BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007904
(585 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|B Chain B, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|C Chain C, Crystal Structure Of A Human Malic Enzyme
Length = 575
Score = 539 bits (1389), Expect = e-153, Method: Compositional matrix adjust.
Identities = 265/534 (49%), Positives = 352/534 (65%), Gaps = 3/534 (0%)
Query: 49 VARDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMME 108
+ R+P NK LAFT +ER + GLLPP+ SQ++Q +++ + +Y+ +M+
Sbjct: 29 LTRNPHLNKDLAFTLEERQQLNIHGLLPPSFNSQEIQVLRVVKNFEHLNSDFDRYLLLMD 88
Query: 109 LEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVL 168
L++RNE+LFY++L ++E+ +P+VYTPTVG ACQ+Y +FR+P+GL+I++ ++G I VL
Sbjct: 89 LQDRNEKLFYRVLTSDIEKFMPIVYTPTVGLACQQYSLVFRKPRGLFITIHDRGHIASVL 148
Query: 169 KNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGT 228
WPE I+ IVVTDGERILGLGDLGC GMGIPVGKLALYTA GG+ P CLP+ +DVGT
Sbjct: 149 NAWPEDVIKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGMNPQECLPVILDVGT 208
Query: 229 NNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLA 288
NE+LLKD YIGLRQRR G EY + LDEFM AV YG LIQFEDFAN NAF LL
Sbjct: 209 ENEELLKDPLYIGLRQRRVRGSEYDDFLDEFMEAVSSKYGMNCLIQFEDFANVNAFRLLN 268
Query: 289 KYGTTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEI 348
KY + FNDDIQ L++ LF GAGEA GIA LI + +
Sbjct: 269 KYRNQYCTFNDDIQGTASVAVAGLLAALRITKNKLSDQTILFQGAGEAALGIAHLIVMAL 328
Query: 349 SKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTI 408
K+ P E+ KKI LVDSKGLIV R SL K+ +AHEHE + NL V+ IKPT
Sbjct: 329 EKE-GLPKEKAIKKIWLVDSKGLIVKGRA-SLTQEKEKFAHEHEEMKNLEAIVQEIKPTA 386
Query: 409 LIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP 468
LIG + +G F++++++ MA+FNE+P+I ALSNPTS++EC+AE+ Y +KGRAIFASGSP
Sbjct: 387 LIGVAAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECSAEQCYKITKGRAIFASGSP 446
Query: 469 FDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFE 527
FDP NG+ PGQ NN+Y+FPG LG+V G ++ D++ L +E +A+QV++++ E
Sbjct: 447 FDPVTLPNGQTLYPGQGNNSYVFPGVALGVVACGLRQITDNIFLTTAEVIAQQVSDKHLE 506
Query: 528 KGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPVY 581
+G +YPP + IR Y+ AT P PQN S MY+ Y
Sbjct: 507 EGRLYPPLNTIRDVSLKIAEKIVKDAYQEKTATVYPEPQNKEAFVRSQMYSTDY 560
>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|B Chain B, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|C Chain C, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|D Chain D, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 554
Score = 526 bits (1356), Expect = e-149, Method: Compositional matrix adjust.
Identities = 251/523 (47%), Positives = 346/523 (66%), Gaps = 6/523 (1%)
Query: 52 DPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEE 111
+PR NKG+AFT +ER L+GLLPP + +Q +Q + ++++ PL+KY+ +M ++E
Sbjct: 12 NPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLEKYIYIMGIQE 71
Query: 112 RNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNW 171
RNE+LFY++L D++E L+P+VYTPTVG AC +YG IFRRP+GL+IS+ ++G + ++ NW
Sbjct: 72 RNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNW 131
Query: 172 PERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNE 231
PE ++ +VVTDGERILGLGDLG GMGIPVGKL LYTA GIRP CLP+ +DVGT+N
Sbjct: 132 PENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDQCLPVCIDVGTDNI 191
Query: 232 QLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYG 291
LLKD FY+GL Q+R Q+Y +L+DEFM A+ YG LIQFEDF NHNAF L KY
Sbjct: 192 ALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAFRFLRKYR 251
Query: 292 TTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQ 351
+ FNDDIQ ++EH+ LFLGAGEA GIA LI + + +
Sbjct: 252 EKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVEN 311
Query: 352 TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAVKVIKPTI 408
+ +E +KKI + D GL+V RK + +++P+ H E P + DAV ++KP+
Sbjct: 312 GLSE-QEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIP-DTFEDAVNILKPST 369
Query: 409 LIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP 468
+IG +G GR FT +VI AMAS NE+P+I ALSNPT+Q+ECTAEEAYT ++GR +FASGSP
Sbjct: 370 IIGVAGAGRLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSP 429
Query: 469 FDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFE 527
F P + +G+VF PGQ NN YIFPG L +++ + D + L A++AL Q+T+E
Sbjct: 430 FGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLTDEELA 489
Query: 528 KGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVK 570
+G +YPP +NI+ Y +A P P++ K
Sbjct: 490 QGRLYPPLANIQEVSINIAIKVTEYLYANKMAFVYPEPEDKAK 532
>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver
pdb|1GQ2|B Chain B, Malic Enzyme From Pigeon Liver
pdb|1GQ2|C Chain C, Malic Enzyme From Pigeon Liver
pdb|1GQ2|D Chain D, Malic Enzyme From Pigeon Liver
pdb|1GQ2|E Chain E, Malic Enzyme From Pigeon Liver
pdb|1GQ2|F Chain F, Malic Enzyme From Pigeon Liver
pdb|1GQ2|G Chain G, Malic Enzyme From Pigeon Liver
pdb|1GQ2|H Chain H, Malic Enzyme From Pigeon Liver
pdb|1GQ2|I Chain I, Malic Enzyme From Pigeon Liver
pdb|1GQ2|J Chain J, Malic Enzyme From Pigeon Liver
pdb|1GQ2|K Chain K, Malic Enzyme From Pigeon Liver
pdb|1GQ2|L Chain L, Malic Enzyme From Pigeon Liver
pdb|1GQ2|M Chain M, Malic Enzyme From Pigeon Liver
pdb|1GQ2|N Chain N, Malic Enzyme From Pigeon Liver
pdb|1GQ2|O Chain O, Malic Enzyme From Pigeon Liver
pdb|1GQ2|P Chain P, Malic Enzyme From Pigeon Liver
Length = 555
Score = 521 bits (1342), Expect = e-148, Method: Compositional matrix adjust.
Identities = 259/537 (48%), Positives = 342/537 (63%), Gaps = 3/537 (0%)
Query: 49 VARDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMME 108
V RDP NKG AFT +ER + GLLPP + Q Q ++ + + L +Y+ +
Sbjct: 6 VLRDPHLNKGXAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYILLXS 65
Query: 109 LEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVL 168
L++RNE+LFYK+L ++E P+VYTPTVG ACQ YG FRRP+GL+I++ ++G I L
Sbjct: 66 LQDRNEKLFYKVLTSDIERFXPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATXL 125
Query: 169 KNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGT 228
++WPE I+ IVVTDGERILGLGDLGC G GIPVGKLALYTA GG++P CLP+ +DVGT
Sbjct: 126 QSWPESVIKAIVVTDGERILGLGDLGCYGXGIPVGKLALYTACGGVKPHQCLPVXLDVGT 185
Query: 229 NNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLA 288
+NE LLKD YIGLR +R GQ Y +LLDEF AV YG LIQFEDFAN NAF LL
Sbjct: 186 DNETLLKDPLYIGLRHKRIRGQAYDDLLDEFXEAVTSRYGXNCLIQFEDFANANAFRLLH 245
Query: 289 KYGTTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEI 348
KY + FNDDIQ L++H LF GAGEA GIA LI
Sbjct: 246 KYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVXAX 305
Query: 349 SKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTI 408
K+ + EE K+I VDSKGLIV R SL K+ +AHEH NL D VK IKPT+
Sbjct: 306 QKEGVSK-EEAIKRIWXVDSKGLIVKGRA-SLTPEKEHFAHEHCEXKNLEDIVKDIKPTV 363
Query: 409 LIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP 468
LIG + +G FT+++++ A+FN++P+I ALSNPTS++ECTAE+ Y +++GR IFASGSP
Sbjct: 364 LIGVAAIGGAFTQQILQDXAAFNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFASGSP 423
Query: 469 FDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFE 527
FDP +G+ PGQ NN+Y+FPG LG++ G + DD+ L +E +A++V+EEN +
Sbjct: 424 FDPVTLPSGQTLYPGQGNNSYVFPGVALGVISCGLKHIGDDVFLTTAEVIAQEVSEENLQ 483
Query: 528 KGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPVYRNY 584
+G +YPP I+ Y A+ P+P++L S +Y+ Y +
Sbjct: 484 EGRLYPPLVTIQQVSLKIAVRIAKEAYRNNTASTYPQPEDLEAFIRSQVYSTDYNCF 540
>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|B Chain B, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|C Chain C, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|D Chain D, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFL|A Chain A, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|B Chain B, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|C Chain C, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|D Chain D, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1PJL|A Chain A, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|B Chain B, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|C Chain C, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|D Chain D, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|E Chain E, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|F Chain F, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|G Chain G, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|H Chain H, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
Length = 584
Score = 510 bits (1314), Expect = e-145, Method: Compositional matrix adjust.
Identities = 248/523 (47%), Positives = 336/523 (64%), Gaps = 6/523 (1%)
Query: 52 DPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEE 111
+PR NKG AFT +ER L+GLLPP + +Q +Q + ++++ PL+KY+ + ++E
Sbjct: 31 NPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIYIXGIQE 90
Query: 112 RNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNW 171
RNE+LFY++L D++E L P+VYTPTVG AC +YG IFRRP+GL+IS+ ++G + ++ NW
Sbjct: 91 RNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNW 150
Query: 172 PERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNE 231
PE ++ +VVTDGERILGLGDLG G GIPVGKL LYTA GIRP CLP+ +DVGT+N
Sbjct: 151 PENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNI 210
Query: 232 QLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYG 291
LLKD FY GL Q+R Q+Y +L+DEF A+ YG LIQFEDF NHNAF L KY
Sbjct: 211 ALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFRFLRKYR 270
Query: 292 TTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQ 351
+ FNDDIQ ++EH+ LFLGAGEA GIA LI +
Sbjct: 271 EKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVXSXVEN 330
Query: 352 TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAVKVIKPTI 408
+ +E +KKI D GL+V RK + +++P+ H E P + DAV ++KP+
Sbjct: 331 GLSE-QEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIP-DTFEDAVNILKPST 388
Query: 409 LIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP 468
+IG +G GR FT +VI A AS NE+P+I ALSNPT+Q+ECTAEEAYT ++GR +FASGSP
Sbjct: 389 IIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSP 448
Query: 469 FDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFE 527
F P + +G+VF PGQ NN YIFPG L +++ + D + L A++AL Q+T+E
Sbjct: 449 FGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLTDEELA 508
Query: 528 KGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVK 570
+G +YPP +NI+ Y A R P P++ K
Sbjct: 509 QGRLYPPLANIQEVSINIAIKVTEYLYANKXAFRYPEPEDKAK 551
>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
pdb|1QR6|B Chain B, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
Length = 584
Score = 510 bits (1314), Expect = e-145, Method: Compositional matrix adjust.
Identities = 248/523 (47%), Positives = 336/523 (64%), Gaps = 6/523 (1%)
Query: 52 DPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEE 111
+PR NKG AFT +ER L+GLLPP + +Q +Q + ++++ PL+KY+ + ++E
Sbjct: 31 NPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIYIXGIQE 90
Query: 112 RNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNW 171
RNE+LFY++L D++E L P+VYTPTVG AC +YG IFRRP+GL+IS+ ++G + ++ NW
Sbjct: 91 RNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNW 150
Query: 172 PERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNE 231
PE ++ +VVTDGERILGLGDLG G GIPVGKL LYTA GIRP CLP+ +DVGT+N
Sbjct: 151 PENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNI 210
Query: 232 QLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYG 291
LLKD FY GL Q+R Q+Y +L+DEF A+ YG LIQFEDF NHNAF L KY
Sbjct: 211 ALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFRFLRKYR 270
Query: 292 TTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQ 351
+ FNDDIQ ++EH+ LFLGAGEA GIA LI +
Sbjct: 271 EKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVXSXVEN 330
Query: 352 TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAVKVIKPTI 408
+ +E +KKI D GL+V RK + +++P+ H E P + DAV ++KP+
Sbjct: 331 GLSE-QEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIP-DTFEDAVNILKPST 388
Query: 409 LIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP 468
+IG +G GR FT +VI A AS NE+P+I ALSNPT+Q+ECTAEEAYT ++GR +FASGSP
Sbjct: 389 IIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSP 448
Query: 469 FDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFE 527
F P + +G+VF PGQ NN YIFPG L +++ + D + L A++AL Q+T+E
Sbjct: 449 FGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLTDEELA 508
Query: 528 KGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVK 570
+G +YPP +NI+ Y A R P P++ K
Sbjct: 509 QGRLYPPLANIQEVSINIAIKVTEYLYANKXAFRYPEPEDKAK 551
>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|B Chain B, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|C Chain C, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|D Chain D, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1PJ4|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ2|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ3|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate
Length = 564
Score = 510 bits (1314), Expect = e-145, Method: Compositional matrix adjust.
Identities = 248/523 (47%), Positives = 336/523 (64%), Gaps = 6/523 (1%)
Query: 52 DPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEE 111
+PR NKG AFT +ER L+GLLPP + +Q +Q + ++++ PL+KY+ + ++E
Sbjct: 11 NPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIYIXGIQE 70
Query: 112 RNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNW 171
RNE+LFY++L D++E L P+VYTPTVG AC +YG IFRRP+GL+IS+ ++G + ++ NW
Sbjct: 71 RNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNW 130
Query: 172 PERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNE 231
PE ++ +VVTDGERILGLGDLG G GIPVGKL LYTA GIRP CLP+ +DVGT+N
Sbjct: 131 PENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNI 190
Query: 232 QLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYG 291
LLKD FY GL Q+R Q+Y +L+DEF A+ YG LIQFEDF NHNAF L KY
Sbjct: 191 ALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFRFLRKYR 250
Query: 292 TTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQ 351
+ FNDDIQ ++EH+ LFLGAGEA GIA LI +
Sbjct: 251 EKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVXSXVEN 310
Query: 352 TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAVKVIKPTI 408
+ +E +KKI D GL+V RK + +++P+ H E P + DAV ++KP+
Sbjct: 311 GLSE-QEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIP-DTFEDAVNILKPST 368
Query: 409 LIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP 468
+IG +G GR FT +VI A AS NE+P+I ALSNPT+Q+ECTAEEAYT ++GR +FASGSP
Sbjct: 369 IIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSP 428
Query: 469 FDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFE 527
F P + +G+VF PGQ NN YIFPG L +++ + D + L A++AL Q+T+E
Sbjct: 429 FGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLTDEELA 488
Query: 528 KGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVK 570
+G +YPP +NI+ Y A R P P++ K
Sbjct: 489 QGRLYPPLANIQEVSINIAIKVTEYLYANKXAFRYPEPEDKAK 531
>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|B Chain B, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|C Chain C, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|D Chain D, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 551
Score = 509 bits (1311), Expect = e-144, Method: Compositional matrix adjust.
Identities = 248/523 (47%), Positives = 336/523 (64%), Gaps = 6/523 (1%)
Query: 52 DPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEE 111
+PR NKG AFT +ER L+GLLPP + +Q +Q + ++++ PL+KY+ + ++E
Sbjct: 9 NPRTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIYIXGIQE 68
Query: 112 RNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNW 171
RNE+LFY++L D++E L P+VYTPTVG AC +YG IFRRP+GL+IS+ ++G + ++ NW
Sbjct: 69 RNEKLFYRILQDDIESLXPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNW 128
Query: 172 PERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNE 231
PE ++ +VVTDGERILGLGDLG G GIPVGKL LYTA GIRP CLP+ +DVGT+N
Sbjct: 129 PENHVKAVVVTDGERILGLGDLGVYGXGIPVGKLCLYTACAGIRPDRCLPVCIDVGTDNI 188
Query: 232 QLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYG 291
LLKD FY GL Q+R Q+Y +L+DEF A+ YG LIQFEDF NHNAF L KY
Sbjct: 189 ALLKDPFYXGLYQKRDRTQQYDDLIDEFXKAITDRYGRNTLIQFEDFGNHNAFRFLRKYR 248
Query: 292 TTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQ 351
+ FNDDIQ ++EH+ LFLGAGEA GIA LI +
Sbjct: 249 EKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVXSXVEN 308
Query: 352 TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAVKVIKPTI 408
+ +E +KKI D GL+V RK + +++P+ H E P + DAV ++KP+
Sbjct: 309 GLSE-QEAQKKIWXFDKYGLLVKGRKAKIDSYQEPFTHSAPESIP-DTFEDAVNILKPST 366
Query: 409 LIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP 468
+IG +G GR FT +VI A AS NE+P+I ALSNPT+Q+ECTAEEAYT ++GR +FASGSP
Sbjct: 367 IIGVAGAGRLFTPDVIRAXASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSP 426
Query: 469 FDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFE 527
F P + +G+VF PGQ NN YIFPG L +++ + D + L A++AL Q+T+E
Sbjct: 427 FGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLTDEELA 486
Query: 528 KGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVK 570
+G +YPP +NI+ Y A R P P++ K
Sbjct: 487 QGRLYPPLANIQEVSINIAIKVTEYLYANKXAFRYPEPEDKAK 529
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1O0S|A Chain A, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
pdb|1O0S|B Chain B, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
Length = 605
Score = 491 bits (1264), Expect = e-139, Method: Compositional matrix adjust.
Identities = 248/545 (45%), Positives = 351/545 (64%), Gaps = 8/545 (1%)
Query: 42 VTPWTIS--VARDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVP 99
VTP S + ++PR NKG+ F+ ER L GLLPPA ++Q+ Q +++ +R+
Sbjct: 33 VTPKKRSAELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLREQPND 92
Query: 100 LQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLK 159
L +Y+ + L++RNE+LFY+++ D+V+EL+P+VYTPTVG ACQ +G I+R+P+GLYI++
Sbjct: 93 LARYIQLDGLQDRNEKLFYRVVCDHVKELMPIVYTPTVGLACQNFGYIYRKPKGLYITIN 152
Query: 160 EKG--KILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPS 217
+ KI ++L NW E ++ IVVTDGERILGLGDLG G+GIPVGKLALY ALGG++P
Sbjct: 153 DNSVSKIYQILSNWHEEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLALYVALGGVQPK 212
Query: 218 ACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFED 277
CLP+ +DVGTNN LL D FYIGLR +R G++Y LLD FM A + YG+K LIQFED
Sbjct: 213 WCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKACTKKYGQKTLIQFED 272
Query: 278 FANHNAFELLAKYGTTHLVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAG 337
FAN NAF LL KY + +FNDDIQ +++ ++LF GAG A
Sbjct: 273 FANPNAFRLLDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAAS 332
Query: 338 TGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD-SLQHFKKPWAHEHEPVNN 396
TGIAE+I ++ + + EE +I L+D GL+ +RK+ + +H + +A + +
Sbjct: 333 TGIAEMIVHQMQNEGISK-EEACNRIYLMDIDGLVTKNRKEMNPRHVQ--FAKDMPETTS 389
Query: 397 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW 456
+L+ ++ +P LIG+S V F +EVI AMA NE+P+I ALSNPTS++ECTAEEAYT+
Sbjct: 390 ILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALSNPTSKAECTAEEAYTF 449
Query: 457 SKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEA 516
+ G A++ASGSPF FE NG + PGQ NNAYIFPG LG ++ V +D+ L A++
Sbjct: 450 TNGAALYASGSPFPNFELNGHTYKPGQGNNAYIFPGVALGTILFQIRHVDNDLFLLAAKK 509
Query: 517 LAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXXYELGVATRLPRPQNLVKCAESCM 576
+A VTE++ + G +YP IR Y+ G A P+P++L K + +
Sbjct: 510 VASCVTEDSLKVGRVYPQLKEIREISIQIAVEMAKYCYKNGTANLYPQPEDLEKYVRAQV 569
Query: 577 YTPVY 581
Y Y
Sbjct: 570 YNTEY 574
>pdb|3NV9|A Chain A, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
pdb|3NV9|B Chain B, Crystal Structure Of Entamoeba Histolytica Malic Enzyme
Length = 487
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 140/352 (39%), Gaps = 62/352 (17%)
Query: 178 VIVVTDGERILGLGDLGCQG-MGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKD 236
V VV+D R+LG GD+ G +G+ GK L LGGI +PI +D
Sbjct: 93 VGVVSDSTRVLGDGDVTPPGGLGVMEGKALLMKYLGGID---AVPICID----------- 138
Query: 237 EFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLA--KYGTTH 294
+ G+ + + EF+ ++ +G I ED + N +++L +
Sbjct: 139 -------SKNKEGKNDPDAVIEFVQRIQHTFGA---INLEDISQPNCYKILDVLRESCDI 188
Query: 295 LVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 354
V++DD Q + E R +F+GAG + T LI +
Sbjct: 189 PVWHDDQQGTASVTLAGLLNALKLVKKDIHECRMVFIGAGSSNTTCLRLIVTAGADP--- 245
Query: 355 PVEETRKKICLVDSKGLIVSSRKDSLQ--HFKKPW--AHEHEPVNNLLDAVKVIKPTILI 410
KKI + DSKG + + R+D + F + W P A + +LI
Sbjct: 246 ------KKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLI 299
Query: 411 GSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ---SECTAEEAYTWSKGRAIFASGS 467
S G K E + S EKP++ +NP + E AY + GR F
Sbjct: 300 SLSTPGPGVVKA--EWIKSMGEKPIVFCCANPVPEIYPYEAKEAGAYIVATGRGDF---- 353
Query: 468 PFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAK 519
P Q NN+ FPG G +I A ++ D+M +AAS ALA+
Sbjct: 354 -------------PNQVNNSVGFPGILKGALIVRARKITDNMAIAASRALAE 392
>pdb|2DVM|A Chain A, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|B Chain B, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|C Chain C, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
pdb|2DVM|D Chain D, Nad Complex Structure Of Ph1275 Protein From Pyrococcus
Horikoshii
Length = 439
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 117/430 (27%), Positives = 177/430 (41%), Gaps = 85/430 (19%)
Query: 119 KLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQV 178
K+ +++ EEL + YTP V E C++ I R P +Y KG + V
Sbjct: 25 KVSLESREELT-LAYTPGVAEPCKE---IARDPGKVY-EYTSKGNL-------------V 66
Query: 179 IVVTDGERILGLGDLGCQGMGIPV--GKLALYTALGGIRPSACLPITVDVGTNNEQLLKD 236
VV+DG RILGLG++G G+PV GK L+ GG+ D
Sbjct: 67 AVVSDGSRILGLGNIGPLA-GLPVMEGKALLFKRFGGV---------------------D 104
Query: 237 EFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH-- 294
F I +++ QE + +D + A+ +G I ED A+ F +L +
Sbjct: 105 AFPIMIKE-----QEPNKFID-IVKAIAPTFGG---INLEDIASPKCFYILERLREELDI 155
Query: 295 LVFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 354
VF+DD Q ++E GAG AG ++ T+A
Sbjct: 156 PVFHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGAGAAGFATLRIL-------TEA 208
Query: 355 PVE-ETRKKICLVDSKGLIVSSRKDSLQHFK-KPWAHEHEPVNNL----LDAVKVIKPTI 408
V+ E + + LV+ K I++S D + F + W + N+ +A+K I
Sbjct: 209 GVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDADVLI 268
Query: 409 LIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP 468
G G + IE M NE ++ L+NP E EEA G I A+G
Sbjct: 269 SFTRPGPG-VIKPQWIEKM---NEDAIVFPLANPVP--EILPEEAK--KAGARIVATG-- 318
Query: 469 FDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEK 528
+ P Q NN FPG G + A + D M++AA++A+A V EE E+
Sbjct: 319 --------RSDYPNQINNLLGFPGIFRGALDVRARTITDSMIIAAAKAIASIV-EEPSEE 369
Query: 529 GLIYPPFSNI 538
+I P + I
Sbjct: 370 NIIPSPLNPI 379
>pdb|2A9F|A Chain A, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
pdb|2A9F|B Chain B, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
Length = 398
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 89/366 (24%), Positives = 134/366 (36%), Gaps = 75/366 (20%)
Query: 178 VIVVTDGERILGLGDLGCQGMGIPV--GKLALYTALGGIRPSACLPITVDVGTNNEQLLK 235
V V++DG +LGLGD+G + +PV GK AL+ A G+ +PI +D E +
Sbjct: 68 VAVISDGTAVLGLGDIGPEA-AMPVMEGKAALFKAFAGVD---AIPIVLDTKDTEEII-- 121
Query: 236 DEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKY-GTTH 294
+ A+ +G I ED + FE+ + H
Sbjct: 122 ----------------------SIVKALAPTFGG---INLEDISAPRCFEIEQRLIKECH 156
Query: 295 L-VFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTK 353
+ VF+DD +L E + G G AG I T+
Sbjct: 157 IPVFHDDQHGTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGGSAGLSI-----------TR 205
Query: 354 APVEETRKKICLVDSKGLIVSSRKDSL--QHFKKPWAHEHE-PVNNLLDAVKVIKPTILI 410
+ K+ +VD G+I L H E L DA++ I I
Sbjct: 206 KLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALE--GADIFI 263
Query: 411 GSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ---SECTAEEAYTWSKGRAIFASGS 467
G S G E I MA+ +P+I A++NP + E AY GR+ F
Sbjct: 264 GVSAPG-VLKAEWISKMAA---RPVIFAMANPIPEIYPDEALEAGAYIVGTGRSDF---- 315
Query: 468 PFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFE 527
P Q NN FPG G + + A + +M +AA++ +A V ++
Sbjct: 316 -------------PNQINNVLAFPGIFRGALDARAKTITVEMQIAAAKGIASLVPDDALS 362
Query: 528 KGLIYP 533
I P
Sbjct: 363 TTNIIP 368
>pdb|1WW8|A Chain A, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
pdb|1WW8|B Chain B, Crystal Structure Of Malic Enzyme From Pyrococcus
Horikoshii Ot3
Length = 439
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 111/433 (25%), Positives = 168/433 (38%), Gaps = 91/433 (21%)
Query: 119 KLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQV 178
K+ +++ EEL + YTP V E C++ I R P +Y KG + V
Sbjct: 25 KVSLESREELT-LAYTPGVAEPCKE---IARDPGKVY-EYTSKGNL-------------V 66
Query: 179 IVVTDGERILGLGDLG-CQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDE 237
VV+DG RILGLG++G G+ + GK L+ GG+ D
Sbjct: 67 AVVSDGSRILGLGNIGPLAGLPVXEGKALLFKRFGGV---------------------DA 105
Query: 238 FYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH--L 295
F I +++ QE + +D + A+ +G I ED A+ F +L +
Sbjct: 106 FPIXIKE-----QEPNKFID-IVKAIAPTFGG---INLEDIASPKCFYILERLREELDIP 156
Query: 296 VFNDDIQXXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAP 355
VF+DD Q ++E GAG AG ++ T+A
Sbjct: 157 VFHDDQQGTAAVVLAGLLNALKVVGKKISEITLALFGAGAAGFATLRIL-------TEAG 209
Query: 356 VE-ETRKKICLVDSKGLIVSSRKDSLQHFK-KPWAH--------EHEPVNNLLDAVKVIK 405
V+ E + + LV+ K I++S D + F + W E P L DA
Sbjct: 210 VKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDA----- 264
Query: 406 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFAS 465
+LI + G K + + NE ++ L+NP E EEA G I A+
Sbjct: 265 -DVLISFTRPGPGVIKP--QWIEKXNEDAIVFPLANPVP--EILPEEAK--KAGARIVAT 317
Query: 466 GSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEEN 525
G + P Q NN FPG G + A R D + A+ + EE
Sbjct: 318 G----------RSDYPNQINNLLGFPGIFRGALDVRA-RTITDSXIIAAAKAIASIVEEP 366
Query: 526 FEKGLIYPPFSNI 538
E+ +I P + I
Sbjct: 367 SEENIIPSPLNPI 379
>pdb|2HAE|A Chain A, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|B Chain B, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|C Chain C, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
pdb|2HAE|D Chain D, Crystal Structure Of A Putative Malic Enzyme (Malate
Oxidoreductase)
Length = 386
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 93/404 (23%), Positives = 149/404 (36%), Gaps = 84/404 (20%)
Query: 127 ELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGER 186
E L ++YTP V + + + P+ Y+ + R V VV+DG
Sbjct: 28 ETLSLLYTPGVADVAR---ACAEDPEKTYV--------------YTSRWNTVAVVSDGSA 70
Query: 187 ILGLGDLGCQGMGIPV--GKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQ 244
+LGLG++G G +PV GK L+ A I D F I L +
Sbjct: 71 VLGLGNIGPYG-ALPVMEGKAFLFKAFADI---------------------DAFPICLSE 108
Query: 245 RRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYG--TTHLVFNDDIQ 302
E + + +++ ++G I ED F +L + VF+DD Q
Sbjct: 109 SE------EEKIISIVKSLEPSFGG---INLEDIGAPKCFRILQRLSEEMNIPVFHDDQQ 159
Query: 303 XXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 362
+ E + + G G AG I + + ++ K
Sbjct: 160 GTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFL-----------LDLGVKN 208
Query: 363 ICLVDSKGLIVSSRKDS-LQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTK 421
+ VD KG++ + ++ L + A P D ++ G
Sbjct: 209 VVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSRGNILKP 268
Query: 422 EVIEAMASFNEKPLILALSNPTSQSEC-TAEEAYTWSKGRAIFASGSPFDPFEYNGKVFV 480
E I+ M+ KP+I AL+NP + + A EA G I A+ G+
Sbjct: 269 EWIKKMS---RKPVIFALANPVPEIDPELAREA-----GAFIVAT----------GRSDH 310
Query: 481 PGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEE 524
P Q NN FPG G V + ++ +MLL+A EA+A+ E
Sbjct: 311 PNQVNNLLAFPGIMKGAVEKRS-KITKNMLLSAVEAIARSCEPE 353
>pdb|1VL6|A Chain A, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|B Chain B, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|C Chain C, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
pdb|1VL6|D Chain D, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542)
From Thermotoga Maritima At 2.61 A Resolution
Length = 388
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 91/404 (22%), Positives = 147/404 (36%), Gaps = 84/404 (20%)
Query: 127 ELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGER 186
E L ++YTP V + + + P+ Y+ + R V VV+DG
Sbjct: 38 ETLSLLYTPGVADVAR---ACAEDPEKTYV--------------YTSRWNTVAVVSDGSA 80
Query: 187 ILGLGDLGCQGMGIPV--GKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQ 244
+LGLG++G G +PV GK L+ A I D F I L +
Sbjct: 81 VLGLGNIGPYG-ALPVXEGKAFLFKAFADI---------------------DAFPICLSE 118
Query: 245 RRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYG--TTHLVFNDDIQ 302
E + + +++ ++G I ED F +L + VF+DD Q
Sbjct: 119 SE------EEKIISIVKSLEPSFGG---INLEDIGAPKCFRILQRLSEEXNIPVFHDDQQ 169
Query: 303 XXXXXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 362
+ E + + G G AG I + + ++ K
Sbjct: 170 GTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFL-----------LDLGVKN 218
Query: 363 ICLVDSKGLIVSSRKDS-LQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTK 421
+ VD KG++ + ++ L + A P D ++ G
Sbjct: 219 VVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSRGNILKP 278
Query: 422 EVIEAMASFNEKPLILALSNPTSQSEC-TAEEAYTWSKGRAIFASGSPFDPFEYNGKVFV 480
E I+ + KP+I AL+NP + + A EA G I A+ G+
Sbjct: 279 EWIKKXS---RKPVIFALANPVPEIDPELAREA-----GAFIVAT----------GRSDH 320
Query: 481 PGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEE 524
P Q NN FPG G V + ++ + LL+A EA+A+ E
Sbjct: 321 PNQVNNLLAFPGIXKGAVEKRS-KITKNXLLSAVEAIARSCEPE 363
>pdb|2Y8N|A Chain A, Crystal Structure Of Glycyl Radical Enzyme
pdb|2Y8N|C Chain C, Crystal Structure Of Glycyl Radical Enzyme
pdb|2YAJ|A Chain A, Crystal Structure Of Glycyl Radical Enzyme With Bound
Substrate
pdb|2YAJ|C Chain C, Crystal Structure Of Glycyl Radical Enzyme With Bound
Substrate
Length = 897
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 15/85 (17%)
Query: 451 EEAYTWSKGRAIFASGSPFDPFEYNGKV-FVPGQANNAYIFPGFGLGLVISGAIRVHDDM 509
+A W G + ++ F P EYNGKV +PG A+ P G G+ G +V +
Sbjct: 493 HDARAWCLGGCLESAPGCFLPLEYNGKVTMIPGGAS-----PTCGTGVHFIGMPKV---L 544
Query: 510 LLAASEALAKQVTEENFEKGLIYPP 534
L + L K+ ++ +YPP
Sbjct: 545 ELVLTNGLDKRTGKQ------VYPP 563
>pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex
Length = 683
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 385 KPWAHEHEPVNNLLDAVKV-IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 443
+P + + + L+D +++ +K L+G++G G+TFT + +A N KP ++ N T
Sbjct: 37 EPQGDQPQAIAKLVDGLRLGVKHQTLLGATGTGKTFT--ISNVIAQVN-KPTLVIAHNKT 93
Query: 444 SQSECTAE 451
+ +E
Sbjct: 94 LAGQLHSE 101
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 385 KPWAHEHEPVNNLLDAVKV-IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 438
+P + + + L+D ++ +K L+G++G G+TFT + +A N+ L++A
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVNKPTLVIA 64
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 385 KPWAHEHEPVNNLLDAVKV-IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 438
+P + + + L+D ++ +K L+G++G G+TFT + +A N+ L++A
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVNKPTLVIA 64
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 385 KPWAHEHEPVNNLLDAVKV-IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 438
+P + + + L+D ++ +K L+G++G G+TFT + +A N+ L++A
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVNKPTLVIA 64
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 385 KPWAHEHEPVNNLLDAVKV-IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 438
+P + + + L+D ++ +K L+G++G G+TFT + +A N+ L++A
Sbjct: 12 EPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFT--ISNVIAQVNKPTLVIA 64
>pdb|3HQ8|A Chain A, Ccpa From G. Sulfurreducens S134pV135K VARIANT
pdb|3HQ8|B Chain B, Ccpa From G. Sulfurreducens S134pV135K VARIANT
Length = 345
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 345 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV--NNLLDAVK 402
A ++++Q K PV+ ++ D ++S D + FKK + E +PV +N+ A++
Sbjct: 120 AKDLAEQAKGPVQAPKEMNNTPDQVVKTLNSIPDYVALFKKAFPGEKDPVTFDNMAKAIE 179
Query: 403 VIKPTILIGSS 413
V + T++ S
Sbjct: 180 VFEATLITPDS 190
>pdb|3HQ6|A Chain A, Cytochrome C Peroxidase From G. Sulfurreducens, Wild Type
pdb|3HQ6|B Chain B, Cytochrome C Peroxidase From G. Sulfurreducens, Wild Type
Length = 345
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 345 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV--NNLLDAVK 402
A ++++Q K PV+ + + D ++S D + FKK + E +PV +N+ A++
Sbjct: 120 AKDLAEQAKGPVQASVEMNNTPDQVVKTLNSIPDYVALFKKAFPGEKDPVTFDNMAKAIE 179
Query: 403 VIKPTILIGSS 413
V + T++ S
Sbjct: 180 VFEATLITPDS 190
>pdb|2OQY|A Chain A, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|B Chain B, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|C Chain C, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|D Chain D, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|E Chain E, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|F Chain F, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|G Chain G, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|H Chain H, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|3ES7|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES7|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|C Chain C, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|D Chain D, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|E Chain E, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|F Chain F, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|G Chain G, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|H Chain H, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3FYY|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg
pdb|3FYY|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg
pdb|3GD6|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Phosphate
Length = 391
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
Query: 257 DEFMSAVKQNYGEKVLIQFEDFAN-------HNAFELLAKY 290
+EF+S VK+ +G +V I+ DF++ H A + L KY
Sbjct: 173 EEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKY 213
>pdb|3HPF|A Chain A, Crystal Structure Of The Mutant Y90f Of Divergent
Galactarate Dehydratase From Oceanobacillus Iheyensis
Complexed With Mg And Galactarate
pdb|3HPF|B Chain B, Crystal Structure Of The Mutant Y90f Of Divergent
Galactarate Dehydratase From Oceanobacillus Iheyensis
Complexed With Mg And Galactarate
Length = 391
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
Query: 257 DEFMSAVKQNYGEKVLIQFEDFAN-------HNAFELLAKY 290
+EF+S VK+ +G +V I+ DF++ H A + L KY
Sbjct: 173 EEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKY 213
>pdb|3HQ7|A Chain A, Ccpa From G. Sulfurreducens, G94kK97QR100I VARIANT
Length = 345
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 345 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV--NNLLDAVK 402
A ++++Q K PV+ + + D ++S D + FKK + E +PV +N+ A++
Sbjct: 120 AKDLAEQAKGPVQASVEMNNTPDQVVKTLNSIPDYVALFKKAFPGEKDPVTFDNMAKAIE 179
Query: 403 VIKPTILIGSS 413
V + T++ S
Sbjct: 180 VFEATLITPDS 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,440,419
Number of Sequences: 62578
Number of extensions: 680881
Number of successful extensions: 1742
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1683
Number of HSP's gapped (non-prelim): 27
length of query: 585
length of database: 14,973,337
effective HSP length: 104
effective length of query: 481
effective length of database: 8,465,225
effective search space: 4071773225
effective search space used: 4071773225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)