Query 007896
Match_columns 585
No_of_seqs 149 out of 222
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 13:10:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007896.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007896hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qez_A Ppase, S-ppase, protein 32.7 24 0.00082 33.3 2.8 33 481-514 8-40 (173)
2 2bqx_A Inorganic pyrophosphata 20.1 52 0.0018 30.9 2.6 30 483-513 12-41 (173)
3 2uwj_G Type III export protein 20.0 14 0.00049 32.2 -1.2 30 184-215 58-87 (115)
4 2p58_C Putative type III secre 18.0 14 0.00049 32.3 -1.6 27 187-215 62-88 (116)
5 3d53_A Inorganic pyrophosphata 13.8 1E+02 0.0036 28.9 2.9 30 483-513 13-43 (173)
6 3q46_A TT-ippase; inorganic py 12.4 68 0.0023 30.3 1.2 32 481-513 12-43 (178)
7 2bpa_3 Protein (subunit of bac 11.5 66 0.0023 22.0 0.6 22 110-131 11-32 (37)
8 2x3c_A Toxic extracellular end 10.4 4.8E+02 0.017 26.7 7.0 73 406-506 36-110 (343)
9 2au7_A Inorganic pyrophosphata 8.2 1.8E+02 0.0061 27.3 2.4 31 482-513 11-42 (175)
10 4h4n_A Hypothetical protein BA 8.0 2.9E+02 0.01 21.3 3.1 15 488-503 9-23 (67)
No 1
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=32.69 E-value=24 Score=33.27 Aligned_cols=33 Identities=18% Similarity=0.607 Sum_probs=25.0
Q ss_pred CCCceEEEEEEecCCCeEEEEEEecccccccccc
Q 007896 481 VSPGVMEMILKLPCGSKSAAFSLEFDKGFLHIDE 514 (585)
Q Consensus 481 ~rP~~LEl~l~lPa~~St~~ls~~FdK~fL~~~E 514 (585)
..|..+.++++||.. |.+...++=++..|+++-
T Consensus 8 ~~p~~~nvvIEIP~g-s~~KyE~dk~~g~l~~DR 40 (173)
T 1qez_A 8 NAPDVVNVLVEIPQG-SNIKYEYDDEEGVIKVDR 40 (173)
T ss_dssp TTTTSEEEEEEECTT-CCEEEEEETTTTEEEEEE
T ss_pred CCCCeEEEEEEECCC-CCeEEEEecCCCCEEEEe
Confidence 478999999999998 886666665556666543
No 2
>2bqx_A Inorganic pyrophosphatase; hydrolase; 1.90A {Helicobacter pylori} PDB: 1ygz_A 2bqy_A
Probab=20.08 E-value=52 Score=30.93 Aligned_cols=30 Identities=13% Similarity=0.368 Sum_probs=23.9
Q ss_pred CceEEEEEEecCCCeEEEEEEeccccccccc
Q 007896 483 PGVMEMILKLPCGSKSAAFSLEFDKGFLHID 513 (585)
Q Consensus 483 P~~LEl~l~lPa~~St~~ls~~FdK~fL~~~ 513 (585)
|..+.++++||.. |.+...++-++..++++
T Consensus 12 p~~~nvvIEIP~g-s~~KyE~dk~~g~i~~D 41 (173)
T 2bqx_A 12 ADSLCVVIEISKH-SNIKYELDKESGALMVD 41 (173)
T ss_dssp TTEEEEEEEECTT-CSEEEEECTTTCCEEEE
T ss_pred CCeEEEEEEECCC-CCeEEEEecCCCCEEEe
Confidence 8999999999998 88666666666677665
No 3
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=19.98 E-value=14 Score=32.21 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=24.5
Q ss_pred ecCCCcccccCChhhhhhhcCCCCCCcccccc
Q 007896 184 GTLPREAVCTENLTPWLKLLPCRDKAGLSALM 215 (585)
Q Consensus 184 a~LP~E~VCTENLTPwlKLLPCk~kaGLssLL 215 (585)
|..-.|+.|+-+|-||+.| |-.|.|+.+=+
T Consensus 58 Al~l~~~~c~pdlepw~AL--ce~rlGl~s~l 87 (115)
T 2uwj_G 58 ALAFAHGNPWPALEPWFAL--CEWHLGLGAAL 87 (115)
T ss_dssp HHGGGTTCCCGGGHHHHHH--HHHHTTCHHHH
T ss_pred HHHhcCCCCCchHHHHHHH--HHHhcccHHHH
Confidence 3444689999999999998 88899998644
No 4
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=17.96 E-value=14 Score=32.26 Aligned_cols=27 Identities=30% Similarity=0.728 Sum_probs=22.8
Q ss_pred CCcccccCChhhhhhhcCCCCCCcccccc
Q 007896 187 PREAVCTENLTPWLKLLPCRDKAGLSALM 215 (585)
Q Consensus 187 P~E~VCTENLTPwlKLLPCk~kaGLssLL 215 (585)
-.|+.|+-+|-||+.| |-.|+|+.+=+
T Consensus 62 l~~~~c~pdlepw~AL--ce~rlGl~s~l 88 (116)
T 2p58_C 62 QGNKLAYPDLEPWLAL--CEYRLGLGSAL 88 (116)
T ss_dssp HHTTSCCGGGHHHHHH--HHHHHTCHHHH
T ss_pred hcCCCCCchHHHHHHH--HHHhcccHHHH
Confidence 3588999999999998 88899988644
No 5
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=13.75 E-value=1e+02 Score=28.90 Aligned_cols=30 Identities=17% Similarity=0.504 Sum_probs=24.6
Q ss_pred CceEEEEEEecCCCeE-EEEEEeccccccccc
Q 007896 483 PGVMEMILKLPCGSKS-AAFSLEFDKGFLHID 513 (585)
Q Consensus 483 P~~LEl~l~lPa~~St-~~ls~~FdK~fL~~~ 513 (585)
|..+.++++||.. |. +...++-+...|+++
T Consensus 13 p~~~nvvIEIP~g-s~p~KyE~dk~~g~i~~D 43 (173)
T 3d53_A 13 NNEINVIIEIPMN-SGPIKYEFDKESGALFVD 43 (173)
T ss_dssp TTCEEEEEEECTT-CCSEEEEECTTTCCEEEE
T ss_pred CCeEEEEEEeCCC-CCceeEEEecCCCCEEEe
Confidence 8999999999988 88 888887666666654
No 6
>3q46_A TT-ippase; inorganic pyrophosphatase, hydrolase; HET: EPE; 0.99A {Thermococcus thioreducens} SCOP: b.40.5.1 PDB: 3r6e_A* 3q3l_A 3i98_A 3q4w_A 3q9m_A* 3r5u_A 3r5v_A* 3q5v_A* 1ude_A 1twl_A
Probab=12.43 E-value=68 Score=30.30 Aligned_cols=32 Identities=25% Similarity=0.572 Sum_probs=23.4
Q ss_pred CCCceEEEEEEecCCCeEEEEEEeccccccccc
Q 007896 481 VSPGVMEMILKLPCGSKSAAFSLEFDKGFLHID 513 (585)
Q Consensus 481 ~rP~~LEl~l~lPa~~St~~ls~~FdK~fL~~~ 513 (585)
..|..+.++++||.. |.+...++-+...++++
T Consensus 12 ~~p~~~nvvIEIP~g-s~~KyE~dk~~g~i~~D 43 (178)
T 3q46_A 12 EVPEVVYALIEIPKG-SRNKYELDKATGLLKLD 43 (178)
T ss_dssp BTTTBCCCEEEECTT-CCEEEEECTTTSCEEEE
T ss_pred CCCCEEEEEEEECCC-CCeeEEECCCCCCEEEe
Confidence 478999999999988 87666665554555544
No 7
>2bpa_3 Protein (subunit of bacteriophage PHIX174); protein-DNA complex, single strand, icosahedral virus, virus/DNA complex; HET: DNA; 3.00A {Enterobacteria phage PHIX174} PDB: 1rb8_J*
Probab=11.50 E-value=66 Score=22.03 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=17.6
Q ss_pred cCCCCCCCCCCCCCCceEEEEE
Q 007896 110 WGGFDPLSSNNAKPPGVELWAV 131 (585)
Q Consensus 110 WG~p~p~~~~~~~~~GaELwA~ 131 (585)
=|.|.|.-|.+.+--|+.||-.
T Consensus 11 pgrpqplrgtkgkrkgarlwyv 32 (37)
T 2bpa_3 11 PGRPQPLRGTKGKRKGARLWYV 32 (37)
T ss_dssp CSCCCCBCCSCCSSCCSCCCCS
T ss_pred CCCCccccccccccccceEEEe
Confidence 4677888888888899999853
No 8
>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A
Probab=10.42 E-value=4.8e+02 Score=26.71 Aligned_cols=73 Identities=18% Similarity=0.197 Sum_probs=42.1
Q ss_pred ccccEEEEEecCCCCCCCCCccccCCCceeEEEEEeeecce-eEE-eeeEEEEEEcCcccccccceeEEEeeCCCCCCCC
Q 007896 406 ERGAIAISLEPTESSEGLPTSHIIDGRCELRVDIFQVVPWY-IKV-YFHTLQVFVDKQPRAMADVVDKIRVSPSKDKVSP 483 (585)
Q Consensus 406 ~rGgl~~~i~N~~~~~~~~~~~~~~~~~~v~v~y~E~lPWy-~r~-YlHTL~v~~~g~~~~~~~~i~~~~y~Pa~dR~rP 483 (585)
+--.|.++|+|+. +++++++ -|. +-. -...+.|.-+|+......+. .-|..|
T Consensus 36 ~~~~vk~tvtN~g-------------~~~~~lL-----k~~~lD~~~~~~~~V~~~G~~v~f~Gi~--------~~~~~~ 89 (343)
T 2x3c_A 36 DDVRVNLTLTNTG-------------DKPIRLL-----KWQLPGSDDAPLFLVERDGQPVSYEGAL--------IKRAAP 89 (343)
T ss_dssp SCCEEEEEEEECS-------------SSCEEEE-----GGGSCSSSCCCCEEEEETTEECCBCSCC--------CCCCCC
T ss_pred CCeEEEEEEEeCC-------------CCceEee-----ccCCCCcCccceEEEEeCCcccceeeEE--------EeccCC
Confidence 4467888999986 5666554 343 111 11334555555444322221 123444
Q ss_pred ceEEEEEEecCCCeEEEEEEecc
Q 007896 484 GVMEMILKLPCGSKSAAFSLEFD 506 (585)
Q Consensus 484 ~~LEl~l~lPa~~St~~ls~~Fd 506 (585)
.. |--++|+|. .+++.++|.-
T Consensus 90 ~~-d~f~~L~pG-~Sve~~~dla 110 (343)
T 2x3c_A 90 TD-KDFQLLKAG-QSLTVQAEVS 110 (343)
T ss_dssp CG-GGEEEECTT-CEEEEEEECT
T ss_pred Ch-hhcEEeCCC-CeEEEEEehh
Confidence 33 779999998 8888888874
No 9
>2au7_A Inorganic pyrophosphatase; hydrolase, mutant; 1.05A {Escherichia coli} PDB: 1i40_A 1i6t_A 1igp_A 1obw_A 2au6_A 2au8_A 2au9_A 2auu_A 1mjy_A 1faj_A 1ino_A 1ipw_A 1jfd_A 2eip_A 1mjz_A 1mjx_A 1mjw_A 3i4q_A*
Probab=8.24 E-value=1.8e+02 Score=27.35 Aligned_cols=31 Identities=16% Similarity=0.504 Sum_probs=24.3
Q ss_pred CCceEEEEEEecCCCeE-EEEEEeccccccccc
Q 007896 482 SPGVMEMILKLPCGSKS-AAFSLEFDKGFLHID 513 (585)
Q Consensus 482 rP~~LEl~l~lPa~~St-~~ls~~FdK~fL~~~ 513 (585)
.|..+.++++||.. |. +...++-+...++.+
T Consensus 11 ~p~~~nvvIEIP~g-s~p~KyE~dk~~g~i~~D 42 (175)
T 2au7_A 11 LPEDIYVVIEIPAN-ADPIKYEIDKESGALFVD 42 (175)
T ss_dssp TTTBEEEEEEECTT-CCSEEEEECTTTCCEEEE
T ss_pred CCCEEEEEEEecCC-CCceeEEEecCCCCEEEe
Confidence 57899999999988 88 887777665665554
No 10
>4h4n_A Hypothetical protein BA_2335; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.10A {Bacillus anthracis}
Probab=8.00 E-value=2.9e+02 Score=21.34 Aligned_cols=15 Identities=13% Similarity=0.352 Sum_probs=12.0
Q ss_pred EEEEecCCCeEEEEEE
Q 007896 488 MILKLPCGSKSAAFSL 503 (585)
Q Consensus 488 l~l~lPa~~St~~ls~ 503 (585)
+.+.+||| |.+.+++
T Consensus 9 i~fkvppn-sklkvtf 23 (67)
T 4h4n_A 9 IAFKVPPN-SKLKVTF 23 (67)
T ss_dssp EEEEECTT-EEEEEEE
T ss_pred eEEEcCCC-CeeEEEE
Confidence 57789998 8877775
Done!