Query 007902
Match_columns 585
No_of_seqs 185 out of 353
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 16:52:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007902.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007902hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1901 Uncharacterized high-g 100.0 7.4E-69 1.6E-73 570.8 32.6 416 93-582 3-425 (487)
2 PF04146 YTH: YT521-B-like dom 100.0 2.1E-45 4.6E-50 337.6 8.5 124 455-584 1-128 (140)
3 KOG1902 Putative signal transd 100.0 2E-40 4.4E-45 339.3 7.7 136 442-585 60-200 (441)
4 PRK00809 hypothetical protein; 92.5 0.31 6.7E-06 46.3 6.3 93 457-559 2-108 (144)
5 PF01878 EVE: EVE domain; Int 66.2 10 0.00022 34.9 4.8 97 457-560 1-111 (143)
6 PF03875 Statherin: Statherin; 43.0 24 0.00052 27.5 2.5 27 129-166 15-41 (42)
7 PRK02268 hypothetical protein; 38.6 59 0.0013 31.4 5.0 91 457-559 3-100 (141)
8 PF08683 CAMSAP_CKK: Microtubu 19.0 2.8E+02 0.006 26.3 5.6 56 464-522 12-67 (123)
9 KOG0921 Dosage compensation co 11.8 1.9E+03 0.042 27.9 11.2 27 319-347 1191-1217(1282)
10 cd05840 SPBC215_ISWI_like The 10.5 2.7E+02 0.0058 24.8 3.0 31 461-496 61-91 (93)
No 1
>KOG1901 consensus Uncharacterized high-glucose-regulated protein [General function prediction only]
Probab=100.00 E-value=7.4e-69 Score=570.78 Aligned_cols=416 Identities=42% Similarity=0.628 Sum_probs=286.7
Q ss_pred CCCCCCcccccccCCCCccCccccCCCCccee-ccCCCC--CCCCCCCCCCCCCCcCCCCCccccCCCCCCC-CCCCCCC
Q 007902 93 NVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMY-HHGYGY--APYPPYSPATSPVPTMGTDGQLYGPQHYQYP-HYFQPIT 168 (585)
Q Consensus 93 ~~~eW~~y~~Yvn~dg~e~~~~vy~dn~Sl~y-~~Gygy--~pYg~Ysp~~sP~p~~g~DgQlyg~Q~y~yp-~yyq~~~ 168 (585)
.+.+ ++|+-|.|.|++.+. ++.+.+.+++. ...+++ .||.|+++ .++++|.|++++.+|++.+. ++|-
T Consensus 3 ~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~~~~~~~~~--- 74 (487)
T KOG1901|consen 3 SGLY-TDYGVVSNSESVQPD-GGQGQESANTSYPTSLGYHSFPYNPSSY---AASSLGSDGSLGEPQQNPLYSPSYG--- 74 (487)
T ss_pred CCCc-CCccccccCcccccC-CccCCCcccccCCccccccCCCCCCCcc---cccCCCCCccccccccccccCCCcC---
Confidence 4556 899999999994333 55555555544 333343 23444433 34588999999999999997 5554
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCCCCcccccCCCCCCcccCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 007902 169 PTSSPYSPSPVAPTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSLPGRGPA 248 (585)
Q Consensus 169 ~~~~~y~~~~~~~~q~e~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~~~~~~~~~~p~~~~~~~~gsyg~g~~~~~~p~ 248 (585)
+...|+........++++....... ...+..+.. . +.+..|... ..+.++ ..-+.+.|.
T Consensus 75 ~~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------------~--~~~~~p~~~---~~~~~~-~~~~~~~~~ 133 (487)
T KOG1901|consen 75 PVSLPTASTSGSSTFSNLTLRKAPG---FSSSGPKQG------------G--SMPSDPRGS---AQRNSS-ISASPGYPP 133 (487)
T ss_pred cccCccccccCcccccchhhhcccc---ccccccccC------------c--CCCCCCccc---cccccc-ccCCCCCCC
Confidence 2222333333333344443322221 111111111 0 122222222 111111 122223444
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCcccccccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q 007902 249 SGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRNQNYRPNSHYMGLHHPRPMSGMG-AAQGFM 327 (585)
Q Consensus 249 sgy~~~~~~~~g~~~~~~w~d~~~~s~~~~~~~~~~sss~~~~~~~~~~~nq~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 327 (585)
.+|.+|++.++..... +..++..+.+++.+....+.+.++ ...+|.
T Consensus 134 ~~~~~P~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 180 (487)
T KOG1901|consen 134 LPYSAPKFASDLIPGK---------------------------------PPPPISGNTGPPTPDSKGPVSSSGHNAQGYY 180 (487)
T ss_pred cccCCCccccccccCC---------------------------------CCCCccccCCCCCcccCCcccCCcccccccc
Confidence 5777777666641100 112222233333333334443332 345666
Q ss_pred ccCcCCC-CcccCcCCCccccCCCCCCCCCCCCCCCccccccCCccccCCCCCCccCCCCC-CcccccccccCCCCCCCC
Q 007902 328 NMNRMYP-NKLYGQYGNTFRSGVGFGSNGYDLRTNGRGWLSVDGKYKSRGRGNGYFGYGNE-NMDGLNELNRGPRAKGAK 405 (585)
Q Consensus 328 ~~~~~yp-~~~y~~~g~~~~~~~~~g~~~~~~~~~~r~w~~~~~k~~~~~~~~~~~~~~~~-~~~~~~e~nrgpr~~~~~ 405 (585)
+.++. .+.|+.+..+...+..|+...+.....+|+|..+++..+..+. .......++ ..+.++|+|||||+...+
T Consensus 181 --~~~~~~~~~~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~nrg~~s~~~~ 257 (487)
T KOG1901|consen 181 --DQFSSQPGLYGSYQPTGGSGPPYGQSLYANQPKGRSPYGVDNSRPTWGI-NYPRLPSDEAGSDSLNEQNRGPRSSDSR 257 (487)
T ss_pred --cccccCcccccCccccCCCCCccCcccccccccCCCCcccCCCcccccc-cCCCccccccccccccccccCccccccc
Confidence 45555 3456556655566788999999988999999999975554442 222223333 378899999999999999
Q ss_pred CCCCCCCCcccccccccccCCCCcccCCcccCCCCCcCCCCCCCCCCCCCceEEEEecCChhHHHHHhhcCeeecCCchh
Q 007902 406 NQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGN 485 (585)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qyN~~~f~~~~~~aRFFVIKS~nedNIhkSIKygVWaTTp~nn 485 (585)
++.........+...+ ..+....++++++||+++|.+.+.++|||||||++|||||+||||+|||+|+++|
T Consensus 258 ~~~~~~~~~~~~~~~s---------~~~~~~~~~~~~~yn~~~f~~~~~nAkfFVIKSySEDdVHkSIKY~vWsST~~GN 328 (487)
T KOG1901|consen 258 GQDINSSGPTEAGSAS---------APESNESVKRRDRYNPPDFLTDYSNAKFFVIKSYSEDDVHKSIKYNVWSSTLNGN 328 (487)
T ss_pred CccccCCcchhccccc---------cccccccccChhhcCccccccccccceEEEEeccChhhhhhhcccceeecccCCc
Confidence 8876554333333211 1122256889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCEEEEEEECCCCCeeEEEEeeCCCCCCCCchhhhcccCCCcceeeEEEeecCCCCcccccccC
Q 007902 486 KKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLE 565 (585)
Q Consensus 486 kKLn~AF~ea~~k~~~~pV~LfFSVN~Sg~FqG~AeM~S~Vdf~k~~~~Wqqdkw~G~F~VeWi~vkdVPf~~l~HI~N~ 565 (585)
||||+|||++++|.++||||||||||+||||||+|||+++|||+++++||+||||.|.|+||||+||||||..|+||+++
T Consensus 329 KkLdaAYreak~~~~~cPvfLfFSVNaSGqFCGvAEMvgPVdfn~~~~~WqQDKW~G~FpVKWhiVKDVPNs~lrHI~Le 408 (487)
T KOG1901|consen 329 KKLDAAYREAKKKSGKCPVFLFFSVNASGQFCGVAEMVGPVDFNKDMEYWQQDKWSGSFPVKWHIVKDVPNSQLRHIILE 408 (487)
T ss_pred hhhHHHHHHhhhccCCCCceEEEEEcCCccccceeeeccceecccccchhhhcccceecceeeEEEeeCCccceeEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCCCCceec
Q 007902 566 NNENKPVTNSRDTQEVI 582 (585)
Q Consensus 566 ~NeNKPVt~SRDGQEIe 582 (585)
+|||||||++||+|||.
T Consensus 409 NNeNKPVTnSRDTQEV~ 425 (487)
T KOG1901|consen 409 NNENKPVTNSRDTQEVP 425 (487)
T ss_pred cCCCCCcccccccceec
Confidence 99999999999999994
No 2
>PF04146 YTH: YT521-B-like domain; InterPro: IPR007275 A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells []. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanaisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B, Q9QY02 from SWISSPROT, is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner []. The domain is predicted to have four alpha helices and six beta strands []. In plant cells environmental stimuli, which light, pathogens, hormones, and abiotic stresses, elicit changes in the cytosolic Ca levels but little is known of the cytosolic-nuclear Ca-signaling pathway; where gene regulation occurs to respond appropriately to the stress. It has been demonstrated that two novel Arabidopsis thaliana (Mouse-ear cress) proteins, (ECT1 and ECT2), specifically associated with Calcineurin B-Like-Interacting Protein Kinase1 (CIPK1), a member of Ser/Thr protein kinases that interact with the calcineurin B-like Ca-binding proteins. These two proteins contain a very similar C-terminal region (180 amino acids in length, 81% similarity), which is required and sufficient for both interaction with CIPK1 and translocation to the nucleus. This domain, the YTH-domain, is conserved across all eukaryotes and suggests that the conserved C-terminal region plays a critical role in relaying the cytosolic Ca-signals to the nucleus, thereby regulating gene expression [].; PDB: 2YUD_A 2YU6_A.
Probab=100.00 E-value=2.1e-45 Score=337.62 Aligned_cols=124 Identities=49% Similarity=0.878 Sum_probs=102.9
Q ss_pred CceEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEECCCCCeeEEEEeeCCCCCCCCchh
Q 007902 455 DAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEY 534 (585)
Q Consensus 455 ~aRFFVIKS~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pV~LfFSVN~Sg~FqG~AeM~S~Vdf~k~~~~ 534 (585)
++|||||||++++||++|+++|||+|+++++++|++||++++ +||||||||+|++|||||+|+++++++....+
T Consensus 1 ~~rfFiiKS~~~~ni~~s~~~gvW~t~~~~~~~L~~Af~~~~------~V~L~FSvn~S~~F~G~A~M~s~~~~~~~~~~ 74 (140)
T PF04146_consen 1 NARFFIIKSFNEENIHLSIKYGVWATQPKNEKKLNEAFKESR------NVYLFFSVNGSGHFQGYARMTSPIDPDSPKPF 74 (140)
T ss_dssp --EEEEEEESSCHHHHHHHHCTEEE--CCCHHHHHHHHHHSS-------EEEEEEETTTSEEEEEEEEECECCSSS----
T ss_pred CcEEEEEEECCHHHHHHHHhCCEEcccccchHHHHHHHHhCC------CEEEEEeecCcceEEEEEEEccCCCCcccCcc
Confidence 589999999999999999999999999999999999999983 89999999999999999999999999988899
Q ss_pred hh----cccCCCcceeeEEEeecCCCCcccccccCCCCCCCcccCCCCceecCC
Q 007902 535 WQ----QDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEVIKF 584 (585)
Q Consensus 535 Wq----qdkw~G~F~VeWi~vkdVPf~~l~HI~N~~NeNKPVt~SRDGQEIe~~ 584 (585)
|. ..+|.|.|+|+||++++|||+.++||+|++||||||+++||||||++.
T Consensus 75 w~~~~~~~~~~g~F~v~Wl~~~~lpf~~~~hl~n~~n~~~pV~~~rDgqEi~~~ 128 (140)
T PF04146_consen 75 WQQDSSSSKWGGPFRVEWLRVKDLPFSKLRHLRNPLNENKPVKISRDGQEIEPE 128 (140)
T ss_dssp --SS-SGCGG-SEEEEEEEE-S-EEHHHHTT-EETTTTTEETTS--TTEEE-CC
T ss_pred ccccccccccCCceEEEEEECCcCChHHhcccccccCCCcEEEECCCCEEeCHH
Confidence 95 369999999999999999999999999999999999999999999974
No 3
>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]
Probab=100.00 E-value=2e-40 Score=339.27 Aligned_cols=136 Identities=36% Similarity=0.608 Sum_probs=126.0
Q ss_pred cCCCCCCCCCCCCCceEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEECCCCCeeEEEE
Q 007902 442 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAE 521 (585)
Q Consensus 442 ~qyN~~~f~~~~~~aRFFVIKS~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pV~LfFSVN~Sg~FqG~Ae 521 (585)
+++++...+. ..+|||||||.|.+||.+|++.|||+|++.|++||+.||++. ..||||||||.||||||||+
T Consensus 60 ~~~~~ss~~~--~~~rYFIiKS~N~eN~elSvqkGiWaTq~sNE~kLn~AF~~s------~~ViLIFSVn~SghFQG~Ar 131 (441)
T KOG1902|consen 60 DQTSKLKYVL--QDARYFIIKSNNHENVELSVQKGVWSTQPSNEKKLNLAFRSS------RSVILIFSVNESGHFQGFAR 131 (441)
T ss_pred hhcccccccC--CceEEEEEecCCccceeeehhcceeccccccHHHHHHHHhhc------CcEEEEEEecccccchhhhh
Confidence 5566655555 689999999999999999999999999999999999999998 48999999999999999999
Q ss_pred eeCCCCCCCCchhhhc-----ccCCCcceeeEEEeecCCCCcccccccCCCCCCCcccCCCCceecCCC
Q 007902 522 MAGPVDFNKNVEYWQQ-----DKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEVIKFL 585 (585)
Q Consensus 522 M~S~Vdf~k~~~~Wqq-----dkw~G~F~VeWi~vkdVPf~~l~HI~N~~NeNKPVt~SRDGQEIe~~~ 585 (585)
|+|+|...+....|.+ ..|++.|+||||++++|||.++.||+|+|||||||+||||||||||.|
T Consensus 132 MsS~IG~~~~q~~W~~~~G~~a~~G~~FkVkWiRl~eLpFqkt~hL~NP~NdnkpVKISRD~QELep~V 200 (441)
T KOG1902|consen 132 MSSEIGHGGSQIHWVLPAGMSAMLGGVFKVKWIRLRELPFQKTAHLTNPWNENKPVKISRDGQELEPEV 200 (441)
T ss_pred hcchhccCCCCccccccCCcccccCceeeEeEEeeccccchhhhhcCCcccccCceeecccccccChhH
Confidence 9999998888777865 679999999999999999999999999999999999999999999864
No 4
>PRK00809 hypothetical protein; Provisional
Probab=92.52 E-value=0.31 Score=46.27 Aligned_cols=93 Identities=11% Similarity=0.219 Sum_probs=62.4
Q ss_pred eEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEEC------CCCCeeEEEEeeCCCCCCC
Q 007902 457 KFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN------TSGQFVGLAEMAGPVDFNK 530 (585)
Q Consensus 457 RFFVIKS~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pV~LfFSVN------~Sg~FqG~AeM~S~Vdf~k 530 (585)
+|+|+=+ |+||+.++.++|||-.....-.-|.+ . .....+||++-+ .-..|.|+|++++..-.+.
T Consensus 2 ~yWi~~~-~~~~~~~~~~~gv~g~~~~~rn~lr~----M----k~GD~v~fYhs~~~~~~~~~~~ivgi~eV~~~~y~D~ 72 (144)
T PRK00809 2 TYWLCIT-NEDNWEVIKDKNVWGVPERYKNTIEK----V----KPGDKLIIYVSQEYGAERLPGKIVGIYEVVSEWYEDS 72 (144)
T ss_pred ceEEEec-CHHHHHHHHhCCEeecchhhhhHHhh----C----CCCCEEEEEECCccCCCCCCceEEEEEEEecCcccCC
Confidence 6777766 99999999999999996532222221 1 234788888887 5799999999998742222
Q ss_pred Cchhhh------cccCCCcceeeEEEeec--CCCCcc
Q 007902 531 NVEYWQ------QDKWTGCFPVKWHIVKD--VPNSLL 559 (585)
Q Consensus 531 ~~~~Wq------qdkw~G~F~VeWi~vkd--VPf~~l 559 (585)
+ .+|. .+.+--..+|+++.+.+ ||.+.|
T Consensus 73 t-~~~p~~~~~~~~~~p~rvdV~~~~~~~~~v~l~~L 108 (144)
T PRK00809 73 T-PIFPAEPVRPKEIYPYRVKLKPVKIFEEPIDFKPL 108 (144)
T ss_pred c-cCCCccccCCCCCceEEEEEEEeeecCCcccHHHH
Confidence 2 2232 12222467899998888 776655
No 5
>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily. The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.
Probab=66.16 E-value=10 Score=34.89 Aligned_cols=97 Identities=14% Similarity=0.245 Sum_probs=50.9
Q ss_pred eEEEEecC----ChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEEC-CCCCeeEEEEeeCCCCCCCC
Q 007902 457 KFFVIKSY----SEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN-TSGQFVGLAEMAGPVDFNKN 531 (585)
Q Consensus 457 RFFVIKS~----nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pV~LfFSVN-~Sg~FqG~AeM~S~Vdf~k~ 531 (585)
+|+|+|+. +-+++ .-.+..+|.-..+...+- .+++.+ ...-+||+.-. ..+.|.|+++.++..-.+..
T Consensus 1 ~YWl~~~~P~~~~~~~~-~~~~~~~~~gv~~~~~~~--~l~~mk----~GD~vifY~s~~~~~~ivai~~V~~~~~~d~~ 73 (143)
T PF01878_consen 1 RYWLLKANPENFSIDDL-EHWGVTVWDGVRNYQARK--NLKRMK----PGDKVIFYHSGCKERGIVAIGEVVSEPYPDPT 73 (143)
T ss_dssp -EEEEEEBTTTSHHHHH-HHHSEEECHTEEEHHHHH--HHHC------TT-EEEEEETSSSS-EEEEEEEEEEEEEE-GG
T ss_pred CEEEEEeCCcccCHHHh-cccceEEEcCEeehhhhh--hhhcCC----CCCEEEEEEcCCCCCEEEEEEEEeccccCCCc
Confidence 68999998 66666 444455555333322222 445442 24566677666 67999999999976421111
Q ss_pred c----hhhhcccC---CCcceeeEEEeec--CCCCccc
Q 007902 532 V----EYWQQDKW---TGCFPVKWHIVKD--VPNSLLK 560 (585)
Q Consensus 532 ~----~~Wqqdkw---~G~F~VeWi~vkd--VPf~~l~ 560 (585)
. +.|...++ ....+|+++.+-+ |+...|+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~pi~l~~Lk 111 (143)
T PF01878_consen 74 AFDPDSPYYDPKSNPKPYRVDVEYVKIFEKPIPLKELK 111 (143)
T ss_dssp GTSTTSTTBTTTSCSSSEEEEEEEEEEEEEEEEHHHHH
T ss_pred cccccccCcCCccCCCeeEEEEEEEEecCCCcCHHHHh
Confidence 1 11222222 2356788886544 4445554
No 6
>PF03875 Statherin: Statherin; InterPro: IPR005575 Statherin functions biologically to inhibit the nucleation and growth of calcium phosphate minerals. The N terminus of statherin is highly charged, the glutamic acids of which have been shown to be important in the recognition hydroxyapatite [].
Probab=43.03 E-value=24 Score=27.49 Aligned_cols=27 Identities=48% Similarity=0.899 Sum_probs=14.6
Q ss_pred CCCCCCCCCCCCCCCCcCCCCCccccCCCCCCCCCCCC
Q 007902 129 GYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQP 166 (585)
Q Consensus 129 gy~pYg~Ysp~~sP~p~~g~DgQlyg~Q~y~yp~yyq~ 166 (585)
+|.-|||| -|+|-- -|| +|.|| |+|||
T Consensus 15 ~~grygpy----qp~peq----~ly-pqpyq--p~yqq 41 (42)
T PF03875_consen 15 FYGRYGPY----QPFPEQ----PLY-PQPYQ--PPYQQ 41 (42)
T ss_pred cccccCCc----CCCCCC----cCC-CCCCC--Ccccc
Confidence 44446777 555542 266 66655 34543
No 7
>PRK02268 hypothetical protein; Provisional
Probab=38.61 E-value=59 Score=31.36 Aligned_cols=91 Identities=9% Similarity=0.181 Sum_probs=54.8
Q ss_pred eEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEEC-------CCCCeeEEEEeeCCCCCC
Q 007902 457 KFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN-------TSGQFVGLAEMAGPVDFN 529 (585)
Q Consensus 457 RFFVIKS~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pV~LfFSVN-------~Sg~FqG~AeM~S~Vdf~ 529 (585)
+|.| =.-|+||+.+.++.|+|-.. |+.+. ..+.- ....-+|++|=. .-+.|.++.++++.--+.
T Consensus 3 ~yWI-~v~s~~hv~~g~~~gf~qv~-hgK~a---pl~Rm----kpGD~ivyYsp~~~~~~~~~~qaftAig~V~~~~~Yq 73 (141)
T PRK02268 3 RYWI-GVVSAEHVRRGVEGGFMQVC-HGKAA---PLRRM----KPGDWIIYYSPKTTFGGKDKLQAFTAIGKVKDDEPYQ 73 (141)
T ss_pred ceEE-EEccHHHHHHHHhCCEEEeC-CCccc---hhhcC----CCCCEEEEEeceEecCCCcccceEEEEEEEcCCceEe
Confidence 4553 35579999999999999774 33321 11111 124677777722 347899999998752221
Q ss_pred CCchhhhcccCCCcceeeEEEeecCCCCcc
Q 007902 530 KNVEYWQQDKWTGCFPVKWHIVKDVPNSLL 559 (585)
Q Consensus 530 k~~~~Wqqdkw~G~F~VeWi~vkdVPf~~l 559 (585)
..+. .+-..=.++|+|+.+.++|++-|
T Consensus 74 ~~m~---~~f~P~Rr~v~~~~~~e~pi~pL 100 (141)
T PRK02268 74 VEMA---PGFIPWRRDVDYYPCAETPIRPL 100 (141)
T ss_pred cccC---CCceeEEEEeeEeecCccchHHh
Confidence 1100 00000135799999999998654
No 8
>PF08683 CAMSAP_CKK: Microtubule-binding calmodulin-regulated spectrin-associated; InterPro: IPR014797 This is the C-terminal domain of a family of eumetazoan proteins collectively defined as calmodulin-regulated spectrin-associated, or CAMSAP, proteins. CAMSAP proteins carry an N-terminal region that includes the CH domain, a central region including a predicted coiled-coil and this C-terminal, or CKK, domain - defined as being present in CAMSAP, KIAA1078 and KIAA1543, The C-terminal domain is the part of the CAMSAP proteins that binds to microtubules. The domain appears to act by producing inhibition of neurite extension, probably by blocking microtubule function. CKK represents a domain that has evolved with the metazoa []. The structure of a murine hypothetical protein from RIKEN cDNA has shown the domain to adopt a mainly beta barrel structure with an associated alpha-helical hairpin. ; PDB: 1UGJ_A.
Probab=19.04 E-value=2.8e+02 Score=26.30 Aligned_cols=56 Identities=25% Similarity=0.376 Sum_probs=41.3
Q ss_pred CChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEECCCCCeeEEEEe
Q 007902 464 YSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEM 522 (585)
Q Consensus 464 ~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pV~LfFSVN~Sg~FqG~AeM 522 (585)
.|..-|+.|+++-+-+ .+.|++..+.+.++. +++...+++++|. ...-+|.|+=.+
T Consensus 12 SNr~iI~nAL~~~~La-G~vN~~~r~~~l~~~-~~s~~~hflILfr-d~~~~fRglY~~ 67 (123)
T PF08683_consen 12 SNRRIIHNALSHCCLA-GPVNEKQRNKALEEM-SKSEANHFLILFR-DAGCQFRGLYSY 67 (123)
T ss_dssp --HHHHHHHHHHTTT--SSTTHHHHHHHHHHH-HHS--S-EEEEES-SSS-SEEEEEEE
T ss_pred ChHHHHHHHHHHhcCC-CccCHHHHHHHHHHH-hhCCCCeEEEEEe-cCCCceEEEEEE
Confidence 3578899999997775 778888889998866 4566668888899 778999999888
No 9
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=11.82 E-value=1.9e+03 Score=27.95 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=13.3
Q ss_pred CCCCCCCCCccCcCCCCcccCcCCCcccc
Q 007902 319 GMGAAQGFMNMNRMYPNKLYGQYGNTFRS 347 (585)
Q Consensus 319 ~~~~~~~~~~~~~~yp~~~y~~~g~~~~~ 347 (585)
|-|.+.||. ..-|-++.|+.-++.++.
T Consensus 1191 gGGYGggys--~gGygsGGYGgsa~~~~~ 1217 (1282)
T KOG0921|consen 1191 GGGYGGGYS--GGGYGSGGYGGSAPSARA 1217 (1282)
T ss_pred CCCcCCCCC--CCCcCCCCCCCCCCCCCC
Confidence 333345555 445555555554444433
No 10
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=10.53 E-value=2.7e+02 Score=24.78 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=25.6
Q ss_pred EecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHH
Q 007902 461 IKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQ 496 (585)
Q Consensus 461 IKS~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~ 496 (585)
|+-+++++|+.-++..- ..++.|.+||+.|.
T Consensus 61 l~pl~~~~~~~~l~~~~-----~k~k~l~~ay~~A~ 91 (93)
T cd05840 61 LKPLTEEKIAKFLKKPK-----RKDKELIKAYKAAK 91 (93)
T ss_pred cccCCHHHHHHHhhcCC-----CCCHHHHHHHHHhc
Confidence 67788999999988544 66799999999884
Done!