADQNLPLIL 125
Query: 244 LEEGHETWLLQ------SRLHP-LNPAD----NFTIEDIGRYDIPAAIGKILELHGHNIK 292
++G + W+ SR H LNP+ N+T +++ YD+PA I L G K
Sbjct: 126 ADQGFDVWMGNTRGTRFSRRHKYLNPSQRAFWNWTWDELVSYDLPAMFDHIHGLTGQ--K 183
Query: 293 VHIVAHCAGGL 303
+H + H G L
Sbjct: 184 IHYLGHSLGTL 194
>sp|O46107|LIP1_DROME Lipase 1 OS=Drosophila melanogaster GN=Lip1 PE=2 SV=2
Length = 439
Score = 40.8 bits (94), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 24/132 (18%)
Query: 183 SSVHEIKAEDGRIICCRQWKCGQTPRRLKGEKQLNPVLLLNGYSIESY-WLPMEPN-DLV 240
S VH + EDG I+ + + P P LL +G S ++ M PN L
Sbjct: 79 SEVHHVTTEDGYILTMHRIRKQGAP----------PFLLQHGLVDSSAGFVVMGPNVSLA 128
Query: 241 RTLLEEGHETWLLQSRLH-------PLNPAD----NFTIEDIGRYDIPAAIGKILELHGH 289
L + ++ WL +R + L+P + +F+ +IG YD+PA I +L++ G
Sbjct: 129 YLLADHNYDVWLGNARGNRYSRNHTTLDPDESKFWDFSWHEIGMYDLPAMIDHVLKVTGF 188
Query: 290 NIKVHIVAHCAG 301
K+H H G
Sbjct: 189 P-KLHYAGHSQG 199
>sp|B3CV54|RPOC_ORITI DNA-directed RNA polymerase subunit beta' OS=Orientia tsutsugamushi
(strain Ikeda) GN=rpoC PE=3 SV=1
Length = 1396
Score = 40.4 bits (93), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 476 TSFLANKYMKMHQPGFRHERVVVDGFGHSDLLIGEESDKKVFPHILSHIRLAEQGKNGVI 535
T A+K MK+ GF++ + FG D+++ E K V +L Q G+I
Sbjct: 622 TVVFADKLMKL---GFKYACMSGISFGMDDMIVPETKSKHVNDTLLEVQEFERQYSEGLI 678
Query: 536 SSGEKYSKESLAW 548
+SGEKY+K AW
Sbjct: 679 TSGEKYNKVIDAW 691
>sp|O46108|LIP3_DROME Lipase 3 OS=Drosophila melanogaster GN=Lip3 PE=2 SV=1
Length = 394
Score = 40.4 bits (93), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 186 HEIKAEDGRIICCRQWKCGQTPRRLKGEKQLNPV-LLLNGY-SIESYWLPMEPN-DLVRT 242
HE+ D I+ + +P+ GE PV L++G S S W+ M P L
Sbjct: 42 HEVVTSDNYILTMH--RIPYSPK--TGESSNRPVAFLMHGMLSSSSDWVLMGPERSLAYM 97
Query: 243 LLEEGHETWLLQSRLHPLNPAD-----------NFTIEDIGRYDIPAAIGKILELHGHNI 291
L + G++ W+ +R + + A NF+ +IG YD+PA I +L G
Sbjct: 98 LADAGYDVWMGNARGNTYSKAHKYWPTYWQIFWNFSWNEIGMYDVPAMIDYVLAKTGQQ- 156
Query: 292 KVHIVAHCAG 301
+V V H G
Sbjct: 157 QVQYVGHSQG 166
>sp|Q4R4S5|LICH_MACFA Lysosomal acid lipase/cholesteryl ester hydrolase OS=Macaca
fascicularis GN=LIPA PE=2 SV=1
Length = 399
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 31/190 (16%)
Query: 180 YPSSSVHEIKAEDGRIICCRQWKCGQTPRRLKGEKQLNPVLLLNG--YSIESYWLPMEPN 237
+PS + ++ EDG I+C + G+ KG K PV+ L + S W+ N
Sbjct: 46 FPSEE-YLVETEDGYILCLNRIPHGRKNHSDKGPK---PVVFLQHGLLADSSNWVTNLAN 101
Query: 238 D-LVRTLLEEGHETWLLQSRLHPLNPADN-----------FTIEDIGRYDIPAAIGKILE 285
L L + G + W+ SR + + F+ +++ +YD+PA+I IL
Sbjct: 102 SSLGFILADAGFDVWMGNSRGNTWSRKHKTLSVSQDEFWAFSYDEMAKYDLPASINFILN 161
Query: 286 LHGHNIKVHIVAHCAGGLAIHIALMGGHISATHIASLSCTNSSMFFKLNALATFKMWLPL 345
G +V+ V H G G I+ + I L+ MFF L + + +
Sbjct: 162 KTGQE-QVYYVGHSQGTTI-------GFIAFSQIPELA-KRIKMFFALAPVVS----VDF 208
Query: 346 VPVSMAILGK 355
MA LG+
Sbjct: 209 CTSPMAKLGR 218
>sp|A5VBZ7|RPOC_SPHWW DNA-directed RNA polymerase subunit beta' OS=Sphingomonas wittichii
(strain RW1 / DSM 6014 / JCM 10273) GN=rpoC PE=3 SV=1
Length = 1423
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 475 ETSFLANKYMKMHQPGFRHERVVVDGFGHSDLLIGEESDKKVFPHILSHIRLAEQGKNGV 534
ET A+ M + GFRH FG D++I E +K+V L +Q ++G+
Sbjct: 615 ETVLFADAIMAL---GFRHAFQAGISFGKDDMIIPEAKEKEVEETRLLVKDFEQQYQDGL 671
Query: 535 ISSGEKYSKESLAW 548
I+ EKY+K AW
Sbjct: 672 ITQQEKYNKVIDAW 685
>sp|A5HJM1|IL7RA_CALJA Interleukin-7 receptor subunit alpha OS=Callithrix jacchus GN=IL7R
PE=2 SV=1
Length = 459
Score = 36.2 bits (82), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 447 NNSYLIHPER-MKLSTLYISGGRSLLVTPETSFLANKYMK--MHQPGFRHER 495
N + ++ PE LS +Y G LVT TS L KY+K MH +RHE+
Sbjct: 122 NVATIVKPEAPFDLSVIYREGANDFLVTFNTSHLQKKYVKVLMHDVAYRHEK 173
>sp|Q64194|LICH_RAT Lysosomal acid lipase/cholesteryl ester hydrolase OS=Rattus
norvegicus GN=Lipa PE=2 SV=1
Length = 397
Score = 35.8 bits (81), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 25/170 (14%)
Query: 177 HKHYPSSSVHEIKAEDGRIICCRQWKCGQTPRRLKGEKQLNPVLLLNGYSIESY-WLP-M 234
H YP H ++ DG I+ + G+ + KG K + + +G+ +S W+ +
Sbjct: 41 HWGYPE---HSVQTGDGYILGVHRIPHGRKNQFDKGPKPVVYLQWRHGFLADSSNWVTNI 97
Query: 235 EPNDLVRTLLEEGHETWLLQSRLHPLNPADN-----------FTIEDIGRYDIPAAIGKI 283
+ N L L + G + W+ SR + + F+ +++ +YD+PA+I I
Sbjct: 98 DNNSLGFILADAGFDVWMGNSRGNTWSRKHKTLSVSQDEYWAFSFDEMAKYDLPASINYI 157
Query: 284 LELHGHNIKVHIVAHCAGGLAIHIALMGGHISATHIASLSCTNSSMFFKL 333
L G +++ V H G G I+ + + L+ MFF L
Sbjct: 158 LNKTGQE-QLYNVGHSQGCTI-------GFIAFSQMPELA-KKVKMFFAL 198
>sp|A7HWQ5|RPOC_PARL1 DNA-directed RNA polymerase subunit beta' OS=Parvibaculum
lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)
GN=rpoC PE=3 SV=1
Length = 1397
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 475 ETSFLANKYMKMHQPGFRHERVVVDGFGHSDLLIGEESDKKVFPHILSHIRLAEQGKNGV 534
ET ++ M + GFR FG D++I EE K V +Q +G+
Sbjct: 616 ETVIFCDQIMAL---GFRQAFRAGISFGKDDMVIPEEKAKLVEETQTLATEYEQQYIDGL 672
Query: 535 ISSGEKYSKESLAW 548
I+ GEKY+K AW
Sbjct: 673 ITQGEKYNKVVDAW 686
>sp|A9H3S0|RPOC_GLUDA DNA-directed RNA polymerase subunit beta' OS=Gluconacetobacter
diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5)
GN=rpoC PE=3 SV=1
Length = 1398
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 485 KMHQPGFRHERVVVDGFGHSDLLIGEESDKKVFPHILSHIRLAEQG-KNGVISSGEKYSK 543
+M GFRH FG D++I E K + + ++ EQ ++G+I++GE+Y+K
Sbjct: 641 RMMGLGFRHAAKAGISFGKDDMIIPAEK-KVLVERTAAEVKEFEQQYQDGLITAGERYNK 699
Query: 544 ESLAW 548
AW
Sbjct: 700 VVDAW 704
>sp|Q9RH40|RPOC_RICCN DNA-directed RNA polymerase subunit beta' OS=Rickettsia conorii
(strain ATCC VR-613 / Malish 7) GN=rpoC PE=3 SV=2
Length = 1372
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 476 TSFLANKYMKMHQPGFRHERVVVDGFGHSDLLIGEESDKKVFPHILSHIRLAEQGKNGVI 535
T A++ MK+ GF++ FG D+++ E + L +Q NG+I
Sbjct: 615 TVIFADQLMKL---GFKYACSSGISFGMDDMVVPESKSTHINETQLEIKEFEQQYSNGLI 671
Query: 536 SSGEKYSKESLAW 548
+ GEKY+K AW
Sbjct: 672 TYGEKYNKVVDAW 684
>sp|Q57CP9|RPOC_BRUAB DNA-directed RNA polymerase subunit beta' OS=Brucella abortus
biovar 1 (strain 9-941) GN=rpoC PE=3 SV=1
Length = 1400
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 475 ETSFLANKYMKMHQPGFRHERVVVDGFGHSDLLIGEESDKKVFPHILSHIRLAEQGKNGV 534
ET ++ M++ GF H FG D++I E K V +Q +G+
Sbjct: 616 ETVIFCDRIMQL---GFAHACRAGISFGKDDMVIPESKAKIVAETEALTTEYEQQYNDGL 672
Query: 535 ISSGEKYSKESLAW 548
I+ GEKY+K AW
Sbjct: 673 ITQGEKYNKVVDAW 686
>sp|Q2YM16|RPOC_BRUA2 DNA-directed RNA polymerase subunit beta' OS=Brucella abortus
(strain 2308) GN=rpoC PE=3 SV=1
Length = 1400
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 475 ETSFLANKYMKMHQPGFRHERVVVDGFGHSDLLIGEESDKKVFPHILSHIRLAEQGKNGV 534
ET ++ M++ GF H FG D++I E K V +Q +G+
Sbjct: 616 ETVIFCDRIMQL---GFAHACRAGISFGKDDMVIPESKAKIVAETEALTTEYEQQYNDGL 672
Query: 535 ISSGEKYSKESLAW 548
I+ GEKY+K AW
Sbjct: 673 ITQGEKYNKVVDAW 686
>sp|B2S686|RPOC_BRUA1 DNA-directed RNA polymerase subunit beta' OS=Brucella abortus
(strain S19) GN=rpoC PE=3 SV=1
Length = 1400
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 475 ETSFLANKYMKMHQPGFRHERVVVDGFGHSDLLIGEESDKKVFPHILSHIRLAEQGKNGV 534
ET ++ M++ GF H FG D++I E K V +Q +G+
Sbjct: 616 ETVIFCDRIMQL---GFAHACRAGISFGKDDMVIPESKAKIVAETEALTTEYEQQYNDGL 672
Query: 535 ISSGEKYSKESLAW 548
I+ GEKY+K AW
Sbjct: 673 ITQGEKYNKVVDAW 686
>sp|Q8G070|RPOC_BRUSU DNA-directed RNA polymerase subunit beta' OS=Brucella suis biovar 1
(strain 1330) GN=rpoC PE=3 SV=1
Length = 1400
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 475 ETSFLANKYMKMHQPGFRHERVVVDGFGHSDLLIGEESDKKVFPHILSHIRLAEQGKNGV 534
ET ++ M++ GF H FG D++I E K V +Q +G+
Sbjct: 616 ETVIFCDRIMQL---GFAHACRAGISFGKDDMVIPESKAKIVAETEALTTEYEQQYNDGL 672
Query: 535 ISSGEKYSKESLAW 548
I+ GEKY+K AW
Sbjct: 673 ITQGEKYNKVVDAW 686
>sp|B0CH40|RPOC_BRUSI DNA-directed RNA polymerase subunit beta' OS=Brucella suis (strain
ATCC 23445 / NCTC 10510) GN=rpoC PE=3 SV=1
Length = 1400
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 475 ETSFLANKYMKMHQPGFRHERVVVDGFGHSDLLIGEESDKKVFPHILSHIRLAEQGKNGV 534
ET ++ M++ GF H FG D++I E K V +Q +G+
Sbjct: 616 ETVIFCDRIMQL---GFAHACRAGISFGKDDMVIPESKAKIVAETEALTTEYEQQYNDGL 672
Query: 535 ISSGEKYSKESLAW 548
I+ GEKY+K AW
Sbjct: 673 ITQGEKYNKVVDAW 686
>sp|Q68XM7|RPOC_RICTY DNA-directed RNA polymerase subunit beta' OS=Rickettsia typhi
(strain ATCC VR-144 / Wilmington) GN=rpoC PE=3 SV=1
Length = 1372
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 476 TSFLANKYMKMHQPGFRHERVVVDGFGHSDLLIGEESDKKVFPHILSHIRLAEQGKNGVI 535
T A++ MK+ GF++ FG D+++ E + L +Q NG+I
Sbjct: 615 TVIFADQLMKL---GFKYACSSGISFGMDDMVVPESKSTHINETQLEIKEFEQQYSNGLI 671
Query: 536 SSGEKYSKESLAW 548
+ GEKY+K AW
Sbjct: 672 TYGEKYNKVVDAW 684
>sp|A9M5Q8|RPOC_BRUC2 DNA-directed RNA polymerase subunit beta' OS=Brucella canis (strain
ATCC 23365 / NCTC 10854) GN=rpoC PE=3 SV=1
Length = 1400
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 475 ETSFLANKYMKMHQPGFRHERVVVDGFGHSDLLIGEESDKKVFPHILSHIRLAEQGKNGV 534
ET ++ M++ GF H FG D++I E K V +Q +G+
Sbjct: 616 ETVIFCDRIMQL---GFAHACRAGISFGKDDMVIPESKAKIVAETEALTTEYEQQYNDGL 672
Query: 535 ISSGEKYSKESLAW 548
I+ GEKY+K AW
Sbjct: 673 ITQGEKYNKVVDAW 686
>sp|A8GQW5|RPOC_RICRS DNA-directed RNA polymerase subunit beta' OS=Rickettsia rickettsii
(strain Sheila Smith) GN=rpoC PE=3 SV=1
Length = 1372
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 476 TSFLANKYMKMHQPGFRHERVVVDGFGHSDLLIGEESDKKVFPHILSHIRLAEQGKNGVI 535
T A++ MK+ GF++ FG D+++ E + L +Q NG+I
Sbjct: 615 TVIFADQLMKL---GFKYACSSGISFGMDDMVVPESKSTHINKTQLEIKEFEQQYSNGLI 671
Query: 536 SSGEKYSKESLAW 548
+ GEKY+K AW
Sbjct: 672 TYGEKYNKVVDAW 684
>sp|B0BWB0|RPOC_RICRO DNA-directed RNA polymerase subunit beta' OS=Rickettsia rickettsii
(strain Iowa) GN=rpoC PE=3 SV=1
Length = 1372
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 476 TSFLANKYMKMHQPGFRHERVVVDGFGHSDLLIGEESDKKVFPHILSHIRLAEQGKNGVI 535
T A++ MK+ GF++ FG D+++ E + L +Q NG+I
Sbjct: 615 TVIFADQLMKL---GFKYACSSGISFGMDDMVVPESKSTHINKTQLEIKEFEQQYSNGLI 671
Query: 536 SSGEKYSKESLAW 548
+ GEKY+K AW
Sbjct: 672 TYGEKYNKVVDAW 684
>sp|C0RJK9|RPOC_BRUMB DNA-directed RNA polymerase subunit beta' OS=Brucella melitensis
biotype 2 (strain ATCC 23457) GN=rpoC PE=3 SV=1
Length = 1400
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 475 ETSFLANKYMKMHQPGFRHERVVVDGFGHSDLLIGEESDKKVFPHILSHIRLAEQGKNGV 534
ET ++ M++ GF H FG D++I E K V +Q +G+
Sbjct: 616 ETVIFCDRIMQL---GFAHACRAGISFGKDDMVIPESKAKIVAETEALTTEYEQQYNDGL 672
Query: 535 ISSGEKYSKESLAW 548
I+ GEKY+K AW
Sbjct: 673 ITQGEKYNKVVDAW 686
>sp|Q9ZE20|RPOC_RICPR DNA-directed RNA polymerase subunit beta' OS=Rickettsia prowazekii
(strain Madrid E) GN=rpoC PE=3 SV=1
Length = 1372
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 476 TSFLANKYMKMHQPGFRHERVVVDGFGHSDLLIGEESDKKVFPHILSHIRLAEQGKNGVI 535
T A++ MK+ GF++ FG D+++ E + L +Q NG+I
Sbjct: 615 TVIFADQLMKL---GFKYACSSGISFGMDDMVVPESKSTHINETQLEIKEFEQQYSNGLI 671
Query: 536 SSGEKYSKESLAW 548
+ GEKY+K AW
Sbjct: 672 TYGEKYNKVVDAW 684
>sp|A8F0P8|RPOC_RICM5 DNA-directed RNA polymerase subunit beta' OS=Rickettsia massiliae
(strain Mtu5) GN=rpoC PE=3 SV=1
Length = 1374
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 476 TSFLANKYMKMHQPGFRHERVVVDGFGHSDLLIGEESDKKVFPHILSHIRLAEQGKNGVI 535
T A++ MK+ GF++ FG D+++ E + L +Q NG+I
Sbjct: 617 TVIFADQLMKL---GFKYACSSGISFGMDDMVVPESKSTHINETQLEIQEFEQQYSNGLI 673
Query: 536 SSGEKYSKESLAW 548
+ GEKY+K AW
Sbjct: 674 TYGEKYNKVVDAW 686
>sp|A5VR14|RPOC_BRUO2 DNA-directed RNA polymerase subunit beta' OS=Brucella ovis (strain
ATCC 25840 / 63/290 / NCTC 10512) GN=rpoC PE=3 SV=1
Length = 1400
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 475 ETSFLANKYMKMHQPGFRHERVVVDGFGHSDLLIGEESDKKVFPHILSHIRLAEQGKNGV 534
ET ++ M++ GF H FG D++I E K V +Q +G+
Sbjct: 616 ETVIFCDRIMQL---GFAHACRAGISFGKDDMVIPESKAKIVAETEALTTEYEQQYNDGL 672
Query: 535 ISSGEKYSKESLAW 548
I+ GEKY+K AW
Sbjct: 673 ITQGEKYNKVVDAW 686
>sp|Q8YHP7|RPOC_BRUME DNA-directed RNA polymerase subunit beta' OS=Brucella melitensis
biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=rpoC
PE=3 SV=1
Length = 1400
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 475 ETSFLANKYMKMHQPGFRHERVVVDGFGHSDLLIGEESDKKVFPHILSHIRLAEQGKNGV 534
ET ++ M++ GF H FG D++I E K V +Q +G+
Sbjct: 616 ETVIFCDRIMQL---GFAHACRAGISFGKDDMVIPESKAKIVAETEALTTEYEQQYNDGL 672
Query: 535 ISSGEKYSKESLAW 548
I+ GEKY+K AW
Sbjct: 673 ITQGEKYNKVVDAW 686
>sp|A8EXK9|RPOC_RICCK DNA-directed RNA polymerase subunit beta' OS=Rickettsia canadensis
(strain McKiel) GN=rpoC PE=3 SV=1
Length = 1378
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 476 TSFLANKYMKMHQPGFRHERVVVDGFGHSDLLIGEESDKKVFPHILSHIRLAEQGKNGVI 535
T A++ MK+ GF++ FG D+++ E + L +Q NG+I
Sbjct: 615 TVIFADQLMKL---GFKYACSSGISFGMDDMVVPESKSTHINETQLEIKEFEQQYSNGLI 671
Query: 536 SSGEKYSKESLAW 548
+ GEKY+K AW
Sbjct: 672 TYGEKYNKVVDAW 684
>sp|A8GMA8|RPOC_RICAH DNA-directed RNA polymerase subunit beta' OS=Rickettsia akari
(strain Hartford) GN=rpoC PE=3 SV=1
Length = 1372
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 476 TSFLANKYMKMHQPGFRHERVVVDGFGHSDLLIGEESDKKVFPHILSHIRLAEQGKNGVI 535
T A++ MK+ GF++ FG D+++ E + L +Q NG+I
Sbjct: 615 TVIFADQLMKL---GFKYACSSGISFGMDDMVVPESKSTHINETQLEIKEFEQQYSNGLI 671
Query: 536 SSGEKYSKESLAW 548
+ GEKY+K AW
Sbjct: 672 TYGEKYNKVVDAW 684
>sp|Q4UKD5|RPOC_RICFE DNA-directed RNA polymerase subunit beta' OS=Rickettsia felis
(strain ATCC VR-1525 / URRWXCal2) GN=rpoC PE=3 SV=1
Length = 1372
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 476 TSFLANKYMKMHQPGFRHERVVVDGFGHSDLLIGEESDKKVFPHILSHIRLAEQGKNGVI 535
T A++ MK+ GF++ FG D+++ E + L +Q NG+I
Sbjct: 615 TVIFADQLMKL---GFKYACSSGISFGMDDMVVPESKSTHINETQLEIKEFEQQYSNGLI 671
Query: 536 SSGEKYSKESLAW 548
+ GEKY+K AW
Sbjct: 672 TYGEKYNKVVDAW 684
>sp|Q7Z5Y7|KCD20_HUMAN BTB/POZ domain-containing protein KCTD20 OS=Homo sapiens GN=KCTD20
PE=1 SV=1
Length = 419
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 517 FPHILSHIRLAEQGKNGVISSGEKYSKESLAWEDDFYSASRGFGSSWYSQRIVVLLMLL 575
FPHI+ LAE K SG K + E + F ++S GFGS+ +SQ + +L+
Sbjct: 68 FPHIMP---LAEDIKGSCFQSGNKRNHEPFIAPERFGNSSVGFGSNSHSQAPEKVTLLV 123
>sp|Q5FTX8|RPOC_GLUOX DNA-directed RNA polymerase subunit beta' OS=Gluconobacter oxydans
(strain 621H) GN=rpoC PE=3 SV=1
Length = 1439
Score = 34.7 bits (78), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 490 GFRHERVVVDGFGHSDLLIGEESDKKVFPHILSHIRLAEQGKNGVISSGEKYSKESLAW 548
GFRH FG D++I E V +Q ++G+I++GE+Y+K AW
Sbjct: 685 GFRHAARAGISFGKDDMIIPEAKATLVGKTSEEVKEFEQQYQDGLITAGERYNKVVDAW 743
>sp|A6X0B0|RPOC_OCHA4 DNA-directed RNA polymerase subunit beta' OS=Ochrobactrum anthropi
(strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=rpoC PE=3
SV=1
Length = 1400
Score = 33.1 bits (74), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 475 ETSFLANKYMKMHQPGFRHERVVVDGFGHSDLLIGEESDKKVFPHILSHIRLAEQGKNGV 534
ET ++ M++ GF H FG D++I + K V +Q +G+
Sbjct: 616 ETVIFCDRIMQL---GFAHACRAGISFGKDDMVIPDTKAKIVADTEALTTEYEQQYNDGL 672
Query: 535 ISSGEKYSKESLAW 548
I+ GEKY+K AW
Sbjct: 673 ITQGEKYNKVVDAW 686
>sp|Q11HB4|RPOC_MESSB DNA-directed RNA polymerase subunit beta' OS=Mesorhizobium sp.
(strain BNC1) GN=rpoC PE=3 SV=1
Length = 1399
Score = 33.1 bits (74), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 475 ETSFLANKYMKMHQPGFRHERVVVDGFGHSDLLIGEESDKKVFPHILSHIRLAEQGKNGV 534
ET ++ M + GF H FG D++I E K + +Q +G+
Sbjct: 616 ETVIFCDRIMAL---GFSHACKAGISFGKDDMVIPETKAKLIAETEALAKEYEQQYNDGL 672
Query: 535 ISSGEKYSKESLAW 548
I+ GEKY+K AW
Sbjct: 673 ITQGEKYNKVVDAW 686
>sp|Q5W064|LIPJ_HUMAN Lipase member J OS=Homo sapiens GN=LIPJ PE=2 SV=3
Length = 366
Score = 33.1 bits (74), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 81/383 (21%), Positives = 148/383 (38%), Gaps = 68/383 (17%)
Query: 180 YPSSSVHEIKAEDGRIICCRQWKCGQTPRRLKGEKQLNPVLLLNGY-SIESYWLPMEPND 238
YP ++I EDG I+ + +T K Q V L +G + S W+ PN+
Sbjct: 12 YPDEE-YDIVTEDGYILGLYRIPYWRTDNN-KNLAQRVVVYLQHGLLTSASSWISNLPNN 69
Query: 239 -LVRTLLEEGHETWLLQSRLHPLNPAD-----------NFTIEDIGRYDIPAAIGKILEL 286
L L + G++ W+ SR + + F+ +++ +YD+PA+I ++
Sbjct: 70 SLGFILADAGYDVWMGNSRGNTWSRKHLYLETSSKEFWAFSFDEMAKYDLPASIDFTVK- 128
Query: 287 HGHNIKVHIVAHCAGGLAIHIALMGGHISATHIASLSCTNSSMFFKLNALATFKMWLPLV 346
++ V H G G I+ + I+ ++ F +T + PL+
Sbjct: 129 QTRQEEIFYVGHSQGTTI-------GFITFSTISKIAERIKIFFALAPVFSTKYLKSPLI 181
Query: 347 -------PVSMAILGKNNILPLLEMSETSFRHHLLRCIARFIPRYERCTCNECEVLSGVF 399
+ MA G + LP +TSF+ + + + +++ N +L +F
Sbjct: 182 RMTYKWKSIVMAFSGNKDFLP-----KTSFKKFIGSKLCP-LQIFDKICLN---ILFMMF 232
Query: 400 G-----------NVFWHQNISRT----MHHWIYRENTTRLPMA--GFPHLRKICNSGFIV 442
G +V++ N + T M HW N+T L G P L +V
Sbjct: 233 GYDPKNLNMSRLDVYFSHNPAGTSVQNMLHWSQLLNSTHLKAYDWGSPDLN-------LV 285
Query: 443 DSHGNNSYLIHPERMKLSTLYISGGRSLLVTPETSFLANKYMKMHQPGFRHERVVVDGFG 502
+ S L + M ++T +G LL PE + + + H + +
Sbjct: 286 HYNQTTSPLYNMTNMNVATAIWNGKSDLLADPEDVNILHSEITNHI-----YYKTISYYN 340
Query: 503 HSDLLIGEESDKKVFPHILSHIR 525
H D L G + +V+ I+ I+
Sbjct: 341 HIDSLFGLDVYDQVYHEIIDIIQ 363
>sp|A1S212|RPOC_SHEAM DNA-directed RNA polymerase subunit beta' OS=Shewanella amazonensis
(strain ATCC BAA-1098 / SB2B) GN=rpoC PE=3 SV=1
Length = 1404
Score = 33.1 bits (74), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 475 ETSFLANKYMKMHQPGFRHERVVVDGFGHSDLLIGEESDKKVFPHILSHIRLAEQGKNGV 534
+T A++ M GF++ + G +D++I EE V I + EQ ++G+
Sbjct: 616 DTVIFADQLMYT---GFQYATISGASVGINDMVIPEEKYSLVADAEAEVIEIQEQFQSGL 672
Query: 535 ISSGEKYSKESLAWEDDFYSASRGFGSSWYSQRIV 569
+++GE+Y+K W S+ + S+ ++
Sbjct: 673 VTAGERYNKVIDIWASANEKVSKAMMENLSSETVI 707
>sp|A1USC9|RPOC_BARBK DNA-directed RNA polymerase subunit beta' OS=Bartonella
bacilliformis (strain ATCC 35685 / KC583) GN=rpoC PE=3
SV=1
Length = 1403
Score = 33.1 bits (74), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 475 ETSFLANKYMKMHQPGFRHERVVVDGFGHSDLLIGEESDKKVFPHILSHIRLAEQGKNGV 534
ET ++ M++ GF H FG D++I E + V +Q +G+
Sbjct: 616 ETVVFCDRIMQL---GFSHACRAGISFGKDDMVIPESKSRLVAETEALVKEYEQQYDDGL 672
Query: 535 ISSGEKYSKESLAW 548
I+ GEKY+K AW
Sbjct: 673 ITQGEKYNKVVDAW 686
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 227,916,173
Number of Sequences: 539616
Number of extensions: 9941530
Number of successful extensions: 20366
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 20349
Number of HSP's gapped (non-prelim): 57
length of query: 586
length of database: 191,569,459
effective HSP length: 123
effective length of query: 463
effective length of database: 125,196,691
effective search space: 57966067933
effective search space used: 57966067933
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)