Query 007896
Match_columns 585
No_of_seqs 149 out of 222
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 16:47:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007896.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007896hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04113 Gpi16: Gpi16 subunit, 100.0 1E-136 3E-141 1134.3 47.5 458 38-573 17-502 (564)
2 KOG2407 GPI transamidase compl 100.0 3E-135 7E-140 1071.0 34.7 443 38-536 23-471 (575)
3 PF08487 VIT: Vault protein in 75.4 13 0.00029 33.6 7.6 83 408-506 21-117 (118)
4 PF13598 DUF4139: Domain of un 56.7 41 0.00089 35.2 7.9 71 406-506 242-312 (317)
5 TIGR02231 conserved hypothetic 40.4 1.2E+02 0.0027 34.3 9.0 71 407-506 443-515 (525)
6 PLN02373 soluble inorganic pyr 29.0 79 0.0017 31.5 4.4 43 481-527 20-69 (188)
7 PRK00642 inorganic pyrophospha 27.5 98 0.0021 31.2 4.8 43 481-527 20-69 (205)
8 smart00609 VIT Vault protein I 27.3 1.6E+02 0.0034 27.4 5.9 80 409-506 34-129 (130)
9 PRK02230 inorganic pyrophospha 18.4 1.6E+02 0.0034 29.4 4.1 36 485-523 4-46 (184)
10 PF06601 Orthopox_F6: Orthopox 17.7 51 0.0011 27.2 0.5 17 507-525 33-49 (72)
No 1
>PF04113 Gpi16: Gpi16 subunit, GPI transamidase component; InterPro: IPR007245 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex. Gpi16, Gpi8 and Gaa1 for a sub-complex of the GPI transamidase. GPI transamidase adds glycosylphosphatidylinositols (GPIs) to newly synthesized proteins. Gpi16 is an essential N-glycosylated transmembrane glycoprotein. Gpi16 is largely found on the lumenal side of the ER. It has a single C-terminal transmembrane domain and a small C-terminal, cytosolic extension with an ER retrieval motif [].; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=100.00 E-value=1.4e-136 Score=1134.29 Aligned_cols=458 Identities=43% Similarity=0.793 Sum_probs=406.6
Q ss_pred CCCCceeeeEEeeeCCCCcEEEEEEEEee-cCCCCCCCcccccccHHHHHHhHhcCeeEEEEEeeeeeccccccCCCCCC
Q 007896 38 GGGEEFSEELLLKPFPDRKVLAHFHFQSR-APHSSSHGRHHHLFPKAIAQLVKKFRVKEMELSFTQGRWRYEQWGGFDPL 116 (585)
Q Consensus 38 ~~~e~f~E~L~lkPLp~~~lla~F~F~~~-~~~~~~~~~h~~lFPr~l~qil~~~~v~ELhLsfTqGrW~~~~WG~p~p~ 116 (585)
..+|.|+|+|+|||||+|+++++|+|++. ...+.+..+||++|||+|+||+++++++||||+|||||||+++||+ +|.
T Consensus 17 ~~~~~f~E~L~l~PL~~~~ll~~F~F~~~~~~~~~~~~~h~~~fP~~i~~il~~~~~~elhl~fTqG~W~~~~WG~-~p~ 95 (564)
T PF04113_consen 17 SASESFTEELTLKPLPDGKLLASFNFTTESSSSNNDEYQHYTLFPRSIGQILQKYNVRELHLSFTQGRWDYESWGY-PPF 95 (564)
T ss_pred cccCceeeEEEEEECCCCCEEEEEEEEeccCccccccccccccCCHHHHHHHHhcCceEEEEEEeeccCcccccCC-CCc
Confidence 45689999999999999999999999994 3335578999999999999999999999999999999999999998 779
Q ss_pred CCCCCCCCceEEEEEEeCCc-hhHHHHHHHHHHHhhhhhhcccccccCCceeecCcccccCCC-----CeeeEecCCCcc
Q 007896 117 SSNNAKPPGVELWAVFDVPQ-SLVDVYWRNLTHTLSGLFCASINFLESSTTYSAPELTFKPSF-----GNLRYGTLPREA 190 (585)
Q Consensus 117 ~~~~~~~~GaELwA~f~~~~-~~vd~~W~~LtnaLSGLFCASLnfids~~t~~~P~~sf~p~~-----~~l~~a~LP~E~ 190 (585)
+|.+++|+||||||||+++. +++|++|++|||+|||||||||||||+++|++ |.++|+|.+ .+++||+||+|+
T Consensus 96 ~g~~~~~~G~elwA~~~~~~~~~~d~~W~~Lt~~LsGlfCASLn~id~~~t~~-P~~~~~~~~~~~~~~~~~~~~LP~E~ 174 (564)
T PF04113_consen 96 DGFKSGPTGAELWAWFEAPSDEEADERWKGLTNALSGLFCASLNFIDSTNTTS-PVFSFQPEGNGNNSLFLRYASLPREP 174 (564)
T ss_pred cccccCCcceEEEEEecCCcchHHHHHHHHHHHHHHHHhhhcccccCCCcEEC-cceeeccCCCCCCcceEEeeeCCCCC
Confidence 99999999999999999875 45999999999999999999999999999886 999999987 489999999999
Q ss_pred cccCChhhhhhhcCCCCCCccccccCCCcccccccceeeEEEEeecCCCCCCceeEEEEEEEEEEEcCCCccCCc-----
Q 007896 191 VCTENLTPWLKLLPCRDKAGLSALMDRPSIYRGFYHSQRLRLTSSESGSDEVDSGIGLDQTLTVVLQPSSWRTGK----- 265 (585)
Q Consensus 191 VCTENLTPwlKLLPCk~kaGLssLL~~~~lf~s~yhS~~i~v~~~c~~~~~~~~~~~L~qtl~~V~d~~~~~~~~----- 265 (585)
|||||||||+||||||+|+|||+|||||++||+.||||+|||++.|++..|. |+++|+|++++|+|+.++++++
T Consensus 175 vCTENLTP~~KLLPc~~~~GLasLL~~~~lf~s~yhS~~i~v~~~c~~~~~~-~~~~l~~~~~~V~d~~~~~~~~p~~~~ 253 (564)
T PF04113_consen 175 VCTENLTPWLKLLPCKGKAGLASLLDPHKLFDSNYHSLSIDVRTICDDSTCS-CSLELEQTLTVVLDPPRSLRRRPVPGD 253 (564)
T ss_pred cccccchhhHHhCCCCccCCHHHHcCchhhhcCCceeEEEEEEecCCCCCCc-eEEEEEeEEEEEECchhhcCCCCCccc
Confidence 9999999999999999999999999999999999999999999999998888 9999999999999999775544
Q ss_pred --------cc------cCCCCCCCCeeeecccCCCCCCCCcCcc-CceEEEEcCCCcccccchhhhcccccccccccccc
Q 007896 266 --------TY------SVETNIQPSWSISSIFGRNIPGKCVIAK-SSNVYLQLDNGLVGELKNLERENAKYVANTFESEG 330 (585)
Q Consensus 266 --------~~------~~~~~~~~~WSL~~lFgr~l~g~CplA~-sS~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (585)
+| ..++..+.+|||++||||+|+|+||+|+ +|+|||+++...
T Consensus 254 ~l~cd~~k~~~~~~c~pl~~~~~~dWSl~~lFGr~i~g~CplA~~sS~V~v~v~~~~----------------------- 310 (564)
T PF04113_consen 254 ELRCDTSKPYDAWQCFPLGDSSEQDWSLSSLFGRKIPGSCPLADESSKVYVDVPEEW----------------------- 310 (564)
T ss_pred ccccccCCCcccceeeecCCCCCCCeeHHHHhCCCCCCCCccCCCCceEEEecCCce-----------------------
Confidence 11 1244567899999999999999999999 999999986532
Q ss_pred cccCcceeEeeCCCcceeeeecccCCCcceEEEEEecCCCCCCccceeeeccc-ccccccCCCceEEEEEeecccccccc
Q 007896 331 FQSNHAFKISVTPDKVFEEVDNLHGKSTSVIYGFSVEKYSDSQPFDLGLTWKI-PVVWSCQQAPLHASRFLMGSGNERGA 409 (585)
Q Consensus 331 ~~~~~~f~ls~~p~~~~~~~~~~~~~~~~~~~~ydl~~~s~~~~~dl~~~~~~-p~~~~~~~ppl~a~R~ltG~Gq~rGg 409 (585)
++.+.+.... . ........+|++.+. .++||.+.|+. +..+..++|||+|+|+++||||+|||
T Consensus 311 -------~v~~~~~~~~--~----~~~~~~~~~y~l~~~---~~~dl~l~~~~~~~~~~~~~ppL~a~R~LtG~GQerGg 374 (564)
T PF04113_consen 311 -------SVSPEPGADE--Q----KTSSDNLNCYDLSES---SPFDLYLPWKNSSIVWSLPPPPLYASRSLTGYGQERGG 374 (564)
T ss_pred -------EEeccCCceE--E----eccCCcEEEEEcCCC---CCCCeEeeccCCCccccCCCCceEEEEEEcCCCcCCCe
Confidence 2222222111 1 123446789999865 48999999975 33445689999999999999999999
Q ss_pred EEEEEecCCCCCCCCCccccCCCceeEEEEEeeecceeEEeeeEEEEEEcCcccccccceeEEEeeCCCCCCCCceEEEE
Q 007896 410 IAISLEPTESSEGLPTSHIIDGRCELRVDIFQVVPWYIKVYFHTLQVFVDKQPRAMADVVDKIRVSPSKDKVSPGVMEMI 489 (585)
Q Consensus 410 l~~~i~N~~~~~~~~~~~~~~~~~~v~v~y~E~lPWy~r~YlHTL~v~~~g~~~~~~~~i~~~~y~Pa~dR~rP~~LEl~ 489 (585)
|++.|+|++ +.+++|+|||+||||||+|+|||++++++......+++++++|+||+||+||++||+.
T Consensus 375 l~~~i~N~~-------------~~~v~i~y~E~lPWf~r~YlhTL~v~~~~~~~~~~~~i~~~~y~Pa~dr~rp~~lE~~ 441 (564)
T PF04113_consen 375 LRTVITNPS-------------DTPVEIVYFESLPWFMRPYLHTLKVEVDGQPKPESDVIKSIYYSPAKDRKRPTHLELV 441 (564)
T ss_pred EEEEEECCC-------------CCceEEEEEEeccceeeeeEEEEEEEEecCccccccceeeEeeccccccCCCceEEEE
Confidence 999999997 4689999999999999999999999999777767789999999999999999999999
Q ss_pred EEecCCCeEEEEEEeccccccccccCCCCCCCCCccCCceeeecCcccccccccCcccCCCchhhhccccccceecccch
Q 007896 490 LKLPCGSKSAAFSLEFDKGFLHIDEYPPDANQGFDIPSALISFPSFNARMNFSEDEFLNNSPILSKFQHALQRHHHYMHS 569 (585)
Q Consensus 490 l~lPa~~St~~ls~~FdK~fL~~~EYPPDANrGFdIp~AvIt~~~~~~~~~~~~~~~~~~spl~~~~~~~~~~~~~yt~~ 569 (585)
++|||+ |+++|+|||||+||||+|||||||||||||||||++++.+ +..++ ++|||+
T Consensus 442 l~lP~~-st~~~s~~f~K~~L~~~EyPpDAnrGfdi~~avi~~~~~~---------------------~~~~~-~~~T~~ 498 (564)
T PF04113_consen 442 LTLPPN-STVTLSIDFDKAFLRYTEYPPDANRGFDIPSAVITVLDPN---------------------SSSPY-RIYTES 498 (564)
T ss_pred EEECCC-ceEEEEEEEEeeeechhhCCCCcccCcccCceEEEeecCC---------------------CCccE-EEeccc
Confidence 999998 9999999999999999999999999999999999997743 22245 899999
Q ss_pred hhhh
Q 007896 570 ICIV 573 (585)
Q Consensus 570 l~~~ 573 (585)
||+.
T Consensus 499 lLv~ 502 (564)
T PF04113_consen 499 LLVS 502 (564)
T ss_pred cccc
Confidence 9875
No 2
>KOG2407 consensus GPI transamidase complex, GPI16/PIG-T component, involved in glycosylphosphatidylinositol anchor biosynthesis [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-135 Score=1070.98 Aligned_cols=443 Identities=40% Similarity=0.733 Sum_probs=391.2
Q ss_pred CCCCceeeeEEeeeCCCCcEEEEEEEEeecCCC-CCCCcccccccHHHHHHhHhcCeeEEEEEeeeeeccccccCCCCCC
Q 007896 38 GGGEEFSEELLLKPFPDRKVLAHFHFQSRAPHS-SSHGRHHHLFPKAIAQLVKKFRVKEMELSFTQGRWRYEQWGGFDPL 116 (585)
Q Consensus 38 ~~~e~f~E~L~lkPLp~~~lla~F~F~~~~~~~-~~~~~h~~lFPr~l~qil~~~~v~ELhLsfTqGrW~~~~WG~p~p~ 116 (585)
...+.|+|+|+|||||+|+|+++|+|++.|+.+ .+..+||.+|||+|+|+|+++.||||||+||||||||+.||- +|.
T Consensus 23 ~~~e~fdE~LvlkPlps~dv~~~F~F~~r~~~~~~~~~~hy~lFPraI~~Ll~~~~vrelhl~fTqGrW~~e~WG~-~p~ 101 (575)
T KOG2407|consen 23 TLSENFDEALVLKPLPSNDVLVSFAFETRAEPNRKDESSHYLLFPRAIAELLSKYSVRELHLRFTQGRWNYEGWGL-PPF 101 (575)
T ss_pred CcccccCcceeeecCCCCceEEEEEEeecCCccccccccceeechHHHHHHHHHhhhheeEeeeecceecccccCC-CCc
Confidence 456889999999999999999999999999886 689999999999999999999999999999999999999994 233
Q ss_pred CCCCCCCCceEEEEEEeCC-chhHHHHHHHHHHHhhhhhhcccccccCCceeecCcccccCCC----CeeeEecCCCccc
Q 007896 117 SSNNAKPPGVELWAVFDVP-QSLVDVYWRNLTHTLSGLFCASINFLESSTTYSAPELTFKPSF----GNLRYGTLPREAV 191 (585)
Q Consensus 117 ~~~~~~~~GaELwA~f~~~-~~~vd~~W~~LtnaLSGLFCASLnfids~~t~~~P~~sf~p~~----~~l~~a~LP~E~V 191 (585)
.++|+||||||||+++ .++||++||+|+|+|||||||||||||+++|+. |..+++|.+ .++|||+||||+|
T Consensus 102 ---~s~psGaElWa~f~~~~~~~vd~~WK~Ltn~LSGllCaSLNfIdssns~~-p~~s~~~~g~~s~~~lryasLPrE~v 177 (575)
T KOG2407|consen 102 ---PSGPSGAELWAWFQADQQEDVDKSWKKLTNALSGLLCASLNFIDSSNSYA-PRVSYNGHGLFSSTFLRYASLPRETV 177 (575)
T ss_pred ---cCCCcceEEEEEecCcchhhHHHHHHHHHHHhhhheecceeeecccCccc-cccccCCCCCCCcceEEEeecCCCcc
Confidence 5999999999999987 677999999999999999999999999999996 999887643 3899999999999
Q ss_pred ccCChhhhhhhcCCCCCCccccccCCCcccccccceeeEEEEeecCCCCCCceeEEEEEEEEEEEcCCCccCCccccCCC
Q 007896 192 CTENLTPWLKLLPCRDKAGLSALMDRPSIYRGFYHSQRLRLTSSESGSDEVDSGIGLDQTLTVVLQPSSWRTGKTYSVET 271 (585)
Q Consensus 192 CTENLTPwlKLLPCk~kaGLssLL~~~~lf~s~yhS~~i~v~~~c~~~~~~~~~~~L~qtl~~V~d~~~~~~~~~~~~~~ 271 (585)
||||||||+||||||+|+||++|||+|++||+.|||++|||++.|++.++..|+++|+|++++|+|+... +
T Consensus 178 CTENLTPw~KLLPC~~k~GissLL~~~~lf~t~yHS~~l~v~~~c~~~e~~~c~~em~qti~vV~d~~~~---------~ 248 (575)
T KOG2407|consen 178 CTENLTPWKKLLPCKSKSGISSLLDSHKLFNTVYHSQSLDVRTVCSENEKDLCSVEMEQTISVVMDVSQT---------G 248 (575)
T ss_pred cccccchHHHhcCCCcccchHhhcCcccccccccccceeEEEeeccccccccceeEEeeeEEEEEehhHh---------c
Confidence 9999999999999999999999999999999999999999999999988999999999999999999521 2
Q ss_pred CCCCCeeeecccCCCCCCCCcCccCceEEEEcCCCcccccchhhhcccccccccccccccccCcceeEeeCCCcceeeee
Q 007896 272 NIQPSWSISSIFGRNIPGKCVIAKSSNVYLQLDNGLVGELKNLERENAKYVANTFESEGFQSNHAFKISVTPDKVFEEVD 351 (585)
Q Consensus 272 ~~~~~WSL~~lFgr~l~g~CplA~sS~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ls~~p~~~~~~~~ 351 (585)
..++||||+++|||++.+.||+|++|+||++.+..-.. ...+.|....+....-++.+.
T Consensus 249 ~~~~~wSL~~~f~r~l~~yC~la~sS~ihv~~s~~~e~-----------------~~~~~~~~~~~~~~~~~~~~~---- 307 (575)
T KOG2407|consen 249 QRKPDWSLRRLFGRPLGSYCPLAESSKIHVQLSQLSER-----------------TTGVPDLFTTVPTKRLGTSVT---- 307 (575)
T ss_pred ccCCCchHHHHhCCCCCCcccCCCcceeEEEeecccce-----------------eccCCCcccccceeecceeee----
Confidence 34578999999999999999999999999998742211 111112222232222222111
Q ss_pred cccCCCcceEEEEEecCCCCCCccceeeecccccccccCCCceEEEEEeeccccccccEEEEEecCCCCCCCCCccccCC
Q 007896 352 NLHGKSTSVIYGFSVEKYSDSQPFDLGLTWKIPVVWSCQQAPLHASRFLMGSGNERGAIAISLEPTESSEGLPTSHIIDG 431 (585)
Q Consensus 352 ~~~~~~~~~~~~ydl~~~s~~~~~dl~~~~~~p~~~~~~~ppl~a~R~ltG~Gq~rGgl~~~i~N~~~~~~~~~~~~~~~ 431 (585)
....+...|+...+.++.||+.+.|+.|.. ...+||||+|||+|+||+||+|++.|+|++
T Consensus 308 -----~~~f~~~~di~~~s~~~~fn~~l~w~~ps~--n~~~plhv~R~l~G~Gq~rG~l~~~i~N~~------------- 367 (575)
T KOG2407|consen 308 -----YEPFLDYDDIDKISMDESFNLQLAWKSPSD--NHAVPLHVSRSLSGFGQERGVLSILITNDE------------- 367 (575)
T ss_pred -----eehhhhcchhhhhccccccccccceecCCc--cccCceeeeeeccCCccccceEEEEEecCC-------------
Confidence 111344556666788899999999999873 467789999999999999999999999997
Q ss_pred CceeEEEEEeeecceeEEeeeEEEEEEcCcccccccceeEEEeeCCCCCCCCceEEEEEEecCCCeEEEEEEeccccccc
Q 007896 432 RCELRVDIFQVVPWYIKVYFHTLQVFVDKQPRAMADVVDKIRVSPSKDKVSPGVMEMILKLPCGSKSAAFSLEFDKGFLH 511 (585)
Q Consensus 432 ~~~v~v~y~E~lPWy~r~YlHTL~v~~~g~~~~~~~~i~~~~y~Pa~dR~rP~~LEl~l~lPa~~St~~ls~~FdK~fL~ 511 (585)
+++++|+|||++|||||+|+|||+|++|++..+..+.++++||.|++||++|++|||.|.|||+ +++.|+|+|||++||
T Consensus 368 ~~a~~i~~fe~iPWyvrvYlhtL~It~~~~~~~~~~~i~ki~y~p~~dr~~p~~lE~~~~lPa~-t~~~vsi~fdk~lL~ 446 (575)
T KOG2407|consen 368 YSASKIHYFEIIPWYVRVYLHTLQITSDGQRKNGVDRIEKIYYQPSKDREAPTLLEIKMKLPAN-TSCEVSIQFDKALLR 446 (575)
T ss_pred CCceeeEEEEecceEEEEEEEEEEEEEcCccCCCcchhHhhhcCchhhccCCceeEEEEEcCCC-ceEEEEEEchhhhhh
Confidence 6899999999999999999999999999988767789999999999999999999999999999 999999999999999
Q ss_pred cccCCCCCCCCCccCCceeeecCcc
Q 007896 512 IDEYPPDANQGFDIPSALISFPSFN 536 (585)
Q Consensus 512 ~~EYPPDANrGFdIp~AvIt~~~~~ 536 (585)
|+|||||||||||||||||++++.+
T Consensus 447 ~~EYPPDANhGf~Ip~Aiis~~~~~ 471 (575)
T KOG2407|consen 447 LDEYPPDANHGFYIPAAIISVQDPE 471 (575)
T ss_pred hhhCCCCCCCCcccCcceEEEECCC
Confidence 9999999999999999999998863
No 3
>PF08487 VIT: Vault protein inter-alpha-trypsin domain; InterPro: IPR013694 Inter-alpha-trypsin inhibitors (ITIs) consist of one light chain and a variable set of heavy chains. ITIs play a role in extracellular matrix (ECM) stabilisation and tumour metastasis as well as in plasma protease inhibition []. The vault protein inter-alpha-trypsin (VIT) domain described here is found to the N terminus of a von Willebrand factor type A domain (IPR002035 from INTERPRO) in ITI heavy chains (ITIHs) and their precursors.
Probab=75.45 E-value=13 Score=33.59 Aligned_cols=83 Identities=10% Similarity=0.148 Sum_probs=56.1
Q ss_pred ccEEEEEecCCCCCCCCCccccCCCceeEEEEEeeecceeEEeeeEEEEEEcCcccc----ccc----c---eeEEEeeC
Q 007896 408 GAIAISLEPTESSEGLPTSHIIDGRCELRVDIFQVVPWYIKVYFHTLQVFVDKQPRA----MAD----V---VDKIRVSP 476 (585)
Q Consensus 408 Ggl~~~i~N~~~~~~~~~~~~~~~~~~v~v~y~E~lPWy~r~YlHTL~v~~~g~~~~----~~~----~---i~~~~y~P 476 (585)
=.+.-.+.|++ +.++++.|.=.||- .-+++.+.+.++|+... .++ . ....-..|
T Consensus 21 t~v~q~f~N~~-------------~~~~E~~y~fpLp~--~A~i~~f~~~i~g~~i~g~v~ek~~A~~~y~~a~~~g~~a 85 (118)
T PF08487_consen 21 TTVTQTFENPS-------------SEPLEAVYSFPLPE--GAAISGFSMWIGGRTIEGEVKEKEEAKQEYEEAVAQGKSA 85 (118)
T ss_pred EEEEEEEECCC-------------CCcEEEEEEeECCC--CeEEEEEEEEECCEEEEEEEecHHHHHHHHHHHHHcCCCc
Confidence 34556788986 57899999999998 77888888888875421 000 0 01111333
Q ss_pred CC-CCCCCce--EEEEEEecCCCeEEEEEEecc
Q 007896 477 SK-DKVSPGV--MEMILKLPCGSKSAAFSLEFD 506 (585)
Q Consensus 477 a~-dR~rP~~--LEl~l~lPa~~St~~ls~~Fd 506 (585)
+. +..+|.. +.+.+.|||+ +++++++.|.
T Consensus 86 ~lle~~~~~~~~F~~~vni~p~-~~v~i~l~Y~ 117 (118)
T PF08487_consen 86 ALLEQSDPNVEVFTVSVNIPPN-EEVTIELTYV 117 (118)
T ss_pred hhhcccCCCCcEEEEEEEeCCC-CEEEEEEEEE
Confidence 33 3355666 8888899998 9999888764
No 4
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=56.69 E-value=41 Score=35.21 Aligned_cols=71 Identities=14% Similarity=0.247 Sum_probs=47.2
Q ss_pred ccccEEEEEecCCCCCCCCCccccCCCceeEEEEEeeecceeEEeeeEEEEEEcCcccccccceeEEEeeCCCCCCCCce
Q 007896 406 ERGAIAISLEPTESSEGLPTSHIIDGRCELRVDIFQVVPWYIKVYFHTLQVFVDKQPRAMADVVDKIRVSPSKDKVSPGV 485 (585)
Q Consensus 406 ~rGgl~~~i~N~~~~~~~~~~~~~~~~~~v~v~y~E~lPWy~r~YlHTL~v~~~g~~~~~~~~i~~~~y~Pa~dR~rP~~ 485 (585)
.+=+..+.|+|.+ +.+++|.+.|.||=-= =-.++|++.. ..+...+..-+.
T Consensus 242 ~~~~~~itv~N~~-------------~~~v~v~v~d~iPvs~---~~~I~V~~~~-------------~~~~~~~~~~g~ 292 (317)
T PF13598_consen 242 RTYEYTITVRNNK-------------DEPVTVTVEDQIPVSE---DEDIKVELLE-------------PPEPNEDEKDGI 292 (317)
T ss_pred EEEEEEEEEECCC-------------CCCEEEEEEeCCCCCC---CceEEEEEcC-------------CCCCcccCCCCE
Confidence 4456778999987 6889999999888300 0012222211 111122456799
Q ss_pred EEEEEEecCCCeEEEEEEecc
Q 007896 486 MEMILKLPCGSKSAAFSLEFD 506 (585)
Q Consensus 486 LEl~l~lPa~~St~~ls~~Fd 506 (585)
+++.++|||+ .+.+|.+.|+
T Consensus 293 ~~W~~~l~~g-~~~~l~~~y~ 312 (317)
T PF13598_consen 293 LEWKVTLPPG-ESRTLEFSYE 312 (317)
T ss_pred EEEEEEECCC-CEEEEEEEEE
Confidence 9999999998 8888888876
No 5
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=40.43 E-value=1.2e+02 Score=34.34 Aligned_cols=71 Identities=23% Similarity=0.281 Sum_probs=44.5
Q ss_pred cccEEEEEecCCCCCCCCCccccCCCceeEEEEEeeecceeEEeeeEEEEEEcCcccccccceeEEEeeCCCC--CCCCc
Q 007896 407 RGAIAISLEPTESSEGLPTSHIIDGRCELRVDIFQVVPWYIKVYFHTLQVFVDKQPRAMADVVDKIRVSPSKD--KVSPG 484 (585)
Q Consensus 407 rGgl~~~i~N~~~~~~~~~~~~~~~~~~v~v~y~E~lPWy~r~YlHTL~v~~~g~~~~~~~~i~~~~y~Pa~d--R~rP~ 484 (585)
+=+..+.|+|.. +.++.|.+.|.+|=- ==--++|.+..... |..+ +..=+
T Consensus 443 ~~~~~i~v~N~~-------------~~~v~v~v~d~~PvS---~d~~i~V~~~~~~~------------~~~~~~~~~~G 494 (525)
T TIGR02231 443 EYAYRITLKNLR-------------KEPERVQIEEQLPVS---ENEDIKVKLLSPTT------------PGYDEEDKKDG 494 (525)
T ss_pred EEEEEEEEEcCC-------------CCceEEEEEeeccCC---CCCeeEEEEecCCC------------ccccccccCCC
Confidence 445668899986 578999999999910 00012222211000 0011 12248
Q ss_pred eEEEEEEecCCCeEEEEEEecc
Q 007896 485 VMEMILKLPCGSKSAAFSLEFD 506 (585)
Q Consensus 485 ~LEl~l~lPa~~St~~ls~~Fd 506 (585)
.+++.++|||+ .+.+|+|.|+
T Consensus 495 ~~~W~l~L~pg-~~~~l~~~y~ 515 (525)
T TIGR02231 495 ILEWKLTLKPG-EKRDLKFKFK 515 (525)
T ss_pred eEEEEEEECCC-CeEEEEEEEE
Confidence 99999999998 9999998886
No 6
>PLN02373 soluble inorganic pyrophosphatase
Probab=28.98 E-value=79 Score=31.53 Aligned_cols=43 Identities=28% Similarity=0.733 Sum_probs=30.5
Q ss_pred CCCceEEEEEEecCCCeEEEEEEecccccccccc-------CCCCCCCCCccCC
Q 007896 481 VSPGVMEMILKLPCGSKSAAFSLEFDKGFLHIDE-------YPPDANQGFDIPS 527 (585)
Q Consensus 481 ~rP~~LEl~l~lPa~~St~~ls~~FdK~fL~~~E-------YPPDANrGFdIp~ 527 (585)
..|..+.++++||.. |.....|+=+..+++.+. || +|=|| ||.
T Consensus 20 ~~~~~v~vVIEIP~g-s~~KyE~dk~~g~i~~Dr~l~~~~~yP--~nYGf-IP~ 69 (188)
T PLN02373 20 GAPAIFNCVVEITKG-SKVKYELDKKTGLIKVDRVLYSSVVYP--HNYGF-IPR 69 (188)
T ss_pred CCCCEEEEEEEECCC-CCeeEEEccCCCCEEEeeecccCCcCC--ccccc-ccc
Confidence 468999999999998 887666655555666554 44 67777 443
No 7
>PRK00642 inorganic pyrophosphatase; Provisional
Probab=27.47 E-value=98 Score=31.24 Aligned_cols=43 Identities=26% Similarity=0.464 Sum_probs=32.1
Q ss_pred CCCceEEEEEEecCCCeEEEEEEeccccccccc-------cCCCCCCCCCccCC
Q 007896 481 VSPGVMEMILKLPCGSKSAAFSLEFDKGFLHID-------EYPPDANQGFDIPS 527 (585)
Q Consensus 481 ~rP~~LEl~l~lPa~~St~~ls~~FdK~fL~~~-------EYPPDANrGFdIp~ 527 (585)
..|..+.++++||.. |.....|+=+...++++ -|| +|=|| ||.
T Consensus 20 ~~~~~vn~VIEIP~g-s~~KyE~dk~~g~~~ldr~l~~~~~yP--~nYGf-IPq 69 (205)
T PRK00642 20 DAPESVCCYIEITPF-DTVKYELDKATGYLKVDRPQKFSNFCP--ALYGF-IPR 69 (205)
T ss_pred CCCCEEEEEEEECCC-CCeeEEEecCCCceEEeeecccCCcCC--cccCc-Ccc
Confidence 358999999999998 88776666666677763 566 77887 444
No 8
>smart00609 VIT Vault protein Inter-alpha-Trypsin domain.
Probab=27.32 E-value=1.6e+02 Score=27.44 Aligned_cols=80 Identities=8% Similarity=0.146 Sum_probs=45.1
Q ss_pred cEEEEEecCCCCCCCCCccccCCCceeEEEEEeeecceeEEeeeEEEEEEcCccccccccee-----EEEeeCCC-----
Q 007896 409 AIAISLEPTESSEGLPTSHIIDGRCELRVDIFQVVPWYIKVYFHTLQVFVDKQPRAMADVVD-----KIRVSPSK----- 478 (585)
Q Consensus 409 gl~~~i~N~~~~~~~~~~~~~~~~~~v~v~y~E~lPWy~r~YlHTL~v~~~g~~~~~~~~i~-----~~~y~Pa~----- 478 (585)
.+.-.+.|++ +...++.|+=.+|=- -.++-+.+.++|+... ..++ +..|.=|+
T Consensus 34 ~vtq~f~N~~-------------~~~~e~~~~~~lp~~--A~v~~~~~~i~~r~i~--g~vkeK~~Ar~~Ye~A~~~G~~ 96 (130)
T smart00609 34 VVTSRVVNRA-------------VPAQEVTFDVELPKT--AFISNFAMTIDGKTYV--GEIKEKEVAQKQYEKAVSQGKT 96 (130)
T ss_pred EEEEEEECCC-------------CCceEEEEEcCCCCC--cEEEeEEEEECCEEEE--EEEeeHHHHHHHHHHHHHcCCC
Confidence 4455788886 355666666556642 2345566666664321 0000 00011111
Q ss_pred ----CCCCC--ceEEEEEEecCCCeEEEEEEecc
Q 007896 479 ----DKVSP--GVMEMILKLPCGSKSAAFSLEFD 506 (585)
Q Consensus 479 ----dR~rP--~~LEl~l~lPa~~St~~ls~~Fd 506 (585)
...+| ..+.+.+.|||+ .+++|++.|.
T Consensus 97 a~L~eq~~~~~~~F~~~VNIppg-~~v~v~l~Y~ 129 (130)
T smart00609 97 AGLVRASGRSMEQFTVSVNVAPG-SKVTFELTYE 129 (130)
T ss_pred eEEEEecCCccCcEEEEEEeCCC-CEEEEEEEEE
Confidence 12456 788888899998 8988887764
No 9
>PRK02230 inorganic pyrophosphatase; Provisional
Probab=18.35 E-value=1.6e+02 Score=29.37 Aligned_cols=36 Identities=28% Similarity=0.678 Sum_probs=27.2
Q ss_pred eEEEEEEecCCCeEEEEEEecccccccccc-------CCCCCCCCC
Q 007896 485 VMEMILKLPCGSKSAAFSLEFDKGFLHIDE-------YPPDANQGF 523 (585)
Q Consensus 485 ~LEl~l~lPa~~St~~ls~~FdK~fL~~~E-------YPPDANrGF 523 (585)
.+.+++.||.. |.....||=+...++++- || +|=||
T Consensus 4 ~vnvvIEIP~g-s~~KyE~d~~~g~i~~DR~l~~~~~YP--~NYGf 46 (184)
T PRK02230 4 IIEVTIEIPKG-SNIKYEYDRKTNKIVVDRILRGDFVYP--ANYGF 46 (184)
T ss_pred EEEEEEEECCC-CCeeEEEecCCCCEEEEeecCCCCCCC--cCccc
Confidence 57899999988 887777777777777665 44 67776
No 10
>PF06601 Orthopox_F6: Orthopoxvirus F6 protein; InterPro: IPR009521 This family consists of several Orthopoxvirus F6L proteins the function of which is unknown.
Probab=17.70 E-value=51 Score=27.19 Aligned_cols=17 Identities=47% Similarity=0.827 Sum_probs=11.5
Q ss_pred ccccccccCCCCCCCCCcc
Q 007896 507 KGFLHIDEYPPDANQGFDI 525 (585)
Q Consensus 507 K~fL~~~EYPPDANrGFdI 525 (585)
-.+|..+|| -||||||-
T Consensus 33 ~~Ll~~d~~--~ANHGFDC 49 (72)
T PF06601_consen 33 DSLLDVDEV--TANHGFDC 49 (72)
T ss_pred hccCchhhh--hccCCccH
Confidence 345556666 48999984
Done!