Query 007903
Match_columns 585
No_of_seqs 548 out of 3392
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 16:53:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02825 amino-acid N-acetyltr 100.0 3.9E-92 8.5E-97 768.8 46.9 482 83-576 1-490 (515)
2 TIGR01890 N-Ac-Glu-synth amino 100.0 1.5E-72 3.3E-77 612.2 42.5 404 83-576 1-405 (429)
3 PRK05279 N-acetylglutamate syn 100.0 1.5E-68 3.3E-73 583.1 42.8 410 80-576 6-417 (441)
4 COG0548 ArgB Acetylglutamate k 100.0 3.3E-56 7.1E-61 445.6 30.3 260 98-445 1-265 (265)
5 cd04237 AAK_NAGS-ABP AAK_NAGS- 100.0 3.3E-54 7.1E-59 442.9 30.7 278 82-443 1-280 (280)
6 CHL00202 argB acetylglutamate 100.0 4E-53 8.7E-58 435.9 32.4 274 80-444 4-283 (284)
7 PLN02512 acetylglutamate kinas 100.0 2.1E-50 4.6E-55 419.9 33.5 275 80-444 28-308 (309)
8 PRK00942 acetylglutamate kinas 100.0 7E-49 1.5E-53 404.8 31.4 276 81-446 5-283 (283)
9 cd04250 AAK_NAGK-C AAK_NAGK-C: 100.0 2.1E-47 4.6E-52 393.0 29.9 269 87-443 2-279 (279)
10 KOG2436 Acetylglutamate kinase 100.0 3.3E-47 7.1E-52 400.5 14.0 437 79-535 74-519 (520)
11 PRK04531 acetylglutamate kinas 100.0 2.8E-43 6.1E-48 376.1 32.3 316 75-539 18-336 (398)
12 cd04252 AAK_NAGK-fArgBP AAK_NA 100.0 2.2E-43 4.8E-48 357.0 28.2 243 103-443 2-248 (248)
13 cd04238 AAK_NAGK-like AAK_NAGK 100.0 6.3E-42 1.4E-46 348.2 27.4 253 102-443 1-256 (256)
14 cd04236 AAK_NAGS-Urea AAK_NAGS 100.0 5.4E-42 1.2E-46 348.3 26.1 254 76-443 15-271 (271)
15 PRK14058 acetylglutamate/acety 100.0 6.3E-41 1.4E-45 342.9 28.8 250 101-445 1-267 (268)
16 cd04251 AAK_NAGK-UC AAK_NAGK-U 100.0 1E-40 2.3E-45 339.2 27.1 244 102-443 1-257 (257)
17 cd04249 AAK_NAGK-NC AAK_NAGK-N 100.0 1.1E-40 2.4E-45 338.2 26.9 248 102-443 1-252 (252)
18 PRK12352 putative carbamate ki 100.0 1E-40 2.2E-45 345.5 26.4 260 99-445 2-315 (316)
19 TIGR00761 argB acetylglutamate 100.0 1.5E-38 3.2E-43 318.7 25.6 201 101-318 1-204 (231)
20 cd04241 AAK_FomA-like AAK_FomA 100.0 1E-34 2.3E-39 294.5 23.5 238 101-443 1-252 (252)
21 PRK12686 carbamate kinase; Rev 100.0 2.4E-32 5.1E-37 281.5 23.2 255 99-444 2-311 (312)
22 PRK12353 putative amino acid k 100.0 5.8E-32 1.3E-36 281.7 25.8 262 98-445 1-314 (314)
23 PRK12454 carbamate kinase-like 100.0 6.8E-32 1.5E-36 277.6 23.8 258 99-445 2-313 (313)
24 cd02115 AAK Amino Acid Kinases 100.0 6.8E-32 1.5E-36 272.4 19.4 237 103-443 1-248 (248)
25 COG0263 ProB Glutamate 5-kinas 100.0 7.9E-31 1.7E-35 268.1 21.9 296 99-506 6-332 (369)
26 TIGR00746 arcC carbamate kinas 100.0 6.1E-30 1.3E-34 264.8 25.6 255 100-444 1-309 (310)
27 PRK09411 carbamate kinase; Rev 100.0 2.3E-29 4.9E-34 256.2 23.6 245 100-444 2-296 (297)
28 PF00696 AA_kinase: Amino acid 100.0 2.2E-29 4.7E-34 253.2 21.0 192 100-317 1-211 (242)
29 cd04235 AAK_CK AAK_CK: Carbama 100.0 5.4E-29 1.2E-33 256.5 23.1 253 101-444 1-308 (308)
30 PRK13402 gamma-glutamyl kinase 100.0 2.4E-29 5.2E-34 266.5 20.9 292 99-506 5-330 (368)
31 PRK05429 gamma-glutamyl kinase 100.0 1.1E-28 2.4E-33 263.2 26.1 293 99-506 8-334 (372)
32 COG0549 ArcC Carbamate kinase 100.0 2.7E-28 5.8E-33 242.2 23.7 257 100-444 1-311 (312)
33 cd04256 AAK_P5CS_ProBA AAK_P5C 100.0 8.6E-29 1.9E-33 254.6 20.9 246 99-444 8-284 (284)
34 PRK12354 carbamate kinase; Rev 100.0 9.9E-29 2.2E-33 253.6 20.4 252 100-447 1-302 (307)
35 TIGR01027 proB glutamate 5-kin 100.0 1.1E-27 2.4E-32 254.6 22.9 293 100-506 1-326 (363)
36 cd04242 AAK_G5K_ProB AAK_G5K_P 100.0 1.2E-27 2.6E-32 242.8 21.2 233 101-444 1-251 (251)
37 PTZ00489 glutamate 5-kinase; P 100.0 1.9E-27 4.2E-32 241.8 22.7 234 99-446 8-260 (264)
38 PRK12314 gamma-glutamyl kinase 100.0 2.2E-27 4.8E-32 242.5 21.3 236 99-445 9-264 (266)
39 cd04261 AAK_AKii-LysC-BS AAK_A 99.9 2.2E-26 4.8E-31 231.9 23.4 189 101-317 1-203 (239)
40 cd04260 AAK_AKi-DapG-BS AAK_AK 99.9 2.5E-26 5.3E-31 232.2 23.4 190 101-318 1-209 (244)
41 cd04246 AAK_AK-DapG-like AAK_A 99.9 3.7E-26 7.9E-31 230.3 23.5 189 101-317 1-203 (239)
42 KOG1154 Gamma-glutamyl kinase 99.9 5.4E-27 1.2E-31 226.2 14.2 245 99-446 9-276 (285)
43 COG1608 Predicted archaeal kin 99.9 1.5E-25 3.3E-30 218.5 21.3 236 102-444 3-251 (252)
44 TIGR01092 P5CS delta l-pyrroli 99.9 2.3E-24 5.1E-29 247.2 20.5 251 99-449 7-279 (715)
45 cd04234 AAK_AK AAK_AK: Amino A 99.9 3.4E-24 7.4E-29 214.4 17.2 176 101-317 1-190 (227)
46 PLN02418 delta-1-pyrroline-5-c 99.9 1.3E-23 2.8E-28 240.8 23.8 248 99-448 15-286 (718)
47 PRK08210 aspartate kinase I; R 99.9 1.7E-23 3.8E-28 226.2 21.6 192 99-318 1-211 (403)
48 PRK00358 pyrH uridylate kinase 99.9 1.5E-22 3.1E-27 203.1 23.5 215 100-444 1-231 (231)
49 cd04239 AAK_UMPK-like AAK_UMPK 99.9 1.4E-22 3.1E-27 202.9 22.5 214 101-444 1-229 (229)
50 PRK06635 aspartate kinase; Rev 99.9 3.2E-22 7E-27 216.4 23.9 191 99-317 1-205 (404)
51 cd04255 AAK_UMPK-MosAB AAK_UMP 99.9 2.9E-22 6.4E-27 203.9 21.8 212 100-444 31-262 (262)
52 PRK08841 aspartate kinase; Val 99.9 1.1E-21 2.3E-26 210.7 24.9 191 100-318 2-206 (392)
53 cd04254 AAK_UMPK-PyrH-Ec UMP k 99.9 6.5E-22 1.4E-26 198.4 21.0 215 100-444 1-231 (231)
54 TIGR00656 asp_kin_monofn aspar 99.9 8.4E-22 1.8E-26 213.0 21.7 192 101-318 2-207 (401)
55 PRK14558 pyrH uridylate kinase 99.9 2.4E-21 5.2E-26 194.3 23.1 216 100-446 1-231 (231)
56 PRK07431 aspartate kinase; Pro 99.9 4.9E-21 1.1E-25 216.5 24.8 191 100-318 2-208 (587)
57 TIGR02075 pyrH_bact uridylate 99.9 2.2E-20 4.7E-25 187.6 23.8 215 100-444 2-233 (233)
58 cd04253 AAK_UMPK-PyrH-Pf AAK_U 99.9 1.6E-20 3.4E-25 187.2 21.9 210 101-444 1-221 (221)
59 TIGR02076 pyrH_arch uridylate 99.9 1.5E-20 3.3E-25 187.2 21.5 210 102-444 1-221 (221)
60 TIGR00657 asp_kinases aspartat 99.8 2.6E-19 5.7E-24 195.9 19.7 197 101-318 2-246 (441)
61 cd04240 AAK_UC AAK_UC: Unchara 99.8 4.8E-19 1.1E-23 174.2 19.2 149 103-312 1-157 (203)
62 PRK14557 pyrH uridylate kinase 99.8 4E-18 8.6E-23 172.3 24.3 218 99-447 4-240 (247)
63 PRK14556 pyrH uridylate kinase 99.8 7E-17 1.5E-21 162.1 23.0 218 99-445 15-248 (249)
64 cd04244 AAK_AK-LysC-like AAK_A 99.7 1.1E-16 2.5E-21 166.1 17.4 199 101-318 1-262 (298)
65 COG1246 ArgA N-acetylglutamate 99.7 6.9E-17 1.5E-21 149.0 9.5 122 449-576 1-123 (153)
66 PRK06291 aspartate kinase; Pro 99.7 1.6E-15 3.4E-20 167.0 20.3 195 101-316 2-264 (465)
67 COG0527 LysC Aspartokinases [A 99.7 7.2E-15 1.6E-19 159.8 22.4 199 100-320 2-254 (447)
68 PRK08373 aspartate kinase; Val 99.7 1.6E-14 3.4E-19 152.1 23.2 194 98-316 2-242 (341)
69 COG0528 PyrH Uridylate kinase 99.6 7.7E-14 1.7E-18 137.0 22.8 217 98-444 4-237 (238)
70 cd04259 AAK_AK-DapDC AAK_AK-Da 99.6 1.5E-13 3.2E-18 142.5 20.0 201 101-318 1-259 (295)
71 TIGR02078 AspKin_pair Pyrococc 99.5 7.3E-13 1.6E-17 138.7 20.5 78 238-315 144-231 (327)
72 cd04257 AAK_AK-HSDH AAK_AK-HSD 99.5 5.6E-13 1.2E-17 138.2 18.7 193 102-318 2-258 (294)
73 cd04243 AAK_AK-HSDH-like AAK_A 99.5 1.3E-12 2.7E-17 135.5 18.9 79 241-319 168-258 (293)
74 cd04245 AAK_AKiii-YclM-BS AAK_ 99.4 1.4E-11 3.1E-16 127.2 23.0 114 194-320 130-254 (288)
75 PRK10146 aminoalkylphosphonic 99.4 2.4E-13 5.3E-18 124.8 8.2 130 449-582 4-144 (144)
76 PRK09084 aspartate kinase III; 99.4 6.7E-12 1.5E-16 137.6 18.0 192 101-319 1-253 (448)
77 PRK05925 aspartate kinase; Pro 99.4 6.4E-12 1.4E-16 137.1 16.5 72 247-318 161-243 (440)
78 PRK08961 bifunctional aspartat 99.4 7.8E-12 1.7E-16 147.3 16.1 79 240-318 178-268 (861)
79 cd04258 AAK_AKiii-LysC-EC AAK_ 99.4 7.5E-11 1.6E-15 122.1 21.1 72 249-320 176-258 (292)
80 PRK07757 acetyltransferase; Pr 99.4 8.5E-12 1.8E-16 116.1 12.8 121 449-576 2-122 (152)
81 PTZ00330 acetyltransferase; Pr 99.3 4E-12 8.7E-17 117.1 9.5 129 449-581 7-146 (147)
82 PRK09034 aspartate kinase; Rev 99.3 1.1E-10 2.4E-15 128.3 21.9 127 173-320 116-254 (454)
83 PRK07922 N-acetylglutamate syn 99.3 1.7E-11 3.7E-16 117.2 11.9 121 449-576 6-127 (169)
84 cd04247 AAK_AK-Hom3 AAK_AK-Hom 99.3 9.4E-11 2E-15 122.0 17.1 71 250-320 189-270 (306)
85 PRK09436 thrA bifunctional asp 99.3 8.5E-11 1.8E-15 137.5 18.8 76 242-317 172-259 (819)
86 PLN02551 aspartokinase 99.3 3E-10 6.6E-15 126.2 20.1 197 100-320 52-313 (521)
87 PLN02706 glucosamine 6-phospha 99.2 2.9E-11 6.3E-16 112.2 9.5 127 449-582 7-150 (150)
88 PF13527 Acetyltransf_9: Acety 99.2 3E-11 6.5E-16 108.7 9.2 117 450-573 1-126 (127)
89 PRK12308 bifunctional arginino 99.2 6.9E-11 1.5E-15 134.6 12.0 122 449-578 464-586 (614)
90 TIGR03827 GNAT_ablB putative b 99.2 1.9E-10 4.1E-15 117.9 12.2 123 449-576 116-245 (266)
91 PF13673 Acetyltransf_10: Acet 99.1 1.8E-10 3.8E-15 101.7 9.4 104 458-571 1-117 (117)
92 COG2054 Uncharacterized archae 99.1 2.8E-09 6.1E-14 100.4 16.5 114 248-445 90-210 (212)
93 PRK09831 putative acyltransfer 99.1 3.4E-10 7.4E-15 105.1 9.9 113 449-576 1-126 (147)
94 PHA00673 acetyltransferase dom 99.1 6.3E-10 1.4E-14 104.2 11.4 126 452-583 10-153 (154)
95 PRK03624 putative acetyltransf 99.1 3.9E-10 8.4E-15 101.9 9.5 118 449-575 3-129 (140)
96 PRK09466 metL bifunctional asp 99.1 9.6E-10 2.1E-14 128.1 15.1 128 194-338 140-281 (810)
97 KOG3216 Diamine acetyltransfer 99.0 1.6E-09 3.4E-14 99.5 10.5 124 449-576 4-146 (163)
98 PF00583 Acetyltransf_1: Acety 99.0 1.1E-09 2.3E-14 90.8 8.0 76 493-572 1-83 (83)
99 PRK09491 rimI ribosomal-protei 99.0 1.8E-09 3.9E-14 99.8 10.4 117 449-575 2-124 (146)
100 TIGR02382 wecD_rffC TDP-D-fuco 99.0 1.8E-09 3.9E-14 105.0 9.8 124 449-577 44-186 (191)
101 TIGR02406 ectoine_EctA L-2,4-d 99.0 2.1E-09 4.5E-14 101.5 9.0 119 451-573 1-125 (157)
102 PRK10140 putative acetyltransf 98.9 4.9E-09 1.1E-13 97.8 10.2 123 449-576 4-141 (162)
103 PRK10975 TDP-fucosamine acetyl 98.9 6.4E-09 1.4E-13 101.3 10.9 127 448-579 46-191 (194)
104 PRK10514 putative acetyltransf 98.9 3.5E-09 7.7E-14 97.4 8.3 116 449-576 2-126 (145)
105 PRK10314 putative acyltransfer 98.9 3.2E-09 6.9E-14 99.9 8.0 122 451-579 9-137 (153)
106 PF13508 Acetyltransf_7: Acety 98.9 4E-09 8.6E-14 87.4 7.1 75 489-573 4-79 (79)
107 PRK01346 hypothetical protein; 98.9 7.1E-09 1.5E-13 112.6 11.0 126 448-580 6-140 (411)
108 COG3153 Predicted acetyltransf 98.9 2.3E-08 5E-13 95.3 12.6 120 448-575 3-130 (171)
109 COG1247 Sortase and related ac 98.9 1.3E-08 2.9E-13 96.7 10.9 124 449-576 2-143 (169)
110 TIGR01575 rimI ribosomal-prote 98.9 1.1E-08 2.3E-13 91.5 9.8 109 458-576 1-116 (131)
111 TIGR03103 trio_acet_GNAT GNAT- 98.9 1.1E-08 2.3E-13 115.1 11.7 165 401-575 23-216 (547)
112 PF13420 Acetyltransf_4: Acety 98.9 2.4E-08 5.3E-13 92.7 12.0 121 451-576 1-139 (155)
113 KOG3396 Glucosamine-phosphate 98.8 1.4E-08 3E-13 91.5 8.8 127 449-582 7-150 (150)
114 TIGR01686 FkbH FkbH-like domai 98.8 1.8E-08 3.9E-13 106.1 10.3 120 449-574 187-319 (320)
115 TIGR03448 mycothiol_MshD mycot 98.8 2.8E-08 6.1E-13 102.6 9.9 119 452-580 4-132 (292)
116 COG0456 RimI Acetyltransferase 98.7 4.5E-08 9.7E-13 92.8 10.0 124 447-578 10-156 (177)
117 PHA01807 hypothetical protein 98.7 6.3E-08 1.4E-12 91.2 10.1 99 453-555 8-119 (153)
118 PRK10562 putative acetyltransf 98.7 6.3E-08 1.4E-12 89.5 8.1 119 450-580 1-129 (145)
119 PRK13688 hypothetical protein; 98.7 3.6E-08 7.7E-13 93.2 6.1 108 449-577 18-134 (156)
120 PF13523 Acetyltransf_8: Acety 98.6 8.3E-08 1.8E-12 89.3 7.7 122 451-576 1-141 (152)
121 cd02169 Citrate_lyase_ligase C 98.6 6.4E-08 1.4E-12 100.6 7.4 77 489-575 7-83 (297)
122 KOG3139 N-acetyltransferase [G 98.6 3.8E-07 8.2E-12 84.9 10.1 87 490-580 58-150 (165)
123 TIGR03448 mycothiol_MshD mycot 98.5 1E-06 2.2E-11 91.0 11.8 124 449-576 150-288 (292)
124 TIGR00124 cit_ly_ligase [citra 98.4 6.9E-07 1.5E-11 94.3 9.8 82 485-576 28-109 (332)
125 PRK15130 spermidine N1-acetylt 98.4 3.6E-07 7.8E-12 88.0 6.0 123 449-576 7-145 (186)
126 TIGR03585 PseH pseudaminic aci 98.4 1.6E-06 3.5E-11 80.4 9.5 120 450-575 2-137 (156)
127 PRK09181 aspartate kinase; Val 98.3 2.3E-05 5.1E-10 86.7 17.6 79 241-320 182-276 (475)
128 PRK10151 ribosomal-protein-L7/ 98.3 5.6E-06 1.2E-10 79.1 10.5 123 449-576 11-155 (179)
129 cd04248 AAK_AK-Ectoine AAK_AK- 98.2 5.1E-05 1.1E-09 78.7 16.8 78 242-320 177-270 (304)
130 PF13302 Acetyltransf_3: Acety 98.2 6.5E-06 1.4E-10 74.8 8.9 118 450-572 3-142 (142)
131 cd04301 NAT_SF N-Acyltransfera 98.2 9.4E-06 2E-10 61.7 7.7 59 491-553 2-61 (65)
132 COG2153 ElaA Predicted acyltra 98.1 5E-06 1.1E-10 76.1 6.1 88 486-579 48-139 (155)
133 PRK10809 ribosomal-protein-S5- 98.0 2.3E-05 5.1E-10 75.9 9.9 122 449-575 18-165 (194)
134 KOG3235 Subunit of the major N 98.0 8.7E-06 1.9E-10 75.4 5.6 89 449-541 2-99 (193)
135 COG3393 Predicted acetyltransf 97.9 1.3E-05 2.8E-10 80.6 5.4 79 493-576 182-262 (268)
136 KOG2488 Acetyltransferase (GNA 97.8 7.1E-05 1.5E-09 71.6 8.0 116 457-576 54-182 (202)
137 KOG3397 Acetyltransferases [Ge 97.8 8.7E-05 1.9E-09 69.8 8.4 77 492-573 61-138 (225)
138 TIGR01211 ELP3 histone acetylt 97.8 5.2E-05 1.1E-09 84.7 7.7 81 496-581 422-521 (522)
139 PF08445 FR47: FR47-like prote 97.7 5.9E-05 1.3E-09 64.0 6.1 61 513-577 21-83 (86)
140 PF14542 Acetyltransf_CG: GCN5 97.7 0.00017 3.8E-09 60.1 8.1 57 492-554 3-59 (78)
141 KOG0456 Aspartate kinase [Amin 97.4 0.00087 1.9E-08 70.5 10.2 72 249-320 257-340 (559)
142 COG2388 Predicted acetyltransf 97.4 0.00045 9.8E-09 60.1 6.6 65 488-557 15-79 (99)
143 COG3981 Predicted acetyltransf 97.4 0.0011 2.4E-08 62.8 9.5 62 488-554 69-134 (174)
144 PF13718 GNAT_acetyltr_2: GNAT 97.1 0.0013 2.7E-08 64.4 7.1 63 479-541 14-118 (196)
145 KOG3138 Predicted N-acetyltran 97.1 0.00044 9.5E-09 67.0 3.9 121 449-578 17-154 (187)
146 PF04958 AstA: Arginine N-succ 97.0 0.0017 3.7E-08 68.5 7.5 91 449-539 2-147 (342)
147 COG3053 CitC Citrate lyase syn 96.9 0.0036 7.9E-08 63.8 8.0 109 449-574 4-113 (352)
148 KOG3234 Acetyltransferase, (GN 96.9 0.0017 3.6E-08 60.6 5.2 90 449-539 2-95 (173)
149 PF12568 DUF3749: Acetyltransf 96.8 0.0049 1.1E-07 55.9 8.0 76 453-539 9-87 (128)
150 PF04768 DUF619: Protein of un 96.8 0.0027 5.9E-08 60.9 6.1 108 429-539 2-114 (170)
151 PRK10456 arginine succinyltran 96.7 0.0039 8.4E-08 65.7 7.7 89 449-537 2-143 (344)
152 TIGR03244 arg_catab_AstA argin 96.7 0.0053 1.1E-07 64.6 8.2 87 451-537 2-141 (336)
153 PF12746 GNAT_acetyltran: GNAT 96.6 0.0051 1.1E-07 63.1 7.5 89 479-574 157-245 (265)
154 TIGR03245 arg_AOST_alph argini 96.6 0.0057 1.2E-07 64.2 7.8 87 451-537 2-142 (336)
155 TIGR03243 arg_catab_AOST argin 96.5 0.0072 1.6E-07 63.5 7.9 87 451-537 2-141 (335)
156 PF08444 Gly_acyl_tr_C: Aralky 96.1 0.0055 1.2E-07 52.2 3.6 75 492-575 3-79 (89)
157 PF13480 Acetyltransf_6: Acety 96.1 0.047 1E-06 49.1 10.0 61 489-555 72-132 (142)
158 COG0454 WecD Histone acetyltra 96.0 0.0041 8.9E-08 51.2 2.5 30 519-552 87-116 (156)
159 COG1670 RimL Acetyltransferase 96.0 0.014 2.9E-07 54.8 6.3 75 497-576 77-158 (187)
160 COG1444 Predicted P-loop ATPas 96.0 0.019 4.1E-07 66.3 8.1 115 457-577 437-592 (758)
161 KOG4144 Arylalkylamine N-acety 95.7 0.0045 9.7E-08 57.5 1.3 119 449-576 12-161 (190)
162 COG4552 Eis Predicted acetyltr 95.7 0.012 2.6E-07 61.6 4.4 82 488-576 39-127 (389)
163 COG5630 ARG2 Acetylglutamate s 95.2 0.13 2.9E-06 54.2 10.0 133 101-261 142-274 (495)
164 COG3138 AstA Arginine/ornithin 94.6 0.068 1.5E-06 54.5 6.1 88 449-536 2-142 (336)
165 PF13880 Acetyltransf_13: ESCO 93.8 0.048 1E-06 44.5 2.6 26 514-539 6-31 (70)
166 TIGR03694 exosort_acyl putativ 93.2 0.21 4.5E-06 50.7 6.7 86 489-578 57-200 (241)
167 PF01853 MOZ_SAS: MOZ/SAS fami 92.7 0.39 8.5E-06 46.6 7.3 49 498-551 66-114 (188)
168 COG3818 Predicted acetyltransf 92.5 0.15 3.3E-06 46.3 3.9 122 449-576 8-148 (167)
169 PF00765 Autoind_synth: Autoin 89.7 1.2 2.6E-05 43.3 7.5 85 488-576 45-155 (182)
170 PLN03238 probable histone acet 89.7 0.71 1.5E-05 47.6 6.1 50 497-551 140-189 (290)
171 PRK13834 putative autoinducer 87.9 2 4.4E-05 42.5 7.9 84 488-575 53-164 (207)
172 PF04377 ATE_C: Arginine-tRNA- 86.4 8.6 0.00019 35.2 10.4 79 489-574 40-120 (128)
173 PF05301 Mec-17: Touch recepto 86.3 2.4 5.3E-05 38.1 6.6 25 515-539 48-72 (120)
174 PF06852 DUF1248: Protein of u 86.3 1.9 4E-05 41.9 6.4 49 491-539 49-104 (181)
175 PTZ00064 histone acetyltransfe 86.1 1.3 2.9E-05 48.8 5.7 50 497-551 369-418 (552)
176 COG5628 Predicted acetyltransf 86.0 2 4.4E-05 38.6 5.9 52 488-539 37-91 (143)
177 cd04264 DUF619-NAGS DUF619 dom 85.8 2.2 4.8E-05 37.3 6.0 46 494-539 14-60 (99)
178 PLN03239 histone acetyltransfe 85.7 1.6 3.6E-05 46.2 6.1 49 498-551 199-247 (351)
179 PF01233 NMT: Myristoyl-CoA:pr 84.6 5.9 0.00013 37.6 8.6 56 495-554 86-147 (162)
180 KOG4135 Predicted phosphogluco 84.1 0.99 2.1E-05 42.0 3.2 58 513-574 107-168 (185)
181 PLN00104 MYST -like histone ac 82.6 1.5 3.2E-05 48.1 4.4 50 497-551 291-340 (450)
182 cd04265 DUF619-NAGS-U DUF619 d 82.6 3.2 6.9E-05 36.3 5.6 44 496-539 17-60 (99)
183 COG3375 Uncharacterized conser 81.3 6.9 0.00015 39.1 8.0 65 488-556 46-113 (266)
184 PF02799 NMT_C: Myristoyl-CoA: 81.0 13 0.00028 36.4 9.7 97 449-553 29-142 (190)
185 PRK01305 arginyl-tRNA-protein 78.4 24 0.00053 35.8 11.2 92 475-573 125-224 (240)
186 COG1243 ELP3 Histone acetyltra 77.3 1.5 3.3E-05 47.9 2.3 49 522-576 459-509 (515)
187 TIGR03019 pepcterm_femAB FemAB 77.0 13 0.00029 39.1 9.4 84 489-578 196-283 (330)
188 PF13444 Acetyltransf_5: Acety 73.9 6.2 0.00014 34.2 4.9 47 489-535 32-100 (101)
189 KOG2535 RNA polymerase II elon 71.7 2.8 6.2E-05 44.1 2.5 50 523-578 497-549 (554)
190 COG3916 LasI N-acyl-L-homoseri 70.3 19 0.00041 35.6 7.7 63 488-554 52-141 (209)
191 KOG2747 Histone acetyltransfer 70.0 5.3 0.00011 43.1 4.2 34 513-550 260-293 (396)
192 COG3882 FkbH Predicted enzyme 65.4 6.9 0.00015 43.3 4.0 120 449-574 414-548 (574)
193 KOG4601 Uncharacterized conser 63.9 8.5 0.00018 38.5 3.9 92 450-541 22-136 (264)
194 PF09390 DUF1999: Protein of u 61.5 69 0.0015 29.9 9.0 103 450-557 2-122 (161)
195 PHA03398 viral phosphatase sup 59.8 30 0.00066 36.3 7.3 57 100-156 129-191 (303)
196 KOG2779 N-myristoyl transferas 59.5 42 0.0009 35.9 8.2 59 449-507 261-327 (421)
197 COG5027 SAS2 Histone acetyltra 59.2 4.7 0.0001 42.6 1.3 50 489-539 235-288 (395)
198 KOG2036 Predicted P-loop ATPas 57.8 8.4 0.00018 44.4 3.0 29 513-541 614-642 (1011)
199 PF10686 DUF2493: Protein of u 57.4 32 0.0007 28.1 5.7 39 100-140 3-41 (71)
200 TIGR01684 viral_ppase viral ph 55.5 42 0.00091 35.2 7.5 58 99-156 126-189 (301)
201 COG2401 ABC-type ATPase fused 54.6 11 0.00024 41.2 3.2 38 512-553 240-277 (593)
202 KOG3014 Protein involved in es 51.8 40 0.00086 34.3 6.4 26 514-539 184-209 (257)
203 KOG2779 N-myristoyl transferas 50.0 61 0.0013 34.7 7.6 54 494-551 142-201 (421)
204 KOG2696 Histone acetyltransfer 48.8 20 0.00044 38.3 4.0 44 498-541 199-245 (403)
205 TIGR01668 YqeG_hyp_ppase HAD s 48.6 1.5E+02 0.0032 28.0 9.7 60 94-153 20-84 (170)
206 PF09924 DUF2156: Uncharacteri 47.7 1.2E+02 0.0027 31.3 9.7 61 488-553 180-241 (299)
207 PTZ00063 histone deacetylase; 46.1 78 0.0017 35.1 8.2 63 80-142 231-301 (436)
208 PRK14852 hypothetical protein; 42.1 75 0.0016 38.7 7.8 121 451-576 31-181 (989)
209 COG2935 Putative arginyl-tRNA: 39.9 2.1E+02 0.0046 29.2 9.4 52 496-553 159-210 (253)
210 PRK12702 mannosyl-3-phosphogly 38.4 1.1E+02 0.0023 32.3 7.4 55 99-153 1-58 (302)
211 cd07041 STAS_RsbR_RsbS_like Su 37.7 2E+02 0.0042 24.6 8.1 68 86-154 27-96 (109)
212 TIGR02463 MPGP_rel mannosyl-3- 37.0 1.1E+02 0.0023 29.8 7.0 52 102-153 2-56 (221)
213 PF00850 Hist_deacetyl: Histon 36.9 1.2E+02 0.0025 32.0 7.5 64 79-142 220-295 (311)
214 PRK01158 phosphoglycolate phos 35.9 1.1E+02 0.0024 29.8 7.0 54 100-153 4-60 (230)
215 PLN02645 phosphoglycolate phos 35.3 1.3E+02 0.0027 31.6 7.6 55 99-153 28-87 (311)
216 PRK00192 mannosyl-3-phosphogly 35.0 1.2E+02 0.0025 30.9 7.1 55 99-153 4-61 (273)
217 PTZ00346 histone deacetylase; 34.1 1.5E+02 0.0033 32.8 8.0 63 79-141 248-318 (429)
218 TIGR01656 Histidinol-ppas hist 32.9 2.3E+02 0.0049 25.9 8.1 38 116-153 29-82 (147)
219 cd04266 DUF619-NAGS-FABP DUF61 32.4 1.4E+02 0.003 26.6 6.1 29 511-539 37-66 (108)
220 PTZ00174 phosphomannomutase; P 32.3 76 0.0017 31.9 5.2 42 99-140 5-48 (247)
221 COG0561 Cof Predicted hydrolas 32.2 1.2E+02 0.0026 30.4 6.7 56 99-154 3-61 (264)
222 PRK15126 thiamin pyrimidine py 31.9 1.4E+02 0.0031 30.1 7.2 54 100-153 3-59 (272)
223 PRK10530 pyridoxal phosphate ( 31.5 1.3E+02 0.0029 30.0 6.9 54 100-153 4-60 (272)
224 PRK10513 sugar phosphate phosp 29.0 1.6E+02 0.0035 29.6 6.9 54 100-153 4-60 (270)
225 PRK10976 putative hydrolase; P 28.6 94 0.002 31.2 5.1 54 100-153 3-59 (266)
226 PF07395 Mig-14: Mig-14; Inte 28.5 1.1E+02 0.0023 31.7 5.3 62 491-552 176-239 (264)
227 TIGR01689 EcbF-BcbF capsule bi 28.4 1.3E+02 0.0028 27.5 5.4 41 100-140 2-50 (126)
228 TIGR01487 SPP-like sucrose-pho 28.3 1.9E+02 0.0041 28.0 7.1 53 100-152 2-57 (215)
229 KOG1342 Histone deacetylase co 27.7 2.3E+02 0.0051 30.7 7.8 66 79-144 232-305 (425)
230 TIGR01662 HAD-SF-IIIA HAD-supe 27.3 1.6E+02 0.0035 26.0 5.9 53 101-153 2-73 (132)
231 PRK03669 mannosyl-3-phosphogly 27.3 1.9E+02 0.004 29.4 7.1 53 100-152 8-63 (271)
232 TIGR00521 coaBC_dfp phosphopan 25.7 2.1E+02 0.0045 31.3 7.4 62 79-140 165-235 (390)
233 COG2898 Uncharacterized conser 25.6 1.7E+02 0.0036 33.4 6.7 60 489-553 394-453 (538)
234 TIGR01681 HAD-SF-IIIC HAD-supe 25.5 4.7E+02 0.01 23.2 8.7 51 101-151 2-68 (128)
235 COG0560 SerB Phosphoserine pho 25.3 1.1E+02 0.0024 30.3 4.7 37 119-155 82-119 (212)
236 TIGR02461 osmo_MPG_phos mannos 24.9 2.2E+02 0.0049 28.2 7.0 52 102-153 2-55 (225)
237 TIGR01457 HAD-SF-IIA-hyp2 HAD- 24.6 1.6E+02 0.0035 29.6 6.0 54 100-153 2-60 (249)
238 PF02633 Creatininase: Creatin 22.7 4.6E+02 0.01 26.1 8.8 53 240-295 5-63 (237)
239 COG1366 SpoIIAA Anti-anti-sigm 22.4 5.2E+02 0.011 22.5 8.3 72 84-156 28-101 (117)
240 PF04339 DUF482: Protein of un 22.3 5.7E+02 0.012 27.8 9.8 92 455-553 211-309 (370)
241 TIGR01452 PGP_euk phosphoglyco 20.5 2.3E+02 0.0051 28.9 6.3 56 99-154 2-62 (279)
242 PF11869 DUF3389: Protein of u 20.4 62 0.0013 26.8 1.5 34 102-140 17-50 (75)
No 1
>PLN02825 amino-acid N-acetyltransferase
Probab=100.00 E-value=3.9e-92 Score=768.75 Aligned_cols=482 Identities=73% Similarity=1.136 Sum_probs=438.3
Q ss_pred HHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCChHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccC
Q 007903 83 FVKWFREAWPYLWAHRGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRI 162 (585)
Q Consensus 83 ~~~~~r~a~~yi~~~r~k~iVIKlGGs~l~~~~l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rv 162 (585)
||+|||+|+|||++||+||||||+||+++.++.+.+++.||++|+..|+++||||||||||++.++++|++++|++|+||
T Consensus 1 ~v~~fr~a~pYI~~~rgktfVIk~gG~~l~~~~~~~l~~DialL~~lGi~~VlVHGggpqI~~~l~~~gi~~~f~~G~RV 80 (515)
T PLN02825 1 FVRWFREAWPYIQGHRGSTFVVVISGEVVAGPHLDNILQDISLLHGLGIKFVLVPGTHVQIDKLLAERGREPKYVGAYRI 80 (515)
T ss_pred ChhHHHhhhHHHHHHCCCEEEEEECchhhcCchHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHcCCCceeeCCccc
Confidence 79999999999999999999999999999887899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHH
Q 007903 163 TDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVT 242 (585)
Q Consensus 163 t~~~~l~~~~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~ 242 (585)
||+++|+++++++|++|.+|++.|++|++|..|+++|+++|++.++|++.||||++|+|+|+++++||||+|+|++||++
T Consensus 81 Td~~~L~~~~~~~G~v~~~i~a~Ls~~~~v~~l~~~G~~a~~~~~gl~~~~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~~ 160 (515)
T PLN02825 81 TDSAALQASMEAAGKIRVMIEAKLSPGPSIPNLRRHGDNSRWHEVGVSVASGNFLAAKRRGVVNGVDFGATGEVKKIDVS 160 (515)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhcCCCCccccCceEeccCcEEEEEECCCCcCccccceeeEEEEcHH
Confidence 99999999999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeEEEcCCccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccCCCCcccccccHHHHHHHHHhhchh
Q 007903 243 RMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDESGHLIRFLTLQEADSLIRQRVKQ 322 (585)
Q Consensus 243 ~I~~lL~~G~IPVi~~v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~~~~~lI~~it~~e~~~li~~~~~~ 322 (585)
.|+.+|++|.|||++|++++++|+++|+|+|++|+++|.+|+||||||+||+++++.++++|++++.+|++++++++++|
T Consensus 161 ~i~~~L~~g~Ipvisplg~s~~Ge~~NinaD~vA~avA~aL~A~KLI~ltd~~~~~~~g~li~~l~~~e~~~li~~~~~~ 240 (515)
T PLN02825 161 RIKERLDSNCIVLLSNLGYSSSGEVLNCNTYEVATACALAIGADKLICIVDGPILDENGRLIRFMTLEEADMLIRKRAKQ 240 (515)
T ss_pred HHHHHHhCCCeEEECCceECCCCCEEeeCHHHHHHHHHHHcCCCeEEEEeCcceecCCCCCcCcCCHHHHHHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999888899999999999999999988899
Q ss_pred hhHHHHHHhhhhcccccccCC-C-------CCCCcccccCCCCccccchhccccCCccccCCCCCccccccccccccccc
Q 007903 323 SEIAANYVKAVAEEDITCFGH-S-------DSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERL 394 (585)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~ 394 (585)
|++||++.||+++.+.++.-. + +.+|. +..........|.+|+++.+|.| ...+||||+||+|++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 313 (515)
T PLN02825 241 SEIAANYVKAVGGEDYSYSLGLDSVNTTPFNNNGR------GFWGSGSATDSFQNGVGFDNGNG-LSGEQGFAIGGEERL 313 (515)
T ss_pred chhhhhhhhhccccccccccccccccccccccccc------cccccccccccccccccccCccc-ccccccccccchhhc
Confidence 999999999999986543110 0 01111 00111223335677777777666 478899999999999
Q ss_pred ccccCcHHHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeeccccccccccccccCHHHHHHHHHHHHHccc
Q 007903 395 SRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGA 474 (585)
Q Consensus 395 ~~~~~m~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~~d~~~~IR~at~~D~~~I~~Li~~~~~~~~ 474 (585)
+++.++++||.+|.+||++||+|+||+|++.+|+||+||||+||+||+|++|.|+.||+++++|++.|.+|+++++..+.
T Consensus 314 ~~~~~~~~~l~~a~~a~~~gv~r~hl~~~~~~gall~elft~dg~gt~i~~~~~e~IR~At~eDi~~I~~Li~~lee~g~ 393 (515)
T PLN02825 314 SRLNGYLSELAAAAFVCRGGVQRVHLLDGTIEGVLLLELFTRDGMGTMIASDMYEGTRMARVEDLAGIRQIIRPLEESGI 393 (515)
T ss_pred hhhhhHHHHHHHHHHHHHcCCCeEEeccCCCCchHHHHhhccCCceeEeccChHhhheeCCHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred cccCCHHHHHhccCeEEEEEECCeEEEEEEEeeeccCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCccc
Q 007903 475 LVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTN 554 (585)
Q Consensus 475 ~~~~~~e~l~~~i~~~~Va~~dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~ 554 (585)
...++.+.++..+..|+|++.||++|||+.++++..++.++|.+|+|+|+|||+|+|++||++++ ++|+++|+...
T Consensus 394 lv~rs~e~le~ei~~f~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le----~~Ar~~G~~~L 469 (515)
T PLN02825 394 LVRRTDEELLRALDSFVVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIE----KKAASLGLEKL 469 (515)
T ss_pred CcCCCHHHHHhcCCcEEEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHH----HHHHHCCCCEE
Confidence 77888999998888899999999999999998776667899999999999999999999999999 99999999875
Q ss_pred CccceecccccccccCeeecCc
Q 007903 555 GFPFLRGRTHSYYRLKFNCSSK 576 (585)
Q Consensus 555 g~~~~~~~a~~YYrlGF~~~~~ 576 (585)
-+.. ....++|+++||...+.
T Consensus 470 ~Llt-t~a~~fY~k~GF~~~~~ 490 (515)
T PLN02825 470 FLLT-TRTADWFVRRGFSECSI 490 (515)
T ss_pred EEEe-CcHHHHHHHCCCEEeCh
Confidence 3222 23445666899997654
No 2
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=100.00 E-value=1.5e-72 Score=612.18 Aligned_cols=404 Identities=41% Similarity=0.672 Sum_probs=361.7
Q ss_pred HHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCChHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccC
Q 007903 83 FVKWFREAWPYLWAHRGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRI 162 (585)
Q Consensus 83 ~~~~~r~a~~yi~~~r~k~iVIKlGGs~l~~~~l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rv 162 (585)
|+++||||+|||++||++++|||+||+++.++++..+++||+.|+..|.++||||||||+++++++++|++++|++|+|+
T Consensus 1 ~~~~~~~~~~~i~~~~~~~~ViK~GG~~~~~~~~~~~~~~i~~l~~~g~~~vlVHGgg~~i~~~~~~~g~~~~~~~G~Rv 80 (429)
T TIGR01890 1 FVAWFREAAPYINAHRGKTFVVGLGGELVEGGNLGNIVADIALLHSLGVRLVLVHGARPQIERILAARGRTPHYHRGLRV 80 (429)
T ss_pred ChhHHhhhhHHHHHhCCCEEEEEEChhhccCccHHHHHHHHHHHHHCCCcEEEEcCCCHHHHHHHHHcCCCceeeCCccc
Confidence 79999999999999999999999999999987889999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHH
Q 007903 163 TDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVT 242 (585)
Q Consensus 163 t~~~~l~~~~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~ 242 (585)
|++++|+++.+++|++|..|++.|+ +++-..+.+.+++++.||+++.++++++.+++|+|++|+|+.+|++
T Consensus 81 T~~~~l~~~~~~~g~vn~~l~~~l~---------~~~~~~~~~~~~l~~~dg~~~~a~~~~~~~~~~~g~~G~v~~v~~~ 151 (429)
T TIGR01890 81 TDEASLEQAQQAAGTLRLAIEARLS---------MSLSNTPMAGSRLPVVSGNFVTARPIGVIEGVDYEHTGVIRKIDTE 151 (429)
T ss_pred CCHHHHHHHHHHhChHHHHHHHHHH---------hcCCcccccccCceEccceEEEEEECCCCcCccccccceEEEEcHH
Confidence 9999999986679999999999864 3321222334679999999999999887788999999999999999
Q ss_pred HHHHHHcCCCeEEEcCCccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccC-CCCcccccccHHHHHHHHHhhch
Q 007903 243 RMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEADSLIRQRVK 321 (585)
Q Consensus 243 ~I~~lL~~G~IPVi~~v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~-~~~~lI~~it~~e~~~li~~~~~ 321 (585)
.|+.+|+.|+|||++|++++.+|+++|+|+|++|++||.+|+|++|||+|||||+. .++++|++|+.+|+++++...
T Consensus 152 ~l~~ll~~g~ipvi~pi~~~~~g~~~nvnaD~~A~~lA~al~a~kli~ltdv~Gv~~~~g~~i~~i~~~~~~~l~~~~-- 229 (429)
T TIGR01890 152 GIRRQLDAGSIVLLSPLGHSPTGETFNLDMEDVATSVAISLKADKLIYFTLSPGISDPDGTLAAELSPQEVESLAERL-- 229 (429)
T ss_pred HHHHHHHCCCeEEECCcccCCCCCEEEeCHHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCcccCCHHHHHHHHHhc--
Confidence 99999999999999999999999999999999999999999999999999999984 569999999999999987541
Q ss_pred hhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccCcH
Q 007903 322 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 401 (585)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~ 401 (585)
.| || |.
T Consensus 230 -----------------------------------------------------~~-~~--------------------~~ 235 (429)
T TIGR01890 230 -----------------------------------------------------GS-ET--------------------TR 235 (429)
T ss_pred -----------------------------------------------------cC-CC--------------------cH
Confidence 13 43 69
Q ss_pred HHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeeccccccccccccccCHHHHHHHHHHHHHccccccCCHH
Q 007903 402 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDE 481 (585)
Q Consensus 402 ~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~~d~~~~IR~at~~D~~~I~~Li~~~~~~~~~~~~~~e 481 (585)
+||++|..|++.||+++||+||+.+++|+.|||+++|.||+|..|.|+.||+++++|++++.++++++....+..+++.+
T Consensus 236 ~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el~~~~g~GT~i~~d~y~~IR~at~~Dl~~I~~L~~~~~~~~~~~~~~~~ 315 (429)
T TIGR01890 236 RLLSAAVKACRGGVHRSHIVSYAEDGSLLQELFTRDGIGTSISKEAFESIRQATIDDIGGIAALIRPLEEQGILVRRSRE 315 (429)
T ss_pred HHHHHHHHHHHcCCCeEEEECCCCCcHHHHHHhcCCCCcceEeccchhheEECCHHHHHHHHHHHHHHHHcCCchhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887777776677788
Q ss_pred HHHhccCeEEEEEECCeEEEEEEEeeeccCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccceec
Q 007903 482 ELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRG 561 (585)
Q Consensus 482 ~l~~~i~~~~Va~~dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~~ 561 (585)
.+......+++++.+++++||+.+.++.+...++|..++|+|+|||+|+|++||++++ ++|+++|+..... ....
T Consensus 316 ~l~~~~~~~~V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~----~~A~~~G~~~l~v-~~~~ 390 (429)
T TIGR01890 316 YLEREISEFSIIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIE----DRARQMGISRLFV-LTTR 390 (429)
T ss_pred HHHhhcCcEEEEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHH----HHHHHcCCCEEEE-eecc
Confidence 8887777788999999999999998655556799999999999999999999999999 9999999886421 1122
Q ss_pred ccccccccCeeecCc
Q 007903 562 RTHSYYRLKFNCSSK 576 (585)
Q Consensus 562 ~a~~YYrlGF~~~~~ 576 (585)
..++|+++||+..+.
T Consensus 391 a~~fY~k~GF~~~g~ 405 (429)
T TIGR01890 391 TGHWFRERGFQTASV 405 (429)
T ss_pred hHHHHHHCCCEECCh
Confidence 344566899998765
No 3
>PRK05279 N-acetylglutamate synthase; Validated
Probab=100.00 E-value=1.5e-68 Score=583.14 Aligned_cols=410 Identities=43% Similarity=0.681 Sum_probs=361.1
Q ss_pred hhHHHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCChHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCC
Q 007903 80 DEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGR 159 (585)
Q Consensus 80 ~~~~~~~~r~a~~yi~~~r~k~iVIKlGGs~l~~~~l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g 159 (585)
...|+++||+++|||++||++++|||+||++|.+++++.++++|+.|+..|+++||||||||++++.++++|++++|++|
T Consensus 6 ~~~~~~~~~~~~~~i~~~~~~~~VIk~GG~~l~~~~~~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G 85 (441)
T PRK05279 6 STEFVDWFRHSAPYINAHRGKTFVIMLGGEAIAHGNFSNIVHDIALLHSLGIRLVLVHGARPQIEEQLAARGIEPRYHKG 85 (441)
T ss_pred hhHHHHHHHHHhHHHHHhCCCEEEEEECchhccChhHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHcCCCceecCC
Confidence 45699999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchhHHhcCCCC-cceeEEeeecCcceeeeeeccccccccCcceeeEEE
Q 007903 160 YRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSS-RWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKK 238 (585)
Q Consensus 160 ~rvt~~~~l~~~~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~-~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~ 238 (585)
+|+|++++|+++.++.|++|..|++.|+. |++. +++...+++.|++++.++|+++.++.|||++|+++.
T Consensus 86 ~RvT~~~~l~~~~~~~g~v~~~l~~~l~~----------g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~v~~ 155 (441)
T PRK05279 86 LRVTDAAALECVKQAAGELRLDIEARLSM----------GLPNTPMAGAHIRVVSGNFVTARPLGVDDGVDYQHTGEVRR 155 (441)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHhc----------cCCCCcccCCcceEeeccEEEEEECCCCCCccccceeeEEE
Confidence 99999999999855579999999987642 4441 122445788899999999998778889999999999
Q ss_pred ecHHHHHHHHcCCCeEEEcCCccCCCCceeeeChHHHHHHHHHHcCCCEEEEeeccccc-CCCCcccccccHHHHHHHHH
Q 007903 239 VDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DESGHLIRFLTLQEADSLIR 317 (585)
Q Consensus 239 v~~~~I~~lL~~G~IPVi~~v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl-~~~~~lI~~it~~e~~~li~ 317 (585)
+|.+.|+.||++|+|||++|++++++|+.+|+|+|++|++||.+|+||+|||+|||||+ ++++++|++++.+|+++++.
T Consensus 156 v~~~~i~~ll~~g~ipV~~~i~~~~~g~~~ni~~D~~a~~lA~~l~a~~lv~ltdv~GV~~~~~~~i~~i~~~~~~~~~~ 235 (441)
T PRK05279 156 IDAEAIRRQLDSGAIVLLSPLGYSPTGESFNLTMEEVATQVAIALKADKLIFFTESQGVLDEDGELIRELSPNEAQALLE 235 (441)
T ss_pred EeHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCCCCchhhhCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999998 46799999999999988875
Q ss_pred hhchhhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccc
Q 007903 318 QRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRL 397 (585)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~ 397 (585)
.-. .|+++ | |
T Consensus 236 ~~~--------------------------~~~~~------------------------g-g------------------- 245 (441)
T PRK05279 236 ALE--------------------------DGDYN------------------------S-G------------------- 245 (441)
T ss_pred hhh--------------------------cCCCC------------------------c-c-------------------
Confidence 210 01122 4 5
Q ss_pred cCcHHHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeeccccccccccccccCHHHHHHHHHHHHHcccccc
Q 007903 398 NGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGALVR 477 (585)
Q Consensus 398 ~~m~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~~d~~~~IR~at~~D~~~I~~Li~~~~~~~~~~~ 477 (585)
|.+||++|..|++.|+++|||+|++.+++|+.|+|+.+|.||+|.++.|+.||+++++|++++.+++.+.....+..+
T Consensus 246 --M~~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~~~g~GT~i~~~~y~~IR~at~~D~~~I~~L~~~~~~~~~~~~ 323 (441)
T PRK05279 246 --TARFLRAAVKACRGGVRRSHLISYAEDGALLQELFTRDGIGTMIVMESLEQLRRATIDDVGGILELIRPLEEQGILVR 323 (441)
T ss_pred --HHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCceEEecCchHHeEeCCHHHHHHHHHHHHHHHHcCCccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999887776666667
Q ss_pred CCHHHHHhccCeEEEEEECCeEEEEEEEeeeccCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCcc
Q 007903 478 RTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFP 557 (585)
Q Consensus 478 ~~~e~l~~~i~~~~Va~~dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~ 557 (585)
|+.+.+...+..+++++++++++||+.+.++.....++|..++|+|+|||+|+|++||++++ ++|++.|+......
T Consensus 324 ~~~~~l~~~~~~~~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~----~~a~~~g~~~l~l~ 399 (441)
T PRK05279 324 RSREQLEREIDKFTVIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIE----QRARQLGLKRLFVL 399 (441)
T ss_pred cCHHHHhcccCcEEEEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHH----HHHHHcCCCEEEEe
Confidence 78887877777789999999999999887554456789999999999999999999999999 99999998764221
Q ss_pred ceecccccccccCeeecCc
Q 007903 558 FLRGRTHSYYRLKFNCSSK 576 (585)
Q Consensus 558 ~~~~~a~~YYrlGF~~~~~ 576 (585)
.....++|+++||+..+.
T Consensus 400 -~~~a~~fY~k~GF~~~g~ 417 (441)
T PRK05279 400 -TTRTAHWFLERGFVPVDV 417 (441)
T ss_pred -cchHHHHHHHCcCEECCh
Confidence 122334566899998765
No 4
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-56 Score=445.65 Aligned_cols=260 Identities=38% Similarity=0.616 Sum_probs=243.4
Q ss_pred cCCeEEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHH-HHHH
Q 007903 98 RGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAA 175 (585)
Q Consensus 98 r~k~iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~-~~~~ 175 (585)
|+|++|||+||+++.+++ ++.+++||++|+..|.++|||||||||+++.|+++|++++|++|+|+||+++|+++ |++.
T Consensus 1 ~~k~~VIK~GG~~~~~~~l~~~~~~di~lL~~~G~~~VvVHGggp~I~~~l~~~gie~~f~~glRvTd~~tlevv~mvl~ 80 (265)
T COG0548 1 RGKTIVIKLGGSAMEDENLLEAFASDIALLKSVGIRPVVVHGGGPQIDEMLAKLGIEPEFVKGLRVTDAETLEVVEMVLG 80 (265)
T ss_pred CCceEEEEECceeecCchHHHHHHHHHHHHHHCCCcEEEEeCCchHHHHHHHHcCCCCeeeCCEEcCCHHHHHHHHHHHH
Confidence 579999999999999988 89999999999999999999999999999999999999999999999999999998 7888
Q ss_pred hHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcCCCeEE
Q 007903 176 GGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVI 255 (585)
Q Consensus 176 G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~G~IPV 255 (585)
|++|+.|++.| +++|.+ ++++++.||+++.|++++..+++||||+|+|+++|++.|+.+|++|+|||
T Consensus 81 G~vNk~iva~l---------~~~g~~----avGlsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn~~~i~~ll~~~~IpV 147 (265)
T COG0548 81 GTVNKEIVARL---------SKHGGQ----AVGLSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVNPELIERLLDNGAIPV 147 (265)
T ss_pred HHHHHHHHHHH---------HHhCCc----ceeeeecCCCEEEEEEcccccccccceeeeEEEECHHHHHHHHhCCCceE
Confidence 89999999965 778875 89999999999999999888889999999999999999999999999999
Q ss_pred EcCCccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccC-CCCc--ccccccHHHHHHHHHhhchhhhHHHHHHhh
Q 007903 256 LSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGH--LIRFLTLQEADSLIRQRVKQSEIAANYVKA 332 (585)
Q Consensus 256 i~~v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~-~~~~--lI~~it~~e~~~li~~~~~~~~~~~~~~~~ 332 (585)
++|++++++|+.+|+|+|++|+++|.+|+|+|||+|||++|+. ..+. +|++++.+|+++++.++.
T Consensus 148 iapia~~~~G~~~NvnaD~~A~~iA~aLkAekLi~ltdv~Gvl~~~~~~s~i~~~~~~~~~~li~~~~------------ 215 (265)
T COG0548 148 IAPIAVDEDGETLNVNADTAAGALAAALKAEKLILLTDVPGVLDDKGDPSLISELDAEEAEELIEQGI------------ 215 (265)
T ss_pred EecceECCCCcEEeeCHHHHHHHHHHHcCCCeEEEEeCCcccccCCCCceeeccCCHHHHHHHHhcCC------------
Confidence 9999999999999999999999999999999999999999984 3343 999999999999987632
Q ss_pred hhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccCcHHHHHHHHHHHH
Q 007903 333 VAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCR 412 (585)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~kl~aa~~a~~ 412 (585)
++ | | |.+||++|+.||+
T Consensus 216 -----------------i~------------------------~-G---------------------Mi~Kv~~a~~A~~ 232 (265)
T COG0548 216 -----------------IT------------------------G-G---------------------MIPKVEAALEALE 232 (265)
T ss_pred -----------------cc------------------------C-c---------------------cHHHHHHHHHHHH
Confidence 22 4 5 8999999999999
Q ss_pred cCCCeEEEecCccchhhHHHHHhcCCCceeecc
Q 007903 413 RGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (585)
Q Consensus 413 ~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~~ 445 (585)
.||++|||+||+.+++||+|||+++++||++.+
T Consensus 233 ~Gv~~v~ii~g~~~~~ll~eLFt~~giGT~i~~ 265 (265)
T COG0548 233 SGVRRVHIISGRVPHSLLLELFTRDGIGTMIVR 265 (265)
T ss_pred hCCCeEEEecCCCcchHHHHHhcCCCcceEecC
Confidence 999999999999999999999999999999863
No 5
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=3.3e-54 Score=442.89 Aligned_cols=278 Identities=51% Similarity=0.796 Sum_probs=254.2
Q ss_pred HHHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCChHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCcc
Q 007903 82 QFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYR 161 (585)
Q Consensus 82 ~~~~~~r~a~~yi~~~r~k~iVIKlGGs~l~~~~l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~r 161 (585)
+|++|||+++|||++||++++|||+||+++.+++++.++++|+.|++.|+++|||||||||++++++++|+++++++|+|
T Consensus 1 ~~~~~~~~~~~yi~~~~~~~~VIKlGG~ai~~~~l~~~~~~ia~l~~~g~~~ViVHGggp~i~~~~~~~gi~~~~~~G~R 80 (280)
T cd04237 1 QFVDWFREAAPYINAHRGKTFVIAFGGEAVAHPNFDNIVHDIALLHSLGIRLVLVHGARPQIDQRLAERGLEPRYHRGLR 80 (280)
T ss_pred ChHHHHHHHhHHHHHhCCCEEEEEEChHHhcCchHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCccccCCcC
Confidence 69999999999999999999999999999998788999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchhHHhcCCCC-cceeEEeeecCcceeeeeeccccccccCcceeeEEEec
Q 007903 162 ITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSS-RWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVD 240 (585)
Q Consensus 162 vt~~~~l~~~~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~-~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~ 240 (585)
+|++++|+++.+++|++|+.|++.|+. |++. +++..++++.|++++.++++++.++.|||++|+++.+|
T Consensus 81 vT~~~~l~~~~~~~g~v~~~l~~~l~~----------~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~G~v~~v~ 150 (280)
T cd04237 81 ITDAAALECVKEAAGAVRLEIEALLSM----------GLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRID 150 (280)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHh----------hccccCcCCCceEEecCeEEEEEECCcccCceEeeeccEEEEc
Confidence 999999999865679999999987632 4431 22234678889999999999888889999999999999
Q ss_pred HHHHHHHHcCCCeEEEcCCccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccC-CCCcccccccHHHHHHHHHhh
Q 007903 241 VTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEADSLIRQR 319 (585)
Q Consensus 241 ~~~I~~lL~~G~IPVi~~v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~-~~~~lI~~it~~e~~~li~~~ 319 (585)
.+.|++||++|+|||++|++++.+|+.+|+|+|++|++||.+|+||+|+|+||+||+. .++++|++++.+|+++++..+
T Consensus 151 ~~~i~~lL~~g~ipv~~~~g~~~~g~~lnvnaD~~A~~LA~~L~a~klv~ltdv~GV~~~~~~~i~~i~~~e~~~l~~~~ 230 (280)
T cd04237 151 ADAIRRQLDQGSIVLLSPLGYSPTGEVFNLSMEDVATAVAIALKADKLIFLTDGPGLLDDDGELIRELTAQEAEALLETG 230 (280)
T ss_pred HHHHHHHHHCCCEEEECCceECCCCCEEeeCHHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCccccCCHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999985 479999999999999998653
Q ss_pred chhhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccC
Q 007903 320 VKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNG 399 (585)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~ 399 (585)
. + -+| |
T Consensus 231 ~-----------------------------~-----------------------~~g-g--------------------- 236 (280)
T cd04237 231 A-----------------------------L-----------------------LTN-D--------------------- 236 (280)
T ss_pred C-----------------------------C-----------------------CCC-C---------------------
Confidence 2 1 024 5
Q ss_pred cHHHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceee
Q 007903 400 YLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (585)
Q Consensus 400 m~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i 443 (585)
|.+||++|.+|+++|++++||+|++.+++|+.|+|+++|.||+|
T Consensus 237 M~~Kv~~a~~a~~~Gv~~v~I~~~~~~~~ll~elft~~g~GT~i 280 (280)
T cd04237 237 TARLLQAAIEACRGGVPRVHLISYAEDGALLLELFTRDGVGTLI 280 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCCCcC
Confidence 99999999999999999999999999999999999999999985
No 6
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=100.00 E-value=4e-53 Score=435.86 Aligned_cols=274 Identities=27% Similarity=0.460 Sum_probs=252.1
Q ss_pred hhHHHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccC
Q 007903 80 DEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLG 158 (585)
Q Consensus 80 ~~~~~~~~r~a~~yi~~~r~k~iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~ 158 (585)
.++++++||+++|||++||++++|||+||+++.+++ .+.+++||+.|+..|.++||||||||++++.++++|++++|++
T Consensus 4 ~~~~~~~~~~~~pyi~~~~~~~~VIk~gG~~~~~~~l~~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~ 83 (284)
T CHL00202 4 NDERVQVLSEALPYIQKFRGRIMVIKYGGAAMKNLILKADIIKDILFLSCIGLKIVVVHGGGPEINFWLKQLNISPKFWN 83 (284)
T ss_pred hHHHHHHHHHHHHHHHHHcCCeEEEEEChHHhcCcchHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHCCCCCEeEC
Confidence 347899999999999999999999999999998876 5699999999999999999999999999999999999999999
Q ss_pred CccCCCHHHHHHH-HHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEE
Q 007903 159 RYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVK 237 (585)
Q Consensus 159 g~rvt~~~~l~~~-~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~ 237 (585)
|+|+|++++|+++ ++++|++|.+|++.| .++|++ ++++++.|++++++++. ++.|++++|+++
T Consensus 84 G~rvT~~~~l~~~~~~l~g~ln~~lv~~L---------~~~Gv~----av~l~~~d~~~i~a~~~---~~~d~~~~G~i~ 147 (284)
T CHL00202 84 GIRVTDKVTMEIVEMVLAGKVNKDLVGSI---------NANGGK----AVGLCGKDANLIVARAS---DKKDLGLVGEIQ 147 (284)
T ss_pred CcccCCHHHHHHHHHHHhhHHHHHHHHHH---------HhCCCC----eeeeeeccCCEEEEEeC---CCcccccceeEE
Confidence 9999999999998 678899999999965 678887 89999999999999874 557899999999
Q ss_pred EecHHHHHHHHcCCCeEEEcCCccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccCC----CCcccccccHHHHH
Q 007903 238 KVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDE----SGHLIRFLTLQEAD 313 (585)
Q Consensus 238 ~v~~~~I~~lL~~G~IPVi~~v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~~----~~~lI~~it~~e~~ 313 (585)
.+|.+.|+.+|+.|+|||++|++++.+|+.+|+|+|++|++||.+|+||+|+|+||+||+.. .+++|++++.+|++
T Consensus 148 ~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~ni~~D~~A~~lA~~l~Ad~li~lTdv~Gv~~~~~d~~~~i~~i~~~e~~ 227 (284)
T CHL00202 148 QVDPQLIDMLLEKNYIPVIASVAADHDGQTYNINADVVAGEIAAKLNAEKLILLTDTPGILADINDPNSLISTLNIKEAR 227 (284)
T ss_pred ecCHHHHHHHHHCCCEEEECCCccCCCCcEEecCHHHHHHHHHHHhCCCEEEEEeCChhhcCCCCCCCCccccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999842 37899999999988
Q ss_pred HHHHhhchhhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccc
Q 007903 314 SLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQER 393 (585)
Q Consensus 314 ~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~ 393 (585)
+++..+. + +| |
T Consensus 228 ~l~~~g~-----------------------------~------------------------tG-G--------------- 238 (284)
T CHL00202 228 NLASTGI-----------------------------I------------------------SG-G--------------- 238 (284)
T ss_pred HHHhcCC-----------------------------C------------------------CC-C---------------
Confidence 8864311 2 35 5
Q ss_pred cccccCcHHHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeec
Q 007903 394 LSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (585)
Q Consensus 394 ~~~~~~m~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~ 444 (585)
|.+||++|..|++.|++++||+||+.+++||.|+|++++.||+|.
T Consensus 239 ------M~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~g~GT~i~ 283 (284)
T CHL00202 239 ------MIPKVNCCIRALAQGVEAAHIIDGKEKHALLLEILTEKGIGSMLV 283 (284)
T ss_pred ------HHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHhcCCCCceEEe
Confidence 899999999999999999999999999999999999999999985
No 7
>PLN02512 acetylglutamate kinase
Probab=100.00 E-value=2.1e-50 Score=419.91 Aligned_cols=275 Identities=29% Similarity=0.487 Sum_probs=252.3
Q ss_pred hhHHHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccC
Q 007903 80 DEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLG 158 (585)
Q Consensus 80 ~~~~~~~~r~a~~yi~~~r~k~iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~ 158 (585)
...|++|||+++|||++||++++||||||+++++++ ...++++|+.|+..|.++|||||||++++++++++|+++++.+
T Consensus 28 ~~~~~~~~r~~~pyi~~~~~~tiVIKlGGs~i~d~~~~~~~~~di~~l~~~g~~iVlVHGgG~~i~~~~~~~gi~~~~~~ 107 (309)
T PLN02512 28 NLSRVDILSEALPFIQRFRGKTVVVKYGGAAMKDPELKAGVIRDLVLLSCVGLRPVLVHGGGPEINSWLKKVGIEPQFKN 107 (309)
T ss_pred hHHHHHHHHHHhHHHHHHCCCeEEEEECCeeccChhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcCCCCcCCC
Confidence 348999999999999999999999999999999877 4679999999999999999999999999999999999999999
Q ss_pred CccCCCHHHHHHH-HHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEE
Q 007903 159 RYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVK 237 (585)
Q Consensus 159 g~rvt~~~~l~~~-~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~ 237 (585)
|+|+|++++++++ ++++|++|.+|++. |+++|++ ++++++.|++++++++++ ++.|++++|+++
T Consensus 108 G~rvT~~~~lei~~~~l~g~ln~~lv~~---------L~~~Gv~----av~l~g~d~~~i~a~~~~--~~~~~~~~G~i~ 172 (309)
T PLN02512 108 GLRVTDAETMEVVEMVLVGKVNKSLVSL---------INKAGGT----AVGLSGKDGRLLRARPSP--NSADLGFVGEVT 172 (309)
T ss_pred CCcCCCHHHHHHHHHHHhhHHHHHHHHH---------HHHcCCC----eEEeehhhCCEEEEEEcC--cCccccccceee
Confidence 9999999999998 67789999999986 4789987 899999999999998862 446899999999
Q ss_pred EecHHHHHHHHcCCCeEEEcCCccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccC----CCCcccccccHHHHH
Q 007903 238 KVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD----ESGHLIRFLTLQEAD 313 (585)
Q Consensus 238 ~v~~~~I~~lL~~G~IPVi~~v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~----~~~~lI~~it~~e~~ 313 (585)
.++.+.|+.+|+.|+|||++|++++++|+.+|+|+|++|++||.+|+||+|+|+|||||++ +++++|++++.+|++
T Consensus 173 ~v~~~~i~~lL~~g~IPVi~~~~~d~~g~~~~i~~D~~A~~lA~~L~Ad~li~lTdV~GV~~~~~~~~~lI~~i~~~e~~ 252 (309)
T PLN02512 173 RVDPTVLRPLVDDGHIPVIATVAADEDGQAYNINADTAAGEIAAALGAEKLILLTDVAGVLEDKDDPGSLVKELDIKGVR 252 (309)
T ss_pred ecCHHHHHHHHhCCCEEEEeCceECCCCCEeccCHHHHHHHHHHHcCCCEEEEEeCCcceeCCCCCCcCCCcccCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999984 358999999999988
Q ss_pred HHHHhhchhhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccc
Q 007903 314 SLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQER 393 (585)
Q Consensus 314 ~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~ 393 (585)
+++..+. + +| |
T Consensus 253 ~l~~~~~-----------------------------v------------------------tG-G--------------- 263 (309)
T PLN02512 253 KLIADGK-----------------------------I------------------------AG-G--------------- 263 (309)
T ss_pred HHHhCCC-----------------------------C------------------------CC-c---------------
Confidence 8864311 2 35 5
Q ss_pred cccccCcHHHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeec
Q 007903 394 LSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (585)
Q Consensus 394 ~~~~~~m~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~ 444 (585)
|.+||++|..+++.|++++||+||..++.|+.++|++++.||+|.
T Consensus 264 ------M~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~ 308 (309)
T PLN02512 264 ------MIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEILTDEGAGTMIT 308 (309)
T ss_pred ------HHHHHHHHHHHHHcCCCEEEEecCCCCChHHHHHhcCCCCeeEEe
Confidence 899999999999999999999999999999999999999999985
No 8
>PRK00942 acetylglutamate kinase; Provisional
Probab=100.00 E-value=7e-49 Score=404.76 Aligned_cols=276 Identities=34% Similarity=0.549 Sum_probs=253.0
Q ss_pred hHHHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCC
Q 007903 81 EQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGR 159 (585)
Q Consensus 81 ~~~~~~~r~a~~yi~~~r~k~iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g 159 (585)
..+++|||+++|||++||++++|||+||+++++++ ++.++++|+.|++.|.++|||||+|++++++++++++++++.+|
T Consensus 5 ~~~~~~~r~~~~yi~~~~~~~iViK~GGs~l~~~~~~~~l~~~i~~l~~~g~~vVlVhGgg~~~~~~~~~~g~~~~~~~g 84 (283)
T PRK00942 5 LEKAEVLSEALPYIQRFMGKTIVIKYGGNAMTDEELKEAFARDIVLLKQVGINPVVVHGGGPQIDELLKKLGIESEFVNG 84 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEChHHhcCcchHHHHHHHHHHHHHCCCCEEEEeCChHHHHHHHHHCCCCcEeeCC
Confidence 47999999999999999999999999999999877 68899999999999999999999999999999999999999999
Q ss_pred ccCCCHHHHHHH-HHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEE
Q 007903 160 YRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKK 238 (585)
Q Consensus 160 ~rvt~~~~l~~~-~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~ 238 (585)
+|+|++++|+.+ ++++|++|..+++. |+++|++ ++++++.|++++++++. .+++||+++|+++.
T Consensus 85 ~~~t~~~~l~~~~~a~~G~l~~~i~~~---------L~~~Gv~----a~~l~~~~~~~~ta~~~--~~~~~~~~~g~i~~ 149 (283)
T PRK00942 85 LRVTDAETMEVVEMVLAGKVNKELVSL---------INKHGGK----AVGLSGKDGGLITAKKL--EEDEDLGFVGEVTP 149 (283)
T ss_pred EecCCHHHHHHHHHHHcCchHHHHHHH---------HHhCCCC----ccceeeccCCEEEEEEC--CCCCCCccccceEE
Confidence 999999999987 45559999999875 4788987 78999999999999876 67789999999999
Q ss_pred ecHHHHHHHHcCCCeEEEcCCccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccC-CCCcccccccHHHHHHHHH
Q 007903 239 VDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEADSLIR 317 (585)
Q Consensus 239 v~~~~I~~lL~~G~IPVi~~v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~-~~~~lI~~it~~e~~~li~ 317 (585)
+|.+.|+++|++|.|||++|++++++|+++|+|+|.+|++||.+|+||+|+|+|||||+. .++++|++++.+|+++++.
T Consensus 150 i~~~~l~~ll~~g~vpVv~~~~~~~~g~~~~l~~D~~A~~lA~~l~A~~li~~tdv~Gv~~~~~~~i~~i~~~e~~~~~~ 229 (283)
T PRK00942 150 VNPALLEALLEAGYIPVISPIGVGEDGETYNINADTAAGAIAAALGAEKLILLTDVPGVLDDKGQLISELTASEAEELIE 229 (283)
T ss_pred ECHHHHHHHHHCCCEEEEcCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCcccccCCCcccccCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999985 4699999999999888864
Q ss_pred hhchhhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccc
Q 007903 318 QRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRL 397 (585)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~ 397 (585)
.+. + +| |
T Consensus 230 ~~~-----------------------------~------------------------tg-g------------------- 236 (283)
T PRK00942 230 DGV-----------------------------I------------------------TG-G------------------- 236 (283)
T ss_pred cCC-----------------------------C------------------------CC-c-------------------
Confidence 311 1 24 5
Q ss_pred cCcHHHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeeccc
Q 007903 398 NGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (585)
Q Consensus 398 ~~m~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~~d 446 (585)
|.+||++|..+++.|+.+++|+||..++.||.++|++++.||+|.++
T Consensus 237 --m~~Kl~~a~~~~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 283 (283)
T PRK00942 237 --MIPKVEAALDAARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVPD 283 (283)
T ss_pred --hHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEecC
Confidence 89999999999999999999999999999999999999999999764
No 9
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=100.00 E-value=2.1e-47 Score=392.96 Aligned_cols=269 Identities=32% Similarity=0.535 Sum_probs=246.4
Q ss_pred HHHhhhHHHhhcCCeEEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCH
Q 007903 87 FREAWPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDS 165 (585)
Q Consensus 87 ~r~a~~yi~~~r~k~iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~ 165 (585)
+|+|+|||++||++++||||||+++++++ .+.++++|+.|++.|.++|||||||+++++.+++++++.++.+|+|+|++
T Consensus 2 ~~~~~~yi~~~~~~~~ViKlGGs~i~~~~~~~~~~~~i~~l~~~g~~~ViVhG~g~~~~~~l~~~g~~~~~~~g~r~t~~ 81 (279)
T cd04250 2 LIEALPYIQKFRGKTVVIKYGGNAMKDEELKESFARDIVLLKYVGINPVVVHGGGPEINEMLKKLGIESEFVNGLRVTDE 81 (279)
T ss_pred hhhhhHHHHHHcCCEEEEEEChHHhcCccHHHHHHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHCCCCCEeECCeecCCH
Confidence 79999999999999999999999999876 67999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccc---cccccCcceeeEEEecH
Q 007903 166 ESLAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGV---VDGVDYGATGEVKKVDV 241 (585)
Q Consensus 166 ~~l~~~-~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~---~~g~d~g~~G~v~~v~~ 241 (585)
++++++ ++++|++|..|++. |+++|++ ++++++.|++++++++.+. ++++||+++|+++.++.
T Consensus 82 ~~~~~~~~~~~g~ln~~l~~~---------L~~~Gv~----a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~ 148 (279)
T cd04250 82 ETMEIVEMVLVGKVNKEIVSL---------INRAGGK----AVGLSGKDGNLIKAKKKDATVIEEIIDLGFVGEVTEVNP 148 (279)
T ss_pred HHHHHHHHHHcCchHHHHHHH---------HHHcCCC----cceeecCCCCEEEEEECcccccCCCcccCcccceEEEcH
Confidence 999987 44458999999885 4778987 8999999999999999875 57889999999999999
Q ss_pred HHHHHHHcCCCeEEEcCCccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccCC----CCcccccccHHHHHHHHH
Q 007903 242 TRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDE----SGHLIRFLTLQEADSLIR 317 (585)
Q Consensus 242 ~~I~~lL~~G~IPVi~~v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~~----~~~lI~~it~~e~~~li~ 317 (585)
+.|+++|+.|.|||++|++++++|+.+|+|+|.+|++||.+|+||+|+|+|||||++. ++++|++++.+|+++++.
T Consensus 149 ~~i~~ll~~g~IPVi~~~~~~~~g~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~~~~~i~~i~~~e~~~l~~ 228 (279)
T cd04250 149 ELLETLLEAGYIPVIAPVGVGEDGETYNINADTAAGAIAAALKAEKLILLTDVAGVLDDPNDPGSLISEISLKEAEELIA 228 (279)
T ss_pred HHHHHHHHCCCeEEEcCCccCCCCcEEEeCHHHHHHHHHHHhCCCEEEEEECCcccccCCCCCccccccCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999842 389999999999888764
Q ss_pred hhchhhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccc
Q 007903 318 QRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRL 397 (585)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~ 397 (585)
.+. + +| |
T Consensus 229 ~~~-----------------------------~------------------------tG-g------------------- 235 (279)
T cd04250 229 DGI-----------------------------I------------------------SG-G------------------- 235 (279)
T ss_pred cCC-----------------------------C------------------------CC-c-------------------
Confidence 311 1 35 5
Q ss_pred cCcHHHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceee
Q 007903 398 NGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (585)
Q Consensus 398 ~~m~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i 443 (585)
|.+||++|..+++.|+.+|+|+||..+++||.++|++++.||+|
T Consensus 236 --m~~Kl~~a~~a~~~g~~~v~I~~g~~~~~ll~~~~~~~~~GT~i 279 (279)
T cd04250 236 --MIPKVEACIEALEGGVKAAHIIDGRVPHSLLLEIFTDEGIGTMI 279 (279)
T ss_pred --hHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCCccCC
Confidence 89999999999999999999999999999999999999999986
No 10
>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-47 Score=400.55 Aligned_cols=437 Identities=42% Similarity=0.591 Sum_probs=369.8
Q ss_pred ChhHHHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCChHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccC
Q 007903 79 EDEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLG 158 (585)
Q Consensus 79 ~~~~~~~~~r~a~~yi~~~r~k~iVIKlGGs~l~~~~l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~ 158 (585)
.+..++++++|++|||+.||++++||+.+|.++....++.++++++.|+..|.++|||||+++|+++++...++++.|.+
T Consensus 74 s~~~~v~~~~e~l~yi~~~~~q~fvV~~~g~~~~t~~~~sl~s~lafl~h~gl~pIvv~g~~~qin~~l~~~~ie~~y~~ 153 (520)
T KOG2436|consen 74 SSDTTVRILRESLPYITSFRDQKFVVIKSGEAISTSLLHSLASDLAFLHHVGLRPIVVPGTQPQINRLLAERGIEPEYVD 153 (520)
T ss_pred CChhHHHHHHHHHHHHHHhcCceEEEEecccccccchHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHcCCCccccc
Confidence 56789999999999999999999999999999855558999999999999999999999999999999999999999999
Q ss_pred CccCCCHHHHHHHH-HHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeec--CcceeeeeeccccccccCcceee
Q 007903 159 RYRITDSESLAAAM-EAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVA--SGNFLAAKRKGVVDGVDYGATGE 235 (585)
Q Consensus 159 g~rvt~~~~l~~~~-~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~--dg~~~~a~~~g~~~g~d~g~~G~ 235 (585)
++|+|++.+|+++. ..+++.|..++.. |+++|.. +++.++. .++++.|+++|++++.+|+++|+
T Consensus 154 ~~RvTda~t~q~~~~~~~~E~n~~lv~n---------L~~~g~~----ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~ge 220 (520)
T KOG2436|consen 154 GYRVTDAHTLQAAKESVSLEANLNLVIN---------LSQLGTR----ARPSSSGVRVGNFFPADRNGVLDGEDYGLVGE 220 (520)
T ss_pred ceecccHHHHHHhhhcchhhhhhHHHHH---------HHHhhce----eccccccccccceeecccccccccceeeeecc
Confidence 99999999999984 4778888776664 5778866 3333333 26799999999999999999999
Q ss_pred EEEecHHHHHHHHcCCCeEEEcCCccCCCCceeeeChHHHHHHHHHHcCCCEEEEeec-ccccCCCCcccccccHHHHHH
Q 007903 236 VKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIID-GPILDESGHLIRFLTLQEADS 314 (585)
Q Consensus 236 v~~v~~~~I~~lL~~G~IPVi~~v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTD-V~gl~~~~~lI~~it~~e~~~ 314 (585)
|.+++.+.|+.+++.|.+|++++++.+.+|+++|||+|++|.+||.+|+|+++++++| .++++++++.++.++.+|.+.
T Consensus 221 i~~vd~d~i~~l~~~G~mp~L~sla~TaSGqvlnvNa~~~a~elA~~L~~~kli~l~d~g~~l~e~ge~~S~l~l~~e~~ 300 (520)
T KOG2436|consen 221 IKKVDVDRIRHLLDAGSMPLLRSLAATASGQVLNVNADEVAGELALALGPDKLILLMDKGRILKENGEDISSLILQEEDA 300 (520)
T ss_pred cceechhhhhhhhhCCCchhehhhcccCccceEEeeHHHHhhHHHhccCcceeEEecccccccccCcccccccccchhHh
Confidence 9999999999999999999999999999999999999999999999999999999999 557789999999999999999
Q ss_pred HHHhhchhhhHHHHHHhhhhcccccccC-CCCCCCcccccCC-CCccc--cchhccccCCccccCCCCCccccccccccc
Q 007903 315 LIRQRVKQSEIAANYVKAVAEEDITCFG-HSDSIGSVYSSQN-GKTFS--ERRIATFNNGVGFDNGNGLWSSEQGFAIGG 390 (585)
Q Consensus 315 li~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~ 390 (585)
+++....|+.+|+++++++-+.....+. +.++++.++.-.+ .++.. .....++++|.++..|+++|+..++||+++
T Consensus 301 ~l~k~~qq~~~a~~~v~aV~~~~~~~~p~~~s~~i~~~t~~n~~~~~~te~G~~t~~~~gv~~~k~~sl~~~~~~~al~~ 380 (520)
T KOG2436|consen 301 GLRKPSQQKNIAANNVKAVKDGIDSSLPRPSSYNIAITTQQNLIKELFTEKGAGTLISGGVGINKGNSLISQSFKRALDL 380 (520)
T ss_pred hhhhhhhhcccccccchhhhhheeeccCcCCCCCcceeecccccceeeccCCCCccccCceeeecCcccccchhhhhcch
Confidence 9999999999999999999877655222 2223455332111 12222 337889999999999999999999999999
Q ss_pred ccccccccCcHHHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeeccccccccccccccCHHHHHHHHHHHH
Q 007903 391 QERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLV 470 (585)
Q Consensus 391 ~~~~~~~~~m~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~~d~~~~IR~at~~D~~~I~~Li~~~~ 470 (585)
+++++|.+|.++++.+|-+.|..++++++..||+..++++++.|.+.+.||+. .+-+..++.+-.+|+++|....++..
T Consensus 381 ~~~~~rln~~lse~i~a~~~~~~~i~~~~~~D~~~e~V~~ldkf~~~~~~~~~-~~V~d~ifn~~~~dfp~i~wr~r~~~ 459 (520)
T KOG2436|consen 381 EEYIDRLNGSLSELIAAGDYCGGAIKTYELSDGTNEGVLYLDKFAVSGMGTGS-SDVSDGIFNVMVEDFPEILWRSRPLN 459 (520)
T ss_pred HHHHHHhhchHHHHHHHHHHhccceEEEEccCCCcccceeeeecccCCccccc-chhhHHHHHHHHHhhhhheeeccccc
Confidence 99999999999999999999999999999999999999999999999999998 67777889999999998877655544
Q ss_pred Hcccc-ccCCHHHHHhccCeEEEEEECCeEEEEEEEeeeccCCceEEeeEEEccCCcCCcHHHHHH
Q 007903 471 ESGAL-VRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLL 535 (585)
Q Consensus 471 ~~~~~-~~~~~e~l~~~i~~~~Va~~dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkGIGk~LL 535 (585)
..... ..++.+.+. ..+.+++.+-+++++.++.+.++. ++..+.|.++.|+++.+.+++
T Consensus 460 ~~~~w~f~rs~g~L~-~~~~~lfwyg~~~i~~~a~~~~~~-----~v~~~~~~~d~~~s~~n~k~~ 519 (520)
T KOG2436|consen 460 EVNKWYFRRSEGSLR-ALDFKLFWYGEGQIIKCAALFQFF-----EVAAMSVASDIRPSWQNDKLL 519 (520)
T ss_pred ccceEEEeccHHHHh-ccCcEEEEecCcHHHHHHHhhhhh-----HHHHhhhccccCccccCCCCC
Confidence 43322 223333333 446667777888999988887543 577888999999988776553
No 11
>PRK04531 acetylglutamate kinase; Provisional
Probab=100.00 E-value=2.8e-43 Score=376.08 Aligned_cols=316 Identities=22% Similarity=0.258 Sum_probs=253.0
Q ss_pred CCCCChhHHHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCChHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcc
Q 007903 75 YNPVEDEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEA 154 (585)
Q Consensus 75 ~~~~~~~~~~~~~r~a~~yi~~~r~k~iVIKlGGs~l~~~~l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~ 154 (585)
|++++..+|+++||++.|| +++|||+||+++.+ .++.++++|++|+..|.++|||||||||+++.++++|+++
T Consensus 18 ~~~~e~~~~l~~F~~~~~~------~~~VIKiGG~~l~~-~~~~l~~dla~L~~~G~~~VlVHGggpqI~~~l~~~gie~ 90 (398)
T PRK04531 18 ASAKEISQYLKRFSQLDAE------RFAVIKVGGAVLRD-DLEALASSLSFLQEVGLTPIVVHGAGPQLDAELDAAGIEK 90 (398)
T ss_pred CChhhhHHHHHHHhCcCCC------cEEEEEEChHHhhc-CHHHHHHHHHHHHHCCCcEEEEECCCHHHHHHHHHcCCCc
Confidence 5556667777777777766 99999999999985 4899999999999999999999999999999999999999
Q ss_pred cccCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCccee
Q 007903 155 KYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATG 234 (585)
Q Consensus 155 ~~~~g~rvt~~~~l~~~~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G 234 (585)
+|++|+|+|++++|+++..+.+++|..|++
T Consensus 91 ~~v~G~RVTd~~tl~vv~~~l~~vn~~lv~-------------------------------------------------- 120 (398)
T PRK04531 91 ETVNGLRVTSPEALAIVRKVFQRSNLDLVE-------------------------------------------------- 120 (398)
T ss_pred EEECCEecCCHHHHHHHHHHHHHHHHHHHH--------------------------------------------------
Confidence 999999999999999986666687765533
Q ss_pred eEEEecHHHHHHHHcCCCeEEEcCCccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccC-CCCcccccccH-HHH
Q 007903 235 EVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTL-QEA 312 (585)
Q Consensus 235 ~v~~v~~~~I~~lL~~G~IPVi~~v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~-~~~~lI~~it~-~e~ 312 (585)
.|+.+|+.|+|||++|++.+++|+++|+|+|.+|++||.+|+|+||||+||++|+. .+|++|++++. +++
T Consensus 121 --------~I~~~L~~g~IPVlsplg~~~~G~~~NvnaD~vA~~LA~aL~a~KLIfltdv~GV~d~~g~~i~~i~~~~e~ 192 (398)
T PRK04531 121 --------AVESSLRAGSIPVIASLGETPSGQILNINADVAANELVSALQPYKIIFLTGTGGLLDADGKLISSINLSTEY 192 (398)
T ss_pred --------HHHHHHHCCCEEEEeCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCCCCCCcccCCHHHHH
Confidence 17789999999999999999999999999999999999999999999999999984 68999999997 577
Q ss_pred HHHHHhhchhhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCccccccccccccc
Q 007903 313 DSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQE 392 (585)
Q Consensus 313 ~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~ 392 (585)
+.++..+ .++ | |
T Consensus 193 ~~l~~~~-----------------------------~vt------------------------g-G-------------- 204 (398)
T PRK04531 193 DHLMQQP-----------------------------WIN------------------------G-G-------------- 204 (398)
T ss_pred HHHHhcC-----------------------------CCC------------------------c-c--------------
Confidence 7776431 122 4 5
Q ss_pred ccccccCcHHHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeeccccc-cccccccccCHHHHHHHHHHHHH
Q 007903 393 RLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLY-EGTRTAKVTDLSGIKQIIQPLVE 471 (585)
Q Consensus 393 ~~~~~~~m~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~~d~~-~~IR~at~~D~~~I~~Li~~~~~ 471 (585)
|.+||++|..+++ +++++|+++++.+++|+.|||+++|.||+|.+... ...+....-|.+.+.+++.
T Consensus 205 -------M~~KL~~a~~al~-~~~~~~~V~i~~~~~Ll~eLft~~G~GT~I~~g~~i~~~~~~~~~d~~~l~~ll~---- 272 (398)
T PRK04531 205 -------MKLKLEQIKELLD-RLPLESSVSITSPSDLAKELFTHKGSGTLVRRGERILRATDWDELDLERLNLLIE---- 272 (398)
T ss_pred -------HHHHHHHHHHHHh-CCCcEEEEEecCCCHHHHHHccCCCCCeEEecCCceeeeCChhhcCHHHHHHHHh----
Confidence 8999999999996 46679999999999999999999999999988643 2223333448888888852
Q ss_pred ccccccCCHHHHHhccCeEEEEEECCeEEEEEEEeeeccCCceEEeeEEEccCCcCCcHHHHHHHHHH
Q 007903 472 SGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCI 539 (585)
Q Consensus 472 ~~~~~~~~~e~l~~~i~~~~Va~~dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~ 539 (585)
..+..... +.+.+.. ..+-+..++..=|.+.+. ..+...++..++|.+..||.|++..+++.+.
T Consensus 273 ~sf~r~~~-~~y~~~~-~~~~~y~~~~y~~~Aiv~--~~~~~~~Ldkf~v~~~~~~~~v~d~vf~~~~ 336 (398)
T PRK04531 273 SSFGRTLK-PDYFDTT-QLLRAYVSENYRAAAILT--ETGGGPYLDKFAVLDDARGEGLGRAVWNVMR 336 (398)
T ss_pred hhcccchH-HHHhccC-CceEEEEeCCCcEEEEEe--cCCCceEeEEEEEccchhhcChHHHHHHHHH
Confidence 22221111 2222222 222233344444454444 2356889999999999999999999999998
No 12
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=100.00 E-value=2.2e-43 Score=357.00 Aligned_cols=243 Identities=27% Similarity=0.403 Sum_probs=216.1
Q ss_pred EEEeCCccCCCCChHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHHHHHHhHHHHHH
Q 007903 103 VVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMI 182 (585)
Q Consensus 103 VIKlGGs~l~~~~l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~~~G~i~~~L 182 (585)
|||+||+++++. ++.+++||+.|+..|.++|||||||+|+++.++++|++++|++|+|+|++++|+.+..+++++|..|
T Consensus 2 ViKiGG~~~~~~-l~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~g~RvT~~~~l~~v~~al~~vn~~i 80 (248)
T cd04252 2 VIKVGGAIIEDD-LDELAASLSFLQHVGLYPIVVHGAGPQLNEELEAAGVEPEYVDGLRVTDPETLAVARKVFLEENLKL 80 (248)
T ss_pred EEEEChhhhhcc-HHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCcEeeCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 899999999875 8999999999999999999999999999999999999999999999999999999977778999999
Q ss_pred HHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcCCCeEEEcCCccC
Q 007903 183 EAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYS 262 (585)
Q Consensus 183 ~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~G~IPVi~~v~~~ 262 (585)
++.| .++|++ ++++++ + ++.+++ .++.|||++|+|+++|.+.|+.+|+.|+|||++|++++
T Consensus 81 v~~l---------~~~g~~----a~~l~~--~-~~~a~~---~~~~d~g~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~~ 141 (248)
T cd04252 81 VEAL---------ERNGAR----ARPITS--G-VFEAEY---LDKDKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAET 141 (248)
T ss_pred HHHH---------HhCCCC----cccccC--c-eEEEEE---CcCccCCccCceeeECHHHHHHHHHCCCeEEECCceEC
Confidence 9864 678887 677764 2 557766 46789999999999999999999999999999999999
Q ss_pred CCCceeeeChHHHHHHHHHHcCCCEEEEeecccccC-CCCcccccccH-HHHHHHHHhhchhhhHHHHHHhhhhcccccc
Q 007903 263 SSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTL-QEADSLIRQRVKQSEIAANYVKAVAEEDITC 340 (585)
Q Consensus 263 ~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~-~~~~lI~~it~-~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~ 340 (585)
++|+++|+|+|++|++||.+|+|++|||+||+||+. .++++|++++. +++++++..+
T Consensus 142 ~~g~~~nvnaD~~A~~lA~aL~a~kli~ltdv~GV~~~~g~~i~~i~~~~~~~~l~~~~--------------------- 200 (248)
T cd04252 142 PSGQLLNVNADVAAGELARVLEPLKIVFLNETGGLLDGTGKKISAINLDEEYDDLMKQP--------------------- 200 (248)
T ss_pred CCCCEEEECHHHHHHHHHHHcCCCeEEEEECCcccCCCCCCcccccCHHHHHHHHHHcC---------------------
Confidence 999999999999999999999999999999999985 46899999997 4677777431
Q ss_pred cCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccCcHHHHHHHHHHHHc--CCCeE
Q 007903 341 FGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRR--GVQRV 418 (585)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~kl~aa~~a~~~--Gv~~v 418 (585)
.+| | | |.+||++|..+.+. |+..+
T Consensus 201 --------~vt------------------------g-G---------------------M~~Kl~~~~~~~~~~~~~~~v 226 (248)
T cd04252 201 --------WVK------------------------Y-G---------------------TKLKIKEIKELLDTLPRSSSV 226 (248)
T ss_pred --------CcC------------------------C-c---------------------hHHHHHHHHHHHHhCCCceEE
Confidence 133 5 5 89999988888877 67778
Q ss_pred EEecCccchhhHHHHHhcCCCceee
Q 007903 419 HLLDGTIGGVLLLELFKRDGMGTMV 443 (585)
Q Consensus 419 ~I~~g~~~~~ll~el~~~~~~GT~i 443 (585)
+|++ +++|+.|||+++|.||+|
T Consensus 227 ~i~~---~~~ll~elf~~~g~GT~i 248 (248)
T cd04252 227 SITS---PDDLQKELFTHSGAGTLI 248 (248)
T ss_pred EEEC---CchHHHHHhcCCCCCccC
Confidence 8888 588999999999999986
No 13
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=6.3e-42 Score=348.18 Aligned_cols=253 Identities=32% Similarity=0.525 Sum_probs=231.2
Q ss_pred EEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHHHHHH-hHHH
Q 007903 102 FVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAA-GGIR 179 (585)
Q Consensus 102 iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~~~-G~i~ 179 (585)
+|||+||+++++++ +..++++|+.|+..|.++|||||+|++++.++++++++.++.+++|+|++++|+.+..++ |++|
T Consensus 1 ~ViKlGGs~l~~~~~~~~~~~~i~~l~~~g~~~VlVhG~g~~~~~~~~~~~~~~~~~~~~r~t~~~~l~~~~~a~~g~ln 80 (256)
T cd04238 1 VVIKYGGSAMKDEELKEAFADDIVLLKQVGINPVIVHGGGPEINELLKRLGIESEFVNGLRVTDKETMEIVEMVLAGKVN 80 (256)
T ss_pred CEEEEChHHhcCccHHHHHHHHHHHHHHCCCCEEEECCCcHHHHHHHHHCCCCCEeECCeecCCHHHHHHHHHHHcCchH
Confidence 59999999999887 799999999999999999999999999999999999999999999999999999886565 9999
Q ss_pred HHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcCCCeEEEcCC
Q 007903 180 MMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL 259 (585)
Q Consensus 180 ~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~G~IPVi~~v 259 (585)
..|++. |+++|++ ++++++.|+++++++++| .+++||+|+|+++.++.+.|+.+|++|+|||++|+
T Consensus 81 ~~i~~~---------L~~~Gv~----a~~l~~~~~~~~~~~~~~-~~~~~~~~~g~i~~i~~~~l~~ll~~g~ipVv~~~ 146 (256)
T cd04238 81 KELVSL---------LNRAGGK----AVGLSGKDGGLIKAEKKE-EKDIDLGFVGEVTEVNPELLETLLEAGYIPVIAPI 146 (256)
T ss_pred HHHHHH---------HHhCCCC----CCCcccccCCEEEEEECC-CCCCCcccccceEEECHHHHHHHHHCCCEEEECCc
Confidence 999886 4778987 789999999999999988 88899999999999999999999999999999999
Q ss_pred ccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccCC-CCcccccccHHHHHHHHHhhchhhhHHHHHHhhhhcccc
Q 007903 260 GYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDE-SGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDI 338 (585)
Q Consensus 260 ~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~~-~~~lI~~it~~e~~~li~~~~~~~~~~~~~~~~~~~~~~ 338 (585)
+++++|+++|+|+|.+|++||.+|+||+|+|+|||+|++. ++++|++++.+|+++++..+.
T Consensus 147 ~~~~~g~~~~~~~D~~A~~lA~~l~a~~li~ltdv~Gv~~~~~~~i~~i~~~e~~~~~~~~~------------------ 208 (256)
T cd04238 147 AVDEDGETYNVNADTAAGAIAAALKAEKLILLTDVPGVLDDPGSLISELTPKEAEELIEDGV------------------ 208 (256)
T ss_pred EECCCCcEEEECHHHHHHHHHHHcCCCEEEEEeCCccccCCCCCccccCCHHHHHHHHHcCC------------------
Confidence 9999999999999999999999999999999999999854 589999999988888764211
Q ss_pred cccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccCcHHHHHHHHHHHHcCCCeE
Q 007903 339 TCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRV 418 (585)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~kl~aa~~a~~~Gv~~v 418 (585)
+ +| | |.+||++|..+++.|+.++
T Consensus 209 -----------~------------------------~g-g---------------------m~~Kl~~a~~~~~~g~~~v 231 (256)
T cd04238 209 -----------I------------------------SG-G---------------------MIPKVEAALEALEGGVRKV 231 (256)
T ss_pred -----------C------------------------CC-C---------------------hHHHHHHHHHHHHhCCCEE
Confidence 1 35 5 8999999999999999999
Q ss_pred EEecCccchhhHHHHHhcCCCceee
Q 007903 419 HLLDGTIGGVLLLELFKRDGMGTMV 443 (585)
Q Consensus 419 ~I~~g~~~~~ll~el~~~~~~GT~i 443 (585)
+|++|..++.|+.+++.+++.||+|
T Consensus 232 ~I~~g~~~~~l~~~l~~~~~~GT~i 256 (256)
T cd04238 232 HIIDGRVPHSLLLELFTDEGIGTMI 256 (256)
T ss_pred EEeCCCCCcHHHHHHhcCCCCCCCC
Confidence 9999999999999998778899986
No 14
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=100.00 E-value=5.4e-42 Score=348.30 Aligned_cols=254 Identities=19% Similarity=0.217 Sum_probs=211.6
Q ss_pred CCCChhHHHHHHHHhhhHHHhhcCCeEEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcc
Q 007903 76 NPVEDEQFVKWFREAWPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEA 154 (585)
Q Consensus 76 ~~~~~~~~~~~~r~a~~yi~~~r~k~iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~ 154 (585)
+++|.++|.+.|..+.|+- ..+.+|||+||+++.+++ ++++++||++|+..|.++||||||||+++..++ +.
T Consensus 15 ~~~e~~~~l~~f~~~~~~~---~~~f~VIK~GG~~~~~~~~~~~l~~dla~L~~lGl~~VlVHGggp~i~~~l~----~~ 87 (271)
T cd04236 15 DPREARYWLTQFQIAMPND---WPAFAVLEVDHSVFRSLEMVQSLSFGLAFLQRMDMKLLVVMGLSAPDGTNMS----DL 87 (271)
T ss_pred CHHHHHHHHHHhhccCCCC---CCCEEEEEEChhhhcCchhHHHHHHHHHHHHHCCCeEEEEeCCChHHhhhhc----CC
Confidence 3444555555555543331 126899999999997655 899999999999999999999999999998876 22
Q ss_pred cccCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCccee
Q 007903 155 KYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATG 234 (585)
Q Consensus 155 ~~~~g~rvt~~~~l~~~~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G 234 (585)
++.. +-+... +.|..|++.| +++|++ ++++++. ++++.|++ ..|+|++|
T Consensus 88 ~~~~-----------~~~v~~-~~n~~Lv~~L---------~~~G~~----A~gl~g~-~~~i~a~~-----~~d~g~vG 136 (271)
T cd04236 88 ELQA-----------ARSRLV-KDCKTLVEAL---------QANSAA----AHPLFSG-ESVLQAEE-----PEPGASKG 136 (271)
T ss_pred cchh-----------eehhHH-HHHHHHHHHH---------HhCCCC----eeeecCc-cceEEEEE-----cccCCccc
Confidence 2211 112334 7888888864 778887 8999987 58999987 25889999
Q ss_pred eEEEecHHHHHHHHcCCCeEEEcCCccCCCCceeeeChHHHHHHHHHHcCCCEEEEeeccccc-CCCCcccccccH-HHH
Q 007903 235 EVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DESGHLIRFLTL-QEA 312 (585)
Q Consensus 235 ~v~~v~~~~I~~lL~~G~IPVi~~v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl-~~~~~lI~~it~-~e~ 312 (585)
+|+++|.+.|+.+|++|+|||++|+++|.+|+++|+|+|++|++||.+|+|+||||+||++|+ +.++++|++++. +|+
T Consensus 137 ~V~~Vd~~~I~~lL~~g~IPVisplg~~~~G~~~NiNaD~~A~~lA~aL~A~KLIfltd~~GV~~~~g~lI~~l~~~~e~ 216 (271)
T cd04236 137 PSVSVDTELLQWCLGSGHIPLVCPIGETSSGRSVSLDSSEVTTAIAKALQPIKVIFLNRSGGLRDQKHKVLPQVHLPADL 216 (271)
T ss_pred eEEEECHHHHHHHHhCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcceECCCCCCccccCcHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 567999999995 899
Q ss_pred HHHHHhhchhhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCccccccccccccc
Q 007903 313 DSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQE 392 (585)
Q Consensus 313 ~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~ 392 (585)
++|++++. ++ | ||.+|
T Consensus 217 ~~li~~g~-----------------------------i~------------------------g-Gm~~k---------- 232 (271)
T cd04236 217 PSLSDAEW-----------------------------LS------------------------E-TEQNR---------- 232 (271)
T ss_pred HHHHhCCE-----------------------------Ec------------------------C-Ceeec----------
Confidence 99997643 43 5 63222
Q ss_pred ccccccCcHHHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceee
Q 007903 393 RLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (585)
Q Consensus 393 ~~~~~~~m~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i 443 (585)
++|+++|+.++..|++ |||+| +++|+.|+|++.|.||+|
T Consensus 233 --------i~ki~~~l~~l~~g~s-v~I~~---~~~ll~elft~~g~GT~~ 271 (271)
T cd04236 233 --------IQDIATLLNALPSMSS-AVITS---AETLLTELFSHKGSGTLF 271 (271)
T ss_pred --------hHHHHHHHHhcccCCe-EEEeC---hHHHHHHHhccCCCCCcC
Confidence 8899999999999999 99998 788999999999999986
No 15
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=100.00 E-value=6.3e-41 Score=342.89 Aligned_cols=250 Identities=31% Similarity=0.430 Sum_probs=221.1
Q ss_pred eEEEEeCCccCCCCChHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccC---C--ccCCCHHHHHHHHHHH
Q 007903 101 TFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLG---R--YRITDSESLAAAMEAA 175 (585)
Q Consensus 101 ~iVIKlGGs~l~~~~l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~---g--~rvt~~~~l~~~~~~~ 175 (585)
++|||+||+++.++ ..++++|+.|+..|.++|||||||+++++.++++|++++|++ | +|+|++++|+.+..++
T Consensus 1 ~~ViK~GG~~l~~~--~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~g~~~rvt~~~~l~~~~~a~ 78 (268)
T PRK14058 1 MIVVKIGGSVGIDP--EDALIDVASLWADGERVVLVHGGSDEVNELLERLGIEPRFVTSPSGVTSRYTDRETLEVFIMAM 78 (268)
T ss_pred CEEEEEChHHhhCc--HHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHcCCCceEEeCCCCCceEeCCHHHHHHHHHHH
Confidence 58999999999885 578999999999999999999999999999999999999987 6 8999999999987777
Q ss_pred hHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeecc----cccc----ccCcceeeEEEecHHHHHHH
Q 007903 176 GGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKG----VVDG----VDYGATGEVKKVDVTRMRER 247 (585)
Q Consensus 176 G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g----~~~g----~d~g~~G~v~~v~~~~I~~l 247 (585)
+++|..|++.| +++|++ ++++++.|.++++++++. +.+| .|++|+|+|+.++.+.|+.+
T Consensus 79 ~~ln~~lv~~L---------~~~Gv~----a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~~l 145 (268)
T PRK14058 79 ALINKQLVERL---------QSLGVN----AVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLKLL 145 (268)
T ss_pred HHHHHHHHHHH---------HhCCCC----ccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECHHHHHHH
Confidence 79999999864 678987 899999998888876542 2333 68999999999999999999
Q ss_pred HcCCCeEEEcCCccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccC----CCCcccccccHHHHHHHHHhhchhh
Q 007903 248 LDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD----ESGHLIRFLTLQEADSLIRQRVKQS 323 (585)
Q Consensus 248 L~~G~IPVi~~v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~----~~~~lI~~it~~e~~~li~~~~~~~ 323 (585)
|+.|+|||++|++++.+|+.+|+|+|.+|++||.+|+||+|+|+|||||++ +++++|++++.+|+++++..
T Consensus 146 l~~g~iPVi~~~~~~~~g~~~~i~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~~~~~i~~i~~~e~~~l~~~----- 220 (268)
T PRK14058 146 LKAGYLPVVAPPALSEEGEPLNVDGDRAAAAIAGALKAEALVLLSDVPGLLRDPPDEGSLIERITPEEAEELSKA----- 220 (268)
T ss_pred HHCCCEEEEeCceECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhhccCCCCCCcCccCcCHHHHHHHhhc-----
Confidence 999999999999988889999999999999999999999999999999984 34889999998888776421
Q ss_pred hHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccCcHHH
Q 007903 324 EIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSE 403 (585)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~k 403 (585)
+ +| | |.+|
T Consensus 221 --------------------------~------------------------tG-g---------------------M~~K 228 (268)
T PRK14058 221 --------------------------A------------------------GG-G---------------------MKKK 228 (268)
T ss_pred --------------------------c------------------------CC-c---------------------cHHH
Confidence 1 35 5 8999
Q ss_pred HHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeecc
Q 007903 404 LAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (585)
Q Consensus 404 l~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~~ 445 (585)
|++|..|++.|++++||+||+.++.|+.++ +|.||+|.+
T Consensus 229 l~aa~~a~~~Gv~~v~I~~g~~~~~l~~~l---~G~GT~I~~ 267 (268)
T PRK14058 229 VLMAAEAVEGGVGRVIIADANVDDPISAAL---AGEGTVIVN 267 (268)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCcchHHHHh---CCCceEEec
Confidence 999999999999999999999999977766 456999864
No 16
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=1e-40 Score=339.18 Aligned_cols=244 Identities=34% Similarity=0.473 Sum_probs=216.6
Q ss_pred EEEEeCCccCCCCChHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccC---C--ccCCCHHHHHHHHHHHh
Q 007903 102 FVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLG---R--YRITDSESLAAAMEAAG 176 (585)
Q Consensus 102 iVIKlGGs~l~~~~l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~---g--~rvt~~~~l~~~~~~~G 176 (585)
+|||+||+++++ ++.++++|+.| |.++|||||||+++++.+++++++++|++ | .|+|++++|+++..+++
T Consensus 1 ~VIKlGGs~l~~--~~~~~~~i~~l---g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~G~~~Rvt~~~~l~~~~~a~~ 75 (257)
T cd04251 1 IVVKIGGSVVSD--LDKVIDDIANF---GERLIVVHGGGNYVNEYLKRLGVEPKFVTSPSGIRSRYTDKETLEVFVMVMG 75 (257)
T ss_pred CEEEEChHHhhC--hHHHHHHHHHc---CCCEEEECCCHHHHHHHHHHcCCCcEEEeCCCCCccccCCHHHHHHHHHHHH
Confidence 599999999986 67899999988 89999999999999999999999999985 7 49999999999976679
Q ss_pred HHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeec--------cccccccCcceeeEEEecHHHHHHHH
Q 007903 177 GIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRK--------GVVDGVDYGATGEVKKVDVTRMRERL 248 (585)
Q Consensus 177 ~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~--------g~~~g~d~g~~G~v~~v~~~~I~~lL 248 (585)
++|..|++.| +++|++ ++++++.|++++.+++. |.....|++|+|+|+.+|.+.|+.+|
T Consensus 76 ~ln~~iv~~L---------~~~Gi~----a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~~~i~~ll 142 (257)
T cd04251 76 LINKKIVARL---------HSLGVK----AVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALL 142 (257)
T ss_pred HHHHHHHHHH---------HhCCCC----ceecccccCCEEEEEEeecccccccCcccccCCcceEEEEEEcHHHHHHHH
Confidence 9999999864 678987 89999999999988765 22234588999999999999999999
Q ss_pred cCCCeEEEcCCccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccCCCCcccccccHHHHHHHHHhhchhhhHHHH
Q 007903 249 DGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDESGHLIRFLTLQEADSLIRQRVKQSEIAAN 328 (585)
Q Consensus 249 ~~G~IPVi~~v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~~~~~lI~~it~~e~~~li~~~~~~~~~~~~ 328 (585)
+.|+|||++|++++.+|+++|+|+|.+|++||.+|+||+|+|+||+||++.++++|++++.+|+++++..
T Consensus 143 ~~g~vpVi~~~~~~~~G~~~~i~~D~~A~~lA~~L~A~~li~~tdv~Gv~~~~~~i~~i~~~e~~~l~~~---------- 212 (257)
T cd04251 143 DAGYLPVVSPVAYSEEGEPLNVDGDRAAAAIAAALKAERLILLTDVEGLYLDGRVIERITVSDAESLLEK---------- 212 (257)
T ss_pred hCCCeEEEeCcEECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhheeCCcccCccCHHHHHHHHhh----------
Confidence 9999999999999999999999999999999999999999999999999777999999999998888622
Q ss_pred HHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccCcHHHHHHHH
Q 007903 329 YVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAA 408 (585)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~kl~aa~ 408 (585)
+ +| | |.+||++|.
T Consensus 213 ---------------------~------------------------~g-g---------------------m~~Kl~aa~ 225 (257)
T cd04251 213 ---------------------A------------------------GG-G---------------------MKRKLLAAA 225 (257)
T ss_pred ---------------------C------------------------CC-c---------------------hHHHHHHHH
Confidence 1 24 5 899999999
Q ss_pred HHHHcCCCeEEEecCccchhhHHHHHhcCCCceee
Q 007903 409 FVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (585)
Q Consensus 409 ~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i 443 (585)
.|++.|++++||+||+.++. |.+++. |.||.|
T Consensus 226 ~a~~~gv~~v~i~~g~~~~~-l~~~l~--g~gT~i 257 (257)
T cd04251 226 EAVEGGVREVVIGDARADSP-ISSALN--GGGTVI 257 (257)
T ss_pred HHHHcCCCEEEEecCCCccH-HHHHHc--CCCcCC
Confidence 99999999999999999987 455554 468875
No 17
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=1.1e-40 Score=338.25 Aligned_cols=248 Identities=24% Similarity=0.345 Sum_probs=223.1
Q ss_pred EEEEeCCccCCCCC-hHHHHHHHHHHH-HCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHHHHH-HhHH
Q 007903 102 FVVIISGEIVSSPY-LDPILKDIAFLH-HLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEA-AGGI 178 (585)
Q Consensus 102 iVIKlGGs~l~~~~-l~~l~~~Ia~L~-~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~~-~G~i 178 (585)
+|||+||+++++++ ++.++++|+.+. ..|.++|||||+|++++++++++++++++.+|+|+|++++++++..+ .+++
T Consensus 1 ~ViK~GGs~l~~~~~~~~~~~~i~~~~~~~~~~iVlVhGgg~~~~~~~~~~g~~~~~~~g~rvt~~~~l~~~~~~~~~~~ 80 (252)
T cd04249 1 LVIKLGGALLETEAALEQLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLNFPSEKKNGLRVTPKEQIPYITGALAGTA 80 (252)
T ss_pred CEEEEChHHhcChhhHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCCEEECCEecCCHHHHHHHHHHHcCcc
Confidence 58999999998876 889999999885 46789999999999999999999999999999999999999998544 5899
Q ss_pred HHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcCCCeEEEcC
Q 007903 179 RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSN 258 (585)
Q Consensus 179 ~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~G~IPVi~~ 258 (585)
|..+++.+ .++|++ ++++++.|++++++++.+ .|++++|+|+.+|.+.|+.+|+.|+|||++|
T Consensus 81 n~~lv~~l---------~~~Gv~----a~~l~~~~~~~~~~~~~~----~~~~~~G~v~~i~~~~l~~ll~~g~ipVi~~ 143 (252)
T cd04249 81 NKQLMAQA---------IKAGLK----PVGLSLADGGMTAVTQLD----PELGAVGKATANDPSLLNDLLKAGFLPIISS 143 (252)
T ss_pred cHHHHHHH---------HhCCCC----ceeeeccCCCEEEEEEcC----CCCCcccceEEEcHHHHHHHHHCCCEEEECC
Confidence 99998864 578987 899999999999998864 5899999999999999999999999999999
Q ss_pred CccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccC-CCCcccccccHHHHHHHHHhhchhhhHHHHHHhhhhccc
Q 007903 259 LGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEED 337 (585)
Q Consensus 259 v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~-~~~~lI~~it~~e~~~li~~~~~~~~~~~~~~~~~~~~~ 337 (585)
++++++|+++|+|+|.+|++||.+|+|| +||+|||||++ .++++|++++.+|+++++..+.
T Consensus 144 ~g~~~~g~~~~~~~D~~A~~lA~~l~A~-~i~ltdv~Gv~~~~~~~i~~i~~~e~~~~~~~g~----------------- 205 (252)
T cd04249 144 IGADDQGQLMNVNADQAATAIAQLLNAD-LVLLSDVSGVLDADKQLISELNAKQAAELIEQGV----------------- 205 (252)
T ss_pred CEECCCCCEeeecHHHHHHHHHHHcCCC-EEEEeCCcccCCCCCcCccccCHHHHHHHHhcCC-----------------
Confidence 9999999999999999999999999999 78999999985 5789999999999888864321
Q ss_pred ccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccCcHHHHHHHHHHHHcCCCe
Q 007903 338 ITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQR 417 (585)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~kl~aa~~a~~~Gv~~ 417 (585)
+ +| | |.+|+++|..+++.|+.+
T Consensus 206 ------------~------------------------~g-G---------------------m~~kl~~a~~~~~~~~~~ 227 (252)
T cd04249 206 ------------I------------------------TD-G---------------------MIVKVNAALDAAQSLRRG 227 (252)
T ss_pred ------------C------------------------cC-C---------------------cHHHHHHHHHHHHhCCCe
Confidence 2 24 5 899999999999999888
Q ss_pred EEEecCccchhhHHHHHhcCCCceee
Q 007903 418 VHLLDGTIGGVLLLELFKRDGMGTMV 443 (585)
Q Consensus 418 v~I~~g~~~~~ll~el~~~~~~GT~i 443 (585)
+||++|+.++. |.++|++++.||+|
T Consensus 228 v~I~~g~~~~~-l~~~l~g~~~GT~I 252 (252)
T cd04249 228 IDIASWQYPEQ-LTALLAGEPVGTKI 252 (252)
T ss_pred EEEEeCCCccH-HHHHHcCCCCCcCC
Confidence 99999999986 78999999999986
No 18
>PRK12352 putative carbamate kinase; Reviewed
Probab=100.00 E-value=1e-40 Score=345.54 Aligned_cols=260 Identities=17% Similarity=0.218 Sum_probs=216.2
Q ss_pred CCeEEEEeCCccCCCC-----------ChHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHH
Q 007903 99 GGTFVVIISGEIVSSP-----------YLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSES 167 (585)
Q Consensus 99 ~k~iVIKlGGs~l~~~-----------~l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~ 167 (585)
.|+||||+||+++.++ ++..+++||++|+..|+++|||||+|||++.++++.+++++| +|+|+|+.+
T Consensus 2 ~k~iVI~lGGnAl~~~~~~~~~~~~~~~~~~~a~dia~l~~~G~~lVivHG~GPqI~~~l~~~~~~~~~-~g~rvt~~~- 79 (316)
T PRK12352 2 KELVVVAIGGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLDLRRAEIAHER-EGLPLTPLA- 79 (316)
T ss_pred CcEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHcCccccc-CCCCCCCHH-
Confidence 3799999999999763 258899999999999999999999999999999999999999 699999997
Q ss_pred HHHHHHHHhHHHHHHHHhhCCCCCchhHHhcCCCCc---ceeEEeeecCccee-eeeecccc-----------ccccCcc
Q 007903 168 LAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSR---WHEVGVSVASGNFL-AAKRKGVV-----------DGVDYGA 232 (585)
Q Consensus 168 l~~~~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~---~~av~l~~~dg~~~-~a~~~g~~-----------~g~d~g~ 232 (585)
+.+.++.|.+.++|.+.|++ .|.++|.... +.+++|++.|++|+ .+||.|++ +++||+|
T Consensus 80 -~~v~~~~g~i~~~i~~~L~~-----~l~~~g~~~~~~vvt~v~vs~~D~~f~~~~kpiG~~y~~~~a~~~~~~~~~~~~ 153 (316)
T PRK12352 80 -NCVADTQGGIGYLIQQALNN-----RLARHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGAFFSESQRDELQKANPDWRF 153 (316)
T ss_pred -HHHHHHHHHHHHHHHHHHHH-----HHHhcCCCCeeEEEEEEEECCCCccccCCcccccCcccHHHHHHHhhhcCCceE
Confidence 44456777777777777753 6777773311 12588999999999 57888875 5678888
Q ss_pred eee--------------EEEecHHHHHHHHcCCCeEEEc-----CCccCCCCce----eeeChHHHHHHHHHHcCCCEEE
Q 007903 233 TGE--------------VKKVDVTRMRERLDGGCLVILS-----NLGYSSSGEV----LNCNTYEVATACALAIEADKLI 289 (585)
Q Consensus 233 ~G~--------------v~~v~~~~I~~lL~~G~IPVi~-----~v~~~~~G~~----~nid~D~lAa~lA~~L~AdkLI 289 (585)
++. |+.||.+.|+.||++|+|||++ |++.+.+|+. +|||+|.+|+.+|.+|+||+||
T Consensus 154 ~~d~g~G~rrvv~sp~pv~~V~~~~I~~ll~~g~iVi~~ggggiPv~~~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI 233 (316)
T PRK12352 154 VEDAGRGYRRVVASPEPKRIVEAPAIKALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILV 233 (316)
T ss_pred eecCCCCeEEecCCCCCceEEcHHHHHHHHHCCCEEEecCCCCCCEEeCCCCCccCceeeecHHHHHHHHHHHhCCCEEE
Confidence 555 9999999999999999997777 8877766654 5699999999999999999999
Q ss_pred EeecccccC-----CCCcccccccHHHHHHHHHhhchhhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchh
Q 007903 290 CIIDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRI 364 (585)
Q Consensus 290 ilTDV~gl~-----~~~~lI~~it~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (585)
|||||+|+. +++++|++++.+|+++++.++.
T Consensus 234 ~LTDV~GV~~d~~~~~~~li~~lt~~e~~~li~~g~-------------------------------------------- 269 (316)
T PRK12352 234 ITTGVEKVCIHFGKPQQQALDRVDIATMTRYMQEGH-------------------------------------------- 269 (316)
T ss_pred EEeCchhhccCCCCCCcccccccCHHHHHHHHhcCC--------------------------------------------
Confidence 999999984 3578999999999999986532
Q ss_pred ccccCCccccCCCCCcccccccccccccccccccCcHHHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeec
Q 007903 365 ATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (585)
Q Consensus 365 ~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~ 444 (585)
+..| | |.+||++|+.|++.|+.++||++ ++. +.++|+++ .||+|.
T Consensus 270 --------i~~G-g---------------------M~pKl~aA~~al~~Gv~~v~I~~---~~~-i~~al~g~-~GT~I~ 314 (316)
T PRK12352 270 --------FPPG-S---------------------MLPKIIASLTFLEQGGKEVIITT---PEC-LPAALRGE-TGTHII 314 (316)
T ss_pred --------cCCC-C---------------------CHHHHHHHHHHHHhCCCeEEEcc---hHH-HHHHHcCC-CCeEEE
Confidence 1124 4 89999999999999999999997 444 67888766 899986
Q ss_pred c
Q 007903 445 S 445 (585)
Q Consensus 445 ~ 445 (585)
.
T Consensus 315 ~ 315 (316)
T PRK12352 315 K 315 (316)
T ss_pred e
Confidence 4
No 19
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=100.00 E-value=1.5e-38 Score=318.72 Aligned_cols=201 Identities=32% Similarity=0.503 Sum_probs=183.5
Q ss_pred eEEEEeCCccCCCCChHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHH-HHHHhHHH
Q 007903 101 TFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAAGGIR 179 (585)
Q Consensus 101 ~iVIKlGGs~l~~~~l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~-~~~~G~i~ 179 (585)
++|||+||++++++ +.+++++|+.|+..|.++|||||||++++.++++++++.++.+|.|+|++++++.+ ++.+|++|
T Consensus 1 ~~ViK~GGs~l~~~-~~~~~~~i~~l~~~g~~~VlVhggg~~~~~~~~~~~~~~~~~~g~r~t~~~~~~~~~~~~~g~~~ 79 (231)
T TIGR00761 1 TIVIKIGGAAISDL-LEAFASDIAFLRAVGIKPVIVHGGGPEINELLEALGIPPEFKNGLRVTDKETLEVVEMVLIGQVN 79 (231)
T ss_pred CEEEEEChHHHhcc-HHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHcCCCCEecCCCccCCHHHHHHHHHHHhcchH
Confidence 68999999999987 99999999999999999999999999999999999999999999999999999987 45577999
Q ss_pred HHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcCCCeEEEcCC
Q 007903 180 MMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL 259 (585)
Q Consensus 180 ~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~G~IPVi~~v 259 (585)
..+++. |+++|++ ++++++.|++++++++. ++.|++++|+++.++.+.|+++|+.|+|||++|+
T Consensus 80 ~~i~~~---------L~~~G~~----a~~l~~~~~~~it~~~~---~~~~~~~~g~i~~i~~~~i~~~l~~g~IPVi~~~ 143 (231)
T TIGR00761 80 KELVAL---------LNKHGIN----AIGLTGGDGQLFTARSL---DKEDLGYVGEIKKVNKALLEALLKAGYIPVISSL 143 (231)
T ss_pred HHHHHH---------HHhCCCC----cccccCCCCCEEEEEEC---CCccCCcccceEEEcHHHHHHHHHCCCeEEECCC
Confidence 999885 4778987 79999999999999864 4568999999999999999999999999999999
Q ss_pred ccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccC-CC-CcccccccHHHHHHHHHh
Q 007903 260 GYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ES-GHLIRFLTLQEADSLIRQ 318 (585)
Q Consensus 260 ~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~-~~-~~lI~~it~~e~~~li~~ 318 (585)
+++.+|+++|+|+|.+|++||.+|+||+|+|+||+||++ .+ +++|++++.+|+++++..
T Consensus 144 ~~~~~g~~~~l~sD~~A~~lA~~l~A~~li~ltdv~Gv~~~d~~~~i~~i~~~e~~~l~~~ 204 (231)
T TIGR00761 144 ALTAEGQALNVNADTAAGALAAALGAEKLVLLTDVPGILNGDGQSLISEIPLEEIEQLIEQ 204 (231)
T ss_pred ccCCCCcEEEeCHHHHHHHHHHHcCCCEEEEEECCCCeecCCCCeeccccCHHHHHHHHHc
Confidence 999999999999999999999999999999999999984 33 459999999998888643
No 20
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=1e-34 Score=294.53 Aligned_cols=238 Identities=18% Similarity=0.234 Sum_probs=198.0
Q ss_pred eEEEEeCCccCCCCC---------hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHH
Q 007903 101 TFVVIISGEIVSSPY---------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA 171 (585)
Q Consensus 101 ~iVIKlGGs~l~~~~---------l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~ 171 (585)
++|||+||++|++++ +++++++|+.++ |+++|||||||++++..++++|+++ |.|+++++.|..+
T Consensus 1 ~iVIKiGGs~l~~~~~~~~~~~~~l~~l~~~l~~l~--g~~vvlVhGgg~~~~~~~~~~g~~~----g~~~~~~~~l~~~ 74 (252)
T cd04241 1 MIILKLGGSVITDKDRPETIREENLERIARELAEAI--DEKLVLVHGGGSFGHPKAKEYGLPD----GDGSFSAEGVAET 74 (252)
T ss_pred CEEEEEeceEEEcCCCCCccCHHHHHHHHHHHHhcc--CCCEEEEECCCcccCHHHHHhCCCc----CCCchhhhhHHHH
Confidence 489999999998753 456677777665 9999999999999999999999976 7789999999998
Q ss_pred HHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcCC
Q 007903 172 MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGG 251 (585)
Q Consensus 172 ~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~G 251 (585)
..+++++|..++++ |.++|++ ++++++.+. +.+. +|+++.++.+.|+++|+.|
T Consensus 75 ~~~~~~ln~~~~~~---------l~~~g~~----a~~l~~~~~--~~~~------------~g~~~~~~~~~l~~ll~~g 127 (252)
T cd04241 75 HEAMLELNSIVVDA---------LLEAGVP----AVSVPPSSF--FVTE------------NGRIVSFDLEVIKELLDRG 127 (252)
T ss_pred HHHHHHHHHHHHHH---------HHHCCCC----eEEEChHHe--EEec------------CCeeeeecHHHHHHHHhCC
Confidence 77778999888875 4778987 677777663 2221 4788899999999999999
Q ss_pred CeEEEcCC-ccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccC-C---CCcccccccHHHHHHHHHhhchhhhHH
Q 007903 252 CLVILSNL-GYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-E---SGHLIRFLTLQEADSLIRQRVKQSEIA 326 (585)
Q Consensus 252 ~IPVi~~v-~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~-~---~~~lI~~it~~e~~~li~~~~~~~~~~ 326 (585)
+|||+++. +.+.+|+.+|+|+|++|+.+|.+|+||+|+|+|||||++ . ++++|++++.+++++++....
T Consensus 128 ~iPVi~~~~~~~~~~~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~P~~~~~i~~i~~~~~~~~~~~~~------ 201 (252)
T cd04241 128 FVPVLHGDVVLDEGGGITILSGDDIVVELAKALKPERVIFLTDVDGVYDKPPPDAKLIPEIDVGSLEDILAALG------ 201 (252)
T ss_pred CEEEEcCCeEecCCCCeEEeChHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCeEcceeCccchHHHHHhcC------
Confidence 99999874 577788899999999999999999999999999999984 2 599999999988888764200
Q ss_pred HHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccCcHHHHHH
Q 007903 327 ANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAA 406 (585)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~kl~a 406 (585)
.++...+| | |.+||++
T Consensus 202 ------------------------------------------~~~~~~tG-G---------------------m~~Kl~a 217 (252)
T cd04241 202 ------------------------------------------SAGTDVTG-G---------------------MAGKIEE 217 (252)
T ss_pred ------------------------------------------cCCccccC-C---------------------HHHHHHH
Confidence 00111235 5 9999999
Q ss_pred HHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceee
Q 007903 407 AAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (585)
Q Consensus 407 a~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i 443 (585)
|..+++.|++ +||+||+.++. |.++++++..||+|
T Consensus 218 a~~a~~~Gv~-v~I~~g~~~~~-l~~~l~g~~~GT~i 252 (252)
T cd04241 218 LLELARRGIE-VYIFNGDKPEN-LYRALLGNFIGTRI 252 (252)
T ss_pred HHHHHhcCCe-EEEEeCCCHHH-HHHHHcCCCCceEC
Confidence 9999999998 99999999987 67888888899985
No 21
>PRK12686 carbamate kinase; Reviewed
Probab=100.00 E-value=2.4e-32 Score=281.53 Aligned_cols=255 Identities=18% Similarity=0.209 Sum_probs=197.1
Q ss_pred CCeEEEEeCCccCCCCC---------hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHH-HcCCcccccCCccCCCHHHH
Q 007903 99 GGTFVVIISGEIVSSPY---------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLS-ERGHEAKYLGRYRITDSESL 168 (585)
Q Consensus 99 ~k~iVIKlGGs~l~~~~---------l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~-~~g~~~~~~~g~rvt~~~~l 168 (585)
++++|||+|||+|.++. .+..+++|+.|.+.|+++|||||+|||++.++. ..+....+ .++.+|
T Consensus 2 ~~~iVialGGnAl~~~~~~~~~q~~~~~~~a~~ia~l~~~g~~~vi~HGnGPQVg~~~~~~~~~~~~~------~~~~pl 75 (312)
T PRK12686 2 KEKIVIALGGNAILQTEATAEAQQTAVREAAQHLVDLIEAGHDIVITHGNGPQVGNLLLQQAESNSNK------VPAMPL 75 (312)
T ss_pred CCEEEEEcChHhhCCCCCChHHHHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHhccccC------CCCCCh
Confidence 57999999999998744 478999999999999999999999999995544 44444322 456678
Q ss_pred HHH-HHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcce----eEEeeecCcceee-eeecccc------------c----
Q 007903 169 AAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWH----EVGVSVASGNFLA-AKRKGVV------------D---- 226 (585)
Q Consensus 169 ~~~-~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~----av~l~~~dg~~~~-a~~~g~~------------~---- 226 (585)
+++ .++.|.+.++|+++|.+ +|.++++..++. ++.++..|..|.. .|+.|+. .
T Consensus 76 ~~~~a~sqg~iGy~~~q~l~~-----~l~~r~~~~~v~~vvtqv~Vd~~d~af~~ptk~ig~~~~~~~a~~~~~~~g~~~ 150 (312)
T PRK12686 76 DTCVAMSQGMIGYWLQNALNN-----ELTERGIDKPVITLVTQVEVDKDDPAFANPTKPIGPFYTEEEAKQQAEQPGSTF 150 (312)
T ss_pred hhhhhhccchhhHHHHHHHHH-----HHHhcCCCCCceEEEEEEEECCCChhhcCCCCCccCccCHHHHHHHHHHcCCcc
Confidence 886 67999999999999975 888888876553 3457777776666 3555531 0
Q ss_pred ccc--CcceeeEEE------ecHHHHHHHHcCCCeEEEc-----CCccCCCCcee----eeChHHHHHHHHHHcCCCEEE
Q 007903 227 GVD--YGATGEVKK------VDVTRMRERLDGGCLVILS-----NLGYSSSGEVL----NCNTYEVATACALAIEADKLI 289 (585)
Q Consensus 227 g~d--~g~~G~v~~------v~~~~I~~lL~~G~IPVi~-----~v~~~~~G~~~----nid~D~lAa~lA~~L~AdkLI 289 (585)
..| .||++.|.+ ++.+.|+.||++|+|||++ |+..+ ++.++ ++|+|.+|+.||.+|+||+||
T Consensus 151 ~~d~~~G~rrvV~sP~P~~ive~~~I~~Ll~~G~IpI~~GgggIPVv~~-~~~~~gv~avid~D~~Aa~LA~~L~Ad~LI 229 (312)
T PRK12686 151 KEDAGRGYRRVVPSPKPQEIIEHDTIRTLVDGGNIVIACGGGGIPVIRD-DNTLKGVEAVIDKDFASEKLAEQIDADLLI 229 (312)
T ss_pred cccCCCCeEEeeCCCCCccccCHHHHHHHHHCCCEEEEeCCCCCCeEec-CCcEEeeecccCccHHHHHHHHHcCCCEEE
Confidence 123 489998877 9999999999999999876 44433 34333 679999999999999999999
Q ss_pred EeecccccC-----CCCcccccccHHHHHHHHHhhchhhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchh
Q 007903 290 CIIDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRI 364 (585)
Q Consensus 290 ilTDV~gl~-----~~~~lI~~it~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (585)
|||||+|++ +++++|++++.+|++.++.++.
T Consensus 230 iLTDVdGVy~~~~~p~ak~I~~I~~~e~~~li~~g~-------------------------------------------- 265 (312)
T PRK12686 230 ILTGVENVFINFNKPNQQKLDDITVAEAKQYIAEGQ-------------------------------------------- 265 (312)
T ss_pred EEeCchhhccCCCCCCCeECCccCHHHHHHHhhCCC--------------------------------------------
Confidence 999999984 4689999999999888875421
Q ss_pred ccccCCccccCCCCCcccccccccccccccccccCcHHHHHHHHHHHHcCC-CeEEEecCccchhhHHHHHhcCCCceee
Q 007903 365 ATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGV-QRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (585)
Q Consensus 365 ~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~kl~aa~~a~~~Gv-~~v~I~~g~~~~~ll~el~~~~~~GT~i 443 (585)
|.+| | |.+|++||..+++.|+ .+++|++ ++. +.+++.++ .||.|
T Consensus 266 --------~~tG-G---------------------M~pKveAA~~av~~g~g~~viI~~---~~~-i~~aL~G~-~GT~I 310 (312)
T PRK12686 266 --------FAPG-S---------------------MLPKVEAAIDFVESGEGKKAIITS---LEQ-AKEALAGN-AGTHI 310 (312)
T ss_pred --------ccCC-C---------------------cHHHHHHHHHHHHhCCCCEEEEeC---chH-HHHHhCCC-CCeEE
Confidence 2345 5 8999999999998764 4577776 333 45666554 89998
Q ss_pred c
Q 007903 444 A 444 (585)
Q Consensus 444 ~ 444 (585)
.
T Consensus 311 ~ 311 (312)
T PRK12686 311 T 311 (312)
T ss_pred e
Confidence 4
No 22
>PRK12353 putative amino acid kinase; Reviewed
Probab=100.00 E-value=5.8e-32 Score=281.65 Aligned_cols=262 Identities=18% Similarity=0.226 Sum_probs=195.6
Q ss_pred cCCeEEEEeCCccCCCCC---------hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHH
Q 007903 98 RGGTFVVIISGEIVSSPY---------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESL 168 (585)
Q Consensus 98 r~k~iVIKlGGs~l~~~~---------l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l 168 (585)
++++|||||||++|++++ +..++++|+.|++.|+++|||||||+|++..+...+..+++.. ++++....
T Consensus 1 ~~~~iVIklGG~~L~~~~~~~~~~~~~i~~la~~Ia~l~~~G~~vvlV~Gg~~~~G~~~~~~~~~~~~~~--~~~~~~~~ 78 (314)
T PRK12353 1 MMKKIVVALGGNALGSTPEEATAQLEAVKKTAKSLVDLIEEGHEVVITHGNGPQVGNILLAQEAAASEKN--KVPAMPLD 78 (314)
T ss_pred CCcEEEEEECHHHhCCCCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEeCCchHhCHHHhcCccccccCC--CCCCchhH
Confidence 468999999999999865 6899999999999999999999999999887666555443322 55665444
Q ss_pred HHHHHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcc----eeEEeeecCcce-eeeeecccc------------ccccCc
Q 007903 169 AAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRW----HEVGVSVASGNF-LAAKRKGVV------------DGVDYG 231 (585)
Q Consensus 169 ~~~~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~----~av~l~~~dg~~-~~a~~~g~~------------~g~d~g 231 (585)
..+...+|.+.+.|++.|++ .|..+|+..+. .++-++..|..| ..++|.|++ +|.||.
T Consensus 79 ~~~a~~qg~l~~~l~~~~~~-----~l~~~~~~~~~~~~v~q~ll~~~d~~f~~~~~p~g~~~~~~~~~~~~~~~g~~~~ 153 (314)
T PRK12353 79 VCGAMSQGYIGYHLQNALRN-----ELLKRGIDKPVATVVTQVVVDANDPAFKNPTKPIGPFYTEEEAEKLAKEKGYTFK 153 (314)
T ss_pred HHHHHHhHHHHHHHHHHHHH-----HHHhcCCCcccceEEEEEEEcCCcccccCCCccccccccHHHHHHhhhhcCceee
Confidence 44466788888888888864 78888875433 234456666556 556777765 456665
Q ss_pred c-eee-EEE----------ecHHHHHHHHcCCCeEEEcCCc----cCCCCcee----eeChHHHHHHHHHHcCCCEEEEe
Q 007903 232 A-TGE-VKK----------VDVTRMRERLDGGCLVILSNLG----YSSSGEVL----NCNTYEVATACALAIEADKLICI 291 (585)
Q Consensus 232 ~-~G~-v~~----------v~~~~I~~lL~~G~IPVi~~v~----~~~~G~~~----nid~D~lAa~lA~~L~AdkLIil 291 (585)
+ +++ .++ ++.+.|+.||+.|+|||+++.+ ..+++.++ ++|+|++|+++|.+|+||+||++
T Consensus 154 ~~~~~~~r~~v~sp~p~~~v~~~~i~~lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~l 233 (314)
T PRK12353 154 EDAGRGYRRVVPSPKPVDIVEIEAIKTLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIIL 233 (314)
T ss_pred ecCCceeEeccCCCCccccccHHHHHHHHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEE
Confidence 5 332 333 7899999999999999999653 22233333 59999999999999999999999
Q ss_pred ecccccC-----CCCcccccccHHHHHHHHHhhchhhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhcc
Q 007903 292 IDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIAT 366 (585)
Q Consensus 292 TDV~gl~-----~~~~lI~~it~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (585)
|||||++ +++++|++++.+|+++++..+.
T Consensus 234 TdvdGVy~~~~~~~a~~i~~i~~~e~~~~~~~~~---------------------------------------------- 267 (314)
T PRK12353 234 TAVDKVYINFGKPNQKKLDEVTVSEAEKYIEEGQ---------------------------------------------- 267 (314)
T ss_pred eCCccccCCCCCCCCeECcCcCHHHHHHHHhcCC----------------------------------------------
Confidence 9999984 3589999999888877764311
Q ss_pred ccCCccccCCCCCcccccccccccccccccccCcHHHHHHHHHHH-HcCCCeEEEecCccchhhHHHHHhcCCCceeecc
Q 007903 367 FNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVC-RRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (585)
Q Consensus 367 ~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~kl~aa~~a~-~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~~ 445 (585)
+++| | |.+||++|..++ +.+...++|++ ++. +.+++.++ .||.|.+
T Consensus 268 ------~~tG-G---------------------M~~Kl~aA~~a~~~~~g~~v~I~~---~~~-i~~~l~g~-~GT~i~~ 314 (314)
T PRK12353 268 ------FAPG-S---------------------MLPKVEAAISFVESRPGRKAIITS---LEK-AKEALEGK-AGTVIVK 314 (314)
T ss_pred ------cCCC-C---------------------cHHHHHHHHHHHHHcCCCEEEECC---chH-HHHHhCCC-CCeEecC
Confidence 1235 5 899999999999 44444589998 444 45666665 8999853
No 23
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=100.00 E-value=6.8e-32 Score=277.58 Aligned_cols=258 Identities=21% Similarity=0.234 Sum_probs=200.7
Q ss_pred CCeEEEEeCCccCCCCC-----------hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHH
Q 007903 99 GGTFVVIISGEIVSSPY-----------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSES 167 (585)
Q Consensus 99 ~k~iVIKlGGs~l~~~~-----------l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~ 167 (585)
++++||+|||++|..+. ++..+++|+.|.+.|+++|||||+|||++.++......... + +++.+
T Consensus 2 ~~~ivvalgGnAl~~~~~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGpQVG~i~~~~~~~~~~--~---~~~~p 76 (313)
T PRK12454 2 KKRIVIALGGNALLQPGEKGTAENQMKNVRKTAKQIADLIEEGYEVVITHGNGPQVGNLLLQMDAAKDV--G---IPPFP 76 (313)
T ss_pred CceEEEEeChHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHcCCEEEEEECCChHHHHHHHHHHHhccc--C---CCCCc
Confidence 47999999999997622 57889999999999999999999999999887665433210 0 34556
Q ss_pred HHHH-HHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcce----eEEeeecCcceee-eeecccc-c--------------
Q 007903 168 LAAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWH----EVGVSVASGNFLA-AKRKGVV-D-------------- 226 (585)
Q Consensus 168 l~~~-~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~----av~l~~~dg~~~~-a~~~g~~-~-------------- 226 (585)
|+.+ .+++|.+.++|+++|++ +|.++|++.++. ++.++..|..|-. .||.|+. +
T Consensus 77 ld~~~a~sqG~igy~l~~al~~-----~l~~~g~~~~v~t~~tq~~Vd~~Dpaf~~PtKpiG~~y~~~~a~~~~~~~g~~ 151 (313)
T PRK12454 77 LDVAGAMTQGWIGYMIQQALRN-----ELAKRGIEKQVATIVTQVIVDKNDPAFQNPTKPVGPFYDEEEAKKLAKEKGWI 151 (313)
T ss_pred cchhhhhhhHHHHHHHHHHHHH-----HHHhcCCCCceEEEEEEEEECCCCccccCCCCCcCCCcCHHHHHHHHHHcCCE
Confidence 7776 67999999999999975 899999987664 4567777777766 3666632 1
Q ss_pred ---cccCcceee------EEEecHHHHHHHHcCCCeEEEcCCc----cCCCCceee----eChHHHHHHHHHHcCCCEEE
Q 007903 227 ---GVDYGATGE------VKKVDVTRMRERLDGGCLVILSNLG----YSSSGEVLN----CNTYEVATACALAIEADKLI 289 (585)
Q Consensus 227 ---g~d~g~~G~------v~~v~~~~I~~lL~~G~IPVi~~v~----~~~~G~~~n----id~D~lAa~lA~~L~AdkLI 289 (585)
....||.-. ++.++.+.|+.||++|.|||+++.+ ++.+|+++| +|+|.+|+.||.+|+||+||
T Consensus 152 ~~~d~g~g~RrvV~SP~P~~ive~~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LI 231 (313)
T PRK12454 152 VKEDAGRGWRRVVPSPDPLGIVEIEVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFI 231 (313)
T ss_pred EEEcCCCceEEEeCCCCCccccCHHHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEE
Confidence 012334432 3688999999999999999999543 677777776 47899999999999999999
Q ss_pred EeecccccC-----CCCcccccccHHHHHHHHHhhchhhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchh
Q 007903 290 CIIDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRI 364 (585)
Q Consensus 290 ilTDV~gl~-----~~~~lI~~it~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (585)
|||||+|++ +++++|++++.+|+++++.++.
T Consensus 232 iLTdVdGVy~~~~~p~~~~i~~It~~e~~~~i~~g~-------------------------------------------- 267 (313)
T PRK12454 232 ILTDVEKVYLNYGKPDQKPLDKVTVEEAKKYYEEGH-------------------------------------------- 267 (313)
T ss_pred EEeCCceeeCCCCCCCCeEccccCHHHHHHHHhcCC--------------------------------------------
Confidence 999999983 5689999999999988875421
Q ss_pred ccccCCccccCCCCCcccccccccccccccccccCcHHHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeec
Q 007903 365 ATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (585)
Q Consensus 365 ~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~ 444 (585)
|.+| | |.+||+||+.+++.|+.+++|.+. +. +.+++.++ .||.|.
T Consensus 268 --------~~~G-g---------------------M~pKv~AA~~~v~~gg~~a~I~~~---~~-i~~aL~G~-~GT~I~ 312 (313)
T PRK12454 268 --------FKAG-S---------------------MGPKILAAIRFVENGGKRAIIASL---EK-AVEALEGK-TGTRII 312 (313)
T ss_pred --------cCCC-C---------------------hHHHHHHHHHHHHcCCCeEEECch---HH-HHHHHCCC-CCeEeC
Confidence 2245 5 999999999999999999999963 33 56666555 899985
Q ss_pred c
Q 007903 445 S 445 (585)
Q Consensus 445 ~ 445 (585)
+
T Consensus 313 ~ 313 (313)
T PRK12454 313 P 313 (313)
T ss_pred C
Confidence 3
No 24
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=99.98 E-value=6.8e-32 Score=272.37 Aligned_cols=237 Identities=30% Similarity=0.396 Sum_probs=204.8
Q ss_pred EEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHHHHHHhHHHHH
Q 007903 103 VVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMM 181 (585)
Q Consensus 103 VIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~~~G~i~~~ 181 (585)
||||||++++++. ++.++++|+.|++.|+++|||||||++++..+.+++....+..+.++++.+.+.++....+..+..
T Consensus 1 ViKiGGs~l~~~~~~~~~~~~i~~l~~~~~~~viV~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
T cd02115 1 VIKFGGSSVSSEERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMGEGMSNLL 80 (248)
T ss_pred CEeeCccccCCHHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 7999999998854 899999999999899999999999999999999998887777888999998888776666777777
Q ss_pred HHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcCCCeEEEcCCcc
Q 007903 182 IEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGY 261 (585)
Q Consensus 182 L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~G~IPVi~~v~~ 261 (585)
+++. |.++|++ +..+.+.+..+.. .+++++|++..++.+.|+++|+.|.|||+++.+.
T Consensus 81 ~~~~---------l~~~gi~----a~~~~~~~~~~~~---------~~~~~~g~~~~~~~~~l~~~l~~~~ipVv~g~~~ 138 (248)
T cd02115 81 IAAA---------LEQHGIK----AVPLDLTQAGFAS---------PNQGHVGKITKVSTDRLKSLLENGILPILSGFGG 138 (248)
T ss_pred HHHH---------HHhCCCC----eEEEchHHcCeEe---------CCCCCcccceeeCHHHHHHHHhCCcEEEecCeEe
Confidence 7775 5788987 6777777654443 2578889999999999999999999999999865
Q ss_pred CC---CCceeeeChHHHHHHHHHHcCCCEEEEeecccccC-------CCCcccccccHHHHHHHHHhhchhhhHHHHHHh
Q 007903 262 SS---SGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVK 331 (585)
Q Consensus 262 ~~---~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~-------~~~~lI~~it~~e~~~li~~~~~~~~~~~~~~~ 331 (585)
.. .+++.++++|.+|+.||.+|+||+|+|+|||||++ +++++|++++.+|++++...
T Consensus 139 ~~~~~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~------------- 205 (248)
T cd02115 139 TDEKETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSELTYEEAAELAYA------------- 205 (248)
T ss_pred ccCCceeeecCCCHHHHHHHHHHHcCCCEEEEEecCCeeecCCCCcCCcCeECCcCCHHHHHHHHHc-------------
Confidence 54 67889999999999999999999999999999983 24999999999888887532
Q ss_pred hhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccCcHHHHHHHHHHH
Q 007903 332 AVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVC 411 (585)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~kl~aa~~a~ 411 (585)
| + |..|++++..++
T Consensus 206 --------------------------------------------g-~---------------------~~~k~~a~~~~~ 219 (248)
T cd02115 206 --------------------------------------------G-A---------------------MVLKPKAADPAA 219 (248)
T ss_pred --------------------------------------------C-C---------------------CccCHHHHHHHH
Confidence 3 3 788999999999
Q ss_pred HcCCCeEEEecCccchhhHHHHHhcCCCceee
Q 007903 412 RRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 443 (585)
Q Consensus 412 ~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i 443 (585)
+.|+ +++|+++..++.| ++|++++.||+|
T Consensus 220 ~~~~-~v~I~~~~~~~~l--~~~~~~~~GT~I 248 (248)
T cd02115 220 RAGI-PVRIANTENPGAL--ALFTPDGGGTLI 248 (248)
T ss_pred HcCC-cEEEEeCCCcccc--cccCCCCCCCCC
Confidence 9996 4999999999985 999999999986
No 25
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=99.97 E-value=7.9e-31 Score=268.12 Aligned_cols=296 Identities=19% Similarity=0.245 Sum_probs=213.8
Q ss_pred CCeEEEEeCCccCCCCC-------hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHH
Q 007903 99 GGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA 171 (585)
Q Consensus 99 ~k~iVIKlGGs~l~~~~-------l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~ 171 (585)
.+++|||+|+|+|+++. ++.++++|+.|++.|++||||++|. +...+..+|++.+ .++....+ +
T Consensus 6 ~~riVvKiGSs~Lt~~~g~l~~~~l~~l~~~ia~L~~~G~eVilVSSGA--iaaG~~~Lg~~~r------p~~l~~kQ-A 76 (369)
T COG0263 6 ARRIVVKIGSSSLTDGTGGLDRSKLEELVRQVAALHKAGHEVVLVSSGA--IAAGRTRLGLPKR------PKTLAEKQ-A 76 (369)
T ss_pred ceEEEEEECcceeeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEccch--hhhChhhcCCCCC------CcchHHHH-H
Confidence 38999999999999864 7899999999999999999999995 6667889998863 34333333 4
Q ss_pred HHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEec-HHHHHHHHcC
Q 007903 172 MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVD-VTRMRERLDG 250 (585)
Q Consensus 172 ~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~-~~~I~~lL~~ 250 (585)
.+++||.. |++.|++ .|.+||++ +.++-|+-.| +. -+.+..| .++|..||+.
T Consensus 77 ~AAVGQ~~--Lm~~y~~-----~f~~~g~~--v~QiLLTr~D---~~---------------~r~ry~Nar~Tl~~Ll~~ 129 (369)
T COG0263 77 AAAVGQVR--LMQLYEE-----LFARYGIK--VGQILLTRDD---FS---------------DRRRYLNARNTLSALLEL 129 (369)
T ss_pred HHHhCHHH--HHHHHHH-----HHHhcCCe--eeEEEeehhh---hh---------------hHHHHHHHHHHHHHHHHC
Confidence 56899987 8999975 89999987 4556555554 11 1113456 4999999999
Q ss_pred CCeEEEcCCccCCCCceeeeChHHHHHHHHHHcCCCEEEEeeccccc-------CCCCcccccccHHHHHHHHHhhchhh
Q 007903 251 GCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-------DESGHLIRFLTLQEADSLIRQRVKQS 323 (585)
Q Consensus 251 G~IPVi~~v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl-------~~~~~lI~~it~~e~~~li~~~~~~~ 323 (585)
|.|||||....-..-|+.+.|||++|+.+|..++||.|++|||+||+ +||+++|++++. +...+.
T Consensus 130 gvVPIINENDtva~~EikfGDND~LsA~VA~lv~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~--it~ei~------ 201 (369)
T COG0263 130 GVVPIINENDTVATEEIKFGDNDTLSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVEE--ITPEIE------ 201 (369)
T ss_pred CceeeecCCCceeeeeeeecCCchHHHHHHHHhCCCEEEEEEccCcccCCCCCCCCCCeeehhhcc--cCHHHH------
Confidence 99999996432223389999999999999999999999999999998 257888888763 111111
Q ss_pred hHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccCcHHH
Q 007903 324 EIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSE 403 (585)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~k 403 (585)
++++ +.|+.+||| | |.+|
T Consensus 202 --------~~ag--------------------------------gsgs~~GTG-G---------------------M~TK 219 (369)
T COG0263 202 --------AMAG--------------------------------GSGSELGTG-G---------------------MRTK 219 (369)
T ss_pred --------HHhc--------------------------------CCCCCCCcc-c---------------------HHHH
Confidence 1221 256678888 7 8999
Q ss_pred HHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeeccccc--ccccccc-----------ccCHHHHHHHHHHHH
Q 007903 404 LAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLY--EGTRTAK-----------VTDLSGIKQIIQPLV 470 (585)
Q Consensus 404 l~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~~d~~--~~IR~at-----------~~D~~~I~~Li~~~~ 470 (585)
|+||..|+++|++ +.|.+|..++. +.++..++..||+|.+... ..-|+.+ .-|..+..++. .
T Consensus 220 l~AA~iA~~aG~~-~iI~~g~~~~~-i~~~~~~~~~GT~F~~~~~~~~~ark~Wi~~~~~~~G~i~iD~GA~~Al~---~ 294 (369)
T COG0263 220 LEAAKIATRAGVP-VIIASGSKPDV-ILDALEGEAVGTLFEPQAKERLNARKQWIAGALPPAGEITVDAGAVEALL---E 294 (369)
T ss_pred HHHHHHHHHcCCc-EEEecCCCcch-HHHHHhCCCCccEEecCCcchhhhhHHHhhcCCCCCceEEECccHHHHHH---h
Confidence 9999999999999 89999999997 6677789999999985432 1112211 23555555551 1
Q ss_pred HccccccCCHHHHHhcc---CeEEEEEECCeEEEEEEEe
Q 007903 471 ESGALVRRTDEELLKAL---DSFYVVEREGQIIACAALF 506 (585)
Q Consensus 471 ~~~~~~~~~~e~l~~~i---~~~~Va~~dg~IVG~~~l~ 506 (585)
....++|.....++..| +.+-+. .++..||.+...
T Consensus 295 ~gkSLLpaGV~~V~G~F~rGdvV~i~-~~g~~iarG~v~ 332 (369)
T COG0263 295 QGKSLLPAGVTSVEGNFSRGDVVRIR-PQGGEIARGLVN 332 (369)
T ss_pred cCCccccccceEeeeeecCCCEEEEe-cCCceeEeeecc
Confidence 12224454445555555 333333 566677777665
No 26
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=99.97 E-value=6.1e-30 Score=264.85 Aligned_cols=255 Identities=19% Similarity=0.212 Sum_probs=187.5
Q ss_pred CeEEEEeCCccCCCC--C---------hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHH
Q 007903 100 GTFVVIISGEIVSSP--Y---------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESL 168 (585)
Q Consensus 100 k~iVIKlGGs~l~~~--~---------l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l 168 (585)
|+||||+|||+|.++ . ++.++++|+.|.+.|+++|||||||||++.........+ ..+++..|
T Consensus 1 ~riViklGgnaL~~~g~~~~~~~~~~~i~~~a~~ia~l~~~g~~vviv~gngpqvG~~~l~~~~~~------~~~~~~p~ 74 (310)
T TIGR00746 1 KRVVVALGGNALLQRGEKGSAEAQRDNVRQTAPQIAKLIKRGYELVITHGNGPQVGNLLLQNQAAD------SEVPAMPL 74 (310)
T ss_pred CeEEEEECHHHhCCCCCCCCcchhHHHHHHHHHHHHHHHHCCCEEEEEECChHHHHHHHhcccccc------ccCCCCcc
Confidence 689999999999842 1 578999999999999999999999999997654332211 11334456
Q ss_pred HHH-HHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcc----eeEEeeecCcceeee-eecccc-----------------
Q 007903 169 AAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRW----HEVGVSVASGNFLAA-KRKGVV----------------- 225 (585)
Q Consensus 169 ~~~-~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~----~av~l~~~dg~~~~a-~~~g~~----------------- 225 (585)
+++ ...+|.+.+.+..+|++ .+.++|++.++ .++.|+..|..|-.. |+.|..
T Consensus 75 ~~~~A~~qg~lg~~~~~~l~~-----~l~~~g~~~~v~~~vtqv~v~~~D~af~~p~k~ig~~y~~~~a~~~~~~~~~~~ 149 (310)
T TIGR00746 75 DVLGAMSQGMIGYMLQQALNN-----ELPKRGMEKPVATVLTQTIVDPKDPAFQNPTKPIGPFYTEEEAKRLAAEKGWIV 149 (310)
T ss_pred hHHHHhhHHHHHHHHHHHHHH-----HHHhcCCCccceEEEEEEEECCCcccccCCCCcCCCCcCHHHHHHHHHHcCCeE
Confidence 765 56888899989888754 67788877654 356677777666543 332311
Q ss_pred -ccccCcceee------EEEecHHHHHHHHcCCCeEEEcCCc----cCCCCce----eeeChHHHHHHHHHHcCCCEEEE
Q 007903 226 -DGVDYGATGE------VKKVDVTRMRERLDGGCLVILSNLG----YSSSGEV----LNCNTYEVATACALAIEADKLIC 290 (585)
Q Consensus 226 -~g~d~g~~G~------v~~v~~~~I~~lL~~G~IPVi~~v~----~~~~G~~----~nid~D~lAa~lA~~L~AdkLIi 290 (585)
+...+||.-. ++.++.+.|+.||+.|.|+|.++-+ +.+++++ .|+|+|++|+.+|.+|+||+||+
T Consensus 150 ~~d~~~~~rrvv~sp~p~~iv~~~~I~~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIi 229 (310)
T TIGR00746 150 KEDAGRGWRRVVPSPRPKDIVEAETIKTLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVI 229 (310)
T ss_pred eecCCCcceEeecCCCchhhccHHHHHHHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEE
Confidence 1112344432 2468899999999999865555322 2233433 48999999999999999999999
Q ss_pred eecccccC-----CCCcccccccHHHHHHHHHhhchhhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhc
Q 007903 291 IIDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIA 365 (585)
Q Consensus 291 lTDV~gl~-----~~~~lI~~it~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (585)
||||||++ +++++|++++.+|++.++.++
T Consensus 230 LTDVdGVy~~~~~p~a~~i~~it~~e~~~~~~~g---------------------------------------------- 263 (310)
T TIGR00746 230 LTDVDAVYINYGKPDEKALREVTVEELEDYYKAG---------------------------------------------- 263 (310)
T ss_pred EeCCCceeCCCCCCCCcCCcCcCHHHHHHHHhcC----------------------------------------------
Confidence 99999984 468999999998888876321
Q ss_pred cccCCccccCCCCCcccccccccccccccccccCcHHHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeec
Q 007903 366 TFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (585)
Q Consensus 366 ~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~ 444 (585)
.|++| | |.+||+||..+++.|+.+++|++ ++. +.+++.++ .||+|.
T Consensus 264 ------~~~tG-g---------------------M~~Kl~AA~~~~~~g~~~v~I~~---~~~-i~~~l~G~-~GT~I~ 309 (310)
T TIGR00746 264 ------HFAAG-S---------------------MGPKVEAAIEFVESGGKRAIITS---LEN-AVEALEGK-AGTRVT 309 (310)
T ss_pred ------CcCCC-C---------------------cHHHHHHHHHHHHhCCCeEEEec---hHH-HHHHHCCC-CCcEEe
Confidence 13345 5 89999999999999988899998 344 66777777 899985
No 27
>PRK09411 carbamate kinase; Reviewed
Probab=99.97 E-value=2.3e-29 Score=256.25 Aligned_cols=245 Identities=22% Similarity=0.202 Sum_probs=190.9
Q ss_pred CeEEEEeCCccCCCCC-----------hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHH
Q 007903 100 GTFVVIISGEIVSSPY-----------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESL 168 (585)
Q Consensus 100 k~iVIKlGGs~l~~~~-----------l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l 168 (585)
+++||.||||+|..+. .+..++.|+.|.+. +++||+||+|||++.++.+...... .++.+|
T Consensus 2 ~~iVvAlGGNAl~~~g~~~~~~~q~~~v~~~a~~ia~l~~~-~~~vitHGNGPQVG~l~~~~~~~~~-------~~~~pl 73 (297)
T PRK09411 2 KTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARS-YRLAIVHGNGPQVGLLALQNLAWKE-------VEPYPL 73 (297)
T ss_pred CeEEEEcCchhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHc-CCEEEEeCCccHHHHHHHHHHhhcC-------CCCCCc
Confidence 6899999999997622 46789999999887 9999999999999988766443321 255678
Q ss_pred HHH-HHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcce----eEEeeecCcceee-eeecccc------------cc---
Q 007903 169 AAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWH----EVGVSVASGNFLA-AKRKGVV------------DG--- 227 (585)
Q Consensus 169 ~~~-~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~----av~l~~~dg~~~~-a~~~g~~------------~g--- 227 (585)
+++ .++.|.+.|+|++.|++ .+++.++. ++.++..|..|-. .||.|.+ +|
T Consensus 74 d~~~a~sqG~iGy~l~q~l~~---------~~~~~~v~t~~Tq~~Vd~~DpaF~~PtKpiG~~y~~e~a~~l~~e~g~~~ 144 (297)
T PRK09411 74 DVLVAESQGMIGYMLAQSLSA---------QPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQM 144 (297)
T ss_pred hhhhhhcccHHHHHHHHHHHH---------cCCCCCeEEEEEEEEECCCCccccCCCCccCCccCHHHHHHHHHhcCCEE
Confidence 876 67999999999998743 36555443 4667888877776 3555531 11
Q ss_pred -ccCcceeeE-------EEecHHHHHHHHcCCCeEEEc-----CCccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecc
Q 007903 228 -VDYGATGEV-------KKVDVTRMRERLDGGCLVILS-----NLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDG 294 (585)
Q Consensus 228 -~d~g~~G~v-------~~v~~~~I~~lL~~G~IPVi~-----~v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV 294 (585)
.|-++.++| +.+|.+.|+.||++|+|||++ |++.+.+|...|+|+|.+|+.||.+|+||+|||||||
T Consensus 145 ~~dg~g~rrVVpSP~P~~iVe~~~I~~Ll~~G~IVI~~gGGGIPV~~~~~G~e~vIDkD~~Aa~LA~~L~Ad~LIiLTDV 224 (297)
T PRK09411 145 KRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDA 224 (297)
T ss_pred EecCCceEEEccCCCCcceECHHHHHHHHHCCCEEEecCCCCCCeEEcCCCeEEecCHHHHHHHHHHHhCCCEEEEEeCc
Confidence 232345677 899999999999999999998 6766666888999999999999999999999999999
Q ss_pred cccC-----CCCcccccccHHHHHHHHHhhchhhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccC
Q 007903 295 PILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNN 369 (585)
Q Consensus 295 ~gl~-----~~~~lI~~it~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (585)
||++ +++++|++++.+|+++++..
T Consensus 225 dGV~~n~~~p~~~~I~~it~~e~~~~~~~--------------------------------------------------- 253 (297)
T PRK09411 225 DAVYENWGTPQQRAIRHATPDELAPFAKA--------------------------------------------------- 253 (297)
T ss_pred hhhccCCCCCCCcCCCCcCHHHHHHhccC---------------------------------------------------
Confidence 9983 46789999999888666421
Q ss_pred CccccCCCCCcccccccccccccccccccCcHHHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeec
Q 007903 370 GVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (585)
Q Consensus 370 ~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~ 444 (585)
+| | |.||++||+.+++.|..+++|.+ ... +.+++.++ .||.|.
T Consensus 254 -----~G-g---------------------M~pKVeAA~~~v~~~g~~a~I~~---l~~-~~~~l~G~-~GT~I~ 296 (297)
T PRK09411 254 -----DG-A---------------------MGPKVTAVSGYVRSRGKPAWIGA---LSR-IEETLAGE-AGTCIS 296 (297)
T ss_pred -----CC-C---------------------cHHHHHHHHHHHHhCCCeEEECC---hhH-HHHHHCCC-CCeEEe
Confidence 25 5 89999999999998888888875 233 45666554 899984
No 28
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=99.97 E-value=2.2e-29 Score=253.24 Aligned_cols=192 Identities=33% Similarity=0.443 Sum_probs=165.0
Q ss_pred CeEEEEeCCccCCCC--ChHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHH-HHHHh
Q 007903 100 GTFVVIISGEIVSSP--YLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAAG 176 (585)
Q Consensus 100 k~iVIKlGGs~l~~~--~l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~-~~~~G 176 (585)
|++|||+||++++++ .+.+++++|+.|.+.|+++|||||||++++.+++.+++.+++.++.|+|+...+..+ +.+++
T Consensus 1 k~~ViK~GGs~l~~~~~~~~~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 80 (242)
T PF00696_consen 1 KTIVIKLGGSSLTDKDEELRELADDIALLSQLGIKVVVVHGGGSFTDELLEKYGIEPKFVDGSRVTDIETGLIITMAAAA 80 (242)
T ss_dssp SEEEEEE-HHGHSSHSHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHCTHTTSEETHHCHBHHHHHHHHHHHHHH
T ss_pred CeEEEEECchhhCCchHHHHHHHHHHHHHHhCCCeEEEEECChhhcCchHHhccCCcccchhhhhhhhhhhHHHHHHHhh
Confidence 689999999999987 589999999999999999999999999999999999999999989999999888876 56777
Q ss_pred HHHH-----HHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcCC
Q 007903 177 GIRM-----MIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGG 251 (585)
Q Consensus 177 ~i~~-----~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~G 251 (585)
++|. .+++. +..++.. .+++.+.+.++....+.. ..++.+.|+++|++|
T Consensus 81 ~l~~~~~~~~i~~~---------~~~~~~~----~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~l~~~ 134 (242)
T PF00696_consen 81 ELNRDALLDEIVSA---------GERLGAH----AVGLSLSDGGISAAKRDA-------------REVDKEAIRELLEQG 134 (242)
T ss_dssp HHHHHHHHHHHHHH---------HHHCTHH----EEEHHHTGGTEEEEEEES-------------SEEHHHHHHHHHHTT
T ss_pred ccccchhHHHHHHh---------hhhhhHH----HHhhhhhcccchhhhhhh-------------hhhHHHHHHHHHHCC
Confidence 8887 56554 4566654 677777776666543210 157899999999999
Q ss_pred CeEEEcCCc-cCCCCce---eeeChHHHHHHHHHHcCCCEEEEeecccccC-------CCCcccccccHHHHHHHHH
Q 007903 252 CLVILSNLG-YSSSGEV---LNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIR 317 (585)
Q Consensus 252 ~IPVi~~v~-~~~~G~~---~nid~D~lAa~lA~~L~AdkLIilTDV~gl~-------~~~~lI~~it~~e~~~li~ 317 (585)
.|||++|.+ .+.+|++ .++++|.+|++||.+|+|++|+|+|||||++ +++++|++|+.+|++++..
T Consensus 135 ~ipVv~g~~~~~~~g~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~~~~i~~l~~~e~~~l~~ 211 (242)
T PF00696_consen 135 IIPVVSGFAGIDDDGEVTTLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADPRIVPDARLIPELSYDEAEELAS 211 (242)
T ss_dssp SEEEEESEEEEETTSTEEEEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSSTTTSTTSEBESEEEHHHHHHHHH
T ss_pred CEEEEeCCcccCCCCCcccCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCCCCCCCCeeeeEeeHHHHHHHHh
Confidence 999999976 8889998 9999999999999999999999999999983 4789999999999999874
No 29
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.97 E-value=5.4e-29 Score=256.53 Aligned_cols=253 Identities=19% Similarity=0.219 Sum_probs=190.3
Q ss_pred eEEEEeCCccCCCCC-----------hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHH
Q 007903 101 TFVVIISGEIVSSPY-----------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLA 169 (585)
Q Consensus 101 ~iVIKlGGs~l~~~~-----------l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l~ 169 (585)
++||||||++|..+. ++..+++|+.|.+.|+++|||||+|||++.++....... ..+++..|+
T Consensus 1 rivialgGnal~~~~~~~~~~~q~~~~~~~a~~i~~l~~~g~~vvi~hGnGPqvG~i~~~~~~~~------~~~~~~pld 74 (308)
T cd04235 1 RIVVALGGNALLRRGEPGTAEEQRENVKIAAKALADLIKNGHEVVITHGNGPQVGNLLLQNEAAA------EKVPAYPLD 74 (308)
T ss_pred CEEEEecHHHhCCCCCCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhcc------ccCCCCCcc
Confidence 589999999996421 688999999999999999999999999999877654432 123445666
Q ss_pred HH-HHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcce----eEEeeecCcceee-eeecccc-c-----------c----
Q 007903 170 AA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWH----EVGVSVASGNFLA-AKRKGVV-D-----------G---- 227 (585)
Q Consensus 170 ~~-~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~----av~l~~~dg~~~~-a~~~g~~-~-----------g---- 227 (585)
.+ ...+|.+.+.|..+|++ .|.++|++.++. ++.+...|..|-. .||.|.. + |
T Consensus 75 ~~~a~~~G~ig~~~~~al~~-----~l~~~~~~~~v~t~~t~~~V~~~dpaf~~ptKpiG~~y~~~~a~~~~~~~g~~~~ 149 (308)
T cd04235 75 VCGAMSQGMIGYMLQQALDN-----ELPKRGIDKPVVTLVTQVVVDANDPAFKNPTKPIGPFYSEEEAEELAAEKGWTFK 149 (308)
T ss_pred hhcchhhHHHHHHHHHHHHH-----HHHHcCCCCceEEEEeEEEEcCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEE
Confidence 65 57899999999988875 889999887654 3446666666555 3555421 1 0
Q ss_pred --ccCccee------eEEEecHHHHHHHHcCCCeEEEc-----CCccCCCCcee----eeChHHHHHHHHHHcCCCEEEE
Q 007903 228 --VDYGATG------EVKKVDVTRMRERLDGGCLVILS-----NLGYSSSGEVL----NCNTYEVATACALAIEADKLIC 290 (585)
Q Consensus 228 --~d~g~~G------~v~~v~~~~I~~lL~~G~IPVi~-----~v~~~~~G~~~----nid~D~lAa~lA~~L~AdkLIi 290 (585)
..-||.- .++.++.+.|+.||++|+|||++ |+..+. +.++ ++|+|++|++||.+|+||+|++
T Consensus 150 ~d~~~g~rrvV~SP~P~~iv~~~~I~~Ll~~g~IpI~~GggGiPv~~~~-~~~~gveaVid~D~~AallA~~l~Ad~Lii 228 (308)
T cd04235 150 EDAGRGYRRVVPSPKPKDIVEIEAIKTLVDNGVIVIAAGGGGIPVVREG-GGLKGVEAVIDKDLASALLAEEINADLLVI 228 (308)
T ss_pred EeCCCCceeeeCCCCCccccCHHHHHHHHHCCCEEEEECCCccCEEEcC-CceeeeeeccCccHHHHHHHHHcCCCEEEE
Confidence 0122332 23678899999999999999999 554443 4444 5799999999999999999999
Q ss_pred eecccccC-----CCCcccccccHHHHHHHHHhhchhhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhc
Q 007903 291 IIDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIA 365 (585)
Q Consensus 291 lTDV~gl~-----~~~~lI~~it~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (585)
+|||||++ +++++|++++.+|+.+++.++.
T Consensus 229 lTdVdGVy~~~~~pda~~i~~Is~~e~~~l~~~g~--------------------------------------------- 263 (308)
T cd04235 229 LTDVDNVYINFGKPNQKALEQVTVEELEKYIEEGQ--------------------------------------------- 263 (308)
T ss_pred EecCCeEECCCCCCCCeEcCCcCHHHHHHHHhcCc---------------------------------------------
Confidence 99999983 4689999999999888764321
Q ss_pred cccCCccccCCCCCcccccccccccccccccccCcHHHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeec
Q 007903 366 TFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (585)
Q Consensus 366 ~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~ 444 (585)
|.+| | |.+|+++|+.+++.|...++|.+ .+. +.+++.++ .||.|.
T Consensus 264 -------~~tG-G---------------------M~pKv~aA~~~a~~gg~~v~I~~---~~~-i~~aL~G~-~GT~I~ 308 (308)
T cd04235 264 -------FAPG-S---------------------MGPKVEAAIRFVESGGKKAIITS---LEN-AEAALEGK-AGTVIV 308 (308)
T ss_pred -------cccC-C---------------------cHHHHHHHHHHHHhCCCeEEECC---HHH-HHHHHCCC-CCeEEC
Confidence 2345 5 89999999999998877788977 334 55666655 899873
No 30
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=99.97 E-value=2.4e-29 Score=266.51 Aligned_cols=292 Identities=18% Similarity=0.233 Sum_probs=203.1
Q ss_pred CCeEEEEeCCccCCCCC-------hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHH
Q 007903 99 GGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA 171 (585)
Q Consensus 99 ~k~iVIKlGGs~l~~~~-------l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~ 171 (585)
.+++|||+||+++++++ +..++++|+.|++.|+++||||||+++++. .+++.. ++.+++..++
T Consensus 5 ~kriVIKiGgs~L~~~~~~l~~~~i~~la~~I~~l~~~G~~vvlVsSGava~G~--~~l~~~----~~~~~~~~qa---- 74 (368)
T PRK13402 5 WKRIVVKVGSSLLTPHHQGCSSHYLLGLVQQIVYLKDQGHQVVLVSSGAVAAGY--HKLGFI----DRPSVPEKQA---- 74 (368)
T ss_pred CcEEEEEEchhhccCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCChhhcCc--cccCCC----CCCCccHHHH----
Confidence 47999999999998642 689999999999999999999999987765 445532 2335554433
Q ss_pred HHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEec-HHHHHHHHcC
Q 007903 172 MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVD-VTRMRERLDG 250 (585)
Q Consensus 172 ~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~-~~~I~~lL~~ 250 (585)
++++||.. ++..|.. .|+++|++ +.++...+..|...+ +..+ .+.|+.||+.
T Consensus 75 laavGq~~--l~~~~~~-----~f~~~g~~----~aqvLlT~~d~~~~~----------------~y~n~~~~l~~LL~~ 127 (368)
T PRK13402 75 MAAAGQGL--LMATWSK-----LFLSHGFP----AAQLLLTHGDLRDRE----------------RYINIRNTINVLLER 127 (368)
T ss_pred HHHhhHHH--HHHHHHH-----HHHHCCCe----EEEEEEecchhhhHH----------------HHHHHHHHHHHHHHC
Confidence 45678876 6666643 78999987 333322222221110 0112 3799999999
Q ss_pred CCeEEEcCC-ccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccC---C----CCcccccccH--HHHHHHHHhhc
Q 007903 251 GCLVILSNL-GYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD---E----SGHLIRFLTL--QEADSLIRQRV 320 (585)
Q Consensus 251 G~IPVi~~v-~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~---~----~~~lI~~it~--~e~~~li~~~~ 320 (585)
|+|||+++. .+. ..++.+.|+|++|+.+|.+|+||.|+++|||||++ | ++++|++|+. +|+..+..
T Consensus 128 g~IPIinenD~v~-~~el~~GdnD~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~--- 203 (368)
T PRK13402 128 GILPIINENDAVT-TDRLKVGDNDNLSAMVAALADADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAG--- 203 (368)
T ss_pred CcEEEEeCCCcEe-ecccccCChHHHHHHHHHHhCCCEEEEEecCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhc---
Confidence 999999962 222 23566789999999999999999999999999983 3 6899999985 34433321
Q ss_pred hhhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccCc
Q 007903 321 KQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGY 400 (585)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m 400 (585)
+.++.+++| | |
T Consensus 204 -----------------------------------------------~~~s~~gtG-G---------------------M 214 (368)
T PRK13402 204 -----------------------------------------------GAGSNVGTG-G---------------------M 214 (368)
T ss_pred -----------------------------------------------ccccCcCcC-C---------------------c
Confidence 122345566 6 8
Q ss_pred HHHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeeccccc-ccccccc-----------ccCHHHHHHHHHH
Q 007903 401 LSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLY-EGTRTAK-----------VTDLSGIKQIIQP 468 (585)
Q Consensus 401 ~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~~d~~-~~IR~at-----------~~D~~~I~~Li~~ 468 (585)
.+||+||..|.+.|++ ++|++|..++. |.+++.++..||+|.+... ..-|+.+ .-|..+..+|
T Consensus 215 ~~Kl~Aa~~a~~~gi~-v~I~~g~~~~~-l~~~l~g~~~GT~i~~~~~~~~~rk~Wi~~~~~~~G~i~vd~ga~~al--- 289 (368)
T PRK13402 215 RTKIQAAKIAMSHGIE-TFIGNGFTADI-FNQLLKGQNPGTYFTPEEKPMQEKKHWMAHTSGPQGEIVVENDFDRAL--- 289 (368)
T ss_pred hHHHHHHHHHHHcCCc-EEEEcCCCchH-HHHHhcCCCCceEEecCCCCccHHHHHHhCCCCCCeeEEECccHHHHH---
Confidence 9999999999999998 89999999986 6778888889999976432 2222222 2344455554
Q ss_pred HHHc-cccccCCHHHHHhcc---CeEEEEEECCeEEEEEEEe
Q 007903 469 LVES-GALVRRTDEELLKAL---DSFYVVEREGQIIACAALF 506 (585)
Q Consensus 469 ~~~~-~~~~~~~~e~l~~~i---~~~~Va~~dg~IVG~~~l~ 506 (585)
... ..++|.....++..| +.+-+...+|+.+|.+...
T Consensus 290 -~~~~~sLl~~gi~~v~g~F~~gd~v~i~~~~g~~~~rg~~~ 330 (368)
T PRK13402 290 -DNHSEQLTSDDVVEIKGDFSVGDTILVRKGDGTKLAKGKSN 330 (368)
T ss_pred -HhcCCcccccceEEEeCEecCCCEEEEECCCCCEEEEEEcc
Confidence 222 234444444455555 4566667778888887776
No 31
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=99.97 E-value=1.1e-28 Score=263.19 Aligned_cols=293 Identities=20% Similarity=0.259 Sum_probs=206.8
Q ss_pred CCeEEEEeCCccCCCCC-------hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHH
Q 007903 99 GGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA 171 (585)
Q Consensus 99 ~k~iVIKlGGs~l~~~~-------l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~ 171 (585)
.+++|||+||++++++. +..++++|+.+++.|+++||||||+ +...+..++++.++ ......+ +
T Consensus 8 ~~~iVIKiGGs~l~~~~~~l~~~~i~~la~~I~~l~~~g~~vViV~sGa--i~~g~~~l~l~~~~------~~~~~~q-a 78 (372)
T PRK05429 8 ARRIVVKVGSSLLTGGGGGLDRARIAELARQIAALRAAGHEVVLVSSGA--VAAGRERLGLPERP------KTLAEKQ-A 78 (372)
T ss_pred CCEEEEEeChhhccCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEcccH--hhhhHhhcCCCCCC------CchHHHH-H
Confidence 47999999999998732 6899999999999999999999984 55666677776432 1222222 3
Q ss_pred HHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEec-HHHHHHHHcC
Q 007903 172 MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVD-VTRMRERLDG 250 (585)
Q Consensus 172 ~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~-~~~I~~lL~~ 250 (585)
+++.||.. ++..|. ..|+++|++ +.++...+..|.. +.+.+| .+.|+.||+.
T Consensus 79 ~aavGq~~--L~~~~~-----~~l~~~gi~----~~qil~t~~d~~~----------------~~~~ln~~~~i~~Ll~~ 131 (372)
T PRK05429 79 AAAVGQSR--LMQAYE-----ELFARYGIT----VAQILLTRDDLED----------------RERYLNARNTLRTLLEL 131 (372)
T ss_pred HHHHhHHH--HHHHHH-----HHHHHCCCC----EEEEEeehhHhhh----------------hhHhhhHHHHHHHHHHC
Confidence 45677744 555553 378999987 4443222222221 112345 5899999999
Q ss_pred CCeEEEcCC-ccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccC-------CCCcccccccH--HHHHHHHHhhc
Q 007903 251 GCLVILSNL-GYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTL--QEADSLIRQRV 320 (585)
Q Consensus 251 G~IPVi~~v-~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~-------~~~~lI~~it~--~e~~~li~~~~ 320 (585)
|+|||+++. .+. ..++.++|+|++|++||.+|+||+|+|+|||||++ |++++|++++. +|+++++..
T Consensus 132 g~IPVi~~nd~v~-~~~l~~gd~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~-- 208 (372)
T PRK05429 132 GVVPIINENDTVA-TDEIKFGDNDTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGG-- 208 (372)
T ss_pred CCEEEEcCCCccc-eecccccChHHHHHHHHHHcCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcC--
Confidence 999999852 222 12456789999999999999999999999999983 35899999986 456555421
Q ss_pred hhhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccCc
Q 007903 321 KQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGY 400 (585)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m 400 (585)
.++.+++| | |
T Consensus 209 ------------------------------------------------~~~~~gtG-G---------------------M 218 (372)
T PRK05429 209 ------------------------------------------------AGSGLGTG-G---------------------M 218 (372)
T ss_pred ------------------------------------------------CCCCcCcC-C---------------------c
Confidence 11234456 5 8
Q ss_pred HHHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeeccccc-ccccc-----------ccccCHHHHHHHHHH
Q 007903 401 LSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLY-EGTRT-----------AKVTDLSGIKQIIQP 468 (585)
Q Consensus 401 ~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~~d~~-~~IR~-----------at~~D~~~I~~Li~~ 468 (585)
.+||+||..|.+.|++ ++|+||..++. |.+++.+++.||+|.+... ..-|+ ...-|-.+...|
T Consensus 219 ~~Kl~aa~~a~~~Gi~-v~I~~g~~~~~-l~~~l~g~~~GT~i~~~~~~~~~~k~wi~~~~~~~g~i~vd~gA~~al--- 293 (372)
T PRK05429 219 ATKLEAARIATRAGIP-VVIASGREPDV-LLRLLAGEAVGTLFLPQEKPLSARKRWIAGALQPAGEIVVDAGAVKAL--- 293 (372)
T ss_pred HHHHHHHHHHHHCCCe-EEEEcCCCccH-HHHHhcCCCCCEEEeeCCccchHHHHHHhcCCCCCCeEEECccHHHHH---
Confidence 9999999999999998 99999999986 7888888899999986532 22222 223354555555
Q ss_pred HHHc-cccccCCHHHHHhcc---CeEEEEEECCeEEEEEEEe
Q 007903 469 LVES-GALVRRTDEELLKAL---DSFYVVEREGQIIACAALF 506 (585)
Q Consensus 469 ~~~~-~~~~~~~~e~l~~~i---~~~~Va~~dg~IVG~~~l~ 506 (585)
... ..+++.....++..+ +.+.+...+|+.+|.+...
T Consensus 294 -~~~g~sLl~~Gi~~v~g~f~~gd~V~i~~~~g~~va~G~~~ 334 (372)
T PRK05429 294 -LERGKSLLPAGVTAVEGDFSRGDVVRIVDPDGREIARGLVN 334 (372)
T ss_pred -HhcCCccCccchhheECcccCCCEEEEECCCCCEEEEEEec
Confidence 222 234444556666666 5677778889999998876
No 32
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=99.96 E-value=2.7e-28 Score=242.23 Aligned_cols=257 Identities=19% Similarity=0.195 Sum_probs=200.6
Q ss_pred CeEEEEeCCccCCCCC-----------hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHH
Q 007903 100 GTFVVIISGEIVSSPY-----------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESL 168 (585)
Q Consensus 100 k~iVIKlGGs~l~~~~-----------l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l 168 (585)
++|||.||||+|..+. ++..+++|+.|.+.|+++||+||+|||++.++.......+.. -+++..|
T Consensus 1 ~~iVvALGGNAll~~g~~~tae~Q~~~v~~ta~~i~~l~~~g~e~VitHGNGPQVG~l~lq~~aa~~~~----~~p~~PL 76 (312)
T COG0549 1 KRIVVALGGNALLQRGEPLTAEAQYEAVKITAEQIADLIASGYEVVITHGNGPQVGLLLLQNEAADSEK----GVPAYPL 76 (312)
T ss_pred CeEEEEecchhhcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCCchHHHHHHHhhhhcccc----CCCCccH
Confidence 5799999999997641 678899999999999999999999999999877654422111 1345677
Q ss_pred HHH-HHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcce----eEEeeecCcceee-eeecccc-----------------
Q 007903 169 AAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWH----EVGVSVASGNFLA-AKRKGVV----------------- 225 (585)
Q Consensus 169 ~~~-~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~----av~l~~~dg~~~~-a~~~g~~----------------- 225 (585)
+.+ .++.|.+.++|.++|++ .|.++|++.++. ++.+...|..|.. .||.|++
T Consensus 77 d~~~AmsQG~IGy~l~qal~n-----~l~~~~~~~~v~tvvTqv~VD~nDPAF~nPtKpIGpfY~~eea~~l~~~~gw~~ 151 (312)
T COG0549 77 DVLVAMSQGMIGYMLQQALRN-----ELPRRGLEKPVVTVVTQVEVDANDPAFLNPTKPIGPFYSEEEAEELAKEYGWVF 151 (312)
T ss_pred HHHhHhhhhHHHHHHHHHHHH-----HHhhcCCCCceeEEEEEEEEcCCCccccCCCCCCCCCcCHHHHHHHHhhcCcEE
Confidence 775 67999999999999976 788889765543 4668888888887 4666742
Q ss_pred -ccccCcceee------EEEecHHHHHHHHcCCCeEEEc-----CCccCCC---CceeeeChHHHHHHHHHHcCCCEEEE
Q 007903 226 -DGVDYGATGE------VKKVDVTRMRERLDGGCLVILS-----NLGYSSS---GEVLNCNTYEVATACALAIEADKLIC 290 (585)
Q Consensus 226 -~g~d~g~~G~------v~~v~~~~I~~lL~~G~IPVi~-----~v~~~~~---G~~~nid~D~lAa~lA~~L~AdkLIi 290 (585)
+..+.||... ++.++.+.|+.|++.|.++|.+ |+..+.. |---+||.|..++.||..++||.||+
T Consensus 152 keD~~rG~RRVVpSP~P~~IvE~~~Ik~L~~~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liI 231 (312)
T COG0549 152 KEDAGRGYRRVVPSPKPVRIVEAEAIKALLESGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLII 231 (312)
T ss_pred EecCCCCeeEecCCCCCccchhHHHHHHHHhCCCEEEEeCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEE
Confidence 1123344432 3678899999999999999998 3444443 44568999999999999999999999
Q ss_pred eecccccC-----CCCcccccccHHHHHHHHHhhchhhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhc
Q 007903 291 IIDGPILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIA 365 (585)
Q Consensus 291 lTDV~gl~-----~~~~lI~~it~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (585)
|||||.++ |+.+.+++++.+|++++++++
T Consensus 232 LTdVd~Vy~n~gkp~q~~L~~v~~~e~~~yl~eg---------------------------------------------- 265 (312)
T COG0549 232 LTDVDAVYVNFGKPNQQALDRVTVDEMEKYLAEG---------------------------------------------- 265 (312)
T ss_pred EeccchheecCCCccchhhcccCHHHHHHHHhcC----------------------------------------------
Confidence 99999873 678999999999999998762
Q ss_pred cccCCccccCCCCCcccccccccccccccccccCcHHHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeec
Q 007903 366 TFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (585)
Q Consensus 366 ~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~ 444 (585)
.||.|+ |.||++||+.+++++-+++.|.+- +. +.+.+ ....||.|.
T Consensus 266 -------------------~Fa~GS---------M~PKVeAai~Fv~~~gk~A~ItsL--e~--~~~~l-~g~~GT~I~ 311 (312)
T COG0549 266 -------------------QFAAGS---------MGPKVEAAISFVENTGKPAIITSL--EN--AEAAL-EGKAGTVIV 311 (312)
T ss_pred -------------------CCCCCC---------ccHHHHHHHHHHHcCCCceEECcH--HH--HHHHh-ccCCCcEec
Confidence 256666 999999999999999998888762 21 34444 567899985
No 33
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=99.96 E-value=8.6e-29 Score=254.65 Aligned_cols=246 Identities=17% Similarity=0.179 Sum_probs=174.5
Q ss_pred CCeEEEEeCCccCCCCC--------hHHHHHHHHHHHHCCCeEE-EEeCchHHHHHHHHHcCC-cc----cccCCccCCC
Q 007903 99 GGTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFV-LVPGTHVQIDKLLSERGH-EA----KYLGRYRITD 164 (585)
Q Consensus 99 ~k~iVIKlGGs~l~~~~--------l~~l~~~Ia~L~~~G~~vV-lVhGgg~~i~~~l~~~g~-~~----~~~~g~rvt~ 164 (585)
.+++|||+||++|++++ +..++++|+.|++.|+++| |+||++.+.+..+...+. .. ....+.++..
T Consensus 8 ~~~iVvKiGss~lt~~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVssGAv~~G~~~l~~~~~~~~~~~~~~~g~~~~~~ 87 (284)
T cd04256 8 AKRIVVKLGSAVVTREDECGLALGRLASIVEQVSELQSQGREVILVTSGAVAFGKQRLRHEILLSSSMRQTLKSGQLKDM 87 (284)
T ss_pred CCEEEEEeCchhccCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEeeCcHHhChHHhhhccccccchhhhcccccccCC
Confidence 48999999999998753 6899999999999999999 666667666666654332 00 0111112222
Q ss_pred HHHHH--HHHHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHH
Q 007903 165 SESLA--AAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVT 242 (585)
Q Consensus 165 ~~~l~--~~~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~ 242 (585)
+..+. .+.+++||.. |++.|++ .|.+++++ +.++-++-. ||.... ......+
T Consensus 88 ~~~~~~~qa~aa~gq~~--L~~~y~~-----~f~~~~~~--~~q~llt~~----------------d~~~~~-~~~~~~~ 141 (284)
T cd04256 88 PQMELDGRACAAVGQSG--LMALYEA-----MFTQYGIT--VAQVLVTKP----------------DFYDEQ-TRRNLNG 141 (284)
T ss_pred cchhHHHHHHHHcccHH--HHHHHHH-----HHHHcCCc--HHHeeeecc----------------ccccHH-HHHHHHH
Confidence 22222 3467888876 8888875 89999987 223322221 222110 1123468
Q ss_pred HHHHHHcCCCeEEEcC-CccC------CCCcee--eeChHHHHHHHHHHcCCCEEEEeecccccC------CCCcccccc
Q 007903 243 RMRERLDGGCLVILSN-LGYS------SSGEVL--NCNTYEVATACALAIEADKLICIIDGPILD------ESGHLIRFL 307 (585)
Q Consensus 243 ~I~~lL~~G~IPVi~~-v~~~------~~G~~~--nid~D~lAa~lA~~L~AdkLIilTDV~gl~------~~~~lI~~i 307 (585)
.|+.||+.|+|||+++ .++. .+|+.+ ++|+|++|+++|.+++||+||++|||||++ |++++|+++
T Consensus 142 ~l~~lL~~g~iPVi~~nD~v~~~~~~~~~~~~~~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~a~~I~~i 221 (284)
T cd04256 142 TLEELLRLNIIPIINTNDAVSPPPEPDEDLQGVISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPGSDDAKLIHTF 221 (284)
T ss_pred HHHHHHHCCCEEEEeCCCcccccccccccccccccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCCCCCCeEcccc
Confidence 9999999999999985 2222 234444 489999999999999999999999999983 358999999
Q ss_pred cHHHHHHHHHhhchhhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccc
Q 007903 308 TLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFA 387 (585)
Q Consensus 308 t~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a 387 (585)
+..+.+.+... .++.+++| |
T Consensus 222 ~~~~~~~~~~~--------------------------------------------------~~s~~gtG-G--------- 241 (284)
T cd04256 222 YPGDQQSITFG--------------------------------------------------TKSRVGTG-G--------- 241 (284)
T ss_pred cHhHHHHhhcc--------------------------------------------------cccCcccC-C---------
Confidence 97665433211 11233456 5
Q ss_pred cccccccccccCcHHHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeec
Q 007903 388 IGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (585)
Q Consensus 388 ~~~~~~~~~~~~m~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~ 444 (585)
|.+||+||..|.+.|++ ++|++|..++. |.+++.++..||+|.
T Consensus 242 ------------M~~Kl~Aa~~a~~~Gi~-v~I~~G~~~~~-i~~~l~G~~~GT~~~ 284 (284)
T cd04256 242 ------------MEAKVKAALWALQGGTS-VVITNGMAGDV-ITKILEGKKVGTFFT 284 (284)
T ss_pred ------------cHHHHHHHHHHHHCCCe-EEEEcCCCccH-HHHHHcCCCCCEEeC
Confidence 89999999999999998 89999999987 678888889999983
No 34
>PRK12354 carbamate kinase; Reviewed
Probab=99.96 E-value=9.9e-29 Score=253.59 Aligned_cols=252 Identities=20% Similarity=0.188 Sum_probs=184.7
Q ss_pred CeEEEEeCCccCCCCC-----------hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHH
Q 007903 100 GTFVVIISGEIVSSPY-----------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESL 168 (585)
Q Consensus 100 k~iVIKlGGs~l~~~~-----------l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l 168 (585)
.++|||||||+|.++. ++..++.|+.|.+ |+++||+||+|||++.++.+..... ..++.+|
T Consensus 1 ~~iVialGGnal~~~~~~~~~~~~~~~v~~~a~~ia~~~~-~~~vvi~HGnGpqvG~~~~~~~~~~-------~~~~~pl 72 (307)
T PRK12354 1 MRIVVALGGNALLRRGEPLTAENQRANIRIAAEQIAKIAR-EHELVIVHGNGPQVGLLALQNAAYK-------DVTPYPL 72 (307)
T ss_pred CeEEEEeccHHhCCCCCCcCHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCccHHhHHHHHHHHhc-------CCCCCCc
Confidence 3799999999998743 4578899999887 9999999999999986654432221 1144566
Q ss_pred HHH-HHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceee-eeecccc----------------ccccC
Q 007903 169 AAA-MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLA-AKRKGVV----------------DGVDY 230 (585)
Q Consensus 169 ~~~-~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~-a~~~g~~----------------~g~d~ 230 (585)
+.+ .++.|.+.++|++.|.+ +|.+..+.+-+.++.+...|..|-. .|+.|++ -..|-
T Consensus 73 ~~~~a~sqg~iGy~l~q~l~~-----~l~~~~v~tivtq~~Vd~~dpAf~~ptKpiG~~y~~~~a~~~~~e~g~~~~~dg 147 (307)
T PRK12354 73 DVLGAETEGMIGYMLEQELGN-----LLPERPVATLLTQVEVDANDPAFANPTKPIGPVYDEAEAERLAAEKGWTIKPDG 147 (307)
T ss_pred chhcccccchHHHHHHHHHHH-----HhcCCcceEEEEEEEEcCCCCccCCCCCCcCcccCHHHHHHHHHhcCCEEeecC
Confidence 665 56889999999998865 4544344333445667777776655 3444321 01221
Q ss_pred cceeeEE-------EecHHHHHHHHcCCCeEEEc-----CCccCCCCceee----eChHHHHHHHHHHcCCCEEEEeecc
Q 007903 231 GATGEVK-------KVDVTRMRERLDGGCLVILS-----NLGYSSSGEVLN----CNTYEVATACALAIEADKLICIIDG 294 (585)
Q Consensus 231 g~~G~v~-------~v~~~~I~~lL~~G~IPVi~-----~v~~~~~G~~~n----id~D~lAa~lA~~L~AdkLIilTDV 294 (585)
++.++|. .++.+.|+.||++|+|||++ |+..+.+++.++ +|+|.+|+.||.+|+||+|+|||||
T Consensus 148 ~g~rrVv~SP~P~~ive~~~I~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdV 227 (307)
T PRK12354 148 DYFRRVVPSPRPKRIVEIRPIRWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDV 227 (307)
T ss_pred CceEEEecCCCCcceeCHHHHHHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCC
Confidence 2344554 78999999999999998887 777766565554 6899999999999999999999999
Q ss_pred cccC-----CCCcccccccHHHHHHHHHhhchhhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccC
Q 007903 295 PILD-----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNN 369 (585)
Q Consensus 295 ~gl~-----~~~~lI~~it~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (585)
||++ +++++|++++.+|++++ .
T Consensus 228 dGVy~~~~~p~~k~i~~it~~e~~~~--~--------------------------------------------------- 254 (307)
T PRK12354 228 DAVYLDWGKPTQRAIAQATPDELREL--G--------------------------------------------------- 254 (307)
T ss_pred cceecCCCCCCCeECCCCCHHHHHhh--C---------------------------------------------------
Confidence 9983 45789999998887665 1
Q ss_pred CccccCCCCCcccccccccccccccccccCcHHHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeecccc
Q 007903 370 GVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDL 447 (585)
Q Consensus 370 ~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~~d~ 447 (585)
|.+| | |.+|++||+.+++.|..+++|.+ ... +.+++.++ .||+|.++.
T Consensus 255 ---f~~G-g---------------------M~pKV~AA~~~~~~gg~~viI~~---~~~-l~~al~G~-~GT~I~~~~ 302 (307)
T PRK12354 255 ---FAAG-S---------------------MGPKVEAACEFVRATGKIAGIGS---LED-IQAILAGE-AGTRISPET 302 (307)
T ss_pred ---CCcC-C---------------------hHHHHHHHHHHHHhCCCEEEECC---HHH-HHHHHCCC-CceEEecCC
Confidence 2245 5 89999999999998888888864 233 56777654 899997653
No 35
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=99.96 E-value=1.1e-27 Score=254.62 Aligned_cols=293 Identities=17% Similarity=0.219 Sum_probs=202.0
Q ss_pred CeEEEEeCCccCCCCC-------hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHHH
Q 007903 100 GTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAM 172 (585)
Q Consensus 100 k~iVIKlGGs~l~~~~-------l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~ 172 (585)
+++|||+||+++++++ +..++++|+.|++.|+++|||||||.. ..+..++++.+. .+....+ ++
T Consensus 1 ~riVIKiGgs~l~~~~~~~~~~~i~~la~~I~~l~~~g~~vvlV~sG~~~--~g~~~lg~~~~~------~~l~~~q-a~ 71 (363)
T TIGR01027 1 QRIVVKVGSSSLTGSSGSLDRSHIAELVEQVAALHAAGHEVVIVSSGAIA--AGFEALGLPERP------KTLAEKQ-AL 71 (363)
T ss_pred CeEEEEeccceEeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeCcHHh--cCccccCCCCCc------cchHHHH-HH
Confidence 4799999999999864 689999999999999999999999843 345566665421 1222222 35
Q ss_pred HHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecH-HHHHHHHcCC
Q 007903 173 EAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDV-TRMRERLDGG 251 (585)
Q Consensus 173 ~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~-~~I~~lL~~G 251 (585)
++.||.. ++..|. ..|.++|++ +.++ +++.. ||.. +.+..|. +.|+.||+.|
T Consensus 72 aa~Gq~~--l~~~~~-----~~l~~~Gi~----~aqi------llt~~--------d~~~--~~~~lna~~~i~~Ll~~g 124 (363)
T TIGR01027 72 AAVGQVR--LMQLYE-----QLFSQYGIK----VAQI------LLTRA--------DFSD--RERYLNARNTLEALLELG 124 (363)
T ss_pred HHhChHH--HHHHHH-----HHHHHcCCe----EEEE------EEecc--------chhh--HHHHHHHHHHHHHHHhCC
Confidence 6777744 566553 278999987 2222 12211 1110 1123444 8999999999
Q ss_pred CeEEEcC-CccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccC-------CCCcccccccHHH-HHHHHHhhchh
Q 007903 252 CLVILSN-LGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQE-ADSLIRQRVKQ 322 (585)
Q Consensus 252 ~IPVi~~-v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~-------~~~~lI~~it~~e-~~~li~~~~~~ 322 (585)
+|||+++ ..+.. .++.++|+|++|+.||.+|+||+|||+|||||++ |++++|++++..+ ....+..
T Consensus 125 ~iPVi~end~v~~-~~l~~gd~D~lAa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~---- 199 (363)
T TIGR01027 125 VVPIINENDTVAT-EEIKFGDNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAG---- 199 (363)
T ss_pred CEEEEeCCCceee-eecCcCChHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhc----
Confidence 9999984 22221 1344679999999999999999999999999983 3579999997532 1111111
Q ss_pred hhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccCcHH
Q 007903 323 SEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLS 402 (585)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~ 402 (585)
+.++.+++| | |.+
T Consensus 200 ---------------------------------------------~~~~~~gtG-G---------------------M~~ 212 (363)
T TIGR01027 200 ---------------------------------------------DSGSSVGTG-G---------------------MRT 212 (363)
T ss_pred ---------------------------------------------CCCcCcCcC-C---------------------chH
Confidence 012335566 5 899
Q ss_pred HHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeeccccc-ccccc-----------ccccCHHHHHHHHHHHH
Q 007903 403 ELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLY-EGTRT-----------AKVTDLSGIKQIIQPLV 470 (585)
Q Consensus 403 kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~~d~~-~~IR~-----------at~~D~~~I~~Li~~~~ 470 (585)
||+||..|.+.|++ ++|+++..++. |.+++.++..||.|.+... ..-|+ ...-|..+...| .
T Consensus 213 Kl~Aa~~a~~~gi~-v~I~~g~~~~~-l~~~l~g~~~GT~i~~~~~~~~~~k~wi~~~~~~~G~i~vD~gA~~al----~ 286 (363)
T TIGR01027 213 KLQAADLATRAGVP-VIIASGSKPEK-IADALEGAPVGTLFHAQARRLRNRKFWIAFASEPAGEITVDAGAEEAL----L 286 (363)
T ss_pred HHHHHHHHHHCCCe-EEEEeCCCccH-HHHHhcCCCCcEEEeeCCCCccHHHHHHhCCCCcCCeEEEChhHHHHH----H
Confidence 99999999999998 89999999886 6788888889999986422 22222 223466666666 2
Q ss_pred Hc-cccccCCHHHHHhcc---CeEEEEEECCeEEEEEEEe
Q 007903 471 ES-GALVRRTDEELLKAL---DSFYVVEREGQIIACAALF 506 (585)
Q Consensus 471 ~~-~~~~~~~~e~l~~~i---~~~~Va~~dg~IVG~~~l~ 506 (585)
.. ..+++.....++..| +.+.+...+|+.+|.+...
T Consensus 287 ~~g~sLl~~Gi~~v~g~F~~gd~v~i~~~~~~~ia~g~~~ 326 (363)
T TIGR01027 287 ERGKSLLPAGIVGVEGNFSRGEVVEILNPEGQDIGRGLVN 326 (363)
T ss_pred hcCCccCCccceeeECcccCCCEEEEECCCCCEEEEEEec
Confidence 22 234555556666666 5677777889999998876
No 36
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=99.96 E-value=1.2e-27 Score=242.79 Aligned_cols=233 Identities=21% Similarity=0.275 Sum_probs=168.2
Q ss_pred eEEEEeCCccCCCCC-------hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHHHH
Q 007903 101 TFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAME 173 (585)
Q Consensus 101 ~iVIKlGGs~l~~~~-------l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~ 173 (585)
++|||+||+++++++ +.+++++|+.+++.|+++||||||+...+ ...+++..++ ......+ +.+
T Consensus 1 ~iViK~GGs~i~~~~~~~~~~~i~~~~~~i~~~~~~~~~viiV~sg~~~~g--~~~~~~~~~~------~~~~~~~-~~~ 71 (251)
T cd04242 1 RIVVKVGSSLLTDEDGGLDLGRLASLVEQIAELRNQGKEVILVSSGAVAAG--RQRLGLEKRP------KTLPEKQ-ALA 71 (251)
T ss_pred CEEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEecCchhhC--hhhhccCcCC------CchhHHH-HHH
Confidence 589999999999864 78899999999999999999998643322 3344443221 1112223 345
Q ss_pred HHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEec-HHHHHHHHcCCC
Q 007903 174 AAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVD-VTRMRERLDGGC 252 (585)
Q Consensus 174 ~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~-~~~I~~lL~~G~ 252 (585)
+.||.. ++..|.. .|+++|++ +.++...+.+|..++. ..+ .+.|+.||+.|+
T Consensus 72 ~~Gq~~--l~~~~~~-----~l~~~Gi~----~~q~l~t~~~~~~~~~----------------~~~~~~~i~~ll~~g~ 124 (251)
T cd04242 72 AVGQSL--LMALYEQ-----LFAQYGIK----VAQILLTRDDFEDRKR----------------YLNARNTLETLLELGV 124 (251)
T ss_pred HHhHHH--HHHHHHH-----HHHHcCCe----EEEEEEehhHhcchHH----------------HHHHHHHHHHHHHCCC
Confidence 677743 6655532 78999987 3343333333322110 112 588999999999
Q ss_pred eEEEcCC-ccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccC-------CCCccccccc--HHHHHHHHHhhchh
Q 007903 253 LVILSNL-GYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLT--LQEADSLIRQRVKQ 322 (585)
Q Consensus 253 IPVi~~v-~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~-------~~~~lI~~it--~~e~~~li~~~~~~ 322 (585)
|||+++. .+. .+++.++|+|.+|++||.+|+||+|+|+|||||++ |++++|++++ .+|+.++...
T Consensus 125 iPVv~~~d~v~-~~~~~~~~~D~~A~~lA~~l~Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~---- 199 (251)
T cd04242 125 IPIINENDTVA-TEEIRFGDNDRLSALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGG---- 199 (251)
T ss_pred EEEEcCCCCee-eeccccCChHHHHHHHHHHcCCCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHHHHHHhcc----
Confidence 9999962 222 12456789999999999999999999999999983 3589999999 7777666311
Q ss_pred hhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccCcHH
Q 007903 323 SEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLS 402 (585)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~ 402 (585)
.++.+++| | |.+
T Consensus 200 ----------------------------------------------~~~~~~tg-g---------------------m~~ 211 (251)
T cd04242 200 ----------------------------------------------SGSSVGTG-G---------------------MRT 211 (251)
T ss_pred ----------------------------------------------cCcCcccC-C---------------------cHH
Confidence 11223455 5 899
Q ss_pred HHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeec
Q 007903 403 ELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (585)
Q Consensus 403 kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~ 444 (585)
||++|..|.+.|++ ++|+||..++. |.++|.+++.||+|.
T Consensus 212 Kl~a~~~a~~~gi~-v~I~~g~~~~~-i~~~l~g~~~GT~i~ 251 (251)
T cd04242 212 KLKAARIATEAGIP-VVIANGRKPDV-LLDILAGEAVGTLFL 251 (251)
T ss_pred HHHHHHHHHHCCCc-EEEEcCCCCCH-HHHHHcCCCCCeEeC
Confidence 99999999999998 99999999986 778888889999973
No 37
>PTZ00489 glutamate 5-kinase; Provisional
Probab=99.96 E-value=1.9e-27 Score=241.79 Aligned_cols=234 Identities=15% Similarity=0.191 Sum_probs=168.6
Q ss_pred CCeEEEEeCCccCCCCC------hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHHH
Q 007903 99 GGTFVVIISGEIVSSPY------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAM 172 (585)
Q Consensus 99 ~k~iVIKlGGs~l~~~~------l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~ 172 (585)
.+++|||+|||+++++. +..++++|+.|++ ++++||||||+...+ ...+++...+ -.-..++
T Consensus 8 ~~riVIKlG~Svit~~~~~~~~~~~~l~~~i~~l~~-~~~vilVssGava~g--~~~~~~~~~~---------~~~~qa~ 75 (264)
T PTZ00489 8 VKRIVVKVGSSILVDNQEIAAHRIEALCRFIADLQT-KYEVILVTSGAVAAG--YTKKEMDKSY---------VPNKQAL 75 (264)
T ss_pred CCEEEEEeccceeeCCCCcCHHHHHHHHHHHHHHhc-CCeEEEEecChHhcC--hhhcCCCccc---------cHHHHHH
Confidence 48899999999998754 6889999999986 799999998874333 3345544211 1123456
Q ss_pred HHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEec-HHHHHHHHcCC
Q 007903 173 EAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVD-VTRMRERLDGG 251 (585)
Q Consensus 173 ~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~-~~~I~~lL~~G 251 (585)
+++||.. |+..|. ..|.++|+. +.++.++..| +. .+.+..+ .+.|++||+.|
T Consensus 76 aaiGq~~--L~~~y~-----~~f~~~~~~--~aqiLlt~~d----------------~~--~~~~~~n~~~~l~~lL~~g 128 (264)
T PTZ00489 76 ASMGQPL--LMHMYY-----TELQKHGIL--CAQMLLAAYD----------------LD--SRKRTINAHNTIEVLISHK 128 (264)
T ss_pred HHhCHHH--HHHHHH-----HHHHhCCCe--EEEeeeeccc----------------cc--cchhhHHHHHHHHHHHHCC
Confidence 7889965 777764 378999987 2333333322 11 1112233 69999999999
Q ss_pred CeEEEcCCccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccC---C----CCcc---cccccHHHHHHHHHhhch
Q 007903 252 CLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD---E----SGHL---IRFLTLQEADSLIRQRVK 321 (585)
Q Consensus 252 ~IPVi~~v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~---~----~~~l---I~~it~~e~~~li~~~~~ 321 (585)
+|||+++.......++.+.|+|.+|+.||.+++||+||++|||||++ | ++++ |++++.+++.... +
T Consensus 129 ~VPIinend~~~~~e~~~gdnD~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~--~-- 204 (264)
T PTZ00489 129 VIPIINENDATALHELVFGDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEA--T-- 204 (264)
T ss_pred CEEEECCCCCcccceeEeCChHHHHHHHHHHhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhc--C--
Confidence 99999986544455788999999999999999999999999999983 2 3555 6677765542210 0
Q ss_pred hhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccCcH
Q 007903 322 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 401 (585)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~ 401 (585)
..+.+++| | |.
T Consensus 205 -----------------------------------------------~~~~~~tG-G---------------------M~ 215 (264)
T PTZ00489 205 -----------------------------------------------PNNRFATG-G---------------------IV 215 (264)
T ss_pred -----------------------------------------------cCCCcccC-C---------------------hH
Confidence 11223456 5 89
Q ss_pred HHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcC--CCceeeccc
Q 007903 402 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRD--GMGTMVASD 446 (585)
Q Consensus 402 ~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~--~~GT~i~~d 446 (585)
+||+||..|.+.|++ ++|++|..++. |.+++.++ ..||.|.+.
T Consensus 216 ~Kl~aa~~a~~~Gi~-v~I~~g~~~~~-i~~~l~g~~~~~GT~~~~~ 260 (264)
T PTZ00489 216 TKLQAAQFLLERGGK-MYLSSGFHLEK-ARDFLIGGSHEIGTLFYPR 260 (264)
T ss_pred HHHHHHHHHHHCCCC-EEEEeCCCchH-HHHHHcCCCCCCceEEeec
Confidence 999999999999997 89999999987 56776554 379999653
No 38
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=99.95 E-value=2.2e-27 Score=242.46 Aligned_cols=236 Identities=20% Similarity=0.224 Sum_probs=168.6
Q ss_pred CCeEEEEeCCccCCCCC-------hHHHHHHHHHHHHCCCeEEEE-eCchHHHHHHHHHcCCcccccCCccCCCHHHHHH
Q 007903 99 GGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLV-PGTHVQIDKLLSERGHEAKYLGRYRITDSESLAA 170 (585)
Q Consensus 99 ~k~iVIKlGGs~l~~~~-------l~~l~~~Ia~L~~~G~~vVlV-hGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~ 170 (585)
++++|||+||+++++++ +.+++++|+.+++.|+++||| ||++.+.+..+. +.. +..+...++
T Consensus 9 ~~~iViK~Ggs~l~~~~~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l~---~~~------~~~~~~~~~- 78 (266)
T PRK12314 9 AKRIVIKVGSSTLSYENGKINLERIEQLVFVISDLMNKGKEVILVSSGAIGAGLTKLK---LDK------RPTSLAEKQ- 78 (266)
T ss_pred CCEEEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeeCcccccceeec---ccc------CCCCHHHHH-
Confidence 57999999999999542 799999999999999999987 766666554442 221 111223333
Q ss_pred HHHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcC
Q 007903 171 AMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDG 250 (585)
Q Consensus 171 ~~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~ 250 (585)
+.++.||.. ++..|.. .|+++|++ ..++-++.. .|-. .+......+.|+.||+.
T Consensus 79 a~aa~Gq~~--l~~~~~~-----~~~~~g~~--~~q~llT~~--~~~~---------------~~~~~~~~~~l~~ll~~ 132 (266)
T PRK12314 79 ALAAVGQPE--LMSLYSK-----FFAEYGIV--VAQILLTRD--DFDS---------------PKSRANVKNTFESLLEL 132 (266)
T ss_pred HHHHHhHHH--HHHHHHH-----HHHHcCCe--EEEEEEecc--cccc---------------hHHHHHHHHHHHHHHHC
Confidence 346788854 7777753 89999986 223322221 1211 11122346899999999
Q ss_pred CCeEEEcC---CccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccC-------CCCcccccccH--HHHHHHHHh
Q 007903 251 GCLVILSN---LGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTL--QEADSLIRQ 318 (585)
Q Consensus 251 G~IPVi~~---v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~-------~~~~lI~~it~--~e~~~li~~ 318 (585)
|+|||+++ ++.++.|. .++|+|++|++||.+|+||+|+|+|||||++ |++++|++|+. .+..++..
T Consensus 133 g~IPVv~~nd~v~~~~~~~-~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~- 210 (266)
T PRK12314 133 GILPIVNENDAVATDEIDT-KFGDNDRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAG- 210 (266)
T ss_pred CCEEEEcCCCCeeeccccc-eecchHHHHHHHHHHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhc-
Confidence 99999994 44454443 4668999999999999999999999999983 35888888863 22222210
Q ss_pred hchhhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCccccccccccccccccccc
Q 007903 319 RVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLN 398 (585)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~ 398 (585)
..++.+++| |
T Consensus 211 -------------------------------------------------~~~~~~~tG-G-------------------- 220 (266)
T PRK12314 211 -------------------------------------------------GAGSKFGTG-G-------------------- 220 (266)
T ss_pred -------------------------------------------------cCCCCcccC-c--------------------
Confidence 012234456 5
Q ss_pred CcHHHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeecc
Q 007903 399 GYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (585)
Q Consensus 399 ~m~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~~ 445 (585)
|.+|++||..|.+.|++ ++|++|..++. |.+++.+++.||+|.+
T Consensus 221 -M~~Kl~aa~~a~~~gv~-v~I~~g~~~~~-i~~~l~g~~~GT~i~~ 264 (266)
T PRK12314 221 -MVTKLKAAKFLMEAGIK-MVLANGFNPSD-ILDFLEGESIGTLFAP 264 (266)
T ss_pred -hHHHHHHHHHHHHCCCe-EEEEcCCCchH-HHHHHcCCCCceEEcc
Confidence 89999999999999998 99999999998 6788888889999965
No 39
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=99.95 E-value=2.2e-26 Score=231.86 Aligned_cols=189 Identities=19% Similarity=0.233 Sum_probs=152.6
Q ss_pred eEEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeCc-hHHHHHHHHHcCCcccccCCccCCCHHHHHHHHHHHh-H
Q 007903 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGT-HVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAG-G 177 (585)
Q Consensus 101 ~iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhGg-g~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~~~G-~ 177 (585)
.+|||+||+++.+++ ++.++++|+.+.+.|+++|||||| |..++++++...... +.++...++++. +.| .
T Consensus 1 ~iViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l~~~~~~~~------~~~~~~~~~~i~-a~Ge~ 73 (239)
T cd04261 1 LIVQKFGGTSVASIERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEIS------PRPPARELDVLL-STGEQ 73 (239)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHHHHHHhc------cCCCHHHHHHHH-HHHHH
Confidence 489999999998865 899999999999999999999997 667777665421111 346777777753 445 4
Q ss_pred HHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcCCCeEEEc
Q 007903 178 IRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILS 257 (585)
Q Consensus 178 i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~G~IPVi~ 257 (585)
++..+... .|+++|++ ++++++.+..++++. +|+ .|++..++.+.|+.+++.|+|||++
T Consensus 74 ~~~~l~~~--------~l~~~g~~----a~~l~~~~~~l~~~~--------~~~-~~~i~~~~~~~l~~ll~~~~ipVi~ 132 (239)
T cd04261 74 VSIALLAM--------ALNRLGIK----AISLTGWQAGILTDG--------HHG-KARIIDIDPDRIRELLEEGDVVIVA 132 (239)
T ss_pred HHHHHHHH--------HHHhCCCC----eEEechhhCCEEecC--------CCC-cceechhhHHHHHHHHHcCCeEEEc
Confidence 55554332 57899987 789999887776654 232 5778888999999999999999999
Q ss_pred CC-ccCCCCceeee---ChHHHHHHHHHHcCCCEEEEeecccccC---C----CCcccccccHHHHHHHHH
Q 007903 258 NL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD---E----SGHLIRFLTLQEADSLIR 317 (585)
Q Consensus 258 ~v-~~~~~G~~~ni---d~D~lAa~lA~~L~AdkLIilTDV~gl~---~----~~~lI~~it~~e~~~li~ 317 (585)
++ +.+.+|+++++ |+|.+|+.+|.+|+||+|+++|||||++ | ++++|++++.+|++++..
T Consensus 133 G~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~tdV~GVy~~dP~~~~~a~~i~~i~~~ea~~l~~ 203 (239)
T cd04261 133 GFQGINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEMLEMAS 203 (239)
T ss_pred CccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCCCCCceEccccCHHHHHHHHh
Confidence 97 78889999999 9999999999999999999999999983 3 689999999999888753
No 40
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=99.95 E-value=2.5e-26 Score=232.20 Aligned_cols=190 Identities=18% Similarity=0.227 Sum_probs=157.7
Q ss_pred eEEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEe-----CchHHHHHHHHHcCCcccccCCccCCCHHHHHHHHHH
Q 007903 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVP-----GTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEA 174 (585)
Q Consensus 101 ~iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVh-----Ggg~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~~ 174 (585)
.+|||+||+++++++ +++++++|+.+.+.|+++|||| |||+++++.+..++.. .+.|+|. ++++.+ .+
T Consensus 1 ~~ViK~GGs~l~~~~~~~~~~~~I~~~~~~g~~~vvV~sa~g~~G~~~~~~~l~~~~~~----~~~~~t~-~~~~~~-~~ 74 (244)
T cd04260 1 IIVQKFGGTSVSTKERREQVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVYA----ENSDISP-RELDLL-MS 74 (244)
T ss_pred CEEEEECchhcCCHHHHHHHHHHHHHHHHCCCCeEEEEECCCCCCCchHHHHHHHHHHh----hcCCCCH-HHHHHH-HH
Confidence 379999999999876 7999999999999999988887 7888888876665432 2456655 467665 56
Q ss_pred HhHHHHH--HHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcCCC
Q 007903 175 AGGIRMM--IEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGC 252 (585)
Q Consensus 175 ~G~i~~~--L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~G~ 252 (585)
.|+++.. +++ .|+++|++ ++++++.|..++++.. |+ .|++..++.+.|+.+|+.|+
T Consensus 75 ~Ge~~~~~~~~~---------~l~~~Gi~----a~~l~~~~~~lit~~~--------~~-~~~v~~~~~~~l~~ll~~g~ 132 (244)
T cd04260 75 CGEIISAVVLTS---------TLRAQGLK----AVALTGAQAGILTDDN--------YS-NAKIIKVNPKKILSALKEGD 132 (244)
T ss_pred HhHHHHHHHHHH---------HHHhCCCC----eEEechHHcCEEecCC--------CC-ceeeeccCHHHHHHHHhCCC
Confidence 8887754 444 56899988 8999999988877542 33 47788899999999999999
Q ss_pred eEEEcCC-ccCCCCceeee---ChHHHHHHHHHHcCCCEEEEeecccccC-------CCCcccccccHHHHHHHHHh
Q 007903 253 LVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQ 318 (585)
Q Consensus 253 IPVi~~v-~~~~~G~~~ni---d~D~lAa~lA~~L~AdkLIilTDV~gl~-------~~~~lI~~it~~e~~~li~~ 318 (585)
|||++++ +.+.+|+++|+ ++|.+|+.||.+|+||+|+++|||||++ +++++|++|+.+|+++++..
T Consensus 133 VPVv~g~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~ 209 (244)
T cd04260 133 VVVVAGFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQ 209 (244)
T ss_pred EEEecCCcccCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHc
Confidence 9999996 88889999999 5999999999999999999999999983 36899999999999998754
No 41
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=99.95 E-value=3.7e-26 Score=230.26 Aligned_cols=189 Identities=18% Similarity=0.225 Sum_probs=154.4
Q ss_pred eEEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeC-chHHHHHHHHHcCCcccccCCccCCCHHHHHHHHHHHhH-
Q 007903 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPG-THVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGG- 177 (585)
Q Consensus 101 ~iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhG-gg~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~~~G~- 177 (585)
.+|||+||+++.++. ++.++++|+.+++.|+++||||| +|+.++.+++..+....+ .+.+.++++ .+.|+
T Consensus 1 ~iViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~~~~~~~~~------~~~~~~~~i-~~~Ge~ 73 (239)
T cd04246 1 IIVQKFGGTSVADIERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVSPR------PSPRELDML-LSTGEQ 73 (239)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHhccC------CCHHHHHHH-HHHhHH
Confidence 379999999998865 89999999999999999999998 588889888877665432 256677765 34565
Q ss_pred HHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcCCCeEEEc
Q 007903 178 IRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILS 257 (585)
Q Consensus 178 i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~G~IPVi~ 257 (585)
++..+... .|+++|++ ++++++.+..++++.+ |+ .|++..++.+.|++++++|.|||++
T Consensus 74 ~~~~~~~~--------~l~~~g~~----a~~l~~~~~~l~~~~~--------~~-~~~~~~~~~~~l~~ll~~g~ipVi~ 132 (239)
T cd04246 74 ISAALLAM--------ALNRLGIK----AISLTGWQAGILTDDH--------HG-NARIIDIDPKRILEALEEGDVVVVA 132 (239)
T ss_pred HHHHHHHH--------HHHhCCCC----eEEeccccCCEEecCC--------CC-ceeechhhHHHHHHHHhcCCEEEEc
Confidence 45443322 57899987 7889888877776542 22 4778888999999999999999999
Q ss_pred CC-ccCCCCceeee---ChHHHHHHHHHHcCCCEEEEeecccccC-------CCCcccccccHHHHHHHHH
Q 007903 258 NL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIR 317 (585)
Q Consensus 258 ~v-~~~~~G~~~ni---d~D~lAa~lA~~L~AdkLIilTDV~gl~-------~~~~lI~~it~~e~~~li~ 317 (585)
+. +.+.+|+++++ |+|.+|+.+|.+|+||+|+++|||||++ +++++|++++.+|+++++.
T Consensus 133 g~~~~~~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~tdV~GVy~~dP~~~~~a~~i~~l~~~e~~~l~~ 203 (239)
T cd04246 133 GFQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTADPRIVPKARKLDVISYDEMLEMAS 203 (239)
T ss_pred CccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcccCCHHHHHHHHh
Confidence 86 77888999999 8999999999999999999999999983 3689999999999888753
No 42
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=99.94 E-value=5.4e-27 Score=226.17 Aligned_cols=245 Identities=20% Similarity=0.218 Sum_probs=179.6
Q ss_pred CCeEEEEeCCccCCCCC--------hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCH---HH
Q 007903 99 GGTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDS---ES 167 (585)
Q Consensus 99 ~k~iVIKlGGs~l~~~~--------l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~---~~ 167 (585)
-++||||+|+++++++. +..++++++.|+..|++++||++|+.+.+.. ++..+.....-.|-|-. +.
T Consensus 9 a~rIVVKLGSavit~e~~~~laLgrla~IVEqV~~L~~~G~evilVSSGaVA~G~q--rLr~~~~~s~s~r~~l~~~~~l 86 (285)
T KOG1154|consen 9 AYRIVVKLGSAVITREDTCGLALGRLASIVEQVSELQRMGREVILVSSGAVAFGRQ--RLRQELLPSSSMRQTLKPQSEL 86 (285)
T ss_pred ceEEEEEecceEEECCCCccchHHHHHHHHHHHHHHHhcCceEEEEecchhhhhHH--HhhhhhccchhHHHhhCCccch
Confidence 37999999999999865 5789999999999999999999998776654 33333221111121111 23
Q ss_pred HHH-HHHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEec-HHHHH
Q 007903 168 LAA-AMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVD-VTRMR 245 (585)
Q Consensus 168 l~~-~~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~-~~~I~ 245 (585)
.+. +++++||-+ |++.|.. +|.++|+. ++++-++-.| |..-. .+.| .++|.
T Consensus 87 ~e~rA~AAvGQ~~--Lmalye~-----lF~Qy~~~--iAQvLvT~~D--i~d~~----------------~r~Nl~~Ti~ 139 (285)
T KOG1154|consen 87 AEKRACAAVGQSG--LMALYET-----LFTQYGIT--IAQVLVTRND--ILDEQ----------------QRKNLQNTIS 139 (285)
T ss_pred hhHHHHHHhCcch--HHHHHHH-----HHHHhccc--hheeeecCcc--hhhHH----------------HHHHHHHHHH
Confidence 333 578899977 8888864 89999987 4555544433 22111 1235 48999
Q ss_pred HHHcCCCeEEEcCC-ccCCCCceeeeC---hHHHHHHHHHHcCCCEEEEeecccccC---CCC---cccccccHHHHHHH
Q 007903 246 ERLDGGCLVILSNL-GYSSSGEVLNCN---TYEVATACALAIEADKLICIIDGPILD---ESG---HLIRFLTLQEADSL 315 (585)
Q Consensus 246 ~lL~~G~IPVi~~v-~~~~~G~~~nid---~D~lAa~lA~~L~AdkLIilTDV~gl~---~~~---~lI~~it~~e~~~l 315 (585)
+||..|.|||+|.. +++.. ++.+.| +|.+|+.+|..++||.||+||||+|++ |+. ++|+..+..+
T Consensus 140 eLL~m~viPIvNeNDavs~~-~~~~~D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd~~~~~li~~~~~~~---- 214 (285)
T KOG1154|consen 140 ELLSMNVIPIVNENDAVSPR-EIPFGDSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPDADPSKLIHTFSPGD---- 214 (285)
T ss_pred HHHhCCceeeecCCCccCCc-ccccCCCCcccHHHHHHHHHhccCEEEEEecccccccCCCCCCcceeeeeeccCC----
Confidence 99999999999953 44432 344555 999999999999999999999999995 333 3333332211
Q ss_pred HHhhchhhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccc
Q 007903 316 IRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLS 395 (585)
Q Consensus 316 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~ 395 (585)
..-..+|+.+|.+|+| |
T Consensus 215 ---------------------------------------------~~v~~tfG~~SkvGtG-G----------------- 231 (285)
T KOG1154|consen 215 ---------------------------------------------PQVSTTFGSKSKVGTG-G----------------- 231 (285)
T ss_pred ---------------------------------------------CCCccccCccCccCcC-c-----------------
Confidence 0113568999999999 7
Q ss_pred cccCcHHHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeeccc
Q 007903 396 RLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (585)
Q Consensus 396 ~~~~m~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~~d 446 (585)
|.+|+.||..|..+||. |.|++|..+.. +..++.+...||.|...
T Consensus 232 ----M~tKv~AA~~A~~~Gv~-viI~~g~~p~~-I~~iv~g~kvgt~f~~~ 276 (285)
T KOG1154|consen 232 ----METKVKAAVNALNAGVS-VIITNGDAPEN-ITDIVEGKKVGTFFEQL 276 (285)
T ss_pred ----chhhHHHHHHHhcCCce-EEEeCCCChHH-HHHHHhhhhhhhhhhhc
Confidence 89999999999999998 99999999987 78888888899998654
No 43
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=99.94 E-value=1.5e-25 Score=218.50 Aligned_cols=236 Identities=17% Similarity=0.206 Sum_probs=171.8
Q ss_pred EEEEeCCccCCCCC---------hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHHH
Q 007903 102 FVVIISGEIVSSPY---------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAM 172 (585)
Q Consensus 102 iVIKlGGs~l~~~~---------l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~ 172 (585)
+|+|||||+||+++ +++++.+|+. ..=.++|||||||+|.|...++++++ ...+ +.++.....+.
T Consensus 3 ~IlKlGGSvITdK~~p~t~r~~~l~ria~eI~~--~~~~~livVHGgGSFGHp~Ak~~~~~-~~~~---~~s~~G~~~~~ 76 (252)
T COG1608 3 IILKLGGSVITDKDKPRTVREDRLRRIAREISN--GKPEKLIVVHGGGSFGHPAAKEFGLE-GLKN---YLSPLGFSLTH 76 (252)
T ss_pred EEEEecceeeecCCCcchhhHHHHHHHHHHHhc--CCcccEEEEecCccccCHHHHHhCcc-cccc---ccCccchHHHH
Confidence 89999999999976 3455555553 22347899999999999999999993 2111 22334444556
Q ss_pred HHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcCCC
Q 007903 173 EAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGC 252 (585)
Q Consensus 173 ~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~G~ 252 (585)
.++-++|..+++.| .+.|+. ++...+.+ +.+ +.|++..-..+.|+.+|+.|+
T Consensus 77 ~am~~L~~~V~~~l---------~~~Gv~----av~~~P~s--~~~-------------~~gr~~~~~l~~i~~~l~~gf 128 (252)
T COG1608 77 LAMLELNSIVVDAL---------LDAGVR----AVSVVPIS--FST-------------FNGRILYTYLEAIKDALEKGF 128 (252)
T ss_pred HHHHHHHHHHHHHH---------HhcCCc----cccccCcc--eee-------------cCCceeechHHHHHHHHHcCC
Confidence 67888898888864 678876 44333332 111 235555556899999999999
Q ss_pred eEEEcC-CccCCCCceeeeChHHHHHHHHHHcCCCEEEEeeccccc-CCCCcccccc-cHHHHHHHHHhhchhhhHHHHH
Q 007903 253 LVILSN-LGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPIL-DESGHLIRFL-TLQEADSLIRQRVKQSEIAANY 329 (585)
Q Consensus 253 IPVi~~-v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl-~~~~~lI~~i-t~~e~~~li~~~~~~~~~~~~~ 329 (585)
|||+.+ +.++++..+..+++|+++.+||..|+||+++|+|||||+ +.+++.++.+ ..++++....-+
T Consensus 129 vPvl~GDVv~d~~~g~~IiSGDdIv~~LA~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~---------- 198 (252)
T COG1608 129 VPVLYGDVVPDDDNGYEIISGDDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALG---------- 198 (252)
T ss_pred EeeeecceEEcCCCceEEEeccHHHHHHHHHhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhhhc----------
Confidence 999997 456666578899999999999999999999999999998 3444433333 344554432111
Q ss_pred HhhhhcccccccCCCCCCCc-ccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccCcHHHHHHHH
Q 007903 330 VKAVAEEDITCFGHSDSIGS-VYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAA 408 (585)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~kl~aa~ 408 (585)
++.++ +| | | |..||+++.
T Consensus 199 ---------------gs~~~DVT------------------------G-G---------------------i~~Kl~~~~ 217 (252)
T COG1608 199 ---------------GSGGTDVT------------------------G-G---------------------IAKKLEALL 217 (252)
T ss_pred ---------------CcCcccch------------------------h-h---------------------HHHHHHHHH
Confidence 11112 44 5 6 899999999
Q ss_pred HHHHcCCCeEEEecCccchhhHHHHHhcCCCceeec
Q 007903 409 FVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (585)
Q Consensus 409 ~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~ 444 (585)
...+.|.. |+|+||..++. |.+++.++.+||.|.
T Consensus 218 ~~~~~~~~-vyi~ng~~~~n-i~~~l~G~~vGT~I~ 251 (252)
T COG1608 218 EIARYGKE-VYIFNGNKPEN-IYRALRGENVGTRID 251 (252)
T ss_pred HHHhcCce-EEEECCCCHHH-HHHHhcCCCCceEec
Confidence 99999988 99999999998 567778999999985
No 44
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=99.92 E-value=2.3e-24 Score=247.19 Aligned_cols=251 Identities=18% Similarity=0.164 Sum_probs=171.5
Q ss_pred CCeEEEEeCCccCCCCC-------hHHHHHHHHHHHHCCCeEEEE-eCchHHHHHHHHHcCCccc-ccCCccCCCHHHHH
Q 007903 99 GGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLV-PGTHVQIDKLLSERGHEAK-YLGRYRITDSESLA 169 (585)
Q Consensus 99 ~k~iVIKlGGs~l~~~~-------l~~l~~~Ia~L~~~G~~vVlV-hGgg~~i~~~l~~~g~~~~-~~~g~rvt~~~~l~ 169 (585)
.++||||+||++|++++ +..++++|+.|++.|+++||| ||++.+.+..+...+.... +.+-.+..+...++
T Consensus 7 ~~~iViKiGss~lt~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVsSGA~a~G~~~~~~~~~~~~~~~~~~~~~~~~~~q 86 (715)
T TIGR01092 7 VKRIVVKVGTAVVTRGDGRLALGRLGSICEQLSELNSDGREVILVTSGAVAFGRQRLRHRILVNSSFADLQKPQPELDGK 86 (715)
T ss_pred CCEEEEEeCcceeECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEccchHHhchHHhccchhccccccccCCCCchHHHH
Confidence 48999999999999864 789999999999999999995 5455444444433222110 00001122222222
Q ss_pred HHHHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHc
Q 007903 170 AAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLD 249 (585)
Q Consensus 170 ~~~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~ 249 (585)
+.++.||.. |++.|++ .|.++++. +.++-++-. ||... +......+.|+.||+
T Consensus 87 -a~aa~gq~~--L~~~y~~-----~f~~~~i~--~aQ~Llt~~----------------d~~~~-~~~~~~~~~l~~lL~ 139 (715)
T TIGR01092 87 -ACAAVGQSG--LMALYET-----MFTQLDIT--AAQILVTDL----------------DFRDE-QFRRQLNETVHELLR 139 (715)
T ss_pred -HHHHHHHHH--HHHHHHH-----HHHHcCCe--eEEEEechh----------------hcccH-HHHHHHHHHHHHHHH
Confidence 345677764 7888764 78888876 223322211 11100 011224689999999
Q ss_pred CCCeEEEcC-CccCCC------CceeeeChHHHHHHHHHHcCCCEEEEeecccccC------CCCcccccccHHHHHHHH
Q 007903 250 GGCLVILSN-LGYSSS------GEVLNCNTYEVATACALAIEADKLICIIDGPILD------ESGHLIRFLTLQEADSLI 316 (585)
Q Consensus 250 ~G~IPVi~~-v~~~~~------G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~------~~~~lI~~it~~e~~~li 316 (585)
.|+|||+++ ..+... ++-+++|+|.+|++||.+|+||+|+++|||||++ +++++|++++..+.+..+
T Consensus 140 ~g~iPVin~nD~V~~~~~~~~~~~g~~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~a~~I~~i~~~~~~~~i 219 (715)
T TIGR01092 140 MNVVPVVNENDAVSTRAAPYSDSQGIFWDNDSLAALLALELKADLLILLSDVEGLYDGPPSDDDSKLIDTFYKEKHQGEI 219 (715)
T ss_pred CCCEEEEcCCCcccccccccccccceecchHHHHHHHHHHcCCCEEEEEeCCCeeeCCCCCCCCCeEeeeecccchhhhh
Confidence 999999986 222211 1224999999999999999999999999999983 358999999865443222
Q ss_pred HhhchhhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCccccccccccccccccc
Q 007903 317 RQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSR 396 (585)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~ 396 (585)
.. +..+..++| |
T Consensus 220 ~~-------------------------------------------------~~~~~~~tG-G------------------ 231 (715)
T TIGR01092 220 TF-------------------------------------------------GTKSRLGRG-G------------------ 231 (715)
T ss_pred cc-------------------------------------------------CcccccCCC-C------------------
Confidence 11 112223456 5
Q ss_pred ccCcHHHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeecccccc
Q 007903 397 LNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYE 449 (585)
Q Consensus 397 ~~~m~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~~d~~~ 449 (585)
|.+||+||..|.+.|++ ++|++|..++. |.+++.++..||.|.++..+
T Consensus 232 ---M~~Kl~aa~~a~~~gi~-v~I~~g~~~~~-l~~~l~g~~~GT~~~~~~~~ 279 (715)
T TIGR01092 232 ---MTAKVKAAVWAAYGGTP-VIIASGTAPKN-ITKVVEGKKVGTLFHEDAHL 279 (715)
T ss_pred ---chHHHHHHHHHHHCCCe-EEEeCCCCcch-HHHHhcCCCCceEecccchh
Confidence 89999999999999998 99999999987 67888888899999877553
No 45
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=99.92 E-value=3.4e-24 Score=214.37 Aligned_cols=176 Identities=20% Similarity=0.222 Sum_probs=142.0
Q ss_pred eEEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHHHHHHhHH-
Q 007903 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGI- 178 (585)
Q Consensus 101 ~iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~~~G~i- 178 (585)
++|||+||+++.+++ ++.++++|+.+ +.|+++||||||++.++..+..+. .+++.|+.
T Consensus 1 ~iViK~GGs~l~~~~~~~~~~~~i~~l-~~g~~vvvV~Sg~~~~t~~l~~~~-------------------~~~s~Ge~~ 60 (227)
T cd04234 1 MVVQKFGGTSVASAERIKRVADIIKAY-EKGNRVVVVVSAMGGVTDLLIELA-------------------LLLSFGERL 60 (227)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHh-hcCCCEEEEEcCCCcccHHHHHHH-------------------HHHHHHHHH
Confidence 479999999998866 89999999999 889999999999887776655432 34556664
Q ss_pred HHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcC-CCeEEEc
Q 007903 179 RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDG-GCLVILS 257 (585)
Q Consensus 179 ~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~-G~IPVi~ 257 (585)
+..+... .|+++|++ +..+++.+..+... ++++.+++..++.+.|+++++. |.|||++
T Consensus 61 ~~~l~~~--------~l~~~Gi~----a~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~l~~~~~vpVv~ 119 (227)
T cd04234 61 SARLLAA--------ALRDRGIK----ARSLDARQAGITTD---------DNHGAARIIEISYERLKELLAEIGKVPVVT 119 (227)
T ss_pred HHHHHHH--------HHHHCCCC----eEEeCHHHCCEEcC---------CccchhhHHHHHHHHHHHHHhhCCCEEEec
Confidence 4444333 57899987 67777766443332 3445666777889999999999 9999999
Q ss_pred C-CccCCCCceeee---ChHHHHHHHHHHcCCCEEEEeecccccC-------CCCcccccccHHHHHHHHH
Q 007903 258 N-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIR 317 (585)
Q Consensus 258 ~-v~~~~~G~~~ni---d~D~lAa~lA~~L~AdkLIilTDV~gl~-------~~~~lI~~it~~e~~~li~ 317 (585)
+ ++.+.+|++.++ ++|.+|+.+|.+|+||+|+++|||||++ +++++|++++.+|++++..
T Consensus 120 g~i~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP~~~~~a~~i~~i~~~e~~~l~~ 190 (227)
T cd04234 120 GFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRIVPEARLIPEISYDEALELAY 190 (227)
T ss_pred CceecCCCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCccCCCCCCCCCCceEcCcCCHHHHHHHHh
Confidence 9 688888998888 7999999999999999999999999983 3589999999999988754
No 46
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=99.92 E-value=1.3e-23 Score=240.76 Aligned_cols=248 Identities=17% Similarity=0.173 Sum_probs=174.7
Q ss_pred CCeEEEEeCCccCCCCC-------hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccc---cCCc-cCCCHHH
Q 007903 99 GGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKY---LGRY-RITDSES 167 (585)
Q Consensus 99 ~k~iVIKlGGs~l~~~~-------l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~---~~g~-rvt~~~~ 167 (585)
.+++|||+||++|++++ +..++++|+.|++.|+++|||.+|...++.. .+++.... ...+ +.+....
T Consensus 15 ~~~iViK~G~ssl~~~~~~~~~~~i~~l~~~i~~l~~~g~~vvlVsSga~~~g~~--~l~~~~~~~~~~~~~~~~~~~~~ 92 (718)
T PLN02418 15 VKRVVIKVGTAVVTRDDGRLALGRLGALCEQIKELNSDGYEVILVSSGAVGVGRQ--RLRYRRLVNSSFADLQKPQMELD 92 (718)
T ss_pred CCEEEEEeCCCeecCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEecchHHHHHH--HHhhhhhhhcccccCCCCcchHH
Confidence 57999999999999864 6899999999999999999999996554433 33322210 0000 1111111
Q ss_pred HHHHHHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHH
Q 007903 168 LAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRER 247 (585)
Q Consensus 168 l~~~~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~l 247 (585)
. .+.+++||.. ++..|+. .|+++|++ ..++ -..+. ||+.. +......+.|+.|
T Consensus 93 ~-qa~aa~Gq~~--l~~~~~~-----~f~~~g~~--~~qi--llT~~--------------~~~~~-~~~~~~~~~l~~l 145 (718)
T PLN02418 93 G-KACAAVGQSE--LMALYDT-----LFSQLDVT--ASQL--LVTDS--------------DFRDP-DFRKQLSETVESL 145 (718)
T ss_pred H-HHHHHhhHHH--HHHHHHH-----HHHHcCCe--EEEE--EecHh--------------Hhcch-hHhHhHHHHHHHH
Confidence 1 2457889865 7777764 89999985 2222 22221 22111 1123346999999
Q ss_pred HcCCCeEEEcCC-ccCC-C-----CceeeeChHHHHHHHHHHcCCCEEEEeecccccC------CCCcccccccHHHHHH
Q 007903 248 LDGGCLVILSNL-GYSS-S-----GEVLNCNTYEVATACALAIEADKLICIIDGPILD------ESGHLIRFLTLQEADS 314 (585)
Q Consensus 248 L~~G~IPVi~~v-~~~~-~-----G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~------~~~~lI~~it~~e~~~ 314 (585)
|+.|.|||+++. .++. . +...++|+|.+|++||.+++||+|+|+|||||++ +++++|++++..+.+.
T Consensus 146 l~~g~iPVv~~nd~v~~~~~~~~~~~~~~~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~~~~a~~i~~i~~~~~~~ 225 (718)
T PLN02418 146 LDLRVIPIFNENDAVSTRRAPYEDSSGIFWDNDSLAALLALELKADLLILLSDVEGLYTGPPSDPSSKLIHTYIKEKHQD 225 (718)
T ss_pred HHCCCEEEEcCCCCccccccccccccCeecCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCCCCCceEcceecccchhh
Confidence 999999999973 3332 1 2336889999999999999999999999999983 3478888887654433
Q ss_pred HHHhhchhhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCccccccccccccccc
Q 007903 315 LIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERL 394 (585)
Q Consensus 315 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~ 394 (585)
.+..+ ..+..++| |
T Consensus 226 ~i~~~-------------------------------------------------~~s~~~tG-G---------------- 239 (718)
T PLN02418 226 EITFG-------------------------------------------------EKSRVGRG-G---------------- 239 (718)
T ss_pred hhhcc-------------------------------------------------cccccCCC-C----------------
Confidence 32111 11223456 6
Q ss_pred ccccCcHHHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeeccccc
Q 007903 395 SRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLY 448 (585)
Q Consensus 395 ~~~~~m~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~~d~~ 448 (585)
|.+||+||..|.+.|++ ++|++|..++. |.++++++..||+|.++..
T Consensus 240 -----M~~Kl~Aa~~a~~~Gi~-v~I~~g~~~~~-l~~~l~g~~~GT~i~~~~~ 286 (718)
T PLN02418 240 -----MTAKVKAAVNAASAGIP-VVITSGYALDN-IRKVLRGERVGTLFHQDAH 286 (718)
T ss_pred -----cHHHHHHHHHHHHCCCc-EEEeCCCCcch-HHHHhcCCCCceEeccccc
Confidence 89999999999999998 89999999987 6788888899999988765
No 47
>PRK08210 aspartate kinase I; Reviewed
Probab=99.91 E-value=1.7e-23 Score=226.23 Aligned_cols=192 Identities=16% Similarity=0.180 Sum_probs=157.2
Q ss_pred CCeEEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEe-----CchHHHHHHHHHcCCcccccCCccCCCHHHHHHHH
Q 007903 99 GGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVP-----GTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAM 172 (585)
Q Consensus 99 ~k~iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVh-----Ggg~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~ 172 (585)
++++|||+||+++++++ ...++++|+.+.+.|+++|||| ||||+++..+..+..... +.+++..++.+
T Consensus 1 m~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~g~~~vvV~sa~g~~G~~~~t~~l~~~~~~~~-----~~~~~~~~~~l- 74 (403)
T PRK08210 1 MKIIVQKFGGTSVSTEERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEEF-----SEISKREQDLL- 74 (403)
T ss_pred CCeEEEeECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCccHHHHHHHHHhc-----cCCChHHHHHH-
Confidence 36899999999999876 7899999999999999999988 677778777665443221 33566666653
Q ss_pred HHHhHHHHH--HHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcC
Q 007903 173 EAAGGIRMM--IEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDG 250 (585)
Q Consensus 173 ~~~G~i~~~--L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~ 250 (585)
.+.|+++.. +.+ .|+++|++ ++++++.|..++++.+ |+ .|++..++.+.|+.+++.
T Consensus 75 ~~~Ge~~s~~~~~~---------~l~~~Gi~----a~~l~~~~~~~~t~~~--------~~-~~~v~~~~~~~l~~~l~~ 132 (403)
T PRK08210 75 MSCGEIISSVVFSN---------MLNENGIK----AVALTGGQAGIITDDN--------FT-NAKIIEVNPDRILEALEE 132 (403)
T ss_pred HhHhHHHHHHHHHH---------HHHhCCCC----eEEechHHccEEccCC--------CC-ceeeehhhHHHHHHHHhc
Confidence 688888765 334 46889988 7899988877776542 32 367788899999999999
Q ss_pred CCeEEEcCC-ccCCCCceeee---ChHHHHHHHHHHcCCCEEEEeecccccC-------CCCcccccccHHHHHHHHHh
Q 007903 251 GCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQ 318 (585)
Q Consensus 251 G~IPVi~~v-~~~~~G~~~ni---d~D~lAa~lA~~L~AdkLIilTDV~gl~-------~~~~lI~~it~~e~~~li~~ 318 (585)
|.|||++++ +.+.+|+++++ ++|.+|+.||.+|+||+++|+|||||++ +++++|++|+.+|+++++..
T Consensus 133 ~~vpVi~G~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~ 211 (403)
T PRK08210 133 GDVVVVAGFQGVTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQ 211 (403)
T ss_pred CCEEEeeCeeecCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHHC
Confidence 999999997 78889999988 6999999999999999999999999983 36899999999999998754
No 48
>PRK00358 pyrH uridylate kinase; Provisional
Probab=99.91 E-value=1.5e-22 Score=203.07 Aligned_cols=215 Identities=19% Similarity=0.174 Sum_probs=153.7
Q ss_pred CeEEEEeCCccCCCC-----C---hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHH-cCCcccccCCccCCCHHHHHH
Q 007903 100 GTFVVIISGEIVSSP-----Y---LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSE-RGHEAKYLGRYRITDSESLAA 170 (585)
Q Consensus 100 k~iVIKlGGs~l~~~-----~---l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~-~g~~~~~~~g~rvt~~~~l~~ 170 (585)
+++|||+||++++++ + +++++++|+.+.+.|+++|||||||++++..... .++ +...++.
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~g~~vvlV~gGG~~a~~~~~~~~~~-----------~~~~~~~ 69 (231)
T PRK00358 1 KRVLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIGAAAGM-----------DRATADY 69 (231)
T ss_pred CeEEEEeccceecCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHhhcCC-----------ChhhHHH
Confidence 479999999999843 2 6899999999999999999999999887765321 222 1223444
Q ss_pred HHHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcC
Q 007903 171 AMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDG 250 (585)
Q Consensus 171 ~~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~ 250 (585)
...+..++|..++.. .|.++|++ +..++..+ ++..+. ....+.+.++|+.
T Consensus 70 ~~~~~~~l~~~ll~~--------~l~~~Gi~----a~~~~~~~----------------~~~~~~--~~~~~~~~~~l~~ 119 (231)
T PRK00358 70 MGMLATVMNALALQD--------ALERAGVD----TRVQSAIP----------------MPQVAE--PYIRRRAIRHLEK 119 (231)
T ss_pred HHHHHHHHHHHHHHH--------HHHHcCCC----eEEechhh----------------cccccC--cccHHHHHHHHHC
Confidence 434555677654443 57889987 22111111 111111 1245678899999
Q ss_pred CCeEEEcCCccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccC-------CCCcccccccHHHHHHHHHhhchhh
Q 007903 251 GCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQS 323 (585)
Q Consensus 251 G~IPVi~~v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~-------~~~~lI~~it~~e~~~li~~~~~~~ 323 (585)
|.|||+++.. |. -..++|.+|++||.+|+||+|+++|||||++ +++++|++++.+|+.++ +.
T Consensus 120 g~vPVv~g~~----~~-~~~ssD~~A~~lA~~l~A~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~---g~--- 188 (231)
T PRK00358 120 GRVVIFAAGT----GN-PFFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLEK---GL--- 188 (231)
T ss_pred CCEEEEECCC----CC-CCCCchHHHHHHHHHcCCCEEEEeeCcCceEcCCCCCCCCCEEeeEecHHHHHHc---CC---
Confidence 9999997521 22 1458999999999999999999999999983 36999999987653222 11
Q ss_pred hHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccCcHHH
Q 007903 324 EIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSE 403 (585)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~k 403 (585)
..-+
T Consensus 189 ----------------------------------------------------------------------------~~~d 192 (231)
T PRK00358 189 ----------------------------------------------------------------------------KVMD 192 (231)
T ss_pred ----------------------------------------------------------------------------cchh
Confidence 1236
Q ss_pred HHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeec
Q 007903 404 LAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (585)
Q Consensus 404 l~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~ 444 (585)
+.++..|.+.|++ ++|+||..++. |.+++.++..||.|.
T Consensus 193 ~~a~~~a~~~~i~-v~I~~g~~~~~-l~~~l~g~~~GT~i~ 231 (231)
T PRK00358 193 ATAISLARDNKIP-IIVFNMNKPGN-LKRVVKGEHIGTLVS 231 (231)
T ss_pred HHHHHHHHHcCCc-EEEECCCCchH-HHHHHCCCCCCEEeC
Confidence 7788888899997 89999999987 677788888999873
No 49
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=99.90 E-value=1.4e-22 Score=202.92 Aligned_cols=214 Identities=18% Similarity=0.167 Sum_probs=154.8
Q ss_pred eEEEEeCCccCCCCC-------hHHHHHHHHHHHHCCCeEEEEeCchHHHHH-HHHHcCCcccccCCccCCCHHHHHHHH
Q 007903 101 TFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQIDK-LLSERGHEAKYLGRYRITDSESLAAAM 172 (585)
Q Consensus 101 ~iVIKlGGs~l~~~~-------l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~-~l~~~g~~~~~~~g~rvt~~~~l~~~~ 172 (585)
++|||+||+++++++ ++.+++.|+.+.+.|+++|||||||++++. ....+++. +..++...
T Consensus 1 ~iViKiGGs~l~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvvV~ggG~~a~~~~~~~~~~~-----------~~~~~~~~ 69 (229)
T cd04239 1 RIVLKLSGEALAGEGGGIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAAARGMP-----------RATADYIG 69 (229)
T ss_pred CEEEEECcceecCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCChHHhhHHHhhcCCC-----------hhhHHHHH
Confidence 589999999998852 788999999998899999999998886443 32233322 11233322
Q ss_pred HHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcCCC
Q 007903 173 EAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGC 252 (585)
Q Consensus 173 ~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~G~ 252 (585)
.+..++|..|++. .|.++|++ +..+++.+-.. .....+.+.|..+++.|.
T Consensus 70 ~~~~~l~~~l~~~--------~l~~~Gi~----a~~~~~~~~~~------------------~~~~~~~~~l~~~l~~g~ 119 (229)
T cd04239 70 MLATVMNALALQD--------ALEKLGVK----TRVMSAIPMQG------------------VAEPYIRRRAIRHLEKGR 119 (229)
T ss_pred HHHHHHHHHHHHH--------HHHHcCCC----EEEeCHHHHhh------------------hhccccHHHHHHHHhCCC
Confidence 2333566666543 46888987 44444433100 012347888999999999
Q ss_pred eEEEcCCccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccC-------CCCcccccccHHHHHHHHHhhchhhhH
Q 007903 253 LVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSEI 325 (585)
Q Consensus 253 IPVi~~v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~-------~~~~lI~~it~~e~~~li~~~~~~~~~ 325 (585)
|||+++.. |. ...++|.+|+++|.+|+||+|+++|||||++ +++++|++++.+|+.++..
T Consensus 120 ipVi~g~~----g~-~~~~sD~~A~~lA~~l~a~~li~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~-------- 186 (229)
T cd04239 120 IVIFGGGT----GN-PGFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKKGL-------- 186 (229)
T ss_pred EEEEeCcc----CC-CCCCcHHHHHHHHHHcCCCEEEEEECCCcccCCCCCCCCCCeEEeEEcHHHHHHHhc--------
Confidence 99999764 22 2358999999999999999999999999983 2589999999877655421
Q ss_pred HHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccCcHHHHH
Q 007903 326 AANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELA 405 (585)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~kl~ 405 (585)
|..+..
T Consensus 187 --------------------------------------------------------------------------~~~~~~ 192 (229)
T cd04239 187 --------------------------------------------------------------------------KVMDAT 192 (229)
T ss_pred --------------------------------------------------------------------------CCccHH
Confidence 122455
Q ss_pred HHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeec
Q 007903 406 AAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (585)
Q Consensus 406 aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~ 444 (585)
++..+.+.|++ ++|++|..++. |.+++.++..||.|.
T Consensus 193 a~~~~~~~~i~-v~I~~g~~~~~-l~~~l~g~~~GT~i~ 229 (229)
T cd04239 193 ALTLCRRNKIP-IIVFNGLKPGN-LLRALKGEHVGTLIE 229 (229)
T ss_pred HHHHHHHCCCe-EEEECCCChhH-HHHHHcCCCCCeEeC
Confidence 67778888986 89999999988 678888888999873
No 50
>PRK06635 aspartate kinase; Reviewed
Probab=99.90 E-value=3.2e-22 Score=216.42 Aligned_cols=191 Identities=18% Similarity=0.223 Sum_probs=151.9
Q ss_pred CCeEEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeCc-hHHHHHHHHHcCCcccccCCccCCCHHHHHHHHHHHh
Q 007903 99 GGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGT-HVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAG 176 (585)
Q Consensus 99 ~k~iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhGg-g~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~~~G 176 (585)
++++|||+||+++.+++ ++.++++|+.+.+.|.++|||||| |+.++.+++....... .++++.++.+ .+.|
T Consensus 1 m~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~g~~~vvV~sg~~~~~~~l~~~~~~~~~------~~~~~~~~~~-~~~G 73 (404)
T PRK06635 1 MALIVQKFGGTSVGDVERIKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVSP------LPDPRELDML-LSTG 73 (404)
T ss_pred CCeEEEeECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcHHHHHHHHHHhcc------CCCHHHHHHH-hhhh
Confidence 36899999999999866 899999999999899999988886 6777777665432111 1255666643 3456
Q ss_pred H-HHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcCCCeEE
Q 007903 177 G-IRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVI 255 (585)
Q Consensus 177 ~-i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~G~IPV 255 (585)
+ ++..+... .|+++|++ ++++++.+..+++.. +|+ .+++..++.+.|+++++.|.|||
T Consensus 74 e~~~~~~~~~--------~l~~~g~~----a~~l~~~~~~~~~~~--------~~~-~~~~~~~~~~~l~~~l~~~~ipV 132 (404)
T PRK06635 74 EQVSVALLAM--------ALQSLGVK----ARSFTGWQAGIITDS--------AHG-KARITDIDPSRIREALDEGDVVV 132 (404)
T ss_pred HHHHHHHHHH--------HHHhCCCC----eEEeChhhCCEEecC--------CCC-ceEeeecCHHHHHHHHhCCCEEE
Confidence 4 45444332 47899987 788888876666543 233 47788889999999999999999
Q ss_pred EcC-CccCCCCceeee---ChHHHHHHHHHHcCCCEEEEeecccccC-------CCCcccccccHHHHHHHHH
Q 007903 256 LSN-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIR 317 (585)
Q Consensus 256 i~~-v~~~~~G~~~ni---d~D~lAa~lA~~L~AdkLIilTDV~gl~-------~~~~lI~~it~~e~~~li~ 317 (585)
+++ ++.+.+|+++++ ++|.+|+.+|.+|+||+|+++|||||++ +++++|++++.+|++++..
T Consensus 133 i~g~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~ 205 (404)
T PRK06635 133 VAGFQGVDEDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELAS 205 (404)
T ss_pred ecCccEeCCCCCEEecCCCChHHHHHHHHHHhCCCEEEEEEcCCCCCcCCCCCCCCceECCccCHHHHHHHHH
Confidence 999 588999999998 9999999999999999999999999983 3689999999999888853
No 51
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.90 E-value=2.9e-22 Score=203.90 Aligned_cols=212 Identities=21% Similarity=0.255 Sum_probs=151.1
Q ss_pred CeEEEEeCCccCCCCC---hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHH---HcCCcccccCCccCCCHHHHHHHHH
Q 007903 100 GTFVVIISGEIVSSPY---LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLS---ERGHEAKYLGRYRITDSESLAAAME 173 (585)
Q Consensus 100 k~iVIKlGGs~l~~~~---l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~---~~g~~~~~~~g~rvt~~~~l~~~~~ 173 (585)
..+|||||||++++++ +..++++|+.+.+ +++++||||||++.+...+ .+|++ ...++....
T Consensus 31 ~~~ViKiGGSvitdk~~~~i~~la~~i~~~~~-~~~vilV~GGG~~~r~~~~~~~~~g~~-----------~~~~~~~~~ 98 (262)
T cd04255 31 DLNVVKIGGQSIIDRGAEAVLPLVEEIVALRP-EHKLLILTGGGTRARHVYSIGLDLGMP-----------TGVLAKLGA 98 (262)
T ss_pred CcEEEEeccceecCCcHHHHHHHHHHHHHHhC-CCcEEEEECCHHHHHHHHHHHHHcCCC-----------chHHHHHHH
Confidence 4699999999999875 7899999999876 7899999999998854331 23332 122323323
Q ss_pred HHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcCCCe
Q 007903 174 AAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCL 253 (585)
Q Consensus 174 ~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~G~I 253 (585)
++..+|..++.. .|..+|++ + +...+.+.++++|+.|+|
T Consensus 99 aa~~ln~lv~~~--------~l~~~g~~----~-----------------------------i~~~~~~~l~~lL~~g~v 137 (262)
T cd04255 99 SVSEQNAEMLAT--------LLAKHGGS----K-----------------------------VGHGDLLQLPTFLKAGRA 137 (262)
T ss_pred HHHHHHHHHHHH--------HHHHcCCC----c-----------------------------cccccHHHHHHHHHCCCe
Confidence 444555555432 34566654 1 112345679999999999
Q ss_pred EEEcCCc-c------CCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccC-------CCCcccccccHHHHHHHHHhh
Q 007903 254 VILSNLG-Y------SSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQR 319 (585)
Q Consensus 254 PVi~~v~-~------~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~-------~~~~lI~~it~~e~~~li~~~ 319 (585)
||+++.. + +..|...++|+|++|+++|.+|+||+|+++|||||++ +++++|++++.+|+.++....
T Consensus 138 PVi~g~~~~~~~~i~~~~g~~~~~~~D~~Aa~lA~~l~ad~li~~TdVdGVy~~dP~~~~~a~~i~~i~~~~~~~~~~~~ 217 (262)
T cd04255 138 PVISGMPPYGLWEHPAEEGRIPPHRTDVGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAELLKKDLDD 217 (262)
T ss_pred EEEeCCcCCCeeeecCCCccCCCCCcHHHHHHHHHHhCCCEEEEEeccCeeECCCCCCCCCCeEccEeCHHHHHHHhcCC
Confidence 9999762 1 2335577999999999999999999999999999983 368999999986655442100
Q ss_pred chhhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccC
Q 007903 320 VKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNG 399 (585)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~ 399 (585)
. .+ +| |
T Consensus 218 ~---------------------------------------------------~~-~~-~--------------------- 223 (262)
T cd04255 218 L---------------------------------------------------VL-ER-P--------------------- 223 (262)
T ss_pred C---------------------------------------------------CC-cH-H---------------------
Confidence 0 00 12 3
Q ss_pred cHHHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeec
Q 007903 400 YLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (585)
Q Consensus 400 m~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~ 444 (585)
|.+|+++|. ++..++|+||+.++. |.+++.++..||+|.
T Consensus 224 ~~~~l~aa~-----~~~~v~I~~g~~~~~-L~~~l~g~~~GT~i~ 262 (262)
T cd04255 224 VLDLLQNAR-----HVKEVQIVNGLVPGN-LTRALRGEHVGTIIR 262 (262)
T ss_pred HHHHHHHhC-----CCCcEEEEeCCCCCH-HHHHHcCCCCceEeC
Confidence 788887752 223599999999987 778888888999874
No 52
>PRK08841 aspartate kinase; Validated
Probab=99.89 E-value=1.1e-21 Score=210.67 Aligned_cols=191 Identities=18% Similarity=0.284 Sum_probs=151.2
Q ss_pred CeEEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeCchHH-HHHHHHHcCCcccccCCccCCCHHHHHHHHHHHhH
Q 007903 100 GTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGG 177 (585)
Q Consensus 100 k~iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhGgg~~-i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~~~G~ 177 (585)
+++|+|+||+++.+++ ++.++++|+.+.+.|.++||||||++. .+.++. +..... +++++..++++. +.|+
T Consensus 2 ~~~V~KfGGtsv~~~~~i~~va~~I~~~~~~g~~vvvVvSa~~~~td~ll~-~~~~~~-----~~~~~~~~d~l~-s~GE 74 (392)
T PRK08841 2 PLIVQKFGGTSVGSIERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLG-LAKQVD-----SVPTARELDVLL-SAGE 74 (392)
T ss_pred CeEEEeECcccCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCchHHHHHHH-hhhhhc-----cCCCHHHHHHHH-HHHH
Confidence 5899999999998866 899999999999999999999999874 444443 332211 556777777654 4465
Q ss_pred H-HHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcCCCeEEE
Q 007903 178 I-RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVIL 256 (585)
Q Consensus 178 i-~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~G~IPVi 256 (585)
. ...|++. .|+++|++ +..+++.+..+++.. .|+ .+++..++.+.|+++++.|.|||+
T Consensus 75 ~~s~~lla~--------~L~~~Gi~----a~~l~~~~~~i~t~~--------~~~-~~~i~~~~~~~i~~ll~~~~vpVv 133 (392)
T PRK08841 75 QVSMALLAM--------TLNKLGYA----ARSLTGAQANIVTDN--------QHN-DATIKHIDTSTITELLEQDQIVIV 133 (392)
T ss_pred HHHHHHHHH--------HHHhCCCC----eEEEehhHcCEEecC--------CCC-CceechhhHHHHHHHHhCCCEEEE
Confidence 4 3334432 57889987 788888776555432 121 367777889999999999999999
Q ss_pred cCC-ccCCCCceeee---ChHHHHHHHHHHcCCCEEEEeeccccc---C----CCCcccccccHHHHHHHHHh
Q 007903 257 SNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQ 318 (585)
Q Consensus 257 ~~v-~~~~~G~~~ni---d~D~lAa~lA~~L~AdkLIilTDV~gl---~----~~~~lI~~it~~e~~~li~~ 318 (585)
++. +.+.+|++.++ ++|.+|+.+|.+|+||.|+++|||||+ | +++++|++|+.+|+.++...
T Consensus 134 ~Gf~g~~~~g~~ttlgrggsD~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP~~v~~A~~i~~is~~ea~ela~~ 206 (392)
T PRK08841 134 AGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPRVVKNARKLDVIDFPSMEAMARK 206 (392)
T ss_pred eCCcccCCCCCEEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCcCCCCCCCCceEcccccHHHHHHHHhc
Confidence 985 78889999988 999999999999999999999999998 3 46899999999998888643
No 53
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=99.89 E-value=6.5e-22 Score=198.41 Aligned_cols=215 Identities=20% Similarity=0.195 Sum_probs=152.6
Q ss_pred CeEEEEeCCccCCCCC--------hHHHHHHHHHHHHCCCeEEEEeCchHHH-HHHHHHcCCcccccCCccCCCHHHHHH
Q 007903 100 GTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGTHVQI-DKLLSERGHEAKYLGRYRITDSESLAA 170 (585)
Q Consensus 100 k~iVIKlGGs~l~~~~--------l~~l~~~Ia~L~~~G~~vVlVhGgg~~i-~~~l~~~g~~~~~~~g~rvt~~~~l~~ 170 (585)
+++||||||+++++++ +.+++++|+.+...|+++|||||||+++ +...++++ +.+.+. +.
T Consensus 1 ~~iViKlGGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGgG~~~~~~~~~~~~-------~~~~~~----d~ 69 (231)
T cd04254 1 KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASAAEAG-------MDRATA----DY 69 (231)
T ss_pred CeEEEEeCceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCCcccccchhhhcC-------CCchhh----hH
Confidence 5799999999998542 6789999999888899999999999875 11122222 223222 22
Q ss_pred HHHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcC
Q 007903 171 AMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDG 250 (585)
Q Consensus 171 ~~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~ 250 (585)
+..+..++|..++.. .|+.+|++ +..+++.+-+ ..+ ..++.+.++.+|+.
T Consensus 70 ~g~~~~~~n~~ll~~--------~L~~~Gv~----a~~l~~~~~~----------------~~~--~~~~~~~l~~~l~~ 119 (231)
T cd04254 70 MGMLATVINALALQD--------ALESLGVK----TRVMSAIPMQ----------------GVA--EPYIRRRAIRHLEK 119 (231)
T ss_pred HHHHHHHHHHHHHHH--------HHHHcCCC----eEEEcHHHhh----------------hhh--cccCHHHHHHHHHC
Confidence 222445666544332 46788987 5555544310 111 24678999999999
Q ss_pred CCeEEEcCCccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccC-------CCCcccccccHHHHHHHHHhhchhh
Q 007903 251 GCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQS 323 (585)
Q Consensus 251 G~IPVi~~v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~-------~~~~lI~~it~~e~~~li~~~~~~~ 323 (585)
|+|||+++. .|. ..+++|.+|++||.+|+||+|+++|||||++ ++++++++++.+|+.+. +.
T Consensus 120 g~ipV~~g~----~G~-~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dp~~~~~a~~i~~i~~~~~~~~---~~--- 188 (231)
T cd04254 120 GRVVIFAGG----TGN-PFFTTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLSK---GL--- 188 (231)
T ss_pred CCEEEEECC----cCC-CCCCcHHHHHHHHHHcCCCEEEEEeCCCEEEecCCCCCCCcEEeeEecHHHHHhc---ch---
Confidence 999999832 232 3558999999999999999999999999983 25889999997665221 11
Q ss_pred hHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccCcHHH
Q 007903 324 EIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSE 403 (585)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~k 403 (585)
..-+
T Consensus 189 ----------------------------------------------------------------------------~~~d 192 (231)
T cd04254 189 ----------------------------------------------------------------------------KVMD 192 (231)
T ss_pred ----------------------------------------------------------------------------hhhH
Confidence 0124
Q ss_pred HHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeec
Q 007903 404 LAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (585)
Q Consensus 404 l~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~ 444 (585)
+.++..|.+.|++ ++|++|..++. |.+++.++..||.|.
T Consensus 193 ~~a~~~a~~~gi~-~~I~~g~~~~~-l~~~l~g~~~GT~i~ 231 (231)
T cd04254 193 ATAFTLCRDNNLP-IVVFNINEPGN-LLKAVKGEGVGTLIS 231 (231)
T ss_pred HHHHHHHHHCCCe-EEEEeCCCccH-HHHHHCCCCCCEEeC
Confidence 6677778888998 89999999998 566677888999984
No 54
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=99.89 E-value=8.4e-22 Score=213.02 Aligned_cols=192 Identities=19% Similarity=0.216 Sum_probs=151.1
Q ss_pred eEEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHHHHHHhH-H
Q 007903 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGG-I 178 (585)
Q Consensus 101 ~iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~~~G~-i 178 (585)
++|+|+||+++.+++ ++.++++|+.+++.|+++||||||++.++..+.+++... . ..++++.+...++ ++|+ +
T Consensus 2 ~iViK~GGs~~~~~~~i~~~~~~i~~~~~~g~~~vvV~sg~~~~t~~l~~~~~~~-~--~~~~~~~~~~~i~--~~Ge~~ 76 (401)
T TIGR00656 2 LIVQKFGGTSVGSGERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKA-I--RDAITPRERDELV--SHGERL 76 (401)
T ss_pred cEEEEECCcCcCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChHHHHHHHHHH-h--ccCCChHHHHHHh--hHHHHH
Confidence 689999999999876 899999999999999999999999988888776554210 0 0134554443333 3465 3
Q ss_pred HHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecH-HHHHHHHcCCCeEEEc
Q 007903 179 RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDV-TRMRERLDGGCLVILS 257 (585)
Q Consensus 179 ~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~-~~I~~lL~~G~IPVi~ 257 (585)
+..+... .|+++|++ ++++++.+..+++..+ |+ .+++..++. +.|+++++.|.|||++
T Consensus 77 s~~~~~~--------~l~~~g~~----a~~l~~~~~~~~t~~~--------~~-~~~~~~~~~~~~l~~~l~~~~vpVi~ 135 (401)
T TIGR00656 77 SSALFSG--------ALRDLGVK----AIWLDGGEAGIITDDN--------FG-NAKIDIIATEERLLPLLEEGIIVVVA 135 (401)
T ss_pred HHHHHHH--------HHHhCCCc----eEEeccccceEEeCCC--------CC-ceEeeecchHHHHHHHHhCCCEEEec
Confidence 3333332 57899988 7899988877776542 22 356778888 9999999999999999
Q ss_pred C-CccCCCCceeee---ChHHHHHHHHHHcCCCEEEEeecccccC-------CCCcccccccHHHHHHHHHh
Q 007903 258 N-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQ 318 (585)
Q Consensus 258 ~-v~~~~~G~~~ni---d~D~lAa~lA~~L~AdkLIilTDV~gl~-------~~~~lI~~it~~e~~~li~~ 318 (585)
+ ++.+.+|+.+++ ++|.+|+.+|.+|+||+|+++|||||++ +++++|++++.+|+.+++..
T Consensus 136 g~~~~~~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~~l~~~ 207 (401)
T TIGR00656 136 GFQGATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDPRVVEAAKRIDKISYEEALELATF 207 (401)
T ss_pred CcceeCCCCCEeecCCCcHHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCcEECCccCHHHHHHHHHc
Confidence 9 688888998887 6999999999999999999999999983 36899999999999999754
No 55
>PRK14558 pyrH uridylate kinase; Provisional
Probab=99.89 E-value=2.4e-21 Score=194.32 Aligned_cols=216 Identities=18% Similarity=0.183 Sum_probs=149.7
Q ss_pred CeEEEEeCCccCCCCC--------hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHH
Q 007903 100 GTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA 171 (585)
Q Consensus 100 k~iVIKlGGs~l~~~~--------l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~ 171 (585)
+++|||+|||+|++++ ++.++++|+.+++.|+++|||||||.+.. .....++ + ....+.+
T Consensus 1 ~riviKlGgs~lt~~~~~~~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~~~-g~~~~~~----------~-~~~~d~i 68 (231)
T PRK14558 1 KRVLLKLSGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFR-GVELKEL----------S-PTRADQI 68 (231)
T ss_pred CeEEEEeeHHHccCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEECccHHHH-HHhccCC----------C-hHHHHHH
Confidence 5799999999998753 68899999999999999999999987633 2111111 1 1122222
Q ss_pred HHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcCC
Q 007903 172 MEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGG 251 (585)
Q Consensus 172 ~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~G 251 (585)
....-.+|..++.. .|.++|++ ++.+.. ++.. +.+...+.+.++.+|+.|
T Consensus 69 g~~~~~ln~~~~~~--------~l~~~gi~----a~~~~~----~~~~--------------~~~~~~~~~~i~~ll~~g 118 (231)
T PRK14558 69 GMLGTVINALYLKD--------IFEKSGLK----AVIVSQ----IVNL--------------PSVEPINYDDIELYFRAG 118 (231)
T ss_pred HHHHHHHHHHHHHH--------HHHHcCCC----eEEecc----cccc--------------chhhhhhHHHHHHHHHCC
Confidence 11112234332221 57889987 444332 1110 111234578999999999
Q ss_pred CeEEEcCCccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccC-------CCCcccccccHHHHHHHHHhhchhhh
Q 007903 252 CLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSE 324 (585)
Q Consensus 252 ~IPVi~~v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~-------~~~~lI~~it~~e~~~li~~~~~~~~ 324 (585)
.|||+++.. | .-++++|.+|+.+|..|+||.|+++|||||++ |++++|++++.+|+.++ +.
T Consensus 119 ~vpV~~G~~----~-~~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~---g~---- 186 (231)
T PRK14558 119 YIVIFAGGT----S-NPFFTTDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIKM---GL---- 186 (231)
T ss_pred CEEEEECCC----C-CCCCCcHHHHHHHHHHcCCCEEEEEecCCeeEccCCCCCCCCeEcccccHHHHHHc---Cc----
Confidence 999999742 1 23568999999999999999999999999983 35899999987664332 11
Q ss_pred HHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccCcHHHH
Q 007903 325 IAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSEL 404 (585)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~kl 404 (585)
. . | +.
T Consensus 187 ---------------------------------------------------~-~---------------------~--d~ 191 (231)
T PRK14558 187 ---------------------------------------------------K-V---------------------M--DT 191 (231)
T ss_pred ---------------------------------------------------c-c---------------------c--cH
Confidence 0 1 2 24
Q ss_pred HHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeeccc
Q 007903 405 AAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASD 446 (585)
Q Consensus 405 ~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~~d 446 (585)
.++..|.+.|++ ++|+||..++. |..++.++..||.|.++
T Consensus 192 ~a~~~a~~~gi~-v~I~ng~~~~~-l~~~l~g~~~GT~i~~~ 231 (231)
T PRK14558 192 EAFSICKKYGIT-ILVINFFEPGN-LLKALKGENVGTLVVPD 231 (231)
T ss_pred HHHHHHHHCCCC-EEEEeCCCCCH-HHHHHCCCCCcEEeCCC
Confidence 567777889998 89999999988 55667888899999754
No 56
>PRK07431 aspartate kinase; Provisional
Probab=99.88 E-value=4.9e-21 Score=216.49 Aligned_cols=191 Identities=19% Similarity=0.262 Sum_probs=145.4
Q ss_pred CeEEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeCc-hHHHHHHHHHcCCcccccCCccCCCHHHHHHHHHHHh-
Q 007903 100 GTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGT-HVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAG- 176 (585)
Q Consensus 100 k~iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhGg-g~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~~~G- 176 (585)
+++|+|+||+++.+++ ++.++++|+.+.+.|+++|||||+ |...+.++ +++.... + + .+...++.+. +.|
T Consensus 2 ~~iViKfGGss~~~~~~i~~~a~~I~~~~~~g~~vvvV~sa~g~~t~~l~-~~~~~~t--~--~-~~~~~~~~~l-s~Ge 74 (587)
T PRK07431 2 ALIVQKFGGTSVGSVERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELV-KLAKEIS--S--N-PPRREMDMLL-STGE 74 (587)
T ss_pred CeEEEEECchhcCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCchhHHHH-HHHHHhc--c--C-CCHHHHHHHH-HHhH
Confidence 5899999999998866 899999999999999999999996 55555543 3332100 0 1 1223333332 334
Q ss_pred HHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcCCCeEEE
Q 007903 177 GIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVIL 256 (585)
Q Consensus 177 ~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~G~IPVi 256 (585)
+++..+++. .|+++|++ ++++++.+..+++.. .++ .+++..++.+.|+++++.|.|||+
T Consensus 75 ~~s~~l~~~--------~l~~~gi~----a~~l~~~~~~~~~~~--------~~~-~~~i~~~~~~~l~~~l~~g~vpVv 133 (587)
T PRK07431 75 QVSIALLSM--------ALHELGQP----AISLTGAQVGIVTES--------EHG-RARILEIKTDRIQRHLDAGKVVVV 133 (587)
T ss_pred HHHHHHHHH--------HHHHCCCC----eEEechhHcCeEecC--------CCC-ceeeeeccHHHHHHHHhCCCeEEe
Confidence 456656653 47889988 789988887666543 233 378888899999999999999999
Q ss_pred cCC-ccC--CCCceeee---ChHHHHHHHHHHcCCCEEEEeecccccC---C----CCcccccccHHHHHHHHHh
Q 007903 257 SNL-GYS--SSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD---E----SGHLIRFLTLQEADSLIRQ 318 (585)
Q Consensus 257 ~~v-~~~--~~G~~~ni---d~D~lAa~lA~~L~AdkLIilTDV~gl~---~----~~~lI~~it~~e~~~li~~ 318 (585)
++. +.+ ..|++.++ ++|.+|+.||.+|+||+|+++|||||++ | ++++|++++.+|+.+++..
T Consensus 134 ~g~~g~~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~DP~~~~~a~~i~~i~~~e~~el~~~ 208 (587)
T PRK07431 134 AGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELASL 208 (587)
T ss_pred cCCcCCCCCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEeCCCccCcCCCCCCCCCeECCCcCHHHHHHHHhC
Confidence 975 443 44788765 8999999999999999999999999983 3 6899999999999888643
No 57
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=99.87 E-value=2.2e-20 Score=187.64 Aligned_cols=215 Identities=20% Similarity=0.169 Sum_probs=150.8
Q ss_pred CeEEEEeCCccCCCC-----C---hHHHHHHHHHHHHCCCeEEEEeCchHHHHHH-HHHcCCcccccCCccCCCHHHHHH
Q 007903 100 GTFVVIISGEIVSSP-----Y---LDPILKDIAFLHHLGIRFVLVPGTHVQIDKL-LSERGHEAKYLGRYRITDSESLAA 170 (585)
Q Consensus 100 k~iVIKlGGs~l~~~-----~---l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~-l~~~g~~~~~~~g~rvt~~~~l~~ 170 (585)
+++|||+|||+|+++ + ++++++.|+.+...|+++|||||||++.... .++++.... . ++.
T Consensus 2 ~~iViKlGGs~i~~~~~~~~~~~~i~~~a~~i~~~~~~~~~vviV~G~Gs~~~~~~a~~~~~~~~--------~---~d~ 70 (233)
T TIGR02075 2 KRVLLKLSGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGVSAKELGIDRV--------T---ADY 70 (233)
T ss_pred CEEEEEeChhhcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCCHHHHHHHHHhcCCCCc--------c---HHH
Confidence 689999999999852 1 6789999998888899999999999864332 355554321 1 122
Q ss_pred HHHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcC
Q 007903 171 AMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDG 250 (585)
Q Consensus 171 ~~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~ 250 (585)
.....-.++..++.. .|.++|++ ++.+++.+-. + .....+.+.++++|+.
T Consensus 71 ~g~~~~~l~~~l~~~--------~L~~~Gi~----a~~l~~~~~~-----~-------------~~~~~~~~~i~~ll~~ 120 (233)
T TIGR02075 71 MGMLATVINGLALRD--------ALEKLGVK----TRVLSAISMP-----Q-------------ICESYIRRKAIKHLEK 120 (233)
T ss_pred HHHHHHHHHHHHHHH--------HHHhCCCC----cEEeccccCC-----C-------------CccccCHHHHHHHHHC
Confidence 211222344444322 46888987 5666554311 0 0012346899999999
Q ss_pred CCeEEEcCCccCCCCceeeeChHHHHHHHHHHcCCCEEEEeec-ccccC-------CCCcccccccHHHHHHHHHhhchh
Q 007903 251 GCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIID-GPILD-------ESGHLIRFLTLQEADSLIRQRVKQ 322 (585)
Q Consensus 251 G~IPVi~~v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTD-V~gl~-------~~~~lI~~it~~e~~~li~~~~~~ 322 (585)
|+|||+++. .| ...+++|.+|+.||..|+||+|+++|| |||++ +++++|++++.+|+... +.
T Consensus 121 g~VpV~~g~----~g-~~~~s~D~~a~~lA~~l~a~~li~~td~VdGvy~~dp~~~~~a~~i~~i~~~e~~~~---~~-- 190 (233)
T TIGR02075 121 GKVVIFSGG----TG-NPFFTTDTAAALRAIEINADVILKGTNGVDGVYTADPKKNKDAKKYETITYNEALKK---NL-- 190 (233)
T ss_pred CCEEEEECC----CC-CCCCCchHHHHHHHHHcCCCEEEEeecccCeEEcCCCCCCCCCeECcEecHHHHHhc---CH--
Confidence 999998743 12 236789999999999999999999999 99982 35889999997764321 11
Q ss_pred hhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccCcHH
Q 007903 323 SEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLS 402 (585)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~ 402 (585)
..-
T Consensus 191 -----------------------------------------------------------------------------~~~ 193 (233)
T TIGR02075 191 -----------------------------------------------------------------------------KVM 193 (233)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 012
Q ss_pred HHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeec
Q 007903 403 ELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (585)
Q Consensus 403 kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~ 444 (585)
++.++..|.+.|++ ++|++|..++. |..++.++..||.|.
T Consensus 194 d~~~~~~a~~~~i~-v~i~~g~~~~~-l~~~l~g~~~GT~i~ 233 (233)
T TIGR02075 194 DLTAFALARDNNLP-IVVFNIDEPGA-LKKVILGKGIGTLVS 233 (233)
T ss_pred HHHHHHHHHHCCCe-EEEEeCCCcch-HHHHHCCCCCCEEeC
Confidence 45677778888997 89999999987 566677888999973
No 58
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=99.87 E-value=1.6e-20 Score=187.21 Aligned_cols=210 Identities=16% Similarity=0.144 Sum_probs=150.3
Q ss_pred eEEEEeCCccCCCC---C-hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHHHHHHh
Q 007903 101 TFVVIISGEIVSSP---Y-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAG 176 (585)
Q Consensus 101 ~iVIKlGGs~l~~~---~-l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~~~G 176 (585)
++||||||++++++ + ++++++.|+.+.+ |.++|||||||++++.+.+.... +.. +...++..-...-
T Consensus 1 ~iViKlGGs~l~~~~~~~~i~~~~~~i~~~~~-~~~iiiV~GgG~~a~~~~~~~~~-------~~~-~~~~~d~~g~~~~ 71 (221)
T cd04253 1 RIVISLGGSVLAPEKDADFIKEYANVLRKISD-GHKVAVVVGGGRLAREYISVARK-------LGA-SEAFLDEIGIMAT 71 (221)
T ss_pred CEEEEeccceeCCCCChHHHHHHHHHHHHHhC-CCEEEEEECCCHHHHHHHHHHHH-------cCC-CHHHHHHhcCHHH
Confidence 58999999999874 2 7888999988765 78999999999998876543210 001 1112333212233
Q ss_pred HHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcCCCeEEE
Q 007903 177 GIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVIL 256 (585)
Q Consensus 177 ~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~G~IPVi 256 (585)
.+|..+++.+ ..+|++ ++ .++.+.+.++|+.|.|||+
T Consensus 72 ~ln~~~~~~~---------l~~~~~----~~------------------------------~~~~~~~~~~l~~g~vpv~ 108 (221)
T cd04253 72 RLNARLLIAA---------LGDAYP----PV------------------------------PTSYEEALEAMFTGKIVVM 108 (221)
T ss_pred HHHHHHHHHH---------HhcCCC----cC------------------------------CCCHHHHHHHHHcCCeEEE
Confidence 6666666543 224432 11 1145677889999999999
Q ss_pred cCCccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccC-------CCCcccccccHHHHHHHHHhhchhhhHHHHH
Q 007903 257 SNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSEIAANY 329 (585)
Q Consensus 257 ~~v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~-------~~~~lI~~it~~e~~~li~~~~~~~~~~~~~ 329 (585)
.+... ++++|.+|+.+|.+|+||+|+++|||+|++ +++++|++++.+|++++....
T Consensus 109 ~G~~~-------~~s~D~~a~~lA~~l~a~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~~~~~---------- 171 (221)
T cd04253 109 GGTEP-------GQSTDAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIVGKS---------- 171 (221)
T ss_pred ECCCC-------CCccHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCCCCeEeeEeCHHHHHHHccCC----------
Confidence 97531 357899999999999999999999999983 358999999988877764220
Q ss_pred HhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccCcHHHHHHHHH
Q 007903 330 VKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAF 409 (585)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~kl~aa~~ 409 (585)
.+..|++ |..++.++..
T Consensus 172 ------------------------------------------~~~~g~~---------------------~~~d~~a~~~ 188 (221)
T cd04253 172 ------------------------------------------SWKAGSN---------------------EPFDPLAAKI 188 (221)
T ss_pred ------------------------------------------CcCCCCC---------------------cchHHHHHHH
Confidence 0112311 4567888999
Q ss_pred HHHcCCCeEEEecCccchhhHHHHHhcCCCceeec
Q 007903 410 VCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (585)
Q Consensus 410 a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~ 444 (585)
+.+.|++ ++|++|..++. |.+++.++..||.|.
T Consensus 189 ~~~~gi~-~~I~~g~~p~~-l~~~l~g~~~GT~I~ 221 (221)
T cd04253 189 IERSGIK-TIVVDGRDPEN-LERALKGEFVGTIIE 221 (221)
T ss_pred HHHCCCe-EEEECCCCccH-HHHHHCCCCCCeEeC
Confidence 9999997 89999999987 678888888999873
No 59
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=99.87 E-value=1.5e-20 Score=187.23 Aligned_cols=210 Identities=16% Similarity=0.148 Sum_probs=148.2
Q ss_pred EEEEeCCccCCCC---C-hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHHHHHHhH
Q 007903 102 FVVIISGEIVSSP---Y-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGG 177 (585)
Q Consensus 102 iVIKlGGs~l~~~---~-l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~~~G~ 177 (585)
+|||+||++++++ + +.+++++|+.+.+. +++|||||||.+++.+++.. ..+ .. ....++..-...-+
T Consensus 1 iViKlGGs~l~~~~~~~~i~~i~~~i~~~~~~-~~viiV~ggG~~a~~~~~~~---~~~----~~-~~~~~~~~g~~~~~ 71 (221)
T TIGR02076 1 IVISLGGSVLSPEIDAEFIKEFANILRKLSDE-HKVGVVVGGGKTARRYIGVA---REL----GA-SETFLDEIGIDATR 71 (221)
T ss_pred CEEEechhhcCCCCCHHHHHHHHHHHHHHHhC-CeEEEEECCcHHHHHHHHHH---HHc----CC-CHHHHHHhhhHHHH
Confidence 5999999999885 2 78999999998876 89999999999876543211 100 01 22233333223346
Q ss_pred HHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcCCCeEEEc
Q 007903 178 IRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILS 257 (585)
Q Consensus 178 i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~G~IPVi~ 257 (585)
+|..+++.| |...+++. + ..+.....++|+.|.|||+.
T Consensus 72 ln~~~l~~l--------l~~~~~~~----~------------------------------~~~~~~~~~~l~~g~ipv~~ 109 (221)
T TIGR02076 72 LNAMLLIAA--------LGDDAYPK----V------------------------------PENFEEALEAMSLGKIVVMG 109 (221)
T ss_pred HHHHHHHHH--------HHhcCCCC----c------------------------------CCCHHHHHHHHHcCCEEEEc
Confidence 676666543 33344431 0 01233446688889999998
Q ss_pred CCccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccC-------CCCcccccccHHHHHHHHHhhchhhhHHHHHH
Q 007903 258 NLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSEIAANYV 330 (585)
Q Consensus 258 ~v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~-------~~~~lI~~it~~e~~~li~~~~~~~~~~~~~~ 330 (585)
+.. . .+++|++|+++|.+|+||+|+++|||||++ +++++|++++.+|++++..++
T Consensus 110 G~~---~----~~s~D~~A~~lA~~l~A~~li~ltdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~----------- 171 (221)
T TIGR02076 110 GTH---P----GHTTDAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIVGSS----------- 171 (221)
T ss_pred CCC---C----CCCcHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEeeEECHHHHHHHhcCC-----------
Confidence 742 1 368999999999999999999999999983 368999999988877765321
Q ss_pred hhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccCcHHHHHHHHHH
Q 007903 331 KAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFV 410 (585)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~kl~aa~~a 410 (585)
.+++| .| |..|+.++..+
T Consensus 172 -----------------------------------------~~~~g-~~--------------------~~~~~~a~~~~ 189 (221)
T TIGR02076 172 -----------------------------------------SVKAG-SN--------------------EVVDPLAAKII 189 (221)
T ss_pred -----------------------------------------CccCC-CC--------------------ceeHHHHHHHH
Confidence 12223 11 56688888888
Q ss_pred HHcCCCeEEEecCccchhhHHHHHhcCCCceeec
Q 007903 411 CRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (585)
Q Consensus 411 ~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~ 444 (585)
.+.|++ ++|++|..++.|+ .++.++..||.|.
T Consensus 190 ~~~~i~-v~I~~g~~~~~l~-~~l~g~~~GT~i~ 221 (221)
T TIGR02076 190 ERSKIR-TIVVNGRDPENLE-KVLKGEHVGTIIE 221 (221)
T ss_pred HHCCCc-EEEECCCCccHHH-HHHCCCCCCeEeC
Confidence 888886 8999999999854 6777888899873
No 60
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=99.82 E-value=2.6e-19 Score=195.85 Aligned_cols=197 Identities=17% Similarity=0.185 Sum_probs=148.0
Q ss_pred eEEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCc-------------------
Q 007903 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRY------------------- 160 (585)
Q Consensus 101 ~iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~------------------- 160 (585)
++|+|+||+.+.+.+ +..+++.|......|+++|+|||+.+.+...|.++.....+..+.
T Consensus 2 ~~V~KFGGssv~~~~~~~~v~~~i~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 81 (441)
T TIGR00657 2 LIVQKFGGTSVGNAERIRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPGPSKEFLEKIREKHIEILERLIP 81 (441)
T ss_pred CEEEEeCcccCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhhh
Confidence 579999999999876 889999998887889999999999877877776665433222110
Q ss_pred --------cCCCHH--------HHHHHHHHHh-HHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeecc
Q 007903 161 --------RITDSE--------SLAAAMEAAG-GIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKG 223 (585)
Q Consensus 161 --------rvt~~~--------~l~~~~~~~G-~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g 223 (585)
+.++.. ..+. ..+.| +++..++.. .|+++|++ ++++++.+..+++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~d~-ils~GE~~s~~l~~~--------~l~~~Gi~----a~~l~~~~~~l~t~~--- 145 (441)
T TIGR00657 82 QAIAEELKRLLDAELVLEEKPREMDR-ILSFGERLSAALLSA--------ALEELGVK----AVSLLGGEAGILTDS--- 145 (441)
T ss_pred HHHHHHHHHHHHHHHhhhcCcchHhh-eecHHHHHHHHHHHH--------HHHhCCCC----CEEEEcCcceEEecC---
Confidence 000000 0111 12445 344444443 57899987 789999987777654
Q ss_pred ccccccCcceeeEEEecHHHHHHHHcCCCeEEEcC-CccCCCCceeee---ChHHHHHHHHHHcCCCEEEEeecccccC-
Q 007903 224 VVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSN-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD- 298 (585)
Q Consensus 224 ~~~g~d~g~~G~v~~v~~~~I~~lL~~G~IPVi~~-v~~~~~G~~~ni---d~D~lAa~lA~~L~AdkLIilTDV~gl~- 298 (585)
+|+....+..++.+.|+.+++.|.|||+++ ++.+.+|++.++ ++|.+|+.+|.+|+||+|+++|||||++
T Consensus 146 -----~~~~~~~~~~~~~~~l~~~l~~~~vpVv~G~~g~~~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~ 220 (441)
T TIGR00657 146 -----NFGRARVIIEILTERLEPLLEEGIIPVVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYT 220 (441)
T ss_pred -----CCCceeecHhhhHHHHHHHHhcCCEEEEeCcEeeCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCc
Confidence 233222456778999999999999999999 578888998887 8999999999999999999999999983
Q ss_pred --C----CCcccccccHHHHHHHHHh
Q 007903 299 --E----SGHLIRFLTLQEADSLIRQ 318 (585)
Q Consensus 299 --~----~~~lI~~it~~e~~~li~~ 318 (585)
| +++++++++.+|+.+++..
T Consensus 221 ~DP~~~~~a~~i~~is~~ea~el~~~ 246 (441)
T TIGR00657 221 TDPRIVPDARRIDEISYEEMLELASF 246 (441)
T ss_pred CCCCCCCCCeECCccCHHHHHHHHhc
Confidence 3 6899999999999888643
No 61
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.82 E-value=4.8e-19 Score=174.15 Aligned_cols=149 Identities=19% Similarity=0.198 Sum_probs=105.9
Q ss_pred EEEeCCccCCCCChHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHH---HcCCcccccCCccCCCHHHHHHHHHHHhHHH
Q 007903 103 VVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLS---ERGHEAKYLGRYRITDSESLAAAMEAAGGIR 179 (585)
Q Consensus 103 VIKlGGs~l~~~~l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~---~~g~~~~~~~g~rvt~~~~l~~~~~~~G~i~ 179 (585)
|||+|||.+.+ +..+.+.+..+. |.+++||.|||++++.+.. ++|++ ....+.+...+..+|
T Consensus 1 vvKiGGsl~~~--~~~~~~~l~~~~--~~~v~iV~GGG~~A~~~r~~~~~~g~~-----------~~~ad~mgilat~~n 65 (203)
T cd04240 1 VVKIGGSLIRE--AVRLLRWLKTLS--GGGVVIVPGGGPFADVVRRYQERKGLS-----------DAAAHWMAILAMEQY 65 (203)
T ss_pred CEEEccccccc--HHHHHHHHHhcc--CCCEEEEcCCcHHHHHHHHHHHHcCCC-----------hHHHHHHHHHHHHHH
Confidence 79999999865 566777666553 8999999999999766543 33332 223332212223334
Q ss_pred HHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcCCCeEEEcCC
Q 007903 180 MMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL 259 (585)
Q Consensus 180 ~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~G~IPVi~~v 259 (585)
-.+.+.. . + .. ..-+.+.+.+++..|.|||+.|.
T Consensus 66 a~~l~~~------------~-~-------------~~--------------------~~~~~~~~~~~~~~g~ipV~~P~ 99 (203)
T cd04240 66 GYLLADL------------E-P-------------RL--------------------VARTLAELTDVLERGKIAILLPY 99 (203)
T ss_pred HHHHhcc------------C-C-------------cc--------------------ccCCHHHHHHHHHCCCcEEEeCc
Confidence 3232211 0 0 00 01145788899999999999998
Q ss_pred cc----CCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccC-CCCcccccccHHHH
Q 007903 260 GY----SSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEA 312 (585)
Q Consensus 260 ~~----~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~-~~~~lI~~it~~e~ 312 (585)
++ +..++.+|+|+|++|+++|.+|+|++||++|||||++ .+++++++++.+|+
T Consensus 100 ~~~~~~~~~~~~~~~ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~da~~i~~i~~~e~ 157 (203)
T cd04240 100 RLLLDTDPLPHSWEVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEKDGKLVNEIAAAEL 157 (203)
T ss_pred hhhcccCCCCcccccCHHHHHHHHHHHcCCCEEEEEeCCccccCCCCcCccccCHHHh
Confidence 65 5567789999999999999999999999999999985 56999999987654
No 62
>PRK14557 pyrH uridylate kinase; Provisional
Probab=99.81 E-value=4e-18 Score=172.26 Aligned_cols=218 Identities=18% Similarity=0.212 Sum_probs=150.1
Q ss_pred CCeEEEEeCCccCCCCC--------hHHHHHHHHHHHHCCCeEEEEeCchHHH-HHHHHHcCCcccccCCccCCCHHHHH
Q 007903 99 GGTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGTHVQI-DKLLSERGHEAKYLGRYRITDSESLA 169 (585)
Q Consensus 99 ~k~iVIKlGGs~l~~~~--------l~~l~~~Ia~L~~~G~~vVlVhGgg~~i-~~~l~~~g~~~~~~~g~rvt~~~~l~ 169 (585)
.+++||||||+++.+++ ++.+++.|+.+.+.|++++||||||... +...+++++. ...++
T Consensus 4 ~~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgGn~~rg~~a~~~~~~-----------~~~~D 72 (247)
T PRK14557 4 YKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEWGID-----------RVEAD 72 (247)
T ss_pred ccEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHhcCCC-----------hHHHH
Confidence 47999999999998732 7889999999989999999999998643 3455555432 22344
Q ss_pred HHHHHHhHHHHHHHHhhCCCCCchhHHhc-CCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHH
Q 007903 170 AAMEAAGGIRMMIEAKLSPGPPICNIRRH-GDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERL 248 (585)
Q Consensus 170 ~~~~~~G~i~~~L~~~L~~~~~~~~l~~~-Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL 248 (585)
.+.....++|..+.+. .|+.. +.. ++ +++.. .|. .....+....+.+.|
T Consensus 73 ~ig~~g~~lna~ll~~--------~l~~~~~~~-----~~-------i~t~~--------~~~--~~~~~~~~~~~~~~l 122 (247)
T PRK14557 73 NIGTLGTIINSLMLRG--------VLTSKTNKE-----VR-------VMTSI--------PFN--AVAEPYIRLRAVHHL 122 (247)
T ss_pred HHHHHHHHHHHHHHHH--------HHHhhhCCc-----ee-------EEecc--------ccc--cccchhhHHHHHHHH
Confidence 4434555666655543 23332 222 11 12211 111 111233445577779
Q ss_pred cCCCeEEEcCC-ccCCCCceeeeChHHHHHHHHHHcCCCEEEEe-eccccc---C----CCCcccccccHHHHHHHHHhh
Q 007903 249 DGGCLVILSNL-GYSSSGEVLNCNTYEVATACALAIEADKLICI-IDGPIL---D----ESGHLIRFLTLQEADSLIRQR 319 (585)
Q Consensus 249 ~~G~IPVi~~v-~~~~~G~~~nid~D~lAa~lA~~L~AdkLIil-TDV~gl---~----~~~~lI~~it~~e~~~li~~~ 319 (585)
++|.|||+++. +. -.+++|++|+.+|.+++||.|+++ |||||+ | |++++|++++..|+ +..+
T Consensus 123 ~~g~VvV~~G~~g~------~~~stD~lAallA~~l~Ad~li~~ttdVdGvY~~DP~~~~~Ak~i~~i~~~e~---~~~~ 193 (247)
T PRK14557 123 DNGYIVIFGGGNGQ------PFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDV---VRQN 193 (247)
T ss_pred hCCCEEEEECCcCC------CccChHHHHHHHHHHhCCCEEEEecCCcCEeECCCCCCCCCCEEeeEEChhhh---cccC
Confidence 99999999863 32 245799999999999999999999 599998 3 36899999997654 1111
Q ss_pred chhhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccC
Q 007903 320 VKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNG 399 (585)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~ 399 (585)
. . -
T Consensus 194 ~-------------------------------------------------------~-~--------------------- 196 (247)
T PRK14557 194 I-------------------------------------------------------Q-V--------------------- 196 (247)
T ss_pred H-------------------------------------------------------H-H---------------------
Confidence 0 0 0
Q ss_pred cHHHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeecccc
Q 007903 400 YLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDL 447 (585)
Q Consensus 400 m~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~~d~ 447 (585)
|. ..|+..|.+.|++ ++|+||..++. |..++.++..||.|.+..
T Consensus 197 ~~--~~A~~~a~~~gi~-v~I~ng~~~~~-l~~~l~g~~~GT~i~~~~ 240 (247)
T PRK14557 197 MD--QAALLLARDYNLP-AHVFNFDEPGV-MRRICLGEHVGTLINDDA 240 (247)
T ss_pred HH--HHHHHHHHHCCCc-EEEEeCCCChH-HHHHHcCCCCcEEEecCc
Confidence 22 2477888899997 89999999987 667778888999998653
No 63
>PRK14556 pyrH uridylate kinase; Provisional
Probab=99.77 E-value=7e-17 Score=162.11 Aligned_cols=218 Identities=19% Similarity=0.190 Sum_probs=150.4
Q ss_pred CCeEEEEeCCccCCCCC--------hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHH
Q 007903 99 GGTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAA 170 (585)
Q Consensus 99 ~k~iVIKlGGs~l~~~~--------l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~ 170 (585)
-|++|+||+|+++..++ +..++++|+.+.+.|+++.||-|||....-...+.+ .| .+....|.
T Consensus 15 ~~rvllKlsGe~l~~~~~~~~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~Rg~~~~~~------~~---~~r~~~D~ 85 (249)
T PRK14556 15 LKRILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFG------NK---IRRATADS 85 (249)
T ss_pred hCEEEEEEehhhCcCCCCCCcCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHhCchhhcc------CC---CchhhhhH
Confidence 47899999999997542 789999999999999999999999987653222211 01 12223333
Q ss_pred HHHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcC
Q 007903 171 AMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDG 250 (585)
Q Consensus 171 ~~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~ 250 (585)
+-.++..+|..+... .|.+.|+++++ ++...- . .+ ....+.+.+.+.|+.
T Consensus 86 ~GmlaT~iNal~l~~--------~l~~~~~~~~v----~sa~~~---~----------~~-----~e~~~~~~~~~~l~~ 135 (249)
T PRK14556 86 MGMIATMINALALRD--------MLISEGVDAEV----FSAKGV---D----------GL-----LKVASAHEFNQELAK 135 (249)
T ss_pred HHHHHHHHHHHHHHH--------HHHHcCCCeEE----eecccc---C----------cC-----CCCCCHHHHHHHHhC
Confidence 333555677654432 46778887322 111110 0 00 112367788889999
Q ss_pred CCeEEEcC-CccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccC-------CCCcccccccHHHHHHHHHhhchh
Q 007903 251 GCLVILSN-LGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQ 322 (585)
Q Consensus 251 G~IPVi~~-v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~-------~~~~lI~~it~~e~~~li~~~~~~ 322 (585)
|.|||+.+ .+. -.+++|++|+.+|..++||.|+++|||||++ |+++++++++..|... .+.
T Consensus 136 g~vvi~~gg~G~------p~~StD~lAallA~~l~Ad~Lii~TdVDGVYd~DP~~~p~A~~i~~I~~~e~~~---~~l-- 204 (249)
T PRK14556 136 GRVLIFAGGTGN------PFVTTDTTASLRAVEIGADALLKATTVNGVYDKDPNKYSDAKRFDKVTFSEVVS---KEL-- 204 (249)
T ss_pred CCEEEEECCCCC------CcCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceEeeEEchhhhcc---cch--
Confidence 99999765 332 2457899999999999999999999999983 3578888887655321 100
Q ss_pred hhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccCcHH
Q 007903 323 SEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLS 402 (585)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m~~ 402 (585)
. ..
T Consensus 205 -------------------------------------------------------~----------------------vm 207 (249)
T PRK14556 205 -------------------------------------------------------N----------------------VM 207 (249)
T ss_pred -------------------------------------------------------H----------------------hH
Confidence 0 11
Q ss_pred HHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeecc
Q 007903 403 ELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (585)
Q Consensus 403 kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~~ 445 (585)
...|+..+.+.|++ ++|+|+.+++. |..++.++..||+|.-
T Consensus 208 d~~A~~~a~~~gIp-i~I~ng~~~~~-L~~~l~Ge~~GT~i~~ 248 (249)
T PRK14556 208 DLGAFTQCRDFGIP-IYVFDLTQPNA-LVDAVLDSKYGTWVTL 248 (249)
T ss_pred HHHHHHHHHHCCCc-EEEECCCCchH-HHHHHcCCCCceEEEe
Confidence 24477778899998 89999999997 5677788889999864
No 64
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=99.72 E-value=1.1e-16 Score=166.06 Aligned_cols=199 Identities=16% Similarity=0.140 Sum_probs=130.1
Q ss_pred eEEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCccc------c---c-----------CC
Q 007903 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAK------Y---L-----------GR 159 (585)
Q Consensus 101 ~iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~------~---~-----------~g 159 (585)
++|.|+||+.+.+++ +..+++-|... ..+.++|+|.++-..+...|.++..... + . ..
T Consensus 1 ~~V~KFGGtSv~~~~~~~~v~~iI~~~-~~~~~~vvVvSA~~~iTd~L~~~~~~~~~~~~~~~~~~l~~i~~~h~~~~~~ 79 (298)
T cd04244 1 RLVMKFGGTSVGSAERIRHVADLVGTY-AEGHEVVVVVSAMGGVTDRLLLAAEAAVSGRIAGVKDFIEILRLRHIKAAKE 79 (298)
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 479999999999865 67777766654 4578899999874334444433211000 0 0 00
Q ss_pred c---------------------------c---CCCHHHHHHHHHHHhHH-HHHHHHhhCCCCCchhHHhcCCCCcceeEE
Q 007903 160 Y---------------------------R---ITDSESLAAAMEAAGGI-RMMIEAKLSPGPPICNIRRHGDSSRWHEVG 208 (585)
Q Consensus 160 ~---------------------------r---vt~~~~l~~~~~~~G~i-~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~ 208 (585)
+ . -.++...+. ..+.|+. +..|++. .|+++|++ +..
T Consensus 80 l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~-i~s~GE~lSa~lla~--------~L~~~Gi~----a~~ 146 (298)
T cd04244 80 AISDEEIAEVESIIDSLLEELEKLLYGIAYLGELTPRSRDY-IVSFGERLSAPIFSA--------ALRSLGIK----ARA 146 (298)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchHhhH-hccHhHHHHHHHHHH--------HHHhCCCC----eEE
Confidence 0 0 000011111 1234443 3334443 57899988 788
Q ss_pred eeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcCCCeEEEcC-CccCCCCceeee---ChHHHHHHHHHHcC
Q 007903 209 VSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSN-LGYSSSGEVLNC---NTYEVATACALAIE 284 (585)
Q Consensus 209 l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~G~IPVi~~-v~~~~~G~~~ni---d~D~lAa~lA~~L~ 284 (585)
+++.|..+++....+ + ....++....++ ..+..+++.|.|||+++ ++.+.+|++.++ ++|.+|+.+|.+|+
T Consensus 147 l~~~~~~i~t~~~~~--~--a~~~~~~~~~i~-~~l~~ll~~~~vpVv~Gfig~~~~g~~ttlgRggsD~~A~~~A~~l~ 221 (298)
T cd04244 147 LDGGEAGIITDDNFG--N--ARPLPATYERVR-KRLLPMLEDGKIPVVTGFIGATEDGAITTLGRGGSDYSATIIGAALD 221 (298)
T ss_pred EcHHHcceeecCccc--c--cccchhHHHHHH-HHHHHHhhcCCEEEEeCccccCCCCCEEEecCCChHHHHHHHHHHcC
Confidence 888887666643211 0 000012222222 24567889999999999 588889999988 99999999999999
Q ss_pred CCEEEEeecccccC---C----CCcccccccHHHHHHHHHh
Q 007903 285 ADKLICIIDGPILD---E----SGHLIRFLTLQEADSLIRQ 318 (585)
Q Consensus 285 AdkLIilTDV~gl~---~----~~~lI~~it~~e~~~li~~ 318 (585)
||+|+++|||||++ | ++++|++++.+|+.++...
T Consensus 222 a~~l~i~tdV~Gv~~~dP~~~~~a~~i~~lsy~Ea~el~~~ 262 (298)
T cd04244 222 ADEIWIWKDVDGVMTADPRIVPEARTIPRLSYAEAMELAYF 262 (298)
T ss_pred CCEEEEEECCCCCCCCCCCCCCCCeEcCccCHHHHHHHHhC
Confidence 99999999999983 3 6899999999999998643
No 65
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.69 E-value=6.9e-17 Score=148.99 Aligned_cols=122 Identities=34% Similarity=0.649 Sum_probs=111.9
Q ss_pred cccccccccCHHHHHHHHHHHHHccccccCCHHHHHhccCeEEEEEECCeEEEEEEEeeeccCCceEEeeEEEccCCcCC
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQ 528 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~~~~~~~~~e~l~~~i~~~~Va~~dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGk 528 (585)
++||+|+.+|++.|.+|+.++..++.+.+++.+.++..+..|++++.+|+++||+.++++.+.+.+++.+++|+|+|||+
T Consensus 1 ~~iR~A~~~Di~~I~~Li~~~~~~gil~~rs~~~le~~i~dF~i~E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~ 80 (153)
T COG1246 1 EQIRKARISDIPAILELIRPLELQGILLRRSREQLEEEIDDFTIIERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGS 80 (153)
T ss_pred CceeeccccchHHHHHHHHHHhhccccchhhHHHHHHHHhhheeeeeCCcEEEEEeecccCccCeeeEEEEEECHHhcCC
Confidence 36999999999999999999999999999999999999999999999999999999997778899999999999999999
Q ss_pred cHHHHHHHHHHhhhHHHHHHcCCcccCcccee-cccccccccCeeecCc
Q 007903 529 GQGDKLLGLCIWPLLSETRYDHISTNGFPFLR-GRTHSYYRLKFNCSSK 576 (585)
Q Consensus 529 GIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~-~~a~~YYrlGF~~~~~ 576 (585)
|+|..|+++++ ..|+++|+++. | .+. ..+++|.++||+..+.
T Consensus 81 G~G~~Ll~~~~----~~Ar~~gi~~l-f-~LTt~~~~~F~~~GF~~vd~ 123 (153)
T COG1246 81 GRGERLLERLL----ADARELGIKEL-F-VLTTRSPEFFAERGFTRVDK 123 (153)
T ss_pred CcHHHHHHHHH----HHHHHcCCcee-e-eeecccHHHHHHcCCeECcc
Confidence 99999999999 99999999874 2 233 5677888999998865
No 66
>PRK06291 aspartate kinase; Provisional
Probab=99.68 E-value=1.6e-15 Score=167.05 Aligned_cols=195 Identities=16% Similarity=0.154 Sum_probs=131.8
Q ss_pred eEEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCccc-------c----------------
Q 007903 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAK-------Y---------------- 156 (585)
Q Consensus 101 ~iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~-------~---------------- 156 (585)
++|.|+||+.+.+.+ ++.+++-|......|.++|+|.++-..+...|.++..... +
T Consensus 2 ~~V~KFGGtSv~~~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (465)
T PRK06291 2 RLVMKFGGTSVGDGERIRHVAKLVKRYRSEGNEVVVVVSAMTGVTDALLEIAEQALDVRDIAKVKDFIADLRERHYKAIE 81 (465)
T ss_pred cEEEEeCcccCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 479999999999865 7777777766555788999998874334333322110000 0
Q ss_pred ---c-----------------------CCc---cCCCHHHHHHHHHHHhHH-HHHHHHhhCCCCCchhHHhcCCCCccee
Q 007903 157 ---L-----------------------GRY---RITDSESLAAAMEAAGGI-RMMIEAKLSPGPPICNIRRHGDSSRWHE 206 (585)
Q Consensus 157 ---~-----------------------~g~---rvt~~~~l~~~~~~~G~i-~~~L~~~L~~~~~~~~l~~~Gi~~~~~a 206 (585)
. .+. +-.++...+. ..+.|+. +..|+.. .|+++|++ +
T Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~-i~s~GE~~Sa~l~~~--------~L~~~Gi~----a 148 (465)
T PRK06291 82 EAIKDPDIREEVSKTIDSRIEELEKALVGVSYLGELTPRSRDY-ILSFGERLSAPILSG--------ALRDLGIK----S 148 (465)
T ss_pred HhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHH-HHhhhHHHHHHHHHH--------HHHhCCCC----e
Confidence 0 000 0001222222 2344543 4444443 57889988 7
Q ss_pred EEeeecCcceeeeeeccccccccCcceeeE--EEec-HHHHHHHHcCCCeEEEcC-CccCCCCceeee---ChHHHHHHH
Q 007903 207 VGVSVASGNFLAAKRKGVVDGVDYGATGEV--KKVD-VTRMRERLDGGCLVILSN-LGYSSSGEVLNC---NTYEVATAC 279 (585)
Q Consensus 207 v~l~~~dg~~~~a~~~g~~~g~d~g~~G~v--~~v~-~~~I~~lL~~G~IPVi~~-v~~~~~G~~~ni---d~D~lAa~l 279 (585)
..+++.|..+++... |+..+.. +.-. .+.++.+++.|.|||+++ ++.+.+|++.++ ++|.+|+.+
T Consensus 149 ~~l~~~~~~i~t~~~--------~~~~~~~~~~~~~~~~~~~~ll~~~~vpVv~Gfig~~~~g~~~tlgrggsD~~A~~~ 220 (465)
T PRK06291 149 VALTGGEAGIITDSN--------FGNARPLPKTYERVKERLEPLLKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAII 220 (465)
T ss_pred EEEchHHCcEEecCC--------CCceeechhhHHHHHHHHHHHhhcCcEEEEeCcEEcCCCCCEEEecCCChHHHHHHH
Confidence 888888876776542 2222211 0001 246888999999999999 588889999988 999999999
Q ss_pred HHHcCCCEEEEeecccccC-------CCCcccccccHHHHHHHH
Q 007903 280 ALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLI 316 (585)
Q Consensus 280 A~~L~AdkLIilTDV~gl~-------~~~~lI~~it~~e~~~li 316 (585)
|.+|+||.|+++|||||++ |++++|++++.+|+.++.
T Consensus 221 A~~l~a~~~~i~tdV~Gi~~~dP~~~~~a~~i~~l~~~ea~~l~ 264 (465)
T PRK06291 221 GAALDADEIWIWTDVDGVMTTDPRIVPEARVIPKISYIEAMELS 264 (465)
T ss_pred HHhcCCCEEEEEECCCCCCCCCCCCCCCCeEccccCHHHHHHHH
Confidence 9999999999999999983 368999999999988875
No 67
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=99.66 E-value=7.2e-15 Score=159.78 Aligned_cols=199 Identities=16% Similarity=0.145 Sum_probs=142.4
Q ss_pred CeEEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeCchH-HHHHHHHHcCCcc----------------cccCC--
Q 007903 100 GTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHV-QIDKLLSERGHEA----------------KYLGR-- 159 (585)
Q Consensus 100 k~iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhGgg~-~i~~~l~~~g~~~----------------~~~~g-- 159 (585)
+++|.|+||+.+.+.+ ++..++-|+...+.|.++|+|.+++. ..+.+++...... .....
T Consensus 2 ~~iV~KFGGTSva~~e~i~~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~~~~~~~~~~~~~el~~~~~ 81 (447)
T COG0527 2 RLIVQKFGGTSVADAERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRDAVAEQRHRDIASELILDPF 81 (447)
T ss_pred ceEEEEeCCcccCCHHHHHHHHHHHHhhhhcCCcEEEEECCCCCchHHHHHHHhhcccccchhHHHHHHHHHHHHhhcch
Confidence 3799999999999866 88889988888888999999999876 3444433332100 00000
Q ss_pred ---------------------ccCCCHHHHHHHHHHHhH-HHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCccee
Q 007903 160 ---------------------YRITDSESLAAAMEAAGG-IRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFL 217 (585)
Q Consensus 160 ---------------------~rvt~~~~l~~~~~~~G~-i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~ 217 (585)
....++..++.+ .+.|+ ++..|+++ .|+..|++ +..+++.+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i-lS~GE~~Sa~lla~--------~L~~~Gv~----A~~~~~~~~~i~ 148 (447)
T COG0527 82 IAARLAEVIAEFKKVLLGIALLGEVSPRERDEL-LSLGERLSAALLAA--------ALNALGVD----ARSLDGRQAGIA 148 (447)
T ss_pred hhhhHhhhHhhhhHHhhhhhhccCCCHHHHHHH-HhhchHHHHHHHHH--------HHHhCCCc----eEEEchHHceee
Confidence 011233444443 34555 34445554 58899988 666666554444
Q ss_pred eeeeccccccccCcceeeEEEecHHH-HHHHHcCCCeEEEcCC-ccCCCCceeee---ChHHHHHHHHHHcCCCEEEEee
Q 007903 218 AAKRKGVVDGVDYGATGEVKKVDVTR-MRERLDGGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICII 292 (585)
Q Consensus 218 ~a~~~g~~~g~d~g~~G~v~~v~~~~-I~~lL~~G~IPVi~~v-~~~~~G~~~ni---d~D~lAa~lA~~L~AdkLIilT 292 (585)
+.. .|+ ..++.....+. +..+++.|.|||++++ |.+++|++..+ .+|..|+.||.+|+||.+.+.|
T Consensus 149 t~~--------~~~-~a~i~~~~~~~~l~~~~~~~~v~Vv~GF~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~T 219 (447)
T COG0527 149 TDS--------NHG-NARILDEDSERRLLRLLEEGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWT 219 (447)
T ss_pred ecC--------ccc-ccccchhhhhhhHHHHhcCCcEEEecCceeecCCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEE
Confidence 321 222 23444455666 9999999999999995 88888987765 7899999999999999999999
Q ss_pred ccccc---C----CCCcccccccHHHHHHHHHhhc
Q 007903 293 DGPIL---D----ESGHLIRFLTLQEADSLIRQRV 320 (585)
Q Consensus 293 DV~gl---~----~~~~lI~~it~~e~~~li~~~~ 320 (585)
||||+ | |++++|+.|+.+|+.+|..-|+
T Consensus 220 DVdGI~TaDPRiVp~Ar~i~~isyeEa~ELA~~GA 254 (447)
T COG0527 220 DVDGVYTADPRIVPDARLLPEISYEEALELAYLGA 254 (447)
T ss_pred CCCCCccCCCCCCCcceEcCccCHHHHHHHHHCCc
Confidence 99998 4 4799999999999999977665
No 68
>PRK08373 aspartate kinase; Validated
Probab=99.65 E-value=1.6e-14 Score=152.08 Aligned_cols=194 Identities=18% Similarity=0.162 Sum_probs=128.6
Q ss_pred cCCeEEEEeCCccCCCCChHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCccc-------------ccCCc----
Q 007903 98 RGGTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAK-------------YLGRY---- 160 (585)
Q Consensus 98 r~k~iVIKlGGs~l~~~~l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~-------------~~~g~---- 160 (585)
.++++|+|+||+.+.+ .++.+++-|... ..|.++|+|.++-..+...|.++..... ..+.+
T Consensus 2 ~~~m~V~KFGGsSv~~-~~~~v~~ii~~~-~~~~~vvVVVSA~~gvTd~L~~l~~~~~~~~l~~i~~~h~~~~~~L~~~~ 79 (341)
T PRK08373 2 VEKMIVVKFGGSSVRY-DFEEALELVKYL-SEENEVVVVVSALKGVTDKLLKLAETFDKEALEEIEEIHEEFAKRLGIDL 79 (341)
T ss_pred CCCCEEEEECCcchHh-HHHHHHHHHHHH-hcCCCEEEEecCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccch
Confidence 4688999999999987 466766666643 3588999999985445544433211000 00000
Q ss_pred ---------------cCCCHHHHHHHHHHHhH-HHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccc
Q 007903 161 ---------------RITDSESLAAAMEAAGG-IRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGV 224 (585)
Q Consensus 161 ---------------rvt~~~~l~~~~~~~G~-i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~ 224 (585)
...++..++.+. +.|+ ++..+++. .|+++|++ +..+++.+- +.++.
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~~~~D~il-s~GE~lSa~lla~--------~L~~~Gi~----a~~l~~~~~--i~t~~--- 141 (341)
T PRK08373 80 EILSPYLKKLFNSRPDLPSEALRDYIL-SFGERLSAVLFAE--------ALENEGIK----GKVVDPWEI--LEAKG--- 141 (341)
T ss_pred hhHHHHHHHHHHHhhccCChHHHHHHH-HHHHHHHHHHHHH--------HHHHCCCc----eEEEeHHHh--eeecC---
Confidence 111233334433 4454 34445443 57899988 566655432 22211
Q ss_pred cccccCcceeeE----EEecHHHHHHHHcCCCeEEEcCCccCCCCceeee---ChHHHHHHHHHHcCCCEEEEeeccccc
Q 007903 225 VDGVDYGATGEV----KKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL 297 (585)
Q Consensus 225 ~~g~d~g~~G~v----~~v~~~~I~~lL~~G~IPVi~~v~~~~~G~~~ni---d~D~lAa~lA~~L~AdkLIilTDV~gl 297 (585)
+|+. .++ +..+.+.|..+++.|.|||+++...+.+|.+.++ ++|.+|+.||.+|+||+++++|||||+
T Consensus 142 ----~~~~-a~i~~~~s~~~~~~l~~~l~~g~VpVv~Gf~g~~~G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGV 216 (341)
T PRK08373 142 ----SFGN-AFIDIKKSKRNVKILYELLERGRVPVVPGFIGNLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGI 216 (341)
T ss_pred ----Cccc-eeechhhhhhhHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 2221 122 2356789999999999999998655777877665 899999999999999999999999998
Q ss_pred C-------CCCcccccccHHHHHHHH
Q 007903 298 D-------ESGHLIRFLTLQEADSLI 316 (585)
Q Consensus 298 ~-------~~~~lI~~it~~e~~~li 316 (585)
+ +++++|++++.+|+.++.
T Consensus 217 ytaDP~~v~~A~~i~~isy~Ea~ela 242 (341)
T PRK08373 217 YTADPKLVPSARLIPYLSYDEALIAA 242 (341)
T ss_pred CCCCCCCCCCCeEcccCCHHHHHHHH
Confidence 3 358899999999988764
No 69
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=99.62 E-value=7.7e-14 Score=136.99 Aligned_cols=217 Identities=20% Similarity=0.190 Sum_probs=152.4
Q ss_pred cCCeEEEEeCCccCCCCC--------hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHH-cCCcccccCCccCCCHHHH
Q 007903 98 RGGTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSE-RGHEAKYLGRYRITDSESL 168 (585)
Q Consensus 98 r~k~iVIKlGGs~l~~~~--------l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~-~g~~~~~~~g~rvt~~~~l 168 (585)
+.+++|+||||+++..++ ++.++++|+.+.+.|.++.||-|||......... .|++ ....
T Consensus 4 ~~~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~~g~~-----------r~~~ 72 (238)
T COG0528 4 KYMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAAGMD-----------RVTA 72 (238)
T ss_pred ceEEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHHcCCc-----------hhhh
Confidence 458999999999998732 7899999999999999999999998766544322 2332 2333
Q ss_pred HHHHHHHhHHHHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHH
Q 007903 169 AAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERL 248 (585)
Q Consensus 169 ~~~~~~~G~i~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL 248 (585)
|.+-..+..+|..+... .|.+.|+++++. +...-..+ ....+.....+.|
T Consensus 73 D~mGmlaTvmNal~L~~--------aL~~~~~~~~v~----sai~~~~~------------------~e~~~~~~A~~~l 122 (238)
T COG0528 73 DYMGMLATVMNALALQD--------ALERLGVDTRVQ----SAIAMPQV------------------AEPYSRREAIRHL 122 (238)
T ss_pred hHHHHHHHHHHHHHHHH--------HHHhcCCcceec----ccccCccc------------------cCccCHHHHHHHH
Confidence 43323555667654442 567888874332 11111000 1123556667788
Q ss_pred cCCCeEEEcCCccCCCCceeeeChHHHHHHHHHHcCCCEEEEeec-cccc-------CCCCcccccccHHHHHHHHHhhc
Q 007903 249 DGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIID-GPIL-------DESGHLIRFLTLQEADSLIRQRV 320 (585)
Q Consensus 249 ~~G~IPVi~~v~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTD-V~gl-------~~~~~lI~~it~~e~~~li~~~~ 320 (585)
+.|.|||.++= +|+++ -.+|++|+..|..++||.|+..|+ |||+ |||++.+++||.+|+.+...+
T Consensus 123 ~~grVvIf~gG----tg~P~-fTTDt~AALrA~ei~ad~ll~atn~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~l~-- 195 (238)
T COG0528 123 EKGRVVIFGGG----TGNPG-FTTDTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLK-- 195 (238)
T ss_pred HcCCEEEEeCC----CCCCC-CchHHHHHHHHHHhCCcEEEEeccCCCceeCCCCCCCCCceecccCCHHHHHHhcCe--
Confidence 99999998751 12222 367999999999999999999995 9998 257999999999886554210
Q ss_pred hhhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccCc
Q 007903 321 KQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGY 400 (585)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m 400 (585)
= |
T Consensus 196 ---------------------------------------------------------v---------------------m 197 (238)
T COG0528 196 ---------------------------------------------------------V---------------------M 197 (238)
T ss_pred ---------------------------------------------------------e---------------------e
Confidence 0 1
Q ss_pred HHHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeec
Q 007903 401 LSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 444 (585)
Q Consensus 401 ~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~ 444 (585)
-..|...+-+++.+ ++++|...++. |..++.++..||.|.
T Consensus 198 --D~tA~~l~~~~~i~-i~Vfn~~~~~~-l~~~~~ge~~gT~V~ 237 (238)
T COG0528 198 --DPTAFSLARDNGIP-IIVFNINKPGN-LKRALKGEEVGTIVE 237 (238)
T ss_pred --cHHHHHHHHHcCCc-EEEEeCCCCcc-HHHHHcCCCCceEec
Confidence 12366667788998 89999999998 677778899999985
No 70
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=99.57 E-value=1.5e-13 Score=142.52 Aligned_cols=201 Identities=19% Similarity=0.177 Sum_probs=121.9
Q ss_pred eEEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCc--c-cc--------------------
Q 007903 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHE--A-KY-------------------- 156 (585)
Q Consensus 101 ~iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~--~-~~-------------------- 156 (585)
++|.|+||+.+.+.. ++++++-|..-.+.+.++|+|-++-..+...|.++-.. . .+
T Consensus 1 ~~V~KFGGtSv~~~~~~~~v~~ii~~~~~~~~~~vVVVSA~~gvTd~L~~~~~~a~~~~~~~~l~~i~~~~~~~~~~L~~ 80 (295)
T cd04259 1 WVVLKFGGTSVSSRARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALLDEHHSLFNAIQSRHLNLAEQLEV 80 (295)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhh
Confidence 369999999999865 67777766543345777888887633333322211000 0 00
Q ss_pred ----------------cCCc---cCCCHHHHHHHHHHHhHH-HHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcce
Q 007903 157 ----------------LGRY---RITDSESLAAAMEAAGGI-RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNF 216 (585)
Q Consensus 157 ----------------~~g~---rvt~~~~l~~~~~~~G~i-~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~ 216 (585)
..+. +-.++...+.+ .+.|+. ...|++. .|++.|++ +..+.+.+ +
T Consensus 81 ~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~i-~s~GE~lSa~lla~--------~L~~~Gi~----a~~ld~~~--~ 145 (295)
T cd04259 81 DADALLANDLAQLQRWLTGISLLKQASPRTRAEV-LALGELMSTRLGAA--------YLEAQGLK----VKWLDARE--L 145 (295)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhhccCCHHHHHHH-HHHHHHHHHHHHHH--------HHHhCCCC----eEEEcHHH--h
Confidence 0000 01122223322 345553 4445444 47889987 45554433 2
Q ss_pred eeeeec-cccccccCcceeeE-EEecHHHHHHHHcC-CCeEEEcCC-ccCCCCceeee---ChHHHHHHHHHHcCCCEEE
Q 007903 217 LAAKRK-GVVDGVDYGATGEV-KKVDVTRMRERLDG-GCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLI 289 (585)
Q Consensus 217 ~~a~~~-g~~~g~d~g~~G~v-~~v~~~~I~~lL~~-G~IPVi~~v-~~~~~G~~~ni---d~D~lAa~lA~~L~AdkLI 289 (585)
+..... |. ...+|+. ..+ .....+.|.+.+.. +.|||+++. +.+.+|++..+ ++|.+|+.+|.+|+||.++
T Consensus 146 i~~~~~~~~-~~~~~~~-a~v~~~~~~~~l~~~l~~~~~v~Vv~GFig~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~ 223 (295)
T cd04259 146 LTATPTLGG-ETMNYLS-ARCESEYADALLQKRLADGAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCE 223 (295)
T ss_pred eeecccccc-ccccccc-ceehhhhhHHHHHHHHhcCCceeEeCCceeeCCCCCEEEECCCChHHHHHHHHHHcCCCEEE
Confidence 222110 00 0011111 112 12234667766665 679999985 88888987755 8999999999999999999
Q ss_pred Eeeccccc---CC----CCcccccccHHHHHHHHHh
Q 007903 290 CIIDGPIL---DE----SGHLIRFLTLQEADSLIRQ 318 (585)
Q Consensus 290 ilTDV~gl---~~----~~~lI~~it~~e~~~li~~ 318 (585)
++|||||+ || ++++|++++.+|+.++...
T Consensus 224 i~TdV~Gvyt~DP~~~~~a~~i~~ls~~ea~~l~~~ 259 (295)
T cd04259 224 IWTDVPGLFTANPHEVPHARLLKRLDYDEAQEIATM 259 (295)
T ss_pred EEECCCccccCCCCCCCCCeEeceeCHHHHHHHHHc
Confidence 99999998 33 6899999999999988643
No 71
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.
Probab=99.52 E-value=7.3e-13 Score=138.74 Aligned_cols=78 Identities=17% Similarity=0.171 Sum_probs=66.9
Q ss_pred EecHHHHHHHHcCCCeEEEcCCccCCCCceeee---ChHHHHHHHHHHcCCCEEEEeecccccC-------CCCcccccc
Q 007903 238 KVDVTRMRERLDGGCLVILSNLGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFL 307 (585)
Q Consensus 238 ~v~~~~I~~lL~~G~IPVi~~v~~~~~G~~~ni---d~D~lAa~lA~~L~AdkLIilTDV~gl~-------~~~~lI~~i 307 (585)
..+.+.+..+++.|.|||+++...+.+|...++ ++|.+|+.+|.+|+||.++++|||||++ +++++|+++
T Consensus 144 ~~~~~~l~~~l~~g~IpVv~Gf~~~~~G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~l 223 (327)
T TIGR02078 144 KRNAKILYEVLESGKIPVIPGFYGNLNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYL 223 (327)
T ss_pred HhhHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCcCCCceEcccc
Confidence 456788999999999999998654777876665 7999999999999999999999999983 357899999
Q ss_pred cHHHHHHH
Q 007903 308 TLQEADSL 315 (585)
Q Consensus 308 t~~e~~~l 315 (585)
+.+|+.++
T Consensus 224 sy~Ea~el 231 (327)
T TIGR02078 224 SYEEIKIA 231 (327)
T ss_pred CHHHHHHH
Confidence 99887655
No 72
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=99.51 E-value=5.6e-13 Score=138.22 Aligned_cols=193 Identities=15% Similarity=0.125 Sum_probs=121.6
Q ss_pred EEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccC-------------------Cc-
Q 007903 102 FVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLG-------------------RY- 160 (585)
Q Consensus 102 iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~-------------------g~- 160 (585)
.|.|+||+.+.+.+ +..+++-|.... .+.++|+|.++-..+...|.++.......+ .+
T Consensus 2 ~V~KFGGtSv~~~~~i~~v~~iI~~~~-~~~~~vvVvSA~~gvTd~L~~~~~~~~~~~~~~~~~l~~i~~~h~~~~~~l~ 80 (294)
T cd04257 2 KVLKFGGTSLANAERIRRVADIILNAA-KQEQVAVVVSAPGKVTDLLLELAELASSGDDAYEDILQELESKHLDLITELL 80 (294)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCCCcHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhh
Confidence 59999999999865 677777666443 467888888874445444433211000000 00
Q ss_pred -----------------------------cCCCHHHHHHHHHHHhHH-HHHHHHhhCCCCCchhHHhcCCCCcceeEEee
Q 007903 161 -----------------------------RITDSESLAAAMEAAGGI-RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVS 210 (585)
Q Consensus 161 -----------------------------rvt~~~~l~~~~~~~G~i-~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~ 210 (585)
+-.++...+.+ .+.|+. ...|++. .|++.|++ +..++
T Consensus 81 ~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~i-ls~GE~lSa~lla~--------~L~~~Gi~----a~~ld 147 (294)
T cd04257 81 SGDAAAELLSALGNDLEELKDLLEGIYLLGELPDSIRAKV-LSFGERLSARLLSA--------LLNQQGLD----AAWID 147 (294)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChhHhhhh-eeHHHHHHHHHHHH--------HHHhCCCC----eEEEc
Confidence 00001111111 233432 3334443 47888987 56666
Q ss_pred ecCcceeeeeeccccccccCcceeeEEE-ecHHHHHHHHcC-CCeEEEcCC-ccCCCCceeee---ChHHHHHHHHHHcC
Q 007903 211 VASGNFLAAKRKGVVDGVDYGATGEVKK-VDVTRMRERLDG-GCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIE 284 (585)
Q Consensus 211 ~~dg~~~~a~~~g~~~g~d~g~~G~v~~-v~~~~I~~lL~~-G~IPVi~~v-~~~~~G~~~ni---d~D~lAa~lA~~L~ 284 (585)
+.+ ++.+. .+|+. ..+.. ...+.|++++.. +.|||+.+. +.+.+|++..+ .+|.+|+.+|..|+
T Consensus 148 ~~~--~i~t~-------~~~~~-a~~~~~~~~~~l~~~~~~~~~v~Vv~Gfig~~~~G~~ttlGRGGSD~~A~~lA~~l~ 217 (294)
T cd04257 148 ARE--LIVTD-------GGYLN-AVVDIELSKERIKAWFSSNGKVIVVTGFIASNPQGETTTLGRNGSDYSAAILAALLD 217 (294)
T ss_pred hHH--eeEec-------CCCCc-eEechHhhHHHHHHHHhcCCCEEEecCcccCCCCCCEEECCCCchHHHHHHHHHHhC
Confidence 655 23221 12331 22221 225677777777 899999985 77778887655 68999999999999
Q ss_pred CCEEEEeeccccc---C----CCCcccccccHHHHHHHHHh
Q 007903 285 ADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQ 318 (585)
Q Consensus 285 AdkLIilTDV~gl---~----~~~~lI~~it~~e~~~li~~ 318 (585)
||.++++|||||+ | +++++|++|+.+|+.++...
T Consensus 218 a~~l~i~tdVdGvyt~DP~~~~~A~~i~~is~~ea~~l~~~ 258 (294)
T cd04257 218 ADQVEIWTDVDGVYSADPRKVKDARLLPSLSYQEAMELSYF 258 (294)
T ss_pred CCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhC
Confidence 9999999999998 3 46899999999998888543
No 73
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=99.49 E-value=1.3e-12 Score=135.54 Aligned_cols=79 Identities=20% Similarity=0.208 Sum_probs=68.3
Q ss_pred HHHHHHHHcC-CCeEEEcCC-ccCCCCceeee---ChHHHHHHHHHHcCCCEEEEeeccccc---C----CCCccccccc
Q 007903 241 VTRMRERLDG-GCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLT 308 (585)
Q Consensus 241 ~~~I~~lL~~-G~IPVi~~v-~~~~~G~~~ni---d~D~lAa~lA~~L~AdkLIilTDV~gl---~----~~~~lI~~it 308 (585)
.+.++.+++. +.|||+.+. +.+..|++.++ ++|.+|+.+|.+|+||.++++|||||+ | +++++|++++
T Consensus 168 ~~~~~~~~~~~~~v~Vv~Gfig~~~~G~~ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~ls 247 (293)
T cd04243 168 KERLAQLLAEHGKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKELS 247 (293)
T ss_pred HHHHHHHHhcCCCEEEecCccccCCCCCEEEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeceeC
Confidence 3578888887 999999985 77888998766 589999999999999999999999998 3 4689999999
Q ss_pred HHHHHHHHHhh
Q 007903 309 LQEADSLIRQR 319 (585)
Q Consensus 309 ~~e~~~li~~~ 319 (585)
.+|+.++...|
T Consensus 248 ~~ea~~l~~~G 258 (293)
T cd04243 248 YDEAMELAYFG 258 (293)
T ss_pred HHHHHHHHhCC
Confidence 99999886543
No 74
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=99.45 E-value=1.4e-11 Score=127.17 Aligned_cols=114 Identities=14% Similarity=0.178 Sum_probs=87.7
Q ss_pred hHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcCCCeEEEcCC-ccCCCCceeee--
Q 007903 194 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL-GYSSSGEVLNC-- 270 (585)
Q Consensus 194 ~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~G~IPVi~~v-~~~~~G~~~ni-- 270 (585)
.|++.|++ +..+++.+-.+++.. .|+. ..+.....+.+.++++.+.|||+++. +.+.+|++..+
T Consensus 130 ~L~~~Gi~----a~~ld~~~~~i~t~~--------~~~~-a~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~ttLgR 196 (288)
T cd04245 130 YLNYQGID----ARYVIPKDAGLVVTD--------EPGN-AQILPESYQKIKKLRDSDEKLVIPGFYGYSKNGDIKTFSR 196 (288)
T ss_pred HHHHCCCC----eEEEcHHHCceeecC--------Cccc-cccchhhHHHHHHHHhCCCEEEEeCccccCCCCCEEEcCC
Confidence 47888987 555555443333221 2221 12333367888888999999999985 88889999888
Q ss_pred -ChHHHHHHHHHHcCCCEEEEeeccccc---C----CCCcccccccHHHHHHHHHhhc
Q 007903 271 -NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQRV 320 (585)
Q Consensus 271 -d~D~lAa~lA~~L~AdkLIilTDV~gl---~----~~~~lI~~it~~e~~~li~~~~ 320 (585)
.+|..|+.+|.+|+||.+.+.|||||+ | ++++.|++|+.+|+.++...|+
T Consensus 197 ggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~ela~~Ga 254 (288)
T cd04245 197 GGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISEMTYREMRELSYAGF 254 (288)
T ss_pred CchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCccCHHHHHHHHHCCC
Confidence 999999999999999999999999998 4 5789999999999999865443
No 75
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.44 E-value=2.4e-13 Score=124.76 Aligned_cols=130 Identities=22% Similarity=0.268 Sum_probs=94.1
Q ss_pred cccccccccCHHHHHHHHHHHHHccccccCCHHHHHhcc----CeEEEEEECCeEEEEEEEeeecc----CCceEEeeEE
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVEREGQIIACAALFPFFK----EKCGEVAAIG 520 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~~~~~~~~~e~l~~~i----~~~~Va~~dg~IVG~~~l~~~~~----~~~aeI~~L~ 520 (585)
.+||+++++|++.+.+++.......+......+.+.+.+ ..+++++.++++||++.+..... ...++|..++
T Consensus 4 ~~ir~a~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~ 83 (144)
T PRK10146 4 CELRPATQYDTDAVYALICELKQAEFDHQAFRVGFNANLRDPNMRYHLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELV 83 (144)
T ss_pred cEEeeCcHhhHHHHHHHHHHHhcccCCHHHHHHHHHHHhcCCCceEEEEEECCEEEEEEEEEecccccccchhheeheeE
Confidence 579999999999999997655433332111122333332 46788899999999999864221 2246899999
Q ss_pred EccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccc--eeccccccc-ccCeeecCccccccc
Q 007903 521 VSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPF--LRGRTHSYY-RLKFNCSSKSFHISL 582 (585)
Q Consensus 521 V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~--~~~~a~~YY-rlGF~~~~~~~~~~~ 582 (585)
|+|+|||+|+|++||++++ +.|++.++....+.. .+..++.|| ++||...+..|.+++
T Consensus 84 v~p~~rg~GiG~~Ll~~~~----~~a~~~~~~~i~l~~~~~n~~a~~fY~~~Gf~~~~~~~~~~~ 144 (144)
T PRK10146 84 VMPQARGLNVGSKLLAWAE----EEARQAGAEMTELSTNVKRHDAHRFYLREGYEQSHFRFTKAL 144 (144)
T ss_pred ECHHHcCCCHHHHHHHHHH----HHHHHcCCcEEEEecCCCchHHHHHHHHcCCchhhhhheeCC
Confidence 9999999999999999999 899999987643321 223455555 799999998887653
No 76
>PRK09084 aspartate kinase III; Validated
Probab=99.40 E-value=6.7e-12 Score=137.62 Aligned_cols=192 Identities=15% Similarity=0.138 Sum_probs=121.9
Q ss_pred eEEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcC-Cccc---c-------------------
Q 007903 101 TFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERG-HEAK---Y------------------- 156 (585)
Q Consensus 101 ~iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g-~~~~---~------------------- 156 (585)
++|.|+||+.+.+.+ ++.+++-|.. .+.++|+|.++-..+...|.++- .... +
T Consensus 1 m~V~KFGGtSv~~~e~i~~v~~ii~~---~~~~~vvVVSA~~~~Td~L~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~l~ 77 (448)
T PRK09084 1 LVVAKFGGTSVADFDAMNRSADIVLS---NPNTRLVVLSASAGVTNLLVALAEGAEPGDERLALLDEIRQIQYAILDRLG 77 (448)
T ss_pred CEEEEECccCcCCHHHHHHHHHHHhc---CCCCEEEEEcCCCCchHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHhc
Confidence 479999999999865 6666665543 57888988888444444433221 1000 0
Q ss_pred -------------------cCCcc-CCCHHHHHHHHHHHhHH-HHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcc
Q 007903 157 -------------------LGRYR-ITDSESLAAAMEAAGGI-RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGN 215 (585)
Q Consensus 157 -------------------~~g~r-vt~~~~l~~~~~~~G~i-~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~ 215 (585)
..+.. ..++...+. ..+.|+. ...|++. .|+++|++ +..+++.+-
T Consensus 78 ~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~d~-i~s~GE~lSa~l~~~--------~L~~~Gi~----a~~l~~~~~- 143 (448)
T PRK09084 78 DPNVVREEIERLLENITVLAEAASLATSPALTDE-LVSHGELMSTLLFVE--------LLRERGVQ----AEWFDVRKV- 143 (448)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhcCChhhhhh-hhhHHHHHHHHHHHH--------HHHhCCCC----cEEEchHHe-
Confidence 00000 011222222 2345543 3444443 57889988 566655442
Q ss_pred eeeeeeccccccccCcceeeEE-----EecHHHHHHHHcCCCeEEEcC-CccCCCCceeee---ChHHHHHHHHHHcCCC
Q 007903 216 FLAAKRKGVVDGVDYGATGEVK-----KVDVTRMRERLDGGCLVILSN-LGYSSSGEVLNC---NTYEVATACALAIEAD 286 (585)
Q Consensus 216 ~~~a~~~g~~~g~d~g~~G~v~-----~v~~~~I~~lL~~G~IPVi~~-v~~~~~G~~~ni---d~D~lAa~lA~~L~Ad 286 (585)
+++ + .+|+. .++. ....+.+..+++.+ |||+++ ++.+.+|++..+ .+|..|+.+|..|+||
T Consensus 144 i~t-~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-v~Vv~Gf~g~~~~G~~ttLgRggSD~~a~~~a~~l~a~ 213 (448)
T PRK09084 144 MRT-D-------DRFGR-AEPDVAALAELAQEQLLPLLAEG-VVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNAS 213 (448)
T ss_pred EEe-c-------CCCCc-ccccHHHHHHHHHHHHHHhhcCC-cEEecCeeecCCCCCEeecCCCchHHHHHHHHHHcCCC
Confidence 222 1 12221 1111 11124566677888 999998 478888988766 9999999999999999
Q ss_pred EEEEeeccccc---C----CCCcccccccHHHHHHHHHhh
Q 007903 287 KLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQR 319 (585)
Q Consensus 287 kLIilTDV~gl---~----~~~~lI~~it~~e~~~li~~~ 319 (585)
.++++|||||+ | |++++|++|+.+|+.++...|
T Consensus 214 ~~~i~tdv~Gi~t~dP~~~~~a~~i~~is~~ea~ela~~G 253 (448)
T PRK09084 214 RVEIWTDVPGIYTTDPRIVPAAKRIDEISFEEAAEMATFG 253 (448)
T ss_pred EEEEEECCCccccCCCCCCCCCeEcccCCHHHHHHHHhCC
Confidence 99999999998 3 468999999999998886543
No 77
>PRK05925 aspartate kinase; Provisional
Probab=99.39 E-value=6.4e-12 Score=137.05 Aligned_cols=72 Identities=22% Similarity=0.218 Sum_probs=62.6
Q ss_pred HHcCCCeEEEcCC-ccCCCCceeee---ChHHHHHHHHHHcCCCEEEEeeccccc---C----CCCcccccccHHHHHHH
Q 007903 247 RLDGGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSL 315 (585)
Q Consensus 247 lL~~G~IPVi~~v-~~~~~G~~~ni---d~D~lAa~lA~~L~AdkLIilTDV~gl---~----~~~~lI~~it~~e~~~l 315 (585)
.++.+.|||+++. |.+++|++..+ ++|.+|+.+|.+|+||.++++|||||+ | +++++|++++.+|+.++
T Consensus 161 ~~~~~~v~Vv~GF~g~~~~G~~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea~el 240 (440)
T PRK05925 161 ALQEDAIYIMQGFIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEMQNL 240 (440)
T ss_pred hccCCcEEEecCcceeCCCCCEEEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHHHHH
Confidence 5677889999985 88889987654 999999999999999999999999998 3 46899999999998887
Q ss_pred HHh
Q 007903 316 IRQ 318 (585)
Q Consensus 316 i~~ 318 (585)
...
T Consensus 241 a~~ 243 (440)
T PRK05925 241 ASF 243 (440)
T ss_pred HhC
Confidence 543
No 78
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=99.36 E-value=7.8e-12 Score=147.35 Aligned_cols=79 Identities=15% Similarity=0.103 Sum_probs=66.5
Q ss_pred cHHHHHHHHcCC-CeEEEcCC-ccCCCCceeee---ChHHHHHHHHHHcCCCEEEEeecccccC-------CCCcccccc
Q 007903 240 DVTRMRERLDGG-CLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFL 307 (585)
Q Consensus 240 ~~~~I~~lL~~G-~IPVi~~v-~~~~~G~~~ni---d~D~lAa~lA~~L~AdkLIilTDV~gl~-------~~~~lI~~i 307 (585)
+...++.+++.+ .|||+.+. +.+.+|++..+ ++|.+|+.+|.+|+||+|+++|||||++ +++++|++|
T Consensus 178 ~~~~~~~~~~~~~~v~Vv~Gf~g~~~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~Gv~t~dP~~~~~a~~i~~l 257 (861)
T PRK08961 178 DPALRERFAAQPAQVLITQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDARLLTRL 257 (861)
T ss_pred HHHHHHHHhccCCeEEEeCCcceeCCCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCCccccCCCCCCCCceEeccc
Confidence 456777777766 49999985 88888887655 8999999999999999999999999983 367899999
Q ss_pred cHHHHHHHHHh
Q 007903 308 TLQEADSLIRQ 318 (585)
Q Consensus 308 t~~e~~~li~~ 318 (585)
+.+|+.++...
T Consensus 258 s~~e~~el~~~ 268 (861)
T PRK08961 258 DYDEAQEIATT 268 (861)
T ss_pred CHHHHHHHHHC
Confidence 99999888643
No 79
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=99.35 E-value=7.5e-11 Score=122.09 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=61.9
Q ss_pred cCCCeEEEcCC-ccCCCCceeee---ChHHHHHHHHHHcCCCEEEEeeccccc---C----CCCcccccccHHHHHHHHH
Q 007903 249 DGGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIR 317 (585)
Q Consensus 249 ~~G~IPVi~~v-~~~~~G~~~ni---d~D~lAa~lA~~L~AdkLIilTDV~gl---~----~~~~lI~~it~~e~~~li~ 317 (585)
..+.|||+++. +.+.+|++..+ ++|..|+.+|.+|+|+.++++|||+|+ | +++++|++++.+|+.++..
T Consensus 176 ~~~~v~Vv~Gf~g~~~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~isy~Ea~ela~ 255 (292)
T cd04258 176 LAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEISFAEAAEMAT 255 (292)
T ss_pred hcCCEEEECCccccCCCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEeceeCHHHHHHHHH
Confidence 45689999985 77888987754 899999999999999999999999998 3 4589999999999999875
Q ss_pred hhc
Q 007903 318 QRV 320 (585)
Q Consensus 318 ~~~ 320 (585)
.|+
T Consensus 256 ~Ga 258 (292)
T cd04258 256 FGA 258 (292)
T ss_pred CCC
Confidence 543
No 80
>PRK07757 acetyltransferase; Provisional
Probab=99.35 E-value=8.5e-12 Score=116.06 Aligned_cols=121 Identities=30% Similarity=0.499 Sum_probs=95.8
Q ss_pred cccccccccCHHHHHHHHHHHHHccccccCCHHHHHhccCeEEEEEECCeEEEEEEEeeeccCCceEEeeEEEccCCcCC
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQ 528 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~~~~~~~~~e~l~~~i~~~~Va~~dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGk 528 (585)
+.||+++++|++.+.+++..........+.+.+.+...+..++++..+++++|++.+.. .++..++|..++|+|+|||+
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~lvG~~~l~~-~~~~~~~i~~v~V~p~~rg~ 80 (152)
T PRK07757 2 MEIRKARLSDVKAIHALINVYAKKGLMLPRSLDELYENIRDFYVAEEEGEIVGCCALHI-LWEDLAEIRSLAVSEDYRGQ 80 (152)
T ss_pred ceEeeCCcccHHHHHHHHHHHHhcCCccCCCHHHHHhccCcEEEEEECCEEEEEEEEEe-ccCCceEEEEEEECHHHcCC
Confidence 46899999999999999876655555555667777777777888899999999999874 44567899999999999999
Q ss_pred cHHHHHHHHHHhhhHHHHHHcCCcccCccceecccccccccCeeecCc
Q 007903 529 GQGDKLLGLCIWPLLSETRYDHISTNGFPFLRGRTHSYYRLKFNCSSK 576 (585)
Q Consensus 529 GIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~~~a~~YYrlGF~~~~~ 576 (585)
|+|++|++.++ +.+++.++..... .......|.|+||+..+.
T Consensus 81 Glg~~Ll~~l~----~~a~~~g~~~i~~--~~~~~~~Y~k~GF~~~~~ 122 (152)
T PRK07757 81 GIGRMLVEACL----EEARELGVKRVFA--LTYQPEFFEKLGFREVDK 122 (152)
T ss_pred CHHHHHHHHHH----HHHHhCCCCeEEE--EeCcHHHHHHCCCEEccc
Confidence 99999999999 8888888765321 112334555899998855
No 81
>PTZ00330 acetyltransferase; Provisional
Probab=99.34 E-value=4e-12 Score=117.08 Aligned_cols=129 Identities=19% Similarity=0.257 Sum_probs=88.5
Q ss_pred cccccccccCHHHHHHHHHHHHHccccccCCHHHHHhcc------CeEEEEEECCeEEEEEEEeeec-----cCCceEEe
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL------DSFYVVEREGQIIACAALFPFF-----KEKCGEVA 517 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~~~~~~~~~e~l~~~i------~~~~Va~~dg~IVG~~~l~~~~-----~~~~aeI~ 517 (585)
++||+++++|++.+.+++..............+.+.... ..+++++.+|++||++.+.... ....++|.
T Consensus 7 ~~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~ 86 (147)
T PTZ00330 7 LELRDLEEGDLGSVLELLSHLTSAPALSQEELEQIAARRRLAGVVTRVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIE 86 (147)
T ss_pred EEEEEcccccHHHHHHHHHHhcCCCccchhHHHHHHHHHhcCCCceEEEEEeCCCEEEEEEEEEeccccccCCCceEEEE
Confidence 579999999999999997654322211111111222111 2356666789999999886321 11247899
Q ss_pred eEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccceecccccccccCeeecCcccccc
Q 007903 518 AIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRGRTHSYYRLKFNCSSKSFHIS 581 (585)
Q Consensus 518 ~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~~~a~~YYrlGF~~~~~~~~~~ 581 (585)
.++|+|+|||+|+|++|+++++ +++++.++....+.........|.++||+..+.++..+
T Consensus 87 ~~~V~~~~rg~Gig~~l~~~~~----~~a~~~~~~~l~l~~n~~a~~~y~k~GF~~~~~~~~~~ 146 (147)
T PTZ00330 87 DVVVDPSYRGQGLGRALISDLC----EIARSSGCYKVILDCTEDMVAFYKKLGFRACERQMRLD 146 (147)
T ss_pred EEEECHHHcCCCHHHHHHHHHH----HHHHHCCCCEEEEecChHHHHHHHHCCCEEeceEEEEe
Confidence 9999999999999999999999 88888887665443322333345579999988877654
No 82
>PRK09034 aspartate kinase; Reviewed
Probab=99.33 E-value=1.1e-10 Score=128.35 Aligned_cols=127 Identities=14% Similarity=0.156 Sum_probs=92.0
Q ss_pred HHHhHH-HHHHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcCC
Q 007903 173 EAAGGI-RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGG 251 (585)
Q Consensus 173 ~~~G~i-~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~G 251 (585)
.+.|+. +..|++. .|++.|++ +..+++.+-.+++. .+|+. ..+.....+.+..++..+
T Consensus 116 ~s~GE~~S~~l~a~--------~L~~~g~~----a~~~~~~~~~~~t~--------~~~~~-a~i~~~~~~~~~~~~~~~ 174 (454)
T PRK09034 116 KARGEDLNAKLIAA--------YLNYEGIP----ARYVDPKEAGIIVT--------DEPGN-AQVLPESYDNLKKLRDRD 174 (454)
T ss_pred HHHHHHHHHHHHHH--------HHHhCCCC----cEEEchHHceEEec--------CCcCc-eeEcHhhHHHHHHHHhcC
Confidence 345543 4445554 47888987 45555444333322 12332 223334567788777888
Q ss_pred CeEEEcCC-ccCCCCceeee---ChHHHHHHHHHHcCCCEEEEeeccccc---C----CCCcccccccHHHHHHHHHhhc
Q 007903 252 CLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQRV 320 (585)
Q Consensus 252 ~IPVi~~v-~~~~~G~~~ni---d~D~lAa~lA~~L~AdkLIilTDV~gl---~----~~~~lI~~it~~e~~~li~~~~ 320 (585)
.|||+++. |.+.+|++..+ .+|..|+.+|.+|+||.+.+.|||||+ | |+++.+++|+.+|+.+|...|+
T Consensus 175 ~v~Vv~GFig~~~~g~~ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~ela~~Ga 254 (454)
T PRK09034 175 EKLVIPGFFGVTKDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKEITYREMRELSYAGF 254 (454)
T ss_pred CEEEecCccccCCCCCEEecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCccCHHHHHHHHhCCc
Confidence 89999985 88888987765 889999999999999999999999998 4 5789999999999999975544
No 83
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.30 E-value=1.7e-11 Score=117.20 Aligned_cols=121 Identities=23% Similarity=0.389 Sum_probs=91.0
Q ss_pred cccccccccCHHHHHHHHHHHHHccccccCCHHHHHhccCeEEEEE-ECCeEEEEEEEeeeccCCceEEeeEEEccCCcC
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVE-REGQIIACAALFPFFKEKCGEVAAIGVSPECRG 527 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~~~~~~~~~e~l~~~i~~~~Va~-~dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRG 527 (585)
+.||+++++|.+.+.+++................+......+++++ .+++++|++.+... ....++|..++|+|+|||
T Consensus 6 i~iR~a~~~D~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~iiG~~~~~~~-~~~~~~i~~l~V~p~~rg 84 (169)
T PRK07922 6 ITVRRARTSDVPAIKRLVDPYAQGRILLEKNLVTLYEAVQEFWVAEHLDGEVVGCGALHVM-WEDLAEIRTVAVDPAARG 84 (169)
T ss_pred ceeecCCHhhHHHHHHHHHHHhhcCccccchHHHHHhhcCcEEEEEecCCcEEEEEEEeec-CCCceEEEEEEECHHHhC
Confidence 5899999999999999987655443332333333444456678888 89999999988743 345789999999999999
Q ss_pred CcHHHHHHHHHHhhhHHHHHHcCCcccCccceecccccccccCeeecCc
Q 007903 528 QGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRGRTHSYYRLKFNCSSK 576 (585)
Q Consensus 528 kGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~~~a~~YYrlGF~~~~~ 576 (585)
+|+|++||++++ ++|++.|+...-.. ......|.|+||+..+.
T Consensus 85 kGiG~~Ll~~~~----~~a~~~g~~~l~~~--~~~~~fY~k~GF~~~~~ 127 (169)
T PRK07922 85 RGVGHAIVERLL----DVARELGLSRVFVL--TFEVEFFARHGFVEIDG 127 (169)
T ss_pred CCHHHHHHHHHH----HHHHHcCCCEEEEE--eccHHHHHHCCCEECcc
Confidence 999999999999 99999998864221 12234455799998754
No 84
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=99.28 E-value=9.4e-11 Score=121.99 Aligned_cols=71 Identities=21% Similarity=0.247 Sum_probs=61.5
Q ss_pred CCCeEEEcCC-ccCCCCceeee---ChHHHHHHHHHHcCCCEEEEeeccccc---C----CCCcccccccHHHHHHHHHh
Q 007903 250 GGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQ 318 (585)
Q Consensus 250 ~G~IPVi~~v-~~~~~G~~~ni---d~D~lAa~lA~~L~AdkLIilTDV~gl---~----~~~~lI~~it~~e~~~li~~ 318 (585)
.+.|||+++. +.+.+|++..+ .+|..|+.+|..|+|+.++++|||+|+ | +++++|++|+.+|+.++...
T Consensus 189 ~~~v~Vv~GFig~~~~G~~ttLGRgGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~ 268 (306)
T cd04247 189 ENRVPVVTGFFGNVPGGLLSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSITPEEAAELTYY 268 (306)
T ss_pred CCceEEeeccEecCCCCCeEEeCCCchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecccCHHHHHHHHhC
Confidence 5789999985 77788887766 889999999999999999999999998 3 45899999999999998755
Q ss_pred hc
Q 007903 319 RV 320 (585)
Q Consensus 319 ~~ 320 (585)
|+
T Consensus 269 Ga 270 (306)
T cd04247 269 GS 270 (306)
T ss_pred cC
Confidence 44
No 85
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=99.28 E-value=8.5e-11 Score=137.50 Aligned_cols=76 Identities=20% Similarity=0.233 Sum_probs=64.2
Q ss_pred HHHHHHH-cCCCeEEEcCC-ccCCCCceeeeC---hHHHHHHHHHHcCCCEEEEeeccccc---C----CCCcccccccH
Q 007903 242 TRMRERL-DGGCLVILSNL-GYSSSGEVLNCN---TYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTL 309 (585)
Q Consensus 242 ~~I~~lL-~~G~IPVi~~v-~~~~~G~~~nid---~D~lAa~lA~~L~AdkLIilTDV~gl---~----~~~~lI~~it~ 309 (585)
+.|++++ +.+.|||+++. +.+.+|++..+. +|.+|+.+|..|+||.++++|||||+ | +++++|++++.
T Consensus 172 ~~i~~~~~~~~~v~Vv~Gfig~~~~G~~ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~isy 251 (819)
T PRK09436 172 RRIAASFIPADHVILMPGFTAGNEKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSLSY 251 (819)
T ss_pred HHHHHHHhcCCcEEEecCcccCCCCCCEEEeCCCCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEecH
Confidence 4566554 56899999985 777889887774 89999999999999999999999998 3 46899999999
Q ss_pred HHHHHHHH
Q 007903 310 QEADSLIR 317 (585)
Q Consensus 310 ~e~~~li~ 317 (585)
+|+.++..
T Consensus 252 ~ea~el~~ 259 (819)
T PRK09436 252 QEAMELSY 259 (819)
T ss_pred HHHHHHHh
Confidence 99888753
No 86
>PLN02551 aspartokinase
Probab=99.25 E-value=3e-10 Score=126.23 Aligned_cols=197 Identities=17% Similarity=0.152 Sum_probs=122.3
Q ss_pred CeEEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeCch-HHHHHHHHHc------CCccc-c--------------
Q 007903 100 GTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTH-VQIDKLLSER------GHEAK-Y-------------- 156 (585)
Q Consensus 100 k~iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhGgg-~~i~~~l~~~------g~~~~-~-------------- 156 (585)
.++|.|+||+.+.+.+ ++.+++-|..- ...++|+|.++- ...+.+++.. +.+.. +
T Consensus 52 ~~~V~KFGGtSv~~~e~i~~v~~iI~~~--~~~~~vVVvSA~~~~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~ 129 (521)
T PLN02551 52 LTVVMKFGGSSVASAERMREVADLILSF--PDERPVVVLSAMGKTTNNLLLAGEKAVSCGVTNVSEIEELSAIRELHLRT 129 (521)
T ss_pred ceEEEEECCCccCCHHHHHHHHHHHHhc--CCCCEEEEEcCCCCchHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHH
Confidence 4679999999999865 67777666542 234577888763 2333332210 00000 0
Q ss_pred ---------------------cCCcc---CCCHHHHHHHHHHHhHH-HHHHHHhhCCCCCchhHHhcCCCCcceeEEeee
Q 007903 157 ---------------------LGRYR---ITDSESLAAAMEAAGGI-RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSV 211 (585)
Q Consensus 157 ---------------------~~g~r---vt~~~~l~~~~~~~G~i-~~~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~ 211 (585)
..|.. -.++...+.+ .+.|+. ...|++. .|++.|++ +..+++
T Consensus 130 ~~~L~~~~~~~~~~~~~l~~ll~~i~~~~~~~~~~~d~i-ls~GE~lSa~lla~--------~L~~~Gi~----a~~lda 196 (521)
T PLN02551 130 ADELGVDESVVEKLLDELEQLLKGIAMMKELTPRTRDYL-VSFGERMSTRIFAA--------YLNKIGVK----ARQYDA 196 (521)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHhhhhhcccchHHHHHH-HhHHHHHHHHHHHH--------HHHHCCCC----cEEech
Confidence 00100 0122222222 344543 4445554 47888987 555555
Q ss_pred cCcceeeeeeccccccccCcceeeEEEecHHHHHHHH-----cCCCeEEEcCC-ccC-CCCceeee---ChHHHHHHHHH
Q 007903 212 ASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERL-----DGGCLVILSNL-GYS-SSGEVLNC---NTYEVATACAL 281 (585)
Q Consensus 212 ~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL-----~~G~IPVi~~v-~~~-~~G~~~ni---d~D~lAa~lA~ 281 (585)
.+-.+++. .+|+. ..+.......|.+.+ +.+.|||+++. |.+ .+|++..+ .+|..|+.||.
T Consensus 197 ~~~gi~t~--------~~~~~-a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~GFig~~~~~G~~ttLGRGGSD~sA~~la~ 267 (521)
T PLN02551 197 FDIGFITT--------DDFTN-ADILEATYPAVAKRLHGDWIDDPAVPVVTGFLGKGWKTGAITTLGRGGSDLTATTIGK 267 (521)
T ss_pred HHcceEec--------CCCCc-cchhhhhHHHHHHHHHhhhccCCeEEEEcCccccCCCCCcEEecCCChHHHHHHHHHH
Confidence 54333332 12331 222233344454444 45689999985 888 78998766 78999999999
Q ss_pred HcCCCEEEEeeccccc---C----CCCcccccccHHHHHHHHHhhc
Q 007903 282 AIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQRV 320 (585)
Q Consensus 282 ~L~AdkLIilTDV~gl---~----~~~~lI~~it~~e~~~li~~~~ 320 (585)
+|+|+.+.+.|||||+ | +++++|++|+.+|+.+|..-|+
T Consensus 268 ~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~~Ga 313 (521)
T PLN02551 268 ALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELAYFGA 313 (521)
T ss_pred HcCCCEEEEEeCCCceeCCCCCCCCCceEecccCHHHHHHHHhCCC
Confidence 9999999999999998 4 4689999999999999976555
No 87
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.24 E-value=2.9e-11 Score=112.19 Aligned_cols=127 Identities=20% Similarity=0.260 Sum_probs=90.2
Q ss_pred cccccccccCHH-HHHHHHHHHHHccccccCCHHHHHhcc---------CeEEEEEE--CCeEEEEEEEeeec-----cC
Q 007903 449 EGTRTAKVTDLS-GIKQIIQPLVESGALVRRTDEELLKAL---------DSFYVVER--EGQIIACAALFPFF-----KE 511 (585)
Q Consensus 449 ~~IR~at~~D~~-~I~~Li~~~~~~~~~~~~~~e~l~~~i---------~~~~Va~~--dg~IVG~~~l~~~~-----~~ 511 (585)
..||+++++|.+ .+.+++.... ...+++.+.+...+ ..+++++. ++++||++.+.+.. ..
T Consensus 7 ~~ir~~~~~D~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~ 83 (150)
T PLN02706 7 FKVRRLEISDKSKGFLELLQQLT---VVGDVTEEEFEARFQELASLGDDHLICVIEDAASGRIIATGSVFVERKFIRNCG 83 (150)
T ss_pred eEEeEhhhcccchHHHHHHHhcc---CCCCCCHHHHHHHHHHHHhCCCcEEEEEEEeCCCCcEEEEEEEEEEeecccCCC
Confidence 469999999998 5888765432 12244544443332 23455655 68999999874211 12
Q ss_pred CceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccceecccccccccCeeecCccccccc
Q 007903 512 KCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRGRTHSYYRLKFNCSSKSFHISL 582 (585)
Q Consensus 512 ~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~~~a~~YYrlGF~~~~~~~~~~~ 582 (585)
..++|..++|+|+|||+|||++|+++++ ++|+++|+....+.........|.|+||...+.+|..++
T Consensus 84 ~~~~i~~i~V~~~~rg~GiG~~ll~~~~----~~a~~~g~~~i~l~~~~~N~~~y~k~GF~~~g~~~~~~~ 150 (150)
T PLN02706 84 KVGHIEDVVVDSAARGKGLGKKIIEALT----EHARSAGCYKVILDCSEENKAFYEKCGYVRKEIQMVKYF 150 (150)
T ss_pred cEEEEEEEEECHHHcCCCHHHHHHHHHH----HHHHHcCCCEEEEEeccccHHHHHHCcCEEehhheEecC
Confidence 4567888999999999999999999999 999999998865544344444555899999998887653
No 88
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.24 E-value=3e-11 Score=108.69 Aligned_cols=117 Identities=22% Similarity=0.342 Sum_probs=79.9
Q ss_pred ccccccccCHHHHHHHHHHHHHccccccCCHHHHHhcc--CeEEEEEECCeEEEEEEEeeec------cCCceEEeeEEE
Q 007903 450 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL--DSFYVVEREGQIIACAALFPFF------KEKCGEVAAIGV 521 (585)
Q Consensus 450 ~IR~at~~D~~~I~~Li~~~~~~~~~~~~~~e~l~~~i--~~~~Va~~dg~IVG~~~l~~~~------~~~~aeI~~L~V 521 (585)
+||+++++|.+++.+|++..........+......... ..++++++++++||++.+.+.. .-+.+.|..++|
T Consensus 1 ~iR~~~~~d~~~i~~l~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~v 80 (127)
T PF13527_consen 1 EIRPLTESDFEQIIELFNEAFGDSESPPEIWEYFRNLYGPGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVAV 80 (127)
T ss_dssp -EEEE-GGGHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHTTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred CceECCHHHHHHHHHHHHHHCCCCCCchhhhhhhhcccCcCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEEE
Confidence 48999999999999996554332222110011112222 6889999999999999987541 124688999999
Q ss_pred ccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccceeccccccc-ccCeee
Q 007903 522 SPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRGRTHSYY-RLKFNC 573 (585)
Q Consensus 522 ~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~~~a~~YY-rlGF~~ 573 (585)
+|+|||+|+|++||++++ +.+++.++.-. ++.+....|| ++||+.
T Consensus 81 ~p~~R~~Gl~~~L~~~~~----~~~~~~g~~~~---~l~~~~~~~Y~~~G~~~ 126 (127)
T PF13527_consen 81 DPEYRGRGLGRQLMRALL----ERARERGVPFI---FLFPSSPPFYRRFGFEY 126 (127)
T ss_dssp -GGGTTSSHHHHHHHHHH----HHHHHTT-SEE---EEE-SSHHHHHHTTEEE
T ss_pred CHHHcCCCHHHHHHHHHH----HHHHhCCCCEE---EEecCChhhhhcCCCEE
Confidence 999999999999999999 88888887642 3333334555 799985
No 89
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.20 E-value=6.9e-11 Score=134.65 Aligned_cols=122 Identities=26% Similarity=0.457 Sum_probs=97.1
Q ss_pred cccccccccCHHHHHHHHHHHHHccccccCCHHHHHhccCeEEEEEECCeEEEEEEEeeeccCCceEEeeEEEccCCcCC
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQ 528 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~~~~~~~~~e~l~~~i~~~~Va~~dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGk 528 (585)
++||+++++|++.+.+++..+.......++..+.+......++|++.++++|||+.+.. .+...++|..|+|+|+|||+
T Consensus 464 m~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~~~l~~~~~~~~Va~~~g~IVG~~~l~~-~~~~~~~I~~i~V~P~~rGk 542 (614)
T PRK12308 464 VKVRPARLTDIDAIEGMVAYWAGLGENLPRSRNELVRDIGSFAVAEHHGEVTGCASLYI-YDSGLAEIRSLGVEAGWQVQ 542 (614)
T ss_pred CEEEECCHHHHHHHHHHHHHHHhhhcccccCHHHHhcccCcEEEEEECCEEEEEEEEEE-cCCCeEEEEEEEECHHHcCC
Confidence 57999999999999999876554444456666667666678899999999999999874 33456899999999999999
Q ss_pred cHHHHHHHHHHhhhHHHHHHcCCcccCccceeccccccc-ccCeeecCccc
Q 007903 529 GQGDKLLGLCIWPLLSETRYDHISTNGFPFLRGRTHSYY-RLKFNCSSKSF 578 (585)
Q Consensus 529 GIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~~~a~~YY-rlGF~~~~~~~ 578 (585)
|||++||++++ +++++.|++...+ ....+.|| ++||+..+..+
T Consensus 543 GIGk~Ll~~l~----~~ak~~g~~~i~l---~~~a~~FYek~GF~~~~~~~ 586 (614)
T PRK12308 543 GQGSALVQYLV----EKARQMAIKKVFV---LTRVPEFFMKQGFSPTSKSL 586 (614)
T ss_pred CHHHHHHHHHH----HHHHHCCCCEEEE---eeCcHHHHHHCCCEECCccc
Confidence 99999999999 9999999876432 22334455 79999887654
No 90
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.17 E-value=1.9e-10 Score=117.93 Aligned_cols=123 Identities=21% Similarity=0.209 Sum_probs=89.1
Q ss_pred cccccccccCHHHHHHHHHHHHHccccccC-CHHHHHhcc---CeEEEEEECCeEEEEEEEeeeccCCceEEeeEEEccC
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRR-TDEELLKAL---DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPE 524 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~~~~~~~-~~e~l~~~i---~~~~Va~~dg~IVG~~~l~~~~~~~~aeI~~L~V~Pe 524 (585)
..||+++++|++++.+|+...... +..++ ..+.+...+ ..+++++.++++||++.+........++|..++|+|+
T Consensus 116 ~~IR~a~~~D~~~l~~L~~~v~~~-~~~~~~~~~~l~~~~~~~~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~ 194 (266)
T TIGR03827 116 FTLRIATEDDADAMAALYRKVFPT-YPFPIHDPAYLLETMKSNVVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPE 194 (266)
T ss_pred eEEEECCHHHHHHHHHHHHHHhcc-CCCCccCHHHHHHHhcCCcEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHH
Confidence 579999999999999997765432 22222 223333333 4577888999999999875434456789999999999
Q ss_pred CcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccce--e-cccccccccCeeecCc
Q 007903 525 CRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFL--R-GRTHSYYRLKFNCSSK 576 (585)
Q Consensus 525 yRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~--~-~~a~~YYrlGF~~~~~ 576 (585)
|||+|+|++||++++ +++++.|+...-.... . +....|+++||...+.
T Consensus 195 yRG~GiG~~Ll~~l~----~~a~~~g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~ 245 (266)
T TIGR03827 195 YRGKGLAKILLAAME----KEMKEKGIRTAYTIARASSYGMNITFARLGYAYGGT 245 (266)
T ss_pred HcCCCHHHHHHHHHH----HHHHHCCCcEEEeehhhcchhHHHHHHHcCCccccE
Confidence 999999999999999 8999999876422111 1 1223477899997643
No 91
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.15 E-value=1.8e-10 Score=101.73 Aligned_cols=104 Identities=27% Similarity=0.363 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHHHHccccc---------cCCHHHHHhcc----CeEEEEEECCeEEEEEEEeeeccCCceEEeeEEEccC
Q 007903 458 DLSGIKQIIQPLVESGALV---------RRTDEELLKAL----DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPE 524 (585)
Q Consensus 458 D~~~I~~Li~~~~~~~~~~---------~~~~e~l~~~i----~~~~Va~~dg~IVG~~~l~~~~~~~~aeI~~L~V~Pe 524 (585)
|+++|.+|+.......... +.+.+.+...+ ..++|++.++++|||+.+. +..+|..++|+|+
T Consensus 1 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ivG~~~~~-----~~~~i~~l~v~p~ 75 (117)
T PF13673_consen 1 DIPAIAELYREAWQENYWDYGPEQIDAWRYSPEDLEEYLEEGSHTIFVAEEGGEIVGFAWLE-----PDGEISHLYVLPE 75 (117)
T ss_dssp GHHHHHHHHHHHHHHHTTTTSHHHHHHHHSSHHHHHHHHCTCCCEEEEEEETTEEEEEEEEE-----TCEEEEEEEE-GG
T ss_pred CHHHHHHHHHHHHHHhccCCCHHHHHHHhcCHHHHHHHHHhcCCEEEEEEECCEEEEEEEEc-----CCCeEEEEEEChh
Confidence 7888989887765543211 13344444444 4799999999999999876 2455999999999
Q ss_pred CcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccceecccccccccCe
Q 007903 525 CRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRGRTHSYYRLKF 571 (585)
Q Consensus 525 yRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~~~a~~YYrlGF 571 (585)
|||+|+|++|+++++ ++++. ++....+.........|.+.||
T Consensus 76 ~r~~Gig~~Ll~~~~----~~~~~-~~~~l~~~~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 76 YRGRGIGRALLDAAE----KEAKD-GIRRLTVEANERARRFYRKLGF 117 (117)
T ss_dssp GTTSSHHHHHHHHHH----HHHTT-TCEEEEEEC-HHHHHHHHHTT-
T ss_pred hcCCcHHHHHHHHHH----HHHHc-CCcEEEEEeCHHHHHHHHhCCC
Confidence 999999999999999 88766 7776544422223334557998
No 92
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=99.12 E-value=2.8e-09 Score=100.38 Aligned_cols=114 Identities=14% Similarity=0.206 Sum_probs=84.4
Q ss_pred HcCCCeEEEcCC----ccCCCCceeeeChHHHHHHHHHHcCCCEEEEeecccccC---CCCcccccccHHHHHHHHHhhc
Q 007903 248 LDGGCLVILSNL----GYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD---ESGHLIRFLTLQEADSLIRQRV 320 (585)
Q Consensus 248 L~~G~IPVi~~v----~~~~~G~~~nid~D~lAa~lA~~L~AdkLIilTDV~gl~---~~~~lI~~it~~e~~~li~~~~ 320 (585)
...+.+||+-|- ..|+--..+-+.+|.+|.++|.+++|.++|+.|||||++ ++++++++|+..|++. +.
T Consensus 90 i~~~~~aVLLPyrlLr~~DplpHSW~VTSDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~~~kLv~eI~A~dl~~----~~ 165 (212)
T COG2054 90 IKPDAKAVLLPYRLLRKTDPLPHSWEVTSDSISVWIAAKAGATEVVKATDVDGIYEEDPKGKLVREIRASDLKT----GE 165 (212)
T ss_pred cCcccceEeeehHhhhcCCCCCcceeecccHHHHHHHHHcCCcEEEEEecCCcccccCCcchhhhhhhHhhccc----Cc
Confidence 345667777652 234444678899999999999999999999999999984 5678999998776533 10
Q ss_pred hhhhHHHHHHhhhhcccccccCCCCCCCcccccCCCCccccchhccccCCccccCCCCCcccccccccccccccccccCc
Q 007903 321 KQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGY 400 (585)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~g~~~~~~~~a~~~~~~~~~~~~m 400 (585)
+..| + +
T Consensus 166 ------------------t~vD-----------------------------------~---------------------~ 171 (212)
T COG2054 166 ------------------TSVD-----------------------------------P---------------------Y 171 (212)
T ss_pred ------------------cccc-----------------------------------c---------------------h
Confidence 0001 2 5
Q ss_pred HHHHHHHHHHHHcCCCeEEEecCccchhhHHHHHhcCCCceeecc
Q 007903 401 LSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 445 (585)
Q Consensus 401 ~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~~~GT~i~~ 445 (585)
.|+| +.+.+.+ ..++||..|..+++.+...+-+||.|..
T Consensus 172 ~P~L-----l~k~~m~-~~Vvng~~pervi~~lrGk~~v~T~Ivg 210 (212)
T COG2054 172 LPKL-----LVKYKMN-CRVVNGKEPERVILALRGKEVVGTLIVG 210 (212)
T ss_pred hhHH-----HHHcCCc-eEEECCCCHHHHHHHHhccccceEEEeC
Confidence 6765 3677887 7999999999988877555668999864
No 93
>PRK09831 putative acyltransferase; Provisional
Probab=99.11 E-value=3.4e-10 Score=105.13 Aligned_cols=113 Identities=15% Similarity=0.099 Sum_probs=79.1
Q ss_pred cccccccccCHHHHHHHHHHHHHccccccCCHH-----------HHHhcc--CeEEEEEECCeEEEEEEEeeeccCCceE
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDE-----------ELLKAL--DSFYVVEREGQIIACAALFPFFKEKCGE 515 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~~~~~~~~~e-----------~l~~~i--~~~~Va~~dg~IVG~~~l~~~~~~~~ae 515 (585)
++||+++++|++.+.+++............+.+ .+...+ ..++++..+|+++|++.+.. .+
T Consensus 1 ~~ir~a~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~iiG~~~~~~------~~ 74 (147)
T PRK09831 1 IQIRNYQPGDFQQLCAIFIRAVTMTASQHYSPQQIAAWAQIDESRWKEKLAKSQVRVAVINAQPVGFITCIE------HY 74 (147)
T ss_pred CccccCChhhHHHHHHHHHHHHHHhhhhcCCHHHHHhccCCCHHHHHHHHhcCceEEEEECCEEEEEEEehh------ce
Confidence 368999999999999998765443222122222 122222 46788899999999988752 46
Q ss_pred EeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccceecccccccccCeeecCc
Q 007903 516 VAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRGRTHSYYRLKFNCSSK 576 (585)
Q Consensus 516 I~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~~~a~~YYrlGF~~~~~ 576 (585)
+..++|+|+|||+|+|++||++++ +.+....+.. .......|.++||+..+.
T Consensus 75 i~~~~v~p~~~g~GiG~~Ll~~~~----~~~~~l~v~~-----~~~a~~~Y~k~Gf~~~g~ 126 (147)
T PRK09831 75 IDMLFVDPEYTRRGVASALLKPLI----KSESELTVDA-----SITAKPFFERYGFQTVKQ 126 (147)
T ss_pred eeeEEECHHHcCCCHHHHHHHHHH----HHhhheEeec-----chhhHHHHHHCCCEEeec
Confidence 788999999999999999999999 6666533321 112334455799998755
No 94
>PHA00673 acetyltransferase domain containing protein
Probab=99.10 E-value=6.3e-10 Score=104.21 Aligned_cols=126 Identities=19% Similarity=0.148 Sum_probs=88.6
Q ss_pred ccccccCHHHHHHHHHHHHHcc----ccccCC----HHHHHhcc-CeEEEEEECCeEEEEEEEeeec-----cCCceEEe
Q 007903 452 RTAKVTDLSGIKQIIQPLVESG----ALVRRT----DEELLKAL-DSFYVVEREGQIIACAALFPFF-----KEKCGEVA 517 (585)
Q Consensus 452 R~at~~D~~~I~~Li~~~~~~~----~~~~~~----~e~l~~~i-~~~~Va~~dg~IVG~~~l~~~~-----~~~~aeI~ 517 (585)
--|+.+|+++|.+|+.+..... ...+.. .+.+...- ..++|++++|++|||+.+...+ ....+.|.
T Consensus 10 ~~A~~~D~paI~~LLadd~l~~~r~d~~~~~~y~~af~ai~~dp~~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie 89 (154)
T PHA00673 10 AFAELADAPTFASLCAEYAHESANADLAGRAPDHHAYAGMEAAGVAHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTE 89 (154)
T ss_pred hhccHhhHHHHHHHHHhcccccccccccccchhHHHHHHHHhCCCcEEEEEEECCEEEEEEEEEEecCCccCCccEEEEE
Confidence 3488999999999975521110 011111 11222222 6788999999999999886433 12567899
Q ss_pred eEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCccc---Cccceeccccccc-ccCeeecCcccccccc
Q 007903 518 AIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTN---GFPFLRGRTHSYY-RLKFNCSSKSFHISLH 583 (585)
Q Consensus 518 ~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~---g~~~~~~~a~~YY-rlGF~~~~~~~~~~~~ 583 (585)
.++|+|++||+|||++||++++ ++|++.|+... ..+. .++-.|| +.|+......|+--+|
T Consensus 90 ~l~V~~~~RGqGIG~~Ll~~A~----~~Ar~~Gc~~lyis~~p~--~~tv~fy~~~g~~~~~~~~~~~~~ 153 (154)
T PHA00673 90 SIFVAAAHRPGGAGMALLRATE----ALARDLGATGLYVSGPTE--GRLVQLLPAAGYRETNRTFYRGLH 153 (154)
T ss_pred EEEEChhccCCCHHHHHHHHHH----HHHHHCCCCEEEEecCCC--ccchHHHHhCCchhhchhhhhhcc
Confidence 9999999999999999999999 99999999863 2222 2344455 7999988887776554
No 95
>PRK03624 putative acetyltransferase; Provisional
Probab=99.09 E-value=3.9e-10 Score=101.91 Aligned_cols=118 Identities=15% Similarity=0.159 Sum_probs=83.5
Q ss_pred cccccccccCHHHHHHHHHHHHHccccccCCH--HHHHhcc----CeEEEEEECCeEEEEEEEeeeccCCceEEeeEEEc
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTD--EELLKAL----DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVS 522 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~~~~~~~~~--e~l~~~i----~~~~Va~~dg~IVG~~~l~~~~~~~~aeI~~L~V~ 522 (585)
..||+++++|++.+.+++... ....+|.. ..+...+ ..++++..++++||++.+.. ......+..++|+
T Consensus 3 ~~ir~~~~~d~~~i~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~--~~~~~~i~~i~v~ 77 (140)
T PRK03624 3 MEIRVFRQADFEAVIALWERC---DLTRPWNDPEMDIERKLNHDPSLFLVAEVGGEVVGTVMGGY--DGHRGWAYYLAVH 77 (140)
T ss_pred eEEEEcccccHHHHHHHHHhc---CCCcchhhHHHHHHHHhcCCCceEEEEEcCCcEEEEEEeec--cCCCceEEEEEEC
Confidence 468999999999999996554 22222221 1122222 45778888999999998762 2345678889999
Q ss_pred cCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCcccee--c-ccccccccCeeecC
Q 007903 523 PECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLR--G-RTHSYYRLKFNCSS 575 (585)
Q Consensus 523 PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~--~-~a~~YYrlGF~~~~ 575 (585)
|+|||+|+|++|+++++ +.+++.++......... . ....|.++||...+
T Consensus 78 p~~rg~Gig~~ll~~~~----~~~~~~~~~~~~~~~~~~N~~~~~~y~k~GF~~~~ 129 (140)
T PRK03624 78 PDFRGRGIGRALVARLE----KKLIARGCPKINLQVREDNDAVLGFYEALGYEEQD 129 (140)
T ss_pred HHHhCCCHHHHHHHHHH----HHHHHCCCCEEEEEEecCcHHHHHHHHHcCCcccc
Confidence 99999999999999999 88888888764332222 1 22345589999765
No 96
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=99.09 E-value=9.6e-10 Score=128.06 Aligned_cols=128 Identities=20% Similarity=0.240 Sum_probs=97.2
Q ss_pred hHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeE-EEecHHHHHHHHcCC--CeEEEcCC-ccCCCCceee
Q 007903 194 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEV-KKVDVTRMRERLDGG--CLVILSNL-GYSSSGEVLN 269 (585)
Q Consensus 194 ~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v-~~v~~~~I~~lL~~G--~IPVi~~v-~~~~~G~~~n 269 (585)
.|++.|++ +..+++.+ ++.... ++ ...+ .....+.|+++++.+ .|||+++. +.+.+|++..
T Consensus 140 ~L~~~G~~----a~~ld~~~--~i~~~~--------~~-~~~i~~~~~~~~l~~~~~~~~~~v~Vv~GF~g~~~~G~~tt 204 (810)
T PRK09466 140 LLNQQGLP----AAWLDARS--FLRAER--------AA-QPQVDEGLSYPLLQQLLAQHPGKRLVVTGFISRNEAGETVL 204 (810)
T ss_pred HHHhCCCC----cEEEcHHH--heecCC--------CC-CcccchhhhHHHHHHHHhccCCeEEEeeCccccCCCCCEEE
Confidence 47888987 56665543 343321 11 1222 122357788887654 89999985 7888898876
Q ss_pred e---ChHHHHHHHHHHcCCCEEEEeeccccc---C----CCCcccccccHHHHHHHHHhhchhhhHHHHHHhhhhcccc
Q 007903 270 C---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDI 338 (585)
Q Consensus 270 i---d~D~lAa~lA~~L~AdkLIilTDV~gl---~----~~~~lI~~it~~e~~~li~~~~~~~~~~~~~~~~~~~~~~ 338 (585)
+ .+|..|+.||.+|+|+.+.+.|||||+ | |++++|++|+.+|+.+|..-|++ ++|+..++-+...++
T Consensus 205 LGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea~ela~~Gak--VlHp~ti~pa~~~~I 281 (810)
T PRK09466 205 LGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAP--VLHARTLQPVSGSDI 281 (810)
T ss_pred cCCChHHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccCCHHHHHHHHHcCcc--ccCHHHHHHHHHcCC
Confidence 6 589999999999999999999999998 4 46899999999999999999885 888988877766554
No 97
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=99.03 E-value=1.6e-09 Score=99.47 Aligned_cols=124 Identities=21% Similarity=0.237 Sum_probs=91.2
Q ss_pred cccccccccCHHHHHHHHHHHHHccc---cccCCHHHHHhc------cCeEEEEEE---CCeEEEEEEEeeecc----CC
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVESGA---LVRRTDEELLKA------LDSFYVVER---EGQIIACAALFPFFK----EK 512 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~~~---~~~~~~e~l~~~------i~~~~Va~~---dg~IVG~~~l~~~~~----~~ 512 (585)
..||.++++|.+.+..|++++..... ....+.+.+... +..++++.. ++.++|++...+..+ ..
T Consensus 4 ~~IR~at~~D~~~i~rLikela~Fek~~~~v~~te~~l~~~~F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k~ 83 (163)
T KOG3216|consen 4 IRIRLATPKDCEDILRLIKELAEFEKLEDQVEATEENLARDGFIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGKQ 83 (163)
T ss_pred eEEEecCcccHHHHHHHHHHHHHHHHhccchhhchhhhhhhhccCCCccEEEEEEEecCCCceeEEeeeecccccccccc
Confidence 57999999999999999987765433 222344555543 145666654 789999998874322 35
Q ss_pred ceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCcccee--ccccccc-ccCeeecCc
Q 007903 513 CGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLR--GRTHSYY-RLKFNCSSK 576 (585)
Q Consensus 513 ~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~--~~a~~YY-rlGF~~~~~ 576 (585)
..+|.+|||.|+|||+|+|++|++++- +.|.++|+.+.-+..+. .++..+| +.|++....
T Consensus 84 ~iYleDlyV~e~yR~kG~Gs~Ll~~va----~~A~~~G~~rv~w~vldwN~rAi~lY~k~gaq~l~~ 146 (163)
T KOG3216|consen 84 GIYLEDLYVREQYRGKGIGSKLLKFVA----EEADKLGTPRVEWVVLDWNHRAILLYEKVGAQDLKE 146 (163)
T ss_pred eEEEEeeEecchhcccChHHHHHHHHH----HHHHHcCCCcEEEEEeccchhHHHHHHHhCccccce
Confidence 679999999999999999999999999 99999999986544332 2444444 789886543
No 98
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.01 E-value=1.1e-09 Score=90.79 Aligned_cols=76 Identities=30% Similarity=0.386 Sum_probs=60.9
Q ss_pred EEECCeEEEEEEEeeeccC----CceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccceecc--c-cc
Q 007903 493 VEREGQIIACAALFPFFKE----KCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRGR--T-HS 565 (585)
Q Consensus 493 a~~dg~IVG~~~l~~~~~~----~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~~~--a-~~ 565 (585)
++++|++||++.+.+...+ +..+|..++|+|+|||+|+|+.|+++++ +.+++.++........... . ..
T Consensus 1 ~~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~----~~~~~~g~~~i~~~~~~~n~~~~~~ 76 (83)
T PF00583_consen 1 AEEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAE----EWARKRGIKRIYLDVSPDNPAARRF 76 (83)
T ss_dssp EEETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHH----HHHHHTTESEEEEEEETTGHHHHHH
T ss_pred CcCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhh----hhHHhcCccEEEEEEeCCCHHHHHH
Confidence 5789999999999865543 6899999999999999999999999999 9999988877544332222 2 34
Q ss_pred ccccCee
Q 007903 566 YYRLKFN 572 (585)
Q Consensus 566 YYrlGF~ 572 (585)
|.++||+
T Consensus 77 ~~k~Gf~ 83 (83)
T PF00583_consen 77 YEKLGFE 83 (83)
T ss_dssp HHHTTEE
T ss_pred HHHcCCC
Confidence 5579996
No 99
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.01 E-value=1.8e-09 Score=99.79 Aligned_cols=117 Identities=20% Similarity=0.176 Sum_probs=83.4
Q ss_pred cccccccccCHHHHHHHHHHHHHccccccCCHHHHHhcc--C-eEEEEEECCeEEEEEEEeeeccCCceEEeeEEEccCC
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL--D-SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPEC 525 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~~~~~~~~~e~l~~~i--~-~~~Va~~dg~IVG~~~l~~~~~~~~aeI~~L~V~Pey 525 (585)
++||+++++|++.+.++.. .....+|..+.+.... . ..+++..++++||++.+.... ...++..++|+|+|
T Consensus 2 ~~iR~~~~~D~~~l~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~--~~~~~~~i~v~~~~ 75 (146)
T PRK09491 2 NTISSLTPADLPAAYHIEQ----RAHAFPWSEKTFASNQGERYLNLKLTVNGQMAAFAITQVVL--DEATLFNIAVDPDY 75 (146)
T ss_pred cchhcCChhhhHHHHHHHH----hcCCCCCCHHHHHHHHhcCceEEEEEECCeEEEEEEEEeec--CceEEEEEEECHHH
Confidence 4799999999999999842 2333456655554332 2 234456889999999887432 35678899999999
Q ss_pred cCCcHHHHHHHHHHhhhHHHHHHcCCcccCccc---eecccccccccCeeecC
Q 007903 526 RGQGQGDKLLGLCIWPLLSETRYDHISTNGFPF---LRGRTHSYYRLKFNCSS 575 (585)
Q Consensus 526 RGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~---~~~~a~~YYrlGF~~~~ 575 (585)
||+|+|+.|++.++ +.+++.++....... .....+.|.++||+..+
T Consensus 76 rg~G~g~~ll~~~~----~~~~~~~~~~~~~~~~~~N~~a~~~y~k~Gf~~~~ 124 (146)
T PRK09491 76 QRQGLGRALLEHLI----DELEKRGVATLWLEVRASNAAAIALYESLGFNEVT 124 (146)
T ss_pred ccCCHHHHHHHHHH----HHHHHCCCcEEEEEEccCCHHHHHHHHHcCCEEee
Confidence 99999999999999 888888876533221 11233456689998654
No 100
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=98.98 E-value=1.8e-09 Score=105.00 Aligned_cols=124 Identities=15% Similarity=0.190 Sum_probs=85.7
Q ss_pred cccccccccCHHHHHHHHHHHHHc-cccccCC-HHH----H----Hhcc-----Ce-EEEEEECCeEEEEEEEeeeccCC
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVES-GALVRRT-DEE----L----LKAL-----DS-FYVVEREGQIIACAALFPFFKEK 512 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~-~~~~~~~-~e~----l----~~~i-----~~-~~Va~~dg~IVG~~~l~~~~~~~ 512 (585)
..||+++++|++.+.+++...... .+..+|. ++. + .... .. +++.+.+|++||++.+... ...
T Consensus 44 ~~lR~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~iiG~i~l~~~-~~~ 122 (191)
T TIGR02382 44 PGARVATETDIPALRQLASAAFALSRFRAPWYAPDDSGRFYAQWVENAVRGTFDHQCLILRDASGDPRGYVTLREL-NDT 122 (191)
T ss_pred CcceeCChhhHHHHHHHHHHHhhccccCCCCcCHHHHHHHHHHHHHHHhcCCCCCeEEEEEccCCeEEEEEEEEec-CCC
Confidence 589999999999999998765321 1222221 111 1 1111 12 3344668899999998743 345
Q ss_pred ceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccc--eeccccccc-ccCeeecCcc
Q 007903 513 CGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPF--LRGRTHSYY-RLKFNCSSKS 577 (585)
Q Consensus 513 ~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~--~~~~a~~YY-rlGF~~~~~~ 577 (585)
.++|..++|+|+|||+|+|++|+++++ ++++++|+....... .+..+..|| |+||+..+.-
T Consensus 123 ~~~i~~l~V~p~~rGkG~G~~ll~~~~----~~a~~~g~~~I~l~v~~~N~~A~~~Y~klGF~~~~~~ 186 (191)
T TIGR02382 123 DARIGLLAVFPGAQSRGIGAELMQTAL----NWCYARGLTRLRVATQMGNTAALRLYIRSGANIESTA 186 (191)
T ss_pred ceEEEEEEECHHHcCCCHHHHHHHHHH----HHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCccccce
Confidence 689999999999999999999999999 888888987654322 223445555 7999977653
No 101
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=98.96 E-value=2.1e-09 Score=101.46 Aligned_cols=119 Identities=16% Similarity=0.171 Sum_probs=78.0
Q ss_pred cccccccCHHHHHHHHHHHHHccccccCCHHHHHhcc-CeEEEEE-ECCeEEEEEEEeeec-cCCceEEeeEEEccCCcC
Q 007903 451 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL-DSFYVVE-REGQIIACAALFPFF-KEKCGEVAAIGVSPECRG 527 (585)
Q Consensus 451 IR~at~~D~~~I~~Li~~~~~~~~~~~~~~e~l~~~i-~~~~Va~-~dg~IVG~~~l~~~~-~~~~aeI~~L~V~PeyRG 527 (585)
||+++.+|++++.+|.................+.... ..+++++ .++++||++.+.... ..+..++..++|+|+|||
T Consensus 1 IR~~~~~D~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg 80 (157)
T TIGR02406 1 FRPPRIEDGAGIWELVKDCPPLDLNSSYAYLLLCTDFADTSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARG 80 (157)
T ss_pred CCCCccccHHHHHHHHHhCCCCCcccceehhhhhhhcCCcEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhcc
Confidence 7999999999999996543211100000111122222 4466776 478999998765322 234678999999999999
Q ss_pred CcHHHHHHHHHHhhhHHHHHHcCCcccCccc--eecccc-cccccCeee
Q 007903 528 QGQGDKLLGLCIWPLLSETRYDHISTNGFPF--LRGRTH-SYYRLKFNC 573 (585)
Q Consensus 528 kGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~--~~~~a~-~YYrlGF~~ 573 (585)
+|+|++|+++++ ++++..++....... .+..++ .|.++||+-
T Consensus 81 ~GiG~~L~~~l~----~~a~~~~~~~i~~~v~~~N~~a~~ly~k~G~~~ 125 (157)
T TIGR02406 81 KGLARRLLEALL----ERVACERVRHLETTITPDNQASRALFKALARRR 125 (157)
T ss_pred CcHHHHHHHHHH----HHHHhCCCCEEEEEEcCCCHHHHHHHHHhCccc
Confidence 999999999999 888877776532211 123333 455799964
No 102
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=98.93 E-value=4.9e-09 Score=97.80 Aligned_cols=123 Identities=14% Similarity=0.145 Sum_probs=82.2
Q ss_pred cccccccccCHHHHHHHHHHHHHcc---ccccCCHHHHHhcc-----CeEEEEEECCeEEEEEEEeeeccC---CceEEe
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVESG---ALVRRTDEELLKAL-----DSFYVVEREGQIIACAALFPFFKE---KCGEVA 517 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~~---~~~~~~~e~l~~~i-----~~~~Va~~dg~IVG~~~l~~~~~~---~~aeI~ 517 (585)
..||+++++|++.+.++........ ...+.+.+.+...+ ..+++++.++++||++.+.....+ ..+++
T Consensus 4 i~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~- 82 (162)
T PRK10140 4 IVIRHAETRDYEAIRQIHAQPEVYHNTLQVPHPSDHMWQERLADRPGIKQLVACIDGDVVGHLTIDVQQRPRRSHVADF- 82 (162)
T ss_pred cEEEecchhhHHHHHHHHhCcccccccccCCCcCHHHHHHHhhcCCCcEEEEEEECCEEEEEEEEecccccccceEEEE-
Confidence 5799999999999999965321111 11122344444433 346788889999999998743221 23444
Q ss_pred eEEEccCCcCCcHHHHHHHHHHhhhHHHHHH-cCCcccCccce--eccc-ccccccCeeecCc
Q 007903 518 AIGVSPECRGQGQGDKLLGLCIWPLLSETRY-DHISTNGFPFL--RGRT-HSYYRLKFNCSSK 576 (585)
Q Consensus 518 ~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~-~gi~~~g~~~~--~~~a-~~YYrlGF~~~~~ 576 (585)
.++|+|+|||+|+|++|++.++ +++++ .++........ +..+ ..|.++||+..+.
T Consensus 83 ~~~v~p~~rg~Gig~~ll~~l~----~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~GF~~~g~ 141 (162)
T PRK10140 83 GICVDSRWKNRGVASALMREMI----EMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGT 141 (162)
T ss_pred EEEECHHHcCCCHHHHHHHHHH----HHHHhhCCccEEEEEEEcCCHHHHHHHHHCCCEEEee
Confidence 4899999999999999999999 77776 57665433222 2233 3455799998755
No 103
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=98.92 E-value=6.4e-09 Score=101.27 Aligned_cols=127 Identities=17% Similarity=0.251 Sum_probs=87.0
Q ss_pred ccccccccccCHHHHHHHHHHHHH-ccccccC-CHH-------HH-Hhcc-----CeEEEEE-ECCeEEEEEEEeeeccC
Q 007903 448 YEGTRTAKVTDLSGIKQIIQPLVE-SGALVRR-TDE-------EL-LKAL-----DSFYVVE-REGQIIACAALFPFFKE 511 (585)
Q Consensus 448 ~~~IR~at~~D~~~I~~Li~~~~~-~~~~~~~-~~e-------~l-~~~i-----~~~~Va~-~dg~IVG~~~l~~~~~~ 511 (585)
...||+++++|++.+.++...... ..+..+| +.+ .+ .... ..++++. .++++||++.+... ..
T Consensus 46 ~~~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~vG~~~l~~~-~~ 124 (194)
T PRK10975 46 TTGARVATETDIPALRQLAAQAFAQSRFRAPWYAPDDSGRFYAQWIENAVRGTFDHQCLLLRDASGQIQGFVTLREL-ND 124 (194)
T ss_pred CCCcccCCcccHHHHHHHHHHHhhhccccCccCChhHHHHHHHHHHHHhhccccCCcEEEEEcCCCCEEEEEEEEec-CC
Confidence 367999999999999999876432 2222222 111 11 1111 1344554 56899999998743 34
Q ss_pred CceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccce--eccccc-ccccCeeecCcccc
Q 007903 512 KCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFL--RGRTHS-YYRLKFNCSSKSFH 579 (585)
Q Consensus 512 ~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~--~~~a~~-YYrlGF~~~~~~~~ 579 (585)
..++|..++|+|+|||+|+|++|+++++ +++++.|+........ +..+.. |.++||+..+..|.
T Consensus 125 ~~~~i~~~~V~p~~rg~Gig~~Ll~~~~----~~a~~~g~~~i~l~v~~~N~~a~~~yek~Gf~~~~~~~~ 191 (194)
T PRK10975 125 TDARIGLLAVFPGAQGRGIGARLMQAAL----NWCQARGLTRLRVATQMGNLAALRLYIRSGANIESTAYW 191 (194)
T ss_pred CceEEEEEEEChhhcCCCHHHHHHHHHH----HHHHHcCCCEEEEEeCCCcHHHHHHHHHCCCeEeEEEee
Confidence 5688999999999999999999999999 8888888876533221 223344 55799998776553
No 104
>PRK10514 putative acetyltransferase; Provisional
Probab=98.91 E-value=3.5e-09 Score=97.38 Aligned_cols=116 Identities=17% Similarity=0.217 Sum_probs=74.4
Q ss_pred cccccccccCHHHHHHHHHHHHH--ccccccCCHHHHHhcc------CeEEEE-EECCeEEEEEEEeeeccCCceEEeeE
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVE--SGALVRRTDEELLKAL------DSFYVV-EREGQIIACAALFPFFKEKCGEVAAI 519 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~--~~~~~~~~~e~l~~~i------~~~~Va-~~dg~IVG~~~l~~~~~~~~aeI~~L 519 (585)
..||+++++|++++.+++..... ..+..+...+.+...+ ..++++ ..++++||++.+.. .++..+
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~------~~~~~~ 75 (145)
T PRK10514 2 ISIRRSRHEEGERLVAIWRRSVDATHDFLSAEDRAEIEELVRSFLPEAPLWVAVDERDQPVGFMLLSG------GHMEAL 75 (145)
T ss_pred ceeeecchhhHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHhccCceEEEEecCCcEEEEEEEec------CcEeEE
Confidence 46899999999999999765332 1122233333333222 234444 46899999988752 346789
Q ss_pred EEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccceecccccccccCeeecCc
Q 007903 520 GVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRGRTHSYYRLKFNCSSK 576 (585)
Q Consensus 520 ~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~~~a~~YYrlGF~~~~~ 576 (585)
+|+|+|||+|+|++||++++ +.+....+.. ..........|.|+||+..+.
T Consensus 76 ~v~p~~rgkGig~~Ll~~~~----~~~~~i~~~v--~~~N~~a~~~yek~Gf~~~~~ 126 (145)
T PRK10514 76 FVDPDVRGCGVGRMLVEHAL----SLHPELTTDV--NEQNEQAVGFYKKMGFKVTGR 126 (145)
T ss_pred EECHHhccCCHHHHHHHHHH----HhccccEEEe--ecCCHHHHHHHHHCCCEEecc
Confidence 99999999999999999999 5543322111 111112333455899998754
No 105
>PRK10314 putative acyltransferase; Provisional
Probab=98.91 E-value=3.2e-09 Score=99.93 Aligned_cols=122 Identities=11% Similarity=0.102 Sum_probs=78.0
Q ss_pred cccccccCHHHHHHHHHHHHHccccccCCHHHHHhc----cCeEEEEEECCeEEEEEEEeeecc-CCceEEeeEEEccCC
Q 007903 451 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKA----LDSFYVVEREGQIIACAALFPFFK-EKCGEVAAIGVSPEC 525 (585)
Q Consensus 451 IR~at~~D~~~I~~Li~~~~~~~~~~~~~~e~l~~~----i~~~~Va~~dg~IVG~~~l~~~~~-~~~aeI~~L~V~Pey 525 (585)
+...+.+++.++..|.....-.....+.. +++.. ....+++..++++||++.+.+..+ ....+|..++|+|+|
T Consensus 9 ~~~l~~~~~~~~~~lR~~VF~~eq~~~~~--e~D~~d~~~~~~h~~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~ 86 (153)
T PRK10314 9 HSELSVSQLYALLQLRCAVFVVEQNCPYQ--DIDGDDLTGDNRHILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEAL 86 (153)
T ss_pred hhhCCHHHHHHHHHHHHHHhhhhcCCCcc--ccCCCCCCCCcEEEEEEECCEEEEEEEEecCCCCCCCEEEEEEEECHHH
Confidence 45566667777777755443222212211 22221 234566778999999999975322 235799999999999
Q ss_pred cCCcHHHHHHHHHHhhhHHHHHHc-CCcccCccceeccccccc-ccCeeecCcccc
Q 007903 526 RGQGQGDKLLGLCIWPLLSETRYD-HISTNGFPFLRGRTHSYY-RLKFNCSSKSFH 579 (585)
Q Consensus 526 RGkGIGk~LL~~~~~~a~~~A~~~-gi~~~g~~~~~~~a~~YY-rlGF~~~~~~~~ 579 (585)
||+|+|++||++++ +++++. +.....+.. +..+..|| ++||+..+..|.
T Consensus 87 rG~GiG~~Lm~~~~----~~~~~~~~~~~i~L~a-~~~a~~fY~k~GF~~~g~~f~ 137 (153)
T PRK10314 87 RGEKVGQQLMSKTL----ESCTRHWPDKPVYLGA-QAHLQNFYQSFGFIPVTEVYE 137 (153)
T ss_pred hCCCHHHHHHHHHH----HHHHHHCCCCcEEEeh-HHHHHHHHHHCCCEECCCccc
Confidence 99999999999999 766654 433322222 12233455 799999987663
No 106
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=98.89 E-value=4e-09 Score=87.44 Aligned_cols=75 Identities=31% Similarity=0.616 Sum_probs=56.8
Q ss_pred eEEEEEECCeEEEEEEEeeeccCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccceeccccccc-
Q 007903 489 SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRGRTHSYY- 567 (585)
Q Consensus 489 ~~~Va~~dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~~~a~~YY- 567 (585)
.+++++++++++|++.+.+ .++..+|..++|+|+|||+|+|++||+++. +.++...+.. .-......||
T Consensus 4 ~~~~~~~~~~ivG~~~~~~--~~~~~~i~~~~v~~~~rg~Gig~~ll~~~~----~~~~~~~i~l----~~~~~~~~fY~ 73 (79)
T PF13508_consen 4 RFFVAEDDGEIVGFIRLWP--NEDFAYIGYLAVDPEYRGKGIGSKLLNYLL----EKAKSKKIFL----FTNPAAIKFYE 73 (79)
T ss_dssp EEEEEEETTEEEEEEEEEE--TTTEEEEEEEEE-GGGTTSSHHHHHHHHHH----HHHTCSEEEE----EEEHHHHHHHH
T ss_pred EEEEEEECCEEEEEEEEEE--cCCEEEEEEEEECHHHcCCCHHHHHHHHHH----HHcCCCcEEE----EEcHHHHHHHH
Confidence 5788999999999999974 345889999999999999999999999998 6664433321 1123444455
Q ss_pred ccCeee
Q 007903 568 RLKFNC 573 (585)
Q Consensus 568 rlGF~~ 573 (585)
++||+.
T Consensus 74 ~~GF~~ 79 (79)
T PF13508_consen 74 KLGFEE 79 (79)
T ss_dssp HTTEEE
T ss_pred HCcCCC
Confidence 799974
No 107
>PRK01346 hypothetical protein; Provisional
Probab=98.89 E-value=7.1e-09 Score=112.63 Aligned_cols=126 Identities=15% Similarity=0.092 Sum_probs=87.0
Q ss_pred ccccccccccCHHHHHHHHHHHHHccccccCCHHHHHhcc--CeEEEEEECCeEEEEEEEeeec-----c--CCceEEee
Q 007903 448 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL--DSFYVVEREGQIIACAALFPFF-----K--EKCGEVAA 518 (585)
Q Consensus 448 ~~~IR~at~~D~~~I~~Li~~~~~~~~~~~~~~e~l~~~i--~~~~Va~~dg~IVG~~~l~~~~-----~--~~~aeI~~ 518 (585)
.++||+++++|++++.+|......... .....+.+.... ..++++++++++||++.+.++. . -+.+.|..
T Consensus 6 ~~~iR~~~~~D~~~i~~L~~~~f~~~~-~~~~~~~~~~~~~~~~~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~ 84 (411)
T PRK01346 6 AITIRTATEEDWPAWFRAAATGFGDSP-SDEELEAWRALVEPDRTLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTA 84 (411)
T ss_pred CceeecCCHHHHHHHHHHHHHHcCCCC-ChHHHHHHHHhcCcCCeEEEEECCEEEEEEEEeccccccCCCCccceeEEEE
Confidence 367999999999999999654322111 111112222222 4567888999999999987432 1 14688999
Q ss_pred EEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccceecccccccccCeeecCccccc
Q 007903 519 IGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRGRTHSYYRLKFNCSSKSFHI 580 (585)
Q Consensus 519 L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~~~a~~YYrlGF~~~~~~~~~ 580 (585)
++|+|+|||+|+|++||++++ +.+++.|+....+.. .....|.++||.........
T Consensus 85 v~V~P~~RgrGig~~Ll~~~l----~~a~~~g~~~~~L~~--~~~~~Y~r~Gf~~~~~~~~~ 140 (411)
T PRK01346 85 VTVAPTHRRRGLLTALMREQL----RRIRERGEPVAALTA--SEGGIYGRFGYGPATYSQSL 140 (411)
T ss_pred EEEChhhcCCCHHHHHHHHHH----HHHHHCCCcEEEEEC--CchhhHhhCCCeeccceEEE
Confidence 999999999999999999999 889988886543321 12234557999988654433
No 108
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=98.88 E-value=2.3e-08 Score=95.25 Aligned_cols=120 Identities=21% Similarity=0.282 Sum_probs=86.1
Q ss_pred ccccccccccCHHHHHHHHHHHHHccccccCCHHHHHhcc----CeEEEEEECCeEEEEEEEeeeccC----CceEEeeE
Q 007903 448 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVEREGQIIACAALFPFFKE----KCGEVAAI 519 (585)
Q Consensus 448 ~~~IR~at~~D~~~I~~Li~~~~~~~~~~~~~~e~l~~~i----~~~~Va~~dg~IVG~~~l~~~~~~----~~aeI~~L 519 (585)
++.||..++.|++.+.++.+.....+.. ....+.+.... ..-+|+++||++||.+.+++..-. ...-+.-+
T Consensus 3 ~~~ir~e~~~d~~~i~~~~~~aF~~~~e-~~~v~~lR~~~~~~~~LslVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaPL 81 (171)
T COG3153 3 MMLIRTETPADIPAIEALTREAFGPGRE-AKLVDKLREGGRPDLTLSLVAEDDGEVVGHILFSPVTVGGEELGWLGLAPL 81 (171)
T ss_pred ccEEEecChhhHHHHHHHHHHHhhcchH-HHHHHHHHhcCCcccceeEEEeeCCEEEEEEEEeEEEecCcccceEEEEeE
Confidence 4679999999999999996554431110 01122233222 456889999999999999864322 33457789
Q ss_pred EEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccceecccccccccCeeecC
Q 007903 520 GVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRGRTHSYYRLKFNCSS 575 (585)
Q Consensus 520 ~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~~~a~~YYrlGF~~~~ 575 (585)
+|+|+|||||||++|+...+ +.++..|.... .+-+...+|-|+||+...
T Consensus 82 aV~p~~qg~GIG~~Lvr~~l----e~a~~~G~~~v---~vlGdp~YY~rfGF~~~~ 130 (171)
T COG3153 82 AVDPEYQGQGIGSALVREGL----EALRLAGASAV---VVLGDPTYYSRFGFEPAA 130 (171)
T ss_pred EEchhhcCCcHHHHHHHHHH----HHHHHCCCCEE---EEecCcccccccCcEEcc
Confidence 99999999999999999999 99999998753 233455444589999874
No 109
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.88 E-value=1.3e-08 Score=96.70 Aligned_cols=124 Identities=26% Similarity=0.221 Sum_probs=90.5
Q ss_pred cccccccccCHHHHHHHHHHHHHccc----cccCCHHHHHhcc-------CeEEEEEEC-CeEEEEEEEeeeccC---Cc
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVESGA----LVRRTDEELLKAL-------DSFYVVERE-GQIIACAALFPFFKE---KC 513 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~~~----~~~~~~e~l~~~i-------~~~~Va~~d-g~IVG~~~l~~~~~~---~~ 513 (585)
+.||+++.+|++.|.++++....... ..+.+.+.+...+ -.++|++.+ |+++|++.+.++... ..
T Consensus 2 ~~ir~~~~~Dl~~I~~IY~~~v~~~~a~~e~~~~~~~~~~~~~~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~ 81 (169)
T COG1247 2 MEIRPATAADLEAILEIYNGAVENTAATFEEDPVSLEERAAWFSGRTRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRH 81 (169)
T ss_pred cEEecChHHhHHHHHHHHHHhhhcceEEEeccCCCHHHHHHHHHhcccCCceEEEEEcCCCeEEEEEEeeeccCccccce
Confidence 46999999999999999988776653 2344555555433 256777665 999999999865321 11
Q ss_pred eEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccC---ccceecccccccccCeeecCc
Q 007903 514 GEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNG---FPFLRGRTHSYYRLKFNCSSK 576 (585)
Q Consensus 514 aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g---~~~~~~~a~~YYrlGF~~~~~ 576 (585)
.--.++||+|++||+|+|++||+.++ +.++.+|+.+.- +.........+.++||+..+.
T Consensus 82 tve~SiYv~~~~~g~GiG~~Ll~~Li----~~~~~~g~~~lva~I~~~n~aSi~lh~~~GF~~~G~ 143 (169)
T COG1247 82 TVELSIYLDPAARGKGLGKKLLQALI----TEARALGVRELVAGIESDNLASIALHEKLGFEEVGT 143 (169)
T ss_pred EEEEEEEECcccccccHHHHHHHHHH----HHHHhCCeEEEEEEEcCCCcHhHHHHHHCCCEEecc
Confidence 22347999999999999999999999 999999997641 111224455688899987754
No 110
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=98.87 E-value=1.1e-08 Score=91.49 Aligned_cols=109 Identities=21% Similarity=0.266 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHHccccccCCHHHHHhcc----CeEEEEEECCeEEEEEEEeeeccCCceEEeeEEEccCCcCCcHHHH
Q 007903 458 DLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDK 533 (585)
Q Consensus 458 D~~~I~~Li~~~~~~~~~~~~~~e~l~~~i----~~~~Va~~dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkGIGk~ 533 (585)
|++++.++. ...+..+++.+.+...+ ..++++.+++++||++.+.. .....++..++|+|+|||+|+|++
T Consensus 1 d~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~--~~~~~~i~~~~v~~~~rg~G~g~~ 74 (131)
T TIGR01575 1 DLKAVLEIE----AAAFAFPWTEAQFAEELANYHLCYLLARIGGKVVGYAGVQI--VLDEAHILNIAVKPEYQGQGIGRA 74 (131)
T ss_pred CHHHHHHHH----HhhCCCCCCHHHHHHHhcCCCceEEEEecCCeEEEEEEEEe--cCCCeEEEEEEECHHHcCCCHHHH
Confidence 567777773 33444466666665554 34566777899999999774 234678899999999999999999
Q ss_pred HHHHHHhhhHHHHHHcCCcccCccc--eecccc-cccccCeeecCc
Q 007903 534 LLGLCIWPLLSETRYDHISTNGFPF--LRGRTH-SYYRLKFNCSSK 576 (585)
Q Consensus 534 LL~~~~~~a~~~A~~~gi~~~g~~~--~~~~a~-~YYrlGF~~~~~ 576 (585)
|+++++ +.+.+.++...-... .+..+. .|.++||+..+.
T Consensus 75 ll~~~~----~~~~~~~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~ 116 (131)
T TIGR01575 75 LLRELI----DEAKGRGVNEIFLEVRVSNIAAQALYKKLGFNEIAI 116 (131)
T ss_pred HHHHHH----HHHHHcCCCeEEEEEecccHHHHHHHHHcCCCcccc
Confidence 999999 888887765542211 112233 455799987644
No 111
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.86 E-value=1.1e-08 Score=115.10 Aligned_cols=165 Identities=19% Similarity=0.174 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHcCCCeEEEecCccchhhH----HHHHhcCCCceee------ccc----cccccccc-cccCHHHHHHH
Q 007903 401 LSELAAAAFVCRRGVQRVHLLDGTIGGVLL----LELFKRDGMGTMV------ASD----LYEGTRTA-KVTDLSGIKQI 465 (585)
Q Consensus 401 ~~kl~aa~~a~~~Gv~~v~I~~g~~~~~ll----~el~~~~~~GT~i------~~d----~~~~IR~a-t~~D~~~I~~L 465 (585)
..+|..++..=+.|-.-+.+. -+.|+.+| +|||-+ ..-|.= .+. ..+.||++ +++|++++.+|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~IR~~~~~~D~~~I~~L 100 (547)
T TIGR03103 23 PQELAEALREEGPGRRDIALY-VRDPHVVLALAPQELFLD-PSHTYRLWLTQYRPAARTPRGFTVRRLRGPADVDAINRL 100 (547)
T ss_pred HHHHHHHHHhcCCCCcceEEE-ecCchhhhhhCcHhhccC-chhceEeccccCCcCcCCCCCcEEEeCCChhHHHHHHHH
Confidence 345666666555554433322 34566544 345542 222210 111 12679997 78999999999
Q ss_pred HHHHHHccccccCCHHHHHhcc----CeEEEEEE--CCeEEEEEEEeee----c-cCCceEEeeEEEccCCcCCcHHHHH
Q 007903 466 IQPLVESGALVRRTDEELLKAL----DSFYVVER--EGQIIACAALFPF----F-KEKCGEVAAIGVSPECRGQGQGDKL 534 (585)
Q Consensus 466 i~~~~~~~~~~~~~~e~l~~~i----~~~~Va~~--dg~IVG~~~l~~~----~-~~~~aeI~~L~V~PeyRGkGIGk~L 534 (585)
++. ..+.+++.+.+...+ ..+++++. +|++|||+..... . ....++|..|+|+|+|||+|||++|
T Consensus 101 ~~~----~~~~p~~~~~~~~~~~~~~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~L 176 (547)
T TIGR03103 101 YAA----RGMVPVRVDFVLDHRHSRAITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEAL 176 (547)
T ss_pred HHh----cCCCCCCHHHHHHHhcCCCceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHH
Confidence 644 233455555554433 45778875 6899999875321 1 1235789999999999999999999
Q ss_pred HHHHHhhhHHHHHHcCCcccCccce--eccccccc-ccCeeecC
Q 007903 535 LGLCIWPLLSETRYDHISTNGFPFL--RGRTHSYY-RLKFNCSS 575 (585)
Q Consensus 535 L~~~~~~a~~~A~~~gi~~~g~~~~--~~~a~~YY-rlGF~~~~ 575 (585)
|++++ +++++.|+....+... +..+..|| ++||+...
T Consensus 177 l~~l~----e~a~~~G~~~i~L~V~~~N~~Ai~fY~klGf~~~~ 216 (547)
T TIGR03103 177 VRALA----EHFQSRGCAYMDLSVMHDNEQAIALYEKLGFRRIP 216 (547)
T ss_pred HHHHH----HHHHHCCCCEEEEEEcCCCHHHHHHHHHCCCEEee
Confidence 99999 8899999887654332 23444455 79998764
No 112
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=98.86 E-value=2.4e-08 Score=92.74 Aligned_cols=121 Identities=23% Similarity=0.322 Sum_probs=79.7
Q ss_pred cccccccCHHHHHHHHHHHHHcccccc----CCHHHHHhcc--------CeEEEEEE-CCeEEEEEEEeeecc-CCceEE
Q 007903 451 TRTAKVTDLSGIKQIIQPLVESGALVR----RTDEELLKAL--------DSFYVVER-EGQIIACAALFPFFK-EKCGEV 516 (585)
Q Consensus 451 IR~at~~D~~~I~~Li~~~~~~~~~~~----~~~e~l~~~i--------~~~~Va~~-dg~IVG~~~l~~~~~-~~~aeI 516 (585)
||+++++|++.+.++++.......... .+.+..+..+ ..++++.. +|++||++.+..... ...+++
T Consensus 1 IR~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~iiG~~~~~~~~~~~~~~~~ 80 (155)
T PF13420_consen 1 IRPATEEDLEEILKLYNEPRHEYFFTFEYPEDSEESFERWIESIIDSSKQRLFLVAEEDGKIIGYVSLRDIDPYNHTAEL 80 (155)
T ss_dssp EEE--GGGHHHHHHHHHHHHHHTSSSSCSSHS-HHHHHHHHHHHHHHHTTEEEEEEECTTEEEEEEEEEESSSGTTEEEE
T ss_pred CCCCcHHHHHHHHHHHhhhhhcceeEecCCCCCHHHHHHHHHHhcccCCCcEEEEEEcCCcEEEEEEEEeeeccCCEEEE
Confidence 799999999999999876433232211 1222222111 44555555 999999999985433 345555
Q ss_pred eeEEEccCCcCCcHHHHHHHHHHhhhHHHH-HHcCCcccCccce--eccc-ccccccCeeecCc
Q 007903 517 AAIGVSPECRGQGQGDKLLGLCIWPLLSET-RYDHISTNGFPFL--RGRT-HSYYRLKFNCSSK 576 (585)
Q Consensus 517 ~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A-~~~gi~~~g~~~~--~~~a-~~YYrlGF~~~~~ 576 (585)
.++|.|+||++|+|+.|++.++ +.| ++.|+...-.... +..+ ..|.++||+..+.
T Consensus 81 -~~~v~~~~~~~gig~~l~~~l~----~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~ 139 (155)
T PF13420_consen 81 -SIYVSPDYRGKGIGRKLLDELI----EYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGE 139 (155)
T ss_dssp -EEEEEGGGTTSSHHHHHHHHHH----HHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEE
T ss_pred -eeEEChhHCCCcHHHHHHHHHH----HHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEE
Confidence 4899999999999999999999 999 8999987543222 2233 3455799997743
No 113
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.83 E-value=1.4e-08 Score=91.45 Aligned_cols=127 Identities=17% Similarity=0.210 Sum_probs=96.6
Q ss_pred cccccccccCHHH-HHHHHHHHHHccccccCCHHHHHhcc-------C-eEE-EEEE--CCeEEEEEEEeee-----ccC
Q 007903 449 EGTRTAKVTDLSG-IKQIIQPLVESGALVRRTDEELLKAL-------D-SFY-VVER--EGQIIACAALFPF-----FKE 511 (585)
Q Consensus 449 ~~IR~at~~D~~~-I~~Li~~~~~~~~~~~~~~e~l~~~i-------~-~~~-Va~~--dg~IVG~~~l~~~-----~~~ 511 (585)
..+|+...+|+.. ..+++.++...+.. +++++...+ + .+. |+++ .++|||.+.+..- ...
T Consensus 7 ~~lR~L~~~D~~kGf~elL~qLT~vG~v---t~e~F~krf~~mk~~~~~Y~i~Vied~~s~~vigtatL~IE~KfIh~~g 83 (150)
T KOG3396|consen 7 FKLRPLEEDDYGKGFIELLKQLTSVGVV---TREQFEKRFEAMKKSGDWYYIVVIEDKESEKVIGTATLFIERKFIHGCG 83 (150)
T ss_pred eEEeecccccccchHHHHHHHHhhcccc---CHHHHHHHHHHHHhcCCcEEEEEEEeCCcCeEEEEEEEEEehhhhhccc
Confidence 5799999999986 88887777776665 345554443 3 333 3333 3799999998631 124
Q ss_pred CceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccceecccccccccCeeecCccccccc
Q 007903 512 KCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRGRTHSYYRLKFNCSSKSFHISL 582 (585)
Q Consensus 512 ~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~~~a~~YYrlGF~~~~~~~~~~~ 582 (585)
..++|.++.|+++|||+++|+.|++.+. ..++++|++...+........+|.+.||.-.+..|.+++
T Consensus 84 ~rGhiEDVVV~~~~rgk~LGkllv~~Lv----~l~k~lgcYKi~LdC~~~nv~FYeKcG~s~~~~~M~~r~ 150 (150)
T KOG3396|consen 84 SRGHIEDVVVDSEYRGKQLGKLLVETLV----DLAKSLGCYKIILDCDPKNVKFYEKCGYSNAGNEMTKRF 150 (150)
T ss_pred ccCceeEEEeChhhhhhHHhHHHHHHHH----HHHHhcCcEEEEEecchhhhhHHHHcCccccchhheecC
Confidence 6789999999999999999999999999 999999999876655555556666899999887776653
No 114
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.81 E-value=1.8e-08 Score=106.12 Aligned_cols=120 Identities=13% Similarity=0.150 Sum_probs=88.6
Q ss_pred cccccccccCHHHHHHHHHHHHHccc-cccCCHHHHHhcc--CeEEEEEE-----CCeEEEEEEEeeeccCCceEEeeEE
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVESGA-LVRRTDEELLKAL--DSFYVVER-----EGQIIACAALFPFFKEKCGEVAAIG 520 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~~~-~~~~~~e~l~~~i--~~~~Va~~-----dg~IVG~~~l~~~~~~~~aeI~~L~ 520 (585)
++||+++++|++.+.+|.+...+... ...++.+++...+ ..++++.. ++.+||++.+.. .....+|..++
T Consensus 187 ~~Ir~a~~~Dl~ri~~L~~~tnqfn~~~~~~s~~~i~~~l~~~~~~~~~~~d~~gd~givG~~~~~~--~~~~~~I~~l~ 264 (320)
T TIGR01686 187 LNISKNDEQNVQRVEELLGRTNQFNATYTRLNQEDVAQHMQKEEIVTVSMSDRFGDSGIIGIFVFEK--KEGNLFIDDLC 264 (320)
T ss_pred EEEEECChhhhHHHHHHHHhHHhhhccCccCCHHHHHHHhcCCCEEEEEEEecCCCCceEEEEEEEe--cCCcEEEEEEE
Confidence 46999999999999999765433221 2356677776655 23443432 568999998763 34578999999
Q ss_pred EccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccce----eccccccc-ccCeeec
Q 007903 521 VSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFL----RGRTHSYY-RLKFNCS 574 (585)
Q Consensus 521 V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~----~~~a~~YY-rlGF~~~ 574 (585)
|+|++||+|+|++||++++ +.|++.|+....+.+. +..+..|| ++||+..
T Consensus 265 vs~r~~grGig~~Ll~~l~----~~a~~~G~~~i~l~v~~~~~N~~A~~fY~~~GF~~~ 319 (320)
T TIGR01686 265 MSCRALGRGVETRMLRWLF----EQALDLGNHNARLYYRRTERNMPFLSFYEQIGFEDE 319 (320)
T ss_pred EcHhHhcCcHHHHHHHHHH----HHHHHcCCCeEEEEEeeCCCchHHHHHHHHcCCccC
Confidence 9999999999999999999 9999999986544332 23445566 7999854
No 115
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.76 E-value=2.8e-08 Score=102.58 Aligned_cols=119 Identities=13% Similarity=0.181 Sum_probs=80.2
Q ss_pred ccccccCHHHHHHHHHHHHHccccccCCHHHHHhcc-------CeEEEEEECCeEEEEEEEeeeccCCceEEeeEEEccC
Q 007903 452 RTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL-------DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPE 524 (585)
Q Consensus 452 R~at~~D~~~I~~Li~~~~~~~~~~~~~~e~l~~~i-------~~~~Va~~dg~IVG~~~l~~~~~~~~aeI~~L~V~Pe 524 (585)
.+.+++|++++.+|+..........+++.+.. ..+ ...+++..++++||++.+.+. .....++..++|+|+
T Consensus 4 ~~l~~~d~~~v~~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~-~~~~~~~~~l~V~p~ 81 (292)
T TIGR03448 4 AALDADLRRDVRELLAAATAVDGVAPVSEQVL-RGLREPGAGHTRHLVAVDSDPIVGYANLVPA-RGTDPAMAELVVHPA 81 (292)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCCCHHHH-hhccccCCCCceEEEEEECCEEEEEEEEEcC-CCCcceEEEEEECHh
Confidence 35788999999999876555433345665443 222 246778889999999998743 234468999999999
Q ss_pred CcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccce--eccccccc-ccCeeecCccccc
Q 007903 525 CRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFL--RGRTHSYY-RLKFNCSSKSFHI 580 (585)
Q Consensus 525 yRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~--~~~a~~YY-rlGF~~~~~~~~~ 580 (585)
|||+|||++||++++ +.+. ....+... +..+..|| ++||+.....+.+
T Consensus 82 ~rg~GiG~~Ll~~~~----~~~~----~~~~~~~~~~n~~a~~fy~~~Gf~~~~~~~~~ 132 (292)
T TIGR03448 82 HRRRGIGRALIRALL----AKGG----GRLRVWAHGDLPAARALASRLGLVPTRELLQM 132 (292)
T ss_pred hcCCCHHHHHHHHHH----Hhcc----CceEEEEcCCCHHHHHHHHHCCCEEccEEEEE
Confidence 999999999999999 5443 11111111 12334445 7999877654443
No 116
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=98.75 E-value=4.5e-08 Score=92.78 Aligned_cols=124 Identities=19% Similarity=0.219 Sum_probs=86.6
Q ss_pred cccccccccccCHH--HHHHHHHHHHHcccc--ccCCHHHHHhcc----CeEEEEEE---CC----eEEEEEEEeeeccC
Q 007903 447 LYEGTRTAKVTDLS--GIKQIIQPLVESGAL--VRRTDEELLKAL----DSFYVVER---EG----QIIACAALFPFFKE 511 (585)
Q Consensus 447 ~~~~IR~at~~D~~--~I~~Li~~~~~~~~~--~~~~~e~l~~~i----~~~~Va~~---dg----~IVG~~~l~~~~~~ 511 (585)
....+|.++..|+. .+.++ ....+. .+|+...+...+ ..++++.. ++ +++||+........
T Consensus 10 ~~~~ir~~~~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~~~ 85 (177)
T COG0456 10 DKVTIREAINKDLLDVALAAL----EARTFDIRLPWSREYFEKDLTQAPELLLVAETGGLDGLLDGKVVGFLLVRVVDGR 85 (177)
T ss_pred cceehhhhhhcccchHHHHHH----hhhcCCCCCcchHHHHHHHHhhCcceeEEEEecccCCCcccceeEEEEEEEecCC
Confidence 44679999999999 66666 444444 567777776665 45566665 33 59999998632221
Q ss_pred ----CceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCC-cccCccce--eccccc-ccccCeeecCccc
Q 007903 512 ----KCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHI-STNGFPFL--RGRTHS-YYRLKFNCSSKSF 578 (585)
Q Consensus 512 ----~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi-~~~g~~~~--~~~a~~-YYrlGF~~~~~~~ 578 (585)
..++|..++|+|+|||+|||++|+++++ +.+++.++ ....+... +..+.. |.++||+......
T Consensus 86 ~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~----~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~~GF~~~~~~~ 156 (177)
T COG0456 86 PSADHEGHIYNLAVDPEYRGRGIGRALLDEAL----ERLRERGLADKIVLEVRESNEAAIGLYRKLGFEVVKIRK 156 (177)
T ss_pred ccccCccEEEEEEEChHhhcCCHHHHHHHHHH----HHHHhcCCCceEEEEEecCChHHHHHHHHcCCEEEeeeh
Confidence 2789999999999999999999999999 88888776 44333222 123334 5579999764433
No 117
>PHA01807 hypothetical protein
Probab=98.73 E-value=6.3e-08 Score=91.23 Aligned_cols=99 Identities=19% Similarity=0.134 Sum_probs=68.4
Q ss_pred cccccCHHHHHHHHHHHHHcccc-ccCC-HH----HHHhcc----CeEEEEEECCeEEEEEEEeeeccCCceE---EeeE
Q 007903 453 TAKVTDLSGIKQIIQPLVESGAL-VRRT-DE----ELLKAL----DSFYVVEREGQIIACAALFPFFKEKCGE---VAAI 519 (585)
Q Consensus 453 ~at~~D~~~I~~Li~~~~~~~~~-~~~~-~e----~l~~~i----~~~~Va~~dg~IVG~~~l~~~~~~~~ae---I~~L 519 (585)
.++.+|+..+.+|......+.-. .+|. .+ .+...+ ...++++.|+++||++.+.+.......+ +..|
T Consensus 8 ~~~~~d~~~~~~l~l~~l~e~p~~~~w~s~ee~~~~~~~~~~~~~~~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~l 87 (153)
T PHA01807 8 HAKAGTPSELQGLCWLAIQELEEFTLFRSKEEALERILDSTESNDRTELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQ 87 (153)
T ss_pred hhhhCCHHHHHHHHHHHHHhCccCCCCCChHHHHHHHHHHhhCCCceEEEEEECCEEEEEEEEEcCCCcceeeeccceeE
Confidence 36778999998887655443221 1121 12 222211 3457788899999999987433332334 4457
Q ss_pred EEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccC
Q 007903 520 GVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNG 555 (585)
Q Consensus 520 ~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g 555 (585)
||+|+|||+|+|++||++++ ++|++.|+....
T Consensus 88 YV~pe~RG~GiG~~Ll~~~~----~~Ar~~G~~~l~ 119 (153)
T PHA01807 88 YVLPEYRNAGVAREFLRELI----RLAGEGNLPLIA 119 (153)
T ss_pred EECHHHcCCCHHHHHHHHHH----HHHHHCCCCEEE
Confidence 99999999999999999999 999999987653
No 118
>PRK10562 putative acetyltransferase; Provisional
Probab=98.67 E-value=6.3e-08 Score=89.51 Aligned_cols=119 Identities=15% Similarity=0.125 Sum_probs=74.3
Q ss_pred ccccccccCHHHHHHHHHHHHHc--cccc--cC--CHHHHHhcc---CeEEEEEECCeEEEEEEEeeeccCCceEEeeEE
Q 007903 450 GTRTAKVTDLSGIKQIIQPLVES--GALV--RR--TDEELLKAL---DSFYVVEREGQIIACAALFPFFKEKCGEVAAIG 520 (585)
Q Consensus 450 ~IR~at~~D~~~I~~Li~~~~~~--~~~~--~~--~~e~l~~~i---~~~~Va~~dg~IVG~~~l~~~~~~~~aeI~~L~ 520 (585)
+||+++.+|++.+.+++...... .+.. .| ....+.... ..++++..++++||++.+.. ..++..++
T Consensus 1 ~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~iG~~~~~~-----~~~i~~~~ 75 (145)
T PRK10562 1 MIREYQPSDLPAILQLWLESTIWAHPFIKEQYWRESAPLVRDVYLPAAQTWVWEEDGKLLGFVSVLE-----GRFVGALF 75 (145)
T ss_pred CcccccchhhHHHHHHHHHhccccCCCCCHHHHHHhHHHhhhhhcCcccEEEEEECCEEEEEEEEee-----ccEEEEEE
Confidence 38999999999999996433211 1110 00 001111111 34667788899999998762 23688899
Q ss_pred EccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccceecccc-cccccCeeecCccccc
Q 007903 521 VSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRGRTH-SYYRLKFNCSSKSFHI 580 (585)
Q Consensus 521 V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~~~a~-~YYrlGF~~~~~~~~~ 580 (585)
|+|+|||+|+|++|+++++ +.+....+.. ...+..+. .|.|+||+..+..++-
T Consensus 76 v~~~~rg~G~g~~ll~~~~----~~~~~~~~~v---~~~N~~s~~~y~k~Gf~~~~~~~~~ 129 (145)
T PRK10562 76 VAPKAVRRGIGKALMQHVQ----QRYPHLSLEV---YQKNQRAVNFYHAQGFRIVDSAWQE 129 (145)
T ss_pred ECHHHcCCCHHHHHHHHHH----hhCCeEEEEE---EcCChHHHHHHHHCCCEEccccccC
Confidence 9999999999999999998 5332221111 01122333 4557999998765443
No 119
>PRK13688 hypothetical protein; Provisional
Probab=98.65 E-value=3.6e-08 Score=93.23 Aligned_cols=108 Identities=15% Similarity=0.167 Sum_probs=71.7
Q ss_pred cccccccccCHHHHHHHHHHHHHccccccCCHHHHHhccCeEEEEEECCeEEEEEEEeee---------ccCCceEEeeE
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPF---------FKEKCGEVAAI 519 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~~~~~~~~~e~l~~~i~~~~Va~~dg~IVG~~~l~~~---------~~~~~aeI~~L 519 (585)
.+||++..+|++++.++ ....+. . ..-..++++..++++||++.+... ..++.++|..+
T Consensus 18 ~~~~~~~~~dl~~l~~l----~~~~f~-~-------~~~~~~~~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l 85 (156)
T PRK13688 18 KKFREFGNQELSMLEEL----QANIIE-N-------DSESPFYGIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKL 85 (156)
T ss_pred HHHHHhcHHHHHHHHhh----hhhEee-c-------CCCCCEEEEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEE
Confidence 46788999999999888 222221 0 111456778889999999887421 12356789999
Q ss_pred EEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccceecccccccccCeeecCcc
Q 007903 520 GVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRGRTHSYYRLKFNCSSKS 577 (585)
Q Consensus 520 ~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~~~a~~YYrlGF~~~~~~ 577 (585)
+|+|+|||+|+|++||+++. +. ++... .........+|.++||++.+..
T Consensus 86 ~V~p~~rgkGiG~~Ll~~a~----~~----~~~~~-~~~~~~a~~FY~k~GF~~~~~~ 134 (156)
T PRK13688 86 EVLPKYQNRGYGEMLVDFAK----SF----QLPIK-TIARNKSKDFWLKLGFTPVEYK 134 (156)
T ss_pred EECHHHcCCCHHHHHHHHHH----Hh----CCeEE-EEeccchHHHHHhCCCEEeEEe
Confidence 99999999999999998776 32 33211 1111223334447999987543
No 120
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=98.63 E-value=8.3e-08 Score=89.26 Aligned_cols=122 Identities=22% Similarity=0.160 Sum_probs=78.9
Q ss_pred ccccc-ccCHHHHHHHHHHHHHccc-cccCC---HHHHHhcc-----CeEEEEEECCeEEEEEEEeeec-----cCCceE
Q 007903 451 TRTAK-VTDLSGIKQIIQPLVESGA-LVRRT---DEELLKAL-----DSFYVVEREGQIIACAALFPFF-----KEKCGE 515 (585)
Q Consensus 451 IR~at-~~D~~~I~~Li~~~~~~~~-~~~~~---~e~l~~~i-----~~~~Va~~dg~IVG~~~l~~~~-----~~~~ae 515 (585)
+|+++ .+|++.|.++++......+ ...++ .+.+.+.+ ...+|+..||+++||+.+.... .+....
T Consensus 1 ~R~a~~~~Dl~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~ 80 (152)
T PF13523_consen 1 LRPATTPDDLPLILQWLNQPHVREFWDQDPSQEWVEEYPEQLEADPGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRG 80 (152)
T ss_dssp EEE---GGGHHHHHHHHTSHHHHCCH-CCCTHHHHHHHHHHHCHTTTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEE
T ss_pred CeeCccHHHHHHHHHHHHhHHHHHHccCCCCHHHHHHHHhhhcccCCceEEEEEECCEEEEEEEEecccccccCCCCEEE
Confidence 69999 9999999999876543333 22222 22233332 3678999999999999886311 345667
Q ss_pred EeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHc-CCcccCcc---ceecccccccccCeeecCc
Q 007903 516 VAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYD-HISTNGFP---FLRGRTHSYYRLKFNCSSK 576 (585)
Q Consensus 516 I~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~-gi~~~g~~---~~~~~a~~YYrlGF~~~~~ 576 (585)
++.++|+|+|||+|+|+.+++.++ +.+.+. ++...... ......+.|.+.||...+.
T Consensus 81 ~~~~~~~~~~rg~G~g~~~~~~~~----~~~~~~~~~~~i~~~~~~~N~~~~~~~~k~GF~~~g~ 141 (152)
T PF13523_consen 81 IHRLIVDPEYRGQGLGKAMLRALI----EFLFEDPGVDRIVLDPHEDNTRAIRLYEKAGFRKVGE 141 (152)
T ss_dssp EEEEESTGGGTTSSHHHHHHHHHH----HHHHTSTT--EEEEEEBTT-HHHHHHHHHTT-EEEEE
T ss_pred EeeeeechhhcCCCHHHHHHHHHH----HHHHhCCCCCEEEEecCcCCHHHHHHHHHcCCEEeeE
Confidence 888999999999999999999999 666654 44442211 1112334577899998754
No 121
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.62 E-value=6.4e-08 Score=100.62 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=61.0
Q ss_pred eEEEEEECCeEEEEEEEeeeccCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccceecccccccc
Q 007903 489 SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRGRTHSYYR 568 (585)
Q Consensus 489 ~~~Va~~dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~~~a~~YYr 568 (585)
.+++.++++++||++.+.. .+|..++|+|+|||+|+|++||++++ +++++.|+...-+........+|++
T Consensus 7 ~~~v~~~~~~iVG~~~l~~------~~I~~vaV~p~~Rg~GiG~~Ll~~l~----~~a~~~g~~~i~L~t~~~~~~fYek 76 (297)
T cd02169 7 TVGIFDDAGELIATGSIAG------NVLKCVAVCPKYQGEGLALKIVSELI----NKAYEEGIFHLFLFTKPKNAKFFRG 76 (297)
T ss_pred EEEEEEECCEEEEEEEecc------CEEEEEEECHHHcCCCHHHHHHHHHH----HHHHHCCCCEEEEEEcccHHHHHHH
Confidence 4667778899999998862 36899999999999999999999999 9999999886433322223345558
Q ss_pred cCeeecC
Q 007903 569 LKFNCSS 575 (585)
Q Consensus 569 lGF~~~~ 575 (585)
+||+..+
T Consensus 77 ~GF~~~~ 83 (297)
T cd02169 77 LGFKELA 83 (297)
T ss_pred CCCEEec
Confidence 9999776
No 122
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=98.57 E-value=3.8e-07 Score=84.89 Aligned_cols=87 Identities=21% Similarity=0.203 Sum_probs=63.4
Q ss_pred EEEEEECCe-EEEEEEEeeecc--CCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccc--eecccc
Q 007903 490 FYVVEREGQ-IIACAALFPFFK--EKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPF--LRGRTH 564 (585)
Q Consensus 490 ~~Va~~dg~-IVG~~~l~~~~~--~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~--~~~~a~ 564 (585)
++++.+++. .||++.+..... ...++|..++|+++|||+|||++|.+.++ +.++..|+.+..+.. .+..+.
T Consensus 58 ~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aI----d~m~~~g~~eVvLeTe~~n~~A~ 133 (165)
T KOG3139|consen 58 CFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAI----DAMRSRGYSEVVLETEVTNLSAL 133 (165)
T ss_pred EEEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHH----HHHHHCCCcEEEEeccccchHHH
Confidence 344444333 599988863221 24699999999999999999999999999 999999999864332 233444
Q ss_pred c-ccccCeeecCccccc
Q 007903 565 S-YYRLKFNCSSKSFHI 580 (585)
Q Consensus 565 ~-YYrlGF~~~~~~~~~ 580 (585)
. |.++||......|+=
T Consensus 134 ~LY~sLGF~r~~r~~~Y 150 (165)
T KOG3139|consen 134 RLYESLGFKRDKRLFRY 150 (165)
T ss_pred HHHHhcCceEecceeEE
Confidence 4 557999987766653
No 123
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.48 E-value=1e-06 Score=91.02 Aligned_cols=124 Identities=15% Similarity=0.151 Sum_probs=80.8
Q ss_pred cccccccc-cCHHHHHHHHHHHHHccc-cccCCHHHHHhcc-------CeEEEEEE--CCeEEEEEEEeeec-cCCceEE
Q 007903 449 EGTRTAKV-TDLSGIKQIIQPLVESGA-LVRRTDEELLKAL-------DSFYVVER--EGQIIACAALFPFF-KEKCGEV 516 (585)
Q Consensus 449 ~~IR~at~-~D~~~I~~Li~~~~~~~~-~~~~~~e~l~~~i-------~~~~Va~~--dg~IVG~~~l~~~~-~~~~aeI 516 (585)
.++|+++. .|.+.+.++.+....... ...|+.+.+.... ..++++.. ++++|||+.+.... ....++|
T Consensus 150 ~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~vG~~~~~~~~~~~~~~~i 229 (292)
T TIGR03448 150 VTVRAYVGAPDDAEWLRVNNAAFAWHPEQGGWTRADLAERRAEPWFDPAGLFLAFDDAPGELLGFHWTKVHPDEPALGEV 229 (292)
T ss_pred eEeeccCCCcchHHHHHHHHHHhhCCCccCCcCHHHHHHHhhCcCCCcCceEEEEECCCCcEEEEEEEEecCCCCceeEE
Confidence 46788754 588888777544332221 1245555544321 33566666 68999997655322 2235678
Q ss_pred eeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCcccee--cccc-cccccCeeecCc
Q 007903 517 AAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLR--GRTH-SYYRLKFNCSSK 576 (585)
Q Consensus 517 ~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~--~~a~-~YYrlGF~~~~~ 576 (585)
..++|+|+|||+|+|++|+++++ +++++.++....+.... ..+. .|.++||+..+.
T Consensus 230 ~~~~V~p~~rg~GiG~~ll~~~~----~~~~~~g~~~v~l~v~~~N~~a~~~y~k~GF~~~~~ 288 (292)
T TIGR03448 230 YVVGVDPAAQGRGLGDALTLIGL----HHLAARGLPAVMLYVEADNEAAVRTYEKLGFTVAEV 288 (292)
T ss_pred EEEEECHHHcCCCHHHHHHHHHH----HHHHHCCCCEEEEEEeCCCHHHHHHHHHcCCEEccc
Confidence 88899999999999999999999 88888887764433222 2333 455799997654
No 124
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.45 E-value=6.9e-07 Score=94.35 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=64.4
Q ss_pred hccCeEEEEEECCeEEEEEEEeeeccCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccceecccc
Q 007903 485 KALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRGRTH 564 (585)
Q Consensus 485 ~~i~~~~Va~~dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~~~a~ 564 (585)
...+.++++++++++|||+.+.. ..|.+++|+|+|||+|+|++||++++ +.++++|+...-.........
T Consensus 28 ~~~d~~vv~~~~~~lVg~g~l~g------~~ik~vaV~~~~rG~Glg~~L~~~L~----~~a~~~G~~~l~l~Tk~~~~~ 97 (332)
T TIGR00124 28 APLEIFIAVYEDEEIIGCGGIAG------NVIKCVAIDESLRGEGLALQLMTELE----NLAYELGRFHLFIFTKPEYAA 97 (332)
T ss_pred CCCCEEEEEEECCEEEEEEEEec------CEEEEEEEcHHHcCCCHHHHHHHHHH----HHHHHcCCCEEEEEECchHHH
Confidence 34467888889999999999862 24889999999999999999999999 999999987653332222344
Q ss_pred cccccCeeecCc
Q 007903 565 SYYRLKFNCSSK 576 (585)
Q Consensus 565 ~YYrlGF~~~~~ 576 (585)
.|.++||.....
T Consensus 98 fy~klGF~~i~~ 109 (332)
T TIGR00124 98 LFEYCGFKTLAE 109 (332)
T ss_pred HHHHcCCEEeee
Confidence 566899998753
No 125
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=98.41 E-value=3.6e-07 Score=87.97 Aligned_cols=123 Identities=19% Similarity=0.181 Sum_probs=79.5
Q ss_pred cccccccccCHHHHHHHHHHHHHccccccC---CHHH----HHhcc----CeEEEEEECCeEEEEEEEeeec-cCCceEE
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRR---TDEE----LLKAL----DSFYVVEREGQIIACAALFPFF-KEKCGEV 516 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~~~~~~~---~~e~----l~~~i----~~~~Va~~dg~IVG~~~l~~~~-~~~~aeI 516 (585)
..+|+++++|++.+.++........+...+ .... +...+ ...|++..+|++||++.+.... ....+++
T Consensus 7 l~lR~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~iG~~~~~~~~~~~~~~~~ 86 (186)
T PRK15130 7 VKLRPLEREDLRFVHQLDNNASVMRYWFEEPYEAFVELSDLYDKHIHDQSERRFVVECDGEKAGLVELVEINHVHRRAEF 86 (186)
T ss_pred eEEecCCHHHHHHHHHHhcChHHHhhcCCcccccHHHHHHHHHHhhhcccCcEEEEEECCEEEEEEEEEeecCCCCeEEE
Confidence 569999999999999986543211111111 1111 11111 3467778899999999886432 2345666
Q ss_pred eeEEEccCCcCCcHHHHHHHHHHhhhHHHHH-HcCCcccCccce--eccc-ccccccCeeecCc
Q 007903 517 AAIGVSPECRGQGQGDKLLGLCIWPLLSETR-YDHISTNGFPFL--RGRT-HSYYRLKFNCSSK 576 (585)
Q Consensus 517 ~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~-~~gi~~~g~~~~--~~~a-~~YYrlGF~~~~~ 576 (585)
.++|+|+|||+|+|+++++.++ +++. ..++........ +.++ ..|+++||+..+.
T Consensus 87 -~~~v~~~~~g~G~g~~l~~~l~----~~~~~~~~~~rv~~~v~~~N~~s~~~yek~GF~~~~~ 145 (186)
T PRK15130 87 -QIIISPEYQGKGLATRAAKLAM----DYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFEVEGE 145 (186)
T ss_pred -EEEECHHHcCCCHHHHHHHHHH----HHHhhcCCceEEEEEEccCCHHHHHHHHHCCCEEEEE
Confidence 5999999999999999999999 7665 457765432221 2233 3455899987644
No 126
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=98.38 E-value=1.6e-06 Score=80.43 Aligned_cols=120 Identities=16% Similarity=0.132 Sum_probs=79.7
Q ss_pred ccccccccCHHHHHHHHHHHHHcccc---ccCCHHHHHh---cc-----CeEEEEEECCeEEEEEEEeeecc-CCceEEe
Q 007903 450 GTRTAKVTDLSGIKQIIQPLVESGAL---VRRTDEELLK---AL-----DSFYVVEREGQIIACAALFPFFK-EKCGEVA 517 (585)
Q Consensus 450 ~IR~at~~D~~~I~~Li~~~~~~~~~---~~~~~e~l~~---~i-----~~~~Va~~dg~IVG~~~l~~~~~-~~~aeI~ 517 (585)
.+|+++++|++.+.++........++ ...+.+.... .. ..++++..+|++||++.+..... ...+++.
T Consensus 2 ~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vG~~~~~~~~~~~~~~~~g 81 (156)
T TIGR03585 2 NFTPLNSEELELVLEWRNHPDVRANMYSDHLIDWEEHLHFIEALKQDPNRRYWIVCQESRPIGVISFTDINLVHKSAFWG 81 (156)
T ss_pred CcccCCHHHHHHHHHhhCCHHHHhhccCcCCCCHHHHHHHHHHhhcCCCceEEEEEECCEEEEEEEEEecChhhCeEEEE
Confidence 58999999999999987543322221 1123222211 11 35778888999999999974332 3455664
Q ss_pred eEEEccCCcCCcHHHHHHHHHHhhhHHHHHH-cCCcccCccce--e-cccccccccCeeecC
Q 007903 518 AIGVSPECRGQGQGDKLLGLCIWPLLSETRY-DHISTNGFPFL--R-GRTHSYYRLKFNCSS 575 (585)
Q Consensus 518 ~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~-~gi~~~g~~~~--~-~~a~~YYrlGF~~~~ 575 (585)
+++.|++| +|+|+++++.++ +++.+ .++........ + ...+.|+++||...+
T Consensus 82 -~~~~~~~~-~G~g~~~~~~~~----~~a~~~~~~~~i~~~v~~~N~~s~~~y~k~Gf~~~g 137 (156)
T TIGR03585 82 -IYANPFCK-PGVGSVLEEAAL----EYAFEHLGLHKLSLEVLEFNNKALKLYEKFGFEREG 137 (156)
T ss_pred -EEeChhhh-cCchHHHHHHHH----HHHHhhCCeeEEEEEEeccCHHHHHHHHHcCCeEee
Confidence 66999999 999999999999 77764 57766432211 2 233456689999875
No 127
>PRK09181 aspartate kinase; Validated
Probab=98.30 E-value=2.3e-05 Score=86.67 Aligned_cols=79 Identities=18% Similarity=0.111 Sum_probs=66.0
Q ss_pred HHHHHHHHc----CCCeEEEcCCccCCCCceeee---ChHHHHHHHHHHcCCCEEEEeeccccc---C------CCCccc
Q 007903 241 VTRMRERLD----GGCLVILSNLGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D------ESGHLI 304 (585)
Q Consensus 241 ~~~I~~lL~----~G~IPVi~~v~~~~~G~~~ni---d~D~lAa~lA~~L~AdkLIilTDV~gl---~------~~~~lI 304 (585)
.+.|++.++ .+.|||+++.+.+.+|++..+ .+|..|+.||.+|+||.+.+.|||+ + | +++++|
T Consensus 182 ~~~i~~~l~~~~~~~~v~Vv~GF~~~~~G~itTLGRGGSDyTAailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i 260 (475)
T PRK09181 182 DERIKKAFKDIDVTKELPIVTGYAKCKEGLMRTFDRGYSEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPI 260 (475)
T ss_pred HHHHHHHHhhhccCCcEEEecCCcCCCCCCEEecCCChHHHHHHHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEc
Confidence 456666655 588999999865667888766 7899999999999999999999997 5 3 468899
Q ss_pred ccccHHHHHHHHHhhc
Q 007903 305 RFLTLQEADSLIRQRV 320 (585)
Q Consensus 305 ~~it~~e~~~li~~~~ 320 (585)
++|+.+|+.+|..-|+
T Consensus 261 ~~lsy~Ea~ELA~~GA 276 (475)
T PRK09181 261 GRTNYDVADQLANLGM 276 (475)
T ss_pred CccCHHHHHHHHHcCc
Confidence 9999999999987666
No 128
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=98.26 E-value=5.6e-06 Score=79.13 Aligned_cols=123 Identities=11% Similarity=0.095 Sum_probs=80.2
Q ss_pred cccccccccCHHHHHHHHHHHH--Hccc---c-ccCCHHHHHhcc-----------CeEEEEEECCeEEEEEEEeeec-c
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLV--ESGA---L-VRRTDEELLKAL-----------DSFYVVEREGQIIACAALFPFF-K 510 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~--~~~~---~-~~~~~e~l~~~i-----------~~~~Va~~dg~IVG~~~l~~~~-~ 510 (585)
..+|+.+++|++.+.+++.... .... . .+.+.++..+.+ ..++++..++++||++.+.... .
T Consensus 11 l~Lr~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~~~ 90 (179)
T PRK10151 11 LELHAVDESHVTPLHQLVCKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVLSFNRIEPL 90 (179)
T ss_pred EEEEeCCHHHHHHHHHHHHHhHHHHHhcCCCcCccCCHHHHHHHHHHHHHHHhcCCcEEEEEEECCEEEEEEEEEeeccC
Confidence 5799999999999999974211 1111 1 112333333222 1357777799999999886432 2
Q ss_pred CCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHH-cCCcccCccc---eecccccccccCeeecCc
Q 007903 511 EKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRY-DHISTNGFPF---LRGRTHSYYRLKFNCSSK 576 (585)
Q Consensus 511 ~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~-~gi~~~g~~~---~~~~a~~YYrlGF~~~~~ 576 (585)
...++|. ++++|+|||+|+|++++..++ +++.+ .++.+..... .......|.|+||+..+.
T Consensus 91 ~~~~~ig-~~i~~~~~g~G~~tea~~~l~----~~~~~~~~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~ 155 (179)
T PRK10151 91 NKTAYIG-YWLDESHQGQGIISQALQALI----HHYAQSGELRRFVIKCRVDNPASNQVALRNGFTLEGC 155 (179)
T ss_pred CCceEEE-EEEChhhcCCcHHHHHHHHHH----HHHHhhCCccEEEEEEcCCCHHHHHHHHHCCCEEEeE
Confidence 3567874 689999999999999999999 76654 4666532211 122334566899997644
No 129
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=98.21 E-value=5.1e-05 Score=78.70 Aligned_cols=78 Identities=18% Similarity=0.135 Sum_probs=63.6
Q ss_pred HHHHHHHc----CCCeEEEcCCccCCCCceeee---ChHHHHHHHHHHcCCCEEEEeeccccc---C------CCCcccc
Q 007903 242 TRMRERLD----GGCLVILSNLGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D------ESGHLIR 305 (585)
Q Consensus 242 ~~I~~lL~----~G~IPVi~~v~~~~~G~~~ni---d~D~lAa~lA~~L~AdkLIilTDV~gl---~------~~~~lI~ 305 (585)
+.|.+.++ .+.|||+++.+.+.+|++..+ -+|..|+.||.+|+|+.+.+.|||+ + | +++++|+
T Consensus 177 ~~i~~~~~~~~~~~~v~IvtGF~~~~~G~itTLGRGGSDyTAs~iAa~l~A~ev~I~TDV~-i~taDPriV~~~~A~~i~ 255 (304)
T cd04248 177 ERISEAFRDIDPRDELPIVTGYAKCAEGLMREFDRGYSEMTFSRIAVLTGASEAIIHKEFH-LSSADPKLVGEDKARPIG 255 (304)
T ss_pred HHHHHHHHhhccCCcEEEeCCccCCCCCCEEEcCCCcHHHHHHHHHHHcCCCEEEEECCCc-eecCCCCccCCCCceEeC
Confidence 44444444 578999999876678887765 7899999999999999999999996 5 3 3578999
Q ss_pred cccHHHHHHHHHhhc
Q 007903 306 FLTLQEADSLIRQRV 320 (585)
Q Consensus 306 ~it~~e~~~li~~~~ 320 (585)
+++.+|+.+|..-|+
T Consensus 256 ~lsY~EA~ELA~~Ga 270 (304)
T cd04248 256 RTNYDVADQLANLGM 270 (304)
T ss_pred ccCHHHHHHHHHcCh
Confidence 999999999976555
No 130
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=98.20 E-value=6.5e-06 Score=74.75 Aligned_cols=118 Identities=18% Similarity=0.208 Sum_probs=75.8
Q ss_pred ccccccccCHHHHHHHHHHHHHccc---ccc-CCHHHHHhcc--------C---eEEEEEE-C-CeEEEEEEEeee-ccC
Q 007903 450 GTRTAKVTDLSGIKQIIQPLVESGA---LVR-RTDEELLKAL--------D---SFYVVER-E-GQIIACAALFPF-FKE 511 (585)
Q Consensus 450 ~IR~at~~D~~~I~~Li~~~~~~~~---~~~-~~~e~l~~~i--------~---~~~Va~~-d-g~IVG~~~l~~~-~~~ 511 (585)
.||+++++|++.+.++........+ ..+ .+.+...+.+ . .+|++.. + +++||++.+... ...
T Consensus 3 ~lr~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~~~~~~~~~ 82 (142)
T PF13302_consen 3 TLRPLTPEDADAIYEWRSDPEIRRYLPWGPPWPTLEEAEEWIQSRQDSWENHGYYYFAIEDKDDGEIIGFIGLYNIDKNN 82 (142)
T ss_dssp EEEE-HGGGHHHHHHHHTTTTHCTTSSTTTSSSSHHHHHHHHHHHHHCHHEETEEEEEEEETTTTEEEEEEEEEEEETTT
T ss_pred EEEcCCHHHHHHHHHHhcCHHHHHhcCCCCCCCCHHHHHHHHHHhhhhhhcccceEEEEEeccCCceEEEeeeeecccCC
Confidence 5899999999999999742221111 111 2433322211 1 2344444 3 479999999422 246
Q ss_pred CceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHH-HHcCCcccCccce---ecccccccccCee
Q 007903 512 KCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSET-RYDHISTNGFPFL---RGRTHSYYRLKFN 572 (585)
Q Consensus 512 ~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A-~~~gi~~~g~~~~---~~~a~~YYrlGF~ 572 (585)
..+++. +.|.|+|||+|+|+.++..++ +++ +..++........ ....+.+.+.||+
T Consensus 83 ~~~eig-~~i~~~~~g~G~~~~~~~~~~----~~~~~~~~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 83 NWAEIG-YWIGPDYRGKGYGTEALKLLL----DWAFEELGLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp TEEEEE-EEEEGGGTTSSHHHHHHHHHH----HHHHHTSTSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred Cccccc-cchhHHHHhhhHHHHHHHHHH----HHHHhcCCcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 788886 899999999999999999999 887 5778876433222 2344457789985
No 131
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.15 E-value=9.4e-06 Score=61.70 Aligned_cols=59 Identities=31% Similarity=0.423 Sum_probs=48.7
Q ss_pred EEEEECCeEEEEEEEeeecc-CCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcc
Q 007903 491 YVVEREGQIIACAALFPFFK-EKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHIST 553 (585)
Q Consensus 491 ~Va~~dg~IVG~~~l~~~~~-~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~ 553 (585)
+++..+++++|++.+.+... ++..++..++|+|+|||+|+|++|++.++ +++.+.++..
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~----~~~~~~~~~~ 61 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAE----EEARERGAKR 61 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHH----HHHHHcCCcE
Confidence 45667899999999885321 46889999999999999999999999999 7777766543
No 132
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=98.11 E-value=5e-06 Score=76.13 Aligned_cols=88 Identities=19% Similarity=0.343 Sum_probs=63.7
Q ss_pred ccCeEEEEEECCeEEEEEEEeeecc-CCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccceeccc-
Q 007903 486 ALDSFYVVEREGQIIACAALFPFFK-EKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRGRT- 563 (585)
Q Consensus 486 ~i~~~~Va~~dg~IVG~~~l~~~~~-~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~~~a- 563 (585)
...++++...||++++|+.+.+... .....|.++.|+|++||+|+|++||+.++ +.+.+.+-.+. + .+...+
T Consensus 48 ~~~Hl~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL----~~~~~~~p~~~-v-~l~AQah 121 (155)
T COG2153 48 DTRHLLGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKAL----ETAGREWPDKP-V-YLGAQAH 121 (155)
T ss_pred ccceEEEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHH----HHHHhhCCCCC-e-EEehHHH
Confidence 3366777777999999999985321 12356999999999999999999999999 77777664321 1 122333
Q ss_pred -cccc-ccCeeecCcccc
Q 007903 564 -HSYY-RLKFNCSSKSFH 579 (585)
Q Consensus 564 -~~YY-rlGF~~~~~~~~ 579 (585)
..|| ++||...+..|.
T Consensus 122 Lq~fYa~~GFv~~~e~yl 139 (155)
T COG2153 122 LQDFYASFGFVRVGEEYL 139 (155)
T ss_pred HHHHHHHhCcEEcCchhh
Confidence 3466 699998877654
No 133
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=98.04 E-value=2.3e-05 Score=75.93 Aligned_cols=122 Identities=13% Similarity=0.062 Sum_probs=77.0
Q ss_pred cccccccccCHHHHHHHHHHHHH--ccccccC-----CHHH-------HHhcc----CeEEEEE--ECCeEEEEEEEeee
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVE--SGALVRR-----TDEE-------LLKAL----DSFYVVE--REGQIIACAALFPF 508 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~--~~~~~~~-----~~e~-------l~~~i----~~~~Va~--~dg~IVG~~~l~~~ 508 (585)
..||+++++|++.+.+++..... ..+.... ..+. +.... ...|++. .++++||++.+...
T Consensus 18 l~LR~~~~~Da~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~l~~~ 97 (194)
T PRK10809 18 LVVRLVHERDAWRLADYYAENRHFLKPWEPVRDESHCYPSGWQARLGMINEFHKQGSAFYFALLDPDEKEIIGVANFSNV 97 (194)
T ss_pred EEEEeCCHHHHHHHHHHHHhCHHhccCCCCCCcccccCHHHHHHHHHHHHHHHhcCcEEEEEEEECCCCeEEEEEEEEee
Confidence 57999999999999999764211 1111000 0111 11111 2234443 36799999998743
Q ss_pred ccC--CceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHH-cCCcccCccc---eecccccccccCeeecC
Q 007903 509 FKE--KCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRY-DHISTNGFPF---LRGRTHSYYRLKFNCSS 575 (585)
Q Consensus 509 ~~~--~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~-~gi~~~g~~~---~~~~a~~YYrlGF~~~~ 575 (585)
... ..++| .+.|.|+|||+|+|+++++.++ +++.+ +++....... .....+.|.|+||+..+
T Consensus 98 ~~~~~~~~ei-g~~i~~~~~G~G~~~ea~~~ll----~~~~~~l~l~~i~~~v~~~N~~S~~l~ek~Gf~~~g 165 (194)
T PRK10809 98 VRGSFHACYL-GYSLGQKWQGQGLMFEALQAAI----RYMQRQQHMHRIMANYMPHNKRSGDLLARLGFEKEG 165 (194)
T ss_pred cCCCeeeEEE-EEEECHHHcCCCHHHHHHHHHH----HHHHhcCCceEEEEEeeCCCHHHHHHHHHCCCcEEe
Confidence 221 23455 4789999999999999999999 88765 5887643222 22344457789998654
No 134
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=98.01 E-value=8.7e-06 Score=75.43 Aligned_cols=89 Identities=18% Similarity=0.137 Sum_probs=60.0
Q ss_pred cccccccccCHHHHHHHHHHHHHccccccCCHHHHHhcc----CeEEEEE-ECCeEEEEEEEeeec----cCCceEEeeE
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVE-REGQIIACAALFPFF----KEKCGEVAAI 519 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~~~~~~~~~e~l~~~i----~~~~Va~-~dg~IVG~~~l~~~~----~~~~aeI~~L 519 (585)
+.||.++++|+-.+.... -...........+.... ..-||++ .+|+||||+...... ++..++|.++
T Consensus 2 m~iR~ar~~DL~~mQ~~N----l~~lpENyqmkyylyh~lswp~lSyVA~D~~gkiVGYvlAkmee~p~~~~~hGhItSl 77 (193)
T KOG3235|consen 2 MNIRRARPDDLLEMQHCN----LLNLPENYQMKYYLYHGLSWPQLSYVAEDENGKIVGYVLAKMEEDPDDEPPHGHITSL 77 (193)
T ss_pred cccccCCHHHHHHhhhcc----cccCcHHHhHHHHHHhhcccccceEEEEcCCCcEEEEeeeehhhcccCCCCCCeeEEe
Confidence 468999999987776541 00000000011111111 4567887 679999999876433 3457899999
Q ss_pred EEccCCcCCcHHHHHHHHHHhh
Q 007903 520 GVSPECRGQGQGDKLLGLCIWP 541 (585)
Q Consensus 520 ~V~PeyRGkGIGk~LL~~~~~~ 541 (585)
+|...||+.|+|++||+.+.+.
T Consensus 78 aV~rs~RrlGla~kLm~qa~rA 99 (193)
T KOG3235|consen 78 AVKRSYRRLGLAQKLMNQASRA 99 (193)
T ss_pred eehhhHHHhhHHHHHHHHHHHH
Confidence 9999999999999999998743
No 135
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=97.91 E-value=1.3e-05 Score=80.60 Aligned_cols=79 Identities=19% Similarity=0.206 Sum_probs=60.7
Q ss_pred EEECCeEEEEEEEeeeccCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCcccee--cccccccccC
Q 007903 493 VEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLR--GRTHSYYRLK 570 (585)
Q Consensus 493 a~~dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~--~~a~~YYrlG 570 (585)
.+.||+||..+... ...+.++.|..+|++|+|||+|+|..|+..+. +.....|....-|...+ .+.+.|.++|
T Consensus 182 ~~~d~~iVa~A~t~-a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~----~~lL~eGk~~~L~~~~~N~~A~~iY~riG 256 (268)
T COG3393 182 LEGDGKIVAKAETA-AENPAYAQINGVYTHPEYRGKGYATALVATLA----AKLLAEGKIPCLFVNSDNPVARRIYQRIG 256 (268)
T ss_pred EccCCcEEEeeecc-ccCCcceEEEEEEcCHHHccccHHHHHHHHHH----HHHHhCCCeeEEEEecCCHHHHHHHHHhC
Confidence 34556999999887 34578999999999999999999999999999 65556666654443222 3455688999
Q ss_pred eeecCc
Q 007903 571 FNCSSK 576 (585)
Q Consensus 571 F~~~~~ 576 (585)
|+..+.
T Consensus 257 F~~~g~ 262 (268)
T COG3393 257 FREIGE 262 (268)
T ss_pred Ceecce
Confidence 998763
No 136
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=97.80 E-value=7.1e-05 Score=71.61 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=75.0
Q ss_pred cCHHHHHHHHHHHHHccc---cccCCH----HHHHhccCeEEEEEECC-eEEEEEEEeeecc--CCceEEeeEEEccCCc
Q 007903 457 TDLSGIKQIIQPLVESGA---LVRRTD----EELLKALDSFYVVEREG-QIIACAALFPFFK--EKCGEVAAIGVSPECR 526 (585)
Q Consensus 457 ~D~~~I~~Li~~~~~~~~---~~~~~~----e~l~~~i~~~~Va~~dg-~IVG~~~l~~~~~--~~~aeI~~L~V~PeyR 526 (585)
+|++-...|+..-....+ ..-|.+ +++...-..|+++.+++ ++|||.++....+ ....++..+-|.+.||
T Consensus 54 ~~ldw~f~L~k~nm~~~Y~qs~~Gw~~~~K~~El~~~~~~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR 133 (202)
T KOG2488|consen 54 EDLDWCFSLFKKNMGAMYRQSSWGWDDNSKAKELRNRKLRYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYR 133 (202)
T ss_pred HHHHHHHHHHHhhhHHHhhhcccccCchhHHHHHhhccceEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhh
Confidence 677777777644211111 111322 33444446778887776 8999999885433 2367888899999999
Q ss_pred CCcHHHHHHHHHHhhhHHHHHHcCCcccCccce--eccccccc-ccCeeecCc
Q 007903 527 GQGQGDKLLGLCIWPLLSETRYDHISTNGFPFL--RGRTHSYY-RLKFNCSSK 576 (585)
Q Consensus 527 GkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~--~~~a~~YY-rlGF~~~~~ 576 (585)
|+|||+.||+.++ ..+...+....-+... +.++..|| ++||.....
T Consensus 134 ~kGiGk~LL~~l~----~~a~~~~~~kVmLTVf~~N~~al~Fy~~~gf~~~~~ 182 (202)
T KOG2488|consen 134 GKGIGKFLLDTLE----KLADSRHMRKVMLTVFSENIRALGFYHRLGFVVDEE 182 (202)
T ss_pred ccChHHHHHHHHH----HHHHHHHhhhheeeeecccchhHHHHHHcCcccCCC
Confidence 9999999999999 6666555554322222 23445566 699987643
No 137
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=97.79 E-value=8.7e-05 Score=69.81 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=59.2
Q ss_pred EEEECCeEEEEEEEeeecc-CCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccceecccccccccC
Q 007903 492 VVEREGQIIACAALFPFFK-EKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRGRTHSYYRLK 570 (585)
Q Consensus 492 Va~~dg~IVG~~~l~~~~~-~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~~~a~~YYrlG 570 (585)
.-+...++||...+.+..+ ++..++..+.|+.+.||+|+|+.||+.++ .+++..|+.+.-+.. ...-++|.++|
T Consensus 61 l~E~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E----~~~R~~gf~~~yLsT-~DQ~~FYe~lG 135 (225)
T KOG3397|consen 61 LNEENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTE----KWMREKGFNEAYLST-DDQCRFYESLG 135 (225)
T ss_pred ecccccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHH----HHHHHhhhhheeeec-ccchhhhhhhc
Confidence 3355678999999986543 56789999999999999999999999999 999999987642221 12344555799
Q ss_pred eee
Q 007903 571 FNC 573 (585)
Q Consensus 571 F~~ 573 (585)
|+.
T Consensus 136 Ye~ 138 (225)
T KOG3397|consen 136 YEK 138 (225)
T ss_pred ccc
Confidence 984
No 138
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=97.77 E-value=5.2e-05 Score=84.67 Aligned_cols=81 Identities=15% Similarity=0.082 Sum_probs=60.9
Q ss_pred CCeEEEEEEEeeecc-------CCceEEeeEEEc-----------cCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCcc
Q 007903 496 EGQIIACAALFPFFK-------EKCGEVAAIGVS-----------PECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFP 557 (585)
Q Consensus 496 dg~IVG~~~l~~~~~-------~~~aeI~~L~V~-----------PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~ 557 (585)
++.++||+.+..... ...+.|..|.|. |+|||+|+|++||++++ +.|++.|+......
T Consensus 422 ~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae----~~Ar~~G~~~i~v~ 497 (522)
T TIGR01211 422 NDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAE----RIAAEEGSEKILVI 497 (522)
T ss_pred CCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHH----HHHHHCCCCEEEEe
Confidence 568999999874221 235677777754 99999999999999999 99999999876543
Q ss_pred ceeccccccc-ccCeeecCcccccc
Q 007903 558 FLRGRTHSYY-RLKFNCSSKSFHIS 581 (585)
Q Consensus 558 ~~~~~a~~YY-rlGF~~~~~~~~~~ 581 (585)
. ...++.|| ++||...+.-|..+
T Consensus 498 s-~~~A~~FY~klGf~~~g~ym~K~ 521 (522)
T TIGR01211 498 S-GIGVREYYRKLGYELDGPYMSKR 521 (522)
T ss_pred e-CchHHHHHHHCCCEEEcceeEEe
Confidence 3 23455566 79999987766543
No 139
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=97.75 E-value=5.9e-05 Score=64.04 Aligned_cols=61 Identities=20% Similarity=0.196 Sum_probs=44.4
Q ss_pred ceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCcccee--cccccccccCeeecCcc
Q 007903 513 CGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLR--GRTHSYYRLKFNCSSKS 577 (585)
Q Consensus 513 ~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~--~~a~~YYrlGF~~~~~~ 577 (585)
.++|..++++|+|||+|+|+.|+..+. +...+.|.....+.... .+...|.++||+.....
T Consensus 21 ~g~i~~v~t~p~~RrrGlg~~lv~~l~----~~~~~~g~~~~l~v~~~N~~s~~ly~klGf~~~~~~ 83 (86)
T PF08445_consen 21 DGEIGGVYTLPEHRRRGLGSALVAALA----RELLERGKTPFLYVDADNEASIRLYEKLGFREIEEE 83 (86)
T ss_dssp TCCEEEEEE-GGGTTSSHHHHHHHHHH----HHHHHTTSEEEEEEETT-HHHHHHHHHCT-EEEEEE
T ss_pred CcEEEEEEECHHHcCCCHHHHHHHHHH----HHHHhCCCcEEEEEECCCHHHHHHHHHcCCEEEEEE
Confidence 488999999999999999999999999 77777887654332211 23345668999987554
No 140
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=97.71 E-value=0.00017 Score=60.09 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=47.6
Q ss_pred EEEECCeEEEEEEEeeeccCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCccc
Q 007903 492 VVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTN 554 (585)
Q Consensus 492 Va~~dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~ 554 (585)
.+..||+.+|++.... .++...|...+|.|++||||+|++|++.++ ++++++|.+-.
T Consensus 3 ~~~~~g~~~a~l~Y~~--~~~~~~i~hT~V~~~~rGqGia~~L~~~~l----~~a~~~~~kv~ 59 (78)
T PF14542_consen 3 ELKDDGEEIAELTYRE--DGGVIVITHTEVPPELRGQGIAKKLVEAAL----DYARENGLKVV 59 (78)
T ss_dssp EEESSTTEEEEEEEEE--SSSEEEEEEEEE-CSSSTTTHHHHHHHHHH----HHHHHTT-EEE
T ss_pred EEEECCEEEEEEEEEe--CCCEEEEEEEEECccccCCcHHHHHHHHHH----HHHHHCCCEEE
Confidence 3456688999998863 667889999999999999999999999999 99999998754
No 141
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=97.41 E-value=0.00087 Score=70.47 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=55.9
Q ss_pred cCCCeEEEcCC-ccC-CCCcee---eeChHHHHHHHHHHcCCCEEEEeeccccc---C----CCCcccccccHHHHHHHH
Q 007903 249 DGGCLVILSNL-GYS-SSGEVL---NCNTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLI 316 (585)
Q Consensus 249 ~~G~IPVi~~v-~~~-~~G~~~---nid~D~lAa~lA~~L~AdkLIilTDV~gl---~----~~~~lI~~it~~e~~~li 316 (585)
..+.|||+.+. |-. +.|-+. ..-+|..|+.||.+|++|.+-+--||||+ | |.+++++.+|.+|+.+|.
T Consensus 257 ken~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~~~p~Ar~vp~lT~dEAaELa 336 (559)
T KOG0456|consen 257 KENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPRIYPGARLVPYLTFDEAAELA 336 (559)
T ss_pred cCCccceEeeccccCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCccCCCccccCccCHHHHHHHH
Confidence 34789999873 421 233222 33689999999999999999999999997 4 568999999999998886
Q ss_pred Hhhc
Q 007903 317 RQRV 320 (585)
Q Consensus 317 ~~~~ 320 (585)
--|+
T Consensus 337 YfGa 340 (559)
T KOG0456|consen 337 YFGA 340 (559)
T ss_pred hhhh
Confidence 5444
No 142
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=97.38 E-value=0.00045 Score=60.15 Aligned_cols=65 Identities=26% Similarity=0.314 Sum_probs=56.3
Q ss_pred CeEEEEEECCeEEEEEEEeeeccCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCcc
Q 007903 488 DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFP 557 (585)
Q Consensus 488 ~~~~Va~~dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~ 557 (585)
..+|++..+|+.+|.+..++ ..++...|.+-+|.+++||||+|++|+++++ +.|++.|++..-++
T Consensus 15 ~~~y~~~~~G~~~~e~~y~~-~~~~~i~i~HT~V~d~lrGqGia~~L~~~al----~~ar~~g~kiiP~C 79 (99)
T COG2388 15 NGRYVLTDEGEVIGEATYYD-RGENLIIIDHTYVPDELRGQGIAQKLVEKAL----EEAREAGLKIIPLC 79 (99)
T ss_pred ceEEEEecCCcEEEEEEEec-CCCCEEEEecCcCCHHHcCCcHHHHHHHHHH----HHHHHcCCeEcccc
Confidence 56888999999999988773 4557888999999999999999999999999 99999998765443
No 143
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=97.37 E-value=0.0011 Score=62.76 Aligned_cols=62 Identities=24% Similarity=0.444 Sum_probs=50.1
Q ss_pred CeEEEEEECCeEEEEEEEeeecc----CCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCccc
Q 007903 488 DSFYVVEREGQIIACAALFPFFK----EKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTN 554 (585)
Q Consensus 488 ~~~~Va~~dg~IVG~~~l~~~~~----~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~ 554 (585)
..+|....|+++||++.+....+ ..-++|. -.|.|+.||+|+|++|+..++ +.|+++|++..
T Consensus 69 ~~y~~v~~d~~ivG~i~lRh~Ln~~ll~~gGHIG-Y~VrPseR~KGYA~emLkl~L----~~ar~lgi~~V 134 (174)
T COG3981 69 STYWAVDEDGQIVGFINLRHQLNDFLLEEGGHIG-YSVRPSERRKGYAKEMLKLAL----EKARELGIKKV 134 (174)
T ss_pred eeEEEEecCCcEEEEEEeeeecchHHHhcCCccc-ceeChhhhccCHHHHHHHHHH----HHHHHcCCCeE
Confidence 35666667899999999974322 2356674 589999999999999999999 99999999874
No 144
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=97.10 E-value=0.0013 Score=64.42 Aligned_cols=63 Identities=21% Similarity=0.280 Sum_probs=43.6
Q ss_pred CHHHHHhcc----CeEEEEEECC--eEEEEEEEeee------------------------------------ccCCceEE
Q 007903 479 TDEELLKAL----DSFYVVEREG--QIIACAALFPF------------------------------------FKEKCGEV 516 (585)
Q Consensus 479 ~~e~l~~~i----~~~~Va~~dg--~IVG~~~l~~~------------------------------------~~~~~aeI 516 (585)
++.++..-+ ..+|++..++ +++|.+.+..- ..-....|
T Consensus 14 sPnDL~~LlDaP~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RI 93 (196)
T PF13718_consen 14 SPNDLQLLLDAPNHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARI 93 (196)
T ss_dssp -HHHHHHHHH-TTEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEE
T ss_pred CHHHHHHHhcCCcceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeE
Confidence 345544333 5788888888 99999887421 00124579
Q ss_pred eeEEEccCCcCCcHHHHHHHHHHhh
Q 007903 517 AAIGVSPECRGQGQGDKLLGLCIWP 541 (585)
Q Consensus 517 ~~L~V~PeyRGkGIGk~LL~~~~~~ 541 (585)
.+|+|+|++|++|+|++|++.++++
T Consensus 94 vRIAvhP~~q~~G~Gs~lL~~l~~~ 118 (196)
T PF13718_consen 94 VRIAVHPDLQRMGYGSRLLQQLEQY 118 (196)
T ss_dssp EEEEE-CCC-SSSHHHHHHHHHHHT
T ss_pred EEEEEChhhhcCCHHHHHHHHHHHH
Confidence 9999999999999999999999933
No 145
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=97.10 E-value=0.00044 Score=66.96 Aligned_cols=121 Identities=16% Similarity=0.108 Sum_probs=71.5
Q ss_pred cccccccccCHHHHHHHHHHHHHccccccCCHHHHHhcc----CeEEEEEECCeEEEEEEEeeeccC----C-----ceE
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVEREGQIIACAALFPFFKE----K-----CGE 515 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~~~~~~~~~e~l~~~i----~~~~Va~~dg~IVG~~~l~~~~~~----~-----~ae 515 (585)
..+|..++.|+..+..|... .+....... +..+. +..-++..++..+|-..+...... + ..+
T Consensus 17 ~~l~~it~~nl~~~~~l~~~----~fP~~y~~k-fy~~~~~~~~~~~~A~~~~~~v~a~~~k~~~~~~~~~r~~~~~~~y 91 (187)
T KOG3138|consen 17 IELRLITPNNLKQLKQLNED----IFPISYVDK-FYPDVLSNGDLTQLAYYNEIAVGAVACKLIKFVQNAKRLFGNRVIY 91 (187)
T ss_pred eeeccCCcchHHHHHHHhcc----ccCcchHHH-HHHHHHhcCCHHHhhhhccccccceeeeehhhhhhhhhhhccceeE
Confidence 57899999999999998332 222111111 22221 212223334444444444321110 1 378
Q ss_pred EeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcC-CcccCccc---eecccccccccCeeecCccc
Q 007903 516 VAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDH-ISTNGFPF---LRGRTHSYYRLKFNCSSKSF 578 (585)
Q Consensus 516 I~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~g-i~~~g~~~---~~~~a~~YYrlGF~~~~~~~ 578 (585)
|..+.|+|.||.+|||++|++++. +.+.... +....+.. ......+|.+.||++.....
T Consensus 92 i~~Lgvl~~yR~~gIGs~Ll~~~~----~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~~~ 154 (187)
T KOG3138|consen 92 ILSLGVLPRYRNKGIGSKLLEFVK----KYCSEAHQCRRVYLHVQAVNESAIEFYEKRGFEIVERLK 154 (187)
T ss_pred EEeecccHHHHhcchHHHHHHHHH----HHHhcccccceEEEEEEeCCCcHHHHHHhcCceEeeccc
Confidence 999999999999999999999999 7666665 33332221 12333445579999986543
No 146
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=97.00 E-value=0.0017 Score=68.49 Aligned_cols=91 Identities=21% Similarity=0.335 Sum_probs=56.5
Q ss_pred cccccccccCHHHHHHHHHHHHHccccccCCHHHHHhcc------------------CeEEEEEE--CCeEEEEEEEee-
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL------------------DSFYVVER--EGQIIACAALFP- 507 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~~~~~~~~~e~l~~~i------------------~~~~Va~~--dg~IVG~~~l~~- 507 (585)
+.||+++.+|+++|.+|....-.--..+|.+.+.+.+.+ ..+||.++ .|+|+|++.+..
T Consensus 2 ~viRp~~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sFa~~~~~~~~~~~YlfVLED~~tg~vvGts~I~a~ 81 (342)
T PF04958_consen 2 LVIRPARPSDLDALYALARESGPGFTSLPPDREALAERIERSERSFAGRDVDFPGDEGYLFVLEDTETGEVVGTSAIEAA 81 (342)
T ss_dssp EEEEE--GGGHHHHHHHHHHS-TT-TTS-S-HHHHHHHHHHHHHHHH-TT----S--EEEEEEEETTT--EEEEEEEESS
T ss_pred eEEecCchhhHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhhccccCCCCccceEEEEEecCCCcEEEEEeEEec
Confidence 468999999999999994432211123455555544332 24677775 599999998831
Q ss_pred ------e----------------------------ccCCceEEeeEEEccCCcCCcHHHHHHHHHH
Q 007903 508 ------F----------------------------FKEKCGEVAAIGVSPECRGQGQGDKLLGLCI 539 (585)
Q Consensus 508 ------~----------------------------~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~ 539 (585)
+ .-....||..++++|+||+.|.|+.|-..-.
T Consensus 82 vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr~Rf 147 (342)
T PF04958_consen 82 VGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLSRSRF 147 (342)
T ss_dssp TTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHHHHHH
T ss_pred cCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHHHHHH
Confidence 0 0135679999999999999999998866443
No 147
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=96.85 E-value=0.0036 Score=63.81 Aligned_cols=109 Identities=16% Similarity=0.132 Sum_probs=76.2
Q ss_pred cccccccccCHHHHHHHHHHHHHccccccCCHHHHHhccCeEEEEEE-CCeEEEEEEEeeeccCCceEEeeEEEccCCcC
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVER-EGQIIACAALFPFFKEKCGEVAAIGVSPECRG 527 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~~~~~~~~~e~l~~~i~~~~Va~~-dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRG 527 (585)
+.+++..+.|...+..+-.-+.+.+.. ++..++.+.++.. ++++|+|+.+.- .-|.+++|+|.+||
T Consensus 4 ~~~~~v~~~e~~k~~~i~~fL~~~~l~-------~d~~ve~~v~~~~~~~~iiacGsiaG------nvikcvAvs~s~qG 70 (352)
T COG3053 4 YTFSRVKRSEKKKMAEIAEFLHQNDLR-------VDTTVEYFVAIYRDNEEIIACGSIAG------NVIKCVAVSESLQG 70 (352)
T ss_pred eEEEEEccchhhHHHHHHHHHhhcCce-------ecccceEEEEEEcCCCcEEEeccccc------ceeEEEEechhccc
Confidence 456777778888777774444444332 3344455555555 499999998862 24889999999999
Q ss_pred CcHHHHHHHHHHhhhHHHHHHcCCcccCccceecccccccccCeeec
Q 007903 528 QGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRGRTHSYYRLKFNCS 574 (585)
Q Consensus 528 kGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~~~a~~YYrlGF~~~ 574 (585)
-|+.-+|+.+++ +.+-++|....=.......+..|...||...
T Consensus 71 eGl~lkl~TeLi----n~ay~~g~~hLFiyTKp~~~~lFk~~GF~~i 113 (352)
T COG3053 71 EGLALKLVTELI----NLAYERGRTHLFIYTKPEYAALFKQCGFSEI 113 (352)
T ss_pred ccHHHHHHHHHH----HHHHHcCCceEEEEechhHHHHHHhCCceEe
Confidence 999999999999 8888888876422222234445667898765
No 148
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=96.85 E-value=0.0017 Score=60.56 Aligned_cols=90 Identities=22% Similarity=0.139 Sum_probs=60.2
Q ss_pred cccccccccCHHHHHHHHHHHHHccccccCCHHHHHhccCeEEEEEE-CCeEEEEEEEeeecc---CCceEEeeEEEccC
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVER-EGQIIACAALFPFFK---EKCGEVAAIGVSPE 524 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~~~~~~~~~e~l~~~i~~~~Va~~-dg~IVG~~~l~~~~~---~~~aeI~~L~V~Pe 524 (585)
.++|+.+++|+-..-.+.-....+.+..+.-...+...-..+.+++. ++++-|++.-.. .. .-.+++..+.|.|+
T Consensus 2 tt~r~f~~~Dlf~fNninLDpltEt~~~~Fyl~yl~~~pe~~~~a~~p~~~imgyimgk~-Eg~~~~wh~HvTAltVap~ 80 (173)
T KOG3234|consen 2 TTIRPFTPQDLFKFNNINLDPLTETFPISFYLIYLAIWPEDFIVAEAPTGEIMGYIMGKV-EGKDTEWHGHVTALTVAPD 80 (173)
T ss_pred CccccccHHHHHhhccccccccccccceehhHHHHHhChHHhEeccCCCCceEEEEeeec-cccCcceeeEEEEEEechh
Confidence 36888888887766655322233334333333333333345666654 578999988742 21 23578999999999
Q ss_pred CcCCcHHHHHHHHHH
Q 007903 525 CRGQGQGDKLLGLCI 539 (585)
Q Consensus 525 yRGkGIGk~LL~~~~ 539 (585)
||+.|+|+.||+.++
T Consensus 81 ~Rrl~la~~lm~~le 95 (173)
T KOG3234|consen 81 YRRLGLAAKLMDTLE 95 (173)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999999
No 149
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=96.85 E-value=0.0049 Score=55.89 Aligned_cols=76 Identities=17% Similarity=0.221 Sum_probs=51.6
Q ss_pred cccccCHHHHHHHHHHHHHccccccCCHHHHHhcc---CeEEEEEECCeEEEEEEEeeeccCCceEEeeEEEccCCcCCc
Q 007903 453 TAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL---DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQG 529 (585)
Q Consensus 453 ~at~~D~~~I~~Li~~~~~~~~~~~~~~e~l~~~i---~~~~Va~~dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkG 529 (585)
..++.|.-.+..|+ ...+.+.+...+ ..+|++..|++++|-+.+.. ++..++|..|+|.|--|++|
T Consensus 9 ~ls~Qd~iDL~KIw---------p~~~~~~l~~~l~~~~~l~aArFNdRlLgAv~v~~--~~~~~~L~~l~VRevTRrRG 77 (128)
T PF12568_consen 9 TLSEQDRIDLAKIW---------PQQDPEQLEQWLDEGHRLFAARFNDRLLGAVKVTI--SGQQAELSDLCVREVTRRRG 77 (128)
T ss_dssp S--HHHHHHHHHH----------TTS----------SSEEEEEEEETTEEEEEEEEEE--ETTEEEEEEEEE-TT-SSSS
T ss_pred CCCHHHHHHHHHhC---------CCCCHHHHHHHhccCCeEEEEEechheeeeEEEEE--cCcceEEeeEEEeecccccc
Confidence 34556666666663 222344555444 67899999999999999874 46799999999999999999
Q ss_pred HHHHHHHHHH
Q 007903 530 QGDKLLGLCI 539 (585)
Q Consensus 530 IGk~LL~~~~ 539 (585)
+|+.|++.+.
T Consensus 78 VG~yLlee~~ 87 (128)
T PF12568_consen 78 VGLYLLEEVL 87 (128)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999998
No 150
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=96.75 E-value=0.0027 Score=60.87 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=65.6
Q ss_pred hHHHHHhcCCCceeeccccc-ccccccccc-CHHHHHHHHHHHHHccccccCCHHHHHhccCeEEEEEECCeEEEEEEEe
Q 007903 429 LLLELFKRDGMGTMVASDLY-EGTRTAKVT-DLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALF 506 (585)
Q Consensus 429 ll~el~~~~~~GT~i~~d~~-~~IR~at~~-D~~~I~~Li~~~~~~~~~~~~~~e~l~~~i~~~~Va~~dg~IVG~~~l~ 506 (585)
|..|||+..|.||+|.+... ........- |.+.+.+++..........+.-.+.+...+..+++ ++..-|.+.+.
T Consensus 2 L~kELFt~sgagTlirrG~~i~~~~s~~~~~d~~kL~~ll~~sf~~~~~v~~yl~~l~~~~~~iy~---d~~y~~~AIVt 78 (170)
T PF04768_consen 2 LQKELFTDSGAGTLIRRGYKILKHSSLSEFVDLDKLRALLERSFGGKLDVDHYLDRLNNRLFKIYV---DEDYEGAAIVT 78 (170)
T ss_dssp HHHHHHSSSTSSEEEE----EEEESSCCCSS-HHHHHHHHHHHSTSSSBHTTHHHHHHTS-SEEEE---ETTSSEEEEEE
T ss_pred ccchhcCCCCCceEEecCeeeEEecCccccCCHHHHHHHHHhcccccccHHHHHHHhhccceEEEE---eCCceEEEEEE
Confidence 67899999999999987744 333444444 89999998654331111212222333333344444 23333444443
Q ss_pred e---eccCCceEEeeEEEccCCcCCcHHHHHHHHHH
Q 007903 507 P---FFKEKCGEVAAIGVSPECRGQGQGDKLLGLCI 539 (585)
Q Consensus 507 ~---~~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~ 539 (585)
+ ...+..+++..++|.|..||.|++..+++.+.
T Consensus 79 ~e~~~~~~~v~yLdKFav~~~~~g~gv~D~vf~~i~ 114 (170)
T PF04768_consen 79 PEGPDSNGPVPYLDKFAVSKSAQGSGVADNVFNAIR 114 (170)
T ss_dssp EE-SCTCTSEEEEEEEEE-HHHHHTTHHHHHHHHHH
T ss_pred ecCCCCCCCCeEEEEEEecchhhhcCHHHHHHHHHH
Confidence 2 22346899999999999999999999999998
No 151
>PRK10456 arginine succinyltransferase; Provisional
Probab=96.75 E-value=0.0039 Score=65.70 Aligned_cols=89 Identities=17% Similarity=0.224 Sum_probs=61.4
Q ss_pred cccccccccCHHHHHHHHHHHHHccccccCCHHHHHhcc----------------CeEEEEEE--CCeEEEEEEEee---
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----------------DSFYVVER--EGQIIACAALFP--- 507 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~~~~~~~~~e~l~~~i----------------~~~~Va~~--dg~IVG~~~l~~--- 507 (585)
+.||+++.+|+++|.+|....-.--..+|.+.+.+.+.+ ..+||.++ .|+|+|++.+..
T Consensus 2 ~vvRpv~~~Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~vG 81 (344)
T PRK10456 2 MVIRPVERSDLAALMQLAGKTGGGLTSLPANEATLAARIERALKTWQGELPKSEQGYVFVLEDSETGTVAGICAIEVAVG 81 (344)
T ss_pred eEEecCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCcEEEEEeEEeccc
Confidence 468999999999999994322111124455555554433 35677774 589999998731
Q ss_pred ----e----------------------------ccCCceEEeeEEEccCCcCCcHHHHHHHH
Q 007903 508 ----F----------------------------FKEKCGEVAAIGVSPECRGQGQGDKLLGL 537 (585)
Q Consensus 508 ----~----------------------------~~~~~aeI~~L~V~PeyRGkGIGk~LL~~ 537 (585)
+ .-....||+.++++|+||+.|.|+.|-..
T Consensus 82 ~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~~G~LLSr~ 143 (344)
T PRK10456 82 LNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSKS 143 (344)
T ss_pred CCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCCchhHHHHH
Confidence 0 01245689999999999999999877554
No 152
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=96.70 E-value=0.0053 Score=64.57 Aligned_cols=87 Identities=20% Similarity=0.285 Sum_probs=60.1
Q ss_pred cccccccCHHHHHHHHHHHHHccccccCCHHHHHhcc----------------CeEEEEEE--CCeEEEEEEEee-----
Q 007903 451 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----------------DSFYVVER--EGQIIACAALFP----- 507 (585)
Q Consensus 451 IR~at~~D~~~I~~Li~~~~~~~~~~~~~~e~l~~~i----------------~~~~Va~~--dg~IVG~~~l~~----- 507 (585)
||+++.+|+++|.+|....-.--..+|.+.+.+.+.+ ..+||.++ .|+|+|++.+..
T Consensus 2 vRPv~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~vG~~ 81 (336)
T TIGR03244 2 VRPVETSDLDALYQLAQSTGIGLTSLPANEDLLSARIERAEKTFSGELTRAEQGYLFVLEDTETGTVAGVSAIEAAVGLE 81 (336)
T ss_pred cccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCeEEEEEeEEecccCC
Confidence 7999999999999994322111124455555554433 35677775 589999998731
Q ss_pred --e----------------------------ccCCceEEeeEEEccCCcCCcHHHHHHHH
Q 007903 508 --F----------------------------FKEKCGEVAAIGVSPECRGQGQGDKLLGL 537 (585)
Q Consensus 508 --~----------------------------~~~~~aeI~~L~V~PeyRGkGIGk~LL~~ 537 (585)
+ .-....||+.++++|+||+.|.|+.|-..
T Consensus 82 ~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~~G~LLSr~ 141 (336)
T TIGR03244 82 EPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGGNGRLLSKS 141 (336)
T ss_pred CCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCcchhhHHHH
Confidence 0 01245789999999999999999877553
No 153
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=96.64 E-value=0.0051 Score=63.06 Aligned_cols=89 Identities=19% Similarity=0.205 Sum_probs=56.2
Q ss_pred CHHHHHhccCeEEEEEECCeEEEEEEEeeeccCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccc
Q 007903 479 TDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPF 558 (585)
Q Consensus 479 ~~e~l~~~i~~~~Va~~dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~ 558 (585)
+.+++.+. ..-+++..+|+||+-|.... ..++..+| .|.++|+|||||+|+.+-..++ .+|.++|+....=..
T Consensus 157 s~e~Fl~~-G~Gf~i~~~~~iVs~~~s~~-~~~~~~EI-~I~T~~~yR~kGLA~~~aa~~I----~~Cl~~~l~P~WDc~ 229 (265)
T PF12746_consen 157 SYEDFLKN-GFGFCILHDGEIVSGCSSYF-VYENGIEI-DIETHPEYRGKGLATAVAAAFI----LECLENGLYPSWDCH 229 (265)
T ss_dssp SHHHHHHH---EEEEEETTEEEEEEEEEE-EETTEEEE-EEEE-CCCTTSSHHHHHHHHHH----HHHHHTT-EEE-EES
T ss_pred CHHHHHhc-CcEEEEEECCEEEEEEEEEE-EECCEEEE-EEEECHHhhcCCHHHHHHHHHH----HHHHHCCCCcCeeCC
Confidence 44444333 45567778899987666553 33456788 5999999999999999999999 999999987642111
Q ss_pred eecccccccccCeeec
Q 007903 559 LRGRTHSYYRLKFNCS 574 (585)
Q Consensus 559 ~~~~a~~YYrlGF~~~ 574 (585)
.....+.=.++||...
T Consensus 230 N~~S~~lA~kLGf~~~ 245 (265)
T PF12746_consen 230 NLASIALAEKLGFHFD 245 (265)
T ss_dssp SHHHHHHHHHCT--EE
T ss_pred CHHHHHHHHHcCCccc
Confidence 1122223346787765
No 154
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=96.62 E-value=0.0057 Score=64.24 Aligned_cols=87 Identities=15% Similarity=0.259 Sum_probs=59.1
Q ss_pred cccccccCHHHHHHHHHHHHHccccccCCHHHHHhcc-----------------CeEEEEEE--CCeEEEEEEEee----
Q 007903 451 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL-----------------DSFYVVER--EGQIIACAALFP---- 507 (585)
Q Consensus 451 IR~at~~D~~~I~~Li~~~~~~~~~~~~~~e~l~~~i-----------------~~~~Va~~--dg~IVG~~~l~~---- 507 (585)
||+++.+|+++|.+|....-.--..+|.+.+.+.+.+ ..+||.++ .|+|+|++.+..
T Consensus 2 iRpv~~~Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~vG~ 81 (336)
T TIGR03245 2 VRPSRFADLPAIERLANESAIGVTSLPADRAKLGEKIAQSERSFAAEVSFVGEERYLFVLEDTETGKLLGTSSIVASAGY 81 (336)
T ss_pred cccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHHhhcCCCCCccEEEEEEeCCCCcEEEEEeEEecccC
Confidence 7999999999999994321111123455555444332 35677774 589999998732
Q ss_pred ---e----------------------------ccCCceEEeeEEEccCCcCCcHHHHHHHH
Q 007903 508 ---F----------------------------FKEKCGEVAAIGVSPECRGQGQGDKLLGL 537 (585)
Q Consensus 508 ---~----------------------------~~~~~aeI~~L~V~PeyRGkGIGk~LL~~ 537 (585)
+ .-....||+.++++|+||+-|.|+.|-..
T Consensus 82 ~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~lLSr~ 142 (336)
T TIGR03245 82 GEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTEAAELLSRA 142 (336)
T ss_pred CCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhHHHHH
Confidence 0 01245789999999999999999877554
No 155
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=96.53 E-value=0.0072 Score=63.48 Aligned_cols=87 Identities=18% Similarity=0.265 Sum_probs=58.7
Q ss_pred cccccccCHHHHHHHHHHHHHccccccCCHHHHHhcc----------------CeEEEEEE--CCeEEEEEEEee-----
Q 007903 451 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----------------DSFYVVER--EGQIIACAALFP----- 507 (585)
Q Consensus 451 IR~at~~D~~~I~~Li~~~~~~~~~~~~~~e~l~~~i----------------~~~~Va~~--dg~IVG~~~l~~----- 507 (585)
||+++.+|+++|.+|....-.--..+|.+.+.+.+.+ ..+||.++ .|+|+|++.+..
T Consensus 2 vRpv~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~vG~~ 81 (335)
T TIGR03243 2 VRPVRTSDLDALMQLARESGIGLTSLPADRAALGSRIARSEKSFAGESTRGEEGYLFVLEDTETGTVAGVSAIEAAVGLD 81 (335)
T ss_pred cccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEeCCCCeEEEEEeEEecccCC
Confidence 7999999999999994322111123444444443322 35667774 589999998732
Q ss_pred --e----------------------------ccCCceEEeeEEEccCCcCCcHHHHHHHH
Q 007903 508 --F----------------------------FKEKCGEVAAIGVSPECRGQGQGDKLLGL 537 (585)
Q Consensus 508 --~----------------------------~~~~~aeI~~L~V~PeyRGkGIGk~LL~~ 537 (585)
+ .-....||+.++++|+||+.|.|+.|-..
T Consensus 82 ~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~LLSr~ 141 (335)
T TIGR03243 82 EPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGGNGRLLSRS 141 (335)
T ss_pred CCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhhHHHH
Confidence 0 01246789999999999999999877554
No 156
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=96.14 E-value=0.0055 Score=52.20 Aligned_cols=75 Identities=17% Similarity=0.096 Sum_probs=56.2
Q ss_pred EEEECCeEEEEEEEeeeccCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCcccee--ccccccccc
Q 007903 492 VVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLR--GRTHSYYRL 569 (585)
Q Consensus 492 Va~~dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~--~~a~~YYrl 569 (585)
+...+|++|-..... .++++..-|..|+|||||+.+.++.... +...++|+.-.++.... ...+..+.+
T Consensus 3 llgpeG~PVSW~lmd-----qtge~rmgyTlPeyR~~G~~~~v~~~~~----~~L~~~g~P~Y~hv~~~N~~~~r~~~~l 73 (89)
T PF08444_consen 3 LLGPEGNPVSWSLMD-----QTGEMRMGYTLPEYRGQGLMSQVMYHLA----QYLHKLGFPFYGHVDEDNEASQRLSKSL 73 (89)
T ss_pred ccCCCCCEeEEEEec-----ccccccccccCHhHhcCCHHHHHHHHHH----HHHHHCCCCeEeehHhccHHHHHHHHHC
Confidence 345678888887765 3788999999999999999999999999 88888888765443222 233346678
Q ss_pred CeeecC
Q 007903 570 KFNCSS 575 (585)
Q Consensus 570 GF~~~~ 575 (585)
||...+
T Consensus 74 g~~~~p 79 (89)
T PF08444_consen 74 GFIFMP 79 (89)
T ss_pred CCeecC
Confidence 887654
No 157
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=96.12 E-value=0.047 Score=49.12 Aligned_cols=61 Identities=21% Similarity=0.095 Sum_probs=51.5
Q ss_pred eEEEEEECCeEEEEEEEeeeccCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccC
Q 007903 489 SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNG 555 (585)
Q Consensus 489 ~~~Va~~dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g 555 (585)
.++++..+|++||+..... .++..+......+|+|+..+.|..|+.+++ ++|.+.|+....
T Consensus 72 ~l~~~~~~g~~va~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~l~~~~i----~~a~~~g~~~~d 132 (142)
T PF13480_consen 72 RLFVLYDGGEPVAFALGFR--HGGTLYYWYGGYDPEYRKYSPGRLLLWEAI----RWAIERGLRYFD 132 (142)
T ss_pred EEEEEEECCEEEEEEEEEE--ECCEEEEEEEEECHhhHhCCHHHHHHHHHH----HHHHHCCCCEEE
Confidence 5677888999999987663 445777788889999999999999999999 999999987643
No 158
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=96.04 E-value=0.0041 Score=51.19 Aligned_cols=30 Identities=40% Similarity=0.533 Sum_probs=27.6
Q ss_pred EEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCc
Q 007903 519 IGVSPECRGQGQGDKLLGLCIWPLLSETRYDHIS 552 (585)
Q Consensus 519 L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~ 552 (585)
++|+|+|||+|+|++|+++++ ++++..++.
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~----~~~~~~g~~ 116 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAAL----EWARKRGIS 116 (156)
T ss_pred EEecchhhccchHHHHHHHHH----HHHHHcCce
Confidence 999999999999999999999 888887774
No 159
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=96.04 E-value=0.014 Score=54.85 Aligned_cols=75 Identities=17% Similarity=0.190 Sum_probs=51.5
Q ss_pred CeEEEEEEEeeec---cCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHH-HcCCcccC---ccceeccccccccc
Q 007903 497 GQIIACAALFPFF---KEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETR-YDHISTNG---FPFLRGRTHSYYRL 569 (585)
Q Consensus 497 g~IVG~~~l~~~~---~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~-~~gi~~~g---~~~~~~~a~~YYrl 569 (585)
+++||.+.+.... ....++|. ..+.|+|||+|+|+..+..++ +++- ..++.... +.........+.|+
T Consensus 77 ~~~iG~~~~~~~~~~~~~~~~~ig-~~l~~~~~g~G~~tea~~~~l----~~~f~~~~l~ri~~~~~~~N~~S~rv~ek~ 151 (187)
T COG1670 77 GELIGVIGLSDIDRAANGDLAEIG-YWLDPEYWGKGYATEALRALL----DYAFEELGLHRIEATVDPENEASIRVYEKL 151 (187)
T ss_pred CeEEEEEEEEEeccccccceEEEE-EEEChHHhcCchHHHHHHHHH----HHhhhhcCceEEEEEecCCCHHHHHHHHHc
Confidence 4899999998543 24566764 667999999999999999999 5543 36665532 12222334456688
Q ss_pred CeeecCc
Q 007903 570 KFNCSSK 576 (585)
Q Consensus 570 GF~~~~~ 576 (585)
||+..+.
T Consensus 152 Gf~~eg~ 158 (187)
T COG1670 152 GFRLEGE 158 (187)
T ss_pred CChhhhh
Confidence 8886653
No 160
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.98 E-value=0.019 Score=66.32 Aligned_cols=115 Identities=21% Similarity=0.173 Sum_probs=69.3
Q ss_pred cCHHHHHHHHHHHHHccccccCCHHHHHhcc----CeEEEEEECC-eEEEEEEEeee----------------c------
Q 007903 457 TDLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVEREG-QIIACAALFPF----------------F------ 509 (585)
Q Consensus 457 ~D~~~I~~Li~~~~~~~~~~~~~~e~l~~~i----~~~~Va~~dg-~IVG~~~l~~~----------------~------ 509 (585)
.|-+.+.+++.-+...++-. ++.++..-+ .+++++..++ ++|+.+.+..- +
T Consensus 437 ~~ee~Lr~~~gllV~AHYRn--sP~DL~~L~DaP~h~~~al~~~~~~~va~~qva~EG~l~~~~i~~~~~g~r~~GnlIp 514 (758)
T COG1444 437 FDEELLRQVYGLLVSAHYRN--SPNDLRRLLDAPHHHIFALRAPEGKPVAVWQVAEEGGLSDELIDIWLGGRRPRGNLIP 514 (758)
T ss_pred hCHHHHHHHHhHHhhhhccC--CHHHHHHHhcCCCCeeEEEEcCCCceEEEEEeeccCCCcHHHHHHHhcCCCCCCcccH
Confidence 34344444443344444422 344444333 6788887776 77777766310 0
Q ss_pred -------------cCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHH-HcCCcccCccceecccccccccCeeecC
Q 007903 510 -------------KEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETR-YDHISTNGFPFLRGRTHSYYRLKFNCSS 575 (585)
Q Consensus 510 -------------~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~-~~gi~~~g~~~~~~~a~~YYrlGF~~~~ 575 (585)
.-....|.+|+|||++|++|||++|++.++ ++++ ....-..+|.....=.++|-|.||.+.+
T Consensus 515 ~~l~~~~~~~~fa~l~G~RIvRIAvhPe~q~~GiGsrlL~~l~----~~a~~~~DwlgvsFG~t~~L~rFW~rnGF~pVh 590 (758)
T COG1444 515 DLLAKHHRDPEFAKLVGWRIVRIAVHPELQRMGIGSRLLALLI----EEARKGLDWLGVSFGYTEELLRFWLRNGFVPVH 590 (758)
T ss_pred HHHHHhhcchhhcccceeeEEEEEeCHHHHhcCHHHHHHHHHH----HHHhcCCCEEeeccCCCHHHHHHHHHcCeEEEE
Confidence 002347889999999999999999999999 7775 2333334444322333445589999875
Q ss_pred cc
Q 007903 576 KS 577 (585)
Q Consensus 576 ~~ 577 (585)
-+
T Consensus 591 ls 592 (758)
T COG1444 591 LS 592 (758)
T ss_pred ec
Confidence 43
No 161
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=95.70 E-value=0.0045 Score=57.51 Aligned_cols=119 Identities=14% Similarity=0.082 Sum_probs=70.6
Q ss_pred cccccccccCHHHHHHHHHHHHHcccccc--CCHHHHHhcc--------------CeEEEEEECCeEEEEEEEeeec---
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVESGALVR--RTDEELLKAL--------------DSFYVVEREGQIIACAALFPFF--- 509 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~~~~~~--~~~e~l~~~i--------------~~~~Va~~dg~IVG~~~l~~~~--- 509 (585)
..||+..++|++++..| +..++... .+.+-+...+ ..+. -...+.+||++.-....
T Consensus 12 ~~irp~i~e~~q~~~~L----ea~~FPe~erasfeii~~r~i~~pevc~glf~~~~h~~-~~~~~tLIghIigs~~~~E~ 86 (190)
T KOG4144|consen 12 PRIRPGIPESCQRRHTL----EASEFPEDERASFEIIRERFISVPEVCPGLFDEIRHFL-TLCEGTLIGHIIGSLWDKER 86 (190)
T ss_pred ccCCCCChHHHHHHhcc----ccccCChhHHHHHHHHHHHHhcchhhcchhhhhHHhhh-hhccccceehhhcccCcchh
Confidence 56999999998888887 55555321 1122222222 1111 11257888887654321
Q ss_pred -----------cCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcc-cCccceecccccccccCeeecCc
Q 007903 510 -----------KEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHIST-NGFPFLRGRTHSYYRLKFNCSSK 576 (585)
Q Consensus 510 -----------~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~-~g~~~~~~~a~~YYrlGF~~~~~ 576 (585)
......|+.++|+|+||.+|+|..|+..-+ +..-++-+.. ..+..-..-..+|+++||...+.
T Consensus 87 lt~ESm~kh~s~g~ni~iHsl~Ihpa~rk~g~a~~Ll~~yl----q~l~~q~i~~r~~Li~h~pLvPFYEr~gFk~vgp 161 (190)
T KOG4144|consen 87 LTQESMTKHRSGGHNIHIHSLAIHPAFRKQGRAPILLWRYL----QHLGSQPIVRRAALICHDPLVPFYERFGFKAVGP 161 (190)
T ss_pred hhHHHHhhhhcCCcceeEEEEEecHHHHhcCcchhHHHHHH----HHhhcCccccceeeeecCCccchhHhcCceeecc
Confidence 134578999999999999999999998866 3332222222 22222223344666899987643
No 162
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=95.65 E-value=0.012 Score=61.61 Aligned_cols=82 Identities=17% Similarity=0.269 Sum_probs=63.2
Q ss_pred CeEEEEEECCeEEEEEEEeeec--c----CCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccceec
Q 007903 488 DSFYVVEREGQIIACAALFPFF--K----EKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRG 561 (585)
Q Consensus 488 ~~~~Va~~dg~IVG~~~l~~~~--~----~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~~ 561 (585)
..++|...+.++++.....++. + -+.+-|..+++.|+|||+|.-++||.+.+ +..++.|+.-. ++..
T Consensus 39 ~n~~vi~~nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sL----re~~~kG~p~s---~L~P 111 (389)
T COG4552 39 PNSYVIYMNQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSL----REIARKGYPVS---ALHP 111 (389)
T ss_pred CcceEEeehhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHH----HHHHHcCCeeE---Eecc
Confidence 5688889999999887775431 1 24678899999999999999999999999 88888888743 3444
Q ss_pred cccccc-ccCeeecCc
Q 007903 562 RTHSYY-RLKFNCSSK 576 (585)
Q Consensus 562 ~a~~YY-rlGF~~~~~ 576 (585)
....+| |+||+..+-
T Consensus 112 ~s~~iYrKfGye~asn 127 (389)
T COG4552 112 FSGGIYRKFGYEYASN 127 (389)
T ss_pred CchhhHhhccccccce
Confidence 444444 799987754
No 163
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=95.16 E-value=0.13 Score=54.24 Aligned_cols=133 Identities=5% Similarity=-0.162 Sum_probs=76.5
Q ss_pred eEEEEeCCccCCCCChHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccccCCccCCCHHHHHHHHHHHhHHHH
Q 007903 101 TFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRM 180 (585)
Q Consensus 101 ~iVIKlGGs~l~~~~l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~~~g~rvt~~~~l~~~~~~~G~i~~ 180 (585)
.-+.++++-+..++ ..+....+..+.+.++-+++.|||+++-..-+-..|.. ..+| |.+.+..+.+-. ....++.
T Consensus 142 ~~~s~v~~~v~~~~-~~e~t~s~f~~~~v~~t~ivl~~~~~p~i~e~~i~gn~--i~~G-r~~~~h~~~~~~-~~~~~~~ 216 (495)
T COG5630 142 IGNSNFIPIVKPYV-YNEETASEFMTKDVVKFMDCLCQGNIPHIDKFFILNNA--IPSG-RNDNAHVFILSQ-ELEHLSS 216 (495)
T ss_pred ccccceecccCCCc-chhhhHHHHHHHhhhheeeeecCCCCccceeeeecccc--cccc-cccccchhhHHH-HHHHHHH
Confidence 45888888887664 45556667778888999999999988755443344444 4567 787777654211 1122222
Q ss_pred HHHHhhCCCCCchhHHhcCCCCcceeEEeeecCcceeeeeeccccccccCcceeeEEEecHHHHHHHHcCCCeEEEcCCc
Q 007903 181 MIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLG 260 (585)
Q Consensus 181 ~L~~~L~~~~~~~~l~~~Gi~~~~~av~l~~~dg~~~~a~~~g~~~g~d~g~~G~v~~v~~~~I~~lL~~G~IPVi~~v~ 260 (585)
.+.+.++ ..+-. -+...+.+..+.. ..|++.++++...| .+..+++.-.+|+.+..+
T Consensus 217 ~l~~~~~---------~~~kR-------~t~s~~~l~~~~~-----~~de~~~~e~~yh~--~nl~l~r~~l~~l~a~a~ 273 (495)
T COG5630 217 SLSHNIS---------TLTKR-------EPRSQNLLHRMEV-----KKDEISSLECEYHD--ENLLLMDKVLSNLAATAT 273 (495)
T ss_pred HHhhccc---------ccccc-------Cccccchhhhhhh-----hhcccccccccccC--hHHHHHHHHhhhcchhhc
Confidence 2222111 11111 1122222333221 34788888888888 455578888888877643
Q ss_pred c
Q 007903 261 Y 261 (585)
Q Consensus 261 ~ 261 (585)
-
T Consensus 274 ~ 274 (495)
T COG5630 274 G 274 (495)
T ss_pred c
Confidence 3
No 164
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=94.64 E-value=0.068 Score=54.51 Aligned_cols=88 Identities=17% Similarity=0.275 Sum_probs=57.6
Q ss_pred cccccccccCHHHHHHHHHHHHHccccccCCHHHHHhcc----------------CeEEEEEE--CCeEEEEEEEee---
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----------------DSFYVVER--EGQIIACAALFP--- 507 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~~~~~~~~~e~l~~~i----------------~~~~Va~~--dg~IVG~~~l~~--- 507 (585)
+.+|+++..|++++.+|....-.--..+|.+.+.+...+ ..++|.++ .|+++|++.+.-
T Consensus 2 lvvRP~~~aDl~al~~LA~~sg~G~TsLP~de~~L~~Ri~~se~sf~~~~~~ge~~Y~fVLEDsetG~VvG~saI~a~vG 81 (336)
T COG3138 2 LVVRPVERADLEALMELAVKTGVGLTSLPADEATLRARIERSEKSFQGELPPGEAGYLFVLEDSETGTVVGISAIEAAVG 81 (336)
T ss_pred cccccccccCHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEecCCceEEeEEEEEEeec
Confidence 458999999999999994322111123444444443322 45677776 699999987631
Q ss_pred ----ec----------------------------cCCceEEeeEEEccCCcCCcHHHHHHH
Q 007903 508 ----FF----------------------------KEKCGEVAAIGVSPECRGQGQGDKLLG 536 (585)
Q Consensus 508 ----~~----------------------------~~~~aeI~~L~V~PeyRGkGIGk~LL~ 536 (585)
++ -..+.|+..++++|+||.-+.|+.|-+
T Consensus 82 l~~PfYsyRv~tlvhaS~~L~v~~~i~~L~L~Nd~TG~SEl~sLFl~pd~Rkg~nG~Llsr 142 (336)
T COG3138 82 LNDPFYSYRVGTLVHASPELNVYNEIPTLFLSNDLTGNSELCTLFLDPDWRKGGNGRLLSK 142 (336)
T ss_pred cCCccceeeeeeeeecCccccccccceeEEEeccCcCchhhhheeecHHHhcccchhhhhh
Confidence 00 124568889999999999888876543
No 165
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=93.84 E-value=0.048 Score=44.48 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=23.8
Q ss_pred eEEeeEEEccCCcCCcHHHHHHHHHH
Q 007903 514 GEVAAIGVSPECRGQGQGDKLLGLCI 539 (585)
Q Consensus 514 aeI~~L~V~PeyRGkGIGk~LL~~~~ 539 (585)
.=|..|.|+|.+|++||+++||+.+.
T Consensus 6 ~GI~RIWV~~~~RR~GIAt~Lld~ar 31 (70)
T PF13880_consen 6 CGISRIWVSPSHRRKGIATRLLDAAR 31 (70)
T ss_pred EEeEEEEeChhhhhhhHHHHHHHHHH
Confidence 34778999999999999999999998
No 166
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=93.22 E-value=0.21 Score=50.71 Aligned_cols=86 Identities=16% Similarity=0.103 Sum_probs=54.4
Q ss_pred eEEEEEE-CCeEEEEEEEeee---------c--------------------cCCceEEeeEEEccCCcCC--------c-
Q 007903 489 SFYVVER-EGQIIACAALFPF---------F--------------------KEKCGEVAAIGVSPECRGQ--------G- 529 (585)
Q Consensus 489 ~~~Va~~-dg~IVG~~~l~~~---------~--------------------~~~~aeI~~L~V~PeyRGk--------G- 529 (585)
++++... +|++||++.+.+. + .+...|+.+++|+|+||++ |
T Consensus 57 h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~ 136 (241)
T TIGR03694 57 HSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGV 136 (241)
T ss_pred EEEEEECCCCCEEEEEEEeccccccccccccHHHHhccccchhhcCccccCCCceEEeehheECHhHhCCcccccccccc
Confidence 3444433 5899999988642 0 1246799999999999974 2
Q ss_pred -------------------HHHHHHHHHHhhhHHHHHHcCCcccCccceecccccccccCeeecCccc
Q 007903 530 -------------------QGDKLLGLCIWPLLSETRYDHISTNGFPFLRGRTHSYYRLKFNCSSKSF 578 (585)
Q Consensus 530 -------------------IGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~~~a~~YYrlGF~~~~~~~ 578 (585)
+...|+..+. +.|..+|++..-......-...+.++||.+..-+-
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~----~~a~~~Gi~~~~~v~~~~l~r~l~r~G~~~~~lG~ 200 (241)
T TIGR03694 137 GVIETEAPFSESERRRFPHIPLGLYLGLI----ALSSANGITHWYAIMEPRLARLLSRFGIQFRQVGP 200 (241)
T ss_pred cccccccccchhhcccCchHHHHHHHHHH----HHHHHCCCcEEEEEeCHHHHHHHHHhCCceEEcCC
Confidence 4566888888 89999999763211111111234467776654433
No 167
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=92.68 E-value=0.39 Score=46.65 Aligned_cols=49 Identities=14% Similarity=0.132 Sum_probs=36.1
Q ss_pred eEEEEEEEeeeccCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCC
Q 007903 498 QIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHI 551 (585)
Q Consensus 498 ~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi 551 (585)
.++||.+=.. .+....-+.+|.|.|.||++|+|+.|++..- +.++..+.
T Consensus 66 h~vGyFSKEk-~s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY----~LSr~e~~ 114 (188)
T PF01853_consen 66 HIVGYFSKEK-ESWDNNNLSCILTLPPYQRKGYGRFLIDFSY----ELSRREGK 114 (188)
T ss_dssp EEEEEEEEES-S-TT-EEESEEEE-GGGTTSSHHHHHHHHHH----HHHHHTTS
T ss_pred eeEEEEEEEe-cccCCeeEeehhhcchhhhcchhhhhhhhHH----HHhhccCc
Confidence 5888876542 2334557899999999999999999999988 66666553
No 168
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=92.48 E-value=0.15 Score=46.33 Aligned_cols=122 Identities=17% Similarity=0.171 Sum_probs=78.4
Q ss_pred cccccccccCHHHHHHHHHHHHHccccccCCHHHHHhccCeEEEEEECCeEEEEEEEee----ec----------cCCce
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFP----FF----------KEKCG 514 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~~~~~~~~~e~l~~~i~~~~Va~~dg~IVG~~~l~~----~~----------~~~~a 514 (585)
..||.....|..++..|.++..-+ +.+...+.+.......|+++.+|.+.|+....- +. -++.-
T Consensus 8 ~~~~D~~apd~aavLaLNNeha~e--lswLe~erL~~l~~eAF~ArR~G~l~afl~tFd~~a~ydSpNFlWFrErYe~F~ 85 (167)
T COG3818 8 ILIRDVRAPDLAAVLALNNEHALE--LSWLELERLYRLYKEAFVARRDGNLAAFLVTFDSSARYDSPNFLWFRERYENFF 85 (167)
T ss_pred eehhhhcCCchhhHHhccchhhhh--ccccCHHHHHHHHHHHHHHhhccchhhheeeccccccCCCCceeehhhhCCceE
Confidence 446666777888888884432211 112244555444444468888888777765421 00 13456
Q ss_pred EEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccce----eccccccc-ccCeeecCc
Q 007903 515 EVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFL----RGRTHSYY-RLKFNCSSK 576 (585)
Q Consensus 515 eI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~----~~~a~~YY-rlGF~~~~~ 576 (585)
+|+++.|....||+|+|++|.+.+. +.|+..|+........ ......|- .+||...++
T Consensus 86 YvDRvVVA~~aRGrG~aRalY~Dlf----~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~ 148 (167)
T COG3818 86 YVDRVVVASRARGRGVARALYADLF----SYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQ 148 (167)
T ss_pred EEEEEEEEecccccchHHHHHHHHH----HHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccc
Confidence 8999999999999999999999999 8888888765433221 12233354 588887654
No 169
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=89.73 E-value=1.2 Score=43.29 Aligned_cols=85 Identities=16% Similarity=0.135 Sum_probs=56.1
Q ss_pred CeEEEEEECCeEEEEEEEeeec--------------------cCCceEEeeEEEccCCcC------CcHHHHHHHHHHhh
Q 007903 488 DSFYVVEREGQIIACAALFPFF--------------------KEKCGEVAAIGVSPECRG------QGQGDKLLGLCIWP 541 (585)
Q Consensus 488 ~~~~Va~~dg~IVG~~~l~~~~--------------------~~~~aeI~~L~V~PeyRG------kGIGk~LL~~~~~~ 541 (585)
..++++..+|+++|++.+.|.. .+...|+.+++|+|+.++ .-+...|+..+.
T Consensus 45 ~~ylv~~~~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~-- 122 (182)
T PF00765_consen 45 AVYLVALDDGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMV-- 122 (182)
T ss_dssp -EEEEEEETTEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHH--
T ss_pred CeEEEEEECCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccHHHHHHHHHHH--
Confidence 4566777889999999997521 145689999999998532 247788999999
Q ss_pred hHHHHHHcCCcccCccceecccccccccCeeecCc
Q 007903 542 LLSETRYDHISTNGFPFLRGRTHSYYRLKFNCSSK 576 (585)
Q Consensus 542 a~~~A~~~gi~~~g~~~~~~~a~~YYrlGF~~~~~ 576 (585)
++|.++|+...-...-..-...|.+.||.+.-.
T Consensus 123 --e~a~~~gi~~~v~V~~~~~~r~l~r~G~~~~~l 155 (182)
T PF00765_consen 123 --EFALSNGIRHIVGVVDPAMERILRRAGWPVRRL 155 (182)
T ss_dssp --HHHHCTT-SEEEEEEEHHHHHHHHHCT-EEEES
T ss_pred --HHHHHCCCCEEEEEEChHHHHHHHHcCCceEEC
Confidence 999999998742221111223466788887643
No 170
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=89.66 E-value=0.71 Score=47.60 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=37.3
Q ss_pred CeEEEEEEEeeeccCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCC
Q 007903 497 GQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHI 551 (585)
Q Consensus 497 g~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi 551 (585)
-.+|||.+=... .....-+.+|-|.|.||++|+|+.|++..- +.++..|.
T Consensus 140 ~h~vGYFSKEK~-s~~~nNLaCIltLPpyQrkGyG~~LI~fSY----eLSr~Eg~ 189 (290)
T PLN03238 140 SHIVGYFSKEKV-SAEDYNLACILTLPPYQRKGYGKFLISFAY----ELSKREGK 189 (290)
T ss_pred cEEEEEeceecc-ccCCCcEEEEEecChhhhccHhHhHHHHHh----HHhhccCC
Confidence 368888654421 222345889999999999999999999998 66666653
No 171
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=87.90 E-value=2 Score=42.51 Aligned_cols=84 Identities=12% Similarity=0.072 Sum_probs=53.7
Q ss_pred CeEEEEE-ECCeEEEEEEEeeec--------------------cCCceEEeeEEEccCCcCC---c----HHHHHHHHHH
Q 007903 488 DSFYVVE-REGQIIACAALFPFF--------------------KEKCGEVAAIGVSPECRGQ---G----QGDKLLGLCI 539 (585)
Q Consensus 488 ~~~~Va~-~dg~IVG~~~l~~~~--------------------~~~~aeI~~L~V~PeyRGk---G----IGk~LL~~~~ 539 (585)
..+++.. .+|+++|++.+.+.. .++..|+.+++|+|+++.. + +...|+..+.
T Consensus 53 ~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~ 132 (207)
T PRK13834 53 PTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLNAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGII 132 (207)
T ss_pred CEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcCCCCCCCCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHH
Confidence 3455544 568999999885320 2457899999999986422 2 5677888888
Q ss_pred hhhHHHHHHcCCcccCccceecccccccccCeeecC
Q 007903 540 WPLLSETRYDHISTNGFPFLRGRTHSYYRLKFNCSS 575 (585)
Q Consensus 540 ~~a~~~A~~~gi~~~g~~~~~~~a~~YYrlGF~~~~ 575 (585)
+++..+|+...-......-...|.++||.+..
T Consensus 133 ----~~a~~~Gi~~~~~v~~~~~~r~l~r~G~~~~~ 164 (207)
T PRK13834 133 ----EWSMANGYTEIVTATDLRFERILARAGWPMQR 164 (207)
T ss_pred ----HHHHHCCCCEEEEEECHHHHHHHHHcCCCeEE
Confidence 89999999864211111111235567777653
No 172
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=86.37 E-value=8.6 Score=35.22 Aligned_cols=79 Identities=16% Similarity=0.157 Sum_probs=52.2
Q ss_pred eEEEEEECCeEEEEEEEeeeccCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcc--cCccceecccccc
Q 007903 489 SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHIST--NGFPFLRGRTHSY 566 (585)
Q Consensus 489 ~~~Va~~dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~--~g~~~~~~~a~~Y 566 (585)
.++-...+|++||.+.+... .+...-|. .+-+|++....+|+-.+=.-+ +.|++.|++- .|++ +.+-..-=
T Consensus 40 ~~~~~~~~~kLiav~v~D~l-~~glSaVY-~fyDPd~~~~SlG~~~iL~eI----~~a~~~~l~y~YLGY~-I~~c~kM~ 112 (128)
T PF04377_consen 40 YHLEYRLDGKLIAVAVVDIL-PDGLSAVY-TFYDPDYSKRSLGTYSILREI----ELARELGLPYYYLGYW-IHGCPKMN 112 (128)
T ss_pred EEEEEEeCCeEEEEEEeecc-cchhhhee-eeeCCCccccCcHHHHHHHHH----HHHHHcCCCEEeeCeE-eCCCCccc
Confidence 34445679999999888743 23333444 345999999999999988888 8899888764 3443 23333334
Q ss_pred cccCeeec
Q 007903 567 YRLKFNCS 574 (585)
Q Consensus 567 YrlGF~~~ 574 (585)
||..|.+.
T Consensus 113 YK~~f~P~ 120 (128)
T PF04377_consen 113 YKARFRPH 120 (128)
T ss_pred chhcCCce
Confidence 45555543
No 173
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=86.34 E-value=2.4 Score=38.14 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=23.0
Q ss_pred EEeeEEEccCCcCCcHHHHHHHHHH
Q 007903 515 EVAAIGVSPECRGQGQGDKLLGLCI 539 (585)
Q Consensus 515 eI~~L~V~PeyRGkGIGk~LL~~~~ 539 (585)
-|-++||++..|++|+|++|+++++
T Consensus 48 cvLDFyVhes~QR~G~Gk~LF~~ML 72 (120)
T PF05301_consen 48 CVLDFYVHESRQRRGYGKRLFDHML 72 (120)
T ss_pred eeeeEEEEeceeccCchHHHHHHHH
Confidence 4567899999999999999999999
No 174
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=86.33 E-value=1.9 Score=41.90 Aligned_cols=49 Identities=20% Similarity=0.323 Sum_probs=33.6
Q ss_pred EEEEE-CCeEEEEEEEeeec------cCCceEEeeEEEccCCcCCcHHHHHHHHHH
Q 007903 491 YVVER-EGQIIACAALFPFF------KEKCGEVAAIGVSPECRGQGQGDKLLGLCI 539 (585)
Q Consensus 491 ~Va~~-dg~IVG~~~l~~~~------~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~ 539 (585)
+++.. ..++|+...+..+. +...-.+...+++|+|||+|+++.+-+.+.
T Consensus 49 ~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~kl~~~~~~ 104 (181)
T PF06852_consen 49 LTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMKLQDDICM 104 (181)
T ss_pred EEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHHHHHHHHH
Confidence 33433 35788888775432 234678889999999999999964444443
No 175
>PTZ00064 histone acetyltransferase; Provisional
Probab=86.07 E-value=1.3 Score=48.78 Aligned_cols=50 Identities=16% Similarity=0.073 Sum_probs=37.5
Q ss_pred CeEEEEEEEeeeccCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCC
Q 007903 497 GQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHI 551 (585)
Q Consensus 497 g~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi 551 (585)
-.+|||..=.. ......-+.+|-|.|.||++|+|+.|++..- +.++..|.
T Consensus 369 ~HiVGYFSKEK-~S~~~nNLACILtLPpyQRKGYGklLIdfSY----eLSrrEgk 418 (552)
T PTZ00064 369 CHIVGYFSKEK-VSLLHYNLACILTLPCYQRKGYGKLLVDLSY----KLSLKEGK 418 (552)
T ss_pred cEEEEEecccc-cCcccCceEEEEecchhhhcchhhhhhhhhh----hhhhhcCC
Confidence 37888865432 1223346899999999999999999999998 66666654
No 176
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=86.01 E-value=2 Score=38.62 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=38.1
Q ss_pred CeEEEEEECCeEEEEEEEeeec---cCCceEEeeEEEccCCcCCcHHHHHHHHHH
Q 007903 488 DSFYVVEREGQIIACAALFPFF---KEKCGEVAAIGVSPECRGQGQGDKLLGLCI 539 (585)
Q Consensus 488 ~~~~Va~~dg~IVG~~~l~~~~---~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~ 539 (585)
..-|....+|.+|||+.+--.. .+-.--+..+++...|||+|+|++-...+.
T Consensus 37 ~~~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efFIi~k~~~~GvGR~aaK~If 91 (143)
T COG5628 37 REAWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFFIVRKHRRRGVGRAAAKAIF 91 (143)
T ss_pred cceeEEEECCceeeeeeeecccCCCCcccccchheEeeehhhccchhHHHHHHHH
Confidence 4455667789999999874211 111234667899999999999999988887
No 177
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=85.84 E-value=2.2 Score=37.29 Aligned_cols=46 Identities=17% Similarity=0.037 Sum_probs=36.4
Q ss_pred EECCeEEEEEEEeeec-cCCceEEeeEEEccCCcCCcHHHHHHHHHH
Q 007903 494 EREGQIIACAALFPFF-KEKCGEVAAIGVSPECRGQGQGDKLLGLCI 539 (585)
Q Consensus 494 ~~dg~IVG~~~l~~~~-~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~ 539 (585)
..++...|++.+.+.. .+...+|..++|.|..||+|+|+.|++.+.
T Consensus 14 y~~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~ 60 (99)
T cd04264 14 YLSEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLR 60 (99)
T ss_pred EEeCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHH
Confidence 3455677777775311 137889999999999999999999999998
No 178
>PLN03239 histone acetyltransferase; Provisional
Probab=85.72 E-value=1.6 Score=46.19 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=36.2
Q ss_pred eEEEEEEEeeeccCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCC
Q 007903 498 QIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHI 551 (585)
Q Consensus 498 ~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi 551 (585)
.+|||.+=.. ......-+.+|-|.|.||++|+|+.|++..- +.++..|.
T Consensus 199 h~vGYFSKEK-~s~~~~NLaCIltLPpyQrkGyG~lLI~fSY----eLSr~Eg~ 247 (351)
T PLN03239 199 HPVGYYSKEK-YSDVGYNLACILTFPAHQRKGYGRFLIAFSY----ELSKKEEK 247 (351)
T ss_pred EEEEEeeecc-cCCCCCceEEEEecChhhhcchhhhhHhhhh----HhhhhcCC
Confidence 6788765432 1122346899999999999999999999988 66666554
No 179
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=84.60 E-value=5.9 Score=37.59 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=43.4
Q ss_pred ECCeEEEEEEEeeec------cCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCccc
Q 007903 495 REGQIIACAALFPFF------KEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTN 554 (585)
Q Consensus 495 ~dg~IVG~~~l~~~~------~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~ 554 (585)
..+++|||+...+.. .-+..+|.-|+||++.|.++++--|++++. .++...|+-+.
T Consensus 86 ~~~kLvgfIsaip~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEIt----RRvn~~gI~qA 147 (162)
T PF01233_consen 86 SSKKLVGFISAIPATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEIT----RRVNLQGIWQA 147 (162)
T ss_dssp TTTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHH----HHHHTTT--EE
T ss_pred CCCEEEEEEccceEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHH----HHhhhcCceee
Confidence 369999999886531 124678999999999999999999999999 77777777653
No 180
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=84.09 E-value=0.99 Score=42.05 Aligned_cols=58 Identities=16% Similarity=0.240 Sum_probs=39.2
Q ss_pred ceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHH-cCCcccCccc---eecccccccccCeeec
Q 007903 513 CGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRY-DHISTNGFPF---LRGRTHSYYRLKFNCS 574 (585)
Q Consensus 513 ~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~-~gi~~~g~~~---~~~~a~~YYrlGF~~~ 574 (585)
.+++.-+.-.|..||+|+|++.+..++ .++.. +++.+.-+.. .....+.|.+++|+-.
T Consensus 107 ~gE~EvMIAEP~~RgKG~G~eav~~ml----~y~~s~l~l~Ky~vkig~~nk~sl~lFkk~~f~q~ 168 (185)
T KOG4135|consen 107 TGEVEVMIAEPRGRGKGIGTEAVRAML----AYAYSVLKLDKYEVKIGMDNKPSLRLFKKFLFTQV 168 (185)
T ss_pred eeeEEEEEecccccCCCccHHHHHHHH----HHHHHHhhhheEEEEecCCCchHHHHHHHhhheee
Confidence 578888899999999999999999999 55443 2333211111 2234556778888744
No 181
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=82.65 E-value=1.5 Score=48.13 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=37.0
Q ss_pred CeEEEEEEEeeeccCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCC
Q 007903 497 GQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHI 551 (585)
Q Consensus 497 g~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi 551 (585)
-.+|||.+=.. ......-+.+|-|.|.||++|+|+.|++..- +..+..|.
T Consensus 291 ~h~vGyFSKEk-~s~~~~NLaCIltlP~yQrkGyG~~LI~~SY----eLSr~eg~ 340 (450)
T PLN00104 291 CHMVGYFSKEK-HSEEDYNLACILTLPPYQRKGYGKFLIAFSY----ELSKREGK 340 (450)
T ss_pred cEEEEEecccc-cCcCCCceEEEEecchhhhcchhheehhhee----hhhhccCC
Confidence 37889865442 1222346899999999999999999999988 55555553
No 182
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=82.62 E-value=3.2 Score=36.30 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=33.6
Q ss_pred CCeEEEEEEEeeeccCCceEEeeEEEccCCcCCcHHHHHHHHHH
Q 007903 496 EGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCI 539 (585)
Q Consensus 496 dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~ 539 (585)
++..=|++.+.+...+...+|..++|.|..||+|+|+.|++.+.
T Consensus 17 ~e~y~~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~ 60 (99)
T cd04265 17 SEGYNAAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLR 60 (99)
T ss_pred eCCCcEEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHH
Confidence 34444555554211136889999999999999999999999998
No 183
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=81.31 E-value=6.9 Score=39.06 Aligned_cols=65 Identities=14% Similarity=0.053 Sum_probs=47.1
Q ss_pred CeEEEEEEC-CeEEEEEEEeeeccCC--ceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCc
Q 007903 488 DSFYVVERE-GQIIACAALFPFFKEK--CGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGF 556 (585)
Q Consensus 488 ~~~~Va~~d-g~IVG~~~l~~~~~~~--~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~ 556 (585)
..++-+..+ |++||...-+|..... +.+-+.+.|.|++++.|+|-+|=.+=- +++.++|++....
T Consensus 46 GlvlgAf~~dg~lVGls~G~pg~r~g~~y~ySH~~gV~e~~k~sglg~aLK~~Qr----e~a~~~G~tli~W 113 (266)
T COG3375 46 GLVLGAFSADGRLVGLSYGYPGGRGGSLYLYSHMLGVREEVKGSGLGVALKMKQR----ERALSMGYTLIAW 113 (266)
T ss_pred CeEEEEEcCCCcEEEEEeccCCcCCCceeeeeeehhccccccccchhhhhHHHHH----HHHHhcCeeeEEE
Confidence 455656654 5999998877632222 345556899999999999999866655 7899999987543
No 184
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=80.97 E-value=13 Score=36.42 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=56.8
Q ss_pred cccccccccCHHHHHHHHHHHHHccccc-cCCHHHHHhcc------CeEEEEEEC-CeEEEEEEEeeecc-----CCceE
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVESGALV-RRTDEELLKAL------DSFYVVERE-GQIIACAALFPFFK-----EKCGE 515 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~~~~~-~~~~e~l~~~i------~~~~Va~~d-g~IVG~~~l~~~~~-----~~~ae 515 (585)
..+|+++++|++++.+|++...+.-.+. ..+.+++.-.+ -..+|.+++ |+|-.+++.+..+. ++...
T Consensus 29 ~glR~m~~~Dv~~v~~Ll~~yl~~f~l~~~fs~eev~Hw~lp~~~Vv~syVve~~~~~ITDf~SFY~Lpstvi~~~k~~~ 108 (190)
T PF02799_consen 29 PGLRPMEEKDVPQVTKLLNKYLKKFDLAPVFSEEEVKHWFLPRKNVVYSYVVEDPDGKITDFFSFYSLPSTVIGNPKHKT 108 (190)
T ss_dssp TTEEE--GGGHHHHHHHHHHHHTTSSEEEE--HHHHHHHHS-BTTTEEEEEEEETTSEEEEEEEEEEEEEEESSSSSSSE
T ss_pred CccccCchhhHHHHHHHHHHHHHhcccccccCHHHHHhhcccCCCeEEEEEEecCCCceeeEEEEeecceeecCCCCccc
Confidence 3489999999999999988776654332 34667766555 235566655 58888888764321 22222
Q ss_pred Eee----EEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcc
Q 007903 516 VAA----IGVSPECRGQGQGDKLLGLCIWPLLSETRYDHIST 553 (585)
Q Consensus 516 I~~----L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~ 553 (585)
|.. .++... ==-++||..++ -.|++.|+..
T Consensus 109 l~aAY~fY~~~~~----~~l~~Lm~DaL----i~Ak~~gfDV 142 (190)
T PF02799_consen 109 LKAAYSFYYVATS----TRLKELMNDAL----ILAKNEGFDV 142 (190)
T ss_dssp EEEEEEEEEEESS----SHHHHHHHHHH----HHHHHTTESE
T ss_pred eeeeeeeeeeecC----CCHHHHHHHHH----HHHHHcCCCE
Confidence 221 233332 12345666666 7888988864
No 185
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=78.42 E-value=24 Score=35.83 Aligned_cols=92 Identities=14% Similarity=0.189 Sum_probs=57.8
Q ss_pred cccCCHHHHHhcc------CeEEEEEECCeEEEEEEEeeeccCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHH
Q 007903 475 LVRRTDEELLKAL------DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRY 548 (585)
Q Consensus 475 ~~~~~~e~l~~~i------~~~~Va~~dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~ 548 (585)
+.+.+.+.+...+ ..++-...+|++||.+.+... .+...-|. .+-+|++-.+.+|+-.+-.-+ +.|++
T Consensus 125 m~~~~~~~y~~Fl~~~~~~t~~~ey~~~g~LiaVav~D~l-~d~lSAVY-~FyDPd~~~~SLG~~~iL~qI----~~ak~ 198 (240)
T PRK01305 125 MDPPSRDQYAQFLEDSWVNTRFIEFRGDGKLVAVAVTDVL-DDGLSAVY-TFYDPDEEHRSLGTFAILWQI----ELAKR 198 (240)
T ss_pred CCCCCHHHHHHHHhcCCCCcEEEEEEeCCeEEEEEEEecc-CCceeeEE-EeeCCCccccCCHHHHHHHHH----HHHHH
Confidence 3444555555443 234444578999999988743 33333443 567999999999999988888 88999
Q ss_pred cCCcc--cCccceecccccccccCeee
Q 007903 549 DHIST--NGFPFLRGRTHSYYRLKFNC 573 (585)
Q Consensus 549 ~gi~~--~g~~~~~~~a~~YYrlGF~~ 573 (585)
+|+.- .|++. .+-..-=||..|.+
T Consensus 199 ~gl~y~YLGY~I-~~c~kM~YK~~f~P 224 (240)
T PRK01305 199 LGLPYVYLGYWI-KGSRKMNYKARFRP 224 (240)
T ss_pred cCCCeEeeeEEE-CCCCcccccccCCc
Confidence 88753 34432 23333344444443
No 186
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=77.33 E-value=1.5 Score=47.90 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=35.0
Q ss_pred ccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCcccee-ccccccc-ccCeeecCc
Q 007903 522 SPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLR-GRTHSYY-RLKFNCSSK 576 (585)
Q Consensus 522 ~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~-~~a~~YY-rlGF~~~~~ 576 (585)
...||.+|+|++||+.++ ..|++.+..+.. .+. -.++.|| ++||+-.+.
T Consensus 459 ~~~~QH~G~G~~L~~~AE----~ia~ee~~~ki~--viSgiG~ReYy~k~GY~~~gp 509 (515)
T COG1243 459 EDEWQHRGYGRELLEEAE----RIAREEGAKKIL--VISGIGVREYYRKLGYELDGP 509 (515)
T ss_pred cchhhcccHHHHHHHHHH----HHHHhhccccEE--EEecccHHHHHHHhCccccCC
Confidence 477999999999999999 788877754421 111 1334566 699997654
No 187
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=76.98 E-value=13 Score=39.11 Aligned_cols=84 Identities=13% Similarity=0.110 Sum_probs=53.8
Q ss_pred eEEEEE-ECCeEEEEEEEeeeccCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCcccee-c-cccc
Q 007903 489 SFYVVE-REGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLR-G-RTHS 565 (585)
Q Consensus 489 ~~~Va~-~dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~-~-~a~~ 565 (585)
.++++. .+|++||.+.+..+ .+..........++++..+-+..|+-+++ ++|.+.|+..-.|--.. + ....
T Consensus 196 ~l~~a~~~~g~~va~~l~~~~--~~~~~~~~~g~~~~~~~~~~~~lL~w~~i----~~a~~~G~~~fDfG~s~~~~G~~~ 269 (330)
T TIGR03019 196 EVLTVRLGDGVVASAVLSFYF--RDEVLPYYAGGLREARDVAANDLMYWELM----RRACERGLRVFDFGRSKRGTGPFK 269 (330)
T ss_pred EEEEEEeCCCCEEEEEEEEEe--CCEEEEEeccChHHHHhhChHHHHHHHHH----HHHHHCCCcEEEcCCCCCCCccHH
Confidence 355666 68999988766522 23333334467899999999999999999 99999999874432110 0 1112
Q ss_pred cc-ccCeeecCccc
Q 007903 566 YY-RLKFNCSSKSF 578 (585)
Q Consensus 566 YY-rlGF~~~~~~~ 578 (585)
|- ++||+.....+
T Consensus 270 FK~~~G~~~~~l~~ 283 (330)
T TIGR03019 270 FKKNWGFEPQPLHY 283 (330)
T ss_pred HHhcCCCeeccceE
Confidence 32 36777665444
No 188
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=73.91 E-value=6.2 Score=34.15 Aligned_cols=47 Identities=17% Similarity=0.230 Sum_probs=33.5
Q ss_pred eEEEEEECCeEEEEEEEeeec----------------------cCCceEEeeEEEccCCcCCcHHHHHH
Q 007903 489 SFYVVEREGQIIACAALFPFF----------------------KEKCGEVAAIGVSPECRGQGQGDKLL 535 (585)
Q Consensus 489 ~~~Va~~dg~IVG~~~l~~~~----------------------~~~~aeI~~L~V~PeyRGkGIGk~LL 535 (585)
++++...+.++||++.+.... ..+.+||.+++|+|+||+...-..|+
T Consensus 32 h~lv~~~~~~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 32 HLLVRDKNTEVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred EEEEEECCCCEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 444443333599999875210 13578999999999999998888776
No 189
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=71.66 E-value=2.8 Score=44.11 Aligned_cols=50 Identities=18% Similarity=0.257 Sum_probs=32.4
Q ss_pred cCCcCCcHHHHHHHHHHhhhHHHHHHc-CCcccCcccee-ccccccc-ccCeeecCccc
Q 007903 523 PECRGQGQGDKLLGLCIWPLLSETRYD-HISTNGFPFLR-GRTHSYY-RLKFNCSSKSF 578 (585)
Q Consensus 523 PeyRGkGIGk~LL~~~~~~a~~~A~~~-gi~~~g~~~~~-~~a~~YY-rlGF~~~~~~~ 578 (585)
..||.||+|..||++++ ..|++. |-.+.. .+. -.++.|| ++||+..+.-|
T Consensus 497 ~KfQHQG~GtLLmeEAE----RIAr~EHgS~Kia--vISGVGtR~YY~klGY~LdGPYM 549 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAE----RIAREEHGSGKIA--VISGVGTRNYYRKLGYELDGPYM 549 (554)
T ss_pred hhhhhcchhhHHHHHHH----HHHHHhcCCCceE--EEeccchHHHHHhhCeeecChhH
Confidence 36999999999999999 666543 332221 111 1334555 79999876533
No 190
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=70.27 E-value=19 Score=35.61 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=45.7
Q ss_pred CeEEEE-EECCeEEEEEEEeeec--------------------cCCceEEeeEEEcc--CCcCCc----HHHHHHHHHHh
Q 007903 488 DSFYVV-EREGQIIACAALFPFF--------------------KEKCGEVAAIGVSP--ECRGQG----QGDKLLGLCIW 540 (585)
Q Consensus 488 ~~~~Va-~~dg~IVG~~~l~~~~--------------------~~~~aeI~~L~V~P--eyRGkG----IGk~LL~~~~~ 540 (585)
..|+++ ..+|+|+||+.+.+.. ++...|..+++|++ .-++.| ++..|+.-++
T Consensus 52 t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~i- 130 (209)
T COG3916 52 TVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMI- 130 (209)
T ss_pred ceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHH-
Confidence 455666 7789999999886421 23567899999987 333332 4778888888
Q ss_pred hhHHHHHHcCCccc
Q 007903 541 PLLSETRYDHISTN 554 (585)
Q Consensus 541 ~a~~~A~~~gi~~~ 554 (585)
+++.+.|++..
T Consensus 131 ---e~a~~~G~~~I 141 (209)
T COG3916 131 ---EYALARGITGI 141 (209)
T ss_pred ---HHHHHcCCceE
Confidence 89999999874
No 191
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=70.01 E-value=5.3 Score=43.14 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=27.6
Q ss_pred ceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcC
Q 007903 513 CGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDH 550 (585)
Q Consensus 513 ~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~g 550 (585)
..-+.+|-|.|.||++|+|+.|+++-- +..+..|
T Consensus 260 ~yNlaCILtLPpyQRkGYGklLIdFSY----eLSr~E~ 293 (396)
T KOG2747|consen 260 NYNLACILTLPPYQRKGYGKLLIDFSY----ELSRREG 293 (396)
T ss_pred ccceeeeeecChhhhcccchhhhhhhh----hhhcccC
Confidence 344889999999999999999999988 5554444
No 192
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=65.44 E-value=6.9 Score=43.29 Aligned_cols=120 Identities=15% Similarity=0.167 Sum_probs=79.4
Q ss_pred cccccccccCHHHHHHHHHHHHHccccc-cCCHHHHHhcc--CeEEEE--E-----ECCeEEEEEEEeeeccCCceEEee
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVESGALV-RRTDEELLKAL--DSFYVV--E-----REGQIIACAALFPFFKEKCGEVAA 518 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~~~~~-~~~~e~l~~~i--~~~~Va--~-----~dg~IVG~~~l~~~~~~~~aeI~~ 518 (585)
.++++....+++.+.+|.+..-+..... ..+.+++.+.. ..+.+. . -|+-+||++.+.. .++..+|+.
T Consensus 414 l~vs~~de~~i~RIsQLtqkTNQFnlTtkRy~e~dV~~~~~~~~~li~sv~l~DKfgDnGiigvviv~k--k~~~w~IDt 491 (574)
T COG3882 414 LTVSKFDEVNIPRISQLTQKTNQFNLTTKRYNEEDVRQMQEDPNFLIFSVSLKDKFGDNGIIGVVIVEK--KESEWFIDT 491 (574)
T ss_pred EEEeeccccCcHHHHHHhhcccceeechhhhcHHHHHHHhhCCCeEEEEEEeccccccCceEEEEEEEe--cCCeEEhHH
Confidence 5678888889999999965443332221 23456666522 223222 1 2466999988873 346788888
Q ss_pred EEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccceec---cc-cccc-ccCeeec
Q 007903 519 IGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRG---RT-HSYY-RLKFNCS 574 (585)
Q Consensus 519 L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~~---~a-~~YY-rlGF~~~ 574 (585)
+..+-.--|+++=.+||..++ +.|...|+.+....+..+ .. ..|| ++||...
T Consensus 492 ~lmSCRVlgRkvE~~l~~~~~----e~A~~~gi~tir~~Y~pt~kN~pv~~FyE~mgf~l~ 548 (574)
T COG3882 492 FLMSCRVLGRKVEQRLMNSLE----EQALSEGINTIRGYYIPTEKNAPVSDFYERMGFKLK 548 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHhcCcceeeeEecccccCCcHHHHHHHhccccc
Confidence 888888889999999999999 999999987643222221 11 2345 7999843
No 193
>KOG4601 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.92 E-value=8.5 Score=38.49 Aligned_cols=92 Identities=14% Similarity=0.124 Sum_probs=53.5
Q ss_pred ccccccccCHHHHHHHHHHHHH-----ccccccC-CHHHHHhcc-Ce-EEEEEEC----CeEEEEEEEe-----eec---
Q 007903 450 GTRTAKVTDLSGIKQIIQPLVE-----SGALVRR-TDEELLKAL-DS-FYVVERE----GQIIACAALF-----PFF--- 509 (585)
Q Consensus 450 ~IR~at~~D~~~I~~Li~~~~~-----~~~~~~~-~~e~l~~~i-~~-~~Va~~d----g~IVG~~~l~-----~~~--- 509 (585)
.+|+..+.-...+.+++..+-+ .+...+. +.+.+.+.- .. +++.++. +.+.|++.+. .+.
T Consensus 22 ~lrp~~p~~~~~v~eiId~LgklSAkaq~l~~piTsadKl~~sd~~vvy~~kd~~a~~ks~l~GllKVG~KkLfl~D~~~ 101 (264)
T KOG4601|consen 22 DLRPYGPKRYWAVAEIIDCLGKLSAKAQGLKRPITSADKLVDSDEEVVYYIKDEKANGKSILKGLLKVGYKKLFLTDNEQ 101 (264)
T ss_pred hcccCCcchhHHHHHHHHHHHHhhHHHhccccccchHHHhhcCcceEEEEEeecccCcchheeeeehccceeEEEeccHh
Confidence 4677777667777777654432 2222222 233332222 22 2233221 4577776542 111
Q ss_pred ---cCCceEEeeEEEccCCcCCcHHHHHHHHHHhh
Q 007903 510 ---KEKCGEVAAIGVSPECRGQGQGDKLLGLCIWP 541 (585)
Q Consensus 510 ---~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~ 541 (585)
..+..-|-++||+++.|++|.|++|++++++.
T Consensus 102 ~~ye~e~lcILDFyVheS~QR~G~G~~lfdyMl~k 136 (264)
T KOG4601|consen 102 NQYEEEALCILDFYVHESEQRSGNGFKLFDYMLKK 136 (264)
T ss_pred hhhccCCceEEEEEeehhhhhcCchHHHHHHHHHh
Confidence 12344577899999999999999999999943
No 194
>PF09390 DUF1999: Protein of unknown function (DUF1999); InterPro: IPR018987 This family contains a putative Fe-S binding reductase (Q72J89 from SWISSPROT) whose structure adopts an alpha and beta fold. ; PDB: 2D4O_A 2D4P_A.
Probab=61.50 E-value=69 Score=29.94 Aligned_cols=103 Identities=10% Similarity=0.077 Sum_probs=56.1
Q ss_pred ccccccccCHHHHHHHHHHHHHc-------------cccccCCHHH--HHhccCeEEEEE-ECCeEEEEEEEeeecc--C
Q 007903 450 GTRTAKVTDLSGIKQIIQPLVES-------------GALVRRTDEE--LLKALDSFYVVE-REGQIIACAALFPFFK--E 511 (585)
Q Consensus 450 ~IR~at~~D~~~I~~Li~~~~~~-------------~~~~~~~~e~--l~~~i~~~~Va~-~dg~IVG~~~l~~~~~--~ 511 (585)
.+|...+.|++.+.++=...... ....+.+... +.....+-|++. +++++.||+.....+. .
T Consensus 2 ~yR~f~e~D~~aL~ald~a~qr~~dP~fd~lperer~gr~~tSl~Alrfy~RsgHSFvA~~e~~~~~GfvLAQaVWQGdr 81 (161)
T PF09390_consen 2 RYRPFTEPDFAALQALDLAAQRRTDPAFDGLPEREREGRLSTSLAALRFYERSGHSFVAEDEGGELQGFVLAQAVWQGDR 81 (161)
T ss_dssp EEE---GGGHHHHHHC--------------------STTS---HHHHHHHHCCS--EEEE-ETTEEEEEEEEEEEE-SSS
T ss_pred cccccCcccHHHHHHHhhhccccccccccccccccccccccCCHHHhhhhhccCCcEEEEccCCceeeeeehhHHhcCCC
Confidence 46899999999998882111111 0001112221 223336778888 8899999998765443 3
Q ss_pred CceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCcc
Q 007903 512 KCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFP 557 (585)
Q Consensus 512 ~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~ 557 (585)
....+..|.+.|. +....-.-||..+. +-|...++++..+.
T Consensus 82 ptVlV~ri~~~~~-~~~~~~~GLLrAvv----KSAYDa~VYEv~l~ 122 (161)
T PF09390_consen 82 PTVLVRRILLAPG-EPEEVYEGLLRAVV----KSAYDAGVYEVHLH 122 (161)
T ss_dssp EEEEEEEE---EE-SSHHHHHHHHHHHH----HHHHHTT-SEEEE-
T ss_pred ceEEEEEeecCCC-CcHHHHHHHHHHHH----HhhhccceEEEEee
Confidence 3556666666554 55678888899888 88888888775443
No 195
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=59.77 E-value=30 Score=36.27 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=47.5
Q ss_pred CeEEEEeCCccCCCCC-h----HHHHHHHHHHHHCCCeEEEEeCc-hHHHHHHHHHcCCcccc
Q 007903 100 GTFVVIISGEIVSSPY-L----DPILKDIAFLHHLGIRFVLVPGT-HVQIDKLLSERGHEAKY 156 (585)
Q Consensus 100 k~iVIKlGGs~l~~~~-l----~~l~~~Ia~L~~~G~~vVlVhGg-g~~i~~~l~~~g~~~~~ 156 (585)
+.+|.-+.|.+++++. + +.+.+-|..|++.|+++.|+.+| ...+...++.+|+..-|
T Consensus 129 ~~i~~D~D~TL~~~~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yF 191 (303)
T PHA03398 129 HVIVFDLDSTLITDEEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYF 191 (303)
T ss_pred cEEEEecCCCccCCCCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccc
Confidence 6799999999999855 2 67888899999999999999866 66788889999987543
No 196
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=59.52 E-value=42 Score=35.86 Aligned_cols=59 Identities=19% Similarity=0.282 Sum_probs=42.0
Q ss_pred cccccccccCHHHHHHHHHHHHHcc-ccccCCHHHHHhcc------CeEEEEE-ECCeEEEEEEEee
Q 007903 449 EGTRTAKVTDLSGIKQIIQPLVESG-ALVRRTDEELLKAL------DSFYVVE-REGQIIACAALFP 507 (585)
Q Consensus 449 ~~IR~at~~D~~~I~~Li~~~~~~~-~~~~~~~e~l~~~i------~~~~Va~-~dg~IVG~~~l~~ 507 (585)
..+|++.+.|.+++.+|+..+..+- .....+.++++..+ -..||++ .+|+|-+|++++.
T Consensus 261 ~G~R~me~kDvp~V~~Ll~~yl~qf~la~~f~~eev~Hwf~p~e~VV~syVvesp~g~ITDF~SFy~ 327 (421)
T KOG2779|consen 261 PGLREMEEKDVPAVFRLLRNYLKQFELAPVFDEEEVEHWFLPRENVVYSYVVESPNGKITDFCSFYS 327 (421)
T ss_pred CCcccccccchHHHHHHHHHHHHheecccccCHHHhHhhcccccceEEEEEEECCCCcccceeeEEe
Confidence 4589999999999999987765443 33345677777665 1234555 4899999998863
No 197
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=59.15 E-value=4.7 Score=42.59 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=35.1
Q ss_pred eEEEEEECC----eEEEEEEEeeeccCCceEEeeEEEccCCcCCcHHHHHHHHHH
Q 007903 489 SFYVVEREG----QIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCI 539 (585)
Q Consensus 489 ~~~Va~~dg----~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~ 539 (585)
.|+|+.+-| .+|||.+=.. .+....-+.+|-+.|.||++|+|+.|+++--
T Consensus 235 lFYvl~~~~~~~~h~vGyFSKEK-~S~~~yNLaCILtLP~yQRrGYG~lLIdFSY 288 (395)
T COG5027 235 LFYVLTERGDTGCHLVGYFSKEK-ESEQDYNLACILTLPPYQRRGYGKLLIDFSY 288 (395)
T ss_pred EEEEEEEcCCcceeeeeeechhh-cccccCceEEEEecChhHhcccceEeeeeee
Confidence 455654432 3778755432 2233456889999999999999999998765
No 198
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=57.78 E-value=8.4 Score=44.39 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=26.3
Q ss_pred ceEEeeEEEccCCcCCcHHHHHHHHHHhh
Q 007903 513 CGEVAAIGVSPECRGQGQGDKLLGLCIWP 541 (585)
Q Consensus 513 ~aeI~~L~V~PeyRGkGIGk~LL~~~~~~ 541 (585)
-+.|-+|+|||+|++.|||++-++-+.+|
T Consensus 614 GaRIVRIAvhP~y~~MGYGsrAvqLL~~y 642 (1011)
T KOG2036|consen 614 GARIVRIAVHPEYQKMGYGSRAVQLLTDY 642 (1011)
T ss_pred CceEEEEEeccchhccCccHHHHHHHHHH
Confidence 35789999999999999999999998876
No 199
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=57.37 E-value=32 Score=28.09 Aligned_cols=39 Identities=26% Similarity=0.268 Sum_probs=26.4
Q ss_pred CeEEEEeCCccCCCCChHHHHHHHHHHHHCCCeEEEEeCch
Q 007903 100 GTFVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTH 140 (585)
Q Consensus 100 k~iVIKlGGs~l~~~~l~~l~~~Ia~L~~~G~~vVlVhGgg 140 (585)
.+.|+--||.-.+| .+.+...|..++..--.++|||||.
T Consensus 3 g~rVli~GgR~~~D--~~~i~~~Ld~~~~~~~~~~lvhGga 41 (71)
T PF10686_consen 3 GMRVLITGGRDWTD--HELIWAALDKVHARHPDMVLVHGGA 41 (71)
T ss_pred CCEEEEEECCcccc--HHHHHHHHHHHHHhCCCEEEEECCC
Confidence 45677778888876 4445555555554444688999998
No 200
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=55.49 E-value=42 Score=35.20 Aligned_cols=58 Identities=10% Similarity=0.117 Sum_probs=47.8
Q ss_pred CCeEEEEeCCccCCCCC-h----HHHHHHHHHHHHCCCeEEEEeCch-HHHHHHHHHcCCcccc
Q 007903 99 GGTFVVIISGEIVSSPY-L----DPILKDIAFLHHLGIRFVLVPGTH-VQIDKLLSERGHEAKY 156 (585)
Q Consensus 99 ~k~iVIKlGGs~l~~~~-l----~~l~~~Ia~L~~~G~~vVlVhGgg-~~i~~~l~~~g~~~~~ 156 (585)
.+.||.-+.|.+++++. . +.+.+.|..|++.|++++|+.+++ ..+...++++|+..-|
T Consensus 126 ~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YF 189 (301)
T TIGR01684 126 PHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYF 189 (301)
T ss_pred ceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCccc
Confidence 46899999999999865 2 788899999999999999998764 4577788999987543
No 201
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=54.60 E-value=11 Score=41.23 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=31.7
Q ss_pred CceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcc
Q 007903 512 KCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHIST 553 (585)
Q Consensus 512 ~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~ 553 (585)
..+.|.++.|||+||+-|+|..-+..+. +|..+..+.+
T Consensus 240 aaariarvvvhpdyr~dglg~~sv~~a~----ewI~eRriPE 277 (593)
T COG2401 240 AAARIARVVVHPDYRADGLGQLSVIAAL----EWIIERRIPE 277 (593)
T ss_pred hhhheeEEEeccccccCccchhHHHHHH----HHHHHhhChh
Confidence 3567999999999999999999999999 6666666654
No 202
>KOG3014 consensus Protein involved in establishing cohesion between sister chromatids during DNA replication [Replication, recombination and repair]
Probab=51.81 E-value=40 Score=34.30 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=23.9
Q ss_pred eEEeeEEEccCCcCCcHHHHHHHHHH
Q 007903 514 GEVAAIGVSPECRGQGQGDKLLGLCI 539 (585)
Q Consensus 514 aeI~~L~V~PeyRGkGIGk~LL~~~~ 539 (585)
+-|.++.|.+..|++||++.|++.+.
T Consensus 184 ~GIsRIWV~s~~Rr~gIAs~lldva~ 209 (257)
T KOG3014|consen 184 CGISRIWVSSLRRRKGIASLLLDVAR 209 (257)
T ss_pred eeeEEEEeehhhhhhhhHHHHHHHHH
Confidence 45788999999999999999999887
No 203
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=50.00 E-value=61 Score=34.67 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=41.8
Q ss_pred EECCeEEEEEEEeeec------cCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCC
Q 007903 494 EREGQIIACAALFPFF------KEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHI 551 (585)
Q Consensus 494 ~~dg~IVG~~~l~~~~------~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi 551 (585)
...+++|||+...|.. .-+..+|.-++||++-|+++++--|+.++- .++.-.|+
T Consensus 142 ~~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEIT----RRvnl~gI 201 (421)
T KOG2779|consen 142 KSSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREIT----RRVNLEGI 201 (421)
T ss_pred ecCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHH----HHhhhhhh
Confidence 3456999999876421 125789999999999999999999999998 55544444
No 204
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=48.83 E-value=20 Score=38.32 Aligned_cols=44 Identities=14% Similarity=0.317 Sum_probs=33.3
Q ss_pred eEEEEEEEeee---ccCCceEEeeEEEccCCcCCcHHHHHHHHHHhh
Q 007903 498 QIIACAALFPF---FKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWP 541 (585)
Q Consensus 498 ~IVG~~~l~~~---~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~ 541 (585)
.++|+..++.+ ++.-...|..|-+.|.||++|+|..|++.+.+.
T Consensus 199 ~~~gy~tiyk~y~yid~~R~RiSQmlilpPfq~~Glgs~l~E~i~r~ 245 (403)
T KOG2696|consen 199 AYVGYYTIYKFYEYIDRIRPRISQMLILPPFQGKGLGSQLYEAIARD 245 (403)
T ss_pred eeeeeEEEeehhhhhhhhhhhhheeEEeccccCCchHHHHHHHHHHh
Confidence 36677766532 223446678899999999999999999999843
No 205
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=48.60 E-value=1.5e+02 Score=28.04 Aligned_cols=60 Identities=13% Similarity=0.047 Sum_probs=44.1
Q ss_pred HHhhcCCeEEEEeCCccCCCCC---hHHHHHHHHHHHHCCCeEEEEeCch--HHHHHHHHHcCCc
Q 007903 94 LWAHRGGTFVVIISGEIVSSPY---LDPILKDIAFLHHLGIRFVLVPGTH--VQIDKLLSERGHE 153 (585)
Q Consensus 94 i~~~r~k~iVIKlGGs~l~~~~---l~~l~~~Ia~L~~~G~~vVlVhGgg--~~i~~~l~~~g~~ 153 (585)
+.++.-+.+|+-+.|.....+. +..+.+-|..|++.|++++|+.++. ..+..+++.+++.
T Consensus 20 ~~~~~v~~vv~D~Dgtl~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~ 84 (170)
T TIGR01668 20 LKKVGIKGVVLDKDNTLVYPDHNEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIP 84 (170)
T ss_pred HHHCCCCEEEEecCCccccCCCCCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCE
Confidence 3445568899999988876443 5777778888999999999999875 3445555677765
No 206
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=47.66 E-value=1.2e+02 Score=31.27 Aligned_cols=61 Identities=15% Similarity=0.072 Sum_probs=37.7
Q ss_pred CeEEEEEE-CCeEEEEEEEeeeccCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcc
Q 007903 488 DSFYVVER-EGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHIST 553 (585)
Q Consensus 488 ~~~~Va~~-dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~ 553 (585)
..++++.. ||+++||+...+....+...++-.--+|+ -=+|+-..|+..++ +.+++.|+..
T Consensus 180 ~~~~~~~~~dgki~af~~~~~~~~~~~~~~~~~k~~~~-a~~G~~e~l~~~~~----~~~~~~g~~~ 241 (299)
T PF09924_consen 180 LRGFVARVADGKIVAFAIGSPLGGRDGWSIDFEKADPD-APKGIYEFLNVEFA----EHLKAEGVEY 241 (299)
T ss_dssp -EEEEEEE-TTEEEEEEEEEEEE-TTEEEEEEEEE-TT--STTHHHHHHHHHH----HHS--TT--E
T ss_pred ceEEEEEECCCcEEEEEEEEEccCCccEEEEEEecCCC-CCCcHHHHHHHHHH----HhhhhCCceE
Confidence 45677777 99999999998754333444444444555 34688888888888 6666666654
No 207
>PTZ00063 histone deacetylase; Provisional
Probab=46.09 E-value=78 Score=35.06 Aligned_cols=63 Identities=17% Similarity=0.316 Sum_probs=50.4
Q ss_pred hhHHHHHHHHhh-hHHHhhcCCeEEEEeCCccCCCCC-------hHHHHHHHHHHHHCCCeEEEEeCchHH
Q 007903 80 DEQFVKWFREAW-PYLWAHRGGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQ 142 (585)
Q Consensus 80 ~~~~~~~~r~a~-~yi~~~r~k~iVIKlGGs~l~~~~-------l~~l~~~Ia~L~~~G~~vVlVhGgg~~ 142 (585)
++.|...|++.+ |-+..|+=..||+-.|.-++..+. .+...+-+..+.+.+.++++|-|||-.
T Consensus 231 D~~Y~~~f~~ii~~~i~~f~Pd~IvvqaG~D~~~~DpLg~l~Lt~~g~~~~~~~~~~~~~pil~l~gGGY~ 301 (436)
T PTZ00063 231 DDSFVDLFKPVISKCVEVYRPGAIVLQCGADSLTGDRLGRFNLTIKGHAACVEFVRSLNIPLLVLGGGGYT 301 (436)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEeCccCC
Confidence 678999999865 778999999999999999987643 355666566677778899999988743
No 208
>PRK14852 hypothetical protein; Provisional
Probab=42.12 E-value=75 Score=38.72 Aligned_cols=121 Identities=11% Similarity=0.113 Sum_probs=75.0
Q ss_pred cccc-cccCHHHHHHHHH-HHHHccccccCCHHHHHhcc-----CeEEEEEECCeEEEEEEEeeec--------------
Q 007903 451 TRTA-KVTDLSGIKQIIQ-PLVESGALVRRTDEELLKAL-----DSFYVVEREGQIIACAALFPFF-------------- 509 (585)
Q Consensus 451 IR~a-t~~D~~~I~~Li~-~~~~~~~~~~~~~e~l~~~i-----~~~~Va~~dg~IVG~~~l~~~~-------------- 509 (585)
||.| +.+|+..+..|.+ .+...+++.+.....+.... ...|++...++++++..+.+..
T Consensus 31 ~r~Aet~~e~~~~~~L~~~~Y~~~Gy~~~~ps~~~~~~~~~lp~t~~~i~k~~~~~l~T~t~~~ds~~~Gl~~D~lf~~e 110 (989)
T PRK14852 31 IKIAETPDEYTRAFRLVYEEYIRSGYLKPHPSRMYYNVWSILPATSVFIFKSYHDVLCTLTHIPDSGLFGLPMDTLYKPE 110 (989)
T ss_pred eeecCCHHHHHHHHHHHHHHHHHcCCCCcCcccccCCccccCCcceEEEeccCCcEEEEEEEecCCcccCcCHHHHHHHH
Confidence 4554 4677888888865 45667776543333222222 3457776667788887765321
Q ss_pred -------cCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcccCccceecccccccc--cCeeecCc
Q 007903 510 -------KEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHISTNGFPFLRGRTHSYYR--LKFNCSSK 576 (585)
Q Consensus 510 -------~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~~g~~~~~~~a~~YYr--lGF~~~~~ 576 (585)
....+|+.+++++|+.|.+-+=-.|++.+. +++...++.-. +..++.+-..||+ +||+..+.
T Consensus 111 Ld~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~----~y~~~~~~dd~-~i~VnPkH~~FY~r~l~f~~ig~ 181 (989)
T PRK14852 111 VDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMF----QYSMMSEVDDI-LVTVNPKHVKFYTDIFLFKPFGE 181 (989)
T ss_pred HHHHHHcCCeEEeeehheechhhcccchhHHHHHHHH----HHHHHcCCCeE-EEEECcchHHHHHHHhCCccccc
Confidence 125679999999988887655556666665 55555555432 3345566667885 89887653
No 209
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=39.91 E-value=2.1e+02 Score=29.19 Aligned_cols=52 Identities=15% Similarity=0.087 Sum_probs=39.6
Q ss_pred CCeEEEEEEEeeeccCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcc
Q 007903 496 EGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHIST 553 (585)
Q Consensus 496 dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~ 553 (585)
.|++|+.+.... ..+...-+. .+-+|++....+|+-.+-.=+ .+|++.|+.-
T Consensus 159 ~G~LvAVavtDv-L~dGlSsVY-~FydPd~s~~SLGt~~iL~~I----~~aq~~~l~y 210 (253)
T COG2935 159 EGKLVAVAVTDV-LPDGLSSVY-TFYDPDMSKRSLGTLSILDQI----AIAQRLGLPY 210 (253)
T ss_pred CCcEEEEEeeec-ccCcceeEE-EEeCCChhhhcchHHHHHHHH----HHHHHhCCCe
Confidence 789999988874 333444444 456999999999998877777 7888888764
No 210
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=38.43 E-value=1.1e+02 Score=32.28 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=40.7
Q ss_pred CCeEEEEeCCccCCCCC--hHHHHHHHHHHHHCCCeEEEEeCchH-HHHHHHHHcCCc
Q 007903 99 GGTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTHV-QIDKLLSERGHE 153 (585)
Q Consensus 99 ~k~iVIKlGGs~l~~~~--l~~l~~~Ia~L~~~G~~vVlVhGgg~-~i~~~l~~~g~~ 153 (585)
.|.|+.-+.|..+.... .+...+.|..|++.|+.+|+..|-.. .+..+++++++.
T Consensus 1 ~KLIftDLDGTLLd~~~~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~ 58 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEFNSYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLE 58 (302)
T ss_pred CcEEEEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 36889999999998544 56778889999999999999988632 234455555543
No 211
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=37.73 E-value=2e+02 Score=24.61 Aligned_cols=68 Identities=21% Similarity=0.263 Sum_probs=47.1
Q ss_pred HHHHh-hhHHHhhcCCeEEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcc
Q 007903 86 WFREA-WPYLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEA 154 (585)
Q Consensus 86 ~~r~a-~~yi~~~r~k~iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~ 154 (585)
.|++. ...+.+...+.+|+-+.+-..-|.. +..+.+-+..++..|.+++++ |-.+++.+.++..|+..
T Consensus 27 ~~~~~l~~~~~~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~-g~~~~v~~~l~~~gl~~ 96 (109)
T cd07041 27 QLQERLLEAISRRRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILT-GIRPEVAQTLVELGIDL 96 (109)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEE-eCCHHHHHHHHHhCCCh
Confidence 34443 2445444567899999877666544 666777777788888876665 55678899999888764
No 212
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=36.99 E-value=1.1e+02 Score=29.84 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=39.2
Q ss_pred EEEEeCCccCCCCC--hHHHHHHHHHHHHCCCeEEEEeCchHH-HHHHHHHcCCc
Q 007903 102 FVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGHE 153 (585)
Q Consensus 102 iVIKlGGs~l~~~~--l~~l~~~Ia~L~~~G~~vVlVhGgg~~-i~~~l~~~g~~ 153 (585)
|+.=+.|..+.++. .....+.|..|++.|++++++.|-.+. +...++.+++.
T Consensus 2 i~~DlDGTLL~~~~~~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 2 VFSDLDGTLLDSHSYDWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred EEEeCCCCCcCCCCCCcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 66778899997644 556778888899999999999998543 45566666654
No 213
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=36.86 E-value=1.2e+02 Score=31.99 Aligned_cols=64 Identities=19% Similarity=0.167 Sum_probs=43.6
Q ss_pred ChhHHHHHHHHhh-hHHHhhcCCeEEEEeCCccCCCCC----------hHHHHHHHHHHHH-CCCeEEEEeCchHH
Q 007903 79 EDEQFVKWFREAW-PYLWAHRGGTFVVIISGEIVSSPY----------LDPILKDIAFLHH-LGIRFVLVPGTHVQ 142 (585)
Q Consensus 79 ~~~~~~~~~r~a~-~yi~~~r~k~iVIKlGGs~l~~~~----------l~~l~~~Ia~L~~-~G~~vVlVhGgg~~ 142 (585)
.+..|...|++.+ |-+.+|+=..|||-.|--+...+. +..+.+.|..+.. .+.++|+|.+||-.
T Consensus 220 ~d~~y~~~~~~~l~~~~~~f~P~~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~~~~~a~~~~~~~v~vleGGY~ 295 (311)
T PF00850_consen 220 GDDEYLEAFEEILLPALEEFRPDLIVVSAGFDAHAGDPLGGLNLTPEGYRELTRRLKSLAKRHCIPVVSVLEGGYN 295 (311)
T ss_dssp BHHHHHHHHHHHHHHHHHHHT-SEEEEEE-STTBTTSTT-SEBB-HHHHHHHHHHHHTTHSHHSGCEEEEE-S-SS
T ss_pred chHHHHHHHhhccccchhcccCcEEEEccCcccchhccccCcCCCHHHHHHHHHHHHHHHHhcCCcEEEEECCCCC
Confidence 3678999999987 889999999999999999886532 3445555544332 12389999999743
No 214
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=35.88 E-value=1.1e+02 Score=29.77 Aligned_cols=54 Identities=19% Similarity=0.194 Sum_probs=41.5
Q ss_pred CeEEEEeCCccCCCCC--hHHHHHHHHHHHHCCCeEEEEeCchHH-HHHHHHHcCCc
Q 007903 100 GTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGHE 153 (585)
Q Consensus 100 k~iVIKlGGs~l~~~~--l~~l~~~Ia~L~~~G~~vVlVhGgg~~-i~~~l~~~g~~ 153 (585)
|.++.=+.|.++.+.. -+...+.|..|++.|++++++.|-... +...++.++++
T Consensus 4 kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (230)
T PRK01158 4 KAIAIDIDGTITDKDRRLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTS 60 (230)
T ss_pred eEEEEecCCCcCCCCCccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC
Confidence 6788899999997654 367888899999999999999987543 34455666654
No 215
>PLN02645 phosphoglycolate phosphatase
Probab=35.27 E-value=1.3e+02 Score=31.56 Aligned_cols=55 Identities=20% Similarity=0.323 Sum_probs=43.8
Q ss_pred CCeEEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeCch----HHHHHHHHHcCCc
Q 007903 99 GGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTH----VQIDKLLSERGHE 153 (585)
Q Consensus 99 ~k~iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhGgg----~~i~~~l~~~g~~ 153 (585)
-+.|++-+-|.++.... ++...+.|..|++.|++++++.+++ .++-+.++.+|++
T Consensus 28 ~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~ 87 (311)
T PLN02645 28 VETFIFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLN 87 (311)
T ss_pred CCEEEEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCC
Confidence 37999999999988655 7778899999999999999999976 2334445677775
No 216
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=34.99 E-value=1.2e+02 Score=30.91 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=42.7
Q ss_pred CCeEEEEeCCccCCCCC--hHHHHHHHHHHHHCCCeEEEEeCchH-HHHHHHHHcCCc
Q 007903 99 GGTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTHV-QIDKLLSERGHE 153 (585)
Q Consensus 99 ~k~iVIKlGGs~l~~~~--l~~l~~~Ia~L~~~G~~vVlVhGgg~-~i~~~l~~~g~~ 153 (585)
-|.++.=+.|.++.+.. .+...+-|..|++.|++++|+.|-.+ .+...++.+++.
T Consensus 4 ~kli~~DlDGTLl~~~~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHTYSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLE 61 (273)
T ss_pred ceEEEEcCcccCcCCCCcCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 47899999999997443 56677888889999999999998743 455667777765
No 217
>PTZ00346 histone deacetylase; Provisional
Probab=34.05 E-value=1.5e+02 Score=32.80 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=49.3
Q ss_pred ChhHHHHHHHHhh-hHHHhhcCCeEEEEeCCccCCCCC-------hHHHHHHHHHHHHCCCeEEEEeCchH
Q 007903 79 EDEQFVKWFREAW-PYLWAHRGGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHV 141 (585)
Q Consensus 79 ~~~~~~~~~r~a~-~yi~~~r~k~iVIKlGGs~l~~~~-------l~~l~~~Ia~L~~~G~~vVlVhGgg~ 141 (585)
.+..|...|++.+ |-+..|+=..|||-.|--+...+- .+.+.+-+..+.+.+.++++|-|||-
T Consensus 248 ~D~~Yl~~f~~ii~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~LT~~g~~~~~~~l~~~~~plv~vleGGY 318 (429)
T PTZ00346 248 TDFYYLGLFEHALHSIVRRYSPDAIVLQCGADSLAGDRLGLLNLSSFGHGQCVQAVRDLGIPMLALGGGGY 318 (429)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCEEEEECCccCCCCCCCCCceeCHHHHHHHHHHHHhcCCCEEEEeCCcC
Confidence 3678999999864 778999999999999999886532 35555555566677889999999873
No 218
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=32.93 E-value=2.3e+02 Score=25.87 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHCCCeEEEEeCch----------------HHHHHHHHHcCCc
Q 007903 116 LDPILKDIAFLHHLGIRFVLVPGTH----------------VQIDKLLSERGHE 153 (585)
Q Consensus 116 l~~l~~~Ia~L~~~G~~vVlVhGgg----------------~~i~~~l~~~g~~ 153 (585)
.+.+.+-|..|++.|++++|+..+. ..+...++.+++.
T Consensus 29 ~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 82 (147)
T TIGR01656 29 RPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVA 82 (147)
T ss_pred cCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCc
Confidence 4566777888999999999999864 3455667788875
No 219
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=32.38 E-value=1.4e+02 Score=26.58 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=26.7
Q ss_pred CCceEEeeEEEccCCcC-CcHHHHHHHHHH
Q 007903 511 EKCGEVAAIGVSPECRG-QGQGDKLLGLCI 539 (585)
Q Consensus 511 ~~~aeI~~L~V~PeyRG-kGIGk~LL~~~~ 539 (585)
+..+++..++|.+..|| .|++..+++.+.
T Consensus 37 ~~v~yLdKFav~~~~~gl~gv~D~vf~~m~ 66 (108)
T cd04266 37 EKIAYLDKFAVLPKAQGSDGIADILFNAML 66 (108)
T ss_pred CCceEEEEEEEccccccccchHHHHHHHHH
Confidence 46789999999999997 899999999988
No 220
>PTZ00174 phosphomannomutase; Provisional
Probab=32.29 E-value=76 Score=31.89 Aligned_cols=42 Identities=14% Similarity=0.261 Sum_probs=35.1
Q ss_pred CCeEEEEeCCccCCCCC--hHHHHHHHHHHHHCCCeEEEEeCch
Q 007903 99 GGTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTH 140 (585)
Q Consensus 99 ~k~iVIKlGGs~l~~~~--l~~l~~~Ia~L~~~G~~vVlVhGgg 140 (585)
-|.|+.=+.|.++.++. -+...+.|..+++.|+++||..|-.
T Consensus 5 ~klia~DlDGTLL~~~~~is~~~~~ai~~l~~~Gi~~viaTGR~ 48 (247)
T PTZ00174 5 KTILLFDVDGTLTKPRNPITQEMKDTLAKLKSKGFKIGVVGGSD 48 (247)
T ss_pred CeEEEEECcCCCcCCCCCCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 37889999999998755 3667888999999999999998853
No 221
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=32.20 E-value=1.2e+02 Score=30.42 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=45.0
Q ss_pred CCeEEEEeCCccCCCCC--hHHHHHHHHHHHHCCCeEEEEeCchH-HHHHHHHHcCCcc
Q 007903 99 GGTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTHV-QIDKLLSERGHEA 154 (585)
Q Consensus 99 ~k~iVIKlGGs~l~~~~--l~~l~~~Ia~L~~~G~~vVlVhGgg~-~i~~~l~~~g~~~ 154 (585)
-|.+++=+.|..+.+.. -+...+.|..+++.|++++|+.|-.. .+...++.+++..
T Consensus 3 ~kli~~DlDGTLl~~~~~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 3 IKLLAFDLDGTLLDSNKTISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDG 61 (264)
T ss_pred eeEEEEcCCCCccCCCCccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCc
Confidence 36788999999998765 47778888889999999999999855 4566777888764
No 222
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=31.88 E-value=1.4e+02 Score=30.07 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=41.7
Q ss_pred CeEEEEeCCccCCCCC--hHHHHHHHHHHHHCCCeEEEEeCchHH-HHHHHHHcCCc
Q 007903 100 GTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGHE 153 (585)
Q Consensus 100 k~iVIKlGGs~l~~~~--l~~l~~~Ia~L~~~G~~vVlVhGgg~~-i~~~l~~~g~~ 153 (585)
|.++.=+.|.++.++. -+...+.|..|++.|++++++.|=... +...++++++.
T Consensus 3 kli~~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (272)
T PRK15126 3 RLAAFDMDGTLLMPDHHLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLD 59 (272)
T ss_pred cEEEEeCCCcCcCCCCcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCC
Confidence 6889999999998654 467788899999999999999886443 34455666654
No 223
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=31.51 E-value=1.3e+02 Score=30.04 Aligned_cols=54 Identities=17% Similarity=0.312 Sum_probs=41.8
Q ss_pred CeEEEEeCCccCCCCC--hHHHHHHHHHHHHCCCeEEEEeCchHH-HHHHHHHcCCc
Q 007903 100 GTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGHE 153 (585)
Q Consensus 100 k~iVIKlGGs~l~~~~--l~~l~~~Ia~L~~~G~~vVlVhGgg~~-i~~~l~~~g~~ 153 (585)
|.|+.=+.|.++.++. -+...+.|..|++.|++++|..|=... +...++.+++.
T Consensus 4 kli~~DlDGTLl~~~~~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (272)
T PRK10530 4 RVIALDLDGTLLTPKKTILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALALD 60 (272)
T ss_pred cEEEEeCCCceECCCCccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 7889999999997654 466788899999999999999886543 34456666654
No 224
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=28.96 E-value=1.6e+02 Score=29.58 Aligned_cols=54 Identities=19% Similarity=0.291 Sum_probs=41.8
Q ss_pred CeEEEEeCCccCCCCC-h-HHHHHHHHHHHHCCCeEEEEeCchHH-HHHHHHHcCCc
Q 007903 100 GTFVVIISGEIVSSPY-L-DPILKDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGHE 153 (585)
Q Consensus 100 k~iVIKlGGs~l~~~~-l-~~l~~~Ia~L~~~G~~vVlVhGgg~~-i~~~l~~~g~~ 153 (585)
|.++.-+.|.++.+.. + +...+.|..|++.|++++|+.|-... +...++.+++.
T Consensus 4 kli~~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 60 (270)
T PRK10513 4 KLIAIDMDGTLLLPDHTISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHME 60 (270)
T ss_pred EEEEEecCCcCcCCCCccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCC
Confidence 6888999999998654 3 67788899999999999999886443 44456666654
No 225
>PRK10976 putative hydrolase; Provisional
Probab=28.59 E-value=94 Score=31.24 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=40.3
Q ss_pred CeEEEEeCCccCCCCC--hHHHHHHHHHHHHCCCeEEEEeCchHH-HHHHHHHcCCc
Q 007903 100 GTFVVIISGEIVSSPY--LDPILKDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGHE 153 (585)
Q Consensus 100 k~iVIKlGGs~l~~~~--l~~l~~~Ia~L~~~G~~vVlVhGgg~~-i~~~l~~~g~~ 153 (585)
|.++.=+.|.++.+.. -+...+.|..|++.|++++|..|=... +...++.+++.
T Consensus 3 kli~~DlDGTLl~~~~~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~ 59 (266)
T PRK10976 3 QVVASDLDGTLLSPDHTLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIK 59 (266)
T ss_pred eEEEEeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC
Confidence 6888999999997644 367788899999999999999886433 23344555543
No 226
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=28.46 E-value=1.1e+02 Score=31.66 Aligned_cols=62 Identities=24% Similarity=0.185 Sum_probs=44.8
Q ss_pred EEEEECCeEEEEEEEeeeccCCceEEe--eEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCc
Q 007903 491 YVVEREGQIIACAALFPFFKEKCGEVA--AIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHIS 552 (585)
Q Consensus 491 ~Va~~dg~IVG~~~l~~~~~~~~aeI~--~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~ 552 (585)
.|+..+|+++++-.+.....+....++ .-.++|+++..-.|+-||=.=++.|.+.|++++-.
T Consensus 176 ~vL~l~~~P~Aiqlv~k~es~~wv~~D~iNgG~Dp~~~~~SpGSiL~w~Ni~~A~~~~~~~~k~ 239 (264)
T PF07395_consen 176 SVLFLNGQPCAIQLVYKVESPKWVYFDYINGGYDPECRDFSPGSILMWLNIQDAWEYCRAQGKP 239 (264)
T ss_pred eEEEECCcceEEEEEEEecCCCeEEEecccCccCcccccCCCccEEEEeeHHHHHHHHHHhCCc
Confidence 467789999999888754444444333 45789999999999999755554444777777754
No 227
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=28.38 E-value=1.3e+02 Score=27.46 Aligned_cols=41 Identities=12% Similarity=0.291 Sum_probs=31.9
Q ss_pred CeEEEEeCCccCCCCC--------hHHHHHHHHHHHHCCCeEEEEeCch
Q 007903 100 GTFVVIISGEIVSSPY--------LDPILKDIAFLHHLGIRFVLVPGTH 140 (585)
Q Consensus 100 k~iVIKlGGs~l~~~~--------l~~l~~~Ia~L~~~G~~vVlVhGgg 140 (585)
|.|++=+.|.++.+.+ .....+.|..|++.|++++++.|=.
T Consensus 2 K~i~~DiDGTL~~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~ 50 (126)
T TIGR01689 2 KRLVMDLDNTITLTENGDYANVAPILAVIEKLRHYKALGFEIVISSSRN 50 (126)
T ss_pred CEEEEeCCCCcccCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 6889999999986421 2577777888888999988888753
No 228
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=28.26 E-value=1.9e+02 Score=28.03 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=38.4
Q ss_pred CeEEEEeCCccCCCCC-h-HHHHHHHHHHHHCCCeEEEEeCchHH-HHHHHHHcCC
Q 007903 100 GTFVVIISGEIVSSPY-L-DPILKDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGH 152 (585)
Q Consensus 100 k~iVIKlGGs~l~~~~-l-~~l~~~Ia~L~~~G~~vVlVhGgg~~-i~~~l~~~g~ 152 (585)
|.++.=+.|.++.+.. + +...+.|..|++.|++++++.|-.+. +..+++.+++
T Consensus 2 k~v~~DlDGTLl~~~~~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~ 57 (215)
T TIGR01487 2 KLVAIDIDGTLTEPNRMISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGT 57 (215)
T ss_pred cEEEEecCCCcCCCCcccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCC
Confidence 5788889999997644 3 67788899999999999999987432 3333344443
No 229
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics]
Probab=27.70 E-value=2.3e+02 Score=30.75 Aligned_cols=66 Identities=9% Similarity=0.220 Sum_probs=51.7
Q ss_pred ChhHHHHHHHH-hhhHHHhhcCCeEEEEeCCccCCCCC-------hHHHHHHHHHHHHCCCeEEEEeCchHHHH
Q 007903 79 EDEQFVKWFRE-AWPYLWAHRGGTFVVIISGEIVSSPY-------LDPILKDIAFLHHLGIRFVLVPGTHVQID 144 (585)
Q Consensus 79 ~~~~~~~~~r~-a~~yi~~~r~k~iVIKlGGs~l~~~~-------l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~ 144 (585)
.++.+-..|+- ..|-+..|+=..||+.+|+-.|..+. ++...+-+...++.+..+.+|=|||-.+.
T Consensus 232 dD~sy~~if~pIi~~v~e~f~P~AiVLQCGaDSL~gDRlgcFnLsi~Gh~~Cv~fvksfn~pllvlGGGGYT~r 305 (425)
T KOG1342|consen 232 DDESYESIFKPIISKVMERFQPEAIVLQCGADSLAGDRLGCFNLSIKGHAECVKFVKSFNLPLLVLGGGGYTLR 305 (425)
T ss_pred CcHHHHHHHHHHHHHHHHHhCCceEEEEcCCccccCCccceeeecchhHHHHHHHHHHcCCcEEEecCCccchh
Confidence 36778888887 44678889999999999999998654 57888888888888887777766664433
No 230
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=27.32 E-value=1.6e+02 Score=26.03 Aligned_cols=53 Identities=19% Similarity=0.299 Sum_probs=36.3
Q ss_pred eEEEEeCCccCCC-----C----C-hHHHHHHHHHHHHCCCeEEEEeCch---------HHHHHHHHHcCCc
Q 007903 101 TFVVIISGEIVSS-----P----Y-LDPILKDIAFLHHLGIRFVLVPGTH---------VQIDKLLSERGHE 153 (585)
Q Consensus 101 ~iVIKlGGs~l~~-----~----~-l~~l~~~Ia~L~~~G~~vVlVhGgg---------~~i~~~l~~~g~~ 153 (585)
.+++-++|.++.. + . ...+.+-|..|++.|++++|+.++. ..+...++.+++.
T Consensus 2 ~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~ 73 (132)
T TIGR01662 2 GVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP 73 (132)
T ss_pred EEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC
Confidence 4566666766631 0 1 3566777778889999999998875 3456677777765
No 231
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=27.30 E-value=1.9e+02 Score=29.41 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=40.6
Q ss_pred CeEEEEeCCccCCCCC-h-HHHHHHHHHHHHCCCeEEEEeCchHH-HHHHHHHcCC
Q 007903 100 GTFVVIISGEIVSSPY-L-DPILKDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGH 152 (585)
Q Consensus 100 k~iVIKlGGs~l~~~~-l-~~l~~~Ia~L~~~G~~vVlVhGgg~~-i~~~l~~~g~ 152 (585)
+.|+.=+.|.++.++. + +...+.|..|++.|+++||..|-... +...++++++
T Consensus 8 ~lI~~DlDGTLL~~~~~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~ 63 (271)
T PRK03669 8 LLIFTDLDGTLLDSHTYDWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGL 63 (271)
T ss_pred eEEEEeCccCCcCCCCcCcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCC
Confidence 5788899999998654 3 67778899999999999999987532 3445556655
No 232
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=25.73 E-value=2.1e+02 Score=31.27 Aligned_cols=62 Identities=16% Similarity=0.087 Sum_probs=39.3
Q ss_pred ChhHHHHHHHHhhhHHHhhcCCeEEEEeCCcc--------CCCCChHHHHHHHHH-HHHCCCeEEEEeCch
Q 007903 79 EDEQFVKWFREAWPYLWAHRGGTFVVIISGEI--------VSSPYLDPILKDIAF-LHHLGIRFVLVPGTH 140 (585)
Q Consensus 79 ~~~~~~~~~r~a~~yi~~~r~k~iVIKlGGs~--------l~~~~l~~l~~~Ia~-L~~~G~~vVlVhGgg 140 (585)
++++.+..+.+.+..-+.+++++++|--|+.. |++..-..+-..|+. +...|.+|+++||-+
T Consensus 165 ~~~~i~~~v~~~~~~~~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~ 235 (390)
T TIGR00521 165 EPETIVKAAEREFSPKEDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPV 235 (390)
T ss_pred CHHHHHHHHHHHHhhccccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCC
Confidence 56666666666543324478899888877652 232222234444554 677899999999875
No 233
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=25.65 E-value=1.7e+02 Score=33.41 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=48.1
Q ss_pred eEEEEEECCeEEEEEEEeeeccCCceEEeeEEEccCCcCCcHHHHHHHHHHhhhHHHHHHcCCcc
Q 007903 489 SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLGLCIWPLLSETRYDHIST 553 (585)
Q Consensus 489 ~~~Va~~dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRGkGIGk~LL~~~~~~a~~~A~~~gi~~ 553 (585)
.+.+.+.+|+|+||+.+.+........++-+--+|+.-. |+=..|+.+++ .++|++|++.
T Consensus 394 ~va~~~~~g~VvaFa~l~~~~~~~~~SlDlMR~sp~ap~-g~mdfLf~~li----~~aKe~G~~~ 453 (538)
T COG2898 394 PVAAVDNEGEVVAFANLMPTGGKEGYSLDLMRRSPDAPN-GTMDFLFSELI----LWAKEEGYQR 453 (538)
T ss_pred eeeEEcCCCCeEEEEeecccCCcceeEEEeeecCCCCCc-hHHHHHHHHHH----HHHHHcCCeE
Confidence 345667789999999999754455667877888888764 88888888888 9999999987
No 234
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=25.52 E-value=4.7e+02 Score=23.25 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=34.5
Q ss_pred eEEEEeCCccCCCC--------------ChHHHHHHHHHHHHCCCeEEEEeCc-hHH-HHHHHHHcC
Q 007903 101 TFVVIISGEIVSSP--------------YLDPILKDIAFLHHLGIRFVLVPGT-HVQ-IDKLLSERG 151 (585)
Q Consensus 101 ~iVIKlGGs~l~~~--------------~l~~l~~~Ia~L~~~G~~vVlVhGg-g~~-i~~~l~~~g 151 (585)
.+|+=|.|.++.++ -.+.+.+-|..|++.|+++.|+.++ .+. +...++..+
T Consensus 2 li~~DlD~Tl~~~~~~~~~~~~~~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~ 68 (128)
T TIGR01681 2 VIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFE 68 (128)
T ss_pred EEEEeCCCCCCCCCcccccCCcchhhHHHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhcc
Confidence 45556666666552 1457777788888999999999998 443 344556655
No 235
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=25.33 E-value=1.1e+02 Score=30.33 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=27.7
Q ss_pred HHHHHHHHHHCCCeEEEEeCchH-HHHHHHHHcCCccc
Q 007903 119 ILKDIAFLHHLGIRFVLVPGTHV-QIDKLLSERGHEAK 155 (585)
Q Consensus 119 l~~~Ia~L~~~G~~vVlVhGgg~-~i~~~l~~~g~~~~ 155 (585)
..+-++.+++.|++++||+||-. .+..+.+++|+...
T Consensus 82 a~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~ 119 (212)
T COG0560 82 AEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYV 119 (212)
T ss_pred HHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchh
Confidence 44445567889999999999966 56777788887643
No 236
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=24.92 E-value=2.2e+02 Score=28.18 Aligned_cols=52 Identities=21% Similarity=0.341 Sum_probs=37.5
Q ss_pred EEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeCchH-HHHHHHHHcCCc
Q 007903 102 FVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHV-QIDKLLSERGHE 153 (585)
Q Consensus 102 iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhGgg~-~i~~~l~~~g~~ 153 (585)
|+.=+.|.++.+.. .....+.|..|++.|+++|++.|-.+ .+...++++|+.
T Consensus 2 i~~DlDGTLl~~~~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 2 IFTDLDGTLLPPGYEPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVE 55 (225)
T ss_pred EEEeCCCCCcCCCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 56677888887433 56778889999999999999987643 344455666653
No 237
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=24.62 E-value=1.6e+02 Score=29.62 Aligned_cols=54 Identities=9% Similarity=0.180 Sum_probs=40.0
Q ss_pred CeEEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeCch----HHHHHHHHHcCCc
Q 007903 100 GTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTH----VQIDKLLSERGHE 153 (585)
Q Consensus 100 k~iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhGgg----~~i~~~l~~~g~~ 153 (585)
+.+++-+-|.++.... +....+.|..|++.|.+++++.+++ ..+...++.+|++
T Consensus 2 ~~~~~D~DGtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~ 60 (249)
T TIGR01457 2 KGYLIDLDGTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIP 60 (249)
T ss_pred CEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 4677778888887654 6667888889999999999999843 2345556677765
No 238
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=22.68 E-value=4.6e+02 Score=26.09 Aligned_cols=53 Identities=23% Similarity=0.229 Sum_probs=27.5
Q ss_pred cHHHHHHHHcCCCeEEEcCCcc-CCCCceeee-----ChHHHHHHHHHHcCCCEEEEeeccc
Q 007903 240 DVTRMRERLDGGCLVILSNLGY-SSSGEVLNC-----NTYEVATACALAIEADKLICIIDGP 295 (585)
Q Consensus 240 ~~~~I~~lL~~G~IPVi~~v~~-~~~G~~~ni-----d~D~lAa~lA~~L~AdkLIilTDV~ 295 (585)
....++++++...+.|+. +|- -.-|--+-+ -++.+|..+|..++. .+++--++
T Consensus 5 t~~ei~~~~~~~~~vilP-vGs~EqHGpHLPlgtD~~ia~~~a~~~a~~~~~--~lv~P~i~ 63 (237)
T PF02633_consen 5 TWPEIEEALKRDDVVILP-VGSTEQHGPHLPLGTDTLIAEAVAERAAERLGE--ALVLPPIP 63 (237)
T ss_dssp -HHHHHHHHCC-SEEEEE-E--B--BTTTBBTTHHHHHHHHHHHHHHHHHTH--EEE---B-
T ss_pred CHHHHHHHhcCCCEEEEe-eecccccCCCccchHHHHHHHHHHHHHHHHCCc--EEEeCCCc
Confidence 345677887877777765 222 222322333 346678888888886 55554444
No 239
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=22.40 E-value=5.2e+02 Score=22.49 Aligned_cols=72 Identities=18% Similarity=0.245 Sum_probs=51.6
Q ss_pred HHHHHHhhh-HHHhhcCCeEEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHcCCcccc
Q 007903 84 VKWFREAWP-YLWAHRGGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKY 156 (585)
Q Consensus 84 ~~~~r~a~~-yi~~~r~k~iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhGgg~~i~~~l~~~g~~~~~ 156 (585)
+..|++... ++.+-..+.+||-+.+-..-|.. +..++.....++..|.+++|+ |-.|.+.+.+...|+...+
T Consensus 28 a~~~~e~~~~~~~~~~~~~ivIDls~v~~~dS~gl~~L~~~~~~~~~~g~~~~l~-~i~p~v~~~~~~~gl~~~~ 101 (117)
T COG1366 28 APALKETLLEVIAASGARGLVIDLSGVDFMDSAGLGVLVALLKSARLRGVELVLV-GIQPEVARTLELTGLDKSF 101 (117)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEECCCCceechHHHHHHHHHHHHHHhcCCeEEEE-eCCHHHHHHHHHhCchhhc
Confidence 334555433 55565566689888887665544 778888888888889776666 6778999999999987543
No 240
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=22.34 E-value=5.7e+02 Score=27.77 Aligned_cols=92 Identities=15% Similarity=-0.053 Sum_probs=48.1
Q ss_pred cccCHHHHHHHHHHHHHccccccC-C---HHHHHhcc---CeEEEEEECCeEEEEEEEeeeccCCceEEeeEEEccCCcC
Q 007903 455 KVTDLSGIKQIIQPLVESGALVRR-T---DEELLKAL---DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRG 527 (585)
Q Consensus 455 t~~D~~~I~~Li~~~~~~~~~~~~-~---~e~l~~~i---~~~~Va~~dg~IVG~~~l~~~~~~~~aeI~~L~V~PeyRG 527 (585)
+++|++.+..++..........+. + .+.+.+.+ -.++++..+|++||++.+... ++..+=.......++.+
T Consensus 211 ~~~~~~~f~~~Y~~Ty~k~~~~~yLt~~FF~~l~~~m~~~~~l~~A~~~g~~Va~aL~l~~--~~~LyGRYwG~~~~~~~ 288 (370)
T PF04339_consen 211 TDEDWDRFYRLYQNTYAKRWGRPYLTREFFEQLAETMPEQVVLVVARRDGQPVAFALCLRG--DDTLYGRYWGCDEEIPF 288 (370)
T ss_pred CHHHHHHHHHHHHHHHHhhCCChhhcHHHHHHHHHhCcCCEEEEEEEECCeEEEEEEEEEe--CCEEEEeeecccccccC
Confidence 455667777776555444322221 2 23333334 245677889999999887642 22332222233444444
Q ss_pred CcHHHHHHHHHHhhhHHHHHHcCCcc
Q 007903 528 QGQGDKLLGLCIWPLLSETRYDHIST 553 (585)
Q Consensus 528 kGIGk~LL~~~~~~a~~~A~~~gi~~ 553 (585)
.-.=- ..=..+ ++|.++|++.
T Consensus 289 LHFe~-cYYq~I----e~aI~~Gl~~ 309 (370)
T PF04339_consen 289 LHFEL-CYYQGI----EYAIEHGLRR 309 (370)
T ss_pred cchHH-HHHHHH----HHHHHcCCCE
Confidence 33211 111233 7888888876
No 241
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=20.46 E-value=2.3e+02 Score=28.89 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=41.5
Q ss_pred CCeEEEEeCCccCCCCC-hHHHHHHHHHHHHCCCeEEEEeCchH----HHHHHHHHcCCcc
Q 007903 99 GGTFVVIISGEIVSSPY-LDPILKDIAFLHHLGIRFVLVPGTHV----QIDKLLSERGHEA 154 (585)
Q Consensus 99 ~k~iVIKlGGs~l~~~~-l~~l~~~Ia~L~~~G~~vVlVhGgg~----~i~~~l~~~g~~~ 154 (585)
-+.|++=+-|.++..+. +....+.|..|++.|+++++|.++.+ ..-..++++|+..
T Consensus 2 ~~~~~~D~DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~ 62 (279)
T TIGR01452 2 AQGFIFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNG 62 (279)
T ss_pred ccEEEEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCC
Confidence 46788888888887655 66778888889999999999999753 2234456777753
No 242
>PF11869 DUF3389: Protein of unknown function (DUF3389); InterPro: IPR021811 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=20.37 E-value=62 Score=26.76 Aligned_cols=34 Identities=26% Similarity=0.522 Sum_probs=26.2
Q ss_pred EEEEeCCccCCCCChHHHHHHHHHHHHCCCeEEEEeCch
Q 007903 102 FVVIISGEIVSSPYLDPILKDIAFLHHLGIRFVLVPGTH 140 (585)
Q Consensus 102 iVIKlGGs~l~~~~l~~l~~~Ia~L~~~G~~vVlVhGgg 140 (585)
+|||+.|+.++ +..-+++|.++. |-.+++..||+
T Consensus 17 v~vrL~~~~vt---LqA~~D~I~li~--~anvi~A~g~~ 50 (75)
T PF11869_consen 17 VVVRLNGSHVT---LQAQVDDITLIG--GANVIIANGGE 50 (75)
T ss_pred EEEEECCCcEE---EEEeeeehhhcC--CCcEEEEeCcc
Confidence 78999998643 556778888775 77888888885
Done!