Query 007906
Match_columns 585
No_of_seqs 146 out of 321
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 13:25:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007906.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007906hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ewfa1 d.83.1.1 (A:1-217) Bac 51.6 75 0.0055 27.7 12.6 23 146-168 16-38 (217)
2 d1josa_ d.52.7.1 (A:) Ribosome 7.9 2.3E+02 0.017 21.8 4.8 35 146-181 4-39 (100)
3 d1ewfa1 d.83.1.1 (A:1-217) Bac 7.1 2E+02 0.015 24.7 4.6 53 124-176 147-207 (217)
4 d1mkma2 d.110.2.2 (A:76-246) T 7.0 1.9E+02 0.014 23.6 4.1 60 133-199 59-133 (171)
5 d2f66c1 a.2.17.3 (C:142-206) V 6.6 1.4E+02 0.011 22.2 2.7 23 561-583 10-32 (65)
6 d2ia9a1 d.366.1.1 (A:1-92) Put 6.3 2.1E+02 0.015 22.5 3.8 30 185-214 3-32 (92)
7 d1pcfa_ d.18.1.1 (A:) Transcri 6.3 1.4E+02 0.01 22.2 2.5 21 316-342 9-29 (66)
8 d1tf1a_ d.110.2.2 (A:) Transcr 6.2 2.1E+02 0.015 23.6 4.0 61 132-199 69-144 (184)
9 d1odma_ b.82.2.1 (A:) Isopenic 6.1 91 0.0066 28.4 1.6 49 334-382 273-326 (329)
10 d2i9xa1 d.366.1.1 (A:1-84) Put 5.1 2.8E+02 0.021 21.3 3.8 29 185-213 3-31 (84)
No 1
>d1ewfa1 d.83.1.1 (A:1-217) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.57 E-value=75 Score=27.73 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHccCCCCCCC
Q 007906 146 GVKSSIQARIQRALSNMRTPSYI 168 (585)
Q Consensus 146 ~~~~~Ik~KIQkKLskiklP~FI 168 (585)
++++.....+|+.|.++++|.+-
T Consensus 16 y~~~~~~~~l~~~l~~i~iPdi~ 38 (217)
T d1ewfa1 16 YASQQGTAALQKELKRIKIPDYS 38 (217)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCEE
T ss_pred HHHHHHHHHHHHHhhcCCCCCcc
Confidence 57788889999999999999874
No 2
>d1josa_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Haemophilus influenzae [TaxId: 727]}
Probab=7.91 E-value=2.3e+02 Score=21.76 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHcc-CCCCCCCCcEEEEEeecCCC
Q 007906 146 GVKSSIQARIQRALSN-MRTPSYIGEIICTDIDTGNL 181 (585)
Q Consensus 146 ~~~~~Ik~KIQkKLsk-iklP~FI~eI~VteLdLG~s 181 (585)
.+.+.|++.|-..|.+ ++-|.+ +-|+|+++++-..
T Consensus 4 rv~~~i~~~is~il~~~i~d~~l-~~vtIt~V~~S~D 39 (100)
T d1josa_ 4 RVAQEIQKEIAVILQREVKDPRI-GMVTVSDVEVSSD 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHCCCTTT-CCEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHhccCccc-CceEEEEEEEcCC
Confidence 3455555555555543 665654 5688888876443
No 3
>d1ewfa1 d.83.1.1 (A:1-217) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.09 E-value=2e+02 Score=24.75 Aligned_cols=53 Identities=9% Similarity=0.078 Sum_probs=24.3
Q ss_pred Cch-hHHH-HHHHHHHHHHhhc--cHHHHHHH----HHHHHHHHccCCCCCCCCcEEEEEe
Q 007906 124 DEA-TLCW-NLLIFRLFFDAKI--NVGVKSSI----QARIQRALSNMRTPSYIGEIICTDI 176 (585)
Q Consensus 124 dEs-t~Wl-NaLL~RLFfD~~r--s~~~~~~I----k~KIQkKLskiklP~FI~eI~VteL 176 (585)
..+ .-|+ |++...+-..++. +..++..| ..++++.|..+...--+++..-.|+
T Consensus 147 ~gg~~swl~n~f~~~i~~~ir~~l~~~iC~~i~~~i~~~ln~~L~~lp~~~~id~~~~idy 207 (217)
T d1ewfa1 147 SKSKVGWLIQLFHKKIESALRNKMNSQVCEKVTNSVSSELQPYFQTLPVMTKIDSVAGINY 207 (217)
T ss_dssp SCGGGHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTSCSEEECSSSCEEEC
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeeeecCCceEEEE
Confidence 344 5787 7766655433332 12344444 4444455554433333344333333
No 4
>d1mkma2 d.110.2.2 (A:76-246) Transcriptional regulator IclR, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=7.04 E-value=1.9e+02 Score=23.60 Aligned_cols=60 Identities=15% Similarity=0.079 Sum_probs=40.1
Q ss_pred HHHHHHHHhhccHHHHHHH---------------HHHHHHHHccCCCCCCCCcEEEEEeecCCCCceeecccccccCCCC
Q 007906 133 LIFRLFFDAKINVGVKSSI---------------QARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMNE 197 (585)
Q Consensus 133 LL~RLFfD~~rs~~~~~~I---------------k~KIQkKLskiklP~FI~eI~VteLdLG~s~P~Is~vrvp~lD~~G 197 (585)
-.||+|..++.+..+..++ .+.+.+.|..++.-+| -++.|...|-+..+-+|-.|.+|
T Consensus 59 A~Gk~lLA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ir~~G~-------a~~~~e~~~gv~~iA~Pi~~~~g 131 (171)
T d1mkma2 59 ASGKSILAFVPEKELKEYLKIVELKPKTPNTITNPRVLKRELEKIRKRGY-------AVDNEENEIGIMCVGVPIFDHNG 131 (171)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHCCCCCSSTTCCCCHHHHHHHHHHHHHHSS-------EEEESSSSTTEEEEEEEEECTTS
T ss_pred cchhhhhhcCCHHHHHHHhhhhccccCCCCCcccHHHHHHHHHHHHhhhe-------eeccccccccccEEEEEEECCCC
Confidence 3477877777766666554 2345556665554444 36778888889999888777777
Q ss_pred cE
Q 007906 198 VW 199 (585)
Q Consensus 198 ~w 199 (585)
..
T Consensus 132 ~~ 133 (171)
T d1mkma2 132 YP 133 (171)
T ss_dssp CE
T ss_pred CE
Confidence 55
No 5
>d2f66c1 a.2.17.3 (C:142-206) Vacuolar protein sorting-associated protein 37, VPS37 (SRN2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.63 E-value=1.4e+02 Score=22.21 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=16.2
Q ss_pred hHHHHHHHHhHHHhhhhhhhhcc
Q 007906 561 KEKLEEKRRHIEEKGRHIVEKMR 583 (585)
Q Consensus 561 ~~~~~~~~~~~~~~~r~iv~kmr 583 (585)
..|||.--+..+|++|+|++-.|
T Consensus 10 k~kL~~~~~~ld~~s~~l~~~~r 32 (65)
T d2f66c1 10 KKKLEQNTKKLDEESSQLETTTR 32 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 34677777777888888776554
No 6
>d2ia9a1 d.366.1.1 (A:1-92) Putative septation protein SpoVG {Bacillus subtilis [TaxId: 1423]}
Probab=6.34 E-value=2.1e+02 Score=22.49 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=23.7
Q ss_pred eecccccccCCCCcEEEEEeEEEeCCeEEE
Q 007906 185 VHGMRVLPTDMNEVWAFEVDIEYAGGVVLD 214 (585)
Q Consensus 185 Is~vrvp~lD~~G~wa~ElDV~Y~Gg~~Lt 214 (585)
|+.+|+.+++..|.+..-++|.+.|.|.+.
T Consensus 3 ITdVrI~~i~~~g~lkA~asvt~d~~fvI~ 32 (92)
T d2ia9a1 3 VTDVRLRRVNTDGRMRAIASITLDHEFVVH 32 (92)
T ss_dssp EEEEEEEECCSSSSEEEEEEEEETTTEEEE
T ss_pred eEEEEEEEecCCCCEEEEEEEEECCEEEEe
Confidence 667788888878877777899999988764
No 7
>d1pcfa_ d.18.1.1 (A:) Transcriptional coactivator PC4 C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.27 E-value=1.4e+02 Score=22.19 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=18.8
Q ss_pred EEEEEEEEEEEEEEEecCCCCCcEEEE
Q 007906 316 LSIRVAALRGTLRLHIKPPPSDQLWFG 342 (585)
Q Consensus 316 LsV~L~sLsGtLrV~IpPPPSDRlWyg 342 (585)
-.|+|..++|...|+| |-||.
T Consensus 9 rrvtV~~FkG~~~vdI------ReyY~ 29 (66)
T d1pcfa_ 9 RYVSVRDFKGKVLIDI------REYWM 29 (66)
T ss_dssp EEEEEEEETTEEEEEE------EEEEE
T ss_pred EEEEEEEECCcEEEEE------EEEEE
Confidence 4789999999999999 99994
No 8
>d1tf1a_ d.110.2.2 (A:) Transcriptional regulator AllR, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=6.16 E-value=2.1e+02 Score=23.61 Aligned_cols=61 Identities=11% Similarity=-0.013 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhccHHHHHHHH---------------HHHHHHHccCCCCCCCCcEEEEEeecCCCCceeecccccccCCC
Q 007906 132 LLIFRLFFDAKINVGVKSSIQ---------------ARIQRALSNMRTPSYIGEIICTDIDTGNLPPYVHGMRVLPTDMN 196 (585)
Q Consensus 132 aLL~RLFfD~~rs~~~~~~Ik---------------~KIQkKLskiklP~FI~eI~VteLdLG~s~P~Is~vrvp~lD~~ 196 (585)
.-.||+|..++.+..+..++. +.+.+.|..++.-+| -++.|...|-+..+-+|-.|.+
T Consensus 69 tA~Gk~lLA~l~~~e~~~~l~~~~~~~~t~~~~~~~~~l~~~l~~ir~~Gy-------a~~~~e~~~gv~~iA~PV~~~~ 141 (184)
T d1tf1a_ 69 SGAGKALLYPLAEEELMSIILQTGLQQFTPTTLVDMPTLLKDLEQARELGY-------TVDKEEHVVGLNCIASAIYDDV 141 (184)
T ss_dssp SHHHHHHHTTSCHHHHHHHHHHHCCCCCSTTCCCSHHHHHHHHHHHHHHTC-------EEEESSSSTTEEEEEEEEECTT
T ss_pred CcceeechhcCCHHHHHHHhhhccccccCccccCCHHHHHHHHHHHhhccE-------EEecCccccCceEEEEEEECCC
Confidence 345788887777766666553 235555555554455 3678899999999999888877
Q ss_pred CcE
Q 007906 197 EVW 199 (585)
Q Consensus 197 G~w 199 (585)
|..
T Consensus 142 g~~ 144 (184)
T d1tf1a_ 142 GSV 144 (184)
T ss_dssp SCE
T ss_pred CCE
Confidence 765
No 9
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]}
Probab=6.08 E-value=91 Score=28.36 Aligned_cols=49 Identities=10% Similarity=0.051 Sum_probs=35.0
Q ss_pred CCCCcEEEEeecCCceEEEEEecc---cceeechh--HHHHHHHHHHHHHHHhh
Q 007906 334 PPSDQLWFGFTSMPDIEFAMESSV---GDHKITSG--QVALFLINRFKASIRET 382 (585)
Q Consensus 334 PPSDRlWygF~~~P~LeL~ieP~V---GeR~It~~--~Vt~~IenkLk~~I~e~ 382 (585)
|+.+|+.+.|--.|..+..|+|.- .+..-.+. .-.+||.++|.+.+++.
T Consensus 273 ~~~~R~Si~~F~~P~~d~~i~pl~~~~~~~~~~~~~~~~~e~l~~~l~~~~~~~ 326 (329)
T d1odma_ 273 VNAERQSLPFFVNLGYDSVIDPFDPREPNGKSDREPLSYGDYLQNGLVSLINKN 326 (329)
T ss_dssp CCSCEEEEEEEECCCTTCBCCCCCTTSTTCCCSSCCCBHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEECCCCCCEEeCCcccCCCCcccCCCccHHHHHHHHHHHHHHHh
Confidence 567899999999999998888752 11111111 34799999999988753
No 10
>d2i9xa1 d.366.1.1 (A:1-84) Putative septation protein SpoVG {Staphylococcus epidermidis [TaxId: 1282]}
Probab=5.05 E-value=2.8e+02 Score=21.30 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=22.3
Q ss_pred eecccccccCCCCcEEEEEeEEEeCCeEE
Q 007906 185 VHGMRVLPTDMNEVWAFEVDIEYAGGVVL 213 (585)
Q Consensus 185 Is~vrvp~lD~~G~wa~ElDV~Y~Gg~~L 213 (585)
|+.+|+.++...|.+..-++|...|.|.+
T Consensus 3 ITdVrI~~i~~~gklkA~asvt~d~~fvI 31 (84)
T d2i9xa1 3 VTDVRLRKIQTDGRMKALVSITLDEAFVI 31 (84)
T ss_dssp EEEEEEEECCSSSSEEEEEEEEETTTEEE
T ss_pred eEEEEEEEecCCCCEEEEEEEEECCEEEE
Confidence 56777777777777767788998888765
Done!