Query 007902
Match_columns 585
No_of_seqs 185 out of 353
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 13:19:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007902.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007902hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yu6_A YTH domain-containing p 100.0 4.4E-49 1.5E-53 362.8 10.3 126 452-584 4-129 (141)
2 2yud_A YTH domain-containing p 100.0 4.3E-49 1.5E-53 375.7 6.5 139 437-583 9-153 (180)
3 2hd9_A UPF0310 protein PH1033; 94.8 0.044 1.5E-06 50.3 6.2 95 457-561 2-109 (145)
4 2p5d_A UPF0310 protein mjecl36 91.5 0.25 8.7E-06 45.3 5.8 95 456-560 4-112 (147)
5 2eve_A Hypothetical protein ps 41.8 26 0.00091 33.0 4.6 97 457-561 2-116 (157)
6 3eop_A Thymocyte nuclear prote 26.2 33 0.0011 32.9 2.5 99 457-562 2-128 (176)
7 3goe_A DNA repair protein RAD6 16.6 1E+02 0.0035 26.4 3.3 44 459-508 12-55 (82)
8 3ia2_A Arylesterase; alpha-bet 9.3 97 0.0033 27.7 1.1 30 102-131 2-31 (271)
9 2ar1_A Hypothetical protein; s 9.2 3.9E+02 0.013 25.5 5.1 75 455-536 18-102 (172)
10 1ugj_A Riken cDNA 2310057J16 p 8.9 5.6E+02 0.019 23.6 6.0 59 464-525 18-76 (141)
No 1
>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=4.4e-49 Score=362.77 Aligned_cols=126 Identities=29% Similarity=0.538 Sum_probs=120.5
Q ss_pred CCCCceEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEECCCCCeeEEEEeeCCCCCCCC
Q 007902 452 EYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKN 531 (585)
Q Consensus 452 ~~~~aRFFVIKS~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pV~LfFSVN~Sg~FqG~AeM~S~Vdf~k~ 531 (585)
...++|||||||+++||||+|++||||+||++||+||++||++++ +||||||||+||+|||||||++++|+ ..
T Consensus 4 ~~~~~rfFIiKS~s~~ni~~S~k~gvW~tt~~~~~~L~~Af~~~~------~V~L~FSvn~Sg~F~G~A~M~s~~~~-~~ 76 (141)
T 2yu6_A 4 GSSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESS------IVYLVFSVQGSGHFQGFSRMSSEIGR-EK 76 (141)
T ss_dssp CCCCCEEEEEEESSSHHHHHHHHTCEEECCTTSHHHHHHHHHHSS------CEEEEEEESSSSEECEEEEECSCSSS-CC
T ss_pred CCCCcEEEEEEeCCHHHHHHHHHcCEeeccCccHHHHHHHHhcCC------cEEEEEEECCCCeEEEEEEEcccCCC-CC
Confidence 457899999999999999999999999999999999999999983 99999999999999999999999999 55
Q ss_pred chhhhcccCCCcceeeEEEeecCCCCcccccccCCCCCCCcccCCCCceecCC
Q 007902 532 VEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEVIKF 584 (585)
Q Consensus 532 ~~~Wqqdkw~G~F~VeWi~vkdVPf~~l~HI~N~~NeNKPVt~SRDGQEIe~~ 584 (585)
..+|++++|+|.|+|+||+++||||+.++||+|++||||||+++||||||++.
T Consensus 77 ~~~W~~~~~~g~F~V~Wi~~~~vpf~~~~hl~n~~N~nk~V~~~RDgqEi~~~ 129 (141)
T 2yu6_A 77 SQDWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQ 129 (141)
T ss_dssp CCCCSCSCCCCEEEEEEEECSCEEHHHHTSCEETTSTTEETTCCCTTEEECTT
T ss_pred CccccccccCCcEEEEEEEeecCChHHhhhcccccCCCCeEEeCCCCEEcCHH
Confidence 66799999999999999999999999999999999999999999999999974
No 2
>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=4.3e-49 Score=375.66 Aligned_cols=139 Identities=32% Similarity=0.541 Sum_probs=131.6
Q ss_pred CCCCCcCCCCCCCCCCCCCceEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEECCCCCe
Q 007902 437 LSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQF 516 (585)
Q Consensus 437 ~~~~~~qyN~~~f~~~~~~aRFFVIKS~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pV~LfFSVN~Sg~F 516 (585)
..+++++||+.++.. +++|||||||++++|||+||+||||+||++||+||++||++++ +||||||||+||+|
T Consensus 9 ~~~~~~~~~~~~~~~--~~arfFIIKS~s~~ni~~Sik~gvWatt~~n~~kL~~Af~~~~------~V~L~FSVn~Sg~F 80 (180)
T 2yud_A 9 RAVRKDQTSKLKYVL--QDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSAR------SVILIFSVRESGKF 80 (180)
T ss_dssp CCCCCCSSHHHHHHT--TTCEEEEEEESCHHHHHHHHHHTEECCCHHHHHHHHHHHHHSS------CEEEEEEETTTSEE
T ss_pred hhcchhhcccccccc--CceEEEEEEeCCHHHHHHHHHcCEeecccccHHHHHHHHhhCC------eEEEEEEeCCCCcE
Confidence 466789999988875 7999999999999999999999999999999999999999983 89999999999999
Q ss_pred eEEEEeeCCCCCCCCchhhh------cccCCCcceeeEEEeecCCCCcccccccCCCCCCCcccCCCCceecC
Q 007902 517 VGLAEMAGPVDFNKNVEYWQ------QDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEVIK 583 (585)
Q Consensus 517 qG~AeM~S~Vdf~k~~~~Wq------qdkw~G~F~VeWi~vkdVPf~~l~HI~N~~NeNKPVt~SRDGQEIe~ 583 (585)
||||||+++++++....+|+ +++|+|.|+|+||+++||||..++||+|+|||||||+++||||||++
T Consensus 81 ~G~A~M~s~~~~~~~~~~W~~~~~~~~~~~~g~F~V~Wi~~~dvPf~~~~hl~n~~NenkpV~~sRDgqEI~~ 153 (180)
T 2yud_A 81 QGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIEL 153 (180)
T ss_dssp EEEEEEEEEEECSSCCCCCCCCSSCCGGGGCSEEEEEEEECSCEEHHHHTTCCBTTTTSBCTTSCCTTEEECH
T ss_pred EEEEEEccCCCCCCCCccccccCccchhhcCCceEEEEEEeecCCchhhhhccccccCCCeeeeCCCCEEcCH
Confidence 99999999999988888896 46799999999999999999999999999999999999999999986
No 3
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=94.79 E-value=0.044 Score=50.32 Aligned_cols=95 Identities=9% Similarity=0.196 Sum_probs=62.9
Q ss_pred eEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEECCC--------CCeeEEEEeeCCCCC
Q 007902 457 KFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTS--------GQFVGLAEMAGPVDF 528 (585)
Q Consensus 457 RFFVIKS~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pV~LfFSVN~S--------g~FqG~AeM~S~Vdf 528 (585)
+|.|+|| +.|++...++.|+|-. .+..+..-+ .- .....+||++-+.. ..|.|++|+++..-.
T Consensus 2 ~YWL~ks-s~d~~~~~~~~g~~GV-n~~arn~lr---~m----k~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~ 72 (145)
T 2hd9_A 2 TYWICIT-NRENWEVIKRHNVWGV-PKKHKNTLS---RV----KPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYV 72 (145)
T ss_dssp CEEEEEE-CHHHHHHHHHHCEEEE-CGGGHHHHT---TC----CTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEE
T ss_pred ceEEEeC-CHHHHHHHHHcCcccc-CHHHHHHHH---hC----CCCCEEEEEEccccccCCCCCCceEEEEEEEcCCcEe
Confidence 5899998 8999999999999977 544442222 11 23468888876665 899999999985432
Q ss_pred CCCchhhhcccC-----CCcceeeEEEeecCCCCcccc
Q 007902 529 NKNVEYWQQDKW-----TGCFPVKWHIVKDVPNSLLKH 561 (585)
Q Consensus 529 ~k~~~~Wqqdkw-----~G~F~VeWi~vkdVPf~~l~H 561 (585)
+.+ .+|-..+| -=...|+++.+..|++..+..
T Consensus 73 D~t-~~~~~~~~~~~~~p~rv~v~~v~~~~i~~~~l~~ 109 (145)
T 2hd9_A 73 DFS-RIFKPHRGGKETYPYRVKIKPIKIGEINFKPLIN 109 (145)
T ss_dssp CCC-CCSCCTTSSCCCCCEEEEEEEEEEEEEESGGGGG
T ss_pred CCC-ccCCCcccccCCeeEEEeCEEEeeccCcHHHHHh
Confidence 221 12222111 123568888888998876654
No 4
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=91.52 E-value=0.25 Score=45.34 Aligned_cols=95 Identities=12% Similarity=0.087 Sum_probs=59.7
Q ss_pred ceEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEEC------CCCCeeEEEEeeCCCCCC
Q 007902 456 AKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN------TSGQFVGLAEMAGPVDFN 529 (585)
Q Consensus 456 aRFFVIKS~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pV~LfFSVN------~Sg~FqG~AeM~S~Vdf~ 529 (585)
.+|.|+|+. ++++...++.|+|-. .+..+..-+ .- .....+||+... .-..|.|++|+++..-.+
T Consensus 4 m~YWL~~se-~~~~~~~~~~g~wGV-n~~arn~lr---~M----k~GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e~y~D 74 (147)
T 2p5d_A 4 MAYWLCITN-EDNWKVIKEKKIWGV-AERYKNTIN---KV----KVGDKLIIYEIQRSGKDYKPPYIRGVYEVVSEVYKD 74 (147)
T ss_dssp CCEEEEEEC-HHHHHHHHHHCEEEE-CGGGHHHHT---TC----CTTCEEEEEECCBCSTTCBCCEEEEEEEECSCCEEC
T ss_pred ccceeeecC-HHHHHHHHHcCeeec-CHHHHHHHH---hC----CCCCEEEEEEecccCCCCCCCEEEEEEEEecccccC
Confidence 479999986 677999999999966 443332222 11 234667777332 346899999999854222
Q ss_pred -----CCchhhhc-ccCCCcceeeEEEe--ecCCCCccc
Q 007902 530 -----KNVEYWQQ-DKWTGCFPVKWHIV--KDVPNSLLK 560 (585)
Q Consensus 530 -----k~~~~Wqq-dkw~G~F~VeWi~v--kdVPf~~l~ 560 (585)
....+... .+| -..+|+|+.. ..||...|+
T Consensus 75 ~t~~dp~~~y~~~~~~w-~~VdV~~v~~~~~~v~L~~Lk 112 (147)
T 2p5d_A 75 SSKIFKPTPRNPNEKFP-YRVKLKEIKVFEPPINFKELI 112 (147)
T ss_dssp CCCCSCCBTTBTTCCCC-EEEEEEEEEEEEEEEEHHHHG
T ss_pred CcccCcCccCcCCCCCc-eEEEEEEEeecCCccCHHHHH
Confidence 21111111 122 2678999987 888877666
No 5
>2eve_A Hypothetical protein pspto5229; alpha-beta protein, structural genomics, PSI, protein struct initiative; HET: MPO; 1.60A {Pseudomonas syringae PV} SCOP: b.122.1.8 PDB: 2g2x_A
Probab=41.78 E-value=26 Score=32.99 Aligned_cols=97 Identities=12% Similarity=0.370 Sum_probs=54.8
Q ss_pred eEEEEec----CChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEEC-CCCCeeEEEEeeCC-----C
Q 007902 457 KFFVIKS----YSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN-TSGQFVGLAEMAGP-----V 526 (585)
Q Consensus 457 RFFVIKS----~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pV~LfFSVN-~Sg~FqG~AeM~S~-----V 526 (585)
+|.++|| |+-||+.. .+..+|.=..+-..| .-.|+. ......||+.-| ......|+||++.. .
T Consensus 2 ~YWL~KsEP~~~Siddl~~-~~~~~WdGVRNyqAr--N~mr~M----k~GD~~ffYHS~c~~pgIvGi~eVv~e~ypD~t 74 (157)
T 2eve_A 2 AYWLMKSEPDEFSISDLQR-LGKARWDGVRNYQAR--NFLRTM----AEGDEFFFYHSSCPEPGIAGIGKIVKTAYPDPT 74 (157)
T ss_dssp CEEEEEECTTTSCHHHHHH-HSEEEECCCCCHHHH--HHHHHC----CTTCEEEEEECSSSSCEEEEEEEEEEEEEECGG
T ss_pred ceeeEecCCCeeeHHHHhc-CCcEecCCcccHHHH--HHHHhc----CCCCEEEEEecCCCCCEEEEEEEEeEccCCCcc
Confidence 4788886 66788877 555789755432221 111222 123556666555 88999999999974 2
Q ss_pred CCCCCchhhhc------ccCCCcceeeEEEe--ecCCCCcccc
Q 007902 527 DFNKNVEYWQQ------DKWTGCFPVKWHIV--KDVPNSLLKH 561 (585)
Q Consensus 527 df~k~~~~Wqq------dkw~G~F~VeWi~v--kdVPf~~l~H 561 (585)
.|+....||.. .+|. .+.|+-+.. +-|+...+|.
T Consensus 75 ~fdp~s~YyDpks~~~~prw~-~VdV~~v~~~~~pv~L~elK~ 116 (157)
T 2eve_A 75 ALDPDSHYHDAKATTEKNPWS-ALDIGFVDIFKNVLGLGYLKQ 116 (157)
T ss_dssp GGCTTSTTCCTTCCSSCCCCE-EEEEEEEEEEEEEEEHHHHHT
T ss_pred cccccCcCcCcccCCCCCCEE-EEEEEEeeecCCccCHHHHhc
Confidence 35555566632 2443 455555543 3444444443
No 6
>3eop_A Thymocyte nuclear protein 1; unknown function, nucleus, phosphoprotein; 2.30A {Homo sapiens} SCOP: b.122.1.0
Probab=26.19 E-value=33 Score=32.95 Aligned_cols=99 Identities=19% Similarity=0.339 Sum_probs=57.1
Q ss_pred eEEEEec-------------CChhHHHHH-hhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEE-EECCCCCeeEEEE
Q 007902 457 KFFVIKS-------------YSEDDVHKS-IKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLF-SVNTSGQFVGLAE 521 (585)
Q Consensus 457 RFFVIKS-------------~nedNIhkS-IKygVWaTTp~nnkKLn~AF~ea~~k~~~~pV~LfF-SVN~Sg~FqG~Ae 521 (585)
+|.++|| |+.||+... .+.-.|.=-.+-..|-. .|+. .-+ ...||+ |-...-...|+||
T Consensus 2 ~yWLmKSEP~~r~e~g~dv~fSidDl~~~~~~~~~WdGVRNyqARN~--mR~M---k~G-D~~fFYHSnck~pgIvGi~e 75 (176)
T 3eop_A 2 SHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNF--LRAM---KLG-EEAFFYHSNCKEPGIAGLMK 75 (176)
T ss_dssp CEEEEEEBSSCCBSSSSBCBCCSHHHHTSGGGEEECCCCCCHHHHHH--HHHC---CTT-CEEEEEECCSSSCEEEEEEE
T ss_pred ceeeeeeCCCcccccCccceEeHHHHHhccCCCCcccCcccHHHHHH--HHhc---CCC-CEEEEEecCCCCCeEEEEEE
Confidence 5777886 566777765 34567876554332211 1222 123 445555 5448889999999
Q ss_pred eeCCC--C---CCCCchhhhc------ccCCCcceeeEEEe--ecCCCCccccc
Q 007902 522 MAGPV--D---FNKNVEYWQQ------DKWTGCFPVKWHIV--KDVPNSLLKHI 562 (585)
Q Consensus 522 M~S~V--d---f~k~~~~Wqq------dkw~G~F~VeWi~v--kdVPf~~l~HI 562 (585)
++... | |+....|+.. .||. .+.|+-+.. +-|+...+|..
T Consensus 76 Vv~e~ypD~T~fDp~s~YyDpkS~~~~prW~-~VdV~~v~~~~~~vtL~eLK~~ 128 (176)
T 3eop_A 76 IVKEAYPDHTQFEKNNPHYDPSSKEDNPKWS-MVDVQFVRMMKRFIPLAELKSY 128 (176)
T ss_dssp EEEEEEECGGGTCTTSTTCCTTCCTTSCSCE-EEEEEEEEEEEEEEEHHHHHHH
T ss_pred EeeccccCCcccCCCCCCCCccCcCCCCCEE-EEEEEEeeecCCcccHHHHhcC
Confidence 99742 2 5555566632 3564 566776654 34666666654
No 7
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=16.59 E-value=1e+02 Score=26.36 Aligned_cols=44 Identities=23% Similarity=0.184 Sum_probs=31.4
Q ss_pred EEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEE
Q 007902 459 FVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLF 508 (585)
Q Consensus 459 FVIKS~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pV~LfF 508 (585)
.+++|.-.+|++.+|+- ....++|-+||++++..+....|.|+|
T Consensus 12 ~~~~~~~~~dl~f~I~~------~t~v~kLi~ayc~~~~I~~~~~IrllF 55 (82)
T 3goe_A 12 LLLRSSKSEDLRLSIPV------DFTVKDLIKRYCTEVKISFHERIRLEF 55 (82)
T ss_dssp EEEEESSSCCEEEEEET------TSBHHHHHHHHHHHHTCCCCTTCEEEE
T ss_pred HhhhccCCCCeEEEecC------CCCHHHHHHHHHHHcCCCcCceEEEEE
Confidence 45566655666644443 345689999999999877777899888
No 8
>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A
Probab=9.35 E-value=97 Score=27.73 Aligned_cols=30 Identities=20% Similarity=0.548 Sum_probs=24.0
Q ss_pred ccccCCCCccCccccCCCCcceeccCCCCC
Q 007902 102 RYVSQDGVDMTSGVYGDNGSLMYHHGYGYA 131 (585)
Q Consensus 102 ~Yvn~dg~e~~~~vy~dn~Sl~y~~Gygy~ 131 (585)
.++..||+.|.+..+|+...+|+.||++-.
T Consensus 2 ~~~~~~g~~l~y~~~G~g~~vvllHG~~~~ 31 (271)
T 3ia2_A 2 TFVAKDGTQIYFKDWGSGKPVLFSHGWLLD 31 (271)
T ss_dssp EEECTTSCEEEEEEESSSSEEEEECCTTCC
T ss_pred eEEcCCCCEEEEEccCCCCeEEEECCCCCc
Confidence 467889999888888887789998887653
No 9
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=9.18 E-value=3.9e+02 Score=25.47 Aligned_cols=75 Identities=28% Similarity=0.451 Sum_probs=45.2
Q ss_pred CceEEEEec----CChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEEC-CCCCeeEEEEeeCCC---
Q 007902 455 DAKFFVIKS----YSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN-TSGQFVGLAEMAGPV--- 526 (585)
Q Consensus 455 ~aRFFVIKS----~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pV~LfFSVN-~Sg~FqG~AeM~S~V--- 526 (585)
.-+|.++|| |+.||+.. ....+|.-..+-..+- -.++. ..+ ...||+.-| ....+.|+||++...
T Consensus 18 ~M~YWL~KSEP~~~Siddl~~-~~~~~WdGVRNyqARN--~mr~M---k~G-D~vfFYHS~c~~pgIvGi~eVv~e~ypD 90 (172)
T 2ar1_A 18 DIHYWLLKSEPHKFSIDDLAK-QKTSPWDGVRNYAARN--NMRAM---SVG-DKVLFYHSNTKEPGVAGLAEVVRLAYDD 90 (172)
T ss_dssp SCCEEEEEECTTTSCHHHHHH-HSEEECCCCCCHHHHH--HHHHC---CTT-CEEEEEECSSSSCEEEEEEEEEEEEEEC
T ss_pred ccceEEEEcCCCccCHHHHHh-cCceeccCcCcHHHHH--HHHhc---CCC-CEEEEEecCCCCCEEEEEEEEeeeccCC
Confidence 346999997 56788877 4446797554332211 11222 123 455555444 889999999999742
Q ss_pred --CCCCCchhhh
Q 007902 527 --DFNKNVEYWQ 536 (585)
Q Consensus 527 --df~k~~~~Wq 536 (585)
.|+....||.
T Consensus 91 ~t~fdp~s~YyD 102 (172)
T 2ar1_A 91 FTALDKTSEYFD 102 (172)
T ss_dssp GGGGCTTSTTCC
T ss_pred cccccccCcccC
Confidence 3455556664
No 10
>1ugj_A Riken cDNA 2310057J16 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.41.1.3
Probab=8.86 E-value=5.6e+02 Score=23.58 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=44.6
Q ss_pred CChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEECCCCCeeEEEEeeCC
Q 007902 464 YSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGP 525 (585)
Q Consensus 464 ~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pV~LfFSVN~Sg~FqG~AeM~S~ 525 (585)
.|..-|+.|+++.+- ..+.|++..+++.++.+ ++...+.+|+|--. .-+|.|+=.+...
T Consensus 18 SNr~iI~NAL~~~~L-aG~vN~~~r~~~le~i~-~s~~~hFlILfrd~-~~qfRalY~~~~~ 76 (141)
T 1ugj_A 18 SNKFIIHNALSHCCL-AGKVNEPQKNRILEEIE-KSKANHFLILFRDS-SCQFRALYTLSGE 76 (141)
T ss_dssp CCHHHHHHHHHHTTT-CSSTTHHHHHHHHHHHH-HSCCSCEEEEESSS-SCSEEEEEEECTT
T ss_pred ChHHHHHHHHHHhcC-CCccCHHHHHHHHHHHh-cccCCeEEEEEecC-CCceEEEEEEeCC
Confidence 467889999998666 45678888899988875 55556788888754 3689998887643
Done!