Query 007906
Match_columns 585
No_of_seqs 146 out of 321
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 13:25:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007906.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007906hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2obd_A Cholesteryl ester trans 29.2 2.3E+02 0.0078 30.0 10.1 46 146-193 22-67 (476)
2 1peh_A Pepnh1; transferase, nu 26.7 7.7 0.00027 27.9 -1.2 22 562-583 13-34 (35)
3 2k6o_A Cathelicidin antimicrob 19.7 77 0.0026 23.2 2.7 30 554-583 3-32 (37)
4 1ewf_A BPI, bactericidal/perme 11.0 1.2E+03 0.042 23.8 12.7 24 146-169 16-39 (456)
5 3v2c_Y Ribosome-associated inh 8.1 7.8E+02 0.027 21.3 6.4 52 148-216 13-64 (119)
6 3tqm_A Ribosome-associated fac 7.6 6.3E+02 0.022 20.7 5.4 48 147-210 12-59 (96)
7 2dyj_A Ribosome-binding factor 7.6 3.1E+02 0.011 23.1 3.5 36 143-179 4-39 (95)
8 1uiz_A MIF, macrophage migrati 6.9 5E+02 0.017 21.5 4.5 64 335-403 44-107 (115)
9 2os5_A Acemif; macrophage migr 6.6 3.7E+02 0.013 22.6 3.5 65 335-404 44-108 (119)
10 1imu_A Hypothetical protein HI 5.6 6.9E+02 0.024 20.9 4.7 17 144-161 13-29 (107)
No 1
>2obd_A Cholesteryl ester transfer protein; lipid transfer protein, lipid transport; HET: NDG FU4 2OB PCW EPE 1PE PG4; 2.10A {Homo sapiens}
Probab=29.24 E-value=2.3e+02 Score=30.03 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCCcEEEEEeecCCCCceeeccccccc
Q 007906 146 GVKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRVLPT 193 (585)
Q Consensus 146 ~~~~~Ik~KIQkKLskiklP~FI~eI~VteLdLG~s~P~Is~vrvp~l 193 (585)
++++.....||+.|.++.+|.+-+++.+.- +|.-.=-|+++++-.+
T Consensus 22 y~~~~~~~~lq~~l~~i~iPdi~g~~~i~~--~G~~~y~ls~ikI~~~ 67 (476)
T 2obd_A 22 VLNHETAKVIQTAFQRASYPDITGEKAMML--LGQVKYGLHNIQISHL 67 (476)
T ss_dssp HHGGGHHHHHHHHHHHCCCCCEEEEEEETT--TEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCceeccc--cceEEEEEEEEEEEEE
Confidence 355566788999999999999876655431 1211112666666544
No 2
>1peh_A Pepnh1; transferase, nucleotidyltransferase, repeat, phospholipid biosynthesis, membrane, phosphorylation; NMR {Rattus norvegicus} SCOP: j.14.1.1
Probab=26.66 E-value=7.7 Score=27.87 Aligned_cols=22 Identities=32% Similarity=0.605 Sum_probs=16.8
Q ss_pred HHHHHHHHhHHHhhhhhhhhcc
Q 007906 562 EKLEEKRRHIEEKGRHIVEKMR 583 (585)
Q Consensus 562 ~~~~~~~~~~~~~~r~iv~kmr 583 (585)
+|..+|-|.+|||+.++|-+.-
T Consensus 13 Dk~K~kvk~VEeksK~~V~~vE 34 (35)
T 1peh_A 13 DKVKKKVKDVEEKSKEWVQKVE 34 (35)
T ss_dssp TGGGGGTTGGGTTTHHHHHHHC
T ss_pred HHHHHHHHhHHHHHHHHHHHcc
Confidence 3445667899999999998754
No 3
>2k6o_A Cathelicidin antimicrobial peptide; human HOST defense peptide, human cathelicidin, LL-37, bacterial membrane targeting, antibiotic; NMR {Homo sapiens} PDB: 2lmf_A
Probab=19.66 E-value=77 Score=23.22 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=24.2
Q ss_pred chhhhhhhHHHHHHHHhHHHhhhhhhhhcc
Q 007906 554 LDLGKNMKEKLEEKRRHIEEKGRHIVEKMR 583 (585)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~r~iv~kmr 583 (585)
=||=+|.|+|+.|+-+.|..|-+..+.+.+
T Consensus 3 g~~lrk~geKig~~~kkIgQkIKdFf~~l~ 32 (37)
T 2k6o_A 3 GDFFRKSKEKIGKEFKRIVQRIKDFLRNLV 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 366788999999999999888888777654
No 4
>1ewf_A BPI, bactericidal/permeability-increasing protein; lipid-binding, lipopolysaccharide-binding, antibiotic; HET: PC1; 1.70A {Homo sapiens} SCOP: d.83.1.1 d.83.1.1 PDB: 1bp1_A*
Probab=11.03 E-value=1.2e+03 Score=23.81 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHccCCCCCCCC
Q 007906 146 GVKSSIQARIQRALSNMRTPSYIG 169 (585)
Q Consensus 146 ~~~~~Ik~KIQkKLskiklP~FI~ 169 (585)
++++.....||+.|.++++|.+-+
T Consensus 16 y~~~~~~~~l~~~l~~~~iPdi~~ 39 (456)
T 1ewf_A 16 YASQQGTAALQKELKRIKIPDYSD 39 (456)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCEEE
T ss_pred HHHHHHHHHHHHHhhcCCCCCccC
Confidence 467788889999999999998643
No 5
>3v2c_Y Ribosome-associated inhibitor A; RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome-inhibitor; 2.70A {Escherichia coli k-12} PDB: 3v2e_Y 1n3g_A 1l4s_A 1voq_a 1vos_a 1vov_a 1vox_a 1voz_a
Probab=8.12 E-value=7.8e+02 Score=21.33 Aligned_cols=52 Identities=15% Similarity=0.225 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHccCCCCCCCCcEEEEEeecCCCCceeecccccccCCCCcEEEEEeEEEeCCeEEEEE
Q 007906 148 KSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVWAFEVDIEYAGGVVLDVE 216 (585)
Q Consensus 148 ~~~Ik~KIQkKLskiklP~FI~eI~VteLdLG~s~P~Is~vrvp~lD~~G~wa~ElDV~Y~Gg~~LtIE 216 (585)
.+.+++.|++||++ +-.|.+.|.=.+|.|-.. .+...+|+.+...|+ .|..+
T Consensus 13 t~alr~~ve~Kl~k--L~k~~d~i~~~~V~ls~e--------------~~~~~veiti~~~G~-~l~ae 64 (119)
T 3v2c_Y 13 TPAIRQHVADRLAK--LEKWQTHLINPHIILSKE--------------PQGFVADATINTPNG-VLVAS 64 (119)
T ss_dssp CHHHHHHHHHHGGG--GGGGCCCCEEEEEEEECC--------------SSCEEEEEEEEETTE-EEEEE
T ss_pred CHHHHHHHHHHHHH--HHHhcCCCeEEEEEEEEe--------------CCCEEEEEEEEcCCc-eEEEE
Confidence 34555566666664 455666665555555432 124568888888876 44443
No 6
>3tqm_A Ribosome-associated factor Y; protein synthesis, protein binding; 2.45A {Coxiella burnetii}
Probab=7.63 E-value=6.3e+02 Score=20.66 Aligned_cols=48 Identities=10% Similarity=0.102 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCcEEEEEeecCCCCceeecccccccCCCCcEEEEEeEEEeCC
Q 007906 147 VKSSIQARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNEVWAFEVDIEYAGG 210 (585)
Q Consensus 147 ~~~~Ik~KIQkKLskiklP~FI~eI~VteLdLG~s~P~Is~vrvp~lD~~G~wa~ElDV~Y~Gg 210 (585)
+.+.+++.|++||++ +-.|.+.|.=.++.|-.. .+...+|+.+...|+
T Consensus 12 ~t~al~~~v~~kl~k--L~k~~~~i~~~~V~l~~e--------------~~~~~~ei~i~~~g~ 59 (96)
T 3tqm_A 12 ISPALRELTEKKLHR--IQPCRDEISNIHIIFHIN--------------KLKKIVDANVKLPGS 59 (96)
T ss_dssp CCHHHHHHHHHHHTT--CCSSGGGCCEEEEEEEEE--------------TTEEEEEEEEEETTE
T ss_pred CCHHHHHHHHHHHHH--HHHhcCCCeEEEEEEEEe--------------CCceEEEEEEEeCCc
Confidence 345566677777775 556766654444444221 124557777777765
No 7
>2dyj_A Ribosome-binding factor A; 16S rRNA processing, 17S RNA, KH domain; 1.84A {Thermus thermophilus} SCOP: d.52.7.1 PDB: 2r1c_A
Probab=7.61 E-value=3.1e+02 Score=23.05 Aligned_cols=36 Identities=3% Similarity=0.135 Sum_probs=22.7
Q ss_pred ccHHHHHHHHHHHHHHHccCCCCCCCCcEEEEEeecC
Q 007906 143 INVGVKSSIQARIQRALSNMRTPSYIGEIICTDIDTG 179 (585)
Q Consensus 143 rs~~~~~~Ik~KIQkKLskiklP~FI~eI~VteLdLG 179 (585)
|...+.+.|++.|...|..++-|.. +-++||++.+-
T Consensus 4 R~~Rv~~~i~~~ls~il~ei~Dprl-~~vtVt~V~vs 39 (95)
T 2dyj_A 4 GKAHLEAQLKRALAEEIQALEDPRL-FLLTVEAVRLS 39 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCGGG-TTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccc-CcEEEEEEEEC
Confidence 4455667777777777755665543 56677766553
No 8
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=6.87 E-value=5e+02 Score=21.53 Aligned_cols=64 Identities=13% Similarity=0.170 Sum_probs=40.9
Q ss_pred CCCcEEEEeecCCceEEEEEecccceeechhHHHHHHHHHHHHHHHhhcccCCCCcccccCccCCCCCC
Q 007906 335 PSDQLWFGFTSMPDIEFAMESSVGDHKITSGQVALFLINRFKASIRETMVLPNCESVSVPWMSAEKDDW 403 (585)
Q Consensus 335 PSDRlWygF~~~P~LeL~ieP~VGeR~It~~~Vt~~IenkLk~~I~e~lVLPNmdDi~IP~M~s~~dd~ 403 (585)
|.+.++|+-+.+|-.-++|. .+|+|.. .-..-+...|-+.+.+.+=.|. ++++|=+-....++|
T Consensus 44 ~~~~~~~~g~~~~~~~v~i~-~~~g~~~---eqk~~l~~~i~~~l~~~lgi~~-~~v~I~~~e~~~~~w 107 (115)
T 1uiz_A 44 PDQIMSFGDSTDPCAVCSLC-SIGKIGG---PQNKSYTKLLCDILTKQLNIPA-NRVYINYYDLNAANV 107 (115)
T ss_dssp CSCEEEETTBCSSCEEEEEE-ESSCCSH---HHHHHHHHHHHHHHHHHHCCCG-GGEEEEEEECCGGGE
T ss_pred CCcceEECCCCCCeEEEEEE-EecCCCH---HHHHHHHHHHHHHHHHHhCcCc-ceEEEEEEECCHHHe
Confidence 35688898899999988888 4676642 2233344444555555544443 566777666666677
No 9
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=6.56 E-value=3.7e+02 Score=22.63 Aligned_cols=65 Identities=14% Similarity=0.219 Sum_probs=42.2
Q ss_pred CCCcEEEEeecCCceEEEEEecccceeechhHHHHHHHHHHHHHHHhhcccCCCCcccccCccCCCCCCc
Q 007906 335 PSDQLWFGFTSMPDIEFAMESSVGDHKITSGQVALFLINRFKASIRETMVLPNCESVSVPWMSAEKDDWV 404 (585)
Q Consensus 335 PSDRlWygF~~~P~LeL~ieP~VGeR~It~~~Vt~~IenkLk~~I~e~lVLPNmdDi~IP~M~s~~dd~v 404 (585)
|.+.++|+-..+|-.-++|. .+|+|.. .-..-+...|-+.+.+.+=.|. ++++|=+-....++|-
T Consensus 44 ~~~~~~~~g~~~~~~~i~I~-~~~g~~~---eqk~~l~~~i~~~l~~~lgi~~-~~v~I~~~e~~~~~wg 108 (119)
T 2os5_A 44 AGQRITHGASRNPVAVIKVE-SIGALSA---DDNIRHTQKITQFCQDTLKLPK-DKVIITYFDLQPIHVG 108 (119)
T ss_dssp CSCCCCBTTBCSSCEEEEEE-ESSCCCH---HHHHHHHHHHHHHHHHHHCCCG-GGEEEEEEECCGGGCE
T ss_pred CCccEEEcCCCCCeEEEEEE-EecCCCH---HHHHHHHHHHHHHHHHHhCcCc-ccEEEEEEECCHHHee
Confidence 45688899899999989998 4676653 2233344445555555554443 5677777777777873
No 10
>1imu_A Hypothetical protein HI0257; dsRNA binding protein, proteome, solution structure, ribosome, structure 2 function project, S2F; NMR {Haemophilus influenzae} SCOP: d.204.1.1
Probab=5.59 E-value=6.9e+02 Score=20.94 Aligned_cols=17 Identities=12% Similarity=0.485 Sum_probs=11.7
Q ss_pred cHHHHHHHHHHHHHHHcc
Q 007906 144 NVGVKSSIQARIQRALSN 161 (585)
Q Consensus 144 s~~~~~~Ik~KIQkKLsk 161 (585)
++.++++|.+||.+ |.+
T Consensus 13 t~alr~~v~~kl~k-L~r 29 (107)
T 1imu_A 13 TPAIREHLEERLAK-LGK 29 (107)
T ss_dssp CHHHHHHHHHHHHH-HHT
T ss_pred CHHHHHHHHHHHHH-HHH
Confidence 56677777777776 654
Done!