Query 007897
Match_columns 585
No_of_seqs 371 out of 2913
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 13:12:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007897.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007897hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ukn_A Novel protein similar t 100.0 7.5E-33 2.6E-37 266.7 17.7 200 314-528 1-202 (212)
2 2ptm_A Hyperpolarization-activ 100.0 4.9E-32 1.7E-36 258.1 22.0 189 319-521 2-190 (198)
3 3beh_A MLL3241 protein; transm 100.0 1.5E-33 5.2E-38 293.3 8.2 184 262-519 159-342 (355)
4 3bpz_A Potassium/sodium hyperp 100.0 2.3E-31 7.7E-36 254.3 20.0 180 318-511 2-181 (202)
5 4f8a_A Potassium voltage-gated 99.8 2.3E-19 7.8E-24 163.7 15.6 141 367-521 5-147 (160)
6 1orq_C Potassium channel; volt 99.8 2E-20 6.9E-25 181.1 8.4 184 26-319 34-220 (223)
7 3gyd_A CNMP-BD protein, cyclic 99.8 6.3E-18 2.2E-22 158.9 16.3 151 367-527 13-168 (187)
8 3ocp_A PRKG1 protein; serine/t 99.7 1.1E-17 3.9E-22 148.8 11.3 126 373-511 7-132 (139)
9 3mdp_A Cyclic nucleotide-bindi 99.7 1.7E-17 5.7E-22 147.9 12.2 129 389-527 6-138 (142)
10 2pqq_A Putative transcriptiona 99.7 8.4E-17 2.9E-21 144.5 16.5 115 388-511 4-119 (149)
11 2r9r_B Paddle chimera voltage 99.7 4.8E-18 1.6E-22 183.3 8.1 250 29-388 237-490 (514)
12 4ev0_A Transcription regulator 99.7 2E-16 6.9E-21 151.6 17.3 148 391-548 1-149 (216)
13 2z69_A DNR protein; beta barre 99.7 1.4E-16 4.9E-21 143.9 14.5 124 388-520 11-135 (154)
14 3dn7_A Cyclic nucleotide bindi 99.7 6.1E-17 2.1E-21 152.7 12.4 129 388-526 6-136 (194)
15 3idb_B CAMP-dependent protein 99.7 8.1E-17 2.8E-21 147.1 12.3 122 380-511 29-151 (161)
16 3d0s_A Transcriptional regulat 99.7 2.4E-16 8E-21 152.5 13.6 129 388-526 5-134 (227)
17 3dv8_A Transcriptional regulat 99.7 7.5E-16 2.6E-20 148.0 16.3 128 389-526 3-133 (220)
18 3e97_A Transcriptional regulat 99.7 8.8E-16 3E-20 148.9 16.1 129 388-526 5-134 (231)
19 3fx3_A Cyclic nucleotide-bindi 99.7 2.8E-16 9.7E-21 153.0 11.9 130 387-526 9-139 (237)
20 3iwz_A CAP-like, catabolite ac 99.7 1.9E-15 6.4E-20 146.3 17.3 131 388-527 10-146 (230)
21 3dkw_A DNR protein; CRP-FNR, H 99.6 5.3E-16 1.8E-20 149.9 12.3 151 388-547 8-159 (227)
22 3shr_A CGMP-dependent protein 99.6 1.8E-15 6.1E-20 152.8 15.9 130 369-511 19-148 (299)
23 1zyb_A Transcription regulator 99.6 5.5E-16 1.9E-20 150.7 11.1 129 388-525 17-148 (232)
24 1vp6_A CNBD, cyclic-nucleotide 99.6 9.7E-16 3.3E-20 135.8 11.2 122 388-525 10-131 (138)
25 1wgp_A Probable cyclic nucleot 99.6 4.6E-16 1.6E-20 137.8 8.0 117 389-511 6-130 (137)
26 3pna_A CAMP-dependent protein 99.6 2E-15 6.9E-20 136.8 12.2 114 385-511 34-147 (154)
27 2gau_A Transcriptional regulat 99.6 1.6E-15 5.3E-20 147.2 12.0 125 392-526 13-138 (232)
28 4ava_A Lysine acetyltransferas 99.6 2.7E-15 9.4E-20 153.9 14.4 122 388-520 12-133 (333)
29 3ryp_A Catabolite gene activat 99.6 1E-14 3.5E-19 139.0 16.2 123 395-527 2-126 (210)
30 2d93_A RAP guanine nucleotide 99.6 4.8E-16 1.6E-20 137.4 6.3 123 376-511 3-127 (134)
31 2oz6_A Virulence factor regula 99.6 1.9E-14 6.5E-19 136.8 16.9 118 400-527 1-123 (207)
32 2qcs_B CAMP-dependent protein 99.6 2.8E-14 9.5E-19 143.3 16.0 125 386-520 154-280 (291)
33 3shr_A CGMP-dependent protein 99.6 5.4E-15 1.9E-19 149.3 9.5 127 385-521 153-281 (299)
34 2fmy_A COOA, carbon monoxide o 99.6 1.1E-14 3.9E-19 139.9 10.9 122 389-528 4-126 (220)
35 3kcc_A Catabolite gene activat 99.5 6.5E-14 2.2E-18 138.5 16.1 120 398-527 55-176 (260)
36 1o5l_A Transcriptional regulat 99.5 2.7E-14 9.3E-19 136.7 12.1 122 394-525 4-127 (213)
37 3vou_A ION transport 2 domain 99.5 9.1E-14 3.1E-18 124.8 14.6 86 265-350 53-148 (148)
38 1ft9_A Carbon monoxide oxidati 99.5 1.3E-14 4.6E-19 139.7 9.8 144 390-551 1-145 (222)
39 2qcs_B CAMP-dependent protein 99.5 9.7E-14 3.3E-18 139.3 15.5 127 384-524 34-160 (291)
40 4h33_A LMO2059 protein; bilaye 99.5 9.8E-15 3.4E-19 129.0 7.0 92 265-356 44-135 (137)
41 3of1_A CAMP-dependent protein 99.5 2.9E-14 9.8E-19 139.2 10.9 111 388-511 6-116 (246)
42 2a9h_A Voltage-gated potassium 99.5 2.1E-14 7.3E-19 129.1 8.9 61 264-324 84-144 (155)
43 4din_B CAMP-dependent protein 99.5 2.7E-14 9.1E-19 149.4 10.9 118 385-511 244-363 (381)
44 3tnp_B CAMP-dependent protein 99.5 4.8E-14 1.6E-18 149.1 12.8 121 381-511 137-258 (416)
45 3of1_A CAMP-dependent protein 99.5 4.1E-14 1.4E-18 138.2 11.1 115 386-512 122-236 (246)
46 1o7f_A CAMP-dependent RAP1 gua 99.5 1.2E-13 4.1E-18 148.5 14.5 130 373-512 26-158 (469)
47 3e6c_C CPRK, cyclic nucleotide 99.5 1.6E-13 5.4E-18 134.7 12.8 124 390-526 10-134 (250)
48 4din_B CAMP-dependent protein 99.5 1.6E-13 5.6E-18 143.4 13.3 123 384-520 125-247 (381)
49 3tnp_B CAMP-dependent protein 99.5 9E-14 3.1E-18 147.0 10.6 115 388-511 266-387 (416)
50 2ih3_C Voltage-gated potassium 99.5 3.4E-13 1.2E-17 116.7 11.1 59 264-322 61-119 (122)
51 2bgc_A PRFA; bacterial infecti 99.4 2E-12 6.7E-17 125.9 17.6 119 398-526 2-125 (238)
52 3la7_A Global nitrogen regulat 99.4 1.1E-12 3.8E-17 128.1 15.0 115 402-525 30-149 (243)
53 1o7f_A CAMP-dependent RAP1 gua 99.4 8.9E-13 3E-17 141.7 13.4 114 386-511 334-449 (469)
54 3eff_K Voltage-gated potassium 99.4 3.1E-12 1E-16 113.6 13.3 90 264-354 40-130 (139)
55 4f7z_A RAP guanine nucleotide 99.4 2E-12 6.9E-17 151.6 13.7 132 370-512 24-158 (999)
56 3cf6_E RAP guanine nucleotide 99.3 3.4E-12 1.1E-16 142.7 10.6 130 369-511 13-144 (694)
57 3b02_A Transcriptional regulat 99.3 1.4E-11 4.7E-16 116.0 11.7 80 415-504 2-82 (195)
58 4f7z_A RAP guanine nucleotide 99.3 1.7E-11 5.8E-16 143.7 13.7 112 386-509 334-447 (999)
59 2zcw_A TTHA1359, transcription 99.2 5.4E-11 1.9E-15 112.5 9.9 85 409-504 2-89 (202)
60 2q67_A Potassium channel prote 99.2 1.1E-10 3.8E-15 99.4 10.7 59 265-323 50-108 (114)
61 3ouf_A Potassium channel prote 99.1 2.3E-10 7.7E-15 94.5 10.6 56 265-320 33-88 (97)
62 2k1e_A Water soluble analogue 99.1 1.6E-11 5.4E-16 102.9 2.5 60 264-323 40-99 (103)
63 3rvy_A ION transport protein; 99.0 2.3E-10 7.9E-15 114.5 6.4 61 262-322 178-244 (285)
64 3ldc_A Calcium-gated potassium 99.0 8.7E-10 3E-14 87.9 7.7 53 265-317 29-81 (82)
65 3pjs_K KCSA, voltage-gated pot 99.0 2.9E-11 1E-15 110.5 -2.1 63 264-326 67-129 (166)
66 1xl4_A Inward rectifier potass 98.7 2E-08 6.7E-13 100.3 9.4 54 264-317 82-135 (301)
67 3um7_A Potassium channel subfa 98.7 3E-08 1E-12 98.5 10.3 57 264-320 115-171 (309)
68 1p7b_A Integral membrane chann 98.7 1.4E-08 4.8E-13 102.4 5.3 55 265-319 97-151 (333)
69 4gx0_A TRKA domain protein; me 98.5 4.7E-07 1.6E-11 99.4 13.3 53 265-317 52-105 (565)
70 2qks_A KIR3.1-prokaryotic KIR 98.5 1.2E-07 4.2E-12 95.2 7.8 56 264-319 78-133 (321)
71 3sya_A G protein-activated inw 98.5 9.5E-07 3.3E-11 88.8 14.0 55 265-319 92-148 (340)
72 3spc_A Inward-rectifier K+ cha 98.4 2.2E-06 7.4E-11 86.3 13.0 55 264-318 94-150 (343)
73 3um7_A Potassium channel subfa 98.4 1.1E-07 3.8E-12 94.4 3.1 57 265-321 225-287 (309)
74 3ukm_A Potassium channel subfa 98.4 6.6E-07 2.2E-11 87.5 8.3 55 264-318 93-147 (280)
75 3ukm_A Potassium channel subfa 98.4 1.2E-06 4.3E-11 85.6 9.9 55 265-319 202-263 (280)
76 1lnq_A MTHK channels, potassiu 98.1 2.2E-07 7.7E-12 94.9 -2.1 56 265-320 46-101 (336)
77 4dxw_A Navrh, ION transport pr 97.6 0.00011 3.8E-09 70.4 7.7 51 28-98 39-89 (229)
78 2kyh_A KVAP, voltage-gated pot 95.6 0.0049 1.7E-07 54.3 2.5 49 29-99 50-98 (147)
79 1ors_C Potassium channel; volt 93.9 0.031 1.1E-06 48.2 3.1 50 28-99 34-83 (132)
80 2kxw_B Sodium channel protein 78.7 1.8 6.2E-05 25.7 2.8 20 530-549 4-23 (27)
81 2l53_B CAM, voltage-gated sodi 76.4 2.1 7.3E-05 26.3 2.7 21 530-550 4-24 (31)
82 3fjs_A Uncharacterized protein 72.7 21 0.00072 28.9 9.2 67 412-497 38-104 (114)
83 3rns_A Cupin 2 conserved barre 70.1 18 0.00063 33.5 9.2 68 412-498 39-106 (227)
84 2ozj_A Cupin 2, conserved barr 70.0 22 0.00077 28.5 8.7 46 415-465 43-88 (114)
85 1yhf_A Hypothetical protein SP 61.7 41 0.0014 26.7 8.8 68 412-498 42-109 (115)
86 3lwc_A Uncharacterized protein 60.5 18 0.00063 29.8 6.4 46 414-465 44-89 (119)
87 2pfw_A Cupin 2, conserved barr 59.1 52 0.0018 26.1 9.0 68 412-498 36-103 (116)
88 3es1_A Cupin 2, conserved barr 53.8 17 0.00057 32.4 5.2 48 412-463 81-128 (172)
89 1v70_A Probable antibiotics sy 51.0 50 0.0017 25.3 7.4 47 413-464 31-78 (105)
90 3h8u_A Uncharacterized conserv 50.0 39 0.0013 27.5 6.8 49 412-464 41-90 (125)
91 2gu9_A Tetracenomycin polyketi 50.0 49 0.0017 26.0 7.3 48 412-464 23-73 (113)
92 1o5u_A Novel thermotoga mariti 49.9 59 0.002 25.7 7.5 48 412-465 33-80 (101)
93 1dgw_A Canavalin; duplicated s 48.9 16 0.00055 32.5 4.4 53 412-465 43-95 (178)
94 4e2g_A Cupin 2 conserved barre 47.4 34 0.0011 27.9 6.0 49 412-465 43-91 (126)
95 3ibm_A Cupin 2, conserved barr 43.6 84 0.0029 27.3 8.3 47 413-464 59-105 (167)
96 3es4_A Uncharacterized protein 43.0 22 0.00076 29.3 3.9 45 417-466 49-93 (116)
97 3kg2_A Glutamate receptor 2; I 42.3 24 0.00082 39.5 5.5 55 264-319 563-617 (823)
98 2fqp_A Hypothetical protein BP 42.2 21 0.00071 27.9 3.6 50 413-465 21-71 (97)
99 3rns_A Cupin 2 conserved barre 41.1 84 0.0029 28.8 8.3 67 412-497 155-222 (227)
100 1yfu_A 3-hydroxyanthranilate-3 40.9 65 0.0022 28.5 6.8 37 429-466 54-90 (174)
101 1j58_A YVRK protein; cupin, de 40.9 37 0.0013 34.2 6.2 53 412-464 81-133 (385)
102 1j58_A YVRK protein; cupin, de 40.8 68 0.0023 32.2 8.2 54 412-465 259-313 (385)
103 3bcw_A Uncharacterized protein 40.3 19 0.00066 29.9 3.2 46 416-466 55-100 (123)
104 2vqa_A SLL1358 protein, MNCA; 39.4 46 0.0016 33.0 6.6 52 413-464 55-107 (361)
105 2i45_A Hypothetical protein; n 37.9 45 0.0015 26.3 5.1 68 418-503 36-103 (107)
106 3d0j_A Uncharacterized protein 37.7 1E+02 0.0035 26.2 7.2 62 426-501 46-110 (140)
107 2bnm_A Epoxidase; oxidoreducta 37.7 67 0.0023 28.5 6.8 50 415-465 122-174 (198)
108 2vqa_A SLL1358 protein, MNCA; 36.1 63 0.0022 32.0 7.0 54 412-465 236-290 (361)
109 1sfn_A Conserved hypothetical 36.0 95 0.0033 28.9 7.8 50 411-465 166-216 (246)
110 1fi2_A Oxalate oxidase, germin 35.6 66 0.0023 28.9 6.4 54 412-465 74-131 (201)
111 1zvf_A 3-hydroxyanthranilate 3 35.3 74 0.0025 28.1 6.2 85 403-502 12-115 (176)
112 4i4a_A Similar to unknown prot 34.6 1.8E+02 0.006 23.3 8.9 81 414-511 38-120 (128)
113 3jzv_A Uncharacterized protein 34.4 57 0.0019 28.5 5.6 46 414-464 57-102 (166)
114 2vpv_A Protein MIF2, MIF2P; nu 34.4 54 0.0018 28.8 5.3 33 428-465 108-140 (166)
115 1sfn_A Conserved hypothetical 34.4 1.4E+02 0.0048 27.7 8.7 45 414-465 54-98 (246)
116 3i7d_A Sugar phosphate isomera 34.3 67 0.0023 27.8 6.0 48 413-465 46-95 (163)
117 3dvk_B Voltage-dependent R-typ 33.2 43 0.0015 19.0 2.7 18 531-548 5-22 (23)
118 3kgz_A Cupin 2 conserved barre 33.0 65 0.0022 27.8 5.6 45 414-463 48-92 (156)
119 3lag_A Uncharacterized protein 32.8 17 0.0006 28.7 1.7 50 412-463 19-69 (98)
120 1o4t_A Putative oxalate decarb 32.5 73 0.0025 26.3 5.8 47 413-464 60-107 (133)
121 1vj2_A Novel manganese-contain 31.9 65 0.0022 26.3 5.3 46 414-464 52-97 (126)
122 1x82_A Glucose-6-phosphate iso 31.6 59 0.002 29.0 5.3 34 431-464 97-130 (190)
123 4b29_A Dimethylsulfoniopropion 31.1 72 0.0024 29.3 5.7 46 416-465 138-183 (217)
124 2pyt_A Ethanolamine utilizatio 30.7 47 0.0016 27.8 4.2 45 415-466 62-106 (133)
125 2d5f_A Glycinin A3B4 subunit; 30.5 82 0.0028 33.0 6.8 61 405-465 362-424 (493)
126 3d82_A Cupin 2, conserved barr 30.3 74 0.0025 24.3 5.2 51 431-500 51-101 (102)
127 1y9q_A Transcriptional regulat 30.1 86 0.003 27.7 6.2 45 415-464 109-155 (192)
128 3h7j_A Bacilysin biosynthesis 30.0 1.2E+02 0.004 28.1 7.3 48 414-466 149-197 (243)
129 1fxz_A Glycinin G1; proglycini 29.5 74 0.0025 33.1 6.2 54 411-464 339-394 (476)
130 2qnk_A 3-hydroxyanthranilate 3 29.4 97 0.0033 29.6 6.4 59 428-501 49-107 (286)
131 3c3v_A Arachin ARAH3 isoform; 29.1 76 0.0026 33.3 6.2 58 406-463 368-427 (510)
132 3bu7_A Gentisate 1,2-dioxygena 28.2 50 0.0017 33.5 4.5 78 412-508 296-376 (394)
133 3bu7_A Gentisate 1,2-dioxygena 27.7 38 0.0013 34.4 3.5 49 413-465 126-174 (394)
134 2q30_A Uncharacterized protein 27.7 2.1E+02 0.0071 22.0 7.9 48 414-465 37-86 (110)
135 3fz3_A Prunin; TREE NUT allerg 27.3 1E+02 0.0036 32.4 6.8 60 405-464 389-450 (531)
136 4axo_A EUTQ, ethanolamine util 27.1 59 0.002 28.1 4.2 32 429-465 83-114 (151)
137 2f4p_A Hypothetical protein TM 26.9 1.9E+02 0.0065 24.2 7.6 47 414-464 52-98 (147)
138 4e2q_A Ureidoglycine aminohydr 26.8 82 0.0028 30.0 5.5 69 414-500 74-142 (266)
139 1rc6_A Hypothetical protein YL 25.9 82 0.0028 29.6 5.5 47 414-465 63-111 (261)
140 2b8m_A Hypothetical protein MJ 25.7 54 0.0019 26.2 3.6 46 415-464 32-77 (117)
141 3l2h_A Putative sugar phosphat 24.9 1.2E+02 0.0043 25.7 6.1 46 413-463 49-96 (162)
142 2cav_A Protein (canavalin); vi 24.8 58 0.002 33.7 4.3 53 411-464 87-139 (445)
143 3h7j_A Bacilysin biosynthesis 24.7 89 0.003 29.0 5.4 47 412-463 36-82 (243)
144 1sq4_A GLXB, glyoxylate-induce 24.7 86 0.0029 29.9 5.4 50 410-464 191-241 (278)
145 3cew_A Uncharacterized cupin p 24.6 1.4E+02 0.0048 24.0 6.1 47 413-464 29-77 (125)
146 1uij_A Beta subunit of beta co 24.4 71 0.0024 32.6 4.9 53 411-464 50-102 (416)
147 2ea7_A 7S globulin-1; beta bar 23.5 68 0.0023 33.0 4.6 53 411-464 62-114 (434)
148 1lr5_A Auxin binding protein 1 23.4 72 0.0025 27.4 4.2 52 413-464 44-99 (163)
149 3dve_B Voltage-dependent N-typ 23.2 42 0.0014 19.0 1.6 19 531-549 4-22 (23)
150 3nw4_A Gentisate 1,2-dioxygena 22.2 1.8E+02 0.0061 29.1 7.2 79 413-510 282-360 (368)
151 2kwv_A RAD30 homolog B, DNA po 22.1 30 0.001 23.1 1.0 18 367-384 17-34 (48)
152 2e9q_A 11S globulin subunit be 21.7 1.5E+02 0.0052 30.6 6.8 60 405-464 317-378 (459)
153 3bxl_B CAM, voltage-dependent 21.4 70 0.0024 18.5 2.3 20 532-551 2-21 (26)
154 1lj2_A NSP3-C, nonstructural R 21.3 3.1E+02 0.011 21.7 7.1 63 310-376 8-78 (110)
155 1sef_A Conserved hypothetical 21.1 1.1E+02 0.0038 28.9 5.4 49 412-465 184-233 (274)
156 2opk_A Hypothetical protein; p 21.0 1E+02 0.0035 24.6 4.4 35 428-465 51-85 (112)
157 1sq4_A GLXB, glyoxylate-induce 21.0 1E+02 0.0035 29.4 5.1 47 414-465 72-120 (278)
158 3myx_A Uncharacterized protein 20.3 1.1E+02 0.0037 28.6 4.8 33 430-466 186-218 (238)
No 1
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=100.00 E-value=7.5e-33 Score=266.65 Aligned_cols=200 Identities=21% Similarity=0.375 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCCCChhHHHhhCchHHHHHHHHHHHHHHhhc
Q 007897 314 QVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKK 393 (585)
Q Consensus 314 ~~il~~~~~~~~~~~~~~~~v~~~m~~~~lp~~L~~rv~~y~~~~w~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~ 393 (585)
++|++++++++.+|+++++.+++||+++++|++|+.||++||+|.|..+++.+++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 578899999999999999999999999999999999999999999998899999999999999999999999998887 8
Q ss_pred CCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhccc
Q 007897 394 VPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLR 473 (585)
Q Consensus 394 v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~ 473 (585)
+|+|++++++++..++..+++..|.|||+|+++||.++.+|||.+|.|+++. +| ..+..+++|++||+.++
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~---~~-~~~~~l~~G~~fGe~~~----- 150 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK---DN-TVLAILGKGDLIGSDSL----- 150 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES---SS-CEEEEECTTCEEECSCC-----
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE---CC-eEEEEecCCCCcCcHHh-----
Confidence 9999999999999999999999999999999999999999999999999985 45 34899999999999855
Q ss_pred CCccCCC--CcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHHhhhh
Q 007897 474 RPFIDRL--PASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSS 528 (585)
Q Consensus 474 ~~~~~~~--p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r~~s~ 528 (585)
+.+. | ++++++|.++|+++.|++++|.++++++| .+....++..++..+.
T Consensus 151 ---~~~~~~~-~~~~v~a~~~~~l~~i~~~~f~~ll~~~p-~~~~~~~~~l~~~l~~ 202 (212)
T 3ukn_A 151 ---TKEQVIK-TNANVKALTYCDLQYISLKGLREVLRLYP-EYAQKFVSEIQHDLTY 202 (212)
T ss_dssp ---SSSSCCB-BCSEEEESSCEEEEEEEHHHHHHHHHHCH-HHHHHHHHHHHHHEEE
T ss_pred ---ccCCCCC-cceEEEEcccEEEEEEeHHHHHHHHHHCh-HHHHHHHHHHHHhhcc
Confidence 4555 5 89999999999999999999999999999 5666665555554443
No 2
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=100.00 E-value=4.9e-32 Score=258.10 Aligned_cols=189 Identities=24% Similarity=0.435 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCCCChhHHHhhCchHHHHHHHHHHHHHHhhcCCCCC
Q 007897 319 AVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFH 398 (585)
Q Consensus 319 ~~~~~~~~~~~~~~~v~~~m~~~~lp~~L~~rv~~y~~~~w~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~v~~F~ 398 (585)
++++++.+|+++++.+++||+.+++|++|+.||++||+|.|.. ++.+++++++.||++||.++..+++.++++++|+|+
T Consensus 2 ~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~ 80 (198)
T 2ptm_A 2 AMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRG-KMFDERHIFREVSESIRQDVANYNCRDLVASVPFFV 80 (198)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcc-cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchh
Confidence 5778999999999999999999999999999999999999984 789999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhcccCCccC
Q 007897 399 NLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFID 478 (585)
Q Consensus 399 ~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~ 478 (585)
+++++++..++..+++..|.|||+|+++||.++.+|||.+|.|+++. .+|+ .+..+++|++||+.+++ .
T Consensus 81 ~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~--~~g~-~~~~l~~G~~fGe~~~~--------~ 149 (198)
T 2ptm_A 81 GADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM--SDGV-IATSLSDGSYFGEICLL--------T 149 (198)
T ss_dssp TCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC--TTSC-EEEEECTTCEESCHHHH--------H
T ss_pred cCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe--cCCe-EEEEecCCCEechHHHc--------C
Confidence 99999999999999999999999999999999999999999999986 5676 58899999999998663 4
Q ss_pred CCCcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHH
Q 007897 479 RLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKR 521 (585)
Q Consensus 479 ~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~ 521 (585)
+.| ++++++|.++|+++.|++++|.++++++| .+....++.
T Consensus 150 ~~~-~~~~~~a~~~~~l~~i~~~~f~~ll~~~p-~~~~~~~~~ 190 (198)
T 2ptm_A 150 RER-RVASVKCETYCTLFSLSVQHFNQVLDEFP-AMRKTMEEI 190 (198)
T ss_dssp SSC-CSSEEEESSCEEEEEEEHHHHHHHHHHCH-HHHHHHHHH
T ss_pred CCc-cceEEEEeeEEEEEEEeHHHHHHHHHHCh-HHHHHHHHH
Confidence 555 89999999999999999999999999999 454444433
No 3
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.98 E-value=1.5e-33 Score=293.28 Aligned_cols=184 Identities=24% Similarity=0.382 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007897 262 AVKILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRR 341 (585)
Q Consensus 262 ~~~Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~~m~~~ 341 (585)
+..|..|+||+++||||+||||+.|.+..|+++++++|++|++++++.+|.+++.+.+...+
T Consensus 159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~------------------ 220 (355)
T 3beh_A 159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR------------------ 220 (355)
T ss_dssp HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 34589999999999999999999999999999999999999999999999998876542110
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCChhHHHhhCchHHHHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCC
Q 007897 342 QLPSRLRQRVRHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDE 421 (585)
Q Consensus 342 ~lp~~L~~rv~~y~~~~w~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge 421 (585)
+++.+ +.+.++++|+|++++++++++++..++++.|+|||
T Consensus 221 ----------~~~~~------------------------------~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge 260 (355)
T 3beh_A 221 ----------GDFVR------------------------------NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGA 260 (355)
T ss_dssp ----------HHHHH------------------------------HHC--------------------------------
T ss_pred ----------Hhhcc------------------------------cchhhhcccccccCCHHHHHHHHHhceEEEECCCC
Confidence 00000 24678899999999999999999999999999999
Q ss_pred EEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhcccCCccCCCCcceeEEEEecceEEEEecHH
Q 007897 422 KIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAK 501 (585)
Q Consensus 422 ~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~ 501 (585)
+|+++||+++++|||.+|.|+++..+ + ..+++|++|||.++ +.+.| ++++++|.++|+++.++++
T Consensus 261 ~I~~~G~~~~~ly~I~~G~v~v~~~~----~--~~l~~G~~fGe~~~--------l~~~~-~~~~~~A~~~~~l~~i~~~ 325 (355)
T 3beh_A 261 VICRIGEPGDRMFFVVEGSVSVATPN----P--VELGPGAFFGEMAL--------ISGEP-RSATVSAATTVSLLSLHSA 325 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeCCCcCceEEEEEeeEEEEEECC----e--eEECCCCEEeehHH--------hCCCC-cceEEEECccEEEEEEeHH
Confidence 99999999999999999999998742 2 57999999999855 45666 8899999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHH
Q 007897 502 NLRYITDHFRYKFANERL 519 (585)
Q Consensus 502 ~f~~ll~~~p~~~~~~~l 519 (585)
+|+++++++| .+.....
T Consensus 326 ~f~~ll~~~p-~~~~~l~ 342 (355)
T 3beh_A 326 DFQMLCSSSP-EIAEIFR 342 (355)
T ss_dssp ------------------
T ss_pred HHHHHHHHCH-HHHHHHH
Confidence 9999999999 3444333
No 4
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=2.3e-31 Score=254.35 Aligned_cols=180 Identities=23% Similarity=0.395 Sum_probs=167.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCCCChhHHHhhCchHHHHHHHHHHHHHHhhcCCCC
Q 007897 318 HAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLF 397 (585)
Q Consensus 318 ~~~~~~~~~~~~~~~~v~~~m~~~~lp~~L~~rv~~y~~~~w~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~v~~F 397 (585)
+++++++.+|+++++.+++||+.+++|++|+.||++|++|.|.. ++.+++++++.||++||.++..+++.++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 46788999999999999999999999999999999999999985 78999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhcccCCcc
Q 007897 398 HNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFI 477 (585)
Q Consensus 398 ~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~ 477 (585)
++++++++..++..+++..|.||++|+++||+++.+|||.+|.|+++. .+|++ ..+++|++||+.+++
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~--~~g~~--~~l~~G~~fGe~~~~-------- 148 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT--KGNKE--MKLSDGSYFGEICLL-------- 148 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC--TTSCC--EEEETTCEECHHHHH--------
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE--CCCeE--EEEcCCCEeccHHHh--------
Confidence 999999999999999999999999999999999999999999999975 56765 368999999998663
Q ss_pred CCCCcceeEEEEecceEEEEecHHHHHHHHHHhh
Q 007897 478 DRLPASSATFVCMESIEAFGLDAKNLRYITDHFR 511 (585)
Q Consensus 478 ~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p 511 (585)
.+.| ++++++|.++|+++.|++++|.++++++|
T Consensus 149 ~~~~-~~~~v~a~~~~~l~~i~~~~f~~ll~~~p 181 (202)
T 3bpz_A 149 TRGR-RTASVRADTYCRLYSLSVDNFNEVLEEYP 181 (202)
T ss_dssp HCSB-CSSEEEESSCEEEEEEEHHHHHHHHHHSG
T ss_pred cCCC-cccEEEEeeEEEEEEEEHHHHHHHHHHCH
Confidence 4555 88999999999999999999999999999
No 5
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.81 E-value=2.3e-19 Score=163.66 Aligned_cols=141 Identities=17% Similarity=0.287 Sum_probs=117.9
Q ss_pred hhHHHhhCchHHHHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEe
Q 007897 367 EMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQS 446 (585)
Q Consensus 367 ~~~il~~Lp~~Lr~~i~~~~~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~ 446 (585)
.+++++.||++||.++..+++.+.++++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|+++.
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~- 83 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ- 83 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE-
Confidence 3469999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cCCCcEEEEecCCCCeecccchhhcccCCccCC--CCcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHH
Q 007897 447 LSKGMVATSVLEPGGFLGDELLSWCLRRPFIDR--LPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKR 521 (585)
Q Consensus 447 ~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~--~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~ 521 (585)
....+..+++|++||+.++ +.+ .| ++++++|.++|+++.|++++|.++++++| .+....++.
T Consensus 84 ---~~~~~~~~~~G~~fG~~~~--------~~~~~~~-~~~~~~a~~~~~v~~i~~~~~~~l~~~~p-~~~~~~~~~ 147 (160)
T 4f8a_A 84 ---DDEVVAILGKGDVFGDVFW--------KEATLAQ-SCANVRALTYCDLHVIKRDALQKVLEFYT-AFSHSFSRN 147 (160)
T ss_dssp ---TTEEEEEEETTCEEECCTT--------TCSSCCB-CSSEEEESSCEEEEEEEHHHHHHHHHHCH-HHHHHHHHH
T ss_pred ---CCEEEEEecCCCEeCcHHH--------hcCcccc-eEEEEEECCceEEEEEcHHHHHHHHHHHH-HHHHHHHHH
Confidence 2245889999999999865 344 45 88999999999999999999999999999 454444433
No 6
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.81 E-value=2e-20 Score=181.11 Aligned_cols=184 Identities=14% Similarity=0.212 Sum_probs=123.8
Q ss_pred cCcchhhhHHHHHHhHHHHHHHHHHHhhheeecCCcccccCCeeeechHHhHHhhhccccCeeehhhhccCcceeEEEEe
Q 007897 26 DGALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQAVFWLV 105 (585)
Q Consensus 26 d~~~~~~~~~~~~~~d~~f~~Di~l~F~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~~~~F~~Dlis~lP~~~i~~~~~ 105 (585)
+.+....+.++|.+++++|.+|++++|.++. + .++|+|+ +++|+++++|++....
T Consensus 34 ~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~---------------~----~~~y~~~---~iiDllailP~~~~~~--- 88 (223)
T 1orq_C 34 SGEYLVRLYLVDLILVIILWADYAYRAYKSG---------------D----PAGYVKK---TLYEIPALVPAGLLAL--- 88 (223)
T ss_dssp TTCTTTHHHHHHHHHHHHHHHHHHHHHHTTS---------------C----HHHHHHH---HHHHCTTHHHHHHHHH---
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHcccc---------------c----HHHHHHH---hHHHHHHHHHHHHHHH---
Confidence 3456677889999999999999999999862 0 4799986 7899999999875321
Q ss_pred cccccchhhH--HHHHHHHHHHHHHhhhhhhHHHhhhhhceeeccceeehhh-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 106 VPKLIREEKI--KMIMTILLIIFLFQFLPKVYHSIYLMRRMQKVTGYIFGTI-WWGFGLNLIAYFIASHVAGGCWYVLAI 182 (585)
Q Consensus 106 ~~~~~~~~~~--~~~~~~l~~~~l~~~l~rl~r~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~~~l~~H~~aC~w~~i~~ 182 (585)
+ ..+. ....+.+| +.|++|++|+.+...+..+...... ..++...++..++..|+.||++|.+..
T Consensus 89 -~----~~~~~~~~~lr~lR-------llRllR~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~ 156 (223)
T 1orq_C 89 -I----EGHLAGLGLFRLVR-------LLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEY 156 (223)
T ss_dssp -H----HHHHHTTTCHHHHH-------HHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred -H----hcchhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 0111 11223332 3333333333322222111110000 012344445556788999999887421
Q ss_pred HHHhhHHHHhhccccccccccccccccccccccCCCCCCCccccCCccccccccccCCCCCccccccccccccccCchhH
Q 007897 183 QRVASCLRQQCHRQANCNLYLSCSEEVCYQFLVPSGAIGNTCGGNSTTTVRKSLCLDVNGPFHYGIYQWALPVISSNSVA 262 (585)
Q Consensus 183 ~~~~~c~~~~c~~~~~c~~~~~c~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~c~~~~~~~~~~~y~~~~~~~~~~~~~ 262 (585)
+ .+++| .
T Consensus 157 -----------------------------------~-~~~~~-------------------------------------~ 163 (223)
T 1orq_C 157 -----------------------------------P-DPNSS-------------------------------------I 163 (223)
T ss_dssp -----------------------------------S-STTCS-------------------------------------C
T ss_pred -----------------------------------C-CcCCC-------------------------------------c
Confidence 0 00111 1
Q ss_pred HHHHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 263 VKILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHA 319 (585)
Q Consensus 263 ~~Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~ 319 (585)
..|..|+||+++||||+||||+.|.+..|++++++.|++|.+++|+.+|.+++.+++
T Consensus 164 ~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 164 KSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp CSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 258999999999999999999999999999999999999999999999999998865
No 7
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.77 E-value=6.3e-18 Score=158.86 Aligned_cols=151 Identities=18% Similarity=0.304 Sum_probs=128.7
Q ss_pred hhHHHhhCchHH----HHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEE
Q 007897 367 EMELIKDLPEGL----RRGIKRYLCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIK 442 (585)
Q Consensus 367 ~~~il~~Lp~~L----r~~i~~~~~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~ 442 (585)
+....+.++|+| +.+.......+.++++|+|++++++.+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 445666666654 3455556668899999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCcEE-EEecCCCCeecccchhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHH
Q 007897 443 RCQSLSKGMVA-TSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKR 521 (585)
Q Consensus 443 v~~~~~~g~~~-~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~ 521 (585)
++...++|++. +..+++|++||+.+++ .+.| ++++++|.++|+++.|++++|.++++++| .+....++.
T Consensus 93 v~~~~~~g~~~~~~~~~~G~~fGe~~~l--------~~~~-~~~~v~A~~~~~v~~i~~~~~~~l~~~~p-~~~~~l~~~ 162 (187)
T 3gyd_A 93 VIKDIPNKGIQTIAKVGAGAIIGEMSMI--------DGMP-RSASCVASLPTDFAVLSRDALYQLLANMP-KLGNKVLIR 162 (187)
T ss_dssp EEEEETTTEEEEEEEEETTCEESHHHHH--------HCCC-CSSEEEEEEEEEEEEEEHHHHHHHHHHCH-HHHHHHHHH
T ss_pred EEEECCCCCeEEEEEccCCCeeeeHHHh--------CCCC-eeEEEEECCCeEEEEEcHHHHHHHHHHCh-HHHHHHHHH
Confidence 99988889876 8999999999998653 4555 88999999999999999999999999999 566666655
Q ss_pred HHHhhh
Q 007897 522 TARYYS 527 (585)
Q Consensus 522 ~~r~~s 527 (585)
.++..+
T Consensus 163 l~~~l~ 168 (187)
T 3gyd_A 163 LLQLLT 168 (187)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 8
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.73 E-value=1.1e-17 Score=148.83 Aligned_cols=126 Identities=21% Similarity=0.317 Sum_probs=114.7
Q ss_pred hCchHHHHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcE
Q 007897 373 DLPEGLRRGIKRYLCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMV 452 (585)
Q Consensus 373 ~Lp~~Lr~~i~~~~~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~ 452 (585)
++|+.+|.+...+...++++++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|++.. +|+
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~---~g~- 82 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---EGV- 82 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE---TTE-
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE---CCE-
Confidence 6888899999999999999999999999999999999999999999999999999999999999999999965 554
Q ss_pred EEEecCCCCeecccchhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhh
Q 007897 453 ATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFR 511 (585)
Q Consensus 453 ~~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p 511 (585)
.+..+++|++||+.+++ .+.| ++++++|.++|+++.|++++|.++++++|
T Consensus 83 ~~~~~~~G~~fGe~~~l--------~~~~-~~~~~~a~~~~~v~~i~~~~~~~l~~~~p 132 (139)
T 3ocp_A 83 KLCTMGPGKVFGELAIL--------YNCT-RTATVKTLVNVKLWAIDRQCFQTIMMRTG 132 (139)
T ss_dssp EEEEECTTCEESCHHHH--------HCCC-CSSEEEESSCEEEEEEEHHHHHHHHTC--
T ss_pred EEEEeCCCCEeccHHHH--------CCCC-cceEEEECcceEEEEEcHHHHHHHHhhCh
Confidence 58899999999999764 4455 88999999999999999999999999999
No 9
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.73 E-value=1.7e-17 Score=147.89 Aligned_cols=129 Identities=14% Similarity=0.234 Sum_probs=108.8
Q ss_pred HHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcE-E---EEecCCCCeec
Q 007897 389 DLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMV-A---TSVLEPGGFLG 464 (585)
Q Consensus 389 ~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~-~---~~~l~~G~~fG 464 (585)
+.++++|+|++++++.++.++..++.+.|.+|++|+++|+.++.+|+|.+|.|+++...++|++ . +..+++|++||
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG 85 (142)
T 3mdp_A 6 ERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFG 85 (142)
T ss_dssp TGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEEC
T ss_pred HHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEec
Confidence 5788999999999999999999999999999999999999999999999999999987777754 3 68999999999
Q ss_pred ccchhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 007897 465 DELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYS 527 (585)
Q Consensus 465 e~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r~~s 527 (585)
+.++ +.+.| ++++++|.++|+++.|++++|.++++++| .+....++..++..+
T Consensus 86 ~~~~--------~~~~~-~~~~~~a~~~~~~~~i~~~~~~~l~~~~p-~~~~~l~~~l~~~l~ 138 (142)
T 3mdp_A 86 VSSL--------IKPYH-YTSSARATKPVRVVDINGARLREMSENNQ-ALGQVLMNNVAAAVL 138 (142)
T ss_dssp GGGS--------STTCB-CSSEEEESSCEEEEEEEHHHHHHHHHHCH-HHHHHHHHHHHHHHH
T ss_pred hHHH--------cCCCC-ceEEEEECCcEEEEEEeHHHHHHHHHHCh-HHHHHHHHHHHHHHH
Confidence 9855 45666 88999999999999999999999999999 566666655554433
No 10
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.73 E-value=8.4e-17 Score=144.47 Aligned_cols=115 Identities=22% Similarity=0.391 Sum_probs=107.3
Q ss_pred HHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeeccc
Q 007897 388 LDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDE 466 (585)
Q Consensus 388 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~ 466 (585)
.++++++|+|.+++++.++.++..++...|++|++|+++|++++.+|||.+|.|+++..+.+|++. +..+++|++||+.
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 83 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL 83 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence 457899999999999999999999999999999999999999999999999999999888888887 8999999999998
Q ss_pred chhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhh
Q 007897 467 LLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFR 511 (585)
Q Consensus 467 ~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p 511 (585)
++ +.+.| +.++++|.++|+++.|++++|.++++++|
T Consensus 84 ~~--------~~~~~-~~~~~~a~~~~~~~~i~~~~~~~l~~~~p 119 (149)
T 2pqq_A 84 SL--------FDPGP-RTATGTALTEVKLLALGHGDLQPWLNVRP 119 (149)
T ss_dssp GG--------TSCEE-CSSEEEESSCEEEEEEEGGGHHHHHHHCT
T ss_pred Hh--------cCCCC-cceEEEEccceEEEEEeHHHHHHHHHhCc
Confidence 55 45555 88999999999999999999999999999
No 11
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.72 E-value=4.8e-18 Score=183.34 Aligned_cols=250 Identities=10% Similarity=0.125 Sum_probs=123.6
Q ss_pred chhhhHHHHHHhHHHHHHHHHHHhhheeecCCcccccCCeeeechHHhHHhhhccccCeeehhhhccCcceeEEEEeccc
Q 007897 29 LAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQAVFWLVVPK 108 (585)
Q Consensus 29 ~~~~~~~~~~~~d~~f~~Di~l~F~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~~~~F~~Dlis~lP~~~i~~~~~~~~ 108 (585)
....+.++|.++.++|.+|++++|.++- . .++|+|+ +|.++|+++++|+.+.+. .+.
T Consensus 237 ~~~~l~~ie~i~~~iFtiE~ilR~~~~~--~-----------------k~~Y~ks-~wniiDli~iip~~i~l~---~~~ 293 (514)
T 2r9r_B 237 FTDPFFIVETLCIIWFSFEFLVRFFACP--S-----------------KAGFFTN-IMNIIDIVAIIPYYVTIF---LTE 293 (514)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHSS--C-----------------SSSSTTS-HHHHHHHHTTHHHHHHHH---HHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhCC--c-----------------HHHHHhc-hhHHHHHHHHHHHHHHHH---hhh
Confidence 3456789999999999999999998751 0 2589998 489999999999765221 110
Q ss_pred ccchhh-HHHHHHHHHHHHHHhhhhhhHHHhhhhhcee---eccceeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 109 LIREEK-IKMIMTILLIIFLFQFLPKVYHSIYLMRRMQ---KVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQR 184 (585)
Q Consensus 109 ~~~~~~-~~~~~~~l~~~~l~~~l~rl~r~~~l~~~~~---~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~ 184 (585)
...++. .......+|+++ +.|++|++++.+... .....+.. ....+..+++..++..+++||++|++-.
T Consensus 294 ~~~~~~~~~~~~~~lrvlR----llRvlRilkL~r~~~~l~~l~~tl~~-s~~~l~~ll~~l~i~~~if~~~~~~~e~-- 366 (514)
T 2r9r_B 294 SNKSVLQFQNVRRVVQIFR----IMRILRIFKLSRHSKGLQILGQTLKA-SMRELGLLIFFLFIGVILFSSAVYFAEA-- 366 (514)
T ss_dssp TSCSHHHHHTTHHHHHHHH----HHGGGGGGGGGGSCHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred ccccchhhhhHHHHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhheeec--
Confidence 000111 011122333332 334444444433322 11111111 1112222333334566777877775310
Q ss_pred HhhHHHHhhccccccccccccccccccccccCCCCCCCccccCCccccccccccCCCCCccccccccccccccCchhHHH
Q 007897 185 VASCLRQQCHRQANCNLYLSCSEEVCYQFLVPSGAIGNTCGGNSTTTVRKSLCLDVNGPFHYGIYQWALPVISSNSVAVK 264 (585)
Q Consensus 185 ~~~c~~~~c~~~~~c~~~~~c~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~c~~~~~~~~~~~y~~~~~~~~~~~~~~~ 264 (585)
..+++ .+..
T Consensus 367 ----------------------------------~~~~~-------------------------------------~F~s 375 (514)
T 2r9r_B 367 ----------------------------------DERDS-------------------------------------QFPS 375 (514)
T ss_dssp ----------------------------------TCTTC-------------------------------------SCSS
T ss_pred ----------------------------------cCCCc-------------------------------------cccc
Confidence 00011 1134
Q ss_pred HHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007897 265 ILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLP 344 (585)
Q Consensus 265 Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~~m~~~~lp 344 (585)
|..|+||++.||||+||||+.|.+..++++++++|++|++++++.+|.+.+.++....++.+ ++..+..++++.-...|
T Consensus 376 ~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~-~~~~~l~~h~iicg~~~ 454 (514)
T 2r9r_B 376 IPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETE-GEEQAQYLQVTSSPKIP 454 (514)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC-------------------
T ss_pred hhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCCEEEeCCCc
Confidence 78999999999999999999999999999999999999999999999999887776553332 22223334455444444
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChhHHHhhCchHHHHHHHHHHHH
Q 007897 345 SRLRQRVRHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCL 388 (585)
Q Consensus 345 ~~L~~rv~~y~~~~w~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~ 388 (585)
.....+ + .+.+...++.-..+|.+.++.++......
T Consensus 455 ~~~~l~--~------~~~~~~~~~s~~~el~e~~~~~~~~~~~~ 490 (514)
T 2r9r_B 455 SSPDLK--K------SRSASTISKSDYMEIQEGVNNSNEDFREE 490 (514)
T ss_dssp --------------------------------------------
T ss_pred cchhHH--h------cccCCCccccccccccccccccccccccc
Confidence 433221 0 11123334455677888888777655443
No 12
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.71 E-value=2e-16 Score=151.59 Aligned_cols=148 Identities=20% Similarity=0.261 Sum_probs=120.0
Q ss_pred hhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeecccchh
Q 007897 391 IKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDELLS 469 (585)
Q Consensus 391 l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~~ll 469 (585)
++++|+|++++++.++.++..++.+.|++|++|+++||+++.+|||.+|.|+++..+++|++. +..+++|++||+.++
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~- 79 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSL- 79 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHH-
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhh-
Confidence 468899999999999999999999999999999999999999999999999999988889886 899999999999865
Q ss_pred hcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhh
Q 007897 470 WCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMR 548 (585)
Q Consensus 470 ~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r~~s~~~~~~~~~~~~~~~~~~~~r 548 (585)
+.+.| ++++++|.++|+++.+++++|.++++++| .+....++...+......+.........+..|..+-
T Consensus 80 -------~~~~~-~~~~~~a~~~~~v~~i~~~~~~~l~~~~p-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Rl~~~ 149 (216)
T 4ev0_A 80 -------LDEGE-RSASAVAVEDTELLALFREDYLALIRRLP-LVAHNLAALLARRLREADLELDLLSFEEARNRVAYA 149 (216)
T ss_dssp -------HHCCB-CSSEEEESSSEEEEEEEHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------cCCCC-cceEEEEcCCEEEEEEcHHHHHHHHHHCc-HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 34555 88999999999999999999999999999 566666665555544333333333333444444433
No 13
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.70 E-value=1.4e-16 Score=143.90 Aligned_cols=124 Identities=16% Similarity=0.232 Sum_probs=106.3
Q ss_pred HHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeeccc
Q 007897 388 LDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDE 466 (585)
Q Consensus 388 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~ 466 (585)
.++++++++|..++++.+..++..++.+.|.+|++|+++||.++.+|||.+|.|+++....+|++. +..+++|++||+.
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 90 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 90 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGG
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccH
Confidence 467999999999999999999999999999999999999999999999999999999877788876 8999999999999
Q ss_pred chhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHH
Q 007897 467 LLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLK 520 (585)
Q Consensus 467 ~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~ 520 (585)
++ +.+.|.+.++++|.++|+++.|++++|.++++++| .+....++
T Consensus 91 ~~--------~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p-~~~~~l~~ 135 (154)
T 2z69_A 91 MM--------FMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNT-PLALALLA 135 (154)
T ss_dssp GG--------GSSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCH-HHHHHHHH
T ss_pred hh--------ccCCCCCceEEEEccceEEEEECHHHHHHHHHHCh-HHHHHHHH
Confidence 65 34443378999999999999999999999999999 44444433
No 14
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.70 E-value=6.1e-17 Score=152.67 Aligned_cols=129 Identities=15% Similarity=0.158 Sum_probs=113.5
Q ss_pred HHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeeccc
Q 007897 388 LDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDE 466 (585)
Q Consensus 388 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~ 466 (585)
..+++++|.|.+++++.++.+...++.+.|++|++|+++||+++.+|||.+|.|+++..+++|++. +..+++|++||+.
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~ 85 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDY 85 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeeh
Confidence 457788899999999999999999999999999999999999999999999999999988899887 8999999999987
Q ss_pred -chhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 007897 467 -LLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYY 526 (585)
Q Consensus 467 -~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r~~ 526 (585)
++ +.+.| ++++++|.++|+++.|++++|.++++++| .+....++...+..
T Consensus 86 ~~~--------~~~~~-~~~~~~a~~~~~v~~i~~~~~~~l~~~~p-~~~~~~~~~~~~~l 136 (194)
T 3dn7_A 86 MAF--------QKQQP-ADFYIQSVENCELLSITYTEQENLFERIP-ALERYFRLVYQKSF 136 (194)
T ss_dssp HHH--------HHTCB-CSSEEEESSCEEEEEEEHHHHHHHHHHCT-THHHHHHHHHHHHH
T ss_pred HHH--------hcCCC-CceEEEEECCEEEEEEeHHHHHHHHHhCH-HHHHHHHHHHHHHH
Confidence 33 35555 88999999999999999999999999999 55555555444443
No 15
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.70 E-value=8.1e-17 Score=147.14 Aligned_cols=122 Identities=22% Similarity=0.279 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecC
Q 007897 380 RGIKRYLCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLE 458 (585)
Q Consensus 380 ~~i~~~~~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~ 458 (585)
.+.......+.++++|+|++++++.+..++..++...|.+|++|+++||.++.+|||.+|.|+++. ..+|++. +..++
T Consensus 29 ~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~~~g~~~~~~~~~ 107 (161)
T 3idb_B 29 TDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYD 107 (161)
T ss_dssp CHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEE-EETTEEEEEEEEE
T ss_pred CHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEE-cCCCCeEEEEEcC
Confidence 334445567899999999999999999999999999999999999999999999999999999998 6778776 89999
Q ss_pred CCCeecccchhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhh
Q 007897 459 PGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFR 511 (585)
Q Consensus 459 ~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p 511 (585)
+|++||+.++ +.+.| ++++++|.++|+++.|++++|.++++++|
T Consensus 108 ~G~~fGe~~~--------~~~~~-~~~~v~A~~~~~~~~i~~~~~~~l~~~~p 151 (161)
T 3idb_B 108 NRGSFGELAL--------MYNTP-RAATITATSPGALWGLDRVTFRRIIVKNN 151 (161)
T ss_dssp SCCEECGGGG--------TCCCC-CSSEEEESSSEEEEEEEHHHHHHHHHHHH
T ss_pred CCCEechHHH--------HcCCC-cccEEEECCCeEEEEEeHHHHHHHHHHCH
Confidence 9999999865 45666 88999999999999999999999999999
No 16
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.68 E-value=2.4e-16 Score=152.51 Aligned_cols=129 Identities=16% Similarity=0.399 Sum_probs=114.9
Q ss_pred HHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeeccc
Q 007897 388 LDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDE 466 (585)
Q Consensus 388 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~ 466 (585)
.+.++++|+|.+++++.++.++..++...|.+|++|+++||+++.+|||.+|.|+++..+++|++. +..+++|++||+.
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~ 84 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL 84 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeH
Confidence 357899999999999999999999999999999999999999999999999999999988889887 8999999999998
Q ss_pred chhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 007897 467 LLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYY 526 (585)
Q Consensus 467 ~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r~~ 526 (585)
++ +.+.| ++++++|.++|+++.|++++|.++++++| .+....++...+..
T Consensus 85 ~~--------~~~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p-~~~~~~~~~l~~~l 134 (227)
T 3d0s_A 85 SI--------FDPGP-RTSSATTITEVRAVSMDRDALRSWIADRP-EISEQLLRVLARRL 134 (227)
T ss_dssp HH--------HSCSC-CSSEEEESSCEEEEEEEHHHHHHTTSSCH-HHHHHHHHHHHHHH
T ss_pred HH--------cCCCC-ceeEEEEcccEEEEEEeHHHHHHHHHHCh-HHHHHHHHHHHHHH
Confidence 65 35556 88999999999999999999999999999 56665555554443
No 17
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.67 E-value=7.5e-16 Score=148.04 Aligned_cols=128 Identities=13% Similarity=0.118 Sum_probs=112.8
Q ss_pred HHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCe--ecc
Q 007897 389 DLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGF--LGD 465 (585)
Q Consensus 389 ~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~--fGe 465 (585)
++++++|+|.+++++.++.+...++.+.|++|++|+++||+++.+|||.+|.|+++..+++|++. +..+++|++ ||+
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~ 82 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA 82 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence 57889999999999999999999999999999999999999999999999999999988899887 899999999 788
Q ss_pred cchhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 007897 466 ELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYY 526 (585)
Q Consensus 466 ~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r~~ 526 (585)
.++ +.+.| ++++++|.++|+++.+++++|.++++++| .+....++...+..
T Consensus 83 ~~~--------~~~~~-~~~~~~a~~~~~~~~i~~~~~~~l~~~~p-~~~~~~~~~l~~~l 133 (220)
T 3dv8_A 83 SCI--------MRSIQ-FEVTIEAEKDTDLWIIPAEIYKGIMKDSA-PVANYTNELMATRF 133 (220)
T ss_dssp GGG--------CTTCC-CCCEEEESSCEEEEEEEHHHHHHHHHHCH-HHHHHHHHHHHHHH
T ss_pred HHH--------hCCCC-CceEEEEeeeeEEEEEEHHHHHHHHHHCH-HHHHHHHHHHHHHH
Confidence 754 46666 88999999999999999999999999999 56665555544443
No 18
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.67 E-value=8.8e-16 Score=148.89 Aligned_cols=129 Identities=16% Similarity=0.239 Sum_probs=113.3
Q ss_pred HHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeeccc
Q 007897 388 LDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDE 466 (585)
Q Consensus 388 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~ 466 (585)
.++++++|+|.+++++.+..++..++.+.|++|++|+++||+++.+|||.+|.|+++...++|++. +..+++|++||+.
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~ 84 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGET 84 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTT
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeH
Confidence 367899999999999999999999999999999999999999999999999999999988889887 8999999999998
Q ss_pred chhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 007897 467 LLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYY 526 (585)
Q Consensus 467 ~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r~~ 526 (585)
++ +.+.| ++++++|.++|+++.+++++|.++++++| .+....++..++..
T Consensus 85 ~~--------~~~~~-~~~~~~a~~~~~v~~i~~~~~~~l~~~~p-~~~~~~~~~l~~~l 134 (231)
T 3e97_A 85 AV--------LAHQE-RSASVRALTPVRTLMLHREHFELILRRHP-RVLWNLAEMLARRV 134 (231)
T ss_dssp TT--------TCCCC-CCEEEEESSCEEEEEECHHHHHHHHHHCH-HHHHHHHHHHHHHH
T ss_pred HH--------hCCCC-ceEEEEECCcEEEEEEeHHHHHHHHHHCH-HHHHHHHHHHHHHH
Confidence 55 45666 89999999999999999999999999999 56555555444433
No 19
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.66 E-value=2.8e-16 Score=152.98 Aligned_cols=130 Identities=13% Similarity=0.167 Sum_probs=115.9
Q ss_pred HHHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeecc
Q 007897 387 CLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGD 465 (585)
Q Consensus 387 ~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe 465 (585)
..+.++++|+|.+++++.++.++..++.+.|.+|++|+++|++++.+|||.+|.|+++..+.+|++. +..+++|++||+
T Consensus 9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~ 88 (237)
T 3fx3_A 9 QKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFGE 88 (237)
T ss_dssp HHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEECH
T ss_pred HHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEech
Confidence 4678999999999999999999999999999999999999999999999999999999988899886 899999999999
Q ss_pred cchhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 007897 466 ELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYY 526 (585)
Q Consensus 466 ~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r~~ 526 (585)
.+++ .+.| ++++++|.++|+++.|++++|.++++++| .+....++..++..
T Consensus 89 ~~~~--------~~~~-~~~~~~a~~~~~v~~i~~~~~~~l~~~~p-~~~~~~~~~l~~~l 139 (237)
T 3fx3_A 89 AVAL--------RNTP-YPVSAEAVTPCEVMHIPSPVFVSLMRRDP-EICISILATTFGHL 139 (237)
T ss_dssp HHHH--------HTCC-CSSEEEESSSEEEEEEEHHHHHHHHHHCH-HHHHHHHHHHHHHH
T ss_pred HHHh--------cCCC-CCceEEECCceEEEEEcHHHHHHHHHHCH-HHHHHHHHHHHHHH
Confidence 9663 4555 88999999999999999999999999999 56655555554443
No 20
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.66 E-value=1.9e-15 Score=146.28 Aligned_cols=131 Identities=11% Similarity=0.145 Sum_probs=105.0
Q ss_pred HHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeeccc
Q 007897 388 LDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDE 466 (585)
Q Consensus 388 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~ 466 (585)
...+++.++|.+++++.++.++..++...|++|++|+++||+++.+|||.+|.|+++..+++|++. +..+++|++||+.
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 89 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEM 89 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCG
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEeh
Confidence 457889999999999999999999999999999999999999999999999999999988899987 9999999999998
Q ss_pred chhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHh-----hHHHHHHHHHHHHHhhh
Q 007897 467 LLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHF-----RYKFANERLKRTARYYS 527 (585)
Q Consensus 467 ~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~-----p~~~~~~~l~~~~r~~s 527 (585)
++ +.+.+.++++++|.++|+++.+++++|.++++++ | .+....++..++...
T Consensus 90 ~~--------~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p-~~~~~~~~~l~~~l~ 146 (230)
T 3iwz_A 90 GL--------FIESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAP-RILYAIGVQLSKRLL 146 (230)
T ss_dssp GG--------TSCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHH-HHHHHHHHHHHHHHH
T ss_pred hh--------hcCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCc-HHHHHHHHHHHHHHH
Confidence 65 3443228899999999999999999999999999 9 566666665555444
No 21
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.65 E-value=5.3e-16 Score=149.89 Aligned_cols=151 Identities=15% Similarity=0.193 Sum_probs=123.4
Q ss_pred HHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeeccc
Q 007897 388 LDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDE 466 (585)
Q Consensus 388 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~ 466 (585)
.++++++|+|++++++.++.++..++...|++|++|+++||+++.+|||.+|.|+++..+++|++. +..+++|++||+.
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~ 87 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA 87 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCT
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeH
Confidence 467899999999999999999999999999999999999999999999999999999877788876 8899999999998
Q ss_pred chhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 007897 467 LLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYR 546 (585)
Q Consensus 467 ~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r~~s~~~~~~~~~~~~~~~~~~~ 546 (585)
++ +.+.|.++++++|.++|+++.+++++|.++++++| .+....++..++......+.........+..|..
T Consensus 88 ~~--------~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~Rl~ 158 (227)
T 3dkw_A 88 MM--------FMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNT-PLALALLAKLSTRLHQRIDEIETLSLKNATHRVV 158 (227)
T ss_dssp TT--------TTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh--------cCCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 54 34554478999999999999999999999999999 5666666665555443333333333334444444
Q ss_pred h
Q 007897 547 M 547 (585)
Q Consensus 547 ~ 547 (585)
+
T Consensus 159 ~ 159 (227)
T 3dkw_A 159 R 159 (227)
T ss_dssp H
T ss_pred H
Confidence 3
No 22
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.64 E-value=1.8e-15 Score=152.80 Aligned_cols=130 Identities=18% Similarity=0.296 Sum_probs=118.5
Q ss_pred HHHhhCchHHHHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecC
Q 007897 369 ELIKDLPEGLRRGIKRYLCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLS 448 (585)
Q Consensus 369 ~il~~Lp~~Lr~~i~~~~~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~ 448 (585)
....++|+..|.+...++..+.++++++|++++++.+..++..++.+.|.+|++|+++||.++.+|||.+|.|+++.
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~--- 95 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--- 95 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE---
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE---
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred CCcEEEEecCCCCeecccchhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhh
Q 007897 449 KGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFR 511 (585)
Q Consensus 449 ~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p 511 (585)
+|. .+..+.+|++||+.+++ .+.| +++|++|.++|+++.|++++|.+++..+|
T Consensus 96 ~g~-~~~~~~~G~~fGe~~ll--------~~~~-~~~tv~a~~~~~l~~i~~~~~~~i~~~~~ 148 (299)
T 3shr_A 96 EGV-KLCTMGPGKVFGELAIL--------YNCT-RTATVKTLVNVKLWAIDRQCFQTIMMRTG 148 (299)
T ss_dssp TTE-EEEEECTTCEESCSGGG--------TTTB-CCSEEEESSCEEEEEECHHHHHHHHHHHH
T ss_pred CCE-EEEEeCCCCeeeHhHHh--------cCCC-CCcEEEEcCCeEEEEEcHHHHHHHhhHhH
Confidence 454 47899999999999764 4555 89999999999999999999999999999
No 23
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.64 E-value=5.5e-16 Score=150.65 Aligned_cols=129 Identities=15% Similarity=0.271 Sum_probs=113.4
Q ss_pred HHHhhcCCCCCCCcHHHHHHHHhh--cceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeec
Q 007897 388 LDLIKKVPLFHNLDDLILDNICDR--VRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLG 464 (585)
Q Consensus 388 ~~~l~~v~~F~~~~~~~l~~l~~~--l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fG 464 (585)
...++++|+|..++++.++.++.. ++...|.+|++|+++||.++.+|||.+|.|+++..+++|++. +..+++|++||
T Consensus 17 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~fG 96 (232)
T 1zyb_A 17 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIE 96 (232)
T ss_dssp HTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEEC
T ss_pred HHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCeee
Confidence 567899999999999999999998 999999999999999999999999999999999887888876 89999999999
Q ss_pred ccchhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 007897 465 DELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARY 525 (585)
Q Consensus 465 e~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r~ 525 (585)
+.++ +.+.|.++++++|.++|+++.|++++|.++++++| .+....++..++.
T Consensus 97 ~~~~--------~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p-~~~~~l~~~l~~~ 148 (232)
T 1zyb_A 97 PQSL--------FGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYD-IFRLNYMNIVSNR 148 (232)
T ss_dssp GGGG--------SSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSH-HHHHHHHHHHHHH
T ss_pred ehHH--------hCCCCCCceEEEEccceEEEEEEHHHHHHHhccCH-HHHHHHHHHHHHH
Confidence 9865 34443378999999999999999999999999999 5555555544433
No 24
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.63 E-value=9.7e-16 Score=135.81 Aligned_cols=122 Identities=25% Similarity=0.393 Sum_probs=105.6
Q ss_pred HHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccc
Q 007897 388 LDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDEL 467 (585)
Q Consensus 388 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ 467 (585)
.+.++++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|+++..+ + ..+++|++||+.+
T Consensus 10 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~----~--~~~~~G~~~G~~~ 83 (138)
T 1vp6_A 10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN----P--VELGPGAFFGEMA 83 (138)
T ss_dssp HHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS----C--EEECTTCEECHHH
T ss_pred HHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC----c--ceECCCCEeeehH
Confidence 468999999999999999999999999999999999999999999999999999998632 2 4789999999986
Q ss_pred hhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 007897 468 LSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARY 525 (585)
Q Consensus 468 ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r~ 525 (585)
++ .+.| +.++++|.++|+++.|++++|.++++++| .+....++...+.
T Consensus 84 ~~--------~~~~-~~~~~~a~~~~~~~~i~~~~~~~l~~~~p-~~~~~~~~~~~~r 131 (138)
T 1vp6_A 84 LI--------SGEP-RSATVSAATTVSLLSLHSADFQMLCSSSP-EIAEIFRKTALER 131 (138)
T ss_dssp HH--------HCCC-CSSCEEESSSEEEEEEEHHHHHHHHHHCH-HHHHHHHHHHHHH
T ss_pred hc--------cCCC-ceeEEEECCCEEEEEECHHHHHHHHHHCH-HHHHHHHHHHHHh
Confidence 63 4555 78999999999999999999999999999 4555554444433
No 25
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.62 E-value=4.6e-16 Score=137.82 Aligned_cols=117 Identities=38% Similarity=0.830 Sum_probs=101.8
Q ss_pred HHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EE--ecCCCCeecc
Q 007897 389 DLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TS--VLEPGGFLGD 465 (585)
Q Consensus 389 ~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~--~l~~G~~fGe 465 (585)
++++++|+|..++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|++. ..++|++. +. .+++|++||+
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~-~~~~g~~~~~~~~~l~~G~~fGe 84 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESV-TTDGGRSGFYNRSLLKEGDFCGD 84 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEE-CCSSCSSSSSCEEECCTTCBSST
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-EcCCCcceeeeeeeecCCCEecH
Confidence 46789999999999999999999999999999999999999999999999999965 55677764 44 9999999999
Q ss_pred cchhhcccCCccCCCC-----cceeEEEEecceEEEEecHHHHHHHHHHhh
Q 007897 466 ELLSWCLRRPFIDRLP-----ASSATFVCMESIEAFGLDAKNLRYITDHFR 511 (585)
Q Consensus 466 ~~ll~~l~~~~~~~~p-----~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p 511 (585)
.++++. +.+.| .++++++|.++|+++.|++++|.++++++|
T Consensus 85 ~~l~~~-----~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p 130 (137)
T 1wgp_A 85 ELLTWA-----LDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFR 130 (137)
T ss_dssp HHHHHH-----HCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHC
T ss_pred HHHHHH-----hccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCH
Confidence 975221 13332 367999999999999999999999999999
No 26
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.62 E-value=2e-15 Score=136.77 Aligned_cols=114 Identities=24% Similarity=0.319 Sum_probs=103.8
Q ss_pred HHHHHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeec
Q 007897 385 YLCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLG 464 (585)
Q Consensus 385 ~~~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fG 464 (585)
....++++++|+|.+++++.+..++..++...|.+|++|+++||.++.+|||.+|.|+++. +|+ .+..+++|++||
T Consensus 34 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~~~-~~~~~~~G~~fG 109 (154)
T 3pna_A 34 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NNE-WATSVGEGGSFG 109 (154)
T ss_dssp HHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE---TTE-EEEEECTTCEEC
T ss_pred HHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE---CCE-EEEEecCCCEee
Confidence 3446789999999999999999999999999999999999999999999999999999986 454 478899999999
Q ss_pred ccchhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhh
Q 007897 465 DELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFR 511 (585)
Q Consensus 465 e~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p 511 (585)
+.+++ .+.| ++++++|.++|+++.|++++|.++++++|
T Consensus 110 e~~~~--------~~~~-~~~~v~A~~~~~~~~i~~~~~~~ll~~~~ 147 (154)
T 3pna_A 110 ELALI--------YGTP-RAATVKAKTNVKLWGIDRDSYRRILMGST 147 (154)
T ss_dssp CHHHH--------HCCC-CSSEEEESSCEEEEEEEHHHHHHHTHHHH
T ss_pred ehHhh--------cCCC-cceEEEECcceEEEEEeHHHHHHHHHhCh
Confidence 98664 4555 78999999999999999999999999998
No 27
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.62 E-value=1.6e-15 Score=147.23 Aligned_cols=125 Identities=17% Similarity=0.266 Sum_probs=105.9
Q ss_pred hcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeecccchhh
Q 007897 392 KKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDELLSW 470 (585)
Q Consensus 392 ~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~~ll~ 470 (585)
.++|+|..++++.++.++..++...|+||++|+++||+++.+|||.+|.|+++..+++|++. +..+++|++||+.+++
T Consensus 13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~- 91 (232)
T 2gau_A 13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYF- 91 (232)
T ss_dssp GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHH-
T ss_pred cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhh-
Confidence 35789999999999999999999999999999999999999999999999999877778776 8999999999998653
Q ss_pred cccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 007897 471 CLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYY 526 (585)
Q Consensus 471 ~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r~~ 526 (585)
.+.| ++++++|.++|+++.|++++|.++++++| .+....++...+..
T Consensus 92 -------~~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p-~~~~~~~~~l~~~l 138 (232)
T 2gau_A 92 -------AEET-CSSTAIAVENSKVLAIPVEAIEALLKGNT-SFCRYFLKALAKEL 138 (232)
T ss_dssp -------HTSC-CSSEEEESSCEEEEEEEHHHHHHHHHHCH-HHHHHHHHHHHHHH
T ss_pred -------CCCC-cceEEEEecceEEEEEEHHHHHHHHHHCH-HHHHHHHHHHHHHH
Confidence 4555 88999999999999999999999999999 56655555544443
No 28
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.62 E-value=2.7e-15 Score=153.92 Aligned_cols=122 Identities=18% Similarity=0.306 Sum_probs=110.4
Q ss_pred HHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccc
Q 007897 388 LDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDEL 467 (585)
Q Consensus 388 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ 467 (585)
.+.++++|+|++++++.+..++..++.+.|.+|++|+++||+++.+|||.+|.|+++..+.+|++.+..+++|++||+.+
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fGe~~ 91 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIA 91 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTCEESHHH
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCCEeeHHH
Confidence 46889999999999999999999999999999999999999999999999999999998888888899999999999997
Q ss_pred hhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHH
Q 007897 468 LSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLK 520 (585)
Q Consensus 468 ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~ 520 (585)
++ .+.| ++++++|.++|+++.|++++|.+++ ++| .+....++
T Consensus 92 l~--------~~~~-~~~~v~A~~~~~~~~i~~~~~~~l~-~~p-~~~~~~~~ 133 (333)
T 4ava_A 92 LL--------RDSP-RSATVTTIEPLTGWTGGRGAFATMV-HIP-GVGERLLR 133 (333)
T ss_dssp HH--------HTCB-CSSEEEESSCEEEEEECHHHHHHHH-HST-THHHHHHH
T ss_pred hc--------CCCC-ceEEEEEecCEEEEEEcHHHHHHHH-hCh-HHHHHHHH
Confidence 64 4555 8999999999999999999999999 899 44444433
No 29
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.61 E-value=1e-14 Score=138.98 Aligned_cols=123 Identities=19% Similarity=0.203 Sum_probs=105.0
Q ss_pred CCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeecccchhhccc
Q 007897 395 PLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDELLSWCLR 473 (585)
Q Consensus 395 ~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~~ll~~l~ 473 (585)
++++.++++.++.++..++.+.|++|++|+++|++++.+|||.+|.|+++..+++|++. +..+++|++||+.++
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~----- 76 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGL----- 76 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTT-----
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHH-----
Confidence 46678999999999999999999999999999999999999999999999988889887 899999999999855
Q ss_pred CCccCCC-CcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 007897 474 RPFIDRL-PASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYS 527 (585)
Q Consensus 474 ~~~~~~~-p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r~~s 527 (585)
+.+. | ++++++|.++|+++.+++++|.++++++| .+....++..++...
T Consensus 77 ---~~~~~~-~~~~~~a~~~~~v~~i~~~~~~~l~~~~p-~~~~~~~~~l~~~l~ 126 (210)
T 3ryp_A 77 ---FEEGQE-RSAWVRAKTACEVAEISYKKFRQLIQVNP-DILMRLSAQMARRLQ 126 (210)
T ss_dssp ---TSTTCB-CSSEEEESSCEEEEEEEHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred ---hcCCCC-ceEEEEECCcEEEEEEcHHHHHHHHHHCh-HHHHHHHHHHHHHHH
Confidence 3444 4 88999999999999999999999999999 566656555554443
No 30
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.61 E-value=4.8e-16 Score=137.38 Aligned_cols=123 Identities=15% Similarity=0.236 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhcceEEeC-CCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEE
Q 007897 376 EGLRRGIKRYLCLDLIKKVPLFHNLDDLILDNICDRVRPLVYS-KDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVAT 454 (585)
Q Consensus 376 ~~Lr~~i~~~~~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~-~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~ 454 (585)
|+.|.+-......++++++++|..++++.++.++..++.+.|. +|++|+++||.++.+|||.+|.|+++. .+|++
T Consensus 3 p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~~g~~-- 78 (134)
T 2d93_A 3 SGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH--PDGKV-- 78 (134)
T ss_dssp CSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC--SSSCE--
T ss_pred hhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc--CCCcE--
Confidence 3344443344456788999999999999999999999999999 999999999999999999999999985 67776
Q ss_pred EecCCCCeecccchhhcccCCccCCCCcceeEE-EEecceEEEEecHHHHHHHHHHhh
Q 007897 455 SVLEPGGFLGDELLSWCLRRPFIDRLPASSATF-VCMESIEAFGLDAKNLRYITDHFR 511 (585)
Q Consensus 455 ~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv-~A~t~~~l~~l~~~~f~~ll~~~p 511 (585)
..+++|++||+.++ +.+.| +.+++ +|.++|+++.|++++|.+++++++
T Consensus 79 ~~l~~G~~fG~~~~--------~~~~~-~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~ 127 (134)
T 2d93_A 79 ENLFMGNSFGITPT--------LDKQY-MHGIVRTKVDDCQFVCIAQQDYWRILNHVE 127 (134)
T ss_dssp EEECTTCEESCCSS--------SCCEE-CCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred EEecCCCccChhHh--------cCCCc-ceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence 66899999999855 45555 77788 999999999999999999998776
No 31
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.60 E-value=1.9e-14 Score=136.79 Aligned_cols=118 Identities=18% Similarity=0.217 Sum_probs=103.2
Q ss_pred CcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeecccchhhcccCCccC
Q 007897 400 LDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDELLSWCLRRPFID 478 (585)
Q Consensus 400 ~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~~ll~~l~~~~~~ 478 (585)
++++.++.++..++...|+||++|+++||+++.+|||.+|.|+++..+++|++. +..+++|++||+.++ +.
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~--------~~ 72 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGL--------FE 72 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTT--------CC
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHH--------hc
Confidence 578999999999999999999999999999999999999999999888889886 999999999999855 44
Q ss_pred CC----CcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 007897 479 RL----PASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYS 527 (585)
Q Consensus 479 ~~----p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r~~s 527 (585)
+. | ++++++|.++|+++.|++++|.++++++| .+....++..++...
T Consensus 73 ~~~~~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p-~~~~~~~~~l~~~~~ 123 (207)
T 2oz6_A 73 KEGSEQE-RSAWVRAKVECEVAEISYAKFRELSQQDS-EILYTLGSQMADRLR 123 (207)
T ss_dssp -----CB-CCSEEEESSCEEEEEEEHHHHHHHHHHCH-HHHHHHHHHHHHHHH
T ss_pred CCCCCCC-cceEEEECCcEEEEEECHHHHHHHHHHCH-HHHHHHHHHHHHHHH
Confidence 44 5 88999999999999999999999999999 566666665554444
No 32
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.57 E-value=2.8e-14 Score=143.32 Aligned_cols=125 Identities=19% Similarity=0.373 Sum_probs=108.9
Q ss_pred HHHHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCC-cE-EEEecCCCCee
Q 007897 386 LCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKG-MV-ATSVLEPGGFL 463 (585)
Q Consensus 386 ~~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g-~~-~~~~l~~G~~f 463 (585)
+...+++++++|..+++..+..++..++...|.+|++|+++||.++.+|+|.+|.|+++....+| ++ .+..+++|++|
T Consensus 154 ~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~f 233 (291)
T 2qcs_B 154 MYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYF 233 (291)
T ss_dssp HHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEE
T ss_pred HHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEe
Confidence 34567788999999999999999999999999999999999999999999999999999765555 33 38999999999
Q ss_pred cccchhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHH
Q 007897 464 GDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLK 520 (585)
Q Consensus 464 Ge~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~ 520 (585)
||.++ +.+.| ++++++|.++|+++.|++++|.+++..+| .+....++
T Consensus 234 Ge~~l--------l~~~~-~~~tv~a~~~~~~~~i~~~~f~~~l~~~p-~~~~~~~~ 280 (291)
T 2qcs_B 234 GEIAL--------LMNRP-KAATVVARGPLKCVKLDRPRFERVLGPCS-DILKRNIQ 280 (291)
T ss_dssp CSGGG--------TCCCC-CSSEEEEEEEEEEEEEEHHHHHHHHCCHH-HHHTTSHH
T ss_pred cHHHH--------cCCCC-cceEEEECCcEEEEEEcHHHHHHHhccHH-HHHHHHHH
Confidence 99866 45666 89999999999999999999999999999 34443333
No 33
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.56 E-value=5.4e-15 Score=149.25 Aligned_cols=127 Identities=19% Similarity=0.360 Sum_probs=111.5
Q ss_pred HHHHHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEec-CCCcEE-EEecCCCCe
Q 007897 385 YLCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSL-SKGMVA-TSVLEPGGF 462 (585)
Q Consensus 385 ~~~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~-~~g~~~-~~~l~~G~~ 462 (585)
..+..+++++|+|..++++.+..++..++.+.|.+|++|+++||.++.+|+|.+|.|+++... .+|++. +..+++|++
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~ 232 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDW 232 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCE
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCE
Confidence 345678889999999999999999999999999999999999999999999999999999876 567765 899999999
Q ss_pred ecccchhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHH
Q 007897 463 LGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKR 521 (585)
Q Consensus 463 fGe~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~ 521 (585)
||+.++ +.+.| ++++++|.++|+++.|++++|.+++..+| .+....++.
T Consensus 233 fGe~~l--------l~~~~-~~~tv~a~~~~~l~~i~~~~f~~ll~~~p-~~~~~~~~~ 281 (299)
T 3shr_A 233 FGEKAL--------QGEDV-RTANVIAAEAVTCLVIDRDSFKHLIGGLD-DVSNKAYED 281 (299)
T ss_dssp ECGGGG--------SSSEE-CSSEEEESSSEEEEEEEHHHHHHHHTTCC-CCCHHHHHH
T ss_pred eChHHH--------hCCCC-cceEEEECCCEEEEEEeHHHHHHHHccHH-HHHHHHHHH
Confidence 999966 45556 89999999999999999999999999999 344444443
No 34
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.55 E-value=1.1e-14 Score=139.93 Aligned_cols=122 Identities=16% Similarity=0.204 Sum_probs=108.3
Q ss_pred HHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeecccc
Q 007897 389 DLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDEL 467 (585)
Q Consensus 389 ~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~~ 467 (585)
.+++++|+|..++++.++.++..++...|++|++|+++||+++.+|||.+|.|+++ ...+|++. +..+++|++||+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~~G~-- 80 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVY-LAYEDKEFTLAILEAGDIFCT-- 80 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEE-EECSSCEEEEEEEETTCEEES--
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEeCC--
Confidence 46788999999999999999999999999999999999999999999999999996 66788876 899999999998
Q ss_pred hhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHHhhhh
Q 007897 468 LSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSS 528 (585)
Q Consensus 468 ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r~~s~ 528 (585)
| ++++++|.++|+++.|++++|.++++++| .+....++...+....
T Consensus 81 -------------~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p-~~~~~~~~~~~~~~~~ 126 (220)
T 2fmy_A 81 -------------H-TRAFIQAMEDTTILYTDIRNFQNIVVEFP-AFSLNMVKVLGDLLKN 126 (220)
T ss_dssp -------------C-SSSEEEESSSEEEEEEEHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred -------------c-cceEEEEcCcEEEEEEeHHHHHHHHHHCH-HHHHHHHHHHHHHHHH
Confidence 1 67899999999999999999999999999 5666666655554443
No 35
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.55 E-value=6.5e-14 Score=138.47 Aligned_cols=120 Identities=18% Similarity=0.217 Sum_probs=102.8
Q ss_pred CCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeecccchhhcccCCc
Q 007897 398 HNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDELLSWCLRRPF 476 (585)
Q Consensus 398 ~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~~ll~~l~~~~ 476 (585)
..++++.++.++..++...|++|++|+++||+++.+|||.+|.|+++..+.+|++. +..+++|++||+.++
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~-------- 126 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGL-------- 126 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTT--------
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHH--------
Confidence 45899999999999999999999999999999999999999999999988889886 999999999999855
Q ss_pred cCCC-CcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 007897 477 IDRL-PASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYS 527 (585)
Q Consensus 477 ~~~~-p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r~~s 527 (585)
+.+. | ++++++|.++|+++.|++++|.++++++| .+....++...+...
T Consensus 127 ~~~~~~-~~~~~~A~~~~~l~~i~~~~~~~l~~~~p-~l~~~l~~~l~~~l~ 176 (260)
T 3kcc_A 127 FEEGQE-RSAWVRAKTACEVAEISYKKFRQLIQVNP-DILMRLSAQMARRLQ 176 (260)
T ss_dssp TSTTCB-CCSEEEESSCEEEEEEEHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred hCCCCC-CceEEEECCCeEEEEEcHHHHHHHHHHCH-HHHHHHHHHHHHHHH
Confidence 3454 4 88999999999999999999999999999 566655555544443
No 36
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.54 E-value=2.7e-14 Score=136.72 Aligned_cols=122 Identities=13% Similarity=0.199 Sum_probs=100.2
Q ss_pred CCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeecccchhhcc
Q 007897 394 VPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDELLSWCL 472 (585)
Q Consensus 394 v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~~ll~~l 472 (585)
-|.|...++.....+...++.+.|.+|++|+++||.++.+|||.+|.|+++..+++|++. +..+++|++||+.++
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~---- 79 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFI---- 79 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGT----
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHH----
Confidence 367777888889999999999999999999999999999999999999999888889887 899999999999855
Q ss_pred cCCccCCC-CcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 007897 473 RRPFIDRL-PASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARY 525 (585)
Q Consensus 473 ~~~~~~~~-p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r~ 525 (585)
+.+. | +.++++|.++|+++.|++++|.++++++| .+....++..++.
T Consensus 80 ----~~~~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p-~~~~~l~~~l~~~ 127 (213)
T 1o5l_A 80 ----FSSEPR-FPVNVVAGENSKILSIPKEVFLDLLMKDR-ELLLFFLKDVSEH 127 (213)
T ss_dssp ----TSSSCB-CSSEEEESSSEEEEEEEHHHHHHHHHHCH-HHHHHHHHHHHHH
T ss_pred ----hcCCCC-ceEEEEEccceEEEEEeHHHHHHHHHHCH-HHHHHHHHHHHHH
Confidence 3443 4 88999999999999999999999999999 5655555554444
No 37
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.54 E-value=9.1e-14 Score=124.84 Aligned_cols=86 Identities=19% Similarity=0.238 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHH----HHHHHHHHHHHHHHH
Q 007897 265 ILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQV------FLHA----VMAKKRKMQLRCRDM 334 (585)
Q Consensus 265 Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~------il~~----~~~~~~~~~~~~~~v 334 (585)
|..|+||+++|+||+||||+.|.+..+++++++.+++|++++++.+|++++ +... .+....+..++++++
T Consensus 53 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i 132 (148)
T 3vou_A 53 PLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAI 132 (148)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999988999999999999999999999999987 3332 345555667789999
Q ss_pred HHHHHhcCCCHHHHHH
Q 007897 335 EWWMRRRQLPSRLRQR 350 (585)
Q Consensus 335 ~~~m~~~~lp~~L~~r 350 (585)
++++++++.|++|+.|
T Consensus 133 ~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 133 EKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHTTC------
T ss_pred HHHHHhcCCCcCCCCC
Confidence 9999999999999876
No 38
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.54 E-value=1.3e-14 Score=139.70 Aligned_cols=144 Identities=13% Similarity=0.027 Sum_probs=119.5
Q ss_pred HhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeecccch
Q 007897 390 LIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDELL 468 (585)
Q Consensus 390 ~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~~l 468 (585)
+++++|+|..++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|+++ ...+|++. +..+++|++|| .
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~fG-~-- 76 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVY-LVGEEREISLFYLTSGDMFC-M-- 76 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEE-EEETTEEEEEEEEETTCEEE-S--
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEec-C--
Confidence 3678999999999999999999999999999999999999999999999999997 66788876 89999999999 2
Q ss_pred hhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhh
Q 007897 469 SWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRMR 548 (585)
Q Consensus 469 l~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r~~s~~~~~~~~~~~~~~~~~~~~r 548 (585)
.++++++|.++|+++.|++++|.++++++| .+....++..++......+.........+..|..+-
T Consensus 77 -------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p-~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~ 142 (222)
T 1ft9_A 77 -------------HSGCLVEATERTEVRFADIRTFEQKLQTCP-SMAWGLIAILGRALTSCMRTIEDLMFHDIKQRIAGF 142 (222)
T ss_dssp -------------CSSCEEEESSCEEEEEECHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred -------------CCCEEEEEccceEEEEEeHHHHHHHHHHCh-HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 278999999999999999999999999999 577666666666555444444444555555566555
Q ss_pred ccC
Q 007897 549 TRG 551 (585)
Q Consensus 549 ~~~ 551 (585)
+..
T Consensus 143 L~~ 145 (222)
T 1ft9_A 143 FID 145 (222)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 39
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.53 E-value=9.7e-14 Score=139.33 Aligned_cols=127 Identities=22% Similarity=0.277 Sum_probs=110.5
Q ss_pred HHHHHHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCee
Q 007897 384 RYLCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFL 463 (585)
Q Consensus 384 ~~~~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~f 463 (585)
.+...+.++++|+|++++++.+..++..++...|.+|++|+++||.++.+|+|.+|.|+++. +|. .+..+++|++|
T Consensus 34 ~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~g~-~~~~l~~G~~f 109 (291)
T 2qcs_B 34 MAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NNE-WATSVGEGGSF 109 (291)
T ss_dssp HHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE---TTE-EEEEECTTCEE
T ss_pred HHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE---CCe-EEEEcCCCCcc
Confidence 34557889999999999999999999999999999999999999999999999999999987 454 48899999999
Q ss_pred cccchhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHH
Q 007897 464 GDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTAR 524 (585)
Q Consensus 464 Ge~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r 524 (585)
|+.++ +.+.| ++++++|.++|+++.|++++|.+++..+| ......++...+
T Consensus 110 Ge~~l--------~~~~~-~~~tv~a~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~l~ 160 (291)
T 2qcs_B 110 GELAL--------IYGTP-RAATVKAKTNVKLWGIDRDSYRRILMGST-LRKRKMYEEFLS 160 (291)
T ss_dssp CGGGG--------TCCCB-CSSEEEESSCEEEEEEEHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred chHHH--------hcCCC-CceEEEECCCEEEEEEEhHHHHHHHhhhH-HHHHHHHHHHHh
Confidence 99866 35556 89999999999999999999999999999 454444444433
No 40
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.52 E-value=9.8e-15 Score=129.00 Aligned_cols=92 Identities=12% Similarity=0.178 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007897 265 ILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLP 344 (585)
Q Consensus 265 Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~~~~~~~~v~~~m~~~~lp 344 (585)
|..|+||+++|+|||||||+.|.|..|+++++++|++|++++|+++|.+++.+.+....+.+.++..+..+...+..+++
T Consensus 44 ~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 123 (137)
T 4h33_A 44 YPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDLT 123 (137)
T ss_dssp HHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC---------------------
T ss_pred HHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 78999999999999999999999999999999999999999999999999988665443333333222223334445666
Q ss_pred HHHHHHHHHHHH
Q 007897 345 SRLRQRVRHYER 356 (585)
Q Consensus 345 ~~L~~rv~~y~~ 356 (585)
++.+..++++.+
T Consensus 124 ~~~i~~l~~~l~ 135 (137)
T 4h33_A 124 KEEIAVVEQFLT 135 (137)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 666666666654
No 41
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.52 E-value=2.9e-14 Score=139.21 Aligned_cols=111 Identities=21% Similarity=0.216 Sum_probs=102.3
Q ss_pred HHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccc
Q 007897 388 LDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDEL 467 (585)
Q Consensus 388 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ 467 (585)
.+.++++|+|++++++.+..++..++.+.|.+|++|+++||+++.+|+|.+|.|+++. +|+. +..+++|++||+.+
T Consensus 6 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~---~~~~-~~~~~~g~~fGe~~ 81 (246)
T 3of1_A 6 EKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV---NDNK-VNSSGPGSSFGELA 81 (246)
T ss_dssp HHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES---TTSC-CEEECTTCEECHHH
T ss_pred HHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE---CCEE-EEecCCCCeeehhH
Confidence 6788999999999999999999999999999999999999999999999999999985 4554 68899999999987
Q ss_pred hhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhh
Q 007897 468 LSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFR 511 (585)
Q Consensus 468 ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p 511 (585)
++ .+.| ++++++|.++|+++.|++++|.+++..+|
T Consensus 82 l~--------~~~~-~~~tv~a~~~~~~~~i~~~~~~~~~~~~~ 116 (246)
T 3of1_A 82 LM--------YNSP-RAATVVATSDCLLWALDRLTFRKILLGSS 116 (246)
T ss_dssp HH--------HTCC-CSSEEEESSCEEEEEEEHHHHHHTTTTTT
T ss_pred Hh--------cCCC-CCcEEEECCCeEEEEEEhHHHHHHHHHhH
Confidence 74 4555 88999999999999999999999999999
No 42
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.52 E-value=2.1e-14 Score=129.14 Aligned_cols=61 Identities=10% Similarity=0.254 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 264 KILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKK 324 (585)
Q Consensus 264 ~Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~ 324 (585)
.|..|+||+++|+||+||||+.|.+..+++++++.+++|++++++.+|.+++.+.+...++
T Consensus 84 s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~ 144 (155)
T 2a9h_A 84 SYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQER 144 (155)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC--
T ss_pred cccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999887654433
No 43
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.52 E-value=2.7e-14 Score=149.37 Aligned_cols=118 Identities=20% Similarity=0.350 Sum_probs=107.0
Q ss_pred HHHHHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCc-E-EEEecCCCCe
Q 007897 385 YLCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGM-V-ATSVLEPGGF 462 (585)
Q Consensus 385 ~~~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~-~-~~~~l~~G~~ 462 (585)
.++..+++++++|..+++..+..++..++...|.+|++|+++||.++.+|||.+|.|+++....+|. + .+..+++|++
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~ 323 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDY 323 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCE
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCE
Confidence 4556788999999999999999999999999999999999999999999999999999998655554 3 3889999999
Q ss_pred ecccchhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhh
Q 007897 463 LGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFR 511 (585)
Q Consensus 463 fGe~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p 511 (585)
|||.++ +.+.| |+++++|.++|+++.|++++|.+++..+|
T Consensus 324 fGe~al--------l~~~~-r~~tv~A~~~~~ll~i~~~~f~~ll~~~~ 363 (381)
T 4din_B 324 FGEIAL--------LLNRP-RAATVVARGPLKCVKLDRPRFERVLGPCS 363 (381)
T ss_dssp ECTTGG--------GSCCB-CSSEEEESSCBEEEEEEHHHHHHHHCCHH
T ss_pred echHHH--------hCCCC-ceeEEEEcCCEEEEEEeHHHHHHHHhhhH
Confidence 999976 45666 89999999999999999999999999999
No 44
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.51 E-value=4.8e-14 Score=149.06 Aligned_cols=121 Identities=22% Similarity=0.272 Sum_probs=110.1
Q ss_pred HHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCC
Q 007897 381 GIKRYLCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEP 459 (585)
Q Consensus 381 ~i~~~~~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~ 459 (585)
+-..+...+.++++++|++++++.+..|+..++.+.|.+|++|+++||.++.+|||.+|.|+++. ..+|++. +..+++
T Consensus 137 ~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~-~~~G~~~~v~~l~~ 215 (416)
T 3tnp_B 137 DDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDN 215 (416)
T ss_dssp HHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEE-ECSSCEEEEEEEES
T ss_pred HHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEE-ecCCCEEEEEEecC
Confidence 33455567899999999999999999999999999999999999999999999999999999998 4677766 899999
Q ss_pred CCeecccchhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhh
Q 007897 460 GGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFR 511 (585)
Q Consensus 460 G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p 511 (585)
|++||+.+++ .+.| +.++++|.++|+++.|++++|.+++..+|
T Consensus 216 G~~fGe~all--------~~~p-r~atv~A~~d~~l~~i~r~~f~~ll~~~~ 258 (416)
T 3tnp_B 216 RGSFGELALM--------YNTP-KAATITATSPGALWGLDRVTFRRIIVKNN 258 (416)
T ss_dssp CCEECGGGGT--------SCCC-CSSEEEESSSEEEEEEEHHHHHHHHHHHH
T ss_pred CCEEeeHHHh--------cCCC-cccEEEEccCeEEEEEeehhhhhhhhcch
Confidence 9999999763 5566 89999999999999999999999999999
No 45
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.51 E-value=4.1e-14 Score=138.15 Aligned_cols=115 Identities=21% Similarity=0.314 Sum_probs=103.4
Q ss_pred HHHHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 386 LCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 386 ~~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
+...+++++++|+++++..+..++..++.+.|.+|++|+++||.++.+|+|.+|.|+++... ...+..+++|++|||
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~---~~~~~~l~~g~~fGe 198 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKG---QGVINKLKDHDYFGE 198 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETT---TEEEEEEETTCEECH
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcC---CceEEEcCCCCcccH
Confidence 34567888999999999999999999999999999999999999999999999999998742 225889999999999
Q ss_pred cchhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhH
Q 007897 466 ELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRY 512 (585)
Q Consensus 466 ~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~ 512 (585)
.+++ .+.| ++++++|.++|+++.|++++|.+++..+|+
T Consensus 199 ~~~~--------~~~~-~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~ 236 (246)
T 3of1_A 199 VALL--------NDLP-RQATVTATKRTKVATLGKSGFQRLLGPAVD 236 (246)
T ss_dssp HHHH--------HTCB-CSSEEEESSCEEEEEEEHHHHHHHCTTHHH
T ss_pred HHHh--------CCCC-cccEEEECCCEEEEEEeHHHHHHHhccHHH
Confidence 9764 4556 899999999999999999999999999993
No 46
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.50 E-value=1.2e-13 Score=148.48 Aligned_cols=130 Identities=21% Similarity=0.251 Sum_probs=118.3
Q ss_pred hCchHHHHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCc-
Q 007897 373 DLPEGLRRGIKRYLCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGM- 451 (585)
Q Consensus 373 ~Lp~~Lr~~i~~~~~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~- 451 (585)
..|+..|.+...+...+.++++++|++++++.+..++..++...|.+|++|+++||.++.+|+|.+|.|+++....+|+
T Consensus 26 ~~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~ 105 (469)
T 1o7f_A 26 DKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQ 105 (469)
T ss_dssp TSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGG
T ss_pred cCChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCC
Confidence 3577778888888889999999999999999999999999999999999999999999999999999999998877875
Q ss_pred --EEEEecCCCCeecccchhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhH
Q 007897 452 --VATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRY 512 (585)
Q Consensus 452 --~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~ 512 (585)
..+..+++|++||+.+ + .+.| ++++++|.++|+++.|++++|.+++.++|.
T Consensus 106 ~~~~~~~~~~G~~fGe~~-l--------~~~~-~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~ 158 (469)
T 1o7f_A 106 DAVTICTLGIGTAFGESI-L--------DNTP-RHATIVTRESSELLRIEQEDFKALWEKYRQ 158 (469)
T ss_dssp GCEEEEEECTTCEECGGG-G--------GTCB-CSSEEEESSSEEEEEEEHHHHHHHHHHHGG
T ss_pred cceEEEEccCCCCcchhh-h--------CCCC-ccceEEEccceeEEEEcHHHHHHHHHhCHH
Confidence 3499999999999985 3 4555 899999999999999999999999999993
No 47
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.48 E-value=1.6e-13 Score=134.72 Aligned_cols=124 Identities=17% Similarity=0.133 Sum_probs=106.1
Q ss_pred HhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeecccch
Q 007897 390 LIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDELL 468 (585)
Q Consensus 390 ~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~~l 468 (585)
++.++..+..++++.++.+...++.+.|++|++|+++|++++.+|||.+|.|+++..+++|++. +..+++|++||+ .+
T Consensus 10 ~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~-~l 88 (250)
T 3e6c_C 10 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK-LY 88 (250)
T ss_dssp CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC-CS
T ss_pred hhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee-ec
Confidence 3444444488999999999999999999999999999999999999999999999988899987 899999999999 32
Q ss_pred hhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 007897 469 SWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYY 526 (585)
Q Consensus 469 l~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r~~ 526 (585)
.+. ++++++|.++|+++.+++++|.+++.++| .+....++...+..
T Consensus 89 ---------~~~--~~~~~~A~~~~~v~~i~~~~~~~l~~~~p-~~~~~l~~~l~~~l 134 (250)
T 3e6c_C 89 ---------PTG--NNIYATAMEPTRTCWFSEKSLRTVFRTDE-DMIFEIFKNYLTKV 134 (250)
T ss_dssp ---------CCS--CCEEEEESSSEEEEEECHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred ---------CCC--CceEEEEcccEEEEEEcHHHHHHHHHHCH-HHHHHHHHHHHHHH
Confidence 332 67999999999999999999999999999 56555555544443
No 48
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.48 E-value=1.6e-13 Score=143.36 Aligned_cols=123 Identities=21% Similarity=0.266 Sum_probs=108.3
Q ss_pred HHHHHHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCee
Q 007897 384 RYLCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFL 463 (585)
Q Consensus 384 ~~~~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~f 463 (585)
.....+.++++++|++++++.+..++..++.+.|.+|++|+++||.++.+|+|.+|.|+++. +|+ .+..+++|++|
T Consensus 125 ~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~---~~~-~v~~l~~G~~f 200 (381)
T 4din_B 125 MTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV---NGE-WVTNISEGGSF 200 (381)
T ss_dssp HHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE---TTE-EEEEEESSCCB
T ss_pred HHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE---CCe-EeeeCCCCCEE
Confidence 34457899999999999999999999999999999999999999999999999999999996 454 47889999999
Q ss_pred cccchhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHH
Q 007897 464 GDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLK 520 (585)
Q Consensus 464 Ge~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~ 520 (585)
|+.+++ .+.| +.++++|.++|+++.|++++|.+++..+| ......+.
T Consensus 201 Ge~all--------~~~~-r~atv~A~~~~~l~~i~~~~f~~ll~~~~-~~~~~~~~ 247 (381)
T 4din_B 201 GELALI--------YGTP-RAATVKAKTDLKLWGIDRDSYRRILMGST-LRKRKMYE 247 (381)
T ss_dssp CGGGGT--------SCCB-CSSEEEESSSCEEEEEEHHHHHHHHHHHH-HHHHHHHH
T ss_pred EchHHh--------cCCC-cceEEEECCCEEEEEEchHHHHHhhhhhh-HHHHHHHH
Confidence 999763 5566 89999999999999999999999999999 34443333
No 49
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.47 E-value=9e-14 Score=146.96 Aligned_cols=115 Identities=17% Similarity=0.302 Sum_probs=101.6
Q ss_pred HHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCC------CcEE-EEecCCC
Q 007897 388 LDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSK------GMVA-TSVLEPG 460 (585)
Q Consensus 388 ~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~------g~~~-~~~l~~G 460 (585)
..+++++++|..+++..+..++..++.+.|.+|++|+++||.++.+|||.+|.|+++....+ |++. +..+++|
T Consensus 266 ~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G 345 (416)
T 3tnp_B 266 ESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRG 345 (416)
T ss_dssp SSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECTT
T ss_pred HHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCC
Confidence 45778889999999999999999999999999999999999999999999999999876554 6655 8999999
Q ss_pred CeecccchhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhh
Q 007897 461 GFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFR 511 (585)
Q Consensus 461 ~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p 511 (585)
++|||.++ +.+.| ++++++|.++|+++.|++++|.+++..+|
T Consensus 346 ~~fGE~al--------l~~~~-r~~tv~A~~~~~ll~I~~~~f~~ll~~~p 387 (416)
T 3tnp_B 346 QYFGELAL--------VTNKP-RAASAHAIGTVKCLAMDVQAFERLLGPCM 387 (416)
T ss_dssp CEESGGGG--------TCCSC-CSSEEEEEEEEEEEEEEHHHHHHHHCCHH
T ss_pred CEecHHHH--------hCCCC-ceeEEEEcCCeEEEEEEHHHHHHHhcchH
Confidence 99999976 45666 89999999999999999999999999999
No 50
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.45 E-value=3.4e-13 Score=116.68 Aligned_cols=59 Identities=10% Similarity=0.215 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 264 KILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMA 322 (585)
Q Consensus 264 ~Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~ 322 (585)
.|..|+||++.|+||+||||+.|.+..+++++++.+++|++++++.+|.+++.+.+..+
T Consensus 61 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 61 TYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999877544
No 51
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.45 E-value=2e-12 Score=125.90 Aligned_cols=119 Identities=15% Similarity=0.187 Sum_probs=97.4
Q ss_pred CCCcHHHHHHHHh--hcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeecccchhhcccC
Q 007897 398 HNLDDLILDNICD--RVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDELLSWCLRR 474 (585)
Q Consensus 398 ~~~~~~~l~~l~~--~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~~ll~~l~~ 474 (585)
++++++.+..+.. .++.+.|.+|++|+++||+++.+|||.+|.|+++..+.+|++. +..+ +|++||+.++
T Consensus 2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~------ 74 (238)
T 2bgc_A 2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGF------ 74 (238)
T ss_dssp --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBC------
T ss_pred CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhh------
Confidence 4678888888885 5999999999999999999999999999999999988899987 7778 9999999865
Q ss_pred CccCCCCc-ceeEEEEe-cceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 007897 475 PFIDRLPA-SSATFVCM-ESIEAFGLDAKNLRYITDHFRYKFANERLKRTARYY 526 (585)
Q Consensus 475 ~~~~~~p~-~~~tv~A~-t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r~~ 526 (585)
+.+.+. +..++.|. ++|+++.|++++|.+++.++| .+....++...+..
T Consensus 75 --~~~~~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p-~~~~~~~~~l~~~l 125 (238)
T 2bgc_A 75 --IDTETSVGYYNLEVISEQATAYVIKINELKELLSKNL-THFFYVFQTLQKQV 125 (238)
T ss_dssp --TTTCCBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCH-HHHHHHHHHHHHHH
T ss_pred --hcCCCcCcceeEEEEEcceEEEEEeHHHHHHHHHHCH-HHHHHHHHHHHHHH
Confidence 344431 25677777 599999999999999999999 56665555554443
No 52
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.44 E-value=1.1e-12 Score=128.14 Aligned_cols=115 Identities=13% Similarity=0.195 Sum_probs=98.2
Q ss_pred HHHHHHHHhhcc---eEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeecccchhhcccCCcc
Q 007897 402 DLILDNICDRVR---PLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDELLSWCLRRPFI 477 (585)
Q Consensus 402 ~~~l~~l~~~l~---~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~~ll~~l~~~~~ 477 (585)
+++++.+..... .+.|++|++|+++|+.++.+|||.+|.|+++..+++|++. +..+++|++||+.+++
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~-------- 101 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLL-------- 101 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHH--------
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHh--------
Confidence 667788888888 9999999999999999999999999999999988899987 9999999999998653
Q ss_pred CCCC-cceeEEEEecceEEEEecHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 007897 478 DRLP-ASSATFVCMESIEAFGLDAKNLRYITDHFRYKFANERLKRTARY 525 (585)
Q Consensus 478 ~~~p-~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~~~~~~~l~~~~r~ 525 (585)
.+.| .+.++++|.++|+++.+++++|.++++++| .+....++..++.
T Consensus 102 ~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p-~~~~~l~~~l~~~ 149 (243)
T 3la7_A 102 TGNKSDRFYHAVAFTPVELLSAPIEQVEQALKENP-ELSMLMLRGLSSR 149 (243)
T ss_dssp SSCCSBCCEEEEESSSEEEEEEEHHHHHHHHTTCH-HHHHHHHHHHHHH
T ss_pred CCCCCcceEEEEEccceEEEEEcHHHHHHHHHHCH-HHHHHHHHHHHHH
Confidence 4444 245899999999999999999999999999 5555555544433
No 53
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.41 E-value=8.9e-13 Score=141.70 Aligned_cols=114 Identities=14% Similarity=0.223 Sum_probs=102.8
Q ss_pred HHHHHhhcCCCCCCCcHHHHHHHHhhcce-EEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeec
Q 007897 386 LCLDLIKKVPLFHNLDDLILDNICDRVRP-LVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLG 464 (585)
Q Consensus 386 ~~~~~l~~v~~F~~~~~~~l~~l~~~l~~-~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fG 464 (585)
...+.++++++|.+++++.+..++..++. ..|.+|++|+++||.++.+|||.+|.|+++.. |...+..+++|++||
T Consensus 334 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~---~~~~~~~l~~G~~fG 410 (469)
T 1o7f_A 334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY---GKGVVCTLHEGDDFG 410 (469)
T ss_dssp HHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEET---TTEEEEEEETTCEEC
T ss_pred HHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEc---CCeeEEEecCCCEEE
Confidence 34678999999999999999999999985 49999999999999999999999999999873 444689999999999
Q ss_pred ccchhhcccCCccCCCCcceeEEEEec-ceEEEEecHHHHHHHHHHhh
Q 007897 465 DELLSWCLRRPFIDRLPASSATFVCME-SIEAFGLDAKNLRYITDHFR 511 (585)
Q Consensus 465 e~~ll~~l~~~~~~~~p~~~~tv~A~t-~~~l~~l~~~~f~~ll~~~p 511 (585)
+.++ +.+.| ++++++|.+ +|+++.|++++|.+++.++|
T Consensus 411 e~~l--------l~~~~-~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p 449 (469)
T 1o7f_A 411 KLAL--------VNDAP-RAASIVLREDNCHFLRVDKEDFNRILRDVE 449 (469)
T ss_dssp GGGG--------TCCSC-CSSEEEESSSSEEEEEEEHHHHHHHHHHTT
T ss_pred Eehh--------hcCCC-ceEEEEEecCCEEEEEEcHHHHHHHHHHCh
Confidence 9966 45666 899999998 69999999999999999999
No 54
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.39 E-value=3.1e-12 Score=113.62 Aligned_cols=90 Identities=11% Similarity=0.195 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Q 007897 264 KILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKK-RKMQLRCRDMEWWMRRRQ 342 (585)
Q Consensus 264 ~Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~-~~~~~~~~~v~~~m~~~~ 342 (585)
.|..|+||+++|+|||||||+.|.+..+++++++.+++|++++++++|.+++.+.+...+. .++.++.+.....+..++
T Consensus 40 ~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (139)
T 3eff_K 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGHFVRHSEKAAEEAYTRT 119 (139)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999776544333 333344433333333333
Q ss_pred CCHHHHHHHHHH
Q 007897 343 LPSRLRQRVRHY 354 (585)
Q Consensus 343 lp~~L~~rv~~y 354 (585)
+ +++.+|+.+.
T Consensus 120 ~-~~l~~~l~~l 130 (139)
T 3eff_K 120 T-RALHERFDRL 130 (139)
T ss_dssp H-HHHHHHHHHH
T ss_pred H-HHHHHHHHHH
Confidence 3 4555555543
No 55
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.37 E-value=2e-12 Score=151.61 Aligned_cols=132 Identities=20% Similarity=0.250 Sum_probs=109.8
Q ss_pred HHhhCchHHHHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCC
Q 007897 370 LIKDLPEGLRRGIKRYLCLDLIKKVPLFHNLDDLILDNICDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSK 449 (585)
Q Consensus 370 il~~Lp~~Lr~~i~~~~~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~ 449 (585)
.|+.=| .-|.+=-.++-.+.|+++++|+++++..+.+||..++.+.|.+|++|+++||.++.+|+|.+|.|.++....+
T Consensus 24 ~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~ 102 (999)
T 4f7z_A 24 CLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETS 102 (999)
T ss_dssp HHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSS
T ss_pred HhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCC
Confidence 344433 3343333334457899999999999999999999999999999999999999999999999999999875332
Q ss_pred --Cc-EEEEecCCCCeecccchhhcccCCccCCCCcceeEEEEecceEEEEecHHHHHHHHHHhhH
Q 007897 450 --GM-VATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKNLRYITDHFRY 512 (585)
Q Consensus 450 --g~-~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~f~~ll~~~p~ 512 (585)
+. ..+..+++|+.||| +++ .+.| |++|++|.++|++++|++++|+.++.+||+
T Consensus 103 ~~~~~~~v~~l~~G~sFGE-all--------~n~p-RtaTv~a~~~s~l~~l~r~~F~~i~~~~~e 158 (999)
T 4f7z_A 103 SHQDAVTICTLGIGTAFGE-SIL--------DNTP-RHATIVTRESSELLRIEQEDFKALWEKYRQ 158 (999)
T ss_dssp CTTSCEEEEEEETTCEECG-GGG--------GTCC-CSSEEEESSSEEEEEEEHHHHHHHHHHHHH
T ss_pred CCCCceeEEEecCCcchhh-hhc--------cCCC-cceEEEeccceEEEEEEHHHHHHHHHhChH
Confidence 22 34889999999999 664 4556 999999999999999999999999999994
No 56
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.31 E-value=3.4e-12 Score=142.69 Aligned_cols=130 Identities=14% Similarity=0.201 Sum_probs=110.8
Q ss_pred HHHhhCchHHHHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhcc-eEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEec
Q 007897 369 ELIKDLPEGLRRGIKRYLCLDLIKKVPLFHNLDDLILDNICDRVR-PLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSL 447 (585)
Q Consensus 369 ~il~~Lp~~Lr~~i~~~~~~~~l~~v~~F~~~~~~~l~~l~~~l~-~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~ 447 (585)
.+++..|. .|.+...+...+.++++++|.+++++.+..++..+. .+.|.+|++|+++||.++.+|||.+|.|+++..
T Consensus 13 ~iL~k~p~-~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~- 90 (694)
T 3cf6_E 13 MILRKPPG-QRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY- 90 (694)
T ss_dssp HHHHSCGG-GCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET-
T ss_pred HHHcCChh-hCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe-
Confidence 45544444 354444445577899999999999999999999998 789999999999999999999999999999974
Q ss_pred CCCcEEEEecCCCCeecccchhhcccCCccCCCCcceeEEEEec-ceEEEEecHHHHHHHHHHhh
Q 007897 448 SKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCME-SIEAFGLDAKNLRYITDHFR 511 (585)
Q Consensus 448 ~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t-~~~l~~l~~~~f~~ll~~~p 511 (585)
|+..+..+++|++||+.+++ .+.| ++++++|.+ +|+++.|++++|.++++++|
T Consensus 91 --g~~il~~l~~Gd~fGe~al~--------~~~~-~~~tv~A~edd~~ll~I~~~~f~~ll~~~p 144 (694)
T 3cf6_E 91 --GKGVVCTLHEGDDFGKLALV--------NDAP-RAASIVLREDNCHFLRVDKEDFNRILRDVE 144 (694)
T ss_dssp --TTEEEEEEETTCEECHHHHH--------HTCB-CSSEEEECSSSEEEEEEEHHHHHHHTTTTC
T ss_pred --CCEEEEEeCCCCEeehHHHh--------CCCC-ceEEEEEeeCceEEEEEeHHHHHHHHHHCH
Confidence 44568999999999998663 4555 889999999 59999999999999999998
No 57
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=99.29 E-value=1.4e-11 Score=115.97 Aligned_cols=80 Identities=16% Similarity=0.289 Sum_probs=73.6
Q ss_pred EEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeecccchhhcccCCccCCCCcceeEEEEecce
Q 007897 415 LVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESI 493 (585)
Q Consensus 415 ~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t~~ 493 (585)
+.|++|++|+++||+++.+|+|.+|.|+++..+++|++. +..+++|++||+ +++ .+.| ++++++|.++|
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~--------~~~~-~~~~~~A~~~~ 71 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EAL--------EGKA-YRYTAEAMTEA 71 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGG--------TCSB-CSSEEEESSSE
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhh--------CCCC-ceeEEEECCcE
Confidence 579999999999999999999999999999888888876 999999999999 773 4555 88999999999
Q ss_pred EEEEecHHHHH
Q 007897 494 EAFGLDAKNLR 504 (585)
Q Consensus 494 ~l~~l~~~~f~ 504 (585)
+++.|++++|.
T Consensus 72 ~v~~i~~~~~~ 82 (195)
T 3b02_A 72 VVQGLEPRAMD 82 (195)
T ss_dssp EEEEECGGGCC
T ss_pred EEEEEcHHHcC
Confidence 99999999998
No 58
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.27 E-value=1.7e-11 Score=143.75 Aligned_cols=112 Identities=14% Similarity=0.205 Sum_probs=99.4
Q ss_pred HHHHHhhcCCCCCCCcHHHHHHHHhhcceEEe-CCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeec
Q 007897 386 LCLDLIKKVPLFHNLDDLILDNICDRVRPLVY-SKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLG 464 (585)
Q Consensus 386 ~~~~~l~~v~~F~~~~~~~l~~l~~~l~~~~~-~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fG 464 (585)
...+.+.++|.|++++....+.++..+....+ .+|++|++|||.++.+|||.+|.|+++. +++..++.+++||+||
T Consensus 334 ~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~---~~~~~v~~L~~Gd~FG 410 (999)
T 4f7z_A 334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI---YGKGVVCTLHEGDDFG 410 (999)
T ss_dssp HHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEE---TTTEEEEEEETTCEEC
T ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEE---cCCcceEEecCCCccc
Confidence 34677899999999999999999999987654 6799999999999999999999999986 3445588999999999
Q ss_pred ccchhhcccCCccCCCCcceeEEEEecc-eEEEEecHHHHHHHHHH
Q 007897 465 DELLSWCLRRPFIDRLPASSATFVCMES-IEAFGLDAKNLRYITDH 509 (585)
Q Consensus 465 e~~ll~~l~~~~~~~~p~~~~tv~A~t~-~~l~~l~~~~f~~ll~~ 509 (585)
|.++ +++.| |.+|++|.++ |++++++++||.+++.+
T Consensus 411 ElAL--------L~~~P-R~aTV~a~~d~c~fl~i~k~df~~il~~ 447 (999)
T 4f7z_A 411 KLAL--------VNDAP-RAASIVLREDNCHFLRVDKEDGNRILRD 447 (999)
T ss_dssp GGGG--------TCSCB-CSSEEEESSSSEEEEEEEHHHHHHHHHH
T ss_pred chhh--------ccCCC-eeEEEEEecCceEEEEeeHHHHHHHHhH
Confidence 9977 46777 9999999985 99999999999999975
No 59
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=99.18 E-value=5.4e-11 Score=112.46 Aligned_cols=85 Identities=15% Similarity=0.182 Sum_probs=73.9
Q ss_pred HhhcceEEeCCCCEEEccCCCc--CeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeecccchhhcccCCccCCCCccee
Q 007897 409 CDRVRPLVYSKDEKIIREGDPV--PRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGDELLSWCLRRPFIDRLPASSA 485 (585)
Q Consensus 409 ~~~l~~~~~~~ge~I~~~Gd~~--~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~ 485 (585)
...++...|++|++|+++||++ +.+|||.+|.|+++..+++|++. +..+++|++||+ +++ .+.| +++
T Consensus 2 ~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l--------~~~~-~~~ 71 (202)
T 2zcw_A 2 TQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EAL--------FGQE-RIY 71 (202)
T ss_dssp ----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHH--------HTCC-BCS
T ss_pred CccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhc--------CCCC-cce
Confidence 4567899999999999999999 99999999999999888889887 899999999999 653 3445 889
Q ss_pred EEEEecceEEEEecHHHHH
Q 007897 486 TFVCMESIEAFGLDAKNLR 504 (585)
Q Consensus 486 tv~A~t~~~l~~l~~~~f~ 504 (585)
+++|.++|+++.+ +++|.
T Consensus 72 ~~~A~~~~~v~~i-~~~~~ 89 (202)
T 2zcw_A 72 FAEAATDVRLEPL-PENPD 89 (202)
T ss_dssp EEEESSCEEEEEC-CSSCC
T ss_pred EEEEcccEEEEEE-hHhcC
Confidence 9999999999999 99886
No 60
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.18 E-value=1.1e-10 Score=99.39 Aligned_cols=59 Identities=17% Similarity=0.235 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 265 ILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAK 323 (585)
Q Consensus 265 Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~ 323 (585)
|..|+||+++|+||+||||+.|.+..+++++++.+++|+.++++.++.+++.++..+..
T Consensus 50 ~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~ 108 (114)
T 2q67_A 50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 108 (114)
T ss_dssp HHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999987554433
No 61
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.14 E-value=2.3e-10 Score=94.46 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 265 ILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAV 320 (585)
Q Consensus 265 Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~ 320 (585)
|..|+||+++|+||+||||+.|.+..+++++++.+++|+.++++++|.++..++..
T Consensus 33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~ 88 (97)
T 3ouf_A 33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 88 (97)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 68999999999999999999998899999999999999999999999999887653
No 62
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.12 E-value=1.6e-11 Score=102.86 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 264 KILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAK 323 (585)
Q Consensus 264 ~Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~ 323 (585)
.|..|+||++.|+||+||||+.|.+..+++++++.+++|++++++.+|.+++.+.+..++
T Consensus 40 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~ 99 (103)
T 2k1e_A 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREEE 99 (103)
T ss_dssp CGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999989999999999999999999999999988765443
No 63
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.01 E-value=2.3e-10 Score=114.49 Aligned_cols=61 Identities=7% Similarity=-0.079 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhhccCCc-ccc-CCchh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 262 AVKILYPIFWGLMTLSTFGND-LEP-TSHWL----EVMFSICIVLSGLMLFTLLIGNIQVFLHAVMA 322 (585)
Q Consensus 262 ~~~Yl~slywa~~tlttvGyg-~~~-~~~~~----E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~ 322 (585)
+..+..|+||++.|+||+||| |+. |.+.. -..+.+++++.|.++.+..+|.+.+-++....
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345779999999999999999 863 43322 27889999999999999999999887765433
No 64
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=98.99 E-value=8.7e-10 Score=87.95 Aligned_cols=53 Identities=19% Similarity=0.417 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 265 ILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFL 317 (585)
Q Consensus 265 Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il 317 (585)
|..|+||+++|+||+||||+.|.+..+++++++.+++|..++++.++.+++.+
T Consensus 29 ~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999998999999999999999999999999999865
No 65
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=98.97 E-value=2.9e-11 Score=110.48 Aligned_cols=63 Identities=11% Similarity=0.285 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 264 KILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRK 326 (585)
Q Consensus 264 ~Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~~~~~~~ 326 (585)
.|..|+||+++|+|||||||+.|.+..+++++++.+++|++++++++|.+++.+.+...++.+
T Consensus 67 ~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~~ 129 (166)
T 3pjs_K 67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQ 129 (166)
T ss_dssp STTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999988765544433
No 66
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.75 E-value=2e-08 Score=100.25 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 264 KILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFL 317 (585)
Q Consensus 264 ~Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il 317 (585)
.|..++||++.|+||+||||+.|.+..+++++++.+++|++++|+++|.+.+.+
T Consensus 82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~ 135 (301)
T 1xl4_A 82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARF 135 (301)
T ss_dssp CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999989999999999999999999999877765
No 67
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.74 E-value=3e-08 Score=98.49 Aligned_cols=57 Identities=19% Similarity=0.252 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 264 KILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAV 320 (585)
Q Consensus 264 ~Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~ 320 (585)
.|..|+||+++|+|||||||+.|.+...++++++.+++|+.+++++++.+++.+...
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999999999999999999988654
No 68
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.66 E-value=1.4e-08 Score=102.40 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 265 ILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHA 319 (585)
Q Consensus 265 Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~ 319 (585)
|..|+||++.|+||+||||+.|.+..+++++++.+++|++++|+++|.+.+.+..
T Consensus 97 ~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~ 151 (333)
T 1p7b_A 97 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFAR 151 (333)
T ss_dssp THHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999887654
No 69
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.53 E-value=4.7e-07 Score=99.36 Aligned_cols=53 Identities=13% Similarity=0.350 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 007897 265 ILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGN-IQVFL 317 (585)
Q Consensus 265 Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~-i~~il 317 (585)
|+.|+||+++|+||+||||++|.+..+++++++++++|++++++.++. +.+.+
T Consensus 52 ~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 52 FMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999998 55554
No 70
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.53 E-value=1.2e-07 Score=95.21 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 264 KILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHA 319 (585)
Q Consensus 264 ~Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~ 319 (585)
.|..|+||++.|||||||||+.|.+...++++++.+++|++++|+++|.+.+.+..
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~ 133 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQ 133 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999999999999999999999999999999999999877654
No 71
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.52 E-value=9.5e-07 Score=88.82 Aligned_cols=55 Identities=11% Similarity=0.208 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhccCCccccCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 265 ILYPIFWGLMTLSTFGNDLEPTS--HWLEVMFSICIVLSGLMLFTLLIGNIQVFLHA 319 (585)
Q Consensus 265 Yl~slywa~~tlttvGyg~~~~~--~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~ 319 (585)
+..++|||+.|+||+||||+.|+ +...++++++.+++|+++.|+.+|.+.+-++.
T Consensus 92 f~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~sr 148 (340)
T 3sya_A 92 FVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQ 148 (340)
T ss_dssp TTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 36899999999999999998886 46788999999999999999999988665543
No 72
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.40 E-value=2.2e-06 Score=86.31 Aligned_cols=55 Identities=16% Similarity=0.300 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhhccCCccccCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 264 KILYPIFWGLMTLSTFGNDLEPTS--HWLEVMFSICIVLSGLMLFTLLIGNIQVFLH 318 (585)
Q Consensus 264 ~Yl~slywa~~tlttvGyg~~~~~--~~~E~~~~i~~~i~G~~~fa~iig~i~~il~ 318 (585)
.+..++||++.|+||+|||+..|+ +...++++.+.+++|+++.|+++|.+.+-++
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~s 150 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMA 150 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357899999999999999988653 6789999999999999999999987766543
No 73
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.38 E-value=1.1e-07 Score=94.42 Aligned_cols=57 Identities=23% Similarity=0.237 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhccCCccccCCchhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 265 ILYPIFWGLMTLSTFGNDLEPTSHWLEV------MFSICIVLSGLMLFTLLIGNIQVFLHAVM 321 (585)
Q Consensus 265 Yl~slywa~~tlttvGyg~~~~~~~~E~------~~~i~~~i~G~~~fa~iig~i~~il~~~~ 321 (585)
|+.|+||++.|+|||||||+.|.+..++ +++++.+++|+.+++++++.+++.+....
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~ 287 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVS 287 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999888776776 59999999999999999999998876554
No 74
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.37 E-value=6.6e-07 Score=87.53 Aligned_cols=55 Identities=16% Similarity=0.144 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 264 KILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLH 318 (585)
Q Consensus 264 ~Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~ 318 (585)
.|..|+||+++|+||+||||+.|.+...++++++.+++|+.+++++++.++..+.
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~ 147 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999987553
No 75
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.36 E-value=1.2e-06 Score=85.56 Aligned_cols=55 Identities=16% Similarity=0.229 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhhccCCccccCCchh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 265 ILYPIFWGLMTLSTFGNDLEPTSHWL-------EVMFSICIVLSGLMLFTLLIGNIQVFLHA 319 (585)
Q Consensus 265 Yl~slywa~~tlttvGyg~~~~~~~~-------E~~~~i~~~i~G~~~fa~iig~i~~il~~ 319 (585)
|+.|+||++.|+|||||||+.|.+.. -++++++.+++|+++++++++.+++++..
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~ 263 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHEL 263 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999998887754 49999999999999999999999987654
No 76
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.09 E-value=2.2e-07 Score=94.93 Aligned_cols=56 Identities=20% Similarity=0.408 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 265 ILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAV 320 (585)
Q Consensus 265 Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~~ 320 (585)
|..|+||+++|+||+||||+.|.+..+++++++.+++|+++++++++.+.+.+.+.
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999888889999999999999999999999999887654
No 77
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=97.59 E-value=0.00011 Score=70.38 Aligned_cols=51 Identities=10% Similarity=0.163 Sum_probs=34.0
Q ss_pred cchhhhHHHHHHhHHHHHHHHHHHhhheeecCCcccccCCeeeechHHhHHhhhccccCeeehhhhccCcc
Q 007897 28 ALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVP 98 (585)
Q Consensus 28 ~~~~~~~~~~~~~d~~f~~Di~l~F~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~~~~F~~Dlis~lP~~ 98 (585)
+....+..+|.++-++|.+|+++++... | -.++|+|+ +|=++|+++++|..
T Consensus 39 ~~~~~l~~~e~~~~~iF~~E~~lri~~~-----------~--------~~~~y~~~-~wni~D~~~v~~~~ 89 (229)
T 4dxw_A 39 LFLETIHLLDYGITIFFVIEILIRFIGE-----------K--------QKADFFKS-GWNIFDTVIVAISL 89 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----------------------------C-HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------C--------chhHHhcC-CcHHHHHHHHHHHH
Confidence 4455677899999999999999998642 1 04689998 68999988777643
No 78
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=95.60 E-value=0.0049 Score=54.28 Aligned_cols=49 Identities=6% Similarity=0.110 Sum_probs=39.3
Q ss_pred chhhhHHHHHHhHHHHHHHHHHHhhheeecCCcccccCCeeeechHHhHHhhhccccCeeehhhhccCcce
Q 007897 29 LAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQ 99 (585)
Q Consensus 29 ~~~~~~~~~~~~d~~f~~Di~l~F~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~~~~F~~Dlis~lP~~~ 99 (585)
....+..+|.++-++|.+|.++++..+ ++ .++|+|+ =++|++|++|+..
T Consensus 50 ~~~~~~~id~~~~~iF~~Ey~lRl~~a---~~----------------k~~f~~~---~iiDllailP~~~ 98 (147)
T 2kyh_A 50 YLVRLYLVDLILVIILWADYAYRAYKS---GD----------------PAGYVKK---TLYEIPALVPAGL 98 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---TC----------------HHHHHHH---STTTHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC---Cc----------------HHHHHHH---HHHHHHHHHHHHH
Confidence 344577899999999999999999875 21 4689987 2789999999753
No 79
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=93.93 E-value=0.031 Score=48.18 Aligned_cols=50 Identities=6% Similarity=0.100 Sum_probs=39.8
Q ss_pred cchhhhHHHHHHhHHHHHHHHHHHhhheeecCCcccccCCeeeechHHhHHhhhccccCeeehhhhccCcce
Q 007897 28 ALAAIVTVLRTCVDAVHLFHLWLQFRLAYVSRESLVVGCGKLVWDPRAIASHYVRSLKGFWFDVFVILPVPQ 99 (585)
Q Consensus 28 ~~~~~~~~~~~~~d~~f~~Di~l~F~t~y~~~~~~~~~~g~lV~d~~~Ia~~Ylk~~~~F~~Dlis~lP~~~ 99 (585)
+....+..+|.++-++|.+|+++++..+ ++ .++|++ |=++|+++++|+..
T Consensus 34 ~~~~~l~~~d~~~~~iFt~E~~lRl~~~---~~----------------~~~y~~---~niiDllailp~~~ 83 (132)
T 1ors_C 34 EYLVRLYLVDLILVIILWADYAYRAYKS---GD----------------PAGYVK---KTLYEIPALVPAGL 83 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT---TS----------------TTTTTT---TCGGGTGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC----------------HHHHHH---HHHHHHHHHHHHHH
Confidence 3455678899999999999999999864 11 367887 56899999999754
No 80
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=78.71 E-value=1.8 Score=25.74 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHHHhhc
Q 007897 530 WRTWAAVNIQFAWRRYRMRT 549 (585)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~r~ 549 (585)
-+.++|..||.+||+|..+.
T Consensus 4 ~Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 4 QEEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 36789999999999998654
No 81
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=76.39 E-value=2.1 Score=26.31 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHHHHHhhcc
Q 007897 530 WRTWAAVNIQFAWRRYRMRTR 550 (585)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~r~~ 550 (585)
-+.++|..||.+||+|.-+..
T Consensus 4 ~Ee~aA~vIQrA~R~yl~rr~ 24 (31)
T 2l53_B 4 SEEVSAMVIQRAFRRHLLQRS 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 367899999999999986543
No 82
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=72.69 E-value=21 Score=28.93 Aligned_cols=67 Identities=12% Similarity=0.123 Sum_probs=46.3
Q ss_pred cceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhcccCCccCCCCcceeEEEEec
Q 007897 412 VRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCME 491 (585)
Q Consensus 412 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t 491 (585)
+....+.||..+-..-....++++|++|++++.. +|++ ..+++||.+=-. .+. ..++++.+
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~~--~~l~~Gd~i~ip-----------~~~---~H~~~~~~ 98 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV---DGAQ--RRLHQGDLLYLG-----------AGA---AHDVNAIT 98 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE---TTEE--EEECTTEEEEEC-----------TTC---CEEEEESS
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEE---CCEE--EEECCCCEEEEC-----------CCC---cEEEEeCC
Confidence 3455778888877666667899999999999876 3443 679999877443 222 34566777
Q ss_pred ceEEEE
Q 007897 492 SIEAFG 497 (585)
Q Consensus 492 ~~~l~~ 497 (585)
++.++.
T Consensus 99 ~~~~~~ 104 (114)
T 3fjs_A 99 NTSLLV 104 (114)
T ss_dssp SEEEEE
T ss_pred CcEEEE
Confidence 765443
No 83
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=70.10 E-value=18 Score=33.52 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=52.7
Q ss_pred cceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhcccCCccCCCCcceeEEEEec
Q 007897 412 VRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCME 491 (585)
Q Consensus 412 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t 491 (585)
+....+.||+.+=..--+.+.+.+|++|++++.. +|++ ..+++||++=-. .+ .+..++|.+
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i---~~~~--~~l~~Gd~~~~p-----------~~---~~H~~~a~~ 99 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI---ENNK--KTISNGDFLEIT-----------AN---HNYSIEARD 99 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEE---SSCE--EEEETTEEEEEC-----------SS---CCEEEEESS
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEE---CCEE--EEECCCCEEEEC-----------CC---CCEEEEECC
Confidence 4456789999998887888999999999999986 3444 678999877433 22 346788999
Q ss_pred ceEEEEe
Q 007897 492 SIEAFGL 498 (585)
Q Consensus 492 ~~~l~~l 498 (585)
++.++.+
T Consensus 100 ~~~~l~i 106 (227)
T 3rns_A 100 NLKLIEI 106 (227)
T ss_dssp SEEEEEE
T ss_pred CcEEEEE
Confidence 9999877
No 84
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=69.99 E-value=22 Score=28.46 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=32.8
Q ss_pred EEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 415 LVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 415 ~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
..+.||..+-.......++++|++|.+.+.. +|+ ...+++||.+=-
T Consensus 43 ~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i---~~~--~~~l~~Gd~i~i 88 (114)
T 2ozj_A 43 FSFADGESVSEEEYFGDTLYLILQGEAVITF---DDQ--KIDLVPEDVLMV 88 (114)
T ss_dssp EEEETTSSCCCBCCSSCEEEEEEEEEEEEEE---TTE--EEEECTTCEEEE
T ss_pred EEECCCCccccEECCCCeEEEEEeCEEEEEE---CCE--EEEecCCCEEEE
Confidence 3456776655455567899999999999875 343 367999997743
No 85
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=61.73 E-value=41 Score=26.74 Aligned_cols=68 Identities=15% Similarity=0.166 Sum_probs=44.2
Q ss_pred cceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhcccCCccCCCCcceeEEEEec
Q 007897 412 VRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCME 491 (585)
Q Consensus 412 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t 491 (585)
+....+.||..+-..-....++++|++|.+.+.. +|+. ..+++|+.+=-. .+. ...+++.+
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~---~~~~--~~l~~Gd~~~ip-----------~~~---~H~~~~~~ 102 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI---DQET--YRVAEGQTIVMP-----------AGI---PHALYAVE 102 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE---TTEE--EEEETTCEEEEC-----------TTS---CEEEEESS
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE---CCEE--EEECCCCEEEEC-----------CCC---CEEEEECC
Confidence 3445677888765444456799999999999875 3443 578999887432 222 23455666
Q ss_pred ceEEEEe
Q 007897 492 SIEAFGL 498 (585)
Q Consensus 492 ~~~l~~l 498 (585)
+++++.+
T Consensus 103 ~~~~~~v 109 (115)
T 1yhf_A 103 AFQMLLV 109 (115)
T ss_dssp CEEEEEE
T ss_pred CceEEEE
Confidence 6666554
No 86
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=60.50 E-value=18 Score=29.75 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=34.2
Q ss_pred eEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 414 PLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 414 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
...+.||..+-..- ..+++++|++|++.+.. +|++ ..+++||.+--
T Consensus 44 ~~~~~pG~~~~~H~-~~~E~~~Vl~G~~~~~~---~g~~--~~l~~GD~v~i 89 (119)
T 3lwc_A 44 YGRYAPGQSLTETM-AVDDVMIVLEGRLSVST---DGET--VTAGPGEIVYM 89 (119)
T ss_dssp EEEECTTCEEEEEC-SSEEEEEEEEEEEEEEE---TTEE--EEECTTCEEEE
T ss_pred EEEECCCCCcCccC-CCCEEEEEEeCEEEEEE---CCEE--EEECCCCEEEE
Confidence 34567887665443 67899999999999976 4544 67999998754
No 87
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=59.12 E-value=52 Score=26.14 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=44.3
Q ss_pred cceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhcccCCccCCCCcceeEEEEec
Q 007897 412 VRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCME 491 (585)
Q Consensus 412 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t 491 (585)
+....+.||..+-..-....++++|++|.+.+.. +|+ ...+.+||.+=-. .+. ...+++.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~---~~~--~~~l~~Gd~~~ip-----------~~~---~H~~~~~~ 96 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV---DGV--IKVLTAGDSFFVP-----------PHV---DHGAVCPT 96 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE---TTE--EEEECTTCEEEEC-----------TTC---CEEEEESS
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE---CCE--EEEeCCCCEEEEC-----------cCC---ceeeEeCC
Confidence 3445677887754444446789999999999875 344 3679999986432 222 24456666
Q ss_pred ceEEEEe
Q 007897 492 SIEAFGL 498 (585)
Q Consensus 492 ~~~l~~l 498 (585)
+++++.+
T Consensus 97 ~~~~l~v 103 (116)
T 2pfw_A 97 GGILIDT 103 (116)
T ss_dssp CEEEEEE
T ss_pred CcEEEEE
Confidence 7776665
No 88
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=53.76 E-value=17 Score=32.37 Aligned_cols=48 Identities=13% Similarity=0.177 Sum_probs=33.3
Q ss_pred cceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCee
Q 007897 412 VRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFL 463 (585)
Q Consensus 412 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~f 463 (585)
+....+.||...-.......+..+|++|++++.. .+|++ ..+++||.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~l--d~ge~--~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELEL--DDGAK--RTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEEC--GGGCE--EEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEE--CCCeE--EEECCCCEE
Confidence 4455677777543333445678899999999875 22443 679999998
No 89
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=50.99 E-value=50 Score=25.31 Aligned_cols=47 Identities=9% Similarity=0.022 Sum_probs=32.7
Q ss_pred ceEEeCCCCEEEccCCC-cCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeec
Q 007897 413 RPLVYSKDEKIIREGDP-VPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLG 464 (585)
Q Consensus 413 ~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fG 464 (585)
....+.||..+-..-.. .+++++|++|.+.+.. +|+ ...+++||.+=
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~---~~~--~~~l~~Gd~~~ 78 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV---GEE--EALLAPGMAAF 78 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE---TTE--EEEECTTCEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE---CCE--EEEeCCCCEEE
Confidence 34567788776544334 3579999999999875 343 36789998774
No 90
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=50.03 E-value=39 Score=27.47 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=33.5
Q ss_pred cceEEeCCCCEEEccCCCc-CeEEEEeeeEEEEEEecCCCcEEEEecCCCCeec
Q 007897 412 VRPLVYSKDEKIIREGDPV-PRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLG 464 (585)
Q Consensus 412 l~~~~~~~ge~I~~~Gd~~-~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fG 464 (585)
+....+.||..+-..-... .++++|++|++.+.. .+|++ ..+++||.+=
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~--~~~~~--~~l~~Gd~~~ 90 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ--GNGIV--THLKAGDIAI 90 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEEC--STTCE--EEEETTEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE--CCCeE--EEeCCCCEEE
Confidence 3445678888765544453 688999999999864 24544 5788998763
No 91
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=49.99 E-value=49 Score=25.97 Aligned_cols=48 Identities=15% Similarity=0.273 Sum_probs=34.1
Q ss_pred cceEEeCCCCEEEcc--CCC-cCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeec
Q 007897 412 VRPLVYSKDEKIIRE--GDP-VPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLG 464 (585)
Q Consensus 412 l~~~~~~~ge~I~~~--Gd~-~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fG 464 (585)
+....+.||..+-.. -.. ..++++|++|.+.+.. +++. ..+++||.+=
T Consensus 23 ~~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~---~~~~--~~l~~Gd~~~ 73 (113)
T 2gu9_A 23 AAEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV---DGHT--QALQAGSLIA 73 (113)
T ss_dssp EEEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE---TTEE--EEECTTEEEE
T ss_pred EEEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE---CCEE--EEeCCCCEEE
Confidence 344567888876544 334 6799999999999876 3433 6789998764
No 92
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=49.86 E-value=59 Score=25.73 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=34.4
Q ss_pred cceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 412 VRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 412 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
+-...+.||+.-.. -...++++|++|.+.+.. .+|.. ..+++||.+=-
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i--~~g~~--~~l~~GD~i~i 80 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTT--EDGKK--YVIEKGDLVTF 80 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEE--TTCCE--EEEETTCEEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEE--CCCCE--EEECCCCEEEE
Confidence 34556778876544 446899999999999876 22443 67999998744
No 93
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=48.86 E-value=16 Score=32.50 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=38.3
Q ss_pred cceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 412 VRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 412 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
+....+.||...-..-..++++++|++|++++.....+|.+ ...+++||.+=-
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~-~~~l~~GDv~~~ 95 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD-TYKLDQGDAIKI 95 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEE-EEEEETTEEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcE-EEEECCCCEEEE
Confidence 44567788887655533458999999999998765555544 568999998743
No 94
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=47.36 E-value=34 Score=27.88 Aligned_cols=49 Identities=12% Similarity=0.130 Sum_probs=35.9
Q ss_pred cceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 412 VRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 412 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
+....+.||..+-..-....++++|++|.+.+.. +|+. ..+++|+.+=-
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~---~~~~--~~l~~Gd~~~i 91 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI---GEET--RVLRPGMAYTI 91 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE---TTEE--EEECTTEEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE---CCEE--EEeCCCCEEEE
Confidence 4456778888775555556899999999999876 3433 67899987643
No 95
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=43.56 E-value=84 Score=27.32 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=33.2
Q ss_pred ceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeec
Q 007897 413 RPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLG 464 (585)
Q Consensus 413 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fG 464 (585)
....+.||..+-..--...++++|++|.+.+.. +|+ ...+++||++=
T Consensus 59 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i---~~~--~~~l~~Gd~i~ 105 (167)
T 3ibm_A 59 RYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL---DDR--VEPLTPLDCVY 105 (167)
T ss_dssp EEEEECTTCBCCCBBCSSCEEEEEEESEEEEEE---TTE--EEEECTTCEEE
T ss_pred EEEEECCCCCCCCccCCCcEEEEEEeCEEEEEE---CCE--EEEECCCCEEE
Confidence 344566776654444457899999999999875 343 36789999874
No 96
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=43.01 E-value=22 Score=29.29 Aligned_cols=45 Identities=11% Similarity=0.082 Sum_probs=31.5
Q ss_pred eCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeeccc
Q 007897 417 YSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDE 466 (585)
Q Consensus 417 ~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~ 466 (585)
..||..-... +..++++.|++|.+.+.. ++|.. ..+++||.+---
T Consensus 49 ~tPG~~~~~~-~~~~E~~~iLeG~~~lt~--ddG~~--~~l~aGD~~~~P 93 (116)
T 3es4_A 49 AEPGIYNYAG-RDLEETFVVVEGEALYSQ--ADADP--VKIGPGSIVSIA 93 (116)
T ss_dssp ECSEEEEECC-CSEEEEEEEEECCEEEEE--TTCCC--EEECTTEEEEEC
T ss_pred cCCceeECee-CCCcEEEEEEEeEEEEEe--CCCeE--EEECCCCEEEEC
Confidence 4555544443 334599999999999976 45654 679999988543
No 97
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=42.29 E-value=24 Score=39.47 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhhccCCccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007897 264 KILYPIFWGLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHA 319 (585)
Q Consensus 264 ~Yl~slywa~~tlttvGyg~~~~~~~~E~~~~i~~~i~G~~~fa~iig~i~~il~~ 319 (585)
....++++++.+++..|. +.+|.+...+++.++++++++++.+.-.+++++++..
T Consensus 563 ~~~~~~~~~~~~l~~~g~-~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQGA-DISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCC-CcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 356789999999988886 4566677999999999999999999999999998865
No 98
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=42.21 E-value=21 Score=27.86 Aligned_cols=50 Identities=16% Similarity=0.100 Sum_probs=32.5
Q ss_pred ceEEeCCCCEEEccCCCcC-eEEEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 413 RPLVYSKDEKIIREGDPVP-RMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 413 ~~~~~~~ge~I~~~Gd~~~-~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
....+.||...-..--... ++++|++|.+++.. .+|.+ ...+.+||.+=.
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~--~~g~~-~~~l~~Gd~~~~ 71 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLET--PEGSV-TSQLTRGVSYTR 71 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEE--TTEEE-EEEECTTCCEEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEe--CCCCE-EEEEcCCCEEEe
Confidence 3456777776432223334 59999999999876 34422 367999998744
No 99
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=41.10 E-value=84 Score=28.84 Aligned_cols=67 Identities=13% Similarity=0.105 Sum_probs=47.3
Q ss_pred cceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhcccCCccCCCCcceeEEEE-e
Q 007897 412 VRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVC-M 490 (585)
Q Consensus 412 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A-~ 490 (585)
+....+.||+.+-..-.+.++++++++|.+++.. +|+. ..+++||.+=-. .+ .+..+++ .
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i---~g~~--~~l~~Gd~i~ip-----------~~---~~H~~~~~~ 215 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV---DGKP--FIVKKGESAVLP-----------AN---IPHAVEAET 215 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE---TTEE--EEEETTEEEEEC-----------TT---SCEEEECCS
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE---CCEE--EEECCCCEEEEC-----------CC---CcEEEEeCC
Confidence 4567889999887666667889999999999876 3443 678999886432 22 2345666 7
Q ss_pred cceEEEE
Q 007897 491 ESIEAFG 497 (585)
Q Consensus 491 t~~~l~~ 497 (585)
++++++.
T Consensus 216 ~~~~~ll 222 (227)
T 3rns_A 216 ENFKMLL 222 (227)
T ss_dssp SCEEEEE
T ss_pred CCEEEEE
Confidence 7776654
No 100
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=40.90 E-value=65 Score=28.48 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=28.0
Q ss_pred CcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeeccc
Q 007897 429 PVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDE 466 (585)
Q Consensus 429 ~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~ 466 (585)
+.++++++++|.+.+-..+ +|+.....+++||+|=--
T Consensus 54 ~~dE~FyvlkG~m~i~v~d-~g~~~~v~l~eGE~f~lP 90 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNLWV-DGRRERADLKEGDIFLLP 90 (174)
T ss_dssp SSCEEEEEEESCEEEEEEE-TTEEEEEEECTTCEEEEC
T ss_pred CCceEEEEEeeEEEEEEEc-CCceeeEEECCCCEEEeC
Confidence 4689999999999987653 354345789999998543
No 101
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=40.88 E-value=37 Score=34.16 Aligned_cols=53 Identities=8% Similarity=-0.026 Sum_probs=39.0
Q ss_pred cceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeec
Q 007897 412 VRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLG 464 (585)
Q Consensus 412 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fG 464 (585)
+....+.||...-..-....++.+|++|++++...+.+|+.....+++||++=
T Consensus 81 ~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~~ 133 (385)
T 1j58_A 81 SVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWY 133 (385)
T ss_dssp EEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEE
T ss_pred EEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEEEEeCCCCEEE
Confidence 34556788886644433478999999999999876666775445899999763
No 102
>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A
Probab=40.82 E-value=68 Score=32.16 Aligned_cols=54 Identities=11% Similarity=0.003 Sum_probs=38.5
Q ss_pred cceEEeCCCCEEEccCCCc-CeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 412 VRPLVYSKDEKIIREGDPV-PRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 412 l~~~~~~~ge~I~~~Gd~~-~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
+....+.||...-..-... .++++|++|++++.....+|+.....+++||.+=-
T Consensus 259 ~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~~~i 313 (385)
T 1j58_A 259 SALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYV 313 (385)
T ss_dssp EEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEEEE
T ss_pred EEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEEEEEEcCCCEEEE
Confidence 3445678888765444445 89999999999987654566433567999998754
No 103
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=40.30 E-value=19 Score=29.90 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=31.2
Q ss_pred EeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeeccc
Q 007897 416 VYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDE 466 (585)
Q Consensus 416 ~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~ 466 (585)
...||..-....+ .+++++|++|++.+.. ++|.. ..+++||.+--.
T Consensus 55 ~~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~--~~g~~--~~l~~GD~~~ip 100 (123)
T 3bcw_A 55 ESTSGSFQSNTTG-YIEYCHIIEGEARLVD--PDGTV--HAVKAGDAFIMP 100 (123)
T ss_dssp EEEEEEEECCCTT-EEEEEEEEEEEEEEEC--TTCCE--EEEETTCEEEEC
T ss_pred EECCCceeeEcCC-CcEEEEEEEEEEEEEE--CCCeE--EEECCCCEEEEC
Confidence 3445555443322 3899999999999875 35654 579999988543
No 104
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=39.38 E-value=46 Score=33.03 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=37.6
Q ss_pred ceEEeCCCCEEEccCCC-cCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeec
Q 007897 413 RPLVYSKDEKIIREGDP-VPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLG 464 (585)
Q Consensus 413 ~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fG 464 (585)
....+.||...-..-.. ..++++|++|++++...+.+|......+++||.+=
T Consensus 55 ~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD~~~ 107 (361)
T 2vqa_A 55 VYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWY 107 (361)
T ss_dssp EEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEEEEEEETTEEEE
T ss_pred EEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCCEEE
Confidence 34566788865443334 78999999999999876556653457899999764
No 105
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=37.89 E-value=45 Score=26.25 Aligned_cols=68 Identities=7% Similarity=-0.003 Sum_probs=39.7
Q ss_pred CCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhcccCCccCCCCcceeEEEEecceEEEE
Q 007897 418 SKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFG 497 (585)
Q Consensus 418 ~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~ 497 (585)
.||+.....-+...++++|++|.+.+.. .+|+. ..+++||.+=-. .+.+ ...++.+++.++.
T Consensus 36 ~~g~~~~H~H~~~~E~~~Vl~G~~~~~~--~~~~~--~~l~~Gd~~~ip-----------~~~~---H~~~~~~~~~~l~ 97 (107)
T 2i45_A 36 LLGDYGWHTHGYSDKVLFAVEGDMAVDF--ADGGS--MTIREGEMAVVP-----------KSVS---HRPRSENGCSLVL 97 (107)
T ss_dssp EEEECCCBCC--CCEEEEESSSCEEEEE--TTSCE--EEECTTEEEEEC-----------TTCC---EEEEEEEEEEEEE
T ss_pred CCCCCcceeCCCCCEEEEEEeCEEEEEE--CCCcE--EEECCCCEEEEC-----------CCCc---EeeEeCCCeEEEE
Confidence 4554332222223899999999999876 23243 679999887432 2333 2334446788887
Q ss_pred ecHHHH
Q 007897 498 LDAKNL 503 (585)
Q Consensus 498 l~~~~f 503 (585)
++....
T Consensus 98 i~~~~~ 103 (107)
T 2i45_A 98 IELSDP 103 (107)
T ss_dssp EECC--
T ss_pred EECCCc
Confidence 776544
No 106
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=37.71 E-value=1e+02 Score=26.17 Aligned_cols=62 Identities=5% Similarity=0.039 Sum_probs=40.3
Q ss_pred cCCCcCeEEEEeeeEEEEEEecC--CCc-EEEEecCCCCeecccchhhcccCCccCCCCcceeEEEEecceEEEEecHH
Q 007897 426 EGDPVPRMVFIVRGRIKRCQSLS--KGM-VATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAK 501 (585)
Q Consensus 426 ~Gd~~~~lyfI~~G~v~v~~~~~--~g~-~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~ 501 (585)
.-+..|++|+|++|.+.+...+. ++. .-...+++|+++--. .+ -..+-.|.++|+++.+...
T Consensus 46 ~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVP-----------kG---veH~p~a~~e~~vLLiEp~ 110 (140)
T 3d0j_A 46 IHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVP-----------AE---CWFYSITQKDTKMMYVQDS 110 (140)
T ss_dssp EESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEEC-----------TT---CEEEEEECTTCEEEEEEES
T ss_pred cCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeC-----------CC---ccCcccCCCceEEEEEEeC
Confidence 34567999999999999876421 111 125679999988543 11 1234556778888877654
No 107
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=37.67 E-value=67 Score=28.54 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=32.1
Q ss_pred EEeCCCCEEE---ccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 415 LVYSKDEKII---REGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 415 ~~~~~ge~I~---~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
..+.||...- .....+.++++|++|.+.+...+ .|......+++||.+=-
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~~~-~~~~~~~~l~~GD~~~~ 174 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGD-KENPKEALLPTGASMFV 174 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESC-TTSCEEEEECTTCEEEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEECC-cCCcccEEECCCCEEEe
Confidence 3566776543 12334479999999999988621 11112468999998743
No 108
>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}
Probab=36.07 E-value=63 Score=32.00 Aligned_cols=54 Identities=13% Similarity=0.054 Sum_probs=38.7
Q ss_pred cceEEeCCCCEEEccCCCc-CeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 412 VRPLVYSKDEKIIREGDPV-PRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 412 l~~~~~~~ge~I~~~Gd~~-~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
+....+.||..+-..-... .++++|++|++.+...+.+|+.....+++||.+=-
T Consensus 236 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~l~~GD~~~i 290 (361)
T 2vqa_A 236 GALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGDVGYV 290 (361)
T ss_dssp EEEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEEEEEECTTCEEEE
T ss_pred EEEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEEEEEECCCCEEEE
Confidence 4456778888765443444 89999999999987654566633578999998743
No 109
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=35.97 E-value=95 Score=28.92 Aligned_cols=50 Identities=8% Similarity=0.036 Sum_probs=37.4
Q ss_pred hcceEEeCCCCEEEc-cCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 411 RVRPLVYSKDEKIIR-EGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 411 ~l~~~~~~~ge~I~~-~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
.+....++||..+=. .-...++.++|++|+..+.. +|+. ..+++||++--
T Consensus 166 ~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~---~~~~--~~l~~GD~~~~ 216 (246)
T 1sfn_A 166 MVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL---EENY--YPVTAGDIIWM 216 (246)
T ss_dssp EEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE---TTEE--EEEETTCEEEE
T ss_pred EEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE---CCEE--EEcCCCCEEEE
Confidence 456678899987754 34456789999999999875 4554 57999998754
No 110
>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A
Probab=35.56 E-value=66 Score=28.95 Aligned_cols=54 Identities=9% Similarity=0.070 Sum_probs=36.3
Q ss_pred cceEEeCCCCEEEccCCC-cCeEEEEeeeEEEEEEecCC---CcEEEEecCCCCeecc
Q 007897 412 VRPLVYSKDEKIIREGDP-VPRMVFIVRGRIKRCQSLSK---GMVATSVLEPGGFLGD 465 (585)
Q Consensus 412 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~~---g~~~~~~l~~G~~fGe 465 (585)
+....+.||...-..-.. ..++++|++|++++...+.+ ++.....+++||.+=-
T Consensus 74 ~~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~i 131 (201)
T 1fi2_A 74 MNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVI 131 (201)
T ss_dssp EEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEEE
T ss_pred EEEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEEE
Confidence 345577888765443333 57999999999998764332 3422577999998743
No 111
>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20
Probab=35.26 E-value=74 Score=28.12 Aligned_cols=85 Identities=12% Similarity=0.131 Sum_probs=51.5
Q ss_pred HHHHHHHhhcce----EEeCCCCEEEc-cCC----------CcCeEEEEeeeEEEEEEecCCC----cEEEEecCCCCee
Q 007897 403 LILDNICDRVRP----LVYSKDEKIIR-EGD----------PVPRMVFIVRGRIKRCQSLSKG----MVATSVLEPGGFL 463 (585)
Q Consensus 403 ~~l~~l~~~l~~----~~~~~ge~I~~-~Gd----------~~~~lyfI~~G~v~v~~~~~~g----~~~~~~l~~G~~f 463 (585)
+-+.+....++| .....+++++. .|. +.++++++++|.+.+-..+ +| +..-..+++||.|
T Consensus 12 ~wl~e~~~~~~PPV~Nk~v~~~~~~V~~vgGPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d-~g~~~~~~~dv~i~eGdmf 90 (176)
T 1zvf_A 12 KWLKENEGLLKPPVNNYCLHKGGFTVMIVGGPNERTDYHINPTPEWFYQKKGSMLLKVVD-ETDAEPKFIDIIINEGDSY 90 (176)
T ss_dssp HHHHHHGGGGSSSSCEEEEECSSEEEEEECSSBCCSCEEECSSCEEEEEEESCEEEEEEE-CSSSSCEEEEEEECTTEEE
T ss_pred HHHHHhHhhcCCCcCCEEEecCCEEEEEEcCCCcCCcCcCCCCceEEEEEeCEEEEEEEc-CCCcccceeeEEECCCCEE
Confidence 345566667777 54444665533 222 3469999999999987754 34 2235789999998
Q ss_pred cccchhhcccCCccCCCCcceeEEEEecceEEEEecHHH
Q 007897 464 GDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAKN 502 (585)
Q Consensus 464 Ge~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~~ 502 (585)
=-- .+.| .+-++..++..+.+.+..
T Consensus 91 llP-----------~gvp---HsP~r~~e~v~lviErkR 115 (176)
T 1zvf_A 91 LLP-----------GNVP---HSPVRFADTVGIVVEQDR 115 (176)
T ss_dssp EEC-----------TTCC---EEEEECTTCEEEEEEECC
T ss_pred EcC-----------CCCC---cCCcccCCcEEEEEEecC
Confidence 543 2333 233334567666665543
No 112
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=34.65 E-value=1.8e+02 Score=23.33 Aligned_cols=81 Identities=7% Similarity=-0.018 Sum_probs=47.4
Q ss_pred eEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhcccCCccCCCCcceeEEEEecce
Q 007897 414 PLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESI 493 (585)
Q Consensus 414 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t~~ 493 (585)
...+.||...-..--...++++|++|.+.+.. +|+. ..+++||.+=-. .+.+ .......-+++
T Consensus 38 ~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i---~~~~--~~l~~Gd~~~i~-----------~~~~-H~~~~~~~~~~ 100 (128)
T 4i4a_A 38 WCIVRPETKSFRHSHNEYELFIVIQGNAIIRI---NDED--FPVTKGDLIIIP-----------LDSE-HHVINNNQEDF 100 (128)
T ss_dssp EEEECTTEECCCBCCSSEEEEEEEESEEEEEE---TTEE--EEEETTCEEEEC-----------TTCC-EEEEECSSSCE
T ss_pred EEEECCCCccCCEecCCeEEEEEEeCEEEEEE---CCEE--EEECCCcEEEEC-----------CCCc-EEeEeCCCCCE
Confidence 34566776444333456789999999999876 3443 678899876432 1222 22222222333
Q ss_pred E--EEEecHHHHHHHHHHhh
Q 007897 494 E--AFGLDAKNLRYITDHFR 511 (585)
Q Consensus 494 ~--l~~l~~~~f~~ll~~~p 511 (585)
+ ++.++.+-+..+...-+
T Consensus 101 ~~~~i~f~~~~~~~~~~~~~ 120 (128)
T 4i4a_A 101 HFYTIWWDKESTLNFLTRLE 120 (128)
T ss_dssp EEEEEEECHHHHHHHHHHHH
T ss_pred EEEEEEECHHHHHHHHHhcc
Confidence 3 45567776766665543
No 113
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=34.42 E-value=57 Score=28.52 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=31.8
Q ss_pred eEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeec
Q 007897 414 PLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLG 464 (585)
Q Consensus 414 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fG 464 (585)
...+.||..+-..--...++++|++|++++.. +|+ ...+++||.+=
T Consensus 57 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v---~g~--~~~l~~GD~i~ 102 (166)
T 3jzv_A 57 YFEVGPGGHSTLERHQHAHGVMILKGRGHAMV---GRA--VSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEECEEEEE---TTE--EEEECTTCEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE---CCE--EEEeCCCCEEE
Confidence 34556666554444456789999999999875 344 36789999764
No 114
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=34.39 E-value=54 Score=28.83 Aligned_cols=33 Identities=6% Similarity=-0.105 Sum_probs=25.7
Q ss_pred CCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 428 DPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 428 d~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
..+++++||++|.+++.. +|+. ..+++||+|=-
T Consensus 108 h~gEE~~yVLeG~v~vtl---~g~~--~~L~~Gds~~i 140 (166)
T 2vpv_A 108 FRTYITFHVIQGIVEVTV---CKNK--FLSVKGSTFQI 140 (166)
T ss_dssp CSEEEEEEEEESEEEEEE---TTEE--EEEETTCEEEE
T ss_pred CCceEEEEEEEeEEEEEE---CCEE--EEEcCCCEEEE
Confidence 355889999999999986 3443 57999998754
No 115
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=34.35 E-value=1.4e+02 Score=27.74 Aligned_cols=45 Identities=11% Similarity=0.157 Sum_probs=33.3
Q ss_pred eEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 414 PLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 414 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
...+.||...-..- .+++.+|++|++++.. +|++ ..+++||++=-
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~---~~~~--~~l~~Gd~~~~ 98 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAV---GGET--RTLREYDYVYL 98 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEEC---SSCE--EEECTTEEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEE---CCEE--EEECCCCEEEE
Confidence 45677887665443 7789999999999875 4544 67999998754
No 116
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=34.27 E-value=67 Score=27.81 Aligned_cols=48 Identities=10% Similarity=0.053 Sum_probs=31.8
Q ss_pred ceEEeCCCCEEE--ccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 413 RPLVYSKDEKII--REGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 413 ~~~~~~~ge~I~--~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
....+.||.... ..-...+++++|++|++.+.. +++ ...+++||.+--
T Consensus 46 ~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~---~~~--~~~l~~GD~i~i 95 (163)
T 3i7d_A 46 NLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD---DQG--EHPMVPGDCAAF 95 (163)
T ss_dssp EEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE---TTE--EEEECTTCEEEE
T ss_pred EEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE---CCE--EEEeCCCCEEEE
Confidence 345667777542 222223699999999999876 343 367999987643
No 117
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=33.16 E-value=43 Score=18.96 Aligned_cols=18 Identities=17% Similarity=0.373 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 007897 531 RTWAAVNIQFAWRRYRMR 548 (585)
Q Consensus 531 ~~~~~~~~~~~~~~~~~r 548 (585)
+.+++.+||+-|++.++|
T Consensus 5 KiYA~llI~d~~r~~k~r 22 (23)
T 3dvk_B 5 KIYAAMMIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 457889999999998866
No 118
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=32.96 E-value=65 Score=27.78 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=30.9
Q ss_pred eEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCee
Q 007897 414 PLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFL 463 (585)
Q Consensus 414 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~f 463 (585)
...+.||..+-..-....++++|++|.+++.. +|+. ..+++||++
T Consensus 48 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v---~g~~--~~l~~Gd~i 92 (156)
T 3kgz_A 48 YFEVDEGGYSTLERHAHVHAVMIHRGHGQCLV---GETI--SDVAQGDLV 92 (156)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEEEEEEEE---TTEE--EEEETTCEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE---CCEE--EEeCCCCEE
Confidence 33456666554444456789999999999875 3443 678888876
No 119
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=32.84 E-value=17 Score=28.69 Aligned_cols=50 Identities=12% Similarity=0.087 Sum_probs=34.7
Q ss_pred cceEEeCCCCEEEccCCCc-CeEEEEeeeEEEEEEecCCCcEEEEecCCCCee
Q 007897 412 VRPLVYSKDEKIIREGDPV-PRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFL 463 (585)
Q Consensus 412 l~~~~~~~ge~I~~~Gd~~-~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~f 463 (585)
.+...++||+.+=.+--.. ...++|.+|.+.+.. .+|......+.+|+.+
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~--~d~~~~~~~l~~G~~~ 69 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVA--PDGTRSLAQLKTGRSY 69 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEEC--TTSCEECCCBCTTCCE
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEeccEEEEEe--CCCceEEEEecCCcEE
Confidence 4556788998886665555 467888899998865 4555545567888765
No 120
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=32.50 E-value=73 Score=26.32 Aligned_cols=47 Identities=9% Similarity=0.017 Sum_probs=32.4
Q ss_pred ceEEeCCCCEEEccCCC-cCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeec
Q 007897 413 RPLVYSKDEKIIREGDP-VPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLG 464 (585)
Q Consensus 413 ~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fG 464 (585)
....+.||..+-..--. ..++++|++|.+.+.. +|+. ..+.+||.+=
T Consensus 60 ~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i---~~~~--~~l~~Gd~i~ 107 (133)
T 1o4t_A 60 ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD---NGKD--VPIKAGDVCF 107 (133)
T ss_dssp EEEEECTTCEEEEEECCSEEEEEEEEESEEEEEE---TTEE--EEEETTEEEE
T ss_pred EEEEECCCCccCceECCCccEEEEEEeCEEEEEE---CCEE--EEeCCCcEEE
Confidence 34567888766433333 3789999999999875 3443 5788998763
No 121
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=31.90 E-value=65 Score=26.27 Aligned_cols=46 Identities=15% Similarity=0.266 Sum_probs=31.0
Q ss_pred eEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeec
Q 007897 414 PLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLG 464 (585)
Q Consensus 414 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fG 464 (585)
...+.||...-..--...++++|++|.+.+.. ++++ ..+.+||.+=
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~~--~~l~~Gd~i~ 97 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK---EQGE--ETVEEGFYIF 97 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEEC---SSCE--EEEETTEEEE
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEE---CCEE--EEECCCCEEE
Confidence 34556666554333446899999999999865 3443 5688888764
No 122
>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*
Probab=31.65 E-value=59 Score=29.04 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=27.6
Q ss_pred CeEEEEeeeEEEEEEecCCCcEEEEecCCCCeec
Q 007897 431 PRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLG 464 (585)
Q Consensus 431 ~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fG 464 (585)
.++++|++|++.+...+..|+.....+++||.+=
T Consensus 97 ~E~~~Vl~G~~~~~i~~~~g~~~~~~l~~GD~v~ 130 (190)
T 1x82_A 97 AEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVY 130 (190)
T ss_dssp CEEEEEEESCEEEEEECTTCCEEEEEECTTCEEE
T ss_pred CEEEEEEcCEEEEEEcCcCCcEEEEEECCCcEEE
Confidence 6999999999999876555665567899999873
No 123
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=31.10 E-value=72 Score=29.34 Aligned_cols=46 Identities=15% Similarity=0.031 Sum_probs=30.0
Q ss_pred EeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 416 VYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 416 ~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
.+.||...=.--.+.+++|+|++|.++... .+|.. ..+++|+.+=-
T Consensus 138 ~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v--~~g~~--~~l~pGd~v~i 183 (217)
T 4b29_A 138 YWGPGLDYGWHEHLPEELYSVVSGRALFHL--RNAPD--LMLEPGQTRFH 183 (217)
T ss_dssp EECSSCEEEEEECSSEEEEEEEEECEEEEE--TTSCC--EEECTTCEEEE
T ss_pred EECCCCcCCCCCCCCceEEEEEeCCEEEEE--CCCCE--EecCCCCEEEc
Confidence 344444433333467899999999999876 33433 57899987643
No 124
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=30.73 E-value=47 Score=27.85 Aligned_cols=45 Identities=7% Similarity=0.077 Sum_probs=31.4
Q ss_pred EEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeeccc
Q 007897 415 LVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDE 466 (585)
Q Consensus 415 ~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~ 466 (585)
..+.||..-.. ...+++++|++|++.+.. +|+. ..+++||.+--.
T Consensus 62 ~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~---~g~~--~~l~~GD~i~~p 106 (133)
T 2pyt_A 62 MQWDNAFFPWT--LNYDEIDMVLEGELHVRH---EGET--MIAKAGDVMFIP 106 (133)
T ss_dssp EEEEEEEEEEE--CSSEEEEEEEEEEEEEEE---TTEE--EEEETTCEEEEC
T ss_pred EEECCCCcccc--CCCCEEEEEEECEEEEEE---CCEE--EEECCCcEEEEC
Confidence 35667743222 236899999999999876 3554 579999988543
No 125
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Probab=30.54 E-value=82 Score=32.98 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=43.7
Q ss_pred HHHHHhhcceEEeCCCCEEEccCCC-cCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeecc
Q 007897 405 LDNICDRVRPLVYSKDEKIIREGDP-VPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLGD 465 (585)
Q Consensus 405 l~~l~~~l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fGe 465 (585)
+..+-..+....+.||..+--.=.+ ++++++|++|.+.+...+.+|... ...+++||+|=-
T Consensus 362 L~~lgls~a~v~l~pG~~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~g~~~~~~~l~~GDv~vv 424 (493)
T 2d5f_A 362 LRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNAQGNAVFDGELRRGQLLVV 424 (493)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEE
T ss_pred ccccceEEEEEEccCCceeeeeECCCCCEEEEEEeceEEEEEEcCCCCEEEeEEEcCCCEEEE
Confidence 3444445666778888866544333 589999999999998776667665 367999998743
No 126
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=30.29 E-value=74 Score=24.33 Aligned_cols=51 Identities=8% Similarity=0.135 Sum_probs=33.7
Q ss_pred CeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhcccCCccCCCCcceeEEEEecceEEEEecH
Q 007897 431 PRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDA 500 (585)
Q Consensus 431 ~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~ 500 (585)
.+++++++|.+.+.. +|+. ..+.+||.+=-. .+.+ ..+.+.+++.++.++.
T Consensus 51 ~e~~~v~~G~~~~~~---~~~~--~~l~~Gd~~~ip-----------~~~~---H~~~~~~~~~~l~i~~ 101 (102)
T 3d82_A 51 DEVFIVMEGTLQIAF---RDQN--ITLQAGEMYVIP-----------KGVE---HKPMAKEECKIMIIEP 101 (102)
T ss_dssp CEEEEEEESEEEEEC---SSCE--EEEETTEEEEEC-----------TTCC---BEEEEEEEEEEEEEEE
T ss_pred cEEEEEEeCEEEEEE---CCEE--EEEcCCCEEEEC-----------CCCe---EeeEcCCCCEEEEEEc
Confidence 799999999999864 3443 568899876332 2222 3344557788877753
No 127
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=30.07 E-value=86 Score=27.66 Aligned_cols=45 Identities=11% Similarity=0.150 Sum_probs=31.6
Q ss_pred EEeCCCCEEEc--cCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeec
Q 007897 415 LVYSKDEKIIR--EGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLG 464 (585)
Q Consensus 415 ~~~~~ge~I~~--~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fG 464 (585)
..+.||...-. ......++++|++|.+.+.. +|+. ..+.+||.+=
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~---~~~~--~~l~~GD~i~ 155 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF---DEQW--HELQQGEHIR 155 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEE---TTEE--EEECTTCEEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE---CCEE--EEeCCCCEEE
Confidence 45677776542 22334799999999999876 3443 5799999774
No 128
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=29.99 E-value=1.2e+02 Score=28.14 Aligned_cols=48 Identities=8% Similarity=-0.041 Sum_probs=35.1
Q ss_pred eEEeCC-CCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeeccc
Q 007897 414 PLVYSK-DEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDE 466 (585)
Q Consensus 414 ~~~~~~-ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~ 466 (585)
...+.| |..+-..--...++++|++|.+.+.. +|+. ..+++||.+--.
T Consensus 149 ~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~~--~~l~~Gd~i~ip 197 (243)
T 3h7j_A 149 LAKIPGNGGEMPFHKHRNEQIGICIGGGYDMTV---EGCT--VEMKFGTAYFCE 197 (243)
T ss_dssp EEEECTTTEEEEEECCSSEEEEEECSSCEEEEE---TTEE--EEECTTCEEEEC
T ss_pred EEEECCCCCcCCCEeCCCcEEEEEEECEEEEEE---CCEE--EEECCCCEEEEC
Confidence 445888 87775555556789999999999876 3443 569999987543
No 129
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A
Probab=29.51 E-value=74 Score=33.14 Aligned_cols=54 Identities=13% Similarity=0.101 Sum_probs=39.8
Q ss_pred hcceEEeCCCCEEEccCCC-cCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeec
Q 007897 411 RVRPLVYSKDEKIIREGDP-VPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLG 464 (585)
Q Consensus 411 ~l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fG 464 (585)
.+....+.||..+-..=.+ ++++++|++|.+.+...+.+|.+. ...+++||++=
T Consensus 339 s~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv~v 394 (476)
T 1fxz_A 339 SAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVLI 394 (476)
T ss_dssp CEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred eEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCEEE
Confidence 3456677888866444334 589999999999998776777654 45799999873
No 130
>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A
Probab=29.45 E-value=97 Score=29.63 Aligned_cols=59 Identities=10% Similarity=0.140 Sum_probs=39.9
Q ss_pred CCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhcccCCccCCCCcceeEEEEecceEEEEecHH
Q 007897 428 DPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESIEAFGLDAK 501 (585)
Q Consensus 428 d~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t~~~l~~l~~~ 501 (585)
+..+++|++++|.+.+-..+ +|+..-..+++|++|=-- .+.| .+=++..+|..+++.+.
T Consensus 49 ~~~dE~FyqlkG~m~l~~~d-~g~~~~V~i~eGemfllP-----------~gv~---HsP~r~~et~gLviE~~ 107 (286)
T 2qnk_A 49 EEGEEVFYQLEGDMVLRVLE-QGKHRDVVIRQGEIFLLP-----------ARVP---HSPQRFANTVGLVVERR 107 (286)
T ss_dssp CSSCEEEEEEESCEEEEEEE-TTEEEEEEECTTEEEEEC-----------TTCC---EEEEECTTCEEEEEEEC
T ss_pred CCCCeEEEEEeCeEEEEEEe-CCceeeEEECCCeEEEeC-----------CCCC---cCCcccCCeEEEEEeec
Confidence 35689999999999987653 464335789999998543 2333 23344667777777743
No 131
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}
Probab=29.08 E-value=76 Score=33.32 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=42.3
Q ss_pred HHHHhhcceEEeCCCCEEEccCCC-cCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCee
Q 007897 406 DNICDRVRPLVYSKDEKIIREGDP-VPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFL 463 (585)
Q Consensus 406 ~~l~~~l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~f 463 (585)
..+-..+....+.||..+--.=.+ ++++++|++|.+.+...+.+|.+. ...+++||++
T Consensus 368 ~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv~ 427 (510)
T 3c3v_A 368 RWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHVL 427 (510)
T ss_dssp HHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred ccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcEE
Confidence 344445566778888866544333 589999999999998776777654 4579999987
No 132
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=28.18 E-value=50 Score=33.52 Aligned_cols=78 Identities=5% Similarity=-0.110 Sum_probs=51.6
Q ss_pred cceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhcccCCccCCCCcceeEEEE--
Q 007897 412 VRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVC-- 489 (585)
Q Consensus 412 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A-- 489 (585)
+....+.||+..-..-....++|+|++|+..+.. +|++ ..+++||+|-.-. +. ......
T Consensus 296 ~~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~V---~ge~--~~~~~GD~~~iP~-----------g~---~H~~~N~g 356 (394)
T 3bu7_A 296 ASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSIV---GGKR--FDWSEHDIFCVPA-----------WT---WHEHCNTQ 356 (394)
T ss_dssp EEEEEECTTCBCCCEEESSCEEEEEEECCEEEEE---TTEE--EEECTTCEEEECT-----------TC---CEEEEECC
T ss_pred EEEEEECCCCcCCCcccCCcEEEEEEeCeEEEEE---CCEE--EEEeCCCEEEECC-----------CC---eEEeEeCC
Confidence 3566788888877666677889999999986654 4554 6799999986541 11 122333
Q ss_pred -ecceEEEEecHHHHHHHHH
Q 007897 490 -MESIEAFGLDAKNLRYITD 508 (585)
Q Consensus 490 -~t~~~l~~l~~~~f~~ll~ 508 (585)
-+++.++.++-.-+.+-+.
T Consensus 357 ~~e~~~ll~i~D~Pl~~~Lg 376 (394)
T 3bu7_A 357 ERDDACLFSFNDFPVMEKLG 376 (394)
T ss_dssp SSCCEEEEEEESHHHHHHTT
T ss_pred CCCCeEEEEeeCHHHHHHhh
Confidence 3467788877555554443
No 133
>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23
Probab=27.70 E-value=38 Score=34.38 Aligned_cols=49 Identities=14% Similarity=0.101 Sum_probs=37.3
Q ss_pred ceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 413 RPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 413 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
....+.||+.+-..--...++|||++|+-..+. .+|++ ..+++||++=-
T Consensus 126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t~--v~G~~--~~~~~GD~i~~ 174 (394)
T 3bu7_A 126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYTI--VDGHK--VELGANDFVLT 174 (394)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEECSCEEEE--ETTEE--EEECTTCEEEE
T ss_pred EEEEECCCCCcCCccCCcceEEEEEEeeEEEEE--ECCEE--EEEcCCCEEEE
Confidence 667889999887766667799999999876533 35655 57899998844
No 134
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=27.68 E-value=2.1e+02 Score=21.95 Aligned_cols=48 Identities=8% Similarity=0.176 Sum_probs=31.3
Q ss_pred eEEeCCCCEEEccCCCc-CeE-EEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 414 PLVYSKDEKIIREGDPV-PRM-VFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 414 ~~~~~~ge~I~~~Gd~~-~~l-yfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
...+.||..+-..-... .++ ++|++|.+.+.. .+|+. ..+.+||.+=-
T Consensus 37 ~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~--~~~~~--~~l~~Gd~~~i 86 (110)
T 2q30_A 37 SFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVG--DGDAV--IPAPRGAVLVA 86 (110)
T ss_dssp EEEECTTCEEEEECCSSSCEEEEEEEESCEEEEC--GGGCE--EEECTTEEEEE
T ss_pred EEEECCCCcCCcccCCCCccEEEEEEeCEEEEEe--CCCEE--EEECCCCEEEe
Confidence 34567887765433332 466 899999999864 21343 57999987643
No 135
>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A
Probab=27.30 E-value=1e+02 Score=32.37 Aligned_cols=60 Identities=10% Similarity=0.119 Sum_probs=44.6
Q ss_pred HHHHHhhcceEEeCCCCEEEccCC-CcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeec
Q 007897 405 LDNICDRVRPLVYSKDEKIIREGD-PVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLG 464 (585)
Q Consensus 405 l~~l~~~l~~~~~~~ge~I~~~Gd-~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fG 464 (585)
+..+-..+....+.||-++--.=. .++++.+|++|.+.+...+.+|... ...+.+||+|=
T Consensus 389 L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV~v 450 (531)
T 3fz3_A 389 LRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQLFI 450 (531)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred cccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeEEE
Confidence 344444566778888887754432 3689999999999998777777664 77899999874
No 136
>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}
Probab=27.11 E-value=59 Score=28.07 Aligned_cols=32 Identities=9% Similarity=0.161 Sum_probs=24.9
Q ss_pred CcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 429 PVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 429 ~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
..+++++|++|++++.. +|+. ..+++||.+=-
T Consensus 83 ~~eE~~yVLeG~~~l~i---~g~~--~~l~~GD~i~i 114 (151)
T 4axo_A 83 NYDEIDYVIDGTLDIII---DGRK--VSASSGELIFI 114 (151)
T ss_dssp SSEEEEEEEEEEEEEEE---TTEE--EEEETTCEEEE
T ss_pred CCcEEEEEEEeEEEEEE---CCEE--EEEcCCCEEEE
Confidence 45789999999999985 4543 67999998743
No 137
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=26.89 E-value=1.9e+02 Score=24.24 Aligned_cols=47 Identities=15% Similarity=0.335 Sum_probs=31.7
Q ss_pred eEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeec
Q 007897 414 PLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLG 464 (585)
Q Consensus 414 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fG 464 (585)
...+.||..+-..--...++++|++|.+.+.. ++++ ...+.+||.+=
T Consensus 52 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~---~~~~-~~~l~~Gd~i~ 98 (147)
T 2f4p_A 52 DVVFEPGARTHWHSHPGGQILIVTRGKGFYQE---RGKP-ARILKKGDVVE 98 (147)
T ss_dssp EEEECTTCEECSEECTTCEEEEEEEEEEEEEE---TTSC-CEEEETTCEEE
T ss_pred EEEECCCCccCceECCCceEEEEEeCEEEEEE---CCEE-EEEECCCCEEE
Confidence 45667777664333345799999999999876 2322 14688888774
No 138
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=26.78 E-value=82 Score=29.99 Aligned_cols=69 Identities=12% Similarity=0.157 Sum_probs=43.8
Q ss_pred eEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhcccCCccCCCCcceeEEEEecce
Q 007897 414 PLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMESI 493 (585)
Q Consensus 414 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t~~ 493 (585)
...+.||..--.....++++.+|++|++.+.. .+|++ ..+++|+++=.. .+. ..+.+..+.+
T Consensus 74 lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l--~~g~~--~~L~~Gds~y~p-----------~~~---~H~~~N~~~A 135 (266)
T 4e2q_A 74 LAKMKEMSSSGLPPQDIERLIFVVEGAVTLTN--TSSSS--KKLTVDSYAYLP-----------PNF---HHSLDCVESA 135 (266)
T ss_dssp EEEECSSEECCCCCTTEEEEEEEEEECEEEEC----CCC--EEECTTEEEEEC-----------TTC---CCEEEESSCE
T ss_pred EEEECcCCcCCCCCCCCeEEEEEEEEEEEEEE--CCCcE--EEEcCCCEEEEC-----------CCC---CEEEEeCCCE
Confidence 45677877642233456899999999999875 21444 579999987443 122 2334445678
Q ss_pred EEEEecH
Q 007897 494 EAFGLDA 500 (585)
Q Consensus 494 ~l~~l~~ 500 (585)
+++.+.+
T Consensus 136 r~l~V~k 142 (266)
T 4e2q_A 136 TLVVFER 142 (266)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 8877744
No 139
>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11
Probab=25.89 E-value=82 Score=29.59 Aligned_cols=47 Identities=15% Similarity=0.284 Sum_probs=31.8
Q ss_pred eEEeCCCCEEEccC--CCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 414 PLVYSKDEKIIREG--DPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 414 ~~~~~~ge~I~~~G--d~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
...+.||...-..- ...+++.+|++|++++.. +|++ ..+++||++--
T Consensus 63 ~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~~---~~~~--~~L~~Gd~~~~ 111 (261)
T 1rc6_A 63 LVTLHQNGGNQQGFGGEGIETFLYVISGNITAKA---EGKT--FALSEGGYLYC 111 (261)
T ss_dssp EEEEEEEEEESSCSCCTTEEEEEEEEESEEEEEE---TTEE--EEEETTEEEEE
T ss_pred EEEEcCCCccCCCCCCCCceEEEEEEEeEEEEEE---CCEE--EEECCCCEEEE
Confidence 34566776543321 234689999999999986 3443 67999998754
No 140
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=25.65 E-value=54 Score=26.20 Aligned_cols=46 Identities=11% Similarity=0.192 Sum_probs=29.4
Q ss_pred EEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeec
Q 007897 415 LVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLG 464 (585)
Q Consensus 415 ~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fG 464 (585)
..+.||...-..-....++++|++|.+.+.. +++. ...+++||.+=
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i---~~~~-~~~l~~Gd~i~ 77 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL---EDQE-PHNYKEGNIVY 77 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEE---TTSC-CEEEETTCEEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEE---CCEE-EEEeCCCCEEE
Confidence 3455666543222345789999999999876 2333 12688988763
No 141
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=24.86 E-value=1.2e+02 Score=25.72 Aligned_cols=46 Identities=11% Similarity=0.164 Sum_probs=31.5
Q ss_pred ceEEeCCCCE-EE-ccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCee
Q 007897 413 RPLVYSKDEK-II-REGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFL 463 (585)
Q Consensus 413 ~~~~~~~ge~-I~-~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~f 463 (585)
....+.||.. .- ..-....++++|++|.+.+.. +|++ ..+++||.+
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~---~~~~--~~l~~Gd~i 96 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM---ENDQ--YPIAPGDFV 96 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE---TTEE--EEECTTCEE
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE---CCEE--EEeCCCCEE
Confidence 3456777773 21 111246899999999999875 3443 679999987
No 142
>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B
Probab=24.78 E-value=58 Score=33.66 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=39.1
Q ss_pred hcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeec
Q 007897 411 RVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLG 464 (585)
Q Consensus 411 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fG 464 (585)
.+....+.||..+-..--.++++++|++|++.+....+++.+ ...+++||.+-
T Consensus 87 s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~-~~~l~~GDv~~ 139 (445)
T 2cav_A 87 RVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRD-TYKLDQGDAIK 139 (445)
T ss_dssp EEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEE-EEEEETTEEEE
T ss_pred EEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCE-EEEecCCCEEE
Confidence 345568889987766644568999999999988765444443 67899999874
No 143
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=24.75 E-value=89 Score=29.01 Aligned_cols=47 Identities=6% Similarity=-0.024 Sum_probs=35.2
Q ss_pred cceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCee
Q 007897 412 VRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFL 463 (585)
Q Consensus 412 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~f 463 (585)
+....+.||..+-..--...++.+|++|.+++.. +|.. ..+.+||.+
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~---~~~~--~~l~~Gd~i 82 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV---GDVT--RKMTALESA 82 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE---TTEE--EEEETTTCE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE---CCEE--EEECCCCEE
Confidence 4445688998876665667899999999999876 3443 678999844
No 144
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=24.71 E-value=86 Score=29.93 Aligned_cols=50 Identities=14% Similarity=0.142 Sum_probs=38.0
Q ss_pred hhcceEEeCCCCEEEc-cCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeec
Q 007897 410 DRVRPLVYSKDEKIIR-EGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLG 464 (585)
Q Consensus 410 ~~l~~~~~~~ge~I~~-~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fG 464 (585)
..+....+.||..|-. +-....+.++|++|+..+.. +|+. ..+++||++-
T Consensus 191 ~~~~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~~---~~~~--~~v~~GD~~~ 241 (278)
T 1sq4_A 191 MHVNIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL---NQDW--VEVEAGDFMW 241 (278)
T ss_dssp EEEEEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE---TTEE--EEEETTCEEE
T ss_pred eEEEEEEECCCCCcCCCCCCCccEEEEEEeCEEEEEE---CCEE--EEeCCCCEEE
Confidence 3466778999999975 44445688999999999875 4554 6799999863
No 145
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=24.63 E-value=1.4e+02 Score=23.96 Aligned_cols=47 Identities=13% Similarity=0.049 Sum_probs=29.6
Q ss_pred ceEEeCCCCEEE--ccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeec
Q 007897 413 RPLVYSKDEKII--REGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLG 464 (585)
Q Consensus 413 ~~~~~~~ge~I~--~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fG 464 (585)
....+.||..+- ..-+..+.+|+|++|.+.+.. +|+. ..+++||.+=
T Consensus 29 ~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i---~~~~--~~l~~Gd~i~ 77 (125)
T 3cew_A 29 SINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI---DGEK--IELQAGDWLR 77 (125)
T ss_dssp EEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE---TTEE--EEEETTEEEE
T ss_pred EEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE---CCEE--EEeCCCCEEE
Confidence 345667776542 222223457779999999875 3443 5788888764
No 146
>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*
Probab=24.40 E-value=71 Score=32.62 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=39.0
Q ss_pred hcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeec
Q 007897 411 RVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLG 464 (585)
Q Consensus 411 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fG 464 (585)
.+....+.||..+-..-...+++++|++|+..+.....+ ......+++||++-
T Consensus 50 s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~-~~~~~~l~~GDv~~ 102 (416)
T 1uij_A 50 RIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNND-DRDSYNLHPGDAQR 102 (416)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSS-CEEEEEECTTEEEE
T ss_pred EEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECC-CCeEEEecCCCEEE
Confidence 355678889987766645568999999999998765443 33357899999873
No 147
>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A
Probab=23.46 E-value=68 Score=32.98 Aligned_cols=53 Identities=11% Similarity=0.112 Sum_probs=39.4
Q ss_pred hcceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeec
Q 007897 411 RVRPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLG 464 (585)
Q Consensus 411 ~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fG 464 (585)
.+....+.||..+-..-..++++++|++|+..+.....++. ....+++||++-
T Consensus 62 s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~-~~~~l~~GDv~~ 114 (434)
T 2ea7_A 62 RVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSR-DSYILEQGHAQK 114 (434)
T ss_dssp EEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCE-EEEEEETTEEEE
T ss_pred EEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCC-EEEEeCCCCEEE
Confidence 35567888998887774456899999999999876544333 367788998763
No 148
>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*
Probab=23.38 E-value=72 Score=27.39 Aligned_cols=52 Identities=8% Similarity=-0.000 Sum_probs=32.6
Q ss_pred ceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCC----CcEEEEecCCCCeec
Q 007897 413 RPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSK----GMVATSVLEPGGFLG 464 (585)
Q Consensus 413 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~----g~~~~~~l~~G~~fG 464 (585)
....+.||..+-..-....++++|++|.+.+...+.+ ++.....+++||.+=
T Consensus 44 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~~~~~~~~~~~~l~~Gd~i~ 99 (163)
T 1lr5_A 44 WLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFS 99 (163)
T ss_dssp EEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEE
T ss_pred EEEEECCCCcCCCeECCCCeEEEEEeCEEEEEECCccccccCccEEEEeCCCCEEE
Confidence 3445677765422222457899999999998864211 111246799998764
No 149
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=23.17 E-value=42 Score=18.97 Aligned_cols=19 Identities=16% Similarity=0.254 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHhhc
Q 007897 531 RTWAAVNIQFAWRRYRMRT 549 (585)
Q Consensus 531 ~~~~~~~~~~~~~~~~~r~ 549 (585)
+.+++.+|++-|++.++|+
T Consensus 4 KiYAallI~d~~r~~k~~~ 22 (23)
T 3dve_B 4 KVYAALMIFDFYKQNKTSR 22 (26)
T ss_dssp HHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 4578999999999887553
No 150
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A
Probab=22.22 E-value=1.8e+02 Score=29.07 Aligned_cols=79 Identities=8% Similarity=0.037 Sum_probs=57.3
Q ss_pred ceEEeCCCCEEEccCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecccchhhcccCCccCCCCcceeEEEEecc
Q 007897 413 RPLVYSKDEKIIREGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDELLSWCLRRPFIDRLPASSATFVCMES 492 (585)
Q Consensus 413 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~~ll~~l~~~~~~~~p~~~~tv~A~t~ 492 (585)
....+.||+..-..-..+..+|.|.+|.-.+.. +|+. ...++||.|---+- ...+..+.++
T Consensus 282 ~~~~L~pG~~t~~hRht~s~Vy~V~eG~G~~~I---~~~~--~~w~~gD~fvvP~w--------------~~h~~~n~~~ 342 (368)
T 3nw4_A 282 EFHRLRAGTETATRNEVGSTVFQVFEGAGAVVM---NGET--TKLEKGDMFVVPSW--------------VPWSLQAETQ 342 (368)
T ss_dssp EEEEECTTCBCCCEEESSCEEEEEEESCEEEEE---TTEE--EEECTTCEEEECTT--------------CCEEEEESSS
T ss_pred heEEECCCCccCCeeccccEEEEEEeCcEEEEE---CCEE--EEecCCCEEEECCC--------------CcEEEEeCCC
Confidence 456778888776666677899999999988765 3443 67999999865421 3456677789
Q ss_pred eEEEEecHHHHHHHHHHh
Q 007897 493 IEAFGLDAKNLRYITDHF 510 (585)
Q Consensus 493 ~~l~~l~~~~f~~ll~~~ 510 (585)
+.++.++-.-+.+-+.-|
T Consensus 343 a~Lf~~~D~Pl~~~LGl~ 360 (368)
T 3nw4_A 343 FDLFRFSDAPIMEALSFM 360 (368)
T ss_dssp EEEEEEESHHHHHHTTCC
T ss_pred EEEEEEeCHHHHHHhCCc
Confidence 999999887776655433
No 151
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=22.08 E-value=30 Score=23.12 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=14.5
Q ss_pred hhHHHhhCchHHHHHHHH
Q 007897 367 EMELIKDLPEGLRRGIKR 384 (585)
Q Consensus 367 ~~~il~~Lp~~Lr~~i~~ 384 (585)
..++++.||.++|.|+..
T Consensus 17 D~eVF~~LP~dIQ~Ells 34 (48)
T 2kwv_A 17 DQEVFKQLPADIQEEILS 34 (48)
T ss_dssp CGGGTTTSCHHHHHHHTT
T ss_pred CHHHHHHCcHHHHHHHHh
Confidence 357899999999988863
No 152
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A
Probab=21.72 E-value=1.5e+02 Score=30.60 Aligned_cols=60 Identities=12% Similarity=0.070 Sum_probs=43.4
Q ss_pred HHHHHhhcceEEeCCCCEEEccCC-CcCeEEEEeeeEEEEEEecCCCcEE-EEecCCCCeec
Q 007897 405 LDNICDRVRPLVYSKDEKIIREGD-PVPRMVFIVRGRIKRCQSLSKGMVA-TSVLEPGGFLG 464 (585)
Q Consensus 405 l~~l~~~l~~~~~~~ge~I~~~Gd-~~~~lyfI~~G~v~v~~~~~~g~~~-~~~l~~G~~fG 464 (585)
+..+-..+....+.||.+..-.=. .+.++++|++|.+.+...+.+|... -..+.+||.|=
T Consensus 317 L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv~v 378 (459)
T 2e9q_A 317 LRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQVLM 378 (459)
T ss_dssp HHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred ccccccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcEEE
Confidence 344444566677788876654332 3589999999999998877777765 35799999884
No 153
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=21.38 E-value=70 Score=18.54 Aligned_cols=20 Identities=15% Similarity=0.301 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHhhccC
Q 007897 532 TWAAVNIQFAWRRYRMRTRG 551 (585)
Q Consensus 532 ~~~~~~~~~~~~~~~~r~~~ 551 (585)
.+++.+|++-|+..+.|+..
T Consensus 2 vYAa~mI~e~yrq~K~~r~q 21 (26)
T 3bxl_B 2 IYAAMMIMDYYKQSKVKKQR 21 (26)
T ss_pred hhHHHHHHHHHHHHHhhhhh
Confidence 46899999999999877653
No 154
>1lj2_A NSP3-C, nonstructural RNA-binding protein 34, NS34, NCVP4; NSP3, homodimer, translation, mRNA, closed loop, coiled coil; 2.38A {Simian rotavirus A} SCOP: h.1.13.2
Probab=21.28 E-value=3.1e+02 Score=21.73 Aligned_cols=63 Identities=16% Similarity=0.377 Sum_probs=36.2
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHH----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCCCChhHHHhhCch
Q 007897 310 IGNIQVFLHAV----MAKKRKMQLRC----RDMEWWMRRRQLPSRLRQRVRHYERQRWATMGGEDEMELIKDLPE 376 (585)
Q Consensus 310 ig~i~~il~~~----~~~~~~~~~~~----~~v~~~m~~~~lp~~L~~rv~~y~~~~w~~~~~~~~~~il~~Lp~ 376 (585)
|++-++.+.++ ++...+++.|+ ..+++|++...+|++.+.-+..- -.....++...-+.++-.
T Consensus 8 IaqQQ~~In~lq~~~~klE~dlq~ki~slisSiEw~l~Smel~de~K~DieQq----Lnsid~Inp~~aiddiE~ 78 (110)
T 1lj2_A 8 IPQQQAHIAELQVYNNKLERDLQNKIGSLTSSIEWYLRSMELDPEIKADIEQQ----INSIDAINPLHAFDDLES 78 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHH----HTTSCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHH----hccccccCcchhHhHHHH
Confidence 44444444443 34455666664 47889999999999988764332 233344554444444333
No 155
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=21.11 E-value=1.1e+02 Score=28.92 Aligned_cols=49 Identities=10% Similarity=0.074 Sum_probs=35.0
Q ss_pred cceEEeCCCCEEEc-cCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 412 VRPLVYSKDEKIIR-EGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 412 l~~~~~~~ge~I~~-~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
+....+.||..+-. .--...++++|++|++.+.. +|++ ..+++||.+=-
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i---~~~~--~~l~~GD~i~i 233 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL---DNEW--YPVEKGDYIFM 233 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE---TTEE--EEEETTCEEEE
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEEE---CCEE--EEECCCCEEEE
Confidence 44557788887644 33456899999999999876 3443 67899998743
No 156
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=21.01 E-value=1e+02 Score=24.60 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=24.8
Q ss_pred CCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 428 DPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 428 d~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
...+++++|++|.+++... ++.+ ...+++||.+--
T Consensus 51 ~~~~E~~~Vl~G~~~l~~~--~~~~-~~~l~~Gd~i~i 85 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIECE--GDTA-PRVMRPGDWLHV 85 (112)
T ss_dssp CSSEEEEEEEESCEEEEET--TCSS-CEEECTTEEEEE
T ss_pred CCccEEEEEEeCeEEEEEC--CEEE-EEEECCCCEEEE
Confidence 3567999999999998762 2220 146999998754
No 157
>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11
Probab=20.96 E-value=1e+02 Score=29.38 Aligned_cols=47 Identities=17% Similarity=0.341 Sum_probs=32.0
Q ss_pred eEEeCCCCEEEc--cCCCcCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeecc
Q 007897 414 PLVYSKDEKIIR--EGDPVPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGD 465 (585)
Q Consensus 414 ~~~~~~ge~I~~--~Gd~~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe 465 (585)
...+.||...-. .....+++++|++|++++.. +|++ ..+++||++=-
T Consensus 72 ~~~l~PG~~~~~~~h~H~~eE~~~Vl~G~l~v~v---~g~~--~~L~~GD~i~i 120 (278)
T 1sq4_A 72 IVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTL---QGQV--HAMQPGGYAFI 120 (278)
T ss_dssp EEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEE---SSCE--EEECTTEEEEE
T ss_pred EEEECCCCccCCCCcCCCceEEEEEEeCEEEEEE---CCEE--EEECCCCEEEE
Confidence 445667766521 22345789999999999876 3443 57999998643
No 158
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=20.26 E-value=1.1e+02 Score=28.59 Aligned_cols=33 Identities=12% Similarity=0.235 Sum_probs=26.2
Q ss_pred cCeEEEEeeeEEEEEEecCCCcEEEEecCCCCeeccc
Q 007897 430 VPRMVFIVRGRIKRCQSLSKGMVATSVLEPGGFLGDE 466 (585)
Q Consensus 430 ~~~lyfI~~G~v~v~~~~~~g~~~~~~l~~G~~fGe~ 466 (585)
.+++..|++|.+.+.. ++|.. ..+++||.|---
T Consensus 186 ~~E~~~ILeG~v~lt~--~~G~~--~~~~aGD~~~~P 218 (238)
T 3myx_A 186 IHELMNLIEGRVVLSL--ENGSS--LTVNTGDTVFVA 218 (238)
T ss_dssp SCEEEEEEECCEEEEE--TTSCE--EEECTTCEEEEC
T ss_pred CCEEEEEEEeEEEEEe--CCCCE--EEECCCCEEEEC
Confidence 4689999999999976 56764 679999988543
Done!