Query 007906
Match_columns 585
No_of_seqs 146 out of 321
Neff 4.4
Searched_HMMs 46136
Date Thu Mar 28 16:55:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007906.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007906hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2238 Uncharacterized conser 100.0 2.3E-53 5E-58 468.8 4.4 532 5-585 234-795 (795)
2 PF10296 DUF2404: Putative int 99.9 3.5E-25 7.6E-30 191.3 12.1 91 131-221 1-91 (91)
3 KOG2238 Uncharacterized conser 99.8 4.2E-23 9E-28 229.8 -2.5 256 124-397 501-784 (795)
4 COG5038 Ca2+-dependent lipid-b 99.2 7.4E-11 1.6E-15 137.2 10.7 201 125-399 221-429 (1227)
5 KOG3532 Predicted protein kina 99.1 7.2E-11 1.6E-15 131.1 7.4 184 126-399 100-311 (1051)
6 smart00328 BPI1 BPI/LBP/CETP N 44.3 3.4E+02 0.0074 27.1 14.0 27 145-171 8-34 (225)
7 PF01273 LBP_BPI_CETP: LBP / B 38.4 2.3E+02 0.005 26.2 9.0 26 146-171 4-29 (164)
8 COG2905 Predicted signal-trans 22.8 82 0.0018 36.7 3.6 63 131-193 433-517 (610)
9 PF09547 Spore_IV_A: Stage IV 19.8 50 0.0011 37.4 1.2 41 375-418 33-73 (492)
10 COG3495 Uncharacterized protei 16.5 87 0.0019 30.6 1.8 15 328-342 102-116 (166)
No 1
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]
Probab=100.00 E-value=2.3e-53 Score=468.82 Aligned_cols=532 Identities=37% Similarity=0.545 Sum_probs=422.3
Q ss_pred CCCcccccccccccccCCCChhHHHHHHHHHHhhhcCCcccccccccCcchhhhhhhcc--ccC----CCCCcccccccc
Q 007906 5 SPSMGLIADPMEKASRYDGSSSKVRLLWKKLARKASKPCIESKALSSYSGREERKVYEK--FRP----FQDSVLGATSVK 78 (585)
Q Consensus 5 ~~~~~~~~~~~~~~~~~dg~~sk~r~~~k~~~~k~s~~~~~~~~~~~~~~~~~~k~~~~--~~~----~~~~~~~~~~~~ 78 (585)
||+.||+.|..|+.. |.+|||||+++||-.|.+..++--. ++++.|++.- .-+ ..+-+|....+
T Consensus 234 k~~~~~s~e~~dk~t---t~s~~Vrl~g~~~~~k~~~k~v~k~------a~~dp~~~~~~~q~s~~~~~s~i~l~pk~~- 303 (795)
T KOG2238|consen 234 KPSSGFSSENLDKGT---THSSKVRLEGSMFSFKRSDKNVDKE------ARDDPTTNSSLSQNSYSNGSSTISLDPKRL- 303 (795)
T ss_pred CccccCCcccccccc---ccceEEEecccceeEecccccccch------hhccccccccccccccccCCCceecCchhh-
Confidence 678889999999777 7889999999999999987654211 1555555542 222 11112222222
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccccccccc---cCCCCCcccCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHH
Q 007906 79 SRTSKVPNCSGEENAEPLSSTFPRSKSQSQLSVVS---DADSDDKFIVDEATLCWNLLIFRLFFDAKINVGVKSSIQARI 155 (585)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~e~~~~dEst~WlNaLL~RLFfD~~rs~~~~~~Ik~KI 155 (585)
+---|+.+..++.... +.|+..+...|++|.|+|++++|+|+++.+.....+.++++|
T Consensus 304 -------------------a~~~~~~tk~pi~ir~~sh~~ds~skte~d~~T~~ln~~~~rl~~~~k~~~~~~n~~~~r~ 364 (795)
T KOG2238|consen 304 -------------------ANNRHWKTKVPIQIRFGSHDRDSESKTETDEGTLALNAVLGRLFLDLKQPTDLKNSSHERI 364 (795)
T ss_pred -------------------hccccccccCceEEEecccccccccccccchhhhhhhhhcchhhhcccCCccccchHHHHH
Confidence 2223334444444443 455777777799999999999999999999866999999999
Q ss_pred HHHHccCCCCCCCCcEEEEEeecCCCCceeecccccccCCCCcEEEEEeEEEeCCeEEEEEEEEeeeeccccccccccCc
Q 007906 156 QRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVWAFEVDIEYAGGVVLDVETRLEVRELDLHKGIVDANS 235 (585)
Q Consensus 156 QkKLskiklP~FI~eI~VteLdLG~s~P~Is~vrvp~lD~~G~wa~ElDV~Y~Gg~~LtIETkLnL~~l~~~~~~~~~n~ 235 (585)
|+.++++|+|.|++++.+..++.|+.+|+|++++++++.+.|.|+++.||.|.|+.++.++|+|..+....+++++..-.
T Consensus 365 q~~y~~~Rt~~~~eelv~~~vd~~nl~p~i~~~~~l~~~~~gv~~~~~di~y~~d~~~~i~~~v~~~e~~~~~~ie~~~~ 444 (795)
T KOG2238|consen 365 QRIYSKMRTPSYIEELVCRKVDTGNLPPLITSTRVLPVEMSGVWAFEIDIEYRGDLTIIIETRVDIREGSRQKGIEESLL 444 (795)
T ss_pred HHHHhccccchhhhhhhhhhhhhcCCccccccceeEEeeccccccCccceeeccccccccccccchhhhhhcchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988988887755
Q ss_pred cccccCCCCccccchhhhh-cccccccCCCccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCchhhhhh-hhcccceeec
Q 007906 236 EEAGAVGDVSSDLLEGFEY-FGKQLNISEGTFDGQDHKDQGDPKPDGLKNNRSTMPVSTSGSRWKSILN-SIAKQVSQVP 313 (585)
Q Consensus 236 ~~s~S~g~v~sdl~esie~-~G~~f~~s~~s~ds~e~~~~~~~k~d~~~~s~st~~~s~~~sRfk~iv~-sIAe~VS~vP 313 (585)
. +...+.+.+.+++++.+ |.+++.+...+.+.+....+..-. ++.+.+..+...++..++|+++|. +|+.++++.|
T Consensus 445 q-p~k~~~~~s~l~~~~~d~~~kq~~~~~~t~~~~~~~~~~~vs-~~sK~~~~t~~~~~~~s~~~~~L~~ri~~~f~~d~ 522 (795)
T KOG2238|consen 445 Q-PKKIELVKSPLLEGLKDPFEKQIWVPFSTVSAQDVESESIVS-DESKLSEGTKTISAEKSKWKSALKERIVEQFSDDP 522 (795)
T ss_pred C-cchhcccCchhhhhccchhhhceeeeccccCCCccccccccc-ccccCCCCCcchhhhhhhhHHHhhhheeecccCCc
Confidence 4 77788999999998876 888877776666655544432111 345556666666788899998776 5999999999
Q ss_pred EEEEEEEEEEEEEEEEEecCCCCCcEEEEeecCCceEEEEEecccceeechhHHHHHHHHHHHHHHHhhcccCCCCcccc
Q 007906 314 ISLSIRVAALRGTLRLHIKPPPSDQLWFGFTSMPDIEFAMESSVGDHKITSGQVALFLINRFKASIRETMVLPNCESVSV 393 (585)
Q Consensus 314 L~LsV~L~sLsGtLrV~IpPPPSDRlWygF~~~P~LeL~ieP~VGeR~It~~~Vt~~IenkLk~~I~e~lVLPNmdDi~I 393 (585)
+.|.+....|+|+|..+..|||++++|+||..+|+|.+...|.||++.+++.+++....++++..++..|+||+|++ +
T Consensus 523 ~~ls~~~s~lr~kl~~~~~P~~~~~l~~~~ta~pdi~~~~~~~v~e~~~~~~d~~ms~~~~~~~~~rt~~nL~~l~s--~ 600 (795)
T KOG2238|consen 523 IWLSIVSSSLRGKLWEHMKPPPSDQLWFGFTAAPDILQALASKVGEHKITGGDVAMSYIGRFLTALRTKMNLPKLQS--I 600 (795)
T ss_pred eeecchhhhhhheehhccCCchhhhhhhccccchhHHHHhhhhhcccccccchHHHHHHhhHHHHHHhhhccccccc--c
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred cCccCCCCCCccCCCcCceeecCCCCCCCCccccccccCccccccccccccccccCcccccccCCCCCcCCCCCCC-C--
Q 007906 394 PWMSAEKDDWVPRNVAPFIWLNHEANSDQVPACEAFSSQTTEVKTTMEATSVTSIDQPEQKNQNSKNLDCYERPDT-V-- 470 (585)
Q Consensus 394 P~M~s~~dd~vp~~~~p~iw~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-- 470 (585)
|||.+++++||.+..++|+|++.. +.++.+....++.+|.++....+..+..+.+..++.|+++..+.+.+..+ +
T Consensus 601 p~v~aek~~~V~r~~at~~~~~~s--d~d~~ss~es~s~~Dk~~~~~~~~~~~~~E~t~~~~q~~kI~~~vd~~~s~s~~ 678 (795)
T KOG2238|consen 601 PWVAAEKDDWVTRTTATFRDLSSS--DSDTPSSKESSSSEDKPPRPFGDNVGSDMEGTVNIDQKKKIDDSVDERESQSES 678 (795)
T ss_pred cceeeecccceeeecccchhcccc--ccCCccccccccccccCCCCccccccccccccccccccchhhhhhhhccccchh
Confidence 999999999999999999999994 34455556667777877776666555677888888888777555544211 1
Q ss_pred --------CcccccCCCCCCCccccCchhhhhhccccccccch--HH-HHhhccc-ccc-ccCCCCCCCccccccccccc
Q 007906 471 --------SKVTSIPSTSSSTPAIQNSKFLRELRTPLLEIDNS--QE-ACQQNKE-ELS-ECQSPSATSSTQSEKQMIGI 537 (585)
Q Consensus 471 --------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~-~~~-~~~s~~~~~~~~~~~~~~~~ 537 (585)
...-. +.-.|++|.+.++..+||+++||++|.-+ ++ ..++.+. ... --||+.. +..++
T Consensus 679 ~qka~~~~ai~r~-i~~~s~tpL~~~~~~vEe~k~~l~~N~p~ppsd~~~~~~r~~~~~~~k~sps~--------g~~s~ 749 (795)
T KOG2238|consen 679 FQKAAKAEAIRRP-IEDVSNTPLVLLDPEVEELKGPLTENIPPPPSDRNWRGFRRAPIEKLKQSPSS--------GDRSV 749 (795)
T ss_pred hccchhHHhhhcC-ccccCCCchhccChhhhhhcCCCcCCCCCCchhhhhhcccccchhhhccCCcc--------CCccc
Confidence 11112 56789999999999999999999985443 33 3333333 111 1244330 22234
Q ss_pred ccccc--cccCccc-chhhchhhhhhhHHHHHHHHhHHHhhhhhhhhccCC
Q 007906 538 EEDDS--RLKKPGR-RARMLDLGKNMKEKLEEKRRHIEEKGRHIVEKMRGP 585 (585)
Q Consensus 538 ~~~d~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~iv~kmr~~ 585 (585)
+.+|. ..||+|| +++|++++++|+|++|++|| ++.+|||||||
T Consensus 750 ~l~~~~~~ikk~~rq~~q~~~~~p~m~e~~e~v~~-----~~p~vek~r~p 795 (795)
T KOG2238|consen 750 ELDDVDPWIKKKLRQSAQKFDVKPNMDEKNEPVRR-----SDPPVEKMRGP 795 (795)
T ss_pred ccccccHHHHHHHHhhhhccccCcccchhcccccc-----CCCcchhccCC
Confidence 45555 8889999 99999999999999999999 99999999998
No 2
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=99.92 E-value=3.5e-25 Score=191.25 Aligned_cols=91 Identities=33% Similarity=0.646 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHccCCCCCCCCcEEEEEeecCCCCceeecccccccCCCCcEEEEEeEEEeCC
Q 007906 131 NLLIFRLFFDAKINVGVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVWAFEVDIEYAGG 210 (585)
Q Consensus 131 NaLL~RLFfD~~rs~~~~~~Ik~KIQkKLskiklP~FI~eI~VteLdLG~s~P~Is~vrvp~lD~~G~wa~ElDV~Y~Gg 210 (585)
|+|++|+||++++++.|.++|+++||++|+++++|+||++|.|++|+||+.+|.|+++++++++.+|.+.+|+||.|.|+
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G~ 80 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSGG 80 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999996669999999999
Q ss_pred eEEEEEEEEee
Q 007906 211 VVLDVETRLEV 221 (585)
Q Consensus 211 ~~LtIETkLnL 221 (585)
++|+|+|+|++
T Consensus 81 ~~l~l~t~l~~ 91 (91)
T PF10296_consen 81 FSLTLETKLNI 91 (91)
T ss_pred eEEEEEEEEEC
Confidence 99999999985
No 3
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]
Probab=99.85 E-value=4.2e-23 Score=229.75 Aligned_cols=256 Identities=18% Similarity=0.193 Sum_probs=187.9
Q ss_pred CchhHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHccCCCCCCCCcEEEEEeecCCCCceeeccccccc-CCCCcEEEE
Q 007906 124 DEATLCWNLLIFRLFFDAKINVGVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRVLPT-DMNEVWAFE 202 (585)
Q Consensus 124 dEst~WlNaLL~RLFfD~~rs~~~~~~Ik~KIQkKLskiklP~FI~eI~VteLdLG~s~P~Is~vrvp~l-D~~G~wa~E 202 (585)
.+...|.|+|..||||+|.+++.|......+||.+|..+.+|+|++.+... |.++|-|.++-.+.+ ++.|+| .+
T Consensus 501 ~~~s~~~~~L~~ri~~~f~~d~~~ls~~~s~lr~kl~~~~~P~~~~~l~~~----~ta~pdi~~~~~~~v~e~~~~~-~d 575 (795)
T KOG2238|consen 501 AEKSKWKSALKERIVEQFSDDPIWLSIVSSSLRGKLWEHMKPPPSDQLWFG----FTAAPDILQALASKVGEHKITG-GD 575 (795)
T ss_pred hhhhhhHHHhhhheeecccCCceeecchhhhhhheehhccCCchhhhhhhc----cccchhHHHHhhhhhccccccc-ch
Confidence 456779999999999999999999999999999999999999999999988 899999999999888 999999 89
Q ss_pred EeEEEeCCeEEEEEEEEeeeeccccccccccC--cc-c-ccc---CCCCccccchhhhhcccccccCCCccCCCCCCCCC
Q 007906 203 VDIEYAGGVVLDVETRLEVRELDLHKGIVDAN--SE-E-AGA---VGDVSSDLLEGFEYFGKQLNISEGTFDGQDHKDQG 275 (585)
Q Consensus 203 lDV~Y~Gg~~LtIETkLnL~~l~~~~~~~~~n--~~-~-s~S---~g~v~sdl~esie~~G~~f~~s~~s~ds~e~~~~~ 275 (585)
+.+.|.|+|.++++|++||.++...-.++... +. . +.. ....+++..++.|. +.+++ +.++.-+++
T Consensus 576 ~~ms~~~~~~~~~rt~~nL~~l~s~p~v~aek~~~V~r~~at~~~~~~sd~d~~ss~es-----~s~~D--k~~~~~~~~ 648 (795)
T KOG2238|consen 576 VAMSYIGRFLTALRTKMNLPKLQSIPWVAAEKDDWVTRTTATFRDLSSSDSDTPSSKES-----SSSED--KPPRPFGDN 648 (795)
T ss_pred HHHHHHhhHHHHHHhhhcccccccccceeeecccceeeecccchhccccccCCcccccc-----ccccc--cCCCCcccc
Confidence 99999999999999999997664411111100 00 0 000 00011122111110 00000 000000000
Q ss_pred CCCCCCCCCCCCCCCccCCCCchhhh-------------------hhhhcccceeecEEEE-EEEEEEEEEEEEEecCCC
Q 007906 276 DPKPDGLKNNRSTMPVSTSGSRWKSI-------------------LNSIAKQVSQVPISLS-IRVAALRGTLRLHIKPPP 335 (585)
Q Consensus 276 ~~k~d~~~~s~st~~~s~~~sRfk~i-------------------v~sIAe~VS~vPL~Ls-V~L~sLsGtLrV~IpPPP 335 (585)
...+...+.. ....+++-.+ +.+--+.++++||.+. ++|.+++|+|.+||||||
T Consensus 649 -----~~~~~E~t~~-~~q~~kI~~~vd~~~s~s~~~qka~~~~ai~r~i~~~s~tpL~~~~~~vEe~k~~l~~N~p~pp 722 (795)
T KOG2238|consen 649 -----VGSDMEGTVN-IDQKKKIDDSVDERESQSESFQKAAKAEAIRRPIEDVSNTPLVLLDPEVEELKGPLTENIPPPP 722 (795)
T ss_pred -----cccccccccc-ccccchhhhhhhhccccchhhccchhHHhhhcCccccCCCchhccChhhhhhcCCCcCCCCCCc
Confidence 0000000000 0001122111 2222257899999888 999999999999999999
Q ss_pred CCcEEEEeecCCceEEEEEecccceeechhHHHHHHHHHHHHHHHhhcccCCCCcccccCcc
Q 007906 336 SDQLWFGFTSMPDIEFAMESSVGDHKITSGQVALFLINRFKASIRETMVLPNCESVSVPWMS 397 (585)
Q Consensus 336 SDRlWygF~~~P~LeL~ieP~VGeR~It~~~Vt~~IenkLk~~I~e~lVLPNmdDi~IP~M~ 397 (585)
+||+||||+..|...+...|.+|+++++..++..||+.++++.++...|.|||+++++|+|.
T Consensus 723 sd~~~~~~r~~~~~~~k~sps~g~~s~~l~~~~~~ikk~~rq~~q~~~~~p~m~e~~e~v~~ 784 (795)
T KOG2238|consen 723 SDRNWRGFRRAPIEKLKQSPSSGDRSVELDDVDPWIKKKLRQSAQKFDVKPNMDEKNEPVRR 784 (795)
T ss_pred hhhhhhcccccchhhhccCCccCCcccccccccHHHHHHHHhhhhccccCcccchhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999997
No 4
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.18 E-value=7.4e-11 Score=137.22 Aligned_cols=201 Identities=16% Similarity=0.374 Sum_probs=151.5
Q ss_pred chhHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHccCCCCCCCCcEEEEEeecCCCCceeecccccccCCCCcEEEEEe
Q 007906 125 EATLCWNLLIFRLFFDAKINVGVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVWAFEVD 204 (585)
Q Consensus 125 Est~WlNaLL~RLFfD~~rs~~~~~~Ik~KIQkKLskiklP~FI~eI~VteLdLG~s~P~Is~vrvp~lD~~G~wa~ElD 204 (585)
|++.|||.||.++ |-. -++.+...|.+-+...|+. -+|+||+.+.|.+++||..+|.|..||-.+-.+.....+|++
T Consensus 221 ESveWLNtfL~Kf-W~i-~eP~iSqqV~dqvn~~la~-~iPsFI~~l~l~efTLGsk~PrI~~Irsyp~te~dtv~mD~~ 297 (1227)
T COG5038 221 ESVEWLNTFLQKF-WPI-IEPSISQQVVDQVNQQLAE-AIPSFIDALALDEFTLGSKPPRIDGIRSYPSTESDTVVMDVD 297 (1227)
T ss_pred hHHHHHHHHHHhh-eec-cChHHHHHHHHHHHHHHHh-hcchhhhhhhhhhcccCCCCCceeeeeecCCCCCceEEEEee
Confidence 8899999999995 665 4999999999999999998 789999999999999999999999999655444555557777
Q ss_pred EEEeCCeEEEEEEEEeeeeccccccccccCccccccCCCCccccchhhhhcccccccCCCccCCCCCCCCCCCCCCCCCC
Q 007906 205 IEYAGGVVLDVETRLEVRELDLHKGIVDANSEEAGAVGDVSSDLLEGFEYFGKQLNISEGTFDGQDHKDQGDPKPDGLKN 284 (585)
Q Consensus 205 V~Y~Gg~~LtIETkLnL~~l~~~~~~~~~n~~~s~S~g~v~sdl~esie~~G~~f~~s~~s~ds~e~~~~~~~k~d~~~~ 284 (585)
+.+.= .++.+ +.+- ... +. -++|
T Consensus 298 ~sftP---------~d~sD--------------------~t~~---~~r---~~----------------vn~k------ 320 (1227)
T COG5038 298 FSFTP---------HDISD--------------------VTAT---SAR---AS----------------VNPK------ 320 (1227)
T ss_pred eccCc---------cchhh--------------------hhhH---HHh---hh----------------cCcc------
Confidence 66521 11100 0000 000 00 0000
Q ss_pred CCCCCCccCCCCchhhhhhhhcccceeecEEEEEEEEEEEEEEEEEec----CCCCCcEEEEeecCCceEEEEEecccce
Q 007906 285 NRSTMPVSTSGSRWKSILNSIAKQVSQVPISLSIRVAALRGTLRLHIK----PPPSDQLWFGFTSMPDIEFAMESSVGDH 360 (585)
Q Consensus 285 s~st~~~s~~~sRfk~iv~sIAe~VS~vPL~LsV~L~sLsGtLrV~Ip----PPPSDRlWygF~~~P~LeL~ieP~VGeR 360 (585)
-+++-+++......++-+.|+...|.|.|||.+. -|--.-+-|+|.+.|+++|.+.|.=|+.
T Consensus 321 --------------IsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~L~~~~PfiktV~~~Lle~Pe~df~l~Plg~~~ 386 (1227)
T COG5038 321 --------------ISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVELMSKYPFIKTVSFQLLEVPEFDFILVPLGGDF 386 (1227)
T ss_pred --------------eeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEEecCCCcceeEEEEEEecCcceeEEEEEcCCCc
Confidence 0111122222233778888999999999999984 3445679999999999999999987663
Q ss_pred e----echhHHHHHHHHHHHHHHHhhcccCCCCcccccCccCC
Q 007906 361 K----ITSGQVALFLINRFKASIRETMVLPNCESVSVPWMSAE 399 (585)
Q Consensus 361 ~----It~~~Vt~~IenkLk~~I~e~lVLPNmdDi~IP~M~s~ 399 (585)
- +.+|-|..||.+.|...+--.+|-||+-+|.||-|+..
T Consensus 387 ~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~ 429 (1227)
T COG5038 387 FGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAG 429 (1227)
T ss_pred cceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhcc
Confidence 2 46899999999999999999999999999999998887
No 5
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=99.13 E-value=7.2e-11 Score=131.07 Aligned_cols=184 Identities=18% Similarity=0.351 Sum_probs=148.5
Q ss_pred hhHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHccC----CCCCCCCcEEEEEeecCCCCceeecccccccCCCCcE--
Q 007906 126 ATLCWNLLIFRLFFDAKINVGVKSSIQARIQRALSNM----RTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVW-- 199 (585)
Q Consensus 126 st~WlNaLL~RLFfD~~rs~~~~~~Ik~KIQkKLski----klP~FI~eI~VteLdLG~s~P~Is~vrvp~lD~~G~w-- 199 (585)
.|..+|.++..+|.+++.+...+.|+.+|++..++++ ..-..++.|.+.|+.+|..+|-+++.++-.++....+
T Consensus 100 ~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f~~~~sLtvH~i~~~s~~l~ 179 (1051)
T KOG3532|consen 100 SCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKFMTINSLRVHSVENLSEFLK 179 (1051)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhccccccccceEEeecccHHHHHH
Confidence 4566699999999999999999999999999888764 3467899999999999999999999887553321111
Q ss_pred ----------------------EEEEeEEEeCCeEEEEEEEEeeeeccccccccccCccccccCCCCccccchhhhhccc
Q 007906 200 ----------------------AFEVDIEYAGGVVLDVETRLEVRELDLHKGIVDANSEEAGAVGDVSSDLLEGFEYFGK 257 (585)
Q Consensus 200 ----------------------a~ElDV~Y~Gg~~LtIETkLnL~~l~~~~~~~~~n~~~s~S~g~v~sdl~esie~~G~ 257 (585)
.+-+|+.|.|+|+-.|....-
T Consensus 180 ~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~------------------------------------- 222 (1051)
T KOG3532|consen 180 YAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTI------------------------------------- 222 (1051)
T ss_pred hhhhhhhhcccCCcceecccccccccccccCCCcceecCCccc-------------------------------------
Confidence 133344455544422211110
Q ss_pred ccccCCCccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCchhhhhhhhcccceeecEEEEEEEEEEEEEEEEEecCCCCC
Q 007906 258 QLNISEGTFDGQDHKDQGDPKPDGLKNNRSTMPVSTSGSRWKSILNSIAKQVSQVPISLSIRVAALRGTLRLHIKPPPSD 337 (585)
Q Consensus 258 ~f~~s~~s~ds~e~~~~~~~k~d~~~~s~st~~~s~~~sRfk~iv~sIAe~VS~vPL~LsV~L~sLsGtLrV~IpPPPSD 337 (585)
+.---.+.|+|++++|-+++.+-.-|+.
T Consensus 223 ----------------------------------------------------~~kk~S~~iKl~~l~Gm~r~~~~r~py~ 250 (1051)
T KOG3532|consen 223 ----------------------------------------------------IAKKASLSVKITKLTGMVRVILSRQPYH 250 (1051)
T ss_pred ----------------------------------------------------cccCCceeEEEEEeccceeEEEEeccce
Confidence 0111478999999999999999999999
Q ss_pred cEEEEeecCCceEEEEEecccceeechhHHHHHHHHHHHHHHHhhcccCCCCcccccCccCC
Q 007906 338 QLWFGFTSMPDIEFAMESSVGDHKITSGQVALFLINRFKASIRETMVLPNCESVSVPWMSAE 399 (585)
Q Consensus 338 RlWygF~~~P~LeL~ieP~VGeR~It~~~Vt~~IenkLk~~I~e~lVLPNmdDi~IP~M~s~ 399 (585)
+|-++|++.|.++..+++.+-.|++. ..|.+.|++.++..+++.+.+||+.-.++||+++.
T Consensus 251 hw~~sf~G~P~~e~di~s~~qg~qLQ-~~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~~~ 311 (1051)
T KOG3532|consen 251 HWTFSFVGQPIFETDINSQIQGHQLQ-RLIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFPNP 311 (1051)
T ss_pred eeeeeeccCchhhhhhHHHHHHHHHH-HHhHHHHHHHHHHHHHhhccCcchhhhccccccCc
Confidence 99999999999999999999999986 37999999999999999999999999999999765
No 6
>smart00328 BPI1 BPI/LBP/CETP N-terminal domain. Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain
Probab=44.34 E-value=3.4e+02 Score=27.14 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHccCCCCCCCCcE
Q 007906 145 VGVKSSIQARIQRALSNMRTPSYIGEI 171 (585)
Q Consensus 145 ~~~~~~Ik~KIQkKLskiklP~FI~eI 171 (585)
++.++.....||++|.++++|.+-+..
T Consensus 8 ~y~~~~~~~~l~~~l~~i~iPdi~~~~ 34 (225)
T smart00328 8 DYAAQEGALALQKELPKITIPDIRGDF 34 (225)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCcCce
Confidence 356777788899999999999877654
No 7
>PF01273 LBP_BPI_CETP: LBP / BPI / CETP family, N-terminal domain; InterPro: IPR017942 This entry represents the N-terminal domain found in several lipid-binding serum glycoproteins. The N- and C-terminal domains share a similar two-layer alpha/beta structure, but they show little sequence identity. Proteins containing this N-terminal domain include: Bactericidal permeability-increasing protein (BPI) Lipopolysaccharide-binding protein (LBP) Cholesteryl ester transfer protein (CETP) Phospholipid transfer protein (PLTP) Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) Bactericidal permeability-increasing protein (BPI) is a potent antimicrobial protein of 456 residues that binds to and neutralises lipopolysaccharides from the outer membrane of Gram-negative bacteria []. BPI contains two domains that adopt the same structural fold, even though they have little sequence similarity []. Lipopolysaccharide-binding protein (LBP) is an endotoxin-binding protein that is closely related to, and functions in a co-ordinated manner with BPI to facilitate an integrated host response to invading Gram-negative bacteria []. Cholesteryl ester transfer protein (CETP) is a glycoprotein that facilitates the transfer of lipids (cholesteryl esters and triglycerides) between the different lipoproteins that transport them through plasma, including HDL, LDL, VLDL and chylomicrons. These lipoproteins shield the lipids from water by encapsulating them within a coating of polar lipids and proteins []. Phospholipid transfer protein (PLTP) exchanges phospholipids between lipoproteins and remodels high-density lipoproteins (HDLs) []. Palate, lung and nasal epithelium carcinoma-associated protein (PLUNC) is a potential host defensive protein that is secreted from the submucosal gland to the saliva and nasal lavage fluid. PLUNC appears to be a secreted product of neutrophil granules that participates in an aspect of the inflammatory response that contributes to host defence []. Short palate, lung and nasal epithelium clone 1 (SPLUNC1) may bind the lipopolysaccharide of Gram-negative nanobacteria, thereby playing an important role in the host defence of nasopharyngeal epithelium [].; GO: 0008289 lipid binding; PDB: 1EWF_A 1BP1_A 2OBD_A.
Probab=38.35 E-value=2.3e+02 Score=26.24 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCcE
Q 007906 146 GVKSSIQARIQRALSNMRTPSYIGEI 171 (585)
Q Consensus 146 ~~~~~Ik~KIQkKLskiklP~FI~eI 171 (585)
+.++...+.||+.|.++++|.+.++.
T Consensus 4 y~~~~~~~~l~~~l~~~~ipdi~~~~ 29 (164)
T PF01273_consen 4 YANQVGIQILQKELQKIQIPDISGSF 29 (164)
T ss_dssp HHHHHHHHHHHHHHCC-----EEEEE
T ss_pred HHHHHHHHHHHHHhhcCCCCCccccc
Confidence 56677888999999999999887655
No 8
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=22.83 E-value=82 Score=36.72 Aligned_cols=63 Identities=25% Similarity=0.569 Sum_probs=47.6
Q ss_pred HHHHHHHHHHh---hccHHHHHHHHHHHHHHHc--------------cCCCC-CCCCcEEE----EEeecCCCCceeecc
Q 007906 131 NLLIFRLFFDA---KINVGVKSSIQARIQRALS--------------NMRTP-SYIGEIIC----TDIDTGNLPPYVHGM 188 (585)
Q Consensus 131 NaLL~RLFfD~---~rs~~~~~~Ik~KIQkKLs--------------kiklP-~FI~eI~V----teLdLG~s~P~Is~v 188 (585)
|+|..-+|||| +.+..|.+-++..|.+.+. ..+.| +|++.+.+ .||.-|..+|+.+.+
T Consensus 433 ~ll~l~iF~D~r~V~Gd~~L~e~l~~~l~~~a~~~~~~La~la~~a~~~~pPLglfg~l~vek~giDlKk~gifPiv~~i 512 (610)
T COG2905 433 ALLHLSIFFDFRPVAGDEALAEDLKQNLKRRAEGNRRLLARLARNALRFKPPLGLFGQLKVEKDGIDLKKGGIFPIVHGI 512 (610)
T ss_pred HHHHHHHhhccccccCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCCCCcccccceeeeccccchhcCcchhHHHHH
Confidence 89999999997 5577777777777665432 12334 67787777 467789999999999
Q ss_pred ccccc
Q 007906 189 RVLPT 193 (585)
Q Consensus 189 rvp~l 193 (585)
|++.+
T Consensus 513 R~LAL 517 (610)
T COG2905 513 RLLAL 517 (610)
T ss_pred HHHHH
Confidence 99875
No 9
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=19.81 E-value=50 Score=37.45 Aligned_cols=41 Identities=27% Similarity=0.347 Sum_probs=28.2
Q ss_pred HHHHHHhhcccCCCCcccccCccCCCCCCccCCCcCceeecCCC
Q 007906 375 FKASIRETMVLPNCESVSVPWMSAEKDDWVPRNVAPFIWLNHEA 418 (585)
Q Consensus 375 Lk~~I~e~lVLPNmdDi~IP~M~s~~dd~vp~~~~p~iw~~~e~ 418 (585)
|-+.|.+.||+||++| ++-.....|-.||++++-.=..-||
T Consensus 33 FIKRFMel~VlPnI~d---~~~reRa~DELPQS~aGktImTTEP 73 (492)
T PF09547_consen 33 FIKRFMELLVLPNIED---EYERERARDELPQSGAGKTIMTTEP 73 (492)
T ss_pred HHHHHHHHhcCCCCCC---HHHHHHhhhcCCcCCCCCceeccCC
Confidence 3345889999999999 5555555677888877654444443
No 10
>COG3495 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=16.52 E-value=87 Score=30.64 Aligned_cols=15 Identities=33% Similarity=0.802 Sum_probs=12.3
Q ss_pred EEEecCCCCCcEEEE
Q 007906 328 RLHIKPPPSDQLWFG 342 (585)
Q Consensus 328 rV~IpPPPSDRlWyg 342 (585)
+||+||||.++|-|-
T Consensus 102 CiHvPpPPpNQIV~V 116 (166)
T COG3495 102 CIHVPPPPPNQIVLV 116 (166)
T ss_pred eeecCCcCCCeEEEE
Confidence 579999999997664
Done!