Query 007904
Match_columns 585
No_of_seqs 188 out of 1365
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 16:53:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007904.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007904hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 5E-216 1E-220 1701.7 47.5 539 45-584 30-568 (582)
2 PRK13529 malate dehydrogenase; 100.0 1E-209 2E-214 1688.0 51.3 537 45-585 16-561 (563)
3 PLN03129 NADP-dependent malic 100.0 3E-209 7E-214 1688.8 51.7 541 45-585 41-581 (581)
4 PTZ00317 NADP-dependent malic 100.0 1E-207 2E-212 1671.0 51.9 535 44-580 17-559 (559)
5 COG0281 SfcA Malic enzyme [Ene 100.0 3E-120 7E-125 954.5 34.3 424 79-584 1-431 (432)
6 PRK12861 malic enzyme; Reviewe 100.0 5E-111 1E-115 945.5 34.5 370 126-574 34-420 (764)
7 PRK12862 malic enzyme; Reviewe 100.0 5E-110 1E-114 942.8 34.7 369 126-574 38-424 (763)
8 PRK07232 bifunctional malic en 100.0 6E-109 1E-113 929.7 35.1 359 126-562 30-406 (752)
9 cd05312 NAD_bind_1_malic_enz N 100.0 2.8E-99 6E-104 769.1 29.4 277 301-579 1-279 (279)
10 PF03949 Malic_M: Malic enzyme 100.0 9.4E-96 2E-100 735.2 20.8 252 301-554 1-255 (255)
11 cd00762 NAD_bind_malic_enz NAD 100.0 5.8E-93 1.3E-97 714.2 25.5 251 301-553 1-254 (254)
12 PF00390 malic: Malic enzyme, 100.0 2.6E-83 5.6E-88 615.8 9.1 182 110-291 1-182 (182)
13 cd05311 NAD_bind_2_malic_enz N 100.0 3.7E-58 8.1E-63 455.7 22.2 223 301-553 1-226 (226)
14 cd05191 NAD_bind_amino_acid_DH 98.9 2.3E-08 4.9E-13 85.3 11.7 86 303-440 1-86 (86)
15 PRK05476 S-adenosyl-L-homocyst 97.6 0.0063 1.4E-07 66.9 20.8 157 248-443 107-302 (425)
16 TIGR01035 hemA glutamyl-tRNA r 97.3 0.0011 2.4E-08 72.2 9.7 121 302-443 158-280 (417)
17 cd05211 NAD_bind_Glu_Leu_Phe_V 97.1 0.0059 1.3E-07 61.3 12.4 130 304-455 2-140 (217)
18 PLN02477 glutamate dehydrogena 97.1 0.015 3.3E-07 63.8 15.9 186 247-455 112-324 (410)
19 cd05213 NAD_bind_Glutamyl_tRNA 97.0 0.004 8.8E-08 65.2 10.3 137 281-444 139-277 (311)
20 TIGR00936 ahcY adenosylhomocys 97.0 0.032 6.9E-07 61.2 17.2 127 293-453 156-293 (406)
21 PRK09414 glutamate dehydrogena 97.0 0.038 8.3E-07 61.3 17.9 189 247-455 138-357 (445)
22 PRK00045 hemA glutamyl-tRNA re 96.9 0.0032 6.9E-08 68.7 9.2 120 303-443 161-283 (423)
23 cd00401 AdoHcyase S-adenosyl-L 96.9 0.014 3E-07 64.1 14.1 129 293-455 163-302 (413)
24 PLN02494 adenosylhomocysteinas 96.8 0.013 2.9E-07 65.2 13.0 130 293-456 215-355 (477)
25 PRK14031 glutamate dehydrogena 96.8 0.073 1.6E-06 59.1 18.6 127 247-386 134-276 (444)
26 cd01080 NAD_bind_m-THF_DH_Cycl 96.8 0.009 2E-07 57.9 10.1 91 309-443 28-119 (168)
27 PRK14030 glutamate dehydrogena 96.8 0.081 1.7E-06 58.8 18.6 189 247-455 134-357 (445)
28 TIGR02853 spore_dpaA dipicolin 96.7 0.012 2.5E-07 61.5 10.6 138 302-468 128-265 (287)
29 PTZ00079 NADP-specific glutama 96.6 0.14 3.1E-06 56.9 18.7 180 247-444 143-358 (454)
30 PF01488 Shikimate_DH: Shikima 96.6 0.0019 4.1E-08 59.6 3.6 102 321-444 8-113 (135)
31 cd01076 NAD_bind_1_Glu_DH NAD( 96.5 0.014 3.1E-07 58.9 9.5 123 302-443 8-140 (227)
32 PRK14982 acyl-ACP reductase; P 96.5 0.023 5E-07 60.9 11.4 113 304-444 134-250 (340)
33 PLN00203 glutamyl-tRNA reducta 96.1 0.019 4.1E-07 64.7 8.8 201 303-556 243-455 (519)
34 PRK08306 dipicolinate synthase 96.1 0.05 1.1E-06 56.9 11.3 128 307-468 134-266 (296)
35 COG0373 HemA Glutamyl-tRNA red 96.1 0.032 7E-07 61.3 10.0 213 281-557 139-361 (414)
36 PTZ00075 Adenosylhomocysteinas 96.0 0.13 2.9E-06 57.5 14.8 123 293-443 215-344 (476)
37 PRK14192 bifunctional 5,10-met 96.0 0.12 2.6E-06 54.2 13.5 109 303-455 137-250 (283)
38 PRK14175 bifunctional 5,10-met 96.0 0.043 9.3E-07 57.7 10.0 97 302-442 135-232 (286)
39 cd01065 NAD_bind_Shikimate_DH 95.9 0.055 1.2E-06 49.7 9.5 108 310-443 4-120 (155)
40 PLN00106 malate dehydrogenase 95.9 0.046 1E-06 58.1 10.2 118 310-443 4-138 (323)
41 cd01075 NAD_bind_Leu_Phe_Val_D 95.9 0.094 2E-06 51.8 11.5 123 303-455 4-129 (200)
42 PRK13940 glutamyl-tRNA reducta 95.7 0.038 8.2E-07 60.7 8.6 111 306-443 163-276 (414)
43 PRK08293 3-hydroxybutyryl-CoA 95.7 0.16 3.4E-06 52.4 12.6 191 326-572 4-221 (287)
44 cd05313 NAD_bind_2_Glu_DH NAD( 95.6 0.25 5.3E-06 51.2 13.6 133 303-455 16-167 (254)
45 PRK12549 shikimate 5-dehydroge 95.6 0.04 8.7E-07 57.3 7.9 90 310-416 112-203 (284)
46 cd01078 NAD_bind_H4MPT_DH NADP 95.3 0.093 2E-06 50.8 9.1 54 304-369 7-61 (194)
47 PRK00676 hemA glutamyl-tRNA re 95.0 0.13 2.8E-06 55.3 9.6 122 281-444 136-265 (338)
48 PRK10792 bifunctional 5,10-met 94.8 0.27 5.9E-06 51.8 11.3 94 303-440 137-231 (285)
49 TIGR00518 alaDH alanine dehydr 94.7 0.11 2.5E-06 56.0 8.5 95 323-441 165-268 (370)
50 TIGR01809 Shik-DH-AROM shikima 94.7 0.076 1.6E-06 55.1 6.9 103 293-423 99-208 (282)
51 cd05197 GH4_glycoside_hydrolas 94.5 0.09 1.9E-06 58.0 7.2 125 326-466 1-166 (425)
52 PRK05086 malate dehydrogenase; 94.5 0.22 4.8E-06 52.6 9.8 104 326-443 1-121 (312)
53 PF00670 AdoHcyase_NAD: S-aden 94.4 0.28 6.1E-06 47.7 9.6 120 302-455 3-123 (162)
54 PF03807 F420_oxidored: NADP o 94.1 0.078 1.7E-06 45.2 4.6 94 327-442 1-96 (96)
55 TIGR02356 adenyl_thiF thiazole 94.1 0.081 1.8E-06 52.2 5.3 38 321-369 17-54 (202)
56 PRK14191 bifunctional 5,10-met 94.0 0.2 4.4E-06 52.7 8.2 84 304-425 136-220 (285)
57 PF00056 Ldh_1_N: lactate/mala 93.9 0.048 1E-06 51.0 3.1 105 326-443 1-121 (141)
58 cd00650 LDH_MDH_like NAD-depen 93.5 0.16 3.4E-06 51.8 6.4 127 328-467 1-145 (263)
59 PRK06035 3-hydroxyacyl-CoA deh 93.4 1.2 2.6E-05 45.9 12.8 32 326-369 4-35 (291)
60 PF00208 ELFV_dehydrog: Glutam 93.3 0.22 4.7E-06 51.1 7.0 128 300-443 6-151 (244)
61 cd05212 NAD_bind_m-THF_DH_Cycl 93.3 0.7 1.5E-05 43.7 9.9 89 306-438 9-98 (140)
62 PTZ00325 malate dehydrogenase; 93.3 0.48 1E-05 50.5 9.8 107 323-443 6-128 (321)
63 cd05296 GH4_P_beta_glucosidase 93.3 0.17 3.7E-06 55.7 6.5 125 326-466 1-166 (419)
64 PRK08605 D-lactate dehydrogena 93.2 1.5 3.3E-05 46.7 13.4 153 257-441 59-237 (332)
65 PRK09424 pntA NAD(P) transhydr 93.2 0.67 1.4E-05 52.5 11.1 228 175-450 30-296 (509)
66 cd05291 HicDH_like L-2-hydroxy 93.1 0.33 7.1E-06 50.8 8.1 125 327-468 2-144 (306)
67 PRK08328 hypothetical protein; 93.1 0.051 1.1E-06 54.8 2.1 120 287-444 7-131 (231)
68 cd01079 NAD_bind_m-THF_DH NAD 93.1 0.62 1.3E-05 46.7 9.5 103 306-425 34-147 (197)
69 PRK08223 hypothetical protein; 92.8 0.19 4E-06 53.0 5.8 127 284-441 4-153 (287)
70 PRK12749 quinate/shikimate deh 92.8 0.24 5.2E-06 51.8 6.5 49 310-369 109-157 (288)
71 PRK07531 bifunctional 3-hydrox 92.7 1.5 3.2E-05 49.1 13.1 123 326-473 5-144 (495)
72 PRK05600 thiamine biosynthesis 92.6 0.24 5.1E-06 53.7 6.4 102 321-438 37-162 (370)
73 PRK00066 ldh L-lactate dehydro 92.5 0.28 6.1E-06 51.9 6.7 126 326-468 7-149 (315)
74 PRK12548 shikimate 5-dehydroge 92.5 0.34 7.3E-06 50.5 7.2 58 293-369 102-159 (289)
75 PTZ00117 malate dehydrogenase; 92.5 0.53 1.2E-05 49.8 8.7 126 324-467 4-148 (319)
76 PRK00257 erythronate-4-phospha 92.4 0.98 2.1E-05 49.4 10.8 159 304-503 95-265 (381)
77 PRK14194 bifunctional 5,10-met 92.4 0.76 1.6E-05 48.8 9.6 93 304-440 138-231 (301)
78 PRK14189 bifunctional 5,10-met 92.2 0.53 1.2E-05 49.6 8.2 85 303-425 136-221 (285)
79 cd00757 ThiF_MoeB_HesA_family 92.2 0.46 1E-05 47.6 7.4 38 321-369 17-54 (228)
80 PRK14027 quinate/shikimate deh 92.1 0.31 6.8E-06 50.9 6.4 49 310-369 112-160 (283)
81 PTZ00082 L-lactate dehydrogena 92.0 0.6 1.3E-05 49.6 8.5 124 325-466 6-153 (321)
82 PLN02928 oxidoreductase family 92.0 1.6 3.5E-05 46.9 11.7 139 303-464 121-284 (347)
83 PRK12475 thiamine/molybdopteri 92.0 0.35 7.7E-06 51.7 6.7 39 321-370 20-58 (338)
84 PRK08762 molybdopterin biosynt 92.0 0.43 9.3E-06 51.4 7.4 38 321-369 131-168 (376)
85 PRK14176 bifunctional 5,10-met 91.8 0.94 2E-05 47.9 9.5 85 303-425 142-227 (287)
86 TIGR02355 moeB molybdopterin s 91.5 0.5 1.1E-05 48.2 6.9 38 321-369 20-57 (240)
87 PRK14178 bifunctional 5,10-met 91.5 0.56 1.2E-05 49.3 7.3 85 303-425 130-215 (279)
88 TIGR01763 MalateDH_bact malate 91.4 0.37 8E-06 50.7 6.0 124 326-467 2-144 (305)
89 TIGR02992 ectoine_eutC ectoine 91.2 0.93 2E-05 48.0 8.8 115 311-452 117-237 (326)
90 PF02826 2-Hacid_dh_C: D-isome 91.1 0.88 1.9E-05 43.8 7.8 115 316-462 27-147 (178)
91 PRK09260 3-hydroxybutyryl-CoA 91.0 0.47 1E-05 48.8 6.3 122 326-472 2-144 (288)
92 cd05298 GH4_GlvA_pagL_like Gly 91.0 0.57 1.2E-05 52.0 7.2 130 326-470 1-171 (437)
93 PRK00258 aroE shikimate 5-dehy 90.9 0.54 1.2E-05 48.5 6.6 50 309-369 106-156 (278)
94 cd05297 GH4_alpha_glucosidase_ 90.9 0.7 1.5E-05 50.8 7.8 126 327-468 2-170 (423)
95 PRK06129 3-hydroxyacyl-CoA deh 90.9 0.41 8.8E-06 49.9 5.7 32 326-369 3-34 (308)
96 PRK14619 NAD(P)H-dependent gly 90.8 1.8 3.8E-05 45.2 10.4 33 325-369 4-36 (308)
97 COG0111 SerA Phosphoglycerate 90.7 1.8 3.9E-05 46.3 10.4 100 304-428 103-224 (324)
98 PRK11880 pyrroline-5-carboxyla 90.7 3.1 6.8E-05 42.0 11.7 96 326-444 3-98 (267)
99 cd00704 MDH Malate dehydrogena 90.6 1 2.2E-05 48.0 8.5 110 327-443 2-129 (323)
100 PRK15438 erythronate-4-phospha 90.6 2.3 5.1E-05 46.5 11.3 116 303-454 94-217 (378)
101 PRK06130 3-hydroxybutyryl-CoA 90.5 0.92 2E-05 47.0 7.9 32 326-369 5-36 (311)
102 PRK06223 malate dehydrogenase; 90.4 0.65 1.4E-05 48.2 6.7 119 326-469 3-147 (307)
103 PF00899 ThiF: ThiF family; I 90.4 0.48 1E-05 43.3 5.1 37 324-371 1-37 (135)
104 PRK14190 bifunctional 5,10-met 90.3 1.5 3.2E-05 46.3 9.1 85 303-425 136-221 (284)
105 COG0169 AroE Shikimate 5-dehyd 90.2 0.63 1.4E-05 48.9 6.4 48 311-369 110-159 (283)
106 PRK15076 alpha-galactosidase; 90.2 0.74 1.6E-05 50.9 7.3 129 326-470 2-174 (431)
107 PRK07688 thiamine/molybdopteri 90.2 0.37 8.1E-06 51.6 4.8 38 321-369 20-57 (339)
108 PRK05690 molybdopterin biosynt 89.8 0.94 2E-05 46.2 7.1 38 321-369 28-65 (245)
109 COG0334 GdhA Glutamate dehydro 89.6 11 0.00024 41.8 15.5 179 246-444 111-317 (411)
110 PRK14184 bifunctional 5,10-met 89.6 1.1 2.4E-05 47.3 7.6 89 303-425 135-224 (286)
111 PRK14179 bifunctional 5,10-met 89.4 2 4.2E-05 45.4 9.2 84 304-425 137-221 (284)
112 PRK14183 bifunctional 5,10-met 89.3 1.5 3.2E-05 46.3 8.2 85 303-425 135-220 (281)
113 PF01210 NAD_Gly3P_dh_N: NAD-d 89.1 0.39 8.5E-06 45.3 3.6 85 327-431 1-93 (157)
114 PRK14851 hypothetical protein; 88.9 1.5 3.2E-05 51.5 8.6 123 321-459 39-194 (679)
115 cd01336 MDH_cytoplasmic_cytoso 88.8 2.8 6E-05 44.7 10.0 134 326-469 3-156 (325)
116 TIGR02354 thiF_fam2 thiamine b 88.7 0.5 1.1E-05 46.9 4.1 107 321-447 17-126 (200)
117 PRK05597 molybdopterin biosynt 88.7 1.1 2.3E-05 48.3 6.9 101 321-440 24-151 (355)
118 COG0578 GlpA Glycerol-3-phosph 88.6 2.6 5.7E-05 48.1 10.2 162 324-558 11-179 (532)
119 PRK14172 bifunctional 5,10-met 88.6 2.7 5.8E-05 44.3 9.6 84 304-425 137-221 (278)
120 PRK14177 bifunctional 5,10-met 88.4 2.7 5.9E-05 44.4 9.5 83 305-425 139-222 (284)
121 PRK04346 tryptophan synthase s 88.2 9.8 0.00021 41.9 14.0 95 219-346 23-128 (397)
122 TIGR00561 pntA NAD(P) transhyd 88.2 2.7 5.9E-05 47.7 9.9 212 175-429 29-276 (511)
123 cd01337 MDH_glyoxysomal_mitoch 88.1 3.3 7.2E-05 44.0 10.1 102 327-443 2-120 (310)
124 PRK12550 shikimate 5-dehydroge 88.1 1.1 2.4E-05 46.6 6.4 56 294-369 100-155 (272)
125 PF02056 Glyco_hydro_4: Family 88.0 0.92 2E-05 44.9 5.4 109 327-449 1-151 (183)
126 TIGR01915 npdG NADPH-dependent 87.8 2.1 4.5E-05 42.5 7.9 96 327-445 2-106 (219)
127 PF02882 THF_DHG_CYH_C: Tetrah 87.8 2.9 6.2E-05 40.6 8.6 85 303-425 14-99 (160)
128 PRK14174 bifunctional 5,10-met 87.7 1.8 3.9E-05 45.9 7.7 87 305-425 139-226 (295)
129 PRK05442 malate dehydrogenase; 87.6 2 4.3E-05 45.9 8.1 110 327-443 6-133 (326)
130 PRK07574 formate dehydrogenase 87.6 5.9 0.00013 43.5 11.8 144 292-466 136-308 (385)
131 PRK07878 molybdopterin biosynt 87.5 1.5 3.2E-05 47.8 7.2 103 321-439 38-164 (392)
132 PRK14188 bifunctional 5,10-met 87.5 1.8 3.9E-05 45.9 7.6 83 304-424 137-220 (296)
133 PRK14187 bifunctional 5,10-met 87.3 3.5 7.6E-05 43.8 9.6 85 303-425 138-223 (294)
134 TIGR01772 MDH_euk_gproteo mala 87.3 3.6 7.7E-05 43.8 9.7 102 327-443 1-119 (312)
135 PRK07411 hypothetical protein; 87.2 1.3 2.9E-05 48.2 6.6 99 321-438 34-159 (390)
136 PLN02516 methylenetetrahydrofo 87.2 3.4 7.5E-05 43.9 9.4 85 303-425 145-230 (299)
137 PRK14168 bifunctional 5,10-met 87.1 3.6 7.9E-05 43.7 9.6 89 303-425 139-228 (297)
138 PRK08644 thiamine biosynthesis 87.1 0.68 1.5E-05 46.3 4.0 38 321-369 24-61 (212)
139 COG1486 CelF Alpha-galactosida 87.1 0.51 1.1E-05 52.5 3.3 124 324-462 2-166 (442)
140 PLN02306 hydroxypyruvate reduc 86.8 5.2 0.00011 43.8 10.8 174 291-495 107-323 (386)
141 PRK07634 pyrroline-5-carboxyla 86.7 1.6 3.4E-05 43.5 6.3 118 324-466 3-121 (245)
142 cd01338 MDH_choloroplast_like 86.7 3.6 7.9E-05 43.8 9.4 110 326-443 3-131 (322)
143 TIGR00872 gnd_rel 6-phosphoglu 86.6 2.2 4.7E-05 44.5 7.5 98 327-451 2-102 (298)
144 PRK13243 glyoxylate reductase; 86.4 6.7 0.00014 41.9 11.2 167 292-495 89-291 (333)
145 PRK14166 bifunctional 5,10-met 86.3 4.2 9E-05 43.0 9.4 86 302-425 134-220 (282)
146 PRK14170 bifunctional 5,10-met 86.2 4.2 9.2E-05 43.0 9.4 85 303-425 135-220 (284)
147 PRK14193 bifunctional 5,10-met 86.2 2.9 6.4E-05 44.2 8.3 86 304-425 137-223 (284)
148 PRK14171 bifunctional 5,10-met 86.2 3.1 6.8E-05 44.0 8.5 86 302-425 136-222 (288)
149 PF01262 AlaDh_PNT_C: Alanine 86.0 0.27 5.9E-06 46.9 0.5 90 323-428 18-130 (168)
150 PRK12921 2-dehydropantoate 2-r 85.4 3 6.4E-05 42.7 7.8 101 327-444 2-106 (305)
151 TIGR01758 MDH_euk_cyt malate d 85.4 4.9 0.00011 42.9 9.6 135 327-471 1-155 (324)
152 PRK08291 ectoine utilization p 85.3 3.1 6.8E-05 44.1 8.1 116 311-452 120-240 (330)
153 TIGR01759 MalateDH-SF1 malate 85.3 4.3 9.4E-05 43.3 9.1 111 326-443 4-132 (323)
154 PRK08374 homoserine dehydrogen 85.2 4.4 9.5E-05 43.4 9.2 105 326-437 3-120 (336)
155 PRK05808 3-hydroxybutyryl-CoA 85.2 14 0.00031 37.9 12.6 32 326-369 4-35 (282)
156 PRK07066 3-hydroxybutyryl-CoA 85.2 2.3 4.9E-05 45.5 6.9 108 399-513 104-219 (321)
157 cd01339 LDH-like_MDH L-lactate 84.9 1.9 4.2E-05 44.8 6.2 117 328-467 1-141 (300)
158 cd05290 LDH_3 A subgroup of L- 84.7 2.7 5.8E-05 44.5 7.2 102 327-443 1-122 (307)
159 PRK14185 bifunctional 5,10-met 84.6 5.8 0.00012 42.2 9.5 88 304-425 136-224 (293)
160 cd01485 E1-1_like Ubiquitin ac 84.6 0.92 2E-05 44.8 3.5 39 321-370 15-53 (198)
161 PRK00094 gpsA NAD(P)H-dependen 84.2 1.8 3.9E-05 44.6 5.6 98 327-444 3-109 (325)
162 PRK07679 pyrroline-5-carboxyla 84.2 23 0.0005 36.4 13.6 108 325-457 3-111 (279)
163 PRK14169 bifunctional 5,10-met 84.0 6.5 0.00014 41.6 9.5 85 303-425 134-219 (282)
164 PRK06436 glycerate dehydrogena 83.8 9.4 0.0002 40.4 10.8 108 304-443 85-212 (303)
165 PRK12480 D-lactate dehydrogena 83.2 8.4 0.00018 41.2 10.2 139 292-464 91-256 (330)
166 PRK06141 ornithine cyclodeamin 83.2 5.6 0.00012 42.0 8.8 104 324-452 124-232 (314)
167 PRK02842 light-independent pro 83.2 7.7 0.00017 42.7 10.2 116 256-413 248-368 (427)
168 PRK06522 2-dehydropantoate 2-r 83.0 3.7 8E-05 41.8 7.2 101 327-444 2-104 (304)
169 cd01492 Aos1_SUMO Ubiquitin ac 83.0 1.1 2.4E-05 44.3 3.2 76 321-413 17-96 (197)
170 TIGR01285 nifN nitrogenase mol 82.9 2.3 5E-05 46.9 6.1 84 313-414 299-382 (432)
171 PRK08410 2-hydroxyacid dehydro 82.6 12 0.00025 39.7 10.9 135 292-462 85-252 (311)
172 PRK07530 3-hydroxybutyryl-CoA 82.3 6.9 0.00015 40.4 8.9 32 326-369 5-36 (292)
173 PRK14167 bifunctional 5,10-met 82.3 8 0.00017 41.2 9.5 88 304-425 136-224 (297)
174 COG0039 Mdh Malate/lactate deh 82.2 4.3 9.4E-05 43.5 7.5 108 326-456 1-126 (313)
175 PRK15116 sulfur acceptor prote 82.0 4.2 9.2E-05 42.5 7.3 107 321-445 26-135 (268)
176 cd01483 E1_enzyme_family Super 82.0 1.9 4.2E-05 39.6 4.3 33 327-370 1-33 (143)
177 cd01487 E1_ThiF_like E1_ThiF_l 81.8 1.9 4.1E-05 41.8 4.3 32 327-369 1-32 (174)
178 PTZ00345 glycerol-3-phosphate 81.8 4.8 0.0001 43.8 7.9 24 323-346 9-32 (365)
179 PRK14182 bifunctional 5,10-met 81.7 9.1 0.0002 40.5 9.6 83 305-425 137-220 (282)
180 PRK14181 bifunctional 5,10-met 81.7 9.2 0.0002 40.6 9.6 89 303-425 131-220 (287)
181 cd00755 YgdL_like Family of ac 81.6 1.7 3.7E-05 44.3 4.1 38 321-369 7-44 (231)
182 TIGR00507 aroE shikimate 5-deh 81.6 3.4 7.4E-05 42.4 6.4 57 293-369 93-149 (270)
183 TIGR01381 E1_like_apg7 E1-like 81.6 1.5 3.2E-05 51.1 4.0 40 321-371 334-373 (664)
184 PRK14173 bifunctional 5,10-met 81.5 6.4 0.00014 41.7 8.4 84 304-425 134-218 (287)
185 PRK15469 ghrA bifunctional gly 81.4 12 0.00025 39.8 10.4 158 303-494 98-277 (312)
186 TIGR03140 AhpF alkyl hydropero 81.4 2.2 4.7E-05 47.8 5.3 86 258-346 137-233 (515)
187 cd05293 LDH_1 A subgroup of L- 81.4 4.8 0.0001 42.7 7.5 125 326-468 4-147 (312)
188 PRK14180 bifunctional 5,10-met 81.2 6.7 0.00015 41.5 8.4 86 302-425 135-221 (282)
189 TIGR01408 Ube1 ubiquitin-activ 81.1 0.68 1.5E-05 56.4 1.2 43 321-369 415-457 (1008)
190 PLN02616 tetrahydrofolate dehy 81.0 6.2 0.00013 43.1 8.3 85 303-425 209-294 (364)
191 TIGR02279 PaaC-3OHAcCoADH 3-hy 80.9 12 0.00026 42.3 10.9 37 479-515 185-221 (503)
192 PRK14618 NAD(P)H-dependent gly 80.7 2.6 5.6E-05 44.2 5.2 95 326-443 5-107 (328)
193 PLN03139 formate dehydrogenase 80.7 11 0.00025 41.3 10.3 143 320-494 194-342 (386)
194 PRK09310 aroDE bifunctional 3- 80.7 3.3 7.1E-05 46.4 6.3 48 310-369 317-364 (477)
195 cd05294 LDH-like_MDH_nadp A la 80.7 8.4 0.00018 40.7 9.0 100 326-443 1-124 (309)
196 PRK09599 6-phosphogluconate de 80.1 8.9 0.00019 39.9 8.9 93 327-443 2-97 (301)
197 PRK06487 glycerate dehydrogena 80.1 14 0.0003 39.3 10.4 186 292-521 88-308 (317)
198 PRK01710 murD UDP-N-acetylmura 79.8 11 0.00025 41.5 10.0 35 323-369 12-46 (458)
199 PRK06407 ornithine cyclodeamin 79.7 11 0.00024 39.7 9.5 105 324-453 116-226 (301)
200 PRK06153 hypothetical protein; 79.5 3.4 7.4E-05 45.5 5.8 161 250-443 111-278 (393)
201 PRK06476 pyrroline-5-carboxyla 79.4 28 0.00061 35.2 12.1 95 327-443 2-96 (258)
202 PRK15317 alkyl hydroperoxide r 79.2 3.1 6.7E-05 46.6 5.5 85 273-369 148-243 (517)
203 PRK07340 ornithine cyclodeamin 79.2 14 0.0003 38.9 10.1 104 323-452 123-230 (304)
204 PRK09880 L-idonate 5-dehydroge 79.1 19 0.00042 37.5 11.1 46 311-368 157-202 (343)
205 TIGR02371 ala_DH_arch alanine 79.1 13 0.00027 39.6 9.8 105 324-453 127-236 (325)
206 KOG1495 Lactate dehydrogenase 78.9 5.1 0.00011 42.6 6.5 131 320-473 15-169 (332)
207 PRK10886 DnaA initiator-associ 78.9 8.5 0.00018 38.4 7.9 148 323-522 39-187 (196)
208 TIGR03366 HpnZ_proposed putati 78.8 17 0.00038 36.8 10.4 47 310-368 107-153 (280)
209 PRK07680 late competence prote 78.5 4.5 9.8E-05 41.3 6.1 98 327-444 2-100 (273)
210 cd05292 LDH_2 A subgroup of L- 78.5 6.3 0.00014 41.5 7.3 126 327-469 2-144 (308)
211 PRK08268 3-hydroxy-acyl-CoA de 78.5 6.6 0.00014 44.4 7.9 103 404-515 112-223 (507)
212 PF01113 DapB_N: Dihydrodipico 78.4 4.1 8.8E-05 37.2 5.1 96 326-438 1-97 (124)
213 PF07992 Pyr_redox_2: Pyridine 78.0 3.6 7.8E-05 38.7 4.8 32 327-370 1-32 (201)
214 PRK14186 bifunctional 5,10-met 77.9 14 0.0003 39.5 9.5 84 304-425 137-221 (297)
215 PRK15409 bifunctional glyoxyla 77.6 14 0.0003 39.4 9.6 141 292-464 88-258 (323)
216 PRK11790 D-3-phosphoglycerate 77.2 34 0.00073 37.8 12.7 192 290-522 95-317 (409)
217 COG0345 ProC Pyrroline-5-carbo 77.1 12 0.00026 39.3 8.7 106 326-458 2-108 (266)
218 KOG2337 Ubiquitin activating E 76.9 2.1 4.6E-05 48.6 3.3 38 323-371 338-375 (669)
219 PRK06823 ornithine cyclodeamin 76.8 17 0.00037 38.7 9.9 105 324-453 127-236 (315)
220 PRK13581 D-3-phosphoglycerate 76.7 35 0.00075 38.9 12.9 195 292-524 86-305 (526)
221 PLN02897 tetrahydrofolate dehy 76.6 10 0.00022 41.3 8.2 85 303-425 192-277 (345)
222 PRK12490 6-phosphogluconate de 76.6 12 0.00026 38.9 8.7 93 327-443 2-97 (299)
223 COG0476 ThiF Dinucleotide-util 76.5 4.3 9.4E-05 41.2 5.2 56 287-369 8-63 (254)
224 COG0686 Ald Alanine dehydrogen 76.5 4 8.6E-05 44.1 5.0 106 323-452 166-290 (371)
225 COG0190 FolD 5,10-methylene-te 75.8 12 0.00026 39.8 8.3 119 269-425 90-219 (283)
226 TIGR01327 PGDH D-3-phosphoglyc 75.8 21 0.00046 40.5 10.9 194 292-522 84-302 (525)
227 PLN02527 aspartate carbamoyltr 75.4 59 0.0013 34.6 13.5 136 257-415 87-228 (306)
228 PRK13938 phosphoheptose isomer 75.4 16 0.00034 36.5 8.7 105 324-443 44-151 (196)
229 KOG0029 Amine oxidase [Seconda 75.2 1.4 3E-05 49.8 1.4 25 323-347 13-37 (501)
230 KOG0069 Glyoxylate/hydroxypyru 74.8 17 0.00036 39.5 9.3 109 303-440 120-253 (336)
231 PRK08229 2-dehydropantoate 2-r 74.6 6.3 0.00014 41.2 6.0 102 326-444 3-111 (341)
232 KOG0685 Flavin-containing amin 74.5 1.5 3.3E-05 49.3 1.4 26 321-346 17-42 (498)
233 PRK00141 murD UDP-N-acetylmura 74.1 14 0.0003 41.1 8.8 36 322-369 12-47 (473)
234 PRK08618 ornithine cyclodeamin 73.8 17 0.00037 38.5 9.0 105 324-455 126-236 (325)
235 cd01491 Ube1_repeat1 Ubiquitin 73.7 3.2 7E-05 43.8 3.6 38 321-369 15-52 (286)
236 PRK02472 murD UDP-N-acetylmura 73.6 12 0.00025 40.8 7.9 35 323-369 3-37 (447)
237 PF13738 Pyr_redox_3: Pyridine 73.4 3.9 8.4E-05 38.8 3.7 30 329-369 1-30 (203)
238 PF00070 Pyr_redox: Pyridine n 73.2 7.3 0.00016 32.3 4.9 35 327-373 1-35 (80)
239 PLN02602 lactate dehydrogenase 72.9 12 0.00025 40.7 7.6 123 326-467 38-180 (350)
240 PRK06932 glycerate dehydrogena 72.9 28 0.00061 36.9 10.4 137 321-495 143-289 (314)
241 PF02737 3HCDH_N: 3-hydroxyacy 72.7 5.3 0.00011 38.9 4.6 111 327-456 1-125 (180)
242 PLN02545 3-hydroxybutyryl-CoA 72.7 18 0.00039 37.4 8.7 32 326-369 5-36 (295)
243 PRK07502 cyclohexadienyl dehyd 72.6 20 0.00043 37.3 9.1 34 326-369 7-40 (307)
244 cd01486 Apg7 Apg7 is an E1-lik 71.9 4.9 0.00011 43.0 4.4 32 327-369 1-32 (307)
245 PRK12439 NAD(P)H-dependent gly 71.8 5.6 0.00012 42.4 4.9 22 325-346 7-28 (341)
246 PLN02819 lysine-ketoglutarate 71.7 13 0.00029 45.8 8.5 99 325-429 203-326 (1042)
247 cd08237 ribitol-5-phosphate_DH 71.7 61 0.0013 34.0 12.5 35 324-368 163-197 (341)
248 cd01484 E1-2_like Ubiquitin ac 71.5 5.2 0.00011 40.9 4.4 32 327-369 1-32 (234)
249 PRK07231 fabG 3-ketoacyl-(acyl 71.4 9.1 0.0002 37.2 5.9 36 322-369 2-38 (251)
250 PRK07877 hypothetical protein; 71.3 8 0.00017 45.8 6.4 101 321-440 103-229 (722)
251 cd01974 Nitrogenase_MoFe_beta 71.0 11 0.00024 41.5 7.1 104 313-443 291-405 (435)
252 PRK06046 alanine dehydrogenase 70.3 26 0.00057 37.2 9.5 104 324-453 128-237 (326)
253 TIGR00873 gnd 6-phosphoglucona 69.7 11 0.00025 42.2 6.9 95 327-441 1-99 (467)
254 TIGR01771 L-LDH-NAD L-lactate 69.5 11 0.00023 39.8 6.3 123 330-467 1-139 (299)
255 PLN02520 bifunctional 3-dehydr 69.5 10 0.00022 43.2 6.5 38 320-369 374-411 (529)
256 PF03446 NAD_binding_2: NAD bi 69.5 8.2 0.00018 36.5 5.0 102 326-455 2-107 (163)
257 cd01488 Uba3_RUB Ubiquitin act 69.2 5.9 0.00013 41.9 4.3 32 327-369 1-32 (291)
258 PTZ00142 6-phosphogluconate de 69.2 8.7 0.00019 43.2 5.8 98 326-443 2-104 (470)
259 PF01494 FAD_binding_3: FAD bi 69.0 6.5 0.00014 39.7 4.5 35 326-372 2-36 (356)
260 TIGR02622 CDP_4_6_dhtase CDP-g 69.0 13 0.00029 38.8 6.9 106 323-440 2-127 (349)
261 COG2423 Predicted ornithine cy 68.5 23 0.0005 38.3 8.6 122 308-455 115-241 (330)
262 PRK14852 hypothetical protein; 67.8 20 0.00043 44.0 8.7 38 321-369 328-365 (989)
263 TIGR03693 ocin_ThiF_like putat 66.6 24 0.00053 41.2 8.8 132 250-416 68-215 (637)
264 PRK09754 phenylpropionate diox 66.5 8.1 0.00018 41.5 4.8 36 324-369 2-37 (396)
265 cd00300 LDH_like L-lactate deh 65.9 18 0.0004 37.9 7.1 123 328-467 1-141 (300)
266 PRK01713 ornithine carbamoyltr 65.9 42 0.00092 36.2 10.0 138 256-413 91-233 (334)
267 PRK14620 NAD(P)H-dependent gly 65.8 15 0.00032 38.5 6.5 31 327-369 2-32 (326)
268 PLN00112 malate dehydrogenase 65.8 24 0.00051 39.7 8.3 111 326-443 101-229 (444)
269 COG1179 Dinucleotide-utilizing 65.0 5.8 0.00013 41.4 3.2 41 322-373 27-67 (263)
270 PRK07589 ornithine cyclodeamin 64.6 74 0.0016 34.6 11.6 105 324-453 128-239 (346)
271 TIGR01214 rmlD dTDP-4-dehydror 64.4 27 0.00058 35.0 7.7 60 327-416 1-61 (287)
272 PF03447 NAD_binding_3: Homose 64.3 11 0.00024 33.5 4.4 88 332-437 1-88 (117)
273 cd01489 Uba2_SUMO Ubiquitin ac 64.2 9.2 0.0002 40.9 4.6 32 327-369 1-32 (312)
274 COG0240 GpsA Glycerol-3-phosph 64.1 13 0.00029 40.2 5.8 82 326-428 2-92 (329)
275 TIGR01283 nifE nitrogenase mol 64.0 14 0.00029 41.1 6.1 84 314-412 315-402 (456)
276 PF02423 OCD_Mu_crystall: Orni 63.3 17 0.00038 38.4 6.5 103 325-452 128-237 (313)
277 COG5322 Predicted dehydrogenas 63.2 11 0.00024 40.1 4.8 48 299-346 141-189 (351)
278 TIGR00465 ilvC ketol-acid redu 63.1 26 0.00057 37.4 7.7 25 323-347 1-25 (314)
279 PRK00536 speE spermidine synth 62.8 13 0.00027 39.0 5.2 101 326-469 74-175 (262)
280 COG1250 FadB 3-hydroxyacyl-CoA 62.2 2E+02 0.0044 31.0 14.1 113 397-518 101-222 (307)
281 PRK11730 fadB multifunctional 62.0 27 0.00058 41.3 8.3 108 399-515 413-528 (715)
282 KOG2304 3-hydroxyacyl-CoA dehy 61.9 7.1 0.00015 40.7 3.1 33 325-369 11-43 (298)
283 PRK06270 homoserine dehydrogen 61.8 56 0.0012 35.0 10.0 105 326-437 3-123 (341)
284 TIGR01292 TRX_reduct thioredox 61.7 9.5 0.00021 38.1 4.0 31 327-369 2-32 (300)
285 PRK06719 precorrin-2 dehydroge 61.6 12 0.00026 35.8 4.5 36 322-369 10-45 (157)
286 TIGR01470 cysG_Nterm siroheme 61.4 12 0.00025 37.4 4.5 36 322-369 6-41 (205)
287 PRK06718 precorrin-2 dehydroge 61.0 12 0.00026 37.2 4.5 35 322-368 7-41 (202)
288 PRK11883 protoporphyrinogen ox 60.8 5.5 0.00012 42.6 2.3 22 326-347 1-22 (451)
289 PRK11199 tyrA bifunctional cho 60.2 39 0.00085 36.6 8.6 33 325-369 98-131 (374)
290 COG1052 LdhA Lactate dehydroge 60.0 92 0.002 33.5 11.2 93 319-441 140-237 (324)
291 PRK06928 pyrroline-5-carboxyla 59.9 36 0.00078 35.1 7.9 36 326-369 2-37 (277)
292 TIGR03376 glycerol3P_DH glycer 59.6 16 0.00036 39.4 5.5 20 327-346 1-20 (342)
293 PRK12409 D-amino acid dehydrog 59.4 12 0.00025 40.0 4.4 33 326-370 2-34 (410)
294 PRK06249 2-dehydropantoate 2-r 59.4 26 0.00056 36.6 6.9 103 324-444 4-110 (313)
295 PLN02688 pyrroline-5-carboxyla 59.2 39 0.00084 34.1 7.9 94 327-443 2-98 (266)
296 PF05834 Lycopene_cycl: Lycope 59.1 12 0.00026 40.1 4.4 35 328-372 2-36 (374)
297 TIGR03169 Nterm_to_SelD pyridi 58.8 6.5 0.00014 41.3 2.3 36 327-371 1-36 (364)
298 PRK12429 3-hydroxybutyrate deh 58.7 36 0.00079 33.1 7.4 35 323-369 2-37 (258)
299 PRK15181 Vi polysaccharide bio 58.2 42 0.00091 35.3 8.2 105 319-440 9-141 (348)
300 TIGR02028 ChlP geranylgeranyl 58.2 11 0.00025 40.6 4.1 31 327-369 2-32 (398)
301 PRK07417 arogenate dehydrogena 57.7 43 0.00094 34.5 8.0 31 327-369 2-32 (279)
302 COG2072 TrkA Predicted flavopr 57.6 13 0.00029 41.1 4.6 36 324-370 7-42 (443)
303 KOG2018 Predicted dinucleotide 57.3 12 0.00027 40.5 4.0 40 321-371 70-109 (430)
304 PTZ00245 ubiquitin activating 57.1 11 0.00024 39.9 3.5 73 321-411 22-98 (287)
305 TIGR02023 BchP-ChlP geranylger 57.0 13 0.00027 39.8 4.2 31 327-369 2-32 (388)
306 PF13454 NAD_binding_9: FAD-NA 56.8 11 0.00025 35.3 3.4 36 329-371 1-36 (156)
307 PRK06847 hypothetical protein; 56.6 14 0.00031 38.6 4.4 33 325-369 4-36 (375)
308 PRK07819 3-hydroxybutyryl-CoA 56.5 14 0.00031 38.4 4.4 32 326-369 6-37 (286)
309 KOG2250 Glutamate/leucine/phen 56.1 1E+02 0.0022 35.3 11.0 185 251-455 159-379 (514)
310 cd00377 ICL_PEPM Members of th 55.7 2.5E+02 0.0053 28.8 17.0 43 420-466 184-226 (243)
311 cd05007 SIS_Etherase N-acetylm 55.7 21 0.00046 36.8 5.4 37 405-443 118-156 (257)
312 PRK06184 hypothetical protein; 55.0 15 0.00032 40.8 4.5 35 324-370 2-36 (502)
313 PLN02172 flavin-containing mon 54.9 16 0.00035 40.7 4.7 25 322-346 7-31 (461)
314 TIGR01505 tartro_sem_red 2-hyd 54.8 43 0.00093 34.5 7.5 31 327-369 1-31 (291)
315 PRK12771 putative glutamate sy 54.8 20 0.00044 40.7 5.5 35 323-369 135-169 (564)
316 PRK12570 N-acetylmuramic acid- 54.7 47 0.001 35.1 7.9 37 405-443 127-165 (296)
317 PRK14106 murD UDP-N-acetylmura 54.7 17 0.00037 39.5 4.8 36 322-369 2-37 (450)
318 PRK13512 coenzyme A disulfide 54.6 12 0.00027 40.8 3.7 33 327-369 3-35 (438)
319 PF01266 DAO: FAD dependent ox 54.6 19 0.00042 36.4 4.8 32 327-370 1-32 (358)
320 PRK05866 short chain dehydroge 54.5 30 0.00065 35.6 6.3 39 320-369 35-73 (293)
321 PRK07236 hypothetical protein; 54.4 18 0.00038 38.5 4.7 24 323-346 4-27 (386)
322 TIGR03026 NDP-sugDHase nucleot 54.3 42 0.00091 36.6 7.7 31 327-369 2-32 (411)
323 PRK05479 ketol-acid reductoiso 54.3 45 0.00097 36.1 7.7 26 322-347 14-39 (330)
324 cd01490 Ube1_repeat2 Ubiquitin 54.2 20 0.00044 40.2 5.3 37 327-369 1-37 (435)
325 PRK07233 hypothetical protein; 54.2 14 0.0003 39.3 3.8 31 327-369 1-31 (434)
326 PF03435 Saccharop_dh: Sacchar 54.1 6.3 0.00014 42.2 1.3 91 328-437 1-96 (386)
327 PRK08163 salicylate hydroxylas 53.9 16 0.00034 38.7 4.3 22 325-346 4-25 (396)
328 PRK01438 murD UDP-N-acetylmura 53.7 19 0.00041 39.7 5.0 28 319-346 10-37 (480)
329 PRK09564 coenzyme A disulfide 53.4 19 0.00042 39.0 4.9 37 326-372 1-37 (444)
330 cd01493 APPBP1_RUB Ubiquitin a 53.3 16 0.00034 40.8 4.2 38 321-369 16-53 (425)
331 PF13450 NAD_binding_8: NAD(P) 52.8 21 0.00045 29.3 3.9 30 330-371 1-30 (68)
332 TIGR00670 asp_carb_tr aspartat 52.8 3.1E+02 0.0068 29.2 15.7 136 256-415 85-226 (301)
333 COG0499 SAM1 S-adenosylhomocys 52.4 55 0.0012 36.3 8.0 119 299-452 186-306 (420)
334 TIGR01316 gltA glutamate synth 52.4 20 0.00043 39.6 4.8 36 322-369 130-165 (449)
335 cd05006 SIS_GmhA Phosphoheptos 52.2 83 0.0018 30.0 8.5 22 405-428 101-122 (177)
336 PRK12769 putative oxidoreducta 52.0 18 0.00039 41.9 4.6 34 324-369 326-359 (654)
337 PRK07364 2-octaprenyl-6-methox 51.8 16 0.00035 38.9 3.9 33 325-369 18-50 (415)
338 PRK06475 salicylate hydroxylas 51.6 16 0.00035 39.0 4.0 21 326-346 3-23 (400)
339 PRK09126 hypothetical protein; 51.5 18 0.00039 38.2 4.2 33 325-369 3-35 (392)
340 PRK05993 short chain dehydroge 51.3 34 0.00074 34.4 6.0 32 326-369 5-37 (277)
341 PLN02268 probable polyamine ox 51.1 7.8 0.00017 41.8 1.5 20 327-346 2-21 (435)
342 COG0644 FixC Dehydrogenases (f 51.1 20 0.00042 38.7 4.5 35 326-372 4-38 (396)
343 PRK11559 garR tartronate semia 50.7 59 0.0013 33.4 7.7 32 326-369 3-34 (296)
344 PRK05749 3-deoxy-D-manno-octul 50.7 47 0.001 35.7 7.3 37 396-437 312-349 (425)
345 TIGR01181 dTDP_gluc_dehyt dTDP 50.7 72 0.0016 32.0 8.2 78 327-416 1-84 (317)
346 PRK12810 gltD glutamate syntha 50.7 21 0.00045 39.6 4.7 34 324-369 142-175 (471)
347 TIGR01790 carotene-cycl lycope 50.6 18 0.00039 38.2 4.1 31 328-370 2-32 (388)
348 PRK03369 murD UDP-N-acetylmura 50.6 81 0.0018 35.3 9.3 89 323-436 10-98 (488)
349 PRK12829 short chain dehydroge 50.5 52 0.0011 32.2 7.0 37 322-369 8-44 (264)
350 COG0565 LasT rRNA methylase [T 50.5 38 0.00083 35.3 6.2 74 324-417 3-84 (242)
351 PRK12828 short chain dehydroge 50.4 28 0.00061 33.3 5.1 36 322-369 4-40 (239)
352 cd01968 Nitrogenase_NifE_I Nit 50.2 23 0.00051 38.6 4.9 85 314-414 276-365 (410)
353 PLN02240 UDP-glucose 4-epimera 50.2 35 0.00077 35.3 6.1 107 322-440 2-132 (352)
354 PRK04965 NADH:flavorubredoxin 50.1 16 0.00034 38.9 3.5 35 326-370 3-37 (377)
355 PRK00048 dihydrodipicolinate r 50.0 99 0.0021 31.7 9.2 88 326-438 2-90 (257)
356 PF01408 GFO_IDH_MocA: Oxidore 49.9 28 0.00062 30.3 4.6 90 327-437 2-91 (120)
357 PRK04176 ribulose-1,5-biphosph 49.9 20 0.00043 36.9 4.1 35 324-370 24-58 (257)
358 PLN02695 GDP-D-mannose-3',5'-e 49.8 52 0.0011 35.2 7.4 97 324-440 20-137 (370)
359 PRK00683 murD UDP-N-acetylmura 49.6 78 0.0017 34.5 8.8 108 325-467 3-110 (418)
360 PRK14806 bifunctional cyclohex 49.6 41 0.00089 39.4 7.1 93 326-440 4-97 (735)
361 PRK12779 putative bifunctional 49.5 22 0.00047 43.5 4.9 40 323-374 304-347 (944)
362 PF04320 DUF469: Protein with 49.5 14 0.00031 33.6 2.6 32 247-278 27-61 (101)
363 PRK13937 phosphoheptose isomer 49.4 65 0.0014 31.4 7.4 37 405-443 106-144 (188)
364 PRK06753 hypothetical protein; 49.1 21 0.00045 37.5 4.2 20 327-346 2-21 (373)
365 TIGR02032 GG-red-SF geranylger 49.1 21 0.00046 35.3 4.1 33 327-371 2-34 (295)
366 PRK07045 putative monooxygenas 49.0 21 0.00046 37.8 4.3 21 326-346 6-26 (388)
367 COG1086 Predicted nucleoside-d 48.5 30 0.00066 40.1 5.5 75 322-414 247-334 (588)
368 TIGR00031 UDP-GALP_mutase UDP- 48.3 22 0.00049 38.9 4.4 31 327-369 3-33 (377)
369 PF06690 DUF1188: Protein of u 48.2 34 0.00073 35.8 5.3 145 319-518 38-187 (252)
370 TIGR00441 gmhA phosphoheptose 48.2 1.1E+02 0.0024 28.8 8.6 37 405-443 79-117 (154)
371 PRK03515 ornithine carbamoyltr 48.1 1.6E+02 0.0036 31.9 10.8 138 256-413 90-233 (336)
372 PRK13301 putative L-aspartate 47.7 29 0.00064 36.6 4.9 117 326-466 3-122 (267)
373 PLN02676 polyamine oxidase 47.5 49 0.0011 37.2 7.0 36 324-370 25-60 (487)
374 PRK12266 glpD glycerol-3-phosp 47.4 22 0.00047 40.0 4.3 33 326-370 7-39 (508)
375 PRK07608 ubiquinone biosynthes 47.3 21 0.00046 37.5 4.0 32 326-369 6-37 (388)
376 PRK06416 dihydrolipoamide dehy 47.3 22 0.00048 38.9 4.2 33 326-370 5-37 (462)
377 PRK05732 2-octaprenyl-6-methox 47.2 26 0.00056 36.9 4.6 36 325-369 3-38 (395)
378 PRK06138 short chain dehydroge 47.2 43 0.00093 32.6 5.8 36 322-369 2-38 (252)
379 PLN00093 geranylgeranyl diphos 47.1 22 0.00048 39.5 4.2 21 326-346 40-60 (450)
380 PF13241 NAD_binding_7: Putati 47.0 16 0.00035 32.1 2.6 37 322-370 4-40 (103)
381 COG1063 Tdh Threonine dehydrog 46.7 36 0.00077 36.4 5.6 97 299-414 143-247 (350)
382 TIGR01179 galE UDP-glucose-4-e 46.4 81 0.0017 31.7 7.8 97 327-438 1-119 (328)
383 PF01946 Thi4: Thi4 family; PD 46.1 30 0.00065 35.8 4.6 35 324-370 16-50 (230)
384 TIGR00274 N-acetylmuramic acid 46.0 45 0.00097 35.3 6.1 38 405-444 126-165 (291)
385 PRK07424 bifunctional sterol d 45.8 32 0.00069 38.0 5.1 56 288-369 156-211 (406)
386 KOG2012 Ubiquitin activating e 45.8 12 0.00026 44.9 2.0 116 321-463 426-552 (1013)
387 PRK09987 dTDP-4-dehydrorhamnos 45.7 76 0.0016 32.7 7.6 86 327-440 2-104 (299)
388 PTZ00318 NADH dehydrogenase-li 45.7 17 0.00037 39.6 3.0 36 322-369 7-42 (424)
389 TIGR01984 UbiH 2-polyprenyl-6- 45.7 21 0.00046 37.4 3.6 20 328-347 2-21 (382)
390 cd04951 GT1_WbdM_like This fam 45.6 1.7E+02 0.0038 29.3 10.1 37 396-437 255-291 (360)
391 PRK07251 pyridine nucleotide-d 45.6 26 0.00056 38.1 4.4 33 326-370 4-36 (438)
392 TIGR00658 orni_carb_tr ornithi 45.6 1.9E+02 0.0041 30.8 10.7 113 283-413 107-224 (304)
393 KOG0743 AAA+-type ATPase [Post 45.6 33 0.00071 38.7 5.2 104 193-333 241-345 (457)
394 PRK06841 short chain dehydroge 45.5 39 0.00085 33.1 5.3 36 322-369 12-48 (255)
395 PF00743 FMO-like: Flavin-bind 45.5 25 0.00053 40.2 4.3 32 326-369 2-33 (531)
396 PLN02463 lycopene beta cyclase 45.4 24 0.00052 39.3 4.2 32 326-369 29-60 (447)
397 COG0654 UbiH 2-polyprenyl-6-me 45.2 26 0.00057 37.5 4.3 33 325-369 2-34 (387)
398 PRK11749 dihydropyrimidine deh 45.2 28 0.0006 38.3 4.6 34 324-369 139-172 (457)
399 PRK09186 flagellin modificatio 45.1 50 0.0011 32.2 6.0 35 323-369 2-37 (256)
400 PRK11259 solA N-methyltryptoph 44.9 27 0.00059 36.5 4.3 34 325-370 3-36 (376)
401 TIGR01757 Malate-DH_plant mala 44.9 73 0.0016 35.2 7.7 110 325-443 44-173 (387)
402 PLN02350 phosphogluconate dehy 44.8 59 0.0013 37.0 7.1 97 327-443 8-110 (493)
403 PRK12778 putative bifunctional 44.8 31 0.00068 40.7 5.2 35 323-369 429-463 (752)
404 PRK00414 gmhA phosphoheptose i 44.7 1E+02 0.0023 30.3 8.1 36 405-442 111-148 (192)
405 cd01715 ETF_alpha The electron 44.6 2.1E+02 0.0045 27.2 9.9 82 325-436 30-111 (168)
406 PRK06392 homoserine dehydrogen 44.6 91 0.002 33.6 8.2 82 327-414 2-90 (326)
407 PRK08773 2-octaprenyl-3-methyl 44.5 22 0.00049 37.7 3.6 34 325-370 6-39 (392)
408 PRK06182 short chain dehydroge 44.4 37 0.00081 33.9 5.0 77 324-416 2-85 (273)
409 PRK07588 hypothetical protein; 44.4 27 0.00058 37.1 4.2 21 326-346 1-21 (391)
410 PRK07523 gluconate 5-dehydroge 44.4 64 0.0014 31.7 6.6 36 322-369 7-43 (255)
411 PRK10157 putative oxidoreducta 44.4 25 0.00055 38.4 4.1 21 326-346 6-26 (428)
412 PRK05441 murQ N-acetylmuramic 44.3 45 0.00097 35.3 5.8 38 405-444 131-170 (299)
413 PRK12562 ornithine carbamoyltr 44.1 2E+02 0.0043 31.3 10.6 138 256-413 90-233 (334)
414 PRK12491 pyrroline-5-carboxyla 44.0 50 0.0011 34.3 6.0 35 326-368 3-37 (272)
415 PRK12831 putative oxidoreducta 44.0 29 0.00063 38.6 4.6 34 324-369 139-172 (464)
416 TIGR01373 soxB sarcosine oxida 44.0 34 0.00074 36.5 4.9 38 324-371 29-66 (407)
417 TIGR01988 Ubi-OHases Ubiquinon 43.9 25 0.00055 36.6 3.9 31 328-370 2-32 (385)
418 PRK12814 putative NADPH-depend 43.8 28 0.0006 40.5 4.5 34 324-369 192-225 (652)
419 PRK08244 hypothetical protein; 43.8 27 0.00058 38.7 4.2 21 326-346 3-23 (493)
420 PRK06171 sorbitol-6-phosphate 43.7 95 0.0021 30.7 7.8 76 322-415 6-87 (266)
421 TIGR03736 PRTRC_ThiF PRTRC sys 43.4 36 0.00078 35.3 4.8 42 324-370 10-55 (244)
422 PRK10892 D-arabinose 5-phospha 43.3 1.3E+02 0.0027 31.6 8.9 83 326-443 48-132 (326)
423 PRK09853 putative selenate red 43.2 29 0.00062 42.9 4.6 35 323-369 537-571 (1019)
424 TIGR01377 soxA_mon sarcosine o 43.1 30 0.00065 36.2 4.3 33 327-371 2-34 (380)
425 PRK13403 ketol-acid reductoiso 43.1 53 0.0011 35.8 6.1 37 321-369 12-48 (335)
426 PRK13394 3-hydroxybutyrate deh 43.1 77 0.0017 31.0 6.9 36 322-369 4-40 (262)
427 TIGR01408 Ube1 ubiquitin-activ 43.1 21 0.00045 44.0 3.5 39 321-370 20-58 (1008)
428 PRK12770 putative glutamate sy 43.1 37 0.00079 35.9 4.9 34 324-369 17-50 (352)
429 TIGR02053 MerA mercuric reduct 43.0 29 0.00062 38.1 4.3 30 328-369 3-32 (463)
430 PF02558 ApbA: Ketopantoate re 42.9 36 0.00078 31.1 4.3 99 328-442 1-103 (151)
431 COG0771 MurD UDP-N-acetylmuram 42.8 1.4E+02 0.0031 33.7 9.6 36 322-369 4-39 (448)
432 PRK08243 4-hydroxybenzoate 3-m 42.8 31 0.00067 36.8 4.4 33 325-369 2-34 (392)
433 PRK05714 2-octaprenyl-3-methyl 42.7 24 0.00052 37.6 3.5 32 326-369 3-34 (405)
434 PF13407 Peripla_BP_4: Peripla 42.6 74 0.0016 31.0 6.7 145 147-321 52-206 (257)
435 PRK11101 glpA sn-glycerol-3-ph 42.5 30 0.00065 39.3 4.4 33 325-369 6-38 (546)
436 TIGR01789 lycopene_cycl lycope 42.5 37 0.00081 36.5 5.0 36 328-373 2-37 (370)
437 PRK06199 ornithine cyclodeamin 42.4 1.3E+02 0.0028 33.1 9.1 101 324-452 154-267 (379)
438 PLN02366 spermidine synthase 42.3 50 0.0011 35.2 5.8 92 325-428 92-193 (308)
439 PRK08020 ubiF 2-octaprenyl-3-m 42.2 28 0.0006 36.8 3.9 33 325-369 5-37 (391)
440 PRK06185 hypothetical protein; 42.0 30 0.00064 36.8 4.1 34 325-370 6-39 (407)
441 PRK08849 2-octaprenyl-3-methyl 42.0 33 0.00071 36.6 4.4 32 326-369 4-35 (384)
442 PF13738 Pyr_redox_3: Pyridine 41.9 30 0.00065 32.7 3.7 36 322-369 164-199 (203)
443 PRK08013 oxidoreductase; Provi 41.9 31 0.00067 37.0 4.2 33 325-369 3-35 (400)
444 PLN02342 ornithine carbamoyltr 41.8 3.5E+02 0.0075 29.6 12.1 132 256-413 130-267 (348)
445 PRK08192 aspartate carbamoyltr 41.8 4.9E+02 0.011 28.3 13.2 111 292-419 121-240 (338)
446 TIGR03589 PseB UDP-N-acetylglu 41.7 66 0.0014 33.6 6.5 106 323-440 2-125 (324)
447 PRK01747 mnmC bifunctional tRN 41.6 32 0.0007 39.9 4.6 33 326-370 261-293 (662)
448 PRK13369 glycerol-3-phosphate 41.6 29 0.00062 38.8 4.1 32 326-369 7-38 (502)
449 PRK12416 protoporphyrinogen ox 41.6 17 0.00036 39.7 2.2 22 326-347 2-23 (463)
450 TIGR00292 thiazole biosynthesi 41.6 32 0.0007 35.3 4.1 37 324-372 20-56 (254)
451 PRK08010 pyridine nucleotide-d 41.6 29 0.00064 37.7 4.1 32 326-369 4-35 (441)
452 PRK07538 hypothetical protein; 41.5 31 0.00066 37.2 4.1 20 327-346 2-21 (413)
453 PRK08219 short chain dehydroge 41.5 1E+02 0.0022 29.4 7.3 22 395-416 60-82 (227)
454 PRK14694 putative mercuric red 41.5 34 0.00073 37.8 4.5 34 324-369 5-38 (468)
455 PRK06912 acoL dihydrolipoamide 41.4 32 0.00069 37.8 4.3 31 327-369 2-32 (458)
456 PRK06124 gluconate 5-dehydroge 41.3 1.1E+02 0.0023 30.1 7.6 39 320-369 6-44 (256)
457 COG1087 GalE UDP-glucose 4-epi 41.3 64 0.0014 35.0 6.3 99 327-440 2-118 (329)
458 COG1748 LYS9 Saccharopine dehy 41.2 42 0.0009 37.2 5.1 85 326-429 2-90 (389)
459 PRK07067 sorbitol dehydrogenas 41.0 29 0.00063 34.2 3.6 36 322-369 3-39 (257)
460 TIGR03088 stp2 sugar transfera 41.0 1.8E+02 0.0038 30.2 9.5 36 397-437 266-301 (374)
461 TIGR01350 lipoamide_DH dihydro 40.9 33 0.00071 37.4 4.3 30 327-368 3-32 (461)
462 PRK02102 ornithine carbamoyltr 40.8 2.6E+02 0.0056 30.3 10.9 136 257-413 92-232 (331)
463 PRK06292 dihydrolipoamide dehy 40.6 33 0.00071 37.5 4.3 32 326-369 4-35 (460)
464 PRK00711 D-amino acid dehydrog 40.6 35 0.00075 36.4 4.3 31 327-369 2-32 (416)
465 PF12831 FAD_oxidored: FAD dep 40.6 35 0.00075 37.4 4.4 33 328-372 2-34 (428)
466 PRK12826 3-ketoacyl-(acyl-carr 40.5 82 0.0018 30.4 6.6 36 322-369 3-39 (251)
467 PRK06545 prephenate dehydrogen 40.5 75 0.0016 34.2 6.8 22 326-347 1-22 (359)
468 PRK04690 murD UDP-N-acetylmura 40.4 35 0.00076 38.0 4.5 24 323-346 6-29 (468)
469 PLN02172 flavin-containing mon 40.4 34 0.00074 38.2 4.4 36 323-370 202-237 (461)
470 TIGR03143 AhpF_homolog putativ 40.3 32 0.00068 39.2 4.2 32 327-370 6-37 (555)
471 TIGR01317 GOGAT_sm_gam glutama 40.2 36 0.00079 38.0 4.6 34 324-369 142-175 (485)
472 PRK11728 hydroxyglutarate oxid 39.9 37 0.0008 36.3 4.4 34 326-369 3-36 (393)
473 PLN02657 3,8-divinyl protochlo 39.9 1E+02 0.0022 33.4 7.8 108 319-438 54-180 (390)
474 PLN02427 UDP-apiose/xylose syn 39.8 92 0.002 33.1 7.4 83 316-415 5-96 (386)
475 PF13580 SIS_2: SIS domain; PD 39.8 25 0.00054 32.6 2.7 30 397-428 95-124 (138)
476 PRK05976 dihydrolipoamide dehy 39.7 36 0.00079 37.5 4.5 33 325-369 4-36 (472)
477 TIGR03315 Se_ygfK putative sel 39.6 33 0.00072 42.3 4.4 34 324-369 536-569 (1012)
478 PRK10262 thioredoxin reductase 39.5 26 0.00057 36.2 3.1 23 324-346 5-27 (321)
479 PLN02568 polyamine oxidase 39.4 19 0.0004 41.1 2.2 24 324-347 4-27 (539)
480 cd05188 MDR Medium chain reduc 39.2 74 0.0016 30.7 6.0 46 312-369 122-167 (271)
481 TIGR02082 metH 5-methyltetrahy 39.2 3.8E+02 0.0082 34.1 13.3 66 339-419 486-556 (1178)
482 TIGR03364 HpnW_proposed FAD de 39.2 35 0.00076 35.7 4.1 31 327-369 2-32 (365)
483 PRK12809 putative oxidoreducta 39.2 40 0.00088 39.1 4.9 35 324-370 309-343 (639)
484 PRK07333 2-octaprenyl-6-methox 39.2 30 0.00064 36.6 3.5 20 327-346 3-22 (403)
485 PRK08850 2-octaprenyl-6-methox 39.2 34 0.00073 36.7 4.0 33 325-369 4-36 (405)
486 PRK06834 hypothetical protein; 38.9 38 0.00083 37.9 4.5 35 324-370 2-36 (488)
487 PRK05868 hypothetical protein; 38.8 38 0.00082 36.2 4.3 21 326-346 2-22 (372)
488 PRK07494 2-octaprenyl-6-methox 38.7 34 0.00073 36.2 3.9 34 325-370 7-40 (388)
489 PRK08813 threonine dehydratase 38.6 3.8E+02 0.0083 29.2 11.9 151 149-371 57-215 (349)
490 COG0673 MviM Predicted dehydro 38.5 71 0.0015 33.0 6.1 94 325-437 3-102 (342)
491 PRK04284 ornithine carbamoyltr 38.3 2.3E+02 0.005 30.7 10.1 107 292-413 121-232 (332)
492 PRK06398 aldose dehydrogenase; 38.2 1.5E+02 0.0033 29.4 8.3 74 322-415 3-82 (258)
493 PRK08220 2,3-dihydroxybenzoate 38.1 1.5E+02 0.0033 28.8 8.1 37 322-370 5-42 (252)
494 COG1252 Ndh NADH dehydrogenase 38.1 31 0.00068 38.3 3.6 35 325-369 3-37 (405)
495 TIGR02360 pbenz_hydroxyl 4-hyd 38.0 39 0.00084 36.3 4.2 33 326-370 3-35 (390)
496 KOG3851 Sulfide:quinone oxidor 37.9 24 0.00051 38.7 2.5 25 324-348 38-62 (446)
497 COG3349 Uncharacterized conser 37.9 25 0.00054 40.0 2.8 44 326-374 1-51 (485)
498 PRK08132 FAD-dependent oxidore 37.8 36 0.00079 38.2 4.2 22 325-346 23-44 (547)
499 PRK05249 soluble pyridine nucl 37.8 38 0.00082 37.0 4.2 33 325-369 5-37 (461)
500 TIGR02437 FadB fatty oxidation 37.6 37 0.00079 40.2 4.3 104 402-514 416-527 (714)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=5.4e-216 Score=1701.74 Aligned_cols=539 Identities=66% Similarity=1.062 Sum_probs=534.7
Q ss_pred cccccccCCCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHHHHhHhhhhhhhhhhhccc
Q 007904 45 WTISVARDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDN 124 (585)
Q Consensus 45 ~~~~~l~~p~~NKGtaFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFy~ll~~~ 124 (585)
.|..+|+||++|||+|||.+||++|||||||||.|.|+|+|+.||+.+|+++++||+||+||++||+|||+|||++|++|
T Consensus 30 ~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~~~l~ky~~L~~L~~rNerLfY~~l~~n 109 (582)
T KOG1257|consen 30 RGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLTSPLAKYIYLMDLQDRNERLFYRLLIDN 109 (582)
T ss_pred CChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhHHHHHHHHhh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEeeCcccccCCCCCCcccccchhh
Q 007904 125 VEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGK 204 (585)
Q Consensus 125 ~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~iGK 204 (585)
++|+||||||||||+|||+||+|||+|+|||||++|+|||.++|+|||.++|++||||||||||||||||++|||||+||
T Consensus 110 ie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVTDGerILGLGDlG~~GmgIpvgK 189 (582)
T KOG1257|consen 110 IEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVTDGERILGLGDLGVNGMGIPVGK 189 (582)
T ss_pred HHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEeCCCceecccccccCcccceecH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCceeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHH
Q 007904 205 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF 284 (585)
Q Consensus 205 l~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af 284 (585)
++||||||||+|++|||||||||||||+||+||+|+|+|++|++|++||+|+||||+||.++|||+++||||||+++|||
T Consensus 190 L~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~~~yG~~~lIqFEDF~~~nAf 269 (582)
T KOG1257|consen 190 LALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVVQRYGPNTLIQFEDFANHNAF 269 (582)
T ss_pred HHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHHHHhCcceEEEehhccchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEE
Q 007904 285 ELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC 364 (585)
Q Consensus 285 ~lL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~ 364 (585)
++|+|||+++|||||||||||+|+|||||+|+|++|++|+|++|||+|||+||+|||+||+.+|+++ |+|+|||+++||
T Consensus 270 rlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~-Gl~~eeA~kkIw 348 (582)
T KOG1257|consen 270 RLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIANLIVMAMVKE-GLSEEEARKKIW 348 (582)
T ss_pred HHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHHHHHHHHHHc-CCCHHHHhccEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999996 999999999999
Q ss_pred EEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC
Q 007904 365 LVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 365 lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
|+|++|||+.+|+.+++++|++||+++++..+|+|||+.||||||||+|++||+|||||||+|+++|||||||||||||+
T Consensus 349 lvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Fteevl~~Ma~~~erPiIFalSNPT~ 428 (582)
T KOG1257|consen 349 LVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTEEVLRAMAKSNERPIIFALSNPTS 428 (582)
T ss_pred EEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcEEEecccCCccCCHHHHHHHHhcCCCceEEecCCCcc
Confidence 99999999999976799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCcc
Q 007904 445 QSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEE 524 (585)
Q Consensus 445 ~~E~tpeda~~wt~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~ 524 (585)
++||||||||+||+||||||||||||||+|+||+|+||||||+|+|||||||+++|++++|+|+||++||++||+.++++
T Consensus 429 ~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~yiFPGi~Lg~vlsg~~~i~D~mfl~Aae~LA~~v~~e 508 (582)
T KOG1257|consen 429 KAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAYIFPGIGLGVVLSGARRIPDEMFLAAAEALAEQVSEE 508 (582)
T ss_pred ccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCCceeEecchHHHHHHHcCCccCCHHHHHHHHHHHHhhCCHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCcccCCCCC
Q 007904 525 NFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNY 584 (585)
Q Consensus 525 ~~~~~~l~P~i~~irevs~~VA~aVa~~A~~~GvA~~~~~~~dl~~~i~~~mw~P~Y~~~ 584 (585)
++++|.||||+++||+||.+||++|+++|+++|+|+..|+|+|+++|+++.||+|+|+++
T Consensus 509 ~~~~g~lyPpl~~ir~iS~~Ia~aV~~~a~~~glA~~~p~P~d~~~~~~~~~y~~~Y~~~ 568 (582)
T KOG1257|consen 509 ELEKGRLYPPLSNIREISANIAAAVLKYAYEEGLATRYPEPKDKEKFIEESMYNPEYRNS 568 (582)
T ss_pred HhhcCCcCCChhHHHHHHHHHHHHHHHHHHhcCccccCCCcccHHHHHHhccCCcccccc
Confidence 999999999999999999999999999999999999999999999999999999999875
No 2
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-209 Score=1688.02 Aligned_cols=537 Identities=49% Similarity=0.846 Sum_probs=527.3
Q ss_pred cccccccCCCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHHHHhHhhhhhhhhhhhccc
Q 007904 45 WTISVARDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDN 124 (585)
Q Consensus 45 ~~~~~l~~p~~NKGtaFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFy~ll~~~ 124 (585)
+|..+|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||+|||+|||++|++|
T Consensus 16 ~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll~~~ 95 (563)
T PRK13529 16 RGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKPTDLEKHIYLRNLQDRNETLFYRLLSDH 95 (563)
T ss_pred cchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCchhhHHHHHhC
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEeeCcccccCCCCCCcccccchhh
Q 007904 125 VEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGK 204 (585)
Q Consensus 125 ~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~iGK 204 (585)
++|+||||||||||+|||+||++||+|||||||++|+|+|.++|+|||.++|++||||||||||||||||++||||||||
T Consensus 96 ~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I~~GK 175 (563)
T PRK13529 96 LEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGERILGIGDQGIGGMGIPIGK 175 (563)
T ss_pred HHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCceeeeccccCCCcccccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCceeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHH
Q 007904 205 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF 284 (585)
Q Consensus 205 l~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af 284 (585)
++|||+||||||++|||||||+|||||+||+||+|+||||+|++|++||+|+||||++|+.+| |+++||||||+++|||
T Consensus 176 l~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~~~af 254 (563)
T PRK13529 176 LSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQKNAR 254 (563)
T ss_pred HHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCCchHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEE
Q 007904 285 ELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC 364 (585)
Q Consensus 285 ~lL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~ 364 (585)
++|+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||++|||
T Consensus 255 ~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~-~Gl~~eeA~~~i~ 333 (563)
T PRK13529 255 RILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVR-EGLSEEEARKRFF 333 (563)
T ss_pred HHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHhcCeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999998 5999999999999
Q ss_pred EEcCCCcccCCCccCCchhchhhccccCCC---------CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcE
Q 007904 365 LVDSKGLIVSSRKDSLQHFKKPWAHEHEPV---------NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPL 435 (585)
Q Consensus 365 lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~---------~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPI 435 (585)
+||++|||+++|.+ |+++|++||++.++. .+|+|+|+.+|||||||+|+++|+|||||||+|+++|+|||
T Consensus 334 ~vD~~GLl~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPI 412 (563)
T PRK13529 334 MVDRQGLLTDDMPD-LLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPI 412 (563)
T ss_pred EEcCCCeEeCCCCc-chHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCE
Confidence 99999999999965 999999999975442 58999999999999999999999999999999999999999
Q ss_pred EEecCCCCCcCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHH
Q 007904 436 ILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASE 515 (585)
Q Consensus 436 IFaLSNPt~~~E~tpeda~~wt~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~ 515 (585)
||||||||++|||||||||+||+|||||||||||+||+|+|++++||||||+|||||||||+++++|++|||+||++||+
T Consensus 413 IFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~aAA~ 492 (563)
T PRK13529 413 IFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAH 492 (563)
T ss_pred EEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCcccCCCCCC
Q 007904 516 ALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585 (585)
Q Consensus 516 aLA~~v~~~~~~~~~l~P~i~~irevs~~VA~aVa~~A~~~GvA~~~~~~~dl~~~i~~~mw~P~Y~~~~ 585 (585)
+||+++++++++++.|||++++||+||.+||.||+++|+++|+|+. +.|+|+.+||+++||+|+|+|++
T Consensus 493 alA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~-~~~~~~~~~i~~~~w~P~Y~~~~ 561 (563)
T PRK13529 493 ALADCVPLAKPGEGALLPPVEDIREVSRAIAIAVAKAAIEEGLARE-TSDEDLEQAIEDNMWQPEYRPYR 561 (563)
T ss_pred HHHhhCccccCCCCeeECCCcchhhhHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHhcCcCCCCcccc
Confidence 9999999999999999999999999999999999999999999984 67899999999999999999874
No 3
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=3.4e-209 Score=1688.78 Aligned_cols=541 Identities=74% Similarity=1.177 Sum_probs=532.9
Q ss_pred cccccccCCCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHHHHhHhhhhhhhhhhhccc
Q 007904 45 WTISVARDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDN 124 (585)
Q Consensus 45 ~~~~~l~~p~~NKGtaFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFy~ll~~~ 124 (585)
+|..+|+||.+|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||+|||+|||+++++|
T Consensus 41 ~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll~~~ 120 (581)
T PLN03129 41 SGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALESPLAKYRALMDLQERNERLFYRVLIDN 120 (581)
T ss_pred cchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhCcccchhhhhcC
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEeeCcccccCCCCCCcccccchhh
Q 007904 125 VEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGK 204 (585)
Q Consensus 125 ~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~iGK 204 (585)
++|+||||||||||+||++||++||+|||||||++|+|+|+++|+|||.++|++||||||||||||||||++||||||||
T Consensus 121 ~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~GK 200 (581)
T PLN03129 121 IEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGDLGVQGMGIPVGK 200 (581)
T ss_pred HHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccccCCCccccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCceeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHH
Q 007904 205 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF 284 (585)
Q Consensus 205 l~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af 284 (585)
++|||+||||||++|||||||+|||||+||+||+|+||||+|++|++||+|+||||++|+.+|||+++||||||+++|||
T Consensus 201 l~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~af 280 (581)
T PLN03129 201 LDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKNAF 280 (581)
T ss_pred HHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEE
Q 007904 285 ELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC 364 (585)
Q Consensus 285 ~lL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~ 364 (585)
++|+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|+++.|+|+|||++|||
T Consensus 281 ~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~ 360 (581)
T PLN03129 281 RLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIW 360 (581)
T ss_pred HHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999998756999999999999
Q ss_pred EEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC
Q 007904 365 LVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 365 lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
+||++|||+++|.++|+++|++||++.++..+|+|+|+.+|||||||+|+++|+|||||||+|+++|+|||||||||||+
T Consensus 361 ~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~ 440 (581)
T PLN03129 361 LVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNPTS 440 (581)
T ss_pred EEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCC
Confidence 99999999999976699999999998777789999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCcc
Q 007904 445 QSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEE 524 (585)
Q Consensus 445 ~~E~tpeda~~wt~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~ 524 (585)
+|||||||||+||+|||||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++||++||++++++
T Consensus 441 ~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~Itd~m~~aAA~aLA~~v~~~ 520 (581)
T PLN03129 441 KAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQANNAYIFPGIGLGALLSGAIRVTDDMLLAAAEALAAQVTEE 520 (581)
T ss_pred CcCcCHHHHHHhhcCCEEEEeCCCCCCeeeCCeeecCccccceeeccchhhHHHhcCCcCCCHHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCcccCCCCCC
Q 007904 525 NFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 585 (585)
Q Consensus 525 ~~~~~~l~P~i~~irevs~~VA~aVa~~A~~~GvA~~~~~~~dl~~~i~~~mw~P~Y~~~~ 585 (585)
++..+.|||++++||+||.+||.||+++|+++|+|+..++|+|+.+||+++||+|+|+|++
T Consensus 521 ~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~G~A~~~~~~~~~~~~i~~~mw~P~Y~~~~ 581 (581)
T PLN03129 521 ELAKGAIYPPFSRIRDISAHVAAAVAAKAYEEGLATRLPRPEDLVEYAESCMYSPVYRPYR 581 (581)
T ss_pred cCCCCeecCCCcchhHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHcCcCCCCCCCC
Confidence 9999999999999999999999999999999999987777899999999999999999875
No 4
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=1.1e-207 Score=1671.05 Aligned_cols=535 Identities=49% Similarity=0.845 Sum_probs=523.0
Q ss_pred ccccccccCCCCCcCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHHHHhHhhhhhhhhhhhcc
Q 007904 44 PWTISVARDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLID 123 (585)
Q Consensus 44 ~~~~~~l~~p~~NKGtaFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~LFy~ll~~ 123 (585)
.+|..+|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||+|||+|||+++++
T Consensus 17 ~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ll~~ 96 (559)
T PTZ00317 17 ARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIETPINKYQFLRNIHDTNETLFYALLLK 96 (559)
T ss_pred CcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCCChHHHHHHHHHHhhcCchHHHHHHHh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEeeCcccccCCCCCCcccccchh
Q 007904 124 NVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVG 203 (585)
Q Consensus 124 ~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~iG 203 (585)
|+|||||||||||||+||++||++||+|||||+|++|+|+|+++|+|||.++|++||||||||||||||||++|||||||
T Consensus 97 ~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I~~G 176 (559)
T PTZ00317 97 YLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGSRILGLGDLGANGMGISIG 176 (559)
T ss_pred CHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEeccccccccCCccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCCCceeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchH
Q 007904 204 KLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA 283 (585)
Q Consensus 204 Kl~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~a 283 (585)
|++|||+||||||++|||||||||||||+||+||+|+||||+|++|++||+|+||||+||+++| |+++||||||+++||
T Consensus 177 Kl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~~~na 255 (559)
T PTZ00317 177 KLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDFSNNHC 255 (559)
T ss_pred HHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhC-CCeEEehhhcCCccH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeE
Q 007904 284 FELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI 363 (585)
Q Consensus 284 f~lL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i 363 (585)
|++|+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||++||
T Consensus 256 f~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~-~Gls~eeA~~~i 334 (559)
T PTZ00317 256 FDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAE-YGVTREEALKSF 334 (559)
T ss_pred HHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHhcCeE
Confidence 9999999999999999999999999999999999999999999999999999999999999999987 599999999999
Q ss_pred EEEcCCCcccCCCccCCchhchhhcccc--CC---CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEe
Q 007904 364 CLVDSKGLIVSSRKDSLQHFKKPWAHEH--EP---VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 438 (585)
Q Consensus 364 ~lvD~~GLi~~~r~~~l~~~k~~fa~~~--~~---~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFa 438 (585)
|+||++|||+++|.++|+++|++||++. ++ ..+|+|||+.+|||||||+|+++|+|||||||+|+++|+||||||
T Consensus 335 ~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFa 414 (559)
T PTZ00317 335 YLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFP 414 (559)
T ss_pred EEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 9999999999999766999999999973 33 569999999999999999999999999999999999999999999
Q ss_pred cCCCCCcCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHH
Q 007904 439 LSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALA 518 (585)
Q Consensus 439 LSNPt~~~E~tpeda~~wt~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA 518 (585)
|||||++|||||||||+||+|||||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++||++||
T Consensus 415 LSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~m~~aAA~aLA 494 (559)
T PTZ00317 415 LSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLNGKTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAAAASLA 494 (559)
T ss_pred CCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCcccCCeeeccCcCcceeeccchhhhhHhhcccCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCC--CCC-chhHHHHHHhCCcccC
Q 007904 519 KQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATR--LPR-PQNLVKCAESCMYTPV 580 (585)
Q Consensus 519 ~~v~~~~~~~~~l~P~i~~irevs~~VA~aVa~~A~~~GvA~~--~~~-~~dl~~~i~~~mw~P~ 580 (585)
+++++++++.+.|||++++||+||.+||.||+++|+++|+|+. .++ ++|+.+||+++||+|.
T Consensus 495 ~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aV~~~A~~~G~A~~~~~~~~~~~~~~~i~~~~w~P~ 559 (559)
T PTZ00317 495 TLVSEEDLREGKLYPPLEDIREISAHIAVDVIEEAQEMGIAKNKDLPDNRDELLALVKDRMWVPK 559 (559)
T ss_pred hhCCccccCCCeeeCCCccHhHHHHHHHHHHHHHHHHhCCCccCCCCCCHHHHHHHHHhcCcCCC
Confidence 9999999999999999999999999999999999999999985 343 3689999999999995
No 5
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=3.4e-120 Score=954.48 Aligned_cols=424 Identities=37% Similarity=0.556 Sum_probs=382.2
Q ss_pred cccHHHHHHHHHHHHhcCCC-chhHHHHHHHhHhhhhhhhhhhhcccccccCCcccchhhHHHHHHHhhhhcCCCccccc
Q 007904 79 VISQQLQEKKLMNSIRQYEV-PLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYIS 157 (585)
Q Consensus 79 v~t~e~Q~~r~~~~~~~~~~-~l~Ky~~L~~L~~~Ne~LFy~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls 157 (585)
++|+| |.+|++.++..+.+ .|++|.|| ++|+.+||.++-.|..|+|||+||||||++|++||+.|+.++
T Consensus 1 v~t~~-q~~~~~~~~~~~~~~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~----- 70 (432)
T COG0281 1 VETIE-QAERAYEQYEQLKTEALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAY----- 70 (432)
T ss_pred CccHH-HHHHHHHHHhhhhhhhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCcchhh-----
Confidence 57899 99999999999888 99999999 899999999999999999999999999999999998887775
Q ss_pred ccCcchHHHHHhcCCCCCeeEEEEeeCcccccCCCCC-CcccccchhhHHHHHHhcCCCCCceeeEEeccCCCchhcccC
Q 007904 158 LKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLG-CQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKD 236 (585)
Q Consensus 158 ~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG-~~GmgI~iGKl~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~D 236 (585)
.++.++++|+||||||||||||||| ..||||||||++|||+||||| +||||||+||+|+
T Consensus 71 ------------~yt~~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~~~~e----- 130 (432)
T COG0281 71 ------------SYTARGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVGTNNE----- 130 (432)
T ss_pred ------------hcCCCCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCCChHH-----
Confidence 3455666999999999999999999 579999999999999999999 9999999999877
Q ss_pred ccccccccCCCChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHHHHHH--HHcCCCeeeccCCCchHHHHHHHHHH
Q 007904 237 EFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLA--KYGTTHLVFNDDIQGTASVVLAGVVA 314 (585)
Q Consensus 237 P~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~lL~--ryr~~~~~FnDDiQGTaaV~lAgll~ 314 (585)
+++||++++++||. |++||++.|.||.+++ |||.+||||||||||||+|+||||||
T Consensus 131 -------------------i~~~Vkal~p~Fgg---inLedi~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~lA~lln 188 (432)
T COG0281 131 -------------------IIEFVKALEPTFGG---INLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLN 188 (432)
T ss_pred -------------------HHHHHHHhhhcCCC---cceeecccchhhHHHHHHhhcCCCCcccccccHHHHHHHHHHHH
Confidence 89999999999966 6666666677776555 55679999999999999999999999
Q ss_pred HHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCcc-CCchhchhhcc-ccC
Q 007904 315 ALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD-SLQHFKKPWAH-EHE 392 (585)
Q Consensus 315 A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~-~l~~~k~~fa~-~~~ 392 (585)
|+|++|++|+|+||||+|||+||+||+++|+++ |+. +++||+|||+|+|+++|.+ .++++|..+|. +..
T Consensus 189 alk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~-----g~~----~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~ 259 (432)
T COG0281 189 ALKLTGKKLKDQKIVINGAGAAGIAIADLLVAA-----GVK----EENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTG 259 (432)
T ss_pred HHHHhCCCccceEEEEeCCcHHHHHHHHHHHHh-----CCC----cccEEEEecCCcccCCCcccccchHHHHHHHhhhc
Confidence 999999999999999999999999999999997 443 2899999999999999975 36777777775 333
Q ss_pred CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccCcEEEecCCCCCcc
Q 007904 393 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPF 472 (585)
Q Consensus 393 ~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Grai~AsGSPf~pv 472 (585)
...+ .+++ .+||||||+|++ |+||+|+|++|+ ++|||||||||| +|++||||.+|++|++|+||||
T Consensus 260 ~~~~-~~~~--~~adv~iG~S~~-G~~t~e~V~~Ma---~~PiIfalaNP~--pEi~Pe~a~~~~~~aaivaTGr----- 325 (432)
T COG0281 260 ERTL-DLAL--AGADVLIGVSGV-GAFTEEMVKEMA---KHPIIFALANPT--PEITPEDAKEWGDGAAIVATGR----- 325 (432)
T ss_pred cccc-cccc--cCCCEEEEcCCC-CCcCHHHHHHhc---cCCEEeecCCCC--ccCCHHHHhhcCCCCEEEEeCC-----
Confidence 3342 3444 569999999998 899999999998 459999999999 9999999999999999999996
Q ss_pred eeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCCchhhHHHHHHHHHHH
Q 007904 473 EYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAK 552 (585)
Q Consensus 473 ~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~i~~irevs~~VA~aVa~~ 552 (585)
+++|||+||+|+|||||+|+|++||++|||+|++|||+|||+++.++.+ .+.|+|+++++|.+|. ||.||+++
T Consensus 326 -----sd~PnQvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~~~~~~~-~~~iiP~~~d~r~~~~-vA~AVa~a 398 (432)
T COG0281 326 -----SDYPNQVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIADLAREEVL-EEYIIPPPFDPRVISR-VAVAVAKA 398 (432)
T ss_pred -----CCCcccccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHhhccccCC-cCCCCCCCCchhHHHH-HHHHHHHH
Confidence 5667799999999999999999999999999999999999999987665 7899999999999998 99999999
Q ss_pred HHHcCCCCCCCCc-hhHHHHHHhCCcccCCCCC
Q 007904 553 AYELGVATRLPRP-QNLVKCAESCMYTPVYRNY 584 (585)
Q Consensus 553 A~~~GvA~~~~~~-~dl~~~i~~~mw~P~Y~~~ 584 (585)
|+++|+|+..+.+ +++.++++..+|.|.|.++
T Consensus 399 A~~~GvA~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (432)
T COG0281 399 AMEEGVARRPIDDEEAYEQALEARLWKPEYRMK 431 (432)
T ss_pred HHHcCCccCCCCCHHHHHHHHHHHhcCcccccC
Confidence 9999999865554 4699999999999999875
No 6
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=5.4e-111 Score=945.50 Aligned_cols=370 Identities=31% Similarity=0.485 Sum_probs=336.3
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEeeCcccccCCCCCCcc-cccchhh
Q 007904 126 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG-MGIPVGK 204 (585)
Q Consensus 126 ~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~iGK 204 (585)
.+.|.++|||||+++|++ |+++|+++| .|+.+.+.|+|||||||||||||+|++| |||||||
T Consensus 34 ~~dl~l~YtPgVa~~c~~---i~~~p~~~~--------------~~t~r~n~v~VvtdG~~vLGLGdiG~~a~~pvmeGK 96 (764)
T PRK12861 34 QRDLALAYTPGVASACEE---IAADPLNAF--------------RFTSRGNLVGVITNGTAVLGLGNIGALASKPVMEGK 96 (764)
T ss_pred hHHceeecCCchHHHHHH---HHhChHhhh--------------hhhccCcEEEEEecchhhccCCCcCcccccchHHHH
Confidence 456999999999999999 889999996 4445556799999999999999999996 9999999
Q ss_pred HHHHHHhcCCCCCceeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHH
Q 007904 205 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF 284 (585)
Q Consensus 205 l~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af 284 (585)
++|||+||||| + +|+|||| +|| |+|| |||++++++||. ||||||++||||
T Consensus 97 ~~L~~~~agid---~----~di~~~~----~dp---------------d~~v-~~v~a~~~~fg~---i~lED~~~p~~f 146 (764)
T PRK12861 97 AVLFKKFAGID---V----FDIEINE----TDP---------------DKLV-DIIAGLEPTFGG---INLEDIKAPECF 146 (764)
T ss_pred HHHHhhccCCC---c----cccccCC----CCH---------------HHHH-HHHHHHHhhcCC---ceeeeccCchHH
Confidence 99999999999 4 5555555 577 7888 999999999977 999999999999
Q ss_pred HHHHHHcC--CCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCe
Q 007904 285 ELLAKYGT--THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 362 (585)
Q Consensus 285 ~lL~ryr~--~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~ 362 (585)
+||+|||+ +||||||||||||+|+|||||||+|++|++|+|+||||+|||+||+|||++|+. .|++++ |
T Consensus 147 ~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~-----~G~~~~----~ 217 (764)
T PRK12861 147 TVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVD-----LGLPVE----N 217 (764)
T ss_pred HHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHH-----cCCChh----h
Confidence 99999998 699999999999999999999999999999999999999999999999999976 499864 9
Q ss_pred EEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007904 363 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 442 (585)
Q Consensus 363 i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNP 442 (585)
||+|||+|||+++|.+.|+++|++||++. +..+|+|+|++ ||||||+|+ +|+||+|+|++|+ +||||||||||
T Consensus 218 i~~~D~~Gli~~~r~~~l~~~k~~~a~~~-~~~~L~eai~~--advliG~S~-~g~ft~e~v~~Ma---~~PIIFaLsNP 290 (764)
T PRK12861 218 IWVTDIEGVVYRGRTTLMDPDKERFAQET-DARTLAEVIGG--ADVFLGLSA-GGVLKAEMLKAMA---ARPLILALANP 290 (764)
T ss_pred EEEEcCCCeeeCCCcccCCHHHHHHHhhc-CCCCHHHHHhc--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEECCCC
Confidence 99999999999999766999999999975 45799999998 899999998 8999999999998 59999999999
Q ss_pred CCcCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccC
Q 007904 443 TSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVT 522 (585)
Q Consensus 443 t~~~E~tpeda~~wt~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~ 522 (585)
| |||+||||++ |+|+|||||| |+++|||+||+|+|||||+|++++||++|||+|+++||++||++++
T Consensus 291 t--pE~~pe~a~~-~~g~aivaTG----------rs~~pnQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~alA~~~~ 357 (764)
T PRK12861 291 T--PEIFPELAHA-TRDDVVIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTITREMEIAAVHAIAGLAE 357 (764)
T ss_pred C--ccCCHHHHHh-cCCCEEEEeC----------CcCCCCccceeeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhCC
Confidence 9 8999999987 9999999997 8999999999999999999999999999999999999999999999
Q ss_pred cccc--------------CCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHh
Q 007904 523 EENF--------------EKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAES 574 (585)
Q Consensus 523 ~~~~--------------~~~~l~P~i~~irevs~~VA~aVa~~A~~~GvA~~~~~~~dl~~~i~~ 574 (585)
++++ ....|+|+..+ ++||..||.||+++|+++|+|+. +. +|+.+|+++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~iiP~~~~-~~v~~~VA~aVa~~a~~~GvA~~-~~-~~~~~~~~~ 420 (764)
T PRK12861 358 EEQNDVVAAAYGAYDVSFGPQYLIPKPFD-PRLIVRIAPAVAKAAMEGGVATR-PI-ADLDAYVEQ 420 (764)
T ss_pred cccCHHHHHhhccccccCCCCCCCCCCCC-hhHHHHHHHHHHHHHHHhCCCCC-Cc-hhHHHHHHH
Confidence 8753 34455596666 79999999999999999999985 32 566666554
No 7
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=4.5e-110 Score=942.81 Aligned_cols=369 Identities=29% Similarity=0.459 Sum_probs=338.6
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEeeCcccccCCCCCCcc-cccchhh
Q 007904 126 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG-MGIPVGK 204 (585)
Q Consensus 126 ~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~iGK 204 (585)
.+.|.++|||||+++|++ |+++|+++| .|+.+.+.++|||||||||||||+|++| |||||||
T Consensus 38 ~~dl~~~ytpgv~~~~~~---i~~~~~~~~--------------~~t~~~n~v~vvtdg~~vLGlGd~G~~~~~pv~egK 100 (763)
T PRK12862 38 QRDLALAYSPGVAAPCLE---IAADPANAA--------------RYTSRGNLVAVVSNGTAVLGLGNIGPLASKPVMEGK 100 (763)
T ss_pred HHHceeeeCCchHHHHHH---HHhChHhhh--------------hcccCCcEEEEEechhhhccccccCcccccchHHHH
Confidence 445999999999999999 779998888 5667778999999999999999999996 9999999
Q ss_pred HHHHHHhcCCCCCceeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCCc-eeeeeecCCCchH
Q 007904 205 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEK-VLIQFEDFANHNA 283 (585)
Q Consensus 205 l~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~-~lIq~EDf~~~~a 283 (585)
++|||+||||| ++|||+ ||+ || ||||++|+.+| |+ ..||||||++|||
T Consensus 101 ~~l~~~~~gi~---~~~i~~----~~~----d~-------------------d~~v~~v~~~~-p~f~~i~~ED~~~~~~ 149 (763)
T PRK12862 101 AVLFKKFAGID---VFDIEL----DES----DP-------------------DKLVEIVAALE-PTFGGINLEDIKAPEC 149 (763)
T ss_pred HHHHHhhcCCC---cccccc----CCC----CH-------------------HHHHHHHHHhC-CCcceeeeecccCchH
Confidence 99999999999 555555 455 55 88889999888 87 7899999999999
Q ss_pred HHHHHHHcCC--CeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcC
Q 007904 284 FELLAKYGTT--HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 361 (585)
Q Consensus 284 f~lL~ryr~~--~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~ 361 (585)
|+||+|||++ ||||||||||||+|+|||||||+|++|++|+|+||||+|||+||+|||+||+. .|+++ +
T Consensus 150 f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~~----~ 220 (763)
T PRK12862 150 FYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVS-----LGVKR----E 220 (763)
T ss_pred HHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHH-----cCCCc----c
Confidence 9999999986 99999999999999999999999999999999999999999999999999987 39874 7
Q ss_pred eEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007904 362 KICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 362 ~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN 441 (585)
||||||++|||+++|.+.|+++|++||++. +..+|+|+|+. ||||||+|+ +|+||+|||++|+ +|||||||||
T Consensus 221 ~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~-~~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsN 293 (763)
T PRK12862 221 NIWVTDIKGVVYEGRTELMDPWKARYAQKT-DARTLAEVIEG--ADVFLGLSA-AGVLKPEMVKKMA---PRPLIFALAN 293 (763)
T ss_pred cEEEEcCCCeeeCCCCccccHHHHHHhhhc-ccCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEeCCC
Confidence 999999999999999766999999999985 55799999998 999999999 8999999999998 9999999999
Q ss_pred CCCcCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHccc
Q 007904 442 PTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQV 521 (585)
Q Consensus 442 Pt~~~E~tpeda~~wt~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v 521 (585)
|| |||+|||||+||+| |||||| |+++|||+||+|+|||||+|++++||++|||+|+++||++||+++
T Consensus 294 P~--~E~~p~~a~~~~~~-~i~atG----------rs~~p~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~ 360 (763)
T PRK12862 294 PT--PEILPEEARAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAIAELA 360 (763)
T ss_pred Cc--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeeccchhhhHHhcCCeeCCHHHHHHHHHHHHhcc
Confidence 99 89999999999999 999998 799999999999999999999999999999999999999999999
Q ss_pred Cccc--------------cCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHh
Q 007904 522 TEEN--------------FEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAES 574 (585)
Q Consensus 522 ~~~~--------------~~~~~l~P~i~~irevs~~VA~aVa~~A~~~GvA~~~~~~~dl~~~i~~ 574 (585)
++++ +..++|||+..+ ++||..||.||+++|+++|+|+. + .+|+.+|+++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~i~P~~~~-~~v~~~va~aVa~~a~~~g~a~~-~-~~~~~~~~~~ 424 (763)
T PRK12862 361 REEQSDVVAAAYGGEDLSFGPDYLIPKPFD-PRLILKIAPAVAQAAMDSGVATR-P-IEDMDAYREQ 424 (763)
T ss_pred cccCCHHHHHhhccccccCCCCcccCCCCC-hhHHHHHHHHHHHHHHHhCCCCC-C-chhHHHHHHH
Confidence 9873 455669997666 89999999999999999999985 3 3467777654
No 8
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=5.6e-109 Score=929.75 Aligned_cols=359 Identities=31% Similarity=0.502 Sum_probs=334.5
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEeeCcccccCCCCCCc-ccccchhh
Q 007904 126 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQ-GMGIPVGK 204 (585)
Q Consensus 126 ~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~-GmgI~iGK 204 (585)
.+.|+++|||||+++|++ |+++|+++| ++++|| +.++|||||||||||||+|++ |||||+||
T Consensus 30 ~~dl~~~Ytpgv~~~c~~---i~~~~~~~~-~~t~~~-------------n~v~vvtdg~~vLGlGd~G~~a~~pv~egK 92 (752)
T PRK07232 30 QRDLSLAYSPGVAAPCLE---IAKDPADAY-KYTARG-------------NLVAVISNGTAVLGLGNIGALASKPVMEGK 92 (752)
T ss_pred hhhcceecCCchHHHHHH---HHhChhhcc-ccccCC-------------cEEEEEccchhhccccccccccCccHHHHH
Confidence 456999999999999996 789999999 666655 469999999999999999999 89999999
Q ss_pred HHHHHHhcCCCCCceeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCCce-eeeeecCCCchH
Q 007904 205 LALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKV-LIQFEDFANHNA 283 (585)
Q Consensus 205 l~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~-lIq~EDf~~~~a 283 (585)
++|||+||||| ++||| |||++ +||||++|+..| |.. +||||||++|||
T Consensus 93 ~~l~~~~~gid---~~~i~----~~~~d-----------------------~de~v~~v~~~~-p~~g~i~~ED~~~p~~ 141 (752)
T PRK07232 93 GVLFKKFAGID---VFDIE----VDEED-----------------------PDKFIEAVAALE-PTFGGINLEDIKAPEC 141 (752)
T ss_pred HHHHHhhcCCC---ccccc----cCCCC-----------------------HHHHHHHHHHhC-CCccEEeeeecCCchH
Confidence 99999999999 55555 45552 799999999999 775 999999999999
Q ss_pred HHHHHHHcCC--CeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcC
Q 007904 284 FELLAKYGTT--HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 361 (585)
Q Consensus 284 f~lL~ryr~~--~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~ 361 (585)
|++|+|||++ ||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+|||+||+. .|++ ++
T Consensus 142 f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~----~~ 212 (752)
T PRK07232 142 FYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVA-----LGAK----KE 212 (752)
T ss_pred HHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHH-----cCCC----cc
Confidence 9999999985 89999999999999999999999999999999999999999999999999986 3987 68
Q ss_pred eEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007904 362 KICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 362 ~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN 441 (585)
+||+||++|||+++|.++|+++|++||++ .+..+|+|+|+. ||||||+|+ +|+||+|+|++|+ +|||||||||
T Consensus 213 ~i~~~D~~G~i~~~r~~~~~~~k~~~a~~-~~~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsN 285 (752)
T PRK07232 213 NIIVCDSKGVIYKGRTEGMDEWKAAYAVD-TDARTLAEAIEG--ADVFLGLSA-AGVLTPEMVKSMA---DNPIIFALAN 285 (752)
T ss_pred cEEEEcCCCeecCCCcccccHHHHHHhcc-CCCCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEecCC
Confidence 99999999999999966699999999997 455799999998 999999999 8999999999998 7999999999
Q ss_pred CCCcCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHccc
Q 007904 442 PTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQV 521 (585)
Q Consensus 442 Pt~~~E~tpeda~~wt~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v 521 (585)
|| |||+||||++||+| +||||| |+++|||+||+|+|||||+|++++||++|||+|+++||++||+++
T Consensus 286 P~--~E~~p~~a~~~~~~-~i~atG----------rs~~pnQ~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~ 352 (752)
T PRK07232 286 PD--PEITPEEAKAVRPD-AIIATG----------RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKLAAVRAIAELA 352 (752)
T ss_pred CC--ccCCHHHHHHhcCC-EEEEEC----------CcCCCCcccceeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhc
Confidence 99 89999999999999 999998 899999999999999999999999999999999999999999999
Q ss_pred Ccc--------------ccCCCcccCCCCCchhhHHHHHHHHHHHHHHcCCCCCC
Q 007904 522 TEE--------------NFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRL 562 (585)
Q Consensus 522 ~~~--------------~~~~~~l~P~i~~irevs~~VA~aVa~~A~~~GvA~~~ 562 (585)
+++ ++...+|+|+.++ ++|+..||.||+++|+++|+|+..
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~iip~~~~-~~~~~~va~av~~~a~~~g~a~~~ 406 (752)
T PRK07232 353 REEVSDEVAAAYGGQKLSFGPEYIIPKPFD-PRLIVKIAPAVAKAAMDSGVATRP 406 (752)
T ss_pred ccccchhhhhhhccccccCCCCccCCCCCC-hhHHHHHHHHHHHHHHhhCcccCC
Confidence 876 6888999999999 679999999999999999999853
No 9
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=2.8e-99 Score=769.11 Aligned_cols=277 Identities=60% Similarity=0.974 Sum_probs=270.0
Q ss_pred CCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC
Q 007904 301 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 380 (585)
Q Consensus 301 iQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l 380 (585)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||+++||++|++|||+++|.+ |
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~-~G~~~eeA~~~i~~vD~~Gll~~~r~~-l 78 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVR-EGLSEEEARKKIWLVDSKGLLTKDRKD-L 78 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHH-cCCChhhccCeEEEEcCCCeEeCCCCc-c
Confidence 89999999999999999999999999999999999999999999999998 599999999999999999999999965 9
Q ss_pred chhchhhccccC--CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhcccc
Q 007904 381 QHFKKPWAHEHE--PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK 458 (585)
Q Consensus 381 ~~~k~~fa~~~~--~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~ 458 (585)
+++|++||++.. +..+|+|+|+.+|||||||+|+++|+||+|+||+|+++|+|||||||||||+++||||||||+||+
T Consensus 79 ~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~ 158 (279)
T cd05312 79 TPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTD 158 (279)
T ss_pred hHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhc
Confidence 999999999765 568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCCc
Q 007904 459 GRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNI 538 (585)
Q Consensus 459 Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~i~~i 538 (585)
|||||||||||+||+|+||+++||||||+|+|||||||+++++|++|||+||++||++||++++++++..++|||+++++
T Consensus 159 G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~~l~~~~l~P~~~~~ 238 (279)
T cd05312 159 GRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEELARGRLYPPLSNI 238 (279)
T ss_pred CCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCccccCCCeeeCCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHhCCccc
Q 007904 539 RKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTP 579 (585)
Q Consensus 539 revs~~VA~aVa~~A~~~GvA~~~~~~~dl~~~i~~~mw~P 579 (585)
|+||..||.||+++|+++|+|+..++++|+++||+++||+|
T Consensus 239 r~vs~~VA~aVa~~A~~~gla~~~~~~~~~~~~i~~~~w~P 279 (279)
T cd05312 239 REISAQIAVAVAKYAYEEGLATRYPPPEDLEEYVKSQMWEP 279 (279)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCccCC
Confidence 99999999999999999999987676789999999999998
No 10
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=9.4e-96 Score=735.20 Aligned_cols=252 Identities=54% Similarity=0.898 Sum_probs=229.7
Q ss_pred CCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC
Q 007904 301 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 380 (585)
Q Consensus 301 iQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l 380 (585)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|+++ |+|++||++||||+|++|||+++|. +|
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~-G~~~~eA~~~i~lvD~~Gll~~~r~-~l 78 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVRE-GLSEEEARKRIWLVDSKGLLTDDRE-DL 78 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCT-TS-HHHHHTTEEEEETTEEEBTTTS-SH
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHh-cCCHHHHhccEEEEeccceEeccCc-cC
Confidence 799999999999999999999999999999999999999999999999986 9999999999999999999999994 59
Q ss_pred chhchhhccccCCC---CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccc
Q 007904 381 QHFKKPWAHEHEPV---NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 457 (585)
Q Consensus 381 ~~~k~~fa~~~~~~---~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt 457 (585)
+++|++||++..+. .+|+|+|+++|||||||+|+++|+|||||||+|+++|||||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t 158 (255)
T PF03949_consen 79 NPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWT 158 (255)
T ss_dssp SHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTT
T ss_pred ChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhC
Confidence 99999999987665 499999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCC
Q 007904 458 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 537 (585)
Q Consensus 458 ~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~i~~ 537 (585)
+|+|||||||||+||+|+||+++||||||+|||||||||++++||++|||+||++||++||++++++++..++|||++++
T Consensus 159 ~g~ai~AtGSpf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 238 (255)
T PF03949_consen 159 DGRAIFATGSPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAEALADLVSEEELAPGRLYPPLFD 238 (255)
T ss_dssp TSEEEEEESS----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHHHHHHTSSHHHHHTTBSS-SGGG
T ss_pred CceEEEecCCccCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHHHHHHhCCcccCCCCcccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHH
Q 007904 538 IRKISANIAANVAAKAY 554 (585)
Q Consensus 538 irevs~~VA~aVa~~A~ 554 (585)
+|+||.+||.+|+++|+
T Consensus 239 ir~vs~~VA~aVa~~Ai 255 (255)
T PF03949_consen 239 IREVSARVAAAVAKQAI 255 (255)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhC
Confidence 99999999999999996
No 11
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=5.8e-93 Score=714.24 Aligned_cols=251 Identities=51% Similarity=0.775 Sum_probs=245.1
Q ss_pred CCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC
Q 007904 301 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 380 (585)
Q Consensus 301 iQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l 380 (585)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||++|||++|++|||+++|.+ |
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~-~Gls~e~A~~~i~~vD~~Gll~~~r~~-l 78 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVK-EGISKEEACKRIWXVDRKGLLVKNRKE-T 78 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHh-cCCCHHHHhccEEEECCCCeEeCCCCc-c
Confidence 79999999999999999999999999999999999999999999999998 499999999999999999999999965 8
Q ss_pred chhchh---hccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccc
Q 007904 381 QHFKKP---WAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 457 (585)
Q Consensus 381 ~~~k~~---fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt 457 (585)
.++|++ |+++..+..+|+|+|+.+|||||||+|+++|+||||+|++|+++|+|||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t 158 (254)
T cd00762 79 CPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTAT 158 (254)
T ss_pred CHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhc
Confidence 999999 88887777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCC
Q 007904 458 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 537 (585)
Q Consensus 458 ~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~i~~ 537 (585)
+|||||||||||+||+|+|+++.|+||||+|||||||||+++++|++|||+||++||++||++++++++..+.|||++++
T Consensus 159 ~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~~~l~~~~i~P~~~~ 238 (254)
T cd00762 159 EGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEESLKPGRLYPPLFD 238 (254)
T ss_pred CCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCChhcCCCCceeCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHH
Q 007904 538 IRKISANIAANVAAKA 553 (585)
Q Consensus 538 irevs~~VA~aVa~~A 553 (585)
||+||.+||.+|+++|
T Consensus 239 ir~vs~~VA~aVa~~a 254 (254)
T cd00762 239 IQEVSLNIAVAVAKYA 254 (254)
T ss_pred hhhHHHHHHHHHHHhC
Confidence 9999999999999875
No 12
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=2.6e-83 Score=615.80 Aligned_cols=182 Identities=65% Similarity=1.207 Sum_probs=164.3
Q ss_pred HhhhhhhhhhhhcccccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEeeCccccc
Q 007904 110 EERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILG 189 (585)
Q Consensus 110 ~~~Ne~LFy~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyls~~d~g~i~~~l~nwp~~~v~viVVTDG~rILG 189 (585)
|++||+|||+++.+|++|+||||||||||+||++||++|++|+|+|+|++|+|+|+++|+|||.++|++|||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccchhhHHHHHHhcCCCCCceeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCC
Q 007904 190 LGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGE 269 (585)
Q Consensus 190 LGDlG~~GmgI~iGKl~LY~a~gGI~P~~~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp 269 (585)
|||+|++|||||+||++|||+||||||++|||||||+|||||+||+||+|+|+||+|++|++|++||||||+||+++|||
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeecCCCchHHHHHHHHc
Q 007904 270 KVLIQFEDFANHNAFELLAKYG 291 (585)
Q Consensus 270 ~~lIq~EDf~~~~af~lL~ryr 291 (585)
+++||||||+++|||++|+|||
T Consensus 161 ~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEEE-S--CCHHHHHHHHHT
T ss_pred CeEEEEecCCChhHHHHHHhcC
Confidence 9999999999999999999997
No 13
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=100.00 E-value=3.7e-58 Score=455.70 Aligned_cols=223 Identities=38% Similarity=0.518 Sum_probs=207.6
Q ss_pred CCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC
Q 007904 301 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 380 (585)
Q Consensus 301 iQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l 380 (585)
+||||+|++||+++|+|..|++++++||||+|||+||.|||++|.. .|++ +++||++|++||++.+|.+.|
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~-----~G~~----~~~i~ivdr~gl~~~~r~~~L 71 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLA-----AGAK----PENIVVVDSKGVIYEGREDDL 71 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHH-----cCcC----cceEEEEeCCCccccccchhh
Confidence 7999999999999999999999999999999999999999999975 3886 679999999999999987668
Q ss_pred chhchhhcccc--CCC-CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccc
Q 007904 381 QHFKKPWAHEH--EPV-NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 457 (585)
Q Consensus 381 ~~~k~~fa~~~--~~~-~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt 457 (585)
.++|++|+++. .+. .+|.|++++ ||+|||+|+ +|+||+++++.|+ ++||||+||||+ +||++++|++|
T Consensus 72 ~~~~~~la~~~~~~~~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~---~~~ivf~lsnP~--~e~~~~~A~~~- 142 (226)
T cd05311 72 NPDKNEIAKETNPEKTGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA---KDPIVFALANPV--PEIWPEEAKEA- 142 (226)
T ss_pred hHHHHHHHHHhccCcccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC---CCCEEEEeCCCC--CcCCHHHHHHc-
Confidence 99999998763 222 378899986 999999999 8899999999997 899999999999 89999999999
Q ss_pred cCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCcccCCCCC
Q 007904 458 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 537 (585)
Q Consensus 458 ~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~i~~ 537 (585)
|..||+|| +++.|+|+||+|||||||||++++++++|||+||++||++||+++++++++.+.|||++++
T Consensus 143 -ga~i~a~G----------~~~~~~Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~~~~~~~~~P~~~~ 211 (226)
T cd05311 143 -GADIVATG----------RSDFPNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEVLGEEYIIPTPFD 211 (226)
T ss_pred -CCcEEEeC----------CCCCccccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCccccCCCcccCCCCc
Confidence 55599998 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHH
Q 007904 538 IRKISANIAANVAAKA 553 (585)
Q Consensus 538 irevs~~VA~aVa~~A 553 (585)
|+||..||.+|+++|
T Consensus 212 -~~~~~~va~~v~~~a 226 (226)
T cd05311 212 -PRVVPRVATAVAKAA 226 (226)
T ss_pred -hhHHHHHHHHHHHhC
Confidence 999999999999875
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.89 E-value=2.3e-08 Score=85.31 Aligned_cols=86 Identities=37% Similarity=0.492 Sum_probs=76.2
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
+||.++++++..+.+..+.+++..+++|+|+|.+|.+++..+.+. | .++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~-----~------~~~v~v~~r-------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADE-----G------GKKVVLCDR-------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHc-----C------CCEEEEEcC--------------
Confidence 699999999999999999999999999999999999999999764 3 267999988
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 440 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLS 440 (585)
|+||++++.++.|+++ .|+..++.|+||.++
T Consensus 56 ------------------------di~i~~~~~~~~~~~~---~~~~~~~~~~v~~~a 86 (86)
T cd05191 56 ------------------------DILVTATPAGVPVLEE---ATAKINEGAVVIDLA 86 (86)
T ss_pred ------------------------CEEEEcCCCCCCchHH---HHHhcCCCCEEEecC
Confidence 9999999999999888 555557999999875
No 15
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.62 E-value=0.0063 Score=66.94 Aligned_cols=157 Identities=18% Similarity=0.253 Sum_probs=102.9
Q ss_pred ChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHHHH---------------------HHHHc-------CCCeeec-
Q 007904 248 TGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFEL---------------------LAKYG-------TTHLVFN- 298 (585)
Q Consensus 248 ~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~l---------------------L~ryr-------~~~~~Fn- 298 (585)
+-++|+..+++.+ ..+.|+.+| |.+..-...+ ..||+ -.+|+||
T Consensus 107 ~~~ey~~~~~~~l----~~~~p~iii---DdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~~v 179 (425)
T PRK05476 107 TLEEYWECIERAL----DGHGPNMIL---DDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAINV 179 (425)
T ss_pred CHHHHHHHHHHHh----cCCCCCEEE---ecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEEec
Confidence 5577877777665 345566555 4444333322 13443 2699998
Q ss_pred ---------cCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 299 ---------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 299 ---------DDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
|...||+--++-|+.. .++..+.+.+++|+|+|..|.++|..+... |. +++++|.+
T Consensus 180 n~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~Gk~VlViG~G~IG~~vA~~lr~~-----Ga-------~ViV~d~d 244 (425)
T PRK05476 180 NDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDVGKGCAQRLRGL-----GA-------RVIVTEVD 244 (425)
T ss_pred CCcccCccccccHHHHhhhHHHHHH---hccCCCCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEEcCC
Confidence 6678888776666553 346778999999999999999999888652 63 58888864
Q ss_pred CcccCCCccCCchhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 370 GLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 370 GLi~~~r~~~l~~~k~~fa~-~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
- .| ...+. ..-...++.++++. .|++|-+++..++|+.+.++.|. +.-|++-.+.+.
T Consensus 245 p----~r--------a~~A~~~G~~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK---~GailiNvG~~d 302 (425)
T PRK05476 245 P----IC--------ALQAAMDGFRVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMK---DGAILANIGHFD 302 (425)
T ss_pred c----hh--------hHHHHhcCCEecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCC---CCCEEEEcCCCC
Confidence 1 11 11111 11113468888875 99999988877788888888885 334665555444
No 16
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.28 E-value=0.0011 Score=72.22 Aligned_cols=121 Identities=25% Similarity=0.369 Sum_probs=81.8
Q ss_pred CchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 302 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 302 QGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
.+.-+++.+++--|.+..| .+.+.+++|+|+|..|..++..+.. .|+ .+++++|+.. .+ ..
T Consensus 158 ~~~vSv~~~Av~la~~~~~-~l~~~~VlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~rs~----~r---a~ 218 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFG-SLKGKKALLIGAGEMGELVAKHLLR-----KGV------GKILIANRTY----ER---AE 218 (417)
T ss_pred CCCcCHHHHHHHHHHHHhC-CccCCEEEEECChHHHHHHHHHHHH-----CCC------CEEEEEeCCH----HH---HH
Confidence 5566777777766666655 4888999999999999999888865 265 5799888741 11 11
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCc-EEEecCCCC
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKP-LILALSNPT 443 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~-g~Ft~evi~~Ma~~~erP-IIFaLSNPt 443 (585)
.....+....-...++.+++.. .|++|-+++.+ ..+++++++.+.....+| +|+-+++|.
T Consensus 219 ~la~~~g~~~i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Pr 280 (417)
T TIGR01035 219 DLAKELGGEAVKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPR 280 (417)
T ss_pred HHHHHcCCeEeeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 1111111111112367788875 99999987544 478999999875433366 889999997
No 17
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.13 E-value=0.0059 Score=61.33 Aligned_cols=130 Identities=21% Similarity=0.235 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchh
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 383 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 383 (585)
||-=+..++-.+++..+.+|+..||+|.|-|..|.++|++|.+. |. +-+.+.|++|-++.. + ++..
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~-----G~------~vV~vsD~~g~i~~~-G--ld~~ 67 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEE-----GG------KVLAVSDPDGYIYDP-G--ITTE 67 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEEcCCCcEECC-C--CCHH
Confidence 44456667788889999999999999999999999999999763 54 678899999988876 3 4332
Q ss_pred -chhhccccCCCCC-------HHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCcCCCCHHHHh
Q 007904 384 -KKPWAHEHEPVNN-------LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAY 454 (585)
Q Consensus 384 -k~~fa~~~~~~~~-------L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt~~~E~tpeda~ 454 (585)
...+.++...... =.+.+..++.||||=++. .+..|++..+.+ .-++|.--+| |++ + .+++.+
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~-~~~i~~~~a~~l----~a~~V~e~AN~p~t-~--~a~~~L 139 (217)
T cd05211 68 ELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCAL-GNVIDLENAKKL----KAKVVAEGANNPTT-D--EALRIL 139 (217)
T ss_pred HHHHHHHhhCCccccCcccccCcccceeccccEEeeccc-cCccChhhHhhc----CccEEEeCCCCCCC-H--HHHHHH
Confidence 2222221111100 013444568999997776 569999999988 5789998888 874 2 456666
Q ss_pred c
Q 007904 455 T 455 (585)
Q Consensus 455 ~ 455 (585)
+
T Consensus 140 ~ 140 (217)
T cd05211 140 H 140 (217)
T ss_pred H
Confidence 5
No 18
>PLN02477 glutamate dehydrogenase
Probab=97.08 E-value=0.015 Score=63.76 Aligned_cols=186 Identities=22% Similarity=0.233 Sum_probs=128.4
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHH--HHHHHHcC----CCeee----------ccCCCchHHHHHH
Q 007904 247 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF--ELLAKYGT----THLVF----------NDDIQGTASVVLA 310 (585)
Q Consensus 247 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af--~lL~ryr~----~~~~F----------nDDiQGTaaV~lA 310 (585)
.+..|-..|...|+.++.+--||..=|-=+|++..-.- -+.++|+. .-.|+ .+--.-||-=+..
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~ 191 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVVF 191 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHHH
Confidence 45677888999999999999998655666777653221 25677753 11111 2233458877888
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEE-EEcCCCcccCCCccCCchhch-hhc
Q 007904 311 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK-PWA 388 (585)
Q Consensus 311 gll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~-lvD~~GLi~~~r~~~l~~~k~-~fa 388 (585)
++-.+++..|.+|+..||+|.|-|..|.+.|++|.+. |. +|+ +.|++|-|++.. .|+.... .+.
T Consensus 192 ~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~-----Ga-------kVVaVsD~~G~iy~~~--GLD~~~L~~~k 257 (410)
T PLN02477 192 ATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEK-----GG-------KIVAVSDITGAVKNEN--GLDIPALRKHV 257 (410)
T ss_pred HHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHc-----CC-------EEEEEECCCCeEECCC--CCCHHHHHHHH
Confidence 8888999999999999999999999999999988653 63 566 899999999875 3543221 111
Q ss_pred ccc------CC--CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCcCCCCHHHHhc
Q 007904 389 HEH------EP--VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 455 (585)
Q Consensus 389 ~~~------~~--~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt~~~E~tpeda~~ 455 (585)
+.. +. .-+-.+.+. .+.||||=+.- ++.+|++.+..+ .-.||.--+| |+ -+| +++.++
T Consensus 258 ~~~g~l~~~~~a~~i~~~e~l~-~~~DvliP~Al-~~~I~~~na~~i----~ak~I~egAN~p~-t~e--a~~~L~ 324 (410)
T PLN02477 258 AEGGGLKGFPGGDPIDPDDILV-EPCDVLIPAAL-GGVINKENAADV----KAKFIVEAANHPT-DPE--ADEILR 324 (410)
T ss_pred HhcCchhccccceEecCcccee-ccccEEeeccc-cccCCHhHHHHc----CCcEEEeCCCCCC-CHH--HHHHHH
Confidence 110 00 012233343 48999996654 679999999986 7889999999 66 344 445554
No 19
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.01 E-value=0.004 Score=65.18 Aligned_cols=137 Identities=23% Similarity=0.360 Sum_probs=85.8
Q ss_pred chHHHHHHHHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhc
Q 007904 281 HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 360 (585)
Q Consensus 281 ~~af~lL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~ 360 (585)
.+|+++=++.|.+.-+. .+-.+|+.+++-.|....|. +.+.+|+|+|+|..|..++..+... |.
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~~-----g~------ 202 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAAK-----GV------ 202 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHHc-----CC------
Confidence 46777767776654433 34456666666555555554 8899999999999999888888652 43
Q ss_pred CeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC--CCcEEEe
Q 007904 361 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN--EKPLILA 438 (585)
Q Consensus 361 ~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~--erPIIFa 438 (585)
++|+++|+. ..| .......|-.......++.+++.. +|++|-+++.+.. +++++.+.+.. ..-+|+=
T Consensus 203 ~~V~v~~r~----~~r---a~~la~~~g~~~~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viD 271 (311)
T cd05213 203 AEITIANRT----YER---AEELAKELGGNAVPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRSGKPRLIVD 271 (311)
T ss_pred CEEEEEeCC----HHH---HHHHHHHcCCeEEeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEE
Confidence 679999873 111 111111221111112357777765 8999999887754 66666654322 2347778
Q ss_pred cCCCCC
Q 007904 439 LSNPTS 444 (585)
Q Consensus 439 LSNPt~ 444 (585)
||||-.
T Consensus 272 lavPrd 277 (311)
T cd05213 272 LAVPRD 277 (311)
T ss_pred eCCCCC
Confidence 999863
No 20
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.97 E-value=0.032 Score=61.22 Aligned_cols=127 Identities=20% Similarity=0.240 Sum_probs=87.7
Q ss_pred CCeeec----------cCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCe
Q 007904 293 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 362 (585)
Q Consensus 293 ~~~~Fn----------DDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~ 362 (585)
.+|+|+ |.-.||+--++-+++ |.++..+...+++|+|.|..|.++|..+... |. +
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~-----Ga-------~ 220 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAGKTVVVAGYGWCGKGIAMRARGM-----GA-------R 220 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCcCEEEEECCCHHHHHHHHHHhhC-----cC-------E
Confidence 788886 667899977776655 4567789999999999999999999987642 63 5
Q ss_pred EEEEcCCCcccCCCccCCchhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007904 363 ICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 363 i~lvD~~GLi~~~r~~~l~~~k~~fa~-~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN 441 (585)
++++|.+- .| ...|+ +.-...++.|+++. .|++|-+++..++++.+.+..|. +.-||.-.+.
T Consensus 221 ViV~d~dp----~r--------~~~A~~~G~~v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK---~GailiN~G~ 283 (406)
T TIGR00936 221 VIVTEVDP----IR--------ALEAAMDGFRVMTMEEAAKI--GDIFITATGNKDVIRGEHFENMK---DGAIVANIGH 283 (406)
T ss_pred EEEEeCCh----hh--------HHHHHhcCCEeCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEECC
Confidence 88887641 11 11111 11112357788865 89999888777788888888775 5557776666
Q ss_pred CCCcCCCCHHHH
Q 007904 442 PTSQSECTAEEA 453 (585)
Q Consensus 442 Pt~~~E~tpeda 453 (585)
.. .|+.-++.
T Consensus 284 ~~--~eId~~aL 293 (406)
T TIGR00936 284 FD--VEIDVKAL 293 (406)
T ss_pred CC--ceeCHHHH
Confidence 64 55555444
No 21
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.97 E-value=0.038 Score=61.28 Aligned_cols=189 Identities=17% Similarity=0.165 Sum_probs=130.6
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHH--HHHHHHcCC---C-ee------e----ccCCCchHHHHHH
Q 007904 247 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF--ELLAKYGTT---H-LV------F----NDDIQGTASVVLA 310 (585)
Q Consensus 247 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af--~lL~ryr~~---~-~~------F----nDDiQGTaaV~lA 310 (585)
.+..|-..|...|+.++.+.+||..=|--+|++..-.- -+.+.|+.- . .+ - .+--..||-=+..
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~ 217 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVY 217 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHH
Confidence 45568888999999999999999888888888743222 267787631 1 11 1 1233457777788
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEE-cCCCcccCCCccCCchh-----c
Q 007904 311 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHF-----K 384 (585)
Q Consensus 311 gll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lv-D~~GLi~~~r~~~l~~~-----k 384 (585)
++..+++..|..|++.||+|.|-|..|...|++|.+ .|. +++-+ |++|-|+... .|+.. +
T Consensus 218 ~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~-----~Ga-------kVVavsDs~G~iyn~~--GLD~~~L~~~k 283 (445)
T PRK09414 218 FAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQ-----LGA-------KVVTCSDSSGYVYDEE--GIDLEKLKEIK 283 (445)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCceEECCC--CCCHHHHHHHH
Confidence 888999999999999999999999999999999964 363 45555 9999999875 34332 1
Q ss_pred h-------hhccc-cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCcCCCCHHHHhc
Q 007904 385 K-------PWAHE-HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 455 (585)
Q Consensus 385 ~-------~fa~~-~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt~~~E~tpeda~~ 455 (585)
. .|... ....-+- +.+-.++.||||=++. .+..|++-...+-. +.-.||.=-+| |+ -+| +++++.
T Consensus 284 ~~~~~~l~~~~~~~~~~~i~~-~~i~~~d~DVliPaAl-~n~It~~~a~~i~~-~~akiIvEgAN~p~-t~~--A~~~L~ 357 (445)
T PRK09414 284 EVRRGRISEYAEEFGAEYLEG-GSPWSVPCDIALPCAT-QNELDEEDAKTLIA-NGVKAVAEGANMPS-TPE--AIEVFL 357 (445)
T ss_pred HhcCCchhhhhhhcCCeecCC-ccccccCCcEEEecCC-cCcCCHHHHHHHHH-cCCeEEEcCCCCCC-CHH--HHHHHH
Confidence 1 11110 0001122 2344568999997665 77999999998843 45689999998 77 244 445554
No 22
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.95 E-value=0.0032 Score=68.70 Aligned_cols=120 Identities=27% Similarity=0.415 Sum_probs=77.9
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
+..+|+.+++--|.+..| ++.+.+++|+|+|..|..++..+.. .|. ++++++|+. ..| ...
T Consensus 161 ~~~Sv~~~Av~~a~~~~~-~~~~~~vlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~r~----~~r---a~~ 221 (423)
T PRK00045 161 GAVSVASAAVELAKQIFG-DLSGKKVLVIGAGEMGELVAKHLAE-----KGV------RKITVANRT----LER---AEE 221 (423)
T ss_pred CCcCHHHHHHHHHHHhhC-CccCCEEEEECchHHHHHHHHHHHH-----CCC------CeEEEEeCC----HHH---HHH
Confidence 355666666544444444 6888999999999999999888764 264 679988874 121 111
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCC--CCcEEEecCCCC
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFN--EKPLILALSNPT 443 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~-g~Ft~evi~~Ma~~~--erPIIFaLSNPt 443 (585)
....|........++.+++.. .|++|.+++.+ ..+++++++.+.+.. ...+|+=||+|-
T Consensus 222 la~~~g~~~~~~~~~~~~l~~--aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Pr 283 (423)
T PRK00045 222 LAEEFGGEAIPLDELPEALAE--ADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPR 283 (423)
T ss_pred HHHHcCCcEeeHHHHHHHhcc--CCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCC
Confidence 111121011112356677764 89999988655 478999999875322 335888999997
No 23
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.93 E-value=0.014 Score=64.06 Aligned_cols=129 Identities=18% Similarity=0.233 Sum_probs=93.8
Q ss_pred CCeeec----------cCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCe
Q 007904 293 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 362 (585)
Q Consensus 293 ~~~~Fn----------DDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~ 362 (585)
.+|+|+ |...||+--++-+++. .++..+...+++|+|+|..|.++|..+... |. +
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~r---~t~~~l~GktVvViG~G~IG~~va~~ak~~-----Ga-------~ 227 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLIDGIKR---ATDVMIAGKVAVVAGYGDVGKGCAQSLRGQ-----GA-------R 227 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHHHHHH---hcCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------E
Confidence 688875 6678999988877765 667789999999999999999999887643 63 4
Q ss_pred EEEEcCCCcccCCCccCCchhchhhcccc-CCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007904 363 ICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 363 i~lvD~~GLi~~~r~~~l~~~k~~fa~~~-~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN 441 (585)
++++|.+ +.+..+|+.. -...++.|+++. .|++|-+++..++|+++.++.|. ..-+|.-.+.
T Consensus 228 ViV~d~d------------~~R~~~A~~~G~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk---~GgilvnvG~ 290 (413)
T cd00401 228 VIVTEVD------------PICALQAAMEGYEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMK---DGAIVCNIGH 290 (413)
T ss_pred EEEEECC------------hhhHHHHHhcCCEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEeCC
Confidence 7777763 1222333321 112246788865 89999999888888888888885 5567767777
Q ss_pred CCCcCCCCHHHHhc
Q 007904 442 PTSQSECTAEEAYT 455 (585)
Q Consensus 442 Pt~~~E~tpeda~~ 455 (585)
+. .|+.+.+...
T Consensus 291 ~~--~eId~~~L~~ 302 (413)
T cd00401 291 FD--VEIDVKGLKE 302 (413)
T ss_pred CC--CccCHHHHHh
Confidence 63 7888887654
No 24
>PLN02494 adenosylhomocysteinase
Probab=96.83 E-value=0.013 Score=65.23 Aligned_cols=130 Identities=16% Similarity=0.216 Sum_probs=94.1
Q ss_pred CCeeec----------cCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCe
Q 007904 293 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 362 (585)
Q Consensus 293 ~~~~Fn----------DDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~ 362 (585)
.+|++| |-..||+--++-|++ |.++..+...+++|+|.|..|.++|..+.. .|+ +
T Consensus 215 ~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~---r~t~i~LaGKtVvViGyG~IGr~vA~~aka-----~Ga-------~ 279 (477)
T PLN02494 215 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVICGYGDVGKGCAAAMKA-----AGA-------R 279 (477)
T ss_pred CCCEEEEcChhhhhhhhccccccccHHHHHH---HhcCCccCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 677776 446899888888777 567888999999999999999999999853 264 5
Q ss_pred EEEEcCCCcccCCCccCCchhchhhccc-cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007904 363 ICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 363 i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN 441 (585)
++++|.+.. +...|.. .-...++.|+++. .|++|=+++..++++++.++.|. +.-|+.-.+.
T Consensus 280 VIV~e~dp~------------r~~eA~~~G~~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK---~GAiLiNvGr 342 (477)
T PLN02494 280 VIVTEIDPI------------CALQALMEGYQVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMK---NNAIVCNIGH 342 (477)
T ss_pred EEEEeCCch------------hhHHHHhcCCeeccHHHHHhh--CCEEEECCCCccchHHHHHhcCC---CCCEEEEcCC
Confidence 888876421 1111111 0112358888875 89999877777788999999986 6678888887
Q ss_pred CCCcCCCCHHHHhcc
Q 007904 442 PTSQSECTAEEAYTW 456 (585)
Q Consensus 442 Pt~~~E~tpeda~~w 456 (585)
+. .|+.-+...++
T Consensus 343 ~~--~eID~~aL~~~ 355 (477)
T PLN02494 343 FD--NEIDMLGLETY 355 (477)
T ss_pred CC--CccCHHHHhhc
Confidence 65 77777766554
No 25
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.83 E-value=0.073 Score=59.11 Aligned_cols=127 Identities=18% Similarity=0.153 Sum_probs=96.7
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchH--HHHHHHHcC---CC-eee----------ccCCCchHHHHHH
Q 007904 247 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA--FELLAKYGT---TH-LVF----------NDDIQGTASVVLA 310 (585)
Q Consensus 247 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~a--f~lL~ryr~---~~-~~F----------nDDiQGTaaV~lA 310 (585)
.+-.|...|.-.|+..+.+.+||+.-|--+|++..-. --+.+.|+. .. -+| .+--..||-=+.-
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 4566788899999999999999999999999876332 226777753 11 233 2333558887888
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchh
Q 007904 311 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP 386 (585)
Q Consensus 311 gll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~ 386 (585)
++-.+++..|.+|+++||+|.|.|..|.-.|+.|.+. |. +=+-+-|++|-|++.. .++..+..
T Consensus 214 ~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~-----GA------kVVaVSD~~G~iy~~~--Gld~~~l~ 276 (444)
T PRK14031 214 FLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLEL-----GG------KVVTMSDSDGYIYDPD--GIDREKLD 276 (444)
T ss_pred HHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC--CCCHHHHH
Confidence 8889999999999999999999999999999999763 64 3455699999988754 46654443
No 26
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.81 E-value=0.009 Score=57.87 Aligned_cols=91 Identities=22% Similarity=0.343 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhh
Q 007904 309 LAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 387 (585)
Q Consensus 309 lAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~f 387 (585)
..+.+-.++.....|.+.+++++|+|. .|..+|+.|.. .|. ++++++++
T Consensus 28 ~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~-----~g~-------~V~v~~r~------------------ 77 (168)
T cd01080 28 PAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLN-----RNA-------TVTVCHSK------------------ 77 (168)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhh-----CCC-------EEEEEECC------------------
Confidence 333444555556789999999999997 59889888865 252 58888864
Q ss_pred ccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 388 AHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 388 a~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
...|.+.++. .|++|.+++.+..|+++.++ +.-+|+=++.|-
T Consensus 78 ------~~~l~~~l~~--aDiVIsat~~~~ii~~~~~~------~~~viIDla~pr 119 (168)
T cd01080 78 ------TKNLKEHTKQ--ADIVIVAVGKPGLVKGDMVK------PGAVVIDVGINR 119 (168)
T ss_pred ------chhHHHHHhh--CCEEEEcCCCCceecHHHcc------CCeEEEEccCCC
Confidence 0357788887 99999999988899999775 346788888876
No 27
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.79 E-value=0.081 Score=58.77 Aligned_cols=189 Identities=15% Similarity=0.131 Sum_probs=130.6
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHHH---HHHHHcC----CCeeecc---CC-------CchHHHHH
Q 007904 247 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYGT----THLVFND---DI-------QGTASVVL 309 (585)
Q Consensus 247 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~---lL~ryr~----~~~~FnD---Di-------QGTaaV~l 309 (585)
.+..|...|.-.||..+.+-.||+.=|-=.|++. ++.. +++.|+. ...++.- .. ..||-=+.
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt-~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~ 212 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGV-GGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGAL 212 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCC-CHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHH
Confidence 4556788899999999998889988788888874 3333 5677764 2223211 11 23888888
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhc-
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA- 388 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa- 388 (585)
.++-.+++..|.+|++.||+|-|-|..|...|+.|.+. |. +=+-+-|++|-|++.. .++..+..+.
T Consensus 213 ~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~-----Ga------kvVavSD~~G~i~d~~--Gld~~~l~~l~ 279 (445)
T PRK14030 213 YFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATEL-----GA------KVVTISGPDGYIYDPD--GISGEKIDYML 279 (445)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC--CCCHHHHHHHH
Confidence 88889999999999999999999999999999999653 74 5577789999998864 3554332110
Q ss_pred --------------cccCCCC--CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCcCCCCHH
Q 007904 389 --------------HEHEPVN--NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAE 451 (585)
Q Consensus 389 --------------~~~~~~~--~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt~~~E~tpe 451 (585)
..-+... +-.+ +-.++.||||=+.. .+.+|++.++.+.+ +.-.||.=-+| |++ +| ++
T Consensus 280 ~~k~~~~~~~~~~~~~~~ga~~i~~~~-~~~~~cDVliPcAl-~n~I~~~na~~l~~-~~ak~V~EgAN~p~t-~e--A~ 353 (445)
T PRK14030 280 ELRASGNDIVAPYAEKFPGSTFFAGKK-PWEQKVDIALPCAT-QNELNGEDADKLIK-NGVLCVAEVSNMGCT-AE--AI 353 (445)
T ss_pred HHHHhcCccHHHHHhcCCCCEEcCCcc-ceeccccEEeeccc-cccCCHHHHHHHHH-cCCeEEEeCCCCCCC-HH--HH
Confidence 0100100 1122 23468999997766 57999999999843 34678888888 653 33 44
Q ss_pred HHhc
Q 007904 452 EAYT 455 (585)
Q Consensus 452 da~~ 455 (585)
+++.
T Consensus 354 ~iL~ 357 (445)
T PRK14030 354 DKFI 357 (445)
T ss_pred HHHH
Confidence 5554
No 28
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.68 E-value=0.012 Score=61.46 Aligned_cols=138 Identities=19% Similarity=0.255 Sum_probs=90.0
Q ss_pred CchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 302 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 302 QGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
..+-+++=.++.-+++..+..|.+.+++|+|+|..|..+|+.+... |. +++++|++. . .+.
T Consensus 128 ~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~-----G~-------~V~v~~R~~----~---~~~ 188 (287)
T TIGR02853 128 YNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSAL-----GA-------RVFVGARSS----A---DLA 188 (287)
T ss_pred EccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHC-----CC-------EEEEEeCCH----H---HHH
Confidence 4455666666677778888899999999999999999999999652 63 588888741 1 111
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccCcE
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRA 461 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Gra 461 (585)
..+ .+....-...+|.+.++. .|++|=+. +.+.++++.++.|. +.-+|+=+|..- -++..+.|-+ -.-++
T Consensus 189 ~~~-~~g~~~~~~~~l~~~l~~--aDiVint~-P~~ii~~~~l~~~k---~~aliIDlas~P--g~tdf~~Ak~-~G~~a 258 (287)
T TIGR02853 189 RIT-EMGLIPFPLNKLEEKVAE--IDIVINTI-PALVLTADVLSKLP---KHAVIIDLASKP--GGTDFEYAKK-RGIKA 258 (287)
T ss_pred HHH-HCCCeeecHHHHHHHhcc--CCEEEECC-ChHHhCHHHHhcCC---CCeEEEEeCcCC--CCCCHHHHHH-CCCEE
Confidence 110 000011112357777775 89999654 44578999998885 556888776422 3555644433 34477
Q ss_pred EEecCCC
Q 007904 462 IFASGSP 468 (585)
Q Consensus 462 i~AsGSP 468 (585)
+.+-|=|
T Consensus 259 ~~~~glP 265 (287)
T TIGR02853 259 LLAPGLP 265 (287)
T ss_pred EEeCCCC
Confidence 7788755
No 29
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.58 E-value=0.14 Score=56.91 Aligned_cols=180 Identities=17% Similarity=0.194 Sum_probs=126.6
Q ss_pred CChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHHH---HHHHHcC---CC-eeecc----------CCCchHHHHH
Q 007904 247 ATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYGT---TH-LVFND----------DIQGTASVVL 309 (585)
Q Consensus 247 ~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~---lL~ryr~---~~-~~FnD----------DiQGTaaV~l 309 (585)
.+..|-..|...||..+.+..||+.-|-=.|++. ++.. +.+.|+. .. .|+-. --..||-=++
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt-~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~ 221 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLV 221 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCC-CHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHH
Confidence 4556678899999999999999999999999984 3333 5566652 22 22211 1223787778
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEE-EEcCCCcccCCCccCCchhch---
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK--- 385 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~-lvD~~GLi~~~r~~~l~~~k~--- 385 (585)
.++-.+++..|.+|++.||+|-|.|..|...|+.|.+. |. +++ +.|++|-|++.. .++..+.
T Consensus 222 ~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~-----Ga-------kVVavSD~~G~iy~~~--Gld~~~l~~l 287 (454)
T PTZ00079 222 YFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQL-----GA-------KVLTMSDSDGYIHEPN--GFTKEKLAYL 287 (454)
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEEcCCCcEECCC--CCCHHHHHHH
Confidence 88889999999999999999999999999999998763 63 455 999999999875 4544332
Q ss_pred ------------hhccccCCCC--CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCC
Q 007904 386 ------------PWAHEHEPVN--NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTS 444 (585)
Q Consensus 386 ------------~fa~~~~~~~--~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt~ 444 (585)
.|+...+... +- +.+-.++.|||+=+.. .+.+|++-.+.+-+ +.-.+|.=-+| |++
T Consensus 288 ~~~k~~~~g~i~~~~~~~~~a~~~~~-~~~~~~~cDI~iPcA~-~n~I~~~~a~~l~~-~~ak~V~EgAN~p~t 358 (454)
T PTZ00079 288 MDLKNVKRGRLKEYAKHSSTAKYVPG-KKPWEVPCDIAFPCAT-QNEINLEDAKLLIK-NGCKLVAEGANMPTT 358 (454)
T ss_pred HHHHhhcCCcHHhhhhccCCcEEeCC-cCcccCCccEEEeccc-cccCCHHHHHHHHH-cCCeEEEecCCCCCC
Confidence 1211000000 11 1222368999998777 56999999998843 34568888888 773
No 30
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.58 E-value=0.0019 Score=59.62 Aligned_cols=102 Identities=25% Similarity=0.432 Sum_probs=66.3
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc---cCCCCCH
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNL 397 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~---~~~~~~L 397 (585)
.++++.|++|+|||.+|-+++..|.. .|. ++|++++|. .+| .......|... .-+..++
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~-----~g~------~~i~i~nRt----~~r---a~~l~~~~~~~~~~~~~~~~~ 69 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAA-----LGA------KEITIVNRT----PER---AEALAEEFGGVNIEAIPLEDL 69 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHH-----TTS------SEEEEEESS----HHH---HHHHHHHHTGCSEEEEEGGGH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHH-----cCC------CEEEEEECC----HHH---HHHHHHHcCccccceeeHHHH
Confidence 37999999999999999888887765 375 789999873 222 22222233110 1123456
Q ss_pred HHHhcccCCcEEEeccCCCC-CCCHHHHHHHHcCCCCcEEEecCCCCC
Q 007904 398 LDAVKVIKPTILIGSSGVGR-TFTKEVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 398 ~e~v~~vkptvLIG~S~~~g-~Ft~evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
.+.+.. .|++|-+++.+. .++++.++..... ..+||=||+|-.
T Consensus 70 ~~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~~--~~~v~Dla~Pr~ 113 (135)
T PF01488_consen 70 EEALQE--ADIVINATPSGMPIITEEMLKKASKK--LRLVIDLAVPRD 113 (135)
T ss_dssp CHHHHT--ESEEEE-SSTTSTSSTHHHHTTTCHH--CSEEEES-SS-S
T ss_pred HHHHhh--CCeEEEecCCCCcccCHHHHHHHHhh--hhceeccccCCC
Confidence 666765 999999887663 7888888743211 249999999974
No 31
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.50 E-value=0.014 Score=58.95 Aligned_cols=123 Identities=24% Similarity=0.302 Sum_probs=89.3
Q ss_pred CchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 302 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 302 QGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
.-||-=+..++-.+++..+..|++.||+|.|-|..|-++|++|.+. |. +=+.+.|++|-+++..+ |+
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~G--ld 74 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPDG--LD 74 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCCC--CC
Confidence 4567777788888888889999999999999999999999998763 64 34559999999988653 43
Q ss_pred hhch-hhccccCC------C--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 007904 382 HFKK-PWAHEHEP------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 443 (585)
Q Consensus 382 ~~k~-~fa~~~~~------~--~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt 443 (585)
.... .+.+.... . -+-.+ +-..+.||||=++ .++..|++.+..+ .-++|.--+| |+
T Consensus 75 ~~~l~~~~~~~g~l~~~~~~~~~~~~~-i~~~~~Dvlip~a-~~~~i~~~~~~~l----~a~~I~egAN~~~ 140 (227)
T cd01076 75 VPALLAYKKEHGSVLGFPGAERITNEE-LLELDCDILIPAA-LENQITADNADRI----KAKIIVEAANGPT 140 (227)
T ss_pred HHHHHHHHHhcCCcccCCCceecCCcc-ceeecccEEEecC-ccCccCHHHHhhc----eeeEEEeCCCCCC
Confidence 3221 11111000 0 12223 4445899999777 5779999999988 5889999999 65
No 32
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.47 E-value=0.023 Score=60.92 Aligned_cols=113 Identities=21% Similarity=0.341 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
|+++...++--|.+..|..|++.+++|.|| |+.|--++++|... .|. ++++++++. ..| +..
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~----~gv------~~lilv~R~----~~r---l~~ 196 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAK----TGV------AELLLVARQ----QER---LQE 196 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhh----CCC------CEEEEEcCC----HHH---HHH
Confidence 678888888889999999999999999999 89999999888642 243 679988874 112 323
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCC--CCHHHHHHHHcCCCCc-EEEecCCCCC
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT--FTKEVIEAMASFNEKP-LILALSNPTS 444 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~--Ft~evi~~Ma~~~erP-IIFaLSNPt~ 444 (585)
.+.++.. ....+|.+++.. +|++|-+++.+.. ++++.+ ++| +|+=++.|-.
T Consensus 197 La~el~~--~~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l-------~~~~~viDiAvPRD 250 (340)
T PRK14982 197 LQAELGG--GKILSLEEALPE--ADIVVWVASMPKGVEIDPETL-------KKPCLMIDGGYPKN 250 (340)
T ss_pred HHHHhcc--ccHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHh-------CCCeEEEEecCCCC
Confidence 2333321 123467788876 9999988776432 677655 344 5566899874
No 33
>PLN00203 glutamyl-tRNA reductase
Probab=96.11 E-value=0.019 Score=64.72 Aligned_cols=201 Identities=19% Similarity=0.281 Sum_probs=112.6
Q ss_pred chHHHHHHHHHHHHHHhCC-CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGG-TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~-~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
|--+|+-+++=-|.++.|. +|.+.+|+|+|||..|..++..|.. .|. ++|+++++. ..+ ..
T Consensus 243 ~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~-----~G~------~~V~V~nRs----~er---a~ 304 (519)
T PLN00203 243 GAVSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVS-----KGC------TKMVVVNRS----EER---VA 304 (519)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHh-----CCC------CeEEEEeCC----HHH---HH
Confidence 3334454555556666664 5899999999999999888877753 364 679999874 122 22
Q ss_pred hhchhhcc---ccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCC---CCc-EEEecCCCCCcCCCCHHHH
Q 007904 382 HFKKPWAH---EHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFN---EKP-LILALSNPTSQSECTAEEA 453 (585)
Q Consensus 382 ~~k~~fa~---~~~~~~~L~e~v~~vkptvLIG~S~~~-g~Ft~evi~~Ma~~~---erP-IIFaLSNPt~~~E~tpeda 453 (585)
.....|-. ......++.+++.. .|++|.+++.+ .+|++++++.|-+.. .+| +|+=||.|-.--.+-.
T Consensus 305 ~La~~~~g~~i~~~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~v~--- 379 (519)
T PLN00203 305 ALREEFPDVEIIYKPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGACVS--- 379 (519)
T ss_pred HHHHHhCCCceEeecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCccccc---
Confidence 22222210 01123467788875 99999886544 489999999984321 244 5667999973111110
Q ss_pred hccccCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHH-cccC--ccccCCCc
Q 007904 454 YTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALA-KQVT--EENFEKGL 530 (585)
Q Consensus 454 ~~wt~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA-~~v~--~~~~~~~~ 530 (585)
...|+++|===-|-.+...-..-..+-.. .|+.+- +.+. .+.+....
T Consensus 380 -----------------------------~l~~v~lydiDdL~~i~~~n~~~R~~~~~-~Ae~II~ee~~~F~~w~~~~~ 429 (519)
T PLN00203 380 -----------------------------ELESARVYNVDDLKEVVAANKEDRLRKAM-EAQTIIREESKNFEAWRDSLE 429 (519)
T ss_pred -----------------------------cCCCCeEEEeccHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcc
Confidence 00111111111122222221111111111 122221 1111 11344567
Q ss_pred ccCCCCCchhhHHHHHHHHHHHHHHc
Q 007904 531 IYPPFSNIRKISANIAANVAAKAYEL 556 (585)
Q Consensus 531 l~P~i~~irevs~~VA~aVa~~A~~~ 556 (585)
+.|-+.++|+-...|..+=.+.+.+.
T Consensus 430 ~~p~I~~lr~~~~~i~~~Eler~~~k 455 (519)
T PLN00203 430 TVPTIKKLRSYAERIRAAELEKCLSK 455 (519)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999998888888765
No 34
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.11 E-value=0.05 Score=56.91 Aligned_cols=128 Identities=22% Similarity=0.296 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchh
Q 007904 307 VVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP 386 (585)
Q Consensus 307 V~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~ 386 (585)
++-+++..+++..+..+...|++|+|+|.+|..++..+.. .| -+++++|++- . +..
T Consensus 134 ~aegav~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~-----~G-------a~V~v~~r~~----~--------~~~ 189 (296)
T PRK08306 134 TAEGAIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKA-----LG-------ANVTVGARKS----A--------HLA 189 (296)
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHH-----CC-------CEEEEEECCH----H--------HHH
Confidence 3334566677778888999999999999999999888864 25 2689898851 1 111
Q ss_pred hcccc----CCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccC-cE
Q 007904 387 WAHEH----EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG-RA 461 (585)
Q Consensus 387 fa~~~----~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~G-ra 461 (585)
+++.. -...+|.+.++. .|++|-++ +...++++.++.|. +.-+|+=++... -.|..+.|.+ .| ++
T Consensus 190 ~~~~~G~~~~~~~~l~~~l~~--aDiVI~t~-p~~~i~~~~l~~~~---~g~vIIDla~~p--ggtd~~~a~~--~Gv~~ 259 (296)
T PRK08306 190 RITEMGLSPFHLSELAEEVGK--IDIIFNTI-PALVLTKEVLSKMP---PEALIIDLASKP--GGTDFEYAEK--RGIKA 259 (296)
T ss_pred HHHHcCCeeecHHHHHHHhCC--CCEEEECC-ChhhhhHHHHHcCC---CCcEEEEEccCC--CCcCeeehhh--CCeEE
Confidence 11110 112457777775 99999865 35678999998886 566777565433 2344433322 34 34
Q ss_pred EEecCCC
Q 007904 462 IFASGSP 468 (585)
Q Consensus 462 i~AsGSP 468 (585)
+.++|=|
T Consensus 260 ~~~~~lp 266 (296)
T PRK08306 260 LLAPGLP 266 (296)
T ss_pred EEECCCC
Confidence 4456643
No 35
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.05 E-value=0.032 Score=61.30 Aligned_cols=213 Identities=21% Similarity=0.315 Sum_probs=128.1
Q ss_pred chHHHHHHHHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhc
Q 007904 281 HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 360 (585)
Q Consensus 281 ~~af~lL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~ 360 (585)
..||..=.|.|.+.-. -.|--+|.-|++=-|-++.|. |++.+++|+|||..|..+|.-|... |+
T Consensus 139 qkAi~~gKrvRseT~I----~~~~VSi~saAv~lA~~~~~~-L~~~~vlvIGAGem~~lva~~L~~~-----g~------ 202 (414)
T COG0373 139 QKAISVGKRVRSETGI----GKGAVSISSAAVELAKRIFGS-LKDKKVLVIGAGEMGELVAKHLAEK-----GV------ 202 (414)
T ss_pred HHHHHHHHHhhcccCC----CCCccchHHHHHHHHHHHhcc-cccCeEEEEcccHHHHHHHHHHHhC-----CC------
Confidence 4566666677753210 123334445555555555554 9999999999999999999888763 76
Q ss_pred CeEEEEcCCCcccCCCccCCchhchhhcccc----CCCCCHHHHhcccCCcEEEeccC-CCCCCCHHHHHHHHcCCCCcE
Q 007904 361 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLLDAVKVIKPTILIGSSG-VGRTFTKEVIEAMASFNEKPL 435 (585)
Q Consensus 361 ~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~----~~~~~L~e~v~~vkptvLIG~S~-~~g~Ft~evi~~Ma~~~erPI 435 (585)
++|+++.+. ..|. +.+|+.- -....|.+.+.. .||+|-.++ +.-+++.+.++.-.+..++=+
T Consensus 203 ~~i~IaNRT----~erA-------~~La~~~~~~~~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~~r~~~l 269 (414)
T COG0373 203 KKITIANRT----LERA-------EELAKKLGAEAVALEELLEALAE--ADVVISSTSAPHPIITREMVERALKIRKRLL 269 (414)
T ss_pred CEEEEEcCC----HHHH-------HHHHHHhCCeeecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHhcccCeE
Confidence 789988772 2221 2233321 122456677766 899886654 445889988887665444459
Q ss_pred EEecCCCCCcCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHH
Q 007904 436 ILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASE 515 (585)
Q Consensus 436 IFaLSNPt~~~E~tpeda~~wt~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~ 515 (585)
||=|+||-.- ++ ..+.-||+++|-==-|-.+.-.-..-..+.. ++|+
T Consensus 270 ivDiavPRdi---------e~-----------------------~v~~l~~v~l~~iDDL~~iv~~n~~~R~~~~-~~ae 316 (414)
T COG0373 270 IVDIAVPRDV---------EP-----------------------EVGELPNVFLYTIDDLEEIVEENLEARKEEA-AKAE 316 (414)
T ss_pred EEEecCCCCC---------Cc-----------------------cccCcCCeEEEehhhHHHHHHHhHHHHHHHH-HHHH
Confidence 9999999831 11 1133455666544444444333222222222 2222
Q ss_pred HH-----HcccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHcC
Q 007904 516 AL-----AKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELG 557 (585)
Q Consensus 516 aL-----A~~v~~~~~~~~~l~P~i~~irevs~~VA~aVa~~A~~~G 557 (585)
++ +.+. +.+..-.+-|.+.++|+-+..|...-.+.|.+.-
T Consensus 317 ~iIeee~~~~~--~~l~~~~~~~~i~~lr~~a~~v~~~ele~a~~~l 361 (414)
T COG0373 317 AIIEEELAEFM--EWLKKLEVVPTIRALREQAEDVREEELEKALKKL 361 (414)
T ss_pred HHHHHHHHHHH--HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22 1111 1345567889999999888888888888887544
No 36
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.05 E-value=0.13 Score=57.49 Aligned_cols=123 Identities=18% Similarity=0.184 Sum_probs=85.3
Q ss_pred CCeeeccCCCchHHHH-------HHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEE
Q 007904 293 THLVFNDDIQGTASVV-------LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 365 (585)
Q Consensus 293 ~~~~FnDDiQGTaaV~-------lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~l 365 (585)
.+|++|-+---|-.+. ++.+=+.+|.++..|...+++|+|.|..|.++|..+... |. ++++
T Consensus 215 ~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~-----Ga-------~ViV 282 (476)
T PTZ00075 215 LFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGF-----GA-------RVVV 282 (476)
T ss_pred CceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEE
Confidence 6899986655544433 444455567788999999999999999999999998642 63 4777
Q ss_pred EcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 366 VDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 366 vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+|++-. +. +.... ..-...++.|+++. .|++|-+.+..++|+++.++.|. +.-|+.-.+...
T Consensus 283 ~e~dp~----~a--~~A~~-----~G~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MK---pGAiLINvGr~d 344 (476)
T PTZ00075 283 TEIDPI----CA--LQAAM-----EGYQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMK---NNAIVGNIGHFD 344 (476)
T ss_pred EeCCch----hH--HHHHh-----cCceeccHHHHHhc--CCEEEECCCcccccCHHHHhccC---CCcEEEEcCCCc
Confidence 766411 10 11000 11112468888876 99999988888899999999996 555666666553
No 37
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.00 E-value=0.12 Score=54.17 Aligned_cols=109 Identities=19% Similarity=0.302 Sum_probs=80.8
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+.+-+|-.|++..++..+.+++.+++|++|+|- +|-.||.+|.. .| | .+.+++++
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~-----~g-----a--tVtv~~~~------------ 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLN-----AN-----A--TVTICHSR------------ 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-----CC-----C--EEEEEeCC------------
Confidence 446777799999999999999999999999997 99999999865 25 2 68888762
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEec-CCCC---CcCCCCHHHHhc
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL-SNPT---SQSECTAEEAYT 455 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaL-SNPt---~~~E~tpeda~~ 455 (585)
..+|.+.++. .|++|-+.+.++.|+.++++ +.-+|+=. .||. -.-++.+|++.+
T Consensus 193 ------------t~~L~~~~~~--aDIvI~AtG~~~~v~~~~lk------~gavViDvg~n~~~~~~~GDvd~~~~~~ 250 (283)
T PRK14192 193 ------------TQNLPELVKQ--ADIIVGAVGKPELIKKDWIK------QGAVVVDAGFHPRDGGGVGDIELQGIEE 250 (283)
T ss_pred ------------chhHHHHhcc--CCEEEEccCCCCcCCHHHcC------CCCEEEEEEEeecCCCCcccccHHHhhc
Confidence 1236666664 99999999989999998875 45566544 3663 112455555543
No 38
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.96 E-value=0.043 Score=57.66 Aligned_cols=97 Identities=18% Similarity=0.336 Sum_probs=77.3
Q ss_pred CchHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC
Q 007904 302 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 380 (585)
Q Consensus 302 QGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l 380 (585)
.+-.-+|-+|++.-++..+.+|++.+++++|+|. .|..+|.+|.. .| ..+++++++.
T Consensus 135 ~~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~-----~g-------atVtv~~s~t---------- 192 (286)
T PRK14175 135 QTFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQ-----KN-------ASVTILHSRS---------- 192 (286)
T ss_pred CCCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHH-----CC-------CeEEEEeCCc----------
Confidence 3456788999999999999999999999999988 99999999965 25 4577787641
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007904 381 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 442 (585)
Q Consensus 381 ~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNP 442 (585)
.+|.+.+++ +|++|...+.++.|++++++ +.-+|+=++.|
T Consensus 193 --------------~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk------~gavVIDvGi~ 232 (286)
T PRK14175 193 --------------KDMASYLKD--ADVIVSAVGKPGLVTKDVVK------EGAVIIDVGNT 232 (286)
T ss_pred --------------hhHHHHHhh--CCEEEECCCCCcccCHHHcC------CCcEEEEcCCC
Confidence 257788887 99999999999999998775 34455555543
No 39
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.93 E-value=0.055 Score=49.70 Aligned_cols=108 Identities=22% Similarity=0.325 Sum_probs=67.7
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 389 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~ 389 (585)
.|+.+|++..+..+++.+++|+|+|..|..++..+.+. |. .+++++|++ ..+ .......+..
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~-----g~------~~v~v~~r~----~~~---~~~~~~~~~~ 65 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAEL-----GA------AKIVIVNRT----LEK---AKALAERFGE 65 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHC-----CC------CEEEEEcCC----HHH---HHHHHHHHhh
Confidence 58899999988889999999999998888888777542 32 578888874 111 2221222211
Q ss_pred c--cCCCCCHHHHhcccCCcEEEeccCCCC------CCCHHHHHHHHcCCCCcEEEecC-CCC
Q 007904 390 E--HEPVNNLLDAVKVIKPTILIGSSGVGR------TFTKEVIEAMASFNEKPLILALS-NPT 443 (585)
Q Consensus 390 ~--~~~~~~L~e~v~~vkptvLIG~S~~~g------~Ft~evi~~Ma~~~erPIIFaLS-NPt 443 (585)
. .....++.++++. +|++|-+...+- .|.+.. ..+..+|+=+| +|.
T Consensus 66 ~~~~~~~~~~~~~~~~--~Dvvi~~~~~~~~~~~~~~~~~~~------~~~~~~v~D~~~~~~ 120 (155)
T cd01065 66 LGIAIAYLDLEELLAE--ADLIINTTPVGMKPGDELPLPPSL------LKPGGVVYDVVYNPL 120 (155)
T ss_pred cccceeecchhhcccc--CCEEEeCcCCCCCCCCCCCCCHHH------cCCCCEEEEcCcCCC
Confidence 0 0123456676655 999997765432 133222 23667888775 444
No 40
>PLN00106 malate dehydrogenase
Probab=95.92 E-value=0.046 Score=58.15 Aligned_cols=118 Identities=25% Similarity=0.333 Sum_probs=81.1
Q ss_pred HHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhc
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 388 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa 388 (585)
|.-|.|+|..|..-. .||+|+|| |..|.-+|..|.. .|+ ...+.|+|.+- ..+-.-+|.+... +.
T Consensus 4 ~~~~~~~~~~~~~~~-~KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~el~L~Di~~--~~g~a~Dl~~~~~-~~ 69 (323)
T PLN00106 4 ASSLRACRAKGGAPG-FKVAVLGAAGGIGQPLSLLMKM-----NPL-----VSELHLYDIAN--TPGVAADVSHINT-PA 69 (323)
T ss_pred hhhhhccccccCCCC-CEEEEECCCCHHHHHHHHHHHh-----CCC-----CCEEEEEecCC--CCeeEchhhhCCc-Cc
Confidence 445788898887665 69999999 9999999987764 254 35799999865 1111111322111 11
Q ss_pred ccc--CCCCCHHHHhcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 389 HEH--EPVNNLLDAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 389 ~~~--~~~~~L~e~v~~vkptvLIG~S~~~g~--------------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+-. ....++.+++++ .|++|=+.+.+.. ..+++++.+.+++.+.||+.-|||.
T Consensus 70 ~i~~~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 70 QVRGFLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred eEEEEeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 111 133467888888 8888866665421 3467888999999999999999999
No 41
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.88 E-value=0.094 Score=51.83 Aligned_cols=123 Identities=16% Similarity=0.205 Sum_probs=82.5
Q ss_pred chHHHHHHHHHHHHHHh--CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC
Q 007904 303 GTASVVLAGVVAALKLI--GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 380 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~--g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l 380 (585)
.||-=+..++-.+++.. +.+|++.+|+|.|.|..|..+|+.|.+. | -+++++|++. +.+
T Consensus 4 aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~-----G-------~~Vvv~D~~~-------~~~ 64 (200)
T cd01075 4 PTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEE-----G-------AKLIVADINE-------EAV 64 (200)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEcCCH-------HHH
Confidence 35555666777777775 8899999999999999999999988763 6 3688888651 113
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCcCCCCHHHHhc
Q 007904 381 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 455 (585)
Q Consensus 381 ~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt~~~E~tpeda~~ 455 (585)
..++..|.. ... +..+... .+.|+++=++. ++.+|++.++.| .-++|..-+| |+.. ..+++.++
T Consensus 65 ~~~~~~~g~--~~v-~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l----~~~~v~~~AN~~~~~--~~~~~~L~ 129 (200)
T cd01075 65 ARAAELFGA--TVV-APEEIYS-VDADVFAPCAL-GGVINDDTIPQL----KAKAIAGAANNQLAD--PRHGQMLH 129 (200)
T ss_pred HHHHHHcCC--EEE-cchhhcc-ccCCEEEeccc-ccccCHHHHHHc----CCCEEEECCcCccCC--HhHHHHHH
Confidence 333333311 111 2233333 37999995555 679999999999 4678998888 6632 33455554
No 42
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.68 E-value=0.038 Score=60.66 Aligned_cols=111 Identities=19% Similarity=0.344 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhch
Q 007904 306 SVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK 385 (585)
Q Consensus 306 aV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~ 385 (585)
+|+-+|+=-|.+.. ..+++.|++|+|||.+|-.+|..|.. .|. ++|+++++. ..|...| ..
T Consensus 163 Sv~~~Av~la~~~~-~~l~~kkvlviGaG~~a~~va~~L~~-----~g~------~~I~V~nRt----~~ra~~L---a~ 223 (414)
T PRK13940 163 SVAFSAITLAKRQL-DNISSKNVLIIGAGQTGELLFRHVTA-----LAP------KQIMLANRT----IEKAQKI---TS 223 (414)
T ss_pred CHHHHHHHHHHHHh-cCccCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHHHH---HH
Confidence 33334443333333 35889999999999999888887754 365 689999884 2221111 11
Q ss_pred hhc-cccCCCCCHHHHhcccCCcEEEeccCCCC-CCCHHHHHHHHcCCCCcE-EEecCCCC
Q 007904 386 PWA-HEHEPVNNLLDAVKVIKPTILIGSSGVGR-TFTKEVIEAMASFNEKPL-ILALSNPT 443 (585)
Q Consensus 386 ~fa-~~~~~~~~L~e~v~~vkptvLIG~S~~~g-~Ft~evi~~Ma~~~erPI-IFaLSNPt 443 (585)
.|. ....+..+|.+++.. .|++|-+++.+. ++|++.++ .+|+ |+=||+|-
T Consensus 224 ~~~~~~~~~~~~l~~~l~~--aDiVI~aT~a~~~vi~~~~~~------~~~~~~iDLavPR 276 (414)
T PRK13940 224 AFRNASAHYLSELPQLIKK--ADIIIAAVNVLEYIVTCKYVG------DKPRVFIDISIPQ 276 (414)
T ss_pred HhcCCeEecHHHHHHHhcc--CCEEEECcCCCCeeECHHHhC------CCCeEEEEeCCCC
Confidence 221 011123456777775 999999887664 67866542 4665 46799997
No 43
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.66 E-value=0.16 Score=52.38 Aligned_cols=191 Identities=18% Similarity=0.176 Sum_probs=102.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhc-------hhhcc---------
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-------KPWAH--------- 389 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k-------~~fa~--------- 389 (585)
.||.|+|+|..|.+||..+... | .+++++|.+- . .+...+ ..+..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G-------~~V~l~d~~~----~---~l~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----G-------FDVTIYDISD----E---ALEKAKERIAKLADRYVRDLEATKEAP 64 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCCH----H---HHHHHHHHHHHHHHHHHHcCCCChhhh
Confidence 5899999999999999888653 5 3689998741 1 111111 01100
Q ss_pred --c-cC---CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccCcEEE
Q 007904 390 --E-HE---PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIF 463 (585)
Q Consensus 390 --~-~~---~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Grai~ 463 (585)
. .. ...++.++++. .|++|=+-...-.+.+++++...+.+....|++ ||.+++ .+.++.+.+.-..=|
T Consensus 65 ~~~~~~~i~~~~d~~~a~~~--aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~-sntSt~---~~~~~~~~~~~~~r~ 138 (287)
T PRK08293 65 AEAALNRITLTTDLAEAVKD--ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFA-TNSSTL---LPSQFAEATGRPEKF 138 (287)
T ss_pred HHHHHcCeEEeCCHHHHhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEE-ECcccC---CHHHHHhhcCCcccE
Confidence 0 00 13578888876 888885433222356778888877766666663 565544 444544433211113
Q ss_pred ecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccCccccCCCc-cc-CCCCCchhh
Q 007904 464 ASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGL-IY-PPFSNIRKI 541 (585)
Q Consensus 464 AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~-l~-P~i~~irev 541 (585)
....||.|+.... ..- +.....-+++.+ +.+..+...+. ... ++ |..- --|
T Consensus 139 vg~Hf~~p~~~~~---------lve----------vv~~~~t~~~~~-~~~~~~~~~~G-----k~pv~v~~d~p--gfi 191 (287)
T PRK08293 139 LALHFANEIWKNN---------TAE----------IMGHPGTDPEVF-DTVVAFAKAIG-----MVPIVLKKEQP--GYI 191 (287)
T ss_pred EEEcCCCCCCcCC---------eEE----------EeCCCCCCHHHH-HHHHHHHHHcC-----CeEEEecCCCC--CHh
Confidence 3346777754221 112 222233355544 44555554432 222 22 2222 245
Q ss_pred HHHHHHHHHHHHH---HcCCCCCCCCchhHHHHH
Q 007904 542 SANIAANVAAKAY---ELGVATRLPRPQNLVKCA 572 (585)
Q Consensus 542 s~~VA~aVa~~A~---~~GvA~~~~~~~dl~~~i 572 (585)
..++-.++...|. ++|+|+ ++|+....
T Consensus 192 ~nRi~~~~~~ea~~l~~~g~a~----~~~iD~a~ 221 (287)
T PRK08293 192 LNSLLVPFLSAALALWAKGVAD----PETIDKTW 221 (287)
T ss_pred HHHHHHHHHHHHHHHHHcCCCC----HHHHHHHH
Confidence 5566666666554 589885 45665544
No 44
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.59 E-value=0.25 Score=51.24 Aligned_cols=133 Identities=20% Similarity=0.150 Sum_probs=92.0
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEE-EEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~-lvD~~GLi~~~r~~~l~ 381 (585)
.||-=+.-++-.+++..+.+|+..||+|-|-|..|.+.|++|.+. |. +++ +.|++|-|++.. .|+
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~-----Ga-------kvvaVsD~~G~i~~~~--Gld 81 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLEL-----GA-------KVVTLSDSKGYVYDPD--GFT 81 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEECCCceEECCC--CCC
Confidence 466666777888888899999999999999999999999999763 63 455 999999998875 354
Q ss_pred hhch---------------hhccccCCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 007904 382 HFKK---------------PWAHEHEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 443 (585)
Q Consensus 382 ~~k~---------------~fa~~~~~~--~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt 443 (585)
..+. .|....+.. -+-.|.. .++.||||=+.. .+.+|++-+..+-+ +.-.||.--+| |+
T Consensus 82 ~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~-~~~~DIliPcAl-~~~I~~~na~~i~~-~~ak~I~EgAN~p~ 158 (254)
T cd05313 82 GEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPW-EVPCDIAFPCAT-QNEVDAEDAKLLVK-NGCKYVAEGANMPC 158 (254)
T ss_pred HHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchh-cCCCcEEEeccc-cccCCHHHHHHHHH-cCCEEEEeCCCCCC
Confidence 3221 110000000 1222322 457999997655 67999999998843 35789999998 87
Q ss_pred CcCCCCHHHHhc
Q 007904 444 SQSECTAEEAYT 455 (585)
Q Consensus 444 ~~~E~tpeda~~ 455 (585)
+ + .+++.+.
T Consensus 159 t-~--~a~~~L~ 167 (254)
T cd05313 159 T-A--EAIEVFR 167 (254)
T ss_pred C-H--HHHHHHH
Confidence 3 2 2445544
No 45
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.55 E-value=0.04 Score=57.27 Aligned_cols=90 Identities=18% Similarity=0.290 Sum_probs=57.3
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch-hchhhc
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-FKKPWA 388 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~-~k~~fa 388 (585)
.|++.+++..+..++.++++|+|||.||..++..|.. .|+ ++|+++|+. ..+.+.+.. .+..+.
T Consensus 112 ~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~-----~G~------~~I~I~nR~----~~ka~~la~~l~~~~~ 176 (284)
T PRK12549 112 SGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLT-----LGV------ERLTIFDVD----PARAAALADELNARFP 176 (284)
T ss_pred HHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHHHHHHHHHhhCC
Confidence 4567777766667888999999999999999888875 376 679999985 222222211 111111
Q ss_pred c-ccCCCCCHHHHhcccCCcEEEeccCCC
Q 007904 389 H-EHEPVNNLLDAVKVIKPTILIGSSGVG 416 (585)
Q Consensus 389 ~-~~~~~~~L~e~v~~vkptvLIG~S~~~ 416 (585)
. ......++.+.++. +|++|.++..|
T Consensus 177 ~~~~~~~~~~~~~~~~--aDiVInaTp~G 203 (284)
T PRK12549 177 AARATAGSDLAAALAA--ADGLVHATPTG 203 (284)
T ss_pred CeEEEeccchHhhhCC--CCEEEECCcCC
Confidence 0 00112345555654 89999887654
No 46
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.33 E-value=0.093 Score=50.76 Aligned_cols=54 Identities=31% Similarity=0.441 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
||+.+++.+..+++..|..+++.+++++|+ |..|..++..+.+ .| .++++++++
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~-----~g-------~~V~l~~R~ 61 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAR-----EG-------ARVVLVGRD 61 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHH-----CC-------CEEEEEcCC
Confidence 777888888888888899999999999997 9888888877764 24 468888764
No 47
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=94.97 E-value=0.13 Score=55.32 Aligned_cols=122 Identities=11% Similarity=0.164 Sum_probs=71.3
Q ss_pred chHHHHHHHHcCCCeeeccCCCchHHHHHHH--HHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhh
Q 007904 281 HNAFELLAKYGTTHLVFNDDIQGTASVVLAG--VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE 358 (585)
Q Consensus 281 ~~af~lL~ryr~~~~~FnDDiQGTaaV~lAg--ll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~ee 358 (585)
..||..=.|-|.+.- | |.++|.++. ...+ +.. ..|++.+++|+|||..|--+|+.|.+ .|+
T Consensus 136 ~~A~~~aKrVRteT~-----I-~~~~vSv~s~av~~~-~~~-~~l~~k~vLvIGaGem~~l~a~~L~~-----~g~---- 198 (338)
T PRK00676 136 QKALKEGKVFRSKGG-----A-PYAEVTIESVVQQEL-RRR-QKSKKASLLFIGYSEINRKVAYYLQR-----QGY---- 198 (338)
T ss_pred HHHHHHHHHHhhhcC-----C-CCCCcCHHHHHHHHH-HHh-CCccCCEEEEEcccHHHHHHHHHHHH-----cCC----
Confidence 345555555554321 1 444444443 3333 333 56999999999999998777776655 375
Q ss_pred hcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHH-HHhc-ccCCcEEEec----cCCCCCCCHHHHHHHHcCCC
Q 007904 359 TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLL-DAVK-VIKPTILIGS----SGVGRTFTKEVIEAMASFNE 432 (585)
Q Consensus 359 A~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~-e~v~-~vkptvLIG~----S~~~g~Ft~evi~~Ma~~~e 432 (585)
++|+++.+.-- + .+|.. +. +++. ..+.||+|-+ +++.-.++.+.++.. .+
T Consensus 199 --~~i~v~nRt~~----~--------~~~~~-------~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~---~~ 254 (338)
T PRK00676 199 --SRITFCSRQQL----T--------LPYRT-------VVREELSFQDPYDVIFFGSSESAYAFPHLSWESLADI---PD 254 (338)
T ss_pred --CEEEEEcCCcc----c--------cchhh-------hhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhhc---cC
Confidence 68999988631 1 22321 10 1111 1358999965 233345677665532 22
Q ss_pred CcEEEecCCCCC
Q 007904 433 KPLILALSNPTS 444 (585)
Q Consensus 433 rPIIFaLSNPt~ 444 (585)
| ++|=||+|-.
T Consensus 255 r-~~iDLAvPRd 265 (338)
T PRK00676 255 R-IVFDFNVPRT 265 (338)
T ss_pred c-EEEEecCCCC
Confidence 4 9999999984
No 48
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.81 E-value=0.27 Score=51.77 Aligned_cols=94 Identities=15% Similarity=0.183 Sum_probs=77.4
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-+|++..++..+.+|+..+++++|-|. .|.-+|.||.. .| ..+.+|+|+
T Consensus 137 ~~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~-----~~-------atVtv~hs~------------ 192 (285)
T PRK10792 137 LLRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLL-----AG-------CTVTVCHRF------------ 192 (285)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CC-------CeEEEEECC------------
Confidence 345778899999999999999999999999998 99999999864 24 357777664
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 440 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLS 440 (585)
..+|.+.+++ +|++|-+.+.++.|+.++|+ +.-+|+=..
T Consensus 193 ------------T~~l~~~~~~--ADIvi~avG~p~~v~~~~vk------~gavVIDvG 231 (285)
T PRK10792 193 ------------TKNLRHHVRN--ADLLVVAVGKPGFIPGEWIK------PGAIVIDVG 231 (285)
T ss_pred ------------CCCHHHHHhh--CCEEEEcCCCcccccHHHcC------CCcEEEEcc
Confidence 1358888887 99999999999999999997 666776655
No 49
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.72 E-value=0.11 Score=55.98 Aligned_cols=95 Identities=19% Similarity=0.317 Sum_probs=63.3
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc----cCCCCCHH
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLL 398 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~----~~~~~~L~ 398 (585)
+...+++|+|+|.+|.++++.+... |. ++.++|++ ..+ +......|... ......|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~l-----Ga-------~V~v~d~~----~~~---~~~l~~~~g~~v~~~~~~~~~l~ 225 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGL-----GA-------TVTILDIN----IDR---LRQLDAEFGGRIHTRYSNAYEIE 225 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHC-----CC-------eEEEEECC----HHH---HHHHHHhcCceeEeccCCHHHHH
Confidence 5678899999999999999988653 63 48889874 111 11111122110 11123577
Q ss_pred HHhcccCCcEEEeccCC-----CCCCCHHHHHHHHcCCCCcEEEecCC
Q 007904 399 DAVKVIKPTILIGSSGV-----GRTFTKEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 399 e~v~~vkptvLIG~S~~-----~g~Ft~evi~~Ma~~~erPIIFaLSN 441 (585)
++++. .|++|.+... +.++|++.++.|. ++.+|+-+|-
T Consensus 226 ~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk---~g~vIvDva~ 268 (370)
T TIGR00518 226 DAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMK---PGAVIVDVAI 268 (370)
T ss_pred HHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCC---CCCEEEEEec
Confidence 88875 8999987632 4568999999985 5678887774
No 50
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.69 E-value=0.076 Score=55.10 Aligned_cols=103 Identities=19% Similarity=0.166 Sum_probs=62.3
Q ss_pred CCeeeccCCCchHHHHHHHHHHHHHHhCC--CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 293 THLVFNDDIQGTASVVLAGVVAALKLIGG--TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 293 ~~~~FnDDiQGTaaV~lAgll~A~r~~g~--~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
++.=+|-|. .|++.+++..+. .+++.+++++|||.||-.|+-.|.+ .|. ++|+++++.
T Consensus 99 ~l~G~NTD~--------~G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~-----~G~------~~i~I~nRt- 158 (282)
T TIGR01809 99 IWKGDNTDW--------DGIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALAS-----LGV------TDITVINRN- 158 (282)
T ss_pred cEEEecCCH--------HHHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHH-----cCC------CeEEEEeCC-
Confidence 345567664 356777776663 5889999999999998888777654 376 789999874
Q ss_pred cccCCCccCCchhchhhcccc--CCCC---CHHHHhcccCCcEEEeccCCCCCCCHHH
Q 007904 371 LIVSSRKDSLQHFKKPWAHEH--EPVN---NLLDAVKVIKPTILIGSSGVGRTFTKEV 423 (585)
Q Consensus 371 Li~~~r~~~l~~~k~~fa~~~--~~~~---~L~e~v~~vkptvLIG~S~~~g~Ft~ev 423 (585)
..|.+.|.+ .|.... .... .+.+++. ++|++|.++..+-.++.+.
T Consensus 159 ---~~ka~~La~---~~~~~~~~~~~~~~~~~~~~~~--~~DiVInaTp~g~~~~~~~ 208 (282)
T TIGR01809 159 ---PDKLSRLVD---LGVQVGVITRLEGDSGGLAIEK--AAEVLVSTVPADVPADYVD 208 (282)
T ss_pred ---HHHHHHHHH---HhhhcCcceeccchhhhhhccc--CCCEEEECCCCCCCCCHHH
Confidence 222222221 111100 0111 2323343 4899999988764444443
No 51
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=94.47 E-value=0.09 Score=57.96 Aligned_cols=125 Identities=18% Similarity=0.285 Sum_probs=74.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhc-CCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-cCC-----CCCHH
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQT-KAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 398 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~-Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~~~-----~~~L~ 398 (585)
.||+|+||||+ -.-.|+..+.+.. .+ .-+.|||+|-+ .+|.+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l----~~~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~ 69 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEEL----PISEVTLYDID----EERLDIILTIAKRYVEEVGADIKFEKTMDLE 69 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhC----CCCEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 38999999995 4445555554322 34 24789999965 33322111212222222 112 25899
Q ss_pred HHhcccCCcEEEec--------------------------cCCCCCCC--------HHHHHHHHcCCCCcEEEecCCCCC
Q 007904 399 DAVKVIKPTILIGS--------------------------SGVGRTFT--------KEVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 399 e~v~~vkptvLIG~--------------------------S~~~g~Ft--------~evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
||+++ +|.+|-. .|+||.|. .++++.|.++|+.-+|+-.|||.
T Consensus 70 ~Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~- 146 (425)
T cd05197 70 DAIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPA- 146 (425)
T ss_pred HHhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChH-
Confidence 99998 8887721 23445443 48999999999999999999998
Q ss_pred cCCCCHHHHhccccCcEEEecC
Q 007904 445 QSECTAEEAYTWSKGRAIFASG 466 (585)
Q Consensus 445 ~~E~tpeda~~wt~Grai~AsG 466 (585)
.-+| +-+++++...-+|.+|
T Consensus 147 -di~t-~a~~~~~p~~rviG~c 166 (425)
T cd05197 147 -GEVT-EAVRRYVPPEKAVGLC 166 (425)
T ss_pred -HHHH-HHHHHhCCCCcEEEEC
Confidence 2222 2334445333345444
No 52
>PRK05086 malate dehydrogenase; Provisional
Probab=94.46 E-value=0.22 Score=52.57 Aligned_cols=104 Identities=24% Similarity=0.318 Sum_probs=67.1
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccC--CCCCHHHHhc
Q 007904 326 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE--PVNNLLDAVK 402 (585)
Q Consensus 326 ~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~--~~~~L~e~v~ 402 (585)
.||+|+|| |..|..+|.+|... .+. ...+.++|++-. ..+..-++.+. +....-. ...++.++++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~-----~~el~L~d~~~~-~~g~alDl~~~--~~~~~i~~~~~~d~~~~l~ 68 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPA-----GSELSLYDIAPV-TPGVAVDLSHI--PTAVKIKGFSGEDPTPALE 68 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCC-----ccEEEEEecCCC-CcceehhhhcC--CCCceEEEeCCCCHHHHcC
Confidence 48999999 99999999887542 132 256889997522 11110012110 1000000 1246778887
Q ss_pred ccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 403 VIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 403 ~vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+ .|++|=+.+.+ |. ..+++++.|.+++.+.+|+-.|||.
T Consensus 69 ~--~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 69 G--ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred C--CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 6 89888666553 21 5578999999999999999999999
No 53
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=94.43 E-value=0.28 Score=47.74 Aligned_cols=120 Identities=18% Similarity=0.281 Sum_probs=74.9
Q ss_pred CchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 302 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 302 QGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
.||+--++-|++ |.|+..|...++|++|-|--|-|+|+.+... | -++.++|.+
T Consensus 3 yG~g~S~~d~i~---r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~-----G-------a~V~V~e~D------------ 55 (162)
T PF00670_consen 3 YGTGQSLVDGIM---RATNLMLAGKRVVVIGYGKVGKGIARALRGL-----G-------ARVTVTEID------------ 55 (162)
T ss_dssp HHHHHHHHHHHH---HHH-S--TTSEEEEE--SHHHHHHHHHHHHT-----T--------EEEEE-SS------------
T ss_pred cccchhHHHHHH---hcCceeeCCCEEEEeCCCcccHHHHHHHhhC-----C-------CEEEEEECC------------
Confidence 366666666666 5688999999999999999999999998653 5 367777653
Q ss_pred hhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhc
Q 007904 382 HFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 455 (585)
Q Consensus 382 ~~k~~fa~-~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~ 455 (585)
|.+.-=|. +.-+..++.|+++. +|++|-+++..++.+.|.++.|. +.-|+.-..- ..-|+.-+..-+
T Consensus 56 Pi~alqA~~dGf~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mk---dgail~n~Gh--~d~Eid~~~L~~ 123 (162)
T PF00670_consen 56 PIRALQAAMDGFEVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMK---DGAILANAGH--FDVEIDVDALEA 123 (162)
T ss_dssp HHHHHHHHHTT-EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS----TTEEEEESSS--STTSBTHHHHHT
T ss_pred hHHHHHhhhcCcEecCHHHHHhh--CCEEEECCCCccccCHHHHHHhc---CCeEEeccCc--CceeEeeccccc
Confidence 22111111 21223579999986 99999999988899999999995 5556654442 236666665433
No 54
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.10 E-value=0.078 Score=45.16 Aligned_cols=94 Identities=13% Similarity=0.247 Sum_probs=62.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEE-cCCCcccCCCccCCchhchhhccccCCCC-CHHHHhccc
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHFKKPWAHEHEPVN-NLLDAVKVI 404 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lv-D~~GLi~~~r~~~l~~~k~~fa~~~~~~~-~L~e~v~~v 404 (585)
||.|+|+|..|..+++.+... |. ...+|+++ +++ .+.+...+..|... -.. +..|+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~- 61 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSRS-------PEKAAELAKEYGVQ--ATADDNEEAAQE- 61 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESS-------HHHHHHHHHHCTTE--EESEEHHHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccCc-------HHHHHHHHHhhccc--cccCChHHhhcc-
Confidence 789999999999999888764 65 34678855 553 12233333333211 112 68899996
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 442 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNP 442 (585)
+|++| ++-.+ ..-+++++.+....+..+|.-++||
T Consensus 62 -advvi-lav~p-~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 62 -ADVVI-LAVKP-QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp -TSEEE-E-S-G-GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred -CCEEE-EEECH-HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 99888 56555 4566788888667788999888886
No 55
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.09 E-value=0.081 Score=52.23 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=33.9
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
++|++.||+++|+|..|.-+|+.|+.+ |+ ++|+++|.+
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~-----Gv------~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGA-----GV------GTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEecCC
Confidence 578999999999999999999988764 87 799999997
No 56
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.00 E-value=0.2 Score=52.73 Aligned_cols=84 Identities=15% Similarity=0.158 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
-.-+|-+|++.=++..+.+++..+++++|.| ..|.-+|.+|.. .|. .+.+|+++
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~-----~gA-------tVtv~hs~------------- 190 (285)
T PRK14191 136 FVPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN-----AGA-------SVSVCHIL------------- 190 (285)
T ss_pred CCCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHH-----CCC-------EEEEEeCC-------------
Confidence 3457888899999999999999999999999 999999999965 253 45666442
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|...+.++.+++++|+
T Consensus 191 -----------t~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk 220 (285)
T PRK14191 191 -----------TKDLSFYTQN--ADIVCVGVGKPDLIKASMVK 220 (285)
T ss_pred -----------cHHHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1236778887 99999999999999999995
No 57
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.88 E-value=0.048 Score=50.99 Aligned_cols=105 Identities=22% Similarity=0.377 Sum_probs=65.7
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC-CcccCCCccCCchhchhhccccCCCCCHHHHhcc
Q 007904 326 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 403 (585)
Q Consensus 326 ~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~-GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~ 403 (585)
.||.|+|| |..|..+|-+|+.. |+ -++|.|+|.+ .... +..-+|.+..-+.-++..-..+..+.+++
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~-----~l-----~~ei~L~D~~~~~~~-g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~ 69 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ-----GL-----ADEIVLIDINEDKAE-GEALDLSHASAPLPSPVRITSGDYEALKD 69 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT-----TT-----SSEEEEEESSHHHHH-HHHHHHHHHHHGSTEEEEEEESSGGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhC-----CC-----CCceEEeccCcccce-eeehhhhhhhhhccccccccccccccccc
Confidence 38999999 99999999988763 66 3569999986 2111 11001221111110111111255677776
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 404 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 404 vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.|++|=+.+.+ |- +-+++.+.+.+++...|++-.|||.
T Consensus 70 --aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPv 121 (141)
T PF00056_consen 70 --ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPV 121 (141)
T ss_dssp --ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSH
T ss_pred --ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcH
Confidence 89998555443 21 2346778888999999999999998
No 58
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=93.54 E-value=0.16 Score=51.84 Aligned_cols=127 Identities=20% Similarity=0.305 Sum_probs=77.4
Q ss_pred EEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhh-ccccCCCCCHHHHhcccC
Q 007904 328 FLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNNLLDAVKVIK 405 (585)
Q Consensus 328 iv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~f-a~~~~~~~~L~e~v~~vk 405 (585)
|.|+|| |..|.++|..++.. |. .....++|+|.+.-..+....++.+...++ ...-....++.+++++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~-- 70 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKD-- 70 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCC--
Confidence 579999 99999999887653 42 123679999986411111111122222222 0011113567888987
Q ss_pred CcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccc--cCcEEEecCC
Q 007904 406 PTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGS 467 (585)
Q Consensus 406 ptvLIG~S~~~g~--------------Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt--~Grai~AsGS 467 (585)
.|++|=+.+.++. .-+++.+.|.++|...+++-.|||. .....-+++++ .-.-+|++|.
T Consensus 71 aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~---d~~t~~~~~~sg~~~~kviG~~~ 145 (263)
T cd00650 71 ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPV---DIITYLVWRYSGLPKEKVIGLGT 145 (263)
T ss_pred CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCchhEEEeec
Confidence 9988865544322 3578899999999999999999998 33334445552 2233666664
No 59
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.44 E-value=1.2 Score=45.94 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=27.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+|.|+|+|..|.+||..+... |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5799999999999999998763 64 68899874
No 60
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=93.34 E-value=0.22 Score=51.10 Aligned_cols=128 Identities=23% Similarity=0.312 Sum_probs=88.3
Q ss_pred CCCchHHHHHHHHHHHHHHhCCC-cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCcc
Q 007904 300 DIQGTASVVLAGVVAALKLIGGT-LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD 378 (585)
Q Consensus 300 DiQGTaaV~lAgll~A~r~~g~~-l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~ 378 (585)
--+-||-=+..++-.+++..+.. +++.||+|-|.|..|...|+.|.+. |. +=+-+-|++|.|++..+
T Consensus 6 ~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~-----Ga------~vv~vsD~~G~i~~~~G- 73 (244)
T PF00208_consen 6 RSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAEL-----GA------KVVAVSDSSGAIYDPDG- 73 (244)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHT-----TE------EEEEEEESSEEEEETTE-
T ss_pred CCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEecCceEEEcCCC-
Confidence 34567777888888999997766 9999999999999999999999873 63 44667799988886532
Q ss_pred CCchhch-hhccccCC-CCCHH-----------H--HhcccCCcEEEeccCCCCCCCHHHHH-HHHcCCCCcEEEecCC-
Q 007904 379 SLQHFKK-PWAHEHEP-VNNLL-----------D--AVKVIKPTILIGSSGVGRTFTKEVIE-AMASFNEKPLILALSN- 441 (585)
Q Consensus 379 ~l~~~k~-~fa~~~~~-~~~L~-----------e--~v~~vkptvLIG~S~~~g~Ft~evi~-~Ma~~~erPIIFaLSN- 441 (585)
|+.... .+...... ...+. + .+-.++.||||=+ +.++.+|++.+. .+. +.-+||.--+|
T Consensus 74 -ld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~I~~~~~~~~i~--~~akiIvegAN~ 149 (244)
T PF00208_consen 74 -LDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNVINEDNAPSLIK--SGAKIIVEGANG 149 (244)
T ss_dssp -EHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTSBSCHHHCHCHH--TT-SEEEESSSS
T ss_pred -chHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEc-CCCCeeCHHHHHHHHh--ccCcEEEeCcch
Confidence 321110 11111111 11111 1 3455799999988 557899999998 663 24789999999
Q ss_pred CC
Q 007904 442 PT 443 (585)
Q Consensus 442 Pt 443 (585)
|+
T Consensus 150 p~ 151 (244)
T PF00208_consen 150 PL 151 (244)
T ss_dssp SB
T ss_pred hc
Confidence 55
No 61
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=93.32 E-value=0.7 Score=43.73 Aligned_cols=89 Identities=19% Similarity=0.210 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhc
Q 007904 306 SVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 384 (585)
Q Consensus 306 aV~lAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k 384 (585)
-++..|++.-++..|.+++.++|+++|.+. .|.-+|.+|. + +| ..+.++|++.
T Consensus 9 p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~----~-~g-------atV~~~~~~t-------------- 62 (140)
T cd05212 9 SPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQ----R-DG-------ATVYSCDWKT-------------- 62 (140)
T ss_pred ccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHH----H-CC-------CEEEEeCCCC--------------
Confidence 467889999999999999999999999864 4545555554 3 35 3566776631
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEe
Q 007904 385 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 438 (585)
Q Consensus 385 ~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFa 438 (585)
.+|.|.+++ +|++|-..+.++.|+.++|+ +.-+|..
T Consensus 63 ----------~~l~~~v~~--ADIVvsAtg~~~~i~~~~ik------pGa~Vid 98 (140)
T cd05212 63 ----------IQLQSKVHD--ADVVVVGSPKPEKVPTEWIK------PGATVIN 98 (140)
T ss_pred ----------cCHHHHHhh--CCEEEEecCCCCccCHHHcC------CCCEEEE
Confidence 257788987 99999999999999999997 4555553
No 62
>PTZ00325 malate dehydrogenase; Provisional
Probab=93.28 E-value=0.48 Score=50.51 Aligned_cols=107 Identities=21% Similarity=0.285 Sum_probs=68.5
Q ss_pred cccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhc-cccCCCCCHHHH
Q 007904 323 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA-HEHEPVNNLLDA 400 (585)
Q Consensus 323 l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa-~~~~~~~~L~e~ 400 (585)
++-.||+|.|| |..|..+|..|.. .|+ ...+.|+|.+ .. ++-.-+|.+....+- .......+..++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~-----~~~-----~~elvL~Di~-~~-~g~a~Dl~~~~~~~~v~~~td~~~~~~~ 73 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQ-----NPH-----VSELSLYDIV-GA-PGVAADLSHIDTPAKVTGYADGELWEKA 73 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhc-----CCC-----CCEEEEEecC-CC-cccccchhhcCcCceEEEecCCCchHHH
Confidence 34469999999 9999999887753 244 3679999983 21 111111322111100 111111334688
Q ss_pred hcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 401 VKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 401 v~~vkptvLIG~S~~~g~--------------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+++ .|++|=+.+.+.. ..++++++|.+++.+.||+.-|||.
T Consensus 74 l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv 128 (321)
T PTZ00325 74 LRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128 (321)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 887 8988755554322 4568999999999999999999999
No 63
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=93.25 E-value=0.17 Score=55.71 Aligned_cols=125 Identities=14% Similarity=0.263 Sum_probs=73.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHh-hcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-cCC-----CCCHH
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISK-QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 398 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~-~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~~~-----~~~L~ 398 (585)
.||+|+||||+ -.-.++ ..|.+ ...+ ..+.|||+|-+- ..|-+.+...-+.+.+. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~--~tp~li-~~l~~~~~~l----~~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~ 70 (419)
T cd05296 1 MKLTIIGGGSS--YTPELI-EGLIRRYEEL----PVTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIKVHLTTDRR 70 (419)
T ss_pred CEEEEECCchH--hHHHHH-HHHHhccccC----CCCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 48999999996 333444 44433 2233 237899999852 12211011111112111 111 25799
Q ss_pred HHhcccCCcEEEeccCCCCC----------------------------------CCHHHHHHHHcCCCCcEEEecCCCCC
Q 007904 399 DAVKVIKPTILIGSSGVGRT----------------------------------FTKEVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 399 e~v~~vkptvLIG~S~~~g~----------------------------------Ft~evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
||++. +|.+|-.-.+||. .=.++++.|.++|+.-+|+=.|||..
T Consensus 71 ~al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ 148 (419)
T cd05296 71 EALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAG 148 (419)
T ss_pred HHhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHH
Confidence 99987 7887744433331 12388899999999999999999983
Q ss_pred cCCCCHHHHhccccCcEEEecC
Q 007904 445 QSECTAEEAYTWSKGRAIFASG 466 (585)
Q Consensus 445 ~~E~tpeda~~wt~Grai~AsG 466 (585)
+..+-+++++.-| +|.+|
T Consensus 149 ---ivt~a~~k~~~~r-viGlc 166 (419)
T cd05296 149 ---IVTEAVLRHTGDR-VIGLC 166 (419)
T ss_pred ---HHHHHHHHhccCC-EEeeC
Confidence 4444556666444 55544
No 64
>PRK08605 D-lactate dehydrogenase; Validated
Probab=93.22 E-value=1.5 Score=46.66 Aligned_cols=153 Identities=10% Similarity=0.170 Sum_probs=93.3
Q ss_pred HHHHHHHHHhcCCceeeeeecCCCchHHHHHHHHcCCCeeeccC-C--CchHHHHHHHHHHHHHH---------------
Q 007904 257 DEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDD-I--QGTASVVLAGVVAALKL--------------- 318 (585)
Q Consensus 257 defv~av~~~fGp~~lIq~EDf~~~~af~lL~ryr~~~~~FnDD-i--QGTaaV~lAgll~A~r~--------------- 318 (585)
.|++++..+ .|- -+|+.-=.+..| ..+-.--+..+.+.|-- . +..|=-+++.+|+.+|.
T Consensus 59 ~~~l~~~~~-~~l-k~I~~~~~G~d~-id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~ 135 (332)
T PRK08605 59 EAIYKLLNE-LGI-KQIAQRSAGFDT-YDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRW 135 (332)
T ss_pred HHHHHhhhh-cCc-eEEEEcccccch-hhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCccc
Confidence 455555543 111 125544333333 33333334678777742 2 34555678888876652
Q ss_pred ----hCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCC
Q 007904 319 ----IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV 394 (585)
Q Consensus 319 ----~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~ 394 (585)
.|..|.+++|.|+|.|..|..+|+.+..+ .|+ ++|.+|+.. . ... ..++ ...
T Consensus 136 ~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~----~g~-------~V~~~d~~~----~--~~~----~~~~---~~~ 191 (332)
T PRK08605 136 EPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKG----YGS-------DVVAYDPFP----N--AKA----ATYV---DYK 191 (332)
T ss_pred ccccccceeCCCEEEEECCCHHHHHHHHHHHhc----CCC-------EEEEECCCc----c--HhH----Hhhc---ccc
Confidence 13458899999999999999999998543 254 688888742 1 001 1111 123
Q ss_pred CCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007904 395 NNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 395 ~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi~~Ma~~~erPIIFaLSN 441 (585)
.+|.|+++. .|+++=+. ...++|+++.++.|. +..++.=+|.
T Consensus 192 ~~l~ell~~--aDvIvl~lP~t~~t~~li~~~~l~~mk---~gailIN~sR 237 (332)
T PRK08605 192 DTIEEAVEG--ADIVTLHMPATKYNHYLFNADLFKHFK---KGAVFVNCAR 237 (332)
T ss_pred CCHHHHHHh--CCEEEEeCCCCcchhhhcCHHHHhcCC---CCcEEEECCC
Confidence 579999987 89888542 123577888888885 6678777765
No 65
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.17 E-value=0.67 Score=52.48 Aligned_cols=228 Identities=17% Similarity=0.229 Sum_probs=114.4
Q ss_pred CeeEEEEeeCcccccCCCCC--CcccccchhhHHHHHHhcCCCCCceeeEEeccCCCc----hhcccCccccccccCCCC
Q 007904 175 SIQVIVVTDGERILGLGDLG--CQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNN----EQLLKDEFYIGLRQRRAT 248 (585)
Q Consensus 175 ~v~viVVTDG~rILGLGDlG--~~GmgI~iGKl~LY~a~gGI~P~~~lPV~LDvGTnn----e~Ll~DP~YlG~r~~R~~ 248 (585)
+.+|+|=++.+--.|+-|-= ..|..|.-.+ .+| . .| |+|-|.... +.|.++-.++|+-|+--.
T Consensus 30 G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~-~v~-~---~d------iilkV~~P~~~e~~~l~~g~~li~~l~p~~~ 98 (509)
T PRK09424 30 GFEVVVESGAGQLASFDDAAYREAGAEIVDGA-AVW-Q---SD------IILKVNAPSDDEIALLREGATLVSFIWPAQN 98 (509)
T ss_pred CCEEEEeCCCCcCCCCCHHHHHHCCCEEecCc-ccc-c---CC------EEEEeCCCCHHHHHhcCCCCEEEEEeCcccC
Confidence 46777777755555665621 1233332222 233 1 22 444444332 245566677777776322
Q ss_pred hhhhHHHHHHHHHHHHHhcCCceeeeeecCCC-chHHHHHHHHcCCCeeeccCCCchHHHHHHHHHHHHHHhC-----CC
Q 007904 249 GQEYAELLDEFMSAVKQNYGEKVLIQFEDFAN-HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIG-----GT 322 (585)
Q Consensus 249 g~~y~~~idefv~av~~~fGp~~lIq~EDf~~-~~af~lL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g-----~~ 322 (585)
.|.++++.++ .=.+|-+|.+-. .+|. +-+...-+-.|-|=-+|..|+-.-.--..| ..
T Consensus 99 --------~~l~~~l~~~--~it~ia~e~vpr~sraq------~~d~lssma~IAGy~Av~~aa~~~~~~~~g~~taaG~ 162 (509)
T PRK09424 99 --------PELLEKLAAR--GVTVLAMDAVPRISRAQ------SLDALSSMANIAGYRAVIEAAHEFGRFFTGQITAAGK 162 (509)
T ss_pred --------HHHHHHHHHc--CCEEEEeecccccccCC------CcccccchhhhhHHHHHHHHHHHhcccCCCceeccCC
Confidence 2333333332 234566776542 1111 012222234455655554443322111111 13
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCcc---CC------------chhchhh
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD---SL------------QHFKKPW 387 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~---~l------------~~~k~~f 387 (585)
....|++|+|||.+|.+.+..... .| | +++.+|.+ ..|.+ .+ ......|
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~-----lG-----A--~V~a~D~~----~~rle~aeslGA~~v~i~~~e~~~~~~gy 226 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGS-----LG-----A--IVRAFDTR----PEVAEQVESMGAEFLELDFEEEGGSGDGY 226 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEeCC----HHHHHHHHHcCCeEEEeccccccccccch
Confidence 458999999999999888776654 26 3 47788764 11100 00 0011122
Q ss_pred ccccCCCCCHHHHh-----cc-cCCcEEEeccCCCC-----CCCHHHHHHHHcCCCCcEEEecCCCC-CcCCCCH
Q 007904 388 AHEHEPVNNLLDAV-----KV-IKPTILIGSSGVGR-----TFTKEVIEAMASFNEKPLILALSNPT-SQSECTA 450 (585)
Q Consensus 388 a~~~~~~~~L~e~v-----~~-vkptvLIG~S~~~g-----~Ft~evi~~Ma~~~erPIIFaLSNPt-~~~E~tp 450 (585)
++... .++.+.. +. -+.|++|.+++.+| +++++.++.|. +.-+|.=++.+. ..+|++.
T Consensus 227 a~~~s--~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mk---pGgvIVdvg~~~GG~~e~t~ 296 (509)
T PRK09424 227 AKVMS--EEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMK---PGSVIVDLAAENGGNCELTV 296 (509)
T ss_pred hhhcc--hhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcC---CCCEEEEEccCCCCCccccc
Confidence 22210 1221211 11 14999999999866 67999999996 555666677653 3345553
No 66
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=93.12 E-value=0.33 Score=50.76 Aligned_cols=125 Identities=14% Similarity=0.229 Sum_probs=74.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc--CCCCCHHHHhccc
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKVI 404 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~--~~~~~L~e~v~~v 404 (585)
||.|+|+|.+|..+|..|+. .|+ ..+|+++|++-=..++-..+|.+.. .+.... -...+. +.+++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-----~g~-----~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~-~~l~~- 68 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-----QGI-----ADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDY-SDCKD- 68 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCH-HHhCC-
Confidence 89999999999999998765 265 2579999985221111111121111 111100 011233 34554
Q ss_pred CCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhcccc--CcEEEecCCC
Q 007904 405 KPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFASGSP 468 (585)
Q Consensus 405 kptvLIG~S~~~g~--------------Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~--Grai~AsGSP 468 (585)
.|++|=+++.+.. +=+++.+.|.+++..-+|+-.|||.. +...-+++++. -+-+|++|.-
T Consensus 69 -aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d---~~~~~~~~~~g~p~~~v~g~gt~ 144 (306)
T cd05291 69 -ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVD---VITYVVQKLSGLPKNRVIGTGTS 144 (306)
T ss_pred -CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHH---HHHHHHHHHhCcCHHHEeeccch
Confidence 9999977776521 12577888899999999999999983 34444444421 1346676654
No 67
>PRK08328 hypothetical protein; Provisional
Probab=93.09 E-value=0.051 Score=54.82 Aligned_cols=120 Identities=18% Similarity=0.206 Sum_probs=73.0
Q ss_pred HHHHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEE
Q 007904 287 LAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 366 (585)
Q Consensus 287 L~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lv 366 (585)
++||..++..|..+. -.+|++.||+++|+|..|.-||..|+.+ |+ ++|.++
T Consensus 7 ~~ry~Rq~~~~g~~~------------------q~~L~~~~VlIiG~GGlGs~ia~~La~~-----Gv------g~i~lv 57 (231)
T PRK08328 7 LERYDRQIMIFGVEG------------------QEKLKKAKVAVVGVGGLGSPVAYYLAAA-----GV------GRILLI 57 (231)
T ss_pred HHHHhhHHHhcCHHH------------------HHHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEE
Confidence 578877776665421 2567889999999999999999999874 87 789999
Q ss_pred cCCCcccCCCccCCchhchhhccccCCC----CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE-ecCC
Q 007904 367 DSKGLIVSSRKDSLQHFKKPWAHEHEPV----NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL-ALSN 441 (585)
Q Consensus 367 D~~GLi~~~r~~~l~~~k~~fa~~~~~~----~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIF-aLSN 441 (585)
|.+= +.. .+|.. |--|-.+.-.. ....+.++...|++.|=... +-++++-+...-+ +.-+|| +.-|
T Consensus 58 D~D~-ve~---sNL~R-q~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~--~~~~~~~~~~~l~--~~D~Vid~~d~ 128 (231)
T PRK08328 58 DEQT-PEL---SNLNR-QILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV--GRLSEENIDEVLK--GVDVIVDCLDN 128 (231)
T ss_pred cCCc-cCh---hhhcc-ccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe--ccCCHHHHHHHHh--cCCEEEECCCC
Confidence 9862 111 12432 11111111111 12344567778988876533 3466665554332 445776 4557
Q ss_pred CCC
Q 007904 442 PTS 444 (585)
Q Consensus 442 Pt~ 444 (585)
+.+
T Consensus 129 ~~~ 131 (231)
T PRK08328 129 FET 131 (231)
T ss_pred HHH
Confidence 653
No 68
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=93.08 E-value=0.62 Score=46.74 Aligned_cols=103 Identities=19% Similarity=0.292 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHhC---------CCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCC
Q 007904 306 SVVLAGVVAALKLIG---------GTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS 375 (585)
Q Consensus 306 aV~lAgll~A~r~~g---------~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~ 375 (585)
-+|-.|++.=++..+ .+++.++++++|-+ ..|.-+|.||.. .| ..+.+||++|.....
T Consensus 34 PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~~~~ 101 (197)
T cd01079 34 PCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQVFT 101 (197)
T ss_pred CCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCcccccc
Confidence 445566666666654 48999999999986 467788887764 25 468899999988765
Q ss_pred CccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCC-CCHHHHH
Q 007904 376 RKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIE 425 (585)
Q Consensus 376 r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~-Ft~evi~ 425 (585)
+...+...+.+. .....+|.|.+++ +|++|-..+.++. ++.|+|+
T Consensus 102 ~~~~~~hs~t~~---~~~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik 147 (197)
T cd01079 102 RGESIRHEKHHV---TDEEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLK 147 (197)
T ss_pred cccccccccccc---cchhhHHHHHhhh--CCEEEEccCCCCCccCHHHcC
Confidence 533221111000 0111248888987 9999999999998 8999997
No 69
>PRK08223 hypothetical protein; Validated
Probab=92.84 E-value=0.19 Score=53.00 Aligned_cols=127 Identities=13% Similarity=0.029 Sum_probs=74.5
Q ss_pred HHHHHHHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeE
Q 007904 284 FELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI 363 (585)
Q Consensus 284 f~lL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i 363 (585)
|..-++|..++..|..+-| .+|++.||+|+|+|..|.-+|..|+.+ |+ .+|
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q------------------~kL~~s~VlIvG~GGLGs~va~~LA~a-----GV------G~i 54 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQ------------------QRLRNSRVAIAGLGGVGGIHLLTLARL-----GI------GKF 54 (287)
T ss_pred ccHHHHHhhhhhhcCHHHH------------------HHHhcCCEEEECCCHHHHHHHHHHHHh-----CC------CeE
Confidence 5566777666655543322 578899999999999999999998875 87 789
Q ss_pred EEEcCCCcccCCCc-------cCCchhchhhccc-----cC---------C--CCCHHHHhcccCCcEEEeccCCCCCCC
Q 007904 364 CLVDSKGLIVSSRK-------DSLQHFKKPWAHE-----HE---------P--VNNLLDAVKVIKPTILIGSSGVGRTFT 420 (585)
Q Consensus 364 ~lvD~~GLi~~~r~-------~~l~~~k~~fa~~-----~~---------~--~~~L~e~v~~vkptvLIG~S~~~g~Ft 420 (585)
.++|.+=.=..+-. +++-..|..-|.+ .+ . ..++.+.++. .|++|=++--...=+
T Consensus 55 ~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~--~DlVvD~~D~~~~~~ 132 (287)
T PRK08223 55 TIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIGKENADAFLDG--VDVYVDGLDFFEFDA 132 (287)
T ss_pred EEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccCccCHHHHHhC--CCEEEECCCCCcHHH
Confidence 99998733221110 0111112221110 00 1 1245566654 677763332110015
Q ss_pred HHHHHHHHcCCCCcEEEecCC
Q 007904 421 KEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 421 ~evi~~Ma~~~erPIIFaLSN 441 (585)
.-+|-..+.....|.|.+-+.
T Consensus 133 r~~ln~~c~~~~iP~V~~~~~ 153 (287)
T PRK08223 133 RRLVFAACQQRGIPALTAAPL 153 (287)
T ss_pred HHHHHHHHHHcCCCEEEEecc
Confidence 566777777777888886443
No 70
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=92.77 E-value=0.24 Score=51.82 Aligned_cols=49 Identities=31% Similarity=0.413 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.|++.+++..+..+++.+++++|||-|+-+|+-.+.. .|+ ++|+++++.
T Consensus 109 ~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 109 TGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 4667788888888999999999999998877666643 376 789999984
No 71
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.72 E-value=1.5 Score=49.13 Aligned_cols=123 Identities=16% Similarity=0.218 Sum_probs=69.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchh------------chhhccc--c
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF------------KKPWAHE--H 391 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~------------k~~fa~~--~ 391 (585)
.||.|+|+|..|.+||..++.+ |. ++.++|.. .+..+.+... +.++... .
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i 68 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDPH----PEAERIIGEVLANAERAYAMLTDAPLPPEGRL 68 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCC----HHHHHHHHHHHHHHHHHHhhhccchhhhhhce
Confidence 4799999999999999999764 64 68888873 1110111100 0001110 1
Q ss_pred CCCCCHHHHhcccCCcEEEeccCCCCC-CCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhcc--ccCcEEEecCCC
Q 007904 392 EPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW--SKGRAIFASGSP 468 (585)
Q Consensus 392 ~~~~~L~e~v~~vkptvLIG~S~~~g~-Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~w--t~Grai~AsGSP 468 (585)
....++.|++++ .|++| .+.+... +.+++.+.+.+..+.-.|+..|--. .+ +.+.-+. ..|+++++ -|
T Consensus 69 ~~~~~~~ea~~~--aD~Vi-eavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsg--i~--~s~l~~~~~~~~r~~~~--hP 139 (495)
T PRK07531 69 TFCASLAEAVAG--ADWIQ-ESVPERLDLKRRVLAEIDAAARPDALIGSSTSG--FL--PSDLQEGMTHPERLFVA--HP 139 (495)
T ss_pred EeeCCHHHHhcC--CCEEE-EcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCC--CC--HHHHHhhcCCcceEEEE--ec
Confidence 123578899987 88888 4444432 4566666666665555666554322 22 3333332 24555554 58
Q ss_pred CCcce
Q 007904 469 FDPFE 473 (585)
Q Consensus 469 f~pv~ 473 (585)
|.|+.
T Consensus 140 ~nP~~ 144 (495)
T PRK07531 140 YNPVY 144 (495)
T ss_pred CCCcc
Confidence 88774
No 72
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=92.58 E-value=0.24 Score=53.70 Aligned_cols=102 Identities=22% Similarity=0.267 Sum_probs=64.9
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCC-c-------cCCchhchhhccc--
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR-K-------DSLQHFKKPWAHE-- 390 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r-~-------~~l~~~k~~fa~~-- 390 (585)
++|++.||+|+|+|..|.-+|..|+.+ |+ ++|.++|.+=+ ..+. . +++-..|..-+..
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~-----Gv------g~i~ivD~D~v-e~sNL~RQ~l~~~~diG~~Ka~~~~~~l 104 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASA-----GV------GTITLIDDDTV-DVSNIHRQILFGASDVGRPKVEVAAERL 104 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEeCCEE-ccccccccccCChhHCCCHHHHHHHHHH
Confidence 678899999999999999999999874 87 78999998732 2111 0 0111111111110
Q ss_pred ---cCC---------C--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEe
Q 007904 391 ---HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 438 (585)
Q Consensus 391 ---~~~---------~--~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFa 438 (585)
.+. . .++.+.+++ .|++|.++.-. =++-+|..++.....|.|++
T Consensus 105 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~DlVid~~Dn~--~~r~~in~~~~~~~iP~v~~ 162 (370)
T PRK05600 105 KEIQPDIRVNALRERLTAENAVELLNG--VDLVLDGSDSF--ATKFLVADAAEITGTPLVWG 162 (370)
T ss_pred HHHCCCCeeEEeeeecCHHHHHHHHhC--CCEEEECCCCH--HHHHHHHHHHHHcCCCEEEE
Confidence 011 1 135556655 78888776532 25667777787778888886
No 73
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=92.53 E-value=0.28 Score=51.87 Aligned_cols=126 Identities=14% Similarity=0.260 Sum_probs=76.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-cCCCCCHHHHhccc
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVI 404 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~~~~~~L~e~v~~v 404 (585)
.||.|+|||..|..+|-+|+. .|+ ...|.|+|.+-=..++-.-+|.+.. +|-+. .-..++. +.+++
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~-----~~~-----~~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~-~~~~~- 73 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVN-----QGI-----ADELVIIDINKEKAEGDAMDLSHAV-PFTSPTKIYAGDY-SDCKD- 73 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCchhHHHHHHHHhhc-cccCCeEEEeCCH-HHhCC-
Confidence 599999999999999998764 366 3679999974211111111122211 22111 0011344 45666
Q ss_pred CCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccc--cCcEEEecCCC
Q 007904 405 KPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGSP 468 (585)
Q Consensus 405 kptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt--~Grai~AsGSP 468 (585)
.|++|=+.+.+ |- +=+++++.|.+++...+|+-.|||. +....-+++++ +-+-+|++|.-
T Consensus 74 -adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~---d~~~~~~~k~sg~p~~~viG~gt~ 149 (315)
T PRK00066 74 -ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPV---DILTYATWKLSGFPKERVIGSGTS 149 (315)
T ss_pred -CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcH---HHHHHHHHHHhCCCHHHEeecCch
Confidence 99998665553 21 1256788899999999999999998 33444555554 22336666543
No 74
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=92.52 E-value=0.34 Score=50.46 Aligned_cols=58 Identities=29% Similarity=0.309 Sum_probs=42.9
Q ss_pred CCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 293 THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 293 ~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
++.=+|-| ..|++.+++..+..+++++++|+|||-+|-+|+..+.. .|. ++|+++++.
T Consensus 102 ~l~G~NTD--------~~G~~~~l~~~~~~~~~k~vlI~GAGGagrAia~~La~-----~G~------~~V~I~~R~ 159 (289)
T PRK12548 102 KLTGHITD--------GLGFVRNLREHGVDVKGKKLTVIGAGGAATAIQVQCAL-----DGA------KEITIFNIK 159 (289)
T ss_pred EEEEEecC--------HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 45566777 45677888877778888999999998777666655543 375 679999874
No 75
>PTZ00117 malate dehydrogenase; Provisional
Probab=92.48 E-value=0.53 Score=49.78 Aligned_cols=126 Identities=21% Similarity=0.339 Sum_probs=76.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc---CCCCCHHHH
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 400 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~---~~~~~L~e~ 400 (585)
+..||.|+|||+.|.++|.+++. .|+ ..+.|+|.+-=...+..-++... ..+.... ....+++ +
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~-----~~~------~~l~L~Di~~~~~~g~~lDl~~~-~~~~~~~~~i~~~~d~~-~ 70 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQ-----KNL------GDVVLYDVIKGVPQGKALDLKHF-STLVGSNINILGTNNYE-D 70 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHH-----CCC------CeEEEEECCCccchhHHHHHhhh-ccccCCCeEEEeCCCHH-H
Confidence 45699999999999999988765 265 24999997521111110012111 1111110 1124565 6
Q ss_pred hcccCCcEEEeccCCCC--------------CCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhcccc--CcEEEe
Q 007904 401 VKVIKPTILIGSSGVGR--------------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFA 464 (585)
Q Consensus 401 v~~vkptvLIG~S~~~g--------------~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~--Grai~A 464 (585)
+++ .|++|=+.+.+. -+-+++.+.|.++|+.-+++-.|||.. .....+++++. =.-+|+
T Consensus 71 l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~d---i~t~~~~~~s~~p~~rviG 145 (319)
T PTZ00117 71 IKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLD---CMVKVFQEKSGIPSNKICG 145 (319)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHH---HHHHHHHHhhCCCcccEEE
Confidence 666 898886665543 123489999999999998888899982 23445555542 134666
Q ss_pred cCC
Q 007904 465 SGS 467 (585)
Q Consensus 465 sGS 467 (585)
+|+
T Consensus 146 ~gt 148 (319)
T PTZ00117 146 MAG 148 (319)
T ss_pred ecc
Confidence 664
No 76
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=92.38 E-value=0.98 Score=49.35 Aligned_cols=159 Identities=13% Similarity=0.115 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchh
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 383 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 383 (585)
.|=-+++.+++..|..|..|.+.++.|+|.|..|..+|+.+... |+ +++.+|... .. . .
T Consensus 95 VAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~-----G~-------~V~~~Dp~~------~~-~-~- 153 (381)
T PRK00257 95 VVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGL-----GW-------KVLVCDPPR------QE-A-E- 153 (381)
T ss_pred HHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECCcc------cc-c-c-
Confidence 34457899999999999999999999999999999999998753 75 578888631 00 0 0
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEe-cc-------CCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhc
Q 007904 384 KKPWAHEHEPVNNLLDAVKVIKPTILIG-SS-------GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 455 (585)
Q Consensus 384 k~~fa~~~~~~~~L~e~v~~vkptvLIG-~S-------~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~ 455 (585)
......+|.|+++. .|+++= +. ..-++|+++.+..|. +..++.=.|. -++--++|+.
T Consensus 154 ------~~~~~~~l~ell~~--aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk---~gailIN~aR----G~vVde~AL~ 218 (381)
T PRK00257 154 ------GDGDFVSLERILEE--CDVISLHTPLTKEGEHPTRHLLDEAFLASLR---PGAWLINASR----GAVVDNQALR 218 (381)
T ss_pred ------cCccccCHHHHHhh--CCEEEEeCcCCCCccccccccCCHHHHhcCC---CCeEEEECCC----CcccCHHHHH
Confidence 00123579998886 887762 11 123799999999996 6778876654 4444444442
Q ss_pred c--ccCcEEEecCCCC--CcceeCCeeeCcCCCcccccchhhhHHHHHhCCc
Q 007904 456 W--SKGRAIFASGSPF--DPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAI 503 (585)
Q Consensus 456 w--t~Grai~AsGSPf--~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~ 503 (585)
- ..|+...|.=-=| +|. .+.... ..|..+-|=|+-....++.+
T Consensus 219 ~aL~~g~i~~a~LDV~e~EP~-~~~~L~----~~nvi~TPHiAg~s~e~~~r 265 (381)
T PRK00257 219 EALLSGEDLDAVLDVWEGEPQ-IDLELA----DLCTIATPHIAGYSLDGKAR 265 (381)
T ss_pred HHHHhCCCcEEEEeCCCCCCC-CChhhh----hCCEEEcCccccCCHHHHHH
Confidence 1 2444322211111 111 111111 13778888777555555433
No 77
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.38 E-value=0.76 Score=48.82 Aligned_cols=93 Identities=14% Similarity=0.272 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
-.-+|-+|++.=++..|.+++.++|+|+|.| ..|..+|.+|.+. | ..+.+++++ .
T Consensus 138 ~~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~-----g-------atVtv~~~~--------t---- 193 (301)
T PRK14194 138 LTPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQA-----H-------CSVTVVHSR--------S---- 193 (301)
T ss_pred CCCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHC-----C-------CEEEEECCC--------C----
Confidence 3466788889999999999999999999996 9999999999763 5 357777653 0
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 440 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLS 440 (585)
.++.|++++ +|++|=+-+.++.+++++++ +.-||.=.|
T Consensus 194 ------------~~l~e~~~~--ADIVIsavg~~~~v~~~~ik------~GaiVIDvg 231 (301)
T PRK14194 194 ------------TDAKALCRQ--ADIVVAAVGRPRLIDADWLK------PGAVVIDVG 231 (301)
T ss_pred ------------CCHHHHHhc--CCEEEEecCChhcccHhhcc------CCcEEEEec
Confidence 168899987 99999999989999988854 556776666
No 78
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.23 E-value=0.53 Score=49.60 Aligned_cols=85 Identities=19% Similarity=0.293 Sum_probs=69.1
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcchH-HHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEA-GTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsA-g~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-.|++.-++..+.++++.+++++|.|.- |.-+|.+|.. .| ..+.+|+++
T Consensus 136 ~~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~-------atVt~~hs~------------ 191 (285)
T PRK14189 136 LFRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQ-----AG-------ATVTICHSK------------ 191 (285)
T ss_pred CCcCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEecCC------------
Confidence 3456788899999999999999999999999988 9999999865 25 345665442
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.|+.++++
T Consensus 192 ------------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik 221 (285)
T PRK14189 192 ------------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVK 221 (285)
T ss_pred ------------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357788887 99999999999999998886
No 79
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=92.17 E-value=0.46 Score=47.62 Aligned_cols=38 Identities=37% Similarity=0.510 Sum_probs=34.3
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~-----Gv------g~i~lvD~D 54 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAA-----GV------GKLGLVDDD 54 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 478899999999999999999999874 87 899999987
No 80
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=92.10 E-value=0.31 Score=50.88 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.|++.+++..+..+++.+++++|||-||-+|+-.|.+ .|. ++|+++|+.
T Consensus 112 ~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 160 (283)
T PRK14027 112 SGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVT-----HGV------QKLQVADLD 160 (283)
T ss_pred HHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEcCC
Confidence 3567777755556788999999999999988877765 376 789999984
No 81
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=92.03 E-value=0.6 Score=49.55 Aligned_cols=124 Identities=18% Similarity=0.289 Sum_probs=73.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc---CCCCCHHHHh
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDAV 401 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~---~~~~~L~e~v 401 (585)
-.||.|+|||..|.++|.+++. .|+ ..+.|+|.+-=...+..-++.+ ...+.... ...+++ +++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~-----~gl------~~i~LvDi~~~~~~~~~ld~~~-~~~~~~~~~~I~~~~d~-~~l 72 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVL-----KNL------GDVVLFDIVKNIPQGKALDISH-SNVIAGSNSKVIGTNNY-EDI 72 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CCC------CeEEEEeCCCchhhHHHHHHHh-hhhccCCCeEEEECCCH-HHh
Confidence 3699999999999999988654 376 2399999753221111101111 11111111 112456 567
Q ss_pred cccCCcEEEeccCCCCCC-------------------CHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhcccc--Cc
Q 007904 402 KVIKPTILIGSSGVGRTF-------------------TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GR 460 (585)
Q Consensus 402 ~~vkptvLIG~S~~~g~F-------------------t~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~--Gr 460 (585)
++ .|++|=+.+.++-- -.++++.|.+++..-+++--|||.+ .....+++++. -.
T Consensus 73 ~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~d---i~t~~~~~~sg~p~~ 147 (321)
T PTZ00082 73 AG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLD---VMVKLLQEHSGLPKN 147 (321)
T ss_pred CC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH---HHHHHHHHhcCCChh
Confidence 66 89998655544321 2478888999998879999999982 22333444432 13
Q ss_pred EEEecC
Q 007904 461 AIFASG 466 (585)
Q Consensus 461 ai~AsG 466 (585)
-+|++|
T Consensus 148 rviGlg 153 (321)
T PTZ00082 148 KVCGMA 153 (321)
T ss_pred hEEEec
Confidence 466666
No 82
>PLN02928 oxidoreductase family protein
Probab=92.00 E-value=1.6 Score=46.89 Aligned_cols=139 Identities=16% Similarity=0.162 Sum_probs=86.4
Q ss_pred chHHHHHHHHHHHHHH----------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEE
Q 007904 303 GTASVVLAGVVAALKL----------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 366 (585)
Q Consensus 303 GTaaV~lAgll~A~r~----------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lv 366 (585)
.+|--+++.+|+.+|. .+..|.++++.|+|.|..|..+|+.+... |+ +++.+
T Consensus 121 ~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~af-----G~-------~V~~~ 188 (347)
T PLN02928 121 SCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPF-----GV-------KLLAT 188 (347)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhhC-----CC-------EEEEE
Confidence 4566677777777663 24579999999999999999999998643 75 58888
Q ss_pred cCCCcccCCCccCC--c-hhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEec
Q 007904 367 DSKGLIVSSRKDSL--Q-HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILAL 439 (585)
Q Consensus 367 D~~GLi~~~r~~~l--~-~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi~~Ma~~~erPIIFaL 439 (585)
|+.. .......+ + ..-..+........+|.|+++. .|+++-.- ...++|+++.+..|. +..+|.=.
T Consensus 189 dr~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk---~ga~lINv 261 (347)
T PLN02928 189 RRSW--TSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMK---KGALLVNI 261 (347)
T ss_pred CCCC--ChhhhhhhccccccccccccccCcccCHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCC---CCeEEEEC
Confidence 8752 11000000 0 0000011111134589999987 89998652 224799999999995 56677766
Q ss_pred CCCCCcCCCCHHHHhc-c-ccCcEEEe
Q 007904 440 SNPTSQSECTAEEAYT-W-SKGRAIFA 464 (585)
Q Consensus 440 SNPt~~~E~tpeda~~-w-t~Grai~A 464 (585)
|. .++--|+|+- . ..|+.-.|
T Consensus 262 aR----G~lVde~AL~~AL~~g~i~gA 284 (347)
T PLN02928 262 AR----GGLLDYDAVLAALESGHLGGL 284 (347)
T ss_pred CC----ccccCHHHHHHHHHcCCeeEE
Confidence 64 4455454442 1 35655433
No 83
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.98 E-value=0.35 Score=51.72 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=34.9
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
.+|++.||+|+|+|..|.-+|+.|+.+ |+ .+|.++|.+=
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~a-----Gv------g~i~lvD~D~ 58 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRA-----GI------GKLTIADRDY 58 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCc
Confidence 578899999999999999999999875 87 7899999974
No 84
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=91.96 E-value=0.43 Score=51.43 Aligned_cols=38 Identities=32% Similarity=0.448 Sum_probs=33.4
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+|++.||+++|+|..|..||..|+.+ |+ ++|.++|.+
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~-----Gv------g~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAA-----GV------GTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 367889999999999999999999774 87 789999986
No 85
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.84 E-value=0.94 Score=47.86 Aligned_cols=85 Identities=16% Similarity=0.298 Sum_probs=70.1
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-.|++..++..+.+|...+++++|.|. .|..+|.+|.. .| ..+.+|+++
T Consensus 142 ~~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~-------atVtv~hs~------------ 197 (287)
T PRK14176 142 GLVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLN-----RN-------ATVSVCHVF------------ 197 (287)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CC-------CEEEEEecc------------
Confidence 345678899999999999999999999999998 99999999865 24 346677642
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..|.++.+++++|+
T Consensus 198 ------------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk 227 (287)
T PRK14176 198 ------------TDDLKKYTLD--ADILVVATGVKHLIKADMVK 227 (287)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCccccCHHHcC
Confidence 1247788877 99999999999999999886
No 86
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=91.49 E-value=0.5 Score=48.18 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=33.9
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+|++.||+++|+|..|.-+|..|+.+ |+ ++|.++|.+
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~-----Gv------g~i~lvD~D 57 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAA-----GV------GNLTLLDFD 57 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCC
Confidence 468899999999999999999999874 87 789999997
No 87
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.45 E-value=0.56 Score=49.32 Aligned_cols=85 Identities=21% Similarity=0.367 Sum_probs=69.4
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-.|++.=++..+.+++..+++++|-+ .-|--+|.++... | ..+..++++
T Consensus 130 ~~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~-----~-------atVtv~hs~------------ 185 (279)
T PRK14178 130 GFAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNA-----D-------ATVTICHSK------------ 185 (279)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhC-----C-------CeeEEEecC------------
Confidence 44567888999999999999999999999999 8888888888642 4 356666653
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.++. +|++|+.-+.++.+|+++|+
T Consensus 186 ------------t~~L~~~~~~--ADIvI~Avgk~~lv~~~~vk 215 (279)
T PRK14178 186 ------------TENLKAELRQ--ADILVSAAGKAGFITPDMVK 215 (279)
T ss_pred ------------hhHHHHHHhh--CCEEEECCCcccccCHHHcC
Confidence 1358889987 99999999989999999984
No 88
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=91.40 E-value=0.37 Score=50.71 Aligned_cols=124 Identities=19% Similarity=0.270 Sum_probs=71.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc---CCCCCHHHHhc
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDAVK 402 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~---~~~~~L~e~v~ 402 (585)
.||.|+|+|..|.++|-.++.. |+ + +++++|..--+..++.-++. +...+.... ....++.+ ++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-----g~----~--~VvlvDi~~~l~~g~a~d~~-~~~~~~~~~~~i~~t~d~~~-~~ 68 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-----EL----A--DLVLLDVVEGIPQGKALDMY-EASPVGGFDTKVTGTNNYAD-TA 68 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-----CC----C--eEEEEeCCCChhHHHHHhhh-hhhhccCCCcEEEecCCHHH-hC
Confidence 4899999999999999987652 65 2 59999983222211100010 000010000 11246766 55
Q ss_pred ccCCcEEEeccCCC---C-C------CC----HHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhcccc--CcEEEecC
Q 007904 403 VIKPTILIGSSGVG---R-T------FT----KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFASG 466 (585)
Q Consensus 403 ~vkptvLIG~S~~~---g-~------Ft----~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~--Grai~AsG 466 (585)
+ .|++|=+.+.+ | . ++ +++++.|.+++...+|+-.|||. .+...-++++++ -+-+|++|
T Consensus 69 ~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~---di~t~~~~~~sg~~~~rviG~g 143 (305)
T TIGR01763 69 N--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL---DAMTYVAWQKSGFPKERVIGQA 143 (305)
T ss_pred C--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHEEEec
Confidence 4 78877444432 2 1 22 45667788899999999999998 344444555531 12366666
Q ss_pred C
Q 007904 467 S 467 (585)
Q Consensus 467 S 467 (585)
.
T Consensus 144 ~ 144 (305)
T TIGR01763 144 G 144 (305)
T ss_pred c
Confidence 3
No 89
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=91.21 E-value=0.93 Score=48.00 Aligned_cols=115 Identities=15% Similarity=0.149 Sum_probs=67.0
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc
Q 007904 311 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 390 (585)
Q Consensus 311 gll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~ 390 (585)
|.+++...... ...+++|+|+|..|..++..+... .++ ++++++++. ..+ .......+.+.
T Consensus 117 ~~laa~~la~~--~~~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~---a~~~a~~~~~~ 177 (326)
T TIGR02992 117 GAVAARHLARE--DSSVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK---AEALALQLSSL 177 (326)
T ss_pred HHHHHHHhCCC--CCcEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH---HHHHHHHHHhh
Confidence 34444444322 346999999999998888877543 254 689988873 222 11222222111
Q ss_pred ----cCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEecCCCC-CcCCCCHHH
Q 007904 391 ----HEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEE 452 (585)
Q Consensus 391 ----~~~~~~L~e~v~~vkptvLIG~S~~~-g~Ft~evi~~Ma~~~erPIIFaLSNPt-~~~E~tped 452 (585)
.....+++++++. .|++|-++... ..|+.++++ +.-.|.++.--+ .+-|+.++-
T Consensus 178 ~g~~v~~~~~~~~av~~--aDiVvtaT~s~~p~i~~~~l~------~g~~i~~vg~~~p~~rEld~~~ 237 (326)
T TIGR02992 178 LGIDVTAATDPRAAMSG--ADIIVTTTPSETPILHAEWLE------PGQHVTAMGSDAEHKNEIDPAV 237 (326)
T ss_pred cCceEEEeCCHHHHhcc--CCEEEEecCCCCcEecHHHcC------CCcEEEeeCCCCCCceecCHHH
Confidence 1123678899975 99999776432 356777765 222444444322 246777765
No 90
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=91.12 E-value=0.88 Score=43.84 Aligned_cols=115 Identities=13% Similarity=0.098 Sum_probs=73.6
Q ss_pred HHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCC
Q 007904 316 LKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVN 395 (585)
Q Consensus 316 ~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~ 395 (585)
.+..+..|.++++.|+|.|..|..+|+++... |+ +++.+|+..- +.. .+....-...
T Consensus 27 ~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~~----------~~~-~~~~~~~~~~ 83 (178)
T PF02826_consen 27 ERFPGRELRGKTVGIIGYGRIGRAVARRLKAF-----GM-------RVIGYDRSPK----------PEE-GADEFGVEYV 83 (178)
T ss_dssp TTTTBS-STTSEEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSCH----------HHH-HHHHTTEEES
T ss_pred cCCCccccCCCEEEEEEEcCCcCeEeeeeecC-----Cc-------eeEEecccCC----------hhh-hcccccceee
Confidence 34567889999999999999999999999753 64 6888888522 110 1111111235
Q ss_pred CHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhc-c-ccCcEE
Q 007904 396 NLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT-W-SKGRAI 462 (585)
Q Consensus 396 ~L~e~v~~vkptvLIG~S----~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~-w-t~Grai 462 (585)
+|.|+++. .|+++=.- ..-+.|+++.++.|. +.-++.-.|. .++--|+|+- + .+|+.-
T Consensus 84 ~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk---~ga~lvN~aR----G~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 84 SLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMK---PGAVLVNVAR----GELVDEDALLDALESGKIA 147 (178)
T ss_dssp SHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTST---TTEEEEESSS----GGGB-HHHHHHHHHTTSEE
T ss_pred ehhhhcch--hhhhhhhhccccccceeeeeeeeeccc---cceEEEeccc----hhhhhhhHHHHHHhhccCc
Confidence 89999987 89887432 224799999999996 5567765554 5555554432 2 345544
No 91
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.02 E-value=0.47 Score=48.83 Aligned_cols=122 Identities=21% Similarity=0.290 Sum_probs=64.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhch---h-hcc---c--------
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK---P-WAH---E-------- 390 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~---~-fa~---~-------- 390 (585)
+||.|+|+|..|.+||..+..+ | .+++++|++- . .+...+. + +.. .
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G-------~~V~~~d~~~----~---~~~~~~~~~~~~~~~~~~~g~~~~~~~ 62 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----G-------FQTTLVDIKQ----E---QLESAQQEIASIFEQGVARGKLTEAAR 62 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----C-------CcEEEEeCCH----H---HHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 5799999999999999988763 5 3588888741 1 1111110 0 000 0
Q ss_pred ------cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccCcEEEe
Q 007904 391 ------HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFA 464 (585)
Q Consensus 391 ------~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Grai~A 464 (585)
.....++.+++++ .|++|=+-...-...+++++.+.++.....|++ ||.++ ..+++.-++..-..=+.
T Consensus 63 ~~~~~~i~~~~~~~~~~~~--aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~-~~tSt---~~~~~l~~~~~~~~r~~ 136 (288)
T PRK09260 63 QAALARLSYSLDLKAAVAD--ADLVIEAVPEKLELKKAVFETADAHAPAECYIA-TNTST---MSPTEIASFTKRPERVI 136 (288)
T ss_pred HHHHhCeEEeCcHHHhhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEE-EcCCC---CCHHHHHhhcCCcccEE
Confidence 0112467777776 788874432221224455666666655554443 33322 34444444433222233
Q ss_pred cCCCCCcc
Q 007904 465 SGSPFDPF 472 (585)
Q Consensus 465 sGSPf~pv 472 (585)
...+|.||
T Consensus 137 g~h~~~Pv 144 (288)
T PRK09260 137 AMHFFNPV 144 (288)
T ss_pred EEecCCCc
Confidence 44566666
No 92
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=90.99 E-value=0.57 Score=51.98 Aligned_cols=130 Identities=17% Similarity=0.268 Sum_probs=76.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhh-cCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-cCC-----CCCHH
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQ-TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 398 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~-~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~~~-----~~~L~ 398 (585)
.||+|+||||+ -+-.|+..+.+. ..++ -+.|+|+|-+. +|-+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~----~~ei~L~DId~----~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~ 69 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFP----LRELVLYDIDA----ERQEKVAEAVKILFKENYPEIKFVYTTDPE 69 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCC----CCEEEEECCCH----HHHHHHHHHHHHHHHhhCCCeEEEEECCHH
Confidence 48999999996 555555555442 2342 37899999753 3321111111222221 112 25799
Q ss_pred HHhcccCCcEEE---------------------ecc-----CCCCCC--------CHHHHHHHHcCCCCcEEEecCCCCC
Q 007904 399 DAVKVIKPTILI---------------------GSS-----GVGRTF--------TKEVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 399 e~v~~vkptvLI---------------------G~S-----~~~g~F--------t~evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
||++. +|.+| |+- |+||.| -.++++.|.++|+.-+++-.|||.
T Consensus 70 eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~- 146 (437)
T cd05298 70 EAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPA- 146 (437)
T ss_pred HHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcH-
Confidence 99988 88777 221 333322 368889999999999999999999
Q ss_pred cCCCCHHHHhccccCcEEEecCCCCC
Q 007904 445 QSECTAEEAYTWSKGRAIFASGSPFD 470 (585)
Q Consensus 445 ~~E~tpeda~~wt~Grai~AsGSPf~ 470 (585)
..+|-.---.++.-|+|=-+-+|+.
T Consensus 147 -~~vt~~~~~~~~~~kviGlC~~~~~ 171 (437)
T cd05298 147 -AIVAEALRRLFPNARILNICDMPIA 171 (437)
T ss_pred -HHHHHHHHHHCCCCCEEEECCcHHH
Confidence 4443322111334455544555543
No 93
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=90.92 E-value=0.54 Score=48.49 Aligned_cols=50 Identities=30% Similarity=0.377 Sum_probs=38.6
Q ss_pred HHHHHHHHHH-hCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 309 LAGVVAALKL-IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 309 lAgll~A~r~-~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
..|++++++. .+..+++.+++|+|||.+|-+++..|.. .|+ .+++++++.
T Consensus 106 ~~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~-----~g~------~~V~v~~R~ 156 (278)
T PRK00258 106 GIGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLD-----LGV------AEITIVNRT 156 (278)
T ss_pred HHHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEEeCC
Confidence 3456777764 5678999999999999888888777764 365 679999885
No 94
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=90.89 E-value=0.7 Score=50.81 Aligned_cols=126 Identities=17% Similarity=0.237 Sum_probs=71.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc------CCCCCHHHH
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH------EPVNNLLDA 400 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~------~~~~~L~e~ 400 (585)
||.|+|||+.|.+.+- +..+.....+ +-.+++++|.+- ++.+.+...-..+.... ....++.++
T Consensus 2 KIaIIGaGs~G~a~a~--~~~i~~~~~~----~g~eV~L~Did~----e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~ea 71 (423)
T cd05297 2 KIAFIGAGSVVFTKNL--VGDLLKTPEL----SGSTIALMDIDE----ERLETVEILAKKIVEELGAPLKIEATTDRREA 71 (423)
T ss_pred eEEEECCChHHhHHHH--HHHHhcCCCC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 7999999998887653 1111110111 235899999752 21111111111111110 113578899
Q ss_pred hcccCCcEEEeccCCC---------------CCCC---------------------HHHHHHHHcCCCCcEEEecCCCCC
Q 007904 401 VKVIKPTILIGSSGVG---------------RTFT---------------------KEVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 401 v~~vkptvLIG~S~~~---------------g~Ft---------------------~evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
++. +|++|=.-..+ |+|. .++.+.|.++|++.+++=.|||.
T Consensus 72 l~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv- 148 (423)
T cd05297 72 LDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPM- 148 (423)
T ss_pred hcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChH-
Confidence 986 88877443321 1221 27778888889999999999998
Q ss_pred cCCCCHHHHhccccCcEEEecC-CC
Q 007904 445 QSECTAEEAYTWSKGRAIFASG-SP 468 (585)
Q Consensus 445 ~~E~tpeda~~wt~Grai~AsG-SP 468 (585)
..+| +-+++.++ .-++.+| +|
T Consensus 149 -~i~t-~~~~k~~~-~rviG~c~~~ 170 (423)
T cd05297 149 -AELT-WALNRYTP-IKTVGLCHGV 170 (423)
T ss_pred -HHHH-HHHHHhCC-CCEEEECCcH
Confidence 2222 23336665 5577777 44
No 95
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.85 E-value=0.41 Score=49.94 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=26.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+|.|+|+|..|.++|..+... |. +++++|+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~-----G~-------~V~v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA-----GH-------EVRLWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC-----CC-------eeEEEeCC
Confidence 3799999999999999998763 63 58888875
No 96
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.84 E-value=1.8 Score=45.24 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=26.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
..||.|+|+|..|.++|..+..+ | .+++++|+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-----G-------~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-----G-------HRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 35899999999999999999764 5 357777764
No 97
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=90.74 E-value=1.8 Score=46.31 Aligned_cols=100 Identities=22% Similarity=0.194 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHH------------------HhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEE
Q 007904 304 TASVVLAGVVAALK------------------LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 365 (585)
Q Consensus 304 TaaV~lAgll~A~r------------------~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~l 365 (585)
.|=-+++.+|+..| ..|..|.++++.|+|.|..|..+|+.+... |+ ++..
T Consensus 103 vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~af-----gm-------~v~~ 170 (324)
T COG0111 103 VAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAF-----GM-------KVIG 170 (324)
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhC-----CC-------eEEE
Confidence 34456888888887 567789999999999999999999999764 76 5788
Q ss_pred EcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHH
Q 007904 366 VDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMA 428 (585)
Q Consensus 366 vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi~~Ma 428 (585)
+|+. ..+. .. -........+|.|.+.. .|+|.-.- ..-|.++++-+..|.
T Consensus 171 ~d~~----~~~~--~~-----~~~~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i~~~~~a~MK 224 (324)
T COG0111 171 YDPY----SPRE--RA-----GVDGVVGVDSLDELLAE--ADILTLHLPLTPETRGLINAEELAKMK 224 (324)
T ss_pred ECCC----Cchh--hh-----ccccceecccHHHHHhh--CCEEEEcCCCCcchhcccCHHHHhhCC
Confidence 8873 1110 00 00111234679999987 99988542 223789999999994
No 98
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=90.71 E-value=3.1 Score=42.02 Aligned_cols=96 Identities=11% Similarity=0.221 Sum_probs=60.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 405 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vk 405 (585)
.||.|+|+|..|..+|..+.+. |. ...+++++|++. +.....+..| ...-..+..++++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~----~~~~v~v~~r~~-------~~~~~~~~~~--g~~~~~~~~~~~~~-- 62 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GV----PAKDIIVSDPSP-------EKRAALAEEY--GVRAATDNQEAAQE-- 62 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CC----CcceEEEEcCCH-------HHHHHHHHhc--CCeecCChHHHHhc--
Confidence 4799999999999999888653 53 125688887641 1121111111 01122466777764
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC
Q 007904 406 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 406 ptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
+|++| ++..+ ...+++++.+..+. ..+|..++|-++
T Consensus 63 advVi-l~v~~-~~~~~v~~~l~~~~-~~~vvs~~~gi~ 98 (267)
T PRK11880 63 ADVVV-LAVKP-QVMEEVLSELKGQL-DKLVVSIAAGVT 98 (267)
T ss_pred CCEEE-EEcCH-HHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence 78776 44433 45788888887654 458889999774
No 99
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.65 E-value=1 Score=47.99 Aligned_cols=110 Identities=21% Similarity=0.162 Sum_probs=69.0
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCc--ccCCCccCCchhchhhccccCCCCCHHHHhcc
Q 007904 327 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 403 (585)
Q Consensus 327 riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL--i~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~ 403 (585)
||.|.|| |..|..+|-.|+. .|+-.|.-...+.|+|.+.- ..++..-+|.+..-++.+...-..+..+++++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~ 76 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD 76 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC
Confidence 7999999 9999999987764 36633223347999998641 11111112333222332211111456788887
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCC-CCcEEEecCCCC
Q 007904 404 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFN-EKPLILALSNPT 443 (585)
Q Consensus 404 vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~-erPIIFaLSNPt 443 (585)
.|++|=+.+.+ |- .-+++.+.|.+++ +.-||+-.|||.
T Consensus 77 --aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 129 (323)
T cd00704 77 --VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA 129 (323)
T ss_pred --CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcH
Confidence 88888554443 31 1367888899995 999999999998
No 100
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=90.56 E-value=2.3 Score=46.47 Aligned_cols=116 Identities=15% Similarity=0.185 Sum_probs=82.4
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
..|=-+++.+++..|..|..|.+.++.|+|.|..|--+|+.+... |+ ++..+|+. +.+ ..
T Consensus 94 aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~-----G~-------~V~~~dp~------~~~--~~ 153 (378)
T PRK15438 94 AVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEAL-----GI-------KTLLCDPP------RAD--RG 153 (378)
T ss_pred HHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCc------ccc--cc
Confidence 445557899999999889999999999999999999999999653 75 57788853 111 00
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEe---ccC-----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHh
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIG---SSG-----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY 454 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG---~S~-----~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~ 454 (585)
......+|.|+++. .|+++= ++. .-++|+++.++.|. +..|++=.|. -+.--|+|+
T Consensus 154 -------~~~~~~~L~ell~~--sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk---~gailIN~aR----G~vVDe~AL 217 (378)
T PRK15438 154 -------DEGDFRSLDELVQE--ADILTFHTPLFKDGPYKTLHLADEKLIRSLK---PGAILINACR----GAVVDNTAL 217 (378)
T ss_pred -------cccccCCHHHHHhh--CCEEEEeCCCCCCcccccccccCHHHHhcCC---CCcEEEECCC----chhcCHHHH
Confidence 00123579999876 898872 122 23689999999996 6778886554 444445554
No 101
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.49 E-value=0.92 Score=47.02 Aligned_cols=32 Identities=34% Similarity=0.626 Sum_probs=26.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+||.|+|+|..|.+||..+... |. +++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEECC
Confidence 5799999999999999998653 53 58888863
No 102
>PRK06223 malate dehydrogenase; Reviewed
Probab=90.45 E-value=0.65 Score=48.19 Aligned_cols=119 Identities=19% Similarity=0.334 Sum_probs=72.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-----c----CCCCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-----H----EPVNN 396 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-----~----~~~~~ 396 (585)
.||.|+|||..|.++|..+.. .|+ + .++++|.+ .++ +......+.+. . ....+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~-----~~~----~--ev~L~D~~----~~~---~~~~~~dl~~~~~~~~~~~~i~~~~d 64 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL-----KEL----G--DVVLFDIV----EGV---PQGKALDIAEAAPVEGFDTKITGTND 64 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC----e--EEEEEECC----Cch---hHHHHHHHHhhhhhcCCCcEEEeCCC
Confidence 489999999999999998764 255 2 79999983 111 11111111110 0 01234
Q ss_pred HHHHhcccCCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccC---
Q 007904 397 LLDAVKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG--- 459 (585)
Q Consensus 397 L~e~v~~vkptvLIG~S~~~---g-----------~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~G--- 459 (585)
. +++++ .|++|=+.+.| | -.-+++++.|.+++...+++-.|||.. ....-+++++ |
T Consensus 65 ~-~~~~~--aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d---~~~~~~~~~s-~~~~ 137 (307)
T PRK06223 65 Y-EDIAG--SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVD---AMTYVALKES-GFPK 137 (307)
T ss_pred H-HHHCC--CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH---HHHHHHHHHh-CCCc
Confidence 5 45665 89888333322 2 123577888889999998888899981 2222334444 3
Q ss_pred cEEEecCCCC
Q 007904 460 RAIFASGSPF 469 (585)
Q Consensus 460 rai~AsGSPf 469 (585)
+-+|++|.-.
T Consensus 138 ~~viG~gt~l 147 (307)
T PRK06223 138 NRVIGMAGVL 147 (307)
T ss_pred ccEEEeCCCc
Confidence 5688888544
No 103
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.43 E-value=0.48 Score=43.31 Aligned_cols=37 Identities=35% Similarity=0.520 Sum_probs=31.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCc
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 371 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 371 (585)
++.||+++|+|+-|.-+|+.|+.. |+ ++|.++|.+=+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~-----Gv------~~i~lvD~d~v 37 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARS-----GV------GKITLVDDDIV 37 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHH-----TT------SEEEEEESSBB
T ss_pred CCCEEEEECcCHHHHHHHHHHHHh-----CC------CceeecCCcce
Confidence 478999999999999999999876 87 89999999733
No 104
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.25 E-value=1.5 Score=46.32 Aligned_cols=85 Identities=19% Similarity=0.286 Sum_probs=68.8
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-.|++.-++..|.+++..+++++|.+ ..|.-+|.||.. .| ..+.+|+++
T Consensus 136 ~~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~-----~~-------atVt~chs~------------ 191 (284)
T PRK14190 136 TFLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLN-----EN-------ATVTYCHSK------------ 191 (284)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEEeCC------------
Confidence 34567888999999999999999999999985 678888888864 24 346666542
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|.+.+.++.|++++|+
T Consensus 192 ------------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik 221 (284)
T PRK14190 192 ------------TKNLAELTKQ--ADILIVAVGKPKLITADMVK 221 (284)
T ss_pred ------------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1358888987 99999999999999999996
No 105
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=90.25 E-value=0.63 Score=48.94 Aligned_cols=48 Identities=38% Similarity=0.513 Sum_probs=38.8
Q ss_pred HHHHHHHHhC--CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 311 GVVAALKLIG--GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 311 gll~A~r~~g--~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
|++.+++-.+ ...+.+++|++|||-|+.+|+-.|.+. |. ++|++++|.
T Consensus 110 G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-----g~------~~i~V~NRt 159 (283)
T COG0169 110 GFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-----GA------KRITVVNRT 159 (283)
T ss_pred HHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEEeCC
Confidence 5677888766 455689999999999999998888764 75 789999883
No 106
>PRK15076 alpha-galactosidase; Provisional
Probab=90.25 E-value=0.74 Score=50.93 Aligned_cols=129 Identities=16% Similarity=0.215 Sum_probs=72.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCcc---CC-chhchhhccc--cCCCCCHHH
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD---SL-QHFKKPWAHE--HEPVNNLLD 399 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~---~l-~~~k~~fa~~--~~~~~~L~e 399 (585)
.||.|+|||+.| .+..++..+....++ +-..++|+|.+- +|.+ .+ .........+ -....++.+
T Consensus 2 ~KIaIIGaGsvg--~~~~~~~~i~~~~~l----~~~evvLvDid~----er~~~~~~l~~~~~~~~~~~~~i~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTV--FTKNLLGDILSVPAL----RDAEIALMDIDP----ERLEESEIVARKLAESLGASAKITATTDRRE 71 (431)
T ss_pred cEEEEECCCHHH--hHHHHHHHHhhCccC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 589999999984 343443333321244 335899999752 2211 01 0000000000 011257888
Q ss_pred HhcccCCcEEEeccCCCCC-------------------------------------CCHHHHHHHHcCCCCcEEEecCCC
Q 007904 400 AVKVIKPTILIGSSGVGRT-------------------------------------FTKEVIEAMASFNEKPLILALSNP 442 (585)
Q Consensus 400 ~v~~vkptvLIG~S~~~g~-------------------------------------Ft~evi~~Ma~~~erPIIFaLSNP 442 (585)
+++. +|++|=..+++|. .=.++++.|.++|+.-+|+-.|||
T Consensus 72 al~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP 149 (431)
T PRK15076 72 ALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNP 149 (431)
T ss_pred HhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCCh
Confidence 8887 7877754444421 125788889999999999999999
Q ss_pred CCcCCCCHHHHhccccCcEEEecC-CCCC
Q 007904 443 TSQSECTAEEAYTWSKGRAIFASG-SPFD 470 (585)
Q Consensus 443 t~~~E~tpeda~~wt~Grai~AsG-SPf~ 470 (585)
.. +..+-++.++ ..-+|.+| +|+.
T Consensus 150 ~d---ivt~~~~~~~-~~rviG~c~~~~~ 174 (431)
T PRK15076 150 MA---MNTWAMNRYP-GIKTVGLCHSVQG 174 (431)
T ss_pred HH---HHHHHHhcCC-CCCEEEECCCHHH
Confidence 82 1122223443 34577777 6643
No 107
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.19 E-value=0.37 Score=51.57 Aligned_cols=38 Identities=34% Similarity=0.534 Sum_probs=33.8
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+|++.||+|+|+|.-|.-+|..|..+ |+ .+|.++|.+
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~a-----Gv------g~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRA-----GV------GKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 578899999999999999999998764 87 789999996
No 108
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=89.82 E-value=0.94 Score=46.24 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=34.2
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+|++.||+++|+|.-|.-+|..|+.+ |+ ++|.++|.+
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAA-----GV------GTLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 478999999999999999999999875 87 799999997
No 109
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=89.59 E-value=11 Score=41.80 Aligned_cols=179 Identities=23% Similarity=0.233 Sum_probs=120.8
Q ss_pred CCChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCch--HHHHHHHHcCC-----Ceee------c----cCCCchHHHH
Q 007904 246 RATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHN--AFELLAKYGTT-----HLVF------N----DDIQGTASVV 308 (585)
Q Consensus 246 R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~--af~lL~ryr~~-----~~~F------n----DDiQGTaaV~ 308 (585)
..+-.|-.+|...|++++.+.-||+.-|-=+|++..- =--+.+.|+.- .++| . +----||-=+
T Consensus 111 ~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv 190 (411)
T COG0334 111 GLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYGV 190 (411)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCcccceeh
Confidence 3667788899999999999999999999999997522 12256777531 2222 1 1122233222
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhc
Q 007904 309 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 388 (585)
Q Consensus 309 lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa 388 (585)
.-+.-.|++..|.+|+..||.|-|-|.+|.=.|+.+.+. |- +=+-+=|++|-|++.. .|+..+....
T Consensus 191 ~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~-----GA------kvva~sds~g~i~~~~--Gld~~~l~~~ 257 (411)
T COG0334 191 FYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHEL-----GA------KVVAVSDSKGGIYDED--GLDVEALLEL 257 (411)
T ss_pred HHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHc-----CC------EEEEEEcCCCceecCC--CCCHHHHHHH
Confidence 333338888888889999999999999999888888652 63 5577779999888763 4553333211
Q ss_pred cc----------cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCC
Q 007904 389 HE----------HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTS 444 (585)
Q Consensus 389 ~~----------~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSN-Pt~ 444 (585)
++ .+.+.+ |.+-.+..||||=+.. .+.+|++-.+...+. +|.=-+| |+.
T Consensus 258 ~~~~~~v~~~~ga~~i~~--~e~~~~~cDIl~PcA~-~n~I~~~na~~l~ak----~V~EgAN~P~t 317 (411)
T COG0334 258 KERRGSVAEYAGAEYITN--EELLEVDCDILIPCAL-ENVITEDNADQLKAK----IVVEGANGPTT 317 (411)
T ss_pred hhhhhhHHhhcCceEccc--cccccccCcEEccccc-ccccchhhHHHhhhc----EEEeccCCCCC
Confidence 11 011112 3344567899997666 568999988888532 8888888 774
No 110
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.55 E-value=1.1 Score=47.27 Aligned_cols=89 Identities=18% Similarity=0.284 Sum_probs=68.2
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-+|++.=++..+.+++..++|++|.+ ..|.-+|.||... |- .+ ...+.+++++
T Consensus 135 ~~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~-----~~-~~--~AtVt~~hs~------------ 194 (286)
T PRK14184 135 GFRPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAP-----GK-FA--NATVTVCHSR------------ 194 (286)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCC-----cc-cC--CCEEEEEeCC------------
Confidence 34567888999999999999999999999986 5788888888641 10 00 1345566543
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.++. +|++|+..+.++.|++++|+
T Consensus 195 ------------t~~l~~~~~~--ADIVI~AvG~p~li~~~~vk 224 (286)
T PRK14184 195 ------------TPDLAEECRE--ADFLFVAIGRPRFVTADMVK 224 (286)
T ss_pred ------------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1358889987 99999999999999999994
No 111
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.39 E-value=2 Score=45.42 Aligned_cols=84 Identities=23% Similarity=0.358 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
-.-+|-+|++.=++..|.+++..+++|+|. |..|.-+|.+|.+. |. .+.++.++
T Consensus 137 ~~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s~------------- 191 (284)
T PRK14179 137 MIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHSR------------- 191 (284)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECCC-------------
Confidence 456778888999999999999999999999 99999999999763 53 34544321
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-.-+.++.+++++++
T Consensus 192 -----------t~~l~~~~~~--ADIVI~avg~~~~v~~~~ik 221 (284)
T PRK14179 192 -----------TRNLAEVARK--ADILVVAIGRGHFVTKEFVK 221 (284)
T ss_pred -----------CCCHHHHHhh--CCEEEEecCccccCCHHHcc
Confidence 1258888987 99999999999999998854
No 112
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.31 E-value=1.5 Score=46.29 Aligned_cols=85 Identities=18% Similarity=0.218 Sum_probs=68.8
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-+|++.=++..+.+++.+++|++|-+ ..|.-+|.||.. .| ..+.+|+++
T Consensus 135 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~-----~~-------AtVti~hs~------------ 190 (281)
T PRK14183 135 GFVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLN-----AN-------ATVDICHIF------------ 190 (281)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC------------
Confidence 44567888999999999999999999999998 889999999864 24 234555442
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.|+.++|+
T Consensus 191 ------------T~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk 220 (281)
T PRK14183 191 ------------TKDLKAHTKK--ADIVIVGVGKPNLITEDMVK 220 (281)
T ss_pred ------------CcCHHHHHhh--CCEEEEecCcccccCHHHcC
Confidence 1236778887 99999999999999999997
No 113
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=89.14 E-value=0.39 Score=45.31 Aligned_cols=85 Identities=21% Similarity=0.337 Sum_probs=51.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhch--hhccc---cCC---CCCHH
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK--PWAHE---HEP---VNNLL 398 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~--~fa~~---~~~---~~~L~ 398 (585)
||.|+|||+.|+.+|..+... | .++.|.+++.-..+ .+...+. .|... .+. ..+|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-----g-------~~V~l~~~~~~~~~----~i~~~~~n~~~~~~~~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-----G-------HEVTLWGRDEEQIE----EINETRQNPKYLPGIKLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-----T-------EEEEEETSCHHHHH----HHHHHTSETTTSTTSBEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHHc-----C-------CEEEEEeccHHHHH----HHHHhCCCCCCCCCcccCcccccccCHH
Confidence 799999999999999998763 5 56777777531111 1111111 11110 111 25799
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC
Q 007904 399 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN 431 (585)
Q Consensus 399 e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~ 431 (585)
+++++ +|++| +.. |--+-+++++.++.+-
T Consensus 65 ~a~~~--ad~Ii-iav-Ps~~~~~~~~~l~~~l 93 (157)
T PF01210_consen 65 EALED--ADIII-IAV-PSQAHREVLEQLAPYL 93 (157)
T ss_dssp HHHTT---SEEE-E-S--GGGHHHHHHHHTTTS
T ss_pred HHhCc--ccEEE-ecc-cHHHHHHHHHHHhhcc
Confidence 99986 77766 333 2245789999998754
No 114
>PRK14851 hypothetical protein; Provisional
Probab=88.86 E-value=1.5 Score=51.46 Aligned_cols=123 Identities=14% Similarity=0.098 Sum_probs=79.4
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCc-------cCCchhchhhccc---
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK-------DSLQHFKKPWAHE--- 390 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~-------~~l~~~k~~fa~~--- 390 (585)
++|++.||+|+|+|..|.-+|..|+.+ |+ .+|.++|-+=+-..+-. +++-..|..-+..
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~-----GV------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~ 107 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRT-----GI------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQAL 107 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHh-----CC------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHH
Confidence 678999999999999999999988875 87 89999998633221110 0111122222211
Q ss_pred --cC---------CC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC----------CCCCcCC
Q 007904 391 --HE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS----------NPTSQSE 447 (585)
Q Consensus 391 --~~---------~~--~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLS----------NPt~~~E 447 (585)
.+ .+ .++.+.+++ .|++|-+..-...-++..|...+..+..|+|++-. +|. .
T Consensus 108 ~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~---~ 182 (679)
T PRK14851 108 SINPFLEITPFPAGINADNMDAFLDG--VDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQ---G 182 (679)
T ss_pred HhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCC---C
Confidence 01 11 246666765 89998555321111345677788888999998754 665 5
Q ss_pred CCHHHHhccccC
Q 007904 448 CTAEEAYTWSKG 459 (585)
Q Consensus 448 ~tpeda~~wt~G 459 (585)
...++.|.+.++
T Consensus 183 ~~~~~~~~~~~~ 194 (679)
T PRK14851 183 MGFDDYFNIGGK 194 (679)
T ss_pred CCHhHhccCCCC
Confidence 778888888777
No 115
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.76 E-value=2.8 Score=44.70 Aligned_cols=134 Identities=19% Similarity=0.204 Sum_probs=76.6
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcc--cCCCccCCchhchhhccccCCCCCHHHHhc
Q 007904 326 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 402 (585)
Q Consensus 326 ~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi--~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~ 402 (585)
-||+|.|| |..|..+|..|+. .|+-..+....++++|.+.-. ..+..-++.+..-++..+.....++.++++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~-----~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~ 77 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAK-----GDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFK 77 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHh-----CcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhC
Confidence 36999999 9999999988775 254110111379999985411 111100122111112111111257888898
Q ss_pred ccCCcEEEeccCCCCC--CC------------HHHHHHHHcCC-CCcEEEecCCCCCcCCCCHHHHhccccC--cEEEec
Q 007904 403 VIKPTILIGSSGVGRT--FT------------KEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWSKG--RAIFAS 465 (585)
Q Consensus 403 ~vkptvLIG~S~~~g~--Ft------------~evi~~Ma~~~-erPIIFaLSNPt~~~E~tpeda~~wt~G--rai~As 465 (585)
+ +|++|=+.+.+.. .| +++.+.|.+++ ..-||+-.|||. ....--+++++.| +-.|.|
T Consensus 78 ~--aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~~~~~~~~~ig~ 152 (325)
T cd01336 78 D--VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPA---NTNALILLKYAPSIPKENFTA 152 (325)
T ss_pred C--CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcH---HHHHHHHHHHcCCCCHHHEEe
Confidence 6 9998855555421 23 56778888886 699999999997 3334444454322 112555
Q ss_pred CCCC
Q 007904 466 GSPF 469 (585)
Q Consensus 466 GSPf 469 (585)
|+=.
T Consensus 153 gt~L 156 (325)
T cd01336 153 LTRL 156 (325)
T ss_pred eehH
Confidence 5433
No 116
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=88.72 E-value=0.5 Score=46.92 Aligned_cols=107 Identities=21% Similarity=0.268 Sum_probs=65.9
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccC-C-CCCHH
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE-P-VNNLL 398 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~-~-~~~L~ 398 (585)
.+|++.||+|+|+|..|.+||..|+.+ |+ +++.++|.+=+ .. .+|..+ ..+..+-. . ...+.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~v-e~---sNL~Rq-~~~~~~iG~~Ka~~~~ 80 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARA-----GI------GKLILVDFDVV-EP---SNLNRQ-QYKASQVGEPKTEALK 80 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCCEE-cc---cccccc-cCChhhCCCHHHHHHH
Confidence 468899999999999999999999874 87 78999999732 22 135442 21211110 0 12466
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE-ecCCCCCcCC
Q 007904 399 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL-ALSNPTSQSE 447 (585)
Q Consensus 399 e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIF-aLSNPt~~~E 447 (585)
+.++.+.|++-|-. ...-++++-+...-+ +--+|+ +.-||..+.+
T Consensus 81 ~~l~~inp~~~i~~--~~~~i~~~~~~~~~~--~~DlVi~a~Dn~~~k~~ 126 (200)
T TIGR02354 81 ENISEINPYTEIEA--YDEKITEENIDKFFK--DADIVCEAFDNAEAKAM 126 (200)
T ss_pred HHHHHHCCCCEEEE--eeeeCCHhHHHHHhc--CCCEEEECCCCHHHHHH
Confidence 77777788765432 233467666655433 233555 5566665544
No 117
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=88.69 E-value=1.1 Score=48.32 Aligned_cols=101 Identities=21% Similarity=0.226 Sum_probs=62.7
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch-----------hchhhcc
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-----------FKKPWAH 389 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~-----------~k~~fa~ 389 (585)
.+|++.||+|+|+|..|.-+|..|+.+ |+ ++|.++|.+= |..+ +|+. .|..-+.
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~-----Gv------g~i~lvD~D~-ve~s---NL~Rq~l~~~~diG~~Ka~~a~ 88 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGA-----GV------GHITIIDDDT-VDLS---NLHRQVIHSTAGVGQPKAESAR 88 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCE-Eccc---ccccCcccChhHCCChHHHHHH
Confidence 568899999999999999999998764 87 7899999973 2221 1221 1111111
Q ss_pred c-----cCC---------C--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 007904 390 E-----HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 440 (585)
Q Consensus 390 ~-----~~~---------~--~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLS 440 (585)
+ .+. . .++.+.++. .|++|-++.. .=+..++..++.....|.|++-+
T Consensus 89 ~~l~~~np~v~v~~~~~~i~~~~~~~~~~~--~DvVvd~~d~--~~~r~~~n~~c~~~~ip~v~~~~ 151 (355)
T PRK05597 89 EAMLALNPDVKVTVSVRRLTWSNALDELRD--ADVILDGSDN--FDTRHLASWAAARLGIPHVWASI 151 (355)
T ss_pred HHHHHHCCCcEEEEEEeecCHHHHHHHHhC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEEE
Confidence 0 000 0 123445554 6777766542 22555677777777788887654
No 118
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=88.64 E-value=2.6 Score=48.08 Aligned_cols=162 Identities=22% Similarity=0.226 Sum_probs=102.4
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcc--cCCCccCCchhchhhccccCCCCCHHHHh
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAV 401 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi--~~~r~~~l~~~k~~fa~~~~~~~~L~e~v 401 (585)
.+--++|+|.|..|+|||.-+.. .|+ ++.||+++-+= |.+|..+|=+.-.+|+.. -+.+=..|++
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~-----RGl-------~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~-~e~~lvrEal 77 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAG-----RGL-------KVALVEKGDLASGTSSRSTKLIHGGLRYLEQ-YEFSLVREAL 77 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHh-----CCC-------eEEEEecCcccCcccCccccCccchhhhhhh-cchHHHHHHH
Confidence 55679999999999999998865 387 47889987765 344444455545556543 1222234555
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcCC--CCcEEEecCCCCCcCCCCHHHHhccccCcEEEecCCCCCcceeCCeee
Q 007904 402 KVIKPTILIGSSGVGRTFTKEVIEAMASFN--EKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVF 479 (585)
Q Consensus 402 ~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~--erPIIFaLSNPt~~~E~tpeda~~wt~Grai~AsGSPf~pv~~~G~~~ 479 (585)
.. .+++..+|-|+ +.|.+||..+=+
T Consensus 78 ~E-----------------r~vL~~~APH~v~p~~~~lp~~~~~------------------------------------ 104 (532)
T COG0578 78 AE-----------------REVLLRIAPHLVEPLPFLLPHLPGL------------------------------------ 104 (532)
T ss_pred HH-----------------HHHHHHhCccccccCcCeEeccCCc------------------------------------
Confidence 43 47788888665 344566554320
Q ss_pred CcCCCcccccchhhhHHHHHhCC-cccC--HHHHHHHHHHHHcccCccccCCCcccCCCCCchhhHHHHHHHHHHHHHHc
Q 007904 480 VPGQANNAYIFPGFGLGLVISGA-IRVH--DDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYEL 556 (585)
Q Consensus 480 ~p~Q~NN~yiFPGiglG~l~~~a-~~It--d~m~~aAA~aLA~~v~~~~~~~~~l~P~i~~irevs~~VA~aVa~~A~~~ 556 (585)
---.+++.|+.+...+++. +..+ ..+..+++..+.-.+.++.+..+-.||.-.- .+ .+...+|++.|.+.
T Consensus 105 ----~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~v-dd--aRLv~~~a~~A~~~ 177 (532)
T COG0578 105 ----RDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVV-DD--ARLVAANARDAAEH 177 (532)
T ss_pred ----ccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEcccee-ch--HHHHHHHHHHHHhc
Confidence 0125678899999999993 3332 2222335556666666666655788886543 22 26667888888888
Q ss_pred CC
Q 007904 557 GV 558 (585)
Q Consensus 557 Gv 558 (585)
|-
T Consensus 178 Ga 179 (532)
T COG0578 178 GA 179 (532)
T ss_pred cc
Confidence 83
No 119
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.62 E-value=2.7 Score=44.31 Aligned_cols=84 Identities=18% Similarity=0.288 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
-.-+|-+|++.=++..+.+|+.++++++|-+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 137 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~-------AtVt~chs~------------- 191 (278)
T PRK14172 137 FLPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLN-----EN-------ATVTICHSK------------- 191 (278)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC-------------
Confidence 3567888999999999999999999999986 578888888864 24 346667653
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.|++++|+
T Consensus 192 -----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (278)
T PRK14172 192 -----------TKNLKEVCKK--ADILVVAIGRPKFIDEEYVK 221 (278)
T ss_pred -----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1257788887 99999999999999999997
No 120
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.43 E-value=2.7 Score=44.43 Aligned_cols=83 Identities=23% Similarity=0.302 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchh
Q 007904 305 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 383 (585)
Q Consensus 305 aaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 383 (585)
.-+|-.|++.=++..+.+++.+++|++|.+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 139 ~PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------atVt~chs~-------------- 192 (284)
T PRK14177 139 LPCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTE-----MN-------ATVTLCHSK-------------- 192 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 455677888888899999999999999986 578888888864 24 346677653
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 384 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 384 k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|...+.++.++.++|+
T Consensus 193 ----------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik 222 (284)
T PRK14177 193 ----------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWIS 222 (284)
T ss_pred ----------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcC
Confidence 1247788887 99999999999999999997
No 121
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=88.22 E-value=9.8 Score=41.95 Aligned_cols=95 Identities=24% Similarity=0.397 Sum_probs=54.8
Q ss_pred eeeEEeccCCCchhcccCccccccccCCCChhhhHHHHHHHH---------HHHHHhc-CCceeeeeecCCCchHHHHHH
Q 007904 219 CLPITVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFM---------SAVKQNY-GEKVLIQFEDFANHNAFELLA 288 (585)
Q Consensus 219 ~lPV~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv---------~av~~~f-Gp~~lIq~EDf~~~~af~lL~ 288 (585)
.+|.+.+.-..=+++.+||-+. +||+.+..+++ ..+.+.+ |.+..+-.||+....+|++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~f~---------~~~~~~~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~-- 91 (397)
T PRK04346 23 LMPALEELEEAYEKAKNDPEFQ---------AELDYLLKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKI-- 91 (397)
T ss_pred HHHHHHHHHHHHHHHhcCHHHH---------HHHHHHHHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHH--
Confidence 3444444444445677777542 45555555543 2355566 4677788888877777754
Q ss_pred HHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEE-eCcchHHHHHHHHHHH
Q 007904 289 KYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLF-LGAGEAGTGIAELIAL 346 (585)
Q Consensus 289 ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~-~GAGsAg~GIA~ll~~ 346 (585)
| .++.-++.|. ..|+ .+++. -|||..|+++|-....
T Consensus 92 r-----------------~al~~~l~A~-~~Gk----~~vIaetgaGnhG~A~A~~aa~ 128 (397)
T PRK04346 92 N-----------------NVLGQALLAK-RMGK----KRIIAETGAGQHGVATATAAAL 128 (397)
T ss_pred H-----------------HHHHHHHHHH-HcCC----CeEEEecCcHHHHHHHHHHHHH
Confidence 1 1233333333 3343 35666 6999988888776544
No 122
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=88.18 E-value=2.7 Score=47.74 Aligned_cols=212 Identities=16% Similarity=0.225 Sum_probs=105.9
Q ss_pred CeeEEEEeeCcccccCCCCC--CcccccchhhHHHHHHhcCCCCCceeeEEeccCCCc----hhcccCccccccccCCCC
Q 007904 175 SIQVIVVTDGERILGLGDLG--CQGMGIPVGKLALYTALGGIRPSACLPITVDVGTNN----EQLLKDEFYIGLRQRRAT 248 (585)
Q Consensus 175 ~v~viVVTDG~rILGLGDlG--~~GmgI~iGKl~LY~a~gGI~P~~~lPV~LDvGTnn----e~Ll~DP~YlG~r~~R~~ 248 (585)
..+|+|=++.+.-.|.-|-= ..|..|.-. ..+| . . .|+|-|.... +.|.++-.++|+-|+--.
T Consensus 29 G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~-~~~~-~---a------diIlkV~~P~~~e~~~l~~g~tli~~l~p~~n 97 (511)
T TIGR00561 29 GFDVLVETGAGAKASFADRAFESAGAGIVDG-TLFW-Q---S------DIILKVNAPSDAEIAELPAGKALVSFIWPAQN 97 (511)
T ss_pred CCEEEEECCCCcCCCcCHHHHHHcCCEEecc-cchh-c---C------CEEEEeCCCCHHHHHhcCCCCEEEEEcCccCC
Confidence 46777777755555666621 113233211 2222 1 1 2455444332 445666777777776432
Q ss_pred hhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHHHHHHHHcCCCeeec--cCCCchHHHHHHHHHHHHHHhC-----C
Q 007904 249 GQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN--DDIQGTASVVLAGVVAALKLIG-----G 321 (585)
Q Consensus 249 g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~lL~ryr~~~~~Fn--DDiQGTaaV~lAgll~A~r~~g-----~ 321 (585)
. |.++++.++ .-++|-+|.+-. + +|- .+..+|. .-|.|-.+|..|+-.-.-..+| .
T Consensus 98 ----~----~ll~~l~~k--~it~ia~E~vpr-----i-sra-q~~d~lssma~iAGy~Avi~Aa~~lgr~~~g~~taag 160 (511)
T TIGR00561 98 ----P----ELMEKLAAK--NITVLAMDAVPR-----I-SRA-QKLDALSSMANIAGYRAIIEAAHEFGRFFTGQITAAG 160 (511)
T ss_pred ----H----HHHHHHHHc--CCEEEEeecccc-----c-ccC-CccCcchhhHHHHHHHHHHHHHHHhhhhcCCceecCC
Confidence 2 333333332 234566775531 0 111 1222222 3455666665553332222222 1
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch------------hchhhcc
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH------------FKKPWAH 389 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~------------~k~~fa~ 389 (585)
.....|++|+|+|.+|+..+..+... |. ++.++|.+.-.. .+...+.. ...-|++
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~l-----GA-------~V~v~d~~~~rl-e~a~~lGa~~v~v~~~e~g~~~~gYa~ 227 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSL-----GA-------IVRAFDTRPEVK-EQVQSMGAEFLELDFKEEGGSGDGYAK 227 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCHHHH-HHHHHcCCeEEecccccccccccccee
Confidence 34568999999999999987777552 52 377777764211 00000100 0011221
Q ss_pred ccCCC------CCHHHHhcccCCcEEEeccCCCC-----CCCHHHHHHHHc
Q 007904 390 EHEPV------NNLLDAVKVIKPTILIGSSGVGR-----TFTKEVIEAMAS 429 (585)
Q Consensus 390 ~~~~~------~~L~e~v~~vkptvLIG~S~~~g-----~Ft~evi~~Ma~ 429 (585)
...+. .-+.|.++. .|++|++.-++| +.|+++++.|..
T Consensus 228 ~~s~~~~~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~MKp 276 (511)
T TIGR00561 228 VMSEEFIAAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDSMKA 276 (511)
T ss_pred ecCHHHHHHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhhCCC
Confidence 11000 114455554 999999984333 589999999973
No 123
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.14 E-value=3.3 Score=44.04 Aligned_cols=102 Identities=25% Similarity=0.333 Sum_probs=67.3
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccC--CCCCHHHHhcc
Q 007904 327 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE--PVNNLLDAVKV 403 (585)
Q Consensus 327 riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~--~~~~L~e~v~~ 403 (585)
||.|+|| |..|..+|-+|+. .|+ ...+.|+|.+ + ..+-.-+|.+.. .+.+-.. ...++.+.+++
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~-----~~elvLiDi~-~-a~g~alDL~~~~-~~~~i~~~~~~~~~y~~~~d 68 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPL-----VSELALYDIV-N-TPGVAADLSHIN-TPAKVTGYLGPEELKKALKG 68 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEEecC-c-cceeehHhHhCC-CcceEEEecCCCchHHhcCC
Confidence 8999999 9999999887743 366 3679999998 3 222211243322 1111111 11346677877
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 404 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 404 vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.|++|=+++.+ |- .-+++++.+.++++..+|+-.|||.
T Consensus 69 --aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv 120 (310)
T cd01337 69 --ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120 (310)
T ss_pred --CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 89888555543 31 2356778888999999999999998
No 124
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=88.09 E-value=1.1 Score=46.61 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=40.7
Q ss_pred CeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 294 HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 294 ~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+.=||-|- .|++.+++..|... +.+++++|||-|+-+|+-.|.+ .|. ++|+++++.
T Consensus 100 l~G~NTD~--------~Gf~~~L~~~~~~~-~~~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 155 (272)
T PRK12550 100 LKAYNTDY--------IAIAKLLASYQVPP-DLVVALRGSGGMAKAVAAALRD-----AGF------TDGTIVARN 155 (272)
T ss_pred EEEEecCH--------HHHHHHHHhcCCCC-CCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 44556563 35667777666654 4699999999999888877754 375 679999884
No 125
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=88.02 E-value=0.92 Score=44.95 Aligned_cols=109 Identities=17% Similarity=0.306 Sum_probs=68.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-cCC-----CCCHHHH
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLLDA 400 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~~~-----~~~L~e~ 400 (585)
||+|+||||+-. ..++...+.+.+.++ ...|+|+|.+ ..|-+.....-+.+++. ..+ ..++.||
T Consensus 1 KI~iIGaGS~~~--~~~l~~~l~~~~~l~----~~ei~L~Did----~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eA 70 (183)
T PF02056_consen 1 KITIIGAGSTYF--PLLLLGDLLRTEELS----GSEIVLMDID----EERLEIVERLARRMVEEAGADLKVEATTDRREA 70 (183)
T ss_dssp EEEEETTTSCCH--HHHHHHHHHCTTTST----EEEEEEE-SC----HHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHH
T ss_pred CEEEECCchHhh--HHHHHHHHhcCccCC----CcEEEEEcCC----HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 799999999854 455555555544553 4689999985 23311111222233322 112 2589999
Q ss_pred hcccCCcEEE---------------------eccC-------CCCCCC--------HHHHHHHHcCCCCcEEEecCCCCC
Q 007904 401 VKVIKPTILI---------------------GSSG-------VGRTFT--------KEVIEAMASFNEKPLILALSNPTS 444 (585)
Q Consensus 401 v~~vkptvLI---------------------G~S~-------~~g~Ft--------~evi~~Ma~~~erPIIFaLSNPt~ 444 (585)
++. +|.+| |+-+ +||.|. .|+.+.|.++|+.--||=.+||.
T Consensus 71 l~g--ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~- 147 (183)
T PF02056_consen 71 LEG--ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPM- 147 (183)
T ss_dssp HTT--ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSH-
T ss_pred hCC--CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChH-
Confidence 997 89888 3322 233332 58899999999999999999999
Q ss_pred cCCCC
Q 007904 445 QSECT 449 (585)
Q Consensus 445 ~~E~t 449 (585)
+++|
T Consensus 148 -~~vt 151 (183)
T PF02056_consen 148 -GIVT 151 (183)
T ss_dssp -HHHH
T ss_pred -HHHH
Confidence 5554
No 126
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=87.85 E-value=2.1 Score=42.53 Aligned_cols=96 Identities=16% Similarity=0.170 Sum_probs=59.4
Q ss_pred eEEEeC-cchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhc---cc-c----CCCCCH
Q 007904 327 RFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA---HE-H----EPVNNL 397 (585)
Q Consensus 327 riv~~G-AGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa---~~-~----~~~~~L 397 (585)
||.|+| +|..|..+|..+.+. | .+++++|+. .++ +......+. .. . ....+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-----G-------~~V~v~~r~----~~~---~~~l~~~~~~~~~~~g~~~~~~~~~~ 62 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-----G-------NKIIIGSRD----LEK---AEEAAAKALEELGHGGSDIKVTGADN 62 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-----C-------CEEEEEEcC----HHH---HHHHHHHHHhhccccCCCceEEEeCh
Confidence 799997 899999999998753 5 467777763 111 211111110 00 0 011356
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCc
Q 007904 398 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 445 (585)
Q Consensus 398 ~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~ 445 (585)
.|+++. +|++| ++..+ ...+++++.++..-...+|+.++||...
T Consensus 63 ~ea~~~--aDvVi-lavp~-~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 63 AEAAKR--ADVVI-LAVPW-DHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred HHHHhc--CCEEE-EECCH-HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 778875 78776 44433 3457888888654445799999999853
No 127
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=87.81 E-value=2.9 Score=40.59 Aligned_cols=85 Identities=19% Similarity=0.329 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+.--+|-.|++.-++..+.+++..+++++|.+. .|.-+|.||... |. .+.+++++
T Consensus 14 ~~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~-----~a-------tVt~~h~~------------ 69 (160)
T PF02882_consen 14 GFVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNK-----GA-------TVTICHSK------------ 69 (160)
T ss_dssp SS--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHT-----T--------EEEEE-TT------------
T ss_pred CCcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhC-----CC-------eEEeccCC------------
Confidence 334578888999999999999999999999984 898888888652 42 35555543
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.++. +|++|-..+.++.++.++|+
T Consensus 70 ------------T~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik 99 (160)
T PF02882_consen 70 ------------TKNLQEITRR--ADIVVSAVGKPNLIKADWIK 99 (160)
T ss_dssp ------------SSSHHHHHTT--SSEEEE-SSSTT-B-GGGS-
T ss_pred ------------CCcccceeee--ccEEeeeecccccccccccc
Confidence 1357777876 99999999999999999987
No 128
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.73 E-value=1.8 Score=45.93 Aligned_cols=87 Identities=16% Similarity=0.269 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchh
Q 007904 305 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 383 (585)
Q Consensus 305 aaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 383 (585)
.-+|-.|++.=++..+.+++..++||+|.+ ..|.-+|.||.+.+.++ | ..+.++.++
T Consensus 139 ~PcTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~-~-------atVt~~hs~-------------- 196 (295)
T PRK14174 139 VSCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKES-N-------CTVTICHSA-------------- 196 (295)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccC-C-------CEEEEEeCC--------------
Confidence 456777889999999999999999999986 57888888886532211 2 245555432
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 384 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 384 k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|+..+.++.|++++|+
T Consensus 197 ----------t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk 226 (295)
T PRK14174 197 ----------TKDIPSYTRQ--ADILIAAIGKARFITADMVK 226 (295)
T ss_pred ----------chhHHHHHHh--CCEEEEecCccCccCHHHcC
Confidence 1348888987 99999999999999999995
No 129
>PRK05442 malate dehydrogenase; Provisional
Probab=87.60 E-value=2 Score=45.93 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=65.1
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcc--cCCCccCCchhchhhccccCCCCCHHHHhcc
Q 007904 327 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 403 (585)
Q Consensus 327 riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi--~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~ 403 (585)
||.|+|| |..|..+|-.|+.. |+-...-...|.|+|.+.=. .++-.-+|.+...++-....-..+..+.+++
T Consensus 6 KV~IiGaaG~VG~~~a~~l~~~-----~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~d 80 (326)
T PRK05442 6 RVAVTGAAGQIGYSLLFRIASG-----DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKD 80 (326)
T ss_pred EEEEECCCcHHHHHHHHHHHhh-----hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCC
Confidence 8999998 99999998877653 44110001279999985311 1111112333222332211111355677877
Q ss_pred cCCcEEEeccCC---CC-----------CCCHHHHHHHHcCC-CCcEEEecCCCC
Q 007904 404 IKPTILIGSSGV---GR-----------TFTKEVIEAMASFN-EKPLILALSNPT 443 (585)
Q Consensus 404 vkptvLIG~S~~---~g-----------~Ft~evi~~Ma~~~-erPIIFaLSNPt 443 (585)
.|++|=+.+. +| ..=+++.+.+.+++ ...||+-.|||.
T Consensus 81 --aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv 133 (326)
T PRK05442 81 --ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPA 133 (326)
T ss_pred --CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCch
Confidence 8988844443 33 12346677888867 699999999998
No 130
>PRK07574 formate dehydrogenase; Provisional
Probab=87.58 E-value=5.9 Score=43.48 Aligned_cols=144 Identities=14% Similarity=0.121 Sum_probs=89.3
Q ss_pred CCCeeeccCCCc---hHHHHHHHHHHHHHHh--------------------CCCcccceEEEeCcchHHHHHHHHHHHHH
Q 007904 292 TTHLVFNDDIQG---TASVVLAGVVAALKLI--------------------GGTLAEHRFLFLGAGEAGTGIAELIALEI 348 (585)
Q Consensus 292 ~~~~~FnDDiQG---TaaV~lAgll~A~r~~--------------------g~~l~d~riv~~GAGsAg~GIA~ll~~~~ 348 (585)
..+.+.|-.--. .|=-+++-+|+.+|-. +..|.+++|.|+|.|..|..+|+.+...
T Consensus 136 ~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~f- 214 (385)
T PRK07574 136 HGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPF- 214 (385)
T ss_pred CCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhC-
Confidence 456666653322 3334677778776621 3458899999999999999999998753
Q ss_pred HhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHH
Q 007904 349 SKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVI 424 (585)
Q Consensus 349 ~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~Ft~evi 424 (585)
|+ +++.+|+...- . + . ...+ ......+|.|+++. .|+++=.-- .-++|+++.+
T Consensus 215 ----G~-------~V~~~dr~~~~---~-~-~---~~~~--g~~~~~~l~ell~~--aDvV~l~lPlt~~T~~li~~~~l 271 (385)
T PRK07574 215 ----DV-------KLHYTDRHRLP---E-E-V---EQEL--GLTYHVSFDSLVSV--CDVVTIHCPLHPETEHLFDADVL 271 (385)
T ss_pred ----CC-------EEEEECCCCCc---h-h-h---Hhhc--CceecCCHHHHhhc--CCEEEEcCCCCHHHHHHhCHHHH
Confidence 65 57888875320 0 0 0 0011 11113579999987 898873321 1368999999
Q ss_pred HHHHcCCCCcEEEecCCCCCcCCCCHHHHhc--cccCcEEEecC
Q 007904 425 EAMASFNEKPLILALSNPTSQSECTAEEAYT--WSKGRAIFASG 466 (585)
Q Consensus 425 ~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~--wt~Grai~AsG 466 (585)
..|. +..++.=.|. .++.-++|+. ...|+.-.|..
T Consensus 272 ~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~i~GAaL 308 (385)
T PRK07574 272 SRMK---RGSYLVNTAR----GKIVDRDAVVRALESGHLAGYAG 308 (385)
T ss_pred hcCC---CCcEEEECCC----CchhhHHHHHHHHHhCCccEEEE
Confidence 9996 5667776654 4454454442 13566544443
No 131
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=87.49 E-value=1.5 Score=47.80 Aligned_cols=103 Identities=17% Similarity=0.219 Sum_probs=62.2
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCc--------cCCchhchhhccc--
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--------DSLQHFKKPWAHE-- 390 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~--------~~l~~~k~~fa~~-- 390 (585)
++|++.||+++|+|..|.-+|..|+.+ |+ ++|.++|.+= |..+.- +++-..|..-+++
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~-----Gv------g~i~lvD~D~-ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l 105 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAA-----GV------GTLGIVEFDV-VDESNLQRQVIHGQSDVGRSKAQSARDSI 105 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCCE-ecCcccccccccChhcCCChHHHHHHHHH
Confidence 678899999999999999999999875 87 7899999862 221110 0111111111110
Q ss_pred ---cC---------CC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEec
Q 007904 391 ---HE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 439 (585)
Q Consensus 391 ---~~---------~~--~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaL 439 (585)
.+ .. .++.+.++. .|++|-++.-. =++-++-.++..+..|.|++-
T Consensus 106 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~D~Vvd~~d~~--~~r~~ln~~~~~~~~p~v~~~ 164 (392)
T PRK07878 106 VEINPLVNVRLHEFRLDPSNAVELFSQ--YDLILDGTDNF--ATRYLVNDAAVLAGKPYVWGS 164 (392)
T ss_pred HHhCCCcEEEEEeccCChhHHHHHHhc--CCEEEECCCCH--HHHHHHHHHHHHcCCCEEEEE
Confidence 00 01 134455554 78888765422 245567777777778887753
No 132
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.48 E-value=1.8 Score=45.87 Aligned_cols=83 Identities=18% Similarity=0.314 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeC-cchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~G-AGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
-.-+|-.|++.=++..+.+++.++|+|+| .|..|..+|.+|... |. .+.+++++ ..
T Consensus 137 ~~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~-----g~-------tVtv~~~r-------T~---- 193 (296)
T PRK14188 137 LVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAA-----NA-------TVTIAHSR-------TR---- 193 (296)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhC-----CC-------EEEEECCC-------CC----
Confidence 35667888888889999999999999999 999999999999853 53 46666432 11
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHH
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVI 424 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi 424 (585)
+|.|+++. .|++|-+-+.++.++++++
T Consensus 194 -------------~l~e~~~~--ADIVIsavg~~~~v~~~~l 220 (296)
T PRK14188 194 -------------DLPAVCRR--ADILVAAVGRPEMVKGDWI 220 (296)
T ss_pred -------------CHHHHHhc--CCEEEEecCChhhcchhee
Confidence 36788886 8999988888877777663
No 133
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.34 E-value=3.5 Score=43.77 Aligned_cols=85 Identities=19% Similarity=0.214 Sum_probs=68.4
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-.|++.-++..+.+++.+++|++|.+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 138 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------aTVt~chs~------------ 193 (294)
T PRK14187 138 CLIPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLG-----EN-------CTVTTVHSA------------ 193 (294)
T ss_pred CccCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhh-----CC-------CEEEEeCCC------------
Confidence 34567888889999999999999999999986 578888888864 24 346666653
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.++.++|+
T Consensus 194 ------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 223 (294)
T PRK14187 194 ------------TRDLADYCSK--ADILVAAVGIPNFVKYSWIK 223 (294)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1347778887 99999999999999999997
No 134
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=87.25 E-value=3.6 Score=43.82 Aligned_cols=102 Identities=25% Similarity=0.380 Sum_probs=66.2
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc--CCCCCHHHHhcc
Q 007904 327 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 403 (585)
Q Consensus 327 riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~--~~~~~L~e~v~~ 403 (585)
||.|+|| |..|..+|-+|+. .|+ -..+.|+|.+. ..+-.-+|.+.. ...+-. ....++.+++++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~--a~g~a~DL~~~~-~~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-----QPY-----VSELSLYDIAG--AAGVAADLSHIP-TAASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEecCCC--CcEEEchhhcCC-cCceEEEecCCCchHHHcCC
Confidence 6899999 9999999988754 255 26799999876 222111243322 101101 011246778887
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 404 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 404 vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.|++|=+.+.+ |- .=+++.+.+.+++..-||+-.|||.
T Consensus 68 --aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPv 119 (312)
T TIGR01772 68 --ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPV 119 (312)
T ss_pred --CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCch
Confidence 89887555543 21 2246777888999999999999998
No 135
>PRK07411 hypothetical protein; Validated
Probab=87.23 E-value=1.3 Score=48.20 Aligned_cols=99 Identities=21% Similarity=0.262 Sum_probs=62.8
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch-----------hchhhcc
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-----------FKKPWAH 389 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~-----------~k~~fa~ 389 (585)
.+|++.||+|+|+|.-|.-+|..|+.+ |+ ++|.++|.+ .|..+ +|+. .|..-|.
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~-----Gv------g~l~lvD~D-~ve~s---NL~RQ~l~~~~dvG~~Ka~~a~ 98 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAA-----GI------GRIGIVDFD-VVDSS---NLQRQVIHGTSWVGKPKIESAK 98 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC-Eeccc---ccCcCcccChHHCCCcHHHHHH
Confidence 578899999999999999999999875 87 899999987 22221 1221 1111111
Q ss_pred c-----cC---------CC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEe
Q 007904 390 E-----HE---------PV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 438 (585)
Q Consensus 390 ~-----~~---------~~--~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFa 438 (585)
+ .+ .. .+..+.++. .|++|-+.... =+..+|..++.....|.|++
T Consensus 99 ~~l~~~np~v~v~~~~~~~~~~~~~~~~~~--~D~Vvd~~d~~--~~r~~ln~~~~~~~~p~v~~ 159 (390)
T PRK07411 99 NRILEINPYCQVDLYETRLSSENALDILAP--YDVVVDGTDNF--PTRYLVNDACVLLNKPNVYG 159 (390)
T ss_pred HHHHHHCCCCeEEEEecccCHHhHHHHHhC--CCEEEECCCCH--HHHHHHHHHHHHcCCCEEEE
Confidence 0 00 01 123445554 77777765532 26677777777777888764
No 136
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=87.18 E-value=3.4 Score=43.95 Aligned_cols=85 Identities=15% Similarity=0.212 Sum_probs=68.6
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-+|++.=++..|.+|+.+++||+|-+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 145 ~~~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~-----~~-------ATVtvchs~------------ 200 (299)
T PLN02516 145 LFLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLK-----AD-------ATVTVVHSR------------ 200 (299)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC------------
Confidence 44567788889999999999999999999986 568888888864 24 357777653
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.|+.++|+
T Consensus 201 ------------T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk 230 (299)
T PLN02516 201 ------------TPDPESIVRE--ADIVIAAAGQAMMIKGDWIK 230 (299)
T ss_pred ------------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1347788887 99999999999999999998
No 137
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.15 E-value=3.6 Score=43.72 Aligned_cols=89 Identities=20% Similarity=0.259 Sum_probs=68.7
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-+|++.=++..|.+++.++++++|.+ ..|.-+|.||.. .|+. ....+.+|.|+
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~---~~atVtv~hs~------------ 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQ-----KGPG---ANATVTIVHTR------------ 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHh-----cccC---CCCEEEEecCC------------
Confidence 45567888889999999999999999999986 578888888864 2321 01345555443
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-+.+.++.|+.++|+
T Consensus 199 ------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 228 (297)
T PRK14168 199 ------------SKNLARHCQR--ADILIVAAGVPNLVKPEWIK 228 (297)
T ss_pred ------------CcCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1358888887 99999999999999999998
No 138
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=87.10 E-value=0.68 Score=46.33 Aligned_cols=38 Identities=29% Similarity=0.340 Sum_probs=33.8
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+|++.||+++|+|..|..||..|+.+ |+ .+|.++|.+
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 467899999999999999999999764 87 789999986
No 139
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=87.07 E-value=0.51 Score=52.50 Aligned_cols=124 Identities=18% Similarity=0.347 Sum_probs=81.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-cCC-----CCCH
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNL 397 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~~~-----~~~L 397 (585)
+..||+|+||||. .-.+++...+.+.+.++. +.|||+|-+ .+|.+.....-+.+.+. ..+ ..++
T Consensus 2 ~~~KI~iIGgGSt--~tp~~v~g~l~~~e~l~~----~el~L~Did----~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~ 71 (442)
T COG1486 2 KKFKIVIIGGGST--YTPKLLLGDLARTEELPV----RELALYDID----EERLKIIAILAKKLVEEAGAPVKVEATTDR 71 (442)
T ss_pred CcceEEEECCCcc--ccHHHHHHHHhcCccCCc----ceEEEEeCC----HHHHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 4579999999998 567788877776667753 789999974 44422111111222222 122 2589
Q ss_pred HHHhcccCCcEEE---------------------ec-----cCCCCCCC--------HHHHHHHHcCCCCcEEEecCCCC
Q 007904 398 LDAVKVIKPTILI---------------------GS-----SGVGRTFT--------KEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 398 ~e~v~~vkptvLI---------------------G~-----S~~~g~Ft--------~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.||++. +|.+| |+ .++||.|. -|+++.|-+.|+.--++=.+||-
T Consensus 72 ~eAl~g--AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~ 149 (442)
T COG1486 72 REALEG--ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPA 149 (442)
T ss_pred HHHhcC--CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChH
Confidence 999998 77766 11 23334332 48999999999999999999999
Q ss_pred CcCCCCHHHHhccccC-cEE
Q 007904 444 SQSECTAEEAYTWSKG-RAI 462 (585)
Q Consensus 444 ~~~E~tpeda~~wt~G-rai 462 (585)
+++|- -+++|+.+ +.|
T Consensus 150 --~~vTe-Av~r~~~~~K~V 166 (442)
T COG1486 150 --AIVTE-AVRRLYPKIKIV 166 (442)
T ss_pred --HHHHH-HHHHhCCCCcEE
Confidence 77774 34555544 444
No 140
>PLN02306 hydroxypyruvate reductase
Probab=86.78 E-value=5.2 Score=43.84 Aligned_cols=174 Identities=18% Similarity=0.236 Sum_probs=100.1
Q ss_pred cCCCeeeccCC---CchHHHHHHHHHHHHHHh---------------------CCCcccceEEEeCcchHHHHHHHHHHH
Q 007904 291 GTTHLVFNDDI---QGTASVVLAGVVAALKLI---------------------GGTLAEHRFLFLGAGEAGTGIAELIAL 346 (585)
Q Consensus 291 r~~~~~FnDDi---QGTaaV~lAgll~A~r~~---------------------g~~l~d~riv~~GAGsAg~GIA~ll~~ 346 (585)
+..+.+.|--- ..+|=-+++-+|+.+|-. |..|.++++.|+|.|..|..+|+++..
T Consensus 107 ~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~ 186 (386)
T PLN02306 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVE 186 (386)
T ss_pred HCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHh
Confidence 35677777532 223444577777766532 345889999999999999999999865
Q ss_pred HHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc--------c--cCCCCCHHHHhcccCCcEEEec----
Q 007904 347 EISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--------E--HEPVNNLLDAVKVIKPTILIGS---- 412 (585)
Q Consensus 347 ~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~--------~--~~~~~~L~e~v~~vkptvLIG~---- 412 (585)
+| |+ +++.+|+..- . .+......+.. + .....+|.|+++. .|+++-.
T Consensus 187 ~f----Gm-------~V~~~d~~~~---~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~--sDiV~lh~Plt 247 (386)
T PLN02306 187 GF----KM-------NLIYYDLYQS---T---RLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE--ADVISLHPVLD 247 (386)
T ss_pred cC----CC-------EEEEECCCCc---h---hhhhhhhhhcccccccccccccccccCCHHHHHhh--CCEEEEeCCCC
Confidence 53 64 6888887421 0 01100001100 0 0112479999987 9998863
Q ss_pred cCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhc-c-ccCcEEEecCC-CC--CcceeCCeeeCcCCCccc
Q 007904 413 SGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT-W-SKGRAIFASGS-PF--DPFEYNGKVFVPGQANNA 487 (585)
Q Consensus 413 S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~-w-t~Grai~AsGS-Pf--~pv~~~G~~~~p~Q~NN~ 487 (585)
...-|.|+++.++.|. +.-++.=.| +.++-=|+|+. + ..|+. .+.|- =| +|. .+. .--+..|+
T Consensus 248 ~~T~~lin~~~l~~MK---~ga~lIN~a----RG~lVDe~AL~~AL~sg~i-~gAaLDVf~~EP~-~~~---~L~~~pNV 315 (386)
T PLN02306 248 KTTYHLINKERLALMK---KEAVLVNAS----RGPVIDEVALVEHLKANPM-FRVGLDVFEDEPY-MKP---GLADMKNA 315 (386)
T ss_pred hhhhhhcCHHHHHhCC---CCeEEEECC----CccccCHHHHHHHHHhCCe-eEEEEeCCCCCCC-Ccc---hHhhCCCE
Confidence 2224799999999995 555666554 45555554442 2 24553 32221 01 111 010 11245688
Q ss_pred ccchhhhH
Q 007904 488 YIFPGFGL 495 (585)
Q Consensus 488 yiFPGigl 495 (585)
.+-|=++-
T Consensus 316 ilTPHiag 323 (386)
T PLN02306 316 VVVPHIAS 323 (386)
T ss_pred EECCcccc
Confidence 88888763
No 141
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.69 E-value=1.6 Score=43.46 Aligned_cols=118 Identities=12% Similarity=0.173 Sum_probs=68.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcc
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 403 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~ 403 (585)
++.||.|+|+|..|..++..+... |.. -.++++++++. + .+.+...+.+|- .....++.+++++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~-----~~~---~~~~i~~~~~~-----~-~~~~~~~~~~~~--~~~~~~~~~~~~~ 66 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKT-----SKE---YIEEIIVSNRS-----N-VEKLDQLQARYN--VSTTTDWKQHVTS 66 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-----CCC---CcCeEEEECCC-----C-HHHHHHHHHHcC--cEEeCChHHHHhc
Confidence 357899999999999998888652 320 12346666542 0 111222222221 1123567888875
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhcccc-CcEEEecC
Q 007904 404 IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK-GRAIFASG 466 (585)
Q Consensus 404 vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~-Grai~AsG 466 (585)
.|++| ++.++. .-+++++.++.+.+..+|+.++.-. +.+..-+|.. +..++-++
T Consensus 67 --~DiVi-iavp~~-~~~~v~~~l~~~~~~~~vis~~~gi-----~~~~l~~~~~~~~~v~r~~ 121 (245)
T PRK07634 67 --VDTIV-LAMPPS-AHEELLAELSPLLSNQLVVTVAAGI-----GPSYLEERLPKGTPVAWIM 121 (245)
T ss_pred --CCEEE-EecCHH-HHHHHHHHHHhhccCCEEEEECCCC-----CHHHHHHHcCCCCeEEEEC
Confidence 78777 445454 4588999888654445777777655 3444544443 33455555
No 142
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.68 E-value=3.6 Score=43.84 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=66.1
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcc--cCCCccCCchhchhhccccCCCCCHHHHhc
Q 007904 326 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 402 (585)
Q Consensus 326 ~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi--~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~ 402 (585)
.||.|+|| |..|..+|-.|+. .|+-.-.-...+.|+|.+.=. ..+..-+|.+...+|.....-..+..+.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIAS-----GEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----ccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC
Confidence 38999999 9999988887764 255100011279999985322 111111233322233221011134567787
Q ss_pred ccCCcEEEeccCC---CCCCC------------HHHHHHHHcCC-CCcEEEecCCCC
Q 007904 403 VIKPTILIGSSGV---GRTFT------------KEVIEAMASFN-EKPLILALSNPT 443 (585)
Q Consensus 403 ~vkptvLIG~S~~---~g~Ft------------~evi~~Ma~~~-erPIIFaLSNPt 443 (585)
+ .|++|=+.+. +| .| +++...+.+++ +.-||+-.|||.
T Consensus 78 d--aDivvitaG~~~k~g-~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 131 (322)
T cd01338 78 D--ADWALLVGAKPRGPG-MERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC 131 (322)
T ss_pred C--CCEEEEeCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH
Confidence 7 8998855444 33 23 46777888899 499999999998
No 143
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=86.58 E-value=2.2 Score=44.49 Aligned_cols=98 Identities=14% Similarity=0.190 Sum_probs=63.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-cCCCCCHHHHhccc-
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVI- 404 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~~~~~~L~e~v~~v- 404 (585)
+|.|+|.|..|..+|..|.+. | .++.++|+. .. .... ++.. .....++.|+++..
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g-------~~V~~~dr~----~~---~~~~----l~~~g~~~~~s~~~~~~~~~ 58 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----G-------HDCVGYDHD----QD---AVKA----MKEDRTTGVANLRELSQRLS 58 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----C-------CEEEEEECC----HH---HHHH----HHHcCCcccCCHHHHHhhcC
Confidence 699999999999999988763 5 356777763 11 1111 2111 11234666666543
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCCCcCCCCHH
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPTSQSECTAE 451 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma~~~-erPIIFaLSNPt~~~E~tpe 451 (585)
++|++|= +.+.+ ..+++++.++.+- +..||+-+||.. ++-+-+
T Consensus 59 ~~dvIi~-~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~--~~~t~~ 102 (298)
T TIGR00872 59 APRVVWV-MVPHG-IVDAVLEELAPTLEKGDIVIDGGNSY--YKDSLR 102 (298)
T ss_pred CCCEEEE-EcCch-HHHHHHHHHHhhCCCCCEEEECCCCC--cccHHH
Confidence 5888874 44444 7899999887654 568999999865 444444
No 144
>PRK13243 glyoxylate reductase; Reviewed
Probab=86.44 E-value=6.7 Score=41.88 Aligned_cols=167 Identities=15% Similarity=0.128 Sum_probs=97.5
Q ss_pred CCCeeeccCC---CchHHHHHHHHHHHHHH-------------------------hCCCcccceEEEeCcchHHHHHHHH
Q 007904 292 TTHLVFNDDI---QGTASVVLAGVVAALKL-------------------------IGGTLAEHRFLFLGAGEAGTGIAEL 343 (585)
Q Consensus 292 ~~~~~FnDDi---QGTaaV~lAgll~A~r~-------------------------~g~~l~d~riv~~GAGsAg~GIA~l 343 (585)
..+++.|--- +..|=-+++.+|+..|- .|..|.+++|.|+|.|..|..+|+.
T Consensus 89 ~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~ 168 (333)
T PRK13243 89 RGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARR 168 (333)
T ss_pred cCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHHHHHHHHH
Confidence 4566666321 22344467777777664 2456899999999999999999999
Q ss_pred HHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCC
Q 007904 344 IALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTF 419 (585)
Q Consensus 344 l~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~F 419 (585)
+... |+ +++.+|+.. . . .. ...+. ....+|.|+++. .|+++=.-- .-+.|
T Consensus 169 l~~~-----G~-------~V~~~d~~~----~--~-~~--~~~~~---~~~~~l~ell~~--aDiV~l~lP~t~~T~~~i 222 (333)
T PRK13243 169 AKGF-----GM-------RILYYSRTR----K--P-EA--EKELG---AEYRPLEELLRE--SDFVSLHVPLTKETYHMI 222 (333)
T ss_pred HHHC-----CC-------EEEEECCCC----C--h-hh--HHHcC---CEecCHHHHHhh--CCEEEEeCCCChHHhhcc
Confidence 9653 64 578888741 1 1 10 01111 123479999887 898874421 13689
Q ss_pred CHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHh-cc-ccCcEEEecCCCC--CcceeCCeeeCcCCCcccccchhhhH
Q 007904 420 TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY-TW-SKGRAIFASGSPF--DPFEYNGKVFVPGQANNAYIFPGFGL 495 (585)
Q Consensus 420 t~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~-~w-t~Grai~AsGSPf--~pv~~~G~~~~p~Q~NN~yiFPGigl 495 (585)
+++.+..|. +..++.=.|.= ++--++|+ ++ ..|+.-.|.=-=| +|.. + .. -=+..|+++-|=+|-
T Consensus 223 ~~~~~~~mk---~ga~lIN~aRg----~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~-~-~p--L~~~~nvilTPHia~ 291 (333)
T PRK13243 223 NEERLKLMK---PTAILVNTARG----KVVDTKALVKALKEGWIAGAGLDVFEEEPYY-N-EE--LFSLKNVVLAPHIGS 291 (333)
T ss_pred CHHHHhcCC---CCeEEEECcCc----hhcCHHHHHHHHHcCCeEEEEeccCCCCCCC-C-ch--hhcCCCEEECCcCCc
Confidence 999999995 66777766543 33333333 22 4565433321111 1111 1 11 123458888888874
No 145
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.33 E-value=4.2 Score=42.99 Aligned_cols=86 Identities=16% Similarity=0.244 Sum_probs=69.3
Q ss_pred CchHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC
Q 007904 302 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 380 (585)
Q Consensus 302 QGTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l 380 (585)
.+-.-+|-+|++.=++..|.+++.+++|++|-+ ..|--+|.||.. .| ..+.+|+|+
T Consensus 134 ~~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~-------atVt~chs~----------- 190 (282)
T PRK14166 134 SGFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLN-----AG-------ATVSVCHIK----------- 190 (282)
T ss_pred CCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC-----------
Confidence 355677888999999999999999999999986 578888888864 24 345666553
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 381 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 381 ~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.||+++|+
T Consensus 191 -------------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 220 (282)
T PRK14166 191 -------------TKDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK 220 (282)
T ss_pred -------------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1347788887 99999999999999999997
No 146
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.25 E-value=4.2 Score=43.00 Aligned_cols=85 Identities=20% Similarity=0.379 Sum_probs=68.0
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-+|++.=++..|.+|..+++|++|.+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 135 ~~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~-------atVtichs~------------ 190 (284)
T PRK14170 135 SFVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLN-----EN-------ATVTIAHSR------------ 190 (284)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC------------
Confidence 34567788889999999999999999999986 578888888864 24 346666542
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.|++++|+
T Consensus 191 ------------T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk 220 (284)
T PRK14170 191 ------------TKDLPQVAKE--ADILVVATGLAKFVKKDYIK 220 (284)
T ss_pred ------------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1347788887 99999999999999999997
No 147
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.25 E-value=2.9 Score=44.15 Aligned_cols=86 Identities=19% Similarity=0.348 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
-.-+|-.|++.-++..|.+|+.+++|++|.+ ..|.-+|.||..- ..| ..+.+|.|+
T Consensus 137 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~---~~~-------atVtvchs~------------- 193 (284)
T PRK14193 137 PLPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRR---SEN-------ATVTLCHTG------------- 193 (284)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhc---cCC-------CEEEEeCCC-------------
Confidence 3567888899999999999999999999985 6788888888531 013 235566542
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.++.++|+
T Consensus 194 -----------T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik 223 (284)
T PRK14193 194 -----------TRDLAAHTRR--ADIIVAAAGVAHLVTADMVK 223 (284)
T ss_pred -----------CCCHHHHHHh--CCEEEEecCCcCccCHHHcC
Confidence 1358888887 99999999999999999997
No 148
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.20 E-value=3.1 Score=44.03 Aligned_cols=86 Identities=20% Similarity=0.299 Sum_probs=69.4
Q ss_pred CchHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC
Q 007904 302 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 380 (585)
Q Consensus 302 QGTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l 380 (585)
.+-.-+|-+|++.=++..+.+++..++|++|.+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 136 ~~~~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~-------ATVtichs~----------- 192 (288)
T PRK14171 136 QGFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLK-----EN-------CSVTICHSK----------- 192 (288)
T ss_pred CCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC-----------
Confidence 445678888899999999999999999999986 578888888864 24 245666553
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 381 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 381 ~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.+++++|+
T Consensus 193 -------------T~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk 222 (288)
T PRK14171 193 -------------THNLSSITSK--ADIVVAAIGSPLKLTAEYFN 222 (288)
T ss_pred -------------CCCHHHHHhh--CCEEEEccCCCCccCHHHcC
Confidence 1347788887 99999999999999999997
No 149
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=86.03 E-value=0.27 Score=46.89 Aligned_cols=90 Identities=23% Similarity=0.399 Sum_probs=49.9
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC-Cccc-----------CCCccCCchhchhhccc
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIV-----------SSRKDSLQHFKKPWAHE 390 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~-GLi~-----------~~r~~~l~~~k~~fa~~ 390 (585)
+.-.+|||.|+|.+|.|.++++... |. ++...|.. ..+. ....+.+.. +.|++.
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-----Ga-------~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~ 83 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-----GA-------EVVVPDERPERLRQLESLGAYFIEVDYEDHLER--KDFDKA 83 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSHHHHHHHHHTTTEESEETTTTTTTS--B-CCHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-----CC-------EEEeccCCHHHHHhhhcccCceEEEcccccccc--cccchh
Confidence 5668999999999999999998763 53 34455542 0000 000000000 002211
Q ss_pred ----cCC--CCCHHHHhcccCCcEEEecc-----CCCCCCCHHHHHHHH
Q 007904 391 ----HEP--VNNLLDAVKVIKPTILIGSS-----GVGRTFTKEVIEAMA 428 (585)
Q Consensus 391 ----~~~--~~~L~e~v~~vkptvLIG~S-----~~~g~Ft~evi~~Ma 428 (585)
.+. ...|.+.++. .|++|+.. ..|-+||++.++.|.
T Consensus 84 ~~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~ 130 (168)
T PF01262_consen 84 DYYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMK 130 (168)
T ss_dssp HCHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSS
T ss_pred hhhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccC
Confidence 011 1358888876 79999743 445699999999996
No 150
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=85.45 E-value=3 Score=42.71 Aligned_cols=101 Identities=13% Similarity=0.127 Sum_probs=56.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCC-CccCCchh--chhhccccCCCCCHHHHhcc
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQHF--KKPWAHEHEPVNNLLDAVKV 403 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~-r~~~l~~~--k~~fa~~~~~~~~L~e~v~~ 403 (585)
||.|+|+|+.|..+|..|.+. | .+++++++ +--.+. +...+.-. ....-.......++.++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGP 68 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCC
Confidence 799999999999999988753 4 46788877 210000 00001000 00000000112355565543
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 007904 404 IKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 444 (585)
Q Consensus 404 vkptvLIG~S~~~g~Ft~evi~~Ma~~-~erPIIFaLSNPt~ 444 (585)
+|++|=+... ...+++++.++.+ .+..+|+.+.|.-.
T Consensus 69 --~d~vilavk~--~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 69 --FDLVILAVKA--YQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred --CCEEEEEecc--cCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 7766533332 2478999988764 34567888999863
No 151
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=85.39 E-value=4.9 Score=42.91 Aligned_cols=135 Identities=17% Similarity=0.174 Sum_probs=78.3
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcc--cCCCccCCchhchhhccccCCCCCHHHHhcc
Q 007904 327 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 403 (585)
Q Consensus 327 riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi--~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~ 403 (585)
||.|.|| |..|..+|..|+.. |+-..+..-.+.|+|.+.-. ..+..-+|.+...++........+..+.+++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-----~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~ 75 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-----RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTD 75 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-----cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCC
Confidence 6899999 99999999887652 55110001169999974221 1111112333322232111111255677877
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcC-CCCcEEEecCCCCCcCCCCHHHHhccccC--cEEEecC
Q 007904 404 IKPTILIGSSGVG---RT-----------FTKEVIEAMASF-NEKPLILALSNPTSQSECTAEEAYTWSKG--RAIFASG 466 (585)
Q Consensus 404 vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~-~erPIIFaLSNPt~~~E~tpeda~~wt~G--rai~AsG 466 (585)
.|++|=+.+.+ |- .=+++.+.|.++ ++.-||+-.|||. .+..--+++++.+ +-+|.||
T Consensus 76 --aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPv---Dv~t~v~~~~sg~~~~~vig~g 150 (324)
T TIGR01758 76 --VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPA---NTNALVLSNYAPSIPPKNFSAL 150 (324)
T ss_pred --CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH---HHHHHHHHHHcCCCCcceEEEe
Confidence 88888555554 21 124678888999 4999999999998 3334444555522 2277888
Q ss_pred CCCCc
Q 007904 467 SPFDP 471 (585)
Q Consensus 467 SPf~p 471 (585)
+-.+.
T Consensus 151 t~LDs 155 (324)
T TIGR01758 151 TRLDH 155 (324)
T ss_pred eehHH
Confidence 65543
No 152
>PRK08291 ectoine utilization protein EutC; Validated
Probab=85.32 E-value=3.1 Score=44.08 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=65.5
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc
Q 007904 311 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 390 (585)
Q Consensus 311 gll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~ 390 (585)
|++++..... -..++++|+|+|..|..++..+... .|+ +++.++++. ..+ .......+.+.
T Consensus 120 ~~~a~~~la~--~~~~~v~IiGaG~~a~~~~~al~~~----~~~------~~V~v~~R~----~~~---a~~l~~~~~~~ 180 (330)
T PRK08291 120 GAVAARHLAR--EDASRAAVIGAGEQARLQLEALTLV----RPI------REVRVWARD----AAK---AEAYAADLRAE 180 (330)
T ss_pred HHHHHHHhCC--CCCCEEEEECCCHHHHHHHHHHHhc----CCC------CEEEEEcCC----HHH---HHHHHHHHhhc
Confidence 4445544432 2347999999999988777766542 244 678888763 221 22222222111
Q ss_pred ----cCCCCCHHHHhcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHH
Q 007904 391 ----HEPVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEE 452 (585)
Q Consensus 391 ----~~~~~~L~e~v~~vkptvLIG~S~~-~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tped 452 (585)
.....++.++++. .|++|-++.. ..+|+.++++.- ..|+.--|+-..+-|+.|+-
T Consensus 181 ~g~~v~~~~d~~~al~~--aDiVi~aT~s~~p~i~~~~l~~g-----~~v~~vg~d~~~~rEld~~~ 240 (330)
T PRK08291 181 LGIPVTVARDVHEAVAG--ADIIVTTTPSEEPILKAEWLHPG-----LHVTAMGSDAEHKNEIAPAV 240 (330)
T ss_pred cCceEEEeCCHHHHHcc--CCEEEEeeCCCCcEecHHHcCCC-----ceEEeeCCCCCCcccCCHHH
Confidence 1123678899986 8999876533 346777766521 22332224433456888765
No 153
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=85.30 E-value=4.3 Score=43.35 Aligned_cols=111 Identities=17% Similarity=0.126 Sum_probs=66.3
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcc--cCCCccCCchhchhhccccCCCCCHHHHhc
Q 007904 326 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 402 (585)
Q Consensus 326 ~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi--~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~ 402 (585)
-||.|+|| |..|..+|-.|+. .|+-.-.-...|.|+|.+.-. .++..-+|.+..-++.....-..+..+.++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 78 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIAS-----GELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFK 78 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----CCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhC
Confidence 37999998 9999999988764 255110011279999985311 111111133222122111111135567777
Q ss_pred ccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCC-CcEEEecCCCC
Q 007904 403 VIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNE-KPLILALSNPT 443 (585)
Q Consensus 403 ~vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~e-rPIIFaLSNPt 443 (585)
+ .|++|=+.+.+ |- .=+++++.+++++. .-||+--|||.
T Consensus 79 d--aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv 132 (323)
T TIGR01759 79 D--VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA 132 (323)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH
Confidence 7 89888554443 31 12467788889997 99999999998
No 154
>PRK08374 homoserine dehydrogenase; Provisional
Probab=85.24 E-value=4.4 Score=43.40 Aligned_cols=105 Identities=18% Similarity=0.241 Sum_probs=63.5
Q ss_pred ceEEEeCcchHHHHHHHHHHH---HHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC---chhchhhcccc------C-
Q 007904 326 HRFLFLGAGEAGTGIAELIAL---EISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL---QHFKKPWAHEH------E- 392 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~---~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l---~~~k~~fa~~~------~- 392 (585)
.+|.++|.|..|.+++++|.+ .+.++.|+. -+=+-+.|++|-+...+.-++ ..+++.+.... .
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~----l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~ 78 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVE----LKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEV 78 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccc
Confidence 589999999999999999987 333334531 122456799998876543112 11222221100 0
Q ss_pred CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 007904 393 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 437 (585)
Q Consensus 393 ~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIF 437 (585)
...++.|.++...+||+|-+++.. ...+-+.+.+. +..++|.
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~~~-~a~~~~~~al~--~G~~VVt 120 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTNDK-NAHEWHLEALK--EGKSVVT 120 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCCcH-HHHHHHHHHHh--hCCcEEE
Confidence 012688888877899999999633 33333333343 4677775
No 155
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.19 E-value=14 Score=37.88 Aligned_cols=32 Identities=31% Similarity=0.567 Sum_probs=26.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+||.|+|+|..|.+||..+... |. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-----g~-------~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-----GY-------DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-----CC-------ceEEEeCC
Confidence 5899999999999999988653 64 68888854
No 156
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.18 E-value=2.3 Score=45.50 Aligned_cols=108 Identities=19% Similarity=0.135 Sum_probs=53.9
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC---cC-----CCCHHHHhccccCcEEEecCCCCC
Q 007904 399 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS---QS-----ECTAEEAYTWSKGRAIFASGSPFD 470 (585)
Q Consensus 399 e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~---~~-----E~tpeda~~wt~Grai~AsGSPf~ 470 (585)
++-+..+|+++|..|+. ++-..++-.. .++-+|=|+.=.-||.. +- +-|.++++++.. . |+..-=..
T Consensus 104 ~l~~~~~~~aIlaSnTS-~l~~s~la~~-~~~p~R~~g~HffnP~~~~pLVEVv~g~~T~~e~~~~~~--~-f~~~lGk~ 178 (321)
T PRK07066 104 RISRAAKPDAIIASSTS-GLLPTDFYAR-ATHPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAM--G-IYRALGMR 178 (321)
T ss_pred HHHHhCCCCeEEEECCC-ccCHHHHHHh-cCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHH--H-HHHHcCCE
Confidence 34455677777777775 3322222222 23334446766777753 22 234455555421 1 21111133
Q ss_pred cceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHH
Q 007904 471 PFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAA 513 (585)
Q Consensus 471 pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aA 513 (585)
||.++ ...||-.=|-+.+|-+-=++-+..--..|.+-+-.|
T Consensus 179 pV~v~--kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a 219 (321)
T PRK07066 179 PLHVR--KEVPGFIADRLLEALWREALHLVNEGVATTGEIDDA 219 (321)
T ss_pred eEecC--CCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 44432 246777777777776666555555444555555544
No 157
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=84.94 E-value=1.9 Score=44.81 Aligned_cols=117 Identities=20% Similarity=0.391 Sum_probs=69.7
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCcc----CCchhchhhcccc---CCCCCHHHH
Q 007904 328 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEH---EPVNNLLDA 400 (585)
Q Consensus 328 iv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~----~l~~~k~~fa~~~---~~~~~L~e~ 400 (585)
|.|+|||..|.++|..+.. .|+ + .++++|.+ .++.. ++.+.. .+.... ....+. ++
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l----~--eV~L~Di~----e~~~~g~~~dl~~~~-~~~~~~~~I~~t~d~-~~ 63 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KEL----G--DVVLLDIV----EGLPQGKALDISQAA-PILGSDTKVTGTNDY-ED 63 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCC----c--EEEEEeCC----CcHHHHHHHHHHHhh-hhcCCCeEEEEcCCH-HH
Confidence 5799999999999987764 265 2 79999985 11110 011100 000000 011344 45
Q ss_pred hcccCCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccCc---EEE
Q 007904 401 VKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGR---AIF 463 (585)
Q Consensus 401 v~~vkptvLIG~S~~~---g-----------~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Gr---ai~ 463 (585)
+++ .|++|=+.+.+ | -+-+++++.|.+++...+|+-.|||. ......+++++ |. -+|
T Consensus 64 l~d--ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~---di~t~~~~~~s-~~~~~rvi 137 (300)
T cd01339 64 IAG--SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPL---DVMTYVAYKAS-GFPRNRVI 137 (300)
T ss_pred hCC--CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHh-CCCHHHEE
Confidence 665 88888433322 2 12347889999999999999999998 23333444544 32 477
Q ss_pred ecCC
Q 007904 464 ASGS 467 (585)
Q Consensus 464 AsGS 467 (585)
++|+
T Consensus 138 Glgt 141 (300)
T cd01339 138 GMAG 141 (300)
T ss_pred Eecc
Confidence 7774
No 158
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.72 E-value=2.7 Score=44.52 Aligned_cols=102 Identities=16% Similarity=0.319 Sum_probs=64.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc-ccCC--CCCHHHHhcc
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEP--VNNLLDAVKV 403 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~-~~~~--~~~L~e~v~~ 403 (585)
||.|+|||..|.-+|-+|+. .|+ .+.+.|+|.+-=..++..-+|.+. ..|.. ..-. .++ .+.+++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~~~a~g~a~DL~~~-~~~~~~~~~~i~~~~-y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGL-----FSEIVLIDVNEGVAEGEALDFHHA-TALTYSTNTKIRAGD-YDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHHHHHHHhh-hccCCCCCEEEEECC-HHHhCC
Confidence 68999999999999988875 265 358999997411111111113221 22221 0001 133 466776
Q ss_pred cCCcEEEeccCC---CCCCC--------------HHHHHHHHcCCCCcEEEecCCCC
Q 007904 404 IKPTILIGSSGV---GRTFT--------------KEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 404 vkptvLIG~S~~---~g~Ft--------------~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.|++|=+.+. +| -| +++++.+.+++...|++-.|||.
T Consensus 69 --aDivvitaG~~~kpg-~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPv 122 (307)
T cd05290 69 --ADIIVITAGPSIDPG-NTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPL 122 (307)
T ss_pred --CCEEEECCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcH
Confidence 8888855554 34 23 57888899999999999999998
No 159
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.64 E-value=5.8 Score=42.18 Aligned_cols=88 Identities=18% Similarity=0.246 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
-.-+|-.|++.=++..+.+++.+++|++|.+ ..|.-+|.||.. .|.+. ...+.+|.|+
T Consensus 136 ~~PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~~~~---~aTVtvchs~------------- 194 (293)
T PRK14185 136 FVSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQ-----KAYPG---DCTVTVCHSR------------- 194 (293)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHc-----CCCCC---CCEEEEecCC-------------
Confidence 3466888889999999999999999999986 578888888864 23210 0224444432
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.++.++|+
T Consensus 195 -----------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 224 (293)
T PRK14185 195 -----------SKNLKKECLE--ADIIIAALGQPEFVKADMVK 224 (293)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1368888886 99999999999999999997
No 160
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=84.59 E-value=0.92 Score=44.82 Aligned_cols=39 Identities=31% Similarity=0.492 Sum_probs=34.6
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
++|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+-
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~-----GV------g~i~lvD~d~ 53 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLA-----GI------DSITIVDHRL 53 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECCc
Confidence 568899999999999999999999875 87 7899999973
No 161
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=84.23 E-value=1.8 Score=44.63 Aligned_cols=98 Identities=14% Similarity=0.216 Sum_probs=57.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhc--hhhcc------ccCCCCCHH
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK--KPWAH------EHEPVNNLL 398 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k--~~fa~------~~~~~~~L~ 398 (585)
||.|+|+|..|..+|..|... | .+++++|+..-..+ .+.... ..+.. ......++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----G-------HDVTLWARDPEQAA----EINADRENPRYLPGIKLPDNLRATTDLA 66 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEECCHHHHH----HHHHcCcccccCCCCcCCCCeEEeCCHH
Confidence 799999999999999998753 5 35778887421110 010000 00000 001124677
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 007904 399 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 444 (585)
Q Consensus 399 e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~-~erPIIFaLSNPt~ 444 (585)
++++. +|++| ++... ...+++++.+..+ .+.-+|..++|-..
T Consensus 67 ~~~~~--~D~vi-~~v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 67 EALAD--ADLIL-VAVPS-QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred HHHhC--CCEEE-EeCCH-HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 77765 77776 33322 3578888887765 34568888887543
No 162
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.16 E-value=23 Score=36.37 Aligned_cols=108 Identities=15% Similarity=0.205 Sum_probs=58.7
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhccc
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 404 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~v 404 (585)
..||.|+|+|.-|..||+.|+.. |.- ...+++++|+. . .+.+...+.+|- .....+..|+++.
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~-----g~~---~~~~v~v~~r~----~--~~~~~~l~~~~g--~~~~~~~~e~~~~- 65 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHA-----NVV---KGEQITVSNRS----N--ETRLQELHQKYG--VKGTHNKKELLTD- 65 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----C--HHHHHHHHHhcC--ceEeCCHHHHHhc-
Confidence 46899999999999999988753 410 12457777652 0 011122112211 1112456677764
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCCcCCCCHHHHhccc
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTSQSECTAEEAYTWS 457 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma~~-~erPIIFaLSNPt~~~E~tpeda~~wt 457 (585)
.|++| ++-.+ -..+++++.+... .+..+|.-+++-+ ++++.-+|.
T Consensus 66 -aDvVi-lav~p-~~~~~vl~~l~~~~~~~~liIs~~aGi-----~~~~l~~~~ 111 (279)
T PRK07679 66 -ANILF-LAMKP-KDVAEALIPFKEYIHNNQLIISLLAGV-----STHSIRNLL 111 (279)
T ss_pred -CCEEE-EEeCH-HHHHHHHHHHHhhcCCCCEEEEECCCC-----CHHHHHHHc
Confidence 67655 33333 2345666666543 3456777776554 344444443
No 163
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.98 E-value=6.5 Score=41.59 Aligned_cols=85 Identities=21% Similarity=0.296 Sum_probs=68.0
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-.|++.=++..|.+++.+++|++|.+ ..|.-+|.||.. .| ..+.+|.|+
T Consensus 134 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------atVtichs~------------ 189 (282)
T PRK14169 134 TVVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVN-----HD-------ATVTIAHSK------------ 189 (282)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEECCC------------
Confidence 44577888889999999999999999999986 578888888864 24 245556442
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.|+.++|+
T Consensus 190 ------------T~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk 219 (282)
T PRK14169 190 ------------TRNLKQLTKE--ADILVVAVGVPHFIGADAVK 219 (282)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1247788887 99999999999999999997
No 164
>PRK06436 glycerate dehydrogenase; Provisional
Probab=83.82 E-value=9.4 Score=40.43 Aligned_cols=108 Identities=17% Similarity=0.141 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHHh----------------CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEc
Q 007904 304 TASVVLAGVVAALKLI----------------GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVD 367 (585)
Q Consensus 304 TaaV~lAgll~A~r~~----------------g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD 367 (585)
.|=-+++.+|+..|-. +..|.++++.|+|-|..|..+|+++. ++ |+ +++.+|
T Consensus 85 VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~-af----G~-------~V~~~~ 152 (303)
T PRK06436 85 VAEHAFALLLAWAKNICENNYNMKNGNFKQSPTKLLYNKSLGILGYGGIGRRVALLAK-AF----GM-------NIYAYT 152 (303)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHcCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHH-HC----CC-------EEEEEC
Confidence 3444566666665522 35799999999999999999998664 32 65 588888
Q ss_pred CCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 368 SKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 368 ~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+... .+.. . ....+|.|+++. .|+++=+- ..-++|+++.+..|. +..++.=.|.-.
T Consensus 153 r~~~-----~~~~--------~--~~~~~l~ell~~--aDiv~~~lp~t~~T~~li~~~~l~~mk---~ga~lIN~sRG~ 212 (303)
T PRK06436 153 RSYV-----NDGI--------S--SIYMEPEDIMKK--SDFVLISLPLTDETRGMINSKMLSLFR---KGLAIINVARAD 212 (303)
T ss_pred CCCc-----ccCc--------c--cccCCHHHHHhh--CCEEEECCCCCchhhcCcCHHHHhcCC---CCeEEEECCCcc
Confidence 7521 0101 0 012478898876 89887432 123689999999996 677888777544
No 165
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=83.24 E-value=8.4 Score=41.16 Aligned_cols=139 Identities=12% Similarity=0.138 Sum_probs=82.3
Q ss_pred CCCeeecc-CC--CchHHHHHHHHHHHHHH-------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHH
Q 007904 292 TTHLVFND-DI--QGTASVVLAGVVAALKL-------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEIS 349 (585)
Q Consensus 292 ~~~~~FnD-Di--QGTaaV~lAgll~A~r~-------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~ 349 (585)
..+.+.|- +. +..|=-+++-+|+.+|- .|..|.+.+|.|+|.|..|..+|+.+...
T Consensus 91 ~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~-- 168 (330)
T PRK12480 91 HNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGF-- 168 (330)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHhC--
Confidence 45555553 22 23444567777777663 13458899999999999999999988642
Q ss_pred hhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEecc-CC---CCCCCHHHHH
Q 007904 350 KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS-GV---GRTFTKEVIE 425 (585)
Q Consensus 350 ~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S-~~---~g~Ft~evi~ 425 (585)
|. +++.+|+.. .. . ..+.. ...+|.|+++. .|+++=.- .. -+.|.++++.
T Consensus 169 ---G~-------~V~~~d~~~----~~---~----~~~~~---~~~~l~ell~~--aDiVil~lP~t~~t~~li~~~~l~ 222 (330)
T PRK12480 169 ---GA-------TITAYDAYP----NK---D----LDFLT---YKDSVKEAIKD--ADIISLHVPANKESYHLFDKAMFD 222 (330)
T ss_pred ---CC-------EEEEEeCCh----hH---h----hhhhh---ccCCHHHHHhc--CCEEEEeCCCcHHHHHHHhHHHHh
Confidence 64 588888641 10 0 01211 23478899886 88776332 21 1567788888
Q ss_pred HHHcCCCCcEEEecCCCCCcCCCCHHHHhcc-ccCcEEEe
Q 007904 426 AMASFNEKPLILALSNPTSQSECTAEEAYTW-SKGRAIFA 464 (585)
Q Consensus 426 ~Ma~~~erPIIFaLSNPt~~~E~tpeda~~w-t~Grai~A 464 (585)
.|. +..++.-.|.- .-+.-++.+++ ..|+.-.|
T Consensus 223 ~mk---~gavlIN~aRG---~~vd~~aL~~aL~~g~i~ga 256 (330)
T PRK12480 223 HVK---KGAILVNAARG---AVINTPDLIAAVNDGTLLGA 256 (330)
T ss_pred cCC---CCcEEEEcCCc---cccCHHHHHHHHHcCCeeEE
Confidence 885 55566655432 23333333333 34654433
No 166
>PRK06141 ornithine cyclodeaminase; Validated
Probab=83.20 E-value=5.6 Score=41.99 Aligned_cols=104 Identities=16% Similarity=0.180 Sum_probs=63.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc---cCCCCCHHHH
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLDA 400 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~---~~~~~~L~e~ 400 (585)
...+++|+|+|..|..++..+... .++ ++|+++|+. ..+ ...+...+.+. .....++.++
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~----~~~------~~V~V~~Rs----~~~---a~~~a~~~~~~g~~~~~~~~~~~a 186 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASV----RPI------KQVRVWGRD----PAK---AEALAAELRAQGFDAEVVTDLEAA 186 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhc----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCceEEeCCHHHH
Confidence 568999999999999998876553 243 788888773 221 22222222211 1123678889
Q ss_pred hcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEec-CCCCCcCCCCHHH
Q 007904 401 VKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEE 452 (585)
Q Consensus 401 v~~vkptvLIG~S~~~-g~Ft~evi~~Ma~~~erPIIFaL-SNPt~~~E~tped 452 (585)
+++ .|++|-+++.. .+|+.++++ +.-.|-+. |++..+-|+.++-
T Consensus 187 v~~--aDIVi~aT~s~~pvl~~~~l~------~g~~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 187 VRQ--ADIISCATLSTEPLVRGEWLK------PGTHLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred Hhc--CCEEEEeeCCCCCEecHHHcC------CCCEEEeeCCCCcccccCCHHH
Confidence 976 99998776543 246666654 22244443 4556677888753
No 167
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=83.16 E-value=7.7 Score=42.70 Aligned_cols=116 Identities=18% Similarity=0.203 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCCceeeeeecCCCchHHHHHHHHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcch
Q 007904 256 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE 335 (585)
Q Consensus 256 idefv~av~~~fGp~~lIq~EDf~~~~af~lL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGs 335 (585)
.++|++++.+.+|- | .+.+-+.+++.| +-+..++.-..+.|+..|++|+|-+.
T Consensus 248 T~~~L~~la~~~g~-------~--~~~~~~~~~~er------------------~~~~~~l~~~~~~l~Gkrvai~g~~~ 300 (427)
T PRK02842 248 TRAWLEAAAAAFGI-------D--PDGLEEREAPAW------------------ERARKALEPYRELLRGKRVFFLPDSQ 300 (427)
T ss_pred HHHHHHHHHHHhCc-------C--HhHHHHHHHHHH------------------HHHHHHHHHhhhhcCCcEEEEECCch
Confidence 68999999998863 1 111222333333 33455566666778889999999998
Q ss_pred HHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc-----ccCCCCCHHHHhcccCCcEEE
Q 007904 336 AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-----EHEPVNNLLDAVKVIKPTILI 410 (585)
Q Consensus 336 Ag~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~-----~~~~~~~L~e~v~~vkptvLI 410 (585)
-.+++++.|.+. .|+.. ..+-+. - .++ +.....-+.+.. +..+...+++.|+..|||.||
T Consensus 301 ~~~~la~~L~ee----lGm~~-------v~v~t~-~--~~~-~~~~~~~~~l~~~~~v~~~~D~~~l~~~i~~~~pDlli 365 (427)
T PRK02842 301 LEIPLARFLSRE----CGMEL-------VEVGTP-Y--LNR-RFLAAELALLPDGVRIVEGQDVERQLDRIRALRPDLVV 365 (427)
T ss_pred hHHHHHHHHHHh----CCCEE-------EEeCCC-C--CCH-HHHHHHHHhccCCCEEEECCCHHHHHHHHHHcCCCEEE
Confidence 899999998863 37732 111110 0 111 101111111111 111223458889999999999
Q ss_pred ecc
Q 007904 411 GSS 413 (585)
Q Consensus 411 G~S 413 (585)
|-|
T Consensus 366 g~~ 368 (427)
T PRK02842 366 CGL 368 (427)
T ss_pred ccC
Confidence 976
No 168
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=83.03 E-value=3.7 Score=41.84 Aligned_cols=101 Identities=15% Similarity=0.184 Sum_probs=56.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCC-CccCCchhchhhccccCCCCCHHHHhcccC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 405 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~-r~~~l~~~k~~fa~~~~~~~~L~e~v~~vk 405 (585)
||.|+|+|+.|..+|..|.++ | .+++++|+++=-... +...+.-....+........++.++ + +
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~ 66 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G--P 66 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C--C
Confidence 799999999999999888753 5 468888874211000 0000100000000000112345443 3 4
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCC-CcEEEecCCCCC
Q 007904 406 PTILIGSSGVGRTFTKEVIEAMASFNE-KPLILALSNPTS 444 (585)
Q Consensus 406 ptvLIG~S~~~g~Ft~evi~~Ma~~~e-rPIIFaLSNPt~ 444 (585)
+|++| ++... --++++++.++.+.. .-+|+.+.|.-.
T Consensus 67 ~d~vi-la~k~-~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 67 QDLVI-LAVKA-YQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred CCEEE-Eeccc-ccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 78777 34333 247999999986543 346777999753
No 169
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=83.01 E-value=1.1 Score=44.31 Aligned_cols=76 Identities=16% Similarity=0.326 Sum_probs=52.9
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-c--CC-CCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-H--EP-VNN 396 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~--~~-~~~ 396 (585)
++|++.||+|+|+|.-|.=+|+.|+.+ |+ ++|.++|.+- |..+ +|.. +.|... . .+ ...
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~-----GV------g~i~lvD~d~-ve~s---nL~r--qfl~~~~diG~~Ka~a 79 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLS-----GI------GSLTILDDRT-VTEE---DLGA--QFLIPAEDLGQNRAEA 79 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHc-----CC------CEEEEEECCc-ccHh---hCCC--CccccHHHcCchHHHH
Confidence 568899999999999999999999875 87 8999999973 2221 2332 112221 1 11 135
Q ss_pred HHHHhcccCCcEEEecc
Q 007904 397 LLDAVKVIKPTILIGSS 413 (585)
Q Consensus 397 L~e~v~~vkptvLIG~S 413 (585)
+.+.++...|++-|=..
T Consensus 80 ~~~~L~~lNp~v~i~~~ 96 (197)
T cd01492 80 SLERLRALNPRVKVSVD 96 (197)
T ss_pred HHHHHHHHCCCCEEEEE
Confidence 77888889999877543
No 170
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=82.90 E-value=2.3 Score=46.94 Aligned_cols=84 Identities=13% Similarity=0.030 Sum_probs=47.6
Q ss_pred HHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccC
Q 007904 313 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE 392 (585)
Q Consensus 313 l~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~ 392 (585)
+.++.-....|...||+++|-+.-..|+++.+.+ .|+.. ..+..-+..... ..+... .-+. .
T Consensus 299 ~~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~e-----lGm~v----~~~~~~~~~~~~-----~~~~~~-~~~~---~ 360 (432)
T TIGR01285 299 QDAMLDTHFFLGGKKVAIAAEPDLLAAWATFFTS-----MGAQI----VAAVTTTGSPLL-----QKLPVE-TVVI---G 360 (432)
T ss_pred HHHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHHH-----CCCEE----EEEEeCCCCHHH-----HhCCcC-cEEe---C
Confidence 3444444456778999999988889999999764 48732 111111111000 001110 0011 1
Q ss_pred CCCCHHHHhcccCCcEEEeccC
Q 007904 393 PVNNLLDAVKVIKPTILIGSSG 414 (585)
Q Consensus 393 ~~~~L~e~v~~vkptvLIG~S~ 414 (585)
+...|++.++..+||++||-|-
T Consensus 361 D~~~l~~~i~~~~~dliig~s~ 382 (432)
T TIGR01285 361 DLEDLEDLACAAGADLLITNSH 382 (432)
T ss_pred CHHHHHHHHhhcCCCEEEECcc
Confidence 2235788888889999998654
No 171
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=82.59 E-value=12 Score=39.67 Aligned_cols=135 Identities=13% Similarity=0.200 Sum_probs=88.3
Q ss_pred CCCeeeccCC---CchHHHHHHHHHHHHHHh------------------------CCCcccceEEEeCcchHHHHHHHHH
Q 007904 292 TTHLVFNDDI---QGTASVVLAGVVAALKLI------------------------GGTLAEHRFLFLGAGEAGTGIAELI 344 (585)
Q Consensus 292 ~~~~~FnDDi---QGTaaV~lAgll~A~r~~------------------------g~~l~d~riv~~GAGsAg~GIA~ll 344 (585)
..+.+.|--- ..+|=-+++-+|+..|-. +..|.++++.|+|-|..|--+|+++
T Consensus 85 ~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~ 164 (311)
T PRK08410 85 KGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIA 164 (311)
T ss_pred CCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHH
Confidence 4566666422 235556677778777632 2468999999999999999999998
Q ss_pred HHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEec----cCCCCCCC
Q 007904 345 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFT 420 (585)
Q Consensus 345 ~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~----S~~~g~Ft 420 (585)
.. | |+ +|+.+|+.+- .. + ..| ...+|.|+++. .|+++=. ...-++|+
T Consensus 165 ~~-f----gm-------~V~~~d~~~~---~~-~------~~~-----~~~~l~ell~~--sDvv~lh~Plt~~T~~li~ 215 (311)
T PRK08410 165 QA-F----GA-------KVVYYSTSGK---NK-N------EEY-----ERVSLEELLKT--SDIISIHAPLNEKTKNLIA 215 (311)
T ss_pred hh-c----CC-------EEEEECCCcc---cc-c------cCc-----eeecHHHHhhc--CCEEEEeCCCCchhhcccC
Confidence 54 3 65 5888888531 00 0 011 12479999987 8988732 22237999
Q ss_pred HHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhcc--ccCcEE
Q 007904 421 KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW--SKGRAI 462 (585)
Q Consensus 421 ~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~w--t~Grai 462 (585)
++.++.|. +..++.=.| +.++-=|+|+-. ..|+.-
T Consensus 216 ~~~~~~Mk---~~a~lIN~a----RG~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 216 YKELKLLK---DGAILINVG----RGGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred HHHHHhCC---CCeEEEECC----CccccCHHHHHHHHHcCCeE
Confidence 99999996 666777554 455555555432 456644
No 172
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.30 E-value=6.9 Score=40.36 Aligned_cols=32 Identities=34% Similarity=0.527 Sum_probs=26.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+||.|+|+|..|.+||..+..+ |. +++++|++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-----GY-------DVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----CC-------eEEEEeCC
Confidence 6899999999999999998753 63 68888874
No 173
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.28 E-value=8 Score=41.18 Aligned_cols=88 Identities=14% Similarity=0.247 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
-.-+|-.|++.=++..+.+++.++++++|.+ .-|.-+|.||... |.. ....+.+|.|+
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~-----~~~---~~aTVtvchs~------------- 194 (297)
T PRK14167 136 FKPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQK-----ADG---GNATVTVCHSR------------- 194 (297)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcC-----ccC---CCCEEEEeCCC-------------
Confidence 3457888889999999999999999999986 5788888888641 110 01234445432
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-+.|.++.++.++|+
T Consensus 195 -----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 224 (297)
T PRK14167 195 -----------TDDLAAKTRR--ADIVVAAAGVPELIDGSMLS 224 (297)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357788887 99999999999999999997
No 174
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=82.20 E-value=4.3 Score=43.46 Aligned_cols=108 Identities=19% Similarity=0.352 Sum_probs=68.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC-CcccCCCccCCchhchhhccccCCC---CCHHHHh
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEHEPV---NNLLDAV 401 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~-GLi~~~r~~~l~~~k~~fa~~~~~~---~~L~e~v 401 (585)
.||.++|||..|-..|-+|+. .++. +.+.|+|.. +...-...| |.+ -..+....... .+ .+.+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~~-----~el~LiDi~~~~~~G~a~D-L~~-~~~~~~~~~~i~~~~~-y~~~ 67 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGLG-----SELVLIDINEEKAEGVALD-LSH-AAAPLGSDVKITGDGD-YEDL 67 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----cccc-----ceEEEEEcccccccchhcc-hhh-cchhccCceEEecCCC-hhhh
Confidence 389999999999999888843 3552 479999987 221111111 322 11221110011 23 4556
Q ss_pred cccCCcEEEec---cCCCC-----------CCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhcc
Q 007904 402 KVIKPTILIGS---SGVGR-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW 456 (585)
Q Consensus 402 ~~vkptvLIG~---S~~~g-----------~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~w 456 (585)
+. .|+.+=+ ...|| -.-+++.+++++++...||+-.|||. |.++|
T Consensus 68 ~~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPv--------D~~ty 126 (313)
T COG0039 68 KG--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPV--------DILTY 126 (313)
T ss_pred cC--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcH--------HHHHH
Confidence 66 7877733 33444 24467889999999999999999999 77777
No 175
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=82.03 E-value=4.2 Score=42.51 Aligned_cols=107 Identities=16% Similarity=0.197 Sum_probs=62.2
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccC---CCCCH
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE---PVNNL 397 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~---~~~~L 397 (585)
.+|++.+|+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+=.-.. +++. |..+..+.- ...-+
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~-----GV------g~itLiD~D~V~~s----NlnR-Q~~~~~~~vG~~Kve~~ 89 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALART-----GI------GAITLIDMDDVCVT----NTNR-QIHALRDNVGLAKAEVM 89 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCEeccc----cccc-ccccChhhcChHHHHHH
Confidence 468899999999999999999998875 87 78999998744332 2432 211111100 01235
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCc
Q 007904 398 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 445 (585)
Q Consensus 398 ~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~ 445 (585)
.+-+..+.|++-|-.- ...++++-+...-...-.=||-+.-|+.++
T Consensus 90 ~~rl~~INP~~~V~~i--~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k 135 (268)
T PRK15116 90 AERIRQINPECRVTVV--DDFITPDNVAEYMSAGFSYVIDAIDSVRPK 135 (268)
T ss_pred HHHHHhHCCCcEEEEE--ecccChhhHHHHhcCCCCEEEEcCCCHHHH
Confidence 6666666777655332 223455444433221223355566665533
No 176
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=81.98 E-value=1.9 Score=39.59 Aligned_cols=33 Identities=36% Similarity=0.473 Sum_probs=29.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+-
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-----Gv------~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-----GV------GKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC------CEEEEEcCCC
Confidence 689999999999999999874 76 7899999873
No 177
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=81.81 E-value=1.9 Score=41.79 Aligned_cols=32 Identities=34% Similarity=0.423 Sum_probs=28.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
||+++|+|..|..||+.|+.+ |+ ++|.++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV------GNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999864 86 789999987
No 178
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=81.77 E-value=4.8 Score=43.79 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=21.2
Q ss_pred cccceEEEeCcchHHHHHHHHHHH
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIAL 346 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~ 346 (585)
-...||.|+|||+-|+.+|..+..
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~ 32 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGE 32 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHh
Confidence 345799999999999999999976
No 179
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.72 E-value=9.1 Score=40.52 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchh
Q 007904 305 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 383 (585)
Q Consensus 305 aaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~ 383 (585)
.-+|-.|++.=++..+.+++.++++++|-+ ..|.-+|.||.. .| ..+.+|.|+
T Consensus 137 ~PcTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------AtVtichs~-------------- 190 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLE-----RH-------ATVTIAHSR-------------- 190 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC--------------
Confidence 467788889999999999999999999986 578888888864 23 245555442
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 384 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 384 k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.+++++|+
T Consensus 191 ----------T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik 220 (282)
T PRK14182 191 ----------TADLAGEVGR--ADILVAAIGKAELVKGAWVK 220 (282)
T ss_pred ----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1347778887 99999999999999999997
No 180
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.66 E-value=9.2 Score=40.59 Aligned_cols=89 Identities=24% Similarity=0.351 Sum_probs=68.0
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-.|++.=++..|.+|+.+++|++|-+ ..|.-+|.||.. .|.+. ...+.+|.|+
T Consensus 131 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~~~~---~AtVtvchs~------------ 190 (287)
T PRK14181 131 GFIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQ-----KHPDT---NATVTLLHSQ------------ 190 (287)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHh-----CcCCC---CCEEEEeCCC------------
Confidence 45577888899999999999999999999986 578888888864 23210 1234444332
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.+++++|+
T Consensus 191 ------------T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik 220 (287)
T PRK14181 191 ------------SENLTEILKT--ADIIIAAIGVPLFIKEEMIA 220 (287)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1358888887 99999999999999999997
No 181
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=81.65 E-value=1.7 Score=44.34 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=33.6
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+|++.+|+++|+|..|.-+|+.|+.+ |+ .+|.++|.+
T Consensus 7 ~~L~~~~VlVvG~GGvGs~va~~Lar~-----GV------g~i~LvD~D 44 (231)
T cd00755 7 EKLRNAHVAVVGLGGVGSWAAEALARS-----GV------GKLTLIDFD 44 (231)
T ss_pred HHHhCCCEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 357889999999999999999999764 87 799999987
No 182
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=81.62 E-value=3.4 Score=42.37 Aligned_cols=57 Identities=21% Similarity=0.310 Sum_probs=37.8
Q ss_pred CCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 293 THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 293 ~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
++.-+|-|- .|++.+++..+...+..+++|+|+|.+|..++..+.+ .| .+++++|+.
T Consensus 93 ~l~g~NTD~--------~G~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~-----~g-------~~v~v~~R~ 149 (270)
T TIGR00507 93 KLVGYNTDG--------IGLVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLK-----AD-------CNVIIANRT 149 (270)
T ss_pred EEEEEcCCH--------HHHHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 345556553 3455566554555667899999999888777776654 24 368888863
No 183
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=81.55 E-value=1.5 Score=51.14 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=35.2
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCc
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 371 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 371 (585)
.+|++.||+++|||.-|.-+|+.|+.+ |+ ++|.+||.+-+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~-----GV------g~ItlVD~D~V 373 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGW-----GV------RHITFVDNGKV 373 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCEE
Confidence 467899999999999999999999875 87 89999998643
No 184
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.54 E-value=6.4 Score=41.73 Aligned_cols=84 Identities=25% Similarity=0.336 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
-.-+|-.|++.=++..|.+++..++|++|.+ ..|.-+|.||.. .| ..+.+|.|+
T Consensus 134 ~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~-------aTVtichs~------------- 188 (287)
T PRK14173 134 LEPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLR-----ED-------ATVTLAHSK------------- 188 (287)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEeCCC-------------
Confidence 4467888889999999999999999999985 678888888864 24 346666542
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.+++++|+
T Consensus 189 -----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk 218 (287)
T PRK14173 189 -----------TQDLPAVTRR--ADVLVVAVGRPHLITPEMVR 218 (287)
T ss_pred -----------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1247788887 99999999999999999997
No 185
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=81.44 E-value=12 Score=39.84 Aligned_cols=158 Identities=13% Similarity=0.094 Sum_probs=92.3
Q ss_pred chHHHHHHHHHHHHHHh----------------CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEE
Q 007904 303 GTASVVLAGVVAALKLI----------------GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 366 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~----------------g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lv 366 (585)
..|--+++-+|+..|.. +..+.++++.|+|.|..|..+|+.+... |+ +++.+
T Consensus 98 ~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~af-----G~-------~V~~~ 165 (312)
T PRK15469 98 QMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTW-----GF-------PLRCW 165 (312)
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEE
Confidence 34555666666665432 3468899999999999999999999753 75 47777
Q ss_pred cCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 007904 367 DSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNP 442 (585)
Q Consensus 367 D~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~Ft~evi~~Ma~~~erPIIFaLSNP 442 (585)
|+.. .. .+.. ..+ ....+|.|+++. .|+++=+-. .-+.|+++.++.|. +..++.=.|
T Consensus 166 ~~~~----~~---~~~~-~~~----~~~~~l~e~l~~--aDvvv~~lPlt~~T~~li~~~~l~~mk---~ga~lIN~a-- 226 (312)
T PRK15469 166 SRSR----KS---WPGV-QSF----AGREELSAFLSQ--TRVLINLLPNTPETVGIINQQLLEQLP---DGAYLLNLA-- 226 (312)
T ss_pred eCCC----CC---CCCc-eee----cccccHHHHHhc--CCEEEECCCCCHHHHHHhHHHHHhcCC---CCcEEEECC--
Confidence 7631 11 1110 111 123579999987 888873321 12578888888885 455666554
Q ss_pred CCcCCCCHHHHhc--cccCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhh
Q 007904 443 TSQSECTAEEAYT--WSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFG 494 (585)
Q Consensus 443 t~~~E~tpeda~~--wt~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGig 494 (585)
+.++--|+|+. ...|+.-.|.--=|++--.... ..-=+..|+++-|=+|
T Consensus 227 --RG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~-~pl~~~~nvi~TPHia 277 (312)
T PRK15469 227 --RGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPE-SPLWQHPRVAITPHVA 277 (312)
T ss_pred --CccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCC-ChhhcCCCeEECCcCC
Confidence 45666665552 2456654332222321111000 0012446888888776
No 186
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=81.43 E-value=2.2 Score=47.81 Aligned_cols=86 Identities=16% Similarity=0.114 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCCceeeeeecCCCchHHHHHHHHcC-CCe--eeccCCCchHHHHHHHHHHHHHHh--------CCCcccc
Q 007904 258 EFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGT-THL--VFNDDIQGTASVVLAGVVAALKLI--------GGTLAEH 326 (585)
Q Consensus 258 efv~av~~~fGp~~lIq~EDf~~~~af~lL~ryr~-~~~--~FnDDiQGTaaV~lAgll~A~r~~--------g~~l~d~ 326 (585)
+....+.... |+ |..|=+....-.++.++|.- .+| ++|++..+.|....+-+++.++.. ...-.+.
T Consensus 137 ~~~~~~a~~~-p~--i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 213 (515)
T TIGR03140 137 QALNQMALLN-PN--ISHTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDPY 213 (515)
T ss_pred HHHHHHHHhC-CC--ceEEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCCC
Confidence 3334444444 54 44444666777788899974 455 458888888888888888877654 1224457
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 007904 327 RFLFLGAGEAGTGIAELIAL 346 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~ 346 (585)
+++|+|||+||+..|..+..
T Consensus 214 dVvIIGgGpAGl~AA~~la~ 233 (515)
T TIGR03140 214 DVLVVGGGPAGAAAAIYAAR 233 (515)
T ss_pred CEEEECCCHHHHHHHHHHHH
Confidence 89999999999999887765
No 187
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=81.41 E-value=4.8 Score=42.70 Aligned_cols=125 Identities=19% Similarity=0.278 Sum_probs=75.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc--CCCCCHHHHhcc
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 403 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~--~~~~~L~e~v~~ 403 (585)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|.+-=...+-.-+|.+. .+|.... ...++.++ +++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~-----~~~-----~~el~LiD~~~~~~~g~a~Dl~~~-~~~~~~~~v~~~~dy~~-~~~ 71 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILA-----KGL-----ADELVLVDVVEDKLKGEAMDLQHG-SAFLKNPKIEADKDYSV-TAN 71 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHHHHHHHh-hccCCCCEEEECCCHHH-hCC
Confidence 599999999999999887764 265 467999997421111110113221 1232211 11135554 666
Q ss_pred cCCcEEEeccCC---CCCCC------------HHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccc--cCcEEEecC
Q 007904 404 IKPTILIGSSGV---GRTFT------------KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASG 466 (585)
Q Consensus 404 vkptvLIG~S~~---~g~Ft------------~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt--~Grai~AsG 466 (585)
.|++|=+.+. +| -| +++++.|.+++..-+|+-.|||.. ....-+++++ .-+-+|++|
T Consensus 72 --adivvitaG~~~k~g-~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d---~~t~~~~k~sg~p~~~viG~g 145 (312)
T cd05293 72 --SKVVIVTAGARQNEG-ESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVD---IMTYVAWKLSGLPKHRVIGSG 145 (312)
T ss_pred --CCEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHH---HHHHHHHHHhCCCHHHEEecC
Confidence 8988754443 33 23 367788899999999999999983 4444455542 113467776
Q ss_pred CC
Q 007904 467 SP 468 (585)
Q Consensus 467 SP 468 (585)
.-
T Consensus 146 t~ 147 (312)
T cd05293 146 CN 147 (312)
T ss_pred ch
Confidence 53
No 188
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.15 E-value=6.7 Score=41.46 Aligned_cols=86 Identities=17% Similarity=0.230 Sum_probs=68.2
Q ss_pred CchHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCC
Q 007904 302 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 380 (585)
Q Consensus 302 QGTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l 380 (585)
.+-.-+|-.|++.=++..|.+|+..++|++|.+ ..|.-+|.||.. .| ..+.+|+++
T Consensus 135 ~~~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~-------ATVt~chs~----------- 191 (282)
T PRK14180 135 KCLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLN-----AK-------ATVTTCHRF----------- 191 (282)
T ss_pred CCcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEEcCC-----------
Confidence 345677888999999999999999999999986 578888888864 24 245666542
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 381 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 381 ~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.|++++|+
T Consensus 192 -------------T~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk 221 (282)
T PRK14180 192 -------------TTDLKSHTTK--ADILIVAVGKPNFITADMVK 221 (282)
T ss_pred -------------CCCHHHHhhh--cCEEEEccCCcCcCCHHHcC
Confidence 1246677776 99999999999999999997
No 189
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=81.07 E-value=0.68 Score=56.39 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=34.6
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+|++.||+++|||.-|+-+++.|+.+ |+.-. ...+|.++|.+
T Consensus 415 ~kL~~~kVlvvGaGGlG~e~lknLal~-----Gv~~~-~~G~i~IvD~D 457 (1008)
T TIGR01408 415 QKLQNLNIFLVGCGAIGCEMLKNFALM-----GVGTG-KKGMITVTDPD 457 (1008)
T ss_pred HHHhhCcEEEECCChHHHHHHHHHHHh-----CCCcC-CCCeEEEECCC
Confidence 468899999999999999999999875 66211 13689999986
No 190
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=80.96 E-value=6.2 Score=43.14 Aligned_cols=85 Identities=16% Similarity=0.208 Sum_probs=67.5
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-.|++.=++..+.+++.+++||+|-+ -.|.-+|.||.. .| ..+.+|.++
T Consensus 209 ~f~PCTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~-----~~-------ATVTicHs~------------ 264 (364)
T PLN02616 209 LFVPCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQR-----ED-------ATVSIVHSR------------ 264 (364)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CC-------CeEEEeCCC------------
Confidence 34567778889999999999999999999985 568888888864 24 246666442
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.++.++|+
T Consensus 265 ------------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK 294 (364)
T PLN02616 265 ------------TKNPEEITRE--ADIIISAVGQPNMVRGSWIK 294 (364)
T ss_pred ------------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcC
Confidence 1357788887 99999999999999999997
No 191
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=80.86 E-value=12 Score=42.33 Aligned_cols=37 Identities=22% Similarity=0.076 Sum_probs=30.0
Q ss_pred eCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHH
Q 007904 479 FVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASE 515 (585)
Q Consensus 479 ~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~ 515 (585)
..||..+|-+.+|.+.=+..+...--++.+.+.++.+
T Consensus 185 d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 185 STPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3578899999999999888888877788887777654
No 192
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=80.75 E-value=2.6 Score=44.21 Aligned_cols=95 Identities=16% Similarity=0.133 Sum_probs=51.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhch--hhc--cc----cCCCCCH
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK--PWA--HE----HEPVNNL 397 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~--~fa--~~----~~~~~~L 397 (585)
.||.|+|+|+.|.++|..|... | .++.++|+..= +.+.+..... .+. .. .....++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G-------~~V~~~~r~~~----~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~ 68 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----G-------VPVRLWARRPE----FAAALAAERENREYLPGVALPAELYPTADP 68 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEeCCHH----HHHHHHHhCcccccCCCCcCCCCeEEeCCH
Confidence 4799999999999999999764 5 34777777311 0001111000 000 00 0112467
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 398 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 398 ~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
.|+++. .|++|=+-. . ...+++++.+. +.-+|+-++|..
T Consensus 69 ~e~~~~--aD~Vi~~v~-~-~~~~~v~~~l~---~~~~vi~~~~Gi 107 (328)
T PRK14618 69 EEALAG--ADFAVVAVP-S-KALRETLAGLP---RALGYVSCAKGL 107 (328)
T ss_pred HHHHcC--CCEEEEECc-h-HHHHHHHHhcC---cCCEEEEEeecc
Confidence 777765 666653222 2 13577776654 334666667753
No 193
>PLN03139 formate dehydrogenase; Provisional
Probab=80.74 E-value=11 Score=41.30 Aligned_cols=143 Identities=16% Similarity=0.080 Sum_probs=83.7
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHH
Q 007904 320 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 399 (585)
Q Consensus 320 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e 399 (585)
+..|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+... . .+ . .+ .. ......+|.|
T Consensus 194 ~~~L~gktVGIVG~G~IG~~vA~~L~af-----G~-------~V~~~d~~~~---~-~~-~--~~-~~--g~~~~~~l~e 251 (386)
T PLN03139 194 AYDLEGKTVGTVGAGRIGRLLLQRLKPF-----NC-------NLLYHDRLKM---D-PE-L--EK-ET--GAKFEEDLDA 251 (386)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHHHC-----CC-------EEEEECCCCc---c-hh-h--Hh-hc--CceecCCHHH
Confidence 4568999999999999999999999753 65 4777887532 0 00 0 00 00 0112347999
Q ss_pred HhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHh-cc-ccCcEEEecCCCCCcce
Q 007904 400 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY-TW-SKGRAIFASGSPFDPFE 473 (585)
Q Consensus 400 ~v~~vkptvLIG~S~----~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~-~w-t~Grai~AsGSPf~pv~ 473 (585)
+++. .|+++=..- .-++|+++.+..|. +.-+++=.|. .++.-|+|+ +. ..|+.-.|..-=|.+--
T Consensus 252 ll~~--sDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~l~GAaLDV~~~EP 322 (386)
T PLN03139 252 MLPK--CDVVVINTPLTEKTRGMFNKERIAKMK---KGVLIVNNAR----GAIMDTQAVADACSSGHIGGYGGDVWYPQP 322 (386)
T ss_pred HHhh--CCEEEEeCCCCHHHHHHhCHHHHhhCC---CCeEEEECCC----CchhhHHHHHHHHHcCCceEEEEcCCCCCC
Confidence 9976 888873321 12689999999995 5556665543 444444443 22 35665555543332111
Q ss_pred eCCeeeCcCCCcccccchhhh
Q 007904 474 YNGKVFVPGQANNAYIFPGFG 494 (585)
Q Consensus 474 ~~G~~~~p~Q~NN~yiFPGig 494 (585)
... ...--+..|..+-|=++
T Consensus 323 lp~-d~pL~~~pNvilTPHia 342 (386)
T PLN03139 323 APK-DHPWRYMPNHAMTPHIS 342 (386)
T ss_pred CCC-CChhhcCCCeEEccccc
Confidence 100 00011235778888776
No 194
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=80.73 E-value=3.3 Score=46.43 Aligned_cols=48 Identities=25% Similarity=0.360 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.|++.+++..|..+++.+++|+|+|.+|.+++..+.+ .|. +++++|+.
T Consensus 317 ~G~~~~l~~~~~~~~~k~vlIiGaGgiG~aia~~L~~-----~G~-------~V~i~~R~ 364 (477)
T PRK09310 317 EGLFSLLKQKNIPLNNQHVAIVGAGGAAKAIATTLAR-----AGA-------ELLIFNRT 364 (477)
T ss_pred HHHHHHHHhcCCCcCCCEEEEEcCcHHHHHHHHHHHH-----CCC-------EEEEEeCC
Confidence 4678888888889999999999999777777776654 362 57777763
No 195
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=80.72 E-value=8.4 Score=40.68 Aligned_cols=100 Identities=24% Similarity=0.364 Sum_probs=63.8
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc-----c-cCC---CC
Q 007904 326 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-----E-HEP---VN 395 (585)
Q Consensus 326 ~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~-----~-~~~---~~ 395 (585)
.||.|+|| |..|..+|..++. .|+ ...++++|++--+ +.+..++.++.+ . ... ..
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~-----~g~-----~~~v~lvd~~~~~-----~~l~~~~~dl~d~~~~~~~~~~i~~~~ 65 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAK-----EDV-----VKEINLISRPKSL-----EKLKGLRLDIYDALAAAGIDAEIKISS 65 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHh-----CCC-----CCEEEEEECcccc-----cccccccchhhhchhccCCCcEEEECC
Confidence 37999998 9999999998775 365 2479999984211 112112211111 0 001 12
Q ss_pred CHHHHhcccCCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 396 NLLDAVKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 396 ~L~e~v~~vkptvLIG~S~~~---g-----------~Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
+. +.+++ .|++|=+.+.+ | .+-+++++.|.+++...+|+--+||.
T Consensus 66 d~-~~l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npv 124 (309)
T cd05294 66 DL-SDVAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPV 124 (309)
T ss_pred CH-HHhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCch
Confidence 43 45766 88887555432 2 24567888899999999999999997
No 196
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=80.06 E-value=8.9 Score=39.89 Aligned_cols=93 Identities=15% Similarity=0.237 Sum_probs=56.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-cCCCCCHHHHhccc-
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVI- 404 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~~~~~~L~e~v~~v- 404 (585)
||.|+|.|..|..+|..|... | .+++++|+.. .+ . ..+... .....++.|+++..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g-------~~v~v~dr~~----~~---~----~~~~~~g~~~~~~~~e~~~~~~ 58 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----G-------HEVVGYDRNP----EA---V----EALAEEGATGADSLEELVAKLP 58 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----C-------CeEEEEECCH----HH---H----HHHHHCCCeecCCHHHHHhhcC
Confidence 799999999999999999763 5 3577787741 11 1 122211 11235777887765
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHc-CCCCcEEEecCCCC
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNPT 443 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma~-~~erPIIFaLSNPt 443 (585)
+||++|=+-. .+...++++..+.. ..+..||+-+|+-.
T Consensus 59 ~~dvvi~~v~-~~~~~~~v~~~l~~~l~~g~ivid~st~~ 97 (301)
T PRK09599 59 APRVVWLMVP-AGEITDATIDELAPLLSPGDIVIDGGNSY 97 (301)
T ss_pred CCCEEEEEec-CCcHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 3776653322 33356667665543 34567888887643
No 197
>PRK06487 glycerate dehydrogenase; Provisional
Probab=80.06 E-value=14 Score=39.26 Aligned_cols=186 Identities=16% Similarity=0.104 Sum_probs=106.8
Q ss_pred CCCeeeccCC---CchHHHHHHHHHHHHHHh------------------------CCCcccceEEEeCcchHHHHHHHHH
Q 007904 292 TTHLVFNDDI---QGTASVVLAGVVAALKLI------------------------GGTLAEHRFLFLGAGEAGTGIAELI 344 (585)
Q Consensus 292 ~~~~~FnDDi---QGTaaV~lAgll~A~r~~------------------------g~~l~d~riv~~GAGsAg~GIA~ll 344 (585)
..+.+.|--- +.+|=-+++.+|+..|-. +..|.++++.|+|.|..|-.+|+++
T Consensus 88 ~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l 167 (317)
T PRK06487 88 RGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA 167 (317)
T ss_pred CCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH
Confidence 4566666322 345556677777766532 2358899999999999999999998
Q ss_pred HHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEec----cCCCCCCC
Q 007904 345 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS----SGVGRTFT 420 (585)
Q Consensus 345 ~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~----S~~~g~Ft 420 (585)
... |+ +++.+|+.+ ..+ . + ...+|.|+++. .|+++=. ...-|.|+
T Consensus 168 ~~f-----gm-------~V~~~~~~~-----~~~---~----~-----~~~~l~ell~~--sDiv~l~lPlt~~T~~li~ 216 (317)
T PRK06487 168 EAF-----GM-------RVLIGQLPG-----RPA---R----P-----DRLPLDELLPQ--VDALTLHCPLTEHTRHLIG 216 (317)
T ss_pred hhC-----CC-------EEEEECCCC-----Ccc---c----c-----cccCHHHHHHh--CCEEEECCCCChHHhcCcC
Confidence 642 65 577777652 101 0 0 12379999987 8988832 22247999
Q ss_pred HHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhc--cccCcEEEecCCCC--CcceeCCeeeCcCCCcccccchhhhHH
Q 007904 421 KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT--WSKGRAIFASGSPF--DPFEYNGKVFVPGQANNAYIFPGFGLG 496 (585)
Q Consensus 421 ~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~--wt~Grai~AsGSPf--~pv~~~G~~~~p~Q~NN~yiFPGiglG 496 (585)
++.+..|. +..++.=.|. .++--|+|+. ..+|+.-.|.=-=| +|.. .+....--+..|+++-|=++-.
T Consensus 217 ~~~~~~mk---~ga~lIN~aR----G~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~-~~~pl~~~~~pnvilTPHia~~ 288 (317)
T PRK06487 217 ARELALMK---PGALLINTAR----GGLVDEQALADALRSGHLGGAATDVLSVEPPV-NGNPLLAPDIPRLIVTPHSAWG 288 (317)
T ss_pred HHHHhcCC---CCeEEEECCC----ccccCHHHHHHHHHcCCeeEEEeecCCCCCCC-CCCchhhcCCCCEEECCccccC
Confidence 99999996 5667775543 4455454442 24566543321111 1111 1111110034588888887722
Q ss_pred HHHhCCcccCHHHHHHHHHHHHccc
Q 007904 497 LVISGAIRVHDDMLLAASEALAKQV 521 (585)
Q Consensus 497 ~l~~~a~~Itd~m~~aAA~aLA~~v 521 (585)
.. .-.+.|...+++.+....
T Consensus 289 t~-----e~~~~~~~~~~~ni~~~~ 308 (317)
T PRK06487 289 SR-----EARQRIVGQLAENARAFF 308 (317)
T ss_pred CH-----HHHHHHHHHHHHHHHHHH
Confidence 21 122344444555554443
No 198
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.79 E-value=11 Score=41.49 Aligned_cols=35 Identities=17% Similarity=0.329 Sum_probs=28.4
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+...||+|+|.|-.|+++|++|.+. |. .+.++|.+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~-----G~-------~V~~~D~~ 46 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKL-----GA-------KVTAFDKK 46 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHC-----CC-------EEEEECCC
Confidence 4567999999999999999998753 63 57888864
No 199
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=79.68 E-value=11 Score=39.72 Aligned_cols=105 Identities=16% Similarity=0.198 Sum_probs=67.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc----cCCCCCHHH
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 399 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~----~~~~~~L~e 399 (585)
.-.++.|+|+|.=|..-+..++.. ..+ ++|.++|+. .++ ...+...+.+. -....+++|
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v----~~i------~~v~v~~r~----~~~---a~~f~~~~~~~~~~~v~~~~~~~e 178 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASV----YNP------KRIRVYSRN----FDH---ARAFAERFSKEFGVDIRPVDNAEA 178 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 468999999999888777766653 244 788888774 222 22333333221 122468999
Q ss_pred HhcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEec-CCCCCcCCCCHHHH
Q 007904 400 AVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEEA 453 (585)
Q Consensus 400 ~v~~vkptvLIG~S~~-~g~Ft~evi~~Ma~~~erPIIFaL-SNPt~~~E~tpeda 453 (585)
+++. .||++-+++. ..+|..++++. .--|-++ |+--.+.|+.++-.
T Consensus 179 av~~--aDIV~taT~s~~P~~~~~~l~p------g~hV~aiGs~~p~~~El~~~~l 226 (301)
T PRK06407 179 ALRD--ADTITSITNSDTPIFNRKYLGD------EYHVNLAGSNYPNRREAEHSVL 226 (301)
T ss_pred HHhc--CCEEEEecCCCCcEecHHHcCC------CceEEecCCCCCCcccCCHHHH
Confidence 9987 9999976532 24788888872 3345554 33235799998743
No 200
>PRK06153 hypothetical protein; Provisional
Probab=79.50 E-value=3.4 Score=45.54 Aligned_cols=161 Identities=14% Similarity=0.241 Sum_probs=86.8
Q ss_pred hhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHHHHH-HHHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceE
Q 007904 250 QEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELL-AKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRF 328 (585)
Q Consensus 250 ~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~lL-~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~ri 328 (585)
..|-++.+++..-+.---||-..|..+ .++.-|+.. ++=.++.-.+-|-.=..+. +.+ .-.+|++.||
T Consensus 111 ~~y~~y~~k~~~Y~~ii~~~A~~~~~~--~~~~~~~~~~~~~~~svf~y~dt~s~R~~--i~~-------~q~kL~~~~V 179 (393)
T PRK06153 111 GGYADYYHKMTTYATIISGPARVLDPT--ASARTFRVIEDAEEDSVFNYPDTASSRAG--IGA-------LSAKLEGQRI 179 (393)
T ss_pred CCcccHHHHHHHHHHHhcchhhhcCCC--CCCcccCCCCCcccCCceehhhhhccccC--hHH-------HHHHHhhCcE
Confidence 457777777777666666664444433 234444422 2211222222221111111 111 1257889999
Q ss_pred EEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc--C---CCCCHHHHhcc
Q 007904 329 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--E---PVNNLLDAVKV 403 (585)
Q Consensus 329 v~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~--~---~~~~L~e~v~~ 403 (585)
+|+|+|..|.-|+++|+.. |+ ++|.++|.+=+ ... +|...---|-.+. . ...-+.+.+..
T Consensus 180 aIVG~GG~GS~Va~~LAR~-----GV------geI~LVD~D~V-e~S---NLnRQ~gaf~~~DvGk~~~KVevaa~rl~~ 244 (393)
T PRK06153 180 AIIGLGGTGSYILDLVAKT-----PV------REIHLFDGDDF-LQH---NAFRSPGAASIEELREAPKKVDYFKSRYSN 244 (393)
T ss_pred EEEcCCccHHHHHHHHHHc-----CC------CEEEEECCCEe-ccc---ccccccccCCHhHcCCcchHHHHHHHHHHH
Confidence 9999999999999999875 87 79999998722 221 2432210121111 1 11236666776
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEe-cCCCC
Q 007904 404 IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA-LSNPT 443 (585)
Q Consensus 404 vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFa-LSNPt 443 (585)
.+|.+ ......++++-+..+. +-.+||- +=|..
T Consensus 245 in~~I----~~~~~~I~~~n~~~L~---~~DiV~dcvDn~~ 278 (393)
T PRK06153 245 MRRGI----VPHPEYIDEDNVDELD---GFTFVFVCVDKGS 278 (393)
T ss_pred hCCeE----EEEeecCCHHHHHHhc---CCCEEEEcCCCHH
Confidence 67754 2334457888777653 5556664 33443
No 201
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=79.43 E-value=28 Score=35.19 Aligned_cols=95 Identities=12% Similarity=0.198 Sum_probs=51.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 406 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkp 406 (585)
||.|+|+|..|..+++-|.+. |.. .+.++++|+. . +........+. ......+..|+++. .
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~-----g~~----~~~i~v~~r~----~---~~~~~l~~~~~-~~~~~~~~~~~~~~--a 62 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTS-----PAD----VSEIIVSPRN----A---QIAARLAERFP-KVRIAKDNQAVVDR--S 62 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhC-----CCC----hheEEEECCC----H---HHHHHHHHHcC-CceEeCCHHHHHHh--C
Confidence 699999999999999988753 542 2456666652 1 11111111110 01112466676665 5
Q ss_pred cEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 407 TILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 407 tvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
|++| ++..+.. -+++++... ..+..+|+..+-++
T Consensus 63 DvVi-lav~p~~-~~~vl~~l~-~~~~~~vis~~ag~ 96 (258)
T PRK06476 63 DVVF-LAVRPQI-AEEVLRALR-FRPGQTVISVIAAT 96 (258)
T ss_pred CEEE-EEeCHHH-HHHHHHHhc-cCCCCEEEEECCCC
Confidence 6555 3332322 356666552 33455777666555
No 202
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=79.24 E-value=3.1 Score=46.60 Aligned_cols=85 Identities=16% Similarity=0.160 Sum_probs=62.3
Q ss_pred eeeecCCCchHHHHHHHHcC-CCe--eeccCCCchHHHHHHHHHHHHHHhC--------CCcccceEEEeCcchHHHHHH
Q 007904 273 IQFEDFANHNAFELLAKYGT-THL--VFNDDIQGTASVVLAGVVAALKLIG--------GTLAEHRFLFLGAGEAGTGIA 341 (585)
Q Consensus 273 Iq~EDf~~~~af~lL~ryr~-~~~--~FnDDiQGTaaV~lAgll~A~r~~g--------~~l~d~riv~~GAGsAg~GIA 341 (585)
|.+|=+....-.++.++|.- .+| ++|++....|....+-++..++... ....+-.+||+|||.||+..|
T Consensus 148 i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGpaGl~aA 227 (517)
T PRK15317 148 ITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAAA 227 (517)
T ss_pred ceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCCCCEEEECCCHHHHHHH
Confidence 55666666777788999974 444 4677778888888889998887532 123456899999999999999
Q ss_pred HHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 342 ELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 342 ~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
..+.. .|+ ++.++|.+
T Consensus 228 ~~la~-----~G~-------~v~li~~~ 243 (517)
T PRK15317 228 IYAAR-----KGI-------RTGIVAER 243 (517)
T ss_pred HHHHH-----CCC-------cEEEEecC
Confidence 88865 374 46666654
No 203
>PRK07340 ornithine cyclodeaminase; Validated
Probab=79.23 E-value=14 Score=38.93 Aligned_cols=104 Identities=10% Similarity=0.101 Sum_probs=63.7
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCC--CCCHHHH
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP--VNNLLDA 400 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~--~~~L~e~ 400 (585)
....+++|+|+|..|...+..+... .++ ++|+++|+. ..+ ...+...+...... ..++.|+
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~a~~~~~~~~~~~~~~~~~a 185 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAG----LPV------RRVWVRGRT----AAS---AAAFCAHARALGPTAEPLDGEAI 185 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHh----CCC------CEEEEEcCC----HHH---HHHHHHHHHhcCCeeEECCHHHH
Confidence 3568999999999998888877653 244 678888874 221 12222222111111 3578899
Q ss_pred hcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEecCCCC-CcCCCCHHH
Q 007904 401 VKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEE 452 (585)
Q Consensus 401 v~~vkptvLIG~S~~~-g~Ft~evi~~Ma~~~erPIIFaLSNPt-~~~E~tped 452 (585)
+++ .|++|-++... .+|+. +++ +.--|-++.-.+ .+.|+.+|-
T Consensus 186 v~~--aDiVitaT~s~~Pl~~~-~~~------~g~hi~~iGs~~p~~~El~~~~ 230 (304)
T PRK07340 186 PEA--VDLVVTATTSRTPVYPE-AAR------AGRLVVAVGAFTPDMAELAPRT 230 (304)
T ss_pred hhc--CCEEEEccCCCCceeCc-cCC------CCCEEEecCCCCCCcccCCHHH
Confidence 975 99999876543 35554 332 444666665422 468888763
No 204
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=79.10 E-value=19 Score=37.50 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcC
Q 007904 311 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 368 (585)
Q Consensus 311 gll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 368 (585)
..+.|++..+.. .+++++|.|+|+.|...+.+... .|. ++++.+|+
T Consensus 157 ~a~~al~~~~~~-~g~~VlV~G~G~vG~~aiqlak~-----~G~------~~Vi~~~~ 202 (343)
T PRK09880 157 VAIHAAHQAGDL-QGKRVFVSGVGPIGCLIVAAVKT-----LGA------AEIVCADV 202 (343)
T ss_pred HHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHH-----cCC------cEEEEEeC
Confidence 335556554433 68899999998777655544332 364 57887775
No 205
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=79.08 E-value=13 Score=39.64 Aligned_cols=105 Identities=14% Similarity=0.115 Sum_probs=66.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc---CCCCCHHHH
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 400 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~---~~~~~L~e~ 400 (585)
.-.++.|+|+|.-|-..++.+... . . -++++++|+. .++ ...+...+.+.. ....+..|+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~--~--~------~~~v~V~~r~----~~~---~~~~~~~~~~~g~~v~~~~~~~ea 189 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRV--F--D------LEEVSVYCRT----PST---REKFALRASDYEVPVRAATDPREA 189 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc--C--C------CCEEEEECCC----HHH---HHHHHHHHHhhCCcEEEeCCHHHH
Confidence 458899999999876655444331 1 2 3789998873 222 222222222111 124689999
Q ss_pred hcccCCcEEEecc-CCCCCCCHHHHHHHHcCCCCcEEEecCCCC-CcCCCCHHHH
Q 007904 401 VKVIKPTILIGSS-GVGRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEA 453 (585)
Q Consensus 401 v~~vkptvLIG~S-~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt-~~~E~tpeda 453 (585)
++. .|++|-++ +....|..++++ +..-|-++.-.+ .+.|+.++-.
T Consensus 190 v~~--aDiVitaT~s~~P~~~~~~l~------~g~~v~~vGs~~p~~~Eld~~~l 236 (325)
T TIGR02371 190 VEG--CDILVTTTPSRKPVVKADWVS------EGTHINAIGADAPGKQELDPEIL 236 (325)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCcccccCCHHHH
Confidence 986 99999665 333478888885 566788887544 3689998643
No 206
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=78.87 E-value=5.1 Score=42.57 Aligned_cols=131 Identities=19% Similarity=0.342 Sum_probs=80.3
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC-cccCCCccCCchhchhhccccCC--CCC
Q 007904 320 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG-LIVSSRKDSLQHFKKPWAHEHEP--VNN 396 (585)
Q Consensus 320 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G-Li~~~r~~~l~~~k~~fa~~~~~--~~~ 396 (585)
-++.+..||.++|+|..|+.+|-.|+.- |++ +++.++|-.= .+--..+| |+ |-.+|-+...- .++
T Consensus 15 ~~~~~~~KItVVG~G~VGmAca~siL~k-----~La-----del~lvDv~~dklkGE~MD-Lq-H~s~f~~~~~V~~~~D 82 (332)
T KOG1495|consen 15 EKEFKHNKITVVGVGQVGMACAISILLK-----GLA-----DELVLVDVNEDKLKGEMMD-LQ-HGSAFLSTPNVVASKD 82 (332)
T ss_pred cccccCceEEEEccchHHHHHHHHHHHh-----hhh-----hceEEEecCcchhhhhhhh-hc-cccccccCCceEecCc
Confidence 3456688999999999999999888763 773 6788999642 11111222 43 44455543111 122
Q ss_pred HHHHhcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhcccc----
Q 007904 397 LLDAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK---- 458 (585)
Q Consensus 397 L~e~v~~vkptvLIG~S~~~g~--------------Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~---- 458 (585)
.. +-. ..++.|=+.+..+. .=+.+|....++.+.-|+.-.|||. |.++|--
T Consensus 83 y~-~sa--~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPV--------DilTYv~wKLS 151 (332)
T KOG1495|consen 83 YS-VSA--NSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPV--------DILTYVTWKLS 151 (332)
T ss_pred cc-ccC--CCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCch--------HHHHHHHHHHc
Confidence 21 111 24555534333221 2256788889999999999999999 7776621
Q ss_pred ---CcEEEecCCCCCcce
Q 007904 459 ---GRAIFASGSPFDPFE 473 (585)
Q Consensus 459 ---Grai~AsGSPf~pv~ 473 (585)
-..+|.||.-.+...
T Consensus 152 gfP~nRViGsGcnLDsaR 169 (332)
T KOG1495|consen 152 GFPKNRVIGSGCNLDSAR 169 (332)
T ss_pred CCcccceeccCcCccHHH
Confidence 124667777666554
No 207
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=78.87 E-value=8.5 Score=38.37 Aligned_cols=148 Identities=14% Similarity=0.185 Sum_probs=76.5
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhh-hcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHh
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE-TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 401 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~ee-A~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v 401 (585)
..++||.|+|.|..+. +|.-+...|.. ++..+- +..-+.+.|..-+++.-- +-..+-.-|++. |.-..
T Consensus 39 ~~~~rI~~~G~GgSa~-~A~~~a~~l~~--~~~~~r~gl~a~~l~~d~~~~ta~a--nd~~~~~~f~~q------l~~~~ 107 (196)
T PRK10886 39 LNGNKILCCGNGTSAA-NAQHFAASMIN--RFETERPSLPAIALNTDNVVLTAIA--NDRLHDEVYAKQ------VRALG 107 (196)
T ss_pred HcCCEEEEEECcHHHH-HHHHHHHHHhc--cccccCCCcceEEecCcHHHHHHHh--ccccHHHHHHHH------HHHcC
Confidence 3679999999998874 77777766542 110000 012222323222222110 011233344442 32222
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCc
Q 007904 402 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVP 481 (585)
Q Consensus 402 ~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Grai~AsGSPf~pv~~~G~~~~p 481 (585)
-+-|++|+.|..|. |+++++.+. -|.+ .+-+.|.-||.+-.|+ .-..
T Consensus 108 --~~gDvli~iS~SG~--s~~v~~a~~-----------------------~Ak~-~G~~vI~IT~~~~s~l-----~~l~ 154 (196)
T PRK10886 108 --HAGDVLLAISTRGN--SRDIVKAVE-----------------------AAVT-RDMTIVALTGYDGGEL-----AGLL 154 (196)
T ss_pred --CCCCEEEEEeCCCC--CHHHHHHHH-----------------------HHHH-CCCEEEEEeCCCCChh-----hhcc
Confidence 35799999999887 899998773 2222 1224444565443333 1112
Q ss_pred CCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHHcccC
Q 007904 482 GQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVT 522 (585)
Q Consensus 482 ~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA~~v~ 522 (585)
+.++=....|.-- ..+-.++-+..-+.|.+++.
T Consensus 155 ~~~D~~i~ip~~~--------~~~v~e~h~~i~H~l~~~v~ 187 (196)
T PRK10886 155 GPQDVEIRIPSHR--------SARIQEMHMLTVNCLCDLID 187 (196)
T ss_pred ccCCEEEEcCCCc--------hHHHHHHHHHHHHHHHHHHH
Confidence 2344455555322 23456677777888887773
No 208
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=78.82 E-value=17 Score=36.76 Aligned_cols=47 Identities=34% Similarity=0.425 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcC
Q 007904 310 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 368 (585)
Q Consensus 310 Agll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 368 (585)
+..+.|++..+.. .+.+++|+|+|+.|.-.+.+.. + .|. ++++.+|+
T Consensus 107 ~ta~~al~~~~~~-~g~~VlV~G~G~vG~~~~~~ak-~----~G~------~~Vi~~~~ 153 (280)
T TIGR03366 107 ATVMAALEAAGDL-KGRRVLVVGAGMLGLTAAAAAA-A----AGA------ARVVAADP 153 (280)
T ss_pred HHHHHHHHhccCC-CCCEEEEECCCHHHHHHHHHHH-H----cCC------CEEEEECC
Confidence 3445566655543 7889999999876655444332 2 364 56887764
No 209
>PRK07680 late competence protein ComER; Validated
Probab=78.50 E-value=4.5 Score=41.33 Aligned_cols=98 Identities=12% Similarity=0.232 Sum_probs=58.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 406 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkp 406 (585)
+|.|+|+|..|..+|..|.+. |.- ...+++++|++ . +........|. ......+..++++. +
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~-----g~~---~~~~v~v~~r~----~---~~~~~~~~~~~-g~~~~~~~~~~~~~--a 63 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES-----GAV---KPSQLTITNRT----P---AKAYHIKERYP-GIHVAKTIEEVISQ--S 63 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC-----CCC---CcceEEEECCC----H---HHHHHHHHHcC-CeEEECCHHHHHHh--C
Confidence 699999999999999888653 420 12468888774 1 11111111110 00112467777765 7
Q ss_pred cEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCCC
Q 007904 407 TILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPTS 444 (585)
Q Consensus 407 tvLIG~S~~~g~Ft~evi~~Ma~~~-erPIIFaLSNPt~ 444 (585)
|++| ++..+ ...+++++.++.+- +..+|..++|+.+
T Consensus 64 DiVi-lav~p-~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 64 DLIF-ICVKP-LDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred CEEE-EecCH-HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 8776 33333 34678888887543 4568889998763
No 210
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=78.49 E-value=6.3 Score=41.48 Aligned_cols=126 Identities=21% Similarity=0.323 Sum_probs=72.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccC-CCCCHHHHhcccC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE-PVNNLLDAVKVIK 405 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~-~~~~L~e~v~~vk 405 (585)
||.|+|+|..|..+|..+.. .|+ ...++++|++-=...+...++.+. .+|..+.. ...+. +.+++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~-----~g~-----~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~~~i~~~d~-~~l~~-- 67 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL-----RGL-----ASEIVLVDINKAKAEGEAMDLAHG-TPFVKPVRIYAGDY-ADCKG-- 67 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH-----cCC-----CCEEEEEECCchhhhhHHHHHHcc-ccccCCeEEeeCCH-HHhCC--
Confidence 79999999999999988765 265 367999997410011000012111 11211100 01344 55665
Q ss_pred CcEEEeccCCCCCC--------------CHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhcccc--CcEEEecCCCC
Q 007904 406 PTILIGSSGVGRTF--------------TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFASGSPF 469 (585)
Q Consensus 406 ptvLIG~S~~~g~F--------------t~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~--Grai~AsGSPf 469 (585)
.|++|=+.+.+..- =+++++.+.+++..-+|+-.+||. +....-+++.+. -+-+|++|.-.
T Consensus 68 aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~---d~~~~~~~~~sg~p~~~viG~gt~L 144 (308)
T cd05292 68 ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPV---DVLTYVAYKLSGLPPNRVIGSGTVL 144 (308)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHeecccchh
Confidence 78777444433111 246888888899999999999996 444444555431 13367776544
No 211
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=78.46 E-value=6.6 Score=44.39 Aligned_cols=103 Identities=18% Similarity=0.143 Sum_probs=55.2
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC---cCCC-----CHHHHhccccCcEEE-ecCCCCCccee
Q 007904 404 IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS---QSEC-----TAEEAYTWSKGRAIF-ASGSPFDPFEY 474 (585)
Q Consensus 404 vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~---~~E~-----tpeda~~wt~Grai~-AsGSPf~pv~~ 474 (585)
.+|+++|...+. .++.+-+..-.++-+|=+-+-.-||.. +.|+ |.++++++.. .++ .-|. .||..
T Consensus 112 ~~~~ailasntS--tl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts~~~~~~~~--~l~~~lgk--~pv~v 185 (507)
T PRK08268 112 VSPDCILATNTS--SLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALY--ALARAWGK--TPVRA 185 (507)
T ss_pred CCCCcEEEECCC--CCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCCCHHHHHHHH--HHHHHcCC--ceEEe
Confidence 478888874332 234443333333334446777778653 2232 3344444311 000 1111 22222
Q ss_pred CCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHH
Q 007904 475 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASE 515 (585)
Q Consensus 475 ~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~ 515 (585)
+ ..||-.+|-..+|.+.=+..+...--++.+-+..+.+
T Consensus 186 ~---d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~ 223 (507)
T PRK08268 186 K---DTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILR 223 (507)
T ss_pred c---CCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 1 3477899999999888888877766676666666543
No 212
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=78.42 E-value=4.1 Score=37.21 Aligned_cols=96 Identities=18% Similarity=0.188 Sum_probs=52.0
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhccc
Q 007904 326 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 404 (585)
Q Consensus 326 ~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~v 404 (585)
.||+++|+ |-.|-.|++.+.+. .|+ +=...+|++.=-..+. ++...-.......+-..+|.++++.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~----~~~------~lv~~v~~~~~~~~g~--d~g~~~~~~~~~~~v~~~l~~~~~~- 67 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES----PGF------ELVGAVDRKPSAKVGK--DVGELAGIGPLGVPVTDDLEELLEE- 67 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS----TTE------EEEEEEETTTSTTTTS--BCHHHCTSST-SSBEBS-HHHHTTH-
T ss_pred CEEEEECCCCHHHHHHHHHHHhc----CCc------EEEEEEecCCcccccc--hhhhhhCcCCcccccchhHHHhccc-
Confidence 38999999 99999999988763 354 4467788876111111 1111000000011112578888877
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEe
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 438 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFa 438 (585)
+||+|=+|.+. ...+.++...++ ..|+|..
T Consensus 68 -~DVvIDfT~p~--~~~~~~~~~~~~-g~~~ViG 97 (124)
T PF01113_consen 68 -ADVVIDFTNPD--AVYDNLEYALKH-GVPLVIG 97 (124)
T ss_dssp --SEEEEES-HH--HHHHHHHHHHHH-T-EEEEE
T ss_pred -CCEEEEcCChH--HhHHHHHHHHhC-CCCEEEE
Confidence 88888877543 244555555544 5555554
No 213
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=77.99 E-value=3.6 Score=38.73 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=25.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
+|||+|+|.||+..|..|.. .| .++.++|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-----~~-------~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-----PG-------AKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----TT-------SEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhc-----CC-------CeEEEEeccc
Confidence 69999999999999999983 24 5688886643
No 214
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.93 E-value=14 Score=39.45 Aligned_cols=84 Identities=19% Similarity=0.307 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch
Q 007904 304 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 382 (585)
Q Consensus 304 TaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~ 382 (585)
-.-+|-.|++.=++..|.+++.+++|++|.+ ..|.-+|.||.. .|. .+.+|.|+
T Consensus 137 ~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~-----~~a-------tVtv~hs~------------- 191 (297)
T PRK14186 137 LRSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLA-----ANA-------TVTIAHSR------------- 191 (297)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC-------------
Confidence 3467788889999999999999999999986 578888888864 242 35555432
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 383 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 383 ~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.|+.++|+
T Consensus 192 -----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (297)
T PRK14186 192 -----------TQDLASITRE--ADILVAAAGRPNLIGAEMVK 221 (297)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1357788887 99999999999999999997
No 215
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=77.64 E-value=14 Score=39.44 Aligned_cols=141 Identities=13% Similarity=0.180 Sum_probs=84.5
Q ss_pred CCCeeeccCC---CchHHHHHHHHHHHHHH---------------------hCCCcccceEEEeCcchHHHHHHHHHHHH
Q 007904 292 TTHLVFNDDI---QGTASVVLAGVVAALKL---------------------IGGTLAEHRFLFLGAGEAGTGIAELIALE 347 (585)
Q Consensus 292 ~~~~~FnDDi---QGTaaV~lAgll~A~r~---------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~ 347 (585)
..+++.|--- ..+|=-+++.+|+.+|- .|..|.++++.|+|.|..|..+|+.+..+
T Consensus 88 ~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~ 167 (323)
T PRK15409 88 RKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFG 167 (323)
T ss_pred CCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHHhc
Confidence 3555555322 23455567777777663 14568999999999999999999987533
Q ss_pred HHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHH
Q 007904 348 ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEV 423 (585)
Q Consensus 348 ~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~ev 423 (585)
+ |+ ++...|+.. . + .....+ .....+|.|+++. .|+++=.- ..-|+|+++.
T Consensus 168 f----gm-------~V~~~~~~~----~--~---~~~~~~---~~~~~~l~ell~~--sDvv~lh~plt~~T~~li~~~~ 222 (323)
T PRK15409 168 F----NM-------PILYNARRH----H--K---EAEERF---NARYCDLDTLLQE--SDFVCIILPLTDETHHLFGAEQ 222 (323)
T ss_pred C----CC-------EEEEECCCC----c--h---hhHHhc---CcEecCHHHHHHh--CCEEEEeCCCChHHhhccCHHH
Confidence 3 65 455566531 0 0 000011 0112479999987 88877321 1237899999
Q ss_pred HHHHHcCCCCcEEEecCCCCCcCCCCHHHHh-cc-ccCcEEEe
Q 007904 424 IEAMASFNEKPLILALSNPTSQSECTAEEAY-TW-SKGRAIFA 464 (585)
Q Consensus 424 i~~Ma~~~erPIIFaLSNPt~~~E~tpeda~-~w-t~Grai~A 464 (585)
++.|. +.-++.=.| +.++--|+|+ ++ .+|+.-.|
T Consensus 223 l~~mk---~ga~lIN~a----RG~vVde~AL~~AL~~g~i~gA 258 (323)
T PRK15409 223 FAKMK---SSAIFINAG----RGPVVDENALIAALQKGEIHAA 258 (323)
T ss_pred HhcCC---CCeEEEECC----CccccCHHHHHHHHHcCCeeEE
Confidence 99996 555666544 4555555444 22 45665433
No 216
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=77.22 E-value=34 Score=37.78 Aligned_cols=192 Identities=15% Similarity=0.169 Sum_probs=113.2
Q ss_pred HcCCCeeeccCCC---chHHHHHHHHHHHHHH------------------hCCCcccceEEEeCcchHHHHHHHHHHHHH
Q 007904 290 YGTTHLVFNDDIQ---GTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEI 348 (585)
Q Consensus 290 yr~~~~~FnDDiQ---GTaaV~lAgll~A~r~------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~ 348 (585)
-+..++++|---- .+|=-+++.+|+.+|- .|..|.+.++.|+|.|..|..+|+.+...
T Consensus 95 ~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~f- 173 (409)
T PRK11790 95 AKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESL- 173 (409)
T ss_pred HhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHHHHHHHHHC-
Confidence 3468999985322 3455568888888763 24568999999999999999999988643
Q ss_pred HhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHH
Q 007904 349 SKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVI 424 (585)
Q Consensus 349 ~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi 424 (585)
|+ +++.+|+.. . .... .. ....+|.|+++. .|+++=.- ..-++|+++.+
T Consensus 174 ----Gm-------~V~~~d~~~-----~-~~~~-----~~---~~~~~l~ell~~--sDiVslh~Plt~~T~~li~~~~l 226 (409)
T PRK11790 174 ----GM-------RVYFYDIED-----K-LPLG-----NA---RQVGSLEELLAQ--SDVVSLHVPETPSTKNMIGAEEL 226 (409)
T ss_pred ----CC-------EEEEECCCc-----c-cccC-----Cc---eecCCHHHHHhh--CCEEEEcCCCChHHhhccCHHHH
Confidence 75 578888631 0 0010 01 123479999987 88877321 11268999999
Q ss_pred HHHHcCCCCcEEEecCCCCCcCCCCHHHHhc--cccCcEEEecCCC-C--CcceeCCe-eeCcCCCcccccchhhhHHHH
Q 007904 425 EAMASFNEKPLILALSNPTSQSECTAEEAYT--WSKGRAIFASGSP-F--DPFEYNGK-VFVPGQANNAYIFPGFGLGLV 498 (585)
Q Consensus 425 ~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~--wt~Grai~AsGSP-f--~pv~~~G~-~~~p~Q~NN~yiFPGiglG~l 498 (585)
..|. +.-++.-.|. .++-=|+|+. ...|+ |.+.|.- | +|..-+.. ...--+..|+++-|=+|-...
T Consensus 227 ~~mk---~ga~lIN~aR----G~~vde~aL~~aL~~g~-i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ 298 (409)
T PRK11790 227 ALMK---PGAILINASR----GTVVDIDALADALKSGH-LAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQ 298 (409)
T ss_pred hcCC---CCeEEEECCC----CcccCHHHHHHHHHcCC-ceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHH
Confidence 9996 5567765554 4444444431 13566 3333221 2 22211100 001123468999999885433
Q ss_pred HhCCcccCHHHHHHHHHHHHcccC
Q 007904 499 ISGAIRVHDDMLLAASEALAKQVT 522 (585)
Q Consensus 499 ~~~a~~Itd~m~~aAA~aLA~~v~ 522 (585)
-+ ...|...+++.+.....
T Consensus 299 ea-----~~~~~~~~~~nl~~~~~ 317 (409)
T PRK11790 299 EA-----QENIGLEVAGKLVKYSD 317 (409)
T ss_pred HH-----HHHHHHHHHHHHHHHHc
Confidence 22 23455556666655544
No 217
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=77.14 E-value=12 Score=39.30 Aligned_cols=106 Identities=13% Similarity=0.229 Sum_probs=60.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcC-CChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhccc
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTK-APVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 404 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~G-ls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~v 404 (585)
.||.|+|+|..|-.|+.-|++. | +. ..+|+++|+. .+........|--. ...+..++++.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~-----g~~~----~~~I~v~~~~-------~e~~~~l~~~~g~~--~~~~~~~~~~~- 62 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKS-----GALP----PEEIIVTNRS-------EEKRAALAAEYGVV--TTTDNQEAVEE- 62 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhc-----CCCC----cceEEEeCCC-------HHHHHHHHHHcCCc--ccCcHHHHHhh-
Confidence 5899999999998888877764 5 32 4678877763 11122223333111 13455566665
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhcccc
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK 458 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~ 458 (585)
.|+++ ++-.| -.=+++++.+....+..+|..+. |=.+.++.-.|.+
T Consensus 63 -advv~-LavKP-q~~~~vl~~l~~~~~~~lvISia-----AGv~~~~l~~~l~ 108 (266)
T COG0345 63 -ADVVF-LAVKP-QDLEEVLSKLKPLTKDKLVISIA-----AGVSIETLERLLG 108 (266)
T ss_pred -CCEEE-EEeCh-HhHHHHHHHhhcccCCCEEEEEe-----CCCCHHHHHHHcC
Confidence 66666 44444 23345666665444555666555 3334555555543
No 218
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=76.86 E-value=2.1 Score=48.60 Aligned_cols=38 Identities=26% Similarity=0.441 Sum_probs=33.1
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCc
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 371 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 371 (585)
+++.|++++|||+-|++||+-|+.. |+ ++|.+||.--.
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~W-----Gv------RhITFvDn~kV 375 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDNGKV 375 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhh-----cc------ceEEEEecCee
Confidence 4678999999999999999999987 76 89999997533
No 219
>PRK06823 ornithine cyclodeaminase; Validated
Probab=76.77 E-value=17 Score=38.68 Aligned_cols=105 Identities=10% Similarity=0.113 Sum_probs=67.8
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc---cCCCCCHHHH
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLDA 400 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~---~~~~~~L~e~ 400 (585)
.-.++.++|+|.-+-..++.++.. ..+ ++|+++|+. ..+ ...+.....+. .....+.+|+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v----~~i------~~v~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~a 189 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNV----TDC------RQLWVWGRS----ETA---LEEYRQYAQALGFAVNTTLDAAEV 189 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HHH---HHHHHHHHHhcCCcEEEECCHHHH
Confidence 457999999999988887776653 133 788988874 222 22222212111 1113689999
Q ss_pred hcccCCcEEEeccC-CCCCCCHHHHHHHHcCCCCcEEEecCCCC-CcCCCCHHHH
Q 007904 401 VKVIKPTILIGSSG-VGRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEA 453 (585)
Q Consensus 401 v~~vkptvLIG~S~-~~g~Ft~evi~~Ma~~~erPIIFaLSNPt-~~~E~tpeda 453 (585)
++. .|+++-+++ ...+|..++++ +.-.|-+...-+ .+.|+.++-.
T Consensus 190 v~~--ADIV~taT~s~~P~~~~~~l~------~G~hi~~iGs~~p~~~Eld~~~l 236 (315)
T PRK06823 190 AHA--ANLIVTTTPSREPLLQAEDIQ------PGTHITAVGADSPGKQELDAELV 236 (315)
T ss_pred hcC--CCEEEEecCCCCceeCHHHcC------CCcEEEecCCCCcccccCCHHHH
Confidence 987 999997643 23478888887 555677776433 4689998654
No 220
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=76.74 E-value=35 Score=38.86 Aligned_cols=195 Identities=14% Similarity=0.113 Sum_probs=110.5
Q ss_pred CCCeeeccCC---CchHHHHHHHHHHHHHH------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHh
Q 007904 292 TTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 350 (585)
Q Consensus 292 ~~~~~FnDDi---QGTaaV~lAgll~A~r~------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~ 350 (585)
..+++.|-.- +.+|=-+++-+|+..|- .|..|.++++.|+|.|..|..+|+.+...
T Consensus 86 ~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 162 (526)
T PRK13581 86 RGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAF--- 162 (526)
T ss_pred CCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 4566666421 12455567777777664 24568899999999999999999998753
Q ss_pred hcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHHH
Q 007904 351 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEA 426 (585)
Q Consensus 351 ~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~Ft~evi~~ 426 (585)
|+ +++.+|+.. .+ +... .+ . -...+|.|+++. .|+++=.-. .-++|+++.+..
T Consensus 163 --G~-------~V~~~d~~~----~~-~~~~----~~--g-~~~~~l~ell~~--aDiV~l~lP~t~~t~~li~~~~l~~ 219 (526)
T PRK13581 163 --GM-------KVIAYDPYI----SP-ERAA----QL--G-VELVSLDELLAR--ADFITLHTPLTPETRGLIGAEELAK 219 (526)
T ss_pred --CC-------EEEEECCCC----Ch-hHHH----hc--C-CEEEcHHHHHhh--CCEEEEccCCChHhhcCcCHHHHhc
Confidence 65 688888742 11 0000 01 0 011268899886 888774321 236899999999
Q ss_pred HHcCCCCcEEEecCCCCCcCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccC
Q 007904 427 MASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVH 506 (585)
Q Consensus 427 Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~It 506 (585)
|. +..++.=.|.-.---|.---+|+ ..|+.-.|.=-=|++--..... -=+..|+.+-|=+|-....+ .
T Consensus 220 mk---~ga~lIN~aRG~~vde~aL~~aL--~~g~i~gAaLDVf~~EP~~~~p--L~~~~nvilTPHia~~t~e~-----~ 287 (526)
T PRK13581 220 MK---PGVRIINCARGGIIDEAALAEAL--KSGKVAGAALDVFEKEPPTDSP--LFELPNVVVTPHLGASTAEA-----Q 287 (526)
T ss_pred CC---CCeEEEECCCCceeCHHHHHHHH--hcCCeeEEEEecCCCCCCCCch--hhcCCCeeEcCccccchHHH-----H
Confidence 96 66777766654432232222333 3566533311111100000111 11345889999887433322 2
Q ss_pred HHHHHHHHHHHHcccCcc
Q 007904 507 DDMLLAASEALAKQVTEE 524 (585)
Q Consensus 507 d~m~~aAA~aLA~~v~~~ 524 (585)
..|...+++.+......+
T Consensus 288 ~~~~~~~~~ni~~~~~g~ 305 (526)
T PRK13581 288 ENVAIQVAEQVIDALRGG 305 (526)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 445555666666655433
No 221
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=76.60 E-value=10 Score=41.32 Aligned_cols=85 Identities=16% Similarity=0.193 Sum_probs=66.7
Q ss_pred chHHHHHHHHHHHHHHhCCCcccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc
Q 007904 303 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 381 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~g~~l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~ 381 (585)
+-.-+|-.|++.=++..|.+++.+++||+|-+ ..|.-+|.||.. .|. .+.+|.++
T Consensus 192 ~~~PCTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~-----~~A-------TVTicHs~------------ 247 (345)
T PLN02897 192 LFVSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQR-----HDA-------TVSTVHAF------------ 247 (345)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHH-----CCC-------EEEEEcCC------------
Confidence 34567788888889999999999999999976 568888887764 242 35555442
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 007904 382 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 425 (585)
Q Consensus 382 ~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~ 425 (585)
..+|.+.+++ +|++|-..+.++.|+.++|+
T Consensus 248 ------------T~nl~~~~~~--ADIvIsAvGkp~~v~~d~vk 277 (345)
T PLN02897 248 ------------TKDPEQITRK--ADIVIAAAGIPNLVRGSWLK 277 (345)
T ss_pred ------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1247788887 99999999999999999997
No 222
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=76.55 E-value=12 Score=38.91 Aligned_cols=93 Identities=14% Similarity=0.191 Sum_probs=56.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-cCCCCCHHHHhcccC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVIK 405 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~~~~~~L~e~v~~vk 405 (585)
+|.|+|.|..|..+|.-|... |. +++++|++. ++ .. .++.. .....++.|+++..+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-----g~-------~v~v~dr~~----~~---~~----~~~~~g~~~~~s~~~~~~~~~ 58 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-----GH-------EVVGYDVNQ----EA---VD----VAGKLGITARHSLEELVSKLE 58 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECCH----HH---HH----HHHHCCCeecCCHHHHHHhCC
Confidence 699999999999999998753 53 577777641 11 11 12111 122357888887643
Q ss_pred -CcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCC
Q 007904 406 -PTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 443 (585)
Q Consensus 406 -ptvLIG~S~~~g~Ft~evi~~Ma~~-~erPIIFaLSNPt 443 (585)
+|++|=+ .+.....++++..+... .+..+|.=+|+-.
T Consensus 59 ~advVi~~-vp~~~~~~~v~~~i~~~l~~g~ivid~st~~ 97 (299)
T PRK12490 59 APRTIWVM-VPAGEVTESVIKDLYPLLSPGDIVVDGGNSR 97 (299)
T ss_pred CCCEEEEE-ecCchHHHHHHHHHhccCCCCCEEEECCCCC
Confidence 5666532 22333566776665443 4567888887644
No 223
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=76.52 E-value=4.3 Score=41.16 Aligned_cols=56 Identities=27% Similarity=0.366 Sum_probs=43.2
Q ss_pred HHHHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEE
Q 007904 287 LAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 366 (585)
Q Consensus 287 L~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lv 366 (585)
++||..++....-.. +- -++|++-|++++|+|.-|.-++..|+.+ |+ ++++++
T Consensus 8 ~~ry~Rqi~l~~~~~---------------~~-q~~l~~s~vlvvG~GglG~~~~~~la~a-----Gv------g~l~i~ 60 (254)
T COG0476 8 IERYSRQILLPGIGG---------------EG-QQKLKDSRVLVVGAGGLGSPAAKYLALA-----GV------GKLTIV 60 (254)
T ss_pred HHhhcceeeecccCH---------------HH-HHHHhhCCEEEEecChhHHHHHHHHHHc-----CC------CeEEEE
Confidence 467777766654443 12 4678899999999999999999988875 76 669999
Q ss_pred cCC
Q 007904 367 DSK 369 (585)
Q Consensus 367 D~~ 369 (585)
|.+
T Consensus 61 D~d 63 (254)
T COG0476 61 DFD 63 (254)
T ss_pred cCC
Confidence 986
No 224
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=76.50 E-value=4 Score=44.13 Aligned_cols=106 Identities=23% Similarity=0.390 Sum_probs=70.4
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc----cCCCCCHH
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLL 398 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~----~~~~~~L~ 398 (585)
...-+|+++|.|-+|+--|++.+ |+. .++.+.|.+ .+| |....-.|..+ ......++
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~-------glg-----A~Vtild~n----~~r---l~~ldd~f~~rv~~~~st~~~ie 226 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI-------GLG-----ADVTILDLN----IDR---LRQLDDLFGGRVHTLYSTPSNIE 226 (371)
T ss_pred CCCccEEEECCccccchHHHHHh-------ccC-----CeeEEEecC----HHH---HhhhhHhhCceeEEEEcCHHHHH
Confidence 56789999999999999888765 442 467778764 232 33333334422 12234688
Q ss_pred HHhcccCCcEEEec-----cCCCCCCCHHHHHHHHcCCCCcEE----------EecCCCCCcCCCCHHH
Q 007904 399 DAVKVIKPTILIGS-----SGVGRTFTKEVIEAMASFNEKPLI----------LALSNPTSQSECTAEE 452 (585)
Q Consensus 399 e~v~~vkptvLIG~-----S~~~g~Ft~evi~~Ma~~~erPII----------FaLSNPt~~~E~tped 452 (585)
|++++ .|.+||. +..|.+.|+++++.|. +--+| |-=|.||+..+-|.++
T Consensus 227 e~v~~--aDlvIgaVLIpgakaPkLvt~e~vk~Mk---pGsVivDVAiDqGGc~Et~~~TTh~~PtY~~ 290 (371)
T COG0686 227 EAVKK--ADLVIGAVLIPGAKAPKLVTREMVKQMK---PGSVIVDVAIDQGGCFETSHPTTHDDPTYEV 290 (371)
T ss_pred HHhhh--ccEEEEEEEecCCCCceehhHHHHHhcC---CCcEEEEEEEcCCCceeccccccCCCCceee
Confidence 99986 9998887 4556789999999996 33333 4455666666555543
No 225
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=75.85 E-value=12 Score=39.76 Aligned_cols=119 Identities=17% Similarity=0.245 Sum_probs=84.0
Q ss_pred CceeeeeecCCCchHHHHHHHHc--CCCeeecc--------CCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcch-HH
Q 007904 269 EKVLIQFEDFANHNAFELLAKYG--TTHLVFND--------DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AG 337 (585)
Q Consensus 269 p~~lIq~EDf~~~~af~lL~ryr--~~~~~FnD--------DiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGs-Ag 337 (585)
-..+||+==...-+...+|+.-- +++==||- ...+--.+|-+|++.-++..+.+|.+.++|++|.+. -|
T Consensus 90 ~GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVG 169 (283)
T COG0190 90 DGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVG 169 (283)
T ss_pred cEEEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCc
Confidence 34567766555555666666542 12111111 134455788999999999999999999999999974 57
Q ss_pred HHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCC
Q 007904 338 TGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGR 417 (585)
Q Consensus 338 ~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g 417 (585)
--+|.||..+ + ..+.+|.|+ .++|.+.+++ +|++|-.-+.++
T Consensus 170 kPla~lL~~~-----n-------aTVtvcHs~------------------------T~~l~~~~k~--ADIvv~AvG~p~ 211 (283)
T COG0190 170 KPLALLLLNA-----N-------ATVTVCHSR------------------------TKDLASITKN--ADIVVVAVGKPH 211 (283)
T ss_pred HHHHHHHHhC-----C-------CEEEEEcCC------------------------CCCHHHHhhh--CCEEEEecCCcc
Confidence 7888888762 3 235555543 1357777886 999999999999
Q ss_pred CCCHHHHH
Q 007904 418 TFTKEVIE 425 (585)
Q Consensus 418 ~Ft~evi~ 425 (585)
.|+.++|+
T Consensus 212 ~i~~d~vk 219 (283)
T COG0190 212 FIKADMVK 219 (283)
T ss_pred cccccccc
Confidence 99999987
No 226
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=75.78 E-value=21 Score=40.55 Aligned_cols=194 Identities=17% Similarity=0.138 Sum_probs=107.7
Q ss_pred CCCeeeccCC---CchHHHHHHHHHHHHHH------------------hCCCcccceEEEeCcchHHHHHHHHHHHHHHh
Q 007904 292 TTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 350 (585)
Q Consensus 292 ~~~~~FnDDi---QGTaaV~lAgll~A~r~------------------~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~ 350 (585)
..+++.|--- +.+|=-+++.+|+..|. .|..|.++++.|+|-|..|-.+|+.+...
T Consensus 84 ~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~f--- 160 (525)
T TIGR01327 84 RGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAF--- 160 (525)
T ss_pred CCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhC---
Confidence 4566666421 23455567777776653 24568999999999999999999998643
Q ss_pred hcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEec-c---CCCCCCCHHHHHH
Q 007904 351 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS-S---GVGRTFTKEVIEA 426 (585)
Q Consensus 351 ~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~-S---~~~g~Ft~evi~~ 426 (585)
|+ +++.+|+.. .... . ..+ ......+|.|+++. .|+++=. . ..-+.|+++.+..
T Consensus 161 --G~-------~V~~~d~~~--~~~~---~----~~~--g~~~~~~l~ell~~--aDvV~l~lPlt~~T~~li~~~~l~~ 218 (525)
T TIGR01327 161 --GM-------KVLAYDPYI--SPER---A----EQL--GVELVDDLDELLAR--ADFITVHTPLTPETRGLIGAEELAK 218 (525)
T ss_pred --CC-------EEEEECCCC--ChhH---H----Hhc--CCEEcCCHHHHHhh--CCEEEEccCCChhhccCcCHHHHhc
Confidence 64 588888741 1110 0 001 01112479999876 8887722 1 2246889999998
Q ss_pred HHcCCCCcEEEecCCCCCcCCCCHHHHhccccCcEEEecCCCCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccC
Q 007904 427 MASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVH 506 (585)
Q Consensus 427 Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Grai~AsGSPf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~It 506 (585)
|. +..++.=.|.-.---|.---+|+ ..|+.-.|.=-=|++--.... .--+..|+.+-|=+|-....+ -
T Consensus 219 mk---~ga~lIN~aRG~~vde~aL~~aL--~~g~i~gAaLDVf~~EP~~~~--pL~~~~nvi~TPHia~~t~e~-----~ 286 (525)
T TIGR01327 219 MK---KGVIIVNCARGGIIDEAALYEAL--EEGHVRAAALDVFEKEPPTDN--PLFDLDNVIATPHLGASTREA-----Q 286 (525)
T ss_pred CC---CCeEEEEcCCCceeCHHHHHHHH--HcCCeeEEEEecCCCCCCCCC--hhhcCCCeEECCCccccHHHH-----H
Confidence 85 56677766654432232223333 356654432111110000011 112446888888877433332 2
Q ss_pred HHHHHHHHHHHHcccC
Q 007904 507 DDMLLAASEALAKQVT 522 (585)
Q Consensus 507 d~m~~aAA~aLA~~v~ 522 (585)
..|...+++.+-+...
T Consensus 287 ~~~~~~~~~ni~~~~~ 302 (525)
T TIGR01327 287 ENVATQVAEQVLDALK 302 (525)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3344445555555444
No 227
>PLN02527 aspartate carbamoyltransferase
Probab=75.43 E-value=59 Score=34.65 Aligned_cols=136 Identities=16% Similarity=0.209 Sum_probs=81.2
Q ss_pred HHHHHHHHHhcCCceeeeeecCCCchHHHHHHHHcCCCeeec--cCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcc
Q 007904 257 DEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN--DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAG 334 (585)
Q Consensus 257 defv~av~~~fGp~~lIq~EDf~~~~af~lL~ryr~~~~~Fn--DDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAG 334 (585)
.+.+.. -.+| .++++ .-.+......+ +.+| .++||.| |+...-=+=+||=++.-.+..| ++++.||+++|.+
T Consensus 87 ~Dta~v-ls~y-~D~iv-iR~~~~~~~~~-~a~~-~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD~ 160 (306)
T PLN02527 87 EDTIRT-VEGY-SDIIV-LRHFESGAARR-AAAT-AEIPVINAGDGPGQHPTQALLDVYTIQREIG-RLDGIKVGLVGDL 160 (306)
T ss_pred HHHHHH-HHHh-CcEEE-EECCChhHHHH-HHHh-CCCCEEECCCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCC
Confidence 334433 3456 44333 44454444333 3344 4799999 4455666677888887777666 5999999999988
Q ss_pred hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc-CC---CCCHHHHhcccCCcEEE
Q 007904 335 EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EP---VNNLLDAVKVIKPTILI 410 (585)
Q Consensus 335 sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~-~~---~~~L~e~v~~vkptvLI 410 (585)
.=+ -+++-++.++.+-.|+ .|.++-.+|+- +++....++++. .. ..++.|+++. .||+.
T Consensus 161 ~~~-rv~~Sl~~~~~~~~g~-------~v~~~~P~~~~-------~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvy 223 (306)
T PLN02527 161 ANG-RTVRSLAYLLAKYEDV-------KIYFVAPDVVK-------MKDDIKDYLTSKGVEWEESSDLMEVASK--CDVLY 223 (306)
T ss_pred CCC-hhHHHHHHHHHhcCCC-------EEEEECCCccC-------CCHHHHHHHHHcCCEEEEEcCHHHHhCC--CCEEE
Confidence 422 2455554444331253 58888777762 222222333321 11 2589999998 99999
Q ss_pred eccCC
Q 007904 411 GSSGV 415 (585)
Q Consensus 411 G~S~~ 415 (585)
-.+.+
T Consensus 224 t~~~q 228 (306)
T PLN02527 224 QTRIQ 228 (306)
T ss_pred ECCcc
Confidence 87654
No 228
>PRK13938 phosphoheptose isomerase; Provisional
Probab=75.41 E-value=16 Score=36.50 Aligned_cols=105 Identities=14% Similarity=0.136 Sum_probs=52.6
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhh-hcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhc
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE-TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 402 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~ee-A~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~ 402 (585)
++.||.|+|.|..| -+|..+..-|.. +++.+- +-..+.++.....++.-- +-..+-..|++. +.-.+
T Consensus 44 ~g~rI~i~G~G~S~-~~A~~fa~~L~~--~~~~~r~~lg~~~l~~~~~~~~a~~--nd~~~~~~~~~~------~~~~~- 111 (196)
T PRK13938 44 AGARVFMCGNGGSA-ADAQHFAAELTG--HLIFDRPPLGAEALHANSSHLTAVA--NDYDYDTVFARA------LEGSA- 111 (196)
T ss_pred CCCEEEEEeCcHHH-HHHHHHHHHcCC--CccCCcCccceEEEeCChHHHHHhh--ccccHHHHHHHH------HHhcC-
Confidence 67899999999987 677777665532 221100 001122221111111000 000112222221 22222
Q ss_pred ccCCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEecCCCC
Q 007904 403 VIKPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPT 443 (585)
Q Consensus 403 ~vkptvLIG~S~~~g~Ft~evi~~Ma--~~~erPIIFaLSNPt 443 (585)
-+-|++|++|..|. |+++++.+. +...-|+|.=-+||.
T Consensus 112 -~~~DllI~iS~SG~--t~~vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 112 -RPGDTLFAISTSGN--SMSVLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred -CCCCEEEEEcCCCC--CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 35789999999875 999999873 344445554444443
No 229
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.25 E-value=1.4 Score=49.81 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.1
Q ss_pred cccceEEEeCcchHHHHHHHHHHHH
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIALE 347 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~~ 347 (585)
.+.-+|+|+|||-||+..|++|.+.
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~ 37 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDF 37 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHc
Confidence 3456899999999999999999986
No 230
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=74.79 E-value=17 Score=39.50 Aligned_cols=109 Identities=17% Similarity=0.223 Sum_probs=70.2
Q ss_pred chHHHHHHHHHHHHHHh--------------------CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCe
Q 007904 303 GTASVVLAGVVAALKLI--------------------GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 362 (585)
Q Consensus 303 GTaaV~lAgll~A~r~~--------------------g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~ 362 (585)
-||-++++-+|.++|-. |..+.++||.|+|.|+.|.-||+.|... | ..
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~F-----g-------~~ 187 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPF-----G-------CV 187 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhc-----c-------ce
Confidence 57788888888888843 3468899999999999999999999773 3 22
Q ss_pred EEEEcCCCcccCCCccC-CchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEE
Q 007904 363 ICLVDSKGLIVSSRKDS-LQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLIL 437 (585)
Q Consensus 363 i~lvD~~GLi~~~r~~~-l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~Ft~evi~~Ma~~~erPIIF 437 (585)
|. +.+|... ....+..++. .-++.|...+ .|+|+=..- .-++|+++.+..|. +.=+|.
T Consensus 188 i~--------y~~r~~~~~~~~~~~~~~----~~d~~~~~~~--sD~ivv~~pLt~~T~~liNk~~~~~mk---~g~vlV 250 (336)
T KOG0069|consen 188 IL--------YHSRTQLPPEEAYEYYAE----FVDIEELLAN--SDVIVVNCPLTKETRHLINKKFIEKMK---DGAVLV 250 (336)
T ss_pred ee--------eecccCCchhhHHHhccc----ccCHHHHHhh--CCEEEEecCCCHHHHHHhhHHHHHhcC---CCeEEE
Confidence 33 2333111 1222333433 3467777765 888874431 12689999999995 444444
Q ss_pred ecC
Q 007904 438 ALS 440 (585)
Q Consensus 438 aLS 440 (585)
-.+
T Consensus 251 N~a 253 (336)
T KOG0069|consen 251 NTA 253 (336)
T ss_pred ecc
Confidence 333
No 231
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=74.59 E-value=6.3 Score=41.24 Aligned_cols=102 Identities=15% Similarity=0.169 Sum_probs=57.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc-----hhchhhcccc-CCCCCHHH
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ-----HFKKPWAHEH-EPVNNLLD 399 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~-----~~k~~fa~~~-~~~~~L~e 399 (585)
.||.|+|+|..|..+|..+.++ | .+++++|+..-...-+...+. ..+..+.... ....++ +
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G-------~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~ 69 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----G-------ADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-A 69 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----C-------CcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-h
Confidence 4799999999999999998764 5 368888874211000000010 0000000000 001233 4
Q ss_pred HhcccCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 007904 400 AVKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 444 (585)
Q Consensus 400 ~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~-~erPIIFaLSNPt~ 444 (585)
+++ ++|++|=+.... ..+++++.+..+ .+..+|..+.|...
T Consensus 70 ~~~--~~D~vil~vk~~--~~~~~~~~l~~~~~~~~iii~~~nG~~ 111 (341)
T PRK08229 70 ALA--TADLVLVTVKSA--ATADAAAALAGHARPGAVVVSFQNGVR 111 (341)
T ss_pred hcc--CCCEEEEEecCc--chHHHHHHHHhhCCCCCEEEEeCCCCC
Confidence 454 478877544333 358888888764 45568888888764
No 232
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=74.55 E-value=1.5 Score=49.28 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.4
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHH
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIAL 346 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~ 346 (585)
+..++.||||+|||.||++-|.-|++
T Consensus 17 ~~~~~~kIvIIGAG~AGLaAA~rLle 42 (498)
T KOG0685|consen 17 KARGNAKIVIIGAGIAGLAAATRLLE 42 (498)
T ss_pred hccCCceEEEECCchHHHHHHHHHHH
Confidence 44566699999999999999999984
No 233
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.14 E-value=14 Score=41.14 Aligned_cols=36 Identities=28% Similarity=0.466 Sum_probs=28.9
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+...||+|+|+|-+|.++|+.|.. .|. .+.+.|++
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~-----~G~-------~V~~~D~~ 47 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSE-----LGC-------DVVVADDN 47 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHH-----CCC-------EEEEECCC
Confidence 3566899999999999999999875 363 58888864
No 234
>PRK08618 ornithine cyclodeaminase; Validated
Probab=73.78 E-value=17 Score=38.54 Aligned_cols=105 Identities=15% Similarity=0.204 Sum_probs=61.3
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc----cCCCCCHHH
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 399 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~----~~~~~~L~e 399 (585)
...+++|+|+|..|-.++..+... .|+ +++.++|+. ..+ .......+... .....++++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~----~~~------~~v~v~~r~----~~~---a~~~~~~~~~~~~~~~~~~~~~~~ 188 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAV----RDI------ERVRVYSRT----FEK---AYAFAQEIQSKFNTEIYVVNSADE 188 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc----CCc------cEEEEECCC----HHH---HHHHHHHHHHhcCCcEEEeCCHHH
Confidence 457899999999988777655442 254 789999874 222 22222222111 112467888
Q ss_pred HhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEecC-CCCCcCCCCHHHHhc
Q 007904 400 AVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALS-NPTSQSECTAEEAYT 455 (585)
Q Consensus 400 ~v~~vkptvLIG~S~~~-g~Ft~evi~~Ma~~~erPIIFaLS-NPt~~~E~tpeda~~ 455 (585)
+++. .|++|-++..+ ..|+ ++++ +.--|.++- +--.+.|+.+ +.+.
T Consensus 189 ~~~~--aDiVi~aT~s~~p~i~-~~l~------~G~hV~~iGs~~p~~~E~~~-~~~~ 236 (325)
T PRK08618 189 AIEE--ADIIVTVTNAKTPVFS-EKLK------KGVHINAVGSFMPDMQELPS-EAIA 236 (325)
T ss_pred HHhc--CCEEEEccCCCCcchH-HhcC------CCcEEEecCCCCcccccCCH-HHHh
Confidence 9975 89998765433 2344 4443 444566663 3224688888 4443
No 235
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=73.68 E-value=3.2 Score=43.76 Aligned_cols=38 Identities=32% Similarity=0.438 Sum_probs=34.4
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
++|++.+|+++|+|..|.-||+.|+.+ |+ ++|.++|.+
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLala-----GV------g~itI~D~d 52 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILA-----GV------KSVTLHDTK 52 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 468899999999999999999999875 87 899999987
No 236
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.60 E-value=12 Score=40.82 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=28.1
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+++.+++|.|+|..|.++|+.|.+ .|. ++++.|++
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~-----~G~-------~V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHK-----LGA-------NVTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHH-----CCC-------EEEEEcCC
Confidence 567899999999999999888775 363 58888864
No 237
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=73.40 E-value=3.9 Score=38.78 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=21.0
Q ss_pred EEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 329 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 329 v~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+|+|||.||+..|..|.+ .|+ +.+.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~-----~g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE-----RGI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHH-----TT---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHh-----CCC------CcEEEEeCC
Confidence 689999999999987765 376 448899987
No 238
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=73.24 E-value=7.3 Score=32.30 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=29.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCccc
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 373 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~ 373 (585)
|++|+|+|..|+-+|..+... | .++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-----g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-----G-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-----C-------cEEEEEeccchhh
Confidence 799999999999999988552 5 6789999887766
No 239
>PLN02602 lactate dehydrogenase
Probab=72.91 E-value=12 Score=40.66 Aligned_cols=123 Identities=20% Similarity=0.324 Sum_probs=74.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCC---CCHHHHhc
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV---NNLLDAVK 402 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~---~~L~e~v~ 402 (585)
.||.|+|||..|..+|-.|+. .|+ ...|.|+|..-=...+-.-+|.+.. +|-.. ..+ .+.++ ++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-----~~l-----~~el~LiDi~~~~~~g~a~DL~~~~-~~~~~-~~i~~~~dy~~-~~ 104 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-----QDL-----ADELALVDVNPDKLRGEMLDLQHAA-AFLPR-TKILASTDYAV-TA 104 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCCCchhhHHHHHHHhhh-hcCCC-CEEEeCCCHHH-hC
Confidence 499999999999999998764 266 3579999974111111101132211 22211 111 24444 66
Q ss_pred ccCCcEEEeccCCC---CCCCH------------HHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhcccc--CcEEEec
Q 007904 403 VIKPTILIGSSGVG---RTFTK------------EVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFAS 465 (585)
Q Consensus 403 ~vkptvLIG~S~~~---g~Ft~------------evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~--Grai~As 465 (585)
+ .|++|=+.+.+ | -|. ++++.|.+++..-+|+-.|||. .....-+++++. =+-+|++
T Consensus 105 d--aDiVVitAG~~~k~g-~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPv---dv~t~~~~k~sg~p~~rviG~ 178 (350)
T PLN02602 105 G--SDLCIVTAGARQIPG-ESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPV---DVLTYVAWKLSGFPANRVIGS 178 (350)
T ss_pred C--CCEEEECCCCCCCcC-CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCch---HHHHHHHHHHhCCCHHHEEee
Confidence 5 89988555443 3 233 7788889999999999999998 233334455441 1336666
Q ss_pred CC
Q 007904 466 GS 467 (585)
Q Consensus 466 GS 467 (585)
|.
T Consensus 179 gt 180 (350)
T PLN02602 179 GT 180 (350)
T ss_pred cc
Confidence 63
No 240
>PRK06932 glycerate dehydrogenase; Provisional
Probab=72.91 E-value=28 Score=36.92 Aligned_cols=137 Identities=16% Similarity=0.209 Sum_probs=81.5
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHH
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 400 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~ 400 (585)
..|.++++.|+|-|..|-.+|+++.. | |+ +++.+|+..- ... . ....+|.|+
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~-f----g~-------~V~~~~~~~~------~~~---~-------~~~~~l~el 194 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQA-L----GM-------KVLYAEHKGA------SVC---R-------EGYTPFEEV 194 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhc-C----CC-------EEEEECCCcc------ccc---c-------cccCCHHHH
Confidence 45889999999999999999998854 2 65 4666665310 000 0 113479999
Q ss_pred hcccCCcEEEec----cCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhc--cccCcEEEecCCCCC--cc
Q 007904 401 VKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT--WSKGRAIFASGSPFD--PF 472 (585)
Q Consensus 401 v~~vkptvLIG~----S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~--wt~Grai~AsGSPf~--pv 472 (585)
+.. .|+++=. ...-|.|+++.+..|. +..++.=.|. .++-=|+|+. ..+|+.-.|.--=|+ |.
T Consensus 195 l~~--sDiv~l~~Plt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~ 265 (314)
T PRK06932 195 LKQ--ADIVTLHCPLTETTQNLINAETLALMK---PTAFLINTGR----GPLVDEQALLDALENGKIAGAALDVLVKEPP 265 (314)
T ss_pred HHh--CCEEEEcCCCChHHhcccCHHHHHhCC---CCeEEEECCC----ccccCHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 987 8998832 2224799999999995 6667775554 4455454442 135655433222121 11
Q ss_pred eeCCeeeC--cCCCcccccchhhhH
Q 007904 473 EYNGKVFV--PGQANNAYIFPGFGL 495 (585)
Q Consensus 473 ~~~G~~~~--p~Q~NN~yiFPGigl 495 (585)
.-+. .+. --+..|+++-|=+|-
T Consensus 266 ~~~~-pl~~~~~~~pnvilTPHia~ 289 (314)
T PRK06932 266 EKDN-PLIQAAKRLPNLLITPHIAW 289 (314)
T ss_pred CCCC-hhhHhhcCCCCEEECCcccc
Confidence 1110 000 013568888887763
No 241
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=72.75 E-value=5.3 Score=38.85 Aligned_cols=111 Identities=22% Similarity=0.271 Sum_probs=58.6
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc--------------C
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--------------E 392 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~--------------~ 392 (585)
+|.|+|||..|.|||-+++.+ | -++.++|.+---...-.+.+......+.+.. .
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-----G-------~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~ 68 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-----G-------YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS 68 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-----T-------SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE
T ss_pred CEEEEcCCHHHHHHHHHHHhC-----C-------CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc
Confidence 689999999999999999874 6 4788998852211000000111000010000 0
Q ss_pred CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhcc
Q 007904 393 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW 456 (585)
Q Consensus 393 ~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~w 456 (585)
-..+|.+++ + .|.+|=+-.-.--.++++.+.+.+.+..=.||+ || | +-.+..+.-+.
T Consensus 69 ~~~dl~~~~-~--adlViEai~E~l~~K~~~~~~l~~~~~~~~ila-sn-T--Ssl~i~~la~~ 125 (180)
T PF02737_consen 69 FTTDLEEAV-D--ADLVIEAIPEDLELKQELFAELDEICPPDTILA-SN-T--SSLSISELAAA 125 (180)
T ss_dssp EESSGGGGC-T--ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEE-E-----SSS-HHHHHTT
T ss_pred cccCHHHHh-h--hheehhhccccHHHHHHHHHHHHHHhCCCceEE-ec-C--CCCCHHHHHhc
Confidence 124677766 3 788886654333467888999988885555554 33 2 33455554433
No 242
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=72.71 E-value=18 Score=37.35 Aligned_cols=32 Identities=38% Similarity=0.605 Sum_probs=26.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+|.|+|+|..|.+||..++.+ | .+++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-----G-------~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-----G-------MDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCC
Confidence 5799999999999999998764 6 368888864
No 243
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=72.59 E-value=20 Score=37.30 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=26.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+|.|+|+|..|..+|..+... |. ..+++++|++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-----g~-----~~~V~~~dr~ 40 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-----GL-----AGEIVGADRS 40 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CcEEEEEECC
Confidence 6899999999999999888653 54 2468888874
No 244
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=71.85 E-value=4.9 Score=42.97 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=29.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a-----GV------g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW-----GV------RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999875 87 899999986
No 245
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=71.75 E-value=5.6 Score=42.35 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=19.7
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 007904 325 EHRFLFLGAGEAGTGIAELIAL 346 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~ 346 (585)
..||.|+|||+-|..+|..|.+
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~ 28 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICAR 28 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHH
Confidence 3789999999999999998875
No 246
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=71.71 E-value=13 Score=45.75 Aligned_cols=99 Identities=15% Similarity=0.209 Sum_probs=52.3
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhc------------Ce---EEE--EcCCCccc-CCCccCCchhchh
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR------------KK---ICL--VDSKGLIV-SSRKDSLQHFKKP 386 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~------------~~---i~l--vD~~GLi~-~~r~~~l~~~k~~ 386 (585)
--+|||.|+|..|.|.++++...-.+ =++.++-+ ++ +|- +.+.-.+. ++. +.--+.+..
T Consensus 203 P~~vVi~G~G~Vg~gA~~i~~~lg~~--~v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~-~~~f~~~~y 279 (1042)
T PLN02819 203 PLVFVFTGSGNVSQGAQEIFKLLPHT--FVEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDP-SKQFDKADY 279 (1042)
T ss_pred CeEEEEeCCchHHHHHHHHHhhcCCC--ccCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCC-ccccchhhh
Confidence 58999999999999999988653110 01222210 11 220 11111111 110 000111223
Q ss_pred hccccCCC-CCHH-HHhcccCCcEEEecc----CCCCCCCHH-HHHHHHc
Q 007904 387 WAHEHEPV-NNLL-DAVKVIKPTILIGSS----GVGRTFTKE-VIEAMAS 429 (585)
Q Consensus 387 fa~~~~~~-~~L~-e~v~~vkptvLIG~S----~~~g~Ft~e-vi~~Ma~ 429 (585)
|+++ +.. ..+. +++.. .|+|||+= ..|.++|++ +++.|..
T Consensus 280 ~~~P-e~y~s~F~~~~~~~--advlIn~i~~~~~~P~lvt~~~~~~~mk~ 326 (1042)
T PLN02819 280 YAHP-EHYNPVFHEKIAPY--ASVIVNCMYWEKRFPRLLTTKQLQDLTRK 326 (1042)
T ss_pred ccCc-hhccchhHHHhHhh--CCEEEeeeecCCCCCceeCHHHHHHhhcC
Confidence 3333 222 4454 67776 99999984 345689999 8888864
No 247
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=71.71 E-value=61 Score=33.98 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=23.6
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcC
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 368 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 368 (585)
..++++|+|+|..|+..+.++...+ |- .+++.+|+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~----g~------~~vi~~~~ 197 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIY----PE------SKLVVFGK 197 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhc----CC------CcEEEEeC
Confidence 4789999999987766655554321 32 46887776
No 248
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=71.52 E-value=5.2 Score=40.94 Aligned_cols=32 Identities=28% Similarity=0.473 Sum_probs=28.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
||+++|+|..|.-+++.|+.+ |+ ++|.++|.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~-----Gv------g~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-----GF------GQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999774 87 889999987
No 249
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=71.45 E-value=9.1 Score=37.16 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=24.0
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 322 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 322 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
++++.+++|.|| |..|..+++.++ + .|. +++++++.
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~----~-~G~-------~V~~~~r~ 38 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFA----A-EGA-------RVVVTDRN 38 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHH----H-CCC-------EEEEEeCC
Confidence 367789999998 445555555554 3 363 58888875
No 250
>PRK07877 hypothetical protein; Provisional
Probab=71.34 E-value=8 Score=45.82 Aligned_cols=101 Identities=21% Similarity=0.193 Sum_probs=65.9
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch----------hchhhccc
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH----------FKKPWAHE 390 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~----------~k~~fa~~ 390 (585)
.+|++.||+|+|+| .|.-+|..|+.+ |+ ..+|.++|.+=+ ..+ +|+. .|..-+..
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~Lara-----Gv-----vG~l~lvD~D~v-e~s---NLnRq~~~~~diG~~Kv~~a~~ 167 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAE-----GL-----CGELRLADFDTL-ELS---NLNRVPAGVFDLGVNKAVVAAR 167 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHc-----cC-----CCeEEEEcCCEE-ccc---ccccccCChhhcccHHHHHHHH
Confidence 56889999999998 888888888764 63 278999998733 211 2333 11111110
Q ss_pred -----cCC---------C--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 007904 391 -----HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 440 (585)
Q Consensus 391 -----~~~---------~--~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLS 440 (585)
.+. + .++.+.+++ .|++|-++-- .=++-+|...|.....|+|++.+
T Consensus 168 ~l~~inp~i~v~~~~~~i~~~n~~~~l~~--~DlVvD~~D~--~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 168 RIAELDPYLPVEVFTDGLTEDNVDAFLDG--LDVVVEECDS--LDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred HHHHHCCCCEEEEEeccCCHHHHHHHhcC--CCEEEECCCC--HHHHHHHHHHHHHcCCCEEEEcC
Confidence 011 1 146666654 7888877652 33777788888888899998875
No 251
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=71.04 E-value=11 Score=41.53 Aligned_cols=104 Identities=13% Similarity=0.166 Sum_probs=57.6
Q ss_pred HHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc--
Q 007904 313 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-- 390 (585)
Q Consensus 313 l~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-- 390 (585)
+.++.-....|+..|++|+|-..-.+++++.|.+ .|+.. ..+ ++....+...+.-+.+...
T Consensus 291 ~~~~~~~~~~l~gkrv~i~g~~~~~~~la~~L~e-----lGm~v------~~~------~~~~~~~~~~~~~~~~l~~~~ 353 (435)
T cd01974 291 VDAMTDSHQYLHGKKFALYGDPDFLIGLTSFLLE-----LGMEP------VHV------LTGNGGKRFEKEMQALLDASP 353 (435)
T ss_pred HHHHHHHHHhcCCCEEEEEcChHHHHHHHHHHHH-----CCCEE------EEE------EeCCCCHHHHHHHHHHHhhcC
Confidence 3334444456788999999988899999999875 38732 111 1111111011111111111
Q ss_pred ---------cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 007904 391 ---------HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 443 (585)
Q Consensus 391 ---------~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt 443 (585)
..+...+++.++..+||++||-|. . +.+|+...-|.| ..+.|.
T Consensus 354 ~~~~~~v~~~~d~~e~~~~i~~~~pDliiG~s~-----~----~~~a~~~gip~v-~~~~P~ 405 (435)
T cd01974 354 YGAGAKVYPGKDLWHLRSLLFTEPVDLLIGNTY-----G----KYIARDTDIPLV-RFGFPI 405 (435)
T ss_pred CCCCcEEEECCCHHHHHHHHhhcCCCEEEECcc-----H----HHHHHHhCCCEE-EeeCCc
Confidence 122235778888999999999764 1 234433356653 555565
No 252
>PRK06046 alanine dehydrogenase; Validated
Probab=70.27 E-value=26 Score=37.15 Aligned_cols=104 Identities=15% Similarity=0.152 Sum_probs=64.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc----cCCCCCHHH
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLLD 399 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~----~~~~~~L~e 399 (585)
.-.++.|+|+|..|...++.+... .++ ++++++|++- .+ .......+... .....++.|
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~----~~i------~~v~v~~r~~----~~---~~~~~~~~~~~~~~~v~~~~~~~~ 190 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEV----FDL------EEVRVYDRTK----SS---AEKFVERMSSVVGCDVTVAEDIEE 190 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhh----CCc------eEEEEECCCH----HH---HHHHHHHHHhhcCceEEEeCCHHH
Confidence 457999999999987777666442 243 7899998851 11 22222222111 112357888
Q ss_pred HhcccCCcEEEeccC-CCCCCCHHHHHHHHcCCCCcEEEec-CCCCCcCCCCHHHH
Q 007904 400 AVKVIKPTILIGSSG-VGRTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEEA 453 (585)
Q Consensus 400 ~v~~vkptvLIG~S~-~~g~Ft~evi~~Ma~~~erPIIFaL-SNPt~~~E~tpeda 453 (585)
+++ .|+++-++. ...+|..++++ +.-.|-++ |+-..+.|+.++-.
T Consensus 191 ~l~---aDiVv~aTps~~P~~~~~~l~------~g~hV~~iGs~~p~~~El~~~~~ 237 (326)
T PRK06046 191 ACD---CDILVTTTPSRKPVVKAEWIK------EGTHINAIGADAPGKQELDPEIL 237 (326)
T ss_pred Hhh---CCEEEEecCCCCcEecHHHcC------CCCEEEecCCCCCccccCCHHHH
Confidence 885 899887653 23478888886 33346666 45446799998743
No 253
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=69.71 E-value=11 Score=42.23 Aligned_cols=95 Identities=13% Similarity=0.168 Sum_probs=61.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc--cCCCCCHHHHhccc
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEPVNNLLDAVKVI 404 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~--~~~~~~L~e~v~~v 404 (585)
.|-|+|.|..|..+|..|.+. |. +++++|+. ..+ ....++.+... .....++.|+++..
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~v~drt----~~~---~~~l~~~~~~g~~~~~~~s~~e~v~~l 61 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-----GF-------TVSVYNRT----PEK---TDEFLAEHAKGKKIVGAYSIEEFVQSL 61 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-----CC-------eEEEEeCC----HHH---HHHHHhhccCCCCceecCCHHHHHhhc
Confidence 378999999999999999763 63 58888763 111 22222111100 11235788888654
Q ss_pred -CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCC
Q 007904 405 -KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSN 441 (585)
Q Consensus 405 -kptvLIG~S~~~g~Ft~evi~~Ma~~-~erPIIFaLSN 441 (585)
+|+++| ++-+++...++++..+..+ .+.-||.=+||
T Consensus 62 ~~~dvIi-l~v~~~~~v~~Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 62 ERPRKIM-LMVKAGAPVDAVINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred CCCCEEE-EECCCcHHHHHHHHHHHhhCCCCCEEEECCC
Confidence 588666 3444556678888887654 56779999988
No 254
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=69.54 E-value=11 Score=39.85 Aligned_cols=123 Identities=17% Similarity=0.201 Sum_probs=71.8
Q ss_pred EeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEE
Q 007904 330 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTIL 409 (585)
Q Consensus 330 ~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvL 409 (585)
|+|||..|..+|-+|+. .|+ ...|.|+|.+-=..++-.-+|.+....+.++..-..+-.+.+++ .|++
T Consensus 1 iIGaG~VG~~~a~~l~~-----~~l-----~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d--aDiv 68 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-----QGI-----ADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD--ADLV 68 (299)
T ss_pred CCCcCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC--CCEE
Confidence 58999999999998864 266 25899999842111111111322221111110001123466776 8999
Q ss_pred EeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccC--cEEEecCC
Q 007904 410 IGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG--RAIFASGS 467 (585)
Q Consensus 410 IG~S~~~---g~-----------Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~G--rai~AsGS 467 (585)
|=+.+.+ |- .=+++.+.+.+++..-+|+-.|||.. ....-+++++.= +-+|.+|.
T Consensus 69 Vitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d---~~t~~~~~~sg~p~~~viG~gt 139 (299)
T TIGR01771 69 VITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD---ILTYVAWKLSGFPKNRVIGSGT 139 (299)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHH---HHHHHHHHHhCCCHHHEEeccc
Confidence 8665553 21 12467888889999999999999983 444445554411 23666654
No 255
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=69.53 E-value=10 Score=43.19 Aligned_cols=38 Identities=26% Similarity=0.455 Sum_probs=27.8
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 320 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 320 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+..+++.+++|+|||.+|-+|+..|.+ .| + +++++|+.
T Consensus 374 ~~~~~~k~vlIlGaGGagrAia~~L~~-----~G-----~--~V~i~nR~ 411 (529)
T PLN02520 374 GSPLAGKLFVVIGAGGAGKALAYGAKE-----KG-----A--RVVIANRT 411 (529)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEcCC
Confidence 446888999999999777666666654 36 2 68888873
No 256
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=69.52 E-value=8.2 Score=36.52 Aligned_cols=102 Identities=18% Similarity=0.233 Sum_probs=56.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-cCCCCCHHHHhccc
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVI 404 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~~~~~~L~e~v~~v 404 (585)
.||-|+|.|..|.+||+.|... |. +++.+|+. .+ .-+.+... .....++.|+++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g~-------~v~~~d~~----~~-------~~~~~~~~g~~~~~s~~e~~~~- 57 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----GY-------EVTVYDRS----PE-------KAEALAEAGAEVADSPAEAAEQ- 57 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----TT-------EEEEEESS----HH-------HHHHHHHTTEEEESSHHHHHHH-
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----CC-------eEEeeccc----hh-------hhhhhHHhhhhhhhhhhhHhhc-
Confidence 5899999999999999999653 63 68888863 11 11223222 2234689999988
Q ss_pred CCcEEEeccCCCCCCCHHHHHH--H-HcCCCCcEEEecCCCCCcCCCCHHHHhc
Q 007904 405 KPTILIGSSGVGRTFTKEVIEA--M-ASFNEKPLILALSNPTSQSECTAEEAYT 455 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~--M-a~~~erPIIFaLSNPt~~~E~tpeda~~ 455 (585)
.|++|=+-..+ .=.++++.. + ....+..||.=+|+-+ +|.+-+-+-.
T Consensus 58 -~dvvi~~v~~~-~~v~~v~~~~~i~~~l~~g~iiid~sT~~--p~~~~~~~~~ 107 (163)
T PF03446_consen 58 -ADVVILCVPDD-DAVEAVLFGENILAGLRPGKIIIDMSTIS--PETSRELAER 107 (163)
T ss_dssp -BSEEEE-SSSH-HHHHHHHHCTTHGGGS-TTEEEEE-SS----HHHHHHHHHH
T ss_pred -ccceEeecccc-hhhhhhhhhhHHhhccccceEEEecCCcc--hhhhhhhhhh
Confidence 57777432211 123455554 3 3334666777777655 5555444433
No 257
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=69.20 E-value=5.9 Score=41.93 Aligned_cols=32 Identities=28% Similarity=0.524 Sum_probs=28.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
||+++|+|.-|.-+++.|+.+ |+ ++|.++|.+
T Consensus 1 kVlVVGaGGlG~eilknLal~-----Gv------g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALS-----GF------RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 689999999999999999874 87 799999987
No 258
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=69.16 E-value=8.7 Score=43.21 Aligned_cols=98 Identities=18% Similarity=0.195 Sum_probs=62.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc-c--cCCCCCHHHHhc
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-E--HEPVNNLLDAVK 402 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~-~--~~~~~~L~e~v~ 402 (585)
.+|-|+|.|..|.++|..|.+. |. +++++|+. .++ ..+....-.. . .....++.|+++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~-----G~-------~V~v~dr~----~~~---~~~l~~~~~~~g~~i~~~~s~~e~v~ 62 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASR-----GF-------KISVYNRT----YEK---TEEFVKKAKEGNTRVKGYHTLEELVN 62 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHC-----CC-------eEEEEeCC----HHH---HHHHHHhhhhcCCcceecCCHHHHHh
Confidence 3799999999999999999763 63 58888873 221 1111111000 0 113468999997
Q ss_pred cc-CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCC
Q 007904 403 VI-KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 443 (585)
Q Consensus 403 ~v-kptvLIG~S~~~g~Ft~evi~~Ma~~-~erPIIFaLSNPt 443 (585)
.. +|+++| +.-+++...+++++.+..+ .+..||.=+||=.
T Consensus 63 ~l~~~d~Ii-l~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 63 SLKKPRKVI-LLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred cCCCCCEEE-EEeCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 65 688555 3333455678888776643 4578999999843
No 259
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=69.05 E-value=6.5 Score=39.73 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=25.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcc
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 372 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi 372 (585)
-+|+|+|||.||+..|..|.+. |+ ++.++|++.-.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-----G~-------~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-----GI-------DVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-----TC-------EEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----cc-------ccccchhcccc
Confidence 4799999999999999888763 75 47788886443
No 260
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=68.96 E-value=13 Score=38.81 Aligned_cols=106 Identities=15% Similarity=0.093 Sum_probs=58.8
Q ss_pred cccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch-hchhhcc-ccCCCCCHHH
Q 007904 323 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-FKKPWAH-EHEPVNNLLD 399 (585)
Q Consensus 323 l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~-~k~~fa~-~~~~~~~L~e 399 (585)
++..+|+|.|| |-.|..+++.|++ .| .+++.+|++.--.....+.+.. .+..+.. +-.+..++.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~-----~G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 69 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLE-----LG-------AEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRK 69 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHH-----CC-------CEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHH
Confidence 34578999996 7777777777765 25 3677787652100000000000 0001111 1122235778
Q ss_pred HhcccCCcEEEeccCCCCC----------------CCHHHHHHHHcCC-CCcEEEecC
Q 007904 400 AVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFN-EKPLILALS 440 (585)
Q Consensus 400 ~v~~vkptvLIG~S~~~g~----------------Ft~evi~~Ma~~~-erPIIFaLS 440 (585)
+++..+||++|=+.+.+.. .+..+++.|.+.+ .+.+||.=|
T Consensus 70 ~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 70 AIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred HHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 8888899999977764311 1345567776554 457888655
No 261
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=68.50 E-value=23 Score=38.30 Aligned_cols=122 Identities=13% Similarity=0.140 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhh
Q 007904 308 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 387 (585)
Q Consensus 308 ~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~f 387 (585)
+.|+.++|=....+.. .++.|+|+|.-+-... +++....++ ++|++.|+. . +....+...+
T Consensus 115 aAasavAa~~LA~~da--~~laiIGaG~qA~~ql----~a~~~v~~~------~~I~i~~r~----~---~~~e~~a~~l 175 (330)
T COG2423 115 AAASAVAAKYLARKDA--STLAIIGAGAQARTQL----EALKAVRDI------REIRVYSRD----P---EAAEAFAARL 175 (330)
T ss_pred HHHHHHHHHHhccCCC--cEEEEECCcHHHHHHH----HHHHhhCCc------cEEEEEcCC----H---HHHHHHHHHH
Confidence 3455666666665533 5789999998665444 444332344 778888774 1 1111221122
Q ss_pred ccc----cCCCCCHHHHhcccCCcEEEeccC-CCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhc
Q 007904 388 AHE----HEPVNNLLDAVKVIKPTILIGSSG-VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 455 (585)
Q Consensus 388 a~~----~~~~~~L~e~v~~vkptvLIG~S~-~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~ 455 (585)
.+. .....+++++|+. .|+++.++. ..-+|+.++|+. .--|.-.=||+-.+-|+.+|-..+
T Consensus 176 ~~~~~~~v~a~~s~~~av~~--aDiIvt~T~s~~Pil~~~~l~~-----G~hI~aiGad~p~k~Eld~e~l~r 241 (330)
T COG2423 176 RKRGGEAVGAADSAEEAVEG--ADIVVTATPSTEPVLKAEWLKP-----GTHINAIGADAPGKRELDPEVLAR 241 (330)
T ss_pred HhhcCccceeccCHHHHhhc--CCEEEEecCCCCCeecHhhcCC-----CcEEEecCCCCcccccCCHHHHHh
Confidence 122 2345799999998 999999853 234889999871 222333345777889999976654
No 262
>PRK14852 hypothetical protein; Provisional
Probab=67.78 E-value=20 Score=43.99 Aligned_cols=38 Identities=21% Similarity=0.153 Sum_probs=33.5
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
++|++.||+|+|+|..|.-||..|+.+ |+ ++|.++|-+
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAra-----GV------G~I~L~D~D 365 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLART-----GI------GNFNLADFD 365 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 578999999999998888888888764 87 899999987
No 263
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=66.63 E-value=24 Score=41.22 Aligned_cols=132 Identities=15% Similarity=0.169 Sum_probs=73.2
Q ss_pred hhhHHHHHHHHHHHHH-hcCCceeeeeecCCCc----hHHHHHHHHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCcc
Q 007904 250 QEYAELLDEFMSAVKQ-NYGEKVLIQFEDFANH----NAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLA 324 (585)
Q Consensus 250 ~~y~~~idefv~av~~-~fGp~~lIq~EDf~~~----~af~lL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~ 324 (585)
+.|.+.|-|.++++.+ .| .||.+.. =--.+++||..+|=.|+-... .++.|-. ..+
T Consensus 68 ~~y~~~V~Eli~~L~~nGF-------VrDv~~~~p~~L~~a~lERYaaqI~F~~~fs~----------s~~~rF~--~qR 128 (637)
T TIGR03693 68 APYQKRVFEIGEILYKNGF-------VRDVSQDAPHELESALLDRYAAQIEFIEADAD----------SGALKFE--LSR 128 (637)
T ss_pred HHHHHHHHHHHHHHHhCCc-------eeecccccCCCCCHHHHHHHHHHHHHHHHhcc----------Cchhhhh--hhh
Confidence 3444445565555544 33 4565321 123478999887765554322 1222222 238
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-c----------CC
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-H----------EP 393 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~----------~~ 393 (585)
+.||+++|.|..|.-+.-.|+. .|+ .+|..+|.+=..+ +.. .+.+. .+-|++ . ..
T Consensus 129 ~akVlVlG~Gg~~s~lv~sL~~-----sG~------~~I~~vd~D~v~S-Nln-RIgEl-~e~A~~~n~~v~v~~i~~~~ 194 (637)
T TIGR03693 129 NAKILAAGSGDFLTKLVRSLID-----SGF------PRFHAIVTDAEEH-ALD-RIHEL-AEIAEETDDALLVQEIDFAE 194 (637)
T ss_pred cccEEEEecCchHHHHHHHHHh-----cCC------CcEEEEeccccch-hhh-HHHHH-HHHHHHhCCCCceEeccCCc
Confidence 9999999999888777666654 487 7888886654422 111 01121 223332 1 11
Q ss_pred CCCHHHHhcccCCcEEEeccCCC
Q 007904 394 VNNLLDAVKVIKPTILIGSSGVG 416 (585)
Q Consensus 394 ~~~L~e~v~~vkptvLIG~S~~~ 416 (585)
..++.|+++. -|++|=+|..+
T Consensus 195 ~~dl~ev~~~--~DiVi~vsDdy 215 (637)
T TIGR03693 195 DQHLHEAFEP--ADWVLYVSDNG 215 (637)
T ss_pred chhHHHhhcC--CcEEEEECCCC
Confidence 2467777776 57888777755
No 264
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=66.52 E-value=8.1 Score=41.47 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=28.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+..||||+|+|.||+..|..|.+. |. ..+|.++|..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~-----~~-----~~~I~li~~e 37 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQ-----GF-----TGELHLFSDE 37 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhh-----CC-----CCCEEEeCCC
Confidence 457899999999999999998763 43 2468888764
No 265
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=65.89 E-value=18 Score=37.91 Aligned_cols=123 Identities=20% Similarity=0.266 Sum_probs=70.2
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC-CcccCCCccCCchhchhhcccc-CCCCCHHHHhcccC
Q 007904 328 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVIK 405 (585)
Q Consensus 328 iv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~-GLi~~~r~~~l~~~k~~fa~~~-~~~~~L~e~v~~vk 405 (585)
|.|+|||..|..+|-.|+. .|+ -..+.++|.+ .++..-. .+|.+....+.... ....+ .+.+++
T Consensus 1 i~iiGaG~VG~~~a~~l~~-----~~~-----~~el~l~D~~~~~~~g~~-~DL~~~~~~~~~~~i~~~~~-~~~l~~-- 66 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA-----KGL-----ASELVLVDVNEEKAKGDA-LDLSHASAFLATGTIVRGGD-YADAAD-- 66 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCccHHHHHH-HhHHHhccccCCCeEEECCC-HHHhCC--
Confidence 5789999999999876654 366 2579999973 2211111 12333322211100 00133 356766
Q ss_pred CcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccc--cCcEEEecCC
Q 007904 406 PTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGS 467 (585)
Q Consensus 406 ptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt--~Grai~AsGS 467 (585)
.|++|=+.+.+ |- +=+++.+.+.+++..-+|+-.|||. ++...-+++++ +-+-+|++|.
T Consensus 67 aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~---d~~~~~~~~~sg~~~~kviG~gt 141 (300)
T cd00300 67 ADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPV---DILTYVAQKLSGLPKNRVIGSGT 141 (300)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChH---HHHHHHHHHHhCcCHHHEEecCC
Confidence 88887544433 21 1246778888999999999999998 23343444432 1233566653
No 266
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=65.86 E-value=42 Score=36.18 Aligned_cols=138 Identities=17% Similarity=0.242 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhcCCceeeeeecCCCchHHHHHHHHcCCCeeec-cCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcc
Q 007904 256 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN-DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAG 334 (585)
Q Consensus 256 idefv~av~~~fGp~~lIq~EDf~~~~af~lL~ryr~~~~~Fn-DDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAG 334 (585)
+...+..+. +| .++++ +-.+.. .+.+.+.+| ..+|++| +|-.---+=+|+=++.-.+..|++|++.||+++|-+
T Consensus 91 l~DTarvls-~y-~D~iv-~R~~~~-~~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~ 165 (334)
T PRK01713 91 MKDTARVLG-RM-YDAIE-YRGFKQ-SIVNELAEY-AGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDA 165 (334)
T ss_pred HHHHHHHHH-Hh-CCEEE-EEcCch-HHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCC
Confidence 334444443 46 44444 333332 233334444 4689999 333444566788888877777778999999999987
Q ss_pred hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccC----CCCCHHHHhcccCCcEEE
Q 007904 335 EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE----PVNNLLDAVKVIKPTILI 410 (585)
Q Consensus 335 sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~----~~~~L~e~v~~vkptvLI 410 (585)
.- ++++-++.++.+ .|+ ++.++-.+++.-.. + +-..-+.+++... ...++.++++. .||+.
T Consensus 166 ~~--~v~~Sl~~~~~~-~g~-------~v~~~~P~~~~p~~--~-~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvVy 230 (334)
T PRK01713 166 RN--NMGNSLLLIGAK-LGM-------DVRICAPKALLPEA--S-LVEMCEKFAKESGARITVTDDIDKAVKG--VDFVH 230 (334)
T ss_pred cc--CHHHHHHHHHHH-cCC-------EEEEECCchhcCCH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEE
Confidence 53 478877777665 475 68888888773321 1 1111123333211 13689999997 99998
Q ss_pred ecc
Q 007904 411 GSS 413 (585)
Q Consensus 411 G~S 413 (585)
-.+
T Consensus 231 t~~ 233 (334)
T PRK01713 231 TDV 233 (334)
T ss_pred Ecc
Confidence 653
No 267
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=65.83 E-value=15 Score=38.47 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=25.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
||.|+|||+.|..+|..|.+. | .++.+++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-----g-------~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-----K-------ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 699999999999999998763 4 456777764
No 268
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=65.80 E-value=24 Score=39.71 Aligned_cols=111 Identities=11% Similarity=0.015 Sum_probs=65.2
Q ss_pred ceEEEeCc-chHHHHHHHHHHHH-HH-hhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhc
Q 007904 326 HRFLFLGA-GEAGTGIAELIALE-IS-KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 402 (585)
Q Consensus 326 ~riv~~GA-GsAg~GIA~ll~~~-~~-~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~ 402 (585)
.||.|+|| |..|..+|-.|+.. +. ..+|+ -.+++++|.+-=...+-.-+|.+-.-++.++..-..+-.+..+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i-----~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~k 175 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPI-----ALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQ 175 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCc-----ccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhC
Confidence 79999999 99999999988752 00 00133 2468889874211111110122222122211100123346677
Q ss_pred ccCCcEEEeccCCC---CC-----------CCHHHHHHHHc-CCCCcEEEecCCCC
Q 007904 403 VIKPTILIGSSGVG---RT-----------FTKEVIEAMAS-FNEKPLILALSNPT 443 (585)
Q Consensus 403 ~vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~-~~erPIIFaLSNPt 443 (585)
+ .|++|=+.+.+ |- .=+++.+.+.+ .+..-||+-.|||-
T Consensus 176 d--aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPv 229 (444)
T PLN00112 176 D--AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPC 229 (444)
T ss_pred c--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcH
Confidence 6 88888665553 21 12467778888 58999999999997
No 269
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=65.00 E-value=5.8 Score=41.42 Aligned_cols=41 Identities=24% Similarity=0.375 Sum_probs=32.9
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCccc
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 373 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~ 373 (585)
+|++++|+++|.|..|-=+++.|.. .|+ .+|.++|-+-+=.
T Consensus 27 kl~~~~V~VvGiGGVGSw~veALaR-----sGi------g~itlID~D~v~v 67 (263)
T COG1179 27 KLKQAHVCVVGIGGVGSWAVEALAR-----SGI------GRITLIDMDDVCV 67 (263)
T ss_pred HHhhCcEEEEecCchhHHHHHHHHH-----cCC------CeEEEEecccccc
Confidence 5889999999999888777666655 487 8999999976543
No 270
>PRK07589 ornithine cyclodeaminase; Validated
Probab=64.57 E-value=74 Score=34.56 Aligned_cols=105 Identities=14% Similarity=0.154 Sum_probs=65.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc---CCCCCHHHH
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 400 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~---~~~~~L~e~ 400 (585)
.-.++.|+|+|.-+..-++.++... .+ ++|+++|+. ..+ ...+...+.+.. ....+++|+
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr----~i------~~V~v~~r~----~~~---a~~~~~~~~~~~~~v~~~~~~~~a 190 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALL----GI------EEIRLYDID----PAA---TAKLARNLAGPGLRIVACRSVAEA 190 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhC----Cc------eEEEEEeCC----HHH---HHHHHHHHHhcCCcEEEeCCHHHH
Confidence 3478999999998877776666531 33 788888763 111 222222222111 113689999
Q ss_pred hcccCCcEEEeccCCC---CCCCHHHHHHHHcCCCCcEEEec-CCCCCcCCCCHHHH
Q 007904 401 VKVIKPTILIGSSGVG---RTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEEA 453 (585)
Q Consensus 401 v~~vkptvLIG~S~~~---g~Ft~evi~~Ma~~~erPIIFaL-SNPt~~~E~tpeda 453 (585)
+++ .||++.++... -+|..++++. .--|-++ |+--.+-|+.++-.
T Consensus 191 v~~--ADIIvtaT~S~~~~Pvl~~~~lkp------G~hV~aIGs~~p~~~Eld~~~l 239 (346)
T PRK07589 191 VEG--ADIITTVTADKTNATILTDDMVEP------GMHINAVGGDCPGKTELHPDIL 239 (346)
T ss_pred Hhc--CCEEEEecCCCCCCceecHHHcCC------CcEEEecCCCCCCcccCCHHHH
Confidence 987 99999877432 3688888862 2235554 45445789998753
No 271
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=64.40 E-value=27 Score=34.99 Aligned_cols=60 Identities=20% Similarity=0.400 Sum_probs=41.2
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 007904 327 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 405 (585)
Q Consensus 327 riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vk 405 (585)
||+|.|| |-.|-.+++.|.+ .| .+++.+++. ..| +. ...++.++++.++
T Consensus 1 kilv~G~tG~iG~~l~~~l~~-----~g-------~~v~~~~r~------~~d-~~-----------~~~~~~~~~~~~~ 50 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSP-----EG-------RVVVALTSS------QLD-LT-----------DPEALERLLRAIR 50 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHh-----cC-------CEEEEeCCc------ccC-CC-----------CHHHHHHHHHhCC
Confidence 5889996 8888888887765 25 357777763 111 21 1235778888889
Q ss_pred CcEEEeccCCC
Q 007904 406 PTILIGSSGVG 416 (585)
Q Consensus 406 ptvLIG~S~~~ 416 (585)
||++|=+.+..
T Consensus 51 ~d~vi~~a~~~ 61 (287)
T TIGR01214 51 PDAVVNTAAYT 61 (287)
T ss_pred CCEEEECCccc
Confidence 99999887653
No 272
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=64.27 E-value=11 Score=33.49 Aligned_cols=88 Identities=13% Similarity=0.186 Sum_probs=49.2
Q ss_pred CcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCCcEEEe
Q 007904 332 GAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIG 411 (585)
Q Consensus 332 GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG 411 (585)
|.|..|-+++++|...-.. .++ +=..++|+++++... ............++.+.++..++|++|=
T Consensus 1 G~G~VG~~l~~~l~~~~~~-~~~------~v~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~dvvVE 65 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER-IDL------EVVGVADRSMLISKD--------WAASFPDEAFTTDLEELIDDPDIDVVVE 65 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH-CEE------EEEEEEESSEEEETT--------HHHHHTHSCEESSHHHHHTHTT-SEEEE
T ss_pred CCCHHHHHHHHHHHhCccc-CCE------EEEEEEECCchhhhh--------hhhhcccccccCCHHHHhcCcCCCEEEE
Confidence 8899999999999764211 011 446778887444332 1111122233468999999888999999
Q ss_pred ccCCCCCCCHHHHHHHHcCCCCcEEE
Q 007904 412 SSGVGRTFTKEVIEAMASFNEKPLIL 437 (585)
Q Consensus 412 ~S~~~g~Ft~evi~~Ma~~~erPIIF 437 (585)
+++ ....++-+.+.+. +..++|-
T Consensus 66 ~t~-~~~~~~~~~~~L~--~G~~VVt 88 (117)
T PF03447_consen 66 CTS-SEAVAEYYEKALE--RGKHVVT 88 (117)
T ss_dssp -SS-CHHHHHHHHHHHH--TTCEEEE
T ss_pred CCC-chHHHHHHHHHHH--CCCeEEE
Confidence 954 3344444444444 2345553
No 273
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=64.22 E-value=9.2 Score=40.88 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=28.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
||+++|+|.-|.-+++.|+.+ |+ ++|.++|.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~-----Gv------g~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLT-----GF------GEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHh-----cC------CeEEEEcCC
Confidence 689999999999999999864 87 899999987
No 274
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=64.13 E-value=13 Score=40.15 Aligned_cols=82 Identities=20% Similarity=0.304 Sum_probs=47.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCc--ccCCCccCCchhchhhccc---cCC---CCCH
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSRKDSLQHFKKPWAHE---HEP---VNNL 397 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL--i~~~r~~~l~~~k~~fa~~---~~~---~~~L 397 (585)
.+|.|+|||+=|+.+|..+.+. | -.=++|..|.+=. |-.+|. ..+|... ++. ..+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-----g-----~~V~lw~r~~~~~~~i~~~~~------N~~yLp~i~lp~~l~at~Dl 65 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-----G-----HEVRLWGRDEEIVAEINETRE------NPKYLPGILLPPNLKATTDL 65 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-----C-----CeeEEEecCHHHHHHHHhcCc------CccccCCccCCcccccccCH
Confidence 6899999999999999999873 5 1235777664311 111111 1112211 111 2578
Q ss_pred HHHhcccCCc-EEEeccCCCCCCCHHHHHHHH
Q 007904 398 LDAVKVIKPT-ILIGSSGVGRTFTKEVIEAMA 428 (585)
Q Consensus 398 ~e~v~~vkpt-vLIG~S~~~g~Ft~evi~~Ma 428 (585)
.++++. .| +|++++++ +.+++++.|.
T Consensus 66 ~~a~~~--ad~iv~avPs~---~~r~v~~~l~ 92 (329)
T COG0240 66 AEALDG--ADIIVIAVPSQ---ALREVLRQLK 92 (329)
T ss_pred HHHHhc--CCEEEEECChH---HHHHHHHHHh
Confidence 888875 44 44555553 4677777774
No 275
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=64.05 E-value=14 Score=41.10 Aligned_cols=84 Identities=12% Similarity=0.145 Sum_probs=45.6
Q ss_pred HHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCcc--CCchhch--hhcc
Q 007904 314 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD--SLQHFKK--PWAH 389 (585)
Q Consensus 314 ~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~--~l~~~k~--~fa~ 389 (585)
.++.-....|.+.|+++++.+.-..+++++|.+ .|+. +..+... .....+ .+..... ....
T Consensus 315 ~~l~~~~~~L~Gkrv~i~~g~~~~~~l~~~l~e-----lGme-------vv~~~t~---~~~~~d~~~l~~~~~~~~~v~ 379 (456)
T TIGR01283 315 PALEPYRERLKGKKAAIYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTEEDYARIRELMGEGTVML 379 (456)
T ss_pred HHHHHHHHHcCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEeee---cCCHHHHHHHHHHcCCCeEEE
Confidence 333334456788999999888888999998754 4872 2223111 111100 0111000 0000
Q ss_pred ccCCCCCHHHHhcccCCcEEEec
Q 007904 390 EHEPVNNLLDAVKVIKPTILIGS 412 (585)
Q Consensus 390 ~~~~~~~L~e~v~~vkptvLIG~ 412 (585)
+..+...+.+.++..+||++||-
T Consensus 380 ~~~d~~e~~~~i~~~~pDl~ig~ 402 (456)
T TIGR01283 380 DDANPRELLKLLLEYKADLLIAG 402 (456)
T ss_pred eCCCHHHHHHHHhhcCCCEEEEc
Confidence 11122357788899999999984
No 276
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=63.27 E-value=17 Score=38.38 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=54.7
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc---ccCCCCCHHHHh
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAV 401 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~---~~~~~~~L~e~v 401 (585)
-.++.|+|+|.-|..-++.+... .++ ++|+++|+. ..+ ...+...+.+ +-....+++|++
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~----~~i------~~v~v~~r~----~~~---~~~~~~~~~~~~~~v~~~~~~~~av 190 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAV----RPI------KEVRVYSRS----PER---AEAFAARLRDLGVPVVAVDSAEEAV 190 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHH----S--------SEEEEE-SS----HHH---HHHHHHHHHCCCTCEEEESSHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHh----CCc------eEEEEEccC----hhH---HHHHHHhhccccccceeccchhhhc
Confidence 46999999999988887776654 244 889999874 121 2222222222 111236899999
Q ss_pred cccCCcEEEeccCCCC---CCCHHHHHHHHcCCCCcEEEecCCCC-CcCCCCHHH
Q 007904 402 KVIKPTILIGSSGVGR---TFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEE 452 (585)
Q Consensus 402 ~~vkptvLIG~S~~~g---~Ft~evi~~Ma~~~erPIIFaLSNPt-~~~E~tped 452 (585)
+. .|+++.++.... +|+.++++ +.-.|-++.--+ .+.|+.++-
T Consensus 191 ~~--aDii~taT~s~~~~P~~~~~~l~------~g~hi~~iGs~~~~~~El~~~~ 237 (313)
T PF02423_consen 191 RG--ADIIVTATPSTTPAPVFDAEWLK------PGTHINAIGSYTPGMRELDDEL 237 (313)
T ss_dssp TT--SSEEEE----SSEEESB-GGGS-------TT-EEEE-S-SSTTBESB-HHH
T ss_pred cc--CCEEEEccCCCCCCccccHHHcC------CCcEEEEecCCCCchhhcCHHH
Confidence 98 999998765433 68888876 445666665322 245776653
No 277
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=63.17 E-value=11 Score=40.12 Aligned_cols=48 Identities=23% Similarity=0.290 Sum_probs=43.1
Q ss_pred cCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCc-chHHHHHHHHHHH
Q 007904 299 DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIAL 346 (585)
Q Consensus 299 DDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GA-GsAg~GIA~ll~~ 346 (585)
----+||-++.-+++.+...+|..|++..+-|+|| |..|.+||+.|..
T Consensus 141 tgns~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~ 189 (351)
T COG5322 141 TGNSHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAP 189 (351)
T ss_pred cCCccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhcc
Confidence 33347999999999999999999999999999998 9999999999865
No 278
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=63.07 E-value=26 Score=37.37 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=22.1
Q ss_pred cccceEEEeCcchHHHHHHHHHHHH
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIALE 347 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~~ 347 (585)
|++.+|.|+|+|.-|-++|..|.+.
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~s 25 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDS 25 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHC
Confidence 5688999999999999999998763
No 279
>PRK00536 speE spermidine synthase; Provisional
Probab=62.76 E-value=13 Score=38.95 Aligned_cols=101 Identities=16% Similarity=0.172 Sum_probs=59.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCC-CCHHHHhccc
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNLLDAVKVI 404 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~-~~L~e~v~~v 404 (585)
.||+|+|+|-. |+++-+++. - +++.|||-++-|++--.+.++..+.-|..++-.. ..+.+.- .-
T Consensus 74 k~VLIiGGGDG--g~~REvLkh-----~-------~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~-~~ 138 (262)
T PRK00536 74 KEVLIVDGFDL--ELAHQLFKY-----D-------THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD-IK 138 (262)
T ss_pred CeEEEEcCCch--HHHHHHHCc-----C-------CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhcc-CC
Confidence 89999999998 456666553 1 3899999998777543333555444443221111 1122211 13
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccCcEEEecCCCC
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPF 469 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Grai~AsGSPf 469 (585)
+-||+|-=|. |+++-.+.+. .+++ -+|-.+.-+||||
T Consensus 139 ~fDVIIvDs~----~~~~fy~~~~-----------------------~~L~-~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 139 KYDLIICLQE----PDIHKIDGLK-----------------------RMLK-EDGVFISVAKHPL 175 (262)
T ss_pred cCCEEEEcCC----CChHHHHHHH-----------------------HhcC-CCcEEEECCCCcc
Confidence 5788886553 6666655443 3333 3566677788887
No 280
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=62.17 E-value=2e+02 Score=30.96 Aligned_cols=113 Identities=16% Similarity=0.128 Sum_probs=71.8
Q ss_pred HHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC--------cCCCCHHHHhccccCcEEEec-CC
Q 007904 397 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS--------QSECTAEEAYTWSKGRAIFAS-GS 467 (585)
Q Consensus 397 L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~--------~~E~tpeda~~wt~Grai~As-GS 467 (585)
+.++=+.+||+++|+.++.+ +.-.-+.+=.++-+|=|.+=.-||.. ..+.|.+++++-+ ..+..+ |-
T Consensus 101 f~~l~~~~~~~aIlASNTSs--l~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~--~~~~~~igK 176 (307)
T COG1250 101 FAELEALAKPDAILASNTSS--LSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERV--VEFAKKIGK 176 (307)
T ss_pred HHHHHhhcCCCcEEeeccCC--CCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCHHHHHHH--HHHHHHcCC
Confidence 33444556899999987754 33332322224555658888999974 3567777766532 111111 21
Q ss_pred CCCcceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHHHHH
Q 007904 468 PFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALA 518 (585)
Q Consensus 468 Pf~pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~aLA 518 (585)
.||. ..+.||-.=|-..+|.+.-+..+..---.|.+.+-++.+.-+
T Consensus 177 --~~vv---~~D~pGFi~NRil~~~~~eA~~l~~eGva~~e~ID~~~~~~~ 222 (307)
T COG1250 177 --TPVV---VKDVPGFIVNRLLAALLNEAIRLLEEGVATPEEIDAAMRQGL 222 (307)
T ss_pred --CCEe---ecCCCceehHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcc
Confidence 1122 357899999999999998888888777688888888777533
No 281
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=61.97 E-value=27 Score=41.29 Aligned_cols=108 Identities=17% Similarity=0.123 Sum_probs=63.5
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC--------cCCCCHHHHhccccCcEEEecCCCCC
Q 007904 399 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS--------QSECTAEEAYTWSKGRAIFASGSPFD 470 (585)
Q Consensus 399 e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~--------~~E~tpeda~~wt~Grai~AsGSPf~ 470 (585)
++=+.++|+++|..++.. +.-.-|....++-+|=|.+=..||.. ..+-|.++..++..- |+..-=..
T Consensus 413 ~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~---~~~~lgk~ 487 (715)
T PRK11730 413 EVEQKVREDTILASNTST--ISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVA---YASKMGKT 487 (715)
T ss_pred HHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHH---HHHHhCCc
Confidence 333456899999877743 55444444444555558888999973 234444444443210 11111245
Q ss_pred cceeCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHHH
Q 007904 471 PFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASE 515 (585)
Q Consensus 471 pv~~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA~ 515 (585)
||..+ +.||-.=|-..+|-+--++.+...- .|.+.+-.|.+
T Consensus 488 pv~v~---d~pGfv~nRi~~~~~~ea~~lv~~G-a~~e~ID~a~~ 528 (715)
T PRK11730 488 PIVVN---DCPGFFVNRVLFPYFAGFSQLLRDG-ADFRQIDKVME 528 (715)
T ss_pred eEEec---CcCchhHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 66552 6789888988888776665554443 66666666543
No 282
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=61.90 E-value=7.1 Score=40.69 Aligned_cols=33 Identities=33% Similarity=0.568 Sum_probs=27.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
-..|-|+|||-.|-|||+....+ |+ ++|++|+.
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~s-----g~-------~V~l~d~~ 43 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATS-----GL-------NVWLVDAN 43 (298)
T ss_pred ccceEEEcccccchhHHHHHHhc-----CC-------ceEEecCC
Confidence 35688999999999999988774 75 69999985
No 283
>PRK06270 homoserine dehydrogenase; Provisional
Probab=61.77 E-value=56 Score=35.04 Aligned_cols=105 Identities=16% Similarity=0.227 Sum_probs=63.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHH---HHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchh-chhhccccC---------
Q 007904 326 HRFLFLGAGEAGTGIAELIALE---ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF-KKPWAHEHE--------- 392 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~---~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~-k~~fa~~~~--------- 392 (585)
.||.++|.|..|-+++++|.+. +.++.|+. -+=.-++|++|.+.+.+. ++.. -..++.+..
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~----~~vvai~d~~~~~~~~~G--i~~~~~~~~~~~~~~~~~~~~~~ 76 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLD----LKVVAIADSSGSAIDPDG--LDLELALKVKEETGKLADYPEGG 76 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCCcccCcCC--CCHHHHHHHHhccCCcccCcccc
Confidence 5899999999999999998753 22222431 122457899998887653 3221 122222111
Q ss_pred CCCCHHHHhcccCCcEEEeccCC---CCCCCHHHHHHHHcCCCCcEEE
Q 007904 393 PVNNLLDAVKVIKPTILIGSSGV---GRTFTKEVIEAMASFNEKPLIL 437 (585)
Q Consensus 393 ~~~~L~e~v~~vkptvLIG~S~~---~g~Ft~evi~~Ma~~~erPIIF 437 (585)
...++.|+++...+|++|=++.. ++-...++++...+ +..+||.
T Consensus 77 ~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~-~GkhVVt 123 (341)
T PRK06270 77 GEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALE-RGKHVVT 123 (341)
T ss_pred ccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHH-CCCEEEc
Confidence 12378999988889999977653 12222455444333 3578877
No 284
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=61.73 E-value=9.5 Score=38.08 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=25.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+++|+|||.||+..|..|.+ .|+ ++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~-----~g~-------~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR-----ANL-------KTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CCC-------CEEEEecc
Confidence 68999999999999988754 263 58899975
No 285
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=61.62 E-value=12 Score=35.80 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=29.1
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+|++.+|||+|+|..|.-.++.|+++ | .++.+++.+
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~-----g-------a~V~VIsp~ 45 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDT-----G-------AFVTVVSPE 45 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEcCc
Confidence 57899999999999999988888763 4 467777643
No 286
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=61.38 E-value=12 Score=37.43 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=30.0
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+|++.|+||+|+|..|..-++.|+.+ | .++.+++.+
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~-----g-------a~VtVvsp~ 41 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKA-----G-------AQLRVIAEE 41 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHC-----C-------CEEEEEcCC
Confidence 47889999999999999999888874 5 468888774
No 287
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=61.05 E-value=12 Score=37.20 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=28.9
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcC
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 368 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 368 (585)
+|++.++||+|+|..|.-.++.|+++ | .+|++++.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~-----g-------a~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKY-----G-------AHIVVISP 41 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEcC
Confidence 47899999999999998888888763 4 47888865
No 288
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=60.83 E-value=5.5 Score=42.62 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 007904 326 HRFLFLGAGEAGTGIAELIALE 347 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~ 347 (585)
.+|+|+|||-||+..|..|.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 4799999999999999999874
No 289
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=60.15 E-value=39 Score=36.65 Aligned_cols=33 Identities=15% Similarity=0.395 Sum_probs=27.0
Q ss_pred cceEEEeC-cchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 325 EHRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 325 d~riv~~G-AGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
..+|.|+| +|..|-.+|..+.++ |. .++++|++
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~-----G~-------~V~~~d~~ 131 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLS-----GY-------QVRILEQD 131 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHC-----CC-------eEEEeCCC
Confidence 37899998 999999999998763 63 48888874
No 290
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=59.98 E-value=92 Score=33.53 Aligned_cols=93 Identities=15% Similarity=0.189 Sum_probs=62.3
Q ss_pred hCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhh-ccccCCCCCH
Q 007904 319 IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNNL 397 (585)
Q Consensus 319 ~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~f-a~~~~~~~~L 397 (585)
.|..+...++-|+|.|..|..+|+.+. ++ |+ +|...|++.. +...+.+ ++ .-+|
T Consensus 140 ~~~~l~gktvGIiG~GrIG~avA~r~~-~F----gm-------~v~y~~~~~~---------~~~~~~~~~~----y~~l 194 (324)
T COG1052 140 LGFDLRGKTLGIIGLGRIGQAVARRLK-GF----GM-------KVLYYDRSPN---------PEAEKELGAR----YVDL 194 (324)
T ss_pred cccCCCCCEEEEECCCHHHHHHHHHHh-cC----CC-------EEEEECCCCC---------hHHHhhcCce----eccH
Confidence 346788999999999999999999997 53 65 4666766532 1111111 11 1238
Q ss_pred HHHhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEecCC
Q 007904 398 LDAVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSN 441 (585)
Q Consensus 398 ~e~v~~vkptvLIG~S~----~~g~Ft~evi~~Ma~~~erPIIFaLSN 441 (585)
.|.++. .|+|+-..- .-++|+++.++.|. +.-+|.=.|.
T Consensus 195 ~ell~~--sDii~l~~Plt~~T~hLin~~~l~~mk---~ga~lVNtaR 237 (324)
T COG1052 195 DELLAE--SDIISLHCPLTPETRHLINAEELAKMK---PGAILVNTAR 237 (324)
T ss_pred HHHHHh--CCEEEEeCCCChHHhhhcCHHHHHhCC---CCeEEEECCC
Confidence 899987 899885431 12689999999996 4556554443
No 291
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=59.88 E-value=36 Score=35.15 Aligned_cols=36 Identities=25% Similarity=0.317 Sum_probs=26.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+||.|+|+|.-|..+|..|... |.. -..+++++|++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~-----g~~---~~~~V~~~~r~ 37 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLET-----EVA---TPEEIILYSSS 37 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CCC---CcccEEEEeCC
Confidence 4799999999999999988753 420 12467777763
No 292
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=59.55 E-value=16 Score=39.36 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=18.4
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 007904 327 RFLFLGAGEAGTGIAELIAL 346 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~ 346 (585)
||.|+|||+-|+.+|..+..
T Consensus 1 kI~VIGaG~wGtALA~~la~ 20 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE 20 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 68999999999999999975
No 293
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=59.44 E-value=12 Score=40.05 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=27.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
.+|+|+|||-+|+.+|-.|.+. | .++.++|++-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-----g-------~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-----G-------YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 4899999999999999988763 5 4688999864
No 294
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=59.41 E-value=26 Score=36.64 Aligned_cols=103 Identities=12% Similarity=0.091 Sum_probs=54.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchh--chhhccccCCC-CCHHHH
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF--KKPWAHEHEPV-NNLLDA 400 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~--k~~fa~~~~~~-~~L~e~ 400 (585)
...||.|+|+|+-|..+|-.|.++ | .++.++++... ..-+...+.-. ...+....... .+. +.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~-----g-------~~V~~~~r~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 69 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARA-----G-------FDVHFLLRSDY-EAVRENGLQVDSVHGDFHLPPVQAYRSA-ED 69 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEEeCCH-HHHHhCCeEEEeCCCCeeecCceEEcch-hh
Confidence 446899999999999999888663 4 34556655321 11100111000 00000000011 122 22
Q ss_pred hcccCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 007904 401 VKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 444 (585)
Q Consensus 401 v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~-~erPIIFaLSNPt~ 444 (585)
+. .+|++| ++... .-++++++.+... .+..+|..|-|=-.
T Consensus 70 ~~--~~D~vi-lavK~-~~~~~~~~~l~~~~~~~~~iv~lqNG~~ 110 (313)
T PRK06249 70 MP--PCDWVL-VGLKT-TANALLAPLIPQVAAPDAKVLLLQNGLG 110 (313)
T ss_pred cC--CCCEEE-EEecC-CChHhHHHHHhhhcCCCCEEEEecCCCC
Confidence 33 367776 44332 3468888888654 35667888988764
No 295
>PLN02688 pyrroline-5-carboxylate reductase
Probab=59.21 E-value=39 Score=34.11 Aligned_cols=94 Identities=18% Similarity=0.287 Sum_probs=54.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEE-cCCCcccCCCccCCchhchhhcccc-CCCCCHHHHhccc
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVI 404 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lv-D~~GLi~~~r~~~l~~~k~~fa~~~-~~~~~L~e~v~~v 404 (585)
||.|+|.|..|..||+-|++. |.- -..+|+++ |+. ..+ . +.+.... ....+..|+++.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~-----g~~---~~~~i~v~~~r~----~~~---~----~~~~~~g~~~~~~~~e~~~~- 61 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVAS-----GVV---PPSRISTADDSN----PAR---R----DVFQSLGVKTAASNTEVVKS- 61 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHC-----CCC---CcceEEEEeCCC----HHH---H----HHHHHcCCEEeCChHHHHhc-
Confidence 689999999999999998753 420 12367877 552 111 1 1122111 122467777765
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCC
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 443 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma~~-~erPIIFaLSNPt 443 (585)
.|++| ++..+ ...+++++..... .+..+|..+++.+
T Consensus 62 -aDvVi-l~v~~-~~~~~vl~~l~~~~~~~~~iIs~~~g~ 98 (266)
T PLN02688 62 -SDVII-LAVKP-QVVKDVLTELRPLLSKDKLLVSVAAGI 98 (266)
T ss_pred -CCEEE-EEECc-HHHHHHHHHHHhhcCCCCEEEEecCCC
Confidence 67665 33333 3477887777543 3445666665554
No 296
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=59.14 E-value=12 Score=40.12 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=26.9
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcc
Q 007904 328 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 372 (585)
Q Consensus 328 iv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi 372 (585)
|+|+|||.||..+|..+.++ ..| .++.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~---~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA---RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc---CCC-------CEEEEEcCCccc
Confidence 78999999999999998443 123 578899886443
No 297
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=58.84 E-value=6.5 Score=41.28 Aligned_cols=36 Identities=11% Similarity=0.282 Sum_probs=26.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCc
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 371 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 371 (585)
+|||+|+|.||+-.|+.+...+ . ...+|.++|++.-
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~----~-----~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKP----L-----PGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcC----C-----CCCEEEEECCCCC
Confidence 5999999999998888875421 0 1357999997654
No 298
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=58.71 E-value=36 Score=33.12 Aligned_cols=35 Identities=29% Similarity=0.294 Sum_probs=24.1
Q ss_pred cccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 323 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 323 l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+++.+++|.|+ |..|..+|+.+++ .| .+++++++.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~-----~g-------~~v~~~~r~ 37 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAK-----EG-------AKVVIADLN 37 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 45678999996 6666666666654 36 368888774
No 299
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=58.21 E-value=42 Score=35.29 Aligned_cols=105 Identities=16% Similarity=0.209 Sum_probs=62.5
Q ss_pred hCCCcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchh----------chhh
Q 007904 319 IGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF----------KKPW 387 (585)
Q Consensus 319 ~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~----------k~~f 387 (585)
++..++..||+|.|| |-.|.-+++.|++. | .+++.+|+. ..+....+... +..|
T Consensus 9 ~~~~~~~~~vlVtGatGfiG~~lv~~L~~~-----g-------~~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (348)
T PRK15181 9 TKLVLAPKRWLITGVAGFIGSGLLEELLFL-----N-------QTVIGLDNF---STGYQHNLDDVRTSVSEEQWSRFIF 73 (348)
T ss_pred hcccccCCEEEEECCccHHHHHHHHHHHHC-----C-------CEEEEEeCC---CCcchhhhhhhhhccccccCCceEE
Confidence 445567789999997 99998888888752 5 257777763 11110011110 0111
Q ss_pred cc-ccCCCCCHHHHhcccCCcEEEeccCCCCC----------------CCHHHHHHHHcCCCCcEEEecC
Q 007904 388 AH-EHEPVNNLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILALS 440 (585)
Q Consensus 388 a~-~~~~~~~L~e~v~~vkptvLIG~S~~~g~----------------Ft~evi~~Ma~~~erPIIFaLS 440 (585)
-. +-.....|.++++. ||++|=+.+.... .|..+++.+.++.-+.+||+=|
T Consensus 74 ~~~Di~d~~~l~~~~~~--~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS 141 (348)
T PRK15181 74 IQGDIRKFTDCQKACKN--VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAAS 141 (348)
T ss_pred EEccCCCHHHHHHHhhC--CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Confidence 11 11112346677774 9999988775432 2457888887765568998754
No 300
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=58.17 E-value=11 Score=40.64 Aligned_cols=31 Identities=32% Similarity=0.496 Sum_probs=24.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+|+|+|||.||...|..+.. .|+ ++.++|++
T Consensus 2 ~VvIVGaGPAG~~aA~~la~-----~G~-------~V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLAS-----AGI-------QTFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 69999999999999988765 364 46666654
No 301
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=57.67 E-value=43 Score=34.46 Aligned_cols=31 Identities=13% Similarity=0.157 Sum_probs=25.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
||.|+|+|..|..+|..|.+. | .+++++|++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-----g-------~~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-----G-------HTVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-----C-------CEEEEEECC
Confidence 799999999999999988653 5 257888874
No 302
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=57.61 E-value=13 Score=41.11 Aligned_cols=36 Identities=17% Similarity=0.394 Sum_probs=29.0
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
..-+++|+|||.+|+++|.-|.++ |++ ++.++|+..
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~-----g~~------~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQA-----GVP------DFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHc-----CCC------cEEEEEccC
Confidence 346899999999999999998774 763 388888864
No 303
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=57.34 E-value=12 Score=40.50 Aligned_cols=40 Identities=25% Similarity=0.412 Sum_probs=34.2
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCc
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 371 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 371 (585)
.++++|=||++|||..|-=++++|+.. |+ ++|.++|-+-.
T Consensus 70 ~kl~~syVVVVG~GgVGSwv~nmL~RS-----G~------qKi~iVDfdqV 109 (430)
T KOG2018|consen 70 EKLTNSYVVVVGAGGVGSWVANMLLRS-----GV------QKIRIVDFDQV 109 (430)
T ss_pred HHhcCcEEEEEecCchhHHHHHHHHHh-----cC------ceEEEechhhc
Confidence 468899999999999999999999875 76 78889887643
No 304
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=57.09 E-value=11 Score=39.89 Aligned_cols=73 Identities=14% Similarity=0.211 Sum_probs=48.9
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCC----CCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP----VNN 396 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~----~~~ 396 (585)
++|...+|+++|+|.-|.-+|+-|+.+ |+ ++|.++|.+-. ..+ +|. ..|-.+..- ...
T Consensus 22 ~KL~~SrVLVVG~GGLGsEVAKnLaLA-----GV------GsItIvDdD~V-e~S---NL~---RQfl~~~dvGk~KAea 83 (287)
T PTZ00245 22 QQLMHTSVALHGVAGAAAEAAKNLVLA-----GV------RAVAVADEGLV-TDA---DVC---TNYLMQGEAGGTRGAR 83 (287)
T ss_pred HHHhhCeEEEECCCchHHHHHHHHHHc-----CC------CeEEEecCCcc-chh---hhc---cccccccccCCcHHHH
Confidence 578899999999999999999998775 87 78999998732 211 132 222221111 124
Q ss_pred HHHHhcccCCcEEEe
Q 007904 397 LLDAVKVIKPTILIG 411 (585)
Q Consensus 397 L~e~v~~vkptvLIG 411 (585)
..+-++..+|+|-|=
T Consensus 84 Aa~~L~eLNP~V~V~ 98 (287)
T PTZ00245 84 ALGALQRLNPHVSVY 98 (287)
T ss_pred HHHHHHHHCCCcEEE
Confidence 556677778887773
No 305
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=57.00 E-value=13 Score=39.79 Aligned_cols=31 Identities=23% Similarity=0.370 Sum_probs=23.8
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.|+|+|||.||...|..|.+. |+ ++.++|++
T Consensus 2 DVvIVGaGpAG~~aA~~La~~-----G~-------~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARA-----GI-------ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEECC
Confidence 489999999999999887653 64 46666665
No 306
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=56.79 E-value=11 Score=35.28 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=28.3
Q ss_pred EEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCc
Q 007904 329 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 371 (585)
Q Consensus 329 v~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 371 (585)
+|+|+|.+|+.++..|++.. .....-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-------~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-------DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-------CCCCCCEEEEEcCCCc
Confidence 48999999999999998863 1123568999999755
No 307
>PRK06847 hypothetical protein; Provisional
Probab=56.62 E-value=14 Score=38.62 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=25.3
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
..+|+|+|||.||+..|..|.+ .|+ ++.++++.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~-----~g~-------~v~v~E~~ 36 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRR-----AGI-------AVDLVEID 36 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHh-----CCC-------CEEEEecC
Confidence 4689999999999999988865 365 35666654
No 308
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=56.53 E-value=14 Score=38.40 Aligned_cols=32 Identities=31% Similarity=0.543 Sum_probs=25.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.||.|+|||..|.|||..++.+ |. +++++|..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-----G~-------~V~l~d~~ 37 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-----GV-------DVLVFETT 37 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECC
Confidence 4899999999999999988764 63 57777753
No 309
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=56.06 E-value=1e+02 Score=35.30 Aligned_cols=185 Identities=22% Similarity=0.255 Sum_probs=113.3
Q ss_pred hhHHHHHHHHHHHHHhcCCceeeeeecCCCchHH---HHHHHHcCC-----Ce-----ee----ccCCCchHHHHHHHHH
Q 007904 251 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF---ELLAKYGTT-----HL-----VF----NDDIQGTASVVLAGVV 313 (585)
Q Consensus 251 ~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af---~lL~ryr~~-----~~-----~F----nDDiQGTaaV~lAgll 313 (585)
|-..+.-.||..+.+--||..=+==+|++ ...+ -+++.|+.. -| .- |+-.-.|+-=+..+.=
T Consensus 159 Ei~r~~~~f~~el~~~iGp~~DvPapdig-~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~~ATG~GV~~y~e 237 (514)
T KOG2250|consen 159 EIERITRRFTDELIDIIGPDTDVPAPDIG-TGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRYEATGRGVVYYVE 237 (514)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCccccc-cCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcccccchhHHHHHH
Confidence 34455566777777777887767777776 3333 378888731 11 11 3444445544444443
Q ss_pred HHHHHhC--CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhch-hhccc
Q 007904 314 AALKLIG--GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK-PWAHE 390 (585)
Q Consensus 314 ~A~r~~g--~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~-~fa~~ 390 (585)
+=+.-.+ +++++.||++-|-|--|.-.|..|.+. |- +-|-+-|++|.|.... .+++.+. .++..
T Consensus 238 ~~~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~-----G~------kvvavsD~~G~l~np~--Gid~~eL~~~~~~ 304 (514)
T KOG2250|consen 238 AILNDANGKKGIKGKRVVIQGFGNVGGHAAKKLSEK-----GA------KVVAVSDSKGVLINPD--GIDIEELLDLADE 304 (514)
T ss_pred HHHHhccCCCCcCceEEEEeCCCchHHHHHHHHHhc-----CC------EEEEEEcCceeEECCC--CCCHHHHHHHHHh
Confidence 3344444 789999999999999998888877764 42 6688899999998764 3544332 23322
Q ss_pred cCCCCCHHHH--------------hcccCCcEEEeccCCCCCCCHHHHHH-HHcCCCCcEEEecCC-CCCcCCCCHHHHh
Q 007904 391 HEPVNNLLDA--------------VKVIKPTILIGSSGVGRTFTKEVIEA-MASFNEKPLILALSN-PTSQSECTAEEAY 454 (585)
Q Consensus 391 ~~~~~~L~e~--------------v~~vkptvLIG~S~~~g~Ft~evi~~-Ma~~~erPIIFaLSN-Pt~~~E~tpeda~ 454 (585)
...+.++.++ .-.-+.|+++=|.++ +..|.+=... -+++| |+|.==|| ||. || +.+++
T Consensus 305 k~~i~~f~~~~~~~~~~~~~~~~~~~v~~~DI~vPCA~q-n~I~~~nA~~lvak~~--~~IvEGAN~ptT-pe--A~~vl 378 (514)
T KOG2250|consen 305 KKTIKSFDGAKLSYEGYIAGLPPWTLVEKCDILVPCATQ-NEITGENAKALVAKGC--KYIVEGANMPTT-PE--ADEVL 378 (514)
T ss_pred hccccccccccccCccccccCcchhhHhhCcEEeecCcc-CcccHhhHHHHHhcCC--cEEEecCCCCCC-hh--HHHHH
Confidence 2222221111 111258999999998 5776655544 46666 89998999 653 33 33555
Q ss_pred c
Q 007904 455 T 455 (585)
Q Consensus 455 ~ 455 (585)
+
T Consensus 379 e 379 (514)
T KOG2250|consen 379 E 379 (514)
T ss_pred H
Confidence 5
No 310
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=55.72 E-value=2.5e+02 Score=28.83 Aligned_cols=43 Identities=23% Similarity=0.211 Sum_probs=32.1
Q ss_pred CHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccCcEEEecC
Q 007904 420 TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASG 466 (585)
Q Consensus 420 t~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Grai~AsG 466 (585)
+++.+++.++..+.|+++-++.... +.+++|.-++ |-.++.-|
T Consensus 184 ~~~~~~~~~~~~~~Pl~~~~~~~~~--~~~~~~l~~l--G~~~v~~~ 226 (243)
T cd00377 184 DPEEIRAFAEAPDVPLNVNMTPGGN--LLTVAELAEL--GVRRVSYG 226 (243)
T ss_pred CHHHHHHHHhcCCCCEEEEecCCCC--CCCHHHHHHC--CCeEEEEC
Confidence 8899999998889999987655442 6899999887 54444433
No 311
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=55.72 E-value=21 Score=36.82 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=28.8
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEecCCCC
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPT 443 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma--~~~erPIIFaLSNPt 443 (585)
+-|++||+|..|. |++++..+. +...-|+|.=-+||.
T Consensus 118 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~I~It~~~~ 156 (257)
T cd05007 118 ERDVVIGIAASGR--TPYVLGALRYARARGALTIGIACNPG 156 (257)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 6799999999886 999998874 444567777667776
No 312
>PRK06184 hypothetical protein; Provisional
Probab=55.04 E-value=15 Score=40.78 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=27.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
++..|+|+|||.+|+..|-+|.+ .|+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~-----~Gi-------~v~viE~~~ 36 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELAR-----RGV-------SFRLIEKAP 36 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCCC
Confidence 45689999999999999988865 376 477777753
No 313
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=54.86 E-value=16 Score=40.74 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.3
Q ss_pred CcccceEEEeCcchHHHHHHHHHHH
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIAL 346 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~ 346 (585)
+....+|+|+|||.||+..|..+.+
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~ 31 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRR 31 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHh
Confidence 4456899999999999999988865
No 314
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=54.80 E-value=43 Score=34.47 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=25.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
||.|+|+|..|..+|..|... |. +++++|+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-----G~-------~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-----GY-------QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 588999999999999998753 63 57788875
No 315
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=54.80 E-value=20 Score=40.66 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=27.6
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
-...+|+|+|||.||+..|..+.. .|. ++.++|+.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~-----~G~-------~V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRR-----MGH-------AVTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 457899999999999999887754 363 48888864
No 316
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=54.74 E-value=47 Score=35.14 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=26.2
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCC--CcEEEecCCCC
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMASFNE--KPLILALSNPT 443 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma~~~e--rPIIFaLSNPt 443 (585)
+-|++||+|..|. |++++..+....+ -|+|.=-+||.
T Consensus 127 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~IaIT~~~~ 165 (296)
T PRK12570 127 ADDVVVGIAASGR--TPYVIGALEYAKQIGATTIALSCNPD 165 (296)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 5699999999886 8999988854333 35544444555
No 317
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.70 E-value=17 Score=39.55 Aligned_cols=36 Identities=31% Similarity=0.504 Sum_probs=28.1
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+++.+++|+|+|.+|.++|+.|... | .+++++|++
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~-----G-------~~V~~~d~~ 37 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKL-----G-------AKVILTDEK 37 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 36778999999999999999988763 5 346666664
No 318
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=54.57 E-value=12 Score=40.84 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=25.9
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
||||+|+|.||+..|+.|.+. +- .-+|.++|+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~-----~~-----~~~I~li~~~ 35 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRL-----DK-----ESDIIIFEKD 35 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhh-----CC-----CCCEEEEECC
Confidence 899999999999999999652 21 1468888875
No 319
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=54.55 E-value=19 Score=36.38 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=27.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
.|+|+|||-+|+.+|-.|.+ .| .++.++|+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~-----~G-------~~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-----RG-------HSVTLLERGD 32 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-----TT-------SEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHH-----CC-------CeEEEEeecc
Confidence 48999999999999998876 36 4799999983
No 320
>PRK05866 short chain dehydrogenase; Provisional
Probab=54.52 E-value=30 Score=35.56 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=24.9
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 320 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 320 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+..+++.+++|.||++ ||...++..+.+ .| .++++++++
T Consensus 35 ~~~~~~k~vlItGasg---gIG~~la~~La~-~G-------~~Vi~~~R~ 73 (293)
T PRK05866 35 PVDLTGKRILLTGASS---GIGEAAAEQFAR-RG-------ATVVAVARR 73 (293)
T ss_pred CcCCCCCEEEEeCCCc---HHHHHHHHHHHH-CC-------CEEEEEECC
Confidence 4456778999999843 444444444444 36 368888875
No 321
>PRK07236 hypothetical protein; Provisional
Probab=54.40 E-value=18 Score=38.54 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.0
Q ss_pred cccceEEEeCcchHHHHHHHHHHH
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIAL 346 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~ 346 (585)
....+|+|+|||.||+..|..|.+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~ 27 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRR 27 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh
Confidence 446789999999999999998876
No 322
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=54.29 E-value=42 Score=36.60 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=25.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
||.|+|+|..|..+|..|.+. | .+++.+|++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-----G-------~~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-----G-------HEVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-----C-------CeEEEEECC
Confidence 799999999999999998753 5 357888874
No 323
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=54.29 E-value=45 Score=36.11 Aligned_cols=26 Identities=15% Similarity=0.219 Sum_probs=22.7
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHH
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALE 347 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~ 347 (585)
.|++.+|.|+|.|+.|.++|..|.+.
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~s 39 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRDS 39 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHHC
Confidence 46788999999999999999998653
No 324
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=54.23 E-value=20 Score=40.15 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=29.5
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
||+++|||..|+-+++.|+.+ |+...+ ..+|.++|.+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~-----Gv~~g~-~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM-----GVGTGE-SGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc-----CCCcCC-CCeEEEECCC
Confidence 689999999999999999875 662211 2689999986
No 325
>PRK07233 hypothetical protein; Provisional
Probab=54.16 E-value=14 Score=39.27 Aligned_cols=31 Identities=19% Similarity=0.369 Sum_probs=25.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
||+|+|||-||+..|..|.+. | .++.+++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-----G-------~~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-----G-------HEVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEEeC
Confidence 689999999999999888653 6 367888776
No 326
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=54.12 E-value=6.3 Score=42.18 Aligned_cols=91 Identities=20% Similarity=0.276 Sum_probs=51.1
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCc----hhchhhcc-ccCCCCCHHHHhc
Q 007904 328 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ----HFKKPWAH-EHEPVNNLLDAVK 402 (585)
Q Consensus 328 iv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~----~~k~~fa~-~~~~~~~L~e~v~ 402 (585)
|+|+|+|..|-.+++.|.+. ... .++.+.|++ ..+.+.+. ..+..+.. +..+..+|.+.++
T Consensus 1 IlvlG~G~vG~~~~~~L~~~----~~~------~~v~va~r~----~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~ 66 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR----GPF------EEVTVADRN----PEKAERLAEKLLGDRVEAVQVDVNDPESLAELLR 66 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT----TCE-------EEEEEESS----HHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHT
T ss_pred CEEEcCcHHHHHHHHHHhcC----CCC------CcEEEEECC----HHHHHHHHhhccccceeEEEEecCCHHHHHHHHh
Confidence 78999999999999888753 111 278888885 11100010 00111111 1122235888888
Q ss_pred ccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 007904 403 VIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 437 (585)
Q Consensus 403 ~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIF 437 (585)
. .|++|-+++.. +...++++-.+. ..+.|=
T Consensus 67 ~--~dvVin~~gp~--~~~~v~~~~i~~-g~~yvD 96 (386)
T PF03435_consen 67 G--CDVVINCAGPF--FGEPVARACIEA-GVHYVD 96 (386)
T ss_dssp T--SSEEEE-SSGG--GHHHHHHHHHHH-T-EEEE
T ss_pred c--CCEEEECCccc--hhHHHHHHHHHh-CCCeec
Confidence 7 69999988855 788888776543 334444
No 327
>PRK08163 salicylate hydroxylase; Provisional
Probab=53.91 E-value=16 Score=38.65 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.1
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 007904 325 EHRFLFLGAGEAGTGIAELIAL 346 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~ 346 (585)
..+|+|+|||.||+..|-.|.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~ 25 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR 25 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh
Confidence 4689999999999999988765
No 328
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.75 E-value=19 Score=39.72 Aligned_cols=28 Identities=18% Similarity=0.206 Sum_probs=23.6
Q ss_pred hCCCcccceEEEeCcchHHHHHHHHHHH
Q 007904 319 IGGTLAEHRFLFLGAGEAGTGIAELIAL 346 (585)
Q Consensus 319 ~g~~l~d~riv~~GAGsAg~GIA~ll~~ 346 (585)
.+..++.++++|+|+|.+|+.+|+.|.+
T Consensus 10 ~~~~~~~~~v~viG~G~~G~~~A~~L~~ 37 (480)
T PRK01438 10 WHSDWQGLRVVVAGLGVSGFAAADALLE 37 (480)
T ss_pred cccCcCCCEEEEECCCHHHHHHHHHHHH
Confidence 4556778899999999999999988864
No 329
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=53.43 E-value=19 Score=38.95 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=28.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcc
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 372 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi 372 (585)
.||||+|+|.||+..|..|.+. |- .-+|.++|++.-+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~-----~~-----~~~Vtli~~~~~~ 37 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL-----NK-----ELEITVYEKTDIV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH-----CC-----CCcEEEEECCCcc
Confidence 3899999999999999988652 21 1379999987543
No 330
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=53.31 E-value=16 Score=40.75 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=33.4
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+.|.+.+|+++|+|..|.-+++.|+.. |+ ++|.++|.+
T Consensus 16 ~~L~~s~VlliG~gglGsEilKNLvL~-----GI------g~~tIvD~~ 53 (425)
T cd01493 16 AALESAHVCLLNATATGTEILKNLVLP-----GI------GSFTIVDGS 53 (425)
T ss_pred HHHhhCeEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 457899999999999999999998875 87 789999986
No 331
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=52.84 E-value=21 Score=29.34 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=23.4
Q ss_pred EeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCc
Q 007904 330 FLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 371 (585)
Q Consensus 330 ~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 371 (585)
|+|||.+|+..|..|.+. | .++.++|++--
T Consensus 1 IiGaG~sGl~aA~~L~~~-----g-------~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-----G-------YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-----T-------SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC-----C-------CcEEEEecCcc
Confidence 789999999999888763 4 48999998643
No 332
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=52.83 E-value=3.1e+02 Score=29.19 Aligned_cols=136 Identities=13% Similarity=0.157 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcCCceeeeeecCCCchHHHHHHHHcCCCeeecc--CCCchHHHHHHHHHHHHHHhCCCcccceEEEeCc
Q 007904 256 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFND--DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA 333 (585)
Q Consensus 256 idefv~av~~~fGp~~lIq~EDf~~~~af~lL~ryr~~~~~FnD--DiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GA 333 (585)
+.+.+..+. +| .++++ +-.+... ...-+.+| ..+||.|= +..--=+=+||=++.-.+..| ++++.||+++|-
T Consensus 85 i~Dta~vls-~y-~D~iv-iR~~~~~-~~~~~a~~-s~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g~~va~vGD 158 (301)
T TIGR00670 85 LADTIKTLS-GY-SDAIV-IRHPLEG-AARLAAEV-SEVPVINAGDGSNQHPTQTLLDLYTIYEEFG-RLDGLKIALVGD 158 (301)
T ss_pred HHHHHHHHH-Hh-CCEEE-EECCchh-HHHHHHhh-CCCCEEeCCCCCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEEcc
Confidence 444444444 45 44443 3344333 33333444 47999995 343444567777777666666 699999999998
Q ss_pred chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc-C---CCCCHHHHhcccCCcEE
Q 007904 334 GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-E---PVNNLLDAVKVIKPTIL 409 (585)
Q Consensus 334 GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~-~---~~~~L~e~v~~vkptvL 409 (585)
|.=+ -+++-++.++.+ .|+ ++.++-.+|+- +++.....++.. . ...++.|+++. +||+
T Consensus 159 ~~~~-~v~~Sl~~~~a~-~g~-------~v~~~~P~~~~-------~~~~~~~~~~~~G~~v~~~~d~~~a~~~--aDvv 220 (301)
T TIGR00670 159 LKYG-RTVHSLAEALTR-FGV-------EVYLISPEELR-------MPKEILEELKAKGIKVRETESLEEVIDE--ADVL 220 (301)
T ss_pred CCCC-cHHHHHHHHHHH-cCC-------EEEEECCcccc-------CCHHHHHHHHHcCCEEEEECCHHHHhCC--CCEE
Confidence 6311 345555555544 475 57888777761 222222233221 1 13689999997 9999
Q ss_pred EeccCC
Q 007904 410 IGSSGV 415 (585)
Q Consensus 410 IG~S~~ 415 (585)
.-.+-+
T Consensus 221 yt~~~~ 226 (301)
T TIGR00670 221 YVTRIQ 226 (301)
T ss_pred EECCcc
Confidence 987654
No 333
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=52.43 E-value=55 Score=36.33 Aligned_cols=119 Identities=24% Similarity=0.270 Sum_probs=83.2
Q ss_pred cCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCcc
Q 007904 299 DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD 378 (585)
Q Consensus 299 DDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~ 378 (585)
|.-.||+--++-|++. .|..=+....+|+.|=|--|-|||..+.. .| .++++.+-
T Consensus 186 DNrYGtgqS~~DgI~R---aTn~liaGK~vVV~GYG~vGrG~A~~~rg-----~G-------A~ViVtEv---------- 240 (420)
T COG0499 186 DNRYGTGQSLLDGILR---ATNVLLAGKNVVVAGYGWVGRGIAMRLRG-----MG-------ARVIVTEV---------- 240 (420)
T ss_pred ccccccchhHHHHHHh---hhceeecCceEEEecccccchHHHHHhhc-----CC-------CeEEEEec----------
Confidence 6778999999999875 46677889999999999999999988754 24 24554332
Q ss_pred CCchhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC-CcCCCCHHH
Q 007904 379 SLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEE 452 (585)
Q Consensus 379 ~l~~~k~~fa~-~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt-~~~E~tped 452 (585)
+|.+.-=|. +.-..-++.||++. .|++|=+++.-++.+.|.++.|. .-.|.+ |-- -.-|+..+.
T Consensus 241 --DPI~AleA~MdGf~V~~m~~Aa~~--gDifiT~TGnkdVi~~eh~~~Mk----DgaIl~--N~GHFd~EI~~~~ 306 (420)
T COG0499 241 --DPIRALEAAMDGFRVMTMEEAAKT--GDIFVTATGNKDVIRKEHFEKMK----DGAILA--NAGHFDVEIDVAG 306 (420)
T ss_pred --CchHHHHHhhcCcEEEEhHHhhhc--CCEEEEccCCcCccCHHHHHhcc----CCeEEe--cccccceeccHHH
Confidence 121111111 22234578999988 89999999999999999999995 334433 322 235666554
No 334
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=52.41 E-value=20 Score=39.58 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=28.9
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+.+..+|+|+|+|.||+..|..|.+ .| .++.++|+.
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~-----~G-------~~V~vie~~ 165 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAK-----AG-------HSVTVFEAL 165 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEecC
Confidence 4457899999999999999988865 26 368888874
No 335
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=52.15 E-value=83 Score=30.02 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=18.8
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHH
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMA 428 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma 428 (585)
+-|++|++|..|. |+++++.+.
T Consensus 101 ~~Dv~I~iS~SG~--t~~~i~~~~ 122 (177)
T cd05006 101 PGDVLIGISTSGN--SPNVLKALE 122 (177)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHH
Confidence 4799999998775 999999884
No 336
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=52.02 E-value=18 Score=41.91 Aligned_cols=34 Identities=26% Similarity=0.505 Sum_probs=28.0
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+..+|+|+|+|.||+..|..|.. .|. ++.++|+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~-----~G~-------~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR-----NGV-------AVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecC
Confidence 57899999999999999988875 263 48888875
No 337
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=51.77 E-value=16 Score=38.89 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=25.7
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+.+|+|+|||.||+..|-.|.+. |+ ++.++|++
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~-----G~-------~v~v~E~~ 50 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDS-----GL-------RIALIEAQ 50 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcC-----CC-------EEEEEecC
Confidence 46899999999999999888653 64 46666654
No 338
>PRK06475 salicylate hydroxylase; Provisional
Probab=51.57 E-value=16 Score=39.03 Aligned_cols=21 Identities=38% Similarity=0.322 Sum_probs=18.6
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 007904 326 HRFLFLGAGEAGTGIAELIAL 346 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~ 346 (585)
+||+|+|||.||+..|-.|.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~ 23 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA 23 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh
Confidence 799999999999999887754
No 339
>PRK09126 hypothetical protein; Provisional
Probab=51.49 E-value=18 Score=38.23 Aligned_cols=33 Identities=27% Similarity=0.457 Sum_probs=25.3
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+..|+|+|||.||+..|-.|.+. |+ ++.++|+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~-----G~-------~v~v~E~~ 35 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGS-----GL-------KVTLIERQ 35 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-----CC-------cEEEEeCC
Confidence 45799999999999999888763 65 35666654
No 340
>PRK05993 short chain dehydrogenase; Provisional
Probab=51.32 E-value=34 Score=34.45 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=20.3
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+++|.|| |..|..+|+.+. + .| -++++++++
T Consensus 5 k~vlItGasggiG~~la~~l~----~-~G-------~~Vi~~~r~ 37 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQ----S-DG-------WRVFATCRK 37 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHH----H-CC-------CEEEEEECC
Confidence 57999998 445555555543 3 36 368888764
No 341
>PLN02268 probable polyamine oxidase
Probab=51.08 E-value=7.8 Score=41.79 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=18.6
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 007904 327 RFLFLGAGEAGTGIAELIAL 346 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~ 346 (585)
+|+|+|||-||+..|..|.+
T Consensus 2 ~VvVIGaGisGL~aA~~L~~ 21 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHD 21 (435)
T ss_pred CEEEECCCHHHHHHHHHHHh
Confidence 79999999999999999976
No 342
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=51.07 E-value=20 Score=38.71 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=26.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcc
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 372 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi 372 (585)
-.|+|+|||.||...|..+.+. |+ ++.++|++..+
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~-----G~-------~VlvlEk~~~~ 38 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKA-----GL-------DVLVLEKGSEP 38 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHc-----CC-------eEEEEecCCCC
Confidence 4689999999999999988774 64 46667765444
No 343
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=50.74 E-value=59 Score=33.44 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=25.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.||.|+|.|..|..+|..+.. .|. +++++|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~-----~g~-------~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLK-----AGY-------SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHH-----CCC-------eEEEEcCC
Confidence 479999999999999999875 253 57777764
No 344
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=50.71 E-value=47 Score=35.68 Aligned_cols=37 Identities=27% Similarity=0.232 Sum_probs=26.1
Q ss_pred CHHHHhcccCCcE-EEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 007904 396 NLLDAVKVIKPTI-LIGSSGVGRTFTKEVIEAMASFNEKPLIL 437 (585)
Q Consensus 396 ~L~e~v~~vkptv-LIG~S~~~g~Ft~evi~~Ma~~~erPIIF 437 (585)
.|.+.... .|+ ++|-|-..+ |...++++|+ +..|||+
T Consensus 312 el~~~y~~--aDi~~v~~S~~e~-~g~~~lEAma--~G~PVI~ 349 (425)
T PRK05749 312 ELGLLYAI--ADIAFVGGSLVKR-GGHNPLEPAA--FGVPVIS 349 (425)
T ss_pred HHHHHHHh--CCEEEECCCcCCC-CCCCHHHHHH--hCCCEEE
Confidence 45566665 787 677665333 5556899998 7889997
No 345
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=50.68 E-value=72 Score=31.95 Aligned_cols=78 Identities=13% Similarity=0.221 Sum_probs=43.3
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchh----chhhcc-ccCCCCCHHHH
Q 007904 327 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF----KKPWAH-EHEPVNNLLDA 400 (585)
Q Consensus 327 riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~----k~~fa~-~~~~~~~L~e~ 400 (585)
+|+|.|| |..|-.+++.|++. |- ..+++.+|+... ..+.+.+... ...+.. +-....++.++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-----~~-----~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 68 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-----HP-----DAEVIVLDKLTY--AGNLENLADLEDNPRYRFVKGDIGDRELVSRL 68 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-----CC-----CCEEEEecCCCc--chhhhhhhhhccCCCcEEEEcCCcCHHHHHHH
Confidence 5788887 78887777777553 31 136777775211 0111111111 111111 22223467888
Q ss_pred hcccCCcEEEeccCCC
Q 007904 401 VKVIKPTILIGSSGVG 416 (585)
Q Consensus 401 v~~vkptvLIG~S~~~ 416 (585)
++..+||++|=+++..
T Consensus 69 ~~~~~~d~vi~~a~~~ 84 (317)
T TIGR01181 69 FTEHQPDAVVHFAAES 84 (317)
T ss_pred HhhcCCCEEEEccccc
Confidence 8888899999888753
No 346
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=50.66 E-value=21 Score=39.60 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=27.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
...+|+|+|+|.||+..|..+.. .|. ++.++|+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~-----~G~-------~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLAR-----AGH-------KVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEecC
Confidence 45799999999999999988765 263 58889875
No 347
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=50.61 E-value=18 Score=38.19 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=24.8
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 328 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 328 iv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
|+|+|||.||+..|..+.+ .|+ ++.++|++.
T Consensus 2 viIiGaG~AGl~~A~~la~-----~g~-------~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELAR-----PGL-------RVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHh-----CCC-------eEEEEccCC
Confidence 7999999999999977653 264 688899764
No 348
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.60 E-value=81 Score=35.34 Aligned_cols=89 Identities=16% Similarity=0.219 Sum_probs=49.3
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhc
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 402 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~ 402 (585)
+.++|++|+|.|..|+..+++|.. .|. ++.+.|.+ ..+ +...++ +--.........+.++
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~-----~G~-------~v~~~D~~----~~~---~~~l~~-~g~~~~~~~~~~~~l~ 69 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTR-----FGA-------RPTVCDDD----PDA---LRPHAE-RGVATVSTSDAVQQIA 69 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHH-----CCC-------EEEEEcCC----HHH---HHHHHh-CCCEEEcCcchHhHhh
Confidence 356899999999999999986654 363 57778854 111 111111 0000001112234454
Q ss_pred ccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEE
Q 007904 403 VIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLI 436 (585)
Q Consensus 403 ~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPII 436 (585)
. +|++|=.++.+ .-.+++.++.. ..-||+
T Consensus 70 ~--~D~VV~SpGi~-~~~p~~~~a~~--~gi~v~ 98 (488)
T PRK03369 70 D--YALVVTSPGFR-PTAPVLAAAAA--AGVPIW 98 (488)
T ss_pred c--CCEEEECCCCC-CCCHHHHHHHH--CCCcEe
Confidence 4 78888666666 34555555443 356776
No 349
>PRK12829 short chain dehydrogenase; Provisional
Probab=50.48 E-value=52 Score=32.21 Aligned_cols=37 Identities=27% Similarity=0.421 Sum_probs=23.1
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+++.+++|.||. . ||...++..+.+ .|. ++++++++
T Consensus 8 ~~~~~~vlItGa~-g--~iG~~~a~~L~~-~g~-------~V~~~~r~ 44 (264)
T PRK12829 8 PLDGLRVLVTGGA-S--GIGRAIAEAFAE-AGA-------RVHVCDVS 44 (264)
T ss_pred ccCCCEEEEeCCC-C--cHHHHHHHHHHH-CCC-------EEEEEeCC
Confidence 3788999999984 1 333444444433 363 58888763
No 350
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=50.47 E-value=38 Score=35.27 Aligned_cols=74 Identities=14% Similarity=0.225 Sum_probs=47.1
Q ss_pred ccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc-------CCCC
Q 007904 324 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-------EPVN 395 (585)
Q Consensus 324 ~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~-------~~~~ 395 (585)
...+||++.. ++.++|-+- .+|+. .|+ +++++|+.+= .+++.-..+|... .-..
T Consensus 3 ~~i~iVLVep~~~gNIG~vA---RaMKN-fGl------~eL~LV~Pr~--------~~~eeA~a~A~gA~dile~A~i~~ 64 (242)
T COG0565 3 ENIRIVLVEPSHPGNIGSVA---RAMKN-FGL------SELRLVNPRA--------GLDEEARALAAGARDILENAKIVD 64 (242)
T ss_pred CccEEEEEcCCCCccHHHHH---HHHHh-CCc------ceEEEECCCC--------CCCHHHHHHhccchhhhccCeeec
Confidence 4567777764 566676543 44444 598 5699988751 2344444444321 1236
Q ss_pred CHHHHhcccCCcEEEeccCCCC
Q 007904 396 NLLDAVKVIKPTILIGSSGVGR 417 (585)
Q Consensus 396 ~L~e~v~~vkptvLIG~S~~~g 417 (585)
||.|+|.. .+.+||+|+...
T Consensus 65 tL~eAl~d--~~~v~aTtar~r 84 (242)
T COG0565 65 TLEEALAD--CDLVVATTARSR 84 (242)
T ss_pred CHHHHhcC--CCEEEEeccccC
Confidence 99999997 999999997654
No 351
>PRK12828 short chain dehydrogenase; Provisional
Probab=50.44 E-value=28 Score=33.28 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=23.8
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 322 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 322 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
++++.+++|.|| |..|..+++.+++ .|. +++++|++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~-----~G~-------~v~~~~r~ 40 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAA-----RGA-------RVALIGRG 40 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 466789999997 5555555555543 363 58888874
No 352
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=50.21 E-value=23 Score=38.58 Aligned_cols=85 Identities=9% Similarity=0.148 Sum_probs=46.3
Q ss_pred HHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc----
Q 007904 314 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---- 389 (585)
Q Consensus 314 ~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~---- 389 (585)
.++.-....|.+.|++|+|.+.-..++++++.+ .|+. +..+-.. .... +.....+..+..
T Consensus 276 ~~l~~~~~~l~gkrv~i~~~~~~~~~la~~l~e-----lGm~-------v~~~~~~---~~~~-~~~~~~~~~~~~~~~v 339 (410)
T cd01968 276 PELAPYRARLEGKKAALYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTK-EDYERIKELLGEGTVI 339 (410)
T ss_pred HHHHHHHHHhCCCEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEecc---cCCH-HHHHHHHHHhCCCcEE
Confidence 344444456778999999988888999987754 4883 3333111 1111 101111111100
Q ss_pred -ccCCCCCHHHHhcccCCcEEEeccC
Q 007904 390 -EHEPVNNLLDAVKVIKPTILIGSSG 414 (585)
Q Consensus 390 -~~~~~~~L~e~v~~vkptvLIG~S~ 414 (585)
...+...+.+.++..+||++||-|.
T Consensus 340 ~~~~~~~e~~~~i~~~~pDl~ig~s~ 365 (410)
T cd01968 340 VDDANPRELKKLLKEKKADLLVAGGK 365 (410)
T ss_pred EeCCCHHHHHHHHhhcCCCEEEECCc
Confidence 0111123668888899999999754
No 353
>PLN02240 UDP-glucose 4-epimerase
Probab=50.20 E-value=35 Score=35.28 Aligned_cols=107 Identities=17% Similarity=0.178 Sum_probs=58.6
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch------hchhhcc-ccCC
Q 007904 322 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH------FKKPWAH-EHEP 393 (585)
Q Consensus 322 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~------~k~~fa~-~~~~ 393 (585)
.|...+|+|.|| |--|..+++.|++. | .+++++|+..--.......+.. ....+.. +...
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~-----g-------~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 69 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLA-----G-------YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRD 69 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHC-----C-------CEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCC
Confidence 456779999997 77887777777652 5 3588887642100000000000 0011111 1112
Q ss_pred CCCHHHHhcccCCcEEEeccCCCCC----------------CCHHHHHHHHcCCCCcEEEecC
Q 007904 394 VNNLLDAVKVIKPTILIGSSGVGRT----------------FTKEVIEAMASFNEKPLILALS 440 (585)
Q Consensus 394 ~~~L~e~v~~vkptvLIG~S~~~g~----------------Ft~evi~~Ma~~~erPIIFaLS 440 (585)
..++.++++..++|++|=+.+.... -+..+++.|.+.+-+.+||.=|
T Consensus 70 ~~~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 132 (352)
T PLN02240 70 KEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSS 132 (352)
T ss_pred HHHHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 2356677776789999977764321 1235667776665567887543
No 354
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=50.07 E-value=16 Score=38.92 Aligned_cols=35 Identities=17% Similarity=0.331 Sum_probs=26.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
.+|||+|+|.||+..|+.|.+. + ..-+|.++++..
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~-----~-----~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ-----D-----AHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh-----C-----cCCCEEEEeCCC
Confidence 4899999999999999988552 2 124688887654
No 355
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=50.00 E-value=99 Score=31.75 Aligned_cols=88 Identities=20% Similarity=0.245 Sum_probs=53.6
Q ss_pred ceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhccc
Q 007904 326 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 404 (585)
Q Consensus 326 ~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~v 404 (585)
.||.++|+ |..|-.+++.+.+. .++ +=..++|++. .+.... ..+ ......++.++++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~----~~~------elvav~d~~~----~~~~~~----~~~--~i~~~~dl~~ll~-- 59 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA----EDL------ELVAAVDRPG----SPLVGQ----GAL--GVAITDDLEAVLA-- 59 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC----CCC------EEEEEEecCC----cccccc----CCC--CccccCCHHHhcc--
Confidence 48999999 99998888776542 233 3455677752 111101 111 1112367888886
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEe
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 438 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFa 438 (585)
++|++|=+|.+. ...++++...++ ..|+|..
T Consensus 60 ~~DvVid~t~p~--~~~~~~~~al~~-G~~vvig 90 (257)
T PRK00048 60 DADVLIDFTTPE--ATLENLEFALEH-GKPLVIG 90 (257)
T ss_pred CCCEEEECCCHH--HHHHHHHHHHHc-CCCEEEE
Confidence 599999888643 346666665554 5777755
No 356
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=49.94 E-value=28 Score=30.32 Aligned_cols=90 Identities=11% Similarity=0.162 Sum_probs=52.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 406 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkp 406 (585)
||.|+|+|..|.....-+... ..+. +=..++|++. +......+.|-- +...++.|.++.-++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~---~~~~------~v~~v~d~~~-------~~~~~~~~~~~~--~~~~~~~~ll~~~~~ 63 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRS---SPDF------EVVAVCDPDP-------ERAEAFAEKYGI--PVYTDLEELLADEDV 63 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHT---TTTE------EEEEEECSSH-------HHHHHHHHHTTS--EEESSHHHHHHHTTE
T ss_pred EEEEECCcHHHHHHHHHHHhc---CCCc------EEEEEEeCCH-------HHHHHHHHHhcc--cchhHHHHHHHhhcC
Confidence 899999999976665444432 0121 2345666631 112222222211 245789999998889
Q ss_pred cEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 007904 407 TILIGSSGVGRTFTKEVIEAMASFNEKPLIL 437 (585)
Q Consensus 407 tvLIG~S~~~g~Ft~evi~~Ma~~~erPIIF 437 (585)
|+++ +++.. ....++++...+... +|+.
T Consensus 64 D~V~-I~tp~-~~h~~~~~~~l~~g~-~v~~ 91 (120)
T PF01408_consen 64 DAVI-IATPP-SSHAEIAKKALEAGK-HVLV 91 (120)
T ss_dssp SEEE-EESSG-GGHHHHHHHHHHTTS-EEEE
T ss_pred CEEE-EecCC-cchHHHHHHHHHcCC-EEEE
Confidence 9888 55544 456677666655443 5554
No 357
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=49.89 E-value=20 Score=36.86 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=27.4
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
.+..|+|+|||.||+..|-.+.+ .|+ ++.++|++-
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~-----~G~-------~V~liEk~~ 58 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAK-----AGL-------KVAVFERKL 58 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 35689999999999999887754 364 588888764
No 358
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=49.75 E-value=52 Score=35.18 Aligned_cols=97 Identities=18% Similarity=0.088 Sum_probs=57.2
Q ss_pred ccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchh--chhhcc-ccCCCCCHHH
Q 007904 324 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF--KKPWAH-EHEPVNNLLD 399 (585)
Q Consensus 324 ~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~--k~~fa~-~~~~~~~L~e 399 (585)
+++||+|.|+ |-.|..+++.|.+ .| .+++.+|+..-- .+... ...+-. +......+.+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~-----~G-------~~V~~v~r~~~~------~~~~~~~~~~~~~~Dl~d~~~~~~ 81 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKA-----EG-------HYIIASDWKKNE------HMSEDMFCHEFHLVDLRVMENCLK 81 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHh-----CC-------CEEEEEEecccc------ccccccccceEEECCCCCHHHHHH
Confidence 4589999998 9988888888865 25 368888874310 01110 111211 1111223445
Q ss_pred HhcccCCcEEEeccCCCC--C---------------CCHHHHHHHHcCCCCcEEEecC
Q 007904 400 AVKVIKPTILIGSSGVGR--T---------------FTKEVIEAMASFNEKPLILALS 440 (585)
Q Consensus 400 ~v~~vkptvLIG~S~~~g--~---------------Ft~evi~~Ma~~~erPIIFaLS 440 (585)
+++ ++|++|=+.+..+ . .|..+++.+.++.-+.+||.=|
T Consensus 82 ~~~--~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 82 VTK--GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred HHh--CCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 554 5899998775431 0 2356777777766678998654
No 359
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.64 E-value=78 Score=34.49 Aligned_cols=108 Identities=24% Similarity=0.314 Sum_probs=58.0
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhccc
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 404 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~v 404 (585)
.++|+|+|.|-.|..+|+.|.+ .|. +++.+|.+- . .+.. ..+..+. ......+..+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~-----~G~-------~V~g~D~~~----~---~~~~--~~~~~~~-~~~~~~~~~~-- 58 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQ-----KGV-------YVIGVDKSL----E---ALQS--CPYIHER-YLENAEEFPE-- 58 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHH-----CCC-------EEEEEeCCc----c---ccch--hHHHhhh-hcCCcHHHhc--
Confidence 4689999999999988877764 363 588888641 1 1111 1111110 0111222233
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccCcEEEecCC
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGS 467 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Grai~AsGS 467 (585)
++|++|-..+.+ .-.+.+-++..+. -||| |++. . +-.+..+.+.+.|-.|||
T Consensus 59 ~~dlvV~s~gi~-~~~~~l~~A~~~g--~~vv---~~~~----~-~~~~~~~~~~~~I~ITGT 110 (418)
T PRK00683 59 QVDLVVRSPGIK-KEHPWVQAAIASH--IPVV---TDIQ----L-AFQTPEFTRYPSLGITGS 110 (418)
T ss_pred CCCEEEECCCCC-CCcHHHHHHHHCC--CcEE---EHHH----H-HHhhhhcCCCCEEEEECC
Confidence 378899877766 4466666666543 3433 3321 1 111112224567778887
No 360
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=49.58 E-value=41 Score=39.38 Aligned_cols=93 Identities=14% Similarity=0.219 Sum_probs=51.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 405 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vk 405 (585)
.||.|+|+|..|..+|..+... |. ..+++.+|++ ..+ +...+ .+........++.++++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-----G~-----~~~V~~~d~~----~~~---~~~a~-~~g~~~~~~~~~~~~~~~-- 63 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-----GL-----AREVVAVDRR----AKS---LELAV-SLGVIDRGEEDLAEAVSG-- 63 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CC-----CCEEEEEECC----hhH---HHHHH-HCCCCCcccCCHHHHhcC--
Confidence 6899999999999999988753 54 2458888874 111 11110 010000112346666654
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecC
Q 007904 406 PTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALS 440 (585)
Q Consensus 406 ptvLIG~S~~~g~Ft~evi~~Ma~~~-erPIIFaLS 440 (585)
+|++| ++.++ ...+++++.|+.+. +.-||.-++
T Consensus 64 aDvVi-lavp~-~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 64 ADVIV-LAVPV-LAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred CCEEE-ECCCH-HHHHHHHHHHHHhcCCCcEEEEcC
Confidence 66666 44333 24567777776542 233444343
No 361
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=49.48 E-value=22 Score=43.46 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=31.9
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC----CcccC
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK----GLIVS 374 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~----GLi~~ 374 (585)
-.+.||+|+|+|.||+..|..|... |. ++.++|+. |++.-
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~-----G~-------~VtVfE~~~~~GG~l~y 347 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVE-----GF-------PVTVFEAFHDLGGVLRY 347 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeeCCCCCceEEc
Confidence 4579999999999999999998763 64 58888875 66543
No 362
>PF04320 DUF469: Protein with unknown function (DUF469); InterPro: IPR007416 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.
Probab=49.47 E-value=14 Score=33.62 Aligned_cols=32 Identities=19% Similarity=0.489 Sum_probs=25.3
Q ss_pred CChhhhHHHHHHHHHHHHH---hcCCceeeeeecC
Q 007904 247 ATGQEYAELLDEFMSAVKQ---NYGEKVLIQFEDF 278 (585)
Q Consensus 247 ~~g~~y~~~idefv~av~~---~fGp~~lIq~EDf 278 (585)
++.++||.|+|+|+..|.+ .||.....+||-|
T Consensus 27 ~~~e~~D~~~D~fId~Ie~~gL~~~Ggg~~~~eG~ 61 (101)
T PF04320_consen 27 TSEEQIDAFVDAFIDVIEPNGLAFGGGGYEQWEGF 61 (101)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEecCCccCEeEE
Confidence 5678999999999998888 5666656666655
No 363
>PRK13937 phosphoheptose isomerase; Provisional
Probab=49.36 E-value=65 Score=31.43 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=23.9
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEecCCCC
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPT 443 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma--~~~erPIIFaLSNPt 443 (585)
+-|++|++|..|. |+++++.+. +...-|+|-=-+||.
T Consensus 106 ~~Dl~i~iS~sG~--t~~~~~~~~~ak~~g~~~I~iT~~~~ 144 (188)
T PRK13937 106 PGDVLIGISTSGN--SPNVLAALEKARELGMKTIGLTGRDG 144 (188)
T ss_pred CCCEEEEEeCCCC--cHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4699999999775 999988774 333344444333333
No 364
>PRK06753 hypothetical protein; Provisional
Probab=49.13 E-value=21 Score=37.45 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=17.6
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 007904 327 RFLFLGAGEAGTGIAELIAL 346 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~ 346 (585)
+|+|+|||.||+..|..|.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~ 21 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE 21 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 79999999999999888865
No 365
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=49.10 E-value=21 Score=35.34 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=25.3
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCc
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 371 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 371 (585)
.|+|+|||.||+..|-.|.+ .|+ ++.++|++..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~-----~g~-------~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD-----KGL-------RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccCC
Confidence 48999999999999877754 364 5778887643
No 366
>PRK07045 putative monooxygenase; Reviewed
Probab=48.99 E-value=21 Score=37.78 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.5
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 007904 326 HRFLFLGAGEAGTGIAELIAL 346 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~ 346 (585)
-+|+|+|||.||+..|-.|.+
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~ 26 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGA 26 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHh
Confidence 479999999999999988765
No 367
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=48.47 E-value=30 Score=40.09 Aligned_cols=75 Identities=17% Similarity=0.202 Sum_probs=51.3
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc-----------
Q 007904 322 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH----------- 389 (585)
Q Consensus 322 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~----------- 389 (585)
-+++++|+|-|| ||.|-.+++++++. + .++|.++|++=. ++..-.+++..
T Consensus 247 ~~~gK~vLVTGagGSiGsel~~qil~~-----~------p~~i~l~~~~E~-------~~~~i~~el~~~~~~~~~~~~i 308 (588)
T COG1086 247 MLTGKTVLVTGGGGSIGSELCRQILKF-----N------PKEIILFSRDEY-------KLYLIDMELREKFPELKLRFYI 308 (588)
T ss_pred HcCCCEEEEeCCCCcHHHHHHHHHHhc-----C------CCEEEEecCchH-------HHHHHHHHHHhhCCCcceEEEe
Confidence 378899999998 68898888888764 3 488999988511 12222222322
Q ss_pred -ccCCCCCHHHHhcccCCcEEEeccC
Q 007904 390 -EHEPVNNLLDAVKVIKPTILIGSSG 414 (585)
Q Consensus 390 -~~~~~~~L~e~v~~vkptvLIG~S~ 414 (585)
+-.+...+.++++..|||+++=+.+
T Consensus 309 gdVrD~~~~~~~~~~~kvd~VfHAAA 334 (588)
T COG1086 309 GDVRDRDRVERAMEGHKVDIVFHAAA 334 (588)
T ss_pred cccccHHHHHHHHhcCCCceEEEhhh
Confidence 1122246899999999999997665
No 368
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=48.34 E-value=22 Score=38.85 Aligned_cols=31 Identities=26% Similarity=0.616 Sum_probs=25.1
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.++|+|||.||+.+|..|.+ .| .++.++|+.
T Consensus 3 DvvIIGaG~aGlsaA~~La~-----~G-------~~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQ-----LN-------KRVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEecC
Confidence 58999999999999988864 25 468888874
No 369
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=48.23 E-value=34 Score=35.76 Aligned_cols=145 Identities=18% Similarity=0.278 Sum_probs=84.3
Q ss_pred hCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCC-CCH
Q 007904 319 IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNL 397 (585)
Q Consensus 319 ~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~-~~L 397 (585)
-|..++ +++|+||=--|.+||+.|... + +|+++|-+ +|-+.+..+.-.. ..+
T Consensus 38 e~~~~k--~~lI~G~YltG~~iA~~L~~~-----------~--eV~lvDI~------------p~lk~ll~~~i~F~~~~ 90 (252)
T PF06690_consen 38 EGEEFK--QALIFGAYLTGNFIASALSKK-----------C--EVTLVDIH------------PHLKELLNENIKFMEFR 90 (252)
T ss_pred cccccc--eEEEEEEEeehHHHHHHhccC-----------c--eEEEEeCc------------HHHHHHhcCCCceeecc
Confidence 345555 999999999999999888542 2 79999874 2333332110000 111
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccCcEEEecCCCCCcceeCCe
Q 007904 398 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGK 477 (585)
Q Consensus 398 ~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Grai~AsGSPf~pv~~~G~ 477 (585)
.+ + .++||++|=++|-||+ +++.++.. .|=+|=.=||. ++-+-...++..+ .
T Consensus 91 ~~-~-~~~~DlIID~TGlGGv-~~~~Ls~~-----~p~v~IVEdP~--~~~sD~~I~~~~n------------------t 142 (252)
T PF06690_consen 91 NG-L-EGNPDLIIDTTGLGGV-DPDFLSKF-----NPKVFIVEDPK--GDGSDKTIYEINN------------------T 142 (252)
T ss_pred CC-C-CCCCCEEEECCCCCCC-CHHHHhcc-----CCCEEEEECCC--ccCcchhhhhccc------------------H
Confidence 11 1 2379999999999996 99999865 26677778888 4443333333211 1
Q ss_pred eeCcC--CCcccccchhh--hHHHHHhCCcccCHHHHHHHHHHHH
Q 007904 478 VFVPG--QANNAYIFPGF--GLGLVISGAIRVHDDMLLAASEALA 518 (585)
Q Consensus 478 ~~~p~--Q~NN~yiFPGi--glG~l~~~a~~Itd~m~~aAA~aLA 518 (585)
.-.+. -+.+..+.=-- |+.+=.||--.+|=+.+..|+..+=
T Consensus 143 ~erl~~~~~~~kg~LkT~r~~~~sKTSGTMTLTIdt~r~s~~~i~ 187 (252)
T PF06690_consen 143 EERLNAINGEKKGILKTYRSGLVSKTSGTMTLTIDTLRDSMNEIE 187 (252)
T ss_pred HHHHhhhcccceeEEEEeeccccccccceEEEEHHHHHHHHHHHH
Confidence 11111 11122222223 4455566766777777766665543
No 370
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=48.22 E-value=1.1e+02 Score=28.76 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=25.0
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEecCCCC
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPT 443 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma--~~~erPIIFaLSNPt 443 (585)
+-|++|++|..| -|+++++.+. +...-|||-=-+||.
T Consensus 79 ~~D~~i~iS~sG--~t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 79 KGDVLLGISTSG--NSKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCEEEEEcCCC--CCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 469999999977 4899888763 444455555444444
No 371
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=48.11 E-value=1.6e+02 Score=31.87 Aligned_cols=138 Identities=13% Similarity=0.176 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhcCCceeeeeecCCCchHHHHHHHHcCCCeeec-cCCCchHHHHHHHHHHHHHHhC-CCcccceEEEeCc
Q 007904 256 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN-DDIQGTASVVLAGVVAALKLIG-GTLAEHRFLFLGA 333 (585)
Q Consensus 256 idefv~av~~~fGp~~lIq~EDf~~~~af~lL~ryr~~~~~Fn-DDiQGTaaV~lAgll~A~r~~g-~~l~d~riv~~GA 333 (585)
+...+..+ .+| .++++ +-.+. ..+.+.+.+| ..+|++| .|-..--+=+||=++.-.+..| +++++.+|.++|-
T Consensus 90 l~Dtarvl-s~y-~D~Iv-~R~~~-~~~~~~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD 164 (336)
T PRK03515 90 IKDTARVL-GRM-YDGIQ-YRGYG-QEIVETLAEY-AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGD 164 (336)
T ss_pred HHHHHHHH-HHh-CcEEE-EEeCC-hHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCC
Confidence 34444443 446 44443 33332 2233334444 4799999 3334455667888888777776 4799999999998
Q ss_pred chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccC----CCCCHHHHhcccCCcEE
Q 007904 334 GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE----PVNNLLDAVKVIKPTIL 409 (585)
Q Consensus 334 GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~----~~~~L~e~v~~vkptvL 409 (585)
+.- ++++-++.++.+ .|+ ++.++-.+|+.-.. + +-..-+.+++... -..++.|++++ +||+
T Consensus 165 ~~~--~v~~Sl~~~~~~-~g~-------~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~i~~~~d~~ea~~~--aDvv 229 (336)
T PRK03515 165 ARN--NMGNSLLEAAAL-TGL-------DLRLVAPKACWPEA--A-LVTECRALAQKNGGNITLTEDIAEGVKG--ADFI 229 (336)
T ss_pred CcC--cHHHHHHHHHHH-cCC-------EEEEECCchhcCcH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEE
Confidence 633 477777776655 475 68888888773321 1 1111123333211 13689999997 9999
Q ss_pred Eecc
Q 007904 410 IGSS 413 (585)
Q Consensus 410 IG~S 413 (585)
.-.+
T Consensus 230 ytd~ 233 (336)
T PRK03515 230 YTDV 233 (336)
T ss_pred EecC
Confidence 9764
No 372
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=47.66 E-value=29 Score=36.55 Aligned_cols=117 Identities=15% Similarity=0.230 Sum_probs=63.4
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 405 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vk 405 (585)
+||.++|.|+.|--|++.|... +. +..+-.++.|+.. + ..+.++...+...+|.|.+. -+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~-----~~---~~~~l~~V~~~~~----~-------~~~~~~~~~~~~~~l~~ll~-~~ 62 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLAD-----AA---QPCQLAALTRNAA----D-------LPPALAGRVALLDGLPGLLA-WR 62 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcC-----CC---CceEEEEEecCCH----H-------HHHHhhccCcccCCHHHHhh-cC
Confidence 6999999999999999887542 11 0123345555531 1 11223333334578888643 36
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE---ecCCCCCcCCCCHHHHhccccCcEEEecC
Q 007904 406 PTILIGSSGVGRTFTKEVIEAMASFNEKPLIL---ALSNPTSQSECTAEEAYTWSKGRAIFASG 466 (585)
Q Consensus 406 ptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIF---aLSNPt~~~E~tpeda~~wt~Grai~AsG 466 (585)
||+++=+.++. ++.+-..+.+.+.. .=+|+ ||+++. =+-.-.++-+-..++..+.||
T Consensus 63 ~DlVVE~A~~~-av~e~~~~iL~~g~-dlvv~SvGALaD~~--~~~~l~~~A~~~g~~i~ipSG 122 (267)
T PRK13301 63 PDLVVEAAGQQ-AIAEHAEGCLTAGL-DMIICSAGALADDA--LRARLIAAAEAGGARIRVPAG 122 (267)
T ss_pred CCEEEECCCHH-HHHHHHHHHHhcCC-CEEEEChhHhcCHH--HHHHHHHHHHhCCCEEEEeCh
Confidence 99999988854 44444444443222 22222 233333 122222333335667888877
No 373
>PLN02676 polyamine oxidase
Probab=47.49 E-value=49 Score=37.17 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=26.6
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
...+|+|+|||.+|+..|..|.+. |. +++.+++++.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~-----g~------~~v~vlE~~~ 60 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEA-----GI------EDILILEATD 60 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHc-----CC------CcEEEecCCC
Confidence 356799999999999999988763 64 2455555543
No 374
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=47.38 E-value=22 Score=39.99 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=26.8
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
-.|||+|+|.+|+++|..+... |+ ++.++|+..
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~r-----Gl-------~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGR-----GL-------SVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecCC
Confidence 4699999999999999888653 75 488888763
No 375
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=47.35 E-value=21 Score=37.52 Aligned_cols=32 Identities=19% Similarity=0.427 Sum_probs=25.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
-.|+|+|||.||+..|-.|.+ .|+ ++.++|++
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 37 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ-----SGL-------RVALLAPR 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 469999999999999977764 364 57777765
No 376
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=47.28 E-value=22 Score=38.91 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=26.9
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
-.++|+|||+||+..|..+.+. | .++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~-----G-------~~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQL-----G-------LKVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEeccc
Confidence 3699999999999999887653 6 4788999864
No 377
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=47.22 E-value=26 Score=36.91 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=26.3
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.-+|+|+|||.||...|-+|.+.- + .|+ ++.++|++
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~-~-~G~-------~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLS-H-GGL-------PVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcc-c-CCC-------EEEEEeCC
Confidence 457999999999999988886520 0 164 57778874
No 378
>PRK06138 short chain dehydrogenase; Provisional
Probab=47.21 E-value=43 Score=32.56 Aligned_cols=36 Identities=25% Similarity=0.392 Sum_probs=22.6
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 322 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 322 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.|++.+++|.|| |.-|..+|+.++ + .| .++++++++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~----~-~G-------~~v~~~~r~ 38 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFA----R-EG-------ARVVVADRD 38 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHH----H-CC-------CeEEEecCC
Confidence 366789999998 344444444443 3 25 358887764
No 379
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=47.14 E-value=22 Score=39.49 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=18.3
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 007904 326 HRFLFLGAGEAGTGIAELIAL 346 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~ 346 (585)
-.|+|+|||.||...|..+.+
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~ 60 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAK 60 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 369999999999999988765
No 380
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=46.98 E-value=16 Score=32.15 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=27.0
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
+|++.+++|+|+|..|.-=+++|+++ | .++.++...-
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~-----g-------A~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEA-----G-------AKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCC-----T-------BEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-----C-------CEEEEECCch
Confidence 57899999999999998887777653 4 4688877753
No 381
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=46.72 E-value=36 Score=36.41 Aligned_cols=97 Identities=19% Similarity=0.190 Sum_probs=49.7
Q ss_pred cCCCchHHHHHHHHHHH-HHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCc
Q 007904 299 DDIQGTASVVLAGVVAA-LKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK 377 (585)
Q Consensus 299 DDiQGTaaV~lAgll~A-~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~ 377 (585)
|+..+.-+=-+|.-+.+ ....+.+..+ +++|+|+|+.|+..+.+... .|. ++|+++|.. +.|
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~~-~V~V~GaGpIGLla~~~a~~-----~Ga------~~Viv~d~~----~~R- 205 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPGG-TVVVVGAGPIGLLAIALAKL-----LGA------SVVIVVDRS----PER- 205 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCCC-EEEEECCCHHHHHHHHHHHH-----cCC------ceEEEeCCC----HHH-
Confidence 33444333344444444 2222233333 99999999999776333322 364 789988773 222
Q ss_pred cCCchhchhhccc--cCCCC-CHHHHh----cccCCcEEEeccC
Q 007904 378 DSLQHFKKPWAHE--HEPVN-NLLDAV----KVIKPTILIGSSG 414 (585)
Q Consensus 378 ~~l~~~k~~fa~~--~~~~~-~L~e~v----~~vkptvLIG~S~ 414 (585)
|...++.++-+ ..... ...+.+ ..-..|+.|=+|+
T Consensus 206 --l~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G 247 (350)
T COG1063 206 --LELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG 247 (350)
T ss_pred --HHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence 33333323221 11111 222223 2236899999998
No 382
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=46.43 E-value=81 Score=31.69 Aligned_cols=97 Identities=16% Similarity=0.200 Sum_probs=51.1
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhc----hhhcc-ccCCCCCHHHH
Q 007904 327 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK----KPWAH-EHEPVNNLLDA 400 (585)
Q Consensus 327 riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k----~~fa~-~~~~~~~L~e~ 400 (585)
||+|.|| |..|..+++.|.+ .| .+++++|+. .......+.... ..+.. +.....++.++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~-----~g-------~~V~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 65 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLE-----SG-------HEVVVLDNL---SNGSPEALKRGERITRVTFVEGDLRDRELLDRL 65 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHh-----CC-------CeEEEEeCC---CccchhhhhhhccccceEEEECCCCCHHHHHHH
Confidence 5778876 7777777776654 25 346667642 111001111110 01111 21222457777
Q ss_pred hcccCCcEEEeccCCCCCC----------------CHHHHHHHHcCCCCcEEEe
Q 007904 401 VKVIKPTILIGSSGVGRTF----------------TKEVIEAMASFNEKPLILA 438 (585)
Q Consensus 401 v~~vkptvLIG~S~~~g~F----------------t~evi~~Ma~~~erPIIFa 438 (585)
++..++|++|=+.+..... +..+++.|.+..-+.+||.
T Consensus 66 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ 119 (328)
T TIGR01179 66 FEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFS 119 (328)
T ss_pred HHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEe
Confidence 7767899999665532111 2456677776655678773
No 383
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=46.06 E-value=30 Score=35.77 Aligned_cols=35 Identities=29% Similarity=0.344 Sum_probs=25.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
.+--++|+|||+||+..|..|.+. |+ ++.+++++=
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~-----g~-------kV~v~E~~~ 50 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA-----GL-------KVAVIERKL 50 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH-----TS--------EEEEESSS
T ss_pred ccCCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEecCC
Confidence 356799999999999999888764 64 688888763
No 384
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=45.99 E-value=45 Score=35.27 Aligned_cols=38 Identities=29% Similarity=0.338 Sum_probs=28.7
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcC--CCCcEEEecCCCCC
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMASF--NEKPLILALSNPTS 444 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma~~--~erPIIFaLSNPt~ 444 (585)
+-|++||+|..|. |++++..+... ..-|+|.=-+||.+
T Consensus 126 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~tIaIT~~~~s 165 (291)
T TIGR00274 126 KNDVVVGIAASGR--TPYVIAGLQYARSLGALTISIACNPKS 165 (291)
T ss_pred CCCEEEEEeCCCC--cHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 5699999999776 99999888533 33477776677773
No 385
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=45.77 E-value=32 Score=38.05 Aligned_cols=56 Identities=21% Similarity=0.294 Sum_probs=36.7
Q ss_pred HHHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEc
Q 007904 288 AKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVD 367 (585)
Q Consensus 288 ~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD 367 (585)
++|-.....+.|=..||+ .++++++++|.||.+ ||...++..+.+ .|. ++.++|
T Consensus 156 ~~~~~~~~~~~d~~~~ta---------------~sl~gK~VLITGASg---GIG~aLA~~La~-~G~-------~Vi~l~ 209 (406)
T PRK07424 156 NAYYCGTFTLVDKLMGTA---------------LSLKGKTVAVTGASG---TLGQALLKELHQ-QGA-------KVVALT 209 (406)
T ss_pred cceeeeeEEEeehhcCcc---------------cCCCCCEEEEeCCCC---HHHHHHHHHHHH-CCC-------EEEEEe
Confidence 356677889999888888 246778999999832 333444444433 363 577777
Q ss_pred CC
Q 007904 368 SK 369 (585)
Q Consensus 368 ~~ 369 (585)
++
T Consensus 210 r~ 211 (406)
T PRK07424 210 SN 211 (406)
T ss_pred CC
Confidence 64
No 386
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=45.76 E-value=12 Score=44.87 Aligned_cols=116 Identities=22% Similarity=0.349 Sum_probs=68.2
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc--CC--CCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EP--VNN 396 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~--~~--~~~ 396 (585)
++|.++++.++|||+.|+-.-+-+.. .|+.--+- ..|.+.|-+ +|.++ +|+. |--| |+. .. ...
T Consensus 426 eKL~~~~~FlVGaGAIGCE~LKN~am-----~Gvg~g~~-g~ItVTDmD-~IEkS---NLnR-QFLF-R~~dVgk~KSe~ 493 (1013)
T KOG2012|consen 426 EKLADQKVFLVGAGAIGCELLKNFAL-----MGVGCGNS-GKITVTDMD-HIEKS---NLNR-QFLF-RPWDVGKPKSEV 493 (1013)
T ss_pred HHHhhCcEEEEccchhhHHHHHhhhh-----eeeccCCC-CceEEeccc-hhhhc---cccc-eeec-cccccCchHHHH
Confidence 67899999999999999876665543 26632221 246665554 23332 2442 2222 321 11 124
Q ss_pred HHHHhcccCCcEEE-------eccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHHHhccccCcEEE
Q 007904 397 LLDAVKVIKPTILI-------GSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIF 463 (585)
Q Consensus 397 L~e~v~~vkptvLI-------G~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tpeda~~wt~Grai~ 463 (585)
-.+|+...+|++.| |--+ -++|+.+--+..- =++=||=|= ||-.|-|+||+|
T Consensus 494 AA~A~~~mNp~l~I~a~~~rvgpeT-E~If~D~Ff~~ld-----~VanALDNV---------dAR~YvD~RCv~ 552 (1013)
T KOG2012|consen 494 AAAAARGMNPDLNIIALQNRVGPET-EHIFNDEFFENLD-----GVANALDNV---------DARRYVDRRCVY 552 (1013)
T ss_pred HHHHHHhcCCCceeeehhhccCccc-ccccchhHHhhhH-----HHHHhhcch---------hhhhhhhhhhhh
Confidence 67889999999987 3333 2477777666542 122234442 466677888877
No 387
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=45.72 E-value=76 Score=32.67 Aligned_cols=86 Identities=12% Similarity=0.249 Sum_probs=51.0
Q ss_pred eEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 007904 327 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 405 (585)
Q Consensus 327 riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vk 405 (585)
||+|.|| |-.|--+++.|.+ .| +++.+|+..-. +.-+-.....+.++++..+
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~-----~g--------~V~~~~~~~~~--------------~~~Dl~d~~~~~~~~~~~~ 54 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAP-----LG--------NLIALDVHSTD--------------YCGDFSNPEGVAETVRKIR 54 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhc-----cC--------CEEEecccccc--------------ccCCCCCHHHHHHHHHhcC
Confidence 7999997 9999887776653 13 35666653110 1011112234777888888
Q ss_pred CcEEEeccCCCCCC----------------CHHHHHHHHcCCCCcEEEecC
Q 007904 406 PTILIGSSGVGRTF----------------TKEVIEAMASFNEKPLILALS 440 (585)
Q Consensus 406 ptvLIG~S~~~g~F----------------t~evi~~Ma~~~erPIIFaLS 440 (585)
||++|=+.+..+.- |..+++.+.++. .++||.=|
T Consensus 55 ~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g-~~~v~~Ss 104 (299)
T PRK09987 55 PDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVG-AWVVHYST 104 (299)
T ss_pred CCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC-CeEEEEcc
Confidence 99999776544221 334555555544 56887544
No 388
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=45.68 E-value=17 Score=39.58 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=26.3
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
..+..||||+|+|.||+..|+.|. + . .-+|.++|.+
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~----~-~-------~~~ItlI~~~ 42 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLD----P-K-------KYNITVISPR 42 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhC----c-C-------CCeEEEEcCC
Confidence 345679999999999998876652 1 1 2358999875
No 389
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=45.68 E-value=21 Score=37.44 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=17.8
Q ss_pred EEEeCcchHHHHHHHHHHHH
Q 007904 328 FLFLGAGEAGTGIAELIALE 347 (585)
Q Consensus 328 iv~~GAGsAg~GIA~ll~~~ 347 (585)
|+|+|||.||+..|..|.+.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~ 21 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRL 21 (382)
T ss_pred EEEECccHHHHHHHHHHhcC
Confidence 79999999999999988763
No 390
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=45.59 E-value=1.7e+02 Score=29.35 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=28.5
Q ss_pred CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 007904 396 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 437 (585)
Q Consensus 396 ~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIF 437 (585)
.+.+.++. .|++|..|... .|.-.++++|+ +..|+|.
T Consensus 255 ~~~~~~~~--ad~~v~~s~~e-~~~~~~~Ea~a--~G~PvI~ 291 (360)
T cd04951 255 DIAAYYNA--ADLFVLSSAWE-GFGLVVAEAMA--CELPVVA 291 (360)
T ss_pred cHHHHHHh--hceEEeccccc-CCChHHHHHHH--cCCCEEE
Confidence 46667766 88999888754 47888999998 5778885
No 391
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=45.58 E-value=26 Score=38.13 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=27.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
-.|||+|||+||+..|..+.+ .| .++.++|++.
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~-----~g-------~~V~liE~~~ 36 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLAS-----AG-------KKVALVEESK 36 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHh-----CC-------CEEEEEecCC
Confidence 469999999999999988865 26 4699999864
No 392
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=45.57 E-value=1.9e+02 Score=30.79 Aligned_cols=113 Identities=19% Similarity=0.283 Sum_probs=72.6
Q ss_pred HHHHHHHHcCCCeeecc-CCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcC
Q 007904 283 AFELLAKYGTTHLVFND-DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 361 (585)
Q Consensus 283 af~lL~ryr~~~~~FnD-DiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~ 361 (585)
+.+.+.+| .++|++|= |-..--.=+|+=++.-.+..|. +++.||+++|-.. -+++-++.++.+ .|+
T Consensus 107 ~~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~-l~g~~v~~vGd~~---~v~~Sl~~~l~~-~g~------- 173 (304)
T TIGR00658 107 DVEELAKY-ASVPVINGLTDLFHPCQALADLLTIIEHFGK-LKGVKVVYVGDGN---NVCNSLMLAGAK-LGM------- 173 (304)
T ss_pred HHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCC-CCCcEEEEEeCCC---chHHHHHHHHHH-cCC-------
Confidence 34444444 47899994 3333445677777777666664 9999999999863 478888777766 464
Q ss_pred eEEEEcCCCcccCCCccCCchhchhhcccc----CCCCCHHHHhcccCCcEEEecc
Q 007904 362 KICLVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLLDAVKVIKPTILIGSS 413 (585)
Q Consensus 362 ~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~----~~~~~L~e~v~~vkptvLIG~S 413 (585)
++.++-.+++.-+. .+...-+.+++.. ....++.|+++. .||+.-.+
T Consensus 174 ~v~~~~P~~~~~~~---~~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvvy~~~ 224 (304)
T TIGR00658 174 DVVVATPEGYEPDA---DIVKKAQEIAKENGGSVELTHDPVEAVKG--ADVIYTDV 224 (304)
T ss_pred EEEEECCchhcCCH---HHHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEEcC
Confidence 68888887773321 1111122333321 123689999997 99998754
No 393
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=45.57 E-value=33 Score=38.72 Aligned_cols=104 Identities=16% Similarity=0.286 Sum_probs=63.7
Q ss_pred CCCcccccchhhHHHHHHhcCCCCCceeeEEe-ccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCCce
Q 007904 193 LGCQGMGIPVGKLALYTALGGIRPSACLPITV-DVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKV 271 (585)
Q Consensus 193 lG~~GmgI~iGKl~LY~a~gGI~P~~~lPV~L-DvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~ 271 (585)
.|+-| -||.++-.|.|+-=--...-+.| .|+.| +|.=+-+...= ++.
T Consensus 241 YGPPG----TGKSS~IaAmAn~L~ydIydLeLt~v~~n---------------------------~dLr~LL~~t~-~kS 288 (457)
T KOG0743|consen 241 YGPPG----TGKSSFIAAMANYLNYDIYDLELTEVKLD---------------------------SDLRHLLLATP-NKS 288 (457)
T ss_pred eCCCC----CCHHHHHHHHHhhcCCceEEeeeccccCc---------------------------HHHHHHHHhCC-CCc
Confidence 45555 37999999999864222555556 56533 22222223333 788
Q ss_pred eeeeecCCCchHHHHHHHHcCCCeeeccCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCc
Q 007904 272 LIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGA 333 (585)
Q Consensus 272 lIq~EDf~~~~af~lL~ryr~~~~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GA 333 (585)
+|-.|||.. +|.+=++-.++-.-+++ .-.-|||.||||++--.-..=.+.||+||=.
T Consensus 289 IivIEDIDc--s~~l~~~~~~~~~~~~~---~~~~VTlSGLLNfiDGlwSscg~ERIivFTT 345 (457)
T KOG0743|consen 289 ILLIEDIDC--SFDLRERRKKKKENFEG---DLSRVTLSGLLNFLDGLWSSCGDERIIVFTT 345 (457)
T ss_pred EEEEeeccc--ccccccccccccccccC---CcceeehHHhhhhhccccccCCCceEEEEec
Confidence 999999964 35443333333333333 4667999999999765555556778888754
No 394
>PRK06841 short chain dehydrogenase; Provisional
Probab=45.52 E-value=39 Score=33.07 Aligned_cols=36 Identities=31% Similarity=0.455 Sum_probs=23.9
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 322 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 322 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
++++.+++|.|| |..|..+|+.+. + .|. +++++++.
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~----~-~G~-------~Vi~~~r~ 48 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFA----A-KGA-------RVALLDRS 48 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHH----H-CCC-------EEEEEeCC
Confidence 467889999998 555555555554 3 363 57778774
No 395
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=45.51 E-value=25 Score=40.19 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=0.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.||+|+|||.+|+..|+.|++. |+ .+.++++.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~-----g~-------~~~~fE~~ 33 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE-----GL-------EVTCFEKS 33 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT-----T--------EEEEEESS
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CC-------CCeEEecC
No 396
>PLN02463 lycopene beta cyclase
Probab=45.41 E-value=24 Score=39.32 Aligned_cols=32 Identities=22% Similarity=0.538 Sum_probs=25.3
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
-.|+|+|||.||..+|..+.+ .|+ ++.++|+.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~-----~Gl-------~V~liE~~ 60 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE-----AGL-------SVCCIDPS 60 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----CCC-------eEEEeccC
Confidence 479999999999999988754 365 57777774
No 397
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=45.24 E-value=26 Score=37.47 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=26.3
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
...|+|+|||.||+-.|-.|.+ .|+ ++.++|+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~-----~G~-------~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR-----AGL-------DVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEccC
Confidence 3579999999999998888765 375 57778876
No 398
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=45.21 E-value=28 Score=38.30 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=27.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
...+|+|+|+|.||+..|..+.. .| .++.++|+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~-----~g-------~~V~lie~~ 172 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLAR-----KG-------YDVTIFEAR 172 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEccC
Confidence 45799999999999998887754 25 368888875
No 399
>PRK09186 flagellin modification protein A; Provisional
Probab=45.05 E-value=50 Score=32.24 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=21.2
Q ss_pred cccceEEEeCcc-hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 323 LAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 323 l~d~riv~~GAG-sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+++.+++|.||+ ..|..+|+.+. + .|. ++++++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~----~-~g~-------~v~~~~r~ 37 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAIL----E-AGG-------IVIAADID 37 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHH----H-CCC-------EEEEEecC
Confidence 456889999984 34444555553 3 363 46777653
No 400
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=44.94 E-value=27 Score=36.45 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=27.3
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
...|+|+|||-+|+.+|-.|.+. | .++.++|+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-----g-------~~V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-----G-------LRVLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeccc
Confidence 34699999999999999877663 6 4688998764
No 401
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=44.87 E-value=73 Score=35.24 Aligned_cols=110 Identities=11% Similarity=0.052 Sum_probs=61.1
Q ss_pred cceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcC--eEEEE--cCCCcccCCCccCCchhchhhccccCCCCCHHH
Q 007904 325 EHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRK--KICLV--DSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 399 (585)
Q Consensus 325 d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~--~i~lv--D~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e 399 (585)
--||.|+|| |..|..+|-.|+.. |+-.+ -+ -+.|+ |.+-=..++-.-+|.+-.-++.....-..+-.+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~-----~l~~~--~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~ 116 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASG-----EVFGQ--DQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYE 116 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc-----cccCC--CCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHH
Confidence 379999999 99999999887652 55110 01 34455 432110111000122211122211000123346
Q ss_pred HhcccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCC-CCcEEEecCCCC
Q 007904 400 AVKVIKPTILIGSSGVG---RT-----------FTKEVIEAMASFN-EKPLILALSNPT 443 (585)
Q Consensus 400 ~v~~vkptvLIG~S~~~---g~-----------Ft~evi~~Ma~~~-erPIIFaLSNPt 443 (585)
.+++ .|++|=+.+.+ |- .=+++.+.+.++. +.-||+--|||.
T Consensus 117 ~~kd--aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPv 173 (387)
T TIGR01757 117 VFED--ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPC 173 (387)
T ss_pred HhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcH
Confidence 6776 89888665554 31 1246777788855 899999999998
No 402
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=44.84 E-value=59 Score=37.03 Aligned_cols=97 Identities=19% Similarity=0.150 Sum_probs=62.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc-ccC---CCCCHHHHhc
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHE---PVNNLLDAVK 402 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~-~~~---~~~~L~e~v~ 402 (585)
+|-|+|-|..|.++|.-|++. |. ++.++|+. .++ ..+....++. ... ...++.|+++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~V~NRt----~~k---~~~l~~~~~~~Ga~~~~~a~s~~e~v~ 68 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEK-----GF-------PISVYNRT----TSK---VDETVERAKKEGNLPLYGFKDPEDFVL 68 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhC-----CC-------eEEEECCC----HHH---HHHHHHhhhhcCCcccccCCCHHHHHh
Confidence 699999999999999999763 64 67778873 222 2222221221 111 3468999997
Q ss_pred cc-CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCC
Q 007904 403 VI-KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPT 443 (585)
Q Consensus 403 ~v-kptvLIG~S~~~g~Ft~evi~~Ma~~-~erPIIFaLSNPt 443 (585)
.+ +|+++| ++=..+.-.++|+..+... .+.-||.=+||=.
T Consensus 69 ~l~~~dvIi-~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~ 110 (493)
T PLN02350 69 SIQKPRSVI-ILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEW 110 (493)
T ss_pred cCCCCCEEE-EECCCcHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 64 588888 3333445566676554433 4677999999855
No 403
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=44.80 E-value=31 Score=40.68 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=28.9
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
-...+|+|+|||.||+..|..|... |. ++.++|+.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~-----G~-------~V~v~e~~ 463 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKR-----GY-------DVTVFEAL 463 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 4578999999999999999988753 63 68889874
No 404
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=44.69 E-value=1e+02 Score=30.29 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=24.6
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEecCCC
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNP 442 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma--~~~erPIIFaLSNP 442 (585)
+-|++|++|..|. |+++++.+. +...-|||-=-+|+
T Consensus 111 ~~Dv~I~iS~SG~--t~~~i~~~~~ak~~g~~iI~iT~~~ 148 (192)
T PRK00414 111 EGDVLLGISTSGN--SGNIIKAIEAARAKGMKVITLTGKD 148 (192)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4699999999774 999998774 33344555444443
No 405
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=44.64 E-value=2.1e+02 Score=27.19 Aligned_cols=82 Identities=23% Similarity=0.331 Sum_probs=49.6
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhccc
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 404 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~v 404 (585)
+..++++|...... ++.+.. .|. .++|++|...+-.. + -..|+ .-|.++++..
T Consensus 30 ~v~~v~~G~~~~~~--~~~~~~-----~Ga------d~v~~~~~~~~~~~------~--~~~~a------~al~~~i~~~ 82 (168)
T cd01715 30 EVTALVIGSGAEAV--AAALKA-----YGA------DKVLVAEDPALAHY------L--AEPYA------PALVALAKKE 82 (168)
T ss_pred CEEEEEECCChHHH--HHHHHh-----cCC------CEEEEecChhhccc------C--hHHHH------HHHHHHHHhc
Confidence 35788888876653 344333 375 67888765432110 0 01222 3478889988
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEE
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLI 436 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma~~~erPII 436 (585)
+|++++.-++. +..++--..|..-.-|++
T Consensus 83 ~p~~Vl~~~t~---~g~~la~rlAa~L~~~~v 111 (168)
T cd01715 83 KPSHILAGATS---FGKDLAPRVAAKLDVGLI 111 (168)
T ss_pred CCCEEEECCCc---cccchHHHHHHHhCCCce
Confidence 99988866653 455777777665566665
No 406
>PRK06392 homoserine dehydrogenase; Provisional
Probab=44.58 E-value=91 Score=33.57 Aligned_cols=82 Identities=15% Similarity=0.270 Sum_probs=48.7
Q ss_pred eEEEeCcchHHHHHHHHHHHHHH-hhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc----cCCCC--CHHH
Q 007904 327 RFLFLGAGEAGTGIAELIALEIS-KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVN--NLLD 399 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~-~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~----~~~~~--~L~e 399 (585)
||.++|.|..|-+++++|.+--. ++.|+. -+=+-+.|++|-+.+..+=++.... .+... ..... ++.+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~----l~VVaVsds~g~l~~~~Gldl~~l~-~~~~~g~l~~~~~~~~~~~~ 76 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNG----ISVVSVSDSKLSYYNERGLDIGKII-SYKEKGRLEEIDYEKIKFDE 76 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCC----eEEEEEEECCCcccCCcCCChHHHH-HHHhcCccccCCCCcCCHHH
Confidence 79999999999999999876200 112321 1235567999988876531122211 11110 01112 5666
Q ss_pred HhcccCCcEEEeccC
Q 007904 400 AVKVIKPTILIGSSG 414 (585)
Q Consensus 400 ~v~~vkptvLIG~S~ 414 (585)
.++ .+|||+|=+++
T Consensus 77 ll~-~~~DVvVE~t~ 90 (326)
T PRK06392 77 IFE-IKPDVIVDVTP 90 (326)
T ss_pred Hhc-CCCCEEEECCC
Confidence 665 58999998874
No 407
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=44.51 E-value=22 Score=37.69 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=26.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
...|+|+|||.+|+..|-.|.+ .|+ ++.++|++-
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~-----~G~-------~v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALAD-----AGL-------SVALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 3579999999999999977654 375 488888763
No 408
>PRK06182 short chain dehydrogenase; Validated
Probab=44.42 E-value=37 Score=33.90 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=38.1
Q ss_pred ccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhh-ccccCCCCCHHHHh
Q 007904 324 AEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNNLLDAV 401 (585)
Q Consensus 324 ~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~f-a~~~~~~~~L~e~v 401 (585)
+..+++|.|| |..|..+|+.+. + .| -++++++++- ++.+.+......+ .-|-....++.+++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~----~-~G-------~~V~~~~r~~----~~l~~~~~~~~~~~~~Dv~~~~~~~~~~ 65 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLA----A-QG-------YTVYGAARRV----DKMEDLASLGVHPLSLDVTDEASIKAAV 65 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHH----H-CC-------CEEEEEeCCH----HHHHHHHhCCCeEEEeeCCCHHHHHHHH
Confidence 3568999997 344444444443 3 36 3677776641 1000011111111 11222223455566
Q ss_pred ccc-----CCcEEEeccCCC
Q 007904 402 KVI-----KPTILIGSSGVG 416 (585)
Q Consensus 402 ~~v-----kptvLIG~S~~~ 416 (585)
+.+ ++|+||=..+..
T Consensus 66 ~~~~~~~~~id~li~~ag~~ 85 (273)
T PRK06182 66 DTIIAEEGRIDVLVNNAGYG 85 (273)
T ss_pred HHHHHhcCCCCEEEECCCcC
Confidence 544 799999877653
No 409
>PRK07588 hypothetical protein; Provisional
Probab=44.40 E-value=27 Score=37.08 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.1
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 007904 326 HRFLFLGAGEAGTGIAELIAL 346 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~ 346 (585)
.+|+|+|||.||+..|-.|.+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~ 21 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR 21 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH
Confidence 379999999999999988765
No 410
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=44.38 E-value=64 Score=31.72 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=24.2
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 322 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 322 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
++++++++|.|| |..|..+|+.+++ .|. ++.++|++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~-----~G~-------~V~~~~r~ 43 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQ-----AGA-------EVILNGRD 43 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHH-----cCC-------EEEEEeCC
Confidence 577899999997 5555555555543 363 57777764
No 411
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=44.37 E-value=25 Score=38.44 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=18.3
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 007904 326 HRFLFLGAGEAGTGIAELIAL 346 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~ 346 (585)
-.|+|+|||.||...|-.|.+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~ 26 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR 26 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh
Confidence 469999999999999988765
No 412
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=44.33 E-value=45 Score=35.29 Aligned_cols=38 Identities=29% Similarity=0.312 Sum_probs=28.3
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHH--cCCCCcEEEecCCCCC
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMA--SFNEKPLILALSNPTS 444 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma--~~~erPIIFaLSNPt~ 444 (585)
+-|++||+|..|. |++++..+. +...-|+|.=-+||.+
T Consensus 131 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~tI~IT~~~~s 170 (299)
T PRK05441 131 AKDVVVGIAASGR--TPYVIGALEYARERGALTIGISCNPGS 170 (299)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 5799999999876 999999884 3334566666666763
No 413
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=44.13 E-value=2e+02 Score=31.28 Aligned_cols=138 Identities=13% Similarity=0.181 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcCCceeeeeecCCCchHHHHHHHHcCCCeeecc-CCCchHHHHHHHHHHHHHHhC-CCcccceEEEeCc
Q 007904 256 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFND-DIQGTASVVLAGVVAALKLIG-GTLAEHRFLFLGA 333 (585)
Q Consensus 256 idefv~av~~~fGp~~lIq~EDf~~~~af~lL~ryr~~~~~FnD-DiQGTaaV~lAgll~A~r~~g-~~l~d~riv~~GA 333 (585)
+.+.+..+. +| .++++ +--+ ...+.+.+.+| .++||.|= +-..--+=+|+=++.-.+..| +.+++.+|+++|-
T Consensus 90 l~Dtarvls-~y-~D~iv-iR~~-~~~~~~~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g~~~l~gl~va~vGD 164 (334)
T PRK12562 90 IKDTARVLG-RM-YDGIQ-YRGH-GQEVVETLAEY-AGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGD 164 (334)
T ss_pred HHHHHHHHH-Hh-CCEEE-EECC-chHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhCCCCcCCcEEEEECC
Confidence 444444444 45 34333 2222 22344444444 47999993 333444567788887777776 4699999999998
Q ss_pred chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc-CC---CCCHHHHhcccCCcEE
Q 007904 334 GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EP---VNNLLDAVKVIKPTIL 409 (585)
Q Consensus 334 GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~-~~---~~~L~e~v~~vkptvL 409 (585)
+.- .+++-++.++.+ .|+ +++++-.+|+.-.. + ..+.-+.+++.. .. ..++.|+++. .||+
T Consensus 165 ~~~--~v~~S~~~~~~~-~G~-------~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~d~~~a~~~--aDvv 229 (334)
T PRK12562 165 ARN--NMGNSMLEAAAL-TGL-------DLRLVAPQACWPEA--S-LVAECSALAQKHGGKITLTEDIAAGVKG--ADFI 229 (334)
T ss_pred CCC--CHHHHHHHHHHH-cCC-------EEEEECCcccCCcH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEE
Confidence 742 367777666655 475 68888888763321 1 111112333321 11 2689999997 9999
Q ss_pred Eecc
Q 007904 410 IGSS 413 (585)
Q Consensus 410 IG~S 413 (585)
.-.+
T Consensus 230 yt~~ 233 (334)
T PRK12562 230 YTDV 233 (334)
T ss_pred EEcC
Confidence 9765
No 414
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=44.03 E-value=50 Score=34.29 Aligned_cols=35 Identities=17% Similarity=0.279 Sum_probs=26.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 368 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 368 (585)
.||.|+|+|.-|-.++.-|++. |.- ...+|+++|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~-----g~~---~~~~I~v~~r 37 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK-----NIV---SPDQIICSDL 37 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC-----CCC---CCceEEEECC
Confidence 4799999999999999888652 531 2356888886
No 415
>PRK12831 putative oxidoreductase; Provisional
Probab=44.02 E-value=29 Score=38.57 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=27.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
...+|+|+|+|.||+..|..+... |. ++.++|+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~-----G~-------~V~v~e~~ 172 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM-----GY-------DVTIFEAL 172 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEecC
Confidence 567999999999999999888763 63 57888864
No 416
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=44.00 E-value=34 Score=36.51 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=29.4
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCc
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 371 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 371 (585)
++-.|+|+|||.+|+.+|-.|.+. .|. +++.++|++.+
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~----~g~------~~V~vle~~~~ 66 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKE----HGI------TNVAVLEKGWL 66 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHh----cCC------CeEEEEEcccc
Confidence 455799999999999999888752 253 47889998643
No 417
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=43.91 E-value=25 Score=36.60 Aligned_cols=31 Identities=26% Similarity=0.471 Sum_probs=24.2
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 328 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 328 iv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
|+|+|||.||+-.|-.|.+ .|+ ++.++|+.-
T Consensus 2 ViIvGaG~aGl~~A~~L~~-----~G~-------~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALAR-----SGL-------KIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 8999999999999987765 364 466777763
No 418
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=43.85 E-value=28 Score=40.53 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=27.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
...+|+|+|+|.||+..|..|... |. ++.++|+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~-----G~-------~Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK-----GH-------DVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEecC
Confidence 457999999999999999888652 53 57788764
No 419
>PRK08244 hypothetical protein; Provisional
Probab=43.78 E-value=27 Score=38.67 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.6
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 007904 326 HRFLFLGAGEAGTGIAELIAL 346 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~ 346 (585)
..|+|+|||.+|+..|-.|.+
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~ 23 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELAL 23 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHH
Confidence 469999999999999988865
No 420
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=43.71 E-value=95 Score=30.71 Aligned_cols=76 Identities=18% Similarity=0.223 Sum_probs=40.1
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchh-hccccCCCCCHHHH
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP-WAHEHEPVNNLLDA 400 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~-fa~~~~~~~~L~e~ 400 (585)
.|++.+++|.|++. ||...++..|.+ .| .+++++|++.- .+...+.. +.-|.....++.++
T Consensus 6 ~l~~k~vlItG~s~---gIG~~la~~l~~-~G-------~~v~~~~~~~~-------~~~~~~~~~~~~D~~~~~~~~~~ 67 (266)
T PRK06171 6 NLQGKIIIVTGGSS---GIGLAIVKELLA-NG-------ANVVNADIHGG-------DGQHENYQFVPTDVSSAEEVNHT 67 (266)
T ss_pred cCCCCEEEEeCCCC---hHHHHHHHHHHH-CC-------CEEEEEeCCcc-------ccccCceEEEEccCCCHHHHHHH
Confidence 46788999999753 455555555554 36 36777776421 11111111 11121222345555
Q ss_pred hccc-----CCcEEEeccCC
Q 007904 401 VKVI-----KPTILIGSSGV 415 (585)
Q Consensus 401 v~~v-----kptvLIG~S~~ 415 (585)
++.+ ++|+||=+.+.
T Consensus 68 ~~~~~~~~g~id~li~~Ag~ 87 (266)
T PRK06171 68 VAEIIEKFGRIDGLVNNAGI 87 (266)
T ss_pred HHHHHHHcCCCCEEEECCcc
Confidence 5543 67999977654
No 421
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=43.37 E-value=36 Score=35.29 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=30.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhh-h---cCeEEEEcCCC
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE-T---RKKICLVDSKG 370 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~ee-A---~~~i~lvD~~G 370 (585)
+..||+++|+|.-|.-+++.|+.. |+...+ . --+|.++|.+-
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~-----G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARL-----HHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHc-----cccccccCCCCCCEEEEECCCE
Confidence 568999999999999999999875 321100 0 02899999873
No 422
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=43.27 E-value=1.3e+02 Score=31.58 Aligned_cols=83 Identities=20% Similarity=0.335 Sum_probs=50.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcccC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 405 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vk 405 (585)
+||.|+|.|+.+. +|..+...|.+ .| ++.++++..... +. .... + -+
T Consensus 48 ~~I~i~G~G~S~~-~a~~~~~~l~~-~g-------~~~~~~~~~~~~----------------~~--~~~~----~--~~ 94 (326)
T PRK10892 48 GKVVVMGMGKSGH-IGRKMAATFAS-TG-------TPSFFVHPGEAA----------------HG--DLGM----V--TP 94 (326)
T ss_pred CeEEEEeCcHhHH-HHHHHHHHHhc-CC-------ceeEEeChHHhh----------------cc--cccc----C--CC
Confidence 6999999997775 77666666654 35 334433221000 00 0000 1 14
Q ss_pred CcEEEeccCCCCCCCHHHHHHH--HcCCCCcEEEecCCCC
Q 007904 406 PTILIGSSGVGRTFTKEVIEAM--ASFNEKPLILALSNPT 443 (585)
Q Consensus 406 ptvLIG~S~~~g~Ft~evi~~M--a~~~erPIIFaLSNPt 443 (585)
-|++|++|..|. |+++++.+ |+.+.-|+|-==+||.
T Consensus 95 ~d~~I~iS~sG~--t~~~~~~~~~ak~~g~~vi~iT~~~~ 132 (326)
T PRK10892 95 QDVVIAISNSGE--SSEILALIPVLKRLHVPLICITGRPE 132 (326)
T ss_pred CCEEEEEeCCCC--CHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 689999999775 88888877 4445557776555555
No 423
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=43.18 E-value=29 Score=42.90 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=28.5
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
-+..||+|+|||.||+..|..|... |. ++.++|+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~-----G~-------~VtV~Ek~ 571 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARA-----GH-------PVTVFERE 571 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHc-----CC-------eEEEEecc
Confidence 4568999999999999999998653 63 58888865
No 424
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=43.12 E-value=30 Score=36.22 Aligned_cols=33 Identities=30% Similarity=0.306 Sum_probs=26.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCc
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 371 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 371 (585)
.|+|+|||.+|+.+|-.|.+ .| .++.++|+...
T Consensus 2 dvvIIGaGi~G~s~A~~La~-----~g-------~~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAK-----HG-------KKTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeccCC
Confidence 58999999999999988764 26 35888888654
No 425
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=43.10 E-value=53 Score=35.78 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=29.8
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
..|++.+|.|+|-|+-|-++|+.|... |+ ++++.|+.
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~-----G~-------~ViV~~r~ 48 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDS-----GV-------EVVVGVRP 48 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHC-----cC-------EEEEEECc
Confidence 357899999999999999999999764 75 46666653
No 426
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=43.08 E-value=77 Score=31.01 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=23.2
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 322 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 322 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.++..+++|.|| |..|..+++.|++ .|. +++++++.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~-----~G~-------~v~~~~r~ 40 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELAR-----AGA-------AVAIADLN 40 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHH-----CCC-------eEEEEeCC
Confidence 355678999998 5555555555543 363 57777764
No 427
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=43.07 E-value=21 Score=43.98 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=34.6
Q ss_pred CCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 321 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 321 ~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
++|++.+|+|+|+|.-|.=||+.|+.+ |+ ++|.++|.+-
T Consensus 20 ~kL~~s~VLIiG~gGLG~EiaKnL~la-----GV------g~iti~D~d~ 58 (1008)
T TIGR01408 20 QKMAKSNVLISGMGGLGLEIAKNLVLA-----GV------KSVTLHDTEK 58 (1008)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCCe
Confidence 568899999999999999999999875 87 8999999873
No 428
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=43.07 E-value=37 Score=35.92 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=27.6
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
..++|+|+|+|.||+..|..+.+ .| .++.++|+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~-----~g-------~~v~lie~~ 50 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLAC-----LG-------YEVHVYDKL 50 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH-----CC-------CcEEEEeCC
Confidence 45799999999999999888864 25 468888875
No 429
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=42.97 E-value=29 Score=38.09 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=25.1
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 328 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 328 iv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+||+|||+||+..|..+.+ .| .++.++|++
T Consensus 3 vvVIGaGpaG~~aA~~aa~-----~g-------~~v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAE-----LG-------ASVAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHH-----CC-------CeEEEEeCC
Confidence 7999999999999888765 26 478899975
No 430
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=42.86 E-value=36 Score=31.10 Aligned_cols=99 Identities=14% Similarity=0.178 Sum_probs=50.6
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchh--c-hhhccccCCCCCHHHHhccc
Q 007904 328 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF--K-KPWAHEHEPVNNLLDAVKVI 404 (585)
Q Consensus 328 iv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~--k-~~fa~~~~~~~~L~e~v~~v 404 (585)
|+|+|+|+.|.-+|-.|.++ | .++.++++...+-.-+...+.-. . ....+........ ....-
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-----g-------~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~ 66 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-----G-------HDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAP--SADAG 66 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-----T-------CEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSH--GHHHS
T ss_pred CEEECcCHHHHHHHHHHHHC-----C-------CceEEEEccccHHhhhheeEEEEecccceecccccccCcc--hhccC
Confidence 78999999999998888763 4 46888888651110000011000 0 0000000001111 12233
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCc-EEEecCCC
Q 007904 405 KPTILIGSSGVGRTFTKEVIEAMASFNEKP-LILALSNP 442 (585)
Q Consensus 405 kptvLIG~S~~~g~Ft~evi~~Ma~~~erP-IIFaLSNP 442 (585)
++|++|=+.... =++++++.++.+...- .|+.+-|=
T Consensus 67 ~~D~viv~vKa~--~~~~~l~~l~~~~~~~t~iv~~qNG 103 (151)
T PF02558_consen 67 PYDLVIVAVKAY--QLEQALQSLKPYLDPNTTIVSLQNG 103 (151)
T ss_dssp TESEEEE-SSGG--GHHHHHHHHCTGEETTEEEEEESSS
T ss_pred CCcEEEEEeccc--chHHHHHHHhhccCCCcEEEEEeCC
Confidence 588887443322 2678888887655542 55556664
No 431
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=42.77 E-value=1.4e+02 Score=33.74 Aligned_cols=36 Identities=19% Similarity=0.411 Sum_probs=29.5
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+.++||+++|-|-.|+++|+.|.+. | -+++++|.+
T Consensus 4 ~~~~~kv~V~GLG~sG~a~a~~L~~~-----G-------~~v~v~D~~ 39 (448)
T COG0771 4 DFQGKKVLVLGLGKSGLAAARFLLKL-----G-------AEVTVSDDR 39 (448)
T ss_pred cccCCEEEEEecccccHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 34589999999999999999999863 6 368888864
No 432
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=42.76 E-value=31 Score=36.85 Aligned_cols=33 Identities=21% Similarity=0.444 Sum_probs=25.0
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
..+|+|+|||.||+-.|-.|.+ .|+ ++.++|+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~-----~G~-------~v~v~E~~ 34 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL-----AGI-------DSVVLERR 34 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh-----cCC-------CEEEEEcC
Confidence 3679999999999999887765 375 35566654
No 433
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=42.69 E-value=24 Score=37.63 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=25.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
-.|+|+|||.+|+..|-.|.+ .|+ ++.++|+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQG-----SGL-------EVLLLDGG 34 (405)
T ss_pred ccEEEECccHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 369999999999999988754 365 57777765
No 434
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=42.61 E-value=74 Score=31.04 Aligned_cols=145 Identities=15% Similarity=0.188 Sum_probs=87.4
Q ss_pred hhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEeeC--cccccCCCCCCc--ccccchhhHHHHHHhcCCCCCceeeE
Q 007904 147 IFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDG--ERILGLGDLGCQ--GMGIPVGKLALYTALGGIRPSACLPI 222 (585)
Q Consensus 147 i~r~p~Glyls~~d~g~i~~~l~nwp~~~v~viVVTDG--~rILGLGDlG~~--GmgI~iGKl~LY~a~gGI~P~~~lPV 222 (585)
+-+++.|+-++..|.....+.++.+...++.|+.+-.. ..-..+--.|.+ .+|-..|+..+-....+ ..|
T Consensus 52 i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~------~~v 125 (257)
T PF13407_consen 52 ISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK------GKV 125 (257)
T ss_dssp HHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT------EEE
T ss_pred HHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccC------ceE
Confidence 45779999999999988888998888888988887555 222222233333 46777777777766655 344
Q ss_pred EeccCCCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCCceeee---eecCCCchHHHHHHHHcCC---Cee
Q 007904 223 TVDVGTNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQ---FEDFANHNAFELLAKYGTT---HLV 296 (585)
Q Consensus 223 ~LDvGTnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq---~EDf~~~~af~lL~ryr~~---~~~ 296 (585)
++=.|..+ .....+.++-|.+++++ ++.-.++. +.++....+.+.++++-.. -.+
T Consensus 126 ~~~~~~~~------------------~~~~~~r~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~i 186 (257)
T PF13407_consen 126 LILSGSPG------------------NPNTQERLEGFRDALKE-YPGVEIVDEYEYTDWDPEDARQAIENLLQANPVDAI 186 (257)
T ss_dssp EEEESSTT------------------SHHHHHHHHHHHHHHHH-CTTEEEEEEEEECTTSHHHHHHHHHHHHHHTTEEEE
T ss_pred EeccCCCC------------------chHHHHHHHHHHHHHhh-cceeeeeeeeeccCCCHHHHHHHHHHhhhcCCceEE
Confidence 44344211 12233457788888888 64322232 2367777777655555321 123
Q ss_pred eccCCCchHHHHHHHHHHHHHHhCC
Q 007904 297 FNDDIQGTASVVLAGVVAALKLIGG 321 (585)
Q Consensus 297 FnDDiQGTaaV~lAgll~A~r~~g~ 321 (585)
|.- ....+-|++.|++..|+
T Consensus 187 ~~~-----~~~~~~g~~~al~~~g~ 206 (257)
T PF13407_consen 187 IAC-----NDGMALGAAQALQQAGR 206 (257)
T ss_dssp EES-----SHHHHHHHHHHHHHTTC
T ss_pred EeC-----CChHHHHHHHHHHHcCC
Confidence 321 12344477888888887
No 435
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=42.55 E-value=30 Score=39.31 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=27.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+-.|+|+|+|..|+++|..|... |+ ++.++|+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~r-----G~-------~V~LlEk~ 38 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALR-----GL-------RCILVERH 38 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHc-----CC-------eEEEEECC
Confidence 35699999999999999988753 75 57888875
No 436
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=42.49 E-value=37 Score=36.54 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=26.1
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCccc
Q 007904 328 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 373 (585)
Q Consensus 328 iv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~ 373 (585)
|+|+|||.||+.+|..|.+. . .|+ ++.++|+.-.+.
T Consensus 2 viIvGaG~AGl~lA~~L~~~--~-~g~-------~V~lle~~~~~~ 37 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA--R-PDF-------RIRVIEAGRTIG 37 (370)
T ss_pred EEEECccHHHHHHHHHHHhc--C-CCC-------eEEEEeCCCCCC
Confidence 79999999999999877653 1 253 577777754433
No 437
>PRK06199 ornithine cyclodeaminase; Validated
Probab=42.40 E-value=1.3e+02 Score=33.07 Aligned_cols=101 Identities=17% Similarity=0.159 Sum_probs=61.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc------cCCCCCH
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE------HEPVNNL 397 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~------~~~~~~L 397 (585)
.-.++.++|+|.-+...++.++... ..+ ++|+++|+. .. +...+...+.+. -....+.
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~---~~i------~~V~v~~r~----~~---~a~~f~~~~~~~~~~~~~v~~~~s~ 217 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVC---PGI------DTIKIKGRG----QK---SLDSFATWVAETYPQITNVEVVDSI 217 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhc---CCc------cEEEEECCC----HH---HHHHHHHHHHHhcCCCceEEEeCCH
Confidence 4579999999998877777665531 123 788888874 11 122222223221 1124789
Q ss_pred HHHhcccCCcEEEeccCC-------CCCCCHHHHHHHHcCCCCcEEEecCCCCCcCCCCHHH
Q 007904 398 LDAVKVIKPTILIGSSGV-------GRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEE 452 (585)
Q Consensus 398 ~e~v~~vkptvLIG~S~~-------~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~~E~tped 452 (585)
+|+|+. .||++-+++. ..+|..++++ +.--|.+ |. +.|+.++-
T Consensus 218 ~eav~~--ADIVvtaT~s~~~~~s~~Pv~~~~~lk------pG~hv~~---ig-~~eld~~~ 267 (379)
T PRK06199 218 EEVVRG--SDIVTYCNSGETGDPSTYPYVKREWVK------PGAFLLM---PA-ACRIDEGM 267 (379)
T ss_pred HHHHcC--CCEEEEccCCCCCCCCcCcEecHHHcC------CCcEEec---CC-cccCCHHH
Confidence 999987 9999976531 1478888886 3333332 43 36877653
No 438
>PLN02366 spermidine synthase
Probab=42.32 E-value=50 Score=35.18 Aligned_cols=92 Identities=16% Similarity=0.285 Sum_probs=48.4
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCC--CCCHHHHhc
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP--VNNLLDAVK 402 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~--~~~L~e~v~ 402 (585)
..||+++|.|..+ +++.+++. -++ +++.+||-+.-+.+--.+.++.....+..+.-. ..+-.+.++
T Consensus 92 pkrVLiIGgG~G~--~~rellk~----~~v------~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~ 159 (308)
T PLN02366 92 PKKVLVVGGGDGG--VLREIARH----SSV------EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK 159 (308)
T ss_pred CCeEEEEcCCccH--HHHHHHhC----CCC------CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh
Confidence 5799999999864 44444332 122 689999988755432111122111112111000 123333343
Q ss_pred cc---CCcEEEeccCC-----CCCCCHHHHHHHH
Q 007904 403 VI---KPTILIGSSGV-----GRTFTKEVIEAMA 428 (585)
Q Consensus 403 ~v---kptvLIG~S~~-----~g~Ft~evi~~Ma 428 (585)
.. +-|++|-=+.. ..+||++..+.+.
T Consensus 160 ~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~ 193 (308)
T PLN02366 160 NAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVA 193 (308)
T ss_pred hccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHH
Confidence 32 46888864433 2367888888875
No 439
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=42.23 E-value=28 Score=36.84 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=26.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+..|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~-----~G~-------~V~liE~~ 37 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQ-----HGF-------SVAVLEHA 37 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 4579999999999999877754 364 58888875
No 440
>PRK06185 hypothetical protein; Provisional
Probab=41.97 E-value=30 Score=36.83 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=26.2
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
+..|+|+|||.+|+..|-.|.+ .|+ ++.++|++.
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~-----~G~-------~v~liE~~~ 39 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLAR-----AGV-------DVTVLEKHA 39 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecCC
Confidence 4679999999999999877654 375 477788763
No 441
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=41.96 E-value=33 Score=36.55 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=25.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+|+|+|||.||...|-.|.+ .|+ ++.++|+.
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~l~E~~ 35 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAK-----QGR-------SVAVIEGG 35 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEcCC
Confidence 479999999999999977754 375 56777754
No 442
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=41.94 E-value=30 Score=32.70 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=25.7
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+++++|+|+|+|..|+-+|..|.+. | +++.++=++
T Consensus 164 ~~~~k~V~VVG~G~SA~d~a~~l~~~-----g-------~~V~~~~R~ 199 (203)
T PF13738_consen 164 DFKGKRVVVVGGGNSAVDIAYALAKA-----G-------KSVTLVTRS 199 (203)
T ss_dssp GCTTSEEEEE--SHHHHHHHHHHTTT-----C-------SEEEEEESS
T ss_pred hcCCCcEEEEcChHHHHHHHHHHHhh-----C-------CEEEEEecC
Confidence 57789999999999999888777642 3 567766543
No 443
>PRK08013 oxidoreductase; Provisional
Probab=41.91 E-value=31 Score=37.01 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=25.1
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+-.|+|+|||.+|+..|-.|.+ .|+ ++.++|++
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~-----~G~-------~v~viE~~ 35 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG-----SGL-------RVAVLEQR 35 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh-----CCC-------EEEEEeCC
Confidence 3479999999999999877754 375 46677764
No 444
>PLN02342 ornithine carbamoyltransferase
Probab=41.82 E-value=3.5e+02 Score=29.65 Aligned_cols=132 Identities=18% Similarity=0.227 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhcCCceeeeeecCCCchHHHHHHHHcCCCeeec-cCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcc
Q 007904 256 LDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN-DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAG 334 (585)
Q Consensus 256 idefv~av~~~fGp~~lIq~EDf~~~~af~lL~ryr~~~~~Fn-DDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAG 334 (585)
+.+.+.. -.+| .++++ +-.+ ...+.+.+.+| .++|+.| .|-..-=+=+|+=++.-.+..| +|++.||+++|-+
T Consensus 130 l~DTarv-Ls~y-~D~Iv-iR~~-~~~~~~~la~~-~~vPVINA~~~~~HPtQaLaDl~Ti~e~~G-~l~glkva~vGD~ 203 (348)
T PLN02342 130 TRDIARV-LSRY-NDIIM-ARVF-AHQDVLDLAEY-SSVPVINGLTDYNHPCQIMADALTIIEHIG-RLEGTKVVYVGDG 203 (348)
T ss_pred HHHHHHH-HHHh-CCEEE-EeCC-ChHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCC
Confidence 3334433 3456 55555 2222 23334444454 4799999 3333455667888777766666 6999999999987
Q ss_pred hHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcccc-----CCCCCHHHHhcccCCcEE
Q 007904 335 EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-----EPVNNLLDAVKVIKPTIL 409 (585)
Q Consensus 335 sAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~-----~~~~~L~e~v~~vkptvL 409 (585)
. -+++-++.++.+ .|+ ++.++-.+|+.... .....++.. ....++.|+|+. +||+
T Consensus 204 ~---nva~Sli~~~~~-~G~-------~v~~~~P~~~~~~~-------~~~~~a~~~g~~~~~~~~d~~eav~~--aDVv 263 (348)
T PLN02342 204 N---NIVHSWLLLAAV-LPF-------HFVCACPKGYEPDA-------KTVEKARAAGISKIEITNDPAEAVKG--ADVV 263 (348)
T ss_pred c---hhHHHHHHHHHH-cCC-------EEEEECCcccccCH-------HHHHHHHHhCCCcEEEEcCHHHHhCC--CCEE
Confidence 4 388888777766 475 58888888773321 111122211 123689999997 9999
Q ss_pred Eecc
Q 007904 410 IGSS 413 (585)
Q Consensus 410 IG~S 413 (585)
.-.+
T Consensus 264 y~~~ 267 (348)
T PLN02342 264 YTDV 267 (348)
T ss_pred EECC
Confidence 9875
No 445
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=41.78 E-value=4.9e+02 Score=28.31 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=63.8
Q ss_pred CCCeeec--cCCCchHHHHHHHHHHHHHHh---CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEE
Q 007904 292 TTHLVFN--DDIQGTASVVLAGVVAALKLI---GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 366 (585)
Q Consensus 292 ~~~~~Fn--DDiQGTaaV~lAgll~A~r~~---g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lv 366 (585)
.++|+.| |+..---+=+||=++.-.... |+++++.||+++|.+.=+ -++.-++.++....|+ +++++
T Consensus 121 ~~vPVINa~~g~~~HPtQaLaDl~Ti~e~~~~~g~~l~g~kia~vGD~~~~-rv~~Sl~~~l~~~~g~-------~v~~~ 192 (338)
T PRK08192 121 SRVPVINGGDGSNEHPTQALLDLFTIQKELAHAGRGIDGMHIAMVGDLKFG-RTVHSLSRLLCMYKNV-------SFTLV 192 (338)
T ss_pred CCCCEEECCCCCCCCcHHHHHHHHHHHHHhhccCCCcCCCEEEEECcCCCC-chHHHHHHHHHHhcCC-------EEEEE
Confidence 4699999 333333444566666654443 567999999999997311 2223333222211254 68888
Q ss_pred cCCCcccCCCccCCchhchhhcccc----CCCCCHHHHhcccCCcEEEeccCCCCCC
Q 007904 367 DSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLLDAVKVIKPTILIGSSGVGRTF 419 (585)
Q Consensus 367 D~~GLi~~~r~~~l~~~k~~fa~~~----~~~~~L~e~v~~vkptvLIG~S~~~g~F 419 (585)
-.+|+-- ++.-...++.. ....++.|++++ +||+.-.+.+..-|
T Consensus 193 ~P~~~~~-------~~~~~~~~~~~g~~~~~~~d~~ea~~~--aDvvyt~~~q~e~~ 240 (338)
T PRK08192 193 SPKELAM-------PDYVISDIENAGHKITITDQLEGNLDK--ADILYLTRIQEERF 240 (338)
T ss_pred CCccccC-------CHHHHHHHHHcCCeEEEEcCHHHHHcc--CCEEEEcCcccccc
Confidence 8877621 11111122221 113689999997 99999876654333
No 446
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=41.68 E-value=66 Score=33.60 Aligned_cols=106 Identities=13% Similarity=0.164 Sum_probs=55.7
Q ss_pred cccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc-ccCCCCCHHHH
Q 007904 323 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDA 400 (585)
Q Consensus 323 l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~-~~~~~~~L~e~ 400 (585)
+++.+|+|.|| |..|..+++.|++. |- ..+++++|++..-...-...+...+..|.. +-.+..++.++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~-----g~-----~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~ 71 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLEN-----YN-----PKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRA 71 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHh-----CC-----CcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHH
Confidence 45678999997 66777777766542 31 136888876522100000001000111111 21222357777
Q ss_pred hcccCCcEEEeccCCCC----CC------------CHHHHHHHHcCCCCcEEEecC
Q 007904 401 VKVIKPTILIGSSGVGR----TF------------TKEVIEAMASFNEKPLILALS 440 (585)
Q Consensus 401 v~~vkptvLIG~S~~~g----~F------------t~evi~~Ma~~~erPIIFaLS 440 (585)
++. +|++|=+.+... .+ +..+++++.+.+-+.|||.=|
T Consensus 72 ~~~--iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS 125 (324)
T TIGR03589 72 LRG--VDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALST 125 (324)
T ss_pred Hhc--CCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 765 899997766432 11 235667776665567888644
No 447
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=41.63 E-value=32 Score=39.86 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=27.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
..|+|+|||.+|+.+|-.|.+ .|. ++.++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~-----~G~-------~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR-----RGW-------QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH-----CCC-------eEEEEecCC
Confidence 589999999999999998865 364 689999874
No 448
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=41.59 E-value=29 Score=38.84 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=27.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
-.|||+|+|.+|+++|..+.. .|+ ++.+++++
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~-----rG~-------~V~LlEk~ 38 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAG-----RGL-------KVLLCEKD 38 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEECC
Confidence 479999999999999999875 375 48888876
No 449
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=41.58 E-value=17 Score=39.71 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=19.6
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 007904 326 HRFLFLGAGEAGTGIAELIALE 347 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~ 347 (585)
++|+|+|||-||+..|..|.++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~ 23 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKL 23 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhh
Confidence 4799999999999999999764
No 450
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=41.57 E-value=32 Score=35.33 Aligned_cols=37 Identities=27% Similarity=0.454 Sum_probs=28.6
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcc
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 372 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi 372 (585)
.+-.|+|+|||.||+..|..+.+ .| .++.+++++.-+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~-----~G-------~~V~vlEk~~~~ 56 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK-----NG-------LKVCVLERSLAF 56 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH-----CC-------CcEEEEecCCCC
Confidence 46789999999999999887754 36 368888887543
No 451
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=41.55 E-value=29 Score=37.74 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=26.5
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
-.+||+|+|+||+..|..+.+. | .++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~-----g-------~~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKA-----G-------WRVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 4699999999999999888753 5 468999975
No 452
>PRK07538 hypothetical protein; Provisional
Probab=41.55 E-value=31 Score=37.15 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=16.1
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 007904 327 RFLFLGAGEAGTGIAELIAL 346 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~ 346 (585)
+|+|+|||.||+..|-.|.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~ 21 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ 21 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 68899999998888877654
No 453
>PRK08219 short chain dehydrogenase; Provisional
Probab=41.53 E-value=1e+02 Score=29.36 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=15.7
Q ss_pred CCHHHHhccc-CCcEEEeccCCC
Q 007904 395 NNLLDAVKVI-KPTILIGSSGVG 416 (585)
Q Consensus 395 ~~L~e~v~~v-kptvLIG~S~~~ 416 (585)
.++.++++.+ ++|++|-+.+..
T Consensus 60 ~~~~~~~~~~~~id~vi~~ag~~ 82 (227)
T PRK08219 60 EAIAAAVEQLGRLDVLVHNAGVA 82 (227)
T ss_pred HHHHHHHHhcCCCCEEEECCCcC
Confidence 3566666654 689999887764
No 454
>PRK14694 putative mercuric reductase; Provisional
Probab=41.52 E-value=34 Score=37.77 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=27.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+-.++|+|||+||+..|..+.+. | .++.++|+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~-----g-------~~v~lie~~ 38 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATER-----G-------ARVTLIERG 38 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEEcc
Confidence 345799999999999999888763 5 478899975
No 455
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=41.39 E-value=32 Score=37.84 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=26.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
|++|+|+|+||+..|..+.+ .| .++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~-----~g-------~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ-----NG-------KNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh-----CC-------CcEEEEECC
Confidence 89999999999999888866 26 469999975
No 456
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=41.30 E-value=1.1e+02 Score=30.08 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=25.6
Q ss_pred CCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 320 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 320 g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
..++++.+++|.||++ ||...++..|.+ .|. +++++|+.
T Consensus 6 ~~~~~~k~ilItGas~---~IG~~la~~l~~-~G~-------~v~~~~r~ 44 (256)
T PRK06124 6 RFSLAGQVALVTGSAR---GLGFEIARALAG-AGA-------HVLVNGRN 44 (256)
T ss_pred ccCCCCCEEEEECCCc---hHHHHHHHHHHH-cCC-------eEEEEeCC
Confidence 3457889999999732 444455555544 363 68888885
No 457
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=41.26 E-value=64 Score=35.01 Aligned_cols=99 Identities=19% Similarity=0.210 Sum_probs=63.5
Q ss_pred eEEEe-CcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc-ccCCCCCHHHHhccc
Q 007904 327 RFLFL-GAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVI 404 (585)
Q Consensus 327 riv~~-GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~-~~~~~~~L~e~v~~v 404 (585)
+|++. |||-.|--.+.+|+++ | .++.++|. |-+..+ +.+...+-+|-. +-.+..-|.++++..
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~~-----G-------~~vvV~DN--L~~g~~-~~v~~~~~~f~~gDi~D~~~L~~vf~~~ 66 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLKT-----G-------HEVVVLDN--LSNGHK-IALLKLQFKFYEGDLLDRALLTAVFEEN 66 (329)
T ss_pred eEEEecCcchhHHHHHHHHHHC-----C-------CeEEEEec--CCCCCH-HHhhhccCceEEeccccHHHHHHHHHhc
Confidence 44444 6788888888888763 5 57888987 333332 334332223332 212223588999999
Q ss_pred CCcEEEeccC---CC------------CC-CCHHHHHHHHcCCCCcEEEecC
Q 007904 405 KPTILIGSSG---VG------------RT-FTKEVIEAMASFNEKPLILALS 440 (585)
Q Consensus 405 kptvLIG~S~---~~------------g~-Ft~evi~~Ma~~~erPIIFaLS 440 (585)
||+++|=+.+ +| ++ =|-..|++|.+++-+.|||.=|
T Consensus 67 ~idaViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSSt 118 (329)
T COG1087 67 KIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSST 118 (329)
T ss_pred CCCEEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecc
Confidence 9999995543 22 11 1567899999999999999654
No 458
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=41.15 E-value=42 Score=37.21 Aligned_cols=85 Identities=16% Similarity=0.280 Sum_probs=55.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchh---chhhcc-ccCCCCCHHHHh
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF---KKPWAH-EHEPVNNLLDAV 401 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~---k~~fa~-~~~~~~~L~e~v 401 (585)
.+||++|||-.|-.+|..|.+- |- .+|++.|+. .+..+.+... +.+... |..+...|.++|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-----~d------~~V~iAdRs----~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li 66 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-----GD------GEVTIADRS----KEKCARIAELIGGKVEALQVDAADVDALVALI 66 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-----CC------ceEEEEeCC----HHHHHHHHhhccccceeEEecccChHHHHHHH
Confidence 4799999999999999998762 42 689998884 1111111111 122221 334456799999
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHc
Q 007904 402 KVIKPTILIGSSGVGRTFTKEVIEAMAS 429 (585)
Q Consensus 402 ~~vkptvLIG~S~~~g~Ft~evi~~Ma~ 429 (585)
+. .+++|-+-. +-++..++++-.+
T Consensus 67 ~~--~d~VIn~~p--~~~~~~i~ka~i~ 90 (389)
T COG1748 67 KD--FDLVINAAP--PFVDLTILKACIK 90 (389)
T ss_pred hc--CCEEEEeCC--chhhHHHHHHHHH
Confidence 98 598887654 4578888876654
No 459
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=41.03 E-value=29 Score=34.19 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=23.0
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 322 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 322 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+.+.+++|.|+ |.-|..||+.+. + .|. +++++|++
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~----~-~G~-------~v~~~~r~ 39 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYL----A-EGA-------RVVIADIK 39 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHH----H-cCC-------EEEEEcCC
Confidence 467889999997 444544555444 3 363 57888764
No 460
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=40.98 E-value=1.8e+02 Score=30.22 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=28.2
Q ss_pred HHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 007904 397 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 437 (585)
Q Consensus 397 L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIF 437 (585)
+.+.+.. .|++|-.|... .|.-.++++|+ +..|||.
T Consensus 266 ~~~~~~~--adi~v~pS~~E-g~~~~~lEAma--~G~Pvv~ 301 (374)
T TIGR03088 266 VPALMQA--LDLFVLPSLAE-GISNTILEAMA--SGLPVIA 301 (374)
T ss_pred HHHHHHh--cCEEEeccccc-cCchHHHHHHH--cCCCEEE
Confidence 4556665 78899877654 48999999999 6789987
No 461
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=40.91 E-value=33 Score=37.42 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=25.2
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 368 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~ 368 (585)
.++|+|+|.||+..|..+.+. | .++.++|+
T Consensus 3 DvvVIG~G~aGl~aA~~la~~-----G-------~~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQL-----G-------LKVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEec
Confidence 589999999999999888653 6 46889998
No 462
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=40.76 E-value=2.6e+02 Score=30.33 Aligned_cols=136 Identities=18% Similarity=0.245 Sum_probs=78.9
Q ss_pred HHHHHHHHHhcCCceeeeeecCCCchHHHHHHHHcCCCeeec-cCCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcch
Q 007904 257 DEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFN-DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE 335 (585)
Q Consensus 257 defv~av~~~fGp~~lIq~EDf~~~~af~lL~ryr~~~~~Fn-DDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGs 335 (585)
...+..+ .+| .++++ +-.+ ...+.+.+.+| .++|+.| .|-..--+=+||=++.-.+..| .|++.||+++|.+.
T Consensus 92 ~Dt~rvl-s~y-~D~iv-iR~~-~~~~~~~~a~~-~~vPVINa~~~~~HPtQaLaDl~Ti~e~~g-~l~g~~va~vGd~~ 165 (331)
T PRK02102 92 EDTARVL-GRM-YDGIE-YRGF-KQEIVEELAKY-SGVPVWNGLTDEWHPTQMLADFMTMKEHFG-PLKGLKLAYVGDGR 165 (331)
T ss_pred HHHHHHH-hhc-CCEEE-EECC-chHHHHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHhC-CCCCCEEEEECCCc
Confidence 3344433 456 44443 2222 23334444444 4689998 2223344556777666555554 69999999999985
Q ss_pred HHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccc-cCC---CCCHHHHhcccCCcEEEe
Q 007904 336 AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP---VNNLLDAVKVIKPTILIG 411 (585)
Q Consensus 336 Ag~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~-~~~---~~~L~e~v~~vkptvLIG 411 (585)
- ++++-++.++.+ .|+ ++.++-.+|+.... + +-+.-+.+++. ... ..++.|+++. .||+.-
T Consensus 166 ~--~v~~Sl~~~~~~-~g~-------~v~~~~P~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~d~~ea~~~--aDvvyt 230 (331)
T PRK02102 166 N--NMANSLMVGGAK-LGM-------DVRICAPKELWPEE--E-LVALAREIAKETGAKITITEDPEEAVKG--ADVIYT 230 (331)
T ss_pred c--cHHHHHHHHHHH-cCC-------EEEEECCcccccCH--H-HHHHHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEE
Confidence 3 478887777665 464 68888887763321 1 11111223322 111 2689999997 999987
Q ss_pred cc
Q 007904 412 SS 413 (585)
Q Consensus 412 ~S 413 (585)
.+
T Consensus 231 ~~ 232 (331)
T PRK02102 231 DV 232 (331)
T ss_pred cC
Confidence 53
No 463
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=40.60 E-value=33 Score=37.47 Aligned_cols=32 Identities=31% Similarity=0.380 Sum_probs=26.1
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
-.+||+|||.||+..|..+.+. | .++.++|+.
T Consensus 4 yDvvIIG~G~aGl~aA~~l~~~-----g-------~~v~lie~~ 35 (460)
T PRK06292 4 YDVIVIGAGPAGYVAARRAAKL-----G-------KKVALIEKG 35 (460)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 4699999999999999887653 5 478889983
No 464
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=40.59 E-value=35 Score=36.38 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=25.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+|+|+|||-+|+.+|-.|.+. | .++.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~-----g-------~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQA-----G-------HEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 699999999999999887652 5 368888885
No 465
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=40.58 E-value=35 Score=37.44 Aligned_cols=33 Identities=27% Similarity=0.483 Sum_probs=22.7
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcc
Q 007904 328 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 372 (585)
Q Consensus 328 iv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi 372 (585)
|||+|+|.||+.-|-.... .| .++.|+++.+-+
T Consensus 2 VVVvGgG~aG~~AAi~AAr-----~G-------~~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAAR-----AG-------AKVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHHH-----TT-------S-EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHHH-----CC-------CEEEEEECCccC
Confidence 7999999999888766554 37 478999998865
No 466
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=40.47 E-value=82 Score=30.44 Aligned_cols=36 Identities=28% Similarity=0.269 Sum_probs=24.5
Q ss_pred CcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 322 TLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 322 ~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+...+|+|.|| |..|..+++.+.+ .| -+++++++.
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~-----~g-------~~V~~~~r~ 39 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAA-----DG-------AEVIVVDIC 39 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHH-----CC-------CEEEEEeCC
Confidence 356678999996 5666666666654 35 358888774
No 467
>PRK06545 prephenate dehydrogenase; Validated
Probab=40.47 E-value=75 Score=34.16 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHH
Q 007904 326 HRFLFLGAGEAGTGIAELIALE 347 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~ 347 (585)
.||.|+|+|..|..+|..|...
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~ 22 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA 22 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc
Confidence 3799999999999999998763
No 468
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=40.43 E-value=35 Score=37.98 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=21.9
Q ss_pred cccceEEEeCcchHHHHHHHHHHH
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIAL 346 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~ 346 (585)
+.++||+|+|.|..|.++|++|..
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~ 29 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRA 29 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHH
Confidence 567899999999999999999876
No 469
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=40.38 E-value=34 Score=38.21 Aligned_cols=36 Identities=17% Similarity=0.260 Sum_probs=29.3
Q ss_pred cccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 323 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 323 l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
+++++|||+|+|..|+-||..|... .++++++-+.+
T Consensus 202 ~~gk~VvVVG~G~Sg~diA~~L~~~------------a~~V~l~~r~~ 237 (461)
T PLN02172 202 FKNEVVVVIGNFASGADISRDIAKV------------AKEVHIASRAS 237 (461)
T ss_pred cCCCEEEEECCCcCHHHHHHHHHHh------------CCeEEEEEeec
Confidence 5889999999999999999988753 26788876654
No 470
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=40.30 E-value=32 Score=39.17 Aligned_cols=32 Identities=16% Similarity=0.344 Sum_probs=25.4
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
.|+|+|||.||+..|..+... | .++.++|+..
T Consensus 6 DVvIIGgGpAGL~AA~~lar~-----g-------~~V~liE~~~ 37 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRA-----K-------LDTLIIEKDD 37 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHC-----C-------CCEEEEecCC
Confidence 699999999999999877652 5 4688888653
No 471
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=40.24 E-value=36 Score=38.04 Aligned_cols=34 Identities=15% Similarity=0.353 Sum_probs=27.4
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
...+|+|+|+|.||+..|..|.. .|. +++++|+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~-----~g~-------~V~v~e~~ 175 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR-----AGH-------TVTVFERE 175 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-----cCC-------eEEEEecC
Confidence 35799999999999999988865 263 58888865
No 472
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=39.90 E-value=37 Score=36.26 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=26.7
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
..|+|+|||.+|+.+|-.|.+.. .| .++.++|+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~---~g-------~~V~llE~~ 36 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERY---PG-------ARIAVLEKE 36 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhC---CC-------CeEEEEeCC
Confidence 46999999999999998887630 14 468899886
No 473
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=39.86 E-value=1e+02 Score=33.42 Aligned_cols=108 Identities=12% Similarity=0.153 Sum_probs=57.8
Q ss_pred hCCCcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCC--ccCCch-h-chhhcc-ccC
Q 007904 319 IGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR--KDSLQH-F-KKPWAH-EHE 392 (585)
Q Consensus 319 ~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r--~~~l~~-~-k~~fa~-~~~ 392 (585)
.++..+++||+|.|| |-.|..+++.|++ .|. +++.+++..-=.... ...+.. . ...+.. +-.
T Consensus 54 ~~~~~~~~kVLVtGatG~IG~~l~~~Ll~-----~G~-------~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 121 (390)
T PLN02657 54 RSKEPKDVTVLVVGATGYIGKFVVRELVR-----RGY-------NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVT 121 (390)
T ss_pred cccCCCCCEEEEECCCcHHHHHHHHHHHH-----CCC-------EEEEEEechhhccccchhhHHhhhcCCceEEEeeCC
Confidence 456678899999998 7778778877764 263 577777643100000 000000 0 011111 222
Q ss_pred CCCCHHHHhccc--CCcEEEeccCCC-C----CC------CHHHHHHHHcCCCCcEEEe
Q 007904 393 PVNNLLDAVKVI--KPTILIGSSGVG-R----TF------TKEVIEAMASFNEKPLILA 438 (585)
Q Consensus 393 ~~~~L~e~v~~v--kptvLIG~S~~~-g----~F------t~evi~~Ma~~~erPIIFa 438 (585)
+..++.++++.. ++|++|=+.+.. + .+ +..+++.+.+..-+-+|+.
T Consensus 122 d~~~l~~~~~~~~~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~i 180 (390)
T PLN02657 122 DADSLRKVLFSEGDPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLL 180 (390)
T ss_pred CHHHHHHHHHHhCCCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEE
Confidence 234577777765 699999554322 1 11 3456777765554556663
No 474
>PLN02427 UDP-apiose/xylose synthase
Probab=39.84 E-value=92 Score=33.11 Aligned_cols=83 Identities=19% Similarity=0.272 Sum_probs=49.8
Q ss_pred HHHhCCCcccceEEEeCc-chHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCch-------hchhh
Q 007904 316 LKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-------FKKPW 387 (585)
Q Consensus 316 ~r~~g~~l~d~riv~~GA-GsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~-------~k~~f 387 (585)
+...||+++-.||+|.|| |-.|.-+++.|++. .| .+++.+|+.. .....+.+ ...+|
T Consensus 5 ~~~~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~----~g-------~~V~~l~r~~----~~~~~l~~~~~~~~~~~~~~ 69 (386)
T PLN02427 5 LDLDGKPIKPLTICMIGAGGFIGSHLCEKLMTE----TP-------HKVLALDVYN----DKIKHLLEPDTVPWSGRIQF 69 (386)
T ss_pred hcCCCCcccCcEEEEECCcchHHHHHHHHHHhc----CC-------CEEEEEecCc----hhhhhhhccccccCCCCeEE
Confidence 456799999999999996 88888888877652 12 3677787531 00001100 01122
Q ss_pred cc-ccCCCCCHHHHhcccCCcEEEeccCC
Q 007904 388 AH-EHEPVNNLLDAVKVIKPTILIGSSGV 415 (585)
Q Consensus 388 a~-~~~~~~~L~e~v~~vkptvLIG~S~~ 415 (585)
.+ +-.....+.++++. +|++|=+.+.
T Consensus 70 ~~~Dl~d~~~l~~~~~~--~d~ViHlAa~ 96 (386)
T PLN02427 70 HRINIKHDSRLEGLIKM--ADLTINLAAI 96 (386)
T ss_pred EEcCCCChHHHHHHhhc--CCEEEEcccc
Confidence 21 11122357777775 8999977764
No 475
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=39.81 E-value=25 Score=32.57 Aligned_cols=30 Identities=33% Similarity=0.372 Sum_probs=19.8
Q ss_pred HHHHhcccCCcEEEeccCCCCCCCHHHHHHHH
Q 007904 397 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMA 428 (585)
Q Consensus 397 L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma 428 (585)
+.+..+.-+-|+||+.|+.|. ++-+|+.+.
T Consensus 95 ~~~~~~~~~gDvli~iS~SG~--s~~vi~a~~ 124 (138)
T PF13580_consen 95 LLALYDIRPGDVLIVISNSGN--SPNVIEAAE 124 (138)
T ss_dssp HHHHTT--TT-EEEEEESSS---SHHHHHHHH
T ss_pred HHHHcCCCCCCEEEEECCCCC--CHHHHHHHH
Confidence 444433345799999999887 899998774
No 476
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=39.74 E-value=36 Score=37.50 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=26.9
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.-.+||+|+|+||+..|..+.+. | .++.++|+.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~-----G-------~~v~lie~~ 36 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQL-----G-------LKTALVEKG 36 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEEcc
Confidence 34699999999999998887653 6 579999975
No 477
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=39.61 E-value=33 Score=42.35 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=27.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
...+|+|+|||.||+..|..|.. .|. ++.++|+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr-----~G~-------~VTV~Ek~ 569 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR-----AGH-------PVTVFEKK 569 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEecc
Confidence 35799999999999999988865 363 58888865
No 478
>PRK10262 thioredoxin reductase; Provisional
Probab=39.45 E-value=26 Score=36.23 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.1
Q ss_pred ccceEEEeCcchHHHHHHHHHHH
Q 007904 324 AEHRFLFLGAGEAGTGIAELIAL 346 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~ 346 (585)
+..+|+|+|||.||+..|..+.+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~ 27 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAAR 27 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHH
Confidence 56789999999999999888765
No 479
>PLN02568 polyamine oxidase
Probab=39.37 E-value=19 Score=41.14 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=20.9
Q ss_pred ccceEEEeCcchHHHHHHHHHHHH
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALE 347 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~ 347 (585)
+..+|+|+|||.||+..|..|.+.
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~ 27 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTS 27 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhc
Confidence 346899999999999999999864
No 480
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=39.25 E-value=74 Score=30.74 Aligned_cols=46 Identities=26% Similarity=0.313 Sum_probs=28.6
Q ss_pred HHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 312 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 312 ll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+.++...+.-..+++|+++|+|+.|..++++... .| .+++.+++.
T Consensus 122 a~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~-----~g-------~~v~~~~~~ 167 (271)
T cd05188 122 AYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKA-----AG-------ARVIVTDRS 167 (271)
T ss_pred HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHH-----cC-------CeEEEEcCC
Confidence 34445555544568899999999866555544432 35 357777664
No 481
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=39.23 E-value=3.8e+02 Score=34.12 Aligned_cols=66 Identities=20% Similarity=0.312 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhccc-----CCcEEEecc
Q 007904 339 GIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI-----KPTILIGSS 413 (585)
Q Consensus 339 GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~v-----kptvLIG~S 413 (585)
-|++.+++.+.++.|++. ++|+ +|.- ..+-+-+ .+ .+..++. . -.|+|+.+ ..-+++|+|
T Consensus 486 ~i~~~~~~~~~~~~Gi~~----edIi-~DP~-i~~v~~g--~~-e~n~~~~-----~-~le~i~~ik~~~pg~~~~~GlS 550 (1178)
T TIGR02082 486 EICKRAYNILTEKVGFPP----EDII-FDPN-ILTIATG--IE-EHRRYAI-----N-FIEAIRWIKEELPDAKISGGVS 550 (1178)
T ss_pred HHHHHHHHHHHHHcCCCH----HHEE-EeCC-ccccccC--ch-HHHHHHH-----H-HHHHHHHHHHhCCCCceEEEec
Confidence 388888887775469964 5565 7762 2221111 11 1111221 2 23566666 467999999
Q ss_pred CCCCCC
Q 007904 414 GVGRTF 419 (585)
Q Consensus 414 ~~~g~F 419 (585)
...=-|
T Consensus 551 N~SFgl 556 (1178)
T TIGR02082 551 NVSFSF 556 (1178)
T ss_pred ccccCC
Confidence 876445
No 482
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=39.18 E-value=35 Score=35.71 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=25.0
Q ss_pred eEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 327 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.|+|+|||-+|+.+|-.|.+. | .++.++|+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~-----G-------~~V~vle~~ 32 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARR-----G-------LSVTVIERS 32 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 489999999999999888652 5 358888875
No 483
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=39.18 E-value=40 Score=39.06 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=28.5
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
...||+|+|+|.||+..|..|.+. |. ++.++|+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~-----G~-------~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA-----GV-------QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc-----CC-------cEEEEeCCC
Confidence 579999999999999999888753 64 477888763
No 484
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=39.17 E-value=30 Score=36.65 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=17.7
Q ss_pred eEEEeCcchHHHHHHHHHHH
Q 007904 327 RFLFLGAGEAGTGIAELIAL 346 (585)
Q Consensus 327 riv~~GAGsAg~GIA~ll~~ 346 (585)
.|+|+|||.||+..|-.|.+
T Consensus 3 dv~IvGaG~aGl~~A~~L~~ 22 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQ 22 (403)
T ss_pred CEEEECccHHHHHHHHHHhc
Confidence 58999999999999988765
No 485
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=39.17 E-value=34 Score=36.68 Aligned_cols=33 Identities=15% Similarity=0.398 Sum_probs=25.5
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.-.|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~-----~G~-------~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE-----SDL-------RIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------EEEEEcCC
Confidence 3479999999999999977654 375 47777774
No 486
>PRK06834 hypothetical protein; Provisional
Probab=38.94 E-value=38 Score=37.90 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=27.7
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
.+..|+|+|||.+|+-.|-.|.+ .|+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~-----~G~-------~v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELAL-----AGV-------DVAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecCC
Confidence 45789999999999999988865 375 477788754
No 487
>PRK05868 hypothetical protein; Validated
Probab=38.79 E-value=38 Score=36.22 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=17.1
Q ss_pred ceEEEeCcchHHHHHHHHHHH
Q 007904 326 HRFLFLGAGEAGTGIAELIAL 346 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~ 346 (585)
.+|+|+|||.||+..|-.|.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~ 22 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR 22 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 378999999999888877654
No 488
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=38.73 E-value=34 Score=36.17 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=26.3
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
...|+|+|||.+|+..|-.|.+ .|+ ++.++|++-
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~-----~G~-------~v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALAR-----AGA-------SVALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhc-----CCC-------eEEEEeCCC
Confidence 3579999999999999877654 364 578888763
No 489
>PRK08813 threonine dehydratase; Provisional
Probab=38.57 E-value=3.8e+02 Score=29.19 Aligned_cols=151 Identities=17% Similarity=0.296 Sum_probs=79.9
Q ss_pred cCCCcccccccCcchHHHHHhcCCCCC-eeEEEEeeCcccccCCCCCCcccccchhhHHHHHHhcCCCCCceeeEEeccC
Q 007904 149 RRPQGLYISLKEKGKILEVLKNWPERS-IQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPITVDVG 227 (585)
Q Consensus 149 r~p~Glyls~~d~g~i~~~l~nwp~~~-v~viVVTDG~rILGLGDlG~~GmgI~iGKl~LY~a~gGI~P~~~lPV~LDvG 227 (585)
.+|-|-| +|||-...+..--.... ..|+..|.|. .| + -++.|.+..|+. |. |++..+
T Consensus 57 ~nptGSf---K~RgA~~~l~~a~~~~~~~~VV~aSsGN-------~G---~-----alA~aa~~~Gi~---~~-IvvP~~ 114 (349)
T PRK08813 57 LQRTGSY---KVRGALNALLAGLERGDERPVICASAGN-------HA---Q-----GVAWSAYRLGVQ---AI-TVMPHG 114 (349)
T ss_pred CCCcCCC---HHHHHHHHHHHHHHcCCCCeEEEECCCH-------HH---H-----HHHHHHHHcCCC---EE-EEEcCC
Confidence 4565555 88886654442211111 1355555443 22 1 246678888887 66 555666
Q ss_pred CCchhcccCccccccccCCCChhhhHHHHHHHHHHHHHhcCCceeeeeecCCCchHHHHHHHHcC-CCeee-c--cCC--
Q 007904 228 TNNEQLLKDEFYIGLRQRRATGQEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGT-THLVF-N--DDI-- 301 (585)
Q Consensus 228 Tnne~Ll~DP~YlG~r~~R~~g~~y~~~idefv~av~~~fGp~~lIq~EDf~~~~af~lL~ryr~-~~~~F-n--DDi-- 301 (585)
++ ...++.+ +.||.+++..=. ....|.+.-+++.. +=..| | ||.
T Consensus 115 ~~---------------------------~~K~~~i-~~~GAeVv~~g~--~~~~a~~~a~~la~~~g~~~v~~~~np~~ 164 (349)
T PRK08813 115 AP---------------------------QTKIAGV-AHWGATVRQHGN--SYDEAYAFARELADQNGYRFLSAFDDPDV 164 (349)
T ss_pred CC---------------------------HHHHHHH-HHcCCEEEEECC--CHHHHHHHHHHHHHhcCCEEcCccCChHH
Confidence 54 2334444 568887665522 34555555555542 11122 1 122
Q ss_pred -CchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCc
Q 007904 302 -QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 371 (585)
Q Consensus 302 -QGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GL 371 (585)
+|-+.+ ++.+.... -|.-|+=+|.|.--.||+.-+.+ .| -+|+.++..|-
T Consensus 165 i~G~~Ti-------g~EI~e~~-pD~VvvpvGgGGliaGia~~lk~-----~~-------~rVigVqpega 215 (349)
T PRK08813 165 IAGQGTV-------GIELAAHA-PDVVIVPIGGGGLASGVALALKS-----QG-------VRVVGAQVEGV 215 (349)
T ss_pred HHHHHHH-------HHHHHcCC-CCEEEEEeCccHHHHHHHHHHhc-----CC-------CEEEEEEECCC
Confidence 121111 13333332 37888888888888888865532 23 38998988653
No 490
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=38.45 E-value=71 Score=32.96 Aligned_cols=94 Identities=19% Similarity=0.234 Sum_probs=49.0
Q ss_pred cceEEEeCcchHHHHHHHH-HHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhccccCCCCCHHHHhcc
Q 007904 325 EHRFLFLGAGEAGTGIAEL-IALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 403 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~l-l~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~ 403 (585)
..||.|+|+| |++.. ...++....+. ..-+.++|++ . +......+.|--+ .-..++.|.++.
T Consensus 3 ~irvgiiG~G----~~~~~~~~~~~~~~~~~-----~~~vav~d~~----~---~~a~~~a~~~~~~-~~~~~~~~ll~~ 65 (342)
T COG0673 3 MIRVGIIGAG----GIAGKAHLPALAALGGG-----LELVAVVDRD----P---ERAEAFAEEFGIA-KAYTDLEELLAD 65 (342)
T ss_pred eeEEEEEccc----HHHHHHhHHHHHhCCCc-----eEEEEEecCC----H---HHHHHHHHHcCCC-cccCCHHHHhcC
Confidence 4689999998 34432 33333321110 1334555553 1 1122222223211 235789999999
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHc-----CCCCcEEE
Q 007904 404 IKPTILIGSSGVGRTFTKEVIEAMAS-----FNEKPLIL 437 (585)
Q Consensus 404 vkptvLIG~S~~~g~Ft~evi~~Ma~-----~~erPIIF 437 (585)
-++|+++ ..++. .+..+++.+-.+ .||+|+-.
T Consensus 66 ~~iD~V~-Iatp~-~~H~e~~~~AL~aGkhVl~EKPla~ 102 (342)
T COG0673 66 PDIDAVY-IATPN-ALHAELALAALEAGKHVLCEKPLAL 102 (342)
T ss_pred CCCCEEE-EcCCC-hhhHHHHHHHHhcCCEEEEcCCCCC
Confidence 7788877 55534 466666643322 35677643
No 491
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=38.29 E-value=2.3e+02 Score=30.67 Aligned_cols=107 Identities=19% Similarity=0.220 Sum_probs=68.2
Q ss_pred CCCeeecc-CCCchHHHHHHHHHHHHHHhCCCcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 292 TTHLVFND-DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 292 ~~~~~FnD-DiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
.++|++|= |-..--+=+|+=++.-.+....++++.||+++|-+.. .+++-++.++.+ .|+ ++.++=.+|
T Consensus 121 s~vPVINa~~~~~HPtQaL~Dl~Ti~e~~~g~l~g~kia~vGD~~~--~v~~Sl~~~~~~-~g~-------~v~~~~P~~ 190 (332)
T PRK04284 121 SGVPVWNGLTDEDHPTQVLADFLTAKEHLKKPYKDIKFTYVGDGRN--NVANALMQGAAI-MGM-------DFHLVCPKE 190 (332)
T ss_pred CCCCEEECCCCCCChHHHHHHHHHHHHHhcCCcCCcEEEEecCCCc--chHHHHHHHHHH-cCC-------EEEEECCcc
Confidence 47999992 2233445567777776665234699999999999832 477777776665 475 588888877
Q ss_pred cccCCCccCCchhchhhccccC----CCCCHHHHhcccCCcEEEecc
Q 007904 371 LIVSSRKDSLQHFKKPWAHEHE----PVNNLLDAVKVIKPTILIGSS 413 (585)
Q Consensus 371 Li~~~r~~~l~~~k~~fa~~~~----~~~~L~e~v~~vkptvLIG~S 413 (585)
+.-.. +-+. .-+.+++... ...++.|+++. +||+.-.+
T Consensus 191 ~~~~~--~~~~-~~~~~~~~~g~~~~~~~d~~ea~~~--aDvvy~~~ 232 (332)
T PRK04284 191 LNPDD--ELLN-KCKEIAAETGGKITITDDIDEGVKG--SDVIYTDV 232 (332)
T ss_pred ccCCH--HHHH-HHHHHHHHcCCeEEEEcCHHHHhCC--CCEEEECC
Confidence 73321 1111 1123332211 13689999997 99998754
No 492
>PRK06398 aldose dehydrogenase; Validated
Probab=38.21 E-value=1.5e+02 Score=29.43 Aligned_cols=74 Identities=12% Similarity=0.308 Sum_probs=38.2
Q ss_pred CcccceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCCcccCCCccCCchhchhhcc-ccCCCCCHHHH
Q 007904 322 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDA 400 (585)
Q Consensus 322 ~l~d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~GLi~~~r~~~l~~~k~~fa~-~~~~~~~L~e~ 400 (585)
++++++++|.||.+ ||...++..+.+ .| .++++++++- .. .. +..+.. |-....++.++
T Consensus 3 ~l~gk~vlItGas~---gIG~~ia~~l~~-~G-------~~Vi~~~r~~----~~---~~--~~~~~~~D~~~~~~i~~~ 62 (258)
T PRK06398 3 GLKDKVAIVTGGSQ---GIGKAVVNRLKE-EG-------SNVINFDIKE----PS---YN--DVDYFKVDVSNKEQVIKG 62 (258)
T ss_pred CCCCCEEEEECCCc---hHHHHHHHHHHH-CC-------CeEEEEeCCc----cc---cC--ceEEEEccCCCHHHHHHH
Confidence 46778999999742 333334444443 36 3678777641 11 11 111111 22222345555
Q ss_pred hccc-----CCcEEEeccCC
Q 007904 401 VKVI-----KPTILIGSSGV 415 (585)
Q Consensus 401 v~~v-----kptvLIG~S~~ 415 (585)
++.+ ++|+||=..+.
T Consensus 63 ~~~~~~~~~~id~li~~Ag~ 82 (258)
T PRK06398 63 IDYVISKYGRIDILVNNAGI 82 (258)
T ss_pred HHHHHHHcCCCCEEEECCCC
Confidence 5543 58999976654
No 493
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=38.12 E-value=1.5e+02 Score=28.80 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=24.2
Q ss_pred CcccceEEEeCcch-HHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 322 TLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 322 ~l~d~riv~~GAGs-Ag~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
.+++.+++|.||++ .|..+|+.++ + .|. +++++|++-
T Consensus 5 ~~~~k~vlItGas~~iG~~la~~l~----~-~G~-------~v~~~~~~~ 42 (252)
T PRK08220 5 DFSGKTVWVTGAAQGIGYAVALAFV----E-AGA-------KVIGFDQAF 42 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHH----H-CCC-------EEEEEecch
Confidence 46778999999854 5555555554 3 363 677787764
No 494
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=38.10 E-value=31 Score=38.34 Aligned_cols=35 Identities=31% Similarity=0.521 Sum_probs=27.8
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
.+||||+|+|-+|+-.|..|.... . .-+|.+||++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~-~---------~~~itLVd~~ 37 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL-P---------DVEITLVDRR 37 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC-C---------CCcEEEEeCC
Confidence 579999999999999998887642 1 2468899885
No 495
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=38.04 E-value=39 Score=36.32 Aligned_cols=33 Identities=15% Similarity=0.358 Sum_probs=25.2
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCCC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 370 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~G 370 (585)
.+|+|+|||.||+..|-.|.+ .|+ ++.++|+.-
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~~ 35 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK-----AGI-------DNVILERQS 35 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH-----CCC-------CEEEEECCC
Confidence 579999999999999977654 376 366677653
No 496
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=37.93 E-value=24 Score=38.70 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=22.2
Q ss_pred ccceEEEeCcchHHHHHHHHHHHHH
Q 007904 324 AEHRFLFLGAGEAGTGIAELIALEI 348 (585)
Q Consensus 324 ~d~riv~~GAGsAg~GIA~ll~~~~ 348 (585)
+..+++++|.|++|+|+|..+..-+
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl 62 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKL 62 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhc
Confidence 5689999999999999999998754
No 497
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=37.92 E-value=25 Score=40.00 Aligned_cols=44 Identities=32% Similarity=0.312 Sum_probs=31.0
Q ss_pred ceEEEeCcchHHHHHHHHHHHHHHhhcCC--ChhhhcCeE-----EEEcCCCcccC
Q 007904 326 HRFLFLGAGEAGTGIAELIALEISKQTKA--PVEETRKKI-----CLVDSKGLIVS 374 (585)
Q Consensus 326 ~riv~~GAGsAg~GIA~ll~~~~~~~~Gl--s~eeA~~~i-----~lvD~~GLi~~ 374 (585)
+||+|+|||-||++.|..|.++ |. +.=||+.++ -..|++|..++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~-----g~~vt~~ea~~~~GGk~~s~~~~dg~~~E 51 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADA-----GYDVTLYEARDRLGGKVASWRDSDGNHVE 51 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhC-----CCceEEEeccCccCceeeeeecCCCCeee
Confidence 5899999999999999999885 65 334555432 12556666553
No 498
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=37.84 E-value=36 Score=38.25 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.0
Q ss_pred cceEEEeCcchHHHHHHHHHHH
Q 007904 325 EHRFLFLGAGEAGTGIAELIAL 346 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~ 346 (585)
..+|+|+|||.+|+..|-.|.+
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~ 44 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQ 44 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHh
Confidence 4579999999999999988765
No 499
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=37.78 E-value=38 Score=37.00 Aligned_cols=33 Identities=24% Similarity=0.452 Sum_probs=27.2
Q ss_pred cceEEEeCcchHHHHHHHHHHHHHHhhcCCChhhhcCeEEEEcCC
Q 007904 325 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 369 (585)
Q Consensus 325 d~riv~~GAGsAg~GIA~ll~~~~~~~~Gls~eeA~~~i~lvD~~ 369 (585)
+-.++|+|||.||+..|..+.+. | .++.++|++
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~-----G-------~~v~liE~~ 37 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKL-----G-------KRVAVIERY 37 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEecc
Confidence 35699999999999999887653 5 579999985
No 500
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=37.62 E-value=37 Score=40.23 Aligned_cols=104 Identities=16% Similarity=0.117 Sum_probs=57.4
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCc--------CCCCHHHHhccccCcEEEecCCCCCcce
Q 007904 402 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ--------SECTAEEAYTWSKGRAIFASGSPFDPFE 473 (585)
Q Consensus 402 ~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~erPIIFaLSNPt~~--------~E~tpeda~~wt~Grai~AsGSPf~pv~ 473 (585)
+.++|+++|..++.. +.-.-|..-.++-+|=|.+=.-||... .+-|.++++...-. |+..-=..||.
T Consensus 416 ~~~~~~~ilasnTS~--l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~---~~~~lgk~pv~ 490 (714)
T TIGR02437 416 QHVREDAILASNTST--ISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVA---YASKMGKTPIV 490 (714)
T ss_pred hhCCCCcEEEECCCC--CCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHHH---HHHHcCCEEEE
Confidence 456899999887743 444333333333444488889999752 34455555443110 11111133444
Q ss_pred eCCeeeCcCCCcccccchhhhHHHHHhCCcccCHHHHHHHH
Q 007904 474 YNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS 514 (585)
Q Consensus 474 ~~G~~~~p~Q~NN~yiFPGiglG~l~~~a~~Itd~m~~aAA 514 (585)
.+ ..||-.=|-..+|-+-=+..+...- +|.+-+-.|.
T Consensus 491 v~---d~pGfi~NRl~~~~~~ea~~l~~eG-~~~~~ID~a~ 527 (714)
T TIGR02437 491 VN---DCPGFFVNRVLFPYFGGFSKLLRDG-ADFVRIDKVM 527 (714)
T ss_pred eC---CcccchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 42 5677777877777766655554433 5666555553
Done!