Query 007900
Match_columns 585
No_of_seqs 143 out of 405
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 13:16:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007900.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007900hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 5.3E-28 1.8E-32 216.8 13.2 119 349-470 4-127 (130)
2 4i1k_A B3 domain-containing tr 99.6 1.6E-15 5.4E-20 139.0 10.7 98 355-460 45-143 (146)
3 1yel_A AT1G16640; CESG, protei 99.4 6.9E-13 2.4E-17 113.8 10.1 93 356-458 8-100 (104)
4 1na6_A Ecorii, restriction end 90.3 0.32 1.1E-05 51.7 5.8 91 356-446 18-123 (404)
5 3o27_A Putative uncharacterize 62.2 8.4 0.00029 32.0 4.2 41 419-459 23-63 (68)
6 3lqh_A Histone-lysine N-methyl 57.5 4.8 0.00016 38.3 2.3 56 58-120 4-65 (183)
7 2lo3_A SAGA-associated factor 41.1 9.5 0.00032 29.3 1.2 16 77-92 13-28 (44)
8 2k75_A Uncharacterized protein 39.6 41 0.0014 28.7 5.2 49 394-463 40-91 (106)
9 2vb2_X Copper protein, cation 37.3 23 0.00077 29.9 3.1 23 432-454 59-81 (88)
10 2qcp_X Cation efflux system pr 36.7 24 0.00081 29.2 3.1 24 431-454 50-73 (80)
11 3mhs_E SAGA-associated factor 26.6 17 0.00058 31.9 0.6 13 79-91 73-85 (96)
12 4dok_A Similarity to chalcone- 25.8 48 0.0017 31.9 3.7 38 424-461 127-164 (208)
13 3e0e_A Replication protein A; 23.8 1.1E+02 0.0037 25.6 5.0 33 394-443 40-72 (97)
14 2l55_A SILB,silver efflux prot 23.3 57 0.0019 27.1 3.2 27 432-458 45-73 (82)
15 1mvf_D MAZE protein, PEMI-like 22.9 62 0.0021 26.1 3.3 28 427-456 19-46 (82)
16 2k50_A Replication factor A re 21.6 2.1E+02 0.0072 23.9 6.5 51 394-459 45-99 (115)
17 2kbn_A Conserved protein; nucl 20.4 1.9E+02 0.0065 24.6 6.0 72 355-462 17-91 (109)
18 3ngh_A PDZ domain-containing p 20.2 96 0.0033 25.1 3.9 49 395-444 4-53 (106)
19 2fe0_A SMP-1, small myristoyla 20.0 75 0.0026 29.2 3.5 65 387-458 34-98 (136)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.95 E-value=5.3e-28 Score=216.80 Aligned_cols=119 Identities=38% Similarity=0.717 Sum_probs=100.5
Q ss_pred CCCCCcccceEEEecccccCCCCCcEEeehhhhcccCCCCCC---CCCceEEEEeCCCCeEEEEEEEcCCCCCcceecc-
Q 007900 349 GDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQ---PEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLE- 424 (585)
Q Consensus 349 ~d~ns~~~~LF~KvLT~SDVg~lgRLVIPKk~AE~~FP~L~~---~eG~~L~v~D~~Gk~W~FRfrywpNn~SR~YVL~- 424 (585)
+..+.+..++|+|+||+|||++.+||+||+++|++|||.++. .+++.|.++|.+|++|+|+|+|| +.+++|+|+
T Consensus 4 ~~~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~--~~~~~~~Lt~ 81 (130)
T 1wid_A 4 GSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYW--NSSQSYVLTK 81 (130)
T ss_dssp ----CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEE--TTTTEEEEES
T ss_pred CCCCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEE--CCCCceEEcC
Confidence 445566788999999999999889999999999999999874 57899999999999999999999 567788885
Q ss_pred CchhhhhccCCCCCCEEEEEEec-CCCeEEEEEEeCCCCcCccchhh
Q 007900 425 GVTPCIQNMQLQAGDIVTFSRLE-PEGKLVMGFRKASSASASDQDNE 470 (585)
Q Consensus 425 GWs~FVRsK~LqaGDtVvF~R~e-p~GkL~IGVRRa~~~~~s~q~~~ 470 (585)
||..||++|+|++||+|+|++.+ .+++|+|++||+.... ++|++.
T Consensus 82 GW~~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~-~~~~~~ 127 (130)
T 1wid_A 82 GWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD-LDASGP 127 (130)
T ss_dssp SHHHHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS-SCC---
T ss_pred ChHHHHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC-ccccCC
Confidence 99999999999999999999986 3468999999998654 455543
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.61 E-value=1.6e-15 Score=138.98 Aligned_cols=98 Identities=24% Similarity=0.290 Sum_probs=83.3
Q ss_pred ccceEEEecccccCCCCCcEEeehhhhcccCCCCCCCCCceEEEEeCCCCeEEEEEEEcCCCCCcceeccCchhhhhccC
Q 007900 355 ITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQ 434 (585)
Q Consensus 355 ~~~LF~KvLT~SDVg~lgRLVIPKk~AE~~FP~L~~~eG~~L~v~D~~Gk~W~FRfrywpNn~SR~YVL~GWs~FVRsK~ 434 (585)
-.+.|.|+||+|||.+..+|.||++.++.|||.. ...+.++|. |+.|.+++.|+. +++++..||..||++++
T Consensus 45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~----~~~i~L~~~-gk~W~v~~~~~~---~~~~ls~GW~~Fv~dn~ 116 (146)
T 4i1k_A 45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGI----SGFIKVQLA-EKQWPVRCLYKA---GRAKFSQGWYEFTLENN 116 (146)
T ss_dssp SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTC----CSEEEEEET-TEEEEEEEEEET---TEEEECTTHHHHHHHTT
T ss_pred CCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCC----CeEEEEEEC-CcEEEEEEEEeC---CcEEECCchHHHHHHcC
Confidence 3579999999999997678999999999999973 468888998 699999999983 35566679999999999
Q ss_pred CCCCCEEEEEEecCCC-eEEEEEEeCC
Q 007900 435 LQAGDIVTFSRLEPEG-KLVMGFRKAS 460 (585)
Q Consensus 435 LqaGDtVvF~R~ep~G-kL~IGVRRa~ 460 (585)
|++||+|+|...+... .|.|.+-|+.
T Consensus 117 L~~GD~cvFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 117 LGEGDVCVFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp CCTTCEEEEEECSSSSCEEEEEEECCC
T ss_pred CCCCCEEEEEEecCCceEEEEEEEecc
Confidence 9999999999986433 6888887764
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.41 E-value=6.9e-13 Score=113.81 Aligned_cols=93 Identities=14% Similarity=0.282 Sum_probs=75.7
Q ss_pred cceEEEecccccCCCCCcEEeehhhhcccCCCCCCCCCceEEEEeCCCCeEEEEEEEcCCCCCcceeccCchhhhhccCC
Q 007900 356 TPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQL 435 (585)
Q Consensus 356 ~~LF~KvLT~SDVg~lgRLVIPKk~AE~~FP~L~~~eG~~L~v~D~~Gk~W~FRfrywpNn~SR~YVL~GWs~FVRsK~L 435 (585)
.+.|.|+|+++|. ..+|.||++.++.+.+.+ +..+.++|..|+.|.+++.++. .+.++..||.+||++++|
T Consensus 8 ~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~----~~~v~L~~~~G~~W~v~~~~~~---~~~~l~~GW~~Fv~~~~L 78 (104)
T 1yel_A 8 EVQFMKPFISEKS--SKSLEIPLGFNEYFPAPF----PITVDLLDYSGRSWTVRMKKRG---EKVFLTVGWENFVKDNNL 78 (104)
T ss_dssp CEEEEEECCHHHH--TTCEECCHHHHTTCCCCC----CSEEEEEETTSCEEEEEEEEET---TEEEECTTHHHHHHHHTC
T ss_pred CCCEEEEECCCCc--cceEECCHHHHHhcCccC----CCEEEEECCCCCEEEEEEEEEC---CcEEEccChHHHHHHcCC
Confidence 3689999999994 469999999997766543 4689999999999999999872 344555699999999999
Q ss_pred CCCCEEEEEEecCCCeEEEEEEe
Q 007900 436 QAGDIVTFSRLEPEGKLVMGFRK 458 (585)
Q Consensus 436 qaGDtVvF~R~ep~GkL~IGVRR 458 (585)
++||.|+|.... +..+.|-+=+
T Consensus 79 ~~GD~lvF~~~~-~~~f~V~If~ 100 (104)
T 1yel_A 79 EDGKYLQFIYDR-DRTFYVIIYG 100 (104)
T ss_dssp CTTCEEEEEECS-SSEEEEEEEC
T ss_pred CCCCEEEEEEcC-CCeEEEEEEC
Confidence 999999998864 6677766544
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=90.26 E-value=0.32 Score=51.66 Aligned_cols=91 Identities=16% Similarity=0.167 Sum_probs=64.9
Q ss_pred cceEEEecccccCCC----CCcEEeehhhhcccCCCCCCC---C-CceEE--EEeCCCCeEEEEEEEcCC----CCCcce
Q 007900 356 TPLFEKMLSASDAGR----IGRLVLPKKCAEAYFPPISQP---E-GLPLK--VQDSKGKEWIFQFRFWPN----NNSRMY 421 (585)
Q Consensus 356 ~~LF~KvLT~SDVg~----lgRLVIPKk~AE~~FP~L~~~---e-G~~L~--v~D~~Gk~W~FRfrywpN----n~SR~Y 421 (585)
...|.|.|++.|++. ...+.+||...+.+||.|+.. + -+.+. +-|...-.+.++++|+-| ..+..|
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnEy 97 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEK 97 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCEE
T ss_pred chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCce
Confidence 478999999999995 368999997688999988722 2 22333 334434455999999831 234468
Q ss_pred eccCch-hhhhccCCCCCCEEEEEEe
Q 007900 422 VLEGVT-PCIQNMQLQAGDIVTFSRL 446 (585)
Q Consensus 422 VL~GWs-~FVRsK~LqaGDtVvF~R~ 446 (585)
-++.|. .+.=.....+||.++|-+.
T Consensus 98 RLt~~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 98 RITRWGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEECCCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEeecCCCCcccccCCCCCEEEEEEe
Confidence 888875 4556678899999988765
No 5
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=62.23 E-value=8.4 Score=31.99 Aligned_cols=41 Identities=10% Similarity=0.313 Sum_probs=33.7
Q ss_pred cceeccCchhhhhccCCCCCCEEEEEEecCCCeEEEEEEeC
Q 007900 419 RMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKA 459 (585)
Q Consensus 419 R~YVL~GWs~FVRsK~LqaGDtVvF~R~ep~GkL~IGVRRa 459 (585)
..|.++==.+++++.+++.||.+...=++.+|++++.++|-
T Consensus 23 etyYInIPaeI~kaLgIk~gD~fel~ve~kdgeIvLcykRV 63 (68)
T 3o27_A 23 TTFYLLIPKDIAEALDIKPDDTFILNMEQKDGDIVLSYKRV 63 (68)
T ss_dssp CCEEEEECHHHHHHTTCCTTCCEEEEEEEETTEEEEEEEEC
T ss_pred eEEEEeCcHHHHHHhCCCCCCEEEEEEecCCCeEEEEehhh
Confidence 34555544699999999999999988776799999999983
No 6
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=57.55 E-value=4.8 Score=38.27 Aligned_cols=56 Identities=20% Similarity=0.605 Sum_probs=44.1
Q ss_pred hh-ccccccccccccccccCCCCCccccccCCCcceechhhh-hhhhhhhh----cCCcceeccccccc
Q 007900 58 LC-VYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITS-VHAFTLLD----AGGIECMTCARKNV 120 (585)
Q Consensus 58 LC-~CgsayE~~~FCe~FH~~~sGWR~C~~C~KrlHCGCIaS-~~~~~lLD----~GGv~C~~Car~s~ 120 (585)
.| .|+..|..+.| ++-|-.|..|..-.|-.|+-- ...+++++ ...-.|..|.++..
T Consensus 4 ~CpiC~k~Y~~~~~-------~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 4 FCPLCDKCYDDDDY-------ESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp BCTTTCCBCTTCCT-------TCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCCCCcCccCCccc-------CCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 58 78888888765 577999999999999999843 34467774 34779999998764
No 7
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=41.09 E-value=9.5 Score=29.27 Aligned_cols=16 Identities=38% Similarity=0.910 Sum_probs=13.2
Q ss_pred CCCCccccccCCCcce
Q 007900 77 NASGWRCCESCGKRVH 92 (585)
Q Consensus 77 ~~sGWR~C~~C~KrlH 92 (585)
...-+|.|++|||+|-
T Consensus 13 ~~~~YRvC~~CgkPi~ 28 (44)
T 2lo3_A 13 KPIQYRVCEKCGKPLA 28 (44)
T ss_dssp CCCCEEECTTTCCEEE
T ss_pred ccccchhhcccCCcch
Confidence 4567899999999873
No 8
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=39.62 E-value=41 Score=28.67 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=35.2
Q ss_pred ceEEEEeCCCCeEEEEEEEcCCCCCcceeccCchhhhhccCCCCCCEEEEEEe---cCCCeEEEEEEeCCCCc
Q 007900 394 LPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRL---EPEGKLVMGFRKASSAS 463 (585)
Q Consensus 394 ~~L~v~D~~Gk~W~FRfrywpNn~SR~YVL~GWs~FVRsK~LqaGDtVvF~R~---ep~GkL~IGVRRa~~~~ 463 (585)
..+.+.|.+| ..+++.| +.. |++||+|.+... .-+|++.+.+-|.....
T Consensus 40 ~~~~l~DeTG---~I~~tlW--~~~----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~~I~ 91 (106)
T 2k75_A 40 YQGYIEDDTA---RIRISSF--GKQ----------------LQDSDVVRIDNARVAQFNGYLSLSVGDSSRIE 91 (106)
T ss_dssp EEEEEECSSC---EEEEEEE--SSC----------------CCTTEEEEEEEEEEEEETTEEEEEECTTSEEE
T ss_pred EEEEEEcCCC---eEEEEEE--cCc----------------cCCCCEEEEEeeEEeEECCEEEEEECCcEEEE
Confidence 4789999999 6899999 222 999999999732 24676666666654433
No 9
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=37.27 E-value=23 Score=29.88 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=17.8
Q ss_pred ccCCCCCCEEEEEEecCCCeEEE
Q 007900 432 NMQLQAGDIVTFSRLEPEGKLVM 454 (585)
Q Consensus 432 sK~LqaGDtVvF~R~ep~GkL~I 454 (585)
-.+|++||.|.|.-.+.+|.|.|
T Consensus 59 l~~lk~Gd~V~F~~~~~~~~~~i 81 (88)
T 2vb2_X 59 MSEIKTGDKVAFNFVQQGNLSLL 81 (88)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEE
Confidence 57899999999977665666654
No 10
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=36.70 E-value=24 Score=29.19 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=18.0
Q ss_pred hccCCCCCCEEEEEEecCCCeEEE
Q 007900 431 QNMQLQAGDIVTFSRLEPEGKLVM 454 (585)
Q Consensus 431 RsK~LqaGDtVvF~R~ep~GkL~I 454 (585)
.-.+|++||.|.|.-.+.+|.|.|
T Consensus 50 ~l~~lk~Gd~V~F~~~~~~~~~~i 73 (80)
T 2qcp_X 50 KMSEIKTGDKVAFNFVQQGNLSLL 73 (80)
T ss_dssp EECCCCTTCEEEEEEEEETTEEEE
T ss_pred hhhcCCCCCEEEEEEEEeCCEEEE
Confidence 357899999999977655666654
No 11
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=26.61 E-value=17 Score=31.92 Aligned_cols=13 Identities=46% Similarity=1.112 Sum_probs=11.7
Q ss_pred CCccccccCCCcc
Q 007900 79 SGWRCCESCGKRV 91 (585)
Q Consensus 79 sGWR~C~~C~Krl 91 (585)
.-.|-|+.|||+|
T Consensus 73 ~~YRvCn~CGkPI 85 (96)
T 3mhs_E 73 IQYRVCEKCGKPL 85 (96)
T ss_dssp CCCEEETTTCCEE
T ss_pred ccchhhhccCCce
Confidence 5689999999997
No 12
>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana}
Probab=25.76 E-value=48 Score=31.89 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=30.8
Q ss_pred cCchhhhhccCCCCCCEEEEEEecCCCeEEEEEEeCCC
Q 007900 424 EGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASS 461 (585)
Q Consensus 424 ~GWs~FVRsK~LqaGDtVvF~R~ep~GkL~IGVRRa~~ 461 (585)
....++.+++.|+.||+|.|.+..+.|.|.|.+.+...
T Consensus 127 ~~f~~~F~~~~~~~G~~I~~~~~p~~G~L~i~~s~~G~ 164 (208)
T 4dok_A 127 EKVVGFFQSKYFKANSVITYHFSAKDGICEIGFETEGK 164 (208)
T ss_dssp HHHHHHHHTCEECTTCEEEEEECSSSCCEEEEEECTTS
T ss_pred HHHHHHhccCCCCCCCEEEEEEeCCCCeEEEEEEeCCE
Confidence 35567778889999999999998656999999886543
No 13
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=23.85 E-value=1.1e+02 Score=25.56 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=25.0
Q ss_pred ceEEEEeCCCCeEEEEEEEcCCCCCcceeccCchhhhhccCCCCCCEEEE
Q 007900 394 LPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTF 443 (585)
Q Consensus 394 ~~L~v~D~~Gk~W~FRfrywpNn~SR~YVL~GWs~FVRsK~LqaGDtVvF 443 (585)
..+.+.|.+| ..+++.| .+.+.. .|++||+|.|
T Consensus 40 ~~~~l~DeTG---~I~~tlW-------------~~~~~~-~i~~Gdvv~i 72 (97)
T 3e0e_A 40 KSLFLKDDTG---SIRGTLW-------------NELADF-EVKKGDIAEV 72 (97)
T ss_dssp EEEEEEETTE---EEEEEEE-------------GGGGGC-CCCTTCEEEE
T ss_pred EEEEEECCCC---cEEEEEE-------------CCcccc-ccCCCCEEEE
Confidence 4688999998 6777777 233333 8999999999
No 14
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=23.25 E-value=57 Score=27.12 Aligned_cols=27 Identities=26% Similarity=0.178 Sum_probs=18.6
Q ss_pred ccCCCCCCEEEEEEecCCC-eEEE-EEEe
Q 007900 432 NMQLQAGDIVTFSRLEPEG-KLVM-GFRK 458 (585)
Q Consensus 432 sK~LqaGDtVvF~R~ep~G-kL~I-GVRR 458 (585)
-.+|++||.|.|.-...+| .|.| .+++
T Consensus 45 l~~lk~Gd~V~F~~~~~~~g~~~it~i~~ 73 (82)
T 2l55_A 45 PQGLKAGDRVAFSFRLDPHGMATLVTVAP 73 (82)
T ss_dssp CSSCSTTCEEEEEEEEETTTEEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEECCCCeEEEEEEEe
Confidence 4789999999987655444 6655 4444
No 15
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=22.88 E-value=62 Score=26.08 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=22.5
Q ss_pred hhhhhccCCCCCCEEEEEEecCCCeEEEEE
Q 007900 427 TPCIQNMQLQAGDIVTFSRLEPEGKLVMGF 456 (585)
Q Consensus 427 s~FVRsK~LqaGDtVvF~R~ep~GkL~IGV 456 (585)
.++++..+|.+||.|.|... +|.++|.-
T Consensus 19 k~~~~~lgl~~gd~v~i~~~--~~~iii~p 46 (82)
T 1mvf_D 19 ATLMQALNLNIDDEVKIDLV--DGKLIIEP 46 (82)
T ss_dssp HHHHHHTTCCTTCBEEEEEE--TTEEEEEE
T ss_pred HHHHHHcCCCCCCEEEEEEE--CCEEEEEE
Confidence 47899999999999999874 66677643
No 16
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=21.58 E-value=2.1e+02 Score=23.85 Aligned_cols=51 Identities=14% Similarity=0.301 Sum_probs=34.1
Q ss_pred ceEEEEeCCCCeEEEEEEEcCCCCCcceeccCchhhhhccCCCCCCEEEEEEec----CCCeEEEEEEeC
Q 007900 394 LPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLE----PEGKLVMGFRKA 459 (585)
Q Consensus 394 ~~L~v~D~~Gk~W~FRfrywpNn~SR~YVL~GWs~FVRsK~LqaGDtVvF~R~e----p~GkL~IGVRRa 459 (585)
..+.+.|.+| ..++++| +... | ....|++||+|.|.-.. -+|.+-+.+-+.
T Consensus 45 ~~~~l~D~TG---~I~~t~w--~~~~------~----~~~~l~~G~vv~i~g~~v~~~f~g~~qL~~~~~ 99 (115)
T 2k50_A 45 ANVIIADDTG---ELRAVFW--TENI------K----LLKKFREGDVIRIKDVNIRGGFGGRKEAHLMPR 99 (115)
T ss_dssp EEEEEEETTE---EEEEEEE--TTGG------G----GGGTCCTTSEEEEEEEEECCCSSSSCEEEECTT
T ss_pred EEEEEEeCCC---eEEEEEe--Cchh------h----hhhcCCCCCEEEEEeeEEccccCCeEEEEECCC
Confidence 6789999999 8889999 2221 1 12469999999997643 345554444443
No 17
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=20.41 E-value=1.9e+02 Score=24.58 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=47.1
Q ss_pred ccceEEEecccccCCCCCcEEeehhhhcccCCCCCCCCCceEEEEeCCCCeEEEEEEEcCCCCCcceeccCchhhhhccC
Q 007900 355 ITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQ 434 (585)
Q Consensus 355 ~~~LF~KvLT~SDVg~lgRLVIPKk~AE~~FP~L~~~eG~~L~v~D~~Gk~W~FRfrywpNn~SR~YVL~GWs~FVRsK~ 434 (585)
...++.|+++..+..+ ....+.+.+-|.+| +.+++.| +.. ....
T Consensus 17 ~v~v~~~V~~~~~~~~-------------------~~~~~~~~l~DeTG---~I~~t~W--~~~------------~~~~ 60 (109)
T 2kbn_A 17 WANLKAKVIQLWENTH-------------------ESISQVGLLGDETG---IIKFTIW--KNA------------ELPL 60 (109)
T ss_dssp EEEEEEEEEEEEECCC-------------------SSEEEEEEEECTTC---CEEEEEE--GGG------------CCCC
T ss_pred cEEEEEEEEEeEcCCC-------------------CeEEEEEEEECCCC---eEEEEEE--Ccc------------cccc
Confidence 4567777777765321 11235689999999 5888898 211 2358
Q ss_pred CCCCCEEEEEE---ecCCCeEEEEEEeCCCC
Q 007900 435 LQAGDIVTFSR---LEPEGKLVMGFRKASSA 462 (585)
Q Consensus 435 LqaGDtVvF~R---~ep~GkL~IGVRRa~~~ 462 (585)
|++||+|.+.- ..-+|++-+.+-+....
T Consensus 61 ~~~G~~V~i~n~~v~~~~G~~~L~v~~~~~I 91 (109)
T 2kbn_A 61 LEQGESYLLRSVVVGEYNDRFQVQVNKNSSI 91 (109)
T ss_dssp CCTTCEEEEEEEEEEEETTEEEEEECSSSEE
T ss_pred cCCCCEEEEEEEEEEEECCEEEEEECCceEE
Confidence 99999999862 34678766666665433
No 18
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=20.22 E-value=96 Score=25.12 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=30.1
Q ss_pred eEEEEeCCCCeEEEEEEEcCCCCCcceecc-CchhhhhccCCCCCCEEEEE
Q 007900 395 PLKVQDSKGKEWIFQFRFWPNNNSRMYVLE-GVTPCIQNMQLQAGDIVTFS 444 (585)
Q Consensus 395 ~L~v~D~~Gk~W~FRfrywpNn~SR~YVL~-GWs~FVRsK~LqaGDtVvF~ 444 (585)
.+.+....|..|-|....-+ .....++.. -...-+...+|++||.|+=.
T Consensus 4 ~v~l~~~~~~~~G~~l~~~~-~~~g~~V~~V~~~spA~~aGl~~GD~I~~i 53 (106)
T 3ngh_A 4 ESKLSKQEGQNYGFFLRIEK-DTDGHLIRVIEEGSPAEKAGLLDGDRVLRI 53 (106)
T ss_dssp EEEEECCTTCCCCCEEECCT-TCCSCEEECCCTTSHHHHTTCCTTCEEEEE
T ss_pred EEEEEeCCCCeeCEEEEEEe-CCCCEEEEEeCCCCHHHHcCCCCCCEEEEE
Confidence 34555556677777766542 223445544 33455667789999998754
No 19
>2fe0_A SMP-1, small myristoylated protein 1; beta sheet, protein transport, membrane protein; NMR {Leishmania major} SCOP: b.134.1.1
Probab=20.02 E-value=75 Score=29.16 Aligned_cols=65 Identities=15% Similarity=0.339 Sum_probs=43.9
Q ss_pred CCCCCCCceEEEEeCCCCeEEEEEEEcCCCCCcceeccCchhhhhccCCCCCCEEEEEEecCCCeEEEEEEe
Q 007900 387 PISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRK 458 (585)
Q Consensus 387 ~L~~~eG~~L~v~D~~Gk~W~FRfrywpNn~SR~YVL~GWs~FVRsK~LqaGDtVvF~R~ep~GkL~IGVRR 458 (585)
-++..+|+..++.|..++.|-|- |+...|.+.=--.|-..-.++++......+. ++|.+.+.+--
T Consensus 34 cF~~~nGlLfRIv~~~~~~WaFY------NDT~~y~mhV~~~F~~~S~v~alg~t~l~~~-~~G~~~a~vvV 98 (136)
T 2fe0_A 34 GFEKDNGLLFRIVNKKKKQWAYY------NDTTQYEMHVLVTFNEDCDIKALGKTKLEQQ-ENGEWVASVVV 98 (136)
T ss_dssp SSSSTTCSEEEEEETTTTEEEEE------ECCSSEEEEEEEEEESSCCEEECTTCEEEEC-TTSEEEEEEEE
T ss_pred cccCCCcEEEEEEecCCCEEEEE------eCCccEEEEEEEEECCCCceEECCceEEEEC-CCCCEEEEEEE
Confidence 33344699999999988999873 6666666654445666667777766666553 57776665553
Done!