BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 007896
         (585 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
           As A Framework For Inhibitor Design.
 pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
           As A Framework For Inhibitor Design.
 pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
           As A Framework For Inhibitor Design.
 pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
           As A Framework For Inhibitor Design
          Length = 965

 Score = 31.6 bits (70), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 46/216 (21%), Positives = 75/216 (34%), Gaps = 40/216 (18%)

Query: 254 VVLQPSSWRTGKTYSVETNIQPSWSISSIFGRNIPGKCVIAKSSNVYLQLDNGLVGELKN 313
           V+ Q + W     ++V   I P   + ++  R +   C I              +  +K 
Sbjct: 745 VLFQEALWHV-PEHAVVLEIAPHALLQAVLKRGLKPSCTI--------------IPLMKK 789

Query: 314 LERENAKYVANTFESEGFQSNHAFKISVTPDKVFEEVDNLHGKSTSVIYGFSVEKYSDSQ 373
             R+N ++        G    H   I   P+ +F  V+    + T +I        S   
Sbjct: 790 DHRDNLEFFL-----AGIGRLHLSGIDANPNALFPPVEFPAPRGTPLI--------SPLI 836

Query: 374 PFDLGLTWKIPVVWSCQQAPLHASRFLMGSGNERGAIAISLEPTESSEGLPTSHIIDGRC 433
            +D  L W +P           A  F  GSG+   AI      +ES +     H +DGR 
Sbjct: 837 KWDHSLAWDVPA----------AEDFPNGSGSPSAAIYNIDTSSESPDHYLVDHTLDGRV 886

Query: 434 ELRVDIFQVVPWYIKVYFHTLQVFVDKQPRAMADVV 469
                 +  + W  K     L + V++ P    DVV
Sbjct: 887 LFPATGYLSIVW--KTLARALGLGVEQLPVVFEDVV 920


>pdb|3H3I|A Chain A, Crystal Structure Of A Putative Lipid Binding Protein
           (Bt_2261) From Bacteroides Thetaiotaomicron Vpi-5482 At
           2.20 A Resolution
 pdb|3H3I|B Chain B, Crystal Structure Of A Putative Lipid Binding Protein
           (Bt_2261) From Bacteroides Thetaiotaomicron Vpi-5482 At
           2.20 A Resolution
 pdb|3H3I|C Chain C, Crystal Structure Of A Putative Lipid Binding Protein
           (Bt_2261) From Bacteroides Thetaiotaomicron Vpi-5482 At
           2.20 A Resolution
          Length = 150

 Score = 29.3 bits (64), Expect = 6.8,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 10/70 (14%)

Query: 318 NAKYVANTFESEGFQSNHAF--KISVTPDKVFEEVDNLHG--KSTSVIYGFSVEKYSDSQ 373
           N  Y A TF + GF  N  +  K+ +T  KV E+         + S++Y    +   D  
Sbjct: 74  NVNYAARTFSTTGFVDNVTYESKVKITDGKVLEKAATTPSGXPADSIVYXVQFDDDED-- 131

Query: 374 PFDLGLTWKI 383
               GLT+K+
Sbjct: 132 ----GLTYKV 137


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,064,417
Number of Sequences: 62578
Number of extensions: 710106
Number of successful extensions: 2129
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2129
Number of HSP's gapped (non-prelim): 3
length of query: 585
length of database: 14,973,337
effective HSP length: 104
effective length of query: 481
effective length of database: 8,465,225
effective search space: 4071773225
effective search space used: 4071773225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)