BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007901
(585 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O08781|ZMAT3_RAT Zinc finger matrin-type protein 3 OS=Rattus norvegicus GN=Zmat3
PE=2 SV=1
Length = 289
Score = 39.7 bits (91), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 81/212 (38%), Gaps = 41/212 (19%)
Query: 185 WCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKCIAGQQNIQMPNSGSQPEVSQ 244
+C+LC V N+ + + H GK H + LR + N C + + + P V
Sbjct: 71 FCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYA---ANSCPPPARMSSVAEPVATPLVPV 127
Query: 245 PEKVEECRE--KQPLESLPSQTLLGNASNET--------------------EMQKNTV-D 281
P +V C+ + L + L +AS + E Q ++ D
Sbjct: 128 PPQVGSCKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAEAQSHSFSD 187
Query: 282 SVKEPQRKSRDQPDSRGCGSKRKMRGGRGGKYMRTNEGGP------RRPIEPPKPKGVIP 335
S + QR++R + GS+ KM R Y + GP R+ I V P
Sbjct: 188 SAEAGQRRTRKE------GSEFKMVTTRRNMYTVQSNSGPYFNARSRQRIPRDLAMCVTP 241
Query: 336 ---LICELCNVKCESQVVFDSHLVGKKHLANV 364
C +CNV +V F HL K+H + V
Sbjct: 242 SGQFYCSMCNVGAGEEVEFRQHLESKQHKSKV 273
>sp|Q8BXJ8|Z385B_MOUSE Zinc finger protein 385B OS=Mus musculus GN=Znf385b PE=2 SV=1
Length = 482
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 159 AVPGQTSSSIPGQVPGAPTRPPPPMAWCELCRVDCNTLEILEQHKNGKRHK 209
A P ++++ PG V + + +C LC+V N+L LE H G +HK
Sbjct: 272 ASPSKSTNGAPGSVAESEEEKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHK 322
>sp|Q6DJ13|ZN830_XENTR Zinc finger protein 830 OS=Xenopus tropicalis GN=znf830 PE=2 SV=1
Length = 357
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 26/37 (70%)
Query: 336 LICELCNVKCESQVVFDSHLVGKKHLANVKRFHGHRA 372
L+C +CN++ +S++++ +H++GK+H V G +A
Sbjct: 45 LLCVVCNIQIKSELLWPAHILGKQHKEKVAELKGSKA 81
>sp|Q569K4|Z385B_HUMAN Zinc finger protein 385B OS=Homo sapiens GN=ZNF385B PE=2 SV=1
Length = 471
Score = 38.1 bits (87), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 157 SAAVPGQTSSSIPGQVPGAPTRPPPPMAWCELCRVDCNTLEILEQHKNGKRHK 209
+A P ++++ PG V + + +C LC+V N+L LE H G +HK
Sbjct: 258 AATSPSKSTNGAPGTVVESEEEKAKKLLYCSLCKVAVNSLSQLEAHNTGSKHK 310
>sp|Q96PM9|Z385A_HUMAN Zinc finger protein 385A OS=Homo sapiens GN=ZNF385A PE=2 SV=1
Length = 366
Score = 37.0 bits (84), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 183 MAWCELCRVDCNTLEILEQHKNGKRHKRNLRTHADL 218
+ +C LC+V N+L LE H G +HK L + L
Sbjct: 180 LLYCALCKVAVNSLSQLEAHNKGTKHKTILEARSGL 215
Score = 32.7 bits (73), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 320 GPRRPIEPPKPKGVIPLICELCNVKCESQVVFDSHLVGKKHLANV 364
GP P EP P CE+CNVK S+V H+ ++H V
Sbjct: 225 GPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHISSRRHRDGV 269
>sp|Q6PBT9|Z385B_DANRE Zinc finger protein 385B OS=Danio rerio GN=znf385b PE=2 SV=1
Length = 492
Score = 35.8 bits (81), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 183 MAWCELCRVDCNTLEILEQHKNGKRHKRNL 212
+ +C LC+V N+L LE H G +HK L
Sbjct: 305 LLYCSLCKVAVNSLSQLEAHNTGSKHKTML 334
>sp|O59811|YJVF_SCHPO Zinc finger protein C550.15c OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPCC550.15c PE=1 SV=1
Length = 463
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 338 CELCNVKCESQVVFDSHLVGKKHLANVKRF 367
CE+CN K S+ + SH+ KKH N+ +F
Sbjct: 72 CEVCNKKFYSEGAYSSHMASKKHRDNLSKF 101
>sp|Q197D9|VF193_IIV3 Putative apoptosis inhibitor 021L OS=Invertebrate iridescent virus
3 GN=IIV3-021L PE=3 SV=1
Length = 206
Score = 33.5 bits (75), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 13/87 (14%)
Query: 149 GAISNSTPSAAVPGQTSSSIPGQVPGAPTRPPPPMAWCELCRVDCNTLEILEQHKNGKRH 208
G I NST + V Q S +P +P P CE C T KN +
Sbjct: 89 GTIKNSTSKSPVSNQPSPEEDEPIPDLTLKPLEPCTKCE-----CTTC-----MKNSIKQ 138
Query: 209 KRNLRTHADLQNLNK---CIAGQQNIQ 232
+ NL+ H ++ NL C+ Q N++
Sbjct: 139 EENLKVHQNILNLESKIMCVVCQANVR 165
>sp|Q0VD35|ZMAT4_BOVIN Zinc finger matrin-type protein 4 OS=Bos taurus GN=ZMAT4 PE=2 SV=1
Length = 229
Score = 33.1 bits (74), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 307 GGRGGKYMRTNEGGPRRPIEPPKPKGVIPLICELCNVKCESQVVFDSHLVGKKHLANVKR 366
GG K +R+ G ++ K C LCN+ S VV DSH GK H +K
Sbjct: 53 GGCPAKRLRSENGNDADMVDKNK-------CCTLCNMSFTSAVVADSHYQGKIHAKRLKL 105
Query: 367 FHGHRALYGEAA--LQSLYP 384
G + A L SL P
Sbjct: 106 LLGEKTPLKTTATPLSSLKP 125
>sp|O54836|ZMAT3_MOUSE Zinc finger matrin-type protein 3 OS=Mus musculus GN=Zmat3 PE=2
SV=1
Length = 290
Score = 32.7 bits (73), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 79/207 (38%), Gaps = 30/207 (14%)
Query: 185 WCELCRVDCNTLEILEQHKNGKRHKRNLRTHADLQNLNKC-IAGQQNIQMPNSGSQPEVS 243
+C+LC V N+ + + H GK H + LR + N C + + + + P V
Sbjct: 71 FCKLCNVTLNSAQQAQAHYQGKNHGKKLRNYYA---ANSCPPPARVSSVVAEPVATPLVP 127
Query: 244 QPEKVEECRE--KQPLESLPSQTLLGNASNETEMQ-------KNTVDSVKEPQRKSRDQP 294
P +V C+ + L + L +AS + KN ++ + +S
Sbjct: 128 VPPQVGSCKPGGRVILATENDYCKLCDASFSSPAVAQAHYQGKNHAKRLRLAEAQSHSFS 187
Query: 295 DSRGCGSKRKMRGGRGGKYMRT--------NEGGP------RRPIEPPKPKGVIP---LI 337
DS G +R + G K + T + GP R+ I V P
Sbjct: 188 DSAEAGQRRTRKEGSEFKMVATRRNMNPVQSNSGPYFNARSRQRIPRDLAMCVTPSGQFY 247
Query: 338 CELCNVKCESQVVFDSHLVGKKHLANV 364
C +CNV +V F HL K+H + V
Sbjct: 248 CSMCNVGAGEEVEFRQHLESKQHKSKV 274
>sp|Q9UPR6|ZFR2_HUMAN Zinc finger RNA-binding protein 2 OS=Homo sapiens GN=ZFR2 PE=2 SV=3
Length = 939
Score = 32.7 bits (73), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 186 CELCRVDCNTLEILEQHKNGKRHKRNLRTHADL 218
C+LC V C + H G +H++ + HA L
Sbjct: 321 CDLCAVSCTGADAYAAHIRGSKHQKVFKLHAKL 353
>sp|Q6PR54|RIF1_MOUSE Telomere-associated protein RIF1 OS=Mus musculus GN=Rif1 PE=1 SV=2
Length = 2419
Score = 32.7 bits (73), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 432 EQLRGLAAQIPGLVGMVAPAPAPGSSQETQYQHDFRTQRSMAT---TEEGSKNTVMVEAE 488
E L+ IP L + +SQ+T + F + SM + TE+ ++ +++ E
Sbjct: 1067 EVLKTKRCDIPALYNNL------DASQDTLFSAQFSQEESMESLTLTEKPKEDAKIIKEE 1120
Query: 489 DQQQSIATDLESPETVGIETKEKNASLP 516
+ +I ++PE GI+ +NASLP
Sbjct: 1121 QMESTIFIHQDAPENCGIDEHSENASLP 1148
>sp|P28167|ZFH2_DROME Zinc finger protein 2 OS=Drosophila melanogaster GN=zfh2 PE=1 SV=2
Length = 3005
Score = 32.3 bits (72), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 17/110 (15%)
Query: 147 GHGAIS-NSTPSAAVPGQTSSSIPGQVPGAPTRPPPPMAWCELCRVDCNTLEILEQHKNG 205
G ++S N+TPS ++++ A T+P P C++C D + L H
Sbjct: 695 GTASLSGNATPSVTGANSSNANAGSNTNNAGTKPKPSF-RCDICSYDTSVARNLRIHMTS 753
Query: 206 KRHKRNLRTHADLQNLNKCI-----------AGQQNIQMPNSGS-QPEVS 243
++H N+ A LQN K I +G NI +SGS PEV+
Sbjct: 754 EKHTHNM---AVLQNNIKHIQAFNFLQQQQQSGTGNIASHSSGSFMPEVA 800
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.128 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 236,594,777
Number of Sequences: 539616
Number of extensions: 10976405
Number of successful extensions: 58408
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 398
Number of HSP's that attempted gapping in prelim test: 49826
Number of HSP's gapped (non-prelim): 6288
length of query: 585
length of database: 191,569,459
effective HSP length: 123
effective length of query: 462
effective length of database: 125,196,691
effective search space: 57840871242
effective search space used: 57840871242
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)