Query 007897
Match_columns 585
No_of_seqs 371 out of 2913
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 16:48:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 7E-100 1E-104 819.6 41.5 488 2-556 91-578 (727)
2 KOG0500 Cyclic nucleotide-gate 100.0 8E-68 1.7E-72 529.8 36.4 403 25-512 23-425 (536)
3 PLN03192 Voltage-dependent pot 100.0 1.8E-64 4E-69 578.6 40.1 409 29-524 90-499 (823)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 3.6E-62 7.7E-67 493.1 19.2 426 29-525 247-672 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 3.7E-55 8E-60 443.9 23.2 395 30-526 260-655 (815)
6 PRK09392 ftrB transcriptional 99.6 4E-14 8.8E-19 139.3 16.6 151 388-548 6-156 (236)
7 PRK11753 DNA-binding transcrip 99.5 4.2E-13 9E-18 129.7 18.2 118 397-523 5-123 (211)
8 cd00038 CAP_ED effector domain 99.5 8.4E-13 1.8E-17 113.3 13.0 107 396-511 1-108 (115)
9 PRK10402 DNA-binding transcrip 99.4 3.1E-12 6.7E-17 125.0 14.2 110 404-523 23-133 (226)
10 KOG3713 Voltage-gated K+ chann 99.4 5.2E-13 1.1E-17 137.0 8.0 60 264-323 377-436 (477)
11 PF00027 cNMP_binding: Cyclic 99.4 1.7E-12 3.8E-17 107.0 9.7 88 415-511 2-90 (91)
12 smart00100 cNMP Cyclic nucleot 99.4 9.8E-12 2.1E-16 107.3 14.9 110 396-512 1-111 (120)
13 PRK11161 fumarate/nitrate redu 99.4 1.1E-11 2.3E-16 122.0 16.8 122 391-523 15-138 (235)
14 COG0664 Crp cAMP-binding prote 99.4 9.2E-12 2E-16 119.9 16.1 126 392-527 3-129 (214)
15 PF00520 Ion_trans: Ion transp 99.4 1.8E-12 4E-17 123.2 9.1 194 35-313 1-200 (200)
16 KOG0614 cGMP-dependent protein 99.3 1.9E-12 4.1E-17 132.4 8.1 117 386-511 269-388 (732)
17 PLN02868 acyl-CoA thioesterase 99.3 4.2E-11 9.2E-16 127.4 13.3 113 388-511 7-119 (413)
18 PRK09391 fixK transcriptional 99.3 8.9E-11 1.9E-15 115.0 14.4 106 407-525 33-139 (230)
19 KOG1113 cAMP-dependent protein 99.3 1E-11 2.2E-16 122.0 7.5 111 388-511 121-231 (368)
20 KOG0614 cGMP-dependent protein 99.2 8.5E-12 1.8E-16 127.7 6.9 125 374-511 139-263 (732)
21 TIGR03697 NtcA_cyano global ni 99.2 2E-10 4.4E-15 109.2 14.2 97 420-525 1-99 (193)
22 COG2905 Predicted signal-trans 99.2 4.4E-10 9.6E-15 117.0 14.5 119 388-519 6-124 (610)
23 PRK13918 CRP/FNR family transc 99.2 4.7E-10 1E-14 107.6 13.9 83 411-503 5-90 (202)
24 KOG1545 Voltage-gated shaker-l 99.0 1.9E-11 4E-16 119.6 -1.7 47 265-311 394-440 (507)
25 PF07885 Ion_trans_2: Ion chan 99.0 3E-09 6.5E-14 85.5 10.0 55 264-318 24-78 (79)
26 KOG1113 cAMP-dependent protein 99.0 6.6E-10 1.4E-14 109.4 6.5 117 382-510 233-349 (368)
27 KOG1419 Voltage-gated K+ chann 98.9 3E-08 6.5E-13 102.7 15.3 88 262-356 267-354 (654)
28 KOG1420 Ca2+-activated K+ chan 98.5 2.7E-07 5.8E-12 95.6 8.9 61 263-323 287-347 (1103)
29 KOG4390 Voltage-gated A-type K 98.5 3.1E-09 6.7E-14 105.0 -6.2 185 29-319 225-415 (632)
30 KOG2968 Predicted esterase of 98.2 2.2E-06 4.7E-11 93.7 6.2 114 403-526 499-613 (1158)
31 PRK10537 voltage-gated potassi 98.1 3.1E-05 6.8E-10 81.3 11.7 54 264-317 168-221 (393)
32 PF01007 IRK: Inward rectifier 97.8 0.00028 6.1E-09 72.3 12.4 54 264-317 84-139 (336)
33 KOG3684 Ca2+-activated K+ chan 97.4 0.0029 6.4E-08 65.2 13.9 89 263-359 286-374 (489)
34 PRK11832 putative DNA-binding 97.4 0.0062 1.4E-07 57.5 14.8 96 404-511 14-110 (207)
35 KOG2968 Predicted esterase of 97.4 0.0012 2.6E-08 72.9 11.0 103 408-513 111-215 (1158)
36 KOG1418 Tandem pore domain K+ 97.1 0.0013 2.7E-08 70.4 7.6 56 265-320 116-171 (433)
37 PF04831 Popeye: Popeye protei 97.0 0.051 1.1E-06 48.2 15.3 105 399-511 14-120 (153)
38 KOG3827 Inward rectifier K+ ch 96.4 0.013 2.8E-07 59.4 8.4 56 265-320 113-170 (400)
39 KOG3542 cAMP-regulated guanine 96.3 0.011 2.3E-07 63.5 7.7 112 387-511 279-392 (1283)
40 KOG4404 Tandem pore domain K+ 96.1 0.043 9.3E-07 54.4 10.0 57 264-320 186-250 (350)
41 KOG4404 Tandem pore domain K+ 94.2 0.014 3.1E-07 57.7 0.2 51 264-314 80-130 (350)
42 KOG3542 cAMP-regulated guanine 94.0 0.067 1.5E-06 57.6 4.8 104 375-499 23-126 (1283)
43 KOG3193 K+ channel subunit [In 91.4 0.23 5E-06 52.4 4.4 34 266-299 219-252 (1087)
44 PLN03223 Polycystin cation cha 91.2 7.8 0.00017 46.2 16.4 102 290-395 1395-1517(1634)
45 KOG1418 Tandem pore domain K+ 90.7 0.053 1.2E-06 57.8 -1.1 47 264-310 242-296 (433)
46 COG4709 Predicted membrane pro 83.7 7.3 0.00016 36.0 8.5 75 329-405 5-83 (195)
47 PF08006 DUF1700: Protein of u 81.8 8.7 0.00019 35.8 8.8 56 329-386 5-64 (181)
48 PF07883 Cupin_2: Cupin domain 77.7 8.3 0.00018 29.2 6.1 45 415-464 3-48 (71)
49 KOG2302 T-type voltage-gated C 76.8 22 0.00048 41.1 10.9 42 33-92 1158-1200(1956)
50 KOG3676 Ca2+-permeable cation 72.6 1.1E+02 0.0024 34.8 15.0 74 277-351 601-681 (782)
51 PF14377 DUF4414: Domain of un 70.5 8 0.00017 32.8 4.6 45 341-385 51-105 (108)
52 PF13314 DUF4083: Domain of un 64.8 26 0.00057 25.7 5.5 45 292-339 6-56 (58)
53 PF05899 Cupin_3: Protein of u 64.4 11 0.00023 29.5 3.9 31 431-465 26-56 (74)
54 PRK13290 ectC L-ectoine syntha 61.8 48 0.0011 28.8 7.9 68 413-498 38-106 (125)
55 smart00835 Cupin_1 Cupin. This 59.3 38 0.00082 30.2 7.2 55 412-466 32-88 (146)
56 TIGR03037 anthran_nbaC 3-hydro 58.2 41 0.00089 30.6 7.0 74 413-502 30-105 (159)
57 COG3718 IolB Uncharacterized e 54.0 51 0.0011 31.7 7.0 74 412-502 31-112 (270)
58 PLN03192 Voltage-dependent pot 53.3 4.4E+02 0.0095 31.0 19.3 43 341-388 357-399 (823)
59 KOG2301 Voltage-gated Ca2+ cha 52.6 1.9E+02 0.0042 36.3 13.4 50 28-99 470-519 (1592)
60 PF02037 SAP: SAP domain; Int 46.6 42 0.00092 21.9 3.9 26 330-355 5-35 (35)
61 KOG2378 cAMP-regulated guanine 44.6 22 0.00047 37.5 3.3 43 459-510 1-44 (573)
62 COG0662 {ManC} Mannose-6-phosp 43.8 66 0.0014 27.9 6.0 48 411-463 37-85 (127)
63 PRK04190 glucose-6-phosphate i 43.8 1.1E+02 0.0023 28.9 7.7 52 413-464 71-131 (191)
64 TIGR03404 bicupin_oxalic bicup 43.7 62 0.0013 33.9 6.7 53 413-465 70-122 (367)
65 KOG3609 Receptor-activated Ca2 42.7 2.7E+02 0.0058 32.1 11.6 55 266-320 555-614 (822)
66 PRK13264 3-hydroxyanthranilate 42.2 97 0.0021 28.7 6.8 62 428-504 52-113 (177)
67 PF14377 DUF4414: Domain of un 41.6 66 0.0014 27.1 5.4 50 342-391 8-70 (108)
68 PF00060 Lig_chan: Ligand-gate 40.6 30 0.00064 30.5 3.4 74 262-341 42-115 (148)
69 PF10011 DUF2254: Predicted me 40.6 1.7E+02 0.0036 30.8 9.4 66 259-324 95-160 (371)
70 KOG2301 Voltage-gated Ca2+ cha 38.7 1.8E+02 0.004 36.5 10.3 44 31-95 872-915 (1592)
71 COG1917 Uncharacterized conser 38.2 71 0.0015 27.7 5.3 50 412-466 45-95 (131)
72 PF07697 7TMR-HDED: 7TM-HD ext 36.8 1.1E+02 0.0023 29.2 6.8 59 372-431 146-207 (222)
73 COG5559 Uncharacterized conser 36.5 35 0.00077 25.0 2.4 18 369-386 6-23 (65)
74 PF11151 DUF2929: Protein of u 36.4 23 0.00049 26.2 1.5 18 264-281 2-19 (57)
75 TIGR03404 bicupin_oxalic bicup 35.7 98 0.0021 32.5 6.7 53 412-464 247-300 (367)
76 PRK11171 hypothetical protein; 35.2 1.5E+02 0.0031 29.6 7.6 48 413-465 64-113 (266)
77 PF14841 FliG_M: FliG middle d 32.9 72 0.0016 25.2 4.0 38 369-414 31-68 (79)
78 PF13623 SurA_N_2: SurA N-term 30.7 79 0.0017 28.3 4.3 46 295-340 9-67 (145)
79 PF01484 Col_cuticle_N: Nemato 30.6 2E+02 0.0042 20.3 7.1 42 293-334 8-49 (53)
80 PRK11171 hypothetical protein; 27.9 1.5E+02 0.0033 29.4 6.3 50 411-465 185-235 (266)
81 PRK06771 hypothetical protein; 27.3 3.5E+02 0.0076 22.2 7.6 33 307-339 15-47 (93)
82 PRK09943 DNA-binding transcrip 27.1 1.9E+02 0.0041 26.8 6.5 45 416-465 113-158 (185)
83 KOG0498 K+-channel ERG and rel 26.9 3.8E+02 0.0083 30.8 9.8 41 372-412 371-416 (727)
84 PF12973 Cupin_7: ChrR Cupin-l 26.3 1.9E+02 0.0042 23.2 5.6 64 411-497 25-88 (91)
85 PF08763 Ca_chan_IQ: Voltage g 24.9 94 0.002 20.5 2.6 23 530-552 7-29 (35)
86 COG3257 GlxB Uncharacterized p 24.4 2.8E+02 0.006 26.6 6.7 56 426-500 79-136 (264)
87 TIGR03214 ura-cupin putative a 24.2 1.9E+02 0.0042 28.6 6.3 47 414-465 62-110 (260)
88 PF08566 Pam17: Mitochondrial 22.3 6.3E+02 0.014 23.3 9.2 70 276-345 60-132 (173)
89 COG3837 Uncharacterized conser 22.1 1.4E+02 0.003 27.0 4.2 47 415-466 47-95 (161)
90 smart00513 SAP Putative DNA-bi 21.8 1.2E+02 0.0026 19.6 2.9 24 331-354 6-34 (35)
91 PF10281 Ish1: Putative stress 21.4 1.2E+02 0.0026 20.1 2.9 15 332-346 7-21 (38)
92 PF00612 IQ: IQ calmodulin-bin 20.6 1.1E+02 0.0025 17.1 2.3 16 534-549 3-18 (21)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=6.6e-100 Score=819.59 Aligned_cols=488 Identities=44% Similarity=0.775 Sum_probs=439.7
Q ss_pred ceecccccceeEeecCCCCceEEecCcchhhhHHHHHHhHHHHHHHHHHHhhheeecCCcccccCCeeeechHHhHHhhh
Q 007897 2 SLAVDPLFFYALSIGRGGAPCLYMDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYV 81 (585)
Q Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~~f~~Di~l~F~t~y~~~~~~~~~~g~lV~d~~~Ia~~Yl 81 (585)
++++||+|||++.+..+ ..| +|+....+++++|.++|++|++||++||+|||++++| -++|.||++||+||+
T Consensus 91 a~~v~P~~f~f~~~~~~-~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv~~~s-----~elV~dpk~IA~rYl 162 (727)
T KOG0498|consen 91 AAFVDPLFFYFLLIDDE-RKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYVDPSS-----YELVDDPKKIAKRYL 162 (727)
T ss_pred HHHhccceeeEEecccc-ccc--ccccccCceeeHHHHHHHHHHHHHHHhheEEEECCCC-----ceeeeCHHHHHHHHH
Confidence 68999999999999885 888 9999999999999999999999999999999999975 379999999999999
Q ss_pred ccccCeeehhhhccCcceeEEEEecccccchhhHHHHHHHHHHHHHHhhhhhhHHHhhhhhceeeccceeehhhHHHHHH
Q 007897 82 RSLKGFWFDVFVILPVPQAVFWLVVPKLIREEKIKMIMTILLIIFLFQFLPKVYHSIYLMRRMQKVTGYIFGTIWWGFGL 161 (585)
Q Consensus 82 k~~~~F~~Dlis~lP~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~rl~r~~~l~~~~~~~~~~~~~~~~~~~~~ 161 (585)
|+ ||++|++|++|+++++.|..+. +.........+..+.+++||+|++|+++++.++++..++..+++|+++++
T Consensus 163 ~t--wFiiDlis~lP~~~i~~~~~~~----~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ 236 (727)
T KOG0498|consen 163 KT--WFLIDLISTLPFDQIVVLVVIG----STSLALESTILVGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAGAAL 236 (727)
T ss_pred hh--hHHHHHHHhcChhhheeeeeec----ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 99 9999999999999999987761 11122222345556667899999999999999999999999999999889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccccccccccccccccccccccCCCCCCCccccCCccccccccccCCC
Q 007897 162 NLIAYFIASHVAGGCWYVLAIQRVASCLRQQCHRQANCNLYLSCSEEVCYQFLVPSGAIGNTCGGNSTTTVRKSLCLDVN 241 (585)
Q Consensus 162 ~l~~~~l~~H~~aC~w~~i~~~~~~~c~~~~c~~~~~c~~~~~c~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~c~~~~ 241 (585)
++++|++++||+||+||++|.++.++||+++| |+..... .-.|. +
T Consensus 237 ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~t------------------------------w~~~l~~---~~~~~--~ 281 (727)
T KOG0498|consen 237 LLSVYLLASHWAGCIWYLIAIERPASCPRKAT------------------------------WLGSLGR---LLSCY--N 281 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCccccc------------------------------ccccccc---ccccC--c
Confidence 99999999999999999999999887887642 2111000 00121 1
Q ss_pred CCccccccccccccccCchhHHHHHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 242 GPFHYGIYQWALPVISSNSVAVKILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVM 321 (585)
Q Consensus 242 ~~~~~~~y~~~~~~~~~~~~~~~Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~ 321 (585)
..|+||+|.++ .+|++|+||+++||||+|||+.+++|..|++|+|++|++|+++||++||||++++++++
T Consensus 282 ~~~~fg~~s~~----------~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~t 351 (727)
T KOG0498|consen 282 LSFTFGIYSLA----------LKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLT 351 (727)
T ss_pred ccccccchhHH----------HHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHh
Confidence 23667776654 59999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCCCChhHHHhhCchHHHHHHHHHHHHHHhhcCCCCCCCc
Q 007897 322 AKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHNLD 401 (585)
Q Consensus 322 ~~~~~~~~~~~~v~~~m~~~~lp~~L~~rv~~y~~~~w~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~v~~F~~~~ 401 (585)
++.++|+.|++++++||++|+||++||+||++|++|+|..++|+||+++|++||.+||+||++|+|.++++++|+|+++|
T Consensus 352 sR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md 431 (727)
T KOG0498|consen 352 SRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMD 431 (727)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhcccCCccCCCC
Q 007897 402 DLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLP 481 (585)
Q Consensus 402 ~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p 481 (585)
++++++|+.++++..|+|||+|++|||+.++||||.+|.+++...+.+|..+...|++||+|||..++||+. .|
T Consensus 432 ~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~~~------~p 505 (727)
T KOG0498|consen 432 DGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFGEELLTWCLD------LP 505 (727)
T ss_pred HHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCccchHHHHHHhc------CC
Confidence 999999999999999999999999999999999999999999987655666699999999999888888863 45
Q ss_pred cceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccCCCccc
Q 007897 482 ASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMRTRGPVISV 556 (585)
Q Consensus 482 ~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r~~s~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 556 (585)
+++||+|+|.|+++.|+++||++++++|| .++++++++++|+|+++|++|+++.+|.+|++|.+|+....++.
T Consensus 506 -~t~TVralt~~el~~L~~~dL~~V~~~f~-~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~~~~~~~~~~l~~ 578 (727)
T KOG0498|consen 506 -QTRTVRALTYCELFRLSADDLKEVLQQFR-RLGSKFLQHTFRYYSHLWRTWAACFIQAAWRRHIKRKGEEELAL 578 (727)
T ss_pred -CCceeehhhhhhHHhccHHHHHHHHHHhH-HHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHhhccchhhh
Confidence 58999999999999999999999999999 89999999999999999999999999999999999987554444
No 2
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=8e-68 Score=529.77 Aligned_cols=403 Identities=22% Similarity=0.345 Sum_probs=348.0
Q ss_pred ecCcchhhhHHHHHHhHHHHHHHHHHHhhheeecCCcccccCCeeeechHHhHHhhhccccCeeehhhhccCcceeEEEE
Q 007897 25 MDGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQAVFWL 104 (585)
Q Consensus 25 ~d~~~~~~~~~~~~~~d~~f~~Di~l~F~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~~~~F~~Dlis~lP~~~i~~~~ 104 (585)
+...+-..|..+|++.|++|++||+++.||+|++ +|.+|+|-++..+||+.+ ..|.+|++|.+|+|+++++.
T Consensus 23 i~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyle-------qGllV~~~~Kl~~hY~~s-~~f~lD~l~liP~D~l~~~~ 94 (536)
T KOG0500|consen 23 IQSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLE-------QGLLVKDTSKLRKHYVHS-TQFKLDVLSLIPLDLLLFKD 94 (536)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh-------cCeeehhhHHHHHHHHHh-hhhhhhhhhhcchhHHhhcC
Confidence 3445667799999999999999999999999999 499999999999999999 49999999999999987653
Q ss_pred ecccccchhhHHHHHHHHHHHHHHhhhhhhHHHhhhhhceeeccceeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 105 VVPKLIREEKIKMIMTILLIIFLFQFLPKVYHSIYLMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQR 184 (585)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~l~~~l~rl~r~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~ 184 (585)
... .. .| +.|+.|++|++.++.+.+..+.+.. .+++.+++...+++.||.||++|+++..
T Consensus 95 ~~~------~~------~r----~nRllk~yRl~~F~~rTetrT~~Pn---~fri~~lv~~~~ilfHWNaClYf~iS~~- 154 (536)
T KOG0500|consen 95 GSA------SL------ER----LNRLLKIYRLFEFFDRTETRTTYPN---AFRISKLVHYCLILFHWNACLYFLISKA- 154 (536)
T ss_pred Ccc------hH------HH----HHHHHHHHHHHHHHHHhccccCCch---HHHHHHHHHHHHHHHHHhhHHHHhhhHh-
Confidence 321 11 11 2367889999999988888887642 3456666667788999999999999862
Q ss_pred HhhHHHHhhccccccccccccccccccccccCCCCCCCccccCCccccccccccCCCCCccccccccccccccCchhHHH
Q 007897 185 VASCLRQQCHRQANCNLYLSCSEEVCYQFLVPSGAIGNTCGGNSTTTVRKSLCLDVNGPFHYGIYQWALPVISSNSVAVK 264 (585)
Q Consensus 185 ~~~c~~~~c~~~~~c~~~~~c~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~c~~~~~~~~~~~y~~~~~~~~~~~~~~~ 264 (585)
++++ .++|...+-.-..-++| ...++.++
T Consensus 155 ------------------------~g~~--------~d~wvY~~i~d~~~~~c-------------------~~~n~~Re 183 (536)
T KOG0500|consen 155 ------------------------IGFT--------TDDWVYPKINDPEFATC-------------------DAGNLTRE 183 (536)
T ss_pred ------------------------cCcc--------ccccccCCccCcccccc-------------------chhHHHHH
Confidence 2222 34575432111111222 22567899
Q ss_pred HHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007897 265 ILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLP 344 (585)
Q Consensus 265 Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~~m~~~~lp 344 (585)
|++|+||+..||||+|--..|.++ .|..|.|+-.++|+++||.++|++++++.++++.+.+||.+|+.+++||+.|++|
T Consensus 184 Y~~S~YWStLTlTTiGe~P~P~t~-~ey~F~I~d~LiGvliFAtIvG~VGsmVtnmna~r~EFq~~mDGiK~YM~~RkV~ 262 (536)
T KOG0500|consen 184 YLYSLYWSTLTLTTIGEQPPPVTS-SEYAFVIVDTLIGVLIFATIVGNVGSMVTNMNAARTEFQAKMDGIKQYMRYRKVP 262 (536)
T ss_pred HHHHHHHHhhhhhhccCCCCCCcC-chhhHHHHHHHHHHHHHhhhhccHhHHHHhhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999996666655 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhHHHhhCchHHHHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEE
Q 007897 345 SRLRQRVRHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKII 424 (585)
Q Consensus 345 ~~L~~rv~~y~~~~w~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~ 424 (585)
++|+.||.+||+|.|++.+..||+++++.||+.||.+|+.+++.+.++++++|+++++.++.++..+++++.|.|||+|+
T Consensus 263 ~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgDyIC 342 (536)
T KOG0500|consen 263 KALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGDYIC 342 (536)
T ss_pred HHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhcccCCccCCCCcceeEEEEecceEEEEecHHHHH
Q 007897 425 REGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLR 504 (585)
Q Consensus 425 ~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~ 504 (585)
++||.+.+||+|.+|++++.. +||.++...+++|++|||.++++-.- . ....+|+++++++..+++++|+++|+.
T Consensus 343 rKGdvgkEMyIVk~G~L~Vv~--dDg~t~~~~L~~G~~FGEisIlni~g--~-~~gNRRtanvrSvGYSDlfvLskdDl~ 417 (536)
T KOG0500|consen 343 RKGDVGKEMYIVKEGKLAVVA--DDGVTVFVTLKAGSVFGEISILNIKG--N-KNGNRRTANVRSVGYSDLFVLSKDDLW 417 (536)
T ss_pred ecCcccceEEEEEccEEEEEe--cCCcEEEEEecCCceeeeeEEEEEcC--c-ccCCcceeeeeeeccceeeEeeHHHHH
Confidence 999999999999999999987 78888899999999999998875321 1 123369999999999999999999999
Q ss_pred HHHHHhhH
Q 007897 505 YITDHFRY 512 (585)
Q Consensus 505 ~ll~~~p~ 512 (585)
+++++||+
T Consensus 418 ~aL~eYP~ 425 (536)
T KOG0500|consen 418 EALSEYPD 425 (536)
T ss_pred HHHHhCCH
Confidence 99999993
No 3
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=1.8e-64 Score=578.62 Aligned_cols=409 Identities=20% Similarity=0.307 Sum_probs=342.0
Q ss_pred chhhhHHHHHHhHHHHHHHHHHHhhheeecCCcccccCCeeeechHHhHHhhhccccCeeehhhhccCcceeEEEEeccc
Q 007897 29 LAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQAVFWLVVPK 108 (585)
Q Consensus 29 ~~~~~~~~~~~~d~~f~~Di~l~F~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~~~~F~~Dlis~lP~~~i~~~~~~~~ 108 (585)
....+.+++.++|++|++||+++|+|||+++. .|.+|.||++|++||+|+ ||++|++|++|++++..... ..
T Consensus 90 ~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~-----~~~lV~d~~~I~~~Yl~~--~f~~Dlis~lP~~~i~~~~~-~~ 161 (823)
T PLN03192 90 PKRGLEIADNVVDLFFAVDIVLTFFVAYIDPR-----TQLLVRDRKKIAVRYLST--WFLMDVASTIPFQALAYLIT-GT 161 (823)
T ss_pred CCCCeeeHHHHHHHHHHHHHHhheeEEEEeCC-----CcEEEeCHHHHHHHHHHH--hHHHHHHHHhHHHHHHHHhc-CC
Confidence 33457899999999999999999999999986 489999999999999999 99999999999987532111 10
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhhhhHHHhhhhhceeeccceeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 007897 109 LIREEKIKMIMTILLIIFLFQFLPKVYHSIYLMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASC 188 (585)
Q Consensus 109 ~~~~~~~~~~~~~l~~~~l~~~l~rl~r~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~c 188 (585)
.. .....++++++ |+.|+.|+.+++.++++...+ ...+.+++++++..++++||+||+||+++...
T Consensus 162 -~~---~~~~~~~l~ll----rl~Rl~ri~~~~~~le~~~~~--~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~---- 227 (823)
T PLN03192 162 -VK---LNLSYSLLGLL----RFWRLRRVKQLFTRLEKDIRF--SYFWIRCARLLSVTLFLVHCAGCLYYLIADRY---- 227 (823)
T ss_pred -cc---chHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----
Confidence 01 11122333333 244555555555555554332 23456777878888889999999999998521
Q ss_pred HHHhhccccccccccccccccccccccCCCCCCCccccCCccccccccccCCCCCccccccccccccccCchhHHHHHHH
Q 007897 189 LRQQCHRQANCNLYLSCSEEVCYQFLVPSGAIGNTCGGNSTTTVRKSLCLDVNGPFHYGIYQWALPVISSNSVAVKILYP 268 (585)
Q Consensus 189 ~~~~c~~~~~c~~~~~c~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~c~~~~~~~~~~~y~~~~~~~~~~~~~~~Yl~s 268 (585)
+..+.+|+... .++..+.+++.+|++|
T Consensus 228 -----------------------------~~~~~~Wi~~~------------------------~~~~~~~s~~~~Yi~s 254 (823)
T PLN03192 228 -----------------------------PHQGKTWIGAV------------------------IPNFRETSLWIRYISA 254 (823)
T ss_pred -----------------------------CCCCCchHHHh------------------------hhccccCcHHHHHHHH
Confidence 01356785320 1123568899999999
Q ss_pred HHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q 007897 269 IFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLR 348 (585)
Q Consensus 269 lywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~~m~~~~lp~~L~ 348 (585)
+||+++|||||||||++|.|..|+++++++|++|+++|||+||+|++++.+.+++..+|+++++.+++||+++++|++||
T Consensus 255 lYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq 334 (823)
T PLN03192 255 IYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLK 334 (823)
T ss_pred HHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHhhCchHHHHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCC
Q 007897 349 QRVRHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGD 428 (585)
Q Consensus 349 ~rv~~y~~~~w~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd 428 (585)
+||++|++++|+. +..+++++++.||++||.+|..+++.+.++++++|++++++++.+++..++++.|+|||.|+.|||
T Consensus 335 ~ri~~y~~~~~~~-~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge 413 (823)
T PLN03192 335 DQILAYMCLRFKA-ESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNE 413 (823)
T ss_pred HHHHHHHHHHHhh-ccccHHHHHHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCC
Confidence 9999999999986 467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeecccchhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHH
Q 007897 429 PVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYIT 507 (585)
Q Consensus 429 ~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll 507 (585)
.++++|||.+|+|++... .+|++. +..+++|++|||.++ +.+.| ++++++|.+.|+++.|++++|.+++
T Consensus 414 ~~~~lY~I~~G~V~i~~~-~~~~e~~l~~l~~Gd~FGE~~~--------l~~~p-~~~t~ra~~~s~ll~l~~~~f~~ll 483 (823)
T PLN03192 414 APDDVYIVVSGEVEIIDS-EGEKERVVGTLGCGDIFGEVGA--------LCCRP-QSFTFRTKTLSQLLRLKTSTLIEAM 483 (823)
T ss_pred CCceEEEEEecEEEEEEe-cCCcceeeEEccCCCEecchHH--------hcCCC-CCCeEEEcccEEEEEEEHHHHHHHH
Confidence 999999999999999864 445554 889999999999966 45556 8999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHH
Q 007897 508 DHFRYKFANERLKRTAR 524 (585)
Q Consensus 508 ~~~p~~~~~~~l~~~~r 524 (585)
+.+| ......++...+
T Consensus 484 ~~~p-~d~~~i~~~~l~ 499 (823)
T PLN03192 484 QTRQ-EDNVVILKNFLQ 499 (823)
T ss_pred HHhh-HHHHHHHHHHHH
Confidence 9999 455555555444
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-62 Score=493.13 Aligned_cols=426 Identities=18% Similarity=0.311 Sum_probs=350.1
Q ss_pred chhhhHHHHHHhHHHHHHHHHHHhhheeecCCcccccCCeeeechHHhHHhhhccccCeeehhhhccCcceeEEEEeccc
Q 007897 29 LAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQAVFWLVVPK 108 (585)
Q Consensus 29 ~~~~~~~~~~~~d~~f~~Di~l~F~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~~~~F~~Dlis~lP~~~i~~~~~~~~ 108 (585)
....|.++|.++|++|++||++||+|.|+.+ .|++|.||+.|..||+|+ ||++|++|++|++.+..+--.+.
T Consensus 247 ~~vs~lvvDSiVDVIF~vDIvLNFHTTFVGP------gGEVvsdPkvIRmNYlKs--WFvIDLLSCLPYDi~naF~~~de 318 (971)
T KOG0501|consen 247 NNVSWLVVDSIVDVIFFVDIVLNFHTTFVGP------GGEVVSDPKVIRMNYLKS--WFVIDLLSCLPYDIFNAFERDDE 318 (971)
T ss_pred CceeEEEecchhhhhhhhhhhhhcceeeecC------CCceecChhHHhHHHHHH--HHHHHHHhcccHHHHHHhhcccc
Confidence 4678899999999999999999999999999 699999999999999999 99999999999998654432222
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhhhhHHHhhhhhceeeccceeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 007897 109 LIREEKIKMIMTILLIIFLFQFLPKVYHSIYLMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASC 188 (585)
Q Consensus 109 ~~~~~~~~~~~~~l~~~~l~~~l~rl~r~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~c 188 (585)
.....+..|+ +.|++|+-|..+++....+| + ...++.+++.|.+++||+||+||.+|..+.-+
T Consensus 319 -----gI~SLFSaLK-------VVRLLRLGRVaRKLD~YlEY--G--AA~LvLLlC~y~lvAHWlACiWysIGd~ev~~- 381 (971)
T KOG0501|consen 319 -----GIGSLFSALK-------VVRLLRLGRVARKLDHYLEY--G--AAVLVLLLCVYGLVAHWLACIWYSIGDYEVRD- 381 (971)
T ss_pred -----cHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh--h--HHHHHHHHHHHHHHHHHHHHhheeccchheec-
Confidence 2222333333 33444555555555554443 2 23467778899999999999999999754310
Q ss_pred HHHhhccccccccccccccccccccccCCCCCCCccccCCccccccccccCCCCCccccccccccccccCchhHHHHHHH
Q 007897 189 LRQQCHRQANCNLYLSCSEEVCYQFLVPSGAIGNTCGGNSTTTVRKSLCLDVNGPFHYGIYQWALPVISSNSVAVKILYP 268 (585)
Q Consensus 189 ~~~~c~~~~~c~~~~~c~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~c~~~~~~~~~~~y~~~~~~~~~~~~~~~Yl~s 268 (585)
...+. -..++|+|+... +...+|+|. ....-.....+|--..|+.|
T Consensus 382 ---------------~~~n~----------i~~dsWL~kLa~--------~~~tpY~~~-~s~~~~~~gGPSr~S~Yiss 427 (971)
T KOG0501|consen 382 ---------------EMDNT----------IQPDSWLWKLAN--------DIGTPYNYN-LSNKGTLVGGPSRTSAYISS 427 (971)
T ss_pred ---------------ccccc----------cccchHHHHHHh--------hcCCCceec-cCCCceeecCCcccceehhh
Confidence 00000 135688875433 223344442 11111223456666789999
Q ss_pred HHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q 007897 269 IFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLR 348 (585)
Q Consensus 269 lywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~~m~~~~lp~~L~ 348 (585)
+||.++.|||||+|.+.|++..|++|++.+|++|.++||-++|+++.|++++.+....|++.++++.+|||-.++|++|.
T Consensus 428 LYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~Ls 507 (971)
T KOG0501|consen 428 LYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLS 507 (971)
T ss_pred hhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHhhCchHHHHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCC
Q 007897 349 QRVRHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGD 428 (585)
Q Consensus 349 ~rv~~y~~~~w~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd 428 (585)
+||.+|.--.|+.++|+|.+++|...|.++|.+|..|++++.++..|-|+-.++..+++++..++.....|||.|++.||
T Consensus 508 ERVMDYvVSTWaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGE 587 (971)
T KOG0501|consen 508 ERVMDYVVSTWAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGE 587 (971)
T ss_pred HHHHHHHHHHhhhhcCcCHHHHhhhCccccccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHH
Q 007897 429 PVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITD 508 (585)
Q Consensus 429 ~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~ 508 (585)
..+.+.||++|.+++.+ ..|+++++++||.||+. .|... ....+.++++|+|.|++..|.++.+.++++
T Consensus 588 SvDaLcFvVsGSLEVIQ----DDEVVAILGKGDVFGD~--FWK~~-----t~~qs~ANVRALTYcDLH~IKrd~Ll~VLd 656 (971)
T KOG0501|consen 588 SVDALCFVVSGSLEVIQ----DDEVVAILGKGDVFGDE--FWKEN-----TLGQSAANVRALTYCDLHMIKRDKLLKVLD 656 (971)
T ss_pred ccceEEEEEecceEEee----cCcEEEEeecCccchhH--Hhhhh-----hhhhhhhhhhhhhhhhhhHHhHHHHHHHHH
Confidence 99999999999999987 23568999999999997 33211 112377899999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHh
Q 007897 509 HFRYKFANERLKRTARY 525 (585)
Q Consensus 509 ~~p~~~~~~~l~~~~r~ 525 (585)
-|. .+++..-+...--
T Consensus 657 FYt-AFanSFaRNl~LT 672 (971)
T KOG0501|consen 657 FYT-AFANSFARNLTLT 672 (971)
T ss_pred HHH-HHHHHhhhceeeE
Confidence 998 6777665554333
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-55 Score=443.94 Aligned_cols=395 Identities=20% Similarity=0.298 Sum_probs=334.2
Q ss_pred hhhhHHHHHHhHHHHHHHH-HHHhhheeecCCcccccCCeeeechHHhHHhhhccccCeeehhhhccCcceeEEEEeccc
Q 007897 30 AAIVTVLRTCVDAVHLFHL-WLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQAVFWLVVPK 108 (585)
Q Consensus 30 ~~~~~~~~~~~d~~f~~Di-~l~F~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~~~~F~~Dlis~lP~~~i~~~~~~~~ 108 (585)
.--|.+.|+++|+++++|| +++=|..|+-. |.+|.|.+...+||+++. .|-+|++|++|+++++++++...
T Consensus 260 ~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrg-------G~~ik~kndtrk~Yl~sr-~FklDllsiLPldllY~~~G~~p 331 (815)
T KOG0499|consen 260 IHYWLIADYICDIIYLLDMLFIQPRLQFVRG-------GDIIKDKNDTRKHYLTSR-KFKLDLLSILPLDLLYLFFGFNP 331 (815)
T ss_pred chhhhhHHHHhhHHHHHHHhhhhhhheeeeC-------ceEEEechHHHHHHHHhh-hhhhhHHhhhhHHHHHHHhccch
Confidence 3458999999999999999 46778888874 999999999999999994 89999999999999876544332
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhhhhHHHhhhhhceeeccceeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 007897 109 LIREEKIKMIMTILLIIFLFQFLPKVYHSIYLMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASC 188 (585)
Q Consensus 109 ~~~~~~~~~~~~~l~~~~l~~~l~rl~r~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~c 188 (585)
+. | +.|++|+-.++.+++.+++... +....+++..+-..+++.|+.||++|+.+...
T Consensus 332 ~w------------R----~~R~lK~~sF~e~~~~Le~i~s---~~y~~RV~rT~~YmlyilHinacvYY~~Sayq---- 388 (815)
T KOG0499|consen 332 MW------------R----ANRMLKYTSFFEFNHHLESIMS---KAYIYRVIRTTGYLLYILHINACVYYWASAYQ---- 388 (815)
T ss_pred hh------------h----hhhHHHHHHHHHHHHHHHHHhc---chhhhhhHHHHHHHHHHHhhhHHHHHHHHhhc----
Confidence 21 1 1133444445555555544432 12223455555555679999999999988532
Q ss_pred HHHhhccccccccccccccccccccccCCCCCCCccccCCccccccccccCCCCCccccccccccccccCchhHHHHHHH
Q 007897 189 LRQQCHRQANCNLYLSCSEEVCYQFLVPSGAIGNTCGGNSTTTVRKSLCLDVNGPFHYGIYQWALPVISSNSVAVKILYP 268 (585)
Q Consensus 189 ~~~~c~~~~~c~~~~~c~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~c~~~~~~~~~~~y~~~~~~~~~~~~~~~Yl~s 268 (585)
+. ..+.|+... -...|++|
T Consensus 389 ---------------------gl--------G~~rWVydg--------------------------------~Gn~YiRC 407 (815)
T KOG0499|consen 389 ---------------------GL--------GTTRWVYDG--------------------------------EGNEYIRC 407 (815)
T ss_pred ---------------------cc--------ccceeEEcC--------------------------------CCCceeee
Confidence 11 245664211 12469999
Q ss_pred HHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Q 007897 269 IFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLR 348 (585)
Q Consensus 269 lywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~~m~~~~lp~~L~ 348 (585)
+|||+-|++|+|....| +|..|++|..+--+.|+++||.+||.|-.++.+.+..++.|+..|++.-.||++.+||.+.|
T Consensus 408 yyfa~kt~~tiG~~P~P-~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevq 486 (815)
T KOG0499|consen 408 YYFAVKTLITIGGLPEP-QTLFEIVFQLLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQ 486 (815)
T ss_pred hhhHHHHHHHhcCCCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 99999999999996665 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHhhCchHHHHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCC
Q 007897 349 QRVRHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGD 428 (585)
Q Consensus 349 ~rv~~y~~~~w~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd 428 (585)
.|||.+|+|.|..++..||.++++.||..||.+++..++...+.++.+|++++.+.+..++.+++...|.|||.|+++||
T Consensus 487 nRVr~WyeyTW~sQr~LDEs~ll~~LP~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGe 566 (815)
T KOG0499|consen 487 NRVRTWYEYTWDSQRMLDESDLLKTLPTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGE 566 (815)
T ss_pred HHHHHHHHhhhhhhccccHHHHHHhcchhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHH
Q 007897 429 PVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITD 508 (585)
Q Consensus 429 ~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~ 508 (585)
.+.+||+|..|+|++.. +++|+.++.+|.+|++|||++|+. +.+..+|+++++|.+.|.+++|+++|+++++.
T Consensus 567 iGkEMYIIk~GqvQVlG-Gp~~~~Vl~tL~~GsVFGEISLLa------igG~nRRTAnV~a~Gf~nLfvL~KkdLneil~ 639 (815)
T KOG0499|consen 567 IGKEMYIIKHGQVQVLG-GPDGTKVLVTLKAGSVFGEISLLA------IGGGNRRTANVVAHGFANLFVLDKKDLNEILV 639 (815)
T ss_pred ccceeEEeecceEEEec-CCCCCEEEEEecccceeeeeeeee------ecCCCccchhhhhcccceeeEecHhHHHHHHH
Confidence 99999999999999986 578888899999999999998864 34445699999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHhh
Q 007897 509 HFRYKFANERLKRTARYY 526 (585)
Q Consensus 509 ~~p~~~~~~~l~~~~r~~ 526 (585)
+|| .++.+|++.+|..
T Consensus 640 ~YP--~sq~iLrkkAr~l 655 (815)
T KOG0499|consen 640 HYP--DSQRILRKKARVL 655 (815)
T ss_pred hCc--cHHHHHHHHHHHH
Confidence 999 3666676666553
No 6
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.58 E-value=4e-14 Score=139.32 Aligned_cols=151 Identities=13% Similarity=0.167 Sum_probs=121.9
Q ss_pred HHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccc
Q 007897 388 LDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDEL 467 (585)
Q Consensus 388 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ 467 (585)
.+.++.+|+|+.++++.++.+....+.+.|++|++|+++||.++.+|+|.+|.|+++....++...+..+++|++||+.+
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~ 85 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAA 85 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHH
Confidence 45788999999999999999999999999999999999999999999999999999986544433499999999999985
Q ss_pred hhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHh
Q 007897 468 LSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRM 547 (585)
Q Consensus 468 ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r~~s~~~~~~~~~~~~~~~~~~~~ 547 (585)
+ +++.| +.++++|.++|+++.+++++|.+++.++| .+....++..++.+....+.........+-.|..+
T Consensus 86 ~--------~~~~~-~~~~~~A~~~~~~~~i~~~~~~~l~~~~p-~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Rla~ 155 (236)
T PRK09392 86 V--------VLDAP-YLMSARTLTRSRVLMIPAELVREAMSEDP-GFMRAVVFELAGCYRGLVKSLKNQKLRSSAERLAN 155 (236)
T ss_pred H--------hCCCC-CceEEEEcCceEEEEEeHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 4 45666 88999999999999999999999999999 67776666655544433333333333344444443
Q ss_pred h
Q 007897 548 R 548 (585)
Q Consensus 548 r 548 (585)
-
T Consensus 156 ~ 156 (236)
T PRK09392 156 Y 156 (236)
T ss_pred H
Confidence 3
No 7
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.53 E-value=4.2e-13 Score=129.68 Aligned_cols=118 Identities=18% Similarity=0.190 Sum_probs=102.0
Q ss_pred CCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeecccchhhcccCC
Q 007897 397 FHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDELLSWCLRRP 475 (585)
Q Consensus 397 F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~~ll~~l~~~ 475 (585)
-+.+|++.++.++..++...|++|++|+.+||+.+.+|+|.+|.++++..+.+|++. +..+++|++||+..+
T Consensus 5 ~~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~------- 77 (211)
T PRK11753 5 GKPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGL------- 77 (211)
T ss_pred cCCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhh-------
Confidence 367899999999999999999999999999999999999999999999887888877 899999999999854
Q ss_pred ccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHH
Q 007897 476 FIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTA 523 (585)
Q Consensus 476 ~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~ 523 (585)
+.+.+.++++++|.++|+++.+++++|.+++.++| .+....++..+
T Consensus 78 -~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p-~~~~~~~~~~~ 123 (211)
T PRK11753 78 -FEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNP-DILMALSAQMA 123 (211)
T ss_pred -ccCCCCceEEEEEcCcEEEEEEcHHHHHHHHHHCH-HHHHHHHHHHH
Confidence 33332378899999999999999999999999999 45444444333
No 8
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.46 E-value=8.4e-13 Score=113.34 Aligned_cols=107 Identities=26% Similarity=0.463 Sum_probs=98.1
Q ss_pred CCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeecccchhhcccC
Q 007897 396 LFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDELLSWCLRR 474 (585)
Q Consensus 396 ~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~~ll~~l~~ 474 (585)
+|+.++++.+..++..++...+.+|++|+.+|+..+.+|+|.+|.++++...++|++. +..+.+|++||+..+
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~------ 74 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELAL------ 74 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHH------
Confidence 4788999999999999999999999999999999999999999999999988888776 899999999999854
Q ss_pred CccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhh
Q 007897 475 PFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFR 511 (585)
Q Consensus 475 ~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p 511 (585)
+.+.+ +..+++|.++|+++.+++++|.++++++|
T Consensus 75 --~~~~~-~~~~~~a~~~~~~~~i~~~~~~~~~~~~~ 108 (115)
T cd00038 75 --LGNGP-RSATVRALTDSELLVLPRSDFRRLLQEYP 108 (115)
T ss_pred --hcCCC-CCceEEEcCceEEEEEeHHHHHHHHHHCc
Confidence 23444 78999999999999999999999999999
No 9
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.41 E-value=3.1e-12 Score=124.99 Aligned_cols=110 Identities=20% Similarity=0.278 Sum_probs=95.3
Q ss_pred HHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeecccchhhcccCCccCCCCc
Q 007897 404 ILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDELLSWCLRRPFIDRLPA 482 (585)
Q Consensus 404 ~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~~ll~~l~~~~~~~~p~ 482 (585)
|..++....+...|++|++|+.+||+.+.+|+|.+|.|+++..+++|++. +..+.+|++||+.++ +.+.|
T Consensus 23 ~~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~--------~~~~~- 93 (226)
T PRK10402 23 FSFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIEL--------IDKDH- 93 (226)
T ss_pred CCHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehh--------hcCCC-
Confidence 33457788899999999999999999999999999999999988899987 899999999999854 45555
Q ss_pred ceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHH
Q 007897 483 SSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTA 523 (585)
Q Consensus 483 ~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~ 523 (585)
++++++|.++|+++.+++++|.+++.++| .+....++...
T Consensus 94 ~~~~~~A~~~~~i~~i~~~~~~~ll~~~p-~~~~~~~~~l~ 133 (226)
T PRK10402 94 ETKAVQAIEECWCLALPMKDCRPLLLNDA-LFLRKLCKFLS 133 (226)
T ss_pred CCccEEEeccEEEEEEEHHHHHHHHhcCH-HHHHHHHHHHH
Confidence 88999999999999999999999999999 45555444443
No 10
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.39 E-value=5.2e-13 Score=137.00 Aligned_cols=60 Identities=18% Similarity=0.273 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 264 KILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAK 323 (585)
Q Consensus 264 ~Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~ 323 (585)
..-.++|||+.|||||||||+.|.|...++++..++++|+++.|+-|-.|-+=+....+.
T Consensus 377 SIPa~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~ 436 (477)
T KOG3713|consen 377 SIPAGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSE 436 (477)
T ss_pred cccchhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHH
Confidence 345789999999999999999999999999999999999999998777666554444333
No 11
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.39 E-value=1.7e-12 Score=107.00 Aligned_cols=88 Identities=24% Similarity=0.377 Sum_probs=81.2
Q ss_pred EEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeecccchhhcccCCccCCCCcceeEEEEecce
Q 007897 415 LVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESI 493 (585)
Q Consensus 415 ~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t~~ 493 (585)
+.|.+|++|+++|+..+.+|||++|.++++....+|+.. +..+++|++||+.+++ .+.| +..+++|.++|
T Consensus 2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~--------~~~~-~~~~~~a~~~~ 72 (91)
T PF00027_consen 2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELL--------TGKP-SPFTVIALTDS 72 (91)
T ss_dssp EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHH--------HTSB-BSSEEEESSSE
T ss_pred eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeec--------CCCc-cEEEEEEccCE
Confidence 689999999999999999999999999999998888865 8999999999999664 4445 88999999999
Q ss_pred EEEEecHHHHHHHHHHhh
Q 007897 494 EAFGLDAKNLRYITDHFR 511 (585)
Q Consensus 494 ~l~~l~~~~f~~ll~~~p 511 (585)
+++.|++++|.++++++|
T Consensus 73 ~~~~i~~~~~~~~~~~~p 90 (91)
T PF00027_consen 73 EVLRIPREDFLQLLQQDP 90 (91)
T ss_dssp EEEEEEHHHHHHHHHHSH
T ss_pred EEEEEeHHHHHHHHHhCc
Confidence 999999999999999999
No 12
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.39 E-value=9.8e-12 Score=107.29 Aligned_cols=110 Identities=29% Similarity=0.443 Sum_probs=97.8
Q ss_pred CCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeecccchhhcccC
Q 007897 396 LFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDELLSWCLRR 474 (585)
Q Consensus 396 ~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~~ll~~l~~ 474 (585)
+|.+++++.++.++..++...+.+|++|+++|++.+.+|+|.+|.++++..+.+|++. +..+.+|++||+..++.
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~---- 76 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLT---- 76 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhcc----
Confidence 4788999999999999999999999999999999999999999999999887778776 89999999999986531
Q ss_pred CccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhH
Q 007897 475 PFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRY 512 (585)
Q Consensus 475 ~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~ 512 (585)
....| ...+++|.++|+++.++.+++......+|.
T Consensus 77 --~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 111 (120)
T smart00100 77 --NSRRA-ASATAVALELATLLRIDFRDFLQLLQENPQ 111 (120)
T ss_pred --CCCcc-cceEEEEEeeEEEEccCHHHHHHHHHHhHH
Confidence 02233 788999999999999999999999999983
No 13
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.39 E-value=1.1e-11 Score=122.02 Aligned_cols=122 Identities=15% Similarity=0.214 Sum_probs=101.6
Q ss_pred hhcCCCCCCCcHHHHHHHHhhcce-EEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeecccch
Q 007897 391 IKKVPLFHNLDDLILDNICDRVRP-LVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDELL 468 (585)
Q Consensus 391 l~~v~~F~~~~~~~l~~l~~~l~~-~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~~l 468 (585)
+++.+.|..++++.++.|....+. ..|.+|+.|+++||..+.+|+|.+|.|+++..+++|++. +..+.+|++||+.++
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~ 94 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI 94 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence 455555657999999999988864 689999999999999999999999999999988889886 888899999998643
Q ss_pred hhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHH
Q 007897 469 SWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTA 523 (585)
Q Consensus 469 l~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~ 523 (585)
..+ + ++.+++|.++|+++.+++++|.+++.++| .+....++...
T Consensus 95 --------~~~-~-~~~~~~a~~~~~i~~ip~~~f~~l~~~~p-~~~~~~~~~~~ 138 (235)
T PRK11161 95 --------GSG-Q-HPSFAQALETSMVCEIPFETLDDLSGKMP-KLRQQIMRLMS 138 (235)
T ss_pred --------cCC-C-CcceEEEeccEEEEEEEHHHHHHHHHHCh-HHHHHHHHHHH
Confidence 222 2 45689999999999999999999999999 45554444433
No 14
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.39 E-value=9.2e-12 Score=119.94 Aligned_cols=126 Identities=24% Similarity=0.335 Sum_probs=106.1
Q ss_pred hcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeecccchhh
Q 007897 392 KKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDELLSW 470 (585)
Q Consensus 392 ~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~~ll~ 470 (585)
.+.+.|...+++....+....+...+++|++|+++||+++.+|+|.+|.++++...++|++. +..+++|++||+.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~- 81 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALL- 81 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHh-
Confidence 44566776777887777788999999999999999999999999999999999998899887 8899999999999763
Q ss_pred cccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 007897 471 CLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYS 527 (585)
Q Consensus 471 ~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r~~s 527 (585)
.+.| ++++++|.++|+++.+++++|.+++.+.| .+....++...+...
T Consensus 82 -------~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~p-~l~~~l~~~~~~~l~ 129 (214)
T COG0664 82 -------GGDP-RSASAVALTDVEVLEIPRKDFLELLAESP-KLALALLRLLARRLR 129 (214)
T ss_pred -------cCCC-ccceEEEcceEEEEEecHHHHHHHHhhCc-HHHHHHHHHHHHHHH
Confidence 4445 89999999999999999999999887777 455555555544443
No 15
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.36 E-value=1.8e-12 Score=123.23 Aligned_cols=194 Identities=19% Similarity=0.275 Sum_probs=118.9
Q ss_pred HHHHHhHHHHHHHHHHHhhheeecCCcccccCCeeeechHHhHHhhhccccCeeehhhhccCcceeEEEEecccccchhh
Q 007897 35 VLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQAVFWLVVPKLIREEK 114 (585)
Q Consensus 35 ~~~~~~d~~f~~Di~l~F~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~~~~F~~Dlis~lP~~~i~~~~~~~~~~~~~~ 114 (585)
+++.+.+++|.+|+++++++.... +++|++++ |.++|+++++|....+..... ...+
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~------------------~~~y~~~~-~~~~d~~~~~~~~~~~~~~~~----~~~~ 57 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFK------------------RRRYFRSW-WNWFDFISVIPSIVSVILRSY----GSAS 57 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG-------------------GCCCCSH-HHHHHHHHHHHHCCHHCCHCS----S--H
T ss_pred CChHHHHHHHHHHHHHHHHHhccH------------------HHHHhcCh-hhccccccccccccccccccc----cccc
Confidence 478999999999999999875332 68899983 888999999998653321111 1110
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHhhhhhceeeccceeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhc
Q 007897 115 IKMIMTILLIIFLFQFLPKVYHSIYLMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCLRQQCH 194 (585)
Q Consensus 115 ~~~~~~~l~~~~l~~~l~rl~r~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~c~~~~c~ 194 (585)
.....+..++++ +.|++|+.+..+.+++...... .....+.+.++.+++..|+.||+++.+.......|..
T Consensus 58 ~~~~~~~~~~l~----~~R~l~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~---- 128 (200)
T PF00520_consen 58 AQSLLRIFRLLR----LLRLLRLLRRFRSLRRLLRALI-RSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCD---- 128 (200)
T ss_dssp HCHCHHHHHHHH----HHHHHHHHHTTTSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS---------
T ss_pred ccceEEEEEeec----cccccccccccccccccccccc-cccccccccccccccccccccchhheecccccccccc----
Confidence 001122222221 2334444443333333222111 2223455566667789999999999887522110000
Q ss_pred cccccccccccccccccccccCCCCCCCccccCCccccccccccCCCCCccccccccccccccCchhHHHHHHHHHHHHH
Q 007897 195 RQANCNLYLSCSEEVCYQFLVPSGAIGNTCGGNSTTTVRKSLCLDVNGPFHYGIYQWALPVISSNSVAVKILYPIFWGLM 274 (585)
Q Consensus 195 ~~~~c~~~~~c~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~c~~~~~~~~~~~y~~~~~~~~~~~~~~~Yl~slywa~~ 274 (585)
.++... +.....+..+.|..|+||++.
T Consensus 129 ---------------------------~~~~~~--------------------------~~~~~~~~f~~~~~s~~~~~~ 155 (200)
T PF00520_consen 129 ---------------------------PTWDSE--------------------------NDIYGYENFDSFGESLYWLFQ 155 (200)
T ss_dssp -----------------------------SS------------------------------SSTHHHHSSHHHHHHHHHH
T ss_pred ---------------------------cccccc--------------------------ccccccccccccccccccccc
Confidence 000000 001234556789999999999
Q ss_pred HhhccCCccccCC-----chhhHHHH-HHHHHHHHHHHHHHHHHH
Q 007897 275 TLSTFGNDLEPTS-----HWLEVMFS-ICIVLSGLMLFTLLIGNI 313 (585)
Q Consensus 275 tlttvGyg~~~~~-----~~~E~~~~-i~~~i~G~~~fa~iig~i 313 (585)
++||.|+++..+. +..+.++. +++.+.+.++++.++|.|
T Consensus 156 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 156 TMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 9999999887775 77899998 677777779999999875
No 16
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.34 E-value=1.9e-12 Score=132.40 Aligned_cols=117 Identities=23% Similarity=0.411 Sum_probs=104.1
Q ss_pred HHHHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCC-CcEE-EEecCCCCee
Q 007897 386 LCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSK-GMVA-TSVLEPGGFL 463 (585)
Q Consensus 386 ~~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~-g~~~-~~~l~~G~~f 463 (585)
-+.++|+++|+|+++|++.+..++..++...|..|++|++||+.++.+|+|.+|.|.+.+.++. +.+. +..+..||+|
T Consensus 269 ~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~F 348 (732)
T KOG0614|consen 269 QYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDYF 348 (732)
T ss_pred HHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccchh
Confidence 3678999999999999999999999999999999999999999999999999999999886543 3333 8999999999
Q ss_pred cccchhhcccCCccCCCCcceeEEEEecc-eEEEEecHHHHHHHHHHhh
Q 007897 464 GDELLSWCLRRPFIDRLPASSATFVCMES-IEAFGLDAKNLRYITDHFR 511 (585)
Q Consensus 464 Ge~~ll~~l~~~~~~~~p~~~~tv~A~t~-~~l~~l~~~~f~~ll~~~p 511 (585)
||.+|+. .. +|++++.|..+ ++++.|+++.|..++...-
T Consensus 349 GE~al~~--------ed-vRtAniia~~~gv~cl~lDresF~~liG~l~ 388 (732)
T KOG0614|consen 349 GERALLG--------ED-VRTANIIAQAPGVECLTLDRESFKKLIGDLE 388 (732)
T ss_pred hHHHhhc--------cC-ccchhhhccCCCceEEEecHHHHHHhcccHH
Confidence 9998742 22 48999999998 9999999999999998765
No 17
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.26 E-value=4.2e-11 Score=127.40 Aligned_cols=113 Identities=22% Similarity=0.355 Sum_probs=101.8
Q ss_pred HHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccc
Q 007897 388 LDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDEL 467 (585)
Q Consensus 388 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ 467 (585)
.+.++++++|++++++.++.++..++.+.|.+||+|+++||..+.+|+|.+|.|+++..+.+|+..+..+++|++||+.
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~~- 85 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGYG- 85 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeehh-
Confidence 4568899999999999999999999999999999999999999999999999999998877785558899999999974
Q ss_pred hhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhh
Q 007897 468 LSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFR 511 (585)
Q Consensus 468 ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p 511 (585)
+ .+.+ +..+++|.++|+++.|++++|..+...++
T Consensus 86 l---------~~~~-~~~~~~A~~d~~v~~ip~~~~~~~~~~~~ 119 (413)
T PLN02868 86 L---------SGSV-HSADVVAVSELTCLVLPHEHCHLLSPKSI 119 (413)
T ss_pred h---------CCCC-cccEEEECCCEEEEEEcHHHHhhhccccc
Confidence 2 3444 88999999999999999999998887665
No 18
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=99.25 E-value=8.9e-11 Score=114.99 Aligned_cols=106 Identities=20% Similarity=0.181 Sum_probs=90.6
Q ss_pred HHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeecccchhhcccCCccCCCCccee
Q 007897 407 NICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDELLSWCLRRPFIDRLPASSA 485 (585)
Q Consensus 407 ~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~ 485 (585)
.++...+...|++|++|+.+||.++.+|+|.+|.|+++..+++|++. +..+.+|++||+. .+.| +..
T Consensus 33 ~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~-----------~~~~-~~~ 100 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE-----------SGST-HRF 100 (230)
T ss_pred cccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc-----------CCCc-CCe
Confidence 44556788999999999999999999999999999999988899876 8889999999964 2334 679
Q ss_pred EEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 007897 486 TFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARY 525 (585)
Q Consensus 486 tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r~ 525 (585)
+++|+++|+++.+++++|++++.++| .+....++...+.
T Consensus 101 ~~~A~~ds~v~~i~~~~f~~l~~~~p-~l~~~l~~~l~~~ 139 (230)
T PRK09391 101 TAEAIVDTTVRLIKRRSLEQAAATDV-DVARALLSLTAGG 139 (230)
T ss_pred EEEEcCceEEEEEEHHHHHHHHhhCh-HHHHHHHHHHHHH
Confidence 99999999999999999999999999 5666655555443
No 19
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.25 E-value=1e-11 Score=121.99 Aligned_cols=111 Identities=27% Similarity=0.383 Sum_probs=99.7
Q ss_pred HHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccc
Q 007897 388 LDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDEL 467 (585)
Q Consensus 388 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ 467 (585)
.+.+++.-+|++++++.+..+...|.+..+..|+.|++|||.++.+|+|.+|.++++.. | +.+..+++|..|||.+
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~---~-~~v~~~~~g~sFGElA 196 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVN---G-TYVTTYSPGGSFGELA 196 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEEC---C-eEEeeeCCCCchhhhH
Confidence 56778888999999999999999999999999999999999999999999999999973 3 3488999999999998
Q ss_pred hhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhh
Q 007897 468 LSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFR 511 (585)
Q Consensus 468 ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p 511 (585)
|++ +.| |.+|+.|.+++.+|.|++..|..++-...
T Consensus 197 Lmy--------n~P-RaATv~a~t~~klWgldr~SFrrIi~~s~ 231 (368)
T KOG1113|consen 197 LMY--------NPP-RAATVVAKSLKKLWGLDRTSFRRIIMKSC 231 (368)
T ss_pred hhh--------CCC-cccceeeccccceEEEeeceeEEEeeccc
Confidence 854 445 99999999999999999999998775543
No 20
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.25 E-value=8.5e-12 Score=127.70 Aligned_cols=125 Identities=20% Similarity=0.331 Sum_probs=109.8
Q ss_pred CchHHHHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE
Q 007897 374 LPEGLRRGIKRYLCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA 453 (585)
Q Consensus 374 Lp~~Lr~~i~~~~~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~ 453 (585)
||..-|..-..++-++.+++..|++++++..+.+++.+|-+..|.+|+.|++|||+++.+|.+.+|++++.+ +|+ .
T Consensus 139 l~~~~Kd~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~---~g~-l 214 (732)
T KOG0614|consen 139 LPRYNKDVGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR---EGK-L 214 (732)
T ss_pred cccccCCccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee---CCe-e
Confidence 333334445566678889999999999999999999999999999999999999999999999999999986 354 4
Q ss_pred EEecCCCCeecccchhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhh
Q 007897 454 TSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFR 511 (585)
Q Consensus 454 ~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p 511 (585)
++.+++|..|||.++++++. |+++++|+++|++|.|+|+-|+.++..-.
T Consensus 215 l~~m~~gtvFGELAILynct---------RtAsV~alt~~~lWaidR~vFq~IM~~tg 263 (732)
T KOG0614|consen 215 LGKMGAGTVFGELAILYNCT---------RTASVRALTDVRLWAIDREVFQAIMMRTG 263 (732)
T ss_pred eeccCCchhhhHHHHHhCCc---------chhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 89999999999999987653 99999999999999999999999987654
No 21
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=99.21 E-value=2e-10 Score=109.17 Aligned_cols=97 Identities=16% Similarity=0.225 Sum_probs=82.3
Q ss_pred CCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeecccchhhcccCCccCCCC-cceeEEEEecceEEEE
Q 007897 420 DEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDELLSWCLRRPFIDRLP-ASSATFVCMESIEAFG 497 (585)
Q Consensus 420 ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~~ll~~l~~~~~~~~p-~~~~tv~A~t~~~l~~ 497 (585)
|+.|+++||+.+.+|+|.+|.|+++...++|++. +..+++|++||+.++ +.+.+ .+.++++|.++|+++.
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~--------~~~~~~~~~~~~~A~~~~~v~~ 72 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSL--------ITGHRSDRFYHAVAFTRVELLA 72 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeee--------ccCCCCccceEEEEecceEEEE
Confidence 7899999999999999999999999988899987 899999999999855 33433 1457899999999999
Q ss_pred ecHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 007897 498 LDAKNLRYITDHFRYKFANERLKRTARY 525 (585)
Q Consensus 498 l~~~~f~~ll~~~p~~~~~~~l~~~~r~ 525 (585)
+++++|++++.++| .+....++...+.
T Consensus 73 i~~~~~~~l~~~~p-~l~~~~~~~l~~~ 99 (193)
T TIGR03697 73 VPIEQVEKAIEEDP-DLSMLLLQGLSSR 99 (193)
T ss_pred eeHHHHHHHHHHCh-HHHHHHHHHHHHH
Confidence 99999999999999 5666555554443
No 22
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.16 E-value=4.4e-10 Score=117.00 Aligned_cols=119 Identities=21% Similarity=0.277 Sum_probs=104.5
Q ss_pred HHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccc
Q 007897 388 LDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDEL 467 (585)
Q Consensus 388 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ 467 (585)
.+++.+.|.|..++++.+.+|...++...|.+||+|+..|.+.+.+|+|.+|.|+++. ++|+ .+..+..||.||-.+
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~--~~g~-v~~~~~~gdlFg~~~ 82 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRS--DGGE-VLDRLAAGDLFGFSS 82 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEc--CCCe-eeeeeccCccccchh
Confidence 5688999999999999999999999999999999999999999999999999999986 4554 689999999999997
Q ss_pred hhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHH
Q 007897 468 LSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERL 519 (585)
Q Consensus 468 ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l 519 (585)
| ++..+ ...++.|.+++-+|.|+++.|.+++.++| .++.-..
T Consensus 83 l--------~~~~~-~~~~~~aeedsl~y~lp~s~F~ql~~~n~-~f~~ff~ 124 (610)
T COG2905 83 L--------FTELN-KQRYMAAEEDSLCYLLPKSVFMQLMEENP-EFADFFL 124 (610)
T ss_pred h--------cccCC-CcceeEeeccceEEecCHHHHHHHHHhCc-HHHHHHH
Confidence 6 34444 45678888899999999999999999999 4544433
No 23
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=99.16 E-value=4.7e-10 Score=107.57 Aligned_cols=83 Identities=16% Similarity=0.202 Sum_probs=73.6
Q ss_pred hcceEEeCCCCEEEccCC--CcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeecccchhhcccCCccCCCCcceeEE
Q 007897 411 RVRPLVYSKDEKIIREGD--PVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDELLSWCLRRPFIDRLPASSATF 487 (585)
Q Consensus 411 ~l~~~~~~~ge~I~~~Gd--~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv 487 (585)
.++...|++|++|+++|| +.+.+|+|.+|.|+++..+.+|++. +..+.+|++||+.++ . +.| ++.++
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~--------~-~~~-~~~~~ 74 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEAL--------A-GAE-RAYFA 74 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHh--------c-CCC-CCceE
Confidence 467889999999999999 7799999999999999998999988 889999999998643 2 234 77899
Q ss_pred EEecceEEEEecHHHH
Q 007897 488 VCMESIEAFGLDAKNL 503 (585)
Q Consensus 488 ~A~t~~~l~~l~~~~f 503 (585)
+|.++|+++.+++++|
T Consensus 75 ~A~~~~~v~~i~~~~~ 90 (202)
T PRK13918 75 EAVTDSRIDVLNPALM 90 (202)
T ss_pred EEcCceEEEEEEHHHc
Confidence 9999999999999887
No 24
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.04 E-value=1.9e-11 Score=119.55 Aligned_cols=47 Identities=15% Similarity=0.253 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHH
Q 007897 265 ILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIG 311 (585)
Q Consensus 265 Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig 311 (585)
.-.|+|||++|||||||||..|.++..+++..++.+.|++-.|.-+-
T Consensus 394 IPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVP 440 (507)
T KOG1545|consen 394 IPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVP 440 (507)
T ss_pred CcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEeccccc
Confidence 45789999999999999999999999999999999999988776443
No 25
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.00 E-value=3e-09 Score=85.47 Aligned_cols=55 Identities=20% Similarity=0.402 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 264 KILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLH 318 (585)
Q Consensus 264 ~Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~ 318 (585)
.|..|+||+++|+||+||||+.|.+..+++++++.+++|+.++++.++.+++.+.
T Consensus 24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999989899999999999999999999999998874
No 26
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.98 E-value=6.6e-10 Score=109.42 Aligned_cols=117 Identities=22% Similarity=0.394 Sum_probs=104.5
Q ss_pred HHHHHHHHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCC
Q 007897 382 IKRYLCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGG 461 (585)
Q Consensus 382 i~~~~~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~ 461 (585)
..+.||.+.|+++|+++.+.......++..+.+..|.+|+.|+.||++++.+|+|.+|.|.+.... +|-+ + .++.|+
T Consensus 233 kkrkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~-~~v~-v-kl~~~d 309 (368)
T KOG1113|consen 233 KKRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKR-DGVE-V-KLKKGD 309 (368)
T ss_pred hhhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhcc-CCeE-E-Eechhh
Confidence 356778999999999999999999999999999999999999999999999999999999998653 4422 5 999999
Q ss_pred eecccchhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHh
Q 007897 462 FLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHF 510 (585)
Q Consensus 462 ~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~ 510 (585)
+|||.+|+ .+.| |.++|.|.+...+..+++..|+.++.--
T Consensus 310 yfge~al~--------~~~p-r~Atv~a~~~~kc~~~dk~~ferllgpc 349 (368)
T KOG1113|consen 310 YFGELALL--------KNLP-RAATVVAKGRLKCAKLDKPRFERLLGPC 349 (368)
T ss_pred hcchHHHH--------hhch-hhceeeccCCceeeeeChHHHHHHhhHH
Confidence 99999885 4555 8999999999999999999999999843
No 27
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=98.90 E-value=3e-08 Score=102.65 Aligned_cols=88 Identities=23% Similarity=0.423 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007897 262 AVKILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRR 341 (585)
Q Consensus 262 ~~~Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~~m~~~ 341 (585)
+..|-.|+||++.|+||+||||.+|.++..++++....++|+.+||.--|.+++=++-.-+ ++ +.=++|-|++
T Consensus 267 F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQ--eq-----~RQKHf~rrr 339 (654)
T KOG1419|consen 267 FPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQ--EQ-----HRQKHFNRRR 339 (654)
T ss_pred chhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhH--HH-----HHHHHHHhhc
Confidence 4578999999999999999999999999999999999999999999998888875532211 11 1124567777
Q ss_pred CCCHHHHHHHHHHHH
Q 007897 342 QLPSRLRQRVRHYER 356 (585)
Q Consensus 342 ~lp~~L~~rv~~y~~ 356 (585)
+.--.|.+-.-+||.
T Consensus 340 ~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 340 NPAASLIQCAWRYYA 354 (654)
T ss_pred chHHHHHHHHHHHHh
Confidence 777778777766663
No 28
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.53 E-value=2.7e-07 Score=95.64 Aligned_cols=61 Identities=18% Similarity=0.259 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 263 VKILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAK 323 (585)
Q Consensus 263 ~~Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~ 323 (585)
-.|..++|+.++||+||||||+..++...+.|.++.++.|+.+||--+-.|..++.+-++-
T Consensus 287 ltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~ky 347 (1103)
T KOG1420|consen 287 LTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKY 347 (1103)
T ss_pred chhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHcccccc
Confidence 3688999999999999999999999999999999999999999999999999998775443
No 29
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.49 E-value=3.1e-09 Score=104.99 Aligned_cols=185 Identities=19% Similarity=0.241 Sum_probs=115.2
Q ss_pred chhhhHHHHHHhHHHHHHHHHHHhhheeecCCcccccCCeeeechHHhHHhhhccccCeeehhhhccCcceeEEEEeccc
Q 007897 29 LAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQAVFWLVVPK 108 (585)
Q Consensus 29 ~~~~~~~~~~~~d~~f~~Di~l~F~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~~~~F~~Dlis~lP~~~i~~~~~~~~ 108 (585)
+....+.+|..+-++|-.+.+++...| ++ ..+++|+- .=++|+++++|+..- ++.+.
T Consensus 225 y~~aFFclDTACVmIFT~EYlLRL~aA---Ps----------------R~rF~RSv-MSiIDVvAIlPYYig---Lv~t~ 281 (632)
T KOG4390|consen 225 YPVAFFCLDTACVMIFTGEYLLRLFAA---PS----------------RYRFLRSV-MSIIDVVAILPYYIG---LVMTD 281 (632)
T ss_pred cceeeEEecceeEEEeeHHHHHHHHcC---ch----------------HHHHHHHH-HHHHHHhhhhhhheE---EEecC
Confidence 344566778888889999999988754 21 45667762 457999999998752 22222
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhhhhHHHhhhhhcee--eccceeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007897 109 LIREEKIKMIMTILLIIFLFQFLPKVYHSIYLMRRMQ--KVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVA 186 (585)
Q Consensus 109 ~~~~~~~~~~~~~l~~~~l~~~l~rl~r~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~ 186 (585)
.-+ +...+-.| |+.|++|++++.+.-+ +..+|-.++....+-++++.+..++-++|-+.|+.-.
T Consensus 282 N~D---VSGaFVTL-------RVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEK---- 347 (632)
T KOG4390|consen 282 NED---VSGAFVTL-------RVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEK---- 347 (632)
T ss_pred Ccc---ccceeEEE-------EeeeeeeeeeecccccccchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhc----
Confidence 111 11111111 3445555555544322 2344433333333445555444555566666665221
Q ss_pred hHHHHhhccccccccccccccccccccccCCCCCCCccccCCccccccccccCCCCCccccccccccccccCchhHHHHH
Q 007897 187 SCLRQQCHRQANCNLYLSCSEEVCYQFLVPSGAIGNTCGGNSTTTVRKSLCLDVNGPFHYGIYQWALPVISSNSVAVKIL 266 (585)
Q Consensus 187 ~c~~~~c~~~~~c~~~~~c~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~c~~~~~~~~~~~y~~~~~~~~~~~~~~~Yl 266 (585)
| .+.+.++..-
T Consensus 348 -------------------------g--------------------------------------------~~at~FTsIP 358 (632)
T KOG4390|consen 348 -------------------------G--------------------------------------------SSATKFTSIP 358 (632)
T ss_pred -------------------------c--------------------------------------------ccccccccCc
Confidence 0 0112223345
Q ss_pred HHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 007897 267 YPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTL----LIGNIQVFLHA 319 (585)
Q Consensus 267 ~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~----iig~i~~il~~ 319 (585)
.++|+.++||||.||||..|.++..++|..++.+.|+++.|. +++|.+.|-++
T Consensus 359 aaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQ 415 (632)
T KOG4390|consen 359 AAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQ 415 (632)
T ss_pred HhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHHhh
Confidence 789999999999999999999999999999999999988874 56777777553
No 30
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=98.19 E-value=2.2e-06 Score=93.65 Aligned_cols=114 Identities=15% Similarity=0.236 Sum_probs=94.0
Q ss_pred HHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcE-EEEecCCCCeecccchhhcccCCccCCCC
Q 007897 403 LILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMV-ATSVLEPGGFLGDELLSWCLRRPFIDRLP 481 (585)
Q Consensus 403 ~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~-~~~~l~~G~~fGe~~ll~~l~~~~~~~~p 481 (585)
.++..+-..+......||+.+++|||..+++|+|.+|+++.......|+. .+..++.||.+|+...+ ++.|
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~l--------t~~~ 570 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEML--------TKQP 570 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHh--------hcCC
Confidence 45566666788899999999999999999999999999998876556665 48999999999999653 5666
Q ss_pred cceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 007897 482 ASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYY 526 (585)
Q Consensus 482 ~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r~~ 526 (585)
|..|+.|+.++++..|+..-|..+..+|| .+-.+..+..++.+
T Consensus 571 -R~tTv~AvRdSelariPe~l~~~ik~ryP-~v~~rl~~ll~~~~ 613 (1158)
T KOG2968|consen 571 -RATTVMAVRDSELARIPEGLLNFIKLRYP-QVVTRLIKLLAEKI 613 (1158)
T ss_pred -ccceEEEEeehhhhhccHHHHHHHHHhcc-HHHHHHHHHHHHHh
Confidence 88999999999999999999999999999 44444444444443
No 31
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.05 E-value=3.1e-05 Score=81.26 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 264 KILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFL 317 (585)
Q Consensus 264 ~Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il 317 (585)
.+..|+||++.|+||+||||+.|.+...++++++++++|+.+|++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999888889999999999999999999999887643
No 32
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.76 E-value=0.00028 Score=72.25 Aligned_cols=54 Identities=15% Similarity=0.202 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhccCCcc--ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 264 KILYPIFWGLMTLSTFGNDL--EPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFL 317 (585)
Q Consensus 264 ~Yl~slywa~~tlttvGyg~--~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il 317 (585)
.+..++++|+.|+||+|||. +++....-.++.++=+++|+++.|+++|-+-+=+
T Consensus 84 ~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~ 139 (336)
T PF01007_consen 84 SFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARF 139 (336)
T ss_dssp THHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999987 4455556666677888999999999998875544
No 33
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.42 E-value=0.0029 Score=65.23 Aligned_cols=89 Identities=12% Similarity=0.152 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007897 263 VKILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQ 342 (585)
Q Consensus 263 ~~Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~~m~~~~ 342 (585)
..|+.|+|....|.-++||||+.|.+...+..+++.-++|+++-|.+++-|+.= -+...--+.+++||-..+
T Consensus 286 ~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRK--------LeLt~aEKhVhNFMmDtq 357 (489)
T KOG3684|consen 286 INYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARK--------LELTKAEKHVHNFMMDTQ 357 (489)
T ss_pred HHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999888999999999999999999998887543 333333445677777777
Q ss_pred CCHHHHHHHHHHHHHHH
Q 007897 343 LPSRLRQRVRHYERQRW 359 (585)
Q Consensus 343 lp~~L~~rv~~y~~~~w 359 (585)
+-+++++-..+=++..|
T Consensus 358 LTk~~KnAAA~VLqeTW 374 (489)
T KOG3684|consen 358 LTKEHKNAAANVLQETW 374 (489)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 76666666655555555
No 34
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=97.39 E-value=0.0062 Score=57.47 Aligned_cols=96 Identities=8% Similarity=0.090 Sum_probs=73.0
Q ss_pred HHHHHHhhcceEEeCCCCEE-EccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhcccCCccCCCCc
Q 007897 404 ILDNICDRVRPLVYSKDEKI-IREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPA 482 (585)
Q Consensus 404 ~l~~l~~~l~~~~~~~ge~I-~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p~ 482 (585)
..+.+....++..+.+|..+ .......+..+++.+|.|.+.. .+| -.+.+......||-... ..+..
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr--~d~-ll~~t~~aP~IlGl~~~--------~~~~~- 81 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRR--EEN-VLIGITQAPYIMGLADG--------LMKND- 81 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEe--cCC-eEEEeccCCeEeecccc--------cCCCC-
Confidence 44556667778899999997 5444444779999999999943 445 44778888889998632 12222
Q ss_pred ceeEEEEecceEEEEecHHHHHHHHHHhh
Q 007897 483 SSATFVCMESIEAFGLDAKNLRYITDHFR 511 (585)
Q Consensus 483 ~~~tv~A~t~~~l~~l~~~~f~~ll~~~p 511 (585)
..+..+|.++|+++.+++++|.++++++.
T Consensus 82 ~~~~l~ae~~c~~~~i~~~~~~~iie~~~ 110 (207)
T PRK11832 82 IPYKLISEGNCTGYHLPAKQTITLIEQNQ 110 (207)
T ss_pred ceEEEEEcCccEEEEeeHHHHHHHHHHhc
Confidence 45789999999999999999999999876
No 35
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.36 E-value=0.0012 Score=72.92 Aligned_cols=103 Identities=11% Similarity=0.119 Sum_probs=85.0
Q ss_pred HHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeeccc-chhhcccCCccCCCCccee
Q 007897 408 ICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDE-LLSWCLRRPFIDRLPASSA 485 (585)
Q Consensus 408 l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~-~ll~~l~~~~~~~~p~~~~ 485 (585)
++.+++...+..||+|++.|++.+.+|.+.+|...+.....+|++. +....+|+.|-.. +++-.+. .+ .. +.++.
T Consensus 111 L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~~tSllSiLd~l~-~~-ps-~~~~i 187 (1158)
T KOG2968|consen 111 LDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGSFTSLLSILDSLP-GF-PS-LSRTI 187 (1158)
T ss_pred echhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCCCchHhHHHHHHhcc-CC-Cc-cccee
Confidence 4477888899999999999999999999999999999888889988 9999999777654 3332111 11 11 24778
Q ss_pred EEEEecceEEEEecHHHHHHHHHHhhHH
Q 007897 486 TFVCMESIEAFGLDAKNLRYITDHFRYK 513 (585)
Q Consensus 486 tv~A~t~~~l~~l~~~~f~~ll~~~p~~ 513 (585)
.++|.++|.+..++.+.|.++..+||+.
T Consensus 188 ~akA~t~~tv~~~p~~sF~~~~~k~P~s 215 (1158)
T KOG2968|consen 188 AAKAATDCTVARIPYTSFRESFHKNPES 215 (1158)
T ss_pred eeeeecCceEEEeccchhhhhhccChHH
Confidence 9999999999999999999999999953
No 36
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.07 E-value=0.0013 Score=70.43 Aligned_cols=56 Identities=20% Similarity=0.337 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 265 ILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAV 320 (585)
Q Consensus 265 Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~ 320 (585)
+..|+|++.+++||+|||++.|.+...++++|+..++|+-++..++++++..+...
T Consensus 116 f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~ 171 (433)
T KOG1418|consen 116 FSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADS 171 (433)
T ss_pred cchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999998889999999999999999999999999998664
No 37
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=96.99 E-value=0.051 Score=48.22 Aligned_cols=105 Identities=15% Similarity=0.165 Sum_probs=79.4
Q ss_pred CCcHHHHHHHHhh-cceEEeCCCCEEEccCCC-cCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhcccCCc
Q 007897 399 NLDDLILDNICDR-VRPLVYSKDEKIIREGDP-VPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPF 476 (585)
Q Consensus 399 ~~~~~~l~~l~~~-l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~ 476 (585)
+.|...-+.|+.+ .+.....+|+.-.-||.. .+.+-++++|++.+.. +|.. +..+.|.+|......-... +
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~---~g~f-LH~I~p~qFlDSPEW~s~~--~- 86 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSC---DGRF-LHYIYPYQFLDSPEWESLR--P- 86 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEE---CCEe-eEeecccccccChhhhccc--c-
Confidence 3566666777776 667899999999999864 4999999999999986 4554 6666777666554321110 1
Q ss_pred cCCCCcceeEEEEecceEEEEecHHHHHHHHHHhh
Q 007897 477 IDRLPASSATFVCMESIEAFGLDAKNLRYITDHFR 511 (585)
Q Consensus 477 ~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p 511 (585)
..+. .-..|+.|.++|..+..+|+.+..++.+.|
T Consensus 87 s~~~-~FQVTitA~~~Cryl~W~R~kL~~~l~~~~ 120 (153)
T PF04831_consen 87 SEDD-KFQVTITAEEDCRYLCWPREKLYLLLAKDP 120 (153)
T ss_pred CCCC-eEEEEEEEcCCcEEEEEEHHHHHHHHhhCH
Confidence 1222 378999999999999999999999999999
No 38
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=96.40 E-value=0.013 Score=59.37 Aligned_cols=56 Identities=11% Similarity=0.216 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhccCCccccCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 265 ILYPIFWGLMTLSTFGNDLEPTS--HWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAV 320 (585)
Q Consensus 265 Yl~slywa~~tlttvGyg~~~~~--~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~ 320 (585)
...++-|++-|=||+|||--..+ -..-.+..++=+++|+++-|+++|.+-+=++.-
T Consensus 113 f~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarP 170 (400)
T KOG3827|consen 113 FTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARP 170 (400)
T ss_pred hhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 46778899999999999864443 223344444667899999999999886655443
No 39
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=96.34 E-value=0.011 Score=63.48 Aligned_cols=112 Identities=15% Similarity=0.275 Sum_probs=87.1
Q ss_pred HHHHhhcCCCCCCCcHHHHHHHHhhcceE-EeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 387 CLDLIKKVPLFHNLDDLILDNICDRVRPL-VYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 387 ~~~~l~~v~~F~~~~~~~l~~l~~~l~~~-~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
..+++.+.|-|.+++-..-+++|..|-.. .-.+|.+|+..|+.-+.-+.|++|.|++.. ++|+. ..+.-|+.||.
T Consensus 279 LLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~--PdGk~--e~l~mGnSFG~ 354 (1283)
T KOG3542|consen 279 LLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVK--PDGKR--EELKMGNSFGA 354 (1283)
T ss_pred HHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEec--CCCce--EEeecccccCC
Confidence 36788889999999999999999987655 446899999999999999999999999988 67875 56778999998
Q ss_pred cchhhcccCCccCCCCcceeEE-EEecceEEEEecHHHHHHHHHHhh
Q 007897 466 ELLSWCLRRPFIDRLPASSATF-VCMESIEAFGLDAKNLRYITDHFR 511 (585)
Q Consensus 466 ~~ll~~l~~~~~~~~p~~~~tv-~A~t~~~l~~l~~~~f~~ll~~~p 511 (585)
. +..+..- ..--. .-+.+|+...+...|+-.++.+-.
T Consensus 355 ~--------PT~dkqy-m~G~mRTkVDDCqFVciaqqDycrIln~ve 392 (1283)
T KOG3542|consen 355 E--------PTPDKQY-MIGEMRTKVDDCQFVCIAQQDYCRILNTVE 392 (1283)
T ss_pred C--------CCcchhh-hhhhhheecccceEEEeehhhHHHHHHHHH
Confidence 6 2222211 11112 235679999999999999987543
No 40
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.10 E-value=0.043 Score=54.42 Aligned_cols=57 Identities=21% Similarity=0.295 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhhccCCccccCCc--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 264 KILYPIFWGLMTLSTFGNDLEPTSH--------WLEVMFSICIVLSGLMLFTLLIGNIQVFLHAV 320 (585)
Q Consensus 264 ~Yl~slywa~~tlttvGyg~~~~~~--------~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~ 320 (585)
.|+.|+|+.+.|+||+|+||..+.. ..=+.++.+.+++|+.+++-.++-+.--+..+
T Consensus 186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~ 250 (350)
T KOG4404|consen 186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTM 250 (350)
T ss_pred chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999999999876532 12356777888899988887776665544443
No 41
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=94.15 E-value=0.014 Score=57.69 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 264 KILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQ 314 (585)
Q Consensus 264 ~Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~ 314 (585)
+..-|+|||.+.+||+|||-.+|.|...++|+|+-.++|+-+--.++..++
T Consensus 80 kF~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~g 130 (350)
T KOG4404|consen 80 KFAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIG 130 (350)
T ss_pred ccCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHH
Confidence 456789999999999999999998999999999999999866555444443
No 42
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=94.02 E-value=0.067 Score=57.61 Aligned_cols=104 Identities=18% Similarity=0.239 Sum_probs=79.8
Q ss_pred chHHHHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEE
Q 007897 375 PEGLRRGIKRYLCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVAT 454 (585)
Q Consensus 375 p~~Lr~~i~~~~~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~ 454 (585)
|+.||.-.....-...+.+...|.++-..-+..++...+.+.++...++++.|+.+..-|++++|.|-+. |.
T Consensus 23 ~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~-----gq--- 94 (1283)
T KOG3542|consen 23 PPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVE-----GQ--- 94 (1283)
T ss_pred CcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEee-----cc---
Confidence 3444433333333346777888999999999999999999999999999999999999999999998864 32
Q ss_pred EecCCCCeecccchhhcccCCccCCCCcceeEEEEecceEEEEec
Q 007897 455 SVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLD 499 (585)
Q Consensus 455 ~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~ 499 (585)
.+-|-.+||.. .+.. |+.++-.+.++++.+++
T Consensus 95 -i~mp~~~fgkr-----------~g~~-r~~nclllq~semivid 126 (1283)
T KOG3542|consen 95 -IYMPYGCFGKR-----------TGQN-RTHNCLLLQESEMIVID 126 (1283)
T ss_pred -eecCccccccc-----------cccc-cccceeeecccceeeee
Confidence 35556677775 3333 88888889999998884
No 43
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=91.44 E-value=0.23 Score=52.36 Aligned_cols=34 Identities=15% Similarity=0.330 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhccCCccccCCchhhHHHHHHHH
Q 007897 266 LYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIV 299 (585)
Q Consensus 266 l~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~ 299 (585)
..|+|+.+.|.+||||||..|.-+.-.++.++++
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~sql~~vi~i 252 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILI 252 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchhhHHHHHHH
Confidence 4678999999999999999887655555444433
No 44
>PLN03223 Polycystin cation channel protein; Provisional
Probab=91.17 E-value=7.8 Score=46.20 Aligned_cols=102 Identities=15% Similarity=0.161 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HhcCCCHHHHHHHHHHHHH
Q 007897 290 LEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWM------------RRRQLPSRLRQRVRHYERQ 357 (585)
Q Consensus 290 ~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~~m------------~~~~lp~~L~~rv~~y~~~ 357 (585)
.-..|..+++++..++.-++|+.|...++.......+-...-.++-+|| ....+|+. ||++-++
T Consensus 1395 GPIYFfSFILLV~FILLNMFIAII~DSFsEVK~d~seq~s~e~EIvDfm~~rfrslL~g~~~~~~i~~~---~~~~~lr- 1470 (1634)
T PLN03223 1395 GMIYFYSYNIFVFMILFNFLLAIICDAFGEVKANAAETVSVHTELFPMLRDKWRSMFKGWFYKNHIPEA---RVRRQLR- 1470 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhhhcccccCCcH---HHHHHHH-
Confidence 3445667777777777778888777777665433222211122233333 33567765 4444444
Q ss_pred HHhhcCCC--C-------hhHHHhhCchHHHHHHHHHHHHHHhhcCC
Q 007897 358 RWATMGGE--D-------EMELIKDLPEGLRRGIKRYLCLDLIKKVP 395 (585)
Q Consensus 358 ~w~~~~~~--~-------~~~il~~Lp~~Lr~~i~~~~~~~~l~~v~ 395 (585)
.|+....- + .++++..+..+|-.+-.+.+.+..+...|
T Consensus 1471 ~w~ge~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~v~~~c~~~~~ 1517 (1634)
T PLN03223 1471 IWKGENPDEEEEEAFREEKEKVFTYLNKELDEAGLKRVLRRCVIETY 1517 (1634)
T ss_pred HhcCCCCCcccchhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 46542111 1 22466666666666666666666655544
No 45
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=90.69 E-value=0.053 Score=57.82 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhhccCCccccCCchhhH--------HHHHHHHHHHHHHHHHHH
Q 007897 264 KILYPIFWGLMTLSTFGNDLEPTSHWLEV--------MFSICIVLSGLMLFTLLI 310 (585)
Q Consensus 264 ~Yl~slywa~~tlttvGyg~~~~~~~~E~--------~~~i~~~i~G~~~fa~ii 310 (585)
-|+.|+|++++++||+|+||+.|.+.... ....+..++|...++.+.
T Consensus 242 ~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 242 SFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 57899999999999999999988875644 577788888888888776
No 46
>COG4709 Predicted membrane protein [Function unknown]
Probab=83.69 E-value=7.3 Score=35.99 Aligned_cols=75 Identities=20% Similarity=0.273 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh--cCCCChhHHHhhC--chHHHHHHHHHHHHHHhhcCCCCCCCcHHH
Q 007897 329 LRCRDMEWWMRRRQLPSRLRQRVRHYERQRWAT--MGGEDEMELIKDL--PEGLRRGIKRYLCLDLIKKVPLFHNLDDLI 404 (585)
Q Consensus 329 ~~~~~v~~~m~~~~lp~~L~~rv~~y~~~~w~~--~~~~~~~~il~~L--p~~Lr~~i~~~~~~~~l~~v~~F~~~~~~~ 404 (585)
+-++++++|++ ++|++.++.+..||+-.+.. ..|.+|+++..+| |.++-.|+..+.-.+-.+.-|-.++.+...
T Consensus 5 efL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~ai 82 (195)
T COG4709 5 EFLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRAI 82 (195)
T ss_pred HHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHHH
Confidence 34677888885 89999999999988766654 3567899999987 677777877777666666666676665544
Q ss_pred H
Q 007897 405 L 405 (585)
Q Consensus 405 l 405 (585)
+
T Consensus 83 i 83 (195)
T COG4709 83 I 83 (195)
T ss_pred H
Confidence 3
No 47
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=81.85 E-value=8.7 Score=35.82 Aligned_cols=56 Identities=23% Similarity=0.431 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh--cCCCChhHHHhhC--chHHHHHHHHHH
Q 007897 329 LRCRDMEWWMRRRQLPSRLRQRVRHYERQRWAT--MGGEDEMELIKDL--PEGLRRGIKRYL 386 (585)
Q Consensus 329 ~~~~~v~~~m~~~~lp~~L~~rv~~y~~~~w~~--~~~~~~~~il~~L--p~~Lr~~i~~~~ 386 (585)
+=+++++++++ ++|++-++++.+||+-.... ..|.+|+++.++| |.++-+++..+.
T Consensus 5 efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 5 EFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 33667888886 59999999999999877764 4577899999997 667767766554
No 48
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=77.73 E-value=8.3 Score=29.21 Aligned_cols=45 Identities=16% Similarity=0.249 Sum_probs=33.5
Q ss_pred EEeCCCCEEEccCCCcC-eEEEEeeeEEEEEEecCCCcEEEEecCCCCeec
Q 007897 415 LVYSKDEKIIREGDPVP-RMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLG 464 (585)
Q Consensus 415 ~~~~~ge~I~~~Gd~~~-~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fG 464 (585)
..++||+..-..-.... ++++|++|++.+.. +|. ...+++||.+=
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ 48 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV---DGE--RVELKPGDAIY 48 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEE---TTE--EEEEETTEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEE---ccE--EeEccCCEEEE
Confidence 46788887766665665 99999999999884 343 36788888663
No 49
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=76.78 E-value=22 Score=41.06 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=28.5
Q ss_pred hHHHHHHhHHHHHHHHHHHhhh-eeecCCcccccCCeeeechHHhHHhhhccccCeeehhh
Q 007897 33 VTVLRTCVDAVHLFHLWLQFRL-AYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVF 92 (585)
Q Consensus 33 ~~~~~~~~d~~f~~Di~l~F~t-~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~~~~F~~Dli 92 (585)
+++-|+|.-++|++++.++--. |.+- | -..|+++ .|=.+|.+
T Consensus 1158 ltlsnyIFtaIfV~Em~lKVVALGl~f--------g---------e~aYl~s-sWN~LDgf 1200 (1956)
T KOG2302|consen 1158 LTLSNYIFTAIFVVEMTLKVVALGLYF--------G---------EQAYLRS-SWNVLDGF 1200 (1956)
T ss_pred EEecchHHHHHHHHHHHHHHHhhhhcc--------c---------hHHHHHH-HHHhhhHH
Confidence 4555688889999999887532 4332 2 2579987 38778865
No 50
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=72.61 E-value=1.1e+02 Score=34.83 Aligned_cols=74 Identities=22% Similarity=0.368 Sum_probs=53.0
Q ss_pred hccCCccccCCc------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCHHHHH
Q 007897 277 STFGNDLEPTSH------WLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKK-RKMQLRCRDMEWWMRRRQLPSRLRQ 349 (585)
Q Consensus 277 ttvGyg~~~~~~------~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~-~~~~~~~~~v~~~m~~~~lp~~L~~ 349 (585)
.|+|+||.+..+ ..-.+|.++++++-+.++-++|+-|++........+ .+++.+--.+ -.|-++.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A~~-iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWAAT-ILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHHH-HHHHHhcCCHHHHH
Confidence 589998877643 234567777888888888899999998877765554 5555543333 25678999999998
Q ss_pred HH
Q 007897 350 RV 351 (585)
Q Consensus 350 rv 351 (585)
+-
T Consensus 680 ~~ 681 (782)
T KOG3676|consen 680 RF 681 (782)
T ss_pred HH
Confidence 83
No 51
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=70.50 E-value=8 Score=32.76 Aligned_cols=45 Identities=27% Similarity=0.366 Sum_probs=33.9
Q ss_pred cCCCHHHHHHHHHHHHHHHhh----------cCCCChhHHHhhCchHHHHHHHHH
Q 007897 341 RQLPSRLRQRVRHYERQRWAT----------MGGEDEMELIKDLPEGLRRGIKRY 385 (585)
Q Consensus 341 ~~lp~~L~~rv~~y~~~~w~~----------~~~~~~~~il~~Lp~~Lr~~i~~~ 385 (585)
.-||+++|..|...+...-.. ....|...++..||+.||++|...
T Consensus 51 ~ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 51 AALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 358999999999998754322 122345689999999999999754
No 52
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=64.77 E-value=26 Score=25.70 Aligned_cols=45 Identities=22% Similarity=0.212 Sum_probs=24.0
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 007897 292 VMFSI---CIVLSGLMLFTLLIGNIQVFLHAVMAKK---RKMQLRCRDMEWWMR 339 (585)
Q Consensus 292 ~~~~i---~~~i~G~~~fa~iig~i~~il~~~~~~~---~~~~~~~~~v~~~m~ 339 (585)
.++.+ .+.+++.+.|+. -|-.++++.+.++ ...++|++.+-+.+.
T Consensus 6 ~Iy~~~Vi~l~vl~~~~Ftl---~IRri~~~s~~kkq~~~~~eqKLDrIIeLLE 56 (58)
T PF13314_consen 6 LIYYILVIILIVLFGASFTL---FIRRILINSNAKKQDVDSMEQKLDRIIELLE 56 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHhccccccchhHHHHHHHHHHHHHc
Confidence 44444 333334444443 3445555533333 358888888877654
No 53
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=64.44 E-value=11 Score=29.48 Aligned_cols=31 Identities=10% Similarity=0.270 Sum_probs=25.4
Q ss_pred CeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 431 PRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 431 ~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
+++.+|++|.|.+.. ++|.. ..+++||.|=-
T Consensus 26 ~E~~~vleG~v~it~--~~G~~--~~~~aGD~~~~ 56 (74)
T PF05899_consen 26 DEFFYVLEGEVTITD--EDGET--VTFKAGDAFFL 56 (74)
T ss_dssp EEEEEEEEEEEEEEE--TTTEE--EEEETTEEEEE
T ss_pred CEEEEEEEeEEEEEE--CCCCE--EEEcCCcEEEE
Confidence 888999999999986 56765 77999998743
No 54
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=61.76 E-value=48 Score=28.82 Aligned_cols=68 Identities=10% Similarity=0.061 Sum_probs=42.0
Q ss_pred ceEEeCCCCEEEccCCCcCeEEEEeeeEEEEE-EecCCCcEEEEecCCCCeecccchhhcccCCccCCCCcceeEEEEec
Q 007897 413 RPLVYSKDEKIIREGDPVPRMVFIVRGRIKRC-QSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCME 491 (585)
Q Consensus 413 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~-~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t 491 (585)
....+.||..+-..-....++++|++|++.+. . .+|++ ..+.+||.+--. .+.| ..+++.+
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i--~~g~~--~~L~aGD~i~~~-----------~~~~---H~~~N~e 99 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDL--ATGEV--HPIRPGTMYALD-----------KHDR---HYLRAGE 99 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEc--CCCEE--EEeCCCeEEEEC-----------CCCc---EEEEcCC
Confidence 33567888755332222247999999999986 3 23544 679999987643 2222 3444447
Q ss_pred ceEEEEe
Q 007897 492 SIEAFGL 498 (585)
Q Consensus 492 ~~~l~~l 498 (585)
+++++.+
T Consensus 100 ~~~~l~v 106 (125)
T PRK13290 100 DMRLVCV 106 (125)
T ss_pred CEEEEEE
Confidence 7777655
No 55
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=59.33 E-value=38 Score=30.16 Aligned_cols=55 Identities=13% Similarity=0.152 Sum_probs=38.6
Q ss_pred cceEEeCCCCEEEccCCC-cCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeeccc
Q 007897 412 VRPLVYSKDEKIIREGDP-VPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDE 466 (585)
Q Consensus 412 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~ 466 (585)
+....+.||...-..-.. ..++++|++|+..+...+++|.+. ...+++||.+=-.
T Consensus 32 ~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip 88 (146)
T smart00835 32 AARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVP 88 (146)
T ss_pred EEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEEC
Confidence 445577888876555433 578999999999987654444333 6789999977543
No 56
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=58.22 E-value=41 Score=30.57 Aligned_cols=74 Identities=11% Similarity=0.148 Sum_probs=44.2
Q ss_pred ceEEe-CCCCEE-EccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhcccCCccCCCCcceeEEEEe
Q 007897 413 RPLVY-SKDEKI-IREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCM 490 (585)
Q Consensus 413 ~~~~~-~~ge~I-~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~ 490 (585)
+...+ .||+.- +.. +..+++|++++|.+.+-..+ +|+.....+++||+|=-- .+.| .+-++.
T Consensus 30 ~v~~vgGpn~R~d~H~-~~tdE~FyqleG~~~l~v~d-~g~~~~v~L~eGd~flvP-----------~gvp---HsP~r~ 93 (159)
T TIGR03037 30 MVTVVGGPNARTDFHD-DPGEEFFYQLKGEMYLKVTE-EGKREDVPIREGDIFLLP-----------PHVP---HSPQRP 93 (159)
T ss_pred EEEEeCCCCCCccccc-CCCceEEEEEcceEEEEEEc-CCcEEEEEECCCCEEEeC-----------CCCC---cccccC
Confidence 33444 444433 344 34799999999999986543 344335789999988543 1222 233344
Q ss_pred cceEEEEecHHH
Q 007897 491 ESIEAFGLDAKN 502 (585)
Q Consensus 491 t~~~l~~l~~~~ 502 (585)
.+|.++++.+..
T Consensus 94 ~~t~~LvIE~~r 105 (159)
T TIGR03037 94 AGSIGLVIERKR 105 (159)
T ss_pred CCcEEEEEEeCC
Confidence 666677666554
No 57
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=53.96 E-value=51 Score=31.70 Aligned_cols=74 Identities=20% Similarity=0.265 Sum_probs=46.8
Q ss_pred cceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhcccCCccCCCC--------cc
Q 007897 412 VRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLP--------AS 483 (585)
Q Consensus 412 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p--------~~ 483 (585)
++...+.+|+..-.+-...+...+++.|++.+... | +.||++ ..+.+.|++.| .+
T Consensus 31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~~---g----------~~f~~i----G~R~SvFe~~p~~~vYvp~g~ 93 (270)
T COG3718 31 FRLLRLAAGESATEETGDRERCLVLVTGKATVSAH---G----------STFGEI----GTRMSVFERKPPDSVYVPAGS 93 (270)
T ss_pred EEEEEccCCCcccccCCCceEEEEEEeeeEEEeec---c----------chHhhc----ccccccccCCCCCeEEecCCc
Confidence 45566788888776666667778889999988652 2 222222 11112222211 37
Q ss_pred eeEEEEecceEEEEecHHH
Q 007897 484 SATFVCMESIEAFGLDAKN 502 (585)
Q Consensus 484 ~~tv~A~t~~~l~~l~~~~ 502 (585)
.+++.|.+++++..-+.-.
T Consensus 94 ~~~vtA~t~~~vAvC~AP~ 112 (270)
T COG3718 94 AFSVTATTDLEVAVCSAPG 112 (270)
T ss_pred eEEEEeecceEEEEEeCCC
Confidence 8899999999988877654
No 58
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=53.30 E-value=4.4e+02 Score=30.99 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=30.7
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCCCChhHHHhhCchHHHHHHHHHHHH
Q 007897 341 RQLPSRLRQRVRHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCL 388 (585)
Q Consensus 341 ~~lp~~L~~rv~~y~~~~w~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~ 388 (585)
.++|+.|+.+|..+.....- ..-.+++.++++...++...+..
T Consensus 357 ~~Lp~~Lr~~i~~~l~~~~l-----~~~~lF~~~s~~~l~~L~~~~~~ 399 (823)
T PLN03192 357 DQLPKSICKSICQHLFLPVV-----EKVYLFKGVSREILLLLVTKMKA 399 (823)
T ss_pred HHcCHHHHHHHHHHHHHHHH-----hhCcchhcCCHHHHHHHHHhhhe
Confidence 47899999999887754332 23357888888888887766643
No 59
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=52.59 E-value=1.9e+02 Score=36.34 Aligned_cols=50 Identities=14% Similarity=0.230 Sum_probs=35.3
Q ss_pred cchhhhHHHHHHhHHHHHHHHHHHhhheeecCCcccccCCeeeechHHhHHhhhccccCeeehhhhccCcce
Q 007897 28 ALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQ 99 (585)
Q Consensus 28 ~~~~~~~~~~~~~d~~f~~Di~l~F~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~~~~F~~Dlis~lP~~~ 99 (585)
+....+++.+.+.-.+|..++.+..- ..+ -+.|+++ +|-++|.+-+. ++.
T Consensus 470 ~~~~~l~~~~~vF~~lF~~Em~~ki~--al~------------------~~~yF~~-~~n~fD~~iv~-l~~ 519 (1592)
T KOG2301|consen 470 ARNYLLYLGNVVFTGLFTVEMILKIY--ALG------------------PRNYFRR-GWNIFDLIIVL-LSL 519 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HcC------------------cHHHHhh-hcchheEEEEe-hhh
Confidence 34555667778888888888887642 233 3678888 69999998777 444
No 60
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=46.58 E-value=42 Score=21.88 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCCC-----HHHHHHHHHHH
Q 007897 330 RCRDMEWWMRRRQLP-----SRLRQRVRHYE 355 (585)
Q Consensus 330 ~~~~v~~~m~~~~lp-----~~L~~rv~~y~ 355 (585)
+..++.++++.+++| .+|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 456788999999998 47899988874
No 61
>KOG2378 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=44.55 E-value=22 Score=37.45 Aligned_cols=43 Identities=23% Similarity=0.348 Sum_probs=34.7
Q ss_pred CCCeecccchhhcccCCccCCCCcceeEEEEec-ceEEEEecHHHHHHHHHHh
Q 007897 459 PGGFLGDELLSWCLRRPFIDRLPASSATFVCME-SIEAFGLDAKNLRYITDHF 510 (585)
Q Consensus 459 ~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t-~~~l~~l~~~~f~~ll~~~ 510 (585)
+||-||..++ ....| |.+++...+ +|..++.++.+|++++++-
T Consensus 1 eGddfgklal--------vnd~p-raativl~ed~~~fl~vDk~~Fn~I~~~v 44 (573)
T KOG2378|consen 1 EGDDFGKLAL--------VNDAP-RAATIVLREDNCHFLRVDKHDFNRILHDV 44 (573)
T ss_pred CCcccchhcc--------ccccc-cccceeeecCCCcceeecHHHHHHHHHhh
Confidence 5899999876 34556 777777766 4999999999999999764
No 62
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=43.82 E-value=66 Score=27.92 Aligned_cols=48 Identities=13% Similarity=0.194 Sum_probs=34.8
Q ss_pred hcceEEeCCCCEE-EccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCee
Q 007897 411 RVRPLVYSKDEKI-IREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFL 463 (585)
Q Consensus 411 ~l~~~~~~~ge~I-~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~f 463 (585)
..+...+.||+-+ .+.-...+++|+|++|...+.. +|++ ..+++||.+
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~---~~~~--~~v~~gd~~ 85 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI---GGEE--VEVKAGDSV 85 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE---CCEE--EEecCCCEE
Confidence 4556777888875 4444457999999999999986 2433 567888765
No 63
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=43.77 E-value=1.1e+02 Score=28.87 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=35.4
Q ss_pred ceEEeCCCCEE---------EccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeec
Q 007897 413 RPLVYSKDEKI---------IREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLG 464 (585)
Q Consensus 413 ~~~~~~~ge~I---------~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fG 464 (585)
-...+.||... +.+.....++|++++|+..+...+.+|......+.+|+.+=
T Consensus 71 g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~ 131 (191)
T PRK04190 71 GTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVY 131 (191)
T ss_pred EEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEE
Confidence 34566777743 33333346999999999998876566654467789998764
No 64
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=43.74 E-value=62 Score=33.92 Aligned_cols=53 Identities=6% Similarity=-0.062 Sum_probs=38.3
Q ss_pred ceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 413 RPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 413 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
....+.||...--.-....++.++++|++++...+.+|+.....+++||.+=-
T Consensus 70 ~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~f 122 (367)
T TIGR03404 70 VNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYF 122 (367)
T ss_pred eEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEE
Confidence 34566777755332234578999999999998876677765668999998743
No 65
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=42.66 E-value=2.7e+02 Score=32.15 Aligned_cols=55 Identities=24% Similarity=0.432 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhccCCccccC-C----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 266 LYPIFWGLMTLSTFGNDLEPT-S----HWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAV 320 (585)
Q Consensus 266 l~slywa~~tlttvGyg~~~~-~----~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~ 320 (585)
..+++|++-+++-++--+++. . ++++.+|.+-.++.=+++.-++|+.|.+-.|.+
T Consensus 555 ~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeI 614 (822)
T KOG3609|consen 555 SKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEI 614 (822)
T ss_pred HHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHH
Confidence 478999998887665533222 2 234444444444444444444555444444433
No 66
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=42.18 E-value=97 Score=28.69 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=40.2
Q ss_pred CCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhcccCCccCCCCcceeEEEEecceEEEEecHHHHH
Q 007897 428 DPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLR 504 (585)
Q Consensus 428 d~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~ 504 (585)
+..++++++++|.+.+...+ +|+.....+++||+|=-- .+.| .+-++..+|..+++.+..-.
T Consensus 52 ~~tdE~FyqleG~~~l~v~d-~g~~~~v~L~eGd~fllP-----------~gvp---HsP~r~~~tv~LviE~~r~~ 113 (177)
T PRK13264 52 DPGEEFFYQLEGDMYLKVQE-DGKRRDVPIREGEMFLLP-----------PHVP---HSPQREAGSIGLVIERKRPE 113 (177)
T ss_pred CCCceEEEEECCeEEEEEEc-CCceeeEEECCCCEEEeC-----------CCCC---cCCccCCCeEEEEEEeCCCC
Confidence 56799999999998887653 454235789999988443 2222 22233566777777655443
No 67
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=41.58 E-value=66 Score=27.13 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHHHHhhc---------CCC----ChhHHHhhCchHHHHHHHHHHHHHHh
Q 007897 342 QLPSRLRQRVRHYERQRWATM---------GGE----DEMELIKDLPEGLRRGIKRYLCLDLI 391 (585)
Q Consensus 342 ~lp~~L~~rv~~y~~~~w~~~---------~~~----~~~~il~~Lp~~Lr~~i~~~~~~~~l 391 (585)
-||.++|.+|..-+...-... ... -..++|..||+++|.+|........-
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~~~ 70 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRERR 70 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 478999988855443321100 000 13489999999999999888766543
No 68
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=40.62 E-value=30 Score=30.50 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007897 262 AVKILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRR 341 (585)
Q Consensus 262 ~~~Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~~m~~~ 341 (585)
......++++.+.+++.-|. ...|.+...+++.++..++++++.+.--|++++++.... ++..++.+++..+..
T Consensus 42 ~~~~~~~~~~~~~~~~~q~~-~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~-----~~~~i~sl~dL~~~~ 115 (148)
T PF00060_consen 42 RFSLSNSFWYTFGTLLQQGS-SIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPK-----YEPPIDSLEDLANSG 115 (148)
T ss_dssp HHHHHHHHHHCCCCCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HTSS-SSHHHHHTHS
T ss_pred cccHHHHHHHHHHhhccccc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----cCCCCCCHHHHHHCC
Confidence 34566778877777765343 455666799999999999999999999999999876532 233355566555554
No 69
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=40.56 E-value=1.7e+02 Score=30.79 Aligned_cols=66 Identities=12% Similarity=0.174 Sum_probs=46.5
Q ss_pred chhHHHHHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 259 NSVAVKILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKK 324 (585)
Q Consensus 259 ~~~~~~Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~ 324 (585)
....--|+.++=+++..+.+++-+.....-..-..+++++.+++++.|-+.|..++..++--+.-.
T Consensus 95 q~vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ii~ 160 (371)
T PF10011_consen 95 QVVLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVSNIIA 160 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 334456888898999988888764431111133888888888999999999999888876544333
No 70
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=38.68 E-value=1.8e+02 Score=36.52 Aligned_cols=44 Identities=20% Similarity=0.427 Sum_probs=32.2
Q ss_pred hhhHHHHHHhHHHHHHHHHHHhhheeecCCcccccCCeeeechHHhHHhhhccccCeeehhhhcc
Q 007897 31 AIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVIL 95 (585)
Q Consensus 31 ~~~~~~~~~~d~~f~~Di~l~F~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~~~~F~~Dlis~l 95 (585)
..+...|.+.-.+|.+.+++..-. .|-. -|++. .|.++|++.+.
T Consensus 872 ~~L~y~D~~Ft~iFt~Em~lK~ia-----------~Gf~---------~y~rn-~w~~lDf~Vv~ 915 (1592)
T KOG2301|consen 872 GILEYADYIFTYIFTFEMLLKWIA-----------YGFF---------FYFRN-AWNWLDFVVVI 915 (1592)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-----------hHHH---------HHHhh-HHhhhhHHHhh
Confidence 345678899999999999998532 2422 29998 49999998543
No 71
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=38.22 E-value=71 Score=27.70 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=39.6
Q ss_pred cceEEeCCCCEEEccCCC-cCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeeccc
Q 007897 412 VRPLVYSKDEKIIREGDP-VPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDE 466 (585)
Q Consensus 412 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~ 466 (585)
.....+.||..+-..-.+ .+...+|++|++++... |.. ..+.+||++-..
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~---g~~--~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE---GEK--KELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEec---CCc--eEecCCCEEEEC
Confidence 345678889888887776 77999999999998862 443 679999998765
No 72
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=36.80 E-value=1.1e+02 Score=29.17 Aligned_cols=59 Identities=22% Similarity=0.376 Sum_probs=38.3
Q ss_pred hhCchHHHHHHHHHHHHHHhhcCCCC-CCCcHHHHHHHHhhcceEE--eCCCCEEEccCCCcC
Q 007897 372 KDLPEGLRRGIKRYLCLDLIKKVPLF-HNLDDLILDNICDRVRPLV--YSKDEKIIREGDPVP 431 (585)
Q Consensus 372 ~~Lp~~Lr~~i~~~~~~~~l~~v~~F-~~~~~~~l~~l~~~l~~~~--~~~ge~I~~~Gd~~~ 431 (585)
..+|+. ...+...+...+++=.-.| ...++...++......+.. +.+||.|+++|+..+
T Consensus 146 ~~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 146 SNLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred cCCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 344555 3444444444443322233 3456677778888888888 999999999999764
No 73
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=36.45 E-value=35 Score=25.03 Aligned_cols=18 Identities=39% Similarity=0.868 Sum_probs=16.1
Q ss_pred HHHhhCchHHHHHHHHHH
Q 007897 369 ELIKDLPEGLRRGIKRYL 386 (585)
Q Consensus 369 ~il~~Lp~~Lr~~i~~~~ 386 (585)
+++++||.+|++++...+
T Consensus 6 elfqkLPDdLKrEvldY~ 23 (65)
T COG5559 6 ELFQKLPDDLKREVLDYI 23 (65)
T ss_pred HHHHHCcHHHHHHHHHHH
Confidence 688999999999998776
No 74
>PF11151 DUF2929: Protein of unknown function (DUF2929); InterPro: IPR021324 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=36.36 E-value=23 Score=26.17 Aligned_cols=18 Identities=22% Similarity=0.578 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhhccCC
Q 007897 264 KILYPIFWGLMTLSTFGN 281 (585)
Q Consensus 264 ~Yl~slywa~~tlttvGy 281 (585)
||+.+++|++.-.--+||
T Consensus 2 kyivt~fWs~il~~vvgy 19 (57)
T PF11151_consen 2 KYIVTFFWSFILGEVVGY 19 (57)
T ss_pred cEEehhHHHHHHHHHHHH
Confidence 688999999887777888
No 75
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=35.66 E-value=98 Score=32.46 Aligned_cols=53 Identities=9% Similarity=0.030 Sum_probs=37.9
Q ss_pred cceEEeCCCCEEEccCCC-cCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeec
Q 007897 412 VRPLVYSKDEKIIREGDP-VPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLG 464 (585)
Q Consensus 412 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fG 464 (585)
+....+.||...-..=-+ .+++++|++|++++...+.+|......+++||.+=
T Consensus 247 ~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~ 300 (367)
T TIGR03404 247 AAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGY 300 (367)
T ss_pred EEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEE
Confidence 455667788766544434 57999999999999865555654456799999653
No 76
>PRK11171 hypothetical protein; Provisional
Probab=35.20 E-value=1.5e+02 Score=29.59 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=33.0
Q ss_pred ceEEeCCCCEEEccCC--CcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 413 RPLVYSKDEKIIREGD--PVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 413 ~~~~~~~ge~I~~~Gd--~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
....+.||...-.... ..+++++|++|++.+.. +|++ ..+.+||.+=-
T Consensus 64 ~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~---~g~~--~~L~~GDsi~~ 113 (266)
T PRK11171 64 YLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL---EGKT--HALSEGGYAYL 113 (266)
T ss_pred EEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE---CCEE--EEECCCCEEEE
Confidence 4456778775433332 23789999999999875 3544 67999997743
No 77
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=32.87 E-value=72 Score=25.16 Aligned_cols=38 Identities=21% Similarity=0.449 Sum_probs=28.7
Q ss_pred HHHhhCchHHHHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhcce
Q 007897 369 ELIKDLPEGLRRGIKRYLCLDLIKKVPLFHNLDDLILDNICDRVRP 414 (585)
Q Consensus 369 ~il~~Lp~~Lr~~i~~~~~~~~l~~v~~F~~~~~~~l~~l~~~l~~ 414 (585)
++|..||+++|.++...+ --+...+++.++.+...++.
T Consensus 31 ~VL~~lp~e~r~~v~~Ri--------a~~~~v~~~~i~~ie~~L~~ 68 (79)
T PF14841_consen 31 EVLSQLPEELRAEVVRRI--------ARLESVSPEVIEEIEEVLEE 68 (79)
T ss_dssp HHHHTS-HHHHHHHHHHH--------HTCCCCSHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHH--------HccCCCCHHHHHHHHHHHHH
Confidence 689999999999888666 45677888888887776543
No 78
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=30.71 E-value=79 Score=28.31 Aligned_cols=46 Identities=17% Similarity=0.292 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHh
Q 007897 295 SICIVLSGLMLFTLLIGNIQVFLHAV-------------MAKKRKMQLRCRDMEWWMRR 340 (585)
Q Consensus 295 ~i~~~i~G~~~fa~iig~i~~il~~~-------------~~~~~~~~~~~~~v~~~m~~ 340 (585)
.+++.++|+.+||++++.+.+.-... .-..++|+.+++...+.++.
T Consensus 9 ~lLi~vIglAL~aFIv~d~~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k~ 67 (145)
T PF13623_consen 9 GLLIIVIGLALFAFIVGDFRSGSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYKQ 67 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHHH
Confidence 36788999999999998774432211 12456788888888766653
No 79
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=30.59 E-value=2e+02 Score=20.32 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 293 MFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDM 334 (585)
Q Consensus 293 ~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v 334 (585)
.++.+.++..++....+.+.+.++-.++.....+++..-+++
T Consensus 8 ~~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d~ 49 (53)
T PF01484_consen 8 VVSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDDA 49 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666777777777777777777777666554
No 80
>PRK11171 hypothetical protein; Provisional
Probab=27.87 E-value=1.5e+02 Score=29.41 Aligned_cols=50 Identities=12% Similarity=0.122 Sum_probs=38.7
Q ss_pred hcceEEeCCCCEEEcc-CCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 411 RVRPLVYSKDEKIIRE-GDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 411 ~l~~~~~~~ge~I~~~-Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
.+....+.||..+-.. .....+.++|++|+..+.. +|++ ..+.+||+.--
T Consensus 185 ~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~---~~~~--~~l~~GD~i~~ 235 (266)
T PRK11171 185 HVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL---NNDW--VEVEAGDFIWM 235 (266)
T ss_pred EEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE---CCEE--EEeCCCCEEEE
Confidence 4666789999998774 5666899999999999865 4544 67999997643
No 81
>PRK06771 hypothetical protein; Provisional
Probab=27.25 E-value=3.5e+02 Score=22.18 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 307 TLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMR 339 (585)
Q Consensus 307 a~iig~i~~il~~~~~~~~~~~~~~~~v~~~m~ 339 (585)
-|+...++.+....+.+....+.+++.+.+.+-
T Consensus 15 i~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~G 47 (93)
T PRK06771 15 IYIVEKLTKIEKKTDARLKRMEDRLQLITKEMG 47 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345556666666676777777777766655543
No 82
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=27.11 E-value=1.9e+02 Score=26.81 Aligned_cols=45 Identities=13% Similarity=0.057 Sum_probs=29.3
Q ss_pred EeCCCCEEEcc-CCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 416 VYSKDEKIIRE-GDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 416 ~~~~ge~I~~~-Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
.+.||...-.. -..+.++.+|++|++.+.. +|+. ..+.+||.+=-
T Consensus 113 ~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~---~~~~--~~l~~Gd~~~~ 158 (185)
T PRK09943 113 TYQPGTTTGERIKHQGEEIGTVLEGEIVLTI---NGQD--YHLVAGQSYAI 158 (185)
T ss_pred EccCCCCcccccccCCcEEEEEEEeEEEEEE---CCEE--EEecCCCEEEE
Confidence 45566532111 1244799999999999875 3433 67999997643
No 83
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=26.94 E-value=3.8e+02 Score=30.83 Aligned_cols=41 Identities=24% Similarity=0.430 Sum_probs=33.1
Q ss_pred hhCchHHHHHHHHHHHHHHhh-----cCCCCCCCcHHHHHHHHhhc
Q 007897 372 KDLPEGLRRGIKRYLCLDLIK-----KVPLFHNLDDLILDNICDRV 412 (585)
Q Consensus 372 ~~Lp~~Lr~~i~~~~~~~~l~-----~v~~F~~~~~~~l~~l~~~l 412 (585)
.+||++||+.|..+...+... .-.+++++|++.-++|+.++
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL 416 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHL 416 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHH
Confidence 479999999999999776654 34577889998888888765
No 84
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=26.27 E-value=1.9e+02 Score=23.18 Aligned_cols=64 Identities=22% Similarity=0.265 Sum_probs=42.9
Q ss_pred hcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhcccCCccCCCCcceeEEEEe
Q 007897 411 RVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCM 490 (585)
Q Consensus 411 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~ 490 (585)
......+.||..+=...-.+.+..||++|.... .+| .+.+|++.=.. |.+..+..+.
T Consensus 25 ~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d----~~~-----~~~~G~~~~~p--------------~g~~h~~~s~ 81 (91)
T PF12973_consen 25 RVSLLRLEPGASLPRHRHPGGEEILVLEGELSD----GDG-----RYGAGDWLRLP--------------PGSSHTPRSD 81 (91)
T ss_dssp EEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE----TTC-----EEETTEEEEE---------------TTEEEEEEES
T ss_pred EEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE----CCc-----cCCCCeEEEeC--------------CCCccccCcC
Confidence 345567889988887777788888999998872 222 25777776443 1255677788
Q ss_pred cceEEEE
Q 007897 491 ESIEAFG 497 (585)
Q Consensus 491 t~~~l~~ 497 (585)
+.|.++.
T Consensus 82 ~gc~~~v 88 (91)
T PF12973_consen 82 EGCLILV 88 (91)
T ss_dssp SCEEEEE
T ss_pred CCEEEEE
Confidence 8888875
No 85
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=24.85 E-value=94 Score=20.45 Aligned_cols=23 Identities=22% Similarity=0.324 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHHHhhccCC
Q 007897 530 WRTWAAVNIQFAWRRYRMRTRGP 552 (585)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~r~~~~ 552 (585)
.+-+|+.+|++-|++.++|+...
T Consensus 7 GK~YAt~lI~dyfr~~K~rk~~~ 29 (35)
T PF08763_consen 7 GKFYATLLIQDYFRQFKKRKEQE 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999887644
No 86
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=24.36 E-value=2.8e+02 Score=26.59 Aligned_cols=56 Identities=21% Similarity=0.273 Sum_probs=36.6
Q ss_pred cCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhcccCCccCCCCcceeEEE--EecceEEEEecH
Q 007897 426 EGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFV--CMESIEAFGLDA 500 (585)
Q Consensus 426 ~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~--A~t~~~l~~l~~ 500 (585)
.++..+.+.||++|++.+.. .|+. ..+.+|++-=-- |.+..+++ +.+++++..+.+
T Consensus 79 ~d~~ae~~lfVv~Ge~tv~~---~G~t--h~l~eggyaylP--------------pgs~~~~~N~~~~~~rfhw~rk 136 (264)
T COG3257 79 GDEGAETFLFVVSGEITVKA---EGKT--HALREGGYAYLP--------------PGSGWTLRNAQKEDSRFHWIRK 136 (264)
T ss_pred CCCcceEEEEEEeeeEEEEE---cCeE--EEeccCCeEEeC--------------CCCcceEeeccCCceEEEEEee
Confidence 34456889999999999875 4654 678888764211 11233444 677777777754
No 87
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=24.17 E-value=1.9e+02 Score=28.59 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=30.6
Q ss_pred eEEeCCCCEEEcc-CCCc-CeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 414 PLVYSKDEKIIRE-GDPV-PRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 414 ~~~~~~ge~I~~~-Gd~~-~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
...+.||.-.-.. ...+ +++.+|++|++.+.. +|+. ..|++||++=-
T Consensus 62 ~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~---~g~~--~~L~~Gd~~y~ 110 (260)
T TIGR03214 62 IVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTA---EGET--HELREGGYAYL 110 (260)
T ss_pred EEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEE---CCEE--EEECCCCEEEE
Confidence 3455665433211 1233 789999999999875 3443 58999998744
No 88
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=22.28 E-value=6.3e+02 Score=23.35 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=40.0
Q ss_pred hhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCCH
Q 007897 276 LSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNI-QVFLHAVM--AKKRKMQLRCRDMEWWMRRRQLPS 345 (585)
Q Consensus 276 lttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i-~~il~~~~--~~~~~~~~~~~~v~~~m~~~~lp~ 345 (585)
+++.-.|...+.=-.+-++.+.++.+++...|+++|-. ++.+=.+. +...++..|-.+.-+=++++++++
T Consensus 60 l~~~~~D~~~~I~GlDP~~~~g~~t~a~g~lG~L~GP~~G~~vf~l~~r~~~~~~~~Ke~eF~~rIkknRvDp 132 (173)
T PF08566_consen 60 LSTIEIDPTQQIMGLDPFMVYGLATLACGALGWLVGPSLGNQVFRLLNRKYLKQMDAKEKEFLARIKKNRVDP 132 (173)
T ss_pred HhhccccccccccCcCHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 34444443333323678889999999999999999864 33332222 223344444444444455555554
No 89
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=22.08 E-value=1.4e+02 Score=27.00 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=32.1
Q ss_pred EEeCCCCE--EEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeeccc
Q 007897 415 LVYSKDEK--IIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDE 466 (585)
Q Consensus 415 ~~~~~ge~--I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~ 466 (585)
...+||-- ...--...++++.|++|+..+.. ++.+ ..+++||+.|--
T Consensus 47 ~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~---d~~e--~~lrpGD~~gFp 95 (161)
T COG3837 47 EIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE---DGGE--TRLRPGDSAGFP 95 (161)
T ss_pred EEeCCCCccccccccccCceEEEEEcCceEEEE---CCee--EEecCCceeecc
Confidence 34455432 23333456899999999998875 3444 579999998865
No 90
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=21.80 E-value=1.2e+02 Score=19.59 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCCCH-----HHHHHHHHH
Q 007897 331 CRDMEWWMRRRQLPS-----RLRQRVRHY 354 (585)
Q Consensus 331 ~~~v~~~m~~~~lp~-----~L~~rv~~y 354 (585)
..++.+.++.+++|. +|++|+.+|
T Consensus 6 ~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~ 34 (35)
T smart00513 6 VSELKDELKKRGLSTSGTKAELVDRLLEA 34 (35)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 456788889888884 578887776
No 91
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=21.42 E-value=1.2e+02 Score=20.05 Aligned_cols=15 Identities=20% Similarity=0.729 Sum_probs=11.8
Q ss_pred HHHHHHHHhcCCCHH
Q 007897 332 RDMEWWMRRRQLPSR 346 (585)
Q Consensus 332 ~~v~~~m~~~~lp~~ 346 (585)
+++.+|++.+++|..
T Consensus 7 ~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVP 21 (38)
T ss_pred HHHHHHHHHcCCCCC
Confidence 578889999888743
No 92
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=20.59 E-value=1.1e+02 Score=17.09 Aligned_cols=16 Identities=50% Similarity=0.717 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhhc
Q 007897 534 AAVNIQFAWRRYRMRT 549 (585)
Q Consensus 534 ~~~~~~~~~~~~~~r~ 549 (585)
++..+|..||.+..|+
T Consensus 3 aai~iQ~~~R~~~~Rk 18 (21)
T PF00612_consen 3 AAIIIQSYWRGYLARK 18 (21)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5778899998887654
Done!