Query 007896
Match_columns 585
No_of_seqs 149 out of 222
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 13:10:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007896.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007896hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2prda_ b.40.5.1 (A:) Inorgani 17.1 38 0.0028 29.5 3.2 33 481-514 11-43 (174)
2 d2bvca1 d.15.9.1 (A:5-104) Glu 16.4 35 0.0025 26.7 2.5 27 81-107 2-30 (100)
3 d2cora1 g.39.1.3 (A:43-73) Pin 11.6 9.4 0.00069 24.2 -1.9 9 203-211 23-31 (31)
4 d1qeza_ b.40.5.1 (A:) Inorgani 9.5 1.3E+02 0.0094 25.7 4.3 36 475-513 3-38 (170)
5 d1fyhb1 b.1.2.1 (B:12-109) Int 8.0 98 0.0071 22.5 2.5 28 492-522 1-28 (98)
6 d1znca_ b.74.1.1 (A:) Carbonic 7.6 4.7E+02 0.034 22.9 7.8 125 47-196 78-211 (262)
7 d1odha_ d.239.1.1 (A:) Mgcm1 { 7.3 50 0.0037 28.3 0.4 31 198-231 105-139 (158)
8 d1x9la_ b.2.10.1 (A:) Hypothet 7.1 2.7E+02 0.019 23.0 5.3 39 404-456 41-79 (149)
9 d1nxma_ b.82.1.1 (A:) dTDP-4-d 5.8 2.2E+02 0.016 24.5 4.1 55 467-530 67-123 (194)
10 d1f52a1 d.15.9.1 (A:1-100) Glu 5.5 1.6E+02 0.012 22.5 2.6 25 82-106 3-29 (100)
No 1
>d2prda_ b.40.5.1 (A:) Inorganic pyrophosphatase {Thermus thermophilus [TaxId: 274]}
Probab=17.06 E-value=38 Score=29.53 Aligned_cols=33 Identities=24% Similarity=0.596 Sum_probs=27.1
Q ss_pred CCCceEEEEEEecCCCeEEEEEEecccccccccc
Q 007896 481 VSPGVMEMILKLPCGSKSAAFSLEFDKGFLHIDE 514 (585)
Q Consensus 481 ~rP~~LEl~l~lPa~~St~~ls~~FdK~fL~~~E 514 (585)
..|..+.++++||.. |.....|+=+...++++.
T Consensus 11 ~~p~~vn~viEIP~g-s~~KyE~d~~~g~~~~dr 43 (174)
T d2prda_ 11 KAPEVVHMVIEVPRG-SGNKYEYDPDLGAIKLDR 43 (174)
T ss_dssp TTTTEEEEEEEECTT-CCEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEEEECCC-CCccEEEccCCCcEEEEe
Confidence 468999999999988 988888877777777663
No 2
>d2bvca1 d.15.9.1 (A:5-104) Glutamine synthetase, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=16.42 E-value=35 Score=26.66 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=23.7
Q ss_pred cHHHHHHhHhcCeeEEEEEee--eeeccc
Q 007896 81 PKAIAQLVKKFRVKEMELSFT--QGRWRY 107 (585)
Q Consensus 81 Pr~l~qil~~~~v~ELhLsfT--qGrW~~ 107 (585)
|..|.+.|++-+|+.+.+.|| .|+|+.
T Consensus 2 ~~ei~~~i~~~~I~~V~~~f~Dl~G~~r~ 30 (100)
T d2bvca1 2 PDDVFKLAKDEKVEYVDVRFCDLPGIMQH 30 (100)
T ss_dssp HHHHHHHHHHTTCSEEEEEEECSSSCEEE
T ss_pred HHHHHHHHHHCCCeEEEEEEECCCCCceE
Confidence 677899999999999999998 788873
No 3
>d2cora1 g.39.1.3 (A:43-73) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.57 E-value=9.4 Score=24.16 Aligned_cols=9 Identities=67% Similarity=1.453 Sum_probs=7.0
Q ss_pred cCCCCCCcc
Q 007896 203 LPCRDKAGL 211 (585)
Q Consensus 203 LPCk~kaGL 211 (585)
|||.+|.|+
T Consensus 23 LpChdKmGi 31 (31)
T d2cora1 23 LPCHDKMGV 31 (31)
T ss_dssp HHHHHTTSC
T ss_pred EecccccCC
Confidence 788888775
No 4
>d1qeza_ b.40.5.1 (A:) Inorganic pyrophosphatase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=9.48 E-value=1.3e+02 Score=25.73 Aligned_cols=36 Identities=25% Similarity=0.717 Sum_probs=27.8
Q ss_pred eCCCCCCCCceEEEEEEecCCCeEEEEEEeccccccccc
Q 007896 475 SPSKDKVSPGVMEMILKLPCGSKSAAFSLEFDKGFLHID 513 (585)
Q Consensus 475 ~Pa~dR~rP~~LEl~l~lPa~~St~~ls~~FdK~fL~~~ 513 (585)
.|+.+ .|..+.++++||.. |.....|+=+...++++
T Consensus 3 ~p~~~--~p~~vn~viEIP~g-s~~KyE~d~~~g~~~~d 38 (170)
T d1qeza_ 3 SPGKN--APDVVNVLVEIPQG-SNIKYEYDDEEGVIKVD 38 (170)
T ss_dssp CSCTT--TTTSEEEEEEECTT-CCEEEEEETTTTEEEEE
T ss_pred CCCCC--CCCeEEEEEEECCC-CCeeEEEccCCCceEEE
Confidence 45554 79999999999998 88777777666666664
No 5
>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.01 E-value=98 Score=22.54 Aligned_cols=28 Identities=7% Similarity=-0.103 Sum_probs=19.0
Q ss_pred ecCCCeEEEEEEeccccccccccCCCCCCCC
Q 007896 492 LPCGSKSAAFSLEFDKGFLHIDEYPPDANQG 522 (585)
Q Consensus 492 lPa~~St~~ls~~FdK~fL~~~EYPPDANrG 522 (585)
|||+ ..+++.-.-.+..|+|+. |+.+-|
T Consensus 1 vP~P-~nv~v~s~n~~~~L~W~p--P~~~g~ 28 (98)
T d1fyhb1 1 VPTP-TNVTIESYNMNPIVYWEY--QIMPQV 28 (98)
T ss_dssp CCCC-EEEEEECBSSCCEEEEEC--CCCSSC
T ss_pred CccC-CceEEEEeCCcEEEEECC--CCCCCC
Confidence 5777 777765544567899984 666666
No 6
>d1znca_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens), isozyme IV [TaxId: 9606]}
Probab=7.62 E-value=4.7e+02 Score=22.95 Aligned_cols=125 Identities=19% Similarity=0.255 Sum_probs=57.2
Q ss_pred EEeeeCCCCcEEEEEEEEeecCCCCCCCcc---cccccHHHHHHhHhcCeeEEEEEeeeeeccccccCCCCCCCCCCCCC
Q 007896 47 LLLKPFPDRKVLAHFHFQSRAPHSSSHGRH---HHLFPKAIAQLVKKFRVKEMELSFTQGRWRYEQWGGFDPLSSNNAKP 123 (585)
Q Consensus 47 L~lkPLp~~~lla~F~F~~~~~~~~~~~~h---~~lFPr~l~qil~~~~v~ELhLsfTqGrW~~~~WG~p~p~~~~~~~~ 123 (585)
+...+|+..+.+..|+|.--... .....| -.-|| -|||+-+.-.. |...-.......+
T Consensus 78 i~gg~l~~~Y~l~q~HfHwG~~~-~~gSEH~idG~~~~------------~E~HlVh~~~~------~~~~~~~~a~~~~ 138 (262)
T d1znca_ 78 ISGGGLPAPYQAKQLHLHWSDLP-YKGSEHSLDGEHFA------------MEMHIVHEKEK------GTSRNVKEAQDPE 138 (262)
T ss_dssp EEETTCSSCEEEEEEEEEECSST-TSCCSSEETTBCCS------------EEEEEEEEESS------CCCCCTTSCSSCT
T ss_pred EecCCCCcceEEEEEEEccCCCC-CCCccceeCCeecc------------ceEEEEEecCC------CccccHHHHhcCC
Confidence 56667777777777777632211 011222 12333 47777664322 1111111112455
Q ss_pred CceEEEEEEeCCchhHHHHHHHHHHHhhhhhhcccccccCCceeec-CcccccCCC----CeeeE-ecCCCcccccCCh
Q 007896 124 PGVELWAVFDVPQSLVDVYWRNLTHTLSGLFCASINFLESSTTYSA-PELTFKPSF----GNLRY-GTLPREAVCTENL 196 (585)
Q Consensus 124 ~GaELwA~f~~~~~~vd~~W~~LtnaLSGLFCASLnfids~~t~~~-P~~sf~p~~----~~l~~-a~LP~E~VCTENL 196 (585)
.|+-+-|.|-...+.....+..+...+..+ -..+...++.. ....+-|.. ++.+| |+| .-+-|||+.
T Consensus 139 ~~l~Vv~v~~~~~~~~n~~l~~i~~~~~~i-----~~~~~~~~~~~~~~~~llp~~~~~~~yy~Y~GSL-TtPPCtE~V 211 (262)
T d1znca_ 139 DEIAVLAFLVEAGTQVNEGFQPLVEALSNI-----PKPEMSTTMAESSLLDLLPKEEKLRHYFRYLGSL-TTPTCDEKV 211 (262)
T ss_dssp TSEEEEEEEEEEESSCCTTTHHHHHHGGGC-----CSTTCEEEEEEECGGGTSCCGGGGGCEEEEEECC-SSTTCCSCE
T ss_pred CceEEEEEEeccCCCCCHhHHHHHhhhhhc-----cCCCCceecCCCChHHhhccccccCceEEEeeec-CCCCCcCce
Confidence 676666666532222223455555555322 12222222210 011233321 34554 899 568999994
No 7
>d1odha_ d.239.1.1 (A:) Mgcm1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.31 E-value=50 Score=28.26 Aligned_cols=31 Identities=32% Similarity=0.540 Sum_probs=19.5
Q ss_pred hhhhhcCCCCCCccc----cccCCCcccccccceeeEE
Q 007896 198 PWLKLLPCRDKAGLS----ALMDRPSIYRGFYHSQRLR 231 (585)
Q Consensus 198 PwlKLLPCk~kaGLs----sLL~~~~lf~s~yhS~~i~ 231 (585)
-=|.++||+++.|.- --.++..|| |++-|.|
T Consensus 105 g~L~~~~Crgh~GypVthfWr~~~~~i~---fqakG~H 139 (158)
T d1odha_ 105 GPLKLIPCRGHGGFPVTNFWRHDGRFIF---FQSKGEH 139 (158)
T ss_dssp CBEEEECCCTBTTBCCEEEEEECSSBEE---EEEECCC
T ss_pred CceeEEeccCccCCcceEEEEEcCCEEE---Eeccccc
Confidence 335799999999973 223455555 5555444
No 8
>d1x9la_ b.2.10.1 (A:) Hypothetical protein DR1885 {Deinococcus radiodurans [TaxId: 1299]}
Probab=7.14 E-value=2.7e+02 Score=22.95 Aligned_cols=39 Identities=10% Similarity=-0.001 Sum_probs=30.5
Q ss_pred ccccccEEEEEecCCCCCCCCCccccCCCceeEEEEEeeecceeEEeeeEEEE
Q 007896 404 GNERGAIAISLEPTESSEGLPTSHIIDGRCELRVDIFQVVPWYIKVYFHTLQV 456 (585)
Q Consensus 404 Gq~rGgl~~~i~N~~~~~~~~~~~~~~~~~~v~v~y~E~lPWy~r~YlHTL~v 456 (585)
|+.-+..-..|.|+. +.++.++-.+ -|++-+.-+|+...
T Consensus 41 g~~~tA~Y~tI~N~s-------------~~~i~L~~v~-S~~a~~~elH~~~~ 79 (149)
T d1x9la_ 41 SIRDTAAYMTLTNKS-------------DQPIKLVGAA-TPLATSPMLMTTTH 79 (149)
T ss_dssp SCSCCCEEEECCCBS-------------CCEEEECCCB-CSSEEEEEEEEEST
T ss_pred CCccEEEEEEEEeCC-------------CCCeEEEEEE-cCCccceeEEEEEE
Confidence 456667777999986 5778887775 59999999999753
No 9
>d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]}
Probab=5.80 E-value=2.2e+02 Score=24.53 Aligned_cols=55 Identities=16% Similarity=0.211 Sum_probs=35.5
Q ss_pred cceeEEEeeCCCCCCCCceEEEEEEecCCCeEEEEEEeccc--cccccccCCCCCCCCCccCCcee
Q 007896 467 DVVDKIRVSPSKDKVSPGVMEMILKLPCGSKSAAFSLEFDK--GFLHIDEYPPDANQGFDIPSALI 530 (585)
Q Consensus 467 ~~i~~~~y~Pa~dR~rP~~LEl~l~lPa~~St~~ls~~FdK--~fL~~~EYPPDANrGFdIp~AvI 530 (585)
.+++-+||.|. . .+...+... ....+-+|.+| .|.+|..+--|+++...||+++.
T Consensus 67 gvlRGlH~q~~------~--k~v~~~~~G-~i~~V~vD~R~S~t~g~~~~~~l~~~~~i~IP~G~a 123 (194)
T d1nxma_ 67 NVLRGLHAEPW------D--KYISVADGG-KVLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVA 123 (194)
T ss_dssp TBEEEEEECSS------C--EEEEECSSC-CEEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEE
T ss_pred eEEEEEEeccc------h--hhhhhcccc-ceeEEEEEeccccccceeeeeeeccCceEEEeccee
Confidence 46677788752 1 234444444 66666777764 37777777777777788888765
No 10
>d1f52a1 d.15.9.1 (A:1-100) Glutamine synthetase, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=5.50 E-value=1.6e+02 Score=22.47 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=20.0
Q ss_pred HHHHHHhHhcCeeEEEEEee--eeecc
Q 007896 82 KAIAQLVKKFRVKEMELSFT--QGRWR 106 (585)
Q Consensus 82 r~l~qil~~~~v~ELhLsfT--qGrW~ 106 (585)
..|.+.|++-+|+.+++.|| +|+|+
T Consensus 3 e~i~~~i~~~~I~~V~~~F~D~~G~~~ 29 (100)
T d1f52a1 3 EHVLTMLNEHEVKFVDLRFTDTKGKEQ 29 (100)
T ss_dssp HHHHHHHHHTTCCEEEEEEECTTSCEE
T ss_pred HHHHHHHHHCCCeEEEEEEECCCCcee
Confidence 35778889999999999998 45554
Done!