Citrus Sinensis ID: 007898

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-----
Protein Sequence
MMKGLIFHQQQQQQQQVLEENMSNLTSQSGTEASVSSGNIRGAETTNHQQYFATPPTQAQPPAKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSSSSHHQPGIVAGASSHVNLQIPQFNPQDFSAFSLKKEQQSYSLRQEMPPWLGSQQPSILGSAVPGLGQPPSSSHTVDHLSSPSSSIFNTRLHQDHQFTQTTHQDLTRNDHPANPNPSLGPTLSVPHTNYHQAMASAFPHMSATALLQKAAQMGATMSSSKASTATGNSSSSSSPAHHAALTRPHQQPPPPQQAHVSATPEHPAGNNKTKTTTGFGLNLSSREGVVHGLTPFGTKTSGGGSSGPFIQEMLMNTSFSSGYAAASPFDDALTFGGVFNSKKEPHLNHSFNESSSLSRTSGINDHGEEMTRDFLGLRALSQTDILNIAGLGNCIDTRSSHEQQLNHSQKPWQG
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccHHHHHccccccccccccHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcHHHHHHcccEEEHHHcccccHcHHcHHHccccccccHHcccccccccEEEEEccccccccccHHHHHccHHHHHHHHHcccccccEEcccccccEEEHccHHHHHccccccEEEcccccEEccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccHHHccccccccHHHHHHHccccccccccHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mmkglifhQQQQQQQQVLEENMsnltsqsgteasvssgnirgaettnhqqyfatpptqaqppakkkrnlpgnpdpdaevialspktlmATNRFVCEICNkgfqrdqnlqlhrrghnlpwklkqRTSKEIRkkvyvcpepncvhhdpsralgdltgikkhfcrkhgekkwkcdkcskryavqsdwkahsktcgtreyrcdcgtlfsrrdsfITHRAFCDALAEEStraitgtnpilsssshhqpgivagasshvnlqipqfnpqdfsafslkKEQQSYSlrqemppwlgsqqpsilgsavpglgqppssshtvdhlsspsssifntrlhqdhqftqtthqdltrndhpanpnpslgptlsvphtnyhqAMASAFPHMSATALLQKAAQMGatmssskastatgnsssssspahhaaltrphqqppppqqahvsatpehpagnnktktttgfglnlssregvvhgltpfgtktsgggssgpFIQEMLMntsfssgyaaaspfddaltfggvfnskkephlnhsfnessslsrtsgindhgeemTRDFLGLRALSQTDIlniaglgncidtrssheqqlnhsqkpwqg
Flexible Loop (DISEMBL)
MMKGLIFHQQQQQQQQVLEENMSNLTSQSGTEASVSSGNIRGAETTNHQQYFATPPTQAQPPAKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFqrdqnlqlhrrghnlpwklkqrtskEIRKKVYvcpepncvhhdpsralgdlTGIKKHFCRkhgekkwkcdkcskryavqsdwkahsktcgtreyrcDCGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSSSSHHQPGIVAGASSHVNLQIPQFNPQDFSAFSLKKEQQSYSLRQEMPPWLGSQQPSILGSAVPGLGQPPSSSHTVDHLSSPSSSIFNTRLHQDHQFTQTTHQDLTRNDHPANPNPSLGPTLSVPHTNYHQAMASAFPHMSATALLQKAAQMGATMSSSKASTATGNSSSSSSPAHHAALTRPHQQPPPPQQAHVSATPEHPAGNNKTKTTTGFGLNLSSREGVVHGLTPFGTKTSGGGSSGPFIQEMLMNTSFSSGYAAASPFDDALTFGGVFNSKKEPhlnhsfnessslsrTSGINDHGEEMTRDFLGLRALSQTDILNIAGLGNCIDTRssheqqlnhsqkpwqg
Low Complexity Region (SEG)
MMKGLIFHqqqqqqqqVLEENMSNLTSQSGTEASVSSGNIRGAETTNHQQYFatpptqaqppakkkRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSSSSHHQPGIVAGASSHVNLQIPQFNPQDFSAFSLKKEQQSYSLRQEMPPWLGSQQPSILGSAVPGLGQPPSSSHTVDHLSSPSSSIFNTRlhqdhqftqtthqdltRNDHPANPNPSLGPTLSVPHTNYHQAMASAFPHMSATALLQKAAQMGatmssskastatgnsssssspahhaaLTRPHqqppppqqAHVSATPEHPAgnnktktttgFGLNLSSREGVVHGLTPFGTKTsgggssgPFIQEMLMNTSFSSGYAAASPFDDALTFGGVFNSKKEPHLNHSFNESSSLSRTSGINDHGEEMTRDFLGLRALSQTDILNIAGLGNCIDTRSSHEQQLNHSQKPWQG
Disordered region (IsUnstruct)
*******************************************************************************IALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESTRAI***************************************************************************************************************************************************************************************************************************************VVHGL********************L****F*SGYAAASPFDDALTFGGVF*********************************DFLGLRALSQTDILNIAGLGNCID******************
Disordered Region (DISOPRED)
****LIF************************************************************************IALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLP**************VYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESTRAITGTNPIL***************************************************************************************************************************************************QKAA************************************************************************************************************************************************************RDFLGLRALSQTDILNIAGLGN*********************
Disordered Region (DISEMBL)
*****************LEENMSN**************NIRGAETTNHQQYFATPP*************PGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSSSSHHQPGIVAGASSHVNLQIPQFNPQDFSAFSLKKEQQSYSLRQEMPPWLGSQQPSILGSAVPG*****************SSSIFNTRLHQDHQFTQTTHQDLTRNDHPANPNPSLGPTLSVPHTNYHQAMASAFPHMSATALLQK*******************************************************GNNKTKTTTGFGLNLSSREGVVHGLTPFGTKTSGGGSSGPFIQEMLMNTSFSSGYAAASPFDDALTFGGVFNSKKEPHLNH***********SGINDHGEEMTRDFLGLRALSQTDILNIAGLGNCIDTR****************
Disordered Region (DISPRO)
*****IF****QQQQQ*****************************************************PGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESTR****************************************************************************************************************************************************************Q**********************************************************TTTGF*LNLSSREGVVHGLTPFGTKTSGGGSSGPFIQEMLMNTSFSSGYAAASPFDDALTFGGVFN****************************EMTRDFLGLRALSQTDILNIAGLGNCIDT*****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMKGLIFxxxxxxxxxxxxxxxxxxxxxSGTEASVSSGNIRGAETTNHQQYFATPPTQAQPPAKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSSSSHHQPGIVAGASSHVNLQIPQFNPQDFSAFSLKKEQQSYSLRQEMPPWLGSQQPSILGSAVPGLGQPPSSSHTVDHLSSPSSSIFNTRLHQDHQFTQTTHQDLTRNDHPANPNPSLGPTLSVPHTNYHQAMASAFPHMSATALLQKAAQMGATMSSSKASTATGNSSSSSSPAHHAALTRPHQQPPPPQQAHVSATPEHPAGNNKTKTTTGFGLNLSSREGVVHGLTPFGTKTSGGGSSGPFIQEMLMNTSFSSGYAAASPFDDALTFGGVFNSKKEPHLNHSFNESSSLSRTSGINDHGEEMTRDFLGLRALSQTDILNIAGLGNCIDTRSSHEQQLNHSQKPWQG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	585	2.2.26 [Sep-21-2011]
Q9ZWA6	506	Zinc finger protein MAGPI	no	no	0.316	0.365	0.809	1e-94
Q9FFH3	466	Zinc finger protein NUTCR	no	no	0.526	0.660	0.527	2e-94
Q700D2	503	Zinc finger protein JACKD	no	no	0.302	0.351	0.8	2e-88
Q9C8N5	499	Protein SENSITIVE TO PROT	no	no	0.311	0.364	0.307	1e-20
Q943I6	522	Zinc finger protein STOP1	no	no	0.326	0.365	0.281	6e-20
Q2QX40	465	Zinc finger protein STAR3	no	no	0.235	0.296	0.333	1e-18
Q8VWG3	303	Protein TRANSPARENT TESTA	no	no	0.237	0.458	0.335	2e-14
O43313	823	ATM interactor OS=Homo sa	yes	no	0.242	0.172	0.320	4e-12
Q6P9S1	818	ATM interactor OS=Mus mus	yes	no	0.198	0.141	0.315	7e-11
Q6PGE4	1016	Zinc finger protein 316 O	no	no	0.174	0.100	0.306	6e-07

>sp|Q9ZWA6|MGP_ARATH Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1

 Score =  348 bits (892), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 157/194 (80%), Positives = 173/194 (89%), Gaps = 9/194 (4%)

Query: 61  PPAKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWK 120
           P  KKKRNLPGNPDP+AEVIALSPKTLMATNRF+CEIC KGFQRDQNLQLHRRGHNLPWK
Sbjct: 38  PLVKKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWK 97

Query: 121 LKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAV 180
           LKQRTSKE+RK+VYVCPE +CVHH P+RALGDLTGIKKHFCRKHGEKKWKC+KC+KRYAV
Sbjct: 98  LKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAV 157

Query: 181 QSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSSSSH 240
           QSDWKAHSKTCGTREYRCDCGT+FSRRDSFITHRAFCDALAEE+ R        L+++SH
Sbjct: 158 QSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETAR--------LNAASH 209

Query: 241 HQPGIVAGASSHVN 254
            +    A A S++N
Sbjct: 210 LKS-FAATAGSNLN 222

Probable transcription factor that regulates tissue boundaries and asymmetric cell division. Might be involved in the sequestration of 'SHORT-ROOT' to the nucleus.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFH3|NUC_ARATH Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1

 Score =  347 bits (889), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 192/364 (52%), Positives = 221/364 (60%), Gaps = 56/364 (15%)

Query: 45  TTNHQQYFATPPTQAQPPAKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQR 104
           T +H +    PP       KKKRNLPGNPDP+AEVIALSP TLMATNRF+CE+C KGFQR
Sbjct: 23  TLDHDESLINPPL-----VKKKRNLPGNPDPEAEVIALSPTTLMATNRFLCEVCGKGFQR 77

Query: 105 DQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKH 164
           DQNLQLHRRGHNLPWKLKQRTSKE+RK+VYVCPE  CVHH  SRALGDLTGIKKHFCRKH
Sbjct: 78  DQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHSSRALGDLTGIKKHFCRKH 137

Query: 165 GEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEES 224
           GEKKW C+KC+KRYAVQSDWKAHSKTCGTREYRCDCGT+FSRRDSFITHRAFCDALAEE+
Sbjct: 138 GEKKWTCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEET 197

Query: 225 TRAITGTNPILSSSSHHQPGIVAGASSHVNLQ--------IPQFNPQDFSAFSLKKEQQS 276
            +        +++ SH      AGA   VNL         IP   P     F  + +   
Sbjct: 198 AK--------INAVSHLNGLAAAGAPGSVNLNYQYLMGTFIPPLQP-----FVPQPQTNP 244

Query: 277 YSLRQEMPPWLGSQQPSILGSAVPGLGQPPSSSHTVDHLSSPSSSIFNTRLHQDHQFTQT 336
               Q   P   S     +G  +      P       +  + S+ I N   H D Q TQ 
Sbjct: 245 NHHHQHFQPPTSSSLSLWMGQDIAPPQPQPDYDWVFGNAKAASACIDNNNTH-DEQITQN 303

Query: 337 THQ-----------DLTRNDHPANPNPSLGPTLSVPHTNYHQAMASAFPHMSATALLQKA 385
            +             L  +D P N N                  A++  +MSATALLQKA
Sbjct: 304 ANASLTTTTTLSAPSLFSSDQPQNAN------------------ANSNVNMSATALLQKA 345

Query: 386 AQMG 389
           A++G
Sbjct: 346 AEIG 349

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D2|JKD_ARATH Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1

 Score =  327 bits (837), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 144/180 (80%), Positives = 163/180 (90%), Gaps = 3/180 (1%)

Query: 63  AKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLK 122
           AKKKRN PG PDPDA+VIALSP TLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLK
Sbjct: 52  AKKKRNQPGTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLK 111

Query: 123 QRTSKE-IRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQ 181
           QR+ +E I+KKVY+CP   CVHHD SRALGDLTGIKKH+ RKHGEKKWKC+KCSK+YAVQ
Sbjct: 112 QRSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQ 171

Query: 182 SDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESTR--AITGTNPILSSSS 239
           SDWKAH+KTCGTREY+CDCGTLFSR+DSFITHRAFCDAL EE  R  +++  NP++S+++
Sbjct: 172 SDWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEEGARMSSLSNNNPVISTTN 231

Probable transcription factor that regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action. Required for radial patterning and stem cell maintenance. Counteracted by 'MAGPIE' (MGP).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8N5|STOP1_ARATH Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1

 Score =  101 bits (252), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 98/205 (47%), Gaps = 23/205 (11%)

Query: 78  EVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKV---- 133
           E++ L  + ++A +   C IC KGF+RD NL++H RGH   +K     +K  ++ V    
Sbjct: 229 EILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPGSE 288

Query: 134 ------YVCPEPNC---VHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC-SKRYAVQSD 183
                 Y CP   C     H   + L  +  +K H+ R H +K + C +C +K+++V +D
Sbjct: 289 PMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKFSVIAD 348

Query: 184 WKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDA------LAEESTRAITGTNPILSS 237
            K H K CG  ++ C CGT FSR+D    H A          L E    A T T    S 
Sbjct: 349 LKTHEKHCGKNKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEETKPSASTSTQRGSSE 408

Query: 238 SSHHQPGIVA---GASSHVNLQIPQ 259
             ++  G+V    G++S+ N +  Q
Sbjct: 409 GGNNNQGMVGFNLGSASNANQETTQ 433

Probable transcription factor. Plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q943I6|STOP1_ORYSJ Zinc finger protein STOP1 homolog OS=Oryza sativa subsp. japonica GN=Os01g0871200 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 103/217 (47%), Gaps = 26/217 (11%)

Query: 79  VIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKV----- 133
           V+ L  + ++A +   C IC KGF+RD NL++H RGH   +K     +K  +        
Sbjct: 268 VLQLEKEEILAPHTHFCLICGKGFKRDANLRMHMRGHGDEYKTAAALAKPSKDSSLESAP 327

Query: 134 ---YVCPEPNCV---HHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC-SKRYAVQSDWKA 186
              Y CP   C     H   + L  +  +K H+ R H +K + C +C +K+++V +D K 
Sbjct: 328 VTRYSCPYVGCKRNKEHKKFQPLKTILCVKNHYKRSHCDKSYTCSRCNTKKFSVIADLKT 387

Query: 187 HSKTCGTREYRCDCGTLFSRRDSFITHRAF---------CDAL----AEESTRAITGTNP 233
           H K CG  ++ C CGT FSR+D    H A           D +    A E  +     N 
Sbjct: 388 HEKHCGRDKWLCSCGTTFSRKDKLFGHVALFQGHTPALPMDDIKVTGASEQPQGSEAMNT 447

Query: 234 ILSSSSHHQPGIVAGASSHVNLQIPQFNPQDFSAFSL 270
           ++ S+ ++ PG  +    ++++++   +P+ FS  S 
Sbjct: 448 MVGSAGYNFPGSSSDDIPNLDMKMAD-DPRYFSPLSF 483

Probable transcription factor that may be involved in aluminum tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QX40|ART1_ORYSJ Zinc finger protein STAR3 OS=Oryza sativa subsp. japonica GN=STAR3 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 74/153 (48%), Gaps = 15/153 (9%)

Query: 79  VIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWK-----------LKQRTSK 127
           V+ L    ++A +   C IC KGF+RD NL++H RGH   +K            +     
Sbjct: 215 VLQLEEDEILAPHTHFCGICGKGFKRDANLRMHMRGHGDEYKSAAALAKPPPPPEGEEQP 274

Query: 128 EIRKKVYVCPEPNCVH---HDPSRALGDLTGIKKHFCRKHGEKKWKCDKC-SKRYAVQSD 183
              ++ Y CP   C     H   + L  +  +K H+ R H EK+  C +C +KR++V +D
Sbjct: 275 PQPERRYSCPHAGCKRNRMHASFQPLKTILCVKNHYKRSHCEKRHVCGRCGAKRFSVMAD 334

Query: 184 WKAHSKTCGTREYRCDCGTLFSRRDSFITHRAF 216
            K H K CG   + C CGT FSR+D    H A 
Sbjct: 335 LKTHEKHCGRDRWLCSCGTSFSRKDKLFAHVAL 367

Transcriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VWG3|TT1_ARATH Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/149 (33%), Positives = 71/149 (47%), Gaps = 10/149 (6%)

Query: 77  AEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKK---- 132
           A  I    + L+    F C +C K F R  NLQ+H  GH   ++    + K  + +    
Sbjct: 129 AYWIPAPEQILIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAMLG 188

Query: 133 --VYVCPE--PNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHS 188
              Y C E   N + H  S+ L D   ++ H+ RKHG K + C  C K  AV+ DW+ H 
Sbjct: 189 IPCYCCVEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCGKLLAVKGDWRTHE 248

Query: 189 KTCGTREYRCDCGTLFSRRDSFITH-RAF 216
           K CG R + C CG+ F  + S   H +AF
Sbjct: 249 KNCGKR-WVCVCGSDFKHKRSLKDHVKAF 276

May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat.

Arabidopsis thaliana (taxid: 3702)

>sp|O43313|ATMIN_HUMAN ATM interactor OS=Homo sapiens GN=ATMIN PE=1 SV=2

 Score = 73.6 bits (179), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 70/153 (45%), Gaps = 11/153 (7%)

Query: 70  PGNPDPDA-EVIALSPKTLMATNR--FVCEI--CNKGFQRDQNLQLHR-RGHNLPWKLKQ 123
           P  P P A E+I  S   L    R   +C +  C K       L +H  + H L   +  
Sbjct: 58  PAVPAPPAGELIQPSVSELSRAVRTNILCTVRGCGKILPNSPALNMHLVKSHRLQDGIVN 117

Query: 124 RTSKEIRK---KVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAV 180
            T ++  K   K Y CP   C    P R     + +K+HF + H EKK KC KCS  Y  
Sbjct: 118 PTIRKDLKTGPKFYCCPIEGC-PRGPERPFSQFSLVKQHFMKMHAEKKHKCSKCSNSYGT 176

Query: 181 QSDWKAHSKTCGTREYRCDCGTLFSRRDSFITH 213
           + D K H++ CG + +RC CG  ++ R +  +H
Sbjct: 177 EWDLKRHAEDCG-KTFRCTCGCPYASRTALQSH 208

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Homo sapiens (taxid: 9606)

>sp|Q6P9S1|ATMIN_MOUSE ATM interactor OS=Mus musculus GN=Atmin PE=2 SV=2

 Score = 69.3 bits (168), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 14/130 (10%)

Query: 93  FVCEI--CNKGFQRDQNLQLHR-RGHNLPWKLKQRTSKEIRK------KVYVCPEPNCVH 143
            +C +  C K       L +H  + H L   +   T   IRK      K Y CP   C  
Sbjct: 80  ILCTVRGCGKILPNSPALNMHLVKSHRLQDGIVNPT---IRKDLTTAPKFYCCPIKGC-P 135

Query: 144 HDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTL 203
             P R     + +K+HF + H EKK KC KCS  Y  + D K H + CG + ++C CG  
Sbjct: 136 RGPDRPFSQFSLVKQHFMKMHAEKKHKCSKCSNSYGTEWDLKRHEEDCG-KTFQCTCGCP 194

Query: 204 FSRRDSFITH 213
           ++ R +  +H
Sbjct: 195 YASRTALQSH 204

Plays a crucial role in cell survival and RAD51 foci formation in response to methylating DNA damage. Involved in regulating the activity of ATM in the absence of DNA damage. May play a role in stabilizing ATM.

Mus musculus (taxid: 10090)

>sp|Q6PGE4|ZF316_MOUSE Zinc finger protein 316 OS=Mus musculus GN=Znf316 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 22/124 (17%)

Query: 93  FVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGD 152
           FVC +C  GF R  +L  H R H               ++ Y C E  C      R  G 
Sbjct: 791 FVCGVCGAGFSRRAHLTAHGRAHT-------------GERPYACAE--C-----GRRFGQ 830

Query: 153 LTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRC-DCGTLFSRRDSF 210
              + +H      EK  +C  C K +   SD+K H +T  G + +RC DCG  F++R + 
Sbjct: 831 SAALTRHQWAHAEEKPHRCPDCGKGFGHSSDFKRHRRTHTGEKPFRCADCGRGFAQRSNL 890

Query: 211 ITHR 214
             HR
Sbjct: 891 AKHR 894

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	585
147854387	532	hypothetical protein VITISV_006257 [Viti	0.841	0.924	0.582	1e-155
255572931	552	nucleic acid binding protein, putative [	0.907	0.961	0.599	1e-155
359482846	509	PREDICTED: zinc finger protein NUTCRACKE	0.811	0.933	0.576	1e-153
356522186	498	PREDICTED: zinc finger protein NUTCRACKE	0.803	0.943	0.542	1e-143
356528841	524	PREDICTED: zinc finger protein NUTCRACKE	0.818	0.914	0.548	1e-143
302398661	539	C2H2L domain class transcription factor	0.871	0.946	0.545	1e-142
302398675	523	C2H2L domain class transcription factor	0.851	0.952	0.544	1e-137
357513641	517	Zinc finger protein [Medicago truncatula	0.842	0.953	0.527	1e-136
87162706	480	Zinc finger, C2H2-type [Medicago truncat	0.770	0.939	0.506	1e-133
357454633	545	Zinc finger protein [Medicago truncatula	0.770	0.827	0.506	1e-133

>gi|147854387|emb|CAN79105.1| hypothetical protein VITISV_006257 [Vitis vinifera]

 Score =  556 bits (1434), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 352/604 (58%), Positives = 397/604 (65%), Gaps = 112/604 (18%)

Query: 22  MSNLTSQSGTEASVSSGN-IRGAETTNHQQYFATP-----PTQAQPPAKKKRNLPGNPDP 75
           MSNLTS SG EASVSSGN    A     QQYFA P       QAQP  KKKRNLPGNPDP
Sbjct: 1   MSNLTSASG-EASVSSGNRAETAPMYPQQQYFAPPNQAQAQVQAQPSVKKKRNLPGNPDP 59

Query: 76  DAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYV 135
           DAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKE+RKKVYV
Sbjct: 60  DAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYV 119

Query: 136 CPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTRE 195
           CPE +CVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTRE
Sbjct: 120 CPEASCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTRE 179

Query: 196 YRCDCGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSSSSHHQPGIVAGASSHVNL 255
           YRCDCGTLFSRRDSFITHRAFCDALAEES RAITG NP+L SS        +   SH  +
Sbjct: 180 YRCDCGTLFSRRDSFITHRAFCDALAEESARAITG-NPVLLSSQAAAGPSSSTPHSHSQM 238

Query: 256 QIPQ---FNPQ-DFSAFSLKKEQQSYSLRQEM-PPWLGSQQPSILGSAVPGLGQPPSSSH 310
            + Q   FN   DF AF +KKEQQS+S+R E+ PPW                        
Sbjct: 239 SLQQQQQFNSNHDFHAFQMKKEQQSFSIRSEVVPPW------------------------ 274

Query: 311 TVDHLSSPSSSIFNTRLHQDHQFTQTTHQDLTRND-HPANPNPSLGPTLSVPHTNYHQAM 369
                 S SSS+F TRL  DH FTQTT QDL  +D    NPNPSLGPTL      YH  +
Sbjct: 275 -----LSSSSSLFPTRL--DHDFTQTT-QDLALHDIQNPNPNPSLGPTLPP----YHPTL 322

Query: 370 ASAFPHMSATALLQKAAQMGATMSSSKASTATGNSSSSSSPAHHAALTRPHQQPPPPQQA 429
           +   PHMSATALLQKAAQMGATMS +     TG S +S       A+ RPHQ       A
Sbjct: 323 S---PHMSATALLQKAAQMGATMSKT-----TGGSGASP-----PAMIRPHQ-------A 362

Query: 430 HVSATPEHPAGNNKTKTTTGFGLNLSSRE----GVVHGLTPFGTKTSGGG---------- 475
           HVSA  +H   N     TTGFGLNLSSRE    G V GL PFG K +             
Sbjct: 363 HVSA--DHSCNN-----TTGFGLNLSSREEMGGGFVQGLAPFGNKAAAVPSAAAAAAAAT 415

Query: 476 -------SSGPFIQEMLMNTSFSSGYAAASPFDDALTFGGVFNSKKEPHLNH-------S 521
                  S    +Q+M+ + S ++G+ ++S F+DA  FGG+ NS+K  +  H       +
Sbjct: 416 GPGGGAPSPSLLLQDMMTSLSSATGFDSSS-FEDA--FGGMLNSRKNGNNLHQTLPSKST 472

Query: 522 FNESSSLSRTSGINDHGEEMTRDFLGLRALSQTDILNIAGLGNCIDTRSSHEQQLNHSQK 581
              +++   + G  + G  +TRDFLGLRALS +DIL+IAGLG C++T S H+ Q N +QK
Sbjct: 473 TTTATTHHSSGGAGNDG--LTRDFLGLRALSHSDILSIAGLGTCMNT-SPHDHQ-NQTQK 528

Query: 582 PWQG 585
           PWQG
Sbjct: 529 PWQG 532

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572931|ref|XP_002527396.1| nucleic acid binding protein, putative [Ricinus communis] gi|223533206|gb|EEF34962.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  556 bits (1433), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 363/606 (59%), Positives = 410/606 (67%), Gaps = 75/606 (12%)

Query: 1   MMKGLIFHQQQQQQQQVLEENMSNLTSQSGTEASVSSGNIRGAETTNHQQYFA-TPPTQA 59
           MMKGLIFHQQQQQ     EENMSNLTS SG EASVSSGN R       QQYFA  PP Q+
Sbjct: 1   MMKGLIFHQQQQQ-----EENMSNLTSASG-EASVSSGN-RNETNYPPQQYFAHPPPPQS 53

Query: 60  QPPAKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPW 119
           QPPAKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPW
Sbjct: 54  QPPAKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPW 113

Query: 120 KLKQRTSKE-IRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRY 178
           KLKQRT+KE IRKKVYVCPE +CVHHDPSRALGDLTGIKKHF RKHGEKKWKCDKCSKRY
Sbjct: 114 KLKQRTNKEVIRKKVYVCPETSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKRY 173

Query: 179 AVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESTRAITGT-NPILSS 237
           AVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEES RAIT   NP+L  
Sbjct: 174 AVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITDAPNPLLIP 233

Query: 238 SSHHQPGIVAGASSHVNL-QIPQF--NPQDFSAFSLKKEQQSYS----LRQEMPPWLGSQ 290
           S+       +   + ++L Q+PQ   + Q+  AFSLKKEQQ++S    LR E+PPWL   
Sbjct: 234 SNQSAAAASSATQNPISLHQVPQLMNSHQNLHAFSLKKEQQTFSTTTALRPELPPWLAC- 292

Query: 291 QPSILGSAVPGLGQPPSSSHTVDHLSSPSSSIFNTRLHQDHQFTQTTHQDLTRNDHPANP 350
            P +LGS       PP    T       SSSI N +            QDL      +NP
Sbjct: 293 PPGVLGSGSGHGPGPPHHQQTPIEHHHLSSSILNFQ------------QDLGS----SNP 336

Query: 351 NPSLGPTLSVPHTNYHQAMASAFPHMSATALLQKAAQMGATMSSSKASTATGNSSSSSSP 410
           NPSLGPTL  PH   +QA     PHMSATALLQKAAQMGATM SSK +TA          
Sbjct: 337 NPSLGPTL--PH---YQAAPPPSPHMSATALLQKAAQMGATM-SSKTTTA---------- 380

Query: 411 AHHAALTRPHQQPPPPQQAHVSATPEHPAGNNKTKTTTGFGLNLSSRE---GVVHGLTPF 467
                + RPHQ     +QAHV+A        N    TTGF LNLSSR+       G   F
Sbjct: 381 ---GLMMRPHQHQHQHEQAHVTAD-----STNNNANTTGFVLNLSSRDQELAASGGGGSF 432

Query: 468 GTKTSGGGSSGPFIQEMLMN-TSFSSGY-----AAASPFDDALTFGGVFNSKKEPHLNHS 521
                  G++G  +QEM+ + +S +SG+     A A+ F+DA   G + NSKK+ +    
Sbjct: 433 VHSLQAAGANGVLLQEMMNSLSSAASGFEGTATATATSFEDAFVSGVLNNSKKDGN---- 488

Query: 522 FNESSSLSRTSGINDHGEEMTRDFLGLRALSQTDILNI-AGLGNCIDTRSSHE-QQLNHS 579
           F + S    T+  N+ GE++TRDFLGLRA S +DILN+ AGLGNC++T  SHE QQ N S
Sbjct: 489 FLDGSLSKATTNGNNGGEDLTRDFLGLRAFSHSDILNMAAGLGNCVNT--SHEQQQQNQS 546

Query: 580 QKPWQG 585
           QK W+G
Sbjct: 547 QKTWRG 552

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482846|ref|XP_002280155.2| PREDICTED: zinc finger protein NUTCRACKER isoform 2 [Vitis vinifera]

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 345/598 (57%), Positives = 390/598 (65%), Gaps = 123/598 (20%)

Query: 22  MSNLTSQSGTEASVSSGNIRGAETTNHQQYFATPPTQAQPPAKKKRNLPGNPDPDAEVIA 81
           MSNLTS SG EASVSSGN   AET               P  KKKRNLPGNPDPDAEVIA
Sbjct: 1   MSNLTSASG-EASVSSGNR--AET---------------PSVKKKRNLPGNPDPDAEVIA 42

Query: 82  LSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNC 141
           LSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKE+RKKVYVCPE +C
Sbjct: 43  LSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEASC 102

Query: 142 VHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCG 201
           VHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCG
Sbjct: 103 VHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCG 162

Query: 202 TLFSRRDSFITHRAFCDALAEESTRAITGTNPILSSSSHHQPGIVAGASSHVNLQIPQ-- 259
           TLFSRRDSFITHRAFCDALAEES RAITG NP+L SS        +   SH  + + Q  
Sbjct: 163 TLFSRRDSFITHRAFCDALAEESARAITG-NPVLLSSQAAAGPSSSTPHSHSQMSLQQQQ 221

Query: 260 -FNPQ-DFSAFSLKKEQQSYSLRQEM-PPWLGSQQPSILGSAVPGLGQPPSSSHTVDHLS 316
            FN   DF AF +KKEQQS+S+R E+ PPW                              
Sbjct: 222 QFNSNHDFHAFQMKKEQQSFSIRSEVVPPW-----------------------------L 252

Query: 317 SPSSSIFNTRLHQDHQFTQTTHQDLTRND-HPANPNPSLGPTLSVPHTNYHQAMASAFPH 375
           S SSS+F TRL  DH FTQTT QDL  +D    NPNPSLGPTL      YH  ++   PH
Sbjct: 253 SSSSSLFPTRL--DHDFTQTT-QDLALHDIQNPNPNPSLGPTLPP----YHPTLS---PH 302

Query: 376 MSATALLQKAAQMGATMSSSKASTATGNSSSSSSPAHHAALTRPHQQPPPPQQAHVSATP 435
           MSATALLQKAAQMGATMS +     TG S +S       A+ RPHQ       AHVSA  
Sbjct: 303 MSATALLQKAAQMGATMSKT-----TGGSGASP-----PAMIRPHQ-------AHVSA-- 343

Query: 436 EHPAGNNKTKTTTGFGLNLSSRE----GVVHGLTPFGTKTSGGG---------------- 475
           +H   N     TTGFGLNLSSRE    G V GL PFG K +                   
Sbjct: 344 DHSCNN-----TTGFGLNLSSREEMGGGFVQGLAPFGNKAAAVPSAAAAAAAATGPGGGA 398

Query: 476 -SSGPFIQEMLMNTSFSSGYAAASPFDDALTFGGVFNSKKEPHLNH-------SFNESSS 527
            S    +Q+M+ + S ++G+ ++S F+DA  FGG+ NS+K  +  H       +   +++
Sbjct: 399 PSPSLLLQDMMTSLSSATGFDSSS-FEDA--FGGMLNSRKNGNNLHQTLPSKSTTTTATT 455

Query: 528 LSRTSGINDHGEEMTRDFLGLRALSQTDILNIAGLGNCIDTRSSHEQQLNHSQKPWQG 585
              + G  + G  +TRDFLGLRALS +DIL+IAGLG C++T S H+ Q N +QKPWQG
Sbjct: 456 HHSSGGAGNDG--LTRDFLGLRALSHSDILSIAGLGTCMNT-SPHDHQ-NQTQKPWQG 509

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522186|ref|XP_003529728.1| PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max]

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 331/610 (54%), Positives = 376/610 (61%), Gaps = 140/610 (22%)

Query: 2   MKGLIFHQQQQQQQQVLEENMSNLTSQSGTEASVSSGNIRGAETTNHQQYFATPPTQAQP 61
           MKG +F+QQQQQQQ ++EENMSNLTS SG  ++ S        T     Y A PPTQ QP
Sbjct: 3   MKGFMFYQQQQQQQ-IVEENMSNLTSASGEASASSGN-----RTEIGTSYMAPPPTQIQP 56

Query: 62  PAKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL 121
           P KKKRNLPGNPDPDAEVIALSPK+L+ATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKL
Sbjct: 57  P-KKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKL 115

Query: 122 KQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQ 181
           KQRTSKE+RKKVYVCPEP+CVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSK+YAVQ
Sbjct: 116 KQRTSKEVRKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQ 175

Query: 182 SDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSSSSHH 241
           SDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEES RAI   NP+L      
Sbjct: 176 SDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAI--ANPLLP----- 228

Query: 242 QPGIVAGASSHVNLQIPQFNPQDFSAFSLKKEQQSYSLRQEMPPWLGSQQPSILGSAVPG 301
            P     +SSH++    QFNPQ+  AF LKK         EMPPWLG             
Sbjct: 229 -PQQQQSSSSHMSTLQTQFNPQNLHAFPLKK---------EMPPWLG------------- 265

Query: 302 LGQPPSSSHTVDHLSSPSSSIFNTRLHQDHQFTQTTHQDLTRNDHPANPNPSLGPTLSVP 361
               P ++  VDH  S SSSI  +  HQ+                  NPNPSLGPTL+  
Sbjct: 266 ----PPATVVVDHHLSSSSSIMFSPPHQE------------------NPNPSLGPTLAA- 302

Query: 362 HTNYHQAMASAFPHMSATALLQKAAQMGATMSSSKASTATGNSSSSSSPAHHAALTRPHQ 421
               +Q + +  PHMSATALLQKAAQMGATMS S      G++ + + P HH        
Sbjct: 303 ----YQTVPN--PHMSATALLQKAAQMGATMSRS------GSTPAMTGPHHH-------- 342

Query: 422 QPPPPQQAHVSATPEHPAGNNKTKTTTGFGLNLSSREG------------------VVHG 463
                  AHVS                 FGLNLSSRE                     HG
Sbjct: 343 -------AHVSH----------------FGLNLSSREDTTTTTPSTTTTNANTATVFSHG 379

Query: 464 L---TPFGTKTSGGGSSGPFIQEMLMNT--SFSSGYA-AASPFDDALTFGGVFNSKKEPH 517
           L   +P G K +   +       +L +   SFSS  A   +PF+DA        S K+  
Sbjct: 380 LLSSSPLGNKAAAAAAVSSSAPSLLHDVINSFSSPSAFEGTPFEDAF-----IQSSKKLD 434

Query: 518 LNHSFNESSSLSRTSGI--NDHGEEMTRDFLGLRALSQTDILNIAGLGNCIDTRSSHEQQ 575
            +H+     + S+TSG   N+  E +TRDFLGLR LS  DIL IAG+GNCI     H+QQ
Sbjct: 435 DDHNLYLHDTFSKTSGAAGNNINEGLTRDFLGLRPLSHADILTIAGIGNCI-----HDQQ 489

Query: 576 LNHSQKPWQG 585
            N SQKPWQG
Sbjct: 490 -NQSQKPWQG 498

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528841|ref|XP_003533006.1| PREDICTED: zinc finger protein NUTCRACKER-like [Glycine max]

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 329/600 (54%), Positives = 385/600 (64%), Gaps = 121/600 (20%)

Query: 19  EENMSNLTSQSGTEASVSSGNIRGAETTNHQQYFATPPTQAQPPAKKKRNLPGNPDPDAE 78
           EENMSNLTS SG  ++ SSGN     T+    Y A PP+Q Q  +KKKRNLPGNPDPDAE
Sbjct: 13  EENMSNLTSASGEASAASSGNRTEIGTS----YMAPPPSQTQQ-SKKKRNLPGNPDPDAE 67

Query: 79  VIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPE 138
           VIALSPK+L+ATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKE+RKKVYVCPE
Sbjct: 68  VIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPE 127

Query: 139 PNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRC 198
           P+CVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSK+YAVQSDWKAHSKTCGTREYRC
Sbjct: 128 PSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRC 187

Query: 199 DCGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSSSSHHQPGIVAGASSHVNLQIP 258
           DCGTLFSRRDSFITHRAFCDALAEES RAI  TNP+L      Q    +       LQ  
Sbjct: 188 DCGTLFSRRDSFITHRAFCDALAEESARAI--TNPLLPPQQQQQQPSSSSHHQMSTLQT- 244

Query: 259 QFNPQ-DFSAFSLKKEQQSYSLRQEMPPWLGSQQPSILGSAVPGLGQPPSSSHTVD---- 313
           QFNPQ +  AF LKKEQQS+++R EMPPWLG                PP+++  VD    
Sbjct: 245 QFNPQNNLHAFPLKKEQQSFNVRTEMPPWLG----------------PPAATVVVDHHHH 288

Query: 314 HLSSPSSSIFNTRLHQDHQFTQTTHQDLTRNDHPANPNPSLGPTLSVPHTNYHQAMASAF 373
           HLSS SSSI  +  HQ++                 NPNPSLGPTL+      ++ +A+  
Sbjct: 289 HLSSSSSSIMFSPPHQEN----------------PNPNPSLGPTLAA-----YKTVANP- 326

Query: 374 PHMSATALLQKAAQMGATMSSSKASTATGNSSSSSSPAHHAALTRPHQQPPPPQQAHVSA 433
           PHMSATALLQKAAQMGATMS S      G+S + + P HH               AHVS 
Sbjct: 327 PHMSATALLQKAAQMGATMSRS------GSSPAMTGPHHH---------------AHVSY 365

Query: 434 TPEHPAGNNKTKTTTGFGLNLSSREG----------------VVHGL--TPFGTKTSGGG 475
           + +  + +        FGLNLSSRE                   HGL  +P G K     
Sbjct: 366 SADSASAH--------FGLNLSSREDTTTSTTTTTTTKTATVFSHGLLSSPLGNKAGAAV 417

Query: 476 SSGP--FIQEMLMNTSFSSGYAAASPFDDALTFGGVFNSKK-------EPHLNHSFNESS 526
           SS     + +++ + S S      +PF+DA     + +SKK         +L+ +F+++S
Sbjct: 418 SSSAPSLLHDVINSFSVSPSAFEGTPFEDAF----IQSSKKLDDDDHHNLYLHDTFSKTS 473

Query: 527 SLSRTSG-INDHGEEMTRDFLGLRALSQTDILNIAGLGNCIDTRSSHEQQLNHSQKPWQG 585
           S +  +G IN   E +TRDFLGLR LS TDIL IAG+GNCI     H+ Q N SQKPWQG
Sbjct: 474 SSTGAAGNIN---EGLTRDFLGLRPLSHTDILTIAGIGNCI-----HDHQ-NQSQKPWQG 524

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398661|gb|ADL36625.1| C2H2L domain class transcription factor [Malus x domestica]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 328/601 (54%), Positives = 381/601 (63%), Gaps = 91/601 (15%)

Query: 10  QQQQQQQVLEENMSNLTSQSGTEASVSSGNIRGAETTNHQQYFATPPTQAQPPAKKKRNL 69
           QQQ  QQ+++ENMSNLTS SG  ASVSSGN     T   QQ+F TPP QAQP  KKKRNL
Sbjct: 5   QQQHSQQLVDENMSNLTSASGEAASVSSGNRNEIGTNFSQQFFTTPP-QAQPALKKKRNL 63

Query: 70  PGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEI 129
           PGNPDPDAEVIALSPKTLMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKE+
Sbjct: 64  PGNPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEV 123

Query: 130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSK 189
           RKKVYVCPE +CVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSK
Sbjct: 124 RKKVYVCPEASCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSK 183

Query: 190 TCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESTRAITGTNP---ILSSSSHHQPGIV 246
           TCGTREYRCDCGTLFSRRDSFITHRAFCDALAEES RAIT  N    +L S    Q  + 
Sbjct: 184 TCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITSANNPHHLLFSQQQQQMNLN 243

Query: 247 AGASSHVNLQIPQFNPQDFSAFSLKKEQQSY-SLRQEMPPWLGSQQPSILGSAVPGLGQP 305
                H      QFN QD   FSLKKEQQS+ +LR ++PPWLG                P
Sbjct: 244 QVQLGH------QFN-QDIHGFSLKKEQQSFTTLRPDLPPWLG----------------P 280

Query: 306 PSSSHTVDHLSSPSSSIFNTRLHQDHQFTQTTHQDLTRNDH----PANPNP---SLGPTL 358
           P+   T+D  SS S              + T HQDL+ +D       NPNP   SLGPTL
Sbjct: 281 PNC--TIDLSSSSSLF------------SPTHHQDLSLDDSHNGTSQNPNPCPSSLGPTL 326

Query: 359 SVPHTNYHQAMASAFPHMSATALLQKAAQMGATMSSSKASTATGNSSSSSSPAHHAALTR 418
                 +H A +   PHMSATALLQKAAQMGATM S K ST T  ++++++ A    + R
Sbjct: 327 PP----FHPAPS---PHMSATALLQKAAQMGATM-SGKHSTTTAAAAAAAASASPQPMVR 378

Query: 419 PHQQPPPPQQAHVSATPEHPA-----GNNKTKTTTGFGLNLSSREGVVHGLTPFGTKTSG 473
            HQ      Q H+S    H +     G N T  TTG           V G+         
Sbjct: 379 VHQH----SQGHMSEFSGHVSAFAAAGANATNITTG---------PAVSGVHHHHENQHH 425

Query: 474 GGSSGPFIQEMLMNTSFSSGYAAASPFDDAL-TFGGVFNSKKEPHLNHS-FNESSSLSRT 531
             S    + +M+ + S  +G+  A+   +A  +   + N+ K+   N + FN+S   +  
Sbjct: 426 QAS---LLHDMMNSLSSGTGFEGAAFELEAFGSLPNILNNAKKGSNNSTHFNKSG--NDD 480

Query: 532 SGINDHGEEMTRDFLGLRALSQTDILNIAGLGNCIDTRSSHEQQLNHS-------QKPWQ 584
            G N  GE +TRDFLGLRALS +DILNIAG+GNC+ + ++       +       QKPWQ
Sbjct: 481 GGAN--GEGLTRDFLGLRALSHSDILNIAGIGNCVSSANAAAAAAAVANTASRDHQKPWQ 538

Query: 585 G 585
           G
Sbjct: 539 G 539

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398675|gb|ADL36632.1| C2H2L domain class transcription factor [Malus x domestica]

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 321/589 (54%), Positives = 371/589 (62%), Gaps = 91/589 (15%)

Query: 22  MSNLTSQSGTEASVSSGNIRGAETTNHQQYFATPPTQAQPPAKKKRNLPGNPDPDAEVIA 81
           MSNLTS SG  ASVSSGN     T   QQ+F TPP QAQP  KKKRNLPGNPDPDAEVIA
Sbjct: 1   MSNLTSASGEAASVSSGNRNEIGTNFSQQFFTTPP-QAQPALKKKRNLPGNPDPDAEVIA 59

Query: 82  LSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNC 141
           LSPKTLMATNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKE+RKKVYVCPE +C
Sbjct: 60  LSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEASC 119

Query: 142 VHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCG 201
           VHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCG
Sbjct: 120 VHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCG 179

Query: 202 TLFSRRDSFITHRAFCDALAEESTRAITGTNP---ILSSSSHHQPGIVAGASSHVNLQIP 258
           TLFSRRDSFITHRAFCDALAEES RAIT  N    +L S    Q  +      H      
Sbjct: 180 TLFSRRDSFITHRAFCDALAEESARAITSANNPHHLLFSQQQQQMNLNQVQLGH------ 233

Query: 259 QFNPQDFSAFSLKKEQQSY-SLRQEMPPWLGSQQPSILGSAVPGLGQPPSSSHTVDHLSS 317
           QFN QD   FSLKKEQQS+ +LR ++PPWLG                PP+   T+D  SS
Sbjct: 234 QFN-QDIHGFSLKKEQQSFTTLRPDLPPWLG----------------PPNC--TIDLSSS 274

Query: 318 PSSSIFNTRLHQDHQFTQTTHQDLTRNDH----PANPNP---SLGPTLSVPHTNYHQAMA 370
            S              + T HQDL+ +D       NPNP   SLGPTL      +H A +
Sbjct: 275 SSLF------------SPTHHQDLSLDDSHNGTSQNPNPCPSSLGPTLPP----FHPAPS 318

Query: 371 SAFPHMSATALLQKAAQMGATMSSSKASTATGNSSSSSSPAHHAALTRPHQQPPPPQQAH 430
              PHMSATALLQKAAQMGATM S K ST T  ++++++ A    + R HQ      Q H
Sbjct: 319 ---PHMSATALLQKAAQMGATM-SGKHSTTTAAAAAAAASASPQPMVRVHQH----SQGH 370

Query: 431 VSATPEHPA-----GNNKTKTTTGFGLNLSSREGVVHGLTPFGTKTSGGGSSGPFIQEML 485
           +S    H +     G N T  TTG           V G+           S    + +M+
Sbjct: 371 MSEFSGHVSAFAAAGANATNITTG---------PAVSGVHHHHENQHHQAS---LLHDMM 418

Query: 486 MNTSFSSGYAAASPFDDAL-TFGGVFNSKKEPHLNHS-FNESSSLSRTSGINDHGEEMTR 543
            + S  +G+  A+   +A  +   + N+ K+   N + FN+S   +   G N  GE +TR
Sbjct: 419 NSLSSGTGFEGAAFELEAFGSLPNILNNAKKGSNNSTHFNKSG--NDDGGAN--GEGLTR 474

Query: 544 DFLGLRALSQTDILNIAGLGNCIDTRSSHEQQLNHS-------QKPWQG 585
           DFLGLRALS +DILNIAG+GNC+ + ++       +       QKPWQG
Sbjct: 475 DFLGLRALSHSDILNIAGIGNCVSSANAAAAAAAVANTASRDHQKPWQG 523

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357513641|ref|XP_003627109.1| Zinc finger protein [Medicago truncatula] gi|355521131|gb|AET01585.1| Zinc finger protein [Medicago truncatula]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 321/609 (52%), Positives = 375/609 (61%), Gaps = 116/609 (19%)

Query: 1   MMKGLIFHQQQQQQQQVLEENMSNLTSQSGTEASVSSGNIRGAETTNH----QQYFATPP 56
           M+KGL+  QQQQ    V+EENMSNLTS SG EASVSSGN     T++     QQ +  PP
Sbjct: 1   MVKGLMMFQQQQ----VVEENMSNLTSASG-EASVSSGNRTEIGTSSSYPQVQQQYLVPP 55

Query: 57  TQAQPPAKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHN 116
           TQ+QP  KKKRNLPGNPDPDAEVIA+SPK+L+A NRF+CEICNKGFQRDQNLQLHRRGHN
Sbjct: 56  TQSQP-MKKKRNLPGNPDPDAEVIAMSPKSLLAKNRFICEICNKGFQRDQNLQLHRRGHN 114

Query: 117 LPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSK 176
           LPWKLKQRTSKEIRKKVYVCPEP CVHHDPSRALGDLTGIKKHF RKHGEKKWKC+KCSK
Sbjct: 115 LPWKLKQRTSKEIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSK 174

Query: 177 RYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILS 236
           +YAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEES RA+T     + 
Sbjct: 175 KYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAMTNNAMPIL 234

Query: 237 SSSHHQPGIVAGASSHVNLQIPQFNP-QDFSAFS-LKKEQ--QSYSLRQEMPPWLGSQQP 292
            S        +     +NLQ    NP QD   F  LKKEQ  QS++L  E+PPWLG    
Sbjct: 235 PSQQQLSSSSSHHHHMINLQNQFNNPQQDLHNFPLLKKEQHNQSFNL-SEIPPWLG---- 289

Query: 293 SILGSAVPGLGQPPSSSHTVDHLSSPSSSIFNTRLHQDHQFTQTTHQDLTRNDHPANPNP 352
                            H VD+LSS SS       HQ+                  NPNP
Sbjct: 290 ----------------PHNVDNLSSSSSIFSQHHHHQE------------------NPNP 315

Query: 353 SL----GPTLSVPHTNYHQAMASAFPHMSATALLQKAAQMGATMSSSKASTATGNSSSSS 408
           SL    GPTL       +Q + SA  HMSATALLQKAAQMGATM+          S S+S
Sbjct: 316 SLVHVSGPTLP-----SYQTVPSA--HMSATALLQKAAQMGATMN---------RSGSAS 359

Query: 409 SPAHHAALTRPHQQPPPPQQAHVSATPEHPAGNNKTKTTTGFGLNLSSREGVVHGLTPFG 468
           SPA +              + H   +  + +GN        FGLNL S            
Sbjct: 360 SPAMNI-------------KTHQVDSLNNVSGN--------FGLNLLSSSQEQQQHQQNT 398

Query: 469 TKTSGGGSSGPFIQEMLMNTSFSSGYAAASPFDDALTFGGVFNSKKEPHLNHSFNESSSL 528
            +T+   +    I +++ ++S S     A+ FD+   FGG+ NSKK+ +L+H     +SL
Sbjct: 399 QETNTTSTYLNNIHDVMFSSSSSPSGFEATHFDE--MFGGIMNSKKDQNLHH----ETSL 452

Query: 529 SR--TSGIND---------HGEEMTRDFLGLRALSQTDILNIAGLGNCIDTRSSHEQQLN 577
           S+  TS   D           E +TRDFLGLR LS +DIL+IAG+GNC++ +    Q   
Sbjct: 453 SKKPTSTAEDGGGGGGGGGGNEGLTRDFLGLRPLSHSDILSIAGIGNCMNDQQQQNQ--- 509

Query: 578 HSQKP-WQG 585
            SQKP WQG
Sbjct: 510 -SQKPSWQG 517

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|87162706|gb|ABD28501.1| Zinc finger, C2H2-type [Medicago truncatula]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 293/578 (50%), Positives = 347/578 (60%), Gaps = 127/578 (21%)

Query: 22  MSNLTSQSGTEASVSSGN-IRGAETTNHQQYFATPPTQA--QPPAKKKRNLPGNPDPDAE 78
           MSNLTS SG  ++ SSGN     +    QQYFA+  TQ   + PAKK+RNLPGNPDP AE
Sbjct: 1   MSNLTSASGEASANSSGNRTHEVDAKFSQQYFASSQTQTHDETPAKKRRNLPGNPDPQAE 60

Query: 79  VIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPE 138
           VIALSPKTLMATNRF+CEICNKGFQRDQNLQLH+RGHNLPWKLKQRTS EIRKKVYVCPE
Sbjct: 61  VIALSPKTLMATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKQRTSNEIRKKVYVCPE 120

Query: 139 PNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRC 198
           P CVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSK+YAVQSDWKAHSKTCGTREYRC
Sbjct: 121 PTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRC 180

Query: 199 DCGTLFSRRDSFITHRAFCDALAEESTRAIT--GTNPILSSSSHHQPGIVAGASSHVNLQ 256
           DCGTLFSRRDSFITHRAFCDALAEES+R +    T P    +SHH            NLQ
Sbjct: 181 DCGTLFSRRDSFITHRAFCDALAEESSRTVIPQPTQP----NSHHNMN---------NLQ 227

Query: 257 IPQFNPQDFSAFSLKKEQQSYSLRQ-----EMPPWLGSQQPSILGSAVPGLGQPPSSSHT 311
                 QD   F+LKKE QS+++ +     ++P WL   Q SI                 
Sbjct: 228 T-----QDIQGFTLKKEHQSFNMLRPEQEVQIPSWLC--QSSI----------------- 263

Query: 312 VDHLSSPSSSIFNTRLHQDHQFTQTTHQDLTRNDHPANPNPSLGPTLSVPHTNYHQAMAS 371
              LSS  SS     L QD    +             NPNP  GPT ++P    +Q  ++
Sbjct: 264 --DLSSNYSS-----LDQDLHLYE-------------NPNPRNGPTSTLP---SYQPSSA 300

Query: 372 AFPHMSATALLQKAAQMGATMSSSKASTATGNSSSSSSPAHHAALTRPHQQPPPPQQAHV 431
           A PHMSATALLQKAAQMGAT S S  S  +G                        QQ HV
Sbjct: 301 ASPHMSATALLQKAAQMGATSSCSSQSMMSGTH----------------------QQGHV 338

Query: 432 SATPEHPAGNNKTKTTTGFGLNLSSREGVVHGLTPFGTKTSGGGSSGPFIQEMLMNTSFS 491
           S      A NN   +   F LNLSS E                        + ++N SFS
Sbjct: 339 SIVDS--ATNNMINSNGNFSLNLSSCE------------------------DQMINNSFS 372

Query: 492 SGYAAASPFDDALTFGGVFNSKKEPHLNHSFNESSSLSRTSGINDH-----GEEMTRDFL 546
           S     + F+D    G + +S ++ ++NH  +  + + +T+  +D          TRDFL
Sbjct: 373 SSGFHGTSFEDTFA-GNILHSNQDHNINH--DGDNDIPKTTTNDDDVAAGGNNAFTRDFL 429

Query: 547 GLRALSQTDILNIAGLGNCIDTRSSHEQQLNHSQKPWQ 584
           GL+ LS +DIL IAG+G+C++  +S+ Q+ NHSQKPW+
Sbjct: 430 GLKPLSDSDILTIAGMGSCMNPSNSNHQE-NHSQKPWE 466

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454633|ref|XP_003597597.1| Zinc finger protein [Medicago truncatula] gi|355486645|gb|AES67848.1| Zinc finger protein [Medicago truncatula]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 293/578 (50%), Positives = 347/578 (60%), Gaps = 127/578 (21%)

Query: 22  MSNLTSQSGTEASVSSGN-IRGAETTNHQQYFATPPTQA--QPPAKKKRNLPGNPDPDAE 78
           MSNLTS SG  ++ SSGN     +    QQYFA+  TQ   + PAKK+RNLPGNPDP AE
Sbjct: 1   MSNLTSASGEASANSSGNRTHEVDAKFSQQYFASSQTQTHDETPAKKRRNLPGNPDPQAE 60

Query: 79  VIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPE 138
           VIALSPKTLMATNRF+CEICNKGFQRDQNLQLH+RGHNLPWKLKQRTS EIRKKVYVCPE
Sbjct: 61  VIALSPKTLMATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKQRTSNEIRKKVYVCPE 120

Query: 139 PNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRC 198
           P CVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSK+YAVQSDWKAHSKTCGTREYRC
Sbjct: 121 PTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRC 180

Query: 199 DCGTLFSRRDSFITHRAFCDALAEESTRAIT--GTNPILSSSSHHQPGIVAGASSHVNLQ 256
           DCGTLFSRRDSFITHRAFCDALAEES+R +    T P    +SHH            NLQ
Sbjct: 181 DCGTLFSRRDSFITHRAFCDALAEESSRTVIPQPTQP----NSHHNMN---------NLQ 227

Query: 257 IPQFNPQDFSAFSLKKEQQSYSLRQ-----EMPPWLGSQQPSILGSAVPGLGQPPSSSHT 311
                 QD   F+LKKE QS+++ +     ++P WL   Q SI                 
Sbjct: 228 T-----QDIQGFTLKKEHQSFNMLRPEQEVQIPSWLC--QSSI----------------- 263

Query: 312 VDHLSSPSSSIFNTRLHQDHQFTQTTHQDLTRNDHPANPNPSLGPTLSVPHTNYHQAMAS 371
              LSS  SS     L QD    +             NPNP  GPT ++P    +Q  ++
Sbjct: 264 --DLSSNYSS-----LDQDLHLYE-------------NPNPRNGPTSTLP---SYQPSSA 300

Query: 372 AFPHMSATALLQKAAQMGATMSSSKASTATGNSSSSSSPAHHAALTRPHQQPPPPQQAHV 431
           A PHMSATALLQKAAQMGAT S S  S  +G                        QQ HV
Sbjct: 301 ASPHMSATALLQKAAQMGATSSCSSQSMMSGTH----------------------QQGHV 338

Query: 432 SATPEHPAGNNKTKTTTGFGLNLSSREGVVHGLTPFGTKTSGGGSSGPFIQEMLMNTSFS 491
           S      A NN   +   F LNLSS E                        + ++N SFS
Sbjct: 339 SIVDS--ATNNMINSNGNFSLNLSSCE------------------------DQMINNSFS 372

Query: 492 SGYAAASPFDDALTFGGVFNSKKEPHLNHSFNESSSLSRTSGINDH-----GEEMTRDFL 546
           S     + F+D    G + +S ++ ++NH  +  + + +T+  +D          TRDFL
Sbjct: 373 SSGFHGTSFEDTFA-GNILHSNQDHNINH--DGDNDIPKTTTNDDDVAAGGNNAFTRDFL 429

Query: 547 GLRALSQTDILNIAGLGNCIDTRSSHEQQLNHSQKPWQ 584
           GL+ LS +DIL IAG+G+C++  +S+ Q+ NHSQKPW+
Sbjct: 430 GLKPLSDSDILTIAGMGSCMNPSNSNHQE-NHSQKPWE 466

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	585
TAIR|locus:2205672	455	IDD7 "AT1G55110" [Arabidopsis	0.529	0.681	0.591	1.5e-112
TAIR|locus:2051698	602	IDD5 "AT2G02070" [Arabidopsis	0.297	0.289	0.819	2.8e-96
TAIR|locus:2024193	506	MGP "AT1G03840" [Arabidopsis t	0.376	0.434	0.693	7.8e-94
TAIR|locus:2173624	500	IDD1 "AT5G66730" [Arabidopsis	0.273	0.32	0.906	2.3e-92
TAIR|locus:2101739	452	IDD2 "AT3G50700" [Arabidopsis	0.422	0.546	0.615	3.9e-89
TAIR|locus:2132397	402	IDD12 "AT4G02670" [Arabidopsis	0.377	0.549	0.683	4.1e-87
TAIR|locus:2078262	446	AT3G45260 "AT3G45260" [Arabido	0.541	0.710	0.542	8.9e-86
TAIR|locus:2167608	466	NUC "AT5G44160" [Arabidopsis t	0.523	0.656	0.547	1.3e-84
TAIR|locus:2051688	516	IDD4 "indeterminate(ID)-domain	0.545	0.618	0.516	1.3e-84
TAIR|locus:2143543	503	JKD "AT5G03150" [Arabidopsis t	0.531	0.618	0.528	1.3e-84

TAIR|locus:2205672 IDD7 "AT1G55110" [Arabidopsis thaliana (taxid:3702)]

 Score = 948 (338.8 bits), Expect = 1.5e-112, Sum P(3) = 1.5e-112
 Identities = 194/328 (59%), Positives = 226/328 (68%)

Query:     1 MMKGLIFHXXXXXXXXVLEENMSNLTSQSGTEASVSSGNIRGAETTNHQQYFXXXXXXXX 60
             M + ++FH         +EENMSNLTS SG +ASVSSGN      +N  Q+         
Sbjct:     3 MNRDILFHQQQQQQ---MEENMSNLTSASGDQASVSSGNRTETSGSNINQHHQEQCFVPQ 59

Query:    61 XXXXXXRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWK 120
                   RN PGNPDP+AEV+ALSPKTLMATNRF+CE+CNKGFQRDQNLQLH+RGHNLPWK
Sbjct:    60 SSLKRKRNQPGNPDPEAEVMALSPKTLMATNRFICEVCNKGFQRDQNLQLHKRGHNLPWK 119

Query:   121 LKQRTSKEI-RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYA 179
             LKQR++K++ RKKVYVCPEP CVHH PSRALGDLTGIKKHF RKHGEKKWKC+KCSK+YA
Sbjct:   120 LKQRSNKDVVRKKVYVCPEPGCVHHHPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKKYA 179

Query:   180 VQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSSSS 239
             VQSDWKAH+KTCGT+EY+CDCGTLFSRRDSFITHRAFCDALAEES RA+   NPI+  +S
Sbjct:   180 VQSDWKAHAKTCGTKEYKCDCGTLFSRRDSFITHRAFCDALAEESARAMP--NPIMIQAS 237

Query:   240 ------HHQPGIVAGASSHVNLQIPQFNPQDFSAFSLKKEQQSYSLRQEMPPWLGSQQPS 293
                   HHQ     G SS     I   N        +K+E+  +   Q +PPWL S  P+
Sbjct:   238 NSPHHHHHQTQQNIGFSSSSQNIISNSNLHG----PMKQEESQHHY-QNIPPWLISSNPN 292

Query:   294 ILGSAVPGLGQPPSSSHTVDHLSSPSSS 321
               G+    L  P +SS      S P  S
Sbjct:   293 PNGNN-GNLFPPVASSVNTGRSSFPHPS 319

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

TAIR|locus:2051698 IDD5 "AT2G02070" [Arabidopsis thaliana (taxid:3702)]

 Score = 823 (294.8 bits), Expect = 2.8e-96, Sum P(4) = 2.8e-96
 Identities = 145/177 (81%), Positives = 161/177 (90%)

Query:    67 RNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTS 126
             RN P  P+ DAEVIALSPKTLMATNRF+CE+CNKGFQR+QNLQLHRRGHNLPWKLKQ+++
Sbjct:    55 RNQPRTPNSDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKST 114

Query:   127 KEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKA 186
             KE+++KVY+CPEP+CVHHDPSRALGDLTGIKKH+ RKHGEKKWKCDKCSKRYAVQSDWKA
Sbjct:   115 KEVKRKVYLCPEPSCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAVQSDWKA 174

Query:   187 HSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSSSSHHQP 243
             HSKTCGT+EYRCDCGTLFSRRDSFITHRAFCDALA+ES R  T    + S  SHH P
Sbjct:   175 HSKTCGTKEYRCDCGTLFSRRDSFITHRAFCDALAQESARHPTS---LTSLPSHHFP 228

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006417 "regulation of translation" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2024193 MGP "AT1G03840" [Arabidopsis thaliana (taxid:3702)]

 Score = 858 (307.1 bits), Expect = 7.8e-94, Sum P(3) = 7.8e-94
 Identities = 161/232 (69%), Positives = 186/232 (80%)

Query:    25 LTSQSGTEASVSSGNIRGAETTNHQQYFXXXXXXXXX--XXXXXRNLPGNPDPDAEVIAL 82
             +T++  T +S S G ++ + TT+H  +                 RNLPGNPDP+AEVIAL
Sbjct:     1 MTTEDQTISS-SGGYVQSSSTTDHVDHHHHDQHESLNPPLVKKKRNLPGNPDPEAEVIAL 59

Query:    83 SPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCV 142
             SPKTLMATNRF+CEIC KGFQRDQNLQLHRRGHNLPWKLKQRTSKE+RK+VYVCPE +CV
Sbjct:    60 SPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKSCV 119

Query:   143 HHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGT 202
             HH P+RALGDLTGIKKHFCRKHGEKKWKC+KC+KRYAVQSDWKAHSKTCGTREYRCDCGT
Sbjct:   120 HHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGT 179

Query:   203 LFSRRDSFITHRAFCDALAEESTRAITGTNPILSSSSHHQPGIVAGASSHVN 254
             +FSRRDSFITHRAFCDALAEE+ R        L+++SH +    A A S++N
Sbjct:   180 IFSRRDSFITHRAFCDALAEETAR--------LNAASHLK-SFAATAGSNLN 222

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2173624 IDD1 "AT5G66730" [Arabidopsis thaliana (taxid:3702)]

 Score = 832 (297.9 bits), Expect = 2.3e-92, Sum P(3) = 2.3e-92
 Identities = 145/160 (90%), Positives = 154/160 (96%)

Query:    67 RNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTS 126
             RNLPG PDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL+QR++
Sbjct:    35 RNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRST 94

Query:   127 KEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKA 186
             KE+RKKVYVCP   CVHHDPSRALGDLTGIKKHFCRKHGEKKWKC+KCSK+YAVQSDWKA
Sbjct:    95 KEVRKKVYVCPVSGCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKA 154

Query:   187 HSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESTR 226
             HSK CGT+EY+CDCGTLFSRRDSFITHRAFCDALAEES +
Sbjct:   155 HSKICGTKEYKCDCGTLFSRRDSFITHRAFCDALAEESAK 194

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009937 "regulation of gibberellic acid mediated signaling pathway" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=IMP

GO:0010431 "seed maturation" evidence=IMP

TAIR|locus:2101739 IDD2 "AT3G50700" [Arabidopsis thaliana (taxid:3702)]

 Score = 839 (300.4 bits), Expect = 3.9e-89, Sum P(2) = 3.9e-89
 Identities = 165/268 (61%), Positives = 199/268 (74%)

Query:    67 RNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTS 126
             RNLPG PDP++EVIALSPKTL+ATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL+Q+++
Sbjct:    37 RNLPGMPDPESEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQKSN 96

Query:   127 KEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKA 186
             KE++KKVYVCPE +CVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSK+YAVQSDWKA
Sbjct:    97 KEVKKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKA 156

Query:   187 HSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSSSSHHQPGIV 246
             HSK CGT+EY+CDCGTLFSRRDSFITHRAFCDALAEE+ R+        S S    P I+
Sbjct:   157 HSKICGTKEYKCDCGTLFSRRDSFITHRAFCDALAEENARSHH------SQSKKQNPEIL 210

Query:   247 AGASSHVNLQIPQFNPQDFSAFSLKKEQQSYSLRQ----EMPPWLGSQQPS------ILG 296
                +   N  +P   P D  +  +K    + +++Q    + PP +  + P       +  
Sbjct:   211 TRKNPVPN-PVPA--PVDTESAKIKSSS-TLTIKQSESPKTPPEIVQEAPKPTSLNVVTS 266

Query:   297 SAV-PGLGQPPSSSHTVDHLSSPSSSIF 323
             + V  GL +  S+S ++   SS S S+F
Sbjct:   267 NGVFAGLFESSSASPSIYTTSSSSKSLF 294

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2132397 IDD12 "AT4G02670" [Arabidopsis thaliana (taxid:3702)]

 Score = 820 (293.7 bits), Expect = 4.1e-87, Sum P(3) = 4.1e-87
 Identities = 158/231 (68%), Positives = 174/231 (75%)

Query:    21 NMSNLTSQSGTEASVSSGN--IRGAETTN--HQQYFXXXXXXXXXXXXXXRNLPGNPDPD 76
             ++S   S   TEAS SSGN  +   +  +  H                  R LPGNPDPD
Sbjct:     6 SLSYKLSSLSTEASASSGNNTLSTIQEFSGFHNVISSVCTHTETHKPKKKRGLPGNPDPD 65

Query:    77 AEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEI-RKKVYV 135
             AEVIALSPKTL+ATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQ+ +KE  +KKVYV
Sbjct:    66 AEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQKNTKEQQKKKVYV 125

Query:   136 CPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTRE 195
             CPE NC HH PSRALGDLTGIKKHFCRKHGEKKWKC+KCSK YAVQSDWKAH+K CGTR+
Sbjct:   126 CPETNCAHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKFYAVQSDWKAHTKICGTRD 185

Query:   196 YRCDCGTLFSRRDSFITHRAFCDALAEESTRAITG-----TNPILSSSSHH 241
             YRCDCGTLFSR+D+FITHRAFCDALAEES R  +      TNP  +   HH
Sbjct:   186 YRCDCGTLFSRKDTFITHRAFCDALAEESARLHSTSSSNLTNPNPNFQGHH 236

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2078262 AT3G45260 "AT3G45260" [Arabidopsis thaliana (taxid:3702)]

 Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
 Identities = 179/330 (54%), Positives = 212/330 (64%)

Query:    67 RNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTS 126
             RNLPGNPDPDAEVIALSP +LM TNRF+CE+CNKGF+RDQNLQLHRRGHNLPWKLKQRT+
Sbjct:    42 RNLPGNPDPDAEVIALSPNSLMTTNRFICEVCNKGFKRDQNLQLHRRGHNLPWKLKQRTN 101

Query:   127 KE-IRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWK 185
             KE ++KKVY+CPE  CVHHDP+RALGDLTGIKKHF RKHGEKKWKCDKCSK+YAV SDWK
Sbjct:   102 KEQVKKKVYICPEKTCVHHDPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVMSDWK 161

Query:   186 AHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSSSSHHQPGI 245
             AHSK CGT+EYRCDCGTLFSR+DSFITHRAFCDALAEES R ++   P  +  ++     
Sbjct:   162 AHSKICGTKEYRCDCGTLFSRKDSFITHRAFCDALAEESARFVS-VPPAPAYLNNALDVE 220

Query:   246 VAGASSHVNLQIPQFNPQDFSAFSLKKEQQSYSLRQEMPPWLGSQQPS--ILGSAVPGLG 303
             V   + + N Q  Q N       S + +Q  ++  +    +LG   P+     S+ P   
Sbjct:   221 VNHGNINQNHQQRQLNTT-----SSQLDQPGFNTNRNNIAFLGQTLPTNVFASSSSPSPR 275

Query:   304 QPPSSSHTVDHLSSPSSS--IFNTRXXXXXXXXXXXXXXXXRNDHPAN--PNPSLGPTLS 359
                 S   + HL   SS   + N                        N   N SL  + +
Sbjct:   276 SASDSLQNLWHLQGQSSHQWLLNENNNNNNNILQRGISKNQEEHEMKNVISNGSLFSSEA 335

Query:   360 VPHTNYHQAMASAFPHMSATALLQKAAQMG 389
               +TN +         MSATALLQKAAQMG
Sbjct:   336 RNNTNNYNQNGGQIASMSATALLQKAAQMG 365

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2167608 NUC "AT5G44160" [Arabidopsis thaliana (taxid:3702)]

 Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
 Identities = 179/327 (54%), Positives = 207/327 (63%)

Query:    67 RNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTS 126
             RNLPGNPDP+AEVIALSP TLMATNRF+CE+C KGFQRDQNLQLHRRGHNLPWKLKQRTS
Sbjct:    40 RNLPGNPDPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTS 99

Query:   127 KEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKA 186
             KE+RK+VYVCPE  CVHH  SRALGDLTGIKKHFCRKHGEKKW C+KC+KRYAVQSDWKA
Sbjct:   100 KEVRKRVYVCPEKTCVHHHSSRALGDLTGIKKHFCRKHGEKKWTCEKCAKRYAVQSDWKA 159

Query:   187 HSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSSSSHHQPGIV 246
             HSKTCGTREYRCDCGT+FSRRDSFITHRAFCDALAEE+ +        +++ SH      
Sbjct:   160 HSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETAK--------INAVSHLNGLAA 211

Query:   247 AGASSHVNLQ----IPQFNPQDFSAFSLKKEQQSYSLRQEMPPWLGSQQPSILGSAVPGL 302
             AGA   VNL     +  F P     F  + +       Q   P   S     +G  +   
Sbjct:   212 AGAPGSVNLNYQYLMGTFIPP-LQPFVPQPQTNPNHHHQHFQPPTSSSLSLWMGQDIAPP 270

Query:   303 GQPPSSSHTVDHLSSPSSSIFNTRXXXXXXXXXXXXXXXXRNDHPANPNPSLGPTLSVPH 362
                P       +  + S+ I N                       A   PSL  +    +
Sbjct:   271 QPQPDYDWVFGNAKAASACIDNNNTHDEQITQNANASLTTTTTLSA---PSLFSSDQPQN 327

Query:   363 TNYHQAMASAFPHMSATALLQKAAQMG 389
              N     A++  +MSATALLQKAA++G
Sbjct:   328 AN-----ANSNVNMSATALLQKAAEIG 349

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0010260 "organ senescence" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=IMP

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2051688 IDD4 "indeterminate(ID)-domain 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
 Identities = 174/337 (51%), Positives = 221/337 (65%)

Query:    67 RNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTS 126
             RN PGNP+PDAEV+ALSPKTLMATNRF+C++CNKGFQR+QNLQLHRRGHNLPWKLKQ+++
Sbjct:    57 RNQPGNPNPDAEVVALSPKTLMATNRFICDVCNKGFQREQNLQLHRRGHNLPWKLKQKST 116

Query:   127 KEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKA 186
             KE+++KVY+CPEP CVHHDPSRALGDLTGIKKH+ RKHGEKKWKC+KCSKRYAVQSDWKA
Sbjct:   117 KEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCEKCSKRYAVQSDWKA 176

Query:   187 HSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESTR--AITGTNPILSSSSHHQPG 244
             HSKTCGT+EYRCDCGT+FSRRDS+ITHRAFCDAL +E+ R   ++ T+   +SS     G
Sbjct:   177 HSKTCGTKEYRCDCGTIFSRRDSYITHRAFCDALIQETARNPTVSFTSMTAASSGVGSGG 236

Query:   245 I---VAGAS--SHVNLQI-PQFNPQDFSAFSLK----KEQQSYSLRQEMPPWL--GSQQP 292
             I   + G S  SH +L   P F       ++L       ++ +  +   P +L   +   
Sbjct:   237 IYGRLGGGSALSHHHLSDHPNFGFNPLVGYNLNIASSDNRRDFIPQSSNPNFLIQSASSQ 296

Query:   293 SILGSAVPGLGQPPSSSHTVDHLSSPSSSIFNTRXXXXXXXXXXXXXXXXRNDHPANPNP 352
              +L +      Q   + H +     P  +I N +                   +     P
Sbjct:   297 GMLNTTPNNNNQSFMNQHGLIQFD-PVDNI-NLKSSGTNNSFFNLGFFQENTKNSETSLP 354

Query:   353 SLGPTLSVPHTNYHQAMASAFPHMSATALLQKAAQMG 389
             SL  T  + H  + +   +A  ++SATALLQKA QMG
Sbjct:   355 SLYSTDVLVH--HREENLNAGSNVSATALLQKATQMG 389

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2143543 JKD "AT5G03150" [Arabidopsis thaliana (taxid:3702)]

 Score = 824 (295.1 bits), Expect = 1.3e-84, Sum P(2) = 1.3e-84
 Identities = 179/339 (52%), Positives = 208/339 (61%)

Query:    67 RNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTS 126
             RN PG PDPDA+VIALSP TLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQR+ 
Sbjct:    56 RNQPGTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSK 115

Query:   127 KE-IRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWK 185
             +E I+KKVY+CP   CVHHD SRALGDLTGIKKH+ RKHGEKKWKC+KCSK+YAVQSDWK
Sbjct:   116 QEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWK 175

Query:   186 AHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESTR--AITGTNPILSSSS---- 239
             AH+KTCGTREY+CDCGTLFSR+DSFITHRAFCDAL EE  R  +++  NP++S+++    
Sbjct:   176 AHAKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEEGARMSSLSNNNPVISTTNLNFG 235

Query:   240 -----HHQPGIVAGASSHVNLQIPQFNPQDFSAFSLKKEQQSYSLR----QEMPPWLGSQ 290
                   + P +  G   H  +  P  N    S F L       ++      EM     + 
Sbjct:   236 NESNVMNNPNLPHGFV-HRGVHHPDINAA-ISQFGLGFGHDLSAMHAQGLSEMVQMASTG 293

Query:   291 QPSILGSAVPGLGQPPSSSHTVDHLSSPSSSIFNTRXXXXXXXXXXXXXXXXRNDHPANP 350
                +  S+   L  P  S H       P +S   T                    H    
Sbjct:   294 NHHLFPSSSSSL--PDFSGH--HQFQIPMTS---TNPSLTLSSSSTSQQTSASLQHQTLK 346

Query:   351 NPSLGPTLSVPHTNYHQAMASAFPHMSATALLQKAAQMG 389
             + S  P  S    N      S  P MSATALLQKAAQMG
Sbjct:   347 DSSFSPLFSSSSENKQNKPLS--P-MSATALLQKAAQMG 382

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010075 "regulation of meristem growth" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0048364 "root development" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IMP

GO:0045604 "regulation of epidermal cell differentiation" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034183001 SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (513 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	585
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.88
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.88
KOG3576	267	consensus Ovo and related transcription factors [T	99.68
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.63
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.62
KOG3608	467	consensus Zn finger proteins [General function pre	99.61
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.55
KOG3576	267	consensus Ovo and related transcription factors [T	99.5
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.37
KOG3608	467	consensus Zn finger proteins [General function pre	99.28
PLN03086	567	PRLI-interacting factor K; Provisional	99.1
PHA00733	128	hypothetical protein	98.83
PLN03086	567	PRLI-interacting factor K; Provisional	98.81
PHA00733	128	hypothetical protein	98.77
KOG3993	500	consensus Transcription factor (contains Zn finger	98.59
PHA02768	55	hypothetical protein; Provisional	98.54
PHA02768	55	hypothetical protein; Provisional	98.34
KOG3993	500	consensus Transcription factor (contains Zn finger	98.27
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.16
PF01352	41	KRAB: KRAB box; InterPro: IPR001909 The Krueppel-a	97.74
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.67
PHA00616	44	hypothetical protein	97.65
PHA00732	79	hypothetical protein	97.63
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	97.62
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.58
PHA00616	44	hypothetical protein	97.46
PHA00732	79	hypothetical protein	97.37
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	97.22
KOG1146	1406	consensus Homeobox protein [General function predi	97.11
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	96.92
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	96.89
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.83
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	96.7
COG5048	467	FOG: Zn-finger [General function prediction only]	96.4
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.39
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.35
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.2
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.02
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	95.91
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	95.83
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	95.39
COG5048	467	FOG: Zn-finger [General function prediction only]	95.29
PRK04860	160	hypothetical protein; Provisional	94.88
PRK04860	160	hypothetical protein; Provisional	94.76
smart00355	26	ZnF_C2H2 zinc finger.	94.69
smart00355	26	ZnF_C2H2 zinc finger.	94.52
KOG1146	1406	consensus Homeobox protein [General function predi	94.27
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	94.17
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	92.47
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	91.96
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	91.72
KOG2893	341	consensus Zn finger protein [General function pred	91.57
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	91.56
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	90.52
COG5236	493	Uncharacterized conserved protein, contains RING Z	89.75
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	89.69
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	89.59
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	89.17
KOG4173	253	consensus Alpha-SNAP protein [Intracellular traffi	88.02
KOG2482	423	consensus Predicted C2H2-type Zn-finger protein [T	87.29
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	86.17
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	84.01
KOG2893	341	consensus Zn finger protein [General function pred	83.86
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	83.49
KOG2186	276	consensus Cell growth-regulating nucleolar protein	82.57
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	82.56
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	80.05

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.88  E-value=4.6e-24  Score=210.85  Aligned_cols=136  Identities=19%  Similarity=0.403  Sum_probs=125.7

Q ss_pred             ccCcccccccCcccccccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcc
Q 007898           89 ATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKK  168 (585)
Q Consensus        89 ~~kpy~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekp  168 (585)
                      ...+|+|.+|||.|.+..+|.+|..+|..          ....+.+.|++||       |.|.....|+.|+|+|+  -+
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~----------~~s~ka~~C~~C~-------K~YvSmpALkMHirTH~--l~  187 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHRS----------LDSKKAFSCKYCG-------KVYVSMPALKMHIRTHT--LP  187 (279)
T ss_pred             cCCceeccccccccccccccchhhccccc----------ccccccccCCCCC-------ceeeehHHHhhHhhccC--CC
Confidence            45789999999999999999999999961          1157889999996       99999999999999997  57


Q ss_pred             ccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCChHHHHHHHHHhhhccccccccccCCCCccCCCCCCCCCcC
Q 007898          169 WKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSSSSHHQPGIV  246 (585)
Q Consensus       169 y~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~~~h~~~~~~~~r~ht~ekp~~cs~c~~sf~~~  246 (585)
                      ++|.+|||.|.+..-|..|+|+ +|||||.|. |+|.|..+++|+.|+           .+|++.|.|+|..|+++|+..
T Consensus       188 c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHm-----------QTHS~~K~~qC~~C~KsFsl~  256 (279)
T KOG2462|consen  188 CECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHM-----------QTHSDVKKHQCPRCGKSFALK  256 (279)
T ss_pred             cccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHH-----------HhhcCCccccCcchhhHHHHH
Confidence            9999999999999999999999 899999999 999999999999999           677889999999999999999


Q ss_pred             CCcccccc
Q 007898          247 AGASSHVN  254 (585)
Q Consensus       247 s~l~sH~~  254 (585)
                      +-|..|+-
T Consensus       257 SyLnKH~E  264 (279)
T KOG2462|consen  257 SYLNKHSE  264 (279)
T ss_pred             HHHHHhhh
Confidence            99999964

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.88  E-value=2.4e-23  Score=205.78  Aligned_cols=133  Identities=23%  Similarity=0.412  Sum_probs=121.2

Q ss_pred             CcccccCCCCCCCCCCchhhccCccccc---ccCcccccccCcccccccccchhcccccCccccccchhhhccccccccC
Q 007898           61 PPAKKKRNLPGNPDPDAEVIALSPKTLM---ATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCP  137 (585)
Q Consensus        61 ~p~k~k~~~~~~~~~~~~~~~~~~k~~~---~~kpy~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  137 (585)
                      ...+.++..|++.......+..|..+|-   ..+.+.|++|+|.|.....|+.|+|+|+               -+++|.
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~---------------l~c~C~  191 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHT---------------LPCECG  191 (279)
T ss_pred             cCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccC---------------CCcccc
Confidence            4556677778887777788888888773   3789999999999999999999999996               578999


Q ss_pred             CCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCChHHHHHHHH
Q 007898          138 EPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRA  215 (585)
Q Consensus       138 ~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~~  215 (585)
                      +||       |.|.+..-|+-|+|+|+|||||.|..|+|+|..+++|+.||++ .+.|+|.|. |+|+|.+++.|.+|..
T Consensus       192 iCG-------KaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~E  264 (279)
T KOG2462|consen  192 ICG-------KAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSE  264 (279)
T ss_pred             ccc-------ccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHHHHHHHhhh
Confidence            996       9999999999999999999999999999999999999999999 588999999 9999999999999984

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.68  E-value=2.6e-17  Score=155.56  Aligned_cols=115  Identities=23%  Similarity=0.526  Sum_probs=105.5

Q ss_pred             ccccCcccccccCcccccccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCC
Q 007898           87 LMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGE  166 (585)
Q Consensus        87 ~~~~kpy~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htge  166 (585)
                      -.+...|.|.+|+|.|....-|.+|++.|.             .-|.|-|..||       |.|.+.-+|++|+|+|+|.
T Consensus       112 ssd~d~ftCrvCgK~F~lQRmlnrh~kch~-------------~vkr~lct~cg-------kgfndtfdlkrh~rthtgv  171 (267)
T KOG3576|consen  112 SSDQDSFTCRVCGKKFGLQRMLNRHLKCHS-------------DVKRHLCTFCG-------KGFNDTFDLKRHTRTHTGV  171 (267)
T ss_pred             CCCCCeeeeehhhhhhhHHHHHHHHhhhcc-------------HHHHHHHhhcc-------CcccchhhhhhhhccccCc
Confidence            344678999999999999999999999998             88999999996       9999999999999999999


Q ss_pred             ccccccccCCcccChhHHHHHHHH-hC-----------CcceecC-CCCccCChHHHHHHHHHhhhcc
Q 007898          167 KKWKCDKCSKRYAVQSDWKAHSKT-CG-----------TREYRCD-CGTLFSRRDSFITHRAFCDALA  221 (585)
Q Consensus       167 kpy~C~~CgK~F~~~s~L~~H~r~-hg-----------ekpy~C~-Cgk~F~~~s~L~~H~~~h~~~~  221 (585)
                      +||+|..|+|.|..+..|..|.+. ||           +|.|.|+ ||.+-.+...+..|++.||...
T Consensus       172 rpykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~S  239 (267)
T KOG3576|consen  172 RPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPFS  239 (267)
T ss_pred             cccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCCCC
Confidence            999999999999999999999887 86           3679999 9999999999999998887654

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.63  E-value=9.6e-17  Score=177.26  Aligned_cols=66  Identities=20%  Similarity=0.402  Sum_probs=58.6

Q ss_pred             cccCCCCCCCCcccccCCCCCCCCCCchhhccCcccccccCcccccccCcccccccccchhccccc
Q 007898           51 YFATPPTQAQPPAKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHN  116 (585)
Q Consensus        51 ~~~~~~~~~~~p~k~k~~~~~~~~~~~~~~~~~~k~~~~~kpy~C~~Cgk~F~~~~~L~~H~r~H~  116 (585)
                      +........++-.+.+|..|.+-+.....+..|.++|++++||+|++||..|.++.+|+.|...|+
T Consensus       340 ~~~v~~~~~~~~~khkCr~CakvfgS~SaLqiHlRSHTGERPfqCnvCG~~FSTkGNLKvH~~rH~  405 (958)
T KOG1074|consen  340 YFSVEGPSEKPFFKHKCRFCAKVFGSDSALQIHLRSHTGERPFQCNVCGNRFSTKGNLKVHFQRHR  405 (958)
T ss_pred             ccccccCCccccccchhhhhHhhcCchhhhhhhhhccCCCCCeeecccccccccccceeeeeeecc
Confidence            444455566778889999999999999999999999999999999999999999999999988886

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.62  E-value=1.5e-16  Score=175.85  Aligned_cols=82  Identities=17%  Similarity=0.381  Sum_probs=70.3

Q ss_pred             ccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCChHHHHHHHHHhhhccccccccccCCCCccCC---CCCCCC
Q 007898          169 WKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSS---SSHHQP  243 (585)
Q Consensus       169 y~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~~~h~~~~~~~~r~ht~ekp~~cs---~c~~sf  243 (585)
                      ..|-+|.++..-++.|+.|.|+ +|||||+|+ ||+.|.+|.+|+.|+-+|...       +.-.-.++|.   +|.+.|
T Consensus       606 NqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~-------p~~R~q~ScP~~~ic~~kf  678 (958)
T KOG1074|consen  606 NQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAK-------PPARVQFSCPSTFICQKKF  678 (958)
T ss_pred             cceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccC-------ccccccccCCchhhhcccc
Confidence            4799999999999999999999 799999999 999999999999999777532       2333568899   999999


Q ss_pred             CcCCCccccccccc
Q 007898          244 GIVAGASSHVNLQI  257 (585)
Q Consensus       244 ~~~s~l~sH~~~~~  257 (585)
                      ...-.+..|+++|.
T Consensus       679 tn~V~lpQhIriH~  692 (958)
T KOG1074|consen  679 TNAVTLPQHIRIHL  692 (958)
T ss_pred             cccccccceEEeec
Confidence            99999999999876

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.61  E-value=1.8e-16  Score=160.42  Aligned_cols=193  Identities=16%  Similarity=0.227  Sum_probs=152.0

Q ss_pred             CCCCCCCCCchhhccCcccccccCcccccccCcccccccccchhccccc----Ccccccc---------chhhhc--ccc
Q 007898           68 NLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHN----LPWKLKQ---------RTSKEI--RKK  132 (585)
Q Consensus        68 ~~~~~~~~~~~~~~~~~k~~~~~kpy~C~~Cgk~F~~~~~L~~H~r~H~----~~~~~~~---------~~~~~~--~~k  132 (585)
                      ..|.....+...+..|.++|+++|...|+.||.-|.++..|..|.+.-+    .++.|+.         ....|+  .-.
T Consensus       183 ~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn  262 (467)
T KOG3608|consen  183 AMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVN  262 (467)
T ss_pred             hhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhh
Confidence            4444555566778899999999999999999999999999999987654    3344332         111222  235


Q ss_pred             ccccCCCCcccCCCCCccCChhhhhhhhc-cccCCccccccccCCcccChhHHHHHHHHhCCcceecC---CCCccCChH
Q 007898          133 VYVCPEPNCVHHDPSRALGDLTGIKKHFC-RKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCD---CGTLFSRRD  208 (585)
Q Consensus       133 ~y~C~~CgC~~~~~~k~F~~~~~L~~H~r-~Htgekpy~C~~CgK~F~~~s~L~~H~r~hgekpy~C~---Cgk~F~~~s  208 (585)
                      .|+|+.|.       -.....+.|.+|++ .|..+|||+|+.|++.|.+.++|.+|..+|.+..|.|+   |...|+.+.
T Consensus       263 ~ykCplCd-------mtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~~y~C~h~~C~~s~r~~~  335 (467)
T KOG3608|consen  263 CYKCPLCD-------MTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSKTVYQCEHPDCHYSVRTYT  335 (467)
T ss_pred             cccccccc-------cCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhccccceecCCCCCcHHHHHHH
Confidence            78999994       88888899999988 57788999999999999999999999999888889997   999999999


Q ss_pred             HHHHHHHHhhhccccccccccCCCCccCCCCCCCCCcCCCcccccccccCCCCCCcccccccchhhh
Q 007898          209 SFITHRAFCDALAEESTRAITGTNPILSSSSHHQPGIVAGASSHVNLQIPQFNPQDFSAFSLKKEQQ  275 (585)
Q Consensus       209 ~L~~H~~~h~~~~~~~~r~ht~ekp~~cs~c~~sf~~~s~l~sH~~~~~~~~~~~~~~~~~~k~eqq  275 (585)
                      .|++|++-++...        .+.+|.|..|.+.|.+..+|..|+...+...-+.....|.+|..+.
T Consensus       336 q~~~H~~evhEg~--------np~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~~PsGh~RFtYk~~ed  394 (467)
T KOG3608|consen  336 QMRRHFLEVHEGN--------NPILYACHCCDRFFTSGKSLSAHLMKKHGFRLPSGHKRFTYKVDED  394 (467)
T ss_pred             HHHHHHHHhccCC--------CCCceeeecchhhhccchhHHHHHHHhhcccCCCCCCceeeeeccC
Confidence            9999986554222        3567999999999999999999987666544466666777776555

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.55  E-value=1.2e-15  Score=165.95  Aligned_cols=169  Identities=18%  Similarity=0.348  Sum_probs=128.4

Q ss_pred             CcccccccCcccccccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccC-----
Q 007898           91 NRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHG-----  165 (585)
Q Consensus        91 kpy~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htg-----  165 (585)
                      ....|.+|.+.|++...|+.|++.-+           +..+..|.|..|       .+.|..+..|.+||.+|..     
T Consensus       209 qlltcpycdrgykrltslkeHikyrh-----------ekne~nfsC~lC-------sytFAyRtQLErhm~~hkpg~dqa  270 (1007)
T KOG3623|consen  209 QLLTCPYCDRGYKRLTSLKEHIKYRH-----------EKNEPNFSCMLC-------SYTFAYRTQLERHMQLHKPGGDQA  270 (1007)
T ss_pred             hhhcchhHHHHHHHHHHHHHHHHHHH-----------hhCCCCCcchhh-------hhhhhhHHHHHHHHHhhcCCCccc
Confidence            35689999999999999999987643           125667999999       5999999999999998852     


Q ss_pred             --------CccccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCChHHHHHHHH--HhhhccccccccccCCCC
Q 007898          166 --------EKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRA--FCDALAEESTRAITGTNP  233 (585)
Q Consensus       166 --------ekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~~--~h~~~~~~~~r~ht~ekp  233 (585)
                              .|.|+|.+|||.|+.+.+|+.|+|+ .|||||.|+ |+|+|....++..|+.  .|-.+.....|..++-|.
T Consensus       271 ~sltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGSySSHmSSKKCIsli~vngr~R~~lKt  350 (1007)
T KOG3623|consen  271 ISLTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGSYSSHMSSKKCISLILVNGRNRALLKT  350 (1007)
T ss_pred             ccccchhhhccccccccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCcccccccccchhhhhcccCcchhhhhh
Confidence                    4779999999999999999999999 699999999 9999999999999984  455555555666666666


Q ss_pred             ccCCCCCCCCCcCCCcccccccccCCCCCCcccccccchhhhhc
Q 007898          234 ILSSSSHHQPGIVAGASSHVNLQIPQFNPQDFSAFSLKKEQQSY  277 (585)
Q Consensus       234 ~~cs~c~~sf~~~s~l~sH~~~~~~~~~~~~~~~~~~k~eqq~~  277 (585)
                      ..|+.-..+.+.....+.+.+..........+...+|+.+...+
T Consensus       351 ~~~Sp~saSsSp~~s~~pq~r~klen~~slql~~~qistepsda  394 (1007)
T KOG3623|consen  351 LEKSPGSASSSPRRSPSPQGRGKLENQPSLQLLPHQISTEPSDA  394 (1007)
T ss_pred             cccCCcccCCCCCCCCChhHhhhccCchhhccCCcccccccchh
Confidence            66666555555555555555543333222334445566666544

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.50  E-value=2e-15  Score=142.90  Aligned_cols=122  Identities=19%  Similarity=0.334  Sum_probs=110.9

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCCh
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRR  207 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~  207 (585)
                      +...|.|.+|+       |.|....-|.+|++.|...|.|-|..|||.|...-+|++|+|+ +|.+||+|. |+|.|..+
T Consensus       114 d~d~ftCrvCg-------K~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqr  186 (267)
T KOG3576|consen  114 DQDSFTCRVCG-------KKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQR  186 (267)
T ss_pred             CCCeeeeehhh-------hhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhh
Confidence            56789999996       9999999999999999999999999999999999999999999 799999999 99999999


Q ss_pred             HHHHHHHHHhhhccccccccccCCCCccCCCCCCCCCcCCCcccccccccC
Q 007898          208 DSFITHRAFCDALAEESTRAITGTNPILSSSSHHQPGIVAGASSHVNLQIP  258 (585)
Q Consensus       208 s~L~~H~~~h~~~~~~~~r~ht~ekp~~cs~c~~sf~~~s~l~sH~~~~~~  258 (585)
                      -+|..|.+..|+.....+-....+|.|.|+.|+..-.....+-.|++.+++
T Consensus       187 csleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp  237 (267)
T KOG3576|consen  187 CSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHP  237 (267)
T ss_pred             ccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCChhHHHHHHHhcCC
Confidence            999999988887776666555668999999999998888888888887764

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.37  E-value=1.6e-13  Score=149.61  Aligned_cols=104  Identities=25%  Similarity=0.518  Sum_probs=93.5

Q ss_pred             ccccCCCCcccCCCCCccCChhhhhhhhcccc--CCccccccccCCcccChhHHHHHHHHhC--------------Ccce
Q 007898          133 VYVCPEPNCVHHDPSRALGDLTGIKKHFCRKH--GEKKWKCDKCSKRYAVQSDWKAHSKTCG--------------TREY  196 (585)
Q Consensus       133 ~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Ht--gekpy~C~~CgK~F~~~s~L~~H~r~hg--------------ekpy  196 (585)
                      ...|++|.       +.+.+...|+.|++.-+  .+..|.|..|..+|..+..|.+|+.+|.              -|.|
T Consensus       210 lltcpycd-------rgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKF  282 (1007)
T KOG3623|consen  210 LLTCPYCD-------RGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKF  282 (1007)
T ss_pred             hhcchhHH-------HHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccc
Confidence            46899995       99999999999987533  3456999999999999999999999852              2679


Q ss_pred             ecC-CCCccCChHHHHHHHHHhhhccccccccccCCCCccCCCCCCCCCcCCCcccccc
Q 007898          197 RCD-CGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSSSSHHQPGIVAGASSHVN  254 (585)
Q Consensus       197 ~C~-Cgk~F~~~s~L~~H~~~h~~~~~~~~r~ht~ekp~~cs~c~~sf~~~s~l~sH~~  254 (585)
                      +|. |+|.|+++..|+.|+           |+|+|||||.|..|.+.|+...++++||.
T Consensus       283 KCtECgKAFKfKHHLKEHl-----------RIHSGEKPfeCpnCkKRFSHSGSySSHmS  330 (1007)
T KOG3623|consen  283 KCTECGKAFKFKHHLKEHL-----------RIHSGEKPFECPNCKKRFSHSGSYSSHMS  330 (1007)
T ss_pred             cccccchhhhhHHHHHhhh-----------eeecCCCCcCCcccccccccCCccccccc
Confidence            999 999999999999999           89999999999999999999999999974

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=99.28  E-value=4.9e-13  Score=135.77  Aligned_cols=138  Identities=20%  Similarity=0.342  Sum_probs=75.0

Q ss_pred             ccc--cccCcccccccccchhcccccCccccccchhhhccccccccCCCCccc-----------------------CCCC
Q 007898           93 FVC--EICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVH-----------------------HDPS  147 (585)
Q Consensus        93 y~C--~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~-----------------------~~~~  147 (585)
                      +.|  ..|-+.|..++.|++|+|.|+             ++|...|+.||..|                       ..|.
T Consensus       178 ~~C~W~~Ct~~~~~k~~LreH~r~Hs-------------~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~  244 (467)
T KOG3608|consen  178 TMCNWAMCTKHMGNKYRLREHIRTHS-------------NEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCF  244 (467)
T ss_pred             eeccchhhhhhhccHHHHHHHHHhcC-------------CCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHH
Confidence            445  569999999999999999998             55555555553000                       0002


Q ss_pred             CccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHH-h-CCcceecC-CCCccCChHHHHHHHHHhhhccccc
Q 007898          148 RALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-C-GTREYRCD-CGTLFSRRDSFITHRAFCDALAEES  224 (585)
Q Consensus       148 k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-h-gekpy~C~-Cgk~F~~~s~L~~H~~~h~~~~~~~  224 (585)
                      |.|.....|+.|++.|.  .-|+|+.|+......+.|.+|++. | ..|||+|+ |.+.|.+.+.|.+|..         
T Consensus       245 KrFaTeklL~~Hv~rHv--n~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~---------  313 (467)
T KOG3608|consen  245 KRFATEKLLKSHVVRHV--NCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQ---------  313 (467)
T ss_pred             HHHhHHHHHHHHHHHhh--hcccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHH---------
Confidence            44444444444444442  235555555555555555555555 3 34555555 5555555555555552         


Q ss_pred             cccccCCCCccCCC--CCCCCCcCCCccccccccc
Q 007898          225 TRAITGTNPILSSS--SHHQPGIVAGASSHVNLQI  257 (585)
Q Consensus       225 ~r~ht~ekp~~cs~--c~~sf~~~s~l~sH~~~~~  257 (585)
                        +|+ +..|.|..  |..++.....+++|++-++
T Consensus       314 --~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evh  345 (467)
T KOG3608|consen  314 --VHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVH  345 (467)
T ss_pred             --hcc-ccceecCCCCCcHHHHHHHHHHHHHHHhc
Confidence              222 33455544  5555555555555554444

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.10  E-value=8.5e-11  Score=129.70  Aligned_cols=103  Identities=21%  Similarity=0.446  Sum_probs=55.8

Q ss_pred             cCcccccccCcccccccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccc
Q 007898           90 TNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKW  169 (585)
Q Consensus        90 ~kpy~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy  169 (585)
                      ++.+.|+.|++.|. ...|..|+++|+               ++|.|+ ||       +.+ .+..|..|+++|..+|++
T Consensus       451 ~~H~~C~~Cgk~f~-~s~LekH~~~~H---------------kpv~Cp-Cg-------~~~-~R~~L~~H~~thCp~Kpi  505 (567)
T PLN03086        451 KNHVHCEKCGQAFQ-QGEMEKHMKVFH---------------EPLQCP-CG-------VVL-EKEQMVQHQASTCPLRLI  505 (567)
T ss_pred             ccCccCCCCCCccc-hHHHHHHHHhcC---------------CCccCC-CC-------CCc-chhHHHhhhhccCCCCce
Confidence            34455666666553 344555555542               455665 53       333 345566666666666666


Q ss_pred             cccccCCcccC----------hhHHHHHHHHhCCcceecC-CCCccCChHHHHHHHHHhh
Q 007898          170 KCDKCSKRYAV----------QSDWKAHSKTCGTREYRCD-CGTLFSRRDSFITHRAFCD  218 (585)
Q Consensus       170 ~C~~CgK~F~~----------~s~L~~H~r~hgekpy~C~-Cgk~F~~~s~L~~H~~~h~  218 (585)
                      .|.+|++.|..          ...|..|..++|.+++.|. |++.|..+ .|..|+..+|
T Consensus       506 ~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vrlr-dm~~H~~~~h  564 (567)
T PLN03086        506 TCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSVMLK-EMDIHQIAVH  564 (567)
T ss_pred             eCCCCCCccccCccccchhhhhhhHHHHHHhcCCcceEccccCCeeeeh-hHHHHHHHhh
Confidence            66666665531          2355666555666666666 66655444 3455554444

>PHA00733 hypothetical protein

Probab=98.83  E-value=2.9e-09  Score=97.17  Aligned_cols=83  Identities=14%  Similarity=0.267  Sum_probs=67.1

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhh--h---ccccCCccccccccCCcccChhHHHHHHHHhCCcceecC-CCCc
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKH--F---CRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTL  203 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H--~---r~Htgekpy~C~~CgK~F~~~s~L~~H~r~hgekpy~C~-Cgk~  203 (585)
                      ..|.+.|.+|.       +.|.....|..|  +   ..++++++|.|+.|++.|.....|..|++++ +++|.|. |++.
T Consensus        37 ~~~~~~~~~~~-------~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h-~~~~~C~~CgK~  108 (128)
T PHA00733         37 EQKRLIRAVVK-------TLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT-EHSKVCPVCGKE  108 (128)
T ss_pred             hhhhHHHHHHh-------hhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC-CcCccCCCCCCc
Confidence            56889999994       566665555444  1   2334589999999999999999999999876 5689999 9999


Q ss_pred             cCChHHHHHHHHHhhhc
Q 007898          204 FSRRDSFITHRAFCDAL  220 (585)
Q Consensus       204 F~~~s~L~~H~~~h~~~  220 (585)
                      |.....|.+|+...|++
T Consensus       109 F~~~~sL~~H~~~~h~~  125 (128)
T PHA00733        109 FRNTDSTLDHVCKKHNI  125 (128)
T ss_pred             cCCHHHHHHHHHHhcCc
Confidence            99999999999776654

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.81  E-value=5.1e-09  Score=115.80  Aligned_cols=129  Identities=18%  Similarity=0.303  Sum_probs=96.7

Q ss_pred             cccccccCcccccccccchhcccccC-----c-cccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccC
Q 007898           92 RFVCEICNKGFQRDQNLQLHRRGHNL-----P-WKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHG  165 (585)
Q Consensus        92 py~C~~Cgk~F~~~~~L~~H~r~H~~-----~-~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htg  165 (585)
                      .-.|..|.+.... .+|..|......     + ..|.........++.+.|+.|+       +.|. ...|..|+++|+ 
T Consensus       407 ~V~C~NC~~~i~l-~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~Cg-------k~f~-~s~LekH~~~~H-  476 (567)
T PLN03086        407 TVECRNCKHYIPS-RSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKCG-------QAFQ-QGEMEKHMKVFH-  476 (567)
T ss_pred             eEECCCCCCccch-hHHHHHHhhCCCcceeCCcccccceeeccccccCccCCCCC-------Cccc-hHHHHHHHHhcC-
Confidence            3468889876654 556677654321     1 1244444444567788999996       7885 678999999986 


Q ss_pred             CccccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCC----------hHHHHHHHHHhhhccccccccccCCCC
Q 007898          166 EKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSR----------RDSFITHRAFCDALAEESTRAITGTNP  233 (585)
Q Consensus       166 ekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~----------~s~L~~H~~~h~~~~~~~~r~ht~ekp  233 (585)
                       ++|.|. ||+.| .+..|..|+++ +.+|++.|. |++.|..          ...|..|...            ++.++
T Consensus       477 -kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~------------CG~rt  541 (567)
T PLN03086        477 -EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESI------------CGSRT  541 (567)
T ss_pred             -CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHh------------cCCcc
Confidence             889999 99865 67999999998 899999999 9999952          3478888733            47899


Q ss_pred             ccCCCCCCCCCc
Q 007898          234 ILSSSSHHQPGI  245 (585)
Q Consensus       234 ~~cs~c~~sf~~  245 (585)
                      +.|..|++.+..
T Consensus       542 ~~C~~Cgk~Vrl  553 (567)
T PLN03086        542 APCDSCGRSVML  553 (567)
T ss_pred             eEccccCCeeee
Confidence            999999986543

>PHA00733 hypothetical protein

Probab=98.77  E-value=5.2e-09  Score=95.49  Aligned_cols=87  Identities=16%  Similarity=0.168  Sum_probs=71.6

Q ss_pred             ccccCcccccccCcccccccccchh--cccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhcccc
Q 007898           87 LMATNRFVCEICNKGFQRDQNLQLH--RRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKH  164 (585)
Q Consensus        87 ~~~~kpy~C~~Cgk~F~~~~~L~~H--~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Ht  164 (585)
                      ....++++|.+|.+.|.....|..|  ++.|.          .+...++|.|+.||       +.|.....|..|++.| 
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~----------~~~~~kPy~C~~Cg-------k~Fss~s~L~~H~r~h-   96 (128)
T PHA00733         35 TPEQKRLIRAVVKTLIYNPQLLDESSYLYKLL----------TSKAVSPYVCPLCL-------MPFSSSVSLKQHIRYT-   96 (128)
T ss_pred             ChhhhhHHHHHHhhhccChhhhcchHHHHhhc----------ccCCCCCccCCCCC-------CcCCCHHHHHHHHhcC-
Confidence            3447899999999999988777766  22221          11167899999996       9999999999999987 


Q ss_pred             CCccccccccCCcccChhHHHHHHHH-hC
Q 007898          165 GEKKWKCDKCSKRYAVQSDWKAHSKT-CG  192 (585)
Q Consensus       165 gekpy~C~~CgK~F~~~s~L~~H~r~-hg  192 (585)
                       +++|.|.+|++.|.....|.+|+.. |+
T Consensus        97 -~~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         97 -EHSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             -CcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence             4679999999999999999999988 75

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.59  E-value=7.7e-09  Score=107.90  Aligned_cols=147  Identities=18%  Similarity=0.243  Sum_probs=97.3

Q ss_pred             cccccccCcccccccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCC-----
Q 007898           92 RFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGE-----  166 (585)
Q Consensus        92 py~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htge-----  166 (585)
                      -|.|..|...|.+...|-.|.-.-.             -..-|+|++|+       |.|....+|..|.|+|.-.     
T Consensus       267 dyiCqLCK~kYeD~F~LAQHrC~RI-------------V~vEYrCPEC~-------KVFsCPANLASHRRWHKPR~eaa~  326 (500)
T KOG3993|consen  267 DYICQLCKEKYEDAFALAQHRCPRI-------------VHVEYRCPECD-------KVFSCPANLASHRRWHKPRPEAAK  326 (500)
T ss_pred             HHHHHHHHHhhhhHHHHhhccCCee-------------EEeeecCCccc-------ccccCchhhhhhhcccCCchhhhh
Confidence            5999999999999999999964322             34579999995       9999999999999998521     


Q ss_pred             ----------------------------ccccccccCCcccChhHHHHHHHHhCCc------------------ceecC-
Q 007898          167 ----------------------------KKWKCDKCSKRYAVQSDWKAHSKTCGTR------------------EYRCD-  199 (585)
Q Consensus       167 ----------------------------kpy~C~~CgK~F~~~s~L~~H~r~hgek------------------py~C~-  199 (585)
                                                  -.|.|.+|+|.|.+...|+.|+.+|...                  -+-|. 
T Consensus       327 a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~  406 (500)
T KOG3993|consen  327 AGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQA  406 (500)
T ss_pred             cCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccc
Confidence                                        1277888888888888888887663111                  02233 


Q ss_pred             CCCccCChHHHHHHHHHhhhcc------------------ccccccccCCCCccCCCCCCCCCcCCCcccccccccC
Q 007898          200 CGTLFSRRDSFITHRAFCDALA------------------EESTRAITGTNPILSSSSHHQPGIVAGASSHVNLQIP  258 (585)
Q Consensus       200 Cgk~F~~~s~L~~H~~~h~~~~------------------~~~~r~ht~ekp~~cs~c~~sf~~~s~l~sH~~~~~~  258 (585)
                      |.-.|...+.--.|...+-+..                  ....|.-..+.-|.|.+|...|...-++.+|++..++
T Consensus       407 ~a~h~~a~~~~g~~vl~~a~sael~~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hp  483 (500)
T KOG3993|consen  407 VATHSSASDSHGDEVLYVAGSAELELPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHP  483 (500)
T ss_pred             cccccccccccccceeeeeccccccCCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcCh
Confidence            4333333222222221111000                  1112222335568999999999999999999987764

>PHA02768 hypothetical protein; Provisional

Probab=98.54  E-value=2.7e-08  Score=76.34  Aligned_cols=42  Identities=17%  Similarity=0.475  Sum_probs=25.7

Q ss_pred             ccccccCCcccChhHHHHHHHHhCCcceecC-CCCccCChHHHH
Q 007898          169 WKCDKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSRRDSFI  211 (585)
Q Consensus       169 y~C~~CgK~F~~~s~L~~H~r~hgekpy~C~-Cgk~F~~~s~L~  211 (585)
                      |+|++|||.|...++|..|+++|. ++|+|. |+|.|.+.+.|+
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r~H~-k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLRKHN-TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHHhcC-CcccCCcccceecccceeE
Confidence            566666666666666666666644 566666 666666555543

>PHA02768 hypothetical protein; Provisional

Probab=98.34  E-value=1.4e-07  Score=72.43  Aligned_cols=44  Identities=14%  Similarity=0.275  Sum_probs=40.1

Q ss_pred             ccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHH
Q 007898          133 VYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWK  185 (585)
Q Consensus       133 ~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~  185 (585)
                      -|+|++||       +.|....+|..|+++|+  ++|+|..|+|.|...+.|.
T Consensus         5 ~y~C~~CG-------K~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICG-------EIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhC-------CeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence            48999996       99999999999999998  7999999999999877664

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=98.27  E-value=9.2e-08  Score=100.03  Aligned_cols=138  Identities=17%  Similarity=0.238  Sum_probs=97.0

Q ss_pred             CchhhccCcccccccCcccccccCcccccccccchhcccccCccccc--------c------------chhhhccccccc
Q 007898           76 DAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLK--------Q------------RTSKEIRKKVYV  135 (585)
Q Consensus        76 ~~~~~~~~~k~~~~~kpy~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~--------~------------~~~~~~~~k~y~  135 (585)
                      +...+..|.-...-..-|+|++|+|+|....+|-.|+|.|.-.....        .            +......+..|.
T Consensus       279 D~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~  358 (500)
T KOG3993|consen  279 DAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFS  358 (500)
T ss_pred             hHHHHhhccCCeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceee
Confidence            33334444333333456999999999999999999999996111100        0            000112345799


Q ss_pred             cCCCCcccCCCCCccCChhhhhhhhccccCC----------------------------------------------ccc
Q 007898          136 CPEPNCVHHDPSRALGDLTGIKKHFCRKHGE----------------------------------------------KKW  169 (585)
Q Consensus       136 C~~CgC~~~~~~k~F~~~~~L~~H~r~Htge----------------------------------------------kpy  169 (585)
                      |.+|+       |.|.+...|++|..+|...                                              ...
T Consensus       359 C~~C~-------KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~sael~  431 (500)
T KOG3993|consen  359 CHTCG-------KKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVAGSAELE  431 (500)
T ss_pred             cHHhh-------hhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeeecccccc
Confidence            99996       9999999999998777531                                              013


Q ss_pred             cccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCChHHHHHHHHHhhhc
Q 007898          170 KCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDAL  220 (585)
Q Consensus       170 ~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~~~h~~~  220 (585)
                      .|++|+-.+..+..--.|.+. +.+.-|.|+ |.-+|-....|.+|...+|..
T Consensus       432 ~pp~~~~ppsss~~sgg~~rlg~~~q~f~~ky~~atfyss~~ltrhin~~Hps  484 (500)
T KOG3993|consen  432 LPPYDGSPPSSSGSSGGYGRLGIAEQGFTCKYCPATFYSSPGLTRHINKCHPS  484 (500)
T ss_pred             CCCCCCCCcccCCCCCccccccchhhccccccchHhhhcCcchHhHhhhcChH
Confidence            467777777766666666666 667789999 999999999999999777643

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.16  E-value=5.1e-07  Score=59.14  Aligned_cols=26  Identities=31%  Similarity=0.792  Sum_probs=21.3

Q ss_pred             hhhhhhccccCCccccccccCCcccC
Q 007898          155 GIKKHFCRKHGEKKWKCDKCSKRYAV  180 (585)
Q Consensus       155 ~L~~H~r~Htgekpy~C~~CgK~F~~  180 (585)
                      +|.+|+++|+++|+|+|++|+|.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            47788888888888888888888863

...

>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []

Probab=97.74  E-value=1.7e-05  Score=57.64  Aligned_cols=26  Identities=31%  Similarity=0.302  Sum_probs=19.9

Q ss_pred             cccChHHHHHHHHHHHHhhccccccC
Q 007898            4 GLIFHQQQQQQQQVLEENMSNLTSQS   29 (585)
Q Consensus         4 q~ld~qQqQlyqqVmlEn~~nL~S~~   29 (585)
                      ++|++.||.+|++||+|||++++|++
T Consensus        16 ~~L~~~Qk~ly~dvm~Eny~~l~slG   41 (41)
T PF01352_consen   16 ELLDPAQKNLYRDVMLENYRNLVSLG   41 (41)
T ss_dssp             HTS-HHHHHHHHHHHHHTTTS---S-
T ss_pred             ccccceecccchhHHHHhhcccEecC
Confidence            47999999999999999999999983

It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.67  E-value=1e-05  Score=82.15  Aligned_cols=49  Identities=31%  Similarity=0.670  Sum_probs=27.7

Q ss_pred             Cccccccc--cCCcccChhHHHHHHHH-h-------------------CCcceecC-CCCccCChHHHHHHH
Q 007898          166 EKKWKCDK--CSKRYAVQSDWKAHSKT-C-------------------GTREYRCD-CGTLFSRRDSFITHR  214 (585)
Q Consensus       166 ekpy~C~~--CgK~F~~~s~L~~H~r~-h-------------------gekpy~C~-Cgk~F~~~s~L~~H~  214 (585)
                      +|||+|++  |.|.|+....|+.|+.- |                   ..|||+|+ |+|+|+...-|+.|+
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr  418 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHR  418 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecc
Confidence            36666655  66666666666666554 3                   12555555 555555555555554

>PHA00616 hypothetical protein

Probab=97.65  E-value=2e-05  Score=57.80  Aligned_cols=31  Identities=10%  Similarity=0.324  Sum_probs=14.4

Q ss_pred             ccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          169 WKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       169 y~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      |+|..||+.|..++.|..|++. |+++++.|+
T Consensus         2 YqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~   33 (44)
T PHA00616          2 YQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLE   33 (44)
T ss_pred             CccchhhHHHhhHHHHHHHHHHhcCCCcccee
Confidence            4444444444444444444444 444444443

>PHA00732 hypothetical protein

Probab=97.63  E-value=2.9e-05  Score=64.87  Aligned_cols=45  Identities=27%  Similarity=0.423  Sum_probs=30.9

Q ss_pred             ccccCCCCcccCCCCCccCChhhhhhhhcc-ccCCccccccccCCcccChhHHHHHHHH
Q 007898          133 VYVCPEPNCVHHDPSRALGDLTGIKKHFCR-KHGEKKWKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       133 ~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~-Htgekpy~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      +|.|+.|+       +.|.....|+.|++. |.+   +.|++|++.|.   .|..|.++
T Consensus         1 py~C~~Cg-------k~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF~---~l~~H~~~   46 (79)
T PHA00732          1 MFKCPICG-------FTTVTLFALKQHARRNHTL---TKCPVCNKSYR---RLNQHFYS   46 (79)
T ss_pred             CccCCCCC-------CccCCHHHHHHHhhcccCC---CccCCCCCEeC---Chhhhhcc
Confidence            46777774       777777777777764 442   46777777776   46677655

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=97.62  E-value=3.3e-05  Score=50.54  Aligned_cols=24  Identities=38%  Similarity=0.951  Sum_probs=20.0

Q ss_pred             HHHHHHHH-hCCcceecC-CCCccCC
Q 007898          183 DWKAHSKT-CGTREYRCD-CGTLFSR  206 (585)
Q Consensus       183 ~L~~H~r~-hgekpy~C~-Cgk~F~~  206 (585)
                      +|.+|+++ +++|||.|+ |++.|.+
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence            47889988 688999999 9988863

...

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.58  E-value=1.5e-05  Score=80.83  Aligned_cols=56  Identities=32%  Similarity=0.697  Sum_probs=48.4

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhcccc-------------------CCccccccccCCcccChhHHHHHHHH
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKH-------------------GEKKWKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Ht-------------------gekpy~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      ++|||+|++-||     .|.|+....|+.|+..-+                   .+|||+|++|+|+|+....|+.|+.-
T Consensus       346 d~KpykCpV~gC-----~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~H  420 (423)
T COG5189         346 DGKPYKCPVEGC-----NKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRKH  420 (423)
T ss_pred             cCceecCCCCCc-----hhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceecccc
Confidence            569999999987     799999999999986422                   35899999999999999999999654

>PHA00616 hypothetical protein

Probab=97.46  E-value=3.1e-05  Score=56.80  Aligned_cols=40  Identities=13%  Similarity=0.214  Sum_probs=34.9

Q ss_pred             ccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCccc
Q 007898          133 VYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYA  179 (585)
Q Consensus       133 ~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~  179 (585)
                      +|+|+.||       +.|..+..|.+|++.|+|++++.|+.--..|.
T Consensus         1 pYqC~~CG-------~~F~~~s~l~~H~r~~hg~~~~~~~~~y~~f~   40 (44)
T PHA00616          1 MYQCLRCG-------GIFRKKKEVIEHLLSVHKQNKLTLEYFYIYFR   40 (44)
T ss_pred             CCccchhh-------HHHhhHHHHHHHHHHhcCCCccceeEEEEEEE
Confidence            68999996       99999999999999999999999987544443

>PHA00732 hypothetical protein

Probab=97.37  E-value=0.0001  Score=61.60  Aligned_cols=44  Identities=18%  Similarity=0.349  Sum_probs=38.1

Q ss_pred             cccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCChHHHHHHHHH
Q 007898          168 KWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAF  216 (585)
Q Consensus       168 py~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~~~  216 (585)
                      ||.|+.|++.|.....|..|++. |.  ++.|+ |++.|.   .|..|.+.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~--~~~C~~CgKsF~---~l~~H~~~   46 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT--LTKCPVCNKSYR---RLNQHFYS   46 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC--CCccCCCCCEeC---Chhhhhcc
Confidence            58999999999999999999986 64  46899 999998   47889844

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=97.22  E-value=0.00042  Score=53.55  Aligned_cols=47  Identities=21%  Similarity=0.447  Sum_probs=24.4

Q ss_pred             ccccccCCcccChhHHHHHHHH-hC--CcceecC-CCCccCChHHHHHHHHHhh
Q 007898          169 WKCDKCSKRYAVQSDWKAHSKT-CG--TREYRCD-CGTLFSRRDSFITHRAFCD  218 (585)
Q Consensus       169 y~C~~CgK~F~~~s~L~~H~r~-hg--ekpy~C~-Cgk~F~~~s~L~~H~~~h~  218 (585)
                      |.|++|++ ......|..|... |.  .+.+.|+ |...+.  ..|..|+..+|
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            55666666 3334556666555 42  2445666 655443  25666655443

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=97.11  E-value=0.00083  Score=79.78  Aligned_cols=25  Identities=28%  Similarity=0.527  Sum_probs=20.6

Q ss_pred             cCcccccccCcccccccccchhccc
Q 007898           90 TNRFVCEICNKGFQRDQNLQLHRRG  114 (585)
Q Consensus        90 ~kpy~C~~Cgk~F~~~~~L~~H~r~  114 (585)
                      .|.|+|+.|+..|+....|..|+|.
T Consensus       463 ~kt~~cpkc~~~yk~a~~L~vhmRs  487 (1406)
T KOG1146|consen  463 FKTLKCPKCNWHYKLAQTLGVHMRS  487 (1406)
T ss_pred             cccccCCccchhhhhHHHhhhcccc
Confidence            4778888888888888888888876

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=96.92  E-value=0.0008  Score=51.96  Aligned_cols=50  Identities=22%  Similarity=0.371  Sum_probs=38.9

Q ss_pred             ccccCCCCcccCCCCCccCChhhhhhhhcccc-CC-ccccccccCCcccChhHHHHHHHH-hC
Q 007898          133 VYVCPEPNCVHHDPSRALGDLTGIKKHFCRKH-GE-KKWKCDKCSKRYAVQSDWKAHSKT-CG  192 (585)
Q Consensus       133 ~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Ht-ge-kpy~C~~CgK~F~~~s~L~~H~r~-hg  192 (585)
                      .|.|++|+       + ..+...|..|....+ .+ +.+.|++|...+.  .+|..|++. |+
T Consensus         2 ~f~CP~C~-------~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    2 SFTCPYCG-------K-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             CcCCCCCC-------C-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence            58999996       6 455688999987644 33 5799999998755  499999987 63

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.89  E-value=0.00068  Score=42.61  Aligned_cols=21  Identities=33%  Similarity=0.804  Sum_probs=12.4

Q ss_pred             eecC-CCCccCChHHHHHHHHH
Q 007898          196 YRCD-CGTLFSRRDSFITHRAF  216 (585)
Q Consensus       196 y~C~-Cgk~F~~~s~L~~H~~~  216 (585)
                      |.|+ |++.|..+..|.+|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            4565 66666666666666544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.83  E-value=0.00073  Score=57.85  Aligned_cols=72  Identities=18%  Similarity=0.454  Sum_probs=16.2

Q ss_pred             cccccCcccccccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898           94 VCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus        94 ~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      +|..|+..|.....|..|+...+             +-.   .+..        ..+.....+..+++... ...|.|.+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H-------------~~~---~~~~--------~~l~~~~~~~~~~~~~~-~~~~~C~~   55 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKH-------------GFD---IPDQ--------KYLVDPNRLLNYLRKKV-KESFRCPY   55 (100)
T ss_dssp             -------------------------------------------------------------------------SSEEBSS
T ss_pred             Ccccccccccccccccccccccc-------------ccc---cccc--------ccccccccccccccccc-CCCCCCCc
Confidence            47778888888888888875443             110   0000        11222223333332211 22577777


Q ss_pred             cCCcccChhHHHHHHHH
Q 007898          174 CSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       174 CgK~F~~~s~L~~H~r~  190 (585)
                      |++.|.....|..|++.
T Consensus        56 C~~~f~s~~~l~~Hm~~   72 (100)
T PF12756_consen   56 CNKTFRSREALQEHMRS   72 (100)
T ss_dssp             SS-EESSHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHcC
Confidence            77777777777777776

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.70  E-value=0.00086  Score=42.14  Aligned_cols=22  Identities=32%  Similarity=0.773  Sum_probs=16.2

Q ss_pred             ccccccCCcccChhHHHHHHHH
Q 007898          169 WKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       169 y~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      |+|++|++.|..+..|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            5677777777777777777764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=96.40  E-value=0.0023  Score=68.30  Aligned_cols=137  Identities=15%  Similarity=0.156  Sum_probs=100.1

Q ss_pred             CcccccccCcccccccccchhcc--cccCccccccchhhhccc--cccccC--CCCcccCCCCCccCChhhhhhhhcccc
Q 007898           91 NRFVCEICNKGFQRDQNLQLHRR--GHNLPWKLKQRTSKEIRK--KVYVCP--EPNCVHHDPSRALGDLTGIKKHFCRKH  164 (585)
Q Consensus        91 kpy~C~~Cgk~F~~~~~L~~H~r--~H~~~~~~~~~~~~~~~~--k~y~C~--~CgC~~~~~~k~F~~~~~L~~H~r~Ht  164 (585)
                      .++.|..|.+.|.....|.+|.+  .|.             .+  +++.|+  .|+       +.|.+...+..|...|.
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~-------------~~~~~~~~~p~~~~~-------~~~~~~~~~~~~~~~~~  347 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHS-------------GESLKPFSCPYSLCG-------KLFSRNDALKRHILLHT  347 (467)
T ss_pred             cCCCCccccCCccccccccccccccccc-------------cccCCceeeeccCCC-------ccccccccccCCccccc
Confidence            57999999999999999999999  677             77  899999  685       99999999999999999


Q ss_pred             CCccccccc--cCCcccChhHH----HHHHH-H-hCCcceecC---CCCccCChHHHHHHHHHhhhccccccccccCCCC
Q 007898          165 GEKKWKCDK--CSKRYAVQSDW----KAHSK-T-CGTREYRCD---CGTLFSRRDSFITHRAFCDALAEESTRAITGTNP  233 (585)
Q Consensus       165 gekpy~C~~--CgK~F~~~s~L----~~H~r-~-hgekpy~C~---Cgk~F~~~s~L~~H~~~h~~~~~~~~r~ht~ekp  233 (585)
                      +.++++|..  |.+.+.....-    ..+.+ . +..+.+.|.   |-+.+.....+..|...|-.         -....
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~  418 (467)
T COG5048         348 SISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLS---------FRPYN  418 (467)
T ss_pred             CCCccccccccCccccccccCCCCccchhhccCccCCccccccccchhhhhccccccccccccccc---------cCCcC
Confidence            988888755  55655544431    11112 2 455667775   77888887777777632211         12335


Q ss_pred             ccCCCCCCCCCcCCCcccccccc
Q 007898          234 ILSSSSHHQPGIVAGASSHVNLQ  256 (585)
Q Consensus       234 ~~cs~c~~sf~~~s~l~sH~~~~  256 (585)
                      +.+..|...+.....+..|.+.+
T Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~  441 (467)
T COG5048         419 CKNPPCSKSFNRHYNLIPHKKIH  441 (467)
T ss_pred             CCCCcchhhccCccccccccccc
Confidence            66778888888888777776654

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.39  E-value=0.0027  Score=39.71  Aligned_cols=22  Identities=23%  Similarity=0.656  Sum_probs=11.0

Q ss_pred             eecC-CCCccCChHHHHHHHHHh
Q 007898          196 YRCD-CGTLFSRRDSFITHRAFC  217 (585)
Q Consensus       196 y~C~-Cgk~F~~~s~L~~H~~~h  217 (585)
                      |.|+ |++.|..+..|+.|++.|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            4555 555555555555555444

...

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.35  E-value=0.0024  Score=54.60  Aligned_cols=73  Identities=16%  Similarity=0.253  Sum_probs=21.2

Q ss_pred             ccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHHhCCcceecC-CCCccCChHHHHHH
Q 007898          135 VCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSRRDSFITH  213 (585)
Q Consensus       135 ~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~hgekpy~C~-Cgk~F~~~s~L~~H  213 (585)
                      +|.+|+       ..|.....|..|+...++-..-    ..+.+.....+..+.+..-...+.|. |++.|.....|..|
T Consensus         1 ~C~~C~-------~~f~~~~~l~~H~~~~H~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~H   69 (100)
T PF12756_consen    1 QCLFCD-------ESFSSVDDLLQHMKKKHGFDIP----DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEH   69 (100)
T ss_dssp             -----------------------------------------------------------SSEEBSSSS-EESSHHHHHHH
T ss_pred             Cccccc-------cccccccccccccccccccccc----cccccccccccccccccccCCCCCCCccCCCCcCHHHHHHH
Confidence            488885       8899999999999876653221    11222244444444444233479999 99999999999999


Q ss_pred             HHHhh
Q 007898          214 RAFCD  218 (585)
Q Consensus       214 ~~~h~  218 (585)
                      ++.+.
T Consensus        70 m~~~~   74 (100)
T PF12756_consen   70 MRSKH   74 (100)
T ss_dssp             HHHTT
T ss_pred             HcCcc
Confidence            98643

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.20  E-value=0.0021  Score=42.01  Aligned_cols=23  Identities=30%  Similarity=0.725  Sum_probs=14.2

Q ss_pred             ceecC-CCCccCChHHHHHHHHHh
Q 007898          195 EYRCD-CGTLFSRRDSFITHRAFC  217 (585)
Q Consensus       195 py~C~-Cgk~F~~~s~L~~H~~~h  217 (585)
                      +|.|+ |++.|.....|..|++.|
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h   24 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSH   24 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHh
Confidence            45666 666666666666666444

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.02  E-value=0.0041  Score=38.84  Aligned_cols=22  Identities=27%  Similarity=0.761  Sum_probs=15.1

Q ss_pred             ccccccCCcccChhHHHHHHHH
Q 007898          169 WKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       169 y~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      |.|++|++.|.....|..|+++
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~   22 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRT   22 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHh
Confidence            5677777777777777777765

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=95.91  E-value=0.0021  Score=42.03  Aligned_cols=25  Identities=36%  Similarity=0.711  Sum_probs=23.5

Q ss_pred             cccccccCcccccccccchhccccc
Q 007898           92 RFVCEICNKGFQRDQNLQLHRRGHN  116 (585)
Q Consensus        92 py~C~~Cgk~F~~~~~L~~H~r~H~  116 (585)
                      +|+|.+|++.|.....|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            6899999999999999999999885

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.83  E-value=0.0058  Score=69.22  Aligned_cols=22  Identities=36%  Similarity=0.806  Sum_probs=15.2

Q ss_pred             cccccccCcccc---------------cccccchhcc
Q 007898           92 RFVCEICNKGFQ---------------RDQNLQLHRR  113 (585)
Q Consensus        92 py~C~~Cgk~F~---------------~~~~L~~H~r  113 (585)
                      .+.|.+|++.|.               ....|+.|++
T Consensus        99 ~~~C~~C~~~~~~~~~~~~~~~c~~~~s~~~Lk~H~~  135 (669)
T KOG2231|consen   99 HHSCHICDRRFRALYNKKECLHCTEFKSVENLKNHMR  135 (669)
T ss_pred             hhhcCccccchhhhcccCCCccccchhHHHHHHHHHH
Confidence            467888887773               5566777763

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.39  E-value=0.013  Score=44.28  Aligned_cols=31  Identities=13%  Similarity=0.224  Sum_probs=20.5

Q ss_pred             CCccccccccCCcccChhHHHHHHHH-hCCcc
Q 007898          165 GEKKWKCDKCSKRYAVQSDWKAHSKT-CGTRE  195 (585)
Q Consensus       165 gekpy~C~~CgK~F~~~s~L~~H~r~-hgekp  195 (585)
                      .+.|-.|++|+..+....+|++|+.+ |+.||
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            46778888888888888888888887 77765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=95.29  E-value=0.016  Score=61.92  Aligned_cols=132  Identities=19%  Similarity=0.251  Sum_probs=77.5

Q ss_pred             ccCCCCCCCCCCchhhccCcc--ccccc--Cccccc--ccCcccccccccchhcccccCccccccchhhhccccccccCC
Q 007898           65 KKRNLPGNPDPDAEVIALSPK--TLMAT--NRFVCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPE  138 (585)
Q Consensus        65 ~k~~~~~~~~~~~~~~~~~~k--~~~~~--kpy~C~--~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~  138 (585)
                      ..+..+.........+..+.+  .|.++  +++.|.  .|++.|.+...+..|...|.             ..+.+.|..
T Consensus       290 ~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~  356 (467)
T COG5048         290 IKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHT-------------SISPAKEKL  356 (467)
T ss_pred             CCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCccccc-------------CCCcccccc
Confidence            444555555556666677777  79999  999999  79999999999999999997             444455544


Q ss_pred             CCcccCCCCCccCChhh-----hhhhhccccCCccccccc--cCCcccChhHHHHHHHHh-CCc--ceecC-CCCccCCh
Q 007898          139 PNCVHHDPSRALGDLTG-----IKKHFCRKHGEKKWKCDK--CSKRYAVQSDWKAHSKTC-GTR--EYRCD-CGTLFSRR  207 (585)
Q Consensus       139 CgC~~~~~~k~F~~~~~-----L~~H~r~Htgekpy~C~~--CgK~F~~~s~L~~H~r~h-gek--py~C~-Cgk~F~~~  207 (585)
                      ..|     .+.+.....     ...........+.+.|..  |-+.+.....+..|...+ ..+  .+.|. |.+.|...
T Consensus       357 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (467)
T COG5048         357 LNS-----SSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRH  431 (467)
T ss_pred             ccC-----ccccccccCCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCc
Confidence            432     122222211     111111122233444433  555566666666555542 222  23334 66667666


Q ss_pred             HHHHHHH
Q 007898          208 DSFITHR  214 (585)
Q Consensus       208 s~L~~H~  214 (585)
                      ..+..|+
T Consensus       432 ~~~~~~~  438 (467)
T COG5048         432 YNLIPHK  438 (467)
T ss_pred             ccccccc
Confidence            6666666

>PRK04860 hypothetical protein; Provisional

Probab=94.88  E-value=0.0093  Score=56.58  Aligned_cols=36  Identities=28%  Similarity=0.755  Sum_probs=25.4

Q ss_pred             cccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCCh
Q 007898          168 KWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRR  207 (585)
Q Consensus       168 py~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~  207 (585)
                      +|.|. |++   ....+.+|.++ .++++|+|. |++.|...
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            57776 776   55667777777 577777777 77777654

>PRK04860 hypothetical protein; Provisional

Probab=94.76  E-value=0.014  Score=55.35  Aligned_cols=39  Identities=18%  Similarity=0.475  Sum_probs=31.0

Q ss_pred             cccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccCh
Q 007898          132 KVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQ  181 (585)
Q Consensus       132 k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~  181 (585)
                      -+|.|. |+       +   ....+++|.++|+++++|+|..|++.|...
T Consensus       118 ~~Y~C~-C~-------~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        118 FPYRCK-CQ-------E---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEEcC-CC-------C---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence            478887 84       4   566788899999998899999998887654

>smart00355 ZnF_C2H2 zinc finger

Probab=94.69  E-value=0.025  Score=35.58  Aligned_cols=22  Identities=32%  Similarity=0.825  Sum_probs=15.4

Q ss_pred             eecC-CCCccCChHHHHHHHHHh
Q 007898          196 YRCD-CGTLFSRRDSFITHRAFC  217 (585)
Q Consensus       196 y~C~-Cgk~F~~~s~L~~H~~~h  217 (585)
                      |.|. |++.|.....|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            4677 777777777777777544

>smart00355 ZnF_C2H2 zinc finger

Probab=94.52  E-value=0.033  Score=35.04  Aligned_cols=23  Identities=30%  Similarity=0.725  Sum_probs=17.5

Q ss_pred             ccccccCCcccChhHHHHHHHHh
Q 007898          169 WKCDKCSKRYAVQSDWKAHSKTC  191 (585)
Q Consensus       169 y~C~~CgK~F~~~s~L~~H~r~h  191 (585)
                      |+|..|++.|.....|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            56778888888888888887754

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=94.27  E-value=0.019  Score=68.80  Aligned_cols=139  Identities=14%  Similarity=0.123  Sum_probs=80.5

Q ss_pred             ccccCcccccccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898           95 CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus        95 C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      |..|+..|.++..+.-|+..-.            ...|.|+|+.|+       ..|+....|..|+|..+-+-.-  .+|
T Consensus       439 ~~~~e~~~~s~r~~~~~t~~L~------------S~~kt~~cpkc~-------~~yk~a~~L~vhmRskhp~~~~--~~c  497 (1406)
T KOG1146|consen  439 LTKAEPLLESKRSLEGQTVVLH------------SFFKTLKCPKCN-------WHYKLAQTLGVHMRSKHPESQS--AYC  497 (1406)
T ss_pred             ccchhhhhhhhcccccceeeee------------cccccccCCccc-------hhhhhHHHhhhcccccccccch--hHh
Confidence            4445555555555555533221            155889999995       8889999999999874432111  223


Q ss_pred             CCcccChhHHHHHHHH-hCCcceecC-CCCccCChHHHHHHHHHhhhccc--cc---c----c-----------------
Q 007898          175 SKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDALAE--ES---T----R-----------------  226 (585)
Q Consensus       175 gK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~~~h~~~~~--~~---~----r-----------------  226 (585)
                      . .+.....+.+=... .+.++|.|. |...|..+..|.+|++......+  +.   .    +                 
T Consensus       498 ~-~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~  576 (1406)
T KOG1146|consen  498 K-AGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLG  576 (1406)
T ss_pred             H-hccccccccccccccCCCCcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCC
Confidence            1 11111111111111 456788888 88888888888888764322211  00   0    0                 


Q ss_pred             -----cccC-CCCccCCCCCCCCCcCCCccccccc
Q 007898          227 -----AITG-TNPILSSSSHHQPGIVAGASSHVNL  255 (585)
Q Consensus       227 -----~ht~-ekp~~cs~c~~sf~~~s~l~sH~~~  255 (585)
                           .-.. +-++.|.+|..-.+...+++.|+..
T Consensus       577 ~~ags~~pktkP~~~C~vc~yetniarnlrihmts  611 (1406)
T KOG1146|consen  577 PSAGSSGPKTKPSWRCEVCSYETNIARNLRIHMTA  611 (1406)
T ss_pred             CCCCCCCCCCCCCcchhhhcchhhhhhcccccccc
Confidence                 0011 2347899999999999999888764

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.17  E-value=0.028  Score=42.47  Aligned_cols=32  Identities=16%  Similarity=0.320  Sum_probs=24.2

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCcc
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKK  168 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekp  168 (585)
                      .+.|..|++|+       ..+....+|++|+.++++.||
T Consensus        21 S~~PatCP~C~-------a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   21 SEQPATCPICG-------AVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TS--EE-TTT---------EESSHHHHHHHHHHHTTTS-
T ss_pred             cCCCCCCCcch-------hhccchhhHHHHHHHHhcccC
Confidence            67899999996       999999999999999988876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=92.47  E-value=0.03  Score=35.77  Aligned_cols=23  Identities=43%  Similarity=0.980  Sum_probs=21.2

Q ss_pred             ccccccCcccccccccchhcccc
Q 007898           93 FVCEICNKGFQRDQNLQLHRRGH  115 (585)
Q Consensus        93 y~C~~Cgk~F~~~~~L~~H~r~H  115 (585)
                      |.|++|++.|.....|+.|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            68999999999999999998865

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=91.96  E-value=0.074  Score=33.88  Aligned_cols=20  Identities=25%  Similarity=0.735  Sum_probs=9.2

Q ss_pred             cccccCCcccChhHHHHHHH
Q 007898          170 KCDKCSKRYAVQSDWKAHSK  189 (585)
Q Consensus       170 ~C~~CgK~F~~~s~L~~H~r  189 (585)
                      .|++|++.|.....|..|++
T Consensus         2 ~C~~C~~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    2 YCDICNKSFSSENSLRQHLR   21 (25)
T ss_dssp             EETTTTEEESSHHHHHHHHT
T ss_pred             CCCCCCCCcCCHHHHHHHHC
Confidence            34444444444444444443

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=91.72  E-value=0.16  Score=32.15  Aligned_cols=22  Identities=23%  Similarity=0.490  Sum_probs=11.0

Q ss_pred             eecC-CCCccCChHHHHHHHHHhh
Q 007898          196 YRCD-CGTLFSRRDSFITHRAFCD  218 (585)
Q Consensus       196 y~C~-Cgk~F~~~s~L~~H~~~h~  218 (585)
                      |+|. |..... +..|.+|++.+|
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            4555 555555 555666655544

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=91.57  E-value=0.077  Score=52.51  Aligned_cols=44  Identities=20%  Similarity=0.609  Sum_probs=23.3

Q ss_pred             CccccccccCCcccChhHHHHHHHHhCCcceecC-CCCccCChHHHHHH
Q 007898          166 EKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSRRDSFITH  213 (585)
Q Consensus       166 ekpy~C~~CgK~F~~~s~L~~H~r~hgekpy~C~-Cgk~F~~~s~L~~H  213 (585)
                      +|+| |-+|.+.|.....|..|++.   |.|+|- |-|..-.---|..|
T Consensus         9 ~kpw-cwycnrefddekiliqhqka---khfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen    9 DKPW-CWYCNREFDDEKILIQHQKA---KHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             CCce-eeecccccchhhhhhhhhhh---ccceeeeehhhhccCCCceee
Confidence            3444 55666666666666666553   446666 65443333334444

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=91.56  E-value=0.061  Score=35.22  Aligned_cols=24  Identities=29%  Similarity=0.787  Sum_probs=21.1

Q ss_pred             cccccccCcccccccccchhcccc
Q 007898           92 RFVCEICNKGFQRDQNLQLHRRGH  115 (585)
Q Consensus        92 py~C~~Cgk~F~~~~~L~~H~r~H  115 (585)
                      .|.|..|++.|.+...|..|++..
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~sk   24 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKSK   24 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred             CCCcccCCCCcCCHHHHHHHHccC
Confidence            378999999999999999998763

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=90.52  E-value=0.073  Score=34.85  Aligned_cols=21  Identities=33%  Similarity=0.786  Sum_probs=10.4

Q ss_pred             ccccccCCcccChhHHHHHHH
Q 007898          169 WKCDKCSKRYAVQSDWKAHSK  189 (585)
Q Consensus       169 y~C~~CgK~F~~~s~L~~H~r  189 (585)
                      |.|..|++.|.+...|..|++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~   22 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMK   22 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTT
T ss_pred             CCcccCCCCcCCHHHHHHHHc
Confidence            345555555555555554443

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=89.75  E-value=0.2  Score=52.22  Aligned_cols=65  Identities=22%  Similarity=0.407  Sum_probs=30.4

Q ss_pred             CccCChhhhhhhhccccCCccccccccC----CcccChhHHHHHHHHhCCcceecC---CC----CccCChHHHHHHHHH
Q 007898          148 RALGDLTGIKKHFCRKHGEKKWKCDKCS----KRYAVQSDWKAHSKTCGTREYRCD---CG----TLFSRRDSFITHRAF  216 (585)
Q Consensus       148 k~F~~~~~L~~H~r~Htgekpy~C~~Cg----K~F~~~s~L~~H~r~hgekpy~C~---Cg----k~F~~~s~L~~H~~~  216 (585)
                      +.|-+-..|.+|+|..+ |+-|.|+.-+    .-|..-..|.+|.+.   ..|.|.   |.    ..|.+...|..|+..
T Consensus       228 ~~FYdDDEL~~HcR~~H-E~ChICD~v~p~~~QYFK~Y~~Le~HF~~---~hy~ct~qtc~~~k~~vf~~~~el~~h~~~  303 (493)
T COG5236         228 IYFYDDDELRRHCRLRH-EACHICDMVGPIRYQYFKSYEDLEAHFRN---AHYCCTFQTCRVGKCYVFPYHTELLEHLTR  303 (493)
T ss_pred             ceecChHHHHHHHHhhh-hhhhhhhccCccchhhhhCHHHHHHHhhc---CceEEEEEEEecCcEEEeccHHHHHHHHHH
Confidence            55555556666655433 2222222211    124455555555443   125553   42    256666666666543

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=89.69  E-value=0.25  Score=31.22  Aligned_cols=21  Identities=38%  Similarity=0.699  Sum_probs=11.4

Q ss_pred             ccccccCCcccChhHHHHHHHH
Q 007898          169 WKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       169 y~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      |+|..|..... +..|.+|+++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~   21 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKR   21 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHh
Confidence            45666665555 5566666655

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=89.59  E-value=0.26  Score=51.31  Aligned_cols=118  Identities=16%  Similarity=0.232  Sum_probs=82.5

Q ss_pred             ccccccCCCCcccCCCCCccCChhhhhhhhccccCC----------------------ccccccccCCcccChhHHHHHH
Q 007898          131 KKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGE----------------------KKWKCDKCSKRYAVQSDWKAHS  188 (585)
Q Consensus       131 ~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htge----------------------kpy~C~~CgK~F~~~s~L~~H~  188 (585)
                      .+..+|-.|.      ......++.+..|+-..++-                      ..+.|-+|.|.|..+..|+.||
T Consensus       142 ~fslqClFCn------~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHM  215 (423)
T KOG2482|consen  142 IFSLQCLFCN------NEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHM  215 (423)
T ss_pred             eeeeEEEEec------chhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHH
Confidence            3456799996      35555667777776543321                      2378999999999999999999


Q ss_pred             HH--hCC-----c------------------------------------------------c--eecC-CCCccCChHHH
Q 007898          189 KT--CGT-----R------------------------------------------------E--YRCD-CGTLFSRRDSF  210 (585)
Q Consensus       189 r~--hge-----k------------------------------------------------p--y~C~-Cgk~F~~~s~L  210 (585)
                      |.  |.+     +                                                +  .+|- |....-....|
T Consensus       216 rkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~~en~~~l  295 (423)
T KOG2482|consen  216 RKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNFYENPVFL  295 (423)
T ss_pred             HhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccchhhHHHH
Confidence            87  531     0                                                1  2788 99988889999


Q ss_pred             HHHHHHhhhcccccccc----------------ccCCCCccCCCCCCCCCcCCCcccccc
Q 007898          211 ITHRAFCDALAEESTRA----------------ITGTNPILSSSSHHQPGIVAGASSHVN  254 (585)
Q Consensus       211 ~~H~~~h~~~~~~~~r~----------------ht~ekp~~cs~c~~sf~~~s~l~sH~~  254 (585)
                      ..||+..|...-.....                ....+-..|-.|.-+|-....+..|+-
T Consensus       296 ~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~  355 (423)
T KOG2482|consen  296 FEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMV  355 (423)
T ss_pred             HHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcc
Confidence            99999877544222111                112334567888889999999988874

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=89.17  E-value=4.4  Score=42.05  Aligned_cols=115  Identities=12%  Similarity=0.101  Sum_probs=55.9

Q ss_pred             CcccccccCcccccccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhh-hccccCCccc
Q 007898           91 NRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKH-FCRKHGEKKW  169 (585)
Q Consensus        91 kpy~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H-~r~Htgekpy  169 (585)
                      ..|.|.. +..|+....+--|...-.   .......+.++.+.+-|+.|+.--...+|....+..+-.- -+.|.   .-
T Consensus        52 ~~~~~~~-~p~f~~~~r~pphl~w~~---~V~~~gek~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~---dK  124 (389)
T KOG2932|consen   52 DHLVLAD-LPVFKGIGRVPPHLTWIK---PVGRRGEKQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDS---DK  124 (389)
T ss_pred             hhhhhcC-CchhcccccCCCceeeee---ecccccccccCcceEeecccCCcceeeecccccchhhhhhhhhcCc---cc
Confidence            3444433 455666655555544322   1112223344677788999962100111111111111000 01111   12


Q ss_pred             cccccCCcccChhHHHHHHHHhCCcceecC----CCCccCChHHHHHHHHHhh
Q 007898          170 KCDKCSKRYAVQSDWKAHSKTCGTREYRCD----CGTLFSRRDSFITHRAFCD  218 (585)
Q Consensus       170 ~C~~CgK~F~~~s~L~~H~r~hgekpy~C~----Cgk~F~~~s~L~~H~~~h~  218 (585)
                      .|..|.....      +=..+.-+..|.|.    |.++|..+..|..|+..-|
T Consensus       125 ~Cp~C~d~Vq------rIeq~~~g~iFmC~~~~GC~RTyLsqrDlqAHInhrH  171 (389)
T KOG2932|consen  125 ICPLCDDRVQ------RIEQIMMGGIFMCAAPHGCLRTYLSQRDLQAHINHRH  171 (389)
T ss_pred             cCcCcccHHH------HHHHhcccceEEeecchhHHHHHhhHHHHHHHhhhhh
Confidence            4666654321      11112446789995    9999999999999985444

>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.02  E-value=0.23  Score=48.24  Aligned_cols=83  Identities=20%  Similarity=0.444  Sum_probs=64.4

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHH-h----------CCcceec
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-C----------GTREYRC  198 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-h----------gekpy~C  198 (585)
                      +...|.|++-||     -+.|.....+..|.-+-++   -.|.+|.+.|.+..-|..|+.- |          |..-|.|
T Consensus        76 ~~~~~~cqvagc-----~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~C  147 (253)
T KOG4173|consen   76 RVPAFACQVAGC-----CQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQC  147 (253)
T ss_pred             ccccccccccch-----HHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHH
Confidence            445688999887     5788877777777655444   4799999999999999999865 5          3446999


Q ss_pred             C---CCCccCChHHHHHHHHHhhhc
Q 007898          199 D---CGTLFSRRDSFITHRAFCDAL  220 (585)
Q Consensus       199 ~---Cgk~F~~~s~L~~H~~~h~~~  220 (585)
                      -   |+..|.+...-+.|+-..|..
T Consensus       148 lvEgCt~KFkT~r~RkdH~I~~Hk~  172 (253)
T KOG4173|consen  148 LVEGCTEKFKTSRDRKDHMIRMHKY  172 (253)
T ss_pred             HHHhhhhhhhhhhhhhhHHHHhccC
Confidence            4   999999999989998555543

>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]

Probab=87.29  E-value=0.37  Score=50.26  Aligned_cols=48  Identities=21%  Similarity=0.325  Sum_probs=38.4

Q ss_pred             ccccccCCcccChhHHHHHHHH-hCC---------------------------cceecC-CCCccCChHHHHHHHHH
Q 007898          169 WKCDKCSKRYAVQSDWKAHSKT-CGT---------------------------REYRCD-CGTLFSRRDSFITHRAF  216 (585)
Q Consensus       169 y~C~~CgK~F~~~s~L~~H~r~-hge---------------------------kpy~C~-Cgk~F~~~s~L~~H~~~  216 (585)
                      .+|-.|.+...+...|..||++ |.-                           +.-.|- |.-.|-....|..|+.-
T Consensus       280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~e  356 (423)
T KOG2482|consen  280 VVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMVE  356 (423)
T ss_pred             eEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhccc
Confidence            4899999999889999999998 731                           112555 99999999999999843

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=86.17  E-value=0.59  Score=30.20  Aligned_cols=19  Identities=32%  Similarity=0.754  Sum_probs=9.9

Q ss_pred             ecC-CCCccCChHHHHHHHHH
Q 007898          197 RCD-CGTLFSRRDSFITHRAF  216 (585)
Q Consensus       197 ~C~-Cgk~F~~~s~L~~H~~~  216 (585)
                      .|. ||+.| ..+.|.+|++.
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHHh
Confidence            455 55555 44455555543

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.01  E-value=0.67  Score=53.03  Aligned_cols=72  Identities=17%  Similarity=0.260  Sum_probs=49.6

Q ss_pred             ccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc------CCcccChhHHHHHHHHhCCcceecC---CC-C
Q 007898          133 VYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC------SKRYAVQSDWKAHSKTCGTREYRCD---CG-T  202 (585)
Q Consensus       133 ~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C------gK~F~~~s~L~~H~r~hgekpy~C~---Cg-k  202 (585)
                      .-.|..|       ...|-....|.+|++.++    |.|.+|      +..|....+|..|-|.   .-|.|+   |. +
T Consensus       182 hp~C~~C-------~~~fld~~el~rH~~~~h----~~chfC~~~~~~neyy~~~~dLe~HfR~---~HflCE~~~C~~~  247 (669)
T KOG2231|consen  182 HPLCKFC-------HERFLDDDELYRHLRFDH----EFCHFCDYKTGQNEYYNDYDDLEEHFRK---GHFLCEEEFCRTK  247 (669)
T ss_pred             Cccchhh-------hhhhccHHHHHHhhccce----eheeecCcccccchhcccchHHHHHhhh---cCccccccccccc
Confidence            3568888       488999999999998765    667776      4567888899999887   236775   53 4


Q ss_pred             ccCChHHHHHHHHHhh
Q 007898          203 LFSRRDSFITHRAFCD  218 (585)
Q Consensus       203 ~F~~~s~L~~H~~~h~  218 (585)
                      .|.....+..|++.|.
T Consensus       248 ~f~~~~~~ei~lk~~~  263 (669)
T KOG2231|consen  248 KFYVAFELEIELKAHN  263 (669)
T ss_pred             eeeehhHHHHHHHhhc
Confidence            4444444555554433

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=83.86  E-value=0.26  Score=48.83  Aligned_cols=41  Identities=27%  Similarity=0.403  Sum_probs=34.1

Q ss_pred             cCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHHHH
Q 007898          136 CPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAH  187 (585)
Q Consensus       136 C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H  187 (585)
                      |.+|+       +.|.+..-|..|.+.    |.|+|.+|.|....--.|..|
T Consensus        13 cwycn-------refddekiliqhqka----khfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   13 CWYCN-------REFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             eeecc-------cccchhhhhhhhhhh----ccceeeeehhhhccCCCceee
Confidence            88885       999999999988775    459999999987777777766

>smart00451 ZnF_U1 U1-like zinc finger

Probab=83.49  E-value=0.79  Score=31.44  Aligned_cols=23  Identities=22%  Similarity=0.450  Sum_probs=14.4

Q ss_pred             cccccccCCcccChhHHHHHHHH
Q 007898          168 KWKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       168 py~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      +|.|++|++.|.....+..|++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            35566666666666666666554

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]

Probab=82.57  E-value=0.79  Score=46.10  Aligned_cols=44  Identities=25%  Similarity=0.684  Sum_probs=26.3

Q ss_pred             ccccccCCcccChhHHHHHHHHhCCcceecC-CCCccCChHHHHHHH
Q 007898          169 WKCDKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSRRDSFITHR  214 (585)
Q Consensus       169 y~C~~CgK~F~~~s~L~~H~r~hgekpy~C~-Cgk~F~~~s~L~~H~  214 (585)
                      |.|.+||.... +..+.+|+..+...-|.|- |++.|-+ .+++.|.
T Consensus         4 FtCnvCgEsvK-Kp~vekH~srCrn~~fSCIDC~k~F~~-~sYknH~   48 (276)
T KOG2186|consen    4 FTCNVCGESVK-KPQVEKHMSRCRNAYFSCIDCGKTFER-VSYKNHT   48 (276)
T ss_pred             Eehhhhhhhcc-ccchHHHHHhccCCeeEEeeccccccc-chhhhhh
Confidence            55666666544 3455666666333666776 7777766 5556664

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=82.56  E-value=1.1  Score=29.03  Aligned_cols=21  Identities=19%  Similarity=0.550  Sum_probs=15.5

Q ss_pred             ccccccCCcccChhHHHHHHHH
Q 007898          169 WKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       169 y~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      ..|..||+.| ....|.+|+++
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4688888888 56777888764

>TIGR00622 ssl1 transcription factor ssl1

Probab=80.05  E-value=3.3  Score=36.92  Aligned_cols=78  Identities=10%  Similarity=0.143  Sum_probs=48.3

Q ss_pred             CccccccccCCcccChhHHHHHHHH-hCCcc------------eecC-CCCccCChHHHHHHHHHhhhccccccccccCC
Q 007898          166 EKKWKCDKCSKRYAVQSDWKAHSKT-CGTRE------------YRCD-CGTLFSRRDSFITHRAFCDALAEESTRAITGT  231 (585)
Q Consensus       166 ekpy~C~~CgK~F~~~s~L~~H~r~-hgekp------------y~C~-Cgk~F~~~s~L~~H~~~h~~~~~~~~r~ht~e  231 (585)
                      +=|-.|++||-......+|.+--.. -.-++            ..|. |.+.|.......             ...-...
T Consensus        13 ~LP~~CpiCgLtLVss~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~-------------~~~~~~~   79 (112)
T TIGR00622        13 ELPVECPICGLTLILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSP-------------FDELKDS   79 (112)
T ss_pred             CCCCcCCcCCCEEeccchHHHhhhccCCCcccccccccccCCCCcccCcCCCCCCccccc-------------ccccccc
Confidence            3467888888888888877763211 11111            2488 888887653111             0012234


Q ss_pred             CCccCCCCCCCCCcCCCcccccccc
Q 007898          232 NPILSSSSHHQPGIVAGASSHVNLQ  256 (585)
Q Consensus       232 kp~~cs~c~~sf~~~s~l~sH~~~~  256 (585)
                      ..|.|..|.+.|-..=..-.|..++
T Consensus        80 ~~y~C~~C~~~FC~dCD~fiHe~Lh  104 (112)
T TIGR00622        80 HRYVCAVCKNVFCVDCDVFVHESLH  104 (112)
T ss_pred             cceeCCCCCCccccccchhhhhhcc
Confidence            5688999999888777777776554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	585
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		1e-07
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		4e-04

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 22/141 (15%)
Query: 76  DAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYV 135
           D + +    +T      + C  C K F +  NL+ H+R H               +K Y 
Sbjct: 61  DKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTH-------------TGEKPYA 107
Query: 136 CPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTR 194
           CPE         ++   L  ++ H     GEK +KC +C K ++ + +   H +T  G +
Sbjct: 108 CPECG-------KSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEK 160
Query: 195 EYRC-DCGTLFSRRDSFITHR 214
            Y+C +CG  FSRRD+   H+
Sbjct: 161 PYKCPECGKSFSRRDALNVHQ 181

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 132 KVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT- 190
           K Y CPE         ++    + ++KH     GEK +KC +C K ++  SD + H +T 
Sbjct: 3   KPYKCPECG-------KSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTH 55
Query: 191 CGTREYRC-DCGTLFSRRDSFITHR 214
            G + Y+C +CG  FSR D    H+
Sbjct: 56  TGEKPYKCPECGKSFSRSDHLSRHQ 80

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	585
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	2e-08
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	3e-05
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	5e-07
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	3e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	1e-06
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	8e-06
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	4e-06
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	9e-05
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	9e-06
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	1e-05
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	3e-04
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	2e-05
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	2e-05
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-05
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	5e-05
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	6e-05
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-04
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	4e-04
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	2e-04
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	4e-04
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	2e-04

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 26/128 (20%)

Query: 93  FVCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRAL 150
           F+C    CNK + +  +LQ+H R H          + E   K Y C   +C      R  
Sbjct: 7   FMCAYPGCNKRYFKLSHLQMHSRKH----------TGE---KPYQCDFKDC-----ERRF 48

Query: 151 GDLTGIKKHFCRKH-GEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRC---DCGTLFS 205
                +K+H  R+H G K ++C  C ++++     K H++T  G + + C    C   F+
Sbjct: 49  SRSDQLKRHQ-RRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFA 107

Query: 206 RRDSFITH 213
           R D  + H
Sbjct: 108 RSDELVRH 115

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 11/88 (12%)

Query: 132 KVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKH-GEKKWKCDK--CSKRYAVQSDWKAHS 188
           + ++C  P C     ++    L+ ++ H  RKH GEK ++CD   C +R++     K H 
Sbjct: 5   RPFMCAYPGC-----NKRYFKLSHLQMH-SRKHTGEKPYQCDFKDCERRFSRSDQLKRHQ 58

Query: 189 KT-CGTREYRCD-CGTLFSRRDSFITHR 214
           +   G + ++C  C   FSR D   TH 
Sbjct: 59  RRHTGVKPFQCKTCQRKFSRSDHLKTHT 86

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 48.7 bits (117), Expect = 5e-07
 Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 23/103 (22%)

Query: 93  FVCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRAL 150
             C    C K + R +NL+ H R H          + E   K Y+C    C     S+A 
Sbjct: 68  HKCTFEGCRKSYSRLENLKTHLRSH----------TGE---KPYMCEHEGC-----SKAF 109

Query: 151 GDLTGIKKHFCRKH-GEKKWKCDK--CSKRYAVQSDWKAHSKT 190
            + +   KH  R H  EK + C    C+KRY   S  + H KT
Sbjct: 110 SNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 28/126 (22%), Positives = 42/126 (33%), Gaps = 20/126 (15%)

Query: 95  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLT 154
            + C++ F   + L  H           +       +K +VC           R      
Sbjct: 6   WDGCSQEFDSQEQLVHHIN--------SEHI--HGERKEFVCHW--GGCSRELRPFKAQY 53

Query: 155 GIKKHFCRKH-GEKKWKCD--KCSKRYAVQSDWKAHSKT-CGTREYRC---DCGTLFSRR 207
            +  H  R+H GEK  KC    C K Y+   + K H ++  G + Y C    C   FS  
Sbjct: 54  MLVVHM-RRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNA 112

Query: 208 DSFITH 213
                H
Sbjct: 113 SDRAKH 118

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 11/97 (11%)

Query: 123 QRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKH-GEKKWKC--DKCSKRYA 179
                  +++++ C  P C     ++     + +K H  R H GEK +KC  + C  R+A
Sbjct: 5   SSGPDLEKRRIHYCDYPGC-----TKVYTKSSHLKAHL-RTHTGEKPYKCTWEGCDWRFA 58

Query: 180 VQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHR 214
              +   H +   G + ++C  C   FSR D    H 
Sbjct: 59  RSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 43.8 bits (104), Expect = 8e-06
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 22/101 (21%)

Query: 93  FVCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRAL 150
             C+   C K + +  +L+ H R H          + E   K Y C    C         
Sbjct: 16  HYCDYPGCTKVYTKSSHLKAHLRTH----------TGE---KPYKCTWEGC-----DWRF 57

Query: 151 GDLTGIKKHFCRKH-GEKKWKCDKCSKRYAVQSDWKAHSKT 190
                + +H+ RKH G K ++C  C++ ++       H K 
Sbjct: 58  ARSDELTRHY-RKHTGAKPFQCGVCNRSFSRSDHLALHMKR 97

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 45.2 bits (108), Expect = 4e-06
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 10/89 (11%)

Query: 129 IRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHS 188
           +  +   CP   C     ++   D + ++KH    HG +   C +C K +   S  K H 
Sbjct: 1   MEPRTIACPHKGC-----TKMFRDNSAMRKH-LHTHGPRVHVCAECGKAFVESSKLKRHQ 54

Query: 189 KT-CGTREYRC---DCGTLFSRRDSFITH 213
               G + ++C    CG  FS   +  TH
Sbjct: 55  LVHTGEKPFQCTFEGCGKRFSLDFNLRTH 83

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 41.3 bits (98), Expect = 9e-05
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 29/126 (23%)

Query: 95  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLT 154
            + C K F+ +  ++ H   H                +V+VC E  C      +A  + +
Sbjct: 10  HKGCTKMFRDNSAMRKHLHTHG--------------PRVHVCAE--C-----GKAFVESS 48

Query: 155 GIKKHFCRKH-GEKKWKC--DKCSKRYAVQSDWKAHSKT-CGTREYRC---DCGTLFSRR 207
            +K+H    H GEK ++C  + C KR+++  + + H +   G R Y C    C   F++ 
Sbjct: 49  KLKRHQ-LVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQS 107

Query: 208 DSFITH 213
            +  +H
Sbjct: 108 TNLKSH 113

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 42.5 bits (101), Expect = 9e-06
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 162 RKH-GEKKWKCDKCSKRYAVQSDWKAHSKTC---GTREYRC-DCGTLFSRRDSFITHR 214
               GE  ++C  CS+ Y   S++  H  T      + Y C  C   F+R+D+   H 
Sbjct: 3   FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 31/131 (23%), Positives = 39/131 (29%), Gaps = 28/131 (21%)

Query: 93  FVCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRAL 150
           F C+   C KGF    +L  H   H          + E   K + C    C         
Sbjct: 43  FPCKEEGCEKGFTSLHHLTRHSLTH----------TGE---KNFTCDSDGC-----DLRF 84

Query: 151 GDLTGIKKHFCRKHGEKKW--KCDK--CSKRYAVQSDWKAHSKT-CGTREYRC---DCGT 202
                +KKHF R H  K     C    C K +   +  K H  +      Y C    C  
Sbjct: 85  TTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDK 144

Query: 203 LFSRRDSFITH 213
            FS       H
Sbjct: 145 RFSLPSRLKRH 155

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 30/134 (22%), Positives = 48/134 (35%), Gaps = 32/134 (23%)

Query: 92  RFVCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRA 149
           R++C    C   + ++  LQ H   H          + E   K + C E  C      + 
Sbjct: 12  RYICSFADCGAAYNKNWKLQAHLCKH----------TGE---KPFPCKEEGC-----EKG 53

Query: 150 LGDLTGIKKHFCRKH-GEKKWKCD--KCSKRYAVQSDWKAHSKTCGTRE----YRC---D 199
              L  + +H    H GEK + CD   C  R+  +++ K H            Y C   +
Sbjct: 54  FTSLHHLTRHS-LTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR-FHNIKICVYVCHFEN 111

Query: 200 CGTLFSRRDSFITH 213
           CG  F + +    H
Sbjct: 112 CGKAFKKHNQLKVH 125

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 19/95 (20%), Positives = 27/95 (28%), Gaps = 21/95 (22%)

Query: 93  FVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGD 152
           F C IC + F R  +L  H R H          + E   K + C    C      R    
Sbjct: 4   FQCRICMRNFSRSDHLTTHIRTH----------TGE---KPFACDI--C-----GRKFAR 43

Query: 153 LTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAH 187
               K+H            DK  +  +     +  
Sbjct: 44  SDERKRHR-DIQHILPILEDKVEELLSKNYHLENE 77

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 132 KVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKH-GEKKWKCDKCSKRYAVQSDWKAHSKT 190
           + Y CP  +C      R       + +H  R H G+K ++C  C + ++       H +T
Sbjct: 3   RPYACPVESC-----DRRFSQSGSLTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56

Query: 191 -CGTREYRCD-CGTLFSRRDSFITHR 214
             G + + CD CG  F+R D    H 
Sbjct: 57  HTGEKPFACDICGRKFARSDERKRHT 82

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 162 RKH-GEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRA 215
                    KC +CS   + ++  + H +  C  R ++C+ C     +  +   H  
Sbjct: 2   SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMK 58

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 41.0 bits (97), Expect = 5e-05
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 6/62 (9%)

Query: 157 KKHFCRKH-GEKKWKCDKCSKRYAVQSDWKAHSKT---CGTREYRCD-CGTLFSRRDSFI 211
                R H GEK ++C  C  R+      K H          ++ C  C T+ +R+    
Sbjct: 4   GSSG-RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLG 62

Query: 212 TH 213
            H
Sbjct: 63  VH 64

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 20/96 (20%)

Query: 95  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLT 154
            E C K F++   L++H+  H          +++     Y CP   C      +     +
Sbjct: 6   FENCGKAFKKHNQLKVHQFSH----------TQQ---LPYECPHEGC-----DKRFSLPS 47

Query: 155 GIKKHFCRKH-GEKKWKCDKCSKRYAVQSDWKAHSK 189
            +K+H  + H G    K D CS      + +  H  
Sbjct: 48  RLKRHE-KVHAGYPCKKDDSCSFVGKTWTLYLKHVA 82

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 5/55 (9%)

Query: 165 GEKKWKCDKCSKRYAVQSDWKAHSKT----CGTREYRCD-CGTLFSRRDSFITHR 214
           G    +C+ C      ++    H +          + C+ CG  F + DS   HR
Sbjct: 4   GSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 14/98 (14%), Positives = 22/98 (22%), Gaps = 45/98 (45%)

Query: 93  FVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGD 152
             CEIC    ++  +L  H+R H                                     
Sbjct: 8   LQCEICGFTCRQKASLNWHQRKHA------------------------------------ 31

Query: 153 LTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT 190
                          ++ C+ C KR+       AH   
Sbjct: 32  ---------ETVAALRFPCEFCGKRFEKPDSVAAHRSK 60

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 29/109 (26%), Positives = 39/109 (35%), Gaps = 23/109 (21%)

Query: 95  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLT 154
           C    K F+    L  H R H          + E   K + CP P C      +      
Sbjct: 65  CPREGKSFKAKYKLVNHIRVH----------TGE---KPFPCPFPGC-----GKIFARSE 106

Query: 155 GIKKHFCRKH-GEKKWKC--DKCSKRYAVQSDWKAHSKT-CGTREYRCD 199
            +K H  R H GEK +KC  + C +R+A  SD K H       +     
Sbjct: 107 NLKIHK-RTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 21/129 (16%)

Query: 93  FVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPS-RALG 151
              + C++ F     L  H                   +  +VC    C     S +A  
Sbjct: 26  RPKKSCDRTFSTMHELVTHVTME---------HVGGPEQNNHVCYWEECPREGKSFKAKY 76

Query: 152 DLTGIKKHFCRKH-GEKKWKCDK--CSKRYAVQSDWKAHSKT-CGTREYRC---DCGTLF 204
            L     H  R H GEK + C    C K +A   + K H +T  G + ++C    C   F
Sbjct: 77  KL---VNHI-RVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRF 132

Query: 205 SRRDSFITH 213
           +       H
Sbjct: 133 ANSSDRKKH 141

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 20/97 (20%)

Query: 95  CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLT 154
              C K + +  +L+ H R H          + E   K Y C    C             
Sbjct: 10  YAGCGKTYTKSSHLKAHLRTH----------TGE---KPYHCDWDGC-----GWKFARSD 51

Query: 155 GIKKHFCRKH-GEKKWKCDKCSKRYAVQSDWKAHSKT 190
            + +H+ RKH G + ++C KC + ++       H K 
Sbjct: 52  ELTRHY-RKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	585
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.93
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.9
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.87
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.87
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.86
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.84
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.84
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.84
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.83
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.82
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.81
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.8
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.76
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.75
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.7
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.7
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.69
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.68
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.67
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.67
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.66
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.66
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.66
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.65
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.64
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.63
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.63
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.62
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.62
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.62
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.61
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.6
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.56
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.54
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.52
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.52
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.52
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.51
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.51
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.48
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.47
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.47
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.46
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.45
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.44
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.41
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.41
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.4
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.39
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.38
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.38
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.38
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.38
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.35
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.34
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.34
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.33
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.33
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.32
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.27
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.27
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.25
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.25
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.25
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.25
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.24
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.24
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.22
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.22
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.21
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.17
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.16
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.12
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.11
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.1
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.09
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.09
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.08
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.03
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.02
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.0
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.96
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.96
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.95
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.95
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.95
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.94
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.94
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.94
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.94
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.94
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.94
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.94
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.94
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.93
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.93
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.93
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.93
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.93
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.93
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.93
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.92
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.92
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.92
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.92
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.92
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.92
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.92
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.92
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.92
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.91
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.91
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.91
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.91
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.91
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.91
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.91
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.89
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.89
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.89
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.89
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.89
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.88
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.88
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.88
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.88
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.87
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.87
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.86
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.86
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.86
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.86
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.85
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.85
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.85
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.84
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.84
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.84
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.84
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.84
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.84
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.83
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.83
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.83
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.82
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.82
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.82
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.82
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.82
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.82
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.82
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.82
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.82
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.82
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.82
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.82
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.82
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.82
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.82
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.82
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.81
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.81
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.81
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.81
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.81
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.81
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.81
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.81
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.81
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.81
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.81
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.81
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.81
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.81
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.81
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.81
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.8
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.8
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.8
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.8
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.8
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.8
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.8
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.8
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.8
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.79
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.79
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.79
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.79
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.79
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.79
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.79
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.79
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.79
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.79
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.79
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.78
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.78
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.78
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.78
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.78
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.78
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.78
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.78
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.78
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.78
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.78
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.77
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.77
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.77
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.77
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.77
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.76
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.76
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.76
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.76
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.76
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.75
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.75
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.75
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.75
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.75
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.75
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.74
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.73
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.73
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.73
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.72
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.72
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.71
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.71
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.7
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.7
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.69
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.68
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.67
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.67
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.67
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.66
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.66
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.65
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.65
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.65
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.65
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.65
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.65
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.65
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.65
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.64
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.64
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.64
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.64
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.64
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.63
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.63
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.62
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.62
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.62
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.62
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.61
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.61
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.61
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.6
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.6
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.6
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.6
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.59
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.59
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.59
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.59
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.59
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.58
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.58
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.58
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.57
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.57
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.56
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.56
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.56
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.55
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.55
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.53
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.52
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.51
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.51
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.51
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.49
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.49
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.49
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.47
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.47
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.45
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.42
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.4
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.31
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.31
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.27
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.17
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.17
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.16
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.13
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.04
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.02
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.98
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.95
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	97.95
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	97.94
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.94
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.92
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.92
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.92
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.91
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.91
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.9
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	97.9
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	97.88
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.86
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.85
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.84
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.84
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.83
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.79
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.78
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.74
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.73
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.73
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.72
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.71
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	97.65
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.64
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	97.63
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.6
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.56
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.55
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.53
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.52
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.52
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.51
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.49
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.49
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.62
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.48
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.46
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.45
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.44
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.42
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.42
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.54
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.41
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.53
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.36
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.34
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.34
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.33
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	96.43
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.31
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.29
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.27
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.22
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.22
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.29
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.18
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.18
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.18
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.26
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.16
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.15
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.09
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.05
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	96.98
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	96.74
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.58
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	96.51
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	96.13
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.0
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.18
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.04
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	93.81
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	93.7
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	93.61
1v65_A	64	Riken cDNA 2610044O15; transcriptional repressor,	93.17
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	92.69
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	92.09
2yuc_A	76	TNF receptor-associated factor 4; ZF-TRAF, cystein	83.23

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.93  E-value=5.6e-27  Score=224.55  Aligned_cols=164  Identities=25%  Similarity=0.488  Sum_probs=141.7

Q ss_pred             ccccCCCCCCCCCCchhhccCcccccccCcccccccCcccccccccchhcccccCccccccchhhhccccccccCCCCcc
Q 007898           63 AKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCV  142 (585)
Q Consensus        63 ~k~k~~~~~~~~~~~~~~~~~~k~~~~~kpy~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~  142 (585)
                      ....+..++..+.....+..|.++|.++++|.|++|++.|.....|..|+++|.             ++++|.|++|+  
T Consensus        20 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C~--   84 (190)
T 2i13_A           20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHT-------------GEKPYKCPECG--   84 (190)
T ss_dssp             -----------CCSSHHHHHGGGCC---CCEECTTTCCEESSHHHHHHHHHHHH-------------CCCCEECTTTC--
T ss_pred             CCCcCCCCccccCCHHHHHHHHHHcCCCCCccCCCcCchhCCHHHHHHHHHhcC-------------CCCCccCcccC--
Confidence            346788889888888899999999999999999999999999999999999998             88999999996  


Q ss_pred             cCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCChHHHHHHHHHhhhc
Q 007898          143 HHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDAL  220 (585)
Q Consensus       143 ~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~~~h~~~  220 (585)
                           +.|.....|..|+++|+++++|.|++|++.|.....|..|+++ +++++|.|+ |++.|..+..|..|+++    
T Consensus        85 -----~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~----  155 (190)
T 2i13_A           85 -----KSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRT----  155 (190)
T ss_dssp             -----CEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHH----
T ss_pred             -----CccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHHHHh----
Confidence                 9999999999999999999999999999999999999999999 799999999 99999999999999954    


Q ss_pred             cccccccccCCCCccCCCCCCCCCcCCCccccccccc
Q 007898          221 AEESTRAITGTNPILSSSSHHQPGIVAGASSHVNLQI  257 (585)
Q Consensus       221 ~~~~~r~ht~ekp~~cs~c~~sf~~~s~l~sH~~~~~  257 (585)
                             |.++++|.|..|++.|.....|..|++.+.
T Consensus       156 -------H~~~~~~~C~~C~~~f~~~~~L~~H~~~H~  185 (190)
T 2i13_A          156 -------HTGEKPYKCPECGKSFSRRDALNVHQRTHT  185 (190)
T ss_dssp             -------HHCCCCEECTTTCCEESSHHHHHHHHTTC-
T ss_pred             -------cCCCCCeECCCCCCccCCHHHHHHHHHhcC
Confidence                   557899999999999999999999998764

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.90  E-value=4e-25  Score=211.63  Aligned_cols=147  Identities=26%  Similarity=0.530  Sum_probs=116.3

Q ss_pred             hccCcccccccCcccccccCcccccccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhh
Q 007898           80 IALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKH  159 (585)
Q Consensus        80 ~~~~~k~~~~~kpy~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H  159 (585)
                      +..+...+.++++|.|++|++.|.....|..|+++|.             ++++|.|++|+       +.|.....|..|
T Consensus         9 l~~h~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C~-------~~f~~~~~l~~H   68 (190)
T 2i13_A            9 SVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTHT-------------GEKPYKCPECG-------KSFSDKKDLTRH   68 (190)
T ss_dssp             ----------------------CCSSHHHHHGGGCC----------------CCEECTTTC-------CEESSHHHHHHH
T ss_pred             chhhhhhcCCCCCCcCCCCccccCCHHHHHHHHHHcC-------------CCCCccCCCcC-------chhCCHHHHHHH
Confidence            4456677888999999999999999999999999998             88999999996       999999999999


Q ss_pred             hccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCChHHHHHHHHHhhhccccccccccCCCCccCC
Q 007898          160 FCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSS  237 (585)
Q Consensus       160 ~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~~~h~~~~~~~~r~ht~ekp~~cs  237 (585)
                      +++|+++++|.|++|++.|.....|..|+++ +++++|.|+ |++.|.....|..|+++           |.++++|.|.
T Consensus        69 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~-----------h~~~~~~~C~  137 (190)
T 2i13_A           69 QRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRT-----------HTGEKPYKCP  137 (190)
T ss_dssp             HHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHHHH-----------HHCCCCEECT
T ss_pred             HHhcCCCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHH-----------hCCCCCeECC
Confidence            9999999999999999999999999999999 799999999 99999999999999954           5578999999


Q ss_pred             CCCCCCCcCCCccccccccc
Q 007898          238 SSHHQPGIVAGASSHVNLQI  257 (585)
Q Consensus       238 ~c~~sf~~~s~l~sH~~~~~  257 (585)
                      .|++.|.....|..|++.+.
T Consensus       138 ~C~~~f~~~~~L~~H~~~H~  157 (190)
T 2i13_A          138 ECGKSFSREDNLHTHQRTHT  157 (190)
T ss_dssp             TTCCEESCHHHHHHHHHHHH
T ss_pred             CCCcccCCHHHHHHHHHhcC
Confidence            99999999999999998765

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.87  E-value=3.1e-23  Score=191.34  Aligned_cols=143  Identities=23%  Similarity=0.418  Sum_probs=129.4

Q ss_pred             cCcccccccCcccccccccchhcc---cccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCC
Q 007898           90 TNRFVCEICNKGFQRDQNLQLHRR---GHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGE  166 (585)
Q Consensus        90 ~kpy~C~~Cgk~F~~~~~L~~H~r---~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htge  166 (585)
                      +.+|.|++|++.|.+...|..|++   +|.             ++++|.|++|+|  ..|++.|.....|..|+++|+++
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h~h~-------------~~~~~~C~~c~C--~~c~~~f~~~~~l~~H~~~h~~~   65 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHG-------------ERKEFVCHWGGC--SRELRPFKAQYMLVVHMRRHTGE   65 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHTSSS-------------CSSCCCCCBTTC--TTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhccCC-------------CCcceeCCCCCc--cchhhhhhhHHHHHHHHHhcCCC
Confidence            357999999999999999999998   565             889999998765  24469999999999999999999


Q ss_pred             ccccccc--cCCcccChhHHHHHHHH-hCCcceecC---CCCccCChHHHHHHHHHhhhccccccccccCCCCccCCC--
Q 007898          167 KKWKCDK--CSKRYAVQSDWKAHSKT-CGTREYRCD---CGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSSS--  238 (585)
Q Consensus       167 kpy~C~~--CgK~F~~~s~L~~H~r~-hgekpy~C~---Cgk~F~~~s~L~~H~~~h~~~~~~~~r~ht~ekp~~cs~--  238 (585)
                      ++|.|.+  |++.|.....|..|+++ +++++|.|+   |++.|..+..|.+|++          ++|+++++|.|..  
T Consensus        66 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~----------~~H~~~~~~~C~~~~  135 (155)
T 2gli_A           66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQN----------RTHSNEKPYVCKLPG  135 (155)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHH----------HTTCSCCCEECCSTT
T ss_pred             CCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHH----------HhcCCCCCeeCCCCC
Confidence            9999986  99999999999999999 789999998   9999999999999983          4667899999998  


Q ss_pred             CCCCCCcCCCccccccccc
Q 007898          239 SHHQPGIVAGASSHVNLQI  257 (585)
Q Consensus       239 c~~sf~~~s~l~sH~~~~~  257 (585)
                      |++.|.....|..|++.++
T Consensus       136 C~~~f~~~~~L~~H~~~hh  154 (155)
T 2gli_A          136 CTKRYTDPSSLRKHVKTVH  154 (155)
T ss_dssp             TCCEESSHHHHHHHHHHSC
T ss_pred             CccccCCHHHHHHHHHhhc
Confidence            9999999999999987653

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.87  E-value=7e-23  Score=195.96  Aligned_cols=156  Identities=20%  Similarity=0.286  Sum_probs=125.1

Q ss_pred             CCCCCCCCCchhhccCcccccccCcccc--cccCcccccccccchhcccccCccccccchhhhccccccccC--CCCccc
Q 007898           68 NLPGNPDPDAEVIALSPKTLMATNRFVC--EICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCP--EPNCVH  143 (585)
Q Consensus        68 ~~~~~~~~~~~~~~~~~k~~~~~kpy~C--~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~--~CgC~~  143 (585)
                      ..++..+.....+..|.++|.++++|.|  ++|++.|.....|..|+++|.             ++++|.|+  .|+   
T Consensus        18 ~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C~---   81 (190)
T 1tf6_A           18 ADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT-------------GEKNFTCDSDGCD---   81 (190)
T ss_dssp             TTTCCBCSSHHHHHHHHHHHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTT-------------TCCCEECCSSSCC---
T ss_pred             CCCcchhCCHHHHHHHHHhcCCCCCccCCCCCCChhhCCHHHHHHHHHHcc-------------CCCceeCCCCCCC---
Confidence            4677777777778888888888888888  778888888888888888887             77888888  674   


Q ss_pred             CCCCCccCChhhhhhhh-ccc-cCCccccc--cccCCcccChhHHHHHHHH-hCCcceec--C-CCCccCChHHHHHHHH
Q 007898          144 HDPSRALGDLTGIKKHF-CRK-HGEKKWKC--DKCSKRYAVQSDWKAHSKT-CGTREYRC--D-CGTLFSRRDSFITHRA  215 (585)
Q Consensus       144 ~~~~k~F~~~~~L~~H~-r~H-tgekpy~C--~~CgK~F~~~s~L~~H~r~-hgekpy~C--~-Cgk~F~~~s~L~~H~~  215 (585)
                          +.|.....|..|+ +.| .++++|.|  ++|++.|.....|..|+++ +++++|.|  + |++.|..+..|.+|+ 
T Consensus        82 ----~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~-  156 (190)
T 1tf6_A           82 ----LRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE-  156 (190)
T ss_dssp             ----CEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHH-
T ss_pred             ----CccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHH-
Confidence                8888888888888 566 46778888  7788888888888888888 67888888  4 888888888888888 


Q ss_pred             HhhhccccccccccCCCCccCCC---CCCCCCcCCCccccccccc
Q 007898          216 FCDALAEESTRAITGTNPILSSS---SHHQPGIVAGASSHVNLQI  257 (585)
Q Consensus       216 ~h~~~~~~~~r~ht~ekp~~cs~---c~~sf~~~s~l~sH~~~~~  257 (585)
                                ++|++   |.|..   |++.|.....|..|++.++
T Consensus       157 ----------~~H~~---~~C~~~~~C~~~f~~~~~l~~H~~~h~  188 (190)
T 1tf6_A          157 ----------KVHAG---YPCKKDDSCSFVGKTWTLYLKHVAECH  188 (190)
T ss_dssp             ----------TSSCS---CCCCSTTTCCCCCSCHHHHHHHHTTCC
T ss_pred             ----------HHhCC---CcCCCCCcCCCccccHHHHHHHHHhhc
Confidence                      44444   77877   8888888888888877654

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.86  E-value=1.5e-22  Score=193.72  Aligned_cols=140  Identities=21%  Similarity=0.474  Sum_probs=128.9

Q ss_pred             cccCcccc--cccCcccccccccchhcccccCccccccchhhhcccccccc--CCCCcccCCCCCccCChhhhhhhhccc
Q 007898           88 MATNRFVC--EICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVC--PEPNCVHHDPSRALGDLTGIKKHFCRK  163 (585)
Q Consensus        88 ~~~kpy~C--~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C--~~CgC~~~~~~k~F~~~~~L~~H~r~H  163 (585)
                      ...++|.|  ++|++.|.....|..|+++|.             ++++|.|  ++|+       +.|.....|..|+++|
T Consensus         8 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~-------------~~~~~~C~~~~C~-------~~f~~~~~l~~H~~~h   67 (190)
T 1tf6_A            8 VVYKRYICSFADCGAAYNKNWKLQAHLCKHT-------------GEKPFPCKEEGCE-------KGFTSLHHLTRHSLTH   67 (190)
T ss_dssp             --CCCCBCSSTTTCCBCSSHHHHHHHHHHHH-------------CCCSSCCSSTTCC-------CCCSSHHHHHHHHTTT
T ss_pred             CCCcceeCCCCCCcchhCCHHHHHHHHHhcC-------------CCCCccCCCCCCC-------hhhCCHHHHHHHHHHc
Confidence            44789999  789999999999999999998             8999999  8895       9999999999999999


Q ss_pred             cCCcccccc--ccCCcccChhHHHHHHHH-h--CCcceec--C-CCCccCChHHHHHHHHHhhhccccccccccCCCCcc
Q 007898          164 HGEKKWKCD--KCSKRYAVQSDWKAHSKT-C--GTREYRC--D-CGTLFSRRDSFITHRAFCDALAEESTRAITGTNPIL  235 (585)
Q Consensus       164 tgekpy~C~--~CgK~F~~~s~L~~H~r~-h--gekpy~C--~-Cgk~F~~~s~L~~H~~~h~~~~~~~~r~ht~ekp~~  235 (585)
                      +++++|.|+  .|++.|.....|..|++. |  ++++|.|  + |++.|..+..|..|+           ++|++++||.
T Consensus        68 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~-----------~~H~~~~~~~  136 (190)
T 1tf6_A           68 TGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQ-----------FSHTQQLPYE  136 (190)
T ss_dssp             TTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHH-----------GGGSSSCSSB
T ss_pred             cCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHH-----------HHhCCCCCcc
Confidence            999999999  899999999999999955 6  5789999  8 999999999999999           6677899999


Q ss_pred             CCC--CCCCCCcCCCcccccccccC
Q 007898          236 SSS--SHHQPGIVAGASSHVNLQIP  258 (585)
Q Consensus       236 cs~--c~~sf~~~s~l~sH~~~~~~  258 (585)
                      |..  |++.|.....|..|++.+..
T Consensus       137 C~~~~C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A          137 CPHEGCDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             CCSSSCCCBCSSHHHHHHHHTSSCS
T ss_pred             CCCCCCCchhcCHHHHHHHHHHhCC
Confidence            988  99999999999999987753

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.84  E-value=1.2e-21  Score=173.35  Aligned_cols=111  Identities=21%  Similarity=0.506  Sum_probs=103.9

Q ss_pred             cccCcccccccCcccccccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhcc---cc
Q 007898           88 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCR---KH  164 (585)
Q Consensus        88 ~~~kpy~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~---Ht  164 (585)
                      .++++|+|++|++.|.....|..|+++|.             ++++|.|++|+       +.|.....|..|++.   |.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C~-------~~f~~~~~l~~H~~~~~~~~   62 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHT-------------GEKPFECPKCG-------KCYFRKENLLEHEARNCMNR   62 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHS-------------SCCSCBCTTTC-------CBCSSHHHHHHHHHHCCCCS
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCC-------------CCCCeECCCCC-------chhcCHHHHHHHHhhhhcCC
Confidence            45789999999999999999999999998             88999999996       999999999999985   67


Q ss_pred             CCccccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCChHHHHHHHHHhh
Q 007898          165 GEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCD  218 (585)
Q Consensus       165 gekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~~~h~  218 (585)
                      ++++|.|++|++.|.....|..|+++ +++++|.|+ |++.|..+..|++|++.+|
T Consensus        63 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H  118 (124)
T 2dlq_A           63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH  118 (124)
T ss_dssp             CCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             CCCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHHHHHHHHHHHC
Confidence            89999999999999999999999999 799999999 9999999999999997544

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.84  E-value=1.3e-21  Score=172.24  Aligned_cols=110  Identities=28%  Similarity=0.680  Sum_probs=103.9

Q ss_pred             cccCcccccc--cCcccccccccchhcccccCccccccchhhhccccccccC--CCCcccCCCCCccCChhhhhhhhccc
Q 007898           88 MATNRFVCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCP--EPNCVHHDPSRALGDLTGIKKHFCRK  163 (585)
Q Consensus        88 ~~~kpy~C~~--Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~--~CgC~~~~~~k~F~~~~~L~~H~r~H  163 (585)
                      .++++|.|.+  |++.|.....|..|+++|.             ++++|.|+  .|+       +.|.....|..|+++|
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C~-------~~f~~~~~l~~H~~~h   61 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHT-------------GEKPYQCDFKDCE-------RRFSRSDQLKRHQRRH   61 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHH-------------TTCCEECCSTTCC-------CEESSHHHHHHHHHHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhC-------------CCCCccCCCCCCc-------CccCCHHHHHHHHHHc
Confidence            4578999997  9999999999999999998             88999999  685       9999999999999999


Q ss_pred             cCCccccccccCCcccChhHHHHHHHH-hCCcceec--C-CCCccCChHHHHHHHHHh
Q 007898          164 HGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRC--D-CGTLFSRRDSFITHRAFC  217 (585)
Q Consensus       164 tgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C--~-Cgk~F~~~s~L~~H~~~h  217 (585)
                      +++++|.|++|++.|.....|..|+++ +++++|.|  + |++.|..+..|.+|+++|
T Consensus        62 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H  119 (119)
T 2jp9_A           62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH  119 (119)
T ss_dssp             HCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEESSHHHHHHHHHTC
T ss_pred             CCCCCccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccCCHHHHHHHHhcC
Confidence            999999999999999999999999999 79999999  7 999999999999999764

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.84  E-value=3.5e-22  Score=182.15  Aligned_cols=85  Identities=20%  Similarity=0.374  Sum_probs=44.3

Q ss_pred             cccccCcccccccCcccccccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccC
Q 007898           86 TLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHG  165 (585)
Q Consensus        86 ~~~~~kpy~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htg  165 (585)
                      ++.|+++|+|++|++.|.....|..|+++|.             ++++|.|++|+       +.|.....|..|+++|++
T Consensus        16 ~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~-------------~~k~~~C~~C~-------k~F~~~~~L~~H~~~H~~   75 (133)
T 2lt7_A           16 IVDGRVYYICIVCKRSYVCLTSLRRHFNIHS-------------WEKKYPCRYCE-------KVFPLAEYRTKHEIHHTG   75 (133)
T ss_dssp             EETTEEEEEETTTCCEESCHHHHHHHHHHHH-------------CCSCEECSSSS-------CEESSHHHHHHHHHHHHT
T ss_pred             ecCCCcCeECCCCCCCcCCHHHHHHHHHHcC-------------CCCCeeCCccC-------eecccccchhhhccccCC
Confidence            4444555555555555555555555555554             44555555553       555555555555555555


Q ss_pred             CccccccccCCcccChhHHHHHHHH
Q 007898          166 EKKWKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       166 ekpy~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      +++|.|++|++.|..+..|..|+++
T Consensus        76 ~k~~~C~~C~k~F~~~~~L~~H~~~  100 (133)
T 2lt7_A           76 ERRYQCLACGKSFINYQFMSSHIKS  100 (133)
T ss_dssp             CCCEEESSSCCEESSHHHHHHHHHH
T ss_pred             CccccCCCCCCCcCCHHHHHHHhHH
Confidence            5555555555555555555555554

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.83  E-value=5.5e-21  Score=176.59  Aligned_cols=126  Identities=21%  Similarity=0.319  Sum_probs=108.9

Q ss_pred             ccCcccccccCcccccccccchhccc-ccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCc
Q 007898           89 ATNRFVCEICNKGFQRDQNLQLHRRG-HNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEK  167 (585)
Q Consensus        89 ~~kpy~C~~Cgk~F~~~~~L~~H~r~-H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgek  167 (585)
                      +.+.|.|.+|++.|.....|..|++. |......     .....+.|.|++|+       +.|.....|..|+++|++++
T Consensus        22 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~-----~~~~~~~~~C~~C~-------~~f~~~~~l~~H~~~h~~~~   89 (155)
T 2rpc_A           22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQ-----NNHVCYWEECPREG-------KSFKAKYKLVNHIRVHTGEK   89 (155)
T ss_dssp             TCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTC-----SSCCCCBTTCTTSS-------CCCSSHHHHHHHTHHHHCCC
T ss_pred             hhcccccccCCcccCCHHHHHHHHHhhcCCCccc-----CCccccccCCCCcc-------cccCCHHHHHHHHHhcCCCC
Confidence            46789999999999999999999998 5411000     00011238999996       99999999999999999999


Q ss_pred             cccccc--cCCcccChhHHHHHHHH-hCCcceecC---CCCccCChHHHHHHHHHhhhccccccccccCCCCccCC
Q 007898          168 KWKCDK--CSKRYAVQSDWKAHSKT-CGTREYRCD---CGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSS  237 (585)
Q Consensus       168 py~C~~--CgK~F~~~s~L~~H~r~-hgekpy~C~---Cgk~F~~~s~L~~H~~~h~~~~~~~~r~ht~ekp~~cs  237 (585)
                      +|.|.+  |++.|.....|.+|+++ +++++|.|+   |++.|.++..|.+|+           ++|++++||.|+
T Consensus        90 ~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~-----------~~H~~~k~~~c~  154 (155)
T 2rpc_A           90 PFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHM-----------HVHTSDKSGPSS  154 (155)
T ss_dssp             SEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSS-----------TTTTSCCCSCSC
T ss_pred             cccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHH-----------HHhcCCCCCCCC
Confidence            999998  99999999999999999 789999997   999999999999998           778889999986

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.82  E-value=8.4e-21  Score=173.00  Aligned_cols=104  Identities=21%  Similarity=0.346  Sum_probs=95.1

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCCh
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRR  207 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~  207 (585)
                      |+++|+|++|+       +.|.....|..|+++|+++++|+|++|++.|.....|..|+++ .++++|.|+ |++.|..+
T Consensus        19 Gek~y~C~~C~-------k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~   91 (133)
T 2lt7_A           19 GRVYYICIVCK-------RSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINY   91 (133)
T ss_dssp             TEEEEEETTTC-------CEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSH
T ss_pred             CCcCeECCCCC-------CCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCH
Confidence            99999999996       9999999999999999999999999999999999999999999 699999999 99999999


Q ss_pred             HHHHHHHHHhhhccccccccccCCCCccCCCCCCCCCc
Q 007898          208 DSFITHRAFCDALAEESTRAITGTNPILSSSSHHQPGI  245 (585)
Q Consensus       208 s~L~~H~~~h~~~~~~~~r~ht~ekp~~cs~c~~sf~~  245 (585)
                      ..|..|+++|++..     .....++|.|..|++.|..
T Consensus        92 ~~L~~H~~~hh~~~-----p~~~~k~~~C~~C~k~~~~  124 (133)
T 2lt7_A           92 QFMSSHIKSVHSQD-----PSGDSKLYRLHPCRSLQIR  124 (133)
T ss_dssp             HHHHHHHHHHTCCC-----TTSSSCCEEECCCCSSCCC
T ss_pred             HHHHHHhHHhcCCC-----CCCCCCCeecCCCCchhhh
Confidence            99999999888542     2334678999999987654

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.81  E-value=9.3e-21  Score=168.28  Aligned_cols=110  Identities=26%  Similarity=0.574  Sum_probs=99.9

Q ss_pred             ccCccccc--ccCcccccccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCC
Q 007898           89 ATNRFVCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGE  166 (585)
Q Consensus        89 ~~kpy~C~--~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htge  166 (585)
                      ++++|.|+  .|++.|.....|..|+++|              ++++|.|++|+       +.|.....|..|+++|+++
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h--------------~~~~~~C~~C~-------~~f~~~~~l~~H~~~h~~~   60 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH--------------GPRVHVCAECG-------KAFVESSKLKRHQLVHTGE   60 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGGG--------------SCCCEECTTTC-------CEESSHHHHHHHGGGTSCC
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHHc--------------CCCCeECCCCC-------chhCCHHHHHHHHHHcCCC
Confidence            46789999  8999999999999999988              57899999996       9999999999999999999


Q ss_pred             ccccccc--cCCcccChhHHHHHHHH-hCCcceec--C-CCCccCChHHHHHHHHHhhh
Q 007898          167 KKWKCDK--CSKRYAVQSDWKAHSKT-CGTREYRC--D-CGTLFSRRDSFITHRAFCDA  219 (585)
Q Consensus       167 kpy~C~~--CgK~F~~~s~L~~H~r~-hgekpy~C--~-Cgk~F~~~s~L~~H~~~h~~  219 (585)
                      ++|.|.+  |++.|.....|..|+++ +++++|.|  + |++.|..+..|.+|+++|++
T Consensus        61 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~~  119 (124)
T 1ubd_C           61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK  119 (124)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC-
T ss_pred             CCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHHHHHHHHcc
Confidence            9999986  99999999999999999 79999999  5 99999999999999966653

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.80  E-value=2.3e-20  Score=171.96  Aligned_cols=136  Identities=22%  Similarity=0.377  Sum_probs=122.5

Q ss_pred             cccCCCCCCCCCCchhhccCcc---cccccCccccccc-----CcccccccccchhcccccCccccccchhhhccccccc
Q 007898           64 KKKRNLPGNPDPDAEVIALSPK---TLMATNRFVCEIC-----NKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYV  135 (585)
Q Consensus        64 k~k~~~~~~~~~~~~~~~~~~k---~~~~~kpy~C~~C-----gk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~  135 (585)
                      ..++..++..+.....+..|.+   ++.++++|.|++|     ++.|.....|..|+++|.             ++++|.
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~-------------~~~~~~   69 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT-------------GEKPHK   69 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHH-------------CCCCCC
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcC-------------CCCCcc
Confidence            4567778888888888888887   7889999998753     499999999999999998             889999


Q ss_pred             cCC--CCcccCCCCCccCChhhhhhhhccccCCccccccc--cCCcccChhHHHHHH-HH-hCCcceecC---CCCccCC
Q 007898          136 CPE--PNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK--CSKRYAVQSDWKAHS-KT-CGTREYRCD---CGTLFSR  206 (585)
Q Consensus       136 C~~--CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~--CgK~F~~~s~L~~H~-r~-hgekpy~C~---Cgk~F~~  206 (585)
                      |++  |+       +.|.....|..|+++|+++++|+|++  |++.|.....|..|+ ++ .++++|.|+   |++.|..
T Consensus        70 C~~~~C~-------~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~  142 (155)
T 2gli_A           70 CTFEGCR-------KSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTD  142 (155)
T ss_dssp             CCSTTCC-------CCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESS
T ss_pred             CCCCCCC-------CcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCC
Confidence            986  85       99999999999999999999999998  999999999999999 56 588999995   9999999


Q ss_pred             hHHHHHHHHHhhh
Q 007898          207 RDSFITHRAFCDA  219 (585)
Q Consensus       207 ~s~L~~H~~~h~~  219 (585)
                      +..|+.|++.|++
T Consensus       143 ~~~L~~H~~~hhg  155 (155)
T 2gli_A          143 PSSLRKHVKTVHG  155 (155)
T ss_dssp             HHHHHHHHHHSCC
T ss_pred             HHHHHHHHHhhcC
Confidence            9999999988763

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.76  E-value=2.8e-19  Score=158.08  Aligned_cols=110  Identities=25%  Similarity=0.343  Sum_probs=102.1

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHH----hCCcceecC-CCCcc
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT----CGTREYRCD-CGTLF  204 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~----hgekpy~C~-Cgk~F  204 (585)
                      ++++|+|++|+       +.|.....|..|+++|+++++|.|++|++.|.....|..|++.    .++++|.|+ |++.|
T Consensus         4 ~~~~~~C~~C~-------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f   76 (124)
T 2dlq_A            4 GSSGVECPTCH-------KKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETF   76 (124)
T ss_dssp             CCSSCCCTTTC-------CCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEE
T ss_pred             CCCCCCCCCCC-------CcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCcc
Confidence            78899999996       9999999999999999999999999999999999999999985    378999999 99999


Q ss_pred             CChHHHHHHHHHhhhccccccccccCCCCccCCCCCCCCCcCCCccccccccc
Q 007898          205 SRRDSFITHRAFCDALAEESTRAITGTNPILSSSSHHQPGIVAGASSHVNLQI  257 (585)
Q Consensus       205 ~~~s~L~~H~~~h~~~~~~~~r~ht~ekp~~cs~c~~sf~~~s~l~sH~~~~~  257 (585)
                      ..+..|..|++           +|.+++||.|..|++.|.....|..|++..+
T Consensus        77 ~~~~~l~~H~~-----------~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H  118 (124)
T 2dlq_A           77 RRRMELRLHMV-----------SHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH  118 (124)
T ss_dssp             SSHHHHHHHHH-----------HHSSSCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHH-----------HcCCCCCccCCCccchhCCHHHHHHHHHHHC
Confidence            99999999994           4567899999999999999999999987544

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.75  E-value=3e-19  Score=156.97  Aligned_cols=108  Identities=27%  Similarity=0.563  Sum_probs=101.0

Q ss_pred             cccccccCC--CCcccCCCCCccCChhhhhhhhccccCCcccccc--ccCCcccChhHHHHHHHH-hCCcceecC-CCCc
Q 007898          130 RKKVYVCPE--PNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCD--KCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTL  203 (585)
Q Consensus       130 ~~k~y~C~~--CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~--~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~  203 (585)
                      ++++|.|.+  |+       +.|.....|..|+++|.++++|.|.  .|++.|.....|..|+++ +++++|.|+ |++.
T Consensus         3 ~~~~~~C~~~~C~-------~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   75 (119)
T 2jp9_A            3 EKRPFMCAYPGCN-------KRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRK   75 (119)
T ss_dssp             SSCCBCCCSTTSC-------CCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCE
T ss_pred             CCeeeeCCCCCCc-------chhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCch
Confidence            688999997  85       9999999999999999999999999  799999999999999999 799999999 9999


Q ss_pred             cCChHHHHHHHHHhhhccccccccccCCCCccC--CCCCCCCCcCCCccccccc
Q 007898          204 FSRRDSFITHRAFCDALAEESTRAITGTNPILS--SSSHHQPGIVAGASSHVNL  255 (585)
Q Consensus       204 F~~~s~L~~H~~~h~~~~~~~~r~ht~ekp~~c--s~c~~sf~~~s~l~sH~~~  255 (585)
                      |..+..|..|++           +|.++++|.|  ..|++.|.....|..|+++
T Consensus        76 f~~~~~l~~H~~-----------~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~  118 (119)
T 2jp9_A           76 FSRSDHLKTHTR-----------THTGEKPFSCRWPSCQKKFARSDELVRHHNM  118 (119)
T ss_dssp             ESCHHHHHHHHH-----------HHHTCCCEECCSTTCCCEESSHHHHHHHHHT
T ss_pred             hCCHHHHHHHHH-----------HhcCCCCeeCCCCCCccccCCHHHHHHHHhc
Confidence            999999999995           4557899999  8999999999999999865

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.70  E-value=9.5e-18  Score=148.75  Aligned_cols=109  Identities=23%  Similarity=0.480  Sum_probs=98.3

Q ss_pred             cccccccC--CCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC---CCCc
Q 007898          130 RKKVYVCP--EPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD---CGTL  203 (585)
Q Consensus       130 ~~k~y~C~--~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~---Cgk~  203 (585)
                      .+++|.|+  .|+       +.|.....|..|+++| ++++|.|.+|++.|.....|..|+++ +++++|.|.   |++.
T Consensus         2 ~~~~~~C~~~~C~-------~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~   73 (124)
T 1ubd_C            2 EPRTIACPHKGCT-------KMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKR   73 (124)
T ss_dssp             ---CEECCSTTCC-------CEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCE
T ss_pred             CCCcccCCCCCCc-------CccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCc
Confidence            46789999  785       9999999999999999 89999999999999999999999999 789999994   9999


Q ss_pred             cCChHHHHHHHHHhhhccccccccccCCCCccCC--CCCCCCCcCCCccccccccc
Q 007898          204 FSRRDSFITHRAFCDALAEESTRAITGTNPILSS--SSHHQPGIVAGASSHVNLQI  257 (585)
Q Consensus       204 F~~~s~L~~H~~~h~~~~~~~~r~ht~ekp~~cs--~c~~sf~~~s~l~sH~~~~~  257 (585)
                      |.....|..|+++           |.++++|.|.  .|++.|.....|..|++.+.
T Consensus        74 f~~~~~l~~H~~~-----------h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~H~  118 (124)
T 1ubd_C           74 FSLDFNLRTHVRI-----------HTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA  118 (124)
T ss_dssp             ESCHHHHHHHHHH-----------HHCCCCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             cCCHHHHHHHHHH-----------hCCCCceECCCCCCCCccCCHHHHHHHHHHHc
Confidence            9999999999954           5578999995  59999999999999998765

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.70  E-value=1.3e-17  Score=144.01  Aligned_cols=89  Identities=24%  Similarity=0.535  Sum_probs=60.5

Q ss_pred             cCcccccccCcccccccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccc
Q 007898           90 TNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKW  169 (585)
Q Consensus        90 ~kpy~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy  169 (585)
                      +++|.|.+|++.|.....|..|+++|.             ++++|.|++|+       +.|.....|..|+++|+++++|
T Consensus        15 ~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C~-------~~f~~~~~l~~H~~~h~~~~~~   74 (106)
T 2ee8_A           15 KKEFICKFCGRHFTKSYNLLIHERTHT-------------DERPYTCDICH-------KAFRRQDHLRDHRYIHSKEKPF   74 (106)
T ss_dssp             CCCCBCSSSCCBCSSHHHHHHHHHHHC-------------CSCCCBCSSSC-------CBCSCHHHHHHHGGGSCCCCTT
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHHcC-------------CCCCcCCCCcc-------chhCCHHHHHHHHHHhCCCCCe
Confidence            556777777777777777777766666             56667777764       6677777777777777766677


Q ss_pred             cccccCCcccChhHHHHHHHH-hCCcceec
Q 007898          170 KCDKCSKRYAVQSDWKAHSKT-CGTREYRC  198 (585)
Q Consensus       170 ~C~~CgK~F~~~s~L~~H~r~-hgekpy~C  198 (585)
                      +|.+|++.|.....|..|+++ +++++|.+
T Consensus        75 ~C~~C~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           75 KCQECGKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             SCSSSCCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             ECCCcCCcccCHHHHHHHHHHhCCCCCCcC
Confidence            777777777777777777666 56666543

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.69  E-value=1.1e-17  Score=154.26  Aligned_cols=120  Identities=20%  Similarity=0.298  Sum_probs=110.0

Q ss_pred             CCcccccCCCCCCCCCCchhhccCccc-ccccCc--------ccccccCcccccccccchhcccccCccccccchhhhcc
Q 007898           60 QPPAKKKRNLPGNPDPDAEVIALSPKT-LMATNR--------FVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIR  130 (585)
Q Consensus        60 ~~p~k~k~~~~~~~~~~~~~~~~~~k~-~~~~kp--------y~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~  130 (585)
                      +......+..++..+.....+..|.+. |.++++        |.|.+|++.|.....|..|+++|.             +
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~   87 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT-------------G   87 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHH-------------C
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcC-------------C
Confidence            445678899999999999999999887 776655        899999999999999999999998             8


Q ss_pred             ccccccCC--CCcccCCCCCccCChhhhhhhhccccCCccccccc--cCCcccChhHHHHHHHH-hCCcceecC
Q 007898          131 KKVYVCPE--PNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK--CSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       131 ~k~y~C~~--CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~--CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      +++|.|++  |+       +.|.....|..|+++|+++++|+|.+  |++.|.....|.+|+++ +++++|.|.
T Consensus        88 ~~~~~C~~~~C~-------~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A           88 EKPFPCPFPGCG-------KIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             CCSEECSCTTTC-------CEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             CCcccCCcCCCC-------CccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            89999998  85       99999999999999999999999997  99999999999999999 799999985

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.68  E-value=4.7e-17  Score=140.39  Aligned_cols=89  Identities=20%  Similarity=0.437  Sum_probs=82.5

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCCh
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRR  207 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~  207 (585)
                      .+++|.|++|+       +.|.....|..|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |++.|..+
T Consensus        14 ~~~~~~C~~C~-------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~   86 (106)
T 2ee8_A           14 TKKEFICKFCG-------RHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQS   86 (106)
T ss_dssp             CCCCCBCSSSC-------CBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSH
T ss_pred             CCcCeECCCCC-------CccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCH
Confidence            67899999996       9999999999999999999999999999999999999999999 789999999 99999999


Q ss_pred             HHHHHHHHHhhhccccccccccCCCCccC
Q 007898          208 DSFITHRAFCDALAEESTRAITGTNPILS  236 (585)
Q Consensus       208 s~L~~H~~~h~~~~~~~~r~ht~ekp~~c  236 (585)
                      ..|.+|+           ++|.++++|.+
T Consensus        87 ~~L~~H~-----------~~H~~~~~~~~  104 (106)
T 2ee8_A           87 RTLAVHK-----------TLHMQTSSPTA  104 (106)
T ss_dssp             HHHHHHH-----------HHTTSCCCCCC
T ss_pred             HHHHHHH-----------HHhCCCCCCcC
Confidence            9999999           45556777764

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.67  E-value=2.7e-17  Score=139.15  Aligned_cols=82  Identities=18%  Similarity=0.338  Sum_probs=60.7

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCCh
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRR  207 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~  207 (585)
                      ++++|.|++|+       +.|.....|..|+++|+++++|.|.+|++.|.....|..|+++ +++++|.|. |++.|..+
T Consensus         5 ~~~~~~C~~C~-------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~   77 (96)
T 2dmd_A            5 SSGPHKCEVCG-------KCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNS   77 (96)
T ss_dssp             CCCCCCBTTTT-------BCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSH
T ss_pred             CCcCeECCCCC-------CccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCH
Confidence            56677777774       7777777777777777777777777777777777777777777 577777777 77777777


Q ss_pred             HHHHHHHHHhh
Q 007898          208 DSFITHRAFCD  218 (585)
Q Consensus       208 s~L~~H~~~h~  218 (585)
                      ..|..|+++|+
T Consensus        78 ~~l~~H~~~h~   88 (96)
T 2dmd_A           78 SQLTVHLRSHT   88 (96)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHHHHhc
Confidence            77777774443

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=4.1e-17  Score=142.99  Aligned_cols=98  Identities=14%  Similarity=0.225  Sum_probs=66.5

Q ss_pred             hccCcccccccCcccccccCcccccccccchhccc--ccCccccccchhhhcccccc-ccCCCCcccCCCCCcc--CChh
Q 007898           80 IALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRG--HNLPWKLKQRTSKEIRKKVY-VCPEPNCVHHDPSRAL--GDLT  154 (585)
Q Consensus        80 ~~~~~k~~~~~kpy~C~~Cgk~F~~~~~L~~H~r~--H~~~~~~~~~~~~~~~~k~y-~C~~CgC~~~~~~k~F--~~~~  154 (585)
                      +..|.++|.++++|+|++|++.|.....|..|+++  |.             +++++ .|++|+       +.|  ....
T Consensus         7 l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~-------------~~~~~~~C~~C~-------~~f~f~~~~   66 (115)
T 2dmi_A            7 GKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHY-------------RDDNHETDNNNP-------KRWSKPRKR   66 (115)
T ss_dssp             CCCCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCC-------------BCSCCCCCCCCC-------SCCSSCCCC
T ss_pred             hhhheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCcc-------------ccCCCccCCCCC-------cccccccHH
Confidence            45566677777777777777777777777777766  43             44443 377775       555  6677


Q ss_pred             hhhhhhccccCCccccccccCCcccChhHHHHHHHH-hCCccee
Q 007898          155 GIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYR  197 (585)
Q Consensus       155 ~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~  197 (585)
                      .|..|+++|+++++|+|++|++.|.....|.+|+++ |......
T Consensus        67 ~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~~~~~  110 (115)
T 2dmi_A           67 SLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVS  110 (115)
T ss_dssp             CCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTTTCSC
T ss_pred             HHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCCcccCC
Confidence            777777777777777777777777777777777777 4444333

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.66  E-value=3.2e-17  Score=142.11  Aligned_cols=93  Identities=16%  Similarity=0.198  Sum_probs=55.2

Q ss_pred             cccccccCcccccccCcccccccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccc
Q 007898           84 PKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRK  163 (585)
Q Consensus        84 ~k~~~~~kpy~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~H  163 (585)
                      .+++.++++|+|.+|++.|.....|..|+++|.               ++|.|++|+       +.|.....|..|++ |
T Consensus         8 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~---------------~~~~C~~C~-------~~f~~~~~l~~H~~-H   64 (107)
T 1wjp_A            8 ASPVENKEVYQCRLCNAKLSSLLEQGSHERLCR---------------NAAVCPYCS-------LRFFSPELKQEHES-K   64 (107)
T ss_dssp             CCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHHH---------------HSBCCTTTC-------CCBSSHHHHHHHHH-H
T ss_pred             CcccCCCcCeECCCCCCccCCHHHHHHHHHHCC---------------CCccCCCCC-------CccCCHHHHHHHHH-c
Confidence            344555666666666666666666666665542               356666663       66666666666664 6


Q ss_pred             cCCccccccccCCcccChhHHHHHHH-H-hCCcceecC
Q 007898          164 HGEKKWKCDKCSKRYAVQSDWKAHSK-T-CGTREYRCD  199 (585)
Q Consensus       164 tgekpy~C~~CgK~F~~~s~L~~H~r-~-hgekpy~C~  199 (585)
                      +++++|+|++|++.|.....|.+|++ + .++++|.|.
T Consensus        65 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           65 CEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             CSTGGGEEGGGTEECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             CCCCCccCccccchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            66666666666666666666666665 3 355555553

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.66  E-value=1.5e-16  Score=134.51  Aligned_cols=87  Identities=16%  Similarity=0.321  Sum_probs=79.8

Q ss_pred             ccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCChHHHHHHHHHhhhccccccccccCCCCccCCCCC
Q 007898          163 KHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSSSSH  240 (585)
Q Consensus       163 Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~~~h~~~~~~~~r~ht~ekp~~cs~c~  240 (585)
                      +.++++|+|.+|++.|.....|..|+++ +++++|.|+ |++.|..+..|.+|++           +|.++++|.|..|+
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~-----------~h~~~~~~~C~~C~   71 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-----------IHSDERPFKCQICP   71 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHH-----------HSCCCCCEECSSSS
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHH-----------HhCCCCCccCCCCC
Confidence            4678999999999999999999999999 789999999 9999999999999994           55678999999999


Q ss_pred             CCCCcCCCcccccccccCCC
Q 007898          241 HQPGIVAGASSHVNLQIPQF  260 (585)
Q Consensus       241 ~sf~~~s~l~sH~~~~~~~~  260 (585)
                      +.|.....|..|++.+....
T Consensus        72 ~~f~~~~~l~~H~~~h~~~~   91 (96)
T 2dmd_A           72 YASRNSSQLTVHLRSHTGDS   91 (96)
T ss_dssp             CEESSHHHHHHHHTTCCSCC
T ss_pred             CccCCHHHHHHHHHHhcCCC
Confidence            99999999999999876543

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=1.9e-17  Score=145.13  Aligned_cols=97  Identities=12%  Similarity=0.197  Sum_probs=88.1

Q ss_pred             cccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhcc--ccCCcccc-ccccCCcc--
Q 007898          104 RDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCR--KHGEKKWK-CDKCSKRY--  178 (585)
Q Consensus       104 ~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~--Htgekpy~-C~~CgK~F--  178 (585)
                      ....|..|+++|+             ++++|.|++|+       +.|.....|..|+++  |.+++++. |.+|++.|  
T Consensus         3 s~~~l~~H~~~H~-------------~~~~~~C~~C~-------k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f   62 (115)
T 2dmi_A            3 SGSSGKLYGSIFT-------------GASKFRCKDCS-------AAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK   62 (115)
T ss_dssp             CCCCCCCCCCCCC-------------CCCSEEBSSSS-------CEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSS
T ss_pred             cchhhhhheeeeC-------------CCCCEECCccC-------chhcCHHHHHHHHHHhCccccCCCccCCCCCccccc
Confidence            3567999999998             89999999996       999999999999999  88887765 99999999  


Q ss_pred             cChhHHHHHHHH-hCCcceecC-CCCccCChHHHHHHHHHhhhc
Q 007898          179 AVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDAL  220 (585)
Q Consensus       179 ~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~~~h~~~  220 (585)
                      .....|..|+++ +++++|.|+ |++.|..+..|.+|++.|+..
T Consensus        63 ~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~hh~~  106 (115)
T 2dmi_A           63 PRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHY  106 (115)
T ss_dssp             CCCCCCCCCCCSCCCCSSCBCSSSCCBCSSHHHHHHHHHHTTTT
T ss_pred             ccHHHHHHHhhccCCCcceECCCCCCccCCHHHHHHHHHHhCCc
Confidence            999999999999 789999999 999999999999999887644

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.65  E-value=1.3e-16  Score=138.35  Aligned_cols=90  Identities=23%  Similarity=0.304  Sum_probs=81.8

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHHhCCcceecC-CCCccCChH
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSRRD  208 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~hgekpy~C~-Cgk~F~~~s  208 (585)
                      ++++|.|++|+       +.|.....|..|+++|  +++|+|.+|++.|.....|..|++-+++++|.|+ |++.|..+.
T Consensus        13 ~~~~~~C~~C~-------~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H~~H~~~~~~~C~~C~~~f~~~~   83 (107)
T 1wjp_A           13 NKEVYQCRLCN-------AKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCLECMRTFKSSF   83 (107)
T ss_dssp             CCCCCBCTTTC-------CBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHHHHHCSTGGGEEGGGTEECSSHH
T ss_pred             CCcCeECCCCC-------CccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHHHHcCCCCCccCccccchhCCHH
Confidence            89999999996       9999999999999999  4799999999999999999999953689999999 999999999


Q ss_pred             HHHHHHHHhhhccccccccccCCCCccCCC
Q 007898          209 SFITHRAFCDALAEESTRAITGTNPILSSS  238 (585)
Q Consensus       209 ~L~~H~~~h~~~~~~~~r~ht~ekp~~cs~  238 (585)
                      .|++|++          .+|+++++|.|+.
T Consensus        84 ~L~~H~~----------~~H~~~~~~~~~~  103 (107)
T 1wjp_A           84 SIWRHQV----------EVHNQNNMAPTSG  103 (107)
T ss_dssp             HHHHHHH----------HTSCCCCCCCCCC
T ss_pred             HHHHHHH----------HHcCCCCCCCCCC
Confidence            9999994          2677888988753

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.64  E-value=1.6e-16  Score=130.11  Aligned_cols=79  Identities=24%  Similarity=0.542  Sum_probs=75.8

Q ss_pred             ccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCChHHH
Q 007898          133 VYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSF  210 (585)
Q Consensus       133 ~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L  210 (585)
                      +|.|++|+       +.|.....|..|+++|.++++|.|.+|++.|.....|..|+++ +++++|.|+ |++.|..+..|
T Consensus         1 ~~~C~~C~-------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l   73 (82)
T 2kmk_A            1 SFDCKICG-------KSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNL   73 (82)
T ss_dssp             CEECSSSC-------CEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHH
T ss_pred             CccCCCCc-------ccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHH
Confidence            58999996       9999999999999999999999999999999999999999999 899999999 99999999999


Q ss_pred             HHHHHHhh
Q 007898          211 ITHRAFCD  218 (585)
Q Consensus       211 ~~H~~~h~  218 (585)
                      .+|+++|+
T Consensus        74 ~~H~~~H~   81 (82)
T 2kmk_A           74 ITHSRKHT   81 (82)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhhC
Confidence            99998875

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=2.5e-16  Score=136.84  Aligned_cols=87  Identities=25%  Similarity=0.575  Sum_probs=82.0

Q ss_pred             ccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCC
Q 007898          129 IRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSR  206 (585)
Q Consensus       129 ~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~  206 (585)
                      .++++|.| +|+       +.|.....|..|+++|+++++|+|.+|++.|.....|..|+++ +++++|.|+ |++.|..
T Consensus         6 ~~~k~~~C-~C~-------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~   77 (110)
T 2csh_A            6 SGDKLYPC-QCG-------KSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMW   77 (110)
T ss_dssp             CCCCCEEC-TTS-------CEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESC
T ss_pred             CCCCCEec-cCC-------CccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcC
Confidence            38999999 896       9999999999999999999999999999999999999999999 799999999 9999999


Q ss_pred             hHHHHHHHHHhhhcccc
Q 007898          207 RDSFITHRAFCDALAEE  223 (585)
Q Consensus       207 ~s~L~~H~~~h~~~~~~  223 (585)
                      +..|.+|++.|+.....
T Consensus        78 ~~~l~~H~~~~~~~~~~   94 (110)
T 2csh_A           78 RDSFHRHVTSCTKSYEA   94 (110)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccccccc
Confidence            99999999999876544

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.63  E-value=2.6e-16  Score=131.26  Aligned_cols=83  Identities=24%  Similarity=0.602  Sum_probs=76.3

Q ss_pred             cccccccC--CCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccC
Q 007898          130 RKKVYVCP--EPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFS  205 (585)
Q Consensus       130 ~~k~y~C~--~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~  205 (585)
                      ++++|.|+  .|+       +.|.....|..|+++|.++++|.|.+|++.|.....|..|+++ +++++|.|. |++.|.
T Consensus         1 ~~k~~~C~~~~C~-------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   73 (90)
T 1a1h_A            1 MERPYACPVESCD-------RRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA   73 (90)
T ss_dssp             --CCEECCSSSCC-------CEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred             CCCceECCCCCCC-------CccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhC
Confidence            36899998  585       9999999999999999999999999999999999999999999 799999999 999999


Q ss_pred             ChHHHHHHHHHhhh
Q 007898          206 RRDSFITHRAFCDA  219 (585)
Q Consensus       206 ~~s~L~~H~~~h~~  219 (585)
                      .+..|.+|+++|++
T Consensus        74 ~~~~l~~H~~~H~~   87 (90)
T 1a1h_A           74 RSDERKRHTKIHLR   87 (90)
T ss_dssp             SHHHHHHHHGGGGC
T ss_pred             CHHHHHHHHHHhcc
Confidence            99999999966553

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.62  E-value=2e-16  Score=133.49  Aligned_cols=79  Identities=25%  Similarity=0.519  Sum_probs=59.2

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHH-hCC--cceecC-CCCccC
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGT--REYRCD-CGTLFS  205 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hge--kpy~C~-Cgk~F~  205 (585)
                      ++++|.|++|+       +.|.....|..|+++|+++++|+|.+|++.|.....|..|+++ +++  ++|.|. |++.|.
T Consensus         4 ~~~~~~C~~C~-------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~   76 (95)
T 2yt9_A            4 GSSGVACEICG-------KIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFS   76 (95)
T ss_dssp             CCSCEECSSSC-------CEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBS
T ss_pred             CCCCeECCCCC-------CccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhC
Confidence            56777777774       7777777777777777777777777777777777777777777 454  777777 777777


Q ss_pred             ChHHHHHHHH
Q 007898          206 RRDSFITHRA  215 (585)
Q Consensus       206 ~~s~L~~H~~  215 (585)
                      ++..|..|++
T Consensus        77 ~~~~L~~H~~   86 (95)
T 2yt9_A           77 RPDHLNGHIK   86 (95)
T ss_dssp             SHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            7777777764

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.62  E-value=8.7e-17  Score=134.19  Aligned_cols=86  Identities=24%  Similarity=0.529  Sum_probs=78.7

Q ss_pred             ccCccccc--ccCcccccccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCC
Q 007898           89 ATNRFVCE--ICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGE  166 (585)
Q Consensus        89 ~~kpy~C~--~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htge  166 (585)
                      ++++|.|.  .|++.|.....|..|+++|.             ++++|.|++|+       +.|.....|..|+++|+++
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C~-------~~f~~~~~l~~H~~~h~~~   60 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHT-------------GQKPFQCRICM-------RNFSRSDHLTTHIRTHTGE   60 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHH-------------CCCCEECTTTC-------CEESCHHHHHHHHHHHHCC
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhC-------------CCCCccCCCCC-------cccCCHHHHHHHHHHcCCC
Confidence            36899998  69999999999999999998             88999999996       9999999999999999999


Q ss_pred             ccccccccCCcccChhHHHHHHHH-hCCc
Q 007898          167 KKWKCDKCSKRYAVQSDWKAHSKT-CGTR  194 (585)
Q Consensus       167 kpy~C~~CgK~F~~~s~L~~H~r~-hgek  194 (585)
                      ++|.|.+|++.|.....|..|+++ ++++
T Consensus        61 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           61 KPFACDICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHGGGGC--
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcccC
Confidence            999999999999999999999999 6665

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.62  E-value=1.7e-16  Score=138.00  Aligned_cols=84  Identities=19%  Similarity=0.387  Sum_probs=80.7

Q ss_pred             cccccCcccccccCcccccccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccC
Q 007898           86 TLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHG  165 (585)
Q Consensus        86 ~~~~~kpy~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htg  165 (585)
                      .|+++++|.| +|++.|.....|..|++.|.             ++++|.|++|+       +.|.....|..|+++|++
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C~-------~~f~~~~~l~~H~~~h~~   62 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRHMSMHL-------------GLRPYGCGVCG-------KKFKMKHHLVGHMKIHTG   62 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHHHHHHS-------------CCCSEECTTTS-------CEESSSHHHHHHHTTTCC
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHHHHHcC-------------CCcCccCCCCC-------cccCCHHHHHHHHHHcCC
Confidence            5778999999 99999999999999999998             88999999996       999999999999999999


Q ss_pred             CccccccccCCcccChhHHHHHHHH
Q 007898          166 EKKWKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       166 ekpy~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      +++|+|.+|++.|.....|.+|+++
T Consensus        63 ~~~~~C~~C~~~f~~~~~l~~H~~~   87 (110)
T 2csh_A           63 IKPYECNICAKRFMWRDSFHRHVTS   87 (110)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCeeCCCCcchhcCHHHHHHHHHH
Confidence            9999999999999999999999998

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.61  E-value=6.4e-16  Score=130.36  Aligned_cols=83  Identities=22%  Similarity=0.395  Sum_probs=75.1

Q ss_pred             cCCccccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCChHHHHHHHHHhhhccccccccccCCCCccCCCCCC
Q 007898          164 HGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSSSSHH  241 (585)
Q Consensus       164 tgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~~~h~~~~~~~~r~ht~ekp~~cs~c~~  241 (585)
                      .++++|+|.+|++.|.....|..|+++ +++++|.|+ |++.|..+..|..|++.|+..         .+++|.|..|++
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~---------~~~~~~C~~C~~   73 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS---------VGKPYICQSCGK   73 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCC---------CCSSBCCSSSCC
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCC---------CCCceECCCccc
Confidence            478999999999999999999999999 789999999 999999999999999665432         138999999999


Q ss_pred             CCCcCCCccccccc
Q 007898          242 QPGIVAGASSHVNL  255 (585)
Q Consensus       242 sf~~~s~l~sH~~~  255 (585)
                      .|.....|..|++.
T Consensus        74 ~f~~~~~L~~H~~~   87 (95)
T 2yt9_A           74 GFSRPDHLNGHIKQ   87 (95)
T ss_dssp             CBSSHHHHHHHHHH
T ss_pred             hhCCHHHHHHHHHH
Confidence            99999999999863

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.60  E-value=1.6e-16  Score=130.00  Aligned_cols=80  Identities=31%  Similarity=0.584  Sum_probs=76.9

Q ss_pred             cccccccCcccccccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccc
Q 007898           92 RFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKC  171 (585)
Q Consensus        92 py~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C  171 (585)
                      +|.|.+|++.|.....|..|+++|.             ++++|.|++|+       +.|.....|..|+++|+++++|+|
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C~-------~~f~~~~~l~~H~~~h~~~~~~~C   60 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHS-------------DTRPYPCQYCG-------KRFHQKSDMKKHTFIHTGEKPHKC   60 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHH-------------TCCCEECSSSC-------CEESSHHHHHHHHHHHHTCCCEEC
T ss_pred             CccCCCCcccccCchhHHHHHHHcC-------------CCCCeeCCcCC-------hhhCCHHHHHHHHHHhcCCCCCcC
Confidence            6899999999999999999999998             88999999996       999999999999999999999999


Q ss_pred             cccCCcccChhHHHHHHHHh
Q 007898          172 DKCSKRYAVQSDWKAHSKTC  191 (585)
Q Consensus       172 ~~CgK~F~~~s~L~~H~r~h  191 (585)
                      .+|++.|.....|..|+++|
T Consensus        61 ~~C~~~f~~~~~l~~H~~~H   80 (82)
T 2kmk_A           61 QVCGKAFSQSSNLITHSRKH   80 (82)
T ss_dssp             TTTSCEESSHHHHHHHHHHH
T ss_pred             CCcchhhCChHHHHHHHHhh
Confidence            99999999999999999984

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.56  E-value=3.1e-16  Score=131.14  Aligned_cols=84  Identities=21%  Similarity=0.316  Sum_probs=78.8

Q ss_pred             ccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHHhCCcceecC-CCCccCChHH
Q 007898          131 KKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSRRDS  209 (585)
Q Consensus       131 ~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~hgekpy~C~-Cgk~F~~~s~  209 (585)
                      +++|.|++|+       +.|.....|..|+++|+++++|.|++|++.|.....|..|++++..++|.|+ |++.|..+..
T Consensus         1 ek~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~~~   73 (88)
T 1llm_C            1 MKPFQCRICM-------RNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYH   73 (88)
T ss_dssp             CCCEECTTTC-------CEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCC-------CccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhh
Confidence            4799999996       9999999999999999999999999999999999999999999556999999 9999999999


Q ss_pred             HHHHHHHhhhcc
Q 007898          210 FITHRAFCDALA  221 (585)
Q Consensus       210 L~~H~~~h~~~~  221 (585)
                      |..|++.++...
T Consensus        74 L~~H~~~~h~~~   85 (88)
T 1llm_C           74 LENEVARLKKLV   85 (88)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHh
Confidence            999998887664

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.54  E-value=5.6e-15  Score=125.58  Aligned_cols=82  Identities=24%  Similarity=0.564  Sum_probs=77.2

Q ss_pred             cccccccCC--CCcccCCCCCccCChhhhhhhhccccCCcccccc--ccCCcccChhHHHHHHHH-hCCcceecC-CCCc
Q 007898          130 RKKVYVCPE--PNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCD--KCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTL  203 (585)
Q Consensus       130 ~~k~y~C~~--CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~--~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~  203 (585)
                      ..++|.|.+  |+       +.|.....|..|+++|+++++|.|.  .|++.|.....|..|+++ +++++|.|+ |++.
T Consensus        12 ~~~~~~C~~~~C~-------~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   84 (100)
T 2ebt_A           12 KRRIHYCDYPGCT-------KVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRS   84 (100)
T ss_dssp             SCCCEECCSSSCC-------CEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCB
T ss_pred             cCcceEcCCCCCC-------CcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCc
Confidence            678999997  85       9999999999999999999999996  699999999999999999 799999999 9999


Q ss_pred             cCChHHHHHHHHHhh
Q 007898          204 FSRRDSFITHRAFCD  218 (585)
Q Consensus       204 F~~~s~L~~H~~~h~  218 (585)
                      |..+..|..|+++|.
T Consensus        85 f~~~~~l~~H~~~H~   99 (100)
T 2ebt_A           85 FSRSDHLALHMKRHQ   99 (100)
T ss_dssp             CSSHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHhC
Confidence            999999999998875

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.52  E-value=8.1e-15  Score=121.85  Aligned_cols=81  Identities=26%  Similarity=0.555  Sum_probs=75.5

Q ss_pred             cccccccCC--CCcccCCCCCccCChhhhhhhhccccCCcccccc--ccCCcccChhHHHHHHHH-hCCcceecC-CCCc
Q 007898          130 RKKVYVCPE--PNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCD--KCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTL  203 (585)
Q Consensus       130 ~~k~y~C~~--CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~--~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~  203 (585)
                      +.+.|.|++  |+       +.|.....|..|+++|+++++|.|.  .|++.|.....|..|+++ +++++|.|+ |++.
T Consensus         2 ~~~~~~C~~~~C~-------~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~   74 (89)
T 2wbs_A            2 RTATHTCDYAGCG-------KTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRA   74 (89)
T ss_dssp             -CCCEECCSTTTC-------CEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCE
T ss_pred             CCCCeeCCCCCCC-------CcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcc
Confidence            457899999  85       9999999999999999999999997  599999999999999999 799999999 9999


Q ss_pred             cCChHHHHHHHHHh
Q 007898          204 FSRRDSFITHRAFC  217 (585)
Q Consensus       204 F~~~s~L~~H~~~h  217 (585)
                      |..+..|..|+++|
T Consensus        75 f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           75 FSRSDHLALHMKRH   88 (89)
T ss_dssp             ESSHHHHHHHGGGG
T ss_pred             cCCHHHHHHHHHhh
Confidence            99999999999765

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.52  E-value=4.7e-15  Score=126.01  Aligned_cols=83  Identities=20%  Similarity=0.523  Sum_probs=78.0

Q ss_pred             ccCcccccc--cCcccccccccchhcccccCccccccchhhhccccccccC--CCCcccCCCCCccCChhhhhhhhcccc
Q 007898           89 ATNRFVCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCP--EPNCVHHDPSRALGDLTGIKKHFCRKH  164 (585)
Q Consensus        89 ~~kpy~C~~--Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~--~CgC~~~~~~k~F~~~~~L~~H~r~Ht  164 (585)
                      .+++|.|.+  |++.|.....|..|+++|.             ++++|.|+  .|+       +.|.....|..|+++|+
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C~-------~~f~~~~~l~~H~~~h~   71 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHT-------------GEKPYKCTWEGCD-------WRFARSDELTRHYRKHT   71 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHS-------------CCCCEECCSSSCC-------CEESSHHHHHHHHHHHT
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhC-------------CCCCeeCCCCCCC-------CccCCHHHHHHHHHHhC
Confidence            367899997  9999999999999999998             88999997  585       99999999999999999


Q ss_pred             CCccccccccCCcccChhHHHHHHHHh
Q 007898          165 GEKKWKCDKCSKRYAVQSDWKAHSKTC  191 (585)
Q Consensus       165 gekpy~C~~CgK~F~~~s~L~~H~r~h  191 (585)
                      ++++|+|.+|++.|.....|..|+++|
T Consensus        72 ~~~~~~C~~C~~~f~~~~~l~~H~~~H   98 (100)
T 2ebt_A           72 GAKPFQCGVCNRSFSRSDHLALHMKRH   98 (100)
T ss_dssp             SCCSCBCSSSCCBCSSHHHHHHHHHHH
T ss_pred             CCCCeECCCCcCccCCHHHHHHHHHHh
Confidence            999999999999999999999999985

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.52  E-value=1.6e-14  Score=119.30  Aligned_cols=78  Identities=22%  Similarity=0.456  Sum_probs=70.9

Q ss_pred             hhhhhhccccCCccccccccCCcccChhHHHHHHHH-hCC----cceecC-CCCccCChHHHHHHHHHhhhccccccccc
Q 007898          155 GIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGT----REYRCD-CGTLFSRRDSFITHRAFCDALAEESTRAI  228 (585)
Q Consensus       155 ~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hge----kpy~C~-Cgk~F~~~s~L~~H~~~h~~~~~~~~r~h  228 (585)
                      .|.+|+++|+++++|.|.+|++.|.....|.+|+++ +.+    ++|.|+ |++.|..+..|..|+           ++|
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~-----------~~h   70 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA-----------DNC   70 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHH-----------HHC
T ss_pred             CcccccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHH-----------HHc
Confidence            477899999999999999999999999999999988 654    789999 999999999999999           567


Q ss_pred             cCCCCccCCCCCCCC
Q 007898          229 TGTNPILSSSSHHQP  243 (585)
Q Consensus       229 t~ekp~~cs~c~~sf  243 (585)
                      .+++++.|..|+.++
T Consensus        71 ~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           71 AGPDGVEGENSGPSS   85 (86)
T ss_dssp             CCCCSCCCCCCCCCC
T ss_pred             cCCCCcccCCCCCCC
Confidence            789999999998765

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.51  E-value=4.2e-15  Score=123.60  Aligned_cols=82  Identities=22%  Similarity=0.570  Sum_probs=77.5

Q ss_pred             cCcccccc--cCcccccccccchhcccccCccccccchhhhccccccccC--CCCcccCCCCCccCChhhhhhhhccccC
Q 007898           90 TNRFVCEI--CNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCP--EPNCVHHDPSRALGDLTGIKKHFCRKHG  165 (585)
Q Consensus        90 ~kpy~C~~--Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~--~CgC~~~~~~k~F~~~~~L~~H~r~Htg  165 (585)
                      .++|.|.+  |++.|.....|..|+++|.             ++++|.|+  .|+       +.|.....|..|+++|++
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~~~C~-------~~f~~~~~l~~H~~~h~~   62 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHT-------------GEKPYHCDWDGCG-------WKFARSDELTRHYRKHTG   62 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSC-------------SSCCEECCSTTTC-------CEESSHHHHHHHHHHHHC
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcC-------------CCCCcCCCCCCCC-------CccCCHHHHHHHHHHcCC
Confidence            57899999  9999999999999999998             88999997  585       999999999999999999


Q ss_pred             CccccccccCCcccChhHHHHHHHHh
Q 007898          166 EKKWKCDKCSKRYAVQSDWKAHSKTC  191 (585)
Q Consensus       166 ekpy~C~~CgK~F~~~s~L~~H~r~h  191 (585)
                      +++|+|.+|++.|.....|..|+++|
T Consensus        63 ~~~~~C~~C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           63 HRPFQCQKCDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHGGGG
T ss_pred             CCCccCCCCCcccCCHHHHHHHHHhh
Confidence            99999999999999999999999874

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.51  E-value=1.4e-15  Score=136.05  Aligned_cols=120  Identities=14%  Similarity=0.216  Sum_probs=89.5

Q ss_pred             cccccCcccccccCcccccccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccC
Q 007898           86 TLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHG  165 (585)
Q Consensus        86 ~~~~~kpy~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htg  165 (585)
                      ++.+.++|.|..++..  ....+..|.+.+..          ....+.+.|++|+..+. +.+.|.....|..|+ .|++
T Consensus         6 ~~~~~k~~~~~~k~~~--~~~s~ee~~~~~~l----------~~~~~~~~c~~~~~~~~-~~~~~~~~~~l~~h~-~h~~   71 (129)
T 2wbt_A            6 VDSGSKKYLSNHKGIF--IHVTLEELKRYHQL----------TPEQKRLIRAIVKTLIH-NPQLLDESSYLYRLL-ASKA   71 (129)
T ss_dssp             CCTTCCGGGGCSSCEE--EECCHHHHHHHTTS----------CHHHHHHHHHHHHHHHH-CGGGTTTHHHHHHHH-HHHH
T ss_pred             hcccccccccccCCee--eeecHHhhhccccC----------ChhhCcccchhhhcccC-CCcccCCHHHHHHHH-HhCC
Confidence            4567899988775533  23334444333321          11567788888851110 124445677777777 6999


Q ss_pred             CccccccccCCcccChhHHHHHHHHhCCcceecC-CCCccCChHHHHHHHHHhhhc
Q 007898          166 EKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSRRDSFITHRAFCDAL  220 (585)
Q Consensus       166 ekpy~C~~CgK~F~~~s~L~~H~r~hgekpy~C~-Cgk~F~~~s~L~~H~~~h~~~  220 (585)
                      +++|.|++|++.|.....|..|+++| +++|.|+ |++.|.++..|++|+++|++.
T Consensus        72 ~~~~~C~~C~k~f~~~~~l~~H~~~H-~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           72 ISQFVCPLCLMPFSSSVSLKQHIRYT-EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             HCSEECTTTCCEESSHHHHHHHHHHT-CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCCeECCCCCcccCCHhHHHHHHHHC-CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            99999999999999999999999999 9999999 999999999999999888765

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.48  E-value=2.5e-14  Score=112.06  Aligned_cols=49  Identities=29%  Similarity=0.600  Sum_probs=31.7

Q ss_pred             CccccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCChHHHHHHH
Q 007898          166 EKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHR  214 (585)
Q Consensus       166 ekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~  214 (585)
                      ||||+|++|||.|.....|..|+++ .++|||.|+ |++.|.++..|++|+
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~   52 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHL   52 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHG
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHh
Confidence            5666666666666666666666666 466666666 666666666666666

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.47  E-value=2.7e-14  Score=117.86  Aligned_cols=78  Identities=21%  Similarity=0.411  Sum_probs=72.2

Q ss_pred             ccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCC----ccccccccCCcccChh
Q 007898          107 NLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGE----KKWKCDKCSKRYAVQS  182 (585)
Q Consensus       107 ~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htge----kpy~C~~CgK~F~~~s  182 (585)
                      .|.+|+++|.             ++++|.|++|+       +.|.....|..|+++|+.+    ++|+|.+|++.|....
T Consensus         2 s~~~H~~~H~-------------~~k~~~C~~C~-------~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~   61 (86)
T 1x6h_A            2 SSGSSGRTHT-------------GEKPYACSHCD-------KTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN   61 (86)
T ss_dssp             TTTCCSTTCC-------------CCCCEECSSSS-------CEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHH
T ss_pred             Ccccccceec-------------CCCCCcCCCCC-------CccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHH
Confidence            4678999988             89999999996       9999999999999987765    7999999999999999


Q ss_pred             HHHHHHHH-hCCcceecC-CCCcc
Q 007898          183 DWKAHSKT-CGTREYRCD-CGTLF  204 (585)
Q Consensus       183 ~L~~H~r~-hgekpy~C~-Cgk~F  204 (585)
                      .|..|+++ +++++|.|. |+..|
T Consensus        62 ~L~~H~~~h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           62 TMARHADNCAGPDGVEGENSGPSS   85 (86)
T ss_dssp             HHHHHHHHCCCCCSCCCCCCCCCC
T ss_pred             HHHHHHHHccCCCCcccCCCCCCC
Confidence            99999999 899999999 99876

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.47  E-value=1.4e-14  Score=113.53  Aligned_cols=56  Identities=21%  Similarity=0.424  Sum_probs=53.3

Q ss_pred             ccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHHhCC
Q 007898          131 KKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGT  193 (585)
Q Consensus       131 ~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~hge  193 (585)
                      ||||+|++||       +.|.....|..|+++|+++|||+|++|||.|.....|.+|+++|..
T Consensus         2 EKpy~C~~C~-------k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htg   57 (60)
T 4gzn_C            2 ERPFFCNFCG-------KTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQN   57 (60)
T ss_dssp             CCCEECTTTC-------CEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSC
T ss_pred             CCCccCCCCC-------CEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCC
Confidence            7999999996       9999999999999999999999999999999999999999999543

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.46  E-value=2.1e-15  Score=126.10  Aligned_cols=81  Identities=22%  Similarity=0.313  Sum_probs=76.8

Q ss_pred             cCcccccccCcccccccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccc
Q 007898           90 TNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKW  169 (585)
Q Consensus        90 ~kpy~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy  169 (585)
                      +++|.|++|++.|.....|..|+++|.             ++++|.|++|+       +.|.....|..|+++|++ ++|
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~~~~~C~~C~-------k~f~~~~~L~~H~~~h~~-~~~   59 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHT-------------GEKPFACDICG-------RKFARSDERKRHRDIQHI-LPI   59 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH-------------CCCCEECTTTC-------CEESSHHHHHHHHHHHTH-HHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcC-------------CCCCccCCCCC-------CccCCHHHHHHHHHHhCC-Ccc
Confidence            579999999999999999999999998             89999999996       999999999999999985 889


Q ss_pred             cccccCCcccChhHHHHHHHH-h
Q 007898          170 KCDKCSKRYAVQSDWKAHSKT-C  191 (585)
Q Consensus       170 ~C~~CgK~F~~~s~L~~H~r~-h  191 (585)
                      .|+.|++.|.....|..|++. |
T Consensus        60 ~c~~C~~~f~~~~~L~~H~~~~h   82 (88)
T 1llm_C           60 LEDKVEELLSKNYHLENEVARLK   82 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHH
Confidence            999999999999999999987 5

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=6.1e-14  Score=120.00  Aligned_cols=72  Identities=15%  Similarity=0.192  Sum_probs=65.8

Q ss_pred             CCccCChhhhhhhhccccCCccccccccCCccc-ChhHHHHHHHH-hC-CcceecC-CCCccCChHHHHHHHHHhh
Q 007898          147 SRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYA-VQSDWKAHSKT-CG-TREYRCD-CGTLFSRRDSFITHRAFCD  218 (585)
Q Consensus       147 ~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~-~~s~L~~H~r~-hg-ekpy~C~-Cgk~F~~~s~L~~H~~~h~  218 (585)
                      +..+.....+..|+++|.++++|+|++|++.|. .+..|.+|+++ ++ +++|.|+ |+|.|.++..|++|+++|+
T Consensus         3 s~s~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~   78 (98)
T 2gqj_A            3 SGSSGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH   78 (98)
T ss_dssp             CCCCCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHS
T ss_pred             CCCCCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHc
Confidence            356677788899999999999999999999999 99999999999 67 8999999 9999999999999996655

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.44  E-value=2.8e-14  Score=116.13  Aligned_cols=68  Identities=22%  Similarity=0.423  Sum_probs=39.1

Q ss_pred             cccccccCC--CCcccCCCCCccCChhhhhhhhc-cccCCccccccc--cCCcccChhHHHHHHHH-hCCcceecC-CCC
Q 007898          130 RKKVYVCPE--PNCVHHDPSRALGDLTGIKKHFC-RKHGEKKWKCDK--CSKRYAVQSDWKAHSKT-CGTREYRCD-CGT  202 (585)
Q Consensus       130 ~~k~y~C~~--CgC~~~~~~k~F~~~~~L~~H~r-~Htgekpy~C~~--CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk  202 (585)
                      ++++|.|..  |+       +.|.....|..|++ .|.++++|+|++  |++.|..+..|.+|+++ +++++|.|+ |++
T Consensus         4 ~~~~~~C~~~~C~-------~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k   76 (79)
T 2dlk_A            4 GSSGMPCDFPGCG-------RIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGP   76 (79)
T ss_dssp             CCSSEECSSTTTC-------CEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSC
T ss_pred             CCCCccCCCCCCc-------CccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCC
Confidence            445555554  53       55555555555555 455555566655  66666666666666555 455566665 665


Q ss_pred             cc
Q 007898          203 LF  204 (585)
Q Consensus       203 ~F  204 (585)
                      .|
T Consensus        77 ~F   78 (79)
T 2dlk_A           77 SS   78 (79)
T ss_dssp             CC
T ss_pred             CC
Confidence            55

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=1.4e-13  Score=111.97  Aligned_cols=67  Identities=19%  Similarity=0.387  Sum_probs=60.3

Q ss_pred             hhhhhhccccCCccccccccCCcccChhHHHHHHHH-hC--CcceecC-CCCccCChHHHHHHHHHhhhcc
Q 007898          155 GIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CG--TREYRCD-CGTLFSRRDSFITHRAFCDALA  221 (585)
Q Consensus       155 ~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hg--ekpy~C~-Cgk~F~~~s~L~~H~~~h~~~~  221 (585)
                      .|.+|+++|+++++|+|++|++.|.....|..|++. |.  +++|.|+ |++.|.++..|.+|++.+|...
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~   72 (77)
T 2ct1_A            2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS   72 (77)
T ss_dssp             CCCCCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCS
T ss_pred             CCCccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCC
Confidence            467899999999999999999999999999999985 64  3899999 9999999999999998776543

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.41  E-value=1.4e-13  Score=111.87  Aligned_cols=70  Identities=20%  Similarity=0.434  Sum_probs=63.4

Q ss_pred             cCCccccccc--cCCcccChhHHHHHHH-H-hCCcceecC---CCCccCChHHHHHHHHHhhhccccccccccCCCCccC
Q 007898          164 HGEKKWKCDK--CSKRYAVQSDWKAHSK-T-CGTREYRCD---CGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILS  236 (585)
Q Consensus       164 tgekpy~C~~--CgK~F~~~s~L~~H~r-~-hgekpy~C~---Cgk~F~~~s~L~~H~~~h~~~~~~~~r~ht~ekp~~c  236 (585)
                      +++++|.|..  |++.|.....|..|++ + .++++|.|+   |++.|..+..|.+|++           +|++++||.|
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~-----------~H~~~~~~~C   71 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK-----------LHSDTRDYIC   71 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHH-----------HHHTSCCCSC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHH-----------HhCCCCCeeC
Confidence            5788999997  9999999999999999 5 589999997   9999999999999994           4567899999


Q ss_pred             CCCCCCCC
Q 007898          237 SSSHHQPG  244 (585)
Q Consensus       237 s~c~~sf~  244 (585)
                      ..|++.|.
T Consensus        72 ~~C~k~F~   79 (79)
T 2dlk_A           72 EFSGPSSG   79 (79)
T ss_dssp             CSSSCCCC
T ss_pred             CCCCCCCC
Confidence            99999984

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.40  E-value=2.3e-13  Score=116.56  Aligned_cols=70  Identities=14%  Similarity=0.255  Sum_probs=64.6

Q ss_pred             CccCChhhhhhhhccccCCccccccccCCcc-cChhHHHHHHHHhCCcceecC-CCCccCChHHHHHH-HHHh
Q 007898          148 RALGDLTGIKKHFCRKHGEKKWKCDKCSKRY-AVQSDWKAHSKTCGTREYRCD-CGTLFSRRDSFITH-RAFC  217 (585)
Q Consensus       148 k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F-~~~s~L~~H~r~hgekpy~C~-Cgk~F~~~s~L~~H-~~~h  217 (585)
                      ..|.....|..|++.|.++++|+|++|+|.| ..+..|..|+++|++++|.|+ |+|.|..+..|++| +++|
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~~~~~L~~H~~~~H   86 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANH   86 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCSSHHHHHHHHHHHT
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHHHHHHCCCCeECCCCCCeeCCHHHHHHHhHHhc
Confidence            5677788899999999999999999999999 999999999999989999999 99999999999999 7444

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.39  E-value=3.1e-13  Score=109.87  Aligned_cols=66  Identities=35%  Similarity=0.795  Sum_probs=46.0

Q ss_pred             hccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCChHHHHHHHHHhhhccccccccccCCCCccC
Q 007898          160 FCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILS  236 (585)
Q Consensus       160 ~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~~~h~~~~~~~~r~ht~ekp~~c  236 (585)
                      ...+.++++|+|++|++.|.....|.+|+++ +++++|.|+ |++.|..+..|.+|+           ++|++++||.|
T Consensus        10 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~-----------~~H~~~~p~~C   77 (77)
T 2cot_A           10 EWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHH-----------RVHTGSGPSSG   77 (77)
T ss_dssp             CSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHHG-----------GGSCCCCCCCC
T ss_pred             cCcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHHH-----------HHhCCCCCCCC
Confidence            3445566777777777777777777777777 566777777 777777777777776           55666677765

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.38  E-value=1.6e-13  Score=111.59  Aligned_cols=63  Identities=27%  Similarity=0.483  Sum_probs=35.7

Q ss_pred             ccCcccccccCcccccccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcc
Q 007898           89 ATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKK  168 (585)
Q Consensus        89 ~~kpy~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekp  168 (585)
                      ++++|+|++|++.|.....|..|+++|.             ++++|+|++|+       +.|.....|.+|+++|+++++
T Consensus        15 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~-------------~~~~~~C~~C~-------~~f~~~~~L~~H~~~H~~~~p   74 (77)
T 2cot_A           15 ERRRYKCDECGKSFSHSSDLSKHRRTHT-------------GEKPYKCDECG-------KAFIQRSHLIGHHRVHTGSGP   74 (77)
T ss_dssp             CSCSSBCSSSCCBCSCHHHHHHHHTTTC-------------CSCSEECSSSC-------CEESSHHHHHHHGGGSCCCCC
T ss_pred             CCCCEECCCCCcccCCHHHHHHHHHHcC-------------CCcCeeCCCCC-------CccCCHHHHHHHHHHhCCCCC
Confidence            3455555555555555555555555555             45555555553       555555555555555555555


Q ss_pred             ccc
Q 007898          169 WKC  171 (585)
Q Consensus       169 y~C  171 (585)
                      |+|
T Consensus        75 ~~C   77 (77)
T 2cot_A           75 SSG   77 (77)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            554

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=1.4e-13  Score=117.70  Aligned_cols=80  Identities=19%  Similarity=0.329  Sum_probs=72.5

Q ss_pred             cccccccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccC-ChhhhhhhhccccC-CccccccccCCc
Q 007898          100 KGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALG-DLTGIKKHFCRKHG-EKKWKCDKCSKR  177 (585)
Q Consensus       100 k~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~-~~~~L~~H~r~Htg-ekpy~C~~CgK~  177 (585)
                      ..+.....+..|+++|.             ++++|.|++|+       +.|. ....|++|+++|++ +++|+|.+|+|.
T Consensus         4 ~s~~~~~~~~~h~~~h~-------------~~~~~~C~~C~-------k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~   63 (98)
T 2gqj_A            4 GSSGPGGPEEQWQRAIH-------------ERGEAVCPTCN-------VVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQ   63 (98)
T ss_dssp             CCCCCCCSCSHHHHTTT-------------TTSCCCCTTTC-------CCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCC
T ss_pred             CCCCCCCcHHHHHHHhc-------------cCCCcCCCCCC-------CChhhhHHHHHHHHHHHcCCCCCEECCCCCCc
Confidence            34566677889999998             89999999996       9999 99999999999999 999999999999


Q ss_pred             ccChhHHHHHHHH-hCCcceecC
Q 007898          178 YAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       178 F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      |..+..|.+|+++ |+++++...
T Consensus        64 F~~~~~L~~H~~~h~~~kp~~~~   86 (98)
T 2gqj_A           64 FKSKAGLNYHTMAEHSAKPSDAE   86 (98)
T ss_dssp             CSCHHHHHHHHHHHSCSCSSCCC
T ss_pred             cCCHHHHHHHHHHHcCCCCCCCC
Confidence            9999999999999 899987654

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.38  E-value=9.3e-14  Score=114.02  Aligned_cols=67  Identities=27%  Similarity=0.584  Sum_probs=36.9

Q ss_pred             CccCChhhhhhhhccccCCccccccc--cCCcccChhHHHHHHHH-hCCcceecC----CCCccCChHHHHHHHHHh
Q 007898          148 RALGDLTGIKKHFCRKHGEKKWKCDK--CSKRYAVQSDWKAHSKT-CGTREYRCD----CGTLFSRRDSFITHRAFC  217 (585)
Q Consensus       148 k~F~~~~~L~~H~r~Htgekpy~C~~--CgK~F~~~s~L~~H~r~-hgekpy~C~----Cgk~F~~~s~L~~H~~~h  217 (585)
                      +.|.....|..|+++|+++++|+|++  |++.|.....|.+|+++ ++   |.|+    |++.|.....|.+|+++|
T Consensus        11 ~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~---~~C~~~~~C~~~f~~~~~l~~H~~~h   84 (85)
T 2j7j_A           11 KAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVGKTWTLYLKHVAEC   84 (85)
T ss_dssp             CEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS---EECCSCSSCCCEESSHHHHHHHHHHC
T ss_pred             cccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC---CCCCCCCCCCCccCCHHHHHHHHHhc
Confidence            55555555555555555555555555  55555555555555555 33   5552    555555555555555444

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.38  E-value=3.7e-13  Score=110.39  Aligned_cols=75  Identities=17%  Similarity=0.303  Sum_probs=69.0

Q ss_pred             cccc--cccCCcccChhHHHHHHHH-hCCcceec--C-CCCccCChHHHHHHHHHhhhccccccccccCCCCccCCC---
Q 007898          168 KWKC--DKCSKRYAVQSDWKAHSKT-CGTREYRC--D-CGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSSS---  238 (585)
Q Consensus       168 py~C--~~CgK~F~~~s~L~~H~r~-hgekpy~C--~-Cgk~F~~~s~L~~H~~~h~~~~~~~~r~ht~ekp~~cs~---  238 (585)
                      ||+|  ++|++.|.....|..|+++ +++++|.|  + |++.|..+..|.+|+++|++              |.|..   
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~--------------~~C~~~~~   66 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--------------YPCKKDDS   66 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS--------------EECCSCSS
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC--------------CCCCCCCC
Confidence            6899  9999999999999999999 79999999  4 99999999999999977653              99999   


Q ss_pred             CCCCCCcCCCcccccccc
Q 007898          239 SHHQPGIVAGASSHVNLQ  256 (585)
Q Consensus       239 c~~sf~~~s~l~sH~~~~  256 (585)
                      |++.|.....|..|++.+
T Consensus        67 C~~~f~~~~~l~~H~~~h   84 (85)
T 2j7j_A           67 CSFVGKTWTLYLKHVAEC   84 (85)
T ss_dssp             CCCEESSHHHHHHHHHHC
T ss_pred             CCCccCCHHHHHHHHHhc
Confidence            999999999999998765

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.35  E-value=7.3e-13  Score=106.30  Aligned_cols=62  Identities=27%  Similarity=0.576  Sum_probs=55.5

Q ss_pred             hhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCChHHHHHHHHHhhhc
Q 007898          159 HFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCDAL  220 (585)
Q Consensus       159 H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~~~h~~~  220 (585)
                      +.++|+++++|+|++|++.|.....|..|+++ +++++|.|+ |++.|.++..|++|+++|++.
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            46788999999999999999999999999999 788999999 999999999999999877643

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.34  E-value=3.4e-13  Score=117.05  Aligned_cols=67  Identities=19%  Similarity=0.316  Sum_probs=49.0

Q ss_pred             ccCCccccccccCCcccChhHHHHHHHH-h----CCcceecC-CCCccCChHHHHHH-HHHhhhccccccccccCCCCcc
Q 007898          163 KHGEKKWKCDKCSKRYAVQSDWKAHSKT-C----GTREYRCD-CGTLFSRRDSFITH-RAFCDALAEESTRAITGTNPIL  235 (585)
Q Consensus       163 Htgekpy~C~~CgK~F~~~s~L~~H~r~-h----gekpy~C~-Cgk~F~~~s~L~~H-~~~h~~~~~~~~r~ht~ekp~~  235 (585)
                      .+|+++|.|++|++.|..+..|.+|+++ |    ++++|.|+ |++.|..+..|.+| +           ++|++++||.
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~-----------r~Htgekpy~   81 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNL-----------KYHPGEENFK   81 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHH-----------HTSTTCCCEE
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHH-----------HhcCCCCCee
Confidence            4567777777777777777777777764 5    36777777 77777777777777 5           5667777777


Q ss_pred             CCCCC
Q 007898          236 SSSSH  240 (585)
Q Consensus       236 cs~c~  240 (585)
                      |..+.
T Consensus        82 C~~~~   86 (102)
T 2ghf_A           82 LTMVK   86 (102)
T ss_dssp             EEECC
T ss_pred             CCccc
Confidence            77643

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.34  E-value=7.4e-13  Score=104.04  Aligned_cols=60  Identities=28%  Similarity=0.572  Sum_probs=53.5

Q ss_pred             hccccCCccccccccCCcccChhHHHHHHHH-h--CCcceecC-CCCccCChHHHHHHHHHhhh
Q 007898          160 FCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-C--GTREYRCD-CGTLFSRRDSFITHRAFCDA  219 (585)
Q Consensus       160 ~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-h--gekpy~C~-Cgk~F~~~s~L~~H~~~h~~  219 (585)
                      +++|+++++|.|++|++.|.....|..|+++ |  ++++|.|+ |++.|.++..|..|++.|++
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             -CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             ccccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            3678899999999999999999999999988 6  67999999 99999999999999988875

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.33  E-value=2.2e-13  Score=118.26  Aligned_cols=63  Identities=16%  Similarity=0.166  Sum_probs=32.4

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhc-cc---cCCccccccccCCcccChhHHHHH-HHH-hCCcceecC
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFC-RK---HGEKKWKCDKCSKRYAVQSDWKAH-SKT-CGTREYRCD  199 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r-~H---tgekpy~C~~CgK~F~~~s~L~~H-~r~-hgekpy~C~  199 (585)
                      ++++|.|++|+       +.|..+..|..|++ +|   .++++|+|++|||.|..+..|..| +++ .+++||.|.
T Consensus        15 gekpy~C~~Cg-------k~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~   83 (102)
T 2ghf_A           15 VEGGYECKYCT-------FQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLT   83 (102)
T ss_dssp             CCSSEECSSCS-------CEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEE
T ss_pred             CCcCcCCCCCC-------CccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCC
Confidence            44555555553       55555555555554 24   334555555555555555555555 444 355555554

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.33  E-value=5.5e-13  Score=114.15  Aligned_cols=76  Identities=16%  Similarity=0.207  Sum_probs=68.5

Q ss_pred             cccccccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCcc-CChhhhhhhhccccCCccccccccCCcc
Q 007898          100 KGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRAL-GDLTGIKKHFCRKHGEKKWKCDKCSKRY  178 (585)
Q Consensus       100 k~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F-~~~~~L~~H~r~Htgekpy~C~~CgK~F  178 (585)
                      ..|.....|..|++.|.             ++++|.|++|+       +.| .....|+.|+++| ++++|+|.+|+|.|
T Consensus        14 ~~~~~~~~~~~~~~~~~-------------~~~~~~C~~C~-------k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F   72 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIV-------------DKGSVSCPTCQ-------AVGRKTIEGLKKHMENC-KQEMFTCHHCGKQL   72 (96)
T ss_dssp             CSSCTTCHHHHHHHHHH-------------HTSCEECTTTC-------SCEESSHHHHHHHHHHH-CCCCCCCSSSCCCC
T ss_pred             CCCCCchHHHHHHHHhc-------------CCCCcCCCCCC-------CCcccCHHHHHHHHHHH-CCCCeECCCCCCee
Confidence            45667778888988887             89999999996       999 9999999999999 99999999999999


Q ss_pred             cChhHHHHH-HHHhCCcce
Q 007898          179 AVQSDWKAH-SKTCGTREY  196 (585)
Q Consensus       179 ~~~s~L~~H-~r~hgekpy  196 (585)
                      ..+..|..| +++|.+++|
T Consensus        73 ~~~~~L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           73 RSLAGMKYHVMANHNSLPS   91 (96)
T ss_dssp             SSHHHHHHHHHHHTCCCSS
T ss_pred             CCHHHHHHHhHHhcCCCCC
Confidence            999999999 777877775

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.32  E-value=1.6e-12  Score=104.80  Aligned_cols=54  Identities=31%  Similarity=0.818  Sum_probs=36.7

Q ss_pred             cccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCChHHHHHHHH
Q 007898          162 RKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRA  215 (585)
Q Consensus       162 ~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~~  215 (585)
                      .+.++++|+|.+|++.|.....|..|+++ +++++|.|+ |++.|.++..|.+|++
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~   66 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR   66 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHH
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHH
Confidence            34556667777777777777777777766 466677777 7777777777777763

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.27  E-value=2.1e-12  Score=104.00  Aligned_cols=61  Identities=21%  Similarity=0.507  Sum_probs=57.9

Q ss_pred             ccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHH-hCCcce
Q 007898          129 IRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREY  196 (585)
Q Consensus       129 ~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy  196 (585)
                      .++++|+|++|+       +.|.....|..|+++|+++++|+|.+|++.|..+..|.+|+++ ++++||
T Consensus        13 ~~~~~~~C~~C~-------k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           13 HSDKPYKCDRCQ-------ASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCSBCCTTSS-------CCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             CCCCCeECCCCC-------ceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            378999999996       9999999999999999999999999999999999999999999 788886

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.27  E-value=4.2e-12  Score=96.53  Aligned_cols=54  Identities=22%  Similarity=0.491  Sum_probs=39.3

Q ss_pred             CCccccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCChHHHHHHHHHhh
Q 007898          165 GEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCD  218 (585)
Q Consensus       165 gekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~~~h~  218 (585)
                      |+++|+|.+|++.|.....|..|+++ +++++|.|+ |++.|..+..|..|++.|+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            45677788888888888888888777 677778887 8888888888888877665

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=5.4e-12  Score=102.53  Aligned_cols=58  Identities=21%  Similarity=0.518  Sum_probs=51.4

Q ss_pred             cccCCccccccccCCcccChhHHHHHHHH-hC---CcceecC-CCCccCChHHHHHHHHHhhh
Q 007898          162 RKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CG---TREYRCD-CGTLFSRRDSFITHRAFCDA  219 (585)
Q Consensus       162 ~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hg---ekpy~C~-Cgk~F~~~s~L~~H~~~h~~  219 (585)
                      .|+++++|+|++|++.|.....|.+|+++ ++   +++|.|+ |++.|..+..|.+|++.+|.
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   63 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHP   63 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTST
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCC
Confidence            47899999999999999999999999999 54   8999999 99999999999999965443

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.25  E-value=3.9e-12  Score=101.29  Aligned_cols=56  Identities=18%  Similarity=0.450  Sum_probs=38.3

Q ss_pred             ccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCChHHHHHHHHHhh
Q 007898          163 KHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCD  218 (585)
Q Consensus       163 Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~~~h~  218 (585)
                      |.++++|+|++|++.|.....|.+|+++ +++++|.|+ |++.|.++..|.+|+++|+
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~   61 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH   61 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHH
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHh
Confidence            5566677777777777777777777766 466677777 7777777777777765554

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.25  E-value=4.9e-12  Score=106.06  Aligned_cols=56  Identities=14%  Similarity=0.358  Sum_probs=48.3

Q ss_pred             hccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCChHHHHHHHH
Q 007898          160 FCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRA  215 (585)
Q Consensus       160 ~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~~  215 (585)
                      +.++..+++|.|++|+|.|..+..|.+|+++ ++++||.|+ |+|.|.++..|.+|++
T Consensus        20 ~~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~   77 (85)
T 2lv2_A           20 LGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHIN   77 (85)
T ss_dssp             CSSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHH
T ss_pred             CCCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCc
Confidence            4566678889999999999999999999988 788999998 9999999999999974

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=7.4e-14  Score=111.40  Aligned_cols=70  Identities=17%  Similarity=0.247  Sum_probs=63.9

Q ss_pred             hhhhhhhhccccCCccccccccCCcccChhHHHHHHHHhCCcceecC-CCCccCChHHHHHHHHHhhhccccccccccCC
Q 007898          153 LTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSRRDSFITHRAFCDALAEESTRAITGT  231 (585)
Q Consensus       153 ~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~hgekpy~C~-Cgk~F~~~s~L~~H~~~h~~~~~~~~r~ht~e  231 (585)
                      ...|..|+++|.++++|.|++|++.|.....|..      +++|.|+ |++.|..+..|..|+           ++|+++
T Consensus         3 ~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~------~~~~~C~~C~~~f~~~~~l~~H~-----------~~H~~~   65 (73)
T 2ctu_A            3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR------RKTPMCEKCRKDSCQEAALNKDE-----------GNESGK   65 (73)
T ss_dssp             CCSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC------SSSCCCHHHHHTCSCCCSSCCCS-----------SCCCCC
T ss_pred             chhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc------CCCCCCCCCChhhcCHHHHHHHH-----------HhhcCC
Confidence            4578999999999999999999999999888876      7899999 999999999999998           778899


Q ss_pred             CCccCCCC
Q 007898          232 NPILSSSS  239 (585)
Q Consensus       232 kp~~cs~c  239 (585)
                      +||.|..|
T Consensus        66 ~~~~C~~C   73 (73)
T 2ctu_A           66 KTSGPSSG   73 (73)
T ss_dssp             CCSSCCCC
T ss_pred             CCCCCCCC
Confidence            99999987

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.24  E-value=4e-12  Score=101.26  Aligned_cols=61  Identities=18%  Similarity=0.230  Sum_probs=57.7

Q ss_pred             ccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHH-hCCcce
Q 007898          129 IRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREY  196 (585)
Q Consensus       129 ~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy  196 (585)
                      .++++|+|++|+       +.|.....|..|+++|+++++|+|.+|++.|.....|.+|+++ +++++.
T Consensus         5 ~~~~~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            5 SSGHPEKCSECS-------YSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             CCCCSEECSSSS-------CEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCeECCCCC-------cccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            388999999996       9999999999999999999999999999999999999999999 888874

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.24  E-value=4.3e-12  Score=103.02  Aligned_cols=66  Identities=21%  Similarity=0.336  Sum_probs=60.2

Q ss_pred             ccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhc-cccCC-ccccccccCCcccChhHH
Q 007898          107 NLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFC-RKHGE-KKWKCDKCSKRYAVQSDW  184 (585)
Q Consensus       107 ~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r-~Htge-kpy~C~~CgK~F~~~s~L  184 (585)
                      .|.+|+++|.             ++++|.|++|+       +.|.....|..|++ .|.++ ++|+|++|++.|..+..|
T Consensus         2 s~~~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L   61 (77)
T 2ct1_A            2 SSGSSGRTHS-------------GEKPYECYICH-------ARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL   61 (77)
T ss_dssp             CCCCCCCCCS-------------CCCSEECTTTC-------CEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHH
T ss_pred             CCCccccccC-------------CCCCeECCCcC-------chhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHH
Confidence            4678999998             99999999996       99999999999997 67765 899999999999999999


Q ss_pred             HHHHHH-hC
Q 007898          185 KAHSKT-CG  192 (585)
Q Consensus       185 ~~H~r~-hg  192 (585)
                      ..|+++ |+
T Consensus        62 ~~H~~~~H~   70 (77)
T 2ct1_A           62 GVHLRKQHS   70 (77)
T ss_dssp             HHHHHHTSC
T ss_pred             HHHHHHhCC
Confidence            999999 64

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.22  E-value=1e-12  Score=117.24  Aligned_cols=83  Identities=16%  Similarity=0.220  Sum_probs=71.7

Q ss_pred             cccCcccccccCcccc------cccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhc
Q 007898           88 MATNRFVCEICNKGFQ------RDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFC  161 (585)
Q Consensus        88 ~~~kpy~C~~Cgk~F~------~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r  161 (585)
                      ..++.|.|++|.+.|.      ....|..|+ .|+             ++++|.|++|+       +.|.....|..|++
T Consensus        37 ~~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~-------------~~~~~~C~~C~-------k~f~~~~~l~~H~~   95 (129)
T 2wbt_A           37 PEQKRLIRAIVKTLIHNPQLLDESSYLYRLL-ASK-------------AISQFVCPLCL-------MPFSSSVSLKQHIR   95 (129)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHH-------------HHCSEECTTTC-------CEESSHHHHHHHHH
T ss_pred             hhhCcccchhhhcccCCCcccCCHHHHHHHH-HhC-------------CCCCeECCCCC-------cccCCHhHHHHHHH
Confidence            3467899999998887      445555665 465             89999999996       99999999999999


Q ss_pred             cccCCccccccccCCcccChhHHHHHHHH-hCC
Q 007898          162 RKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGT  193 (585)
Q Consensus       162 ~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hge  193 (585)
                      +|  +++|+|++|++.|.....|.+|+++ |+.
T Consensus        96 ~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           96 YT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             HT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             HC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            99  8999999999999999999999999 654

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.22  E-value=6.7e-12  Score=100.59  Aligned_cols=57  Identities=26%  Similarity=0.445  Sum_probs=54.3

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHH-hCC
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGT  193 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hge  193 (585)
                      ++++|+|++|+       +.|.....|..|+++|+++++|+|.+|++.|.....|.+|+++ +++
T Consensus        11 ~~k~~~C~~C~-------k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A           11 GEKPYGCVECG-------KAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             TCCCEECSSSC-------CEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             CCCCccCCCCC-------CccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            89999999996       9999999999999999999999999999999999999999999 454

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.21  E-value=7.2e-12  Score=105.01  Aligned_cols=55  Identities=13%  Similarity=0.339  Sum_probs=52.5

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHH-h
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-C  191 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-h  191 (585)
                      ..++|.|++||       +.|..+..|.+|+++|+++|+|+|++|+|.|..+..|.+|++. |
T Consensus        25 ~~~~h~C~~Cg-------k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H   80 (85)
T 2lv2_A           25 SAECHLCPVCG-------ESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH   80 (85)
T ss_dssp             CCTTEECTTSC-------CEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTC
T ss_pred             CCCCEECCCCC-------CCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccC
Confidence            78899999996       9999999999999999999999999999999999999999876 6

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=7e-13  Score=105.65  Aligned_cols=70  Identities=11%  Similarity=0.166  Sum_probs=64.3

Q ss_pred             cccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhH
Q 007898          104 RDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSD  183 (585)
Q Consensus       104 ~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~  183 (585)
                      ....|..|+++|.             ++++|.|++|+       +.|.....|..       +++|+|++|++.|.....
T Consensus         2 ~~~~l~~H~~~h~-------------~~~~~~C~~C~-------k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~   54 (73)
T 2ctu_A            2 SSGSSGKRQKIHL-------------GDRSQKCSKCG-------IIFIRRSTLSR-------RKTPMCEKCRKDSCQEAA   54 (73)
T ss_dssp             CCCSCCCCCCCCC-------------CCSEEECSSSC-------CEEECCCCCCC-------SSSCCCHHHHHTCSCCCS
T ss_pred             cchhHHHHHHHhC-------------CCCCeeCCccc-------chhCCHHHhCc-------CCCCCCCCCChhhcCHHH
Confidence            4567899999998             89999999996       99999988877       789999999999999999


Q ss_pred             HHHHHHH-hCCcceecC-C
Q 007898          184 WKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       184 L~~H~r~-hgekpy~C~-C  200 (585)
                      |..|+++ +++++|.|+ |
T Consensus        55 l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           55 LNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             SCCCSSCCCCCCCSSCCCC
T ss_pred             HHHHHHhhcCCCCCCCCCC
Confidence            9999999 789999998 7

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.16  E-value=1.4e-11  Score=93.63  Aligned_cols=54  Identities=19%  Similarity=0.300  Sum_probs=49.0

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHH
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      ++++|+|++|+       +.|.....|..|+++|+++++|+|++|++.|.....|..|+++
T Consensus         1 g~~~~~C~~C~-------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   54 (57)
T 3uk3_C            1 GSSSRECSYCG-------KFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLER   54 (57)
T ss_dssp             ----CBCTTTC-------CBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCccCCCCc-------chhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHHHHH
Confidence            46899999996       9999999999999999999999999999999999999999998

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.12  E-value=2.7e-11  Score=94.97  Aligned_cols=56  Identities=20%  Similarity=0.436  Sum_probs=52.9

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhcc-c-cCCccccccccCCcccChhHHHHHHHH-hC
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCR-K-HGEKKWKCDKCSKRYAVQSDWKAHSKT-CG  192 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~-H-tgekpy~C~~CgK~F~~~s~L~~H~r~-hg  192 (585)
                      ++++|.|++|+       +.|.....|..|++. | .++++|+|++|++.|.....|..|+++ |+
T Consensus         7 ~~k~~~C~~C~-------k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            7 GEHTYRCKVCS-------RVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             ETTEEECTTTC-------CEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             CCcceECCCCc-------chhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            89999999996       999999999999998 7 589999999999999999999999998 65

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.11  E-value=4.1e-11  Score=95.87  Aligned_cols=62  Identities=21%  Similarity=0.523  Sum_probs=52.2

Q ss_pred             hhhhh-ccccCCcccccc--ccCCcccChhHHHHHHHH-hCCcceecC-CCCccCChHHHHHHHHHh
Q 007898          156 IKKHF-CRKHGEKKWKCD--KCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFC  217 (585)
Q Consensus       156 L~~H~-r~Htgekpy~C~--~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~~~h  217 (585)
                      +..|+ .+|.++++|+|.  .|++.|.....|..|+++ +++++|.|+ |++.|.++..|.+|+++|
T Consensus         6 ~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G            6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             --CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             ccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            33443 367789999997  599999999999999999 789999999 999999999999998654

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.10  E-value=6.9e-11  Score=89.73  Aligned_cols=50  Identities=28%  Similarity=0.569  Sum_probs=28.8

Q ss_pred             cccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCChHHHHHHHHHh
Q 007898          168 KWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFC  217 (585)
Q Consensus       168 py~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~~~h  217 (585)
                      ||+|++|++.|.....|..|+++ +++++|.|+ |++.|..+..|.+|+++|
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h   52 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK   52 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHh
Confidence            35555566666555556666555 455556665 666666666666665433

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.09  E-value=6.1e-11  Score=91.09  Aligned_cols=48  Identities=31%  Similarity=0.792  Sum_probs=30.0

Q ss_pred             ccccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCChHHHHHHH
Q 007898          167 KKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHR  214 (585)
Q Consensus       167 kpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~  214 (585)
                      |+|+|++|++.|.....|..|+++ +++++|.|+ |++.|.++..|.+|+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   50 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHA   50 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHH
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHH
Confidence            356666666666666666666666 455666666 666666666666664

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=2.2e-11  Score=98.90  Aligned_cols=61  Identities=13%  Similarity=0.174  Sum_probs=43.2

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccC---CccccccccCCcccChhHHHHHHHH-h-CCccee
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHG---EKKWKCDKCSKRYAVQSDWKAHSKT-C-GTREYR  197 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htg---ekpy~C~~CgK~F~~~s~L~~H~r~-h-gekpy~  197 (585)
                      ++++|+|++|+       +.|.....|..|+++|++   +++|+|.+|++.|..+..|.+|++. | +++++.
T Consensus         4 ~~k~~~C~~C~-------k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~   69 (78)
T 2d9h_A            4 GSSGLQCEICG-------FTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP   69 (78)
T ss_dssp             SCCCEECSSSC-------CEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCC
T ss_pred             CCcCeECCCCC-------CeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCc
Confidence            67777777774       777777777777777775   6777777777777777777777755 4 444443

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.08  E-value=6e-11  Score=90.04  Aligned_cols=55  Identities=18%  Similarity=0.429  Sum_probs=51.6

Q ss_pred             ccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHH-hCCc
Q 007898          133 VYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTR  194 (585)
Q Consensus       133 ~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgek  194 (585)
                      +|.|++|+       +.|.....|..|+++|+++++|.|++|++.|.....|..|+++ ++++
T Consensus         1 p~~C~~C~-------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECG-------IRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTC-------CBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCc-------CcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            68999996       9999999999999999999999999999999999999999999 5654

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.03  E-value=1.3e-10  Score=89.18  Aligned_cols=54  Identities=20%  Similarity=0.500  Sum_probs=50.4

Q ss_pred             cccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHH-hC
Q 007898          132 KVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CG  192 (585)
Q Consensus       132 k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hg  192 (585)
                      ++|.|++|+       +.|.....|..|+++|+++++|.|.+|++.|.....|..|++. |.
T Consensus         1 k~~~C~~C~-------~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~   55 (60)
T 2adr_A            1 RSFVCEVCT-------RAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS   55 (60)
T ss_dssp             CCBCCTTTC-------CCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcCcCCCCc-------cccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcC
Confidence            589999996       9999999999999999999999999999999999999999854 64

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=1.4e-10  Score=97.30  Aligned_cols=30  Identities=13%  Similarity=0.268  Sum_probs=17.1

Q ss_pred             ccccccCCcccChhHHHHHHHH-hCCcceec
Q 007898          169 WKCDKCSKRYAVQSDWKAHSKT-CGTREYRC  198 (585)
Q Consensus       169 y~C~~CgK~F~~~s~L~~H~r~-hgekpy~C  198 (585)
                      |.|.+|++.|..+..|.+|+++ +++++|.|
T Consensus        63 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   93 (95)
T 2ej4_A           63 EECPREGKSFKAKYKLVNHIRVHTGEKSGPS   93 (95)
T ss_dssp             TTCSSTTCCCSSHHHHHHHHHHHHTCCCCSS
T ss_pred             cCCCCCCcccCCHHHHHHHHHhcCCCCCCCC
Confidence            5555555555555555555555 45555555

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=3e-10  Score=95.30  Aligned_cols=60  Identities=22%  Similarity=0.358  Sum_probs=50.4

Q ss_pred             cccccccCCcccChhHHHHHHHH-h-CCcc--------eecC-CCCccCChHHHHHHHHHhhhccccccccccCCCCccC
Q 007898          168 KWKCDKCSKRYAVQSDWKAHSKT-C-GTRE--------YRCD-CGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILS  236 (585)
Q Consensus       168 py~C~~CgK~F~~~s~L~~H~r~-h-gekp--------y~C~-Cgk~F~~~s~L~~H~~~h~~~~~~~~r~ht~ekp~~c  236 (585)
                      .|.|.+|++.|.....|.+|+++ | ++++        |.|+ |++.|..+..|++|+           ++|++++||.|
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~-----------~~H~~~k~~~C   93 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHI-----------RVHTGEKSGPS   93 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHH-----------HHHHTCCCCSS
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHH-----------HhcCCCCCCCC
Confidence            46788888888888888888887 5 4455        9999 999999999999999           55678999999


Q ss_pred             CC
Q 007898          237 SS  238 (585)
Q Consensus       237 s~  238 (585)
                      ..
T Consensus        94 ~~   95 (95)
T 2ej4_A           94 SG   95 (95)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.96  E-value=2.4e-10  Score=83.11  Aligned_cols=44  Identities=18%  Similarity=0.326  Sum_probs=39.5

Q ss_pred             hhhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          157 KKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       157 ~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      ++|+++|+++++|.|++|++.|.....|..|+++ +++++|.|+ |
T Consensus         1 ~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            1 GSSGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            3688999999999999999999999999999998 789999998 7

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.96  E-value=3.3e-10  Score=82.37  Aligned_cols=43  Identities=19%  Similarity=0.406  Sum_probs=38.5

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999988 688999998 7

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.8e-10  Score=81.97  Aligned_cols=43  Identities=26%  Similarity=0.376  Sum_probs=38.5

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999988 688999998 7

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=3.5e-10  Score=82.08  Aligned_cols=43  Identities=19%  Similarity=0.346  Sum_probs=38.0

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            588889999999999999999999999999888 688899988 7

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.95  E-value=4.2e-10  Score=81.61  Aligned_cols=43  Identities=28%  Similarity=0.473  Sum_probs=38.7

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588899999999999999999999999999988 688999998 7

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.94  E-value=2.7e-10  Score=91.00  Aligned_cols=55  Identities=20%  Similarity=0.556  Sum_probs=52.0

Q ss_pred             cccccccC--CCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHHh
Q 007898          130 RKKVYVCP--EPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTC  191 (585)
Q Consensus       130 ~~k~y~C~--~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~h  191 (585)
                      ++++|.|+  .|+       +.|.....|..|+++|+++++|+|++|++.|.....|.+|+++|
T Consensus        16 ~~~~~~C~~~~C~-------k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           16 KMRPYACPVESCD-------RRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CCCCEECSSTTBC-------CEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             CCCccCCcCCCCC-------CccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            88999997  585       99999999999999999999999999999999999999999874

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.94  E-value=3.2e-10  Score=82.39  Aligned_cols=43  Identities=26%  Similarity=0.476  Sum_probs=36.7

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            578888888888888888888888888888888 688888887 6

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3.5e-10  Score=82.15  Aligned_cols=43  Identities=21%  Similarity=0.376  Sum_probs=37.6

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +|+++|+++++|.|++|++.|.....|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588888999999999999999999999999888 688889887 6

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3.6e-10  Score=82.09  Aligned_cols=43  Identities=21%  Similarity=0.372  Sum_probs=38.6

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +|+++|+++++|+|++|+|.|.....|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            588899999999999999999999999999988 688999998 7

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3.2e-10  Score=82.33  Aligned_cols=43  Identities=19%  Similarity=0.403  Sum_probs=37.0

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            578888888888888888888888888888888 688888887 6

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3.7e-10  Score=82.05  Aligned_cols=43  Identities=19%  Similarity=0.409  Sum_probs=38.3

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +|+++|+++++|+|++|+|.|..+..|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            588889999999999999999999999999988 688999998 7

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.94  E-value=3.5e-10  Score=82.15  Aligned_cols=43  Identities=21%  Similarity=0.385  Sum_probs=35.1

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +|+++|+++++|+|++|+|.|..+..|.+|+++ ++++||.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            477888888888888888888888888888888 678888887 6

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.94  E-value=3.4e-10  Score=82.19  Aligned_cols=43  Identities=23%  Similarity=0.467  Sum_probs=35.7

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            577888888888888888888888888888888 678888887 6

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=3.8e-10  Score=81.87  Aligned_cols=43  Identities=21%  Similarity=0.371  Sum_probs=36.3

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            578888888888888888888888888888888 678888887 6

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=3.7e-10  Score=81.99  Aligned_cols=43  Identities=21%  Similarity=0.364  Sum_probs=38.2

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            588889999999999999999999999999988 688999998 6

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=4.3e-10  Score=81.58  Aligned_cols=43  Identities=23%  Similarity=0.446  Sum_probs=37.0

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            578888888889998899988888888888888 688888887 7

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.93  E-value=4.9e-10  Score=81.46  Aligned_cols=43  Identities=26%  Similarity=0.411  Sum_probs=37.8

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      .|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            478889999999999999999999999999888 688899998 7

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=3.7e-10  Score=81.89  Aligned_cols=43  Identities=19%  Similarity=0.375  Sum_probs=37.7

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            578888999999999999999999999999888 688889888 7

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.93  E-value=3.7e-10  Score=82.02  Aligned_cols=43  Identities=21%  Similarity=0.408  Sum_probs=36.9

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +|+++|+++++|.|++|++.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            578888888888888888888888888888888 688888887 6

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=4.3e-10  Score=80.88  Aligned_cols=42  Identities=21%  Similarity=0.331  Sum_probs=35.7

Q ss_pred             hhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          159 HFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       159 H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      |+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+ |
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67788888888888888888888888888888 688888887 6

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=4.2e-10  Score=81.71  Aligned_cols=43  Identities=23%  Similarity=0.416  Sum_probs=37.8

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            588889999999999999999999999999888 688899988 6

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=4e-10  Score=81.75  Aligned_cols=43  Identities=21%  Similarity=0.424  Sum_probs=36.5

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            578888888888888888888888888888888 678888887 6

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=4.8e-10  Score=81.42  Aligned_cols=43  Identities=23%  Similarity=0.431  Sum_probs=38.1

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      .|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            588889999999999999999999999999888 688999998 7

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=5e-10  Score=81.31  Aligned_cols=43  Identities=19%  Similarity=0.343  Sum_probs=35.4

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      .|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            377888888888888888888888888888888 678888887 6

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=3.7e-10  Score=81.90  Aligned_cols=43  Identities=23%  Similarity=0.439  Sum_probs=36.0

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            577888888888888888888888888888888 678888887 6

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=3.5e-10  Score=82.12  Aligned_cols=43  Identities=23%  Similarity=0.430  Sum_probs=37.6

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            578888899999999999999999999999888 688889888 7

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.92  E-value=3.5e-10  Score=82.08  Aligned_cols=43  Identities=19%  Similarity=0.417  Sum_probs=35.1

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            577888888888888888888888888888888 678888887 6

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.92  E-value=4.2e-10  Score=81.64  Aligned_cols=43  Identities=23%  Similarity=0.362  Sum_probs=37.7

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +|+++|+++++|+|++|+|.|..+..|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            588888899999999999999999999999888 688889888 7

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.92  E-value=3.6e-10  Score=82.19  Aligned_cols=43  Identities=14%  Similarity=0.349  Sum_probs=36.3

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            578888888888888888888888888888888 678888887 6

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=6.6e-10  Score=80.86  Aligned_cols=43  Identities=26%  Similarity=0.411  Sum_probs=37.8

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      .|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            378888999999999999999999999999988 688999998 7

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=4.2e-10  Score=81.75  Aligned_cols=43  Identities=23%  Similarity=0.402  Sum_probs=35.7

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      .|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            477888888888888888888888888888888 678888887 6

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=4e-10  Score=81.96  Aligned_cols=43  Identities=21%  Similarity=0.392  Sum_probs=35.1

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      .|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            477888888888888888888888888888888 678888887 6

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=5.7e-10  Score=81.09  Aligned_cols=43  Identities=21%  Similarity=0.374  Sum_probs=34.5

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      .|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            367788888888888888888888888888888 677888887 6

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.91  E-value=4.1e-10  Score=81.65  Aligned_cols=43  Identities=23%  Similarity=0.399  Sum_probs=36.0

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +|+++|+++++|+|++|++.|.....|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            578888888888888888888888888888888 678888887 6

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=4.2e-10  Score=81.72  Aligned_cols=43  Identities=23%  Similarity=0.372  Sum_probs=34.4

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477788888888888888888888888888877 577888887 6

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.91  E-value=5.6e-10  Score=81.14  Aligned_cols=43  Identities=23%  Similarity=0.387  Sum_probs=34.8

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      .|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            377788888888888888888888888888888 677888887 6

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.89  E-value=5e-10  Score=81.20  Aligned_cols=43  Identities=21%  Similarity=0.363  Sum_probs=34.9

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      .|+++|+++++|+|++|+|.|.....|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            477888888888888888888888888888887 677888887 6

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=4e-10  Score=81.82  Aligned_cols=43  Identities=26%  Similarity=0.518  Sum_probs=35.2

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            577888888888888888888888888888887 577888887 6

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=5.2e-10  Score=81.21  Aligned_cols=43  Identities=26%  Similarity=0.446  Sum_probs=37.8

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      .|+++|+++++|+|++|+|.|..+..|..|+++ +++++|.|+ |
T Consensus         2 ~h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            578889999999999999999999999999888 688899888 7

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.89  E-value=5.6e-10  Score=81.07  Aligned_cols=42  Identities=24%  Similarity=0.449  Sum_probs=35.5

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      +|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2ep3_A            2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTT
T ss_pred             CCCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence            578888888888888888888888888888888 678888887

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=5.5e-10  Score=81.09  Aligned_cols=43  Identities=23%  Similarity=0.435  Sum_probs=33.5

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      .|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            367778888888888888888888888888777 577788877 6

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=7.7e-10  Score=80.32  Aligned_cols=43  Identities=14%  Similarity=0.190  Sum_probs=37.4

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      .|+++|+++++|+|++|++.|.....|..|+++ +++++|+|. |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            478888889999999999999999999999888 688889887 7

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=7.8e-10  Score=80.27  Aligned_cols=43  Identities=23%  Similarity=0.457  Sum_probs=36.6

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      .|+++|+++++|+|++|+|.|.....|.+|+++ +++++|.|+ |
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            477888888888888888888888888888888 688888887 6

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.88  E-value=8.2e-10  Score=80.35  Aligned_cols=43  Identities=16%  Similarity=0.301  Sum_probs=36.0

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHH-H-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSK-T-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r-~-hgekpy~C~-C  200 (585)
                      .|+++|+++++|+|++|+|.|..+..|.+|++ + .++++|.|+ |
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            47888888888888888888888888888888 6 578888887 6

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.88  E-value=7.1e-10  Score=80.58  Aligned_cols=43  Identities=14%  Similarity=0.264  Sum_probs=34.6

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      .|+++|+++++|+|++|+|.|..+..|..|+++ +++++|.|+ |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            467788888888888888888888888888887 577888887 6

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.87  E-value=2.3e-10  Score=89.34  Aligned_cols=53  Identities=21%  Similarity=0.349  Sum_probs=44.2

Q ss_pred             hhhhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCChHHHH
Q 007898          156 IKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFI  211 (585)
Q Consensus       156 L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~  211 (585)
                      |..|+++|+++++|+|++|++.|.....|.   ++ .++++|.|+ |++.|....++.
T Consensus         2 L~~h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            2 IETDERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCS
T ss_pred             hhhHHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCcccc
Confidence            667899999999999999999999888776   56 688999999 999998766543

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.87  E-value=9.6e-10  Score=79.87  Aligned_cols=43  Identities=26%  Similarity=0.401  Sum_probs=37.5

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      .|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            2 SSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            377888899999999999999999999999888 688899888 7

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=4.3e-10  Score=81.67  Aligned_cols=43  Identities=23%  Similarity=0.437  Sum_probs=30.4

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +|+++|+++++|+|++|+|.|..+..|..|+++ +++++|.|+ |
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            466677777777777777777777777777766 566777776 5

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.86  E-value=1.2e-09  Score=82.53  Aligned_cols=43  Identities=21%  Similarity=0.364  Sum_probs=23.3

Q ss_pred             ccCCccccccccCCcccChhHHHHHHH-H-hCCcceecC-CCCccC
Q 007898          163 KHGEKKWKCDKCSKRYAVQSDWKAHSK-T-CGTREYRCD-CGTLFS  205 (585)
Q Consensus       163 Htgekpy~C~~CgK~F~~~s~L~~H~r-~-hgekpy~C~-Cgk~F~  205 (585)
                      |.++++|.|++|++.|.....|.+|++ + .++++|.|+ |++.|.
T Consensus         7 ~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~   52 (54)
T 2eps_A            7 GSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS   52 (54)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence            445555555555555555555555554 3 345555555 555554

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.86  E-value=6.3e-10  Score=80.76  Aligned_cols=43  Identities=30%  Similarity=0.492  Sum_probs=34.2

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      .|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+ |
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            377788888888888888888888888888877 577888887 6

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.86  E-value=1.2e-09  Score=79.23  Aligned_cols=45  Identities=16%  Similarity=0.155  Sum_probs=42.0

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      +|+++|.             ++++|+|++|+       +.|.....|.+|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            2 SSGSSGM-------------GEKTWKCRECD-------MCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSC-------------CCCCCCCSSSC-------CCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CCcCccC-------------CCcCeECCCCC-------cccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            5777887             89999999996       999999999999999999999999988

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.85  E-value=1.2e-09  Score=79.19  Aligned_cols=45  Identities=20%  Similarity=0.199  Sum_probs=41.9

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|.+|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            2 SSGSSGT-------------GKKPYKCNECG-------KVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCS-------------CCSSCBCTTTC-------CBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCCcCCC-------------CCcCeECCCCC-------CeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            5777777             89999999996       999999999999999999999999998

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.85  E-value=7.8e-10  Score=87.02  Aligned_cols=53  Identities=17%  Similarity=0.281  Sum_probs=39.7

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccc-ccCCcccChhHHHHHHHHh
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCD-KCSKRYAVQSDWKAHSKTC  191 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~-~CgK~F~~~s~L~~H~r~h  191 (585)
                      ++++|.|++|+       +.|. ...|..|+++ +++++|+|+ +|++.|..+..|..|+++|
T Consensus         7 ~~~~~~C~~C~-------k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~h   60 (66)
T 2eod_A            7 GKRTQPCTYCT-------KEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDS   60 (66)
T ss_dssp             CCCEEECSSSC-------CEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHHHHTT
T ss_pred             CCCCeeccccC-------CccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHHHHhh
Confidence            56777777774       7777 7777777777 777777777 7777777777777777763

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.85  E-value=1.5e-09  Score=86.54  Aligned_cols=55  Identities=31%  Similarity=0.645  Sum_probs=37.1

Q ss_pred             cccCCccccccc--cCCcccChhHHHHHHHH-hCCcceec--C-CCCccCChHHHHHHHHH
Q 007898          162 RKHGEKKWKCDK--CSKRYAVQSDWKAHSKT-CGTREYRC--D-CGTLFSRRDSFITHRAF  216 (585)
Q Consensus       162 ~Htgekpy~C~~--CgK~F~~~s~L~~H~r~-hgekpy~C--~-Cgk~F~~~s~L~~H~~~  216 (585)
                      .+..+++|.|.+  |++.|.....|.+|+++ +++++|.|  + |++.|..+..|.+|+++
T Consensus        11 ~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A           11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT   71 (72)
T ss_dssp             CCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTT
T ss_pred             CccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhc
Confidence            344566677766  77777777777777776 56677777  3 77777777777777643

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.3e-09  Score=79.23  Aligned_cols=42  Identities=21%  Similarity=0.411  Sum_probs=36.8

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      .|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em2_A            2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSS
T ss_pred             CCCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            478888899999999999999999999999888 688889887

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.3e-09  Score=79.18  Aligned_cols=42  Identities=26%  Similarity=0.491  Sum_probs=38.5

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      +|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             CcccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            588999999999999999999999999999999 688999996

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.2e-09  Score=79.15  Aligned_cols=45  Identities=20%  Similarity=0.204  Sum_probs=42.0

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|.+|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGT-------------GEKLYNCKECG-------KSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSS-------------CCCCCCBTTTT-------BCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CCcccCC-------------CCCCeECCCCC-------CccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            5777887             89999999996       999999999999999999999999998

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.2e-09  Score=79.23  Aligned_cols=45  Identities=16%  Similarity=0.141  Sum_probs=42.1

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      +|+++|.             ++++|+|++|+       +.|.....|..|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGT-------------GEKPYECSVCG-------KAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCS-------------SCCSEECSSSC-------CEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             CccCCcC-------------CCCCeeCCCcC-------CccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            5777887             89999999996       999999999999999999999999998

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.84  E-value=1.2e-09  Score=79.10  Aligned_cols=45  Identities=13%  Similarity=0.063  Sum_probs=42.0

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|.+|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGT-------------GVKPYGCSQCA-------KTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSC-------------CCCSEECSSSS-------CEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ccccCCC-------------CCCceECCCCC-------chhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5777887             89999999996       999999999999999999999999988

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.84  E-value=1.4e-09  Score=78.77  Aligned_cols=45  Identities=13%  Similarity=0.031  Sum_probs=42.0

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      +|+++|.             ++++|+|++|+       +.|.....|..|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~~~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGT-------------GEKPHECRECG-------KSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCC-------------CCCSCBCTTTC-------CBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CCccccC-------------CCCCeeCCCCC-------chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5777887             89999999996       999999999999999999999999988

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.83  E-value=1.2e-09  Score=79.34  Aligned_cols=45  Identities=22%  Similarity=0.217  Sum_probs=42.0

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      +|+++|.             ++++|+|++|+       +.|.....|.+|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGT-------------GEKPYECKECG-------KAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCS-------------SSCSCBCSSSC-------CBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCCccC-------------CCCceECCCCC-------chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5777887             89999999996       999999999999999999999999988

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.83  E-value=1.3e-09  Score=79.16  Aligned_cols=45  Identities=18%  Similarity=0.181  Sum_probs=41.9

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|..|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGT-------------GEKRYKCNECG-------KVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCT-------------TSCCEECSSSC-------CEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCccCCC-------------CCcCcCCCCCc-------chhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            5777787             89999999996       999999999999999999999999988

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=1.2e-09  Score=79.28  Aligned_cols=45  Identities=18%  Similarity=0.108  Sum_probs=42.2

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|.+|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~~~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGS-------------STKSHQCHECG-------RGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCC-------------CSCSEECSSSC-------CEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CCcCCCC-------------CCCCeECCcCC-------CccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5778887             89999999996       999999999999999999999999998

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.4e-09  Score=78.85  Aligned_cols=45  Identities=22%  Similarity=0.215  Sum_probs=42.1

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|.+|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGS-------------GEKPYVCDYCG-------KAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTC-------------CCCSEECSSSC-------CEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCC-------------CCCCeECCCCC-------hhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            5777887             89999999996       999999999999999999999999998

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=2e-09  Score=76.26  Aligned_cols=41  Identities=17%  Similarity=0.325  Sum_probs=36.5

Q ss_pred             hhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          159 HFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       159 H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      |+++|+++++|+|++|++.|..+..|.+|+++ +++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            67889999999999999999999999999998 688999884

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.5e-09  Score=78.73  Aligned_cols=45  Identities=16%  Similarity=0.158  Sum_probs=42.0

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|..|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~~~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGT-------------GEKPFKCGECG-------KSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCS-------------SCCSEECTTTC-------CEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCC-------------CCCCeECCCCC-------cccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5777777             89999999996       999999999999999999999999998

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.6e-09  Score=78.45  Aligned_cols=45  Identities=20%  Similarity=0.230  Sum_probs=42.0

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|..|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGT-------------GEKPYKCNECG-------KAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCS-------------SCCTTCCTTTC-------CCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCcCCC-------------CCcCcCCCCCC-------CccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            5777887             89999999996       999999999999999999999999998

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.3e-09  Score=79.01  Aligned_cols=45  Identities=16%  Similarity=0.132  Sum_probs=41.9

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      +|+++|.             ++++|+|++|+       +.|.....|.+|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~~~~~C~~C~-------k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            2 SSGSSGT-------------GEKPYKCNECG-------KVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSCCC-------------CCCSSEETTTT-------EECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCC-------------CCCCeECCCcC-------hhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4777777             89999999996       999999999999999999999999998

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=2e-09  Score=78.18  Aligned_cols=38  Identities=18%  Similarity=0.203  Sum_probs=36.8

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      ++++|+|++|+       +.|.....|..|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C~-------k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            9 VEKPYKCEDCG-------KGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSSCBCSSSC-------CBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCeeCcccC-------chhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            89999999996       999999999999999999999999998

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.4e-09  Score=78.96  Aligned_cols=45  Identities=18%  Similarity=0.183  Sum_probs=41.8

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      .|+++|.             ++++|.|++|+       +.|.....|..|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            2 SSGSSGT-------------GEKPYKCHECG-------KVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCTT-------------CCCCEECTTTC-------CEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCCcCCC-------------CCCCeECCCCC-------chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4777777             89999999996       999999999999999999999999998

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.82  E-value=1.5e-09  Score=76.98  Aligned_cols=41  Identities=20%  Similarity=0.460  Sum_probs=35.4

Q ss_pred             hhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          159 HFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       159 H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      |+++|+++++|+|++|++.|..+..|.+|+++ +++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            67788888999999999999999999999888 688888884

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.2e-09  Score=79.19  Aligned_cols=45  Identities=18%  Similarity=0.149  Sum_probs=42.0

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|.+|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGT-------------GEKPYICAECG-------KAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTS-------------SCCSEECSSSC-------CEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             CcccCCC-------------CCcCeECCCCC-------hhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5777887             89999999996       999999999999999999999999987

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.7e-09  Score=77.51  Aligned_cols=42  Identities=21%  Similarity=0.379  Sum_probs=37.7

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      +|+++|+++++|.|++|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            588899999999999999999999999999988 688999885

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.6e-09  Score=78.56  Aligned_cols=42  Identities=26%  Similarity=0.464  Sum_probs=38.0

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2em3_A            2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588899999999999999999999999999999 688999986

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.8e-09  Score=78.33  Aligned_cols=45  Identities=20%  Similarity=0.242  Sum_probs=41.6

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      .|+++|.             ++++|+|++|+       +.|.....|.+|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            2 SSGSSGT-------------GEKPFDCIDCG-------KAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCC-------------CCCSBCCTTTC-------CCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCCcC-------------CCCCeECCCCC-------ceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3677777             89999999996       999999999999999999999999988

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.5e-09  Score=78.68  Aligned_cols=45  Identities=11%  Similarity=0.101  Sum_probs=41.9

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      +|+++|.             ++++|+|++|+       +.|.....|.+|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~~~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGT-------------GEKPFKCDICG-------KSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSS-------------SSCSCCCSSSC-------CCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCC-------------CCCCcCCCcCC-------chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5777787             89999999996       999999999999999999999999988

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.5e-09  Score=78.65  Aligned_cols=45  Identities=13%  Similarity=0.152  Sum_probs=42.0

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      +|+++|.             ++++|+|++|+       +.|.....|.+|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~~~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGT-------------GEKPYKCSDCG-------KSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCS-------------SCCSCBCSSSC-------CBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCC-------------CCCCccCCccC-------hhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            5778887             89999999996       999999999999999999999999998

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.4e-09  Score=78.95  Aligned_cols=45  Identities=18%  Similarity=0.169  Sum_probs=41.9

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      .|+++|.             ++++|+|++|+       +.|.....|.+|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGT-------------GEKPYKCNECG-------KVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCC-------------CSSSEECSSSC-------CEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             CcccCCC-------------CCCCeECCCCC-------chhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            4777777             89999999996       999999999999999999999999998

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.82  E-value=1.9e-09  Score=78.07  Aligned_cols=42  Identities=21%  Similarity=0.434  Sum_probs=36.9

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      +|+++|+++++|+|++|++.|..+..|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ep1_A            2 SSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred             ccccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            588889999999999999999999999999888 688888885

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=7.7e-10  Score=87.05  Aligned_cols=59  Identities=15%  Similarity=0.215  Sum_probs=53.7

Q ss_pred             cccCcccccccCcccccccccchhcccccCccccccchhhhccccccccC-CCCcccCCCCCccCChhhhhhhhccccCC
Q 007898           88 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCP-EPNCVHHDPSRALGDLTGIKKHFCRKHGE  166 (585)
Q Consensus        88 ~~~kpy~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~-~CgC~~~~~~k~F~~~~~L~~H~r~Htge  166 (585)
                      -++++|.|++|++.|. ...|..|+++ .             ++++|.|+ +|+       +.|..+..|..|+++|...
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~-~-------------~~~p~~C~~~C~-------k~f~~~~~L~~H~~~hc~~   63 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ-C-------------PRLPVACPNQCG-------VGTVAREDLPGHLKDSCNT   63 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH-C-------------SSSEEECTTCCS-------CCEEETTTHHHHHHTTSSS
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH-c-------------CCcCccCCcccC-------cccccHHHHHHHHHhhccc
Confidence            4578999999999999 9999999988 6             89999999 996       9999999999999999776


Q ss_pred             cc
Q 007898          167 KK  168 (585)
Q Consensus       167 kp  168 (585)
                      ++
T Consensus        64 ~~   65 (66)
T 2eod_A           64 AL   65 (66)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.4e-09  Score=78.94  Aligned_cols=45  Identities=16%  Similarity=0.136  Sum_probs=42.0

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|..|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGT-------------GEKPYECSICG-------KSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSS-------------CCCSEECSSSC-------CEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCC-------------CCcCcCCCCCC-------cccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5777787             89999999996       999999999999999999999999988

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.8e-09  Score=78.34  Aligned_cols=42  Identities=24%  Similarity=0.419  Sum_probs=36.4

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      +|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enf_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred             CCCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence            578888889999999999999999999999888 688888885

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.7e-09  Score=78.42  Aligned_cols=42  Identities=19%  Similarity=0.429  Sum_probs=36.3

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      +|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq2_A            2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred             CcccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            578888889999999999999999999999888 688888885

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.2e-09  Score=79.12  Aligned_cols=45  Identities=13%  Similarity=0.070  Sum_probs=42.1

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      +|+++|+             ++++|.|++|+       +.|.....|.+|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            2 SSGSSGT-------------GERPHKCNECG-------KSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSS-------------CCCSEECSSSC-------CEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CCcCCcC-------------CCCCeeCCCCC-------hhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5777887             89999999996       999999999999999999999999998

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.6e-09  Score=78.61  Aligned_cols=45  Identities=18%  Similarity=0.141  Sum_probs=41.7

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      .|+++|.             ++++|+|++|+       +.|.....|.+|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGT-------------GGKHFECTECG-------KAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSS-------------SSCCEECSSSC-------CEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccccC-------------CCCCeECCCCC-------chhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4777777             89999999996       999999999999999999999999988

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=1.5e-09  Score=78.58  Aligned_cols=45  Identities=16%  Similarity=0.123  Sum_probs=42.0

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      +|+++|.             ++++|+|++|+       +.|.....|..|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~~~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGS-------------GEKSHTCDECG-------KNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCC-------------CCSSEECTTTC-------CEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             CccccCC-------------CCCCeECCCcC-------cccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5777887             89999999996       999999999999999999999999988

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.2e-09  Score=79.41  Aligned_cols=45  Identities=18%  Similarity=0.236  Sum_probs=42.2

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|..|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGS-------------GERPYGCNECG-------KNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCS-------------CCCCEECSSSC-------CEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCC-------------CCCCEEccccC-------cccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            5778887             89999999996       999999999999999999999999988

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.7e-09  Score=77.42  Aligned_cols=42  Identities=24%  Similarity=0.497  Sum_probs=38.2

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      +|+++|+++++|+|++|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            588899999999999999999999999999999 688999985

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.2e-09  Score=79.19  Aligned_cols=45  Identities=20%  Similarity=0.236  Sum_probs=42.0

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|.+|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGT-------------GERPYICTVCG-------KAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCS-------------CCCSEECTTTC-------CEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCC-------------CCCCcCCCCCC-------chhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            5777887             89999999996       999999999999999999999999988

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.8e-09  Score=78.25  Aligned_cols=42  Identities=26%  Similarity=0.487  Sum_probs=37.4

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      +|+++|+++++|+|++|+|.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eow_A            2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred             CccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence            588889999999999999999999999999988 688999885

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.81  E-value=1.8e-09  Score=78.24  Aligned_cols=45  Identities=20%  Similarity=0.152  Sum_probs=41.9

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      .|+++|.             ++++|.|++|+       +.|.....|.+|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            2 SSGSSGT-------------GEKPYNCKECG-------KSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSCC-------------CCCSEECSSSC-------CEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCC-------------CCcCeECCccc-------cccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            4777777             89999999996       999999999999999999999999998

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.4e-09  Score=78.97  Aligned_cols=45  Identities=18%  Similarity=0.225  Sum_probs=42.0

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|..|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~~~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            2 SSGSSGS-------------GEKPYKCNECG-------KVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSS-------------SSCSEECSSSC-------CEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CCcccCC-------------CCCCEeCCcCC-------CccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            5777887             89999999996       999999999999999999999999998

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.81  E-value=1.8e-09  Score=78.44  Aligned_cols=42  Identities=21%  Similarity=0.487  Sum_probs=37.2

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      .|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emj_A            2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred             CCCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588889999999999999999999999999988 688899886

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=2e-09  Score=78.18  Aligned_cols=38  Identities=24%  Similarity=0.268  Sum_probs=36.8

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      ++++|.|++|+       +.|.....|.+|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            9 GEKPYGCSECG-------KAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCBCSSSC-------CBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCCcCCCccC-------hhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            89999999996       999999999999999999999999998

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.81  E-value=1.9e-09  Score=78.33  Aligned_cols=42  Identities=24%  Similarity=0.529  Sum_probs=36.6

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      +|+++|+++++|.|++|++.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yth_A            2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred             CcccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence            588888899999999999999999999999888 688888886

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.80  E-value=1.7e-09  Score=78.51  Aligned_cols=45  Identities=16%  Similarity=0.177  Sum_probs=41.7

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      .|+++|.             ++++|+|++|+       +.|.....|.+|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGT-------------GEKPFKCVECG-------KGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCC-------------CCCSBCCSSSC-------CCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCC-------------CCCCcccCccC-------cccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4677777             89999999996       999999999999999999999999998

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.80  E-value=1.9e-09  Score=78.23  Aligned_cols=45  Identities=18%  Similarity=0.141  Sum_probs=41.6

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      .|+++|.             ++++|+|++|+       +.|.....|.+|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            2 SSGSSGT-------------GEKPYKCEECG-------KGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSS-------------CCCSEECSSSC-------CEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCC-------------CCcCccCCCcc-------chhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            3677777             89999999996       999999999999999999999999998

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.3e-09  Score=79.15  Aligned_cols=45  Identities=20%  Similarity=0.226  Sum_probs=42.0

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|.+|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGT-------------GVKPYMCNECG-------KAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSS-------------CCCSEECSSSC-------CEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             CcccccC-------------CCcCeECCCCC-------chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5777887             89999999996       999999999999999999999999988

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.9e-09  Score=78.22  Aligned_cols=42  Identities=24%  Similarity=0.473  Sum_probs=36.4

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      .|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq1_A            2 SSGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred             CcccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            578888889999999999999999999999888 688888885

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.4e-09  Score=78.86  Aligned_cols=45  Identities=18%  Similarity=0.151  Sum_probs=42.0

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      +|+++|.             ++++|+|++|+       +.|.....|..|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            2 SSGSSGT-------------GENPYECHECG-------KAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCC-------------SSCCEECSSSC-------CEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCC-------------CCcCcCCCCCC-------cccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            5777787             89999999996       999999999999999999999999988

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.9e-09  Score=78.14  Aligned_cols=42  Identities=24%  Similarity=0.429  Sum_probs=36.2

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      +|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yti_A            2 SSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred             CCCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence            578888888999999999999999999999888 688888885

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=2.6e-09  Score=77.56  Aligned_cols=42  Identities=19%  Similarity=0.416  Sum_probs=37.5

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      .|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            478889999999999999999999999999999 688999886

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=1.3e-09  Score=79.00  Aligned_cols=45  Identities=16%  Similarity=0.153  Sum_probs=41.9

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|.+|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            2 SSGSSGT-------------GEKPYKCNECG-------KVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCC-------------CCSSEECSSSC-------CEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             CcCcCCC-------------CCCCeECCcCC-------chhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            5777777             89999999996       999999999999999999999999998

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.80  E-value=2.7e-09  Score=77.46  Aligned_cols=42  Identities=21%  Similarity=0.442  Sum_probs=37.6

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      .|+++|+++++|+|++|+|.|..+..|..|+++ +++++|.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2en9_A            2 SSGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            578899999999999999999999999999998 688999986

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=2.2e-09  Score=77.87  Aligned_cols=42  Identities=21%  Similarity=0.400  Sum_probs=35.8

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      .|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2emg_A            2 SSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred             CCCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            478888888888888888888888888888888 688888885

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=1.6e-09  Score=78.64  Aligned_cols=42  Identities=17%  Similarity=0.333  Sum_probs=37.7

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      +|+++|+++++|+|++|++.|..+..|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2eoz_A            2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS   44 (46)
T ss_dssp             CSCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred             CccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            588899999999999999999999999999988 688999886

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=2.2e-09  Score=77.92  Aligned_cols=42  Identities=17%  Similarity=0.411  Sum_probs=37.3

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      .|+++|+++++|+|++|+|.|.....|.+|+++ +++++|+|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence            478889999999999999999999999999988 688999885

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=1.7e-09  Score=78.51  Aligned_cols=42  Identities=21%  Similarity=0.449  Sum_probs=36.3

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      .|+++|+++++|+|++|+|.|..+..|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            578888888999999999999998999999888 688888886

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=1.8e-09  Score=78.32  Aligned_cols=45  Identities=16%  Similarity=0.162  Sum_probs=42.0

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|.+|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~~~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGS-------------GEKPFKCEECG-------KRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCC-------------CCCSEEETTTT-------EEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             CcccCCC-------------CCCCeeCCCCC-------cccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5777887             89999999996       999999999999999999999999988

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=2.2e-09  Score=77.91  Aligned_cols=42  Identities=26%  Similarity=0.482  Sum_probs=35.9

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      +|+++|+++++|+|++|+|.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2em6_A            2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred             CCccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence            578888888889998898888888888888888 688888885

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=1.9e-09  Score=78.17  Aligned_cols=45  Identities=22%  Similarity=0.213  Sum_probs=41.7

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|.+|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            2 SSGSSGT-------------GEKPYRCAECG-------KAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSS-------------CCCSEECSSSC-------CEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCC-------------CCCCeECCCCC-------chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            5777887             89999999996       999999999999999999999999986

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=1.7e-09  Score=77.61  Aligned_cols=38  Identities=16%  Similarity=0.086  Sum_probs=36.8

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      ++++|+|++|+       +.|.....|..|+++|+++++|+|++|
T Consensus         7 ~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            7 GEKPFGCSCCE-------KAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             SCCCEECSSSS-------CEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCcCccCCCCC-------cccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            89999999996       999999999999999999999999988

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=1.7e-09  Score=78.47  Aligned_cols=45  Identities=18%  Similarity=0.164  Sum_probs=41.9

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      .|+++|.             ++++|.|++|+       +.|.....|.+|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGS-------------GEKPYKCSECG-------KAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSC-------------CCCSEECSSSC-------CEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CCccccC-------------CCcCeECCCCC-------CeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            5777787             89999999996       999999999999999999999999988

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.79  E-value=2.2e-09  Score=80.95  Aligned_cols=51  Identities=14%  Similarity=0.156  Sum_probs=47.0

Q ss_pred             CCccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHH-hCCccee
Q 007898          147 SRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYR  197 (585)
Q Consensus       147 ~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~  197 (585)
                      .+.|.....|..|+++|+++++|.|++|++.|.....|..|+++ ++++||.
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            47888999999999999999999999999999999999999999 7888874

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.79  E-value=1.8e-09  Score=78.22  Aligned_cols=45  Identities=13%  Similarity=0.023  Sum_probs=42.0

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|..|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGT-------------GEKPCKCTECG-------KAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCC-------------CCCSEECSSSC-------CEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             cCcccCC-------------CCCCeeCCCCC-------CccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            5777787             89999999996       999999999999999999999999988

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=2.2e-09  Score=77.86  Aligned_cols=42  Identities=19%  Similarity=0.431  Sum_probs=36.5

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      .|+++|+++++|+|++|+|.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS   44 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence            478888899999999999999999999999888 688888886

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=2.2e-09  Score=77.03  Aligned_cols=42  Identities=19%  Similarity=0.366  Sum_probs=37.8

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      +|+++|+++++|+|++|++.|.....|..|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            588899999999999999999999999999999 688999884

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=2.1e-09  Score=77.83  Aligned_cols=42  Identities=24%  Similarity=0.480  Sum_probs=35.9

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      +|+++|+++++|+|++|+|.|.....|..|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2ytf_A            2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            578888888888888888888888888888888 688888885

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.78  E-value=2.1e-09  Score=81.17  Aligned_cols=45  Identities=16%  Similarity=0.269  Sum_probs=42.2

Q ss_pred             ccccccccCCCCcccCCCCCccCChhhhhhhhc-cccCCccccccccCCcccC
Q 007898          129 IRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFC-RKHGEKKWKCDKCSKRYAV  180 (585)
Q Consensus       129 ~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r-~Htgekpy~C~~CgK~F~~  180 (585)
                      .++++|.|++|+       +.|.....|.+|++ +|+++++|+|++|++.|..
T Consensus         8 ~~~k~~~C~~C~-------k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            8 SVGKPYICQSCG-------KGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CSSCCEECSSSC-------CEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCeECCCCC-------cccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            388999999996       99999999999997 9999999999999999975

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=2.5e-09  Score=77.46  Aligned_cols=42  Identities=21%  Similarity=0.468  Sum_probs=37.5

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      .|+++|+++++|+|++|+|.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~   44 (46)
T 2eor_A            2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CSSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred             CCCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence            488889999999999999999999999999988 688999886

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.78  E-value=2.4e-09  Score=77.70  Aligned_cols=45  Identities=11%  Similarity=0.047  Sum_probs=41.6

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      .|+++|.             ++++|+|++|+       +.|.....|..|+++|+++++|+|++|
T Consensus         2 ~h~~~h~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            2 SSGSSGA-------------GVNPYKCSQCE-------KSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             CSCCSSC-------------CCCSEECSSSS-------CEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCC-------------CCCCeECCCCC-------cccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4677777             89999999996       999999999999999999999999988

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=1.7e-09  Score=77.52  Aligned_cols=42  Identities=21%  Similarity=0.412  Sum_probs=37.2

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      .|+++|+++++|+|++|++.|..+..|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            488899999999999999999999999999988 688899885

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=2.5e-09  Score=77.64  Aligned_cols=42  Identities=19%  Similarity=0.400  Sum_probs=38.5

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      +|+++|.++++|+|++|++.|.....|..|+++ +++++|.|+
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588899999999999999999999999999999 689999996

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=2e-09  Score=77.93  Aligned_cols=42  Identities=21%  Similarity=0.486  Sum_probs=36.1

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      +|+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yrj_A            2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred             CCccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            578888888889999999999888888888888 688888885

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=1.7e-09  Score=76.67  Aligned_cols=41  Identities=22%  Similarity=0.468  Sum_probs=34.5

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceec
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRC  198 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C  198 (585)
                      +|+++|+++++|+|++|++.|.....|..|+++ +++++|.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            477888888888888888888888888888888 68888887

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.78  E-value=2e-09  Score=77.91  Aligned_cols=42  Identities=21%  Similarity=0.436  Sum_probs=35.3

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      +|+++|+++++|+|++|+|.|..+..|.+|+++ ++++||.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~   44 (46)
T 2yts_A            2 SSGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred             CCCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence            578888888888888888888888888888888 678888885

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=2.3e-09  Score=77.94  Aligned_cols=38  Identities=24%  Similarity=0.320  Sum_probs=36.8

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      ++++|+|++|+       +.|.....|.+|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            9 GEKPYKCMECG-------KAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCSSSBTTTT-------BCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCCcCCCCCC-------chhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            89999999996       999999999999999999999999998

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.77  E-value=9.6e-10  Score=85.77  Aligned_cols=55  Identities=13%  Similarity=0.294  Sum_probs=48.7

Q ss_pred             cchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHH
Q 007898          108 LQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWK  185 (585)
Q Consensus       108 L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~  185 (585)
                      |..|+++|.             ++++|.|++||       +.|.....|.   ++|+++++|+|++|++.|.....+.
T Consensus         2 L~~h~~~H~-------------~~k~~~C~~C~-------k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~~~   56 (62)
T 1vd4_A            2 IETDERDST-------------NRASFKCPVCS-------STFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDESAM   56 (62)
T ss_dssp             CCCCSSSCC-------------SSSEEECSSSC-------CEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTTCS
T ss_pred             hhhHHHHcC-------------CCCCccCCCCC-------chhccHHHhH---hhcCCCCCEECCCCCCccccCcccc
Confidence            678888888             99999999996       9999988886   8999999999999999998876553

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.77  E-value=2.1e-09  Score=85.58  Aligned_cols=55  Identities=24%  Similarity=0.487  Sum_probs=50.9

Q ss_pred             cccccccCC--CCcccCCCCCccCChhhhhhhhccccCCccccccc--cCCcccChhHHHHHHHHh
Q 007898          130 RKKVYVCPE--PNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK--CSKRYAVQSDWKAHSKTC  191 (585)
Q Consensus       130 ~~k~y~C~~--CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~--CgK~F~~~s~L~~H~r~h  191 (585)
                      ..++|.|.+  |+       +.|.....|..|+++|+++++|+|.+  |++.|..+..|.+|+++|
T Consensus        14 ~~~~~~C~~~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           14 RIRSHICSHPGCG-------KTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCEECSSTTTC-------CEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             ccCceeCCCCCCc-------cccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            778999998  85       99999999999999999999999975  999999999999998753

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=2.1e-09  Score=77.96  Aligned_cols=45  Identities=13%  Similarity=0.132  Sum_probs=41.6

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      .|+++|.             ++++|+|++|+       +.|.....|.+|+++|+++++|+|++|
T Consensus         2 ~H~~~h~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGT-------------GEKPYKCEKCG-------KGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCS-------------SCCSEEETTTT-------EEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCC-------------CCCCeECCCCC-------CccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            3677777             89999999996       999999999999999999999999998

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.77  E-value=2.4e-09  Score=75.95  Aligned_cols=40  Identities=25%  Similarity=0.472  Sum_probs=36.3

Q ss_pred             hhccccCCccccccccCCcccChhHHHHHHHH-hCCcceec
Q 007898          159 HFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRC  198 (585)
Q Consensus       159 H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C  198 (585)
                      |+++|+++++|+|++|++.|.....|..|+++ +++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            78889999999999999999999999999988 78899988

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.76  E-value=3.3e-09  Score=75.15  Aligned_cols=40  Identities=15%  Similarity=0.370  Sum_probs=36.2

Q ss_pred             hhccccCCccccccccCCcccChhHHHHHHHH-hCCcceec
Q 007898          159 HFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRC  198 (585)
Q Consensus       159 H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C  198 (585)
                      |+++|+++++|+|++|++.|..+..|..|+++ +++++|.|
T Consensus         2 H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            67889999999999999999999999999999 78899988

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=1.9e-09  Score=78.18  Aligned_cols=45  Identities=18%  Similarity=0.174  Sum_probs=41.9

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      .|+++|.             ++++|.|++|+       +.|.....|..|+++|+++++|+|++|
T Consensus         2 ~h~~~H~-------------~~~~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            2 SSGSSGS-------------GEKPYGCNECG-------KTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCCCC-------------SSCCEEETTTT-------EEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCCccC-------------CCcCeECCCCC-------cccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            5777777             89999999996       999999999999999999999999998

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=2.6e-09  Score=77.47  Aligned_cols=45  Identities=16%  Similarity=0.107  Sum_probs=41.6

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      .|+++|.             ++++|.|++|+       +.|.....|..|+++|+++++|+|++|
T Consensus         2 ~h~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGS-------------GEKPFKCEECG-------KGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCC-------------CCCSEECSSSC-------CEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCC-------------CCCCcCCCCCC-------CcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            4677777             89999999996       999999999999999999999999998

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=2.2e-09  Score=77.10  Aligned_cols=42  Identities=19%  Similarity=0.404  Sum_probs=35.9

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      .|+++|+++++|+|++|++.|.....|..|+++ .++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            578888888889998899988888888888888 688888884

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.76  E-value=2.8e-09  Score=77.46  Aligned_cols=41  Identities=29%  Similarity=0.470  Sum_probs=33.6

Q ss_pred             hhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          159 HFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       159 H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      |+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS   44 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence            67788888888888888888888888888887 677888885

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.3e-09  Score=77.75  Aligned_cols=42  Identities=17%  Similarity=0.282  Sum_probs=38.3

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      +|+++|+++++|+|++|++.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            588899999999999999999999999999999 688999986

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=3.9e-09  Score=76.69  Aligned_cols=45  Identities=24%  Similarity=0.238  Sum_probs=41.8

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhc-cccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFC-RKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r-~Htgekpy~C~~C  174 (585)
                      .|+++|.             ++++|.|++|+       +.|.....|..|++ +|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            2 SSGSSGT-------------GKKPYECIECG-------KAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCC-------------CCCSBCCSSSC-------CCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ccccccC-------------CCCCEECCccC-------chhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            4777777             89999999996       99999999999999 9999999999988

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=2.8e-09  Score=77.27  Aligned_cols=45  Identities=16%  Similarity=0.119  Sum_probs=41.6

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      .|+++|.             ++++|.|++|+       +.|.....|..|+++|+++++|+|.+|
T Consensus         2 ~H~~~H~-------------~~~~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGS-------------REKSHQCRECG-------EIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSS-------------CCCCEECTTTC-------CEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CcccccC-------------CCCCEEccccC-------hhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4677777             89999999996       999999999999999999999999988

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.75  E-value=2.5e-09  Score=77.41  Aligned_cols=42  Identities=24%  Similarity=0.500  Sum_probs=36.5

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      +|+++|+++++|.|++|+|.|.....|.+|+++ +++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eq3_A            2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred             CcccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            578888899999999999999999999999888 688888885

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=2.8e-09  Score=75.68  Aligned_cols=40  Identities=23%  Similarity=0.429  Sum_probs=34.0

Q ss_pred             hhccccCCccccccccCCcccChhHHHHHHHH-hCCcceec
Q 007898          159 HFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRC  198 (585)
Q Consensus       159 H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C  198 (585)
                      |+++|+++++|+|++|++.|.....|.+|+++ +++++|.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            67788888888888888888888888888888 68888877

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.75  E-value=5.1e-09  Score=75.19  Aligned_cols=42  Identities=14%  Similarity=0.195  Sum_probs=37.4

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      .|+++|+++++|.|++|+|.|.....|..|+++ +++++|.|+
T Consensus         2 ~h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            2 SSGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CCSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            378889999999999999999999999999999 688999985

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.74  E-value=3.6e-09  Score=76.79  Aligned_cols=41  Identities=22%  Similarity=0.472  Sum_probs=34.1

Q ss_pred             hhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          159 HFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       159 H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      |+++|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2enh_A            3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            67788888888888888888888888888888 678888885

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=2.9e-09  Score=77.28  Aligned_cols=38  Identities=21%  Similarity=0.165  Sum_probs=36.8

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      ++++|+|++|+       +.|.....|..|+++|+++++|+|++|
T Consensus         9 ~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            9 GEKPYKCVECG-------KGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             SCCSEECSSSC-------CEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCeECcccC-------chhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            89999999996       999999999999999999999999998

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=3.7e-09  Score=76.64  Aligned_cols=41  Identities=27%  Similarity=0.455  Sum_probs=26.8

Q ss_pred             hccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          160 FCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       160 ~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +++|+++++|+|++|+|.|.....|.+|+++ +++++|.|+ |
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            4556666666666666666666666666666 466666666 5

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.73  E-value=4.4e-09  Score=76.28  Aligned_cols=41  Identities=20%  Similarity=0.301  Sum_probs=30.6

Q ss_pred             hccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          160 FCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       160 ~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      +++|+++++|.|++|+|.|.....|..|+++ +++++|.|+ |
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4567777777777777777777777777777 577777776 6

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.72  E-value=2.2e-09  Score=77.07  Aligned_cols=42  Identities=14%  Similarity=0.260  Sum_probs=37.2

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      +|+++|+++++|+|++|++.|.....|..|+++ +++++|.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            588899999999999999999999999999998 688999883

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=2.2e-09  Score=87.41  Aligned_cols=66  Identities=23%  Similarity=0.399  Sum_probs=57.9

Q ss_pred             hhhhhhhhccccCCccccccccCCcccChhHHHHHHHHhCCcceecC-CCCccCChHHHHHHHHHhhhc
Q 007898          153 LTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSRRDSFITHRAFCDAL  220 (585)
Q Consensus       153 ~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~hgekpy~C~-Cgk~F~~~s~L~~H~~~h~~~  220 (585)
                      +..|..|+++|.++++|.|.+|++.|. ...|..|+...++++|.|+ |++.|.+ ..|..|+++|...
T Consensus         2 ~~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~~~c~~~~~~C~~C~~~~~~-~~l~~H~~~c~~~   68 (75)
T 2d9k_A            2 SSGSSGHEETECPLRLAVCQHCDLELS-ILKLKEHEDYCGARTELCGNCGRNVLV-KDLKTHPEVCGRE   68 (75)
T ss_dssp             CCCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHHHHHHHHCEEECSSSCCEEET-TGGGTHHHHBTTB
T ss_pred             chHHHhhCcccCCCcccCCcccChHhh-HHHHHHHHhHcCCCceEcccCCCcCcH-HHHHHHHHHccCC
Confidence            356889999999999999999999995 9999999933899999999 9999885 8899999776643

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.71  E-value=6.3e-09  Score=75.10  Aligned_cols=40  Identities=23%  Similarity=0.449  Sum_probs=25.6

Q ss_pred             cccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-CC
Q 007898          162 RKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CG  201 (585)
Q Consensus       162 ~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cg  201 (585)
                      .|+++++|+|++|+|.|..+..|.+|+++ +++++|.|+ ||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            45666666666666666666666666666 466666666 64

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.71  E-value=5.3e-09  Score=75.20  Aligned_cols=41  Identities=24%  Similarity=0.438  Sum_probs=36.7

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceec
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRC  198 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C  198 (585)
                      .|+++|+++++|+|++|++.|.....|..|+++ +++++|.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            588899999999999999999999999999988 68899887

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.70  E-value=4.4e-09  Score=76.30  Aligned_cols=45  Identities=18%  Similarity=0.189  Sum_probs=41.3

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      .|+++|.             ++++|+|++|+       +.|.....|..|+++|+++++|+|++|
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            2 SSGSSGS-------------GEKPFKCKECG-------KAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCC-------------CCCSEECSSSC-------CEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCC-------------CCCCEECCcCC-------chhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            4677777             89999999996       999999999999999999999999876

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.70  E-value=4.8e-09  Score=76.11  Aligned_cols=42  Identities=19%  Similarity=0.353  Sum_probs=33.9

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hC-CcceecC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CG-TREYRCD  199 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hg-ekpy~C~  199 (585)
                      .|+++|+++++|.|++|++.|.....|..|+++ ++ +++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CCccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            477888888888888888888888888888888 56 7888874

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.69  E-value=4.7e-09  Score=76.08  Aligned_cols=44  Identities=23%  Similarity=0.415  Sum_probs=41.0

Q ss_pred             CcccccccCcccccccCcccccccccchhcccccCccccccchhhhccccccccCCC
Q 007898           83 SPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEP  139 (585)
Q Consensus        83 ~~k~~~~~kpy~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  139 (585)
                      +.++|.++++|+|++|++.|.....|.+|+++|.             ++++|+|++|
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHT-------------GEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTS-------------SSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhC-------------CCCCCCCCCC
Confidence            4567889999999999999999999999999998             8999999987

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.68  E-value=6.4e-09  Score=76.31  Aligned_cols=40  Identities=20%  Similarity=0.338  Sum_probs=32.4

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCC
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSK  176 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK  176 (585)
                      .+++|.|++|+       +.|.....|.+|+++|+++++|+|++|+|
T Consensus         9 ~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            9 TRKQVACEICG-------KIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCSEEETTTT-------EEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCcCeeCCCCC-------cccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            67788888885       88888888888888888888888888876

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=1e-08  Score=74.22  Aligned_cols=44  Identities=20%  Similarity=0.237  Sum_probs=40.4

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|..|+++|+++++|+|++
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            2 SSGSSGT-------------GGKPYQCNECG-------KAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSS-------------SSCSSSCCSSC-------CCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             CcccccC-------------CCCCeECCCCC-------cccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5777787             89999999996       99999999999999999999999974

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=1e-08  Score=74.28  Aligned_cols=44  Identities=16%  Similarity=0.179  Sum_probs=40.4

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|.+|+++|+++++|+|++
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            2 SSGSSGS-------------GEKPFQCEECG-------KRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCC-------------CSSSBCCSSSC-------CCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CcccCCC-------------CCcCCCCCCCC-------cccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            5777887             89999999996       99999999999999999999999974

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.67  E-value=9.4e-09  Score=74.43  Aligned_cols=44  Identities=18%  Similarity=0.193  Sum_probs=40.4

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      +|+++|.             ++++|+|++|+       +.|.....|.+|+++|+++++|+|++
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            2 SSGSSGT-------------GEKPYKCNECG-------KVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCC-------------CCCSCBCSSSC-------CBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCCcCCC-------------CCcCeECCCCC-------cccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            4777777             89999999996       99999999999999999999999974

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.66  E-value=1e-08  Score=74.08  Aligned_cols=44  Identities=14%  Similarity=0.153  Sum_probs=40.5

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|..|+++|+++++|+|++
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            2 SSGSSGT-------------GEKPYECSDCG-------KSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCCS-------------SCCSSCCSSSC-------CCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             ccccCCC-------------CCCCcCCCCCC-------chhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5777887             89999999996       99999999999999999999999974

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=1.3e-08  Score=73.89  Aligned_cols=41  Identities=22%  Similarity=0.456  Sum_probs=33.5

Q ss_pred             hhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          159 HFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       159 H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      ++++|+++++|+|++|+|.|..+..|..|+++ +++++|.|+
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence            35678888888888888888888888888888 678888885

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1e-08  Score=74.23  Aligned_cols=44  Identities=18%  Similarity=0.203  Sum_probs=40.3

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      .|+++|.             ++++|.|++|+       +.|.....|.+|+++|+++++|+|++
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            2 SSGSSGT-------------GEKPYKCNECG-------KVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCS-------------CCCTTCCSSSC-------CCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCCcCCC-------------CCcCeECCCCC-------cccCChhHHHHHhHhcCCCCCCCCCC
Confidence            4777777             89999999996       99999999999999999999999974

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.1e-08  Score=74.04  Aligned_cols=44  Identities=14%  Similarity=0.181  Sum_probs=40.2

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      .|+++|.             ++++|.|++|+       +.|.....|.+|+++|+++++|+|++
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            2 SSGSSGT-------------GENPFICSECG-------KVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCC-------------SCCSCBCTTTC-------CBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCC-------------CCCCEECCccC-------cccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4777777             89999999996       99999999999999999999999974

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=4.6e-09  Score=76.19  Aligned_cols=44  Identities=23%  Similarity=0.284  Sum_probs=40.9

Q ss_pred             CcccccccCcccccccCcccccccccchhcccccCccccccchhhhccccccccCCC
Q 007898           83 SPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEP  139 (585)
Q Consensus        83 ~~k~~~~~kpy~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~C  139 (585)
                      ..++|.++++|.|++|++.|.....|..|+++|+             ++++|+|++|
T Consensus         3 ~~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C~~C   46 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHT-------------REKPSGPSSG   46 (46)
T ss_dssp             CSSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHH-------------HCCCCSCCCC
T ss_pred             CCCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcC-------------CCCCCCCCCC
Confidence            4567889999999999999999999999999998             8999999988

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.65  E-value=4.5e-09  Score=75.88  Aligned_cols=43  Identities=19%  Similarity=0.432  Sum_probs=40.2

Q ss_pred             ccccccCcccccccCcccccccccchhcccccCccccccchhhhccccccccCCCC
Q 007898           85 KTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPN  140 (585)
Q Consensus        85 k~~~~~kpy~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~Cg  140 (585)
                      ..|+++++|+|++|++.|..+..|.+|+++|+             ++++|.|++||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~-------------~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHD-------------GSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHS-------------CCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHcc-------------CCCCCCCcCCC
Confidence            46788999999999999999999999999998             89999999995

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1e-08  Score=74.14  Aligned_cols=44  Identities=18%  Similarity=0.236  Sum_probs=40.4

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|.+|+++|+++++|+|++
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            2 SSGSSGT-------------GEKPYICNECG-------KSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCC-------------SCCSEECSSSC-------CEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCC-------------CCcCEECCCCC-------hhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            5777777             89999999996       99999999999999999999999974

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.65  E-value=7.9e-09  Score=74.92  Aligned_cols=44  Identities=16%  Similarity=0.167  Sum_probs=40.4

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      .|+++|.             ++++|.|++|+       +.|.....|.+|+++|+++++|+|++
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            2 SSGSSGT-------------GEKPFECAECG-------KSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCC-------------CCCSEECSSSS-------CEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCC-------------CCCCEECCCCC-------cccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4777787             89999999996       99999999999999999999999974

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=1.2e-08  Score=73.94  Aligned_cols=44  Identities=20%  Similarity=0.238  Sum_probs=40.4

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|..|+++|+++++|+|++
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            2 SSGSSGT-------------GEKPYKCNECG-------KAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCC-------------CSCCCCCTTTT-------CCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             CcccccC-------------CCCCeECCcCC-------hhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5777887             89999999996       99999999999999999999999974

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.65  E-value=9.2e-09  Score=74.56  Aligned_cols=44  Identities=18%  Similarity=0.195  Sum_probs=40.4

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      .|+++|.             ++++|+|++|+       +.|.....|..|+++|+++++|+|++
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGT-------------GERHYECSECG-------KAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSC-------------CCCCEECSSSC-------CEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CcccCcC-------------CCCCeECCcCC-------cccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5777787             89999999996       99999999999999999999999974

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=8.2e-09  Score=74.74  Aligned_cols=44  Identities=18%  Similarity=0.190  Sum_probs=40.6

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|.+|+++|+++++|+|++
T Consensus         2 ~H~~~H~-------------~~~~~~C~~C~-------k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            2 SSGSSGT-------------GEKPYECKVCS-------KAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCS-------------SCCSEECSSSC-------CEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCC-------------CCcCeECCCCC-------cccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5777887             89999999996       99999999999999999999999975

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.64  E-value=8.7e-09  Score=75.60  Aligned_cols=41  Identities=17%  Similarity=0.365  Sum_probs=33.2

Q ss_pred             cccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-CCC
Q 007898          162 RKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGT  202 (585)
Q Consensus       162 ~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk  202 (585)
                      .|.++++|+|++|++.|.....|.+|+++ +++++|.|+ |+|
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            45677888888888888888888888888 678888888 875

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1.2e-08  Score=73.88  Aligned_cols=44  Identities=16%  Similarity=0.175  Sum_probs=40.3

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|.+|+++|+++++|+|++
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            2 SSGSSGM-------------GEKCYKCDVCG-------KEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCC-------------CCCCCBCSSSC-------CBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CCccccC-------------CCCCeECCCCC-------cccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4777777             89999999996       99999999999999999999999974

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=1e-08  Score=74.17  Aligned_cols=44  Identities=18%  Similarity=0.209  Sum_probs=40.3

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|..|+++|+++++|+|++
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            2 SSGSSGT-------------GEKPFECSECQ-------KAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSC-------------CCCSEECSSSC-------CEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCC-------------CCCCcCCCCCC-------cccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4777777             89999999996       99999999999999999999999974

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.64  E-value=9.1e-09  Score=74.42  Aligned_cols=44  Identities=20%  Similarity=0.237  Sum_probs=40.4

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|..|+++|+++++|+|++
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            2 SSGSSGT-------------GEKPYKCNECG-------KAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSC-------------CCCCEECTTSC-------CEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             CccCCCC-------------CCCCeeccccC-------ChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            5777777             89999999996       99999999999999999999999974

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.4e-08  Score=73.61  Aligned_cols=37  Identities=19%  Similarity=0.254  Sum_probs=35.3

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      ++++|+|++|+       +.|.....|.+|+++|+++++|+|++
T Consensus         9 ~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            9 GEKPYKCQVCG-------KAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             SCCSCBCSSSC-------CBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCcccCCCCCC-------cccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            89999999996       99999999999999999999999974

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.63  E-value=1.1e-08  Score=73.86  Aligned_cols=44  Identities=20%  Similarity=0.237  Sum_probs=40.4

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|.+|+++|+++++|+|++
T Consensus         2 ~H~~~H~-------------~~~~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            2 SSGSSGT-------------GEKPYRCGECG-------KAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCC-------------CCCCEECSSSC-------CEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CCccCCC-------------CCCCeECCCCC-------CccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            5777787             89999999996       99999999999999999999999974

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.62  E-value=1.1e-08  Score=74.23  Aligned_cols=44  Identities=18%  Similarity=0.179  Sum_probs=40.3

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      .|+++|.             ++++|+|++|+       +.|.....|.+|+++|+++++|+|++
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGT-------------GQRPYECIECG-------KAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCC-------------CSSSEECSSSC-------CEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CCccccC-------------CCcCcCCCCCC-------CccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            4777777             89999999996       99999999999999999999999974

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1.7e-08  Score=71.37  Aligned_cols=42  Identities=14%  Similarity=0.158  Sum_probs=38.7

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKC  171 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C  171 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|..|+++|+++++|+|
T Consensus         1 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            1 GSSGSSG-------------GEKPYRCDQCG-------KAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCC-------------SCCSBCCTTTT-------CCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CCccccC-------------CCCCeeCCCcc-------chhCCHHHHHHHHHHhCCCCCCCC
Confidence            3777777             89999999996       999999999999999999999998

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1.5e-08  Score=72.35  Aligned_cols=43  Identities=21%  Similarity=0.192  Sum_probs=39.6

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCD  172 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~  172 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|..|+++|+++++|+|+
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            2 SSGSSGT-------------GMKPYVCNECG-------KAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CSCCCSS-------------SSSSSCCTTTC-------CCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCCcCCC-------------CCcCeECCCCC-------CccCCHHHHHHHhhhcCCCCCCCCC
Confidence            5777777             89999999996       9999999999999999999999995

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=1.4e-08  Score=73.53  Aligned_cols=44  Identities=18%  Similarity=0.220  Sum_probs=40.2

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      .|+++|.             ++++|.|++|+       +.|.....|..|+++|+++++|+|++
T Consensus         2 ~h~~~H~-------------~~k~~~C~~C~-------k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            2 SSGSSGA-------------GKKLFKCNECK-------KTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCC-------------SSCCCBCTTTC-------CBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCC-------------CCCCEECCccC-------cccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            4677777             89999999996       99999999999999999999999974

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.5e-08  Score=73.40  Aligned_cols=44  Identities=18%  Similarity=0.190  Sum_probs=40.2

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      .|+++|.             ++++|+|++|+       +.|.....|.+|+++|+++++|+|+.
T Consensus         2 ~H~~~H~-------------~~~~~~C~~C~-------k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGT-------------GERHYECSECG-------KAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCS-------------SCCCEECSSSC-------CEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCcccC-------------CCCCCCCCCCC-------cccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            4777777             89999999996       99999999999999999999999974

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.61  E-value=9.6e-09  Score=77.40  Aligned_cols=52  Identities=13%  Similarity=0.159  Sum_probs=48.5

Q ss_pred             CcccccccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccc
Q 007898           99 NKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWK  170 (585)
Q Consensus        99 gk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~  170 (585)
                      +|.|.....|..|+++|.             ++++|.|++|+       +.|.....|..|+++|+++++|.
T Consensus         3 ~k~~~~~~~l~~h~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQ-------------SEQPATCPICY-------AVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHT-------------SSCCEECTTTC-------CEESSHHHHHHHHHHHTTTSCCC
T ss_pred             ccccCCCcchhhHHHhcC-------------CCCCccCCCCC-------cccCCHHHHHHHHHHhccCCCCC
Confidence            578999999999999998             89999999996       99999999999999999999984

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=1.1e-08  Score=73.98  Aligned_cols=44  Identities=20%  Similarity=0.192  Sum_probs=40.3

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      .|+++|.             ++++|.|++|+       +.|.....|.+|+++|+++++|+|++
T Consensus         2 ~H~~~H~-------------~~~~~~C~~C~-------k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            2 SSGSSGT-------------GEKPYNCEECG-------KAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSSSSSS-------------CCCSEECTTTC-------CEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCCcCcC-------------CCcCccCCCCC-------CCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            4777777             89999999996       99999999999999999999999975

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.60  E-value=1.6e-08  Score=71.61  Aligned_cols=36  Identities=19%  Similarity=0.262  Sum_probs=34.4

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccc
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCD  172 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~  172 (585)
                      ++++|+|++|+       +.|.....|.+|+++|+++++|+|.
T Consensus         7 ~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            7 GENPYECSECG-------KAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             SCCSEECSSSC-------CEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCccCCCcC-------hhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            89999999996       9999999999999999999999994

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=1.8e-08  Score=71.20  Aligned_cols=36  Identities=17%  Similarity=0.188  Sum_probs=34.4

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccc
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCD  172 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~  172 (585)
                      ++++|+|++|+       +.|.....|.+|+++|+++++|+|.
T Consensus         7 ~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            7 GEKPYSCAECK-------ETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             SCCSCBCTTTC-------CBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCCCeECCCCC-------CccCCHHHHHHHHHHhCCCCCCCCC
Confidence            89999999996       9999999999999999999999984

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=1.8e-08  Score=72.23  Aligned_cols=43  Identities=9%  Similarity=0.082  Sum_probs=39.7

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCD  172 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~  172 (585)
                      .|+++|.             ++++|.|++|+       +.|.....|..|+++|+++++|+|+
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            2 SSGSSGH-------------TRKRYECSKCQ-------ATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCCSCCC-------------CCSSEECTTTC-------CEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             CcccccC-------------CCCCeECCCCC-------CccCCHHHHHHHHHHcCCCCCcCCC
Confidence            5777887             89999999996       9999999999999999999999995

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=1.6e-08  Score=73.62  Aligned_cols=42  Identities=19%  Similarity=0.401  Sum_probs=29.5

Q ss_pred             hhccccCCcccccc--ccCCcccChhHHHHHHHH-hCCcceecC-C
Q 007898          159 HFCRKHGEKKWKCD--KCSKRYAVQSDWKAHSKT-CGTREYRCD-C  200 (585)
Q Consensus       159 H~r~Htgekpy~C~--~CgK~F~~~s~L~~H~r~-hgekpy~C~-C  200 (585)
                      |.++|+++++|+|.  +|+|.|..+..|.+|+++ +++++|+|+ |
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            45667777777776  677777777777777777 566777776 5

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=1.2e-08  Score=73.97  Aligned_cols=44  Identities=14%  Similarity=0.079  Sum_probs=40.4

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|.+|+++|+++++|+|+.
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            2 SSGSSGT-------------GEKPYSCNVCG-------KAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             CSCCCCS-------------SCCSEEETTTT-------EEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             CccccCC-------------CCCCeECcccC-------hhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5777887             89999999996       99999999999999999999999974

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=2.5e-08  Score=72.26  Aligned_cols=37  Identities=22%  Similarity=0.276  Sum_probs=35.1

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      ++++|+|++|+       +.|.....|.+|+++|+++++|+|+.
T Consensus         9 ~~k~~~C~~C~-------k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            9 GEKPYECDVCR-------KAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CSSSCBCTTTC-------CBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCcCCCCcC-------chhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            89999999996       99999999999999999999999964

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.59  E-value=3.1e-08  Score=70.79  Aligned_cols=39  Identities=15%  Similarity=0.400  Sum_probs=28.7

Q ss_pred             ccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          161 CRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       161 r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      ++|+++++|+|++|++.|..+..|.+|+++ +++++|.|+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            456777777777777777777777777777 577777774

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=2e-08  Score=72.78  Aligned_cols=44  Identities=18%  Similarity=0.226  Sum_probs=39.9

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      .|+++|.             ++++|+|++|+       +.|.....|.+|+++|+++++|+|..
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A            2 SSGSSGS-------------GKKPYECKECR-------KTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCCCSCC-------------CSCSCCCSSSC-------CCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCCCcC-------------CCCCcCCCCcC-------chhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            3677777             89999999996       99999999999999999999999963

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.59  E-value=3e-09  Score=89.50  Aligned_cols=57  Identities=11%  Similarity=0.302  Sum_probs=45.9

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCChHHHHHHHHHhh
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCD  218 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~~~h~  218 (585)
                      .|.++|+++++|+|++|++.|.....|..|+++ +++++|+|. |.+    +..|..|.++|.
T Consensus        15 ~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~----~~~~~~~~~~~~   73 (88)
T 1x6f_A           15 LGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQER----RKQLLSKQKYAD   73 (88)
T ss_dssp             CCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSC----CCCCCCCCCCCC
T ss_pred             ccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhh----HHHHHhhhcccc
Confidence            345679999999999999999999999999999 689999998 753    334555664443

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=1.5e-08  Score=73.41  Aligned_cols=44  Identities=18%  Similarity=0.277  Sum_probs=40.3

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      +|+++|.             ++++|+|++|+       +.|.....|.+|+++|+++++|+|+.
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yto_A            2 SSGSSGT-------------GEKPYKCSDCG-------KAFTRKSGLHIHQQSHTGERHSGPSS   45 (46)
T ss_dssp             CCCCCCC-------------SCCCEECSSSC-------CEESSHHHHHHHHHHHTCCCBTTTBC
T ss_pred             CcccccC-------------CCCCEECcccC-------CccCCHhHHHHHHHHcCCCCCCCCCC
Confidence            5777887             89999999996       99999999999999999999999963

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=1.4e-08  Score=73.16  Aligned_cols=41  Identities=17%  Similarity=0.453  Sum_probs=27.3

Q ss_pred             hhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC
Q 007898          159 HFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD  199 (585)
Q Consensus       159 H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~  199 (585)
                      +.++|+++++|+|++|+|.|..+..|..|+++ +++++|.|+
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~   44 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS   44 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence            34566667777777777777777777777666 566666663

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=1.7e-08  Score=72.09  Aligned_cols=43  Identities=19%  Similarity=0.220  Sum_probs=39.6

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCD  172 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~  172 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|..|+++|+++++|+|+
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            2 SSGSSGT-------------GEKPYECNECQ-------KAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CCSSCCS-------------CCCSEECTTTC-------CEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CCccCCC-------------CCCCeECCCCC-------cccCCHhHHHHHHHHhCCCCCCCCC
Confidence            5777777             89999999996       9999999999999999999999995

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=1.5e-08  Score=73.46  Aligned_cols=44  Identities=14%  Similarity=0.200  Sum_probs=40.2

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      .|+++|.             ++++|+|++|+       +.|.....|..|+++|+++++|+|+.
T Consensus         2 ~h~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A            2 SSGSSGS-------------GERPFKCNECG-------KGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCCSCSS-------------CCCSCCCSSSC-------CCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             CCCcCCC-------------CCCCeECCCCC-------cccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            4777777             89999999996       99999999999999999999999973

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=1.9e-08  Score=71.93  Aligned_cols=43  Identities=12%  Similarity=0.132  Sum_probs=39.5

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCD  172 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~  172 (585)
                      .|+++|.             ++++|+|++|+       +.|.....|..|+++|+++++|+|+
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGT-------------GENPYECCECG-------KVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSS-------------SCCSCEETTTT-------EECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccC-------------CCcCeeCCCCC-------CccCCHHHHHHHHHHcCCCCCCCCC
Confidence            4777777             89999999996       9999999999999999999999995

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=2.1e-08  Score=72.59  Aligned_cols=44  Identities=9%  Similarity=0.080  Sum_probs=40.1

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccC-Cccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHG-EKKWKCDK  173 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htg-ekpy~C~~  173 (585)
                      .|+++|.             ++++|.|++|+       +.|.....|..|+++|++ +++|+|++
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A            2 SSGSSGQ-------------KEKCFKCNKCE-------KTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             CCCCCCC-------------CSCCEECSSSC-------CEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             CCccccC-------------CCCCEECcCCC-------CcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            4777777             89999999996       999999999999999999 99999974

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=2.1e-08  Score=72.50  Aligned_cols=44  Identities=16%  Similarity=0.197  Sum_probs=40.3

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|.+|+++|+++++|+|+.
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            2 SSGSSGT-------------GEKPYECNQCG-------KAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCCSSC-------------CCCSSEETTTT-------EECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             CcccCCC-------------CCCCeECCCCC-------hhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5777887             89999999996       99999999999999999999999964

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=2.8e-08  Score=70.41  Aligned_cols=35  Identities=20%  Similarity=0.253  Sum_probs=33.8

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccc
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKC  171 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C  171 (585)
                      ++++|+|++|+       +.|.....|..|+++|+++++|+|
T Consensus         8 ~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            8 GEKPYPCEICG-------TRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             SSCCBCCSSSC-------CCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCCCEECCCCC-------CccCCHHHHHHHHHhcCCCCCCCC
Confidence            89999999996       999999999999999999999998

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=2.1e-08  Score=71.83  Aligned_cols=43  Identities=7%  Similarity=0.060  Sum_probs=39.6

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCD  172 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~  172 (585)
                      +|+++|.             ++++|+|++|+       +.|.....|..|+++|+++++|+|.
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            2 SSGSSGA-------------GENPFKCSKCD-------RVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CCSCCCS-------------CCCSEECSSSS-------CEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CCccccC-------------CCCCeECCCCC-------chhCCHHHHHHHhHhcCCCCCCCCC
Confidence            5777777             89999999996       9999999999999999999999984

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=2.5e-08  Score=70.28  Aligned_cols=38  Identities=16%  Similarity=0.492  Sum_probs=25.8

Q ss_pred             ccccCCccccccccCCcccChhHHHHHHHH-hCCcceec
Q 007898          161 CRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRC  198 (585)
Q Consensus       161 r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C  198 (585)
                      ++|+++++|+|++|++.|.....|..|+++ ++++||.|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            356666777777777777777777777666 56666666

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.53  E-value=1.8e-08  Score=72.85  Aligned_cols=43  Identities=12%  Similarity=0.057  Sum_probs=39.9

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCD  172 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~  172 (585)
                      +|+++|.             ++++|.|++|+       +.|.....|.+|+++|+++++|+|.
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            2 SSGSSGT-------------GEKPFQCKECG-------MNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCCSC-------------CCCSEECSSSC-------CEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             ccccccC-------------CCCCeeCcccC-------hhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            5778887             89999999996       9999999999999999999999995

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=2.6e-08  Score=70.46  Aligned_cols=35  Identities=14%  Similarity=0.219  Sum_probs=33.8

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccc
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKC  171 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C  171 (585)
                      ++++|.|++|+       +.|.....|..|+++|+++++|+|
T Consensus         8 ~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            8 GEKPYKCETCG-------ARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             SSCSEECTTTC-------CEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCCCEeCCCcC-------hhhCCHHHHHHHHHHcCCCCCCCC
Confidence            89999999996       999999999999999999999998

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.51  E-value=2.4e-08  Score=71.55  Aligned_cols=43  Identities=14%  Similarity=0.146  Sum_probs=39.5

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCD  172 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~  172 (585)
                      .|+++|.             ++++|.|++|+       +.|.....|..|+++|+++++|+|.
T Consensus         2 ~H~~~H~-------------~~~~~~C~~C~-------k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGT-------------DSKSYNCNECG-------KAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCC-------------CCCCEEETTTT-------EEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCcCCC-------------CCCCeECcccC-------cccCCHHHHHHHHHHhCCCCCCCCC
Confidence            5777787             89999999996       9999999999999999999999983

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=3.9e-08  Score=70.45  Aligned_cols=36  Identities=17%  Similarity=0.162  Sum_probs=34.5

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccc
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCD  172 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~  172 (585)
                      ++++|.|++|+       +.|.....|..|+++|+++++|+|+
T Consensus         9 ~~~~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            9 AKTTSECQECG-------KIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             SSCCCCCTTTC-------CCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCcCeECCCCC-------cccCCHHHHHHHHHHHCCCCCCCCC
Confidence            89999999996       9999999999999999999999995

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.51  E-value=3.3e-08  Score=69.82  Aligned_cols=35  Identities=9%  Similarity=0.104  Sum_probs=33.8

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccc
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKC  171 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C  171 (585)
                      ++++|.|++|+       +.|.....|..|+++|+++++|+|
T Consensus         8 ~~~~~~C~~C~-------k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            8 GETPYLCGQCG-------KSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             SSCCEECSSSC-------CEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCCCeECCCCC-------cccCCHHHHHHHhhhcCCCCCCCC
Confidence            89999999996       999999999999999999999998

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.49  E-value=4.7e-08  Score=71.13  Aligned_cols=38  Identities=13%  Similarity=0.148  Sum_probs=36.4

Q ss_pred             cccccccC--CCCcccCCCCCccCChhhhhhhhccccCCcccccccc
Q 007898          130 RKKVYVCP--EPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKC  174 (585)
Q Consensus       130 ~~k~y~C~--~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~C  174 (585)
                      ++++|+|.  +|+       +.|.....|..|+++|+++++|+|.+|
T Consensus         9 ~~k~~~C~~~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            9 GEKPFACTWPGCG-------WRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCCEECCSSSCC-------CEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCeECCCCCCC-------CccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            89999998  895       999999999999999999999999988

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.49  E-value=1.8e-08  Score=84.65  Aligned_cols=60  Identities=15%  Similarity=0.216  Sum_probs=42.9

Q ss_pred             cCcccccccCcccccccCcccccccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhc
Q 007898           82 LSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFC  161 (585)
Q Consensus        82 ~~~k~~~~~kpy~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r  161 (585)
                      .+.++|.++++|+|++|++.|.....|..|+++|+             ++++|+|..|.           ....|..|.+
T Consensus        15 ~~~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht-------------~ekp~~C~~~~-----------~~~~~~~~~~   70 (88)
T 1x6f_A           15 LGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHN-------------EEFQKRAKRQE-----------RRKQLLSKQK   70 (88)
T ss_dssp             CCCCSCCCCSCEECSSSCCEESSHHHHHHHHHHHH-------------HHHHHHCCCCS-----------CCCCCCCCCC
T ss_pred             ccccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhC-------------CCCCcccchhh-----------hHHHHHhhhc
Confidence            34556777788888888888888888888887777             77788876653           3455666777


Q ss_pred             cccC
Q 007898          162 RKHG  165 (585)
Q Consensus       162 ~Htg  165 (585)
                      .|.+
T Consensus        71 ~~~~   74 (88)
T 1x6f_A           71 YADG   74 (88)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            7765

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.49  E-value=2.1e-08  Score=81.58  Aligned_cols=64  Identities=20%  Similarity=0.389  Sum_probs=57.3

Q ss_pred             ccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHH
Q 007898          105 DQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDW  184 (585)
Q Consensus       105 ~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L  184 (585)
                      +..|..|+++|.             ++++|.|++|+       +.| ....|..|+ .|.++++|.|+.|++.|. ...|
T Consensus         2 ~~~L~~H~~~~c-------------~~r~~~C~~C~-------~~~-~~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l   58 (75)
T 2d9k_A            2 SSGSSGHEETEC-------------PLRLAVCQHCD-------LEL-SILKLKEHE-DYCGARTELCGNCGRNVL-VKDL   58 (75)
T ss_dssp             CCCCSCCCCCCC-------------CCCCEECSSSC-------CEE-CHHHHHHHH-HHHHHCEEECSSSCCEEE-TTGG
T ss_pred             chHHHhhCcccC-------------CCcccCCcccC-------hHh-hHHHHHHHH-hHcCCCceEcccCCCcCc-HHHH
Confidence            457888988888             99999999995       888 489999999 999999999999999987 5999


Q ss_pred             HHHHHHh
Q 007898          185 KAHSKTC  191 (585)
Q Consensus       185 ~~H~r~h  191 (585)
                      ..|++++
T Consensus        59 ~~H~~~c   65 (75)
T 2d9k_A           59 KTHPEVC   65 (75)
T ss_dssp             GTHHHHB
T ss_pred             HHHHHHc
Confidence            9999983

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.47  E-value=5.6e-08  Score=69.71  Aligned_cols=43  Identities=16%  Similarity=0.043  Sum_probs=39.3

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCcccccc
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCD  172 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~  172 (585)
                      .|+++|.             ++++|+|++|+       +.|.....|..|+++|+++++|.|.
T Consensus         2 ~H~~~H~-------------~~k~~~C~~C~-------k~F~~~~~L~~H~~~H~~~k~~~~g   44 (44)
T 2epv_A            2 SSGSSGS-------------GEKPYECNECG-------KAFIWKSLLIVHERTHAGVSGPSSG   44 (44)
T ss_dssp             CCCCCCC-------------CCCSEECSSSC-------CEESSHHHHHHHHGGGSSCSCCCCC
T ss_pred             CCCcccC-------------CCcCeECCCCC-------cccCchHHHHHHHhHhcCCCCCCCC
Confidence            4777887             89999999996       9999999999999999999999873

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.47  E-value=5.8e-08  Score=70.32  Aligned_cols=37  Identities=14%  Similarity=0.107  Sum_probs=35.2

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      ++++|+|++|+       +.|.....|..|+++|+++++|+|++
T Consensus         9 ~~k~~~C~~C~-------k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            9 GERGHRCSDCG-------KFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCCSSSC-------CCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCcCCCCCC-------CeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            89999999996       99999999999999999999999974

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.45  E-value=5.5e-08  Score=70.01  Aligned_cols=37  Identities=16%  Similarity=0.225  Sum_probs=35.2

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      ++++|+|++|+       +.|.....|..|+++|+++++|+|++
T Consensus         9 ~~k~~~C~~C~-------k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            9 GQKPFECTHCG-------KSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             SCCSEEETTTT-------EEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCcCccCCCCC-------CccCChHHHHHHHHHhCCCCCCCCCC
Confidence            89999999996       99999999999999999999999974

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=6e-08  Score=68.29  Aligned_cols=39  Identities=23%  Similarity=0.397  Sum_probs=36.4

Q ss_pred             ccccccCcccccccCcccccccccchhcccccCccccccchhhhcccccccc
Q 007898           85 KTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVC  136 (585)
Q Consensus        85 k~~~~~kpy~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C  136 (585)
                      ++|.++++|+|++|++.|.....|..|+++|+             ++++|+|
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~C   41 (41)
T 2ept_A            3 SGSSGQRVYECQECGKSFRQKGSLTLHERIHT-------------GSGPSSG   41 (41)
T ss_dssp             SSCCCCCCEECSSSCCEESSHHHHHHHGGGCC-------------CCSCSCC
T ss_pred             CccCCCCCeECCCCCCCcCCHHHHHHHHHHhC-------------CCCCcCC
Confidence            46788999999999999999999999999998             8899988

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.40  E-value=1.2e-07  Score=67.76  Aligned_cols=37  Identities=16%  Similarity=0.341  Sum_probs=35.2

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccc
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDK  173 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~  173 (585)
                      ++++|.|++|+       +.|.....|..|+++|+++++|+|++
T Consensus         7 ~~k~~~C~~C~-------k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A            7 GNGAFFCNECD-------CRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             SSCCBCCSSSC-------CCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             CCCCEECCCCC-------CeeCChHHHHHHHHhhCCCCCccCCC
Confidence            89999999996       99999999999999999999999974

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.31  E-value=3.4e-07  Score=62.62  Aligned_cols=33  Identities=18%  Similarity=0.426  Sum_probs=28.7

Q ss_pred             hhccccCCccccccccCCcccChhHHHHHHHHh
Q 007898          159 HFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTC  191 (585)
Q Consensus       159 H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~h  191 (585)
                      |+++|+++++|+|++|++.|.....|..|+++|
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H   34 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHh
Confidence            778888899999999999999999999998873

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.31  E-value=2.3e-07  Score=64.57  Aligned_cols=34  Identities=12%  Similarity=0.318  Sum_probs=16.7

Q ss_pred             cCCccccccccCCcccChhHHHHHHHH-hCCccee
Q 007898          164 HGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYR  197 (585)
Q Consensus       164 tgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~  197 (585)
                      +++++|+|++|++.|.....|..|+++ +++++|.
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   36 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARL   36 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTT
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHHHcCCCccce
Confidence            344455555555555555555555544 3444443

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.27  E-value=3.2e-07  Score=62.72  Aligned_cols=35  Identities=20%  Similarity=0.359  Sum_probs=26.2

Q ss_pred             ccccCCccccccccCCcccChhHHHHHHHH-hCCcc
Q 007898          161 CRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTRE  195 (585)
Q Consensus       161 r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekp  195 (585)
                      ++|+++++|+|++|++.|..+..|..|+++ ++++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            567777888888888888888888888777 55553

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.17  E-value=3.7e-07  Score=63.43  Aligned_cols=38  Identities=21%  Similarity=0.450  Sum_probs=33.7

Q ss_pred             ccccCcccccccCcccccccccchhcccccCccccccchhhhccccccccC
Q 007898           87 LMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCP  137 (585)
Q Consensus        87 ~~~~kpy~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~  137 (585)
                      |.++++|+|++|++.|.....|..|+++|+             ++++|.|.
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~-------------~~k~~~~~   38 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHR-------------RDRARLRL   38 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTC-------------CSCTTTTC
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcC-------------CCccceec
Confidence            457899999999999999999999999998             88888763

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.17  E-value=9.5e-07  Score=59.34  Aligned_cols=32  Identities=19%  Similarity=0.522  Sum_probs=20.6

Q ss_pred             ccCCccccccccCCcccChhHHHHHHHH-hCCc
Q 007898          163 KHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTR  194 (585)
Q Consensus       163 Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgek  194 (585)
                      |+++++|+|++|++.|.....|..|+++ ++++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~k   34 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAA   34 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCC
Confidence            5566666666666666666666666666 4444

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.16  E-value=1.1e-06  Score=70.23  Aligned_cols=36  Identities=11%  Similarity=0.209  Sum_probs=24.7

Q ss_pred             ccCCccccccc--cCCcccChhHHHHHH-HH-hCCcceec
Q 007898          163 KHGEKKWKCDK--CSKRYAVQSDWKAHS-KT-CGTREYRC  198 (585)
Q Consensus       163 Htgekpy~C~~--CgK~F~~~s~L~~H~-r~-hgekpy~C  198 (585)
                      ++++|||+|.+  |+|.|...++|.+|+ ++ +++|||.|
T Consensus        22 ~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~   61 (73)
T 1x3c_A           22 YSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFS   61 (73)
T ss_dssp             SCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCC
T ss_pred             ccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccc
Confidence            45677777754  777777777777776 34 46777776

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.13  E-value=1.2e-06  Score=58.99  Aligned_cols=32  Identities=19%  Similarity=0.472  Sum_probs=19.4

Q ss_pred             ccCCccccccccCCcccChhHHHHHHHH-hCCc
Q 007898          163 KHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTR  194 (585)
Q Consensus       163 Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgek  194 (585)
                      |+++++|+|++|++.|.....|.+|+++ ++++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~   34 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCC
Confidence            5556666666666666666666666665 3443

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.04  E-value=2.8e-06  Score=56.85  Aligned_cols=29  Identities=24%  Similarity=0.402  Sum_probs=14.7

Q ss_pred             cccccccCCcccChhHHHHHHHH-hCCcce
Q 007898          168 KWKCDKCSKRYAVQSDWKAHSKT-CGTREY  196 (585)
Q Consensus       168 py~C~~CgK~F~~~s~L~~H~r~-hgekpy  196 (585)
                      +|.|++|++.|.....|..|+++ +++++|
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            45555555555555555555555 344444

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.02  E-value=2.1e-06  Score=58.92  Aligned_cols=31  Identities=13%  Similarity=0.261  Sum_probs=23.4

Q ss_pred             ccccCCccccccccCCcccChhHHHHH-HHHh
Q 007898          161 CRKHGEKKWKCDKCSKRYAVQSDWKAH-SKTC  191 (585)
Q Consensus       161 r~Htgekpy~C~~CgK~F~~~s~L~~H-~r~h  191 (585)
                      ++|+++++|+|++|++.|..+..|..| +++|
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H   33 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKH   33 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHT
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHc
Confidence            567777888888888888888888887 6654

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.98  E-value=3.2e-06  Score=57.67  Aligned_cols=33  Identities=21%  Similarity=0.342  Sum_probs=23.2

Q ss_pred             ccccCCccccccccCCcccCh-hHHHHHHHH-hCC
Q 007898          161 CRKHGEKKWKCDKCSKRYAVQ-SDWKAHSKT-CGT  193 (585)
Q Consensus       161 r~Htgekpy~C~~CgK~F~~~-s~L~~H~r~-hge  193 (585)
                      ++|+++++|+|++|++.|... ..|..|+++ +++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            356677777777777777777 777777776 444

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.95  E-value=2.2e-06  Score=59.58  Aligned_cols=25  Identities=20%  Similarity=0.446  Sum_probs=15.3

Q ss_pred             cCCccccccccCCcccChhHHHHHH
Q 007898          164 HGEKKWKCDKCSKRYAVQSDWKAHS  188 (585)
Q Consensus       164 tgekpy~C~~CgK~F~~~s~L~~H~  188 (585)
                      .+||||+|++|+|.|..+++|.+|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            4566666666666666666666665

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=97.95  E-value=4.1e-06  Score=57.06  Aligned_cols=30  Identities=20%  Similarity=0.281  Sum_probs=28.2

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCC
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGE  166 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htge  166 (585)
                      ++++|+|++|+       +.|.....|..|+++|+++
T Consensus         8 ~~k~~~C~~C~-------k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            8 GIKPFQCPDCD-------RSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSSSBCCTTTC-------CCBSSHHHHHHHHGGGTCC
T ss_pred             CCCCccCCCCC-------cccCcHHHHHHHHHHhccC
Confidence            89999999996       9999999999999999875

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=97.94  E-value=2e-06  Score=57.85  Aligned_cols=31  Identities=29%  Similarity=0.512  Sum_probs=28.9

Q ss_pred             cccccCcccccccCcccccccccchhccccc
Q 007898           86 TLMATNRFVCEICNKGFQRDQNLQLHRRGHN  116 (585)
Q Consensus        86 ~~~~~kpy~C~~Cgk~F~~~~~L~~H~r~H~  116 (585)
                      +|.++++|+|.+|++.|.....|..|+++|+
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   31 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcC
Confidence            3678999999999999999999999999997

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.94  E-value=4.3e-06  Score=57.37  Aligned_cols=34  Identities=18%  Similarity=0.450  Sum_probs=22.7

Q ss_pred             ccCCcccccc--ccCCcccChhHHHHHHHH-hCCcce
Q 007898          163 KHGEKKWKCD--KCSKRYAVQSDWKAHSKT-CGTREY  196 (585)
Q Consensus       163 Htgekpy~C~--~CgK~F~~~s~L~~H~r~-hgekpy  196 (585)
                      |+++++|+|.  .|++.|.....|.+|+++ +++++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            4566677777  377777777777777766 566665

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.92  E-value=1.8e-06  Score=57.87  Aligned_cols=31  Identities=26%  Similarity=0.485  Sum_probs=28.8

Q ss_pred             cccccCcccccccCcccccccccchhccccc
Q 007898           86 TLMATNRFVCEICNKGFQRDQNLQLHRRGHN  116 (585)
Q Consensus        86 ~~~~~kpy~C~~Cgk~F~~~~~L~~H~r~H~  116 (585)
                      +|.++++|.|.+|++.|.....|..|+++|+
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~   31 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVH   31 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTS
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHc
Confidence            3677899999999999999999999999997

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.92  E-value=5.3e-06  Score=56.02  Aligned_cols=29  Identities=24%  Similarity=0.536  Sum_probs=19.7

Q ss_pred             cccCCccccccccCCcccChhHHHHHHHH
Q 007898          162 RKHGEKKWKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       162 ~Htgekpy~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      +|.++++|+|.+|++.|.....|..|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRK   31 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHH
Confidence            45666677777777777777777777666

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.92  E-value=5e-06  Score=56.29  Aligned_cols=29  Identities=28%  Similarity=0.448  Sum_probs=19.6

Q ss_pred             cccCCccccccccCCcccChhHHHHHHHH
Q 007898          162 RKHGEKKWKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       162 ~Htgekpy~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      .|.++++|+|.+|++.|.....|..|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNR   31 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHH
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHH
Confidence            45666667777777777666666666666

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.91  E-value=4.4e-06  Score=56.61  Aligned_cols=29  Identities=14%  Similarity=0.381  Sum_probs=18.3

Q ss_pred             cccCCccccccccCCcccChhHHHHHHHH
Q 007898          162 RKHGEKKWKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       162 ~Htgekpy~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      .|+++++|+|.+|++.|.....|..|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLV   31 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTT
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHH
Confidence            35556666666666666666666666665

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.91  E-value=3.2e-06  Score=57.60  Aligned_cols=32  Identities=25%  Similarity=0.428  Sum_probs=30.2

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCcc
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKK  168 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekp  168 (585)
                      ++++|.|++|+       +.|.....|..|+++|++++|
T Consensus         6 ~~k~~~C~~C~-------k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            6 SGRSYSCPVCE-------KSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCEETTTT-------EECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCcCCCCCC-------CccCCHHHHHHHHHHHcCCCC
Confidence            89999999996       999999999999999999875

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.90  E-value=7.5e-06  Score=55.24  Aligned_cols=29  Identities=24%  Similarity=0.495  Sum_probs=19.8

Q ss_pred             cccCCccccccccCCcccChhHHHHHHHH
Q 007898          162 RKHGEKKWKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       162 ~Htgekpy~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      .|.++++|+|++|++.|.....|..|+++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLL   31 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHH
Confidence            35566677777777777777777777666

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=97.90  E-value=4.1e-06  Score=56.05  Aligned_cols=33  Identities=15%  Similarity=0.178  Sum_probs=30.5

Q ss_pred             cccccCCCCcccCCCCCccCChhhhhhhhccccCCccccc
Q 007898          132 KVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKC  171 (585)
Q Consensus       132 k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C  171 (585)
                      ++|.|++|+       +.|.....|..|+++|+++++|.+
T Consensus         1 kp~~C~~C~-------k~F~~~~~L~~H~~~H~~~~~~~r   33 (33)
T 1rim_A            1 YKFACPECP-------KRFMRSDHLSKHITLHELLGEERR   33 (33)
T ss_dssp             CCCCCSSSC-------CCCSSHHHHHHHHHHHTTTCCCCC
T ss_pred             CcccCCCCC-------chhCCHHHHHHHHHHhCCCCCCCC
Confidence            589999996       999999999999999999999864

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.88  E-value=5.4e-06  Score=66.17  Aligned_cols=37  Identities=11%  Similarity=0.085  Sum_probs=33.9

Q ss_pred             cccccccCC--CCcccCCCCCccCChhhhhhhh-ccccCCccccccc
Q 007898          130 RKKVYVCPE--PNCVHHDPSRALGDLTGIKKHF-CRKHGEKKWKCDK  173 (585)
Q Consensus       130 ~~k~y~C~~--CgC~~~~~~k~F~~~~~L~~H~-r~Htgekpy~C~~  173 (585)
                      ++|||+|.+  |+       |+|....+|.+|+ ++|+++|||.|..
T Consensus        24 GEKPYkC~~~~Cg-------KaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           24 PYRPYRCVHQGCF-------AAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SSCSCBCCSTTCC-------CBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             CCCCeECCCCCcC-------hhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            899999976  85       9999999999998 6899999999965

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.86  E-value=1.3e-05  Score=63.51  Aligned_cols=27  Identities=15%  Similarity=0.356  Sum_probs=12.3

Q ss_pred             cCCccccccccCCcccChhHHHHHHHH
Q 007898          164 HGEKKWKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       164 tgekpy~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      .++|||+|.+|+|.|..+..|.+|+++
T Consensus         9 ~~ekpy~C~~CgK~F~~~s~L~~H~r~   35 (66)
T 2epp_A            9 REAGILPCGLCGKVFTDANRLRQHEAQ   35 (66)
T ss_dssp             CCCCCCCCTTTCCCCSCHHHHHHHHHH
T ss_pred             CCccCcCCCCCCCccCCHHHHHhhhhh
Confidence            334444444444444444444444444

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.85  E-value=2.7e-06  Score=56.46  Aligned_cols=26  Identities=31%  Similarity=0.556  Sum_probs=25.0

Q ss_pred             CcccccccCcccccccccchhccccc
Q 007898           91 NRFVCEICNKGFQRDQNLQLHRRGHN  116 (585)
Q Consensus        91 kpy~C~~Cgk~F~~~~~L~~H~r~H~  116 (585)
                      ++|+|++|++.|.....|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~   26 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAF   26 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHc
Confidence            58999999999999999999999998

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.84  E-value=5.9e-06  Score=60.06  Aligned_cols=40  Identities=20%  Similarity=0.502  Sum_probs=32.1

Q ss_pred             hhhhhhccccCCcccccc--ccCCcccChhHHHHHHHH-hCCc
Q 007898          155 GIKKHFCRKHGEKKWKCD--KCSKRYAVQSDWKAHSKT-CGTR  194 (585)
Q Consensus       155 ~L~~H~r~Htgekpy~C~--~CgK~F~~~s~L~~H~r~-hgek  194 (585)
                      .+..|...|+++++|+|+  .|+|.|..+..|.+|+++ +++|
T Consensus         5 ~~~~~~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A            5 GSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SSGGGSCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HHHHHHhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            345566779999999996  699999999999999988 4543

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.84  E-value=6.1e-06  Score=60.39  Aligned_cols=27  Identities=30%  Similarity=0.637  Sum_probs=15.4

Q ss_pred             ccCCccccccccCCcccChhHHHHHHH
Q 007898          163 KHGEKKWKCDKCSKRYAVQSDWKAHSK  189 (585)
Q Consensus       163 Htgekpy~C~~CgK~F~~~s~L~~H~r  189 (585)
                      |+++|+|+|.+|+|.|.....|.+|++
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhh
Confidence            455555555555555555555555555

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.83  E-value=9.1e-06  Score=57.08  Aligned_cols=28  Identities=21%  Similarity=0.277  Sum_probs=16.6

Q ss_pred             ccCCccccccc--cCCcccChhHHHHHHHH
Q 007898          163 KHGEKKWKCDK--CSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       163 Htgekpy~C~~--CgK~F~~~s~L~~H~r~  190 (585)
                      ++++|||+|++  |+|.|..++.|.+|+++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~   33 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKV   33 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHh
Confidence            44556666654  66666666666666655

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.79  E-value=1.2e-05  Score=54.41  Aligned_cols=28  Identities=21%  Similarity=0.532  Sum_probs=16.9

Q ss_pred             ccCCccccccccCCcccChhHHHHHHHH
Q 007898          163 KHGEKKWKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       163 Htgekpy~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      |.++++|+|++|++.|.....|..|+++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~   31 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRI   31 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHH
Confidence            4455666666666666666666666655

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.78  E-value=5.4e-06  Score=56.14  Aligned_cols=31  Identities=19%  Similarity=0.393  Sum_probs=29.0

Q ss_pred             cccccCcccccccCcccccccccchhccccc
Q 007898           86 TLMATNRFVCEICNKGFQRDQNLQLHRRGHN  116 (585)
Q Consensus        86 ~~~~~kpy~C~~Cgk~F~~~~~L~~H~r~H~  116 (585)
                      .|.++++|+|.+|++.|.....|..|+++|+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHG   33 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTS
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhc
Confidence            4678899999999999999999999999997

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.74  E-value=5.6e-06  Score=54.87  Aligned_cols=31  Identities=13%  Similarity=0.189  Sum_probs=26.5

Q ss_pred             cccccCCCCcccCCCCCccCChhhhhhhhccccCCccc
Q 007898          132 KVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKW  169 (585)
Q Consensus       132 k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy  169 (585)
                      ++|+|++|+       +.|.....|..|+++|+++++|
T Consensus         1 kp~~C~~C~-------k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACP-------KRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSC-------TTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCC-------cccCCHHHHHHHHHHHccCCCC
Confidence            478898885       8888889999999999888876

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.73  E-value=6.1e-06  Score=55.87  Aligned_cols=31  Identities=23%  Similarity=0.480  Sum_probs=29.1

Q ss_pred             cccccCcccccccCcccccccccchhccccc
Q 007898           86 TLMATNRFVCEICNKGFQRDQNLQLHRRGHN  116 (585)
Q Consensus        86 ~~~~~kpy~C~~Cgk~F~~~~~L~~H~r~H~  116 (585)
                      +|.++++|+|.+|++.|.....|..|+++|+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHS   33 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSS
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhc
Confidence            5778999999999999999999999999997

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.73  E-value=5.2e-06  Score=56.60  Aligned_cols=32  Identities=22%  Similarity=0.411  Sum_probs=29.5

Q ss_pred             ccccccCcccccccCcccccc-cccchhccccc
Q 007898           85 KTLMATNRFVCEICNKGFQRD-QNLQLHRRGHN  116 (585)
Q Consensus        85 k~~~~~kpy~C~~Cgk~F~~~-~~L~~H~r~H~  116 (585)
                      ++|.++++|+|++|++.|... ..|..|+++|+
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~   34 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHE   34 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHH
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcC
Confidence            467889999999999999999 99999999987

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.72  E-value=5.5e-06  Score=55.94  Aligned_cols=31  Identities=23%  Similarity=0.410  Sum_probs=29.0

Q ss_pred             cccccCcccccccCcccccccccchhccccc
Q 007898           86 TLMATNRFVCEICNKGFQRDQNLQLHRRGHN  116 (585)
Q Consensus        86 ~~~~~kpy~C~~Cgk~F~~~~~L~~H~r~H~  116 (585)
                      +|.++++|+|.+|++.|.....|..|+++|+
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~   33 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHT   33 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHcc
Confidence            5778999999999999999999999999997

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.71  E-value=1.3e-05  Score=55.73  Aligned_cols=24  Identities=25%  Similarity=0.584  Sum_probs=22.7

Q ss_pred             hCCcceecC-CCCccCChHHHHHHH
Q 007898          191 CGTREYRCD-CGTLFSRRDSFITHR  214 (585)
Q Consensus       191 hgekpy~C~-Cgk~F~~~s~L~~H~  214 (585)
                      .+||||.|+ |+|.|.+++.|++|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            478999999 999999999999998

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.65  E-value=8.1e-05  Score=58.86  Aligned_cols=30  Identities=20%  Similarity=0.419  Sum_probs=26.9

Q ss_pred             hCCcceecC-CCCccCChHHHHHHHHHhhhc
Q 007898          191 CGTREYRCD-CGTLFSRRDSFITHRAFCDAL  220 (585)
Q Consensus       191 hgekpy~C~-Cgk~F~~~s~L~~H~~~h~~~  220 (585)
                      .++|||+|. |+|.|.++..|++|+++|.+.
T Consensus         9 ~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~   39 (66)
T 2epp_A            9 REAGILPCGLCGKVFTDANRLRQHEAQHGVT   39 (66)
T ss_dssp             CCCCCCCCTTTCCCCSCHHHHHHHHHHHTTT
T ss_pred             CCccCcCCCCCCCccCCHHHHHhhhhhhCCC
Confidence            368999999 999999999999999887754

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.64  E-value=2.7e-05  Score=53.20  Aligned_cols=31  Identities=29%  Similarity=0.490  Sum_probs=20.9

Q ss_pred             ccCCccccccc--cCCcccChhHHHHHHHH-hCC
Q 007898          163 KHGEKKWKCDK--CSKRYAVQSDWKAHSKT-CGT  193 (585)
Q Consensus       163 Htgekpy~C~~--CgK~F~~~s~L~~H~r~-hge  193 (585)
                      |+++++|.|.+  |+|.|.....|.+|+++ +++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            56677777764  77777777777777766 344

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=97.63  E-value=9.8e-06  Score=59.27  Aligned_cols=31  Identities=23%  Similarity=0.516  Sum_probs=28.7

Q ss_pred             cccccCcccccccCcccccccccchhcc-ccc
Q 007898           86 TLMATNRFVCEICNKGFQRDQNLQLHRR-GHN  116 (585)
Q Consensus        86 ~~~~~kpy~C~~Cgk~F~~~~~L~~H~r-~H~  116 (585)
                      +|+++++|+|.+|+|.|.....|..|++ +|.
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~   32 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHL   32 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSC
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcC
Confidence            4778999999999999999999999999 997

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.60  E-value=3e-05  Score=48.74  Aligned_cols=24  Identities=13%  Similarity=0.317  Sum_probs=13.4

Q ss_pred             cceecC-CCCccCChHHHHHHHHHh
Q 007898          194 REYRCD-CGTLFSRRDSFITHRAFC  217 (585)
Q Consensus       194 kpy~C~-Cgk~F~~~s~L~~H~~~h  217 (585)
                      ++|.|+ |++.|..+..|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            455555 555555555555555443

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.56  E-value=1.2e-05  Score=50.79  Aligned_cols=27  Identities=30%  Similarity=0.699  Sum_probs=24.9

Q ss_pred             cCcccccccCcccccccccchhccccc
Q 007898           90 TNRFVCEICNKGFQRDQNLQLHRRGHN  116 (585)
Q Consensus        90 ~kpy~C~~Cgk~F~~~~~L~~H~r~H~  116 (585)
                      +++|+|++|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            478999999999999999999999884

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.55  E-value=2.1e-05  Score=53.79  Aligned_cols=34  Identities=12%  Similarity=0.219  Sum_probs=31.1

Q ss_pred             cccccccC--CCCcccCCCCCccCChhhhhhhhccccCCcccc
Q 007898          130 RKKVYVCP--EPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWK  170 (585)
Q Consensus       130 ~~k~y~C~--~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~  170 (585)
                      ++++|.|.  .|+       +.|.....|.+|+++|+++++|.
T Consensus         3 ~~k~~~C~~~~C~-------k~f~~~~~L~~H~~~H~~~k~~~   38 (38)
T 1bhi_A            3 DDKPFLCTAPGCG-------QRFTNEDHLAVHKHKHEMTLKFG   38 (38)
T ss_dssp             TCCCEECCCTTTC-------CEESSHHHHHHHHHHHHTTTTTC
T ss_pred             CCcceECCCCCCC-------cccCCHHHHHHHHHHhCCCCCCC
Confidence            78999999  595       99999999999999999999873

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.53  E-value=2.4e-05  Score=49.44  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=13.6

Q ss_pred             cceecC-CCCccCChHHHHHHHHH
Q 007898          194 REYRCD-CGTLFSRRDSFITHRAF  216 (585)
Q Consensus       194 kpy~C~-Cgk~F~~~s~L~~H~~~  216 (585)
                      +||.|+ |++.|..+..|.+|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRG   25 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTT
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHh
Confidence            556666 66666666666666533

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.52  E-value=3.3e-05  Score=51.93  Aligned_cols=32  Identities=13%  Similarity=0.134  Sum_probs=29.4

Q ss_pred             ccccccccCCCCcccCCCCCccCChhhhhhhhccccCCc
Q 007898          129 IRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEK  167 (585)
Q Consensus       129 ~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgek  167 (585)
                      .++++|.|++|+       +.|.....|..|+++|++++
T Consensus         5 ~~~~~~~C~~C~-------k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            5 SSGKTHLCDMCG-------KKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCSSCBCTTTC-------CBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCeecCcCC-------CCcCchHHHHHHHHHhcCCC
Confidence            388999999996       99999999999999999875

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.52  E-value=4e-05  Score=48.14  Aligned_cols=26  Identities=31%  Similarity=0.492  Sum_probs=21.6

Q ss_pred             CccccccccCCcccChhHHHHHHHHh
Q 007898          166 EKKWKCDKCSKRYAVQSDWKAHSKTC  191 (585)
Q Consensus       166 ekpy~C~~CgK~F~~~s~L~~H~r~h  191 (585)
                      +++|+|++|++.|.....|..|+++|
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHc
Confidence            46888888888888888888888764

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.51  E-value=3.3e-05  Score=48.84  Aligned_cols=23  Identities=39%  Similarity=0.800  Sum_probs=13.5

Q ss_pred             cceecC-CCCccCChHHHHHHHHH
Q 007898          194 REYRCD-CGTLFSRRDSFITHRAF  216 (585)
Q Consensus       194 kpy~C~-Cgk~F~~~s~L~~H~~~  216 (585)
                      ++|.|+ |++.|..+..|..|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRV   25 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTT
T ss_pred             cCccCCCCCcccCCHHHHHHHHHh
Confidence            556666 66666666666666533

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.49  E-value=3e-05  Score=54.42  Aligned_cols=31  Identities=13%  Similarity=0.178  Sum_probs=28.4

Q ss_pred             cccccccCC--CCcccCCCCCccCChhhhhhhhccccCCc
Q 007898          130 RKKVYVCPE--PNCVHHDPSRALGDLTGIKKHFCRKHGEK  167 (585)
Q Consensus       130 ~~k~y~C~~--CgC~~~~~~k~F~~~~~L~~H~r~Htgek  167 (585)
                      ++|||+|++  |+       +.|..+..|++|+++|+++.
T Consensus         6 gekp~~C~~~~C~-------k~F~~~~~L~~H~r~Htg~~   38 (38)
T 2eln_A            6 SGILLKCPTDGCD-------YSTPDKYKLQAHLKVHTALD   38 (38)
T ss_dssp             CCCCEECSSSSCC-------CEESCHHHHHHHHHHHSCCC
T ss_pred             CCCCCCCCCCCCC-------CccCCHHHHHHHHHhcCCCC
Confidence            899999987  85       99999999999999999863

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.49  E-value=6.3e-05  Score=47.85  Aligned_cols=22  Identities=41%  Similarity=0.670  Sum_probs=9.6

Q ss_pred             ccccccCCcccChhHHHHHHHH
Q 007898          169 WKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       169 y~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      |.|.+|++.|.....|..|+++
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~~   24 (30)
T 1klr_A            3 YQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCSSSSCCCSCSHHHHHHHHH
T ss_pred             ccCCCCCCccCCHHHHHHHHHH
Confidence            4444444444444444444444

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.62  E-value=1.6e-05  Score=49.63  Aligned_cols=26  Identities=38%  Similarity=0.763  Sum_probs=24.1

Q ss_pred             CcccccccCcccccccccchhccccc
Q 007898           91 NRFVCEICNKGFQRDQNLQLHRRGHN  116 (585)
Q Consensus        91 kpy~C~~Cgk~F~~~~~L~~H~r~H~  116 (585)
                      |+|+|++|++.|.....|..|+++|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            58999999999999999999999873

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.48  E-value=5.1e-05  Score=48.31  Aligned_cols=21  Identities=43%  Similarity=0.896  Sum_probs=9.6

Q ss_pred             cceecC-CCCccCChHHHHHHH
Q 007898          194 REYRCD-CGTLFSRRDSFITHR  214 (585)
Q Consensus       194 kpy~C~-Cgk~F~~~s~L~~H~  214 (585)
                      ++|.|+ |++.|.....|..|+
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~   23 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHL   23 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHH
T ss_pred             cCccCCCCCcccCCHHHHHHHH
Confidence            344444 444444444444444

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.46  E-value=3.8e-05  Score=51.79  Aligned_cols=32  Identities=19%  Similarity=0.307  Sum_probs=29.2

Q ss_pred             ccccccccCCCCcccCCCCCccCChhhhhhhhccccCCc
Q 007898          129 IRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEK  167 (585)
Q Consensus       129 ~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgek  167 (585)
                      .++++|+|++|+       +.|.....|..|+++|+++|
T Consensus         5 ~~~k~~~C~~C~-------k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            5 SSGKIFTCEYCN-------KVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             SCCCCEECTTTC-------CEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCEECCCCC-------ceeCCHHHHHHHHHHhCCCC
Confidence            378999999996       99999999999999999875

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.45  E-value=8.4e-05  Score=47.02  Aligned_cols=22  Identities=27%  Similarity=0.735  Sum_probs=8.7

Q ss_pred             ccccccCCcccChhHHHHHHHH
Q 007898          169 WKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       169 y~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      |.|++|++.|.....|..|+++
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 1ard_A            3 FVCEVCTRAFARQEHLKRHYRS   24 (29)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHH
T ss_pred             eECCCCCcccCCHHHHHHHHHH
Confidence            3333344444333333333333

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.44  E-value=3.7e-05  Score=52.47  Aligned_cols=30  Identities=13%  Similarity=0.254  Sum_probs=27.8

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhh-hccccCC
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKH-FCRKHGE  166 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H-~r~Htge  166 (585)
                      ++++|+|++|+       +.|..+..|..| +++|+++
T Consensus         6 ~~k~~~C~~C~-------k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            6 SGHLYYCSQCH-------YSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             SSCEEECSSSS-------CEEECHHHHHHHHHHHTCCC
T ss_pred             CCcCeECCCCC-------cccCCHHHHHHHHHHHccCc
Confidence            89999999996       999999999999 8999875

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.42  E-value=4.3e-05  Score=55.37  Aligned_cols=31  Identities=13%  Similarity=0.286  Sum_probs=28.4

Q ss_pred             cccccccC--CCCcccCCCCCccCChhhhhhhhccccCCc
Q 007898          130 RKKVYVCP--EPNCVHHDPSRALGDLTGIKKHFCRKHGEK  167 (585)
Q Consensus       130 ~~k~y~C~--~CgC~~~~~~k~F~~~~~L~~H~r~Htgek  167 (585)
                      ++++|+|+  .|+       +.|.....|+.|+++|+++|
T Consensus        15 ~~k~~~C~~~~C~-------k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           15 PDKTFECLFPGCT-------KTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             TTTEEECCCTTCC-------CEECSSSSHHHHHHHHTTTC
T ss_pred             CCCCeECCCCCCC-------CccCCHHHHHHHHHHccCCC
Confidence            89999996  695       99999999999999999875

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.42  E-value=8.6e-05  Score=46.80  Aligned_cols=22  Identities=36%  Similarity=0.720  Sum_probs=9.1

Q ss_pred             ccccccCCcccChhHHHHHHHH
Q 007898          169 WKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       169 y~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      |+|.+|++.|.....|..|+++
T Consensus         3 ~~C~~C~~~f~~~~~l~~H~~~   24 (29)
T 2m0e_A            3 HKCPHCDKKFNQVGNLKAHLKI   24 (29)
T ss_dssp             CCCSSCCCCCCTTTHHHHHHHH
T ss_pred             CcCCCCCcccCCHHHHHHHHHH
Confidence            3444444444444444444433

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.54  E-value=2.2e-05  Score=50.15  Aligned_cols=26  Identities=31%  Similarity=0.638  Sum_probs=24.6

Q ss_pred             CcccccccCcccccccccchhccccc
Q 007898           91 NRFVCEICNKGFQRDQNLQLHRRGHN  116 (585)
Q Consensus        91 kpy~C~~Cgk~F~~~~~L~~H~r~H~  116 (585)
                      ++|.|++|++.|.....|..|+++|+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~   26 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHT   26 (29)
Confidence            57999999999999999999999997

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.41  E-value=2.9e-05  Score=49.10  Aligned_cols=27  Identities=26%  Similarity=0.673  Sum_probs=25.1

Q ss_pred             cCcccccccCcccccccccchhccccc
Q 007898           90 TNRFVCEICNKGFQRDQNLQLHRRGHN  116 (585)
Q Consensus        90 ~kpy~C~~Cgk~F~~~~~L~~H~r~H~  116 (585)
                      +++|.|++|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcC
Confidence            478999999999999999999999985

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.53  E-value=2.2e-05  Score=50.24  Aligned_cols=27  Identities=33%  Similarity=0.593  Sum_probs=25.3

Q ss_pred             cCcccccccCcccccccccchhccccc
Q 007898           90 TNRFVCEICNKGFQRDQNLQLHRRGHN  116 (585)
Q Consensus        90 ~kpy~C~~Cgk~F~~~~~L~~H~r~H~  116 (585)
                      +++|+|++|++.|.....|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRIHT   27 (30)
Confidence            478999999999999999999999997

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.36  E-value=7.3e-05  Score=47.41  Aligned_cols=20  Identities=30%  Similarity=0.710  Sum_probs=8.2

Q ss_pred             ceecC-CCCccCChHHHHHHH
Q 007898          195 EYRCD-CGTLFSRRDSFITHR  214 (585)
Q Consensus       195 py~C~-Cgk~F~~~s~L~~H~  214 (585)
                      ||.|+ |++.|.....|..|+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~   22 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHI   22 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHH
T ss_pred             CccCCCCCchhCCHHHHHHHH
Confidence            34444 444444444444443

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.34  E-value=6.7e-05  Score=47.70  Aligned_cols=24  Identities=25%  Similarity=0.610  Sum_probs=13.7

Q ss_pred             ccccccccCCcccChhHHHHHHHH
Q 007898          167 KKWKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       167 kpy~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      ++|.|.+|++.|.....|..|+++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~   25 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLET   25 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHT
T ss_pred             cCccCCCCCcccCCHHHHHHHHHH
Confidence            455555555555555555555555

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.34  E-value=7.2e-05  Score=47.43  Aligned_cols=19  Identities=5%  Similarity=0.064  Sum_probs=9.7

Q ss_pred             CccCChhhhhhhhccccCC
Q 007898          148 RALGDLTGIKKHFCRKHGE  166 (585)
Q Consensus       148 k~F~~~~~L~~H~r~Htge  166 (585)
                      +.|.....|..|+++|+++
T Consensus        10 k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A           10 KRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CEESCSHHHHHHHTGGGSC
T ss_pred             chhCCHHHHHHHHHHhcCC
Confidence            5555555555555555443

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.33  E-value=0.0001  Score=46.48  Aligned_cols=22  Identities=23%  Similarity=0.652  Sum_probs=10.2

Q ss_pred             ceecC-CCCccCChHHHHHHHHH
Q 007898          195 EYRCD-CGTLFSRRDSFITHRAF  216 (585)
Q Consensus       195 py~C~-Cgk~F~~~s~L~~H~~~  216 (585)
                      +|.|+ |++.|.....|..|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRI   24 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHHH
Confidence            44444 44444444444444433

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.43  E-value=3.2e-05  Score=48.14  Aligned_cols=22  Identities=27%  Similarity=0.729  Sum_probs=11.6

Q ss_pred             ceecC-CCCccCChHHHHHHHHH
Q 007898          195 EYRCD-CGTLFSRRDSFITHRAF  216 (585)
Q Consensus       195 py~C~-Cgk~F~~~s~L~~H~~~  216 (585)
                      ||.|+ |++.|..+..|..|+++
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            45555 55555555555555543

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.31  E-value=0.00014  Score=47.43  Aligned_cols=24  Identities=29%  Similarity=0.720  Sum_probs=11.3

Q ss_pred             cccccc--ccCCcccChhHHHHHHHH
Q 007898          167 KKWKCD--KCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       167 kpy~C~--~CgK~F~~~s~L~~H~r~  190 (585)
                      ++|.|.  .|++.|.....|..|+++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~   27 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGG
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHH
Confidence            344444  444444444444444444

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.29  E-value=9.3e-05  Score=46.79  Aligned_cols=29  Identities=28%  Similarity=0.550  Sum_probs=26.4

Q ss_pred             cccccCCCCcccCCCCCccCChhhhhhhhccccCCc
Q 007898          132 KVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEK  167 (585)
Q Consensus       132 k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgek  167 (585)
                      ++|.|++|+       +.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~-------~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCT-------RAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTC-------CBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCC-------cccCCHHHHHHHHHHhcCCC
Confidence            579999996       99999999999999998874

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.27  E-value=0.00016  Score=45.62  Aligned_cols=28  Identities=25%  Similarity=0.661  Sum_probs=25.2

Q ss_pred             ccccccccCCcccChhHHHHHHHH-hCCc
Q 007898          167 KKWKCDKCSKRYAVQSDWKAHSKT-CGTR  194 (585)
Q Consensus       167 kpy~C~~CgK~F~~~s~L~~H~r~-hgek  194 (585)
                      ++|+|.+|++.|.....|..|+++ ++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            589999999999999999999999 5654

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.22  E-value=0.0001  Score=46.41  Aligned_cols=29  Identities=17%  Similarity=0.364  Sum_probs=26.5

Q ss_pred             cccccCCCCcccCCCCCccCChhhhhhhhccccCCc
Q 007898          132 KVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEK  167 (585)
Q Consensus       132 k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgek  167 (585)
                      ++|.|++|+       +.|.....|..|+++|++++
T Consensus         1 k~~~C~~C~-------~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCD-------KKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCC-------CCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCC-------cccCCHHHHHHHHHHhccCC
Confidence            589999996       99999999999999999875

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.22  E-value=0.00012  Score=46.56  Aligned_cols=30  Identities=30%  Similarity=0.449  Sum_probs=27.1

Q ss_pred             cccccCCCCcccCCCCCccCChhhhhhhhccccCCcc
Q 007898          132 KVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKK  168 (585)
Q Consensus       132 k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekp  168 (585)
                      ++|.|++|+       +.|.....|..|+++|+++++
T Consensus         1 k~~~C~~C~-------k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCE-------FRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSS-------CCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCC-------CccCCHHHHHHHHHHHccCCC
Confidence            579999996       999999999999999998764

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.29  E-value=5.2e-05  Score=48.27  Aligned_cols=19  Identities=21%  Similarity=0.419  Sum_probs=10.0

Q ss_pred             CccCChhhhhhhhccccCC
Q 007898          148 RALGDLTGIKKHFCRKHGE  166 (585)
Q Consensus       148 k~F~~~~~L~~H~r~Htge  166 (585)
                      +.|.....|..|+++|+++
T Consensus        10 k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A           10 KAFTQASSLIAHVRQHTGE   28 (29)
Confidence            5555555555555555443

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.18  E-value=0.00019  Score=46.77  Aligned_cols=30  Identities=13%  Similarity=0.252  Sum_probs=27.0

Q ss_pred             ccccccC--CCCcccCCCCCccCChhhhhhhhccccCCc
Q 007898          131 KKVYVCP--EPNCVHHDPSRALGDLTGIKKHFCRKHGEK  167 (585)
Q Consensus       131 ~k~y~C~--~CgC~~~~~~k~F~~~~~L~~H~r~Htgek  167 (585)
                      +++|.|+  .|+       +.|.....|..|+++|++++
T Consensus         1 ek~~~C~~~~C~-------k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCD-------KAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCC-------CCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCC-------CccCCHHHHHHHHHHccCCC
Confidence            4789999  895       99999999999999999875

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.18  E-value=0.0001  Score=50.20  Aligned_cols=31  Identities=23%  Similarity=0.482  Sum_probs=28.4

Q ss_pred             cccccccCC--CCcccCCCCCccCChhhhhhhhccccCCc
Q 007898          130 RKKVYVCPE--PNCVHHDPSRALGDLTGIKKHFCRKHGEK  167 (585)
Q Consensus       130 ~~k~y~C~~--CgC~~~~~~k~F~~~~~L~~H~r~Htgek  167 (585)
                      ++++|.|.+  |+       +.|.....|..|+++|+++|
T Consensus         5 ~~k~~~C~~~~C~-------k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            5 KKKQHICHIQGCG-------KVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SCCCEECCSTTCC-------CEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCC-------CccCCHHHHHHHHHhcCCCC
Confidence            889999995  95       99999999999999999875

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.18  E-value=0.0002  Score=46.36  Aligned_cols=17  Identities=6%  Similarity=0.147  Sum_probs=6.6

Q ss_pred             CccCChhhhhhhhcccc
Q 007898          148 RALGDLTGIKKHFCRKH  164 (585)
Q Consensus       148 k~F~~~~~L~~H~r~Ht  164 (585)
                      +.|.....|..|+++|+
T Consensus        12 k~f~~~~~L~~H~~~H~   28 (31)
T 1sp2_A           12 KRFTRSDELQRHKRTHT   28 (31)
T ss_dssp             CBCSSHHHHHHHHTTTS
T ss_pred             cccCCHhHHHHHHHHhc
Confidence            33333333333333333

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.26  E-value=5.7e-05  Score=48.23  Aligned_cols=24  Identities=21%  Similarity=0.570  Sum_probs=11.2

Q ss_pred             ccccccccCCcccChhHHHHHHHH
Q 007898          167 KKWKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       167 kpy~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      ++|+|.+|++.|.....|..|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~   25 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRI   25 (30)
Confidence            344444444444444444444444

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.16  E-value=0.00019  Score=46.50  Aligned_cols=28  Identities=25%  Similarity=0.724  Sum_probs=24.7

Q ss_pred             cccccc--ccCCcccChhHHHHHHHH-hCCc
Q 007898          167 KKWKCD--KCSKRYAVQSDWKAHSKT-CGTR  194 (585)
Q Consensus       167 kpy~C~--~CgK~F~~~s~L~~H~r~-hgek  194 (585)
                      +||+|+  .|++.|.....|..|+++ ++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            589998  999999999999999999 4553

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.15  E-value=0.00012  Score=46.70  Aligned_cols=26  Identities=31%  Similarity=0.759  Sum_probs=24.2

Q ss_pred             CcccccccCcccccccccchh-ccccc
Q 007898           91 NRFVCEICNKGFQRDQNLQLH-RRGHN  116 (585)
Q Consensus        91 kpy~C~~Cgk~F~~~~~L~~H-~r~H~  116 (585)
                      ++|.|.+|++.|.....|..| +++|.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~   27 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHS   27 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHcc
Confidence            579999999999999999999 78887

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.09  E-value=0.00023  Score=44.28  Aligned_cols=14  Identities=21%  Similarity=0.598  Sum_probs=5.0

Q ss_pred             CCCccCChHHHHHH
Q 007898          200 CGTLFSRRDSFITH  213 (585)
Q Consensus       200 Cgk~F~~~s~L~~H  213 (585)
                      |++.|..+..|.+|
T Consensus         7 C~k~f~~~~~l~~H   20 (27)
T 1znf_A            7 CERSFVEKSALSRH   20 (27)
T ss_dssp             SCCBCSSHHHHHHH
T ss_pred             CCCcCCCHHHHHHH
Confidence            33333333333333

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.05  E-value=0.00027  Score=45.04  Aligned_cols=19  Identities=21%  Similarity=0.188  Sum_probs=9.7

Q ss_pred             CccCChhhhhhh-hccccCC
Q 007898          148 RALGDLTGIKKH-FCRKHGE  166 (585)
Q Consensus       148 k~F~~~~~L~~H-~r~Htge  166 (585)
                      +.|.....|..| +++|+++
T Consensus        10 k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A           10 RAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CBCSSSHHHHHHHTTTSCCC
T ss_pred             cccCChHHHHHHHHHHccCC
Confidence            555555555555 4455443

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=96.98  E-value=0.00032  Score=43.55  Aligned_cols=22  Identities=23%  Similarity=0.688  Sum_probs=11.3

Q ss_pred             ccccccCCcccChhHHHHHHHH
Q 007898          169 WKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       169 y~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      |+|.+|+|.|.....|.+|+++
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~~   23 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQRV   23 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGG
T ss_pred             ccCCCCCCcCCCHHHHHHHHHH
Confidence            4455555555555555555444

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=96.74  E-value=0.00026  Score=44.65  Aligned_cols=26  Identities=27%  Similarity=0.689  Sum_probs=24.3

Q ss_pred             Cccccc--ccCcccccccccchhccccc
Q 007898           91 NRFVCE--ICNKGFQRDQNLQLHRRGHN  116 (585)
Q Consensus        91 kpy~C~--~Cgk~F~~~~~L~~H~r~H~  116 (585)
                      ++|+|.  .|++.|.....|..|+++|+
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            579999  99999999999999999985

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.58  E-value=0.0033  Score=49.08  Aligned_cols=44  Identities=18%  Similarity=0.294  Sum_probs=28.3

Q ss_pred             cCCcccChhHHHHHHHH-h-CC------cceecC---CCCccCChHHHHHHHHHh
Q 007898          174 CSKRYAVQSDWKAHSKT-C-GT------REYRCD---CGTLFSRRDSFITHRAFC  217 (585)
Q Consensus       174 CgK~F~~~s~L~~H~r~-h-ge------kpy~C~---Cgk~F~~~s~L~~H~~~h  217 (585)
                      |++.|.+...|..|+.. | +.      ++|.|.   |++.+.....|+.|+++.
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            66666666666666543 4 22      267775   777777777777777654

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=96.51  E-value=0.0023  Score=50.04  Aligned_cols=52  Identities=13%  Similarity=0.312  Sum_probs=43.9

Q ss_pred             cccCCCCcccCCCCCccCChhhhhhhh-ccccCCc------ccccc--ccCCcccChhHHHHHHHH
Q 007898          134 YVCPEPNCVHHDPSRALGDLTGIKKHF-CRKHGEK------KWKCD--KCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       134 y~C~~CgC~~~~~~k~F~~~~~L~~H~-r~Htgek------py~C~--~CgK~F~~~s~L~~H~r~  190 (585)
                      |.|..-+|     ++.|.....|..|+ +.|.+.+      .|.|.  .|++.+.....|..|+++
T Consensus         2 l~C~W~~C-----~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A            2 LKCKWKEC-----PESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             CCCCCTTC-----CCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             CeEeeCCC-----CCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccc
Confidence            45666544     79999999999998 4787765      79996  799999999999999987

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=96.13  E-value=0.0016  Score=40.72  Aligned_cols=23  Identities=17%  Similarity=0.576  Sum_probs=14.3

Q ss_pred             ccccc--ccCCcccChhHHHHHHHH
Q 007898          168 KWKCD--KCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       168 py~C~--~CgK~F~~~s~L~~H~r~  190 (585)
                      +|+|+  .|++.|.....|..|+++
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~   26 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKI   26 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGG
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHH
Confidence            45666  666666666666666655

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.00  E-value=0.0013  Score=58.81  Aligned_cols=84  Identities=12%  Similarity=0.210  Sum_probs=50.0

Q ss_pred             cCcccccccCcccccccccchhc--ccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCCc
Q 007898           90 TNRFVCEICNKGFQRDQNLQLHR--RGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEK  167 (585)
Q Consensus        90 ~kpy~C~~Cgk~F~~~~~L~~H~--r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgek  167 (585)
                      .+++.|.+|...|.....+..|.  +.|..            ..+.|.+. |+.....+++.+...    .+...+.+.+
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkkH~~------------~v~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~   92 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRKHAN------------KVRRYMAI-NQGEDSVPAKKFKAA----PAEISDGEDR   92 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHHHHH------------HHHHHHHH-TTCCCCCSCCCCSCC----SSCCSSCCCT
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHHHHH------------HHHHHhcc-cCcccCCCCCccCCC----ccccccCCCC
Confidence            36799999999999999999998  45531            11233331 111000012333211    1333455666


Q ss_pred             cccccccCCcccChhHHHHHHHH
Q 007898          168 KWKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       168 py~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      .|.|.+|++.|.....|..|...
T Consensus        93 ~~~C~~C~~~f~s~~~~~~H~~g  115 (127)
T 1zu1_A           93 SKCCPVCNMTFSSPVVAESHYIG  115 (127)
T ss_dssp             TTEETTTTEECSSHHHHHHHHTS
T ss_pred             CeEcCCCCCEeCCHHHHHHHHCC
Confidence            77788888888888877777654

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.18  E-value=0.013  Score=54.42  Aligned_cols=64  Identities=19%  Similarity=0.431  Sum_probs=42.6

Q ss_pred             ChhhhhhhhccccCCccccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCChHHHHHHHHHhh
Q 007898          152 DLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAFCD  218 (585)
Q Consensus       152 ~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~~~h~  218 (585)
                      ....|..|.. .=.-++..|..|+..+ .+..|..|... ...+...|. |+..|..+ .|..|..++.
T Consensus        95 ~~~~l~~H~~-~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~~-~l~~H~~~~~  160 (170)
T 3hcs_A           95 ELRHLEDHQA-HCEFALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAFE-DKEIHDQNCP  160 (170)
T ss_dssp             EGGGHHHHHT-TCTTSEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEGG-GHHHHHTTCC
T ss_pred             cHhHHHHHHh-cCCceeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCHH-HHHhHHHhCc
Confidence            3455666653 2234566788888877 56678888866 777778888 88877554 4678875444

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.04  E-value=0.0049  Score=54.58  Aligned_cols=32  Identities=16%  Similarity=0.311  Sum_probs=24.3

Q ss_pred             hhccccCCccccccccCCcccChhHHHHHHHH
Q 007898          159 HFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       159 H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      +...|+|+++|.|..|+|.|.+...|..|+++
T Consensus        41 ~ded~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           41 FDPDLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SCSSSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             ccccCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            44567788888888888888888888888654

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.81  E-value=0.043  Score=39.82  Aligned_cols=25  Identities=20%  Similarity=0.557  Sum_probs=14.3

Q ss_pred             cceecC-CCCccCChHHHHHHHHHhh
Q 007898          194 REYRCD-CGTLFSRRDSFITHRAFCD  218 (585)
Q Consensus       194 kpy~C~-Cgk~F~~~s~L~~H~~~h~  218 (585)
                      .+|.|+ |++.|.....|+.||+.+-
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycC   36 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCC   36 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHC
T ss_pred             CceeCCcccccccchHHHHhhhhhcC
Confidence            345566 6666666666666665443

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=93.70  E-value=0.04  Score=48.92  Aligned_cols=73  Identities=14%  Similarity=0.186  Sum_probs=43.1

Q ss_pred             ccccccCCCCcccCCCCCccCChhhhhhhh--ccccCC-cccccccc------CCcccChhHHHHHHHH-hCCcceecC-
Q 007898          131 KKVYVCPEPNCVHHDPSRALGDLTGIKKHF--CRKHGE-KKWKCDKC------SKRYAVQSDWKAHSKT-CGTREYRCD-  199 (585)
Q Consensus       131 ~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~--r~Htge-kpy~C~~C------gK~F~~~s~L~~H~r~-hgekpy~C~-  199 (585)
                      .+++.|.+|.       ..|.....+..|.  +.|... +.|.+..+      ++.|....    +... .+.+.|.|+ 
T Consensus        30 ~~~~~C~~C~-------v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~C~~   98 (127)
T 1zu1_A           30 FSDTQCKVCS-------AVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGEDRSKCCPV   98 (127)
T ss_dssp             BCSSEETTTT-------EECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCCTTTEETT
T ss_pred             CCCCcCcCCC-------CEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCCCCCeEcCC
Confidence            3567788884       7777777777777  455432 34444211      22222111    1112 345667888 


Q ss_pred             CCCccCChHHHHHHH
Q 007898          200 CGTLFSRRDSFITHR  214 (585)
Q Consensus       200 Cgk~F~~~s~L~~H~  214 (585)
                      |.+.|.....|..|.
T Consensus        99 C~~~f~s~~~~~~H~  113 (127)
T 1zu1_A           99 CNMTFSSPVVAESHY  113 (127)
T ss_dssp             TTEECSSHHHHHHHH
T ss_pred             CCCEeCCHHHHHHHH
Confidence            888888888888886

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=93.61  E-value=0.014  Score=51.73  Aligned_cols=32  Identities=25%  Similarity=0.400  Sum_probs=28.2

Q ss_pred             ccccccCcccccccCcccccccccchhccccc
Q 007898           85 KTLMATNRFVCEICNKGFQRDQNLQLHRRGHN  116 (585)
Q Consensus        85 k~~~~~kpy~C~~Cgk~F~~~~~L~~H~r~H~  116 (585)
                      ..++|+++|.|..|+|.|.+...|..|+++..
T Consensus        43 ed~tGekpfyC~~C~K~F~~~~~L~~H~rsK~   74 (124)
T 1zr9_A           43 PDLPGGGLHRCLACARYFIDSTNLKTHFRSKD   74 (124)
T ss_dssp             SSSGGGGCSEETTTTEECSSHHHHHHHTTCHH
T ss_pred             ccCCCCcceEcccCcchhCCHHHHHHHHhhhh
Confidence            34678999999999999999999999988653

>1v65_A Riken cDNA 2610044O15; transcriptional repressor, heterochromatin, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.212.1.1

Probab=93.17  E-value=0.049  Score=40.83  Aligned_cols=25  Identities=28%  Similarity=0.333  Sum_probs=23.2

Q ss_pred             ccChHHHHHHHHHHHHhhccccccC
Q 007898            5 LIFHQQQQQQQQVLEENMSNLTSQS   29 (585)
Q Consensus         5 ~ld~qQqQlyqqVmlEn~~nL~S~~   29 (585)
                      ++++.|+.+|++||+|||.++++++
T Consensus        24 ~l~~~qk~ly~~v~le~~~~l~slg   48 (64)
T 1v65_A           24 LLDSSQKRLYEEVMLETYQNLTDIG   48 (64)
T ss_dssp             TSCHHHHHHHHHHHHHTTTSCCCSC
T ss_pred             CCCHHHhhheeehhhhhhcceeecc
Confidence            6899999999999999999999884

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=92.69  E-value=0.066  Score=49.59  Aligned_cols=138  Identities=17%  Similarity=0.258  Sum_probs=80.0

Q ss_pred             cCcccccccCcccccccccchhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhh-hhccccCCcc
Q 007898           90 TNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKK-HFCRKHGEKK  168 (585)
Q Consensus        90 ~kpy~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~-H~r~Htgekp  168 (585)
                      +..|.|.+|...|.....+   .-.|.-   |..-.......+...|+.|.       ..+.....+.. -++....+-.
T Consensus        16 ~~~~~C~IC~~~~~~pv~~---~CgH~f---C~~Ci~~~~~~~~~~CP~Cr-------~~~~~~~~~~~~~~~~~i~~l~   82 (170)
T 3hcs_A           16 ESKYECPICLMALREAVQT---PCGHRF---CKACIIKSIRDAGHKCPVDN-------EILLENQLFPDNFAKREILSLM   82 (170)
T ss_dssp             CGGGBCTTTCSBCSSEEEC---TTSCEE---EHHHHHHHHHHHCSBCTTTC-------CBCCGGGCEECHHHHHHHHTSE
T ss_pred             CCCCCCCCCChhhcCcEEC---CCCCHH---HHHHHHHHHHhCCCCCCCCc-------cCcchhhhhhhHHHHHHHhhcc
Confidence            4568999999888765332   123321   11111111122334899995       44433211110 0111112344


Q ss_pred             ccc--cccCCcccChhHHHHHHHHhCCcceecC-CCCccCChHHHHHHHHHhhhccccccccccCCCCccCCCCCCCCCc
Q 007898          169 WKC--DKCSKRYAVQSDWKAHSKTCGTREYRCD-CGTLFSRRDSFITHRAFCDALAEESTRAITGTNPILSSSSHHQPGI  245 (585)
Q Consensus       169 y~C--~~CgK~F~~~s~L~~H~r~hgekpy~C~-Cgk~F~~~s~L~~H~~~h~~~~~~~~r~ht~ekp~~cs~c~~sf~~  245 (585)
                      ..|  .-|+..+. ...|..|.+...-+++.|+ |+..+ .+..|..|..           .....+...|..|+..+. 
T Consensus        83 v~C~n~GC~~~~~-~~~l~~H~~~C~~~~v~C~~C~~~~-~r~~l~~H~~-----------~~C~~r~~~C~~C~~~~~-  148 (170)
T 3hcs_A           83 VKCPNEGCLHKME-LRHLEDHQAHCEFALMDCPQCQRPF-QKFHINIHIL-----------KDCPRRQVSCDNCAASMA-  148 (170)
T ss_dssp             EECCSTTCCCEEE-GGGHHHHHTTCTTSEEECTTTCCEE-EGGGHHHHHH-----------HTCTTCEEECTTTCCEEE-
T ss_pred             cCCCCCCCCceec-HhHHHHHHhcCCceeeECCCCChHH-HHHHHHHHhh-----------hhCCCCCeECCCCCCccC-
Confidence            667  46887665 5678899866777899999 99998 5566889983           344567788999987542 


Q ss_pred             CCCcccccc
Q 007898          246 VAGASSHVN  254 (585)
Q Consensus       246 ~s~l~sH~~  254 (585)
                      ...+..|..
T Consensus       149 ~~~l~~H~~  157 (170)
T 3hcs_A          149 FEDKEIHDQ  157 (170)
T ss_dssp             GGGHHHHHT
T ss_pred             HHHHHhHHH
Confidence            233444443

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.09  E-value=0.11  Score=37.71  Aligned_cols=24  Identities=17%  Similarity=0.462  Sum_probs=20.2

Q ss_pred             ccccccccCCcccChhHHHHHHHH
Q 007898          167 KKWKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       167 kpy~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      -.|.|+.|++.|.....|++||+.
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            468888888888888888888886

>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}

Probab=83.23  E-value=1.1  Score=35.47  Aligned_cols=60  Identities=15%  Similarity=0.336  Sum_probs=33.4

Q ss_pred             ccccccc-CCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHHhCCcceec
Q 007898          130 RKKVYVC-PEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRC  198 (585)
Q Consensus       130 ~~k~y~C-~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~hgekpy~C  198 (585)
                      ...+-.| ..|+       ..+ .+..|..|....-..+...|.+|+..|. ...|..|.......+-.|
T Consensus        13 ~~~~v~C~~~C~-------~~v-~r~~l~~H~~~~C~~r~v~C~~C~~~~~-~~~l~~H~~~Cp~~~v~C   73 (76)
T 2yuc_A           13 SFNVIPCPNRCP-------MKL-SRRDLPAHLQHDCPKRRLKCEFCGCDFS-GEAYESHEGMCPQESSGP   73 (76)
T ss_dssp             CCSCCBCTTCCS-------CBC-CSSSSTTTTTTSCTTSCCCCSSSCCCCC-HHHHHHTTTSCTTSSCCC
T ss_pred             CCcccCCCcccc-------HHh-hHhHHHhhCHhhCCCcceECCCCCCccC-HHHHHHHHhHCCCCccCC
Confidence            3455667 3553       333 3455667766544556677877877775 345666654333333333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	585
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.38
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.34
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.86
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.81
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.78
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.78
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.75
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.71
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.66
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.62
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.61
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.53
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.5
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.47
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.46
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.46
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.44
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.35
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.35
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.35
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.34
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.33
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.3
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.29
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.27
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.26
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.25
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.21
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	97.99
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	97.97
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.92
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.92
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.89
d1v65a_	64	hypotheical protein 2610044O15Rik {Mouse (Mus musc	97.88
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.86
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.85
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.8
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.76
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.72
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.7
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.69
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.67
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.65
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.63
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.38
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.3
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.2
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.06
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.05
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.02
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	96.79
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.74
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.71
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.48
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	96.35
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.34
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.3
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.3
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.28
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.91
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.74
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.69
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	95.65
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	95.61
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	95.52
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	95.52
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	95.48
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.43
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.28
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	94.82
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	94.71
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	94.69
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.68
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	94.55
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	94.42
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.34
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.31
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.27
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	94.0
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	93.94
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	93.79
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	93.76
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	93.61
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	93.61
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.49
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	93.46
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	93.43
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	93.41
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	93.32
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	93.2
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	92.49
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	92.37
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	91.01
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	90.62
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	90.13
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	89.56
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	88.25
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	85.81
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	85.16
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	84.72
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	84.49
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	83.52
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	82.74
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	81.77
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	81.68
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	80.69
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	80.33
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	80.04

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=9.6e-14  Score=104.11  Aligned_cols=50  Identities=28%  Similarity=0.700  Sum_probs=27.8

Q ss_pred             CccccccccCCcccChhHHHHHHHH-hCCcceecC-CCCccCChHHHHHHHHH
Q 007898          166 EKKWKCDKCSKRYAVQSDWKAHSKT-CGTREYRCD-CGTLFSRRDSFITHRAF  216 (585)
Q Consensus       166 ekpy~C~~CgK~F~~~s~L~~H~r~-hgekpy~C~-Cgk~F~~~s~L~~H~~~  216 (585)
                      ||+|+|+ |||.|..+..|..|+++ .+++||.|. |++.|..+..|..|+++
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~   52 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKI   52 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhc
Confidence            4555553 55555555555555555 455555555 55555555555555543

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.3e-13  Score=103.40  Aligned_cols=53  Identities=19%  Similarity=0.501  Sum_probs=50.3

Q ss_pred             ccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCCcccChhHHHHHHHHh
Q 007898          131 KKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTC  191 (585)
Q Consensus       131 ~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~h  191 (585)
                      ||+|+| .||       +.|..+..|..|+++|+++|||+|.+||+.|.....|..|+++|
T Consensus         1 EK~y~C-~Cg-------k~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCG-------KSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTS-------CEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCC-------CeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            689999 596       99999999999999999999999999999999999999999874

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=4.3e-10  Score=77.81  Aligned_cols=36  Identities=28%  Similarity=0.677  Sum_probs=32.0

Q ss_pred             hhhccccCCccccccccCCcccChhHHHHHHHH-hCC
Q 007898          158 KHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGT  193 (585)
Q Consensus       158 ~H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hge  193 (585)
                      +|+++|+++|||+|++|||.|...++|.+|+++ +||
T Consensus         2 rH~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            688999999999999999999999999999998 554

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=8.9e-10  Score=75.67  Aligned_cols=33  Identities=18%  Similarity=0.426  Sum_probs=30.0

Q ss_pred             hhccccCCccccccccCCcccChhHHHHHHHHh
Q 007898          159 HFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTC  191 (585)
Q Consensus       159 H~r~Htgekpy~C~~CgK~F~~~s~L~~H~r~h  191 (585)
                      |.|+|+|||||+|++|+|.|..+++|.+|+++|
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H   34 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH   34 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGG
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcC
Confidence            788999999999999999999999999998875

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.3e-09  Score=74.38  Aligned_cols=33  Identities=24%  Similarity=0.467  Sum_probs=27.4

Q ss_pred             ccccCCccccccccCCcccChhHHHHHHHHhCC
Q 007898          161 CRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGT  193 (585)
Q Consensus       161 r~Htgekpy~C~~CgK~F~~~s~L~~H~r~hge  193 (585)
                      |+|+|||||+|.+|||.|..++.|..|+++|.+
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~   33 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHD   33 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTC
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCC
Confidence            578888888888888888888888888888433

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.3e-09  Score=75.45  Aligned_cols=12  Identities=8%  Similarity=0.282  Sum_probs=4.5

Q ss_pred             CccCChhhhhhh
Q 007898          148 RALGDLTGIKKH  159 (585)
Q Consensus       148 k~F~~~~~L~~H  159 (585)
                      |.|....+|++|
T Consensus        13 k~F~~~~~L~~H   24 (39)
T d2epsa1          13 KGFSRPDHLNGH   24 (39)
T ss_dssp             CEESSHHHHHHH
T ss_pred             CCcCChHHhhcc
Confidence            333333333333

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.1e-09  Score=75.75  Aligned_cols=35  Identities=23%  Similarity=0.543  Sum_probs=32.3

Q ss_pred             CCccccccccCCcccChhHHHHHHH-H-hCCcceecC
Q 007898          165 GEKKWKCDKCSKRYAVQSDWKAHSK-T-CGTREYRCD  199 (585)
Q Consensus       165 gekpy~C~~CgK~F~~~s~L~~H~r-~-hgekpy~C~  199 (585)
                      .+|||+|++|||.|...++|++|++ + .+||||+|+
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            4799999999999999999999987 5 699999996

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=2.8e-09  Score=70.96  Aligned_cols=29  Identities=28%  Similarity=0.543  Sum_probs=21.4

Q ss_pred             cccCCccccccccCCcccChhHHHHHHHH
Q 007898          162 RKHGEKKWKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       162 ~Htgekpy~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      +|+|+|||+|.+|||.|..+++|..|+++
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~   29 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRV   29 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHG
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccc
Confidence            46777777777777777777777777777

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=4.4e-09  Score=71.59  Aligned_cols=33  Identities=24%  Similarity=0.448  Sum_probs=27.1

Q ss_pred             ccccCCccccccccCCcccChhHHHHHHHH-hCC
Q 007898          161 CRKHGEKKWKCDKCSKRYAVQSDWKAHSKT-CGT  193 (585)
Q Consensus       161 r~Htgekpy~C~~CgK~F~~~s~L~~H~r~-hge  193 (585)
                      |+|+|||||+|++|+|.|..+.+|++|++. |++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            578888888888888888888888888766 654

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.62  E-value=7.3e-09  Score=69.87  Aligned_cols=29  Identities=17%  Similarity=0.506  Sum_probs=19.1

Q ss_pred             ccCCccccccccCCcccChhHHHHHHHHh
Q 007898          163 KHGEKKWKCDKCSKRYAVQSDWKAHSKTC  191 (585)
Q Consensus       163 Htgekpy~C~~CgK~F~~~s~L~~H~r~h  191 (585)
                      |+|||||+|++|+|.|..+.+|++|+++|
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~H   30 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVH   30 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGG
T ss_pred             CCCCccccCCCCCCcccChHHHHHHcccc
Confidence            45666666666666666666666666664

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=6.2e-09  Score=71.80  Aligned_cols=37  Identities=19%  Similarity=0.376  Sum_probs=34.5

Q ss_pred             hhcccccCccccccchhhhccccccccCCCCcccCCCCCccCChhhhhhhhccccCC
Q 007898          110 LHRRGHNLPWKLKQRTSKEIRKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGE  166 (585)
Q Consensus       110 ~H~r~H~~~~~~~~~~~~~~~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htge  166 (585)
                      +|+++|+             ++|||+|++||       |.|...++|..|+++|+||
T Consensus         2 rH~~~Ht-------------~ekpy~C~~Cg-------K~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEWQQR-------------ERRRYKCDECG-------KSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCSCCC-------------CSCSSBCSSSC-------CBCSCHHHHHHHHTTTCCS
T ss_pred             ccCcccC-------------CCCCEecCCCC-------ceeeCHHHHHHhCccCCCC
Confidence            5788888             99999999996       9999999999999999997

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=6.8e-09  Score=69.08  Aligned_cols=31  Identities=29%  Similarity=0.504  Sum_probs=29.9

Q ss_pred             cccccCcccccccCcccccccccchhccccc
Q 007898           86 TLMATNRFVCEICNKGFQRDQNLQLHRRGHN  116 (585)
Q Consensus        86 ~~~~~kpy~C~~Cgk~F~~~~~L~~H~r~H~  116 (585)
                      +|+++|||+|.+|||.|.....|..|+++|+
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~Ht   31 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHT   31 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGG
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccC
Confidence            5889999999999999999999999999998

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.50  E-value=1.2e-08  Score=69.84  Aligned_cols=34  Identities=32%  Similarity=0.677  Sum_probs=32.3

Q ss_pred             CcccccccCcccccccCcccccccccchhccccc
Q 007898           83 SPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHN  116 (585)
Q Consensus        83 ~~k~~~~~kpy~C~~Cgk~F~~~~~L~~H~r~H~  116 (585)
                      +.++|+++|||+|++|+|.|..+.+|.+|+++|.
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            5789999999999999999999999999999985

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.1e-08  Score=69.55  Aligned_cols=32  Identities=25%  Similarity=0.572  Sum_probs=30.7

Q ss_pred             ccccccCcccccccCcccccccccchhccccc
Q 007898           85 KTLMATNRFVCEICNKGFQRDQNLQLHRRGHN  116 (585)
Q Consensus        85 k~~~~~kpy~C~~Cgk~F~~~~~L~~H~r~H~  116 (585)
                      ++|+++|||+|++|||.|..+..|..|+++|+
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~   32 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH   32 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTT
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccC
Confidence            57999999999999999999999999999997

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=1.3e-08  Score=68.53  Aligned_cols=30  Identities=30%  Similarity=0.541  Sum_probs=28.9

Q ss_pred             ccccCcccccccCcccccccccchhccccc
Q 007898           87 LMATNRFVCEICNKGFQRDQNLQLHRRGHN  116 (585)
Q Consensus        87 ~~~~kpy~C~~Cgk~F~~~~~L~~H~r~H~  116 (585)
                      ++++|||+|++|+|.|..+.+|++|+++|+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht   31 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHT   31 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGT
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccC
Confidence            679999999999999999999999999997

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=3.9e-08  Score=62.76  Aligned_cols=26  Identities=31%  Similarity=0.595  Sum_probs=16.1

Q ss_pred             CcceecC-CCCccCChHHHHHHHHHhh
Q 007898          193 TREYRCD-CGTLFSRRDSFITHRAFCD  218 (585)
Q Consensus       193 ekpy~C~-Cgk~F~~~s~L~~H~~~h~  218 (585)
                      ||||+|. |+|.|.+++.|++|+++|.
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HT   27 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHT   27 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCCcc
Confidence            4666666 6666666666666665553

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.44  E-value=2.9e-08  Score=71.55  Aligned_cols=40  Identities=23%  Similarity=0.405  Sum_probs=33.2

Q ss_pred             hhhhhhhccccCCccccccc--cCCcccChhHHHHHHHH-hCCc
Q 007898          154 TGIKKHFCRKHGEKKWKCDK--CSKRYAVQSDWKAHSKT-CGTR  194 (585)
Q Consensus       154 ~~L~~H~r~Htgekpy~C~~--CgK~F~~~s~L~~H~r~-hgek  194 (585)
                      ..|.+|++ |+++|||+|++  |+|.|..+++|+.|+++ +|||
T Consensus         5 ~~l~~h~~-h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           5 GSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SSGGGSCE-EETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             chhcchhh-ccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            45677775 89999999987  99999999999999998 5764

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.35  E-value=1.1e-07  Score=61.35  Aligned_cols=18  Identities=22%  Similarity=0.451  Sum_probs=6.8

Q ss_pred             CccCChhhhhhhhccccC
Q 007898          148 RALGDLTGIKKHFCRKHG  165 (585)
Q Consensus       148 k~F~~~~~L~~H~r~Htg  165 (585)
                      +.|.....|++|+++|+|
T Consensus        10 k~F~~~~~L~~H~r~HTg   27 (29)
T d2adra1          10 RAFARQEHLKRHYRSHTN   27 (29)
T ss_dssp             CCBSCHHHHHHHHHTTTS
T ss_pred             CCCCCchHcccccCcccC
Confidence            333333333333333333

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=8.7e-08  Score=61.13  Aligned_cols=25  Identities=20%  Similarity=0.618  Sum_probs=17.6

Q ss_pred             CccccccccCCcccChhHHHHHHHH
Q 007898          166 EKKWKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       166 ekpy~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      ||||+|.+|+|.|..+++|.+|+++
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~   25 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRT   25 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHH
T ss_pred             CcCccCCCCcCEecccccccccCCC
Confidence            5677777777777777777777766

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=5.8e-08  Score=65.82  Aligned_cols=34  Identities=24%  Similarity=0.725  Sum_probs=24.4

Q ss_pred             cccCCCCcccCCCCCccCChhhhhhhhccccCCcccccc
Q 007898          134 YVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCD  172 (585)
Q Consensus       134 y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~  172 (585)
                      |.|++-+|     ++.|..+..|++|+++|+|+|||+|+
T Consensus         2 f~C~~~~C-----~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPAC-----GKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTT-----CCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCC-----CCeeCChhHhccccCeeCCCCCEeCC
Confidence            56666333     47777777777777777777777775

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.34  E-value=7.9e-08  Score=61.97  Aligned_cols=28  Identities=21%  Similarity=0.641  Sum_probs=26.2

Q ss_pred             ccccccccCCcccChhHHHHHHHH-hCCc
Q 007898          167 KKWKCDKCSKRYAVQSDWKAHSKT-CGTR  194 (585)
Q Consensus       167 kpy~C~~CgK~F~~~s~L~~H~r~-hgek  194 (585)
                      |||+|++|+|.|...++|++|+++ +|||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            699999999999999999999999 6875

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.2e-07  Score=59.11  Aligned_cols=24  Identities=33%  Similarity=0.863  Sum_probs=15.3

Q ss_pred             cceecC-CCCccCChHHHHHHHHHh
Q 007898          194 REYRCD-CGTLFSRRDSFITHRAFC  217 (585)
Q Consensus       194 kpy~C~-Cgk~F~~~s~L~~H~~~h  217 (585)
                      |||+|. |||.|.+++.|.+|+++|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            466666 666666666666666555

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.1e-07  Score=64.41  Aligned_cols=31  Identities=23%  Similarity=0.514  Sum_probs=27.0

Q ss_pred             HH-hCCcceecC-CCCccCChHHHHHHHHHhhh
Q 007898          189 KT-CGTREYRCD-CGTLFSRRDSFITHRAFCDA  219 (585)
Q Consensus       189 r~-hgekpy~C~-Cgk~F~~~s~L~~H~~~h~~  219 (585)
                      |+ +|||||+|+ |+|.|.+++.|++|++.+|.
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~   33 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHT   33 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccC
Confidence            35 699999999 99999999999999866553

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.8e-07  Score=60.18  Aligned_cols=22  Identities=32%  Similarity=0.718  Sum_probs=8.1

Q ss_pred             ccccccCCcccChhHHHHHHHH
Q 007898          169 WKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       169 y~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      |.|.+|+|.|..+++|.+|+++
T Consensus         3 y~C~~C~k~F~~~s~L~~H~r~   24 (29)
T d1sp1a_           3 FACPECPKRFMRSDHLSKHIKT   24 (29)
T ss_dssp             SCCTTTTCCCSCSHHHHHHHHG
T ss_pred             EECCcCCCeecchHHhhhhcCc
Confidence            3333333333333333333333

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.5e-07  Score=58.64  Aligned_cols=25  Identities=28%  Similarity=0.597  Sum_probs=22.1

Q ss_pred             ccccccccCCcccChhHHHHHHHHh
Q 007898          167 KKWKCDKCSKRYAVQSDWKAHSKTC  191 (585)
Q Consensus       167 kpy~C~~CgK~F~~~s~L~~H~r~h  191 (585)
                      |||+|.+|||.|..++.|..|+|+|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCC
Confidence            6899999999999999999998874

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.5e-07  Score=60.53  Aligned_cols=29  Identities=24%  Similarity=0.448  Sum_probs=27.5

Q ss_pred             cccccCCCCcccCCCCCccCChhhhhhhhccccCCc
Q 007898          132 KVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEK  167 (585)
Q Consensus       132 k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgek  167 (585)
                      |||.|++||       |.|..++.|.+|+++|+|||
T Consensus         1 Kpy~C~~C~-------k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECP-------KRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTT-------CCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCC-------CeecchHHhhhhcCccCCcC
Confidence            689999996       99999999999999999986

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.25  E-value=1.2e-07  Score=68.29  Aligned_cols=41  Identities=10%  Similarity=0.178  Sum_probs=35.2

Q ss_pred             cccchhcccccCccccccchhhhccccccccCC--CCcccCCCCCccCChhhhhhhhccccCCc
Q 007898          106 QNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPE--PNCVHHDPSRALGDLTGIKKHFCRKHGEK  167 (585)
Q Consensus       106 ~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~C~~--CgC~~~~~~k~F~~~~~L~~H~r~Htgek  167 (585)
                      ..|..|++ |.             ++++|+|++  |+       +.|...++|+.|+++|+|||
T Consensus         5 ~~l~~h~~-h~-------------gekpy~C~~~~C~-------k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           5 GSIDKYVK-EM-------------PDKTFECLFPGCT-------KTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SSGGGSCE-EE-------------TTTEEECCCTTCC-------CEECSSSSHHHHHHHHTTTC
T ss_pred             chhcchhh-cc-------------CCCCeECCcCCCC-------ccccCchHHHhhcccccCCC
Confidence            45666664 66             999999988  74       99999999999999999986

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2.8e-07  Score=62.40  Aligned_cols=30  Identities=33%  Similarity=0.816  Sum_probs=16.0

Q ss_pred             ccccc--cCCcccChhHHHHHHHH-hCCcceec
Q 007898          169 WKCDK--CSKRYAVQSDWKAHSKT-CGTREYRC  198 (585)
Q Consensus       169 y~C~~--CgK~F~~~s~L~~H~r~-hgekpy~C  198 (585)
                      |.|++  |+|.|.++.+|++|+++ .|+|||.|
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C   34 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC   34 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeC
Confidence            44544  55555555555555555 45555555

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.3e-06  Score=56.95  Aligned_cols=31  Identities=19%  Similarity=0.502  Sum_probs=20.8

Q ss_pred             cccccCCCCcccCCCCCccCChhhhhhhhccccCCc
Q 007898          132 KVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEK  167 (585)
Q Consensus       132 k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgek  167 (585)
                      |||.|++-+|     +|.|....+|++|+++|+|||
T Consensus         1 kpf~C~~~~C-----~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYC-----GKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTC-----CCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCC-----CcCcCChhHhhhhcCcccccC
Confidence            4677765333     477777777777777777765

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=2.1e-06  Score=55.93  Aligned_cols=21  Identities=38%  Similarity=0.977  Sum_probs=13.9

Q ss_pred             cceecC---CCCccCChHHHHHHH
Q 007898          194 REYRCD---CGTLFSRRDSFITHR  214 (585)
Q Consensus       194 kpy~C~---Cgk~F~~~s~L~~H~  214 (585)
                      |||.|+   |+|.|.+.+.|++|+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~   24 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHK   24 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHH
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhc
Confidence            466663   666666666666666

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=3e-06  Score=54.74  Aligned_cols=17  Identities=18%  Similarity=0.397  Sum_probs=6.5

Q ss_pred             CccCChhhhhhhhcccc
Q 007898          148 RALGDLTGIKKHFCRKH  164 (585)
Q Consensus       148 k~F~~~~~L~~H~r~Ht  164 (585)
                      |.|...++|++|+++|+
T Consensus        12 k~F~~~~~L~~H~r~Ht   28 (30)
T d2glia3          12 KSYSRLENLKTHLRSHT   28 (30)
T ss_dssp             CCCSSHHHHHHHHHHTT
T ss_pred             ceECChhHhhhhcCcCc
Confidence            33333333333333333

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.92  E-value=2.9e-06  Score=55.61  Aligned_cols=17  Identities=29%  Similarity=0.597  Sum_probs=6.4

Q ss_pred             cCCcccChhHHHHHHHH
Q 007898          174 CSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       174 CgK~F~~~s~L~~H~r~  190 (585)
                      |+|.|.+.++|++|+++
T Consensus        11 C~k~F~r~~~L~~H~r~   27 (32)
T d1zfda_          11 CDKAFVRNHDLIRHKKS   27 (32)
T ss_dssp             CCCCBSSSHHHHHHHGG
T ss_pred             CCCeeCCHHHHHHHhhh
Confidence            33333333333333333

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=2e-06  Score=55.54  Aligned_cols=27  Identities=33%  Similarity=0.647  Sum_probs=24.9

Q ss_pred             ccccccc--cCCcccChhHHHHHHHH-hCC
Q 007898          167 KKWKCDK--CSKRYAVQSDWKAHSKT-CGT  193 (585)
Q Consensus       167 kpy~C~~--CgK~F~~~s~L~~H~r~-hge  193 (585)
                      |||+|++  |+|.|.++++|++|+++ +||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            6899999  99999999999999999 564

>d1v65a_ a.212.1.1 (A:) hypotheical protein 2610044O15Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: KRAB domain (Kruppel-associated box)
superfamily: KRAB domain (Kruppel-associated box)
family: KRAB domain (Kruppel-associated box)
domain: hypotheical protein 2610044O15Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.88  E-value=2.7e-06  Score=64.46  Aligned_cols=27  Identities=26%  Similarity=0.261  Sum_probs=25.0

Q ss_pred             cccChHHHHHHHHHHHHhhccccccCC
Q 007898            4 GLIFHQQQQQQQQVLEENMSNLTSQSG   30 (585)
Q Consensus         4 q~ld~qQqQlyqqVmlEn~~nL~S~~g   30 (585)
                      .+|+++||.||||||+|||+||+|++.
T Consensus        23 ~~Ld~~Qk~LyrdVm~Eny~~l~slg~   49 (64)
T d1v65a_          23 DLLDSSQKRLYEEVMLETYQNLTDIGY   49 (64)
T ss_dssp             HTSCHHHHHHHHHHHHHTTTSCCCSCC
T ss_pred             hCcCHHHHHHHHHhHHHHhhhhheecc
Confidence            479999999999999999999999954

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=3.1e-06  Score=54.69  Aligned_cols=15  Identities=40%  Similarity=0.560  Sum_probs=6.9

Q ss_pred             CCCccCChHHHHHHH
Q 007898          200 CGTLFSRRDSFITHR  214 (585)
Q Consensus       200 Cgk~F~~~s~L~~H~  214 (585)
                      |+|.|.+++.|++|+
T Consensus        10 Cgk~F~~~~~L~~H~   24 (30)
T d1ubdc3          10 CGKRFSLDFNLRTHV   24 (30)
T ss_dssp             CCCEESCHHHHHHHH
T ss_pred             CCceECcHHHcCccc
Confidence            444444444444444

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=1.9e-06  Score=55.75  Aligned_cols=19  Identities=11%  Similarity=0.202  Sum_probs=10.2

Q ss_pred             CccCChhhhhhhhccccCC
Q 007898          148 RALGDLTGIKKHFCRKHGE  166 (585)
Q Consensus       148 k~F~~~~~L~~H~r~Htge  166 (585)
                      |+|...++|++|+|+|+||
T Consensus        12 k~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3          12 KRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CEESCHHHHHHHHHHHHCC
T ss_pred             ceECcHHHcCccccccCCC
Confidence            5555555555555555543

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.80  E-value=4.1e-06  Score=54.89  Aligned_cols=27  Identities=33%  Similarity=0.757  Sum_probs=24.2

Q ss_pred             CcceecC---CCCccCChHHHHHHHHHhhh
Q 007898          193 TREYRCD---CGTLFSRRDSFITHRAFCDA  219 (585)
Q Consensus       193 ekpy~C~---Cgk~F~~~s~L~~H~~~h~~  219 (585)
                      ||||.|+   |+|.|.+.+.|++|+++|..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            6999997   99999999999999977653

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=5.6e-06  Score=50.85  Aligned_cols=25  Identities=32%  Similarity=0.743  Sum_probs=17.8

Q ss_pred             CcceecC-CCCccCChHHHHHHHHHh
Q 007898          193 TREYRCD-CGTLFSRRDSFITHRAFC  217 (585)
Q Consensus       193 ekpy~C~-Cgk~F~~~s~L~~H~~~h  217 (585)
                      ||||.|+ ||+.|.+....++|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            5677777 777777777777776555

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=6.7e-06  Score=52.56  Aligned_cols=25  Identities=32%  Similarity=0.656  Sum_probs=16.5

Q ss_pred             cceecC---CCCccCChHHHHHHHHHhh
Q 007898          194 REYRCD---CGTLFSRRDSFITHRAFCD  218 (585)
Q Consensus       194 kpy~C~---Cgk~F~~~s~L~~H~~~h~  218 (585)
                      |||+|+   |+|.|.+.+.|++|+++|.
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~Ht   28 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHT   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccC
Confidence            566774   7777777777777765553

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=3.4e-06  Score=53.48  Aligned_cols=26  Identities=38%  Similarity=0.760  Sum_probs=24.4

Q ss_pred             Ccccccc--cCcccccccccchhccccc
Q 007898           91 NRFVCEI--CNKGFQRDQNLQLHRRGHN  116 (585)
Q Consensus        91 kpy~C~~--Cgk~F~~~~~L~~H~r~H~  116 (585)
                      |||+|+.  |+|.|.+..+|++|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            6899988  9999999999999999984

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.69  E-value=8.1e-06  Score=50.13  Aligned_cols=26  Identities=35%  Similarity=0.763  Sum_probs=21.1

Q ss_pred             CccccccccCCcccChhHHHHHHHHh
Q 007898          166 EKKWKCDKCSKRYAVQSDWKAHSKTC  191 (585)
Q Consensus       166 ekpy~C~~CgK~F~~~s~L~~H~r~h  191 (585)
                      ||||.|++||+.|.+....++|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            57888888888888888888887775

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=5.7e-06  Score=52.37  Aligned_cols=24  Identities=25%  Similarity=0.574  Sum_probs=12.8

Q ss_pred             cceecC---CCCccCChHHHHHHHHHh
Q 007898          194 REYRCD---CGTLFSRRDSFITHRAFC  217 (585)
Q Consensus       194 kpy~C~---Cgk~F~~~s~L~~H~~~h  217 (585)
                      |||.|+   |+|.|.+.+.|++|+++|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            355554   555555555555555444

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.65  E-value=5.8e-06  Score=52.89  Aligned_cols=29  Identities=24%  Similarity=0.668  Sum_probs=17.2

Q ss_pred             cccccCCCCcccCCCCCccCChhhhhhhhccccC
Q 007898          132 KVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHG  165 (585)
Q Consensus       132 k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htg  165 (585)
                      |||+|++.||     +|.|...++|++|+++|+|
T Consensus         1 Kp~~C~~~gC-----~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESC-----DRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTC-----CCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCC-----CcEECchhHhhhhcCccCC
Confidence            4566666443     4666666666666666654

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=5.6e-06  Score=49.25  Aligned_cols=25  Identities=40%  Similarity=0.805  Sum_probs=23.7

Q ss_pred             cccccccCcccccccccchhccccc
Q 007898           92 RFVCEICNKGFQRDQNLQLHRRGHN  116 (585)
Q Consensus        92 py~C~~Cgk~F~~~~~L~~H~r~H~  116 (585)
                      |++|+.|+|.|.++..|+.|+|.|+
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccC
Confidence            6799999999999999999999996

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=1.8e-05  Score=50.36  Aligned_cols=33  Identities=33%  Similarity=0.622  Sum_probs=29.5

Q ss_pred             cCcccccccCcccccccccchhcccccCccccccchhhhccccccc
Q 007898           90 TNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYV  135 (585)
Q Consensus        90 ~kpy~C~~Cgk~F~~~~~L~~H~r~H~~~~~~~~~~~~~~~~k~y~  135 (585)
                      .|...|+.|||.|.+...|.+|...|.             ++|||.
T Consensus         3 rk~~~ce~cgk~frdvyhlnrhklshs-------------~ekpys   35 (35)
T d2epra1           3 RKQVACEICGKIFRDVYHLNRHKLSHS-------------GEKPYS   35 (35)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGGSC-------------SCCCCC
T ss_pred             chhhhHHHHHHHHHHHHHHHhhhcccC-------------CCCCCC
Confidence            456789999999999999999999998             888873

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=5.1e-05  Score=45.06  Aligned_cols=17  Identities=12%  Similarity=0.231  Sum_probs=8.6

Q ss_pred             CccCChhhhhhhhcccc
Q 007898          148 RALGDLTGIKKHFCRKH  164 (585)
Q Consensus       148 k~F~~~~~L~~H~r~Ht  164 (585)
                      |.|+++..|+.|+|.|+
T Consensus         9 kcfsrkdklk~hmr~ht   25 (26)
T d2dmda2           9 KCFSRKDKLKTHMRCHT   25 (26)
T ss_dssp             BCCCCHHHHHHHGGGCC
T ss_pred             hHhcchhHHHHHhhccC
Confidence            45555555555555444

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=8.6e-05  Score=46.18  Aligned_cols=28  Identities=32%  Similarity=0.648  Sum_probs=19.1

Q ss_pred             CcceecC-CCCccCChHHHHHHHHHhhhc
Q 007898          193 TREYRCD-CGTLFSRRDSFITHRAFCDAL  220 (585)
Q Consensus       193 ekpy~C~-Cgk~F~~~s~L~~H~~~h~~~  220 (585)
                      ||||.|. |...|++++.+..|.+.|.+.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            4677777 777777777777777666543

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00018  Score=48.26  Aligned_cols=29  Identities=38%  Similarity=0.834  Sum_probs=24.0

Q ss_pred             hCCcceecC-CCCccCChHHHHHHHHHhhh
Q 007898          191 CGTREYRCD-CGTLFSRRDSFITHRAFCDA  219 (585)
Q Consensus       191 hgekpy~C~-Cgk~F~~~s~L~~H~~~h~~  219 (585)
                      +|.|||.|. |+|.|.+++++.+|+..|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~C~k   30 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTSCTK   30 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhhhhh
Confidence            367899999 99999999999999876653

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00015  Score=45.04  Aligned_cols=25  Identities=20%  Similarity=0.506  Sum_probs=18.4

Q ss_pred             cceecC---CCCccCChHHHHHHHHHhh
Q 007898          194 REYRCD---CGTLFSRRDSFITHRAFCD  218 (585)
Q Consensus       194 kpy~C~---Cgk~F~~~s~L~~H~~~h~  218 (585)
                      |||.|.   |+|.|...++|++|++.+|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhC
Confidence            577776   7777777777777776554

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00011  Score=46.78  Aligned_cols=30  Identities=20%  Similarity=0.377  Sum_probs=19.5

Q ss_pred             ccccCCCCcccCCCCCccCChhhhhhhhccccCCccc
Q 007898          133 VYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKW  169 (585)
Q Consensus       133 ~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy  169 (585)
                      ...|+.||       |.|.+...|.+|...|++||||
T Consensus         5 ~~~ce~cg-------k~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           5 QVACEICG-------KIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             SEEETTTT-------EEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhHHHHH-------HHHHHHHHHHhhhcccCCCCCC
Confidence            34566664       6666666666666666666665

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00027  Score=43.17  Aligned_cols=27  Identities=22%  Similarity=0.356  Sum_probs=22.8

Q ss_pred             cccCCCCcccCCCCCccCChhhhhhhhccccCCc
Q 007898          134 YVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEK  167 (585)
Q Consensus       134 y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgek  167 (585)
                      |.|++||       ......+-|++|+|.|++++
T Consensus         2 YvC~~Cg-------~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           2 YICEECG-------IRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CBCTTTC-------CBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccccC-------cccCCHHHHHHHHHHhcCCC
Confidence            7888886       88888888999999998874

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00024  Score=44.07  Aligned_cols=28  Identities=36%  Similarity=0.751  Sum_probs=15.3

Q ss_pred             cccccCCCCcccCCCCCccCChhhhhhhhcccc
Q 007898          132 KVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKH  164 (585)
Q Consensus       132 k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Ht  164 (585)
                      |||.|.+.||     .|.+.+.+.|++|++.++
T Consensus         1 KPY~Ck~~gC-----~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPYVCKLPGC-----TKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCEECCSTTT-----CCEESSHHHHHHHHHHSC
T ss_pred             CCeecccCCC-----CcccCCHHHHHHHHHhhC
Confidence            4555655554     455555555555555443

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00034  Score=43.43  Aligned_cols=26  Identities=23%  Similarity=0.555  Sum_probs=22.1

Q ss_pred             CccccccccCCcccChhHHHHHHHHh
Q 007898          166 EKKWKCDKCSKRYAVQSDWKAHSKTC  191 (585)
Q Consensus       166 ekpy~C~~CgK~F~~~s~L~~H~r~h  191 (585)
                      ||||.|++|...|.++..+..|.|.|
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrsh   26 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSH   26 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHH
T ss_pred             CCCcccchHHHHhhccccceEeeecc
Confidence            57888888888888888888888885

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.00033  Score=42.34  Aligned_cols=25  Identities=32%  Similarity=0.599  Sum_probs=23.5

Q ss_pred             cccccccCcccccccccchhccccc
Q 007898           92 RFVCEICNKGFQRDQNLQLHRRGHN  116 (585)
Q Consensus        92 py~C~~Cgk~F~~~~~L~~H~r~H~  116 (585)
                      .+.|.+|||.|...+.|++|..+|+
T Consensus         2 ~hvc~ecgkaf~essklkrh~lvht   26 (28)
T d1ubdc2           2 VHVCAECGKAFVESSKLKRHQLVHT   26 (28)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGGTS
T ss_pred             cchHHHHhHHHHHHHHHHHHhhccc
Confidence            4789999999999999999999997

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.00076  Score=40.72  Aligned_cols=19  Identities=26%  Similarity=0.420  Sum_probs=11.7

Q ss_pred             CccCChhhhhhhhccccCC
Q 007898          148 RALGDLTGIKKHFCRKHGE  166 (585)
Q Consensus       148 k~F~~~~~L~~H~r~Htge  166 (585)
                      |+|...+.|++|..+|+||
T Consensus        10 kaf~essklkrh~lvhtge   28 (28)
T d1ubdc2          10 KAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CEESSHHHHHHHGGGTSCC
T ss_pred             HHHHHHHHHHHHhhcccCC
Confidence            6666666666666666554

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.0011  Score=39.95  Aligned_cols=24  Identities=21%  Similarity=0.506  Sum_probs=18.0

Q ss_pred             cceecC-CCCccCChHHHHHHHHHh
Q 007898          194 REYRCD-CGTLFSRRDSFITHRAFC  217 (585)
Q Consensus       194 kpy~C~-Cgk~F~~~s~L~~H~~~h  217 (585)
                      |||+|. |...-...++|++|+++|
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            677777 777777777777777665

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.30  E-value=0.0012  Score=40.14  Aligned_cols=24  Identities=25%  Similarity=0.510  Sum_probs=19.2

Q ss_pred             cceecC---CCCccCChHHHHHHHHHh
Q 007898          194 REYRCD---CGTLFSRRDSFITHRAFC  217 (585)
Q Consensus       194 kpy~C~---Cgk~F~~~s~L~~H~~~h  217 (585)
                      .||+|.   |+|.|...+.|++|.++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            478886   888888888888888765

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.00076  Score=40.93  Aligned_cols=29  Identities=14%  Similarity=0.284  Sum_probs=18.0

Q ss_pred             ccccccCCCCcccCCCCCccCChhhhhhhhccccCC
Q 007898          131 KKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGE  166 (585)
Q Consensus       131 ~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htge  166 (585)
                      ++||+|..|.       +.-...+.|..|.|.|+|+
T Consensus         1 erpfkcqlcs-------y~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICP-------YASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSS-------CEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecc-------cccCCchheEEeeecccCc
Confidence            3566666663       5666666666666666653

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.0009  Score=44.80  Aligned_cols=27  Identities=26%  Similarity=0.717  Sum_probs=24.0

Q ss_pred             cCCccccccccCCcccChhHHHHHHHH
Q 007898          164 HGEKKWKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       164 tgekpy~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      +|.|||.|.+|+|.|.-+..+.+|...
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~~   27 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVTS   27 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhhh
Confidence            478999999999999999999999654

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.002  Score=38.76  Aligned_cols=25  Identities=28%  Similarity=0.480  Sum_probs=20.2

Q ss_pred             ccccccccCCcccChhHHHHHHHHh
Q 007898          167 KKWKCDKCSKRYAVQSDWKAHSKTC  191 (585)
Q Consensus       167 kpy~C~~CgK~F~~~s~L~~H~r~h  191 (585)
                      |||+|..|...-...+.|..|+|+|
T Consensus         2 kp~kck~cdyaaadsssl~kh~rih   26 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIH   26 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHS
T ss_pred             CCcccccccchhcchhhHhhhhhcc
Confidence            6788888888888888888888875

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.74  E-value=0.0037  Score=37.12  Aligned_cols=20  Identities=25%  Similarity=0.669  Sum_probs=9.3

Q ss_pred             ccccCCcccChhHHHHHHHH
Q 007898          171 CDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       171 C~~CgK~F~~~s~L~~H~r~  190 (585)
                      |+.|.|.|..+..|+.|.|.
T Consensus         3 cp~c~k~f~skyylkvhnr~   22 (27)
T d2dlqa4           3 CPTCHKKFLSKYYLKVHNRK   22 (27)
T ss_dssp             CTTTCCCCSSHHHHHHHHHH
T ss_pred             CcchHHHHHHhHhhhhcccc
Confidence            44444444444444444444

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.003  Score=38.60  Aligned_cols=26  Identities=31%  Similarity=0.555  Sum_probs=15.1

Q ss_pred             ccccccccCCcccChhHHHHHHHH-hC
Q 007898          167 KKWKCDKCSKRYAVQSDWKAHSKT-CG  192 (585)
Q Consensus       167 kpy~C~~CgK~F~~~s~L~~H~r~-hg  192 (585)
                      +||+|++|.....+.++|..|++. |+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            356666666555666666666555 54

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=95.65  E-value=0.0032  Score=36.79  Aligned_cols=17  Identities=24%  Similarity=0.690  Sum_probs=6.2

Q ss_pred             ccccCCcccChhHHHHH
Q 007898          171 CDKCSKRYAVQSDWKAH  187 (585)
Q Consensus       171 C~~CgK~F~~~s~L~~H  187 (585)
                      |..|.+.|..++.|.+|
T Consensus         3 cglcersfveksalsrh   19 (26)
T d1znfa_           3 CGLCERSFVEKSALSRH   19 (26)
T ss_dssp             CSSSCCBCSSHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHH
Confidence            33333333333333333

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0028  Score=38.59  Aligned_cols=22  Identities=18%  Similarity=0.608  Sum_probs=10.3

Q ss_pred             ccccccCCcccChhHHHHHHHH
Q 007898          169 WKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       169 y~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      |.|..|...|..+.+|..||+.
T Consensus         2 y~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           2 YHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             EECSSSSCEESSHHHHHHHHHS
T ss_pred             cccceeeeeEeeccchhHhhhh
Confidence            4444444444444444444443

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=95.52  E-value=0.0025  Score=37.29  Aligned_cols=23  Identities=22%  Similarity=0.687  Sum_probs=20.6

Q ss_pred             eecC-CCCccCChHHHHHHHHHhh
Q 007898          196 YRCD-CGTLFSRRDSFITHRAFCD  218 (585)
Q Consensus       196 y~C~-Cgk~F~~~s~L~~H~~~h~  218 (585)
                      |+|. |.+.|..++.|.+|++.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            7899 9999999999999996653

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0046  Score=40.73  Aligned_cols=27  Identities=22%  Similarity=0.661  Sum_probs=22.5

Q ss_pred             CCcceecC---CCCccCChHHHHHHHHHhh
Q 007898          192 GTREYRCD---CGTLFSRRDSFITHRAFCD  218 (585)
Q Consensus       192 gekpy~C~---Cgk~F~~~s~L~~H~~~h~  218 (585)
                      .+|||.|.   |+.+|.+.+.|..|++.|.
T Consensus         3 ddkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           3 DDKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TCCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCceecCCCCccccccchHHHHHhhhhhe
Confidence            47889995   9999999999988887775

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0048  Score=37.74  Aligned_cols=24  Identities=42%  Similarity=0.660  Sum_probs=14.1

Q ss_pred             ccccccccCCcccChhHHHHHHHH
Q 007898          167 KKWKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       167 kpy~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      |||.|.+|.......++|+.|.++
T Consensus         1 kpy~cqyc~yrsadssnlkthikt   24 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             CCccccccccccccchhhhhhhhc
Confidence            455566665555556666666555

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.43  E-value=0.003  Score=37.51  Aligned_cols=26  Identities=27%  Similarity=0.355  Sum_probs=23.9

Q ss_pred             ccCCCCcccCCCCCccCChhhhhhhhccccCCc
Q 007898          135 VCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEK  167 (585)
Q Consensus       135 ~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgek  167 (585)
                      +|+.|       .|.|..+..|+.|-|.|+|||
T Consensus         2 qcp~c-------~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTC-------HKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTT-------CCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcch-------HHHHHHhHhhhhccccccCCC
Confidence            68888       499999999999999999986

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.28  E-value=0.0066  Score=36.71  Aligned_cols=21  Identities=19%  Similarity=0.543  Sum_probs=11.0

Q ss_pred             cceecC-CCCccCChHHHHHHH
Q 007898          194 REYRCD-CGTLFSRRDSFITHR  214 (585)
Q Consensus       194 kpy~C~-Cgk~F~~~s~L~~H~  214 (585)
                      +||+|. |...-+..+.|..|.
T Consensus         2 rpfkcqlcsy~srnssqltvhl   23 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHL   23 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHH
T ss_pred             CcceeeecccccCCchheEEee
Confidence            455555 555555555555555

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=94.82  E-value=0.0055  Score=38.23  Aligned_cols=20  Identities=45%  Similarity=1.002  Sum_probs=10.6

Q ss_pred             ceecC-CCCccCChHHHHHHH
Q 007898          195 EYRCD-CGTLFSRRDSFITHR  214 (585)
Q Consensus       195 py~C~-Cgk~F~~~s~L~~H~  214 (585)
                      ||.|. |++.|.+++-|.+|.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~   21 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHA   21 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHH
T ss_pred             CcccccccchhhHHHHHHHHH
Confidence            45555 555555555555554

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=94.71  E-value=0.011  Score=36.92  Aligned_cols=26  Identities=12%  Similarity=0.410  Sum_probs=23.5

Q ss_pred             cccccccCCcccChhHHHHHHHH-hCC
Q 007898          168 KWKCDKCSKRYAVQSDWKAHSKT-CGT  193 (585)
Q Consensus       168 py~C~~CgK~F~~~s~L~~H~r~-hge  193 (585)
                      ||.|.+|++.|.++.-|.+|... |+.
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            79999999999999999999887 753

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.69  E-value=0.0037  Score=41.43  Aligned_cols=27  Identities=26%  Similarity=0.603  Sum_probs=25.2

Q ss_pred             cCcccccccCcccccccccchhccccc
Q 007898           90 TNRFVCEICNKGFQRDQNLQLHRRGHN  116 (585)
Q Consensus        90 ~kpy~C~~Cgk~F~~~~~L~~H~r~H~  116 (585)
                      .+.|+|.+|+|.|.+...|--|++.|.
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~Hr   29 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNVHR   29 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHTTC
T ss_pred             CCccCCCCCCCccCCcccccchHhhhc
Confidence            467999999999999999999999996

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.68  E-value=0.0053  Score=37.43  Aligned_cols=30  Identities=27%  Similarity=0.615  Sum_probs=20.2

Q ss_pred             cccccCCCCcccCCCCCccCChhhhhhhhccccCC
Q 007898          132 KVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGE  166 (585)
Q Consensus       132 k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htge  166 (585)
                      |||.|.+-||     +|.|.....|.+|..+|+||
T Consensus         1 ~pfpc~~egc-----~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGC-----EKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSC-----CCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccc-----cccchhhhhhhhhhccccCC
Confidence            4666666655     67777777777777777664

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.0099  Score=36.13  Aligned_cols=22  Identities=23%  Similarity=0.609  Sum_probs=20.4

Q ss_pred             ceecC-CCCccCChHHHHHHHHH
Q 007898          195 EYRCD-CGTLFSRRDSFITHRAF  216 (585)
Q Consensus       195 py~C~-Cgk~F~~~s~L~~H~~~  216 (585)
                      ||.|. |...|..+.+|.+|++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            79999 99999999999999953

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.42  E-value=0.015  Score=35.28  Aligned_cols=22  Identities=32%  Similarity=0.578  Sum_probs=12.4

Q ss_pred             ccccccCCcccChhHHHHHHHH
Q 007898          169 WKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       169 y~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      |.|++||......+-|+.|+|.
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRs   23 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRT   23 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHH
T ss_pred             ccccccCcccCCHHHHHHHHHH
Confidence            4555555555555555555555

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.014  Score=35.49  Aligned_cols=26  Identities=15%  Similarity=0.415  Sum_probs=23.3

Q ss_pred             cceecC-CCCccCChHHHHHHHHHhhh
Q 007898          194 REYRCD-CGTLFSRRDSFITHRAFCDA  219 (585)
Q Consensus       194 kpy~C~-Cgk~F~~~s~L~~H~~~h~~  219 (585)
                      +||+|+ |...-.+.++|.+|++..|+
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            699999 99999999999999877664

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.31  E-value=0.0066  Score=36.82  Aligned_cols=26  Identities=23%  Similarity=0.524  Sum_probs=16.3

Q ss_pred             ccccCCCCcccCCCCCccCChhhhhhhhccc
Q 007898          133 VYVCPEPNCVHHDPSRALGDLTGIKKHFCRK  163 (585)
Q Consensus       133 ~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~H  163 (585)
                      ||+|+.-||     ++.|...+.|++|.++|
T Consensus         3 py~c~hegc-----dk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGC-----DKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTC-----CCEESSHHHHHHHHHHH
T ss_pred             CccCCccCc-----cccccCHHHHhhhhhcc
Confidence            566665554     56666666666666655

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.27  E-value=0.013  Score=34.97  Aligned_cols=21  Identities=29%  Similarity=0.665  Sum_probs=10.5

Q ss_pred             cccccccCCcccChhHHHHHH
Q 007898          168 KWKCDKCSKRYAVQSDWKAHS  188 (585)
Q Consensus       168 py~C~~CgK~F~~~s~L~~H~  188 (585)
                      ||+|..|||.|-++.+|..|.
T Consensus         1 pf~c~kcgkcyfrkenllehe   21 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHE   21 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHH
Confidence            344555555555555555543

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.00  E-value=0.015  Score=35.31  Aligned_cols=25  Identities=24%  Similarity=0.501  Sum_probs=16.3

Q ss_pred             CcceecC-CCCccCChHHHHHHHHHh
Q 007898          193 TREYRCD-CGTLFSRRDSFITHRAFC  217 (585)
Q Consensus       193 ekpy~C~-Cgk~F~~~s~L~~H~~~h  217 (585)
                      |..|.|. |...|+++-.|+-|+-.|
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvsh   27 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSH   27 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHH
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecc
Confidence            3456777 777777777777776443

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.94  E-value=0.018  Score=35.10  Aligned_cols=26  Identities=19%  Similarity=0.410  Sum_probs=23.2

Q ss_pred             cceecC-CCCccCChHHHHHHHHHhhh
Q 007898          194 REYRCD-CGTLFSRRDSFITHRAFCDA  219 (585)
Q Consensus       194 kpy~C~-Cgk~F~~~s~L~~H~~~h~~  219 (585)
                      |||.|. |...-...++|+.|+++.|.
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccccccccccccchhhhhhhhcccc
Confidence            699999 99999999999999987654

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.79  E-value=0.012  Score=36.70  Aligned_cols=28  Identities=29%  Similarity=0.568  Sum_probs=13.6

Q ss_pred             cccccCCCCcccCCCCCccCChhhhhhhh-cccc
Q 007898          132 KVYVCPEPNCVHHDPSRALGDLTGIKKHF-CRKH  164 (585)
Q Consensus       132 k~y~C~~CgC~~~~~~k~F~~~~~L~~H~-r~Ht  164 (585)
                      |||.|.+-||     .|+|...++-.+|. |+|.
T Consensus         1 kPY~C~~~gC-----~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGC-----SKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTC-----CCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCCh-----hhhhcchhhhhhhcccccc
Confidence            3455555443     35555555555553 4443

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.76  E-value=0.022  Score=33.97  Aligned_cols=21  Identities=29%  Similarity=0.940  Sum_probs=19.4

Q ss_pred             ceecC-CCCccCChHHHHHHHH
Q 007898          195 EYRCD-CGTLFSRRDSFITHRA  215 (585)
Q Consensus       195 py~C~-Cgk~F~~~s~L~~H~~  215 (585)
                      ||+|. |||.|-++.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            79999 9999999999999974

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.61  E-value=0.018  Score=33.52  Aligned_cols=21  Identities=29%  Similarity=0.812  Sum_probs=10.5

Q ss_pred             cccccccCCcccChhHHHHHH
Q 007898          168 KWKCDKCSKRYAVQSDWKAHS  188 (585)
Q Consensus       168 py~C~~CgK~F~~~s~L~~H~  188 (585)
                      ||+|..|...|..+.+|..|+
T Consensus         2 pykcsscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHH
Confidence            345555555555555555444

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.61  E-value=0.0083  Score=37.39  Aligned_cols=21  Identities=29%  Similarity=0.743  Sum_probs=14.6

Q ss_pred             cceecC---CCCccCChHHHHHHH
Q 007898          194 REYRCD---CGTLFSRRDSFITHR  214 (585)
Q Consensus       194 kpy~C~---Cgk~F~~~s~L~~H~  214 (585)
                      |||.|+   |.|.|+..+.-.+|+
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHq   24 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQ   24 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHH
T ss_pred             CCccccCCChhhhhcchhhhhhhc
Confidence            567775   777777777666775

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.49  E-value=0.023  Score=34.52  Aligned_cols=25  Identities=16%  Similarity=0.446  Sum_probs=16.3

Q ss_pred             cceecC---CCCccCChHHHHHHHHHhh
Q 007898          194 REYRCD---CGTLFSRRDSFITHRAFCD  218 (585)
Q Consensus       194 kpy~C~---Cgk~F~~~s~L~~H~~~h~  218 (585)
                      |||.|.   |.|.|.....|.+|...|.
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~tht   28 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHT   28 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHH
T ss_pred             CCcCcccccccccchhhhhhhhhhcccc
Confidence            466664   7777777777777765544

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.46  E-value=0.02  Score=37.61  Aligned_cols=26  Identities=19%  Similarity=0.598  Sum_probs=18.9

Q ss_pred             Cccccccc--cCCcccChhHHHHHHHHh
Q 007898          166 EKKWKCDK--CSKRYAVQSDWKAHSKTC  191 (585)
Q Consensus       166 ekpy~C~~--CgK~F~~~s~L~~H~r~h  191 (585)
                      +|||.|..  |+.+|.+..+|..|++.|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            67777744  778888888887777654

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.43  E-value=0.022  Score=33.21  Aligned_cols=21  Identities=24%  Similarity=0.765  Sum_probs=19.6

Q ss_pred             ceecC-CCCccCChHHHHHHHH
Q 007898          195 EYRCD-CGTLFSRRDSFITHRA  215 (585)
Q Consensus       195 py~C~-Cgk~F~~~s~L~~H~~  215 (585)
                      ||+|. |...|..+..|..|+-
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            89999 9999999999999973

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=0.021  Score=36.37  Aligned_cols=25  Identities=32%  Similarity=0.905  Sum_probs=19.7

Q ss_pred             ceecC-CCCccCChHHHHHHHHHhhh
Q 007898          195 EYRCD-CGTLFSRRDSFITHRAFCDA  219 (585)
Q Consensus       195 py~C~-Cgk~F~~~s~L~~H~~~h~~  219 (585)
                      .|.|. |+|+|.++..+.+|-..|.+
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            47888 88888888888888766654

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.32  E-value=0.018  Score=36.97  Aligned_cols=33  Identities=27%  Similarity=0.414  Sum_probs=24.5

Q ss_pred             cccccCCCCcccCCCCCccCChhhhhhhhccccCC
Q 007898          132 KVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGE  166 (585)
Q Consensus       132 k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htge  166 (585)
                      |.|.|.+=||.  ..++.|..+..|..|+|+|+||
T Consensus         1 k~y~C~W~~C~--R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           1 KEFVCHWGGCS--RELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             SCCCCCBTTCT--TTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCeEEECCCCC--CCCCcchhHHHHHHHHhhcCCC
Confidence            35777766652  2246788999999999999986

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.20  E-value=0.015  Score=35.23  Aligned_cols=19  Identities=16%  Similarity=0.342  Sum_probs=10.3

Q ss_pred             CccCChhhhhhhhccccCC
Q 007898          148 RALGDLTGIKKHFCRKHGE  166 (585)
Q Consensus       148 k~F~~~~~L~~H~r~Htge  166 (585)
                      ..|.++-.|+.||..|+||
T Consensus        12 e~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3          12 ETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CEESSHHHHHHHHHHHSSS
T ss_pred             HHHHHHHhheeeeecccCC
Confidence            5555555555555555543

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.49  E-value=0.035  Score=32.40  Aligned_cols=22  Identities=27%  Similarity=0.611  Sum_probs=11.9

Q ss_pred             ccccccCCcccChhHHHHHHHH
Q 007898          169 WKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       169 y~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      |.|++|-|.|.++.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            4455555555555555555554

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.37  E-value=0.027  Score=37.16  Aligned_cols=24  Identities=13%  Similarity=0.469  Sum_probs=12.4

Q ss_pred             cccccccCCcccChhHHHHHHHHh
Q 007898          168 KWKCDKCSKRYAVQSDWKAHSKTC  191 (585)
Q Consensus       168 py~C~~CgK~F~~~s~L~~H~r~h  191 (585)
                      .|+|.+|+|.|.+...|--|++.|
T Consensus         5 ~~~C~~C~k~F~s~qALGGH~~~H   28 (37)
T d1njqa_           5 SYTCSFCKREFRSAQALGGHMNVH   28 (37)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHTT
T ss_pred             ccCCCCCCCccCCcccccchHhhh
Confidence            355555555555555555555443

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=91.01  E-value=0.08  Score=30.86  Aligned_cols=23  Identities=30%  Similarity=0.700  Sum_probs=20.7

Q ss_pred             eecC-CCCccCChHHHHHHHHHhh
Q 007898          196 YRCD-CGTLFSRRDSFITHRAFCD  218 (585)
Q Consensus       196 y~C~-Cgk~F~~~s~L~~H~~~h~  218 (585)
                      |.|+ |-|.|.+++++..|.++-|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            8899 9999999999999987644

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.62  E-value=0.066  Score=31.96  Aligned_cols=22  Identities=27%  Similarity=0.588  Sum_probs=15.1

Q ss_pred             ccccccCCcccChhHHHHHHHH
Q 007898          169 WKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       169 y~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      |.|+.|+-...++++|..|++.
T Consensus         3 ~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           3 FHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHHH
T ss_pred             ccCCcchhheeehhhhhHHhhh
Confidence            5677777777777777777665

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.13  E-value=0.076  Score=33.69  Aligned_cols=23  Identities=22%  Similarity=0.635  Sum_probs=20.4

Q ss_pred             cccccccCCcccChhHHHHHHHH
Q 007898          168 KWKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       168 py~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      .|.|..|||.|.++..+.+|-..
T Consensus         4 afvcskcgktftrrntm~rha~n   26 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADN   26 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHH
T ss_pred             eeeecccccchhcchHHHHHhhh
Confidence            48899999999999999999776

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.56  E-value=0.11  Score=35.59  Aligned_cols=25  Identities=20%  Similarity=0.500  Sum_probs=15.4

Q ss_pred             ccccccCCcccChhHHHHHHHHhCC
Q 007898          169 WKCDKCSKRYAVQSDWKAHSKTCGT  193 (585)
Q Consensus       169 y~C~~CgK~F~~~s~L~~H~r~hge  193 (585)
                      |.|..|||.|.....|+.|..-||.
T Consensus         7 ~pCG~CgK~Ftd~~rLr~HEAQHG~   31 (53)
T d2eppa1           7 LPCGLCGKVFTDANRLRQHEAQHGV   31 (53)
T ss_dssp             CCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             eeccccccccCCHHHHhHhHHhcCc
Confidence            5666666666666666666555543

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.25  E-value=0.15  Score=35.02  Aligned_cols=26  Identities=23%  Similarity=0.530  Sum_probs=22.5

Q ss_pred             cceecC-CCCccCChHHHHHHHHHhhh
Q 007898          194 REYRCD-CGTLFSRRDSFITHRAFCDA  219 (585)
Q Consensus       194 kpy~C~-Cgk~F~~~s~L~~H~~~h~~  219 (585)
                      ..|.|- |+|.|.....|+.|...|-.
T Consensus         5 ~l~pCG~CgK~Ftd~~rLr~HEAQHG~   31 (53)
T d2eppa1           5 GILPCGLCGKVFTDANRLRQHEAQHGV   31 (53)
T ss_dssp             CCCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             ceeeccccccccCCHHHHhHhHHhcCc
Confidence            358899 99999999999999977653

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=85.81  E-value=0.29  Score=28.92  Aligned_cols=22  Identities=27%  Similarity=0.735  Sum_probs=16.4

Q ss_pred             eecC---CCCccCChHHHHHHHHHh
Q 007898          196 YRCD---CGTLFSRRDSFITHRAFC  217 (585)
Q Consensus       196 y~C~---Cgk~F~~~s~L~~H~~~h  217 (585)
                      |.|.   |+|.|.....|+.|+-.|
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~h   26 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFSH   26 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeecc
Confidence            6674   888888888888887554

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.16  E-value=0.21  Score=29.87  Aligned_cols=23  Identities=17%  Similarity=0.138  Sum_probs=14.6

Q ss_pred             cccCCCCcccCCCCCccCChhhhhhhhccc
Q 007898          134 YVCPEPNCVHHDPSRALGDLTGIKKHFCRK  163 (585)
Q Consensus       134 y~C~~CgC~~~~~~k~F~~~~~L~~H~r~H  163 (585)
                      -+|++|       ++....+..|+.|.|+|
T Consensus         3 ekc~ec-------syscsskaalrvh~rih   25 (28)
T d1x5wa1           3 EKCSEC-------SYSCSSKAALRIHERIH   25 (28)
T ss_dssp             EECSSS-------SCEESSHHHHHHHHGGG
T ss_pred             ccCccc-------ccccCcHHHHHHhhccc
Confidence            356666       36666666666666666

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.72  E-value=0.31  Score=29.33  Aligned_cols=22  Identities=36%  Similarity=0.901  Sum_probs=17.1

Q ss_pred             ecC---CCCccCChHHHHHHHHHhh
Q 007898          197 RCD---CGTLFSRRDSFITHRAFCD  218 (585)
Q Consensus       197 ~C~---Cgk~F~~~s~L~~H~~~h~  218 (585)
                      .|+   |+|.|+.+..|..|++..|
T Consensus         2 ~cdf~gc~kifsnrqylnhh~kyqh   26 (30)
T d2dlka1           2 PCDFPGCGRIFSNRQYLNHHKKYQH   26 (30)
T ss_dssp             ECSSTTTCCEESSHHHHHHHHHHGG
T ss_pred             CCCCCCchhhhccHHHHHhHHHHHH
Confidence            465   8999999888888887643

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=84.49  E-value=0.24  Score=31.40  Aligned_cols=26  Identities=35%  Similarity=0.723  Sum_probs=18.0

Q ss_pred             CCccccccccCCcccChhHHHHHHHH
Q 007898          165 GEKKWKCDKCSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       165 gekpy~C~~CgK~F~~~s~L~~H~r~  190 (585)
                      ++..|+|.+|.+.+...+++-+|-.+
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvt   30 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVT   30 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHH
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHh
Confidence            45567777777777777777777655

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.52  E-value=0.3  Score=29.15  Aligned_cols=24  Identities=21%  Similarity=0.459  Sum_probs=15.7

Q ss_pred             cccccccCCcccChhHHHHHHHHh
Q 007898          168 KWKCDKCSKRYAVQSDWKAHSKTC  191 (585)
Q Consensus       168 py~C~~CgK~F~~~s~L~~H~r~h  191 (585)
                      |-+|..|......+..|+.|.|+|
T Consensus         2 pekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGGG
T ss_pred             CccCcccccccCcHHHHHHhhccc
Confidence            345667777667777777776664

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.74  E-value=0.24  Score=31.58  Aligned_cols=25  Identities=20%  Similarity=0.518  Sum_probs=17.5

Q ss_pred             cceecC---CC---CccCChHHHHHHHHHhh
Q 007898          194 REYRCD---CG---TLFSRRDSFITHRAFCD  218 (585)
Q Consensus       194 kpy~C~---Cg---k~F~~~s~L~~H~~~h~  218 (585)
                      |.|.|.   |.   +.|.-+..|..|++.|.
T Consensus         1 k~y~C~W~~C~R~~~pf~a~YkLv~H~R~HT   31 (33)
T d2glia2           1 KEFVCHWGGCSRELRPFKAQYMLVVHMRRHT   31 (33)
T ss_dssp             SCCCCCBTTCTTTTCCCSSHHHHHHHTHHHH
T ss_pred             CCeEEECCCCCCCCCcchhHHHHHHHHhhcC
Confidence            357775   74   45888888888885554

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=81.77  E-value=0.3  Score=32.07  Aligned_cols=26  Identities=35%  Similarity=0.602  Sum_probs=19.3

Q ss_pred             ccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCC
Q 007898          131 KKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSK  176 (585)
Q Consensus       131 ~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK  176 (585)
                      ++.|.|.+||       .             ++.|+-|-+|++|+.
T Consensus         3 ~~~~~C~vCG-------~-------------i~~g~~P~~CPvCg~   28 (37)
T d1nnqa2           3 KKVYICPICG-------Y-------------TAVDEAPEYCPVCGA   28 (37)
T ss_dssp             SCEEECTTTC-------C-------------EEESCCCSBCTTTCC
T ss_pred             CcEEECCCCC-------C-------------EecCCCCCcCCCCCC
Confidence            4678899997       2             445677788999875

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.68  E-value=0.47  Score=28.19  Aligned_cols=23  Identities=22%  Similarity=0.567  Sum_probs=20.4

Q ss_pred             ceecC-CCCccCChHHHHHHHHHh
Q 007898          195 EYRCD-CGTLFSRRDSFITHRAFC  217 (585)
Q Consensus       195 py~C~-Cgk~F~~~s~L~~H~~~h  217 (585)
                      .|.|+ |+....+++.|+.|++.-
T Consensus         2 k~qcphc~tiiarksdlrvhlrnl   25 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQ   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHT
T ss_pred             CccCCcchhheeehhhhhHHhhhc
Confidence            48999 999999999999998643

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=80.69  E-value=0.69  Score=27.86  Aligned_cols=22  Identities=23%  Similarity=0.705  Sum_probs=16.7

Q ss_pred             cceecC---CCCccCChHHHHHHHH
Q 007898          194 REYRCD---CGTLFSRRDSFITHRA  215 (585)
Q Consensus       194 kpy~C~---Cgk~F~~~s~L~~H~~  215 (585)
                      |.|.|+   |.-+|..+..+++|-.
T Consensus         1 knf~cdsd~cdl~fttkanmkkhfn   25 (31)
T d1tf3a3           1 KNFTCDSDGCDLRFTTKANMKKHFN   25 (31)
T ss_dssp             CCEECSSSSCCCEESSHHHHHHHHH
T ss_pred             CCccccCCCcceEEeehHHHHHHHh
Confidence            457786   8888888888888864

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=80.33  E-value=0.48  Score=27.92  Aligned_cols=22  Identities=23%  Similarity=0.584  Sum_probs=14.4

Q ss_pred             ccccc--cCCcccChhHHHHHHHH
Q 007898          169 WKCDK--CSKRYAVQSDWKAHSKT  190 (585)
Q Consensus       169 y~C~~--CgK~F~~~s~L~~H~r~  190 (585)
                      |.|.+  |+|.|.....|+.|+-+
T Consensus         2 yvchfe~c~kafkkhnqlkvhqf~   25 (28)
T d2j7ja1           2 YVCHFENCGKAFKKHNQLKVHQFS   25 (28)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHH
T ss_pred             eEEEecCchHHHhhccceEEEeec
Confidence            45544  77777777777777654

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=80.04  E-value=0.38  Score=31.37  Aligned_cols=27  Identities=30%  Similarity=0.497  Sum_probs=20.1

Q ss_pred             cccccccCCCCcccCCCCCccCChhhhhhhhccccCCccccccccCC
Q 007898          130 RKKVYVCPEPNCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSK  176 (585)
Q Consensus       130 ~~k~y~C~~CgC~~~~~~k~F~~~~~L~~H~r~Htgekpy~C~~CgK  176 (585)
                      .++.|.|.+||       .             +|.|+-|-+|++|+.
T Consensus         2 ~~~~~vC~vCG-------y-------------i~~g~~Pe~CPvCg~   28 (36)
T d1yuza2           2 DDKFHLCPICG-------Y-------------IHKGEDFEKCPICFR   28 (36)
T ss_dssp             SCCEEECSSSC-------C-------------EEESSCCSBCTTTCC
T ss_pred             CCCEEECCCCC-------C-------------EeeCCCCCcCCCCCC
Confidence            45678899997       2             455677788999985