BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007897
(585 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From
Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion
Channel
Length = 137
Score = 92.4 bits (228), Expect = 5e-19, Method: Composition-based stats.
Identities = 43/123 (34%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 391 IKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS-- 448
+++VPLF C+R++P ++++ ++REGDPV M+FI+RGR++ +
Sbjct: 8 VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67
Query: 449 KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITD 508
G S+L+ G F GDELL+W L LP+S+ T + +EAF L A L+++
Sbjct: 68 SGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVAS 127
Query: 509 HFR 511
FR
Sbjct: 128 QFR 130
>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal
Region Of Spih Channels
Length = 198
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 12/145 (8%)
Query: 366 DEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIR 425
DE + +++ E +R+ + Y C DL+ VP F + V+ + +I+
Sbjct: 48 DERHIFREVSESIRQDVANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQ 107
Query: 426 EGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSA 485
EG RM FI +G + +S G++ATS L G + G+ L RR A
Sbjct: 108 EGTFGDRMFFIQQGIVDII--MSDGVIATS-LSDGSYFGEICLLTRERRV---------A 155
Query: 486 TFVCMESIEAFGLDAKNLRYITDHF 510
+ C F L ++ + D F
Sbjct: 156 SVKCETYCTLFSLSVQHFNQVLDEF 180
>pdb|3OTF|A Chain A, Structural Basis For The Camp-Dependent Gating In Human
Hcn4 Channel
Length = 220
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 9/146 (6%)
Query: 322 AKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGE--DEMELIKDLPEGLR 379
+ +R+ Q + + +E +M Y R+ G+ DE ++ +L E LR
Sbjct: 3 SSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQ---GKMFDEESILGELSEPLR 59
Query: 380 RGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRG 439
I + C L+ +PLF ++R V+ + IIREG +M FI G
Sbjct: 60 EEIINFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG 119
Query: 440 RIKRCQSLSKGMVATSVLEPGGFLGD 465
+ L+KG T L G + G+
Sbjct: 120 VV---SVLTKGNKETK-LADGSYFGE 141
>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus
Carrying The S672r Mutation
Length = 205
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 9/146 (6%)
Query: 322 AKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGE--DEMELIKDLPEGLR 379
+ +R+ Q + + +E +M Y R+ G+ DE ++ +L E LR
Sbjct: 3 SSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQ---GKMFDEESILGELSEPLR 59
Query: 380 RGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRG 439
I + C L+ +PLF ++R V+ + IIREG +M FI G
Sbjct: 60 EEIINFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG 119
Query: 440 RIKRCQSLSKGMVATSVLEPGGFLGD 465
+ L+KG T L G + G+
Sbjct: 120 VV---SVLTKGNKETK-LADGSYFGE 141
>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKN|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2
21 SPACE Group
pdb|3UKT|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKT|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P1 21 1
SPACE Group
pdb|3UKV|B Chain B, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|C Chain C, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
pdb|3UKV|D Chain D, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN P 1 21
1 SPACE Group, Crystallized In The Presence Of Camp
Length = 212
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 5/111 (4%)
Query: 359 WATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYS 418
W+ G D EL+KD P+ LR I +L +L+ ++PLF ++ +
Sbjct: 46 WSVNNGIDVSELLKDFPDELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCA 104
Query: 419 KDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLS 469
E +IR+GD + + F+ G ++ + K ++L G +G + L+
Sbjct: 105 PGEFLIRQGDALQAIYFVCSGSME----VLKDNTVLAILGKGDLIGSDSLT 151
>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U0Z|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 9/146 (6%)
Query: 322 AKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGE--DEMELIKDLPEGLR 379
+ +R+ Q + + +E +M Y R+ G+ DE ++ +L + LR
Sbjct: 9 SSRRQYQEKYKQVEQYMSFHKLPADMRQKIHDYYEHRYQ---GKIFDEENILSELNDPLR 65
Query: 380 RGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRG 439
I + C L+ +PLF ++R V+ + IIREG +M FI G
Sbjct: 66 EEIVNFNCRKLVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHG 125
Query: 440 RIKRCQSLSKGMVATSVLEPGGFLGD 465
SK M T G + G+
Sbjct: 126 VAGVITKSSKEMKLTD----GSYFGE 147
>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
pdb|3U11|B Chain B, Tetramerization Dynamics Of The C-Terminus Underlies
Isoform-Specific Camp-Gating In Hcn Channels
Length = 210
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 9/146 (6%)
Query: 322 AKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGE--DEMELIKDLPEGLR 379
+ +R+ Q + + +E +M Y R+ G+ DE ++ +L E LR
Sbjct: 9 SSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQ---GKMFDEESILGELSEPLR 65
Query: 380 RGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRG 439
I + L+ +PLF ++R V+ + IIREG +M FI G
Sbjct: 66 EEIINFNXRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHG 125
Query: 440 RIKRCQSLSKGMVATSVLEPGGFLGD 465
+ L+KG T + + G + G+
Sbjct: 126 VV---SVLTKGNKETKLAD-GSYFGE 147
>pdb|2GRE|A Chain A, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|B Chain B, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|C Chain C, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|D Chain D, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|E Chain E, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|F Chain F, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|G Chain G, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|H Chain H, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|I Chain I, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|J Chain J, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|K Chain K, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|L Chain L, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|M Chain M, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|N Chain N, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|O Chain O, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|P Chain P, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
Length = 349
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 207 EEVCYQFLVPSGAIGNTCGGNSTTTVRKSLCL-DVNGPFHYGIYQWALPVISSNSVAVKI 265
EE V GA+G+ G ++ S+C D +GP+HY + + + + +N + K+
Sbjct: 232 EETVEYLAVDXGALGD---GQASDEYTVSICAKDSSGPYHYALRKHLVELAKTNHIEYKV 288
Query: 266 -LYPIF 270
+YP +
Sbjct: 289 DIYPYY 294
>pdb|4GZO|A Chain A, N2 Neuraminidase Of ATANZANIA2052010 H3N2 IN COMPLEX WITH
HEPES
pdb|4GZP|A Chain A, N2 Neuraminidase Of ATANZANIA2052010 H3N2 IN COMPLEX WITH
Oseltamivir Carboxylate
pdb|4GZQ|A Chain A, N2 Neuraminidase Of ATANZANIA2052010 H3N2 IN COMPLEX WITH
SIALIC Acid
Length = 393
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 202 YLSCSEEVCYQFLVPSGAIGNTCGGNST----TTVRKSLCLDVNGPFHYGIYQ 250
Y+SC + CYQF + G N N+T T R L ++ PFH G Q
Sbjct: 45 YVSCDPDKCYQFALGQGTTLNNVHSNNTVRDRTPYRTLLMNELGVPFHLGTKQ 97
>pdb|4GZS|A Chain A, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Hepes
pdb|4GZS|B Chain B, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Hepes
pdb|4GZS|C Chain C, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Hepes
pdb|4GZS|D Chain D, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Hepes
pdb|4GZT|A Chain A, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Oseltamivir Carboxylate
pdb|4GZT|B Chain B, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Oseltamivir Carboxylate
pdb|4GZT|C Chain C, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Oseltamivir Carboxylate
pdb|4GZT|D Chain D, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Oseltamivir Carboxylate
pdb|4GZW|A Chain A, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Avian Sialic Acid Receptor
pdb|4GZW|B Chain B, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Avian Sialic Acid Receptor
pdb|4GZW|C Chain C, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Avian Sialic Acid Receptor
pdb|4GZW|D Chain D, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Avian Sialic Acid Receptor
pdb|4GZX|A Chain A, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Human Sialic Acid Receptor
pdb|4GZX|B Chain B, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Human Sialic Acid Receptor
pdb|4GZX|C Chain C, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Human Sialic Acid Receptor
pdb|4GZX|D Chain D, N2 Neuraminidase D151g Mutant Of ATANZANIA2052010 H3N2 IN
COMPLEX With Human Sialic Acid Receptor
Length = 393
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 202 YLSCSEEVCYQFLVPSGAIGNTCGGNST----TTVRKSLCLDVNGPFHYGIYQ 250
Y+SC + CYQF + G N N+T T R L ++ PFH G Q
Sbjct: 45 YVSCDPDKCYQFALGQGTTLNNVHSNNTVRGRTPYRTLLMNELGVPFHLGTKQ 97
>pdb|2AEP|A Chain A, An Epidemiologically Significant Epitope Of A 1998
Influenza Virus Neuraminidase Forms A Highly Hydrated
Interface In The Na-Antibody Complex.
pdb|2AEQ|A Chain A, An Epidemiologically Significant Epitope Of A 1998
Influenza Virus Neuraminidase Forms A Highly Hydrated
Interface In The Na-Antibody Complex
Length = 395
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 202 YLSCSEEVCYQFLVPSGAIGNTCGGNST----TTVRKSLCLDVNGPFHYGIYQ 250
Y+SC + CYQF + G N N T T R L ++ PFH G Q
Sbjct: 47 YVSCDPDKCYQFALGQGTTLNNRHSNDTVHDRTPYRTLLMNELGVPFHLGTKQ 99
>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of
Pka
Length = 246
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 383 KRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIK 442
KR + DL+K +P+ D + +Y E IIREGD I G +
Sbjct: 119 KRLMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVD 178
Query: 443 RCQSLSKGMVATSVLEPGGFLGD 465
+ KG + L+ + G+
Sbjct: 179 VSK---KGQGVINKLKDHDYFGE 198
>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
pdb|1NE6|A Chain A, Crystal Structure Of Sp-Camp Binding R1a Subunit Of Camp-
Dependent Protein Kinase
Length = 283
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 383 KRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIK 442
KR + + + KV + D + P+ + +KI+ +G+P I+ G
Sbjct: 147 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAA 206
Query: 443 RCQ--SLSKGMVATSVLEPGGFLGDELLSWCLRRP 475
Q S ++ V L P + G+ ++ + RP
Sbjct: 207 VLQRRSENEEFVEVGRLGPSDYFGE--IALLMNRP 239
>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory
Subunit Of Protein Kinase A That Represents The
Inhibited State
Length = 291
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 383 KRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIK 442
KR + + + KV + D + P+ + +KI+ +G+P I+ G
Sbjct: 151 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAA 210
Query: 443 RCQ--SLSKGMVATSVLEPGGFLGDELLSWCLRRP 475
Q S ++ V L P + G+ ++ + RP
Sbjct: 211 VLQRRSENEEFVEVGRLGPSDYFGE--IALLMNRP 243
>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RL3|B Chain B, Crystal Structure Of Camp-free R1a Subunit Of Pka
pdb|1RGS|A Chain A, Regulatory Subunit Of Camp Dependent Protein Kinase
Length = 288
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 383 KRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIK 442
KR + + + KV + D + P+ + +KI+ +G+P I+ G
Sbjct: 149 KRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAA 208
Query: 443 RCQ--SLSKGMVATSVLEPGGFLGDELLSWCLRRP 475
Q S ++ V L P + G+ ++ + RP
Sbjct: 209 VLQRRSENEEFVEVGRLGPSDYFGE--IALLMNRP 241
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 16/148 (10%)
Query: 383 KRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIK 442
KR + + + KV + D + P+ + EKI+ +G+P I G
Sbjct: 242 KRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTAS 301
Query: 443 RCQ--SLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDA 500
Q S ++ V L P + G+ ++ L RP +AT V ++ LD
Sbjct: 302 VLQRRSPNEEYVEVGRLGPSDYFGE--IALLLNRP-------RAATVVARGPLKCVKLDR 352
Query: 501 KNLRYITDHFRYKFANERLKRTARYYSS 528
+ +E LKR + Y+S
Sbjct: 353 PRFERVLGP-----CSEILKRNIQRYNS 375
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 242 GPFHYGIYQWALPVISSNSVAVKILYPIFWGLMTLSTFG-NDLEPTSHWLEVMFSICIVL 300
G F I ++ P NS + ++W ++T +T G D+ P + +V+ I ++L
Sbjct: 159 GAFAIYIVEYPDP----NSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVI-GIAVML 213
Query: 301 SGLMLFTLLIGNIQVFLHAVMAKKRK 326
+G+ TLLIG + ++ + +
Sbjct: 214 TGISALTLLIGTVSNMFQKILVGEPE 239
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.141 0.464
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,334,298
Number of Sequences: 62578
Number of extensions: 623931
Number of successful extensions: 1358
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1349
Number of HSP's gapped (non-prelim): 23
length of query: 585
length of database: 14,973,337
effective HSP length: 104
effective length of query: 481
effective length of database: 8,465,225
effective search space: 4071773225
effective search space used: 4071773225
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (25.4 bits)