Query 007907
Match_columns 585
No_of_seqs 98 out of 109
Neff 3.6
Searched_HMMs 46136
Date Thu Mar 28 16:56:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007907.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007907hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09731 Mitofilin: Mitochondr 100.0 1.2E-49 2.5E-54 428.5 38.9 305 268-582 208-535 (582)
2 KOG1854 Mitochondrial inner me 100.0 3.3E-27 7.1E-32 256.6 28.2 226 352-581 347-601 (657)
3 COG4223 Uncharacterized protei 98.8 5.6E-08 1.2E-12 101.8 12.3 148 419-579 223-370 (422)
4 PF09731 Mitofilin: Mitochondr 96.9 0.38 8.3E-06 53.5 24.5 74 334-407 287-362 (582)
5 PF06705 SF-assemblin: SF-asse 96.2 1.6 3.4E-05 44.0 23.3 75 415-489 131-212 (247)
6 PF06705 SF-assemblin: SF-asse 96.0 2.1 4.6E-05 43.1 23.6 27 417-443 162-188 (247)
7 PF12037 DUF3523: Domain of un 93.9 9.9 0.00021 40.1 22.8 58 415-472 199-257 (276)
8 KOG1854 Mitochondrial inner me 92.6 10 0.00023 44.0 19.3 94 363-465 388-483 (657)
9 PF12128 DUF3584: Protein of u 92.3 33 0.00072 42.3 24.3 27 508-534 761-789 (1201)
10 KOG0971 Microtubule-associated 92.2 24 0.00052 42.9 21.7 62 362-425 315-388 (1243)
11 PRK13428 F0F1 ATP synthase sub 90.7 30 0.00065 38.3 19.9 23 329-351 43-65 (445)
12 PF11068 YlqD: YlqD protein; 89.6 5.4 0.00012 37.7 11.3 32 414-445 58-89 (131)
13 PTZ00121 MAEBL; Provisional 89.5 62 0.0013 41.5 22.4 34 429-462 1259-1292(2084)
14 KOG2072 Translation initiation 89.4 29 0.00063 41.7 19.0 70 318-388 708-782 (988)
15 PF12128 DUF3584: Protein of u 89.1 67 0.0014 39.8 27.3 36 546-581 937-972 (1201)
16 PRK00409 recombination and DNA 88.2 21 0.00045 42.3 17.2 39 513-551 710-752 (782)
17 KOG2391 Vacuolar sorting prote 88.2 20 0.00044 39.1 15.6 34 458-491 307-345 (365)
18 KOG1029 Endocytic adaptor prot 88.1 54 0.0012 39.5 19.9 9 322-330 323-331 (1118)
19 PRK08476 F0F1 ATP synthase sub 87.5 25 0.00054 32.9 15.6 25 328-352 48-72 (141)
20 KOG1029 Endocytic adaptor prot 87.3 52 0.0011 39.6 19.2 18 306-323 242-260 (1118)
21 PF12072 DUF3552: Domain of un 87.2 33 0.00071 34.0 15.9 21 335-356 60-80 (201)
22 PRK06568 F0F1 ATP synthase sub 86.9 19 0.00041 34.9 13.4 23 329-351 46-68 (154)
23 PRK09174 F0F1 ATP synthase sub 86.9 35 0.00077 34.1 15.7 26 329-354 95-120 (204)
24 PRK09174 F0F1 ATP synthase sub 85.8 41 0.00089 33.7 16.3 17 418-434 155-171 (204)
25 PLN03229 acetyl-coenzyme A car 85.3 38 0.00082 40.3 17.0 40 331-372 458-498 (762)
26 PRK12704 phosphodiesterase; Pr 84.1 83 0.0018 35.8 18.7 7 543-549 334-340 (520)
27 KOG1265 Phospholipase C [Lipid 83.2 58 0.0013 39.8 17.3 34 30-67 737-770 (1189)
28 PF05010 TACC: Transforming ac 82.6 60 0.0013 33.0 23.7 160 307-473 42-205 (207)
29 PRK13460 F0F1 ATP synthase sub 82.4 48 0.001 31.8 15.7 26 327-352 56-81 (173)
30 PF10146 zf-C4H2: Zinc finger- 82.3 58 0.0013 33.5 15.2 63 417-489 40-103 (230)
31 CHL00019 atpF ATP synthase CF0 82.1 51 0.0011 31.9 15.4 24 329-352 66-89 (184)
32 PRK13455 F0F1 ATP synthase sub 82.1 51 0.0011 31.9 19.0 22 329-350 69-90 (184)
33 KOG0933 Structural maintenance 81.7 1.5E+02 0.0032 36.9 25.5 63 497-566 1011-1109(1174)
34 PRK13454 F0F1 ATP synthase sub 81.5 55 0.0012 31.9 16.5 22 329-350 73-94 (181)
35 PRK12705 hypothetical protein; 81.4 87 0.0019 35.8 17.5 41 335-376 59-100 (508)
36 KOG0612 Rho-associated, coiled 81.0 1.7E+02 0.0036 37.1 22.1 75 409-484 697-780 (1317)
37 KOG0579 Ste20-like serine/thre 80.4 1.4E+02 0.0031 36.0 23.5 76 338-413 811-887 (1187)
38 PRK14475 F0F1 ATP synthase sub 80.4 56 0.0012 31.3 17.1 24 329-352 52-75 (167)
39 COG0711 AtpF F0F1-type ATP syn 80.4 56 0.0012 31.3 18.9 26 327-352 46-71 (161)
40 TIGR01069 mutS2 MutS2 family p 79.2 67 0.0015 38.2 16.4 36 513-548 699-738 (771)
41 PRK06569 F0F1 ATP synthase sub 79.2 66 0.0014 31.4 13.9 47 330-376 53-100 (155)
42 PRK06231 F0F1 ATP synthase sub 79.1 73 0.0016 31.9 15.7 27 327-353 88-114 (205)
43 TIGR03321 alt_F1F0_F0_B altern 78.9 78 0.0017 32.1 15.3 18 333-350 51-68 (246)
44 PF10498 IFT57: Intra-flagella 78.9 73 0.0016 34.8 15.3 108 332-443 238-355 (359)
45 KOG0976 Rho/Rac1-interacting s 78.8 1.7E+02 0.0036 35.8 21.2 36 453-488 455-490 (1265)
46 PRK13453 F0F1 ATP synthase sub 78.7 65 0.0014 31.0 15.7 26 329-354 60-85 (173)
47 KOG0994 Extracellular matrix g 77.8 2.1E+02 0.0045 36.4 22.7 15 311-325 1565-1579(1758)
48 KOG0161 Myosin class II heavy 77.7 2.5E+02 0.0054 37.2 22.7 128 360-487 1030-1184(1930)
49 PRK06231 F0F1 ATP synthase sub 77.1 83 0.0018 31.4 17.5 16 335-350 75-90 (205)
50 TIGR03319 YmdA_YtgF conserved 77.0 1.4E+02 0.003 34.0 18.6 8 478-485 254-261 (514)
51 PF00038 Filament: Intermediat 76.9 93 0.002 31.9 22.9 16 477-492 293-308 (312)
52 KOG1899 LAR transmembrane tyro 76.9 1.4E+02 0.0031 35.4 17.4 106 409-534 211-316 (861)
53 PF07111 HCR: Alpha helical co 76.6 92 0.002 37.1 16.0 64 316-379 542-608 (739)
54 PF06637 PV-1: PV-1 protein (P 76.4 1.4E+02 0.003 33.5 16.5 38 418-455 351-388 (442)
55 KOG0161 Myosin class II heavy 76.3 2.7E+02 0.0059 36.9 24.0 35 321-355 957-991 (1930)
56 KOG1265 Phospholipase C [Lipid 76.0 2.1E+02 0.0045 35.4 20.0 23 435-457 1133-1155(1189)
57 TIGR01069 mutS2 MutS2 family p 75.6 1.6E+02 0.0034 35.3 18.0 7 317-323 485-491 (771)
58 PRK13454 F0F1 ATP synthase sub 75.4 84 0.0018 30.6 15.4 22 417-438 132-153 (181)
59 PRK00106 hypothetical protein; 75.0 1.5E+02 0.0031 34.3 16.9 8 478-485 275-282 (535)
60 PF12037 DUF3523: Domain of un 74.6 1.2E+02 0.0027 32.2 19.5 77 294-376 39-122 (276)
61 CHL00118 atpG ATP synthase CF0 73.9 82 0.0018 29.8 17.5 21 330-350 65-85 (156)
62 KOG0933 Structural maintenance 73.4 2.5E+02 0.0054 35.1 24.1 21 511-531 901-921 (1174)
63 PF15556 Zwint: ZW10 interacto 73.3 1.2E+02 0.0026 31.5 21.4 140 311-459 31-184 (252)
64 PRK14474 F0F1 ATP synthase sub 72.5 1.2E+02 0.0026 31.2 16.2 22 329-350 47-68 (250)
65 COG4487 Uncharacterized protei 72.2 1.8E+02 0.0039 33.0 18.7 74 370-443 113-188 (438)
66 PRK14473 F0F1 ATP synthase sub 71.5 93 0.002 29.4 15.8 26 328-353 49-74 (164)
67 KOG0977 Nuclear envelope prote 69.7 2.2E+02 0.0048 33.1 17.7 29 322-350 107-135 (546)
68 PRK08476 F0F1 ATP synthase sub 69.5 1E+02 0.0022 29.0 17.3 19 429-447 117-135 (141)
69 TIGR01541 tape_meas_lam_C phag 69.4 1.7E+02 0.0037 31.6 20.3 14 438-451 149-162 (332)
70 KOG0163 Myosin class VI heavy 67.4 1.8E+02 0.004 35.4 15.7 32 118-149 526-563 (1259)
71 PF04111 APG6: Autophagy prote 67.2 1.3E+02 0.0028 32.1 13.6 14 328-341 23-36 (314)
72 KOG0742 AAA+-type ATPase [Post 67.1 2.4E+02 0.0052 32.5 23.4 52 415-466 243-295 (630)
73 cd07686 F-BAR_Fer The F-BAR (F 66.9 1.6E+02 0.0035 30.4 17.8 127 312-449 18-146 (234)
74 PRK13428 F0F1 ATP synthase sub 66.9 2.1E+02 0.0047 31.8 16.3 92 315-406 38-132 (445)
75 PF02841 GBP_C: Guanylate-bind 66.9 1.7E+02 0.0036 30.5 16.4 23 64-86 1-23 (297)
76 PRK00409 recombination and DNA 66.8 2.8E+02 0.0061 33.2 18.1 6 317-322 490-495 (782)
77 PRK07352 F0F1 ATP synthase sub 66.4 1.3E+02 0.0027 29.0 15.5 21 330-350 62-82 (174)
78 PF10168 Nup88: Nuclear pore c 66.1 2.4E+02 0.0052 33.6 16.6 14 431-444 640-653 (717)
79 PRK06569 F0F1 ATP synthase sub 65.5 1.4E+02 0.0031 29.2 16.8 51 363-413 61-111 (155)
80 CHL00118 atpG ATP synthase CF0 65.5 1.2E+02 0.0027 28.6 14.8 16 361-376 71-86 (156)
81 PRK02224 chromosome segregatio 65.5 2.8E+02 0.0061 32.7 22.6 19 331-349 540-558 (880)
82 PF00430 ATP-synt_B: ATP synth 65.5 99 0.0022 27.5 11.9 27 326-352 38-64 (132)
83 PRK14472 F0F1 ATP synthase sub 65.3 1.3E+02 0.0029 28.8 18.2 22 329-350 60-81 (175)
84 COG1340 Uncharacterized archae 64.8 2.1E+02 0.0045 30.9 18.8 123 325-450 104-234 (294)
85 PF09730 BicD: Microtubule-ass 64.4 3.2E+02 0.0068 32.9 18.1 116 326-462 581-706 (717)
86 KOG0163 Myosin class VI heavy 64.2 3.5E+02 0.0075 33.3 20.1 14 529-542 1106-1119(1259)
87 KOG0976 Rho/Rac1-interacting s 63.4 3.6E+02 0.0079 33.2 17.7 78 368-445 327-408 (1265)
88 PF02841 GBP_C: Guanylate-bind 63.2 1.4E+02 0.0031 31.0 12.8 25 419-443 273-297 (297)
89 PRK00106 hypothetical protein; 63.1 2.9E+02 0.0063 32.0 21.9 13 360-372 79-91 (535)
90 PRK07353 F0F1 ATP synthase sub 62.5 1.3E+02 0.0027 27.6 14.6 26 328-353 46-71 (140)
91 PF00430 ATP-synt_B: ATP synth 61.7 1.2E+02 0.0025 27.0 12.0 10 366-375 53-62 (132)
92 PRK09173 F0F1 ATP synthase sub 59.9 1.6E+02 0.0034 27.8 15.6 26 328-353 43-68 (159)
93 PRK14474 F0F1 ATP synthase sub 59.9 2.1E+02 0.0047 29.4 17.5 14 418-431 107-120 (250)
94 PRK10869 recombination and rep 58.6 3.3E+02 0.0072 31.2 16.2 35 499-534 301-335 (553)
95 KOG2196 Nuclear porin [Nuclear 57.8 2.6E+02 0.0056 29.7 20.1 164 328-492 67-251 (254)
96 PF07926 TPR_MLP1_2: TPR/MLP1/ 57.6 1.6E+02 0.0035 27.3 17.3 25 326-350 29-53 (132)
97 PRK11637 AmiB activator; Provi 56.9 2.9E+02 0.0064 30.1 22.1 32 417-448 220-251 (428)
98 PRK14472 F0F1 ATP synthase sub 56.1 1.9E+02 0.0042 27.7 17.5 15 362-376 68-82 (175)
99 cd07657 F-BAR_Fes_Fer The F-BA 54.9 2.5E+02 0.0055 28.7 16.6 117 312-438 18-134 (237)
100 PRK05759 F0F1 ATP synthase sub 54.6 1.8E+02 0.0039 27.0 16.6 25 327-351 44-68 (156)
101 PRK13461 F0F1 ATP synthase sub 54.1 1.9E+02 0.0042 27.2 16.5 22 329-350 47-68 (159)
102 PF08826 DMPK_coil: DMPK coile 54.0 88 0.0019 26.3 7.7 47 325-371 7-57 (61)
103 KOG3850 Predicted membrane pro 53.2 3.8E+02 0.0083 30.3 18.5 12 166-177 125-136 (455)
104 PF11932 DUF3450: Protein of u 53.2 2.6E+02 0.0056 28.3 16.9 14 423-436 127-140 (251)
105 KOG0579 Ste20-like serine/thre 52.8 5.1E+02 0.011 31.6 15.9 55 322-376 835-901 (1187)
106 COG4717 Uncharacterized conser 52.8 5.4E+02 0.012 31.9 21.6 220 296-533 594-828 (984)
107 PRK13453 F0F1 ATP synthase sub 52.2 2.3E+02 0.0049 27.4 17.2 10 419-428 121-130 (173)
108 PF10168 Nup88: Nuclear pore c 51.7 4.9E+02 0.011 31.1 16.5 17 334-350 564-580 (717)
109 PF15070 GOLGA2L5: Putative go 51.5 4.7E+02 0.01 30.8 17.6 37 414-450 183-222 (617)
110 PRK07352 F0F1 ATP synthase sub 51.5 2.3E+02 0.005 27.2 17.5 17 334-350 45-61 (174)
111 PRK14471 F0F1 ATP synthase sub 51.0 2.2E+02 0.0048 26.9 16.5 26 328-353 49-74 (164)
112 KOG0288 WD40 repeat protein Ti 50.8 4.3E+02 0.0092 30.1 17.6 48 421-468 88-135 (459)
113 TIGR03321 alt_F1F0_F0_B altern 50.5 2.9E+02 0.0063 28.1 17.5 9 420-428 109-117 (246)
114 TIGR00634 recN DNA repair prot 50.3 4.3E+02 0.0094 30.0 15.9 10 390-399 213-222 (563)
115 KOG4460 Nuclear pore complex, 50.0 5E+02 0.011 30.7 16.4 26 401-426 634-659 (741)
116 PF00038 Filament: Intermediat 49.8 3.1E+02 0.0067 28.2 22.2 51 321-375 68-118 (312)
117 PRK12704 phosphodiesterase; Pr 49.7 4.5E+02 0.0098 30.1 23.4 13 360-372 64-76 (520)
118 KOG0804 Cytoplasmic Zn-finger 48.8 4.7E+02 0.01 30.1 16.2 29 419-447 424-452 (493)
119 KOG0972 Huntingtin interacting 48.5 3.7E+02 0.0081 29.5 13.0 134 306-447 223-366 (384)
120 COG1322 Predicted nuclease of 48.0 4.6E+02 0.01 29.7 21.2 34 422-455 156-189 (448)
121 PTZ00266 NIMA-related protein 47.3 4.9E+02 0.011 32.6 15.4 10 419-428 497-506 (1021)
122 PRK13460 F0F1 ATP synthase sub 47.0 2.7E+02 0.0058 26.7 17.5 14 363-376 67-80 (173)
123 KOG0612 Rho-associated, coiled 46.0 7.7E+02 0.017 31.7 20.3 12 544-555 828-839 (1317)
124 PRK04863 mukB cell division pr 44.7 8.4E+02 0.018 31.8 24.9 42 508-549 481-522 (1486)
125 PRK14471 F0F1 ATP synthase sub 43.9 2.9E+02 0.0062 26.2 17.5 9 420-428 112-120 (164)
126 PRK07353 F0F1 ATP synthase sub 43.9 2.6E+02 0.0055 25.6 17.5 10 419-428 108-117 (140)
127 PLN03229 acetyl-coenzyme A car 43.6 99 0.0021 37.1 8.7 18 333-350 509-526 (762)
128 KOG4466 Component of histone d 43.2 4.6E+02 0.01 28.3 13.4 21 329-349 58-78 (291)
129 PF12004 DUF3498: Domain of un 42.6 8.2 0.00018 43.6 0.0 59 380-439 424-484 (495)
130 PF07111 HCR: Alpha helical co 42.3 7E+02 0.015 30.2 21.3 25 417-441 576-600 (739)
131 PRK08475 F0F1 ATP synthase sub 41.7 3.3E+02 0.0072 26.3 15.0 21 330-350 65-85 (167)
132 KOG1103 Predicted coiled-coil 41.5 5.6E+02 0.012 28.8 21.2 28 352-379 127-154 (561)
133 PRK13461 F0F1 ATP synthase sub 40.5 3.2E+02 0.0069 25.7 17.5 9 420-428 109-117 (159)
134 TIGR03319 YmdA_YtgF conserved 40.5 6.2E+02 0.013 29.0 22.5 13 360-372 58-70 (514)
135 KOG4460 Nuclear pore complex, 40.4 7E+02 0.015 29.6 16.5 22 453-474 658-679 (741)
136 KOG2072 Translation initiation 40.3 8.1E+02 0.018 30.4 18.1 36 341-378 755-790 (988)
137 KOG0977 Nuclear envelope prote 40.2 6.7E+02 0.014 29.4 21.7 66 321-390 63-132 (546)
138 COG1579 Zn-ribbon protein, pos 40.2 4.6E+02 0.01 27.5 19.8 32 500-542 166-197 (239)
139 cd07643 I-BAR_IMD_MIM Inverse 40.1 4.6E+02 0.01 27.5 19.5 89 337-428 99-189 (231)
140 PF07956 DUF1690: Protein of U 39.4 3.3E+02 0.0071 26.2 10.1 24 384-407 33-56 (142)
141 TIGR03545 conserved hypothetic 38.5 3.7E+02 0.0081 31.1 12.1 70 341-411 193-269 (555)
142 PLN03188 kinesin-12 family pro 38.5 1E+03 0.022 30.9 18.1 32 56-94 747-778 (1320)
143 PF10376 Mei5: Double-strand r 38.4 3.3E+02 0.007 28.1 10.5 26 416-441 171-196 (221)
144 PF09726 Macoilin: Transmembra 37.5 7.9E+02 0.017 29.4 20.1 15 458-472 588-602 (697)
145 PF15070 GOLGA2L5: Putative go 37.2 7.6E+02 0.016 29.1 19.6 19 357-375 33-51 (617)
146 PRK14473 F0F1 ATP synthase sub 37.2 3.7E+02 0.008 25.5 17.5 11 418-428 110-120 (164)
147 PF07926 TPR_MLP1_2: TPR/MLP1/ 37.1 3.4E+02 0.0074 25.1 17.9 25 419-443 94-118 (132)
148 TIGR01144 ATP_synt_b ATP synth 37.1 3.4E+02 0.0073 25.0 16.3 21 330-350 38-58 (147)
149 PF06936 Selenoprotein_S: Sele 36.4 4.2E+02 0.0092 26.8 10.8 16 362-377 78-93 (190)
150 PF09726 Macoilin: Transmembra 36.2 8.3E+02 0.018 29.3 20.2 12 520-531 647-658 (697)
151 KOG2911 Uncharacterized conser 36.1 7.1E+02 0.015 28.5 19.5 112 433-551 290-405 (439)
152 KOG3612 PHD Zn-finger protein 35.4 3E+02 0.0065 32.2 10.5 17 390-406 505-521 (588)
153 TIGR03752 conj_TIGR03752 integ 34.3 4.1E+02 0.0088 30.5 11.3 26 529-558 229-254 (472)
154 PRK10361 DNA recombination pro 34.2 7.7E+02 0.017 28.3 24.0 15 460-474 182-196 (475)
155 KOG1664 Vacuolar H+-ATPase V1 34.1 5.6E+02 0.012 26.7 13.2 55 333-393 6-61 (220)
156 COG2433 Uncharacterized conser 33.8 8.9E+02 0.019 28.9 15.0 13 246-258 317-329 (652)
157 PTZ00121 MAEBL; Provisional 33.4 1.3E+03 0.028 30.7 24.0 12 288-299 1092-1103(2084)
158 PRK09173 F0F1 ATP synthase sub 33.1 4.2E+02 0.0091 24.9 16.2 11 418-428 104-114 (159)
159 PRK13455 F0F1 ATP synthase sub 32.2 4.8E+02 0.01 25.3 19.6 10 419-428 130-139 (184)
160 smart00787 Spc7 Spc7 kinetocho 30.9 7E+02 0.015 26.8 19.2 30 305-334 108-138 (312)
161 KOG3915 Transcription regulato 30.8 6.9E+02 0.015 29.1 12.2 14 384-397 544-557 (641)
162 PLN03086 PRLI-interacting fact 30.6 3.3E+02 0.0071 31.9 10.0 18 475-492 74-91 (567)
163 PF14362 DUF4407: Domain of un 30.3 6.3E+02 0.014 26.1 18.5 19 474-492 239-257 (301)
164 KOG4286 Dystrophin-like protei 29.9 5.6E+02 0.012 31.4 11.7 99 431-532 221-324 (966)
165 TIGR03185 DNA_S_dndD DNA sulfu 29.8 9.3E+02 0.02 27.9 16.4 53 421-473 440-492 (650)
166 KOG0982 Centrosomal protein Nu 29.7 9.2E+02 0.02 27.8 21.0 110 417-548 326-436 (502)
167 KOG0796 Spliceosome subunit [R 29.6 7.9E+02 0.017 27.0 12.0 37 437-473 186-224 (319)
168 KOG0994 Extracellular matrix g 29.4 1.4E+03 0.03 29.8 21.3 33 324-356 1500-1532(1758)
169 KOG4403 Cell surface glycoprot 29.4 9.4E+02 0.02 27.8 17.5 50 416-465 368-426 (575)
170 COG4372 Uncharacterized protei 29.3 9.1E+02 0.02 27.6 23.4 17 321-337 95-111 (499)
171 KOG2751 Beclin-like protein [S 29.3 9.1E+02 0.02 27.7 16.5 19 419-437 249-267 (447)
172 KOG2129 Uncharacterized conser 28.9 9.5E+02 0.02 27.7 13.0 27 363-389 256-282 (552)
173 PRK12705 hypothetical protein; 28.7 9.6E+02 0.021 27.7 21.4 7 543-549 322-328 (508)
174 PRK08404 V-type ATP synthase s 28.3 4.5E+02 0.0097 23.8 14.4 14 337-350 8-21 (103)
175 PRK10929 putative mechanosensi 28.1 1.3E+03 0.029 29.2 20.1 26 288-314 23-49 (1109)
176 PF03938 OmpH: Outer membrane 28.0 4.8E+02 0.01 24.0 11.7 7 312-318 22-28 (158)
177 PF10267 Tmemb_cc2: Predicted 28.0 9E+02 0.019 27.1 19.4 36 387-423 270-309 (395)
178 PRK06568 F0F1 ATP synthase sub 27.2 6E+02 0.013 24.8 16.6 27 418-447 106-132 (154)
179 cd07654 F-BAR_FCHSD The F-BAR 27.0 7.5E+02 0.016 25.9 17.0 35 312-347 18-52 (264)
180 PF07431 DUF1512: Protein of u 26.9 9.1E+02 0.02 26.9 12.8 124 429-573 115-260 (355)
181 PF05483 SCP-1: Synaptonemal c 26.8 1.2E+03 0.027 28.3 21.2 29 347-375 458-486 (786)
182 cd07664 BAR_SNX2 The Bin/Amphi 26.7 7.2E+02 0.016 25.6 17.0 27 313-339 87-113 (234)
183 KOG2129 Uncharacterized conser 26.5 1E+03 0.023 27.4 17.5 19 369-387 206-224 (552)
184 PF05667 DUF812: Protein of un 26.4 1.1E+03 0.024 27.7 22.2 34 394-427 398-434 (594)
185 PRK04778 septation ring format 26.4 1E+03 0.022 27.3 21.8 42 315-356 269-310 (569)
186 PF00957 Synaptobrevin: Synapt 26.2 4.1E+02 0.0089 22.6 11.5 41 423-463 27-67 (89)
187 PF07888 CALCOCO1: Calcium bin 26.0 1.1E+03 0.024 27.6 22.3 9 478-486 308-316 (546)
188 KOG2077 JNK/SAPK-associated pr 26.0 1.2E+03 0.026 28.0 20.4 39 411-450 395-433 (832)
189 PF12486 DUF3702: ImpA domain 25.7 3.9E+02 0.0085 26.0 8.3 61 458-529 87-147 (148)
190 cd07630 BAR_SNX_like The Bin/A 25.6 7E+02 0.015 25.0 17.6 30 311-340 69-98 (198)
191 PF08703 PLC-beta_C: PLC-beta 25.4 7.2E+02 0.016 25.2 17.0 28 430-457 105-132 (185)
192 PF10234 Cluap1: Clusterin-ass 25.0 6.5E+02 0.014 26.8 10.3 49 328-376 158-206 (267)
193 PF14643 DUF4455: Domain of un 24.4 1E+03 0.022 26.7 14.1 9 421-429 98-106 (473)
194 PF09744 Jnk-SapK_ap_N: JNK_SA 24.4 6.8E+02 0.015 24.5 15.1 105 330-451 5-117 (158)
195 PF07888 CALCOCO1: Calcium bin 24.2 1.2E+03 0.026 27.4 22.2 32 417-448 397-428 (546)
196 PRK08475 F0F1 ATP synthase sub 24.1 6.6E+02 0.014 24.3 15.8 6 421-426 127-132 (167)
197 KOG3054 Uncharacterized conser 24.0 7.7E+02 0.017 26.5 10.5 19 510-528 269-287 (299)
198 KOG3612 PHD Zn-finger protein 24.0 3.5E+02 0.0075 31.7 8.6 13 364-376 493-505 (588)
199 COG0711 AtpF F0F1-type ATP syn 24.0 6.5E+02 0.014 24.2 19.9 8 421-428 111-118 (161)
200 cd09235 V_Alix Middle V-domain 23.9 9.1E+02 0.02 25.8 12.4 68 418-485 253-323 (339)
201 PRK10884 SH3 domain-containing 23.5 7.9E+02 0.017 25.0 11.8 10 434-443 150-159 (206)
202 KOG2792 Putative cytochrome C 23.1 89 0.0019 33.3 3.6 57 24-82 37-95 (280)
203 KOG1916 Nuclear protein, conta 23.0 1.6E+03 0.035 28.5 15.8 17 333-349 867-883 (1283)
204 PF06210 DUF1003: Protein of u 22.8 6E+02 0.013 23.4 8.5 34 310-350 40-78 (108)
205 PRK10622 pheA bifunctional cho 22.3 1.1E+03 0.023 26.1 12.3 133 431-576 6-148 (386)
206 PF03179 V-ATPase_G: Vacuolar 22.3 5.4E+02 0.012 22.7 12.1 14 337-350 20-33 (105)
207 KOG1144 Translation initiation 22.1 1E+03 0.022 29.6 12.0 12 332-343 218-229 (1064)
208 TIGR02168 SMC_prok_B chromosom 22.0 1.4E+03 0.03 27.3 24.1 33 497-529 1010-1045(1179)
209 TIGR00606 rad50 rad50. This fa 22.0 1.7E+03 0.037 28.3 22.0 159 329-488 633-836 (1311)
210 PF04568 IATP: Mitochondrial A 22.0 6.1E+02 0.013 23.3 8.3 21 360-380 72-92 (100)
211 PRK11637 AmiB activator; Provi 21.9 1.1E+03 0.023 25.9 21.5 11 573-583 364-374 (428)
212 KOG4807 F-actin binding protei 21.6 1.3E+03 0.027 26.6 17.9 205 288-496 250-493 (593)
213 KOG0250 DNA repair protein RAD 21.6 1.7E+03 0.038 28.3 23.3 22 429-450 308-329 (1074)
214 PF10444 Nbl1_Borealin_N: Nbl1 21.5 1.9E+02 0.0042 23.5 4.6 40 337-376 3-43 (59)
215 PF05283 MGC-24: Multi-glycosy 21.2 1.3E+02 0.0029 30.3 4.3 19 62-80 163-181 (186)
216 KOG0999 Microtubule-associated 21.0 1.5E+03 0.032 27.2 19.0 148 308-465 562-724 (772)
217 PRK14148 heat shock protein Gr 21.0 8.8E+02 0.019 24.6 13.7 73 429-514 90-168 (195)
218 PF12999 PRKCSH-like: Glucosid 20.9 4.9E+02 0.011 26.2 8.0 17 360-376 149-165 (176)
219 PF14223 UBN2: gag-polypeptide 20.8 5.7E+02 0.012 22.4 7.8 37 494-530 65-111 (119)
220 KOG4809 Rab6 GTPase-interactin 20.8 1.5E+03 0.032 27.1 15.5 32 416-447 421-452 (654)
221 TIGR01837 PHA_granule_1 poly(h 20.6 6.8E+02 0.015 23.1 10.0 16 431-446 97-112 (118)
222 PLN03086 PRLI-interacting fact 20.1 8E+02 0.017 28.8 10.6 20 520-539 198-217 (567)
223 KOG0249 LAR-interacting protei 20.1 1.7E+03 0.036 27.5 13.9 130 297-449 191-320 (916)
No 1
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=100.00 E-value=1.2e-49 Score=428.47 Aligned_cols=305 Identities=30% Similarity=0.398 Sum_probs=264.3
Q ss_pred cchhhhhhccccccccCCCcchhhhhhhHhhhhcccc--cCCCchHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 007907 268 PASLLDAYHLRDKIDEGIDKATEDFINVMEELNNGYL--SKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYE 345 (585)
Q Consensus 268 ~~sl~~~y~l~~~~~~~~~~~~e~~~~~~e~~~~~~~--~~dgk~~~d~~~aih~ae~~Qae~Da~~~~Eelk~L~ekfE 345 (585)
-+.+++.|+..+..+.....+..-.-+.+..++++.+ .+++.++.++...|+...++.++++........+.|..+++
T Consensus 208 ~~~i~~~~~~~~~~~~~~~el~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~ 287 (582)
T PF09731_consen 208 LPKIVEEYKELVEEEPEVQELVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKEEEEEELERALEEQRE 287 (582)
T ss_pred hhhhhhhhhhhhhhhhhHHHHHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788889988776665552222222255677888888 88999999999999999999999999999888888988888
Q ss_pred HHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH
Q 007907 346 KELRDSRAREL-----MRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNA--------LEL 412 (585)
Q Consensus 346 keLk~~ra~El-----~~aee~a~lreELEkEraklAaalKalee~leeKLr~ELer~~eE~eqkLkql--------eE~ 412 (585)
..++..+.... .+.++...|+.||++++.++ ++.|+++|+.+|++..+.+++++++. ++.
T Consensus 288 e~~~~~~~~~~~~le~~~~~~~~~~~~e~~~~~~~l-------~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~ 360 (582)
T PF09731_consen 288 ELLSKLREELEQELEEKRAELEEELREEFEREREEL-------EEKYEEELRQELKRQEEAHEEHLKNELREQAIELQRE 360 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 75555333333 33455578888888888776 88899999999999999999988653 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCcHHHHHHHH
Q 007907 413 AKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRG-----LPIQKEIDTLY 487 (585)
Q Consensus 413 aKaEI~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~rse~lr~s~~tQqL~lAv~AL~saL~sg-----~PL~~EL~aLk 487 (585)
+..+|+++|++||++|+++|++|..+|++||+++.+|+...+.++++|+||+||.+|+++|.+| .||.+||.+|+
T Consensus 361 ~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~l~~a~~~l~~~l~~~~~~~~~p~~~el~~l~ 440 (582)
T PF09731_consen 361 FEKEIKEKVEQERNGRLAKLAELNSRLKALEEALDARSEAEDENRRAQQLWLAVDALKSALDSGNAGSPRPFEDELRALK 440 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHH
Confidence 3456899999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred HhhcCCCCchHHHHHHhcCChhHhhcCCCCHHHHHHHHHHHHhccccccccCCCCCcHHHHHHHHHHhhcccccCC---C
Q 007907 488 TYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIASWLKVHQVS---G 564 (585)
Q Consensus 488 e~A~g~~~D~LV~aaIsSLPeeA~qrGV~T~~qL~~RF~kV~~~vRraSLVPe~gAGvlsHalS~v~S~LlFk~~~---p 564 (585)
.++.+ |+||++||++||+.+.++||+|+.+|++||++|++++|++||||++||||++|++||++|+|+|++.+ .
T Consensus 441 ~~~~~---d~~v~~~l~~l~~~a~~~Gv~s~~~L~~rf~~v~~~~r~~~l~~~~~~g~~~~~~s~~~S~l~~~~~~~~~~ 517 (582)
T PF09731_consen 441 ELAPD---DELVDAALSSLPPEAAQRGVPSEAQLRNRFERVAPEVRRASLVPPEGAGLLGHLLSYLFSLLLFRPKGGEVD 517 (582)
T ss_pred HhCCC---ChHHHHHHHhcCHHHhhCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHheeeeecCCCCCC
Confidence 99876 99999999999999999999999999999999999999999998888999999999999999999555 4
Q ss_pred ccHHHHHHhhhhcceeeE
Q 007907 565 LSIIVALQLICHYQYFFT 582 (585)
Q Consensus 565 is~~~~~~~~~~~~y~~~ 582 (585)
.+|+|+-+||+|++|||.
T Consensus 518 ~~~~d~~~ilarae~~l~ 535 (582)
T PF09731_consen 518 PEGDDVESILARAEYYLE 535 (582)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 599999999999999974
No 2
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=99.96 E-value=3.3e-27 Score=256.55 Aligned_cols=226 Identities=21% Similarity=0.350 Sum_probs=188.4
Q ss_pred HHHHhhhHHHH----HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH
Q 007907 352 RARELMRTEEA----AILEKELKRERAKAAA----TIKSLQEKMEEKLRMELEQKENEAESKLKNALEL--------AKA 415 (585)
Q Consensus 352 ra~El~~aee~----a~lreELEkEraklAa----alKalee~leeKLr~ELer~~eE~eqkLkqleE~--------aKa 415 (585)
+++|.....+. +++..|++.++.+++. .+......++.-+++++.+....|-.+|+++.++ ++.
T Consensus 347 ~aiEk~Rl~~~~a~~~~~~~~~~~h~~~~~~E~~~~~~~~~~~~~~el~~ql~~qa~ah~dhik~vvr~q~q~~~~e~~~ 426 (657)
T KOG1854|consen 347 RAIEKQRLQDSRALRAQLEYELEAHRRELQQELFKLIEEIRSSSKNELRNQLKRQAKAHLDHIKDVVRQQEQLLTIEFKQ 426 (657)
T ss_pred HHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 55666444433 4455566666665533 2333445577788888888888888888754433 256
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCcHHHHHHHHHh
Q 007907 416 EIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRG------LPIQKEIDTLYTY 489 (585)
Q Consensus 416 EI~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~rse~lr~s~~tQqL~lAv~AL~saL~sg------~PL~~EL~aLke~ 489 (585)
++.++|.+||+-|..+++.+.++|++|+.++..+......+...|+||++|.+|++.+..| .||+..+.+|+..
T Consensus 427 ~~~e~~l~ernl~~~qvg~aL~rLrgie~aL~~~~~~~~e~r~a~q~w~ac~nlk~s~~~g~~e~r~~pLg~~vn~~k~~ 506 (657)
T KOG1854|consen 427 KLEEAVLQERNLHSSQVGKALSRLRGIEQALQERVRAELEARKAKQLWLACSNLKDSLNKGHYEMRRHPLGKHVNALKEV 506 (657)
T ss_pred HHHHHHHHHhcchHhHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccccccccCchhHHHHHHhcc
Confidence 7999999999999999999999999999999999999999999999999999999999865 7999999999888
Q ss_pred hcCCCCchHHHHHHhcCChhHhhcCCCCHHHHHHHHHHHHhccccccccCCCCCcHHHHHHHHHHhhcccc---cCCCc-
Q 007907 490 LDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIASWLKVH---QVSGL- 565 (585)
Q Consensus 490 A~g~~~D~LV~aaIsSLPeeA~qrGV~T~~qL~~RF~kV~~~vRraSLVPe~gAGvlsHalS~v~S~LlFk---~~~pi- 565 (585)
+.+ |+||.+++.+||+++..+||||+++|++||+.|++++||+||||++| |+++|.+..|+|.|+|. ..+|.
T Consensus 507 ~~~---delv~a~~~~ipk~~~~rgiysee~L~~RF~~l~ki~rr~a~l~e~g-g~lg~yf~sl~Slfl~~~~q~g~~~~ 582 (657)
T KOG1854|consen 507 TKD---DELVAAALDSIPKEADTRGIYSEEDLRNRFNTLSKIARRTALLPEEG-GFLGQYFLSLQSLFLLSPQQLGNPVF 582 (657)
T ss_pred CCc---HHHHHHHHHhcccccccCCCCCHHHHHHHHHHHHHHHHHhhccCCCC-chHHHHHHHhhhheeecHhhcCCCcc
Confidence 866 99999999999999999999999999999999999999999999995 66665554499999998 44455
Q ss_pred ---cHHHHHHhhhhcceee
Q 007907 566 ---SIIVALQLICHYQYFF 581 (585)
Q Consensus 566 ---s~~~~~~~~~~~~y~~ 581 (585)
.+.|.-.+|.||.||+
T Consensus 583 ~~p~~~d~~~iLsrA~~~~ 601 (657)
T KOG1854|consen 583 LDPNITDTYKILSRARYHL 601 (657)
T ss_pred CCcccccHHHHHHHHHHHH
Confidence 6889999999999986
No 3
>COG4223 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.77 E-value=5.6e-08 Score=101.85 Aligned_cols=148 Identities=24% Similarity=0.319 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCCCCchH
Q 007907 419 ASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSV 498 (585)
Q Consensus 419 eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~rse~lr~s~~tQqL~lAv~AL~saL~sg~PL~~EL~aLke~A~g~~~D~L 498 (585)
..+-.||...++...+|+++|.+||..+..-...... .+.+++.+|+.++.+|.||..||..|..++-+ ||=
T Consensus 223 salp~ersta~Aa~ael~gRiaalEqs~ne~ad~iea-----A~aiaatalKtAidrggPF~aELdtL~~VaP~---dP~ 294 (422)
T COG4223 223 SALPAERSTALAAVAELNGRIAALEQSLNEPADDIEA-----ALAIAATALKTAIDRGGPFLAELDTLESVAPG---DPA 294 (422)
T ss_pred hccchhhhhHHHHHHHHhhhHHHHHHHhccchhHHHH-----HHHHHHHHHHHHHhcCCCchHHHhhHhhhCCC---Chh
Confidence 3455668888889999999999999887655543322 33679999999999999999999999999987 765
Q ss_pred HHHHHhcCChhHhhcCCCCHHHHHHHHHHHHhccccccccCCCCCcHHHHHHHHHHhhcccccCCCccHHHHHHhhhhcc
Q 007907 499 LDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIASWLKVHQVSGLSIIVALQLICHYQ 578 (585)
Q Consensus 499 V~aaIsSLPeeA~qrGV~T~~qL~~RF~kV~~~vRraSLVPe~gAGvlsHalS~v~S~LlFk~~~pis~~~~~~~~~~~~ 578 (585)
|. +|-+ ....||+|..+|..+|..|.+..--++-=|+-++|||..+++..+|.+.+++.+-+.|.-+--+|+|.|
T Consensus 295 l~----~L~~-~A~tGvPTRaeL~~qF~~~AnamvsA~~~pd~nagl~~rL~~Sa~slVsVRpVGsveG~t~~a~iARmE 369 (422)
T COG4223 295 LA----ALRP-YAATGVPTRAELATQFGAVANAMVSASNNPDPNAGLFDRLRSSASSLVSVRPVGSVEGSTPDAMIARME 369 (422)
T ss_pred hH----HhhH-HHhcCCCcHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcceeeeeccccCCCCcchHHHHHH
Confidence 54 4433 456999999999999999999888888888877999999999999999999999999999999999987
Q ss_pred e
Q 007907 579 Y 579 (585)
Q Consensus 579 y 579 (585)
-
T Consensus 370 a 370 (422)
T COG4223 370 A 370 (422)
T ss_pred H
Confidence 4
No 4
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=96.86 E-value=0.38 Score=53.50 Aligned_cols=74 Identities=26% Similarity=0.298 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 334 AEEKRALKEKYEKELRD-SRARELMRTEEAAILEKELKRERAKA-AATIKSLQEKMEEKLRMELEQKENEAESKLK 407 (585)
Q Consensus 334 ~Eelk~L~ekfEkeLk~-~ra~El~~aee~a~lreELEkErakl-AaalKalee~leeKLr~ELer~~eE~eqkLk 407 (585)
.+..+.+..++..+++. ..+.+..+.+++..++.++++..... ..+|+.+++.+.++|++++..+.++..+++.
T Consensus 287 ~e~~~~~~~~~~~~le~~~~~~~~~~~~e~~~~~~~l~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~~~ 362 (582)
T PF09731_consen 287 EELLSKLREELEQELEEKRAELEEELREEFEREREELEEKYEEELRQELKRQEEAHEEHLKNELREQAIELQREFE 362 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666777766766 22344478888888888888886655 8899999999999999999999988877654
No 5
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=96.24 E-value=1.6 Score=44.04 Aligned_cols=75 Identities=12% Similarity=0.099 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHhcC-----CCcHHHHHHHH
Q 007907 415 AEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKS--YFAHKLALGALALEDALSRG-----LPIQKEIDTLY 487 (585)
Q Consensus 415 aEI~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~rse~lr~s--~~tQqL~lAv~AL~saL~sg-----~PL~~EL~aLk 487 (585)
.++.+.++.||..|..+=..+..+|+.+..-+...-+..+.. ...+.|.--+..+...-..+ .-+-.||.+|+
T Consensus 131 ~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~~~v~~Ei~~lk 210 (247)
T PF06705_consen 131 NELQEAFENERNEREEREENILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQFQNFVLEEIAALK 210 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 346777888888888888888888777777776665444333 23334433333333322221 13456666665
Q ss_pred Hh
Q 007907 488 TY 489 (585)
Q Consensus 488 e~ 489 (585)
..
T Consensus 211 ~~ 212 (247)
T PF06705_consen 211 NA 212 (247)
T ss_pred HH
Confidence 53
No 6
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=95.96 E-value=2.1 Score=43.09 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 417 IAASIAREKVAQIEKMAEANLHINALC 443 (585)
Q Consensus 417 I~eaVe~ER~gRLaKL~EL~~~V~aLE 443 (585)
+..+|+.||..|-.++.++...+..+.
T Consensus 162 l~~~i~~Ek~~Re~~~~~l~~~le~~~ 188 (247)
T PF06705_consen 162 LQEKIEKEKNTRESKLSELRSELEEVK 188 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555544444
No 7
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=93.93 E-value=9.9 Score=40.15 Aligned_cols=58 Identities=12% Similarity=0.141 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 415 AEIAASIAREKVAQIEKMAEANLHIN-ALCMAFYARSEEARKSYFAHKLALGALALEDA 472 (585)
Q Consensus 415 aEI~eaVe~ER~gRLaKL~EL~~~V~-aLE~Al~~rse~lr~s~~tQqL~lAv~AL~sa 472 (585)
..|..+...+|..-|+-|......|. ++..++.+|+......--+..|++|+-.-+..
T Consensus 199 ~~l~~ka~e~R~t~lesI~t~f~~lg~G~~~lltD~~kl~~~vgg~T~LA~GvYtar~g 257 (276)
T PF12037_consen 199 EQLRLKAEEERETVLESINTTFSHLGEGFRALLTDRDKLTTTVGGLTALAAGVYTAREG 257 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 44667777777777777777777776 66677777777766666666666665554433
No 8
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=92.64 E-value=10 Score=43.96 Aligned_cols=94 Identities=11% Similarity=0.102 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 363 AILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKN--ALELAKAEIAASIAREKVAQIEKMAEANLHIN 440 (585)
Q Consensus 363 a~lreELEkEraklAaalKalee~leeKLr~ELer~~eE~eqkLkq--leE~aKaEI~eaVe~ER~gRLaKL~EL~~~V~ 440 (585)
..|+.||.++..++ .+++-+.+++.++++-+.+.+|..+++.+ ++|++. -..+|. ..|++|..+...|.
T Consensus 388 ~~~~~el~~ql~~q---a~ah~dhik~vvr~q~q~~~~e~~~~~~e~~l~ernl--~~~qvg----~aL~rLrgie~aL~ 458 (657)
T KOG1854|consen 388 SSSKNELRNQLKRQ---AKAHLDHIKDVVRQQEQLLTIEFKQKLEEAVLQERNL--HSSQVG----KALSRLRGIEQALQ 458 (657)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc--hHhHHH----HHHHHHHhHHHHHH
Confidence 45555555555554 45567788889999999999999999975 444442 344444 36666666666666
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Q 007907 441 ALCMAFYARSEEARKSYFAHKLALG 465 (585)
Q Consensus 441 aLE~Al~~rse~lr~s~~tQqL~lA 465 (585)
..-.+--..+..-..=.+||+||-.
T Consensus 459 ~~~~~~~e~r~a~q~w~ac~nlk~s 483 (657)
T KOG1854|consen 459 ERVRAELEARKAKQLWLACSNLKDS 483 (657)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 5554432222222223357777643
No 9
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=92.33 E-value=33 Score=42.31 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=14.8
Q ss_pred hhHhhcCCCC--HHHHHHHHHHHHhcccc
Q 007907 508 EETRYHGTET--LLQLNQKFDALKGTLRH 534 (585)
Q Consensus 508 eeA~qrGV~T--~~qL~~RF~kV~~~vRr 534 (585)
.+...+||.+ ..+|.++...+...+++
T Consensus 761 ~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ 789 (1201)
T PF12128_consen 761 QELAGKGVDPERIQQLKQEIEQLEKELKR 789 (1201)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3445566665 45556666555555444
No 10
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.18 E-value=24 Score=42.89 Aligned_cols=62 Identities=29% Similarity=0.470 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Q 007907 362 AAILEKELKRERAKA-AATIKSLQEKMEEKLRMELEQKENEAESK-----------LKNALELAKAEIAASIAREK 425 (585)
Q Consensus 362 ~a~lreELEkErakl-AaalKalee~leeKLr~ELer~~eE~eqk-----------LkqleE~aKaEI~eaVe~ER 425 (585)
.+-|++|+..||++- +.++..+.++.++ |.+.|+-++.|.+.+ ++|++.++.+ +++++.+=|
T Consensus 315 maTldKEmAEERaesLQ~eve~lkEr~de-letdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~r-LKdalVrLR 388 (1243)
T KOG0971|consen 315 MATLDKEMAEERAESLQQEVEALKERVDE-LETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNAR-LKDALVRLR 388 (1243)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHH-HHHHHHHHH
Confidence 366788888888877 7777777776553 667777787777764 5677777744 555554433
No 11
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=90.72 E-value=30 Score=38.33 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 007907 329 DGRAFAEEKRALKEKYEKELRDS 351 (585)
Q Consensus 329 Da~~~~Eelk~L~ekfEkeLk~~ 351 (585)
+|....+++..++++|++.+.++
T Consensus 43 eAe~a~~ea~~~~~~~e~~L~~A 65 (445)
T PRK13428 43 ESATAADRLAEADQAHTKAVEDA 65 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888888888888873
No 12
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=89.57 E-value=5.4 Score=37.66 Aligned_cols=32 Identities=13% Similarity=0.154 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 414 KAEIAASIAREKVAQIEKMAEANLHINALCMA 445 (585)
Q Consensus 414 KaEI~eaVe~ER~gRLaKL~EL~~~V~aLE~A 445 (585)
...+...+++||+.|+.+...+..+++.++.+
T Consensus 58 ~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~~L 89 (131)
T PF11068_consen 58 IQSIQQQFEQEKQERLEQKNQLLQQLEQVQKL 89 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34588999999999999999999999988765
No 13
>PTZ00121 MAEBL; Provisional
Probab=89.52 E-value=62 Score=41.47 Aligned_cols=34 Identities=18% Similarity=0.073 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007907 429 IEKMAEANLHINALCMAFYARSEEARKSYFAHKL 462 (585)
Q Consensus 429 LaKL~EL~~~V~aLE~Al~~rse~lr~s~~tQqL 462 (585)
-+.|++...+-.++..=-..+.+.++....-+++
T Consensus 1259 ear~a~~A~r~aa~k~Ee~RrAee~~k~Ee~r~a 1292 (2084)
T PTZ00121 1259 EARMAHFARRQAAIKAEEARKADELKKAEEKKKA 1292 (2084)
T ss_pred HHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433344444444444443333
No 14
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=89.35 E-value=29 Score=41.74 Aligned_cols=70 Identities=19% Similarity=0.290 Sum_probs=39.6
Q ss_pred HHHHHHhhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 007907 318 IHAAEQRQAELDGRAFAEE----KRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKA-AATIKSLQEKME 388 (585)
Q Consensus 318 ih~ae~~Qae~Da~~~~Ee----lk~L~ekfEkeLk~~ra~El~~aee~a~lreELEkErakl-AaalKalee~le 388 (585)
|.++...|.+.|...|... +..+..++|..+++ +..=.+|...--.|.+.+..+++.. ...++..+..++
T Consensus 708 ~e~~~~~~~~~d~e~~e~~Ek~Ri~~~~ae~e~~vk~-k~~l~rm~~d~~~f~e~vk~~rqs~~~e~~~~~ea~le 782 (988)
T KOG2072|consen 708 IEKAYDERQEEDRELYEAREKQRIEAAIAERESAVKD-KKRLSRMYDDRDKFKEHVKGERQSEYEEKLKQFEARLE 782 (988)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 5677788888888877633 33445666766666 2222244445555666666665555 444444444333
No 15
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=89.14 E-value=67 Score=39.80 Aligned_cols=36 Identities=14% Similarity=-0.022 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhcccccCCCccHHHHHHhhhhcceee
Q 007907 546 LTHSLAHIASWLKVHQVSGLSIIVALQLICHYQYFF 581 (585)
Q Consensus 546 lsHalS~v~S~LlFk~~~pis~~~~~~~~~~~~y~~ 581 (585)
+.+..-...+.+.|-.+..+..++....+..-+-||
T Consensus 937 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~ 972 (1201)
T PF12128_consen 937 LAENWEELRSEDSFLSDKGINSDDYRQWAPDLQELL 972 (1201)
T ss_pred hHHHHHHHHHhccccccccccchhHHHHHHHHHHHH
Confidence 333333446667777787777777766666655554
No 16
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=88.16 E-value=21 Score=42.31 Aligned_cols=39 Identities=23% Similarity=0.224 Sum_probs=23.5
Q ss_pred cCCCCHHHH--HHHHH--HHHhccccccccCCCCCcHHHHHHH
Q 007907 513 HGTETLLQL--NQKFD--ALKGTLRHFSLIPPGGGGILTHSLA 551 (585)
Q Consensus 513 rGV~T~~qL--~~RF~--kV~~~vRraSLVPe~gAGvlsHalS 551 (585)
+|-...+.+ .++|- -+..-.+.+-.|.--|.|+|--++-
T Consensus 710 ~G~~~eeA~~~l~~fl~~a~~~g~~~v~IIHGkGtG~Lr~~v~ 752 (782)
T PRK00409 710 RGMRYEEALERLDKYLDDALLAGYGEVLIIHGKGTGKLRKGVQ 752 (782)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCEEEEEcCCChhHHHHHHH
Confidence 455544444 34553 3445677888888766687765443
No 17
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.15 E-value=20 Score=39.10 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=19.6
Q ss_pred HHHHHHHHHH----HHHHHHhcC-CCcHHHHHHHHHhhc
Q 007907 458 FAHKLALGAL----ALEDALSRG-LPIQKEIDTLYTYLD 491 (585)
Q Consensus 458 ~tQqL~lAv~----AL~saL~sg-~PL~~EL~aLke~A~ 491 (585)
.+-++-+||+ .|..++..| .+|..-|+.+|-++.
T Consensus 307 ~~~A~d~aieD~i~~L~~~~r~G~i~l~~yLr~VR~lsR 345 (365)
T KOG2391|consen 307 ECYALDLAIEDAIYSLGKSLRDGVIDLDQYLRHVRLLSR 345 (365)
T ss_pred HhhhhhhHHHHHHHHHHHHHhcCeeeHHHHHHHHHHHHH
Confidence 3344444555 455555554 577777777776665
No 18
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.11 E-value=54 Score=39.53 Aligned_cols=9 Identities=56% Similarity=0.686 Sum_probs=4.2
Q ss_pred HHhhhhhhH
Q 007907 322 EQRQAELDG 330 (585)
Q Consensus 322 e~~Qae~Da 330 (585)
+|=|||+|-
T Consensus 323 ~kGqaELer 331 (1118)
T KOG1029|consen 323 EKGQAELER 331 (1118)
T ss_pred hhhhHHHHH
Confidence 344555553
No 19
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=87.53 E-value=25 Score=32.95 Aligned_cols=25 Identities=12% Similarity=0.233 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 328 LDGRAFAEEKRALKEKYEKELRDSR 352 (585)
Q Consensus 328 ~Da~~~~Eelk~L~ekfEkeLk~~r 352 (585)
.+|....++...+..+|+..++++|
T Consensus 48 ~~A~~~~~ea~~~~~e~e~~l~~Ar 72 (141)
T PRK08476 48 EKVKTNSSDVSEIEHEIETILKNAR 72 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777777777777633
No 20
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.26 E-value=52 Score=39.64 Aligned_cols=18 Identities=44% Similarity=0.693 Sum_probs=10.2
Q ss_pred CCCchHhH-HHHHHHHHHH
Q 007907 306 KDGKVVLD-FLQAIHAAEQ 323 (585)
Q Consensus 306 ~dgk~~~d-~~~aih~ae~ 323 (585)
.||||-.| ||=|.|..+.
T Consensus 242 ~DGkL~~dEfilam~liem 260 (1118)
T KOG1029|consen 242 GDGKLSADEFILAMHLIEM 260 (1118)
T ss_pred CCCcccHHHHHHHHHHHHH
Confidence 46666554 6666665544
No 21
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=87.21 E-value=33 Score=33.95 Aligned_cols=21 Identities=43% Similarity=0.813 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 007907 335 EEKRALKEKYEKELRDSRAREL 356 (585)
Q Consensus 335 Eelk~L~ekfEkeLk~~ra~El 356 (585)
++..+++.+||.+++. ++.++
T Consensus 60 ee~~~~r~~~E~E~~~-~~~el 80 (201)
T PF12072_consen 60 EEAQKLRQELERELKE-RRKEL 80 (201)
T ss_pred HHHHHHHHHHHHHHHH-HHHHH
Confidence 4555566666666665 44444
No 22
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=86.91 E-value=19 Score=34.88 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 007907 329 DGRAFAEEKRALKEKYEKELRDS 351 (585)
Q Consensus 329 Da~~~~Eelk~L~ekfEkeLk~~ 351 (585)
+|.-..++...+.++|+..|+++
T Consensus 46 ~Ae~~r~eA~~l~~e~e~~L~~A 68 (154)
T PRK06568 46 KAEKLKEDAALLFEQTNAQIKKL 68 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777763
No 23
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=86.88 E-value=35 Score=34.13 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 329 DGRAFAEEKRALKEKYEKELRDSRAR 354 (585)
Q Consensus 329 Da~~~~Eelk~L~ekfEkeLk~~ra~ 354 (585)
+|....++...+..+|++.|.++|..
T Consensus 95 ~Ae~~k~eAe~~~~~ye~~L~~Ar~e 120 (204)
T PRK09174 95 QAARLKQEADAAVAAYEQELAQARAK 120 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666677788888888874443
No 24
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=85.78 E-value=41 Score=33.70 Aligned_cols=17 Identities=24% Similarity=0.262 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007907 418 AASIAREKVAQIEKMAE 434 (585)
Q Consensus 418 ~eaVe~ER~gRLaKL~E 434 (585)
...|+++|..=+..|..
T Consensus 155 e~~I~~ek~~A~~el~~ 171 (204)
T PRK09174 155 EARIAAIKAKAMADVGS 171 (204)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666655444433
No 25
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=85.26 E-value=38 Score=40.34 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHH
Q 007907 331 RAFAEEKRALKEKYEKELRDSRAREL-MRTEEAAILEKELKRE 372 (585)
Q Consensus 331 ~~~~Eelk~L~ekfEkeLk~~ra~El-~~aee~a~lreELEkE 372 (585)
.++.+.+.+|+.+|+.++.+ +... -..+.+.+|++||-+.
T Consensus 458 ~~L~e~IeKLk~E~d~e~S~--A~~~~gLk~kL~~Lr~E~sKa 498 (762)
T PLN03229 458 LALNEMIEKLKKEIDLEYTE--AVIAMGLQERLENLREEFSKA 498 (762)
T ss_pred hHHHHHHHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHHHHhc
Confidence 46778899999999999885 3333 4455566666666663
No 26
>PRK12704 phosphodiesterase; Provisional
Probab=84.10 E-value=83 Score=35.81 Aligned_cols=7 Identities=43% Similarity=0.700 Sum_probs=4.1
Q ss_pred CcHHHHH
Q 007907 543 GGILTHS 549 (585)
Q Consensus 543 AGvlsHa 549 (585)
.++|.|.
T Consensus 334 qn~l~Hs 340 (520)
T PRK12704 334 QNVLQHS 340 (520)
T ss_pred CcHhHHH
Confidence 3566664
No 27
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=83.18 E-value=58 Score=39.77 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=22.2
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCCCCccchhhHH
Q 007907 30 RKEYSTASQKNVSPKPGPTGKPPESGSNFSPIIFGATV 67 (585)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~k~~~g~~~ 67 (585)
||+|.|-..++.+=+|-=...|. .|.|++|-.++
T Consensus 737 Rk~~rtrt~~~n~~npvy~eepf----vF~KVvLpeLA 770 (1189)
T KOG1265|consen 737 RKEFRTRTVQGNSFNPVYEEEPF----VFRKVVLPELA 770 (1189)
T ss_pred hhhhhhccccCCCCCcccccCCc----ccceecccchh
Confidence 46677777777776666666654 46777755544
No 28
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=82.55 E-value=60 Score=33.02 Aligned_cols=160 Identities=13% Similarity=0.091 Sum_probs=95.7
Q ss_pred CCchHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 307 DGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEK 386 (585)
Q Consensus 307 dgk~~~d~~~aih~ae~~Qae~Da~~~~Eelk~L~ekfEkeLk~~ra~El~~aee~a~lreELEkEraklAaalKalee~ 386 (585)
=|+||-.|=..|-.. --..+-+......++..+..+=+....+...+|-.|+.-+.+|.+ - ......+|.+++.
T Consensus 42 m~~i~~e~Ek~i~~~-i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek----~-K~vi~~~k~NEE~ 115 (207)
T PF05010_consen 42 MRKIMEEYEKTIAQM-IEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEK----Q-KEVIEGYKKNEET 115 (207)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHH----H-HHHHHHHHHhHHH
Confidence 345555554444332 122333355566677777777777777777777777766665543 1 1224567777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHH
Q 007907 387 MEEKLRMELEQKENEAESKLKNALELAK---AEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEA-RKSYFAHKL 462 (585)
Q Consensus 387 leeKLr~ELer~~eE~eqkLkqleE~aK---aEI~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~rse~l-r~s~~tQqL 462 (585)
|...+.+-+.+...+- +++..|+.-|. ..-.+.+++-|..+-+.+..|+..|+-.++-+.+....+ .+++....|
T Consensus 116 Lkk~~~ey~~~l~~~e-qry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~EL 194 (207)
T PF05010_consen 116 LKKCIEEYEERLKKEE-QRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEEL 194 (207)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776666666665333 33322222220 013566777777777888888888877777777666433 445567788
Q ss_pred HHHHHHHHHHH
Q 007907 463 ALGALALEDAL 473 (585)
Q Consensus 463 ~lAv~AL~saL 473 (585)
+.-|+-|-+++
T Consensus 195 tkICDeLI~k~ 205 (207)
T PF05010_consen 195 TKICDELISKM 205 (207)
T ss_pred HHHHHHHHHHh
Confidence 88888777665
No 29
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=82.37 E-value=48 Score=31.81 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 327 ELDGRAFAEEKRALKEKYEKELRDSR 352 (585)
Q Consensus 327 e~Da~~~~Eelk~L~ekfEkeLk~~r 352 (585)
-.+|.-..++...+.++|++.+.+++
T Consensus 56 l~~Ae~~~~eA~~~~~e~e~~l~~a~ 81 (173)
T PRK13460 56 INKASELRLEAEALLKDYEARLNSAK 81 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777788888888888733
No 30
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=82.30 E-value=58 Score=33.51 Aligned_cols=63 Identities=22% Similarity=0.263 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 007907 417 IAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARK-SYFAHKLALGALALEDALSRGLPIQKEIDTLYTY 489 (585)
Q Consensus 417 I~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~rse~lr~-s~~tQqL~lAv~AL~saL~sg~PL~~EL~aLke~ 489 (585)
..+.+..||..|+..|...+..++.||..+........+ -..++.+.--+ .||.++++.++.-
T Consensus 40 E~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey----------~~Lk~~in~~R~e 103 (230)
T PF10146_consen 40 EMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEY----------KPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 367799999999999999999999999998775543333 33444444333 3456666666554
No 31
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=82.14 E-value=51 Score=31.95 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 329 DGRAFAEEKRALKEKYEKELRDSR 352 (585)
Q Consensus 329 Da~~~~Eelk~L~ekfEkeLk~~r 352 (585)
||.-..++...+..+|++.+.+++
T Consensus 66 ~Ae~~~~eA~~~~~e~e~~L~~A~ 89 (184)
T CHL00019 66 NSEERREEAIEKLEKARARLRQAE 89 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666677777777777633
No 32
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=82.09 E-value=51 Score=31.90 Aligned_cols=22 Identities=36% Similarity=0.662 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 007907 329 DGRAFAEEKRALKEKYEKELRD 350 (585)
Q Consensus 329 Da~~~~Eelk~L~ekfEkeLk~ 350 (585)
||.-..++...+..+|+..+.+
T Consensus 69 ~Ae~~~~eA~~~l~e~e~~L~~ 90 (184)
T PRK13455 69 EARALREEAQTLLASYERKQRE 90 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666666665
No 33
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.68 E-value=1.5e+02 Score=36.93 Aligned_cols=63 Identities=24% Similarity=0.331 Sum_probs=40.1
Q ss_pred hHHHHHHhcCChhHhhcCCCCHHHHHHHHHHHHhcc----------ccccccCCCCC-------------cHHH------
Q 007907 497 SVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTL----------RHFSLIPPGGG-------------GILT------ 547 (585)
Q Consensus 497 ~LV~aaIsSLPeeA~qrGV~T~~qL~~RF~kV~~~v----------RraSLVPe~gA-------------Gvls------ 547 (585)
.-|.-+|+.|.+.= .++|.-=|..|-..+ -.+.|+|++|. |+|=
T Consensus 1011 ~kI~ktI~~lDe~k-------~~~L~kaw~~VN~dFG~IFs~LLPga~AkL~Ppeg~~~~dGLEvkV~~G~iWKeSL~EL 1083 (1174)
T KOG0933|consen 1011 SKIKKTIEKLDEKK-------REELNKAWEKVNKDFGSIFSTLLPGAMAKLEPPEGKTVLDGLEVKVKFGGIWKESLSEL 1083 (1174)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHhhhHHHHHHHhCCCccccccCCCCCccccceEEEEEeCccHHHHHHHh
Confidence 34555556665442 344555555555444 35789999875 3442
Q ss_pred -------HHHHHHHhhcccccCCCcc
Q 007907 548 -------HSLAHIASWLKVHQVSGLS 566 (585)
Q Consensus 548 -------HalS~v~S~LlFk~~~pis 566 (585)
-++|.++|.|+|+|...--
T Consensus 1084 SGGQRSLVALsLIlamL~fkPAPlYI 1109 (1174)
T KOG0933|consen 1084 SGGQRSLVALSLILAMLKFKPAPLYI 1109 (1174)
T ss_pred cCchHHHHHHHHHHHHHcCCCCceee
Confidence 3789999999999876543
No 34
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=81.51 E-value=55 Score=31.92 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 007907 329 DGRAFAEEKRALKEKYEKELRD 350 (585)
Q Consensus 329 Da~~~~Eelk~L~ekfEkeLk~ 350 (585)
+|....++...+..+|+..|.+
T Consensus 73 ~Ae~~~~eA~~~~~eye~~L~~ 94 (181)
T PRK13454 73 AAEELKQKAVEAEKAYNKALAD 94 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666677777777765
No 35
>PRK12705 hypothetical protein; Provisional
Probab=81.37 E-value=87 Score=35.78 Aligned_cols=41 Identities=22% Similarity=0.187 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHH
Q 007907 335 EEKRALKEKYEKELRDSRAREL-MRTEEAAILEKELKRERAKA 376 (585)
Q Consensus 335 Eelk~L~ekfEkeLk~~ra~El-~~aee~a~lreELEkErakl 376 (585)
++...++.+.|+++++ ++.++ ...+...+-.+.|+++...+
T Consensus 59 ~~~~~~~~~~e~e~~~-~~~~~~~~e~rl~~~e~~l~~~~~~l 100 (508)
T PRK12705 59 ELLLRERNQQRQEARR-EREELQREEERLVQKEEQLDARAEKL 100 (508)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777777776 55555 22222334344444444444
No 36
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=80.99 E-value=1.7e+02 Score=37.09 Aligned_cols=75 Identities=24% Similarity=0.259 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHhc----CCCc
Q 007907 409 ALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEA-----RKSYFAHKLALGALALEDALSR----GLPI 479 (585)
Q Consensus 409 leE~aKaEI~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~rse~l-----r~s~~tQqL~lAv~AL~saL~s----g~PL 479 (585)
.+|....++...|..||..| .++..+...+++-+..|....... ..-+..+++...+..|..+|.. +.-+
T Consensus 697 ~~e~~~~e~~~~lseek~ar-~k~e~~~~~i~~e~e~L~~d~~~~~~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~~r~~~ 775 (1317)
T KOG0612|consen 697 DKEAQMKEIESKLSEEKSAR-EKAENLLLEIEAELEYLSNDYKQSQEKLNELRRSKDQLITEVLKLQSMLEQEISKRLSL 775 (1317)
T ss_pred hHHHHHHHHHHHhcccccHH-HHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34556778899999999998 567887888887777766544211 1122344555666666666652 4455
Q ss_pred HHHHH
Q 007907 480 QKEID 484 (585)
Q Consensus 480 ~~EL~ 484 (585)
.+||.
T Consensus 776 ~~eLs 780 (1317)
T KOG0612|consen 776 QRELK 780 (1317)
T ss_pred HHHhh
Confidence 56655
No 37
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=80.41 E-value=1.4e+02 Score=35.96 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 338 RALKEKYEKELRD-SRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELA 413 (585)
Q Consensus 338 k~L~ekfEkeLk~-~ra~El~~aee~a~lreELEkEraklAaalKalee~leeKLr~ELer~~eE~eqkLkqleE~a 413 (585)
+.|+.+..+.+.. .|+.|..+.+.-..++-|+++--......+...++..+-+||++-+|...|.+..+...+++.
T Consensus 811 qqL~~k~~~q~Eq~~rrFeqE~~~kkr~~d~EmenlErqQkq~iE~~Eq~h~~rlR~eakRir~EQekd~~~Fqe~L 887 (1187)
T KOG0579|consen 811 QQLQAKGIKQVEQQARRFEQEQTNKKRTSDLEMENLERQQKQEIEDTEQAHEHRLRNEAKRIRIEQEKDMRAFQERL 887 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3455555555555 566666555555556666665444444556666676777888888888877777765544444
No 38
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=80.41 E-value=56 Score=31.27 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 329 DGRAFAEEKRALKEKYEKELRDSR 352 (585)
Q Consensus 329 Da~~~~Eelk~L~ekfEkeLk~~r 352 (585)
+|....++...+..+|++.|..++
T Consensus 52 ~Ae~~k~eAe~~~~~~e~~L~~A~ 75 (167)
T PRK14475 52 EAQRLREEAQALLADVKAEREEAE 75 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777778888777633
No 39
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=80.36 E-value=56 Score=31.32 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 327 ELDGRAFAEEKRALKEKYEKELRDSR 352 (585)
Q Consensus 327 e~Da~~~~Eelk~L~ekfEkeLk~~r 352 (585)
-.||....++.+.+..+|++++.++|
T Consensus 46 l~~A~~~~~ea~~~~~~~~~~l~~Ar 71 (161)
T COG0711 46 LAEAERLKEEAQALLAEYEQELEEAR 71 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777778888888888755
No 40
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=79.21 E-value=67 Score=38.18 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=20.4
Q ss_pred cCCCCHHHH--HHHHH--HHHhccccccccCCCCCcHHHH
Q 007907 513 HGTETLLQL--NQKFD--ALKGTLRHFSLIPPGGGGILTH 548 (585)
Q Consensus 513 rGV~T~~qL--~~RF~--kV~~~vRraSLVPe~gAGvlsH 548 (585)
+|-...+.+ .++|- -+..-.+.+-.|.--|-|+|--
T Consensus 699 ~G~~~~eA~~~l~~~ld~a~~~g~~~v~IIHGkGtG~Lr~ 738 (771)
T TIGR01069 699 RGQRSEEALDRLEKFLNDALLAGYEVVLIIHGKGSGKLRK 738 (771)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEEEEcCCChhHHHH
Confidence 444444333 24454 4555667788888766677654
No 41
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=79.21 E-value=66 Score=31.43 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHH
Q 007907 330 GRAFAEEKRALKEKYEKELRDSRARELMRTEE-AAILEKELKRERAKA 376 (585)
Q Consensus 330 a~~~~Eelk~L~ekfEkeLk~~ra~El~~aee-~a~lreELEkErakl 376 (585)
|....++...+..+|+.+|+++|+.--....+ ...+..|.+.++..+
T Consensus 53 Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ 100 (155)
T PRK06569 53 ADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNL 100 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677778888999888855443333333 355555555555555
No 42
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=79.13 E-value=73 Score=31.85 Aligned_cols=27 Identities=11% Similarity=0.139 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 327 ELDGRAFAEEKRALKEKYEKELRDSRA 353 (585)
Q Consensus 327 e~Da~~~~Eelk~L~ekfEkeLk~~ra 353 (585)
-.+|.-..++...+..+|++.+.+++.
T Consensus 88 L~~Ae~~~~eA~~~l~e~e~~L~~A~~ 114 (205)
T PRK06231 88 INQANELKQQAQQLLENAKQRHENALA 114 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777778888888888887443
No 43
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=78.93 E-value=78 Score=32.12 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007907 333 FAEEKRALKEKYEKELRD 350 (585)
Q Consensus 333 ~~Eelk~L~ekfEkeLk~ 350 (585)
..++...+..+|+..+.+
T Consensus 51 ~~~eA~~~~~e~e~~l~~ 68 (246)
T TIGR03321 51 KKREAEQERREYEEKNEE 68 (246)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555566666665
No 44
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=78.89 E-value=73 Score=34.75 Aligned_cols=108 Identities=15% Similarity=0.176 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 007907 332 AFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKM--EEKLRMELEQKENEAESKLKNA 409 (585)
Q Consensus 332 ~~~Eelk~L~ekfEkeLk~~ra~El~~aee~a~lreELEkEraklAaalKalee~l--eeKLr~ELer~~eE~eqkLkql 409 (585)
.+...+.++..+..+.|..+..+|-...+++..+-.||....++++...+.+.+.- =..+..+|.+..++.++--+++
T Consensus 238 ~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~em 317 (359)
T PF10498_consen 238 ETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEM 317 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678899999999999999999999999999999999888888855433333321 1234456666666665555556
Q ss_pred HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 410 LELA--------KAEIAASIAREKVAQIEKMAEANLHINALC 443 (585)
Q Consensus 410 eE~a--------KaEI~eaVe~ER~gRLaKL~EL~~~V~aLE 443 (585)
+|+. ...|+.+|.+=|. .+.+|+.+|.=|+
T Consensus 318 eerg~~mtD~sPlv~IKqAl~kLk~----EI~qMdvrIGVle 355 (359)
T PF10498_consen 318 EERGSSMTDGSPLVKIKQALTKLKQ----EIKQMDVRIGVLE 355 (359)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHH----HHHHhhhhhheeh
Confidence 5553 2335555544332 3555555555444
No 45
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=78.78 E-value=1.7e+02 Score=35.84 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 007907 453 ARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYT 488 (585)
Q Consensus 453 lr~s~~tQqL~lAv~AL~saL~sg~PL~~EL~aLke 488 (585)
.+...++..|..-+.++.+.+.+.+....|+..||-
T Consensus 455 rraIeQcnemv~rir~l~~sle~qrKVeqe~emlKa 490 (1265)
T KOG0976|consen 455 RRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKA 490 (1265)
T ss_pred hhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHH
Confidence 344456777777788888888877766666666654
No 46
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=78.66 E-value=65 Score=31.04 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 329 DGRAFAEEKRALKEKYEKELRDSRAR 354 (585)
Q Consensus 329 Da~~~~Eelk~L~ekfEkeLk~~ra~ 354 (585)
+|....++...+.++|+..+.+++..
T Consensus 60 ~Ae~~~~eA~~~~~e~e~~l~~a~~e 85 (173)
T PRK13453 60 DAEQAKLNAQKLEEENKQKLKETQEE 85 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777888888999988874433
No 47
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=77.82 E-value=2.1e+02 Score=36.41 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=10.9
Q ss_pred HhHHHHHHHHHHHhh
Q 007907 311 VLDFLQAIHAAEQRQ 325 (585)
Q Consensus 311 ~~d~~~aih~ae~~Q 325 (585)
+=++.+|+.+|.+-|
T Consensus 1565 ae~V~eaL~~Ad~Aq 1579 (1758)
T KOG0994|consen 1565 AEDVVEALEEADVAQ 1579 (1758)
T ss_pred HHHHHHHHHHHHHHH
Confidence 557778888887754
No 48
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=77.70 E-value=2.5e+02 Score=37.25 Aligned_cols=128 Identities=22% Similarity=0.285 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH--------------HHHHHHH--HHHH
Q 007907 360 EEAAILEKELKRERAKAAATIKSLQEKME------EKLRMELEQKENEAESKL--------------KNALELA--KAEI 417 (585)
Q Consensus 360 ee~a~lreELEkEraklAaalKalee~le------eKLr~ELer~~eE~eqkL--------------kqleE~a--KaEI 417 (585)
++....+-|+|+.+.++..+++.+++... +.+.+++..++.+..+-. +++.+.. +.++
T Consensus 1030 e~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el 1109 (1930)
T KOG0161|consen 1030 EREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKEL 1109 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33355566777777777666665555543 123333333332222211 1122211 5678
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHH
Q 007907 418 AASIAREKVAQIE---KMAEANLHINALCMAFYAR-SEEARKSYFAHKLALGALALEDALSR-GLPIQKEIDTLY 487 (585)
Q Consensus 418 ~eaVe~ER~gRLa---KL~EL~~~V~aLE~Al~~r-se~lr~s~~tQqL~lAv~AL~saL~s-g~PL~~EL~aLk 487 (585)
.+.++.||+.|-+ +..+|...+.+|..=+..- ...........+.+.-+.-++..+.. .......+..|+
T Consensus 1110 ~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr 1184 (1930)
T KOG0161|consen 1110 EEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELR 1184 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 8888888887632 2333333333333333332 11222222233334445555555542 233344444444
No 49
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=77.11 E-value=83 Score=31.44 Aligned_cols=16 Identities=25% Similarity=0.146 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 007907 335 EEKRALKEKYEKELRD 350 (585)
Q Consensus 335 Eelk~L~ekfEkeLk~ 350 (585)
..+...++.....+.+
T Consensus 75 ~~L~~R~~~I~~~L~~ 90 (205)
T PRK06231 75 RFLNKRKELIEAEINQ 90 (205)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444444
No 50
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=77.02 E-value=1.4e+02 Score=34.00 Aligned_cols=8 Identities=38% Similarity=0.916 Sum_probs=6.1
Q ss_pred CcHHHHHH
Q 007907 478 PIQKEIDT 485 (585)
Q Consensus 478 PL~~EL~a 485 (585)
|+++|+..
T Consensus 254 p~rreia~ 261 (514)
T TIGR03319 254 PVRREIAR 261 (514)
T ss_pred hHHHHHHH
Confidence 88888874
No 51
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=76.92 E-value=93 Score=31.90 Aligned_cols=16 Identities=38% Similarity=0.605 Sum_probs=12.2
Q ss_pred CCcHHHHHHHHHhhcC
Q 007907 477 LPIQKEIDTLYTYLDG 492 (585)
Q Consensus 477 ~PL~~EL~aLke~A~g 492 (585)
..|..||.+-+.+..|
T Consensus 293 ~~Ld~EIatYR~LLEg 308 (312)
T PF00038_consen 293 LALDAEIATYRKLLEG 308 (312)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HhHHHHHHHHHHHHhC
Confidence 4468888888888765
No 52
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=76.87 E-value=1.4e+02 Score=35.39 Aligned_cols=106 Identities=14% Similarity=0.157 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 007907 409 ALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYT 488 (585)
Q Consensus 409 leE~aKaEI~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~rse~lr~s~~tQqL~lAv~AL~saL~sg~PL~~EL~aLke 488 (585)
++|.++. .-..|++||..+-.+|..-.+.|.-|-.-....+.+.++-+.+ +++.....|.-.......||.
T Consensus 211 ~qevn~~-kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~--------lv~~~~~d~e~~~~rd~~lk~ 281 (861)
T KOG1899|consen 211 MQEVNQS-KVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRT--------LVQRLMADGEHKSLRDNTLKN 281 (861)
T ss_pred HHHHHHH-HHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHH--------HHHHHhhcccchhhHHHHHHH
Confidence 3444432 4566889999998888888777777766655555444443332 112222233333333446655
Q ss_pred hhcCCCCchHHHHHHhcCChhHhhcCCCCHHHHHHHHHHHHhcccc
Q 007907 489 YLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRH 534 (585)
Q Consensus 489 ~A~g~~~D~LV~aaIsSLPeeA~qrGV~T~~qL~~RF~kV~~~vRr 534 (585)
+. |+++.+ .+-.++-+-+.-++.++|++++.++|=
T Consensus 282 a~-----eslm~a------ne~kdr~ie~lr~~ln~y~k~~~iv~i 316 (861)
T KOG1899|consen 282 AL-----ESLMRA------NEQKDRFIESLRNYLNNYDKNAQIVRI 316 (861)
T ss_pred HH-----HHHHhh------chhhhhHHHHHHHHhhhhhhhhhhhhh
Confidence 44 233322 234566777788899999999988764
No 53
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=76.60 E-value=92 Score=37.07 Aligned_cols=64 Identities=22% Similarity=0.288 Sum_probs=35.2
Q ss_pred HHHHHHHHhhhhhh--HHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007907 316 QAIHAAEQRQAELD--GRAFAEEKRALKEKYEKELRD-SRARELMRTEEAAILEKELKRERAKAAAT 379 (585)
Q Consensus 316 ~aih~ae~~Qae~D--a~~~~Eelk~L~ekfEkeLk~-~ra~El~~aee~a~lreELEkEraklAaa 379 (585)
.=+.+|++-+.+.+ +.-+..++...++.|++.|.+ +..+|....++++...+-|...+.+++.+
T Consensus 542 ~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alqekvsevEsrl~E~L~~~E~rLNeARREHtKa 608 (739)
T PF07111_consen 542 EQLEAARKSLQESTEEAAELRRELTQQQEVYERALQEKVSEVESRLREQLSEMEKRLNEARREHTKA 608 (739)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555444 334555666666666666665 45555566666666665555545444333
No 54
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=76.36 E-value=1.4e+02 Score=33.54 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007907 418 AASIAREKVAQIEKMAEANLHINALCMAFYARSEEARK 455 (585)
Q Consensus 418 ~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~rse~lr~ 455 (585)
+.++.+||.+-...|++-...++.|.+.++-.+..++.
T Consensus 351 KaaLrkerd~L~keLeekkreleql~~q~~v~~saLdt 388 (442)
T PF06637_consen 351 KAALRKERDSLAKELEEKKRELEQLKMQLAVKTSALDT 388 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 46788999999999999888888888877766655443
No 55
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=76.29 E-value=2.7e+02 Score=36.94 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=22.5
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 321 AEQRQAELDGRAFAEEKRALKEKYEKELRDSRARE 355 (585)
Q Consensus 321 ae~~Qae~Da~~~~Eelk~L~ekfEkeLk~~ra~E 355 (585)
.|+..++....-+.+++..+.+.+.+-.++-+..|
T Consensus 957 ~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lE 991 (1930)
T KOG0161|consen 957 LEKNAAENKLKNLEEEINSLDENISKLSKEKKELE 991 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666777777777777777666633333
No 56
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=75.95 E-value=2.1e+02 Score=35.43 Aligned_cols=23 Identities=17% Similarity=-0.052 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Q 007907 435 ANLHINALCMAFYARSEEARKSY 457 (585)
Q Consensus 435 L~~~V~aLE~Al~~rse~lr~s~ 457 (585)
....++.|++....|-+.+.+.|
T Consensus 1133 ~V~e~krL~~~~~k~~e~L~k~~ 1155 (1189)
T KOG1265|consen 1133 FVEERKRLAEKQSKRQEQLVKKH 1155 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555444444
No 57
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=75.57 E-value=1.6e+02 Score=35.25 Aligned_cols=7 Identities=29% Similarity=0.411 Sum_probs=3.4
Q ss_pred HHHHHHH
Q 007907 317 AIHAAEQ 323 (585)
Q Consensus 317 aih~ae~ 323 (585)
||+-|++
T Consensus 485 a~~iA~~ 491 (771)
T TIGR01069 485 AFEIAQR 491 (771)
T ss_pred HHHHHHH
Confidence 5555543
No 58
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=75.36 E-value=84 Score=30.65 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007907 417 IAASIAREKVAQIEKMAEANLH 438 (585)
Q Consensus 417 I~eaVe~ER~gRLaKL~EL~~~ 438 (585)
....++++|..-+..|..+...
T Consensus 132 a~~~I~~~k~~a~~~l~~~a~~ 153 (181)
T PRK13454 132 SEKRIAEIRAGALESVEEVAKD 153 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777665555444333
No 59
>PRK00106 hypothetical protein; Provisional
Probab=75.01 E-value=1.5e+02 Score=34.30 Aligned_cols=8 Identities=50% Similarity=0.953 Sum_probs=6.1
Q ss_pred CcHHHHHH
Q 007907 478 PIQKEIDT 485 (585)
Q Consensus 478 PL~~EL~a 485 (585)
|+++|+..
T Consensus 275 pvRReiAr 282 (535)
T PRK00106 275 PIRREIAR 282 (535)
T ss_pred hHHHHHHH
Confidence 88888874
No 60
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=74.59 E-value=1.2e+02 Score=32.22 Aligned_cols=77 Identities=22% Similarity=0.316 Sum_probs=40.8
Q ss_pred hhHhhhhcccccCCCchHhHHHHHHHHHHHhhhhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 007907 294 NVMEELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDG-------RAFAEEKRALKEKYEKELRDSRARELMRTEEAAILE 366 (585)
Q Consensus 294 ~~~e~~~~~~~~~dgk~~~d~~~aih~ae~~Qae~Da-------~~~~Eelk~L~ekfEkeLk~~ra~El~~aee~a~lr 366 (585)
-+..+|+. |.+.|-|||++.-=.. -+|+|..+ +.-.-.+...+..||..-+- ...+-.+..+-++++
T Consensus 39 kAlrel~~---S~~Ak~afel~k~QE~--TkQ~E~~ak~~e~ea~~~q~~~e~~rv~~EE~Rkt-~~~q~q~~~q~aqY~ 112 (276)
T PF12037_consen 39 KALRELNS---SPHAKKAFELMKKQEE--TKQAELQAKIAEYEAAQAQAEIERQRVEAEERRKT-LQQQTQQKQQRAQYE 112 (276)
T ss_pred HHHHHHhc---ChhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 56667765 6777889998754332 23555543 33333344444444443332 122224444446777
Q ss_pred HHHHHHHHHH
Q 007907 367 KELKRERAKA 376 (585)
Q Consensus 367 eELEkErakl 376 (585)
.+|++.+..-
T Consensus 113 D~LaRkR~~~ 122 (276)
T PF12037_consen 113 DELARKRYQD 122 (276)
T ss_pred HHHHHHHHHH
Confidence 7777766543
No 61
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=73.87 E-value=82 Score=29.81 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007907 330 GRAFAEEKRALKEKYEKELRD 350 (585)
Q Consensus 330 a~~~~Eelk~L~ekfEkeLk~ 350 (585)
|.-..++...+.++|+..|.+
T Consensus 65 Ae~~~~ea~~~~~e~e~~L~~ 85 (156)
T CHL00118 65 ASEILAKANELTKQYEQELSK 85 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555554
No 62
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=73.36 E-value=2.5e+02 Score=35.12 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=15.7
Q ss_pred hhcCCCCHHHHHHHHHHHHhc
Q 007907 511 RYHGTETLLQLNQKFDALKGT 531 (585)
Q Consensus 511 ~qrGV~T~~qL~~RF~kV~~~ 531 (585)
...|.++..-|..++.++..+
T Consensus 901 ~~~~~l~~kkle~e~~~~~~e 921 (1174)
T KOG0933|consen 901 KSDGELERKKLEHEVTKLESE 921 (1174)
T ss_pred hhcccchHHHHHhHHHHhhhh
Confidence 456788888888888777654
No 63
>PF15556 Zwint: ZW10 interactor
Probab=73.31 E-value=1.2e+02 Score=31.48 Aligned_cols=140 Identities=22% Similarity=0.304 Sum_probs=76.3
Q ss_pred HhHHHHHHHHHHHhhhhhh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007907 311 VLDFLQAIHAAEQRQAELD-----------GRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAAT 379 (585)
Q Consensus 311 ~~d~~~aih~ae~~Qae~D-----------a~~~~Eelk~L~ekfEkeLk~~ra~El~~aee~a~lreELEkEraklAaa 379 (585)
|+||++.+-+-+----..| |-+..++-+.|+..|...+..++. ...+...+++ |-.+.+..+..+
T Consensus 31 VvdFLqnFLaqed~~QgldpLaSedtsRqkai~aKeQWKeLKAtYqehVEaIk~---alt~aL~q~e-EaqrK~~qLqeA 106 (252)
T PF15556_consen 31 VVDFLQNFLAQEDTAQGLDPLASEDTSRQKAIEAKEQWKELKATYQEHVEAIKS---ALTQALPQVE-EAQRKRTQLQEA 106 (252)
T ss_pred HHHHHHHHHhcCcccccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHHHH
Confidence 7899988866443322222 445667888889999887776332 2233333322 223333333333
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 007907 380 IKSLQ---EKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKS 456 (585)
Q Consensus 380 lKale---e~leeKLr~ELer~~eE~eqkLkqleE~aKaEI~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~rse~lr~s 456 (585)
+..++ +.+.+|++..-+.-.-..+.+|+.+ +++...|..-..|...+|+.+...|+.|..-...+.+-+-++
T Consensus 107 ~eqlqaKKqva~eK~r~AQkqwqlqQeK~LQ~L-----ae~sAEvrerq~~~qqeLe~l~qeL~~lkqQa~qeqdKLQR~ 181 (252)
T PF15556_consen 107 LEQLQAKKQVAMEKLRAAQKQWQLQQEKHLQHL-----AEVSAEVRERQTGTQQELERLYQELGTLKQQAGQEQDKLQRH 181 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222 2244555544443332222333222 334555555567778888888888888877766666555554
Q ss_pred HHH
Q 007907 457 YFA 459 (585)
Q Consensus 457 ~~t 459 (585)
...
T Consensus 182 qtf 184 (252)
T PF15556_consen 182 QTF 184 (252)
T ss_pred HHH
Confidence 443
No 64
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=72.49 E-value=1.2e+02 Score=31.18 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 007907 329 DGRAFAEEKRALKEKYEKELRD 350 (585)
Q Consensus 329 Da~~~~Eelk~L~ekfEkeLk~ 350 (585)
||....++-..+.++|++.+.+
T Consensus 47 ~Ae~~~~eA~~~~~e~e~~l~~ 68 (250)
T PRK14474 47 DAEQRQQEAGQEAERYRQKQQS 68 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566667777888887776
No 65
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.23 E-value=1.8e+02 Score=32.97 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 370 KRERAKAAATIKSLQEKMEEKLRMELEQKENEAES--KLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALC 443 (585)
Q Consensus 370 EkEraklAaalKalee~leeKLr~ELer~~eE~eq--kLkqleE~aKaEI~eaVe~ER~gRLaKL~EL~~~V~aLE 443 (585)
.++++-+...++.+...+.+.|++.++-...+-+. ....+.-.+...+.+.++.||.....+|.+.+..|+-.+
T Consensus 113 dke~~~le~~L~~~~~e~~~~lq~~~e~~~kkre~~k~~~~l~~~~ekK~e~sLe~eR~k~~~ql~~~~~~~e~~e 188 (438)
T COG4487 113 DKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLEFKE 188 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45555555566666666666666644433322221 111222222445667799999999999999876665543
No 66
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=71.53 E-value=93 Score=29.43 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 328 LDGRAFAEEKRALKEKYEKELRDSRA 353 (585)
Q Consensus 328 ~Da~~~~Eelk~L~ekfEkeLk~~ra 353 (585)
.+|....++...+..+|+..+.++|.
T Consensus 49 ~~Ae~~~~ea~~~~~e~e~~l~~A~~ 74 (164)
T PRK14473 49 RDAEKVREQLANAKRDYEAELAKARQ 74 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677778888888888887443
No 67
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=69.75 E-value=2.2e+02 Score=33.07 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=25.0
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007907 322 EQRQAELDGRAFAEEKRALKEKYEKELRD 350 (585)
Q Consensus 322 e~~Qae~Da~~~~Eelk~L~ekfEkeLk~ 350 (585)
++-.++.|..-+.+++..++.+|++..+.
T Consensus 107 ~ra~~e~ei~kl~~e~~elr~~~~~~~k~ 135 (546)
T KOG0977|consen 107 ERAKLEIEITKLREELKELRKKLEKAEKE 135 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 66677888888999999999999998776
No 68
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=69.51 E-value=1e+02 Score=28.97 Aligned_cols=19 Identities=11% Similarity=-0.057 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007907 429 IEKMAEANLHINALCMAFY 447 (585)
Q Consensus 429 LaKL~EL~~~V~aLE~Al~ 447 (585)
..-+.+|..++..|...+.
T Consensus 117 ~~~~~~l~~qv~~~~~~~~ 135 (141)
T PRK08476 117 QELKEQLLSQMPEFKEALN 135 (141)
T ss_pred HHHHHHHHHhHHHHHHHHH
Confidence 3445566666666655443
No 69
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=69.41 E-value=1.7e+02 Score=31.61 Aligned_cols=14 Identities=7% Similarity=-0.007 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhHH
Q 007907 438 HINALCMAFYARSE 451 (585)
Q Consensus 438 ~V~aLE~Al~~rse 451 (585)
-+.++..++..|.+
T Consensus 149 w~~G~~~a~~~y~d 162 (332)
T TIGR01541 149 WLAGARSGLADYGE 162 (332)
T ss_pred HHHHHHHHHHHHHH
Confidence 34556666666554
No 70
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=67.37 E-value=1.8e+02 Score=35.40 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=18.5
Q ss_pred cccCCCCCCccchhHH------HhhhccccCCCCCCcc
Q 007907 118 VFSHSDEEPKTSISAV------EQAMQSVEPHKDIRQP 149 (585)
Q Consensus 118 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 149 (585)
+|.--||+.+.+.+.+ .+..++-|-..|+|.-
T Consensus 526 ifdlLDEEaklP~~s~qhFT~~vHe~~k~HfRL~~PRk 563 (1259)
T KOG0163|consen 526 IFDLLDEEAKLPKPSYQHFTARVHESNKNHFRLDLPRK 563 (1259)
T ss_pred hhhhhhhhccCCCcchHHHHHHHHHhhhcceeecCCch
Confidence 4555666666665444 3445555666666654
No 71
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=67.20 E-value=1.3e+02 Score=32.07 Aligned_cols=14 Identities=14% Similarity=0.237 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHH
Q 007907 328 LDGRAFAEEKRALK 341 (585)
Q Consensus 328 ~Da~~~~Eelk~L~ 341 (585)
.+-..|..-++.+.
T Consensus 23 ~E~~~Y~~fL~~l~ 36 (314)
T PF04111_consen 23 KERDTYQEFLKKLE 36 (314)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 34444455555554
No 72
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=67.09 E-value=2.4e+02 Score=32.48 Aligned_cols=52 Identities=15% Similarity=0.084 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 007907 415 AEIAASIAREKVAQIEKMAEANLHIN-ALCMAFYARSEEARKSYFAHKLALGA 466 (585)
Q Consensus 415 aEI~eaVe~ER~gRLaKL~EL~~~V~-aLE~Al~~rse~lr~s~~tQqL~lAv 466 (585)
+-|..+...||..-++.+.-....+. +|...+.+|+.....---+..|+.++
T Consensus 243 r~l~~~~n~eRekwl~aInTtf~higgG~r~~ltD~~Kli~tVgGlTaLAaGv 295 (630)
T KOG0742|consen 243 RQLRLKANEEREKWLEAINTTFTHIGGGLRAFLTDWNKLIATVGGLTALAAGV 295 (630)
T ss_pred HHHHHHhhhHHHHHHHHHhhhHHHhhhHHHHHhhhhHhHHHHhhhHHHHHhhh
Confidence 33666677777777777777766664 57777777887766666666665543
No 73
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=66.91 E-value=1.6e+02 Score=30.43 Aligned_cols=127 Identities=12% Similarity=0.126 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 312 LDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEA-AILEKELKRERAKAAATIKSLQEKMEEK 390 (585)
Q Consensus 312 ~d~~~aih~ae~~Qae~Da~~~~Eelk~L~ekfEkeLk~~ra~El~~aee~-a~lreELEkEraklAaalKalee~leeK 390 (585)
+|+|+=|..=++.-|.+|-. |++.|+.|-.+|.+.-+. ++.++--. .-|. ++=.++..++.+.+...+.+...
T Consensus 18 i~lLE~i~~f~~eRakiEkE-YA~~L~~L~kq~~kk~~~----~~~~~s~v~~sW~-~vl~qte~iA~~~~~~aE~l~~~ 91 (234)
T cd07686 18 LRLLETVKKFMALRVKSDKE-YASTLQNLCNQVDKESTS----QLDYVSNVSKSWL-HMVQQTEQLSKIMKTHAEELNSG 91 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcccCcc----cccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH
Confidence 59999999999999999988 999999999998554332 12222221 2233 34455666677777777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 007907 391 LRMELEQKENEAESKLKNALELAKAEIAASIAREKVA-QIEKMAEANLHINALCMAFYAR 449 (585)
Q Consensus 391 Lr~ELer~~eE~eqkLkqleE~aKaEI~eaVe~ER~g-RLaKL~EL~~~V~aLE~Al~~r 449 (585)
+-.+|..+..+..+--+.. .++.+++.+||.. ....|..+..+=..+|......
T Consensus 92 i~~~l~~l~~~~~~~~k~~-----~~~~~kl~~e~~~~~~~~l~K~K~~Y~~~~~~~e~a 146 (234)
T cd07686 92 PLHRLTMMIKDKQQVKKSY-----IGVHQQIEAEMYKVTKTELEKLKCSYRQLTKEVNSA 146 (234)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8888877754442222233 3356678888875 6677777777777777665543
No 74
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=66.90 E-value=2.1e+02 Score=31.82 Aligned_cols=92 Identities=17% Similarity=0.268 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhhhhhHH--HHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 315 LQAIHAAEQRQAELDGR--AFAEEKRALKEKYEKELRDSRAR-ELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKL 391 (585)
Q Consensus 315 ~~aih~ae~~Qae~Da~--~~~Eelk~L~ekfEkeLk~~ra~-El~~aee~a~lreELEkEraklAaalKalee~leeKL 391 (585)
.+.|..|++-+.++... .|.+.+...+.+-..-+.+++.. +....+..++.++|.++.+......+...++++.+.+
T Consensus 38 ~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a~~el 117 (445)
T PRK13428 38 RQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRAQLTRQL 117 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666544443332 23334444444433333331111 1123333355555555555555556666666666666
Q ss_pred HHHHHHHHHHHHHHH
Q 007907 392 RMELEQKENEAESKL 406 (585)
Q Consensus 392 r~ELer~~eE~eqkL 406 (585)
+.++..+..+...++
T Consensus 118 r~ei~~lAv~~A~ki 132 (445)
T PRK13428 118 RLELGHESVRQAGEL 132 (445)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666665554444
No 75
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=66.88 E-value=1.7e+02 Score=30.53 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHhchhhhhhh
Q 007907 64 GATVVVGVGLIAYQNGYLDQYID 86 (585)
Q Consensus 64 g~~~v~~~~~~ayq~g~ld~~~~ 86 (585)
||..|-|-.|+.+=.-|+|-+-.
T Consensus 1 gG~~vtG~~L~~L~~~Yv~aIn~ 23 (297)
T PF02841_consen 1 GGITVTGPMLAELVKSYVDAINS 23 (297)
T ss_dssp TSEB-BHHHHHHHHHHHHHHHHT
T ss_pred CCcccccHHHHHHHHHHHHHHhC
Confidence 66667777766555555554433
No 76
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=66.81 E-value=2.8e+02 Score=33.18 Aligned_cols=6 Identities=33% Similarity=0.368 Sum_probs=2.8
Q ss_pred HHHHHH
Q 007907 317 AIHAAE 322 (585)
Q Consensus 317 aih~ae 322 (585)
||+-|+
T Consensus 490 a~~iA~ 495 (782)
T PRK00409 490 AFEIAK 495 (782)
T ss_pred HHHHHH
Confidence 444443
No 77
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=66.41 E-value=1.3e+02 Score=28.96 Aligned_cols=21 Identities=5% Similarity=0.031 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007907 330 GRAFAEEKRALKEKYEKELRD 350 (585)
Q Consensus 330 a~~~~Eelk~L~ekfEkeLk~ 350 (585)
|....++...+..+|+..|.+
T Consensus 62 A~~~~~ea~~~~~~~~~~L~~ 82 (174)
T PRK07352 62 AEERLRQAAQALAEAQQKLAQ 82 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555556666666655
No 78
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=66.05 E-value=2.4e+02 Score=33.61 Aligned_cols=14 Identities=7% Similarity=0.131 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHH
Q 007907 431 KMAEANLHINALCM 444 (585)
Q Consensus 431 KL~EL~~~V~aLE~ 444 (585)
.|..+..++++|..
T Consensus 640 EL~~~~~~l~~l~~ 653 (717)
T PF10168_consen 640 ELERMKDQLQDLKA 653 (717)
T ss_pred HHHHHHHHHHHHHH
Confidence 35555555555443
No 79
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=65.54 E-value=1.4e+02 Score=29.22 Aligned_cols=51 Identities=25% Similarity=0.311 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 363 AILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELA 413 (585)
Q Consensus 363 a~lreELEkEraklAaalKalee~leeKLr~ELer~~eE~eqkLkqleE~a 413 (585)
..++++++++.++.........+..-+++..+........++.|+.+..+.
T Consensus 61 e~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~ 111 (155)
T PRK06569 61 EKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQN 111 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444442222333333344444444444444455554444444
No 80
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=65.53 E-value=1.2e+02 Score=28.60 Aligned_cols=16 Identities=38% Similarity=0.422 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 007907 361 EAAILEKELKRERAKA 376 (585)
Q Consensus 361 e~a~lreELEkErakl 376 (585)
++..+..|+++...+.
T Consensus 71 ea~~~~~e~e~~L~~A 86 (156)
T CHL00118 71 KANELTKQYEQELSKA 86 (156)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444555544444
No 81
>PRK02224 chromosome segregation protein; Provisional
Probab=65.50 E-value=2.8e+02 Score=32.69 Aligned_cols=19 Identities=16% Similarity=0.233 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007907 331 RAFAEEKRALKEKYEKELR 349 (585)
Q Consensus 331 ~~~~Eelk~L~ekfEkeLk 349 (585)
..+.+++..|...++.-.+
T Consensus 540 ~~l~~e~~~l~~~~~~~~~ 558 (880)
T PRK02224 540 EELRERAAELEAEAEEKRE 558 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544333
No 82
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=65.49 E-value=99 Score=27.45 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=18.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 326 AELDGRAFAEEKRALKEKYEKELRDSR 352 (585)
Q Consensus 326 ae~Da~~~~Eelk~L~ekfEkeLk~~r 352 (585)
...+|....++...+..+|+..+.+++
T Consensus 38 ~~~~a~~~~~ea~~~~~e~~~~l~~a~ 64 (132)
T PF00430_consen 38 ELEEAEELKEEAEQLLAEYEEKLAEAR 64 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666777777888888887633
No 83
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=65.30 E-value=1.3e+02 Score=28.83 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 007907 329 DGRAFAEEKRALKEKYEKELRD 350 (585)
Q Consensus 329 Da~~~~Eelk~L~ekfEkeLk~ 350 (585)
+|....++...+.++|+..+.+
T Consensus 60 ~Ae~~~~eA~~~~~e~e~~L~~ 81 (175)
T PRK14472 60 RAHSAKDEAEAILRKNRELLAK 81 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666777777666
No 84
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=64.80 E-value=2.1e+02 Score=30.90 Aligned_cols=123 Identities=17% Similarity=0.226 Sum_probs=62.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH------HHHHHHHHH
Q 007907 325 QAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKA--AATIKSLQEKM------EEKLRMELE 396 (585)
Q Consensus 325 Qae~Da~~~~Eelk~L~ekfEkeLk~~ra~El~~aee~a~lreELEkErakl--AaalKalee~l------eeKLr~ELe 396 (585)
....|.......++.|.-.|+...-. -+.|-........|+++|+...... +..++.+.... -..++++++
T Consensus 104 ~~~~~~~~ler~i~~Le~~~~T~~L~-~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~ 182 (294)
T COG1340 104 LGGRSIKSLEREIERLEKKQQTSVLT-PEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQ 182 (294)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666677776666654433 3334455666666777776655433 22222222221 124555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 007907 397 QKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARS 450 (585)
Q Consensus 397 r~~eE~eqkLkqleE~aKaEI~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~rs 450 (585)
.+.++++.--.++.+.... .+.|-.+.++.-.++-++..+++.+...|....
T Consensus 183 ~la~eaqe~he~m~k~~~~--~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~ 234 (294)
T COG1340 183 ELANEAQEYHEEMIKLFEE--ADELRKEADELHEEFVELSKKIDELHEEFRNLQ 234 (294)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6666665544444443322 344455555555555555555555555544433
No 85
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=64.40 E-value=3.2e+02 Score=32.86 Aligned_cols=116 Identities=23% Similarity=0.224 Sum_probs=60.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHH
Q 007907 326 AELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKME----------EKLRMEL 395 (585)
Q Consensus 326 ae~Da~~~~Eelk~L~ekfEkeLk~~ra~El~~aee~a~lreELEkEraklAaalKalee~le----------eKLr~EL 395 (585)
++.|..+..+++=+|+.---.. -|+.+-||-=|+.-+.-...+|-.+..+|+ .|||+||
T Consensus 581 ~d~d~e~l~eqilKLKSLLSTK-----------REQIaTLRTVLKANKqTAEvALanLKsKYE~EK~~v~etm~kLRnEL 649 (717)
T PF09730_consen 581 ADKDKEELQEQILKLKSLLSTK-----------REQIATLRTVLKANKQTAEVALANLKSKYENEKAMVSETMMKLRNEL 649 (717)
T ss_pred ccccHHHhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 3667777777766665433222 123333333333333222223333333333 3788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007907 396 EQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKL 462 (585)
Q Consensus 396 er~~eE~eqkLkqleE~aKaEI~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~rse~lr~s~~tQqL 462 (585)
+.+++.+.--- .++.--+.==..+..+|++|..++.+-|.==.-.|..+|.+.+ |+|
T Consensus 650 K~LKEDAATFs---------SlRamFa~RCdEYvtQldemqrqL~aAEdEKKTLNsLLRmAIQ-QKL 706 (717)
T PF09730_consen 650 KALKEDAATFS---------SLRAMFAARCDEYVTQLDEMQRQLAAAEDEKKTLNSLLRMAIQ-QKL 706 (717)
T ss_pred HHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHH
Confidence 77765543221 1222233333456777888888888887766666666666554 444
No 86
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=64.23 E-value=3.5e+02 Score=33.25 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=9.3
Q ss_pred HhccccccccCCCC
Q 007907 529 KGTLRHFSLIPPGG 542 (585)
Q Consensus 529 ~~~vRraSLVPe~g 542 (585)
+..-|+.--+||+-
T Consensus 1106 KskN~~~~~~~~~R 1119 (1259)
T KOG0163|consen 1106 KSKNRKRTTMPENR 1119 (1259)
T ss_pred HhcCCccCCCCccc
Confidence 44556667789884
No 87
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=63.36 E-value=3.6e+02 Score=33.22 Aligned_cols=78 Identities=23% Similarity=0.239 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 368 ELKRERAKAAATIKSLQEKME--EKLRMELEQKENEAESKLKNALEL--AKAEIAASIAREKVAQIEKMAEANLHINALC 443 (585)
Q Consensus 368 ELEkEraklAaalKalee~le--eKLr~ELer~~eE~eqkLkqleE~--aKaEI~eaVe~ER~gRLaKL~EL~~~V~aLE 443 (585)
++.++++.+.-+|+...-+++ ....++|+.+.-.+......+++. +..+....+-.+-+.|-.+++++..+|-+|+
T Consensus 327 kltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e 406 (1265)
T KOG0976|consen 327 KLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLE 406 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344444444334433333322 244556666655555554433332 2334555666777777888888888888888
Q ss_pred HH
Q 007907 444 MA 445 (585)
Q Consensus 444 ~A 445 (585)
..
T Consensus 407 ~~ 408 (1265)
T KOG0976|consen 407 QG 408 (1265)
T ss_pred hc
Confidence 76
No 88
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=63.23 E-value=1.4e+02 Score=31.04 Aligned_cols=25 Identities=16% Similarity=-0.012 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 419 ASIAREKVAQIEKMAEANLHINALC 443 (585)
Q Consensus 419 eaVe~ER~gRLaKL~EL~~~V~aLE 443 (585)
+.-..-+.++-.++..|...|+.|.
T Consensus 273 eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 273 EQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333446677777888888887763
No 89
>PRK00106 hypothetical protein; Provisional
Probab=63.11 E-value=2.9e+02 Score=31.98 Aligned_cols=13 Identities=38% Similarity=0.544 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 007907 360 EEAAILEKELKRE 372 (585)
Q Consensus 360 ee~a~lreELEkE 372 (585)
+++.+.+.|++++
T Consensus 79 eEi~~~R~ElEke 91 (535)
T PRK00106 79 EEARKYREEIEQE 91 (535)
T ss_pred HHHHHHHHHHHHH
Confidence 4444455555544
No 90
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=62.47 E-value=1.3e+02 Score=27.58 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 328 LDGRAFAEEKRALKEKYEKELRDSRA 353 (585)
Q Consensus 328 ~Da~~~~Eelk~L~ekfEkeLk~~ra 353 (585)
.+|....++...+..+|+..|.+++.
T Consensus 46 ~~Ae~~~~ea~~~~~~~e~~L~~a~~ 71 (140)
T PRK07353 46 AEAKERLAEAEKLEAQYEQQLASARK 71 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777778888888887443
No 91
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=61.69 E-value=1.2e+02 Score=26.99 Aligned_cols=10 Identities=20% Similarity=0.155 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 007907 366 EKELKRERAK 375 (585)
Q Consensus 366 reELEkErak 375 (585)
..++++...+
T Consensus 53 ~~e~~~~l~~ 62 (132)
T PF00430_consen 53 LAEYEEKLAE 62 (132)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 92
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=59.92 E-value=1.6e+02 Score=27.81 Aligned_cols=26 Identities=19% Similarity=0.468 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 328 LDGRAFAEEKRALKEKYEKELRDSRA 353 (585)
Q Consensus 328 ~Da~~~~Eelk~L~ekfEkeLk~~ra 353 (585)
.+|....++...+..+|+..|.+++.
T Consensus 43 ~~Ae~~~~eA~~~~~~~e~~L~~A~~ 68 (159)
T PRK09173 43 AEARRLREEAQQLLAEYQRKRKEAEK 68 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777888888888887443
No 93
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=59.86 E-value=2.1e+02 Score=29.43 Aligned_cols=14 Identities=21% Similarity=0.264 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 007907 418 AASIAREKVAQIEK 431 (585)
Q Consensus 418 ~eaVe~ER~gRLaK 431 (585)
...++.||..-+..
T Consensus 107 ~~~ie~Ek~~a~~~ 120 (250)
T PRK14474 107 LEQLEREKQEFFKA 120 (250)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555544333
No 94
>PRK10869 recombination and repair protein; Provisional
Probab=58.59 E-value=3.3e+02 Score=31.18 Aligned_cols=35 Identities=23% Similarity=0.152 Sum_probs=20.9
Q ss_pred HHHHHhcCChhHhhcCCCCHHHHHHHHHHHHhcccc
Q 007907 499 LDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRH 534 (585)
Q Consensus 499 V~aaIsSLPeeA~qrGV~T~~qL~~RF~kV~~~vRr 534 (585)
|..=+..|..-.+++| .|.++|...+..++...-.
T Consensus 301 ie~Rl~~l~~L~rKyg-~~~~~~~~~~~~l~~eL~~ 335 (553)
T PRK10869 301 LEQRLSKQISLARKHH-VSPEELPQHHQQLLEEQQQ 335 (553)
T ss_pred HHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHH
Confidence 3444455556667777 4677777766666555443
No 95
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=57.82 E-value=2.6e+02 Score=29.67 Aligned_cols=164 Identities=13% Similarity=0.127 Sum_probs=95.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 328 LDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKA---A---ATIKSLQEKMEEKLRMELEQKENE 401 (585)
Q Consensus 328 ~Da~~~~Eelk~L~ekfEkeLk~~ra~El~~aee~a~lreELEkErakl---A---aalKalee~leeKLr~ELer~~eE 401 (585)
.+-.++-..|..+.++|-.+|.+--++=+.++-+.+.|+++|=.-=.++ . ...|--++++++-|.= +.....|
T Consensus 67 ~~s~l~~~~LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~-I~sqQ~E 145 (254)
T KOG2196|consen 67 APSSLTYKTLEELINKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEF-ILSQQQE 145 (254)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHH
Confidence 4566778889999999999999833343488889999999764322222 0 0111222222222221 1122334
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHH
Q 007907 402 AESKLKNALELAKA----EIAASIAREKVAQIEKMAEANLHINALCMAFYARSE-------EARKSYFAHKLALGALALE 470 (585)
Q Consensus 402 ~eqkLkqleE~aKa----EI~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~rse-------~lr~s~~tQqL~lAv~AL~ 470 (585)
.+.-|-.+++.... -+..+...||..--.-.+.+..+|+.|..=|+..-. -.++..-..+|..-..|..
T Consensus 146 LE~~L~~lE~k~~~~~g~~~~~~~D~eR~qty~~a~nidsqLk~l~~dL~~ii~~lN~~~~~~d~t~~~~qi~Kilnah~ 225 (254)
T KOG2196|consen 146 LEDLLDPLETKLELQSGHTYLSRADVEREQTYKMAENIDSQLKRLSEDLKQIIKSLNTMSKTVDKTDPIIQIEKILNAHM 225 (254)
T ss_pred HHHHHHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccccCCchHHHHHHHHHHH
Confidence 44444445444421 235567778877666677777777776665554432 2233233555555555555
Q ss_pred HHHh----cCCCcHHHHHHHHHhhcC
Q 007907 471 DALS----RGLPIQKEIDTLYTYLDG 492 (585)
Q Consensus 471 saL~----sg~PL~~EL~aLke~A~g 492 (585)
++|. ++..+.+-|+.|+++.++
T Consensus 226 ~sLqwl~d~st~~e~k~d~i~K~~~~ 251 (254)
T KOG2196|consen 226 DSLQWLDDNSTQLEKKLDKIKKLKDD 251 (254)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 5553 467888888888887653
No 96
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=57.59 E-value=1.6e+02 Score=27.26 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=13.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q 007907 326 AELDGRAFAEEKRALKEKYEKELRD 350 (585)
Q Consensus 326 ae~Da~~~~Eelk~L~ekfEkeLk~ 350 (585)
+..|.....+..+..+.+|+.++-.
T Consensus 29 ~~~dl~~q~~~a~~Aq~~YE~El~~ 53 (132)
T PF07926_consen 29 LREDLESQAKIAQEAQQKYERELVK 53 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555554
No 97
>PRK11637 AmiB activator; Provisional
Probab=56.94 E-value=2.9e+02 Score=30.10 Aligned_cols=32 Identities=6% Similarity=0.029 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 417 IAASIAREKVAQIEKMAEANLHINALCMAFYA 448 (585)
Q Consensus 417 I~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~ 448 (585)
+-..+.+++..+-..|.++......|...+..
T Consensus 220 ~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~ 251 (428)
T PRK11637 220 TLTGLESSLQKDQQQLSELRANESRLRDSIAR 251 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666655543
No 98
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=56.06 E-value=1.9e+02 Score=27.72 Aligned_cols=15 Identities=27% Similarity=0.193 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 007907 362 AAILEKELKRERAKA 376 (585)
Q Consensus 362 ~a~lreELEkErakl 376 (585)
+..+..+++++..+.
T Consensus 68 A~~~~~e~e~~L~~a 82 (175)
T PRK14472 68 AEAILRKNRELLAKA 82 (175)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 99
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=54.89 E-value=2.5e+02 Score=28.73 Aligned_cols=117 Identities=14% Similarity=0.123 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 312 LDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKL 391 (585)
Q Consensus 312 ~d~~~aih~ae~~Qae~Da~~~~Eelk~L~ekfEkeLk~~ra~El~~aee~a~lreELEkEraklAaalKalee~leeKL 391 (585)
+|||+-|..-.+..|++|.. |+..|++|-.+|-+. + ..-+....-..+-|.. +=.+...++...+.+.+.|...+
T Consensus 18 i~lLe~i~~F~reRa~iE~E-YA~~L~~L~kq~~k~--~-~~~~~~~s~~~~sW~~-iL~ete~~A~~~~~~ae~l~~~i 92 (237)
T cd07657 18 LRLLETMKKYMAKRAKSDRE-YASTLGSLANQGLKI--E-AGDDLQGSPISKSWKE-IMDSTDQLSKLIKQHAEALESGT 92 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCcC--C-CcccCCcChHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh
Confidence 89999999999999999998 999999999888221 1 0111111112233543 33344455555666666677666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 392 RMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLH 438 (585)
Q Consensus 392 r~ELer~~eE~eqkLkqleE~aKaEI~eaVe~ER~gRLaKL~EL~~~ 438 (585)
-..|..+..+.++-.+...+. -.++.+|+..-...|+....+
T Consensus 93 ~~~l~~l~~~~~~~rK~~~~~-----~~kl~~el~~~~~el~k~Kk~ 134 (237)
T cd07657 93 LDKLTLLIKDKRKAKKAYQEE-----RQQIDEQYKKLTDEVEKLKSE 134 (237)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 666666655555444433332 223444444444444433333
No 100
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=54.58 E-value=1.8e+02 Score=26.96 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 007907 327 ELDGRAFAEEKRALKEKYEKELRDS 351 (585)
Q Consensus 327 e~Da~~~~Eelk~L~ekfEkeLk~~ 351 (585)
-.+|....++...+.++|+..+.++
T Consensus 44 l~~a~~~~~~a~~~~~e~~~~l~~a 68 (156)
T PRK05759 44 LAAAERAKKELELAQAKYEAQLAEA 68 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777777777777763
No 101
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=54.05 E-value=1.9e+02 Score=27.15 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 007907 329 DGRAFAEEKRALKEKYEKELRD 350 (585)
Q Consensus 329 Da~~~~Eelk~L~ekfEkeLk~ 350 (585)
+|.-..++...+..+|+..+.+
T Consensus 47 ~A~~~~~eA~~~~~e~~~~l~~ 68 (159)
T PRK13461 47 KADEDQKKARELKLKNERELKN 68 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666666665
No 102
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=54.01 E-value=88 Score=26.33 Aligned_cols=47 Identities=28% Similarity=0.425 Sum_probs=23.1
Q ss_pred hhhhhHH-HHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 007907 325 QAELDGR-AFAEEKRALK---EKYEKELRDSRARELMRTEEAAILEKELKR 371 (585)
Q Consensus 325 Qae~Da~-~~~Eelk~L~---ekfEkeLk~~ra~El~~aee~a~lreELEk 371 (585)
|||+.|+ ++.+++++.+ -.|+..|++.......+..+...|+++++.
T Consensus 7 ~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 7 EAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555553 4566665554 345566665333333444444444444443
No 103
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=53.22 E-value=3.8e+02 Score=30.29 Aligned_cols=12 Identities=8% Similarity=-0.158 Sum_probs=6.2
Q ss_pred cccCCcccchhh
Q 007907 166 KVELTPQDQTVA 177 (585)
Q Consensus 166 ~~~~~~~~~~~~ 177 (585)
.++...|..+.+
T Consensus 125 s~~~sr~~~~gi 136 (455)
T KOG3850|consen 125 SKDKSRDFPTGI 136 (455)
T ss_pred CcchhhhhhhHH
Confidence 344455555555
No 104
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=53.16 E-value=2.6e+02 Score=28.35 Aligned_cols=14 Identities=7% Similarity=0.256 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHH
Q 007907 423 REKVAQIEKMAEAN 436 (585)
Q Consensus 423 ~ER~gRLaKL~EL~ 436 (585)
.||..|+..|..+.
T Consensus 127 ~eR~~Rl~~L~~~l 140 (251)
T PF11932_consen 127 EERQERLARLRAML 140 (251)
T ss_pred HHHHHHHHHHHHhh
Confidence 57888877776654
No 105
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=52.80 E-value=5.1e+02 Score=31.63 Aligned_cols=55 Identities=18% Similarity=0.298 Sum_probs=26.7
Q ss_pred HHhhhhhhHHHHHHHHH----HHHHHHHHHHHH-HHHHHh-------hhHHHHHHHHHHHHHHHHHH
Q 007907 322 EQRQAELDGRAFAEEKR----ALKEKYEKELRD-SRAREL-------MRTEEAAILEKELKRERAKA 376 (585)
Q Consensus 322 e~~Qae~Da~~~~Eelk----~L~ekfEkeLk~-~ra~El-------~~aee~a~lreELEkErakl 376 (585)
-+|+.+..+..+..+-+ ++...-+.+|++ ++++-+ .|.+.+.+-++|+.+|...+
T Consensus 835 kkr~~d~EmenlErqQkq~iE~~Eq~h~~rlR~eakRir~EQekd~~~Fqe~LK~~kKe~k~e~~~l 901 (1187)
T KOG0579|consen 835 KKRTSDLEMENLERQQKQEIEDTEQAHEHRLRNEAKRIRIEQEKDMRAFQERLKQEKKEFKQELTML 901 (1187)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45666666555544333 333333445555 444433 44445555555555555444
No 106
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=52.79 E-value=5.4e+02 Score=31.90 Aligned_cols=220 Identities=19% Similarity=0.229 Sum_probs=106.0
Q ss_pred Hhhhhc-cccc--CCCchHhHHHHHHHH---HHHhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHh-----hhHHHHH
Q 007907 296 MEELNN-GYLS--KDGKVVLDFLQAIHA---AEQRQAELDGRAFAEEKRALKEKYEKELRD-SRAREL-----MRTEEAA 363 (585)
Q Consensus 296 ~e~~~~-~~~~--~dgk~~~d~~~aih~---ae~~Qae~Da~~~~Eelk~L~ekfEkeLk~-~ra~El-----~~aee~a 363 (585)
.+++.+ -+++ -+--.++|++.++.+ -+|.-||++-++ ..+++-..-|+..+.. ....|. ...-...
T Consensus 594 ~e~~l~~l~l~~el~~~~~~d~ls~mkd~~~~~q~~~EL~~q~--~~L~ee~~af~~~v~~l~~~~e~~~~~ls~~~~~~ 671 (984)
T COG4717 594 WEEALDELGLSRELSPEQQLDILSTMKDLKKLMQKKAELTHQV--ARLREEQAAFEERVEGLLAVLEAQFIDLSTLFCVQ 671 (984)
T ss_pred HHHHHHhccCCccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHH
Confidence 344444 3444 355568888776654 466678888775 4444555667776655 222222 4555567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 364 ILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEI-AASIAREKVAQIEKMAEANLHINAL 442 (585)
Q Consensus 364 ~lreELEkEraklAaalKalee~leeKLr~ELer~~eE~eqkLkqleE~aKaEI-~eaVe~ER~gRLaKL~EL~~~V~aL 442 (585)
+|+...+....++..++..+.+.. ..+-.+|+..-+.+.+++..+-+++.+.= ++. .|=+.+-.++.++..+|+.+
T Consensus 672 r~~~~~e~~~Ee~r~~le~~~~~t-~El~~~L~ae~~~~~kei~dLfd~~~~~~ed~F--~e~A~~~qq~~q~~srl~~~ 748 (984)
T COG4717 672 RLRVAAELQKEEARLALEGNIERT-KELNDELRAELELHRKEILDLFDCGTADTEDAF--REAAREEQQLTQRESRLESL 748 (984)
T ss_pred HHHHHHHHhhHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccCcHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 777777666666532222222221 22333455555555666666666653210 111 22233444556666666666
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCCCCc-hHHHHHHhcCChh-HhhcCCCCHHH
Q 007907 443 CMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKD-SVLDLVLSSLPEE-TRYHGTETLLQ 520 (585)
Q Consensus 443 E~Al~~rse~lr~s~~tQqL~lAv~AL~saL~sg~PL~~EL~aLke~A~g~~~D-~LV~aaIsSLPee-A~qrGV~T~~q 520 (585)
+..+.+.. --.+.+........ .| ..|+..|-++-+.+..+ .=+.+=++.++-. +.=.|--|.+.
T Consensus 749 ~aql~~v~--------~~~~eL~~~~~~~~----~~-e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~g~~~a~ 815 (984)
T COG4717 749 EAQLEGVA--------AEAYELSASLDQRE----LK-EEELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGGTVAE 815 (984)
T ss_pred HHHHhcCC--------chhHHhhhhhhhhh----hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Confidence 66555420 01111111111111 11 45555554443322111 2223333333321 22245567888
Q ss_pred HHHHHHHHHhccc
Q 007907 521 LNQKFDALKGTLR 533 (585)
Q Consensus 521 L~~RF~kV~~~vR 533 (585)
|..||..++..+.
T Consensus 816 lr~~~~slk~~l~ 828 (984)
T COG4717 816 LRQRRESLKEDLE 828 (984)
T ss_pred HHHHHHHHHHHHH
Confidence 8888876655543
No 107
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=52.20 E-value=2.3e+02 Score=27.37 Aligned_cols=10 Identities=20% Similarity=0.235 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 007907 419 ASIAREKVAQ 428 (585)
Q Consensus 419 eaVe~ER~gR 428 (585)
..++.||..-
T Consensus 121 ~~I~~ek~~a 130 (173)
T PRK13453 121 SEINSQKERA 130 (173)
T ss_pred HHHHHHHHHH
Confidence 3445555543
No 108
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=51.71 E-value=4.9e+02 Score=31.11 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007907 334 AEEKRALKEKYEKELRD 350 (585)
Q Consensus 334 ~Eelk~L~ekfEkeLk~ 350 (585)
+..++.|+.++++.+++
T Consensus 564 ~~rv~~Lk~~~e~Ql~~ 580 (717)
T PF10168_consen 564 QRRVKLLKQQKEQQLKE 580 (717)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 109
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=51.53 E-value=4.7e+02 Score=30.81 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhH
Q 007907 414 KAEIAASIAREKVAQ---IEKMAEANLHINALCMAFYARS 450 (585)
Q Consensus 414 KaEI~eaVe~ER~gR---LaKL~EL~~~V~aLE~Al~~rs 450 (585)
|.++..++-.|..-. -.+|+++...+..+...+...+
T Consensus 183 ~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~ 222 (617)
T PF15070_consen 183 NMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKS 222 (617)
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 556666666665443 3556666666666666555443
No 110
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=51.52 E-value=2.3e+02 Score=27.21 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007907 334 AEEKRALKEKYEKELRD 350 (585)
Q Consensus 334 ~Eelk~L~ekfEkeLk~ 350 (585)
..-+...++.....+.+
T Consensus 45 ~~~l~~R~~~I~~~l~~ 61 (174)
T PRK07352 45 GKILEERREAILQALKE 61 (174)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 111
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=51.05 E-value=2.2e+02 Score=26.92 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 328 LDGRAFAEEKRALKEKYEKELRDSRA 353 (585)
Q Consensus 328 ~Da~~~~Eelk~L~ekfEkeLk~~ra 353 (585)
.+|.-..++...+.++|++.+.+++.
T Consensus 49 ~~A~~~~~ea~~~~~e~e~~l~~A~~ 74 (164)
T PRK14471 49 ASAEEARKEMQNLQADNERLLKEARA 74 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777888888888877433
No 112
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=50.81 E-value=4.3e+02 Score=30.13 Aligned_cols=48 Identities=19% Similarity=0.111 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 007907 421 IAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALA 468 (585)
Q Consensus 421 Ve~ER~gRLaKL~EL~~~V~aLE~Al~~rse~lr~s~~tQqL~lAv~A 468 (585)
.+.+|..-+.++-+++.+--.++.+-....+..++....-+|+-++.+
T Consensus 88 ~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~r~~e~la~~~~~ 135 (459)
T KOG0288|consen 88 AENLRIRSLNEIRELREQKAEFENAELALREMRRKMRIAERLAEALKD 135 (459)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHhhh
Confidence 456666666777777777666666666555666666655555554443
No 113
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=50.47 E-value=2.9e+02 Score=28.09 Aligned_cols=9 Identities=33% Similarity=0.519 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 007907 420 SIAREKVAQ 428 (585)
Q Consensus 420 aVe~ER~gR 428 (585)
.++.||..-
T Consensus 109 ~ie~E~~~a 117 (246)
T TIGR03321 109 ALRREQAAL 117 (246)
T ss_pred HHHHHHHHH
Confidence 444555443
No 114
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=50.26 E-value=4.3e+02 Score=30.04 Aligned_cols=10 Identities=20% Similarity=0.222 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 007907 390 KLRMELEQKE 399 (585)
Q Consensus 390 KLr~ELer~~ 399 (585)
.|..+.++++
T Consensus 213 ~L~~e~~~L~ 222 (563)
T TIGR00634 213 ALEAEQQRLS 222 (563)
T ss_pred HHHHHHHHHh
Confidence 3444444443
No 115
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.96 E-value=5e+02 Score=30.73 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 401 EAESKLKNALELAKAEIAASIAREKV 426 (585)
Q Consensus 401 E~eqkLkqleE~aKaEI~eaVe~ER~ 426 (585)
..+++++++.-.+.+++..-+..||.
T Consensus 634 ~L~~~~~~L~~~~~~~lp~l~~AErd 659 (741)
T KOG4460|consen 634 DLMNRMKKLLHSFHSELPVLSDAERD 659 (741)
T ss_pred HHHHHHHHHHhcccccCCcchhHHHH
Confidence 34444444444444444555555554
No 116
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=49.78 E-value=3.1e+02 Score=28.18 Aligned_cols=51 Identities=33% Similarity=0.459 Sum_probs=34.0
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 007907 321 AEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAK 375 (585)
Q Consensus 321 ae~~Qae~Da~~~~Eelk~L~ekfEkeLk~~ra~El~~aee~a~lreELEkErak 375 (585)
.++.+.+++...+..++..++.+|+.+...... +..++..++++++.+...
T Consensus 68 ~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~----le~el~~lrk~ld~~~~~ 118 (312)
T PF00038_consen 68 KEKARLELEIDNLKEELEDLRRKYEEELAERKD----LEEELESLRKDLDEETLA 118 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhhhhhhhh
Confidence 456777777788888888888888888765222 344455566665555444
No 117
>PRK12704 phosphodiesterase; Provisional
Probab=49.73 E-value=4.5e+02 Score=30.10 Aligned_cols=13 Identities=38% Similarity=0.560 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 007907 360 EEAAILEKELKRE 372 (585)
Q Consensus 360 ee~a~lreELEkE 372 (585)
+++...+.|++++
T Consensus 64 eE~~~~R~Ele~e 76 (520)
T PRK12704 64 EEIHKLRNEFEKE 76 (520)
T ss_pred HHHHHHHHHHHHH
Confidence 4444455555544
No 118
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=48.78 E-value=4.7e+02 Score=30.06 Aligned_cols=29 Identities=10% Similarity=0.066 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 419 ASIAREKVAQIEKMAEANLHINALCMAFY 447 (585)
Q Consensus 419 eaVe~ER~gRLaKL~EL~~~V~aLE~Al~ 447 (585)
++....+...=.++.+|..+|+.|=.-++
T Consensus 424 e~~~~~~~s~d~~I~dLqEQlrDlmf~le 452 (493)
T KOG0804|consen 424 EREKEALGSKDEKITDLQEQLRDLMFFLE 452 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHheehh
Confidence 33333334444444444444444443333
No 119
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=48.49 E-value=3.7e+02 Score=29.47 Aligned_cols=134 Identities=18% Similarity=0.204 Sum_probs=76.0
Q ss_pred CCCchHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHH
Q 007907 306 KDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAAT---IKS 382 (585)
Q Consensus 306 ~dgk~~~d~~~aih~ae~~Qae~Da~~~~Eelk~L~ekfEkeLk~~ra~El~~aee~a~lreELEkEraklAaa---lKa 382 (585)
+|-.+-++-..-.|-. -+.-..-..-.+.+|+.+|-+.|..+..+|-...++.+.|=.+|.+....++.. +++
T Consensus 223 kDWR~H~~QM~s~~~n----Ie~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q 298 (384)
T KOG0972|consen 223 KDWRLHLEQMNSMHKN----IEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQ 298 (384)
T ss_pred HHHHHHHHHHHHHHHH----HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555544433 223333456678899999999999888888888888888877777777666442 222
Q ss_pred HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 383 LQEKME------EKLRMELEQKENEAESKLKNALELA-KAEIAASIAREKVAQIEKMAEANLHINALCMAFY 447 (585)
Q Consensus 383 lee~le------eKLr~ELer~~eE~eqkLkqleE~a-KaEI~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~ 447 (585)
...-+. ..+-+|+++++++.+++...+--=+ --.|+.+|.+= ...+..|+.+|.=++.++.
T Consensus 299 ~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKL----k~et~~mnv~igv~ehs~l 366 (384)
T KOG0972|consen 299 ASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKL----KEETQTMNVQIGVFEHSIL 366 (384)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHH----HHHHHhhhhheehhhHHHH
Confidence 222222 2334455555555555442211100 11144444332 2346678888887777765
No 120
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=48.02 E-value=4.6e+02 Score=29.74 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 007907 422 AREKVAQIEKMAEANLHINALCMAFYARSEEARK 455 (585)
Q Consensus 422 e~ER~gRLaKL~EL~~~V~aLE~Al~~rse~lr~ 455 (585)
.++|..++++|..+.+.+..|..=..+....+.-
T Consensus 156 ~~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk~ 189 (448)
T COG1322 156 AEERSTLLEEIDRLLGEIQQLAQEAGNLTAALKG 189 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4678888888888888877777666665555554
No 121
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=47.31 E-value=4.9e+02 Score=32.56 Aligned_cols=10 Identities=10% Similarity=0.514 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 007907 419 ASIAREKVAQ 428 (585)
Q Consensus 419 eaVe~ER~gR 428 (585)
+++++||..|
T Consensus 497 er~erer~~r 506 (1021)
T PTZ00266 497 DRLERDRLDR 506 (1021)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 122
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=47.04 E-value=2.7e+02 Score=26.75 Aligned_cols=14 Identities=21% Similarity=0.176 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 007907 363 AILEKELKRERAKA 376 (585)
Q Consensus 363 a~lreELEkErakl 376 (585)
+.+..++++.....
T Consensus 67 ~~~~~e~e~~l~~a 80 (173)
T PRK13460 67 EALLKDYEARLNSA 80 (173)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 123
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=45.99 E-value=7.7e+02 Score=31.70 Aligned_cols=12 Identities=17% Similarity=0.036 Sum_probs=7.3
Q ss_pred cHHHHHHHHHHh
Q 007907 544 GILTHSLAHIAS 555 (585)
Q Consensus 544 GvlsHalS~v~S 555 (585)
-++.|.++.=++
T Consensus 828 k~lq~~leae~~ 839 (1317)
T KOG0612|consen 828 KELQDQLEAEQC 839 (1317)
T ss_pred HHHHHHHHHHHH
Confidence 456777766553
No 124
>PRK04863 mukB cell division protein MukB; Provisional
Probab=44.72 E-value=8.4e+02 Score=31.80 Aligned_cols=42 Identities=10% Similarity=-0.073 Sum_probs=29.4
Q ss_pred hhHhhcCCCCHHHHHHHHHHHHhccccccccCCCCCcHHHHH
Q 007907 508 EETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHS 549 (585)
Q Consensus 508 eeA~qrGV~T~~qL~~RF~kV~~~vRraSLVPe~gAGvlsHa 549 (585)
......|-.+..+..++|+.+.+..+..-.+-....++=.|+
T Consensus 481 ~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (1486)
T PRK04863 481 LVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRL 522 (1486)
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHH
Confidence 345567888888888888888888877776666544444443
No 125
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=43.94 E-value=2.9e+02 Score=26.17 Aligned_cols=9 Identities=56% Similarity=0.475 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q 007907 420 SIAREKVAQ 428 (585)
Q Consensus 420 aVe~ER~gR 428 (585)
.++.||..-
T Consensus 112 ~i~~ek~~a 120 (164)
T PRK14471 112 SIESEKNAA 120 (164)
T ss_pred HHHHHHHHH
Confidence 445555443
No 126
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=43.91 E-value=2.6e+02 Score=25.57 Aligned_cols=10 Identities=30% Similarity=0.358 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 007907 419 ASIAREKVAQ 428 (585)
Q Consensus 419 eaVe~ER~gR 428 (585)
..++.||..-
T Consensus 108 ~~i~~e~~~a 117 (140)
T PRK07353 108 REIEQQKQAA 117 (140)
T ss_pred HHHHHHHHHH
Confidence 3444555433
No 127
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=43.59 E-value=99 Score=37.05 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007907 333 FAEEKRALKEKYEKELRD 350 (585)
Q Consensus 333 ~~Eelk~L~ekfEkeLk~ 350 (585)
+.+.+.+|+++|.+.|.+
T Consensus 509 L~eK~~kLk~Efnkkl~e 526 (762)
T PLN03229 509 LMEKIEKLKDEFNKRLSR 526 (762)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 555677777777776665
No 128
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=43.19 E-value=4.6e+02 Score=28.35 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 007907 329 DGRAFAEEKRALKEKYEKELR 349 (585)
Q Consensus 329 Da~~~~Eelk~L~ekfEkeLk 349 (585)
++.-|.+.++.|..+++.+++
T Consensus 58 ~~~eYl~~~~~L~~~~kerl~ 78 (291)
T KOG4466|consen 58 TAPEYLKRVKKLDESRKERLR 78 (291)
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444
No 129
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=42.59 E-value=8.2 Score=43.63 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 380 IKSLQEKMEEKLRMELEQKENEAESKLK--NALELAKAEIAASIAREKVAQIEKMAEANLHI 439 (585)
Q Consensus 380 lKalee~leeKLr~ELer~~eE~eqkLk--qleE~aKaEI~eaVe~ER~gRLaKL~EL~~~V 439 (585)
||.+++.=+.++|.-+.|+-. +|..|+ +.+.++-.+.+.+|..+...||+.|++++.+|
T Consensus 424 Lr~QQ~eKd~qmksII~RL~~-vEeELrre~~~m~~~~~~kqrii~aQ~~~i~~Ldaan~Rl 484 (495)
T PF12004_consen 424 LRRQQEEKDSQMKSIISRLMA-VEEELRREHAEMQAVLDHKQRIIDAQEKRIAALDAANSRL 484 (495)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHhhhhHHHHHHHHhhhhh-hhhhhhhhHHHHhcccccchHHHHHhhhhccccccccccc
Confidence 344444444455555444421 111121 23334455678889999999999999998875
No 130
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=42.30 E-value=7e+02 Score=30.19 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 417 IAASIAREKVAQIEKMAEANLHINA 441 (585)
Q Consensus 417 I~eaVe~ER~gRLaKL~EL~~~V~a 441 (585)
+.++|..--.....+|.++-.++|.
T Consensus 576 lqekvsevEsrl~E~L~~~E~rLNe 600 (739)
T PF07111_consen 576 LQEKVSEVESRLREQLSEMEKRLNE 600 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555556666666666654
No 131
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=41.68 E-value=3.3e+02 Score=26.25 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007907 330 GRAFAEEKRALKEKYEKELRD 350 (585)
Q Consensus 330 a~~~~Eelk~L~ekfEkeLk~ 350 (585)
|.-..++...+..+|+..+.+
T Consensus 65 Ae~~~~ea~~~~~e~e~~L~~ 85 (167)
T PRK08475 65 IQEKLKESKEKKEDALKKLEE 85 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666665
No 132
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=41.53 E-value=5.6e+02 Score=28.84 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=19.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 007907 352 RARELMRTEEAAILEKELKRERAKAAAT 379 (585)
Q Consensus 352 ra~El~~aee~a~lreELEkEraklAaa 379 (585)
|..-..++.+=..+...||+||..+..+
T Consensus 127 Re~haqdaaeGDDlt~~LEKEReqL~QQ 154 (561)
T KOG1103|consen 127 REAHAQDAAEGDDLTAHLEKEREQLQQQ 154 (561)
T ss_pred HHHHhhhhhccchHHHHHHHHHHHHHHH
Confidence 4444456666677888888888888443
No 133
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=40.52 E-value=3.2e+02 Score=25.73 Aligned_cols=9 Identities=33% Similarity=0.305 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 007907 420 SIAREKVAQ 428 (585)
Q Consensus 420 aVe~ER~gR 428 (585)
.++.||..-
T Consensus 109 ~i~~e~~~a 117 (159)
T PRK13461 109 EAQREKEKA 117 (159)
T ss_pred HHHHHHHHH
Confidence 344454433
No 134
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=40.47 E-value=6.2e+02 Score=29.01 Aligned_cols=13 Identities=54% Similarity=0.654 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 007907 360 EEAAILEKELKRE 372 (585)
Q Consensus 360 ee~a~lreELEkE 372 (585)
+++...+.|++++
T Consensus 58 eE~~~~R~Ele~e 70 (514)
T TIGR03319 58 EEVHKLRAELERE 70 (514)
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555555
No 135
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.44 E-value=7e+02 Score=29.65 Aligned_cols=22 Identities=9% Similarity=-0.111 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 007907 453 ARKSYFAHKLALGALALEDALS 474 (585)
Q Consensus 453 lr~s~~tQqL~lAv~AL~saL~ 474 (585)
.+-+..+|-+-.-+++|.++++
T Consensus 658 rdFk~Elq~~~~~~~~L~~~iE 679 (741)
T KOG4460|consen 658 RDFKKELQLIPDQLRHLGNAIE 679 (741)
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3333444444444555555544
No 136
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=40.27 E-value=8.1e+02 Score=30.37 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 007907 341 KEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAA 378 (585)
Q Consensus 341 ~ekfEkeLk~~ra~El~~aee~a~lreELEkEraklAa 378 (585)
...|-..++. +.+..|.+..++|+..|++++..++.
T Consensus 755 ~~~f~e~vk~--~rqs~~~e~~~~~ea~leaer~rl~e 790 (988)
T KOG2072|consen 755 RDKFKEHVKG--ERQSEYEEKLKQFEARLEAERNRLAE 790 (988)
T ss_pred HHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4566667774 66678889999999999999866543
No 137
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=40.24 E-value=6.7e+02 Score=29.36 Aligned_cols=66 Identities=32% Similarity=0.400 Sum_probs=38.1
Q ss_pred HHHhhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 321 AEQRQAELDGRAFAE----EKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEK 390 (585)
Q Consensus 321 ae~~Qae~Da~~~~E----elk~L~ekfEkeLk~~ra~El~~aee~a~lreELEkEraklAaalKalee~leeK 390 (585)
|+-+--++|...+.. ....++..||.++..+|.. ..+.+.=+.+|+.+..++..+++.+..+++++
T Consensus 63 aqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~----l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~ 132 (546)
T KOG0977|consen 63 AQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKL----LDETARERAKLEIEITKLREELKELRKKLEKA 132 (546)
T ss_pred HHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 455555666665554 4456789999999985554 33333344455555555544555555554443
No 138
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=40.21 E-value=4.6e+02 Score=27.48 Aligned_cols=32 Identities=13% Similarity=0.326 Sum_probs=22.5
Q ss_pred HHHHhcCChhHhhcCCCCHHHHHHHHHHHHhccccccccCCCC
Q 007907 500 DLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGG 542 (585)
Q Consensus 500 ~aaIsSLPeeA~qrGV~T~~qL~~RF~kV~~~vRraSLVPe~g 542 (585)
.-..+.||+++ ..-|.++.....-++.||=+|
T Consensus 166 ~~L~~~l~~el-----------l~~yeri~~~~kg~gvvpl~g 197 (239)
T COG1579 166 EELKEKLDPEL-----------LSEYERIRKNKKGVGVVPLEG 197 (239)
T ss_pred HHHHHhcCHHH-----------HHHHHHHHhcCCCceEEeecC
Confidence 34456677773 456777778888888888874
No 139
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=40.14 E-value=4.6e+02 Score=27.50 Aligned_cols=89 Identities=16% Similarity=0.175 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 337 KRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKM--EEKLRMELEQKENEAESKLKNALELAK 414 (585)
Q Consensus 337 lk~L~ekfEkeLk~~ra~El~~aee~a~lreELEkEraklAaalKalee~l--eeKLr~ELer~~eE~eqkLkqleE~aK 414 (585)
+--|+.+-|.--+.+-.++-+++.++.+.|.||++..... +|.+...- -..++..|...-.++..+...++|..+
T Consensus 99 I~pLe~k~E~wkk~~~~ldKd~~k~~kk~R~elKk~~~dt---~klqkk~rKg~~~~~~~ldsa~~dvn~k~~~lEe~ek 175 (231)
T cd07643 99 VNPLQEKIEEWKKVANQLDKDHAKEYKKARQEIKKKSSDT---IRLQKKARKGKGDLQPQLDSAMQDVNDKYLLLEETEK 175 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHhccCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444445566666666666666554433 11111110 022333444444555556667888878
Q ss_pred HHHHHHHHHHHHHH
Q 007907 415 AEIAASIAREKVAQ 428 (585)
Q Consensus 415 aEI~eaVe~ER~gR 428 (585)
..++.++-.||..+
T Consensus 176 ~alR~aLiEER~Rf 189 (231)
T cd07643 176 KAVRNALIEERGRF 189 (231)
T ss_pred HHHHHHHHHHHHHH
Confidence 78999999999876
No 140
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=39.36 E-value=3.3e+02 Score=26.19 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 384 QEKMEEKLRMELEQKENEAESKLK 407 (585)
Q Consensus 384 ee~leeKLr~ELer~~eE~eqkLk 407 (585)
+..+++++..||+++.++..++|.
T Consensus 33 e~~iq~Rva~eL~~L~~~~~~~~~ 56 (142)
T PF07956_consen 33 ELHIQERVAEELKRLEEEELKKFE 56 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566777777777665544444
No 141
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=38.54 E-value=3.7e+02 Score=31.12 Aligned_cols=70 Identities=21% Similarity=0.331 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 341 KEKYEKELRDSRAREL-------MRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALE 411 (585)
Q Consensus 341 ~ekfEkeLk~~ra~El-------~~aee~a~lreELEkEraklAaalKalee~leeKLr~ELer~~eE~eqkLkqleE 411 (585)
.+.|++.++.++.... ...+++.+++.|+++.++++....+. -+...+.++..++.++..-+..+.++.+
T Consensus 193 ~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~-l~~~~~~~~~~~~~lk~ap~~D~~~L~~ 269 (555)
T TIGR03545 193 LEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKND-LQNDKKQLKADLAELKKAPQNDLKRLEN 269 (555)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHhccHhHHHHHHH
Confidence 3445555555333322 34455566666665555554221111 1113334444444444444444444433
No 142
>PLN03188 kinesin-12 family protein; Provisional
Probab=38.52 E-value=1e+03 Score=30.87 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=16.9
Q ss_pred CCCCccchhhHHHHHHHHHHHHhchhhhhhhhhhhccCc
Q 007907 56 SNFSPIIFGATVVVGVGLIAYQNGYLDQYIDIEKEKHSS 94 (585)
Q Consensus 56 ~~~~k~~~g~~~v~~~~~~ayq~g~ld~~~~~~k~~~~~ 94 (585)
...+|.|+|-+==.||- .|-|. +.|| --.+|+
T Consensus 747 ~~~~k~~~~~t~~laas---l~rgl--~ii~--~h~~~~ 778 (1320)
T PLN03188 747 TQKSKSFLAPTEHLAAS---LHRGL--EIID--SHRQSS 778 (1320)
T ss_pred cccccccCCchHHHHHH---Hhcch--HHHh--hcccCc
Confidence 44566666665444443 56665 3555 444444
No 143
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=38.44 E-value=3.3e+02 Score=28.07 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 416 EIAASIAREKVAQIEKMAEANLHINA 441 (585)
Q Consensus 416 EI~eaVe~ER~gRLaKL~EL~~~V~a 441 (585)
+|...|.++|..--..|.+|...+..
T Consensus 171 ~Lq~lI~Kwr~~~q~~l~eL~~~~~~ 196 (221)
T PF10376_consen 171 QLQSLIKKWRSASQEALYELQSEMSE 196 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36777888898888888888877766
No 144
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=37.45 E-value=7.9e+02 Score=29.41 Aligned_cols=15 Identities=20% Similarity=0.100 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHH
Q 007907 458 FAHKLALGALALEDA 472 (585)
Q Consensus 458 ~tQqL~lAv~AL~sa 472 (585)
.+..|..|+.+++++
T Consensus 588 ~~e~L~~aL~amqdk 602 (697)
T PF09726_consen 588 DTEVLMSALSAMQDK 602 (697)
T ss_pred hHHHHHHHHHHHHHH
Confidence 355555555555554
No 145
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=37.22 E-value=7.6e+02 Score=29.14 Aligned_cols=19 Identities=21% Similarity=0.330 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 007907 357 MRTEEAAILEKELKRERAK 375 (585)
Q Consensus 357 ~~aee~a~lreELEkErak 375 (585)
.|+++...|++|-+....+
T Consensus 33 qmseev~~L~eEk~~~~~~ 51 (617)
T PF15070_consen 33 QMSEEVRTLKEEKEHDISR 51 (617)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555554444433
No 146
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=37.15 E-value=3.7e+02 Score=25.45 Aligned_cols=11 Identities=18% Similarity=0.181 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 007907 418 AASIAREKVAQ 428 (585)
Q Consensus 418 ~eaVe~ER~gR 428 (585)
...++.||..-
T Consensus 110 ~~~I~~ek~~a 120 (164)
T PRK14473 110 RAQAEQERQRM 120 (164)
T ss_pred HHHHHHHHHHH
Confidence 34455555443
No 147
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=37.14 E-value=3.4e+02 Score=25.11 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 419 ASIAREKVAQIEKMAEANLHINALC 443 (585)
Q Consensus 419 eaVe~ER~gRLaKL~EL~~~V~aLE 443 (585)
...+.+|...-..|.++..++..|.
T Consensus 94 ~sw~~qk~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 94 ASWEEQKEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555556666666666554
No 148
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=37.06 E-value=3.4e+02 Score=25.00 Aligned_cols=21 Identities=14% Similarity=0.151 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007907 330 GRAFAEEKRALKEKYEKELRD 350 (585)
Q Consensus 330 a~~~~Eelk~L~ekfEkeLk~ 350 (585)
|....++...+..+|+..|.+
T Consensus 38 A~~~~~ea~~~~~e~~~~l~~ 58 (147)
T TIGR01144 38 AERAKKEAALAQKKAQVILKE 58 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555554
No 149
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=36.44 E-value=4.2e+02 Score=26.75 Aligned_cols=16 Identities=6% Similarity=0.165 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 007907 362 AAILEKELKRERAKAA 377 (585)
Q Consensus 362 ~a~lreELEkEraklA 377 (585)
+.+..+.+++.|.+++
T Consensus 78 v~~rqEa~eaAR~RmQ 93 (190)
T PF06936_consen 78 VVRRQEAMEAARRRMQ 93 (190)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555555553
No 150
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=36.19 E-value=8.3e+02 Score=29.26 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=5.4
Q ss_pred HHHHHHHHHHhc
Q 007907 520 QLNQKFDALKGT 531 (585)
Q Consensus 520 qL~~RF~kV~~~ 531 (585)
+|+.|-..|-.+
T Consensus 647 ~lk~ki~~~~av 658 (697)
T PF09726_consen 647 ELKAKIAQLLAV 658 (697)
T ss_pred HHHHHHHHHHhc
Confidence 445554444333
No 151
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.12 E-value=7.1e+02 Score=28.45 Aligned_cols=112 Identities=15% Similarity=0.157 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcHHHHHHHHHhhcCCCCchHHHHHHhcCChh
Q 007907 433 AEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGL---PIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEE 509 (585)
Q Consensus 433 ~EL~~~V~aLE~Al~~rse~lr~s~~tQqL~lAv~AL~saL~sg~---PL~~EL~aLke~A~g~~~D~LV~aaIsSLPee 509 (585)
+.....++.|+.++..-.......--.+++..+..||++-+.++. ...+=|+-++...+- -.=|+.+|++=|..
T Consensus 290 er~~~~l~~l~~vl~~Id~s~~nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~---~~EV~~~la~~~~~ 366 (439)
T KOG2911|consen 290 ERKVSSLNNLETVLSQIDNSQTNKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDR---QEEVEDALASYNVN 366 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhh---HHHHHHHHhcCCCC
Confidence 334445555555555544444444456777889999998887542 244545555555433 45566666665433
Q ss_pred HhhcCCCCHHHHHHHHHHHHhcccc-ccccCCCCCcHHHHHHH
Q 007907 510 TRYHGTETLLQLNQKFDALKGTLRH-FSLIPPGGGGILTHSLA 551 (585)
Q Consensus 510 A~qrGV~T~~qL~~RF~kV~~~vRr-aSLVPe~gAGvlsHalS 551 (585)
.--+-.++|-.-|..|..+-.+ -++++|.+ ....|.+-
T Consensus 367 ---~~d~~de~lEkEL~~L~~D~~k~e~~~lp~~-~~sr~~~~ 405 (439)
T KOG2911|consen 367 ---NIDFEDEDLEKELEDLEADEKKNEDLVLPLN-SVSRDFLK 405 (439)
T ss_pred ---CCccchHHHHHHHHHHHhccccCCccCCCCC-CchHHHhh
Confidence 2234578899999988888888 89999873 55554443
No 152
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=35.42 E-value=3e+02 Score=32.21 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007907 390 KLRMELEQKENEAESKL 406 (585)
Q Consensus 390 KLr~ELer~~eE~eqkL 406 (585)
.+..+.+++.+++++.|
T Consensus 505 n~~e~~kkl~~~~qr~l 521 (588)
T KOG3612|consen 505 NIKEEIKKLAEEHQRAL 521 (588)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 153
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=34.30 E-value=4.1e+02 Score=30.52 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=17.1
Q ss_pred HhccccccccCCCCCcHHHHHHHHHHhhcc
Q 007907 529 KGTLRHFSLIPPGGGGILTHSLAHIASWLK 558 (585)
Q Consensus 529 ~~~vRraSLVPe~gAGvlsHalS~v~S~Ll 558 (585)
+...+.+==||+| +-+++ |..++.|+
T Consensus 229 ~~~~~pvYTiP~N-STL~G---S~aMTALI 254 (472)
T TIGR03752 229 EKKARPVYTIPEN-STLMG---SVAMTALI 254 (472)
T ss_pred ccccceeEecCCC-Cchhh---hHHHHHHh
Confidence 4456777789998 56555 55566654
No 154
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=34.21 E-value=7.7e+02 Score=28.33 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHh
Q 007907 460 HKLALGALALEDALS 474 (585)
Q Consensus 460 QqL~lAv~AL~saL~ 474 (585)
+++..-+..|.++|.
T Consensus 182 ~~i~~ea~nLt~ALk 196 (475)
T PRK10361 182 AQMAQEAINLTRALK 196 (475)
T ss_pred HHHHHHHHHHHHHHc
Confidence 445556666666664
No 155
>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]
Probab=34.13 E-value=5.6e+02 Score=26.70 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 007907 333 FAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKA-AATIKSLQEKMEEKLRM 393 (585)
Q Consensus 333 ~~Eelk~L~ekfEkeLk~~ra~El~~aee~a~lreELEkErakl-AaalKalee~leeKLr~ 393 (585)
.+.+++.+..=-++++.+ ++.|... .-++||.-|+.++ .++...+.+-|+.|++.
T Consensus 6 v~kqi~~M~aFI~qEA~E-KA~EI~~-----kAeeEfnIEK~rlV~~q~~kI~~~yekKeKq 61 (220)
T KOG1664|consen 6 VSKQIKHMVAFIRQEAEE-KAKEIDA-----KAEEEFNIEKGRLVQEQRLKIMQYYEKKEKQ 61 (220)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHhhh-----hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777 5555522 2245888899998 66666667777766554
No 156
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=33.82 E-value=8.9e+02 Score=28.94 Aligned_cols=13 Identities=31% Similarity=0.659 Sum_probs=7.4
Q ss_pred CCCCccccccccc
Q 007907 246 FPQQSIIIEDKSE 258 (585)
Q Consensus 246 ~~~~~~~~~~~~~ 258 (585)
+|...++.++...
T Consensus 317 ~P~~dLsveEK~~ 329 (652)
T COG2433 317 TPDRDLSVEEKQE 329 (652)
T ss_pred CCcccCCHHHHHH
Confidence 3455666666555
No 157
>PTZ00121 MAEBL; Provisional
Probab=33.41 E-value=1.3e+03 Score=30.74 Aligned_cols=12 Identities=42% Similarity=0.387 Sum_probs=5.2
Q ss_pred chhhhhhhHhhh
Q 007907 288 ATEDFINVMEEL 299 (585)
Q Consensus 288 ~~e~~~~~~e~~ 299 (585)
++|++++-.|+.
T Consensus 1092 ~~~~~~~~~e~~ 1103 (2084)
T PTZ00121 1092 ATEEAFGKAEEA 1103 (2084)
T ss_pred hhHHHhhhHHHh
Confidence 444444444443
No 158
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=33.06 E-value=4.2e+02 Score=24.93 Aligned_cols=11 Identities=18% Similarity=0.259 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 007907 418 AASIAREKVAQ 428 (585)
Q Consensus 418 ~eaVe~ER~gR 428 (585)
...|+.||..=
T Consensus 104 ~~~I~~ek~~a 114 (159)
T PRK09173 104 EQKIAQAETDA 114 (159)
T ss_pred HHHHHHHHHHH
Confidence 34455555543
No 159
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=32.16 E-value=4.8e+02 Score=25.27 Aligned_cols=10 Identities=30% Similarity=0.322 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 007907 419 ASIAREKVAQ 428 (585)
Q Consensus 419 eaVe~ER~gR 428 (585)
..++.||..-
T Consensus 130 ~~I~~ek~~a 139 (184)
T PRK13455 130 DQIASAEAAA 139 (184)
T ss_pred HHHHHHHHHH
Confidence 3444554433
No 160
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=30.85 E-value=7e+02 Score=26.82 Aligned_cols=30 Identities=20% Similarity=0.190 Sum_probs=21.5
Q ss_pred cCCCchHhH-HHHHHHHHHHhhhhhhHHHHH
Q 007907 305 SKDGKVVLD-FLQAIHAAEQRQAELDGRAFA 334 (585)
Q Consensus 305 ~~dgk~~~d-~~~aih~ae~~Qae~Da~~~~ 334 (585)
+.|+|+.+| =+.-+...-+-||..|-|--.
T Consensus 108 ~~d~r~lm~~Qf~lvK~~aRl~ak~~WYeWR 138 (312)
T smart00787 108 SPDVKLLMDKQFQLVKTFARLEAKKMWYEWR 138 (312)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777776 367777777888888877544
No 161
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=30.79 E-value=6.9e+02 Score=29.09 Aligned_cols=14 Identities=36% Similarity=0.548 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHH
Q 007907 384 QEKMEEKLRMELEQ 397 (585)
Q Consensus 384 ee~leeKLr~ELer 397 (585)
.+.++..|..|.+.
T Consensus 544 reslekql~~Erkl 557 (641)
T KOG3915|consen 544 RESLEKQLAMERKL 557 (641)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555443
No 162
>PLN03086 PRLI-interacting factor K; Provisional
Probab=30.60 E-value=3.3e+02 Score=31.87 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=13.1
Q ss_pred cCCCcHHHHHHHHHhhcC
Q 007907 475 RGLPIQKEIDTLYTYLDG 492 (585)
Q Consensus 475 sg~PL~~EL~aLke~A~g 492 (585)
.|.-|...|+++...+.|
T Consensus 74 ~g~~~~~~~~~~~~~~~G 91 (567)
T PLN03086 74 RGIVFSRIFEAVSFQGNG 91 (567)
T ss_pred CCeEEEEEeeccccCCCC
Confidence 467777778877777666
No 163
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=30.31 E-value=6.3e+02 Score=26.12 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=14.5
Q ss_pred hcCCCcHHHHHHHHHhhcC
Q 007907 474 SRGLPIQKEIDTLYTYLDG 492 (585)
Q Consensus 474 ~sg~PL~~EL~aLke~A~g 492 (585)
.+..-|-..+.+|.++...
T Consensus 239 ~~~~G~l~R~~Al~~L~~~ 257 (301)
T PF14362_consen 239 SANDGFLARLEALWELTKE 257 (301)
T ss_pred ccCCCHHHHHHHHHHHHhC
Confidence 4456788889999888854
No 164
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=29.92 E-value=5.6e+02 Score=31.41 Aligned_cols=99 Identities=18% Similarity=0.105 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----HHHHHHHHHhcCCCcHHHHHHHHHhhcCCCCchHHHHHHhc
Q 007907 431 KMAEANLHINALCMAFYARSEEARKSYFAHKLAL-----GALALEDALSRGLPIQKEIDTLYTYLDGIEKDSVLDLVLSS 505 (585)
Q Consensus 431 KL~EL~~~V~aLE~Al~~rse~lr~s~~tQqL~l-----Av~AL~saL~sg~PL~~EL~aLke~A~g~~~D~LV~aaIsS 505 (585)
+++....++..|+.+++....-++.++.+..-|- -++.|...+..-.-|..|+.-++.-... -+|---...+.-
T Consensus 221 ~v~~~le~l~elq~a~~el~~~l~~ae~~~~~w~pvgdl~idsl~~h~e~~~~~~~ei~p~~~~v~~-vndla~ql~~~d 299 (966)
T KOG4286|consen 221 KIDETLERLQELQEATDELDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGEIAPLKENVSH-VNDLARQLTTLD 299 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhccccHHHHHHhHHHHHHHHHHHHHhhcchHhhchhh-HHHHHHHhhhcc
Confidence 4444445555555555555544555554444443 2345555554433445555544443311 011111122222
Q ss_pred CChhHhhcCCCCHHHHHHHHHHHHhcc
Q 007907 506 LPEETRYHGTETLLQLNQKFDALKGTL 532 (585)
Q Consensus 506 LPeeA~qrGV~T~~qL~~RF~kV~~~v 532 (585)
|-.. .+..-+.++|+-||..++.-+
T Consensus 300 ~~ls--~~~~~~le~~n~rwk~Lq~SV 324 (966)
T KOG4286|consen 300 IQLS--PYNLSTLEDLNTRWKLLQVSV 324 (966)
T ss_pred cCCC--hhhHhhHHHHHHHHHHHHHHH
Confidence 2222 233446799999999777654
No 165
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=29.84 E-value=9.3e+02 Score=27.92 Aligned_cols=53 Identities=11% Similarity=0.072 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 421 IAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDAL 473 (585)
Q Consensus 421 Ve~ER~gRLaKL~EL~~~V~aLE~Al~~rse~lr~s~~tQqL~lAv~AL~saL 473 (585)
+..+......++..+..+++.+++-+.........+.......-.+..++..|
T Consensus 440 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 492 (650)
T TIGR03185 440 SEAEIEELLRQLETLKEAIEALRKTLDEKTKQKINAFELERAITIADKAKKTL 492 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 44566666677777777777777766665555544544444434444444444
No 166
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=29.74 E-value=9.2e+02 Score=27.81 Aligned_cols=110 Identities=16% Similarity=0.088 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCCCCc
Q 007907 417 IAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKD 496 (585)
Q Consensus 417 I~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~rse~lr~s~~tQqL~lAv~AL~saL~sg~PL~~EL~aLke~A~g~~~D 496 (585)
+.++++.|+..-...|+.+..++.-.-+....-+..+++ .|+=.-|++-|..- +++||..|+.....
T Consensus 326 l~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrr---fq~ekeatqELiee------lrkelehlr~~kl~---- 392 (502)
T KOG0982|consen 326 LADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRR---FQEEKEATQELIEE------LRKELEHLRRRKLV---- 392 (502)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHH------HHHHHHHHHHHHHH----
Confidence 678888999888888999998888877776666666665 33333444444433 47788888775422
Q ss_pred hHHHHHHhcCChhHhhcCCCCHHHHHHHHHHHHhccccccccCCC-CCcHHHH
Q 007907 497 SVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPG-GGGILTH 548 (585)
Q Consensus 497 ~LV~aaIsSLPeeA~qrGV~T~~qL~~RF~kV~~~vRraSLVPe~-gAGvlsH 548 (585)
-+-.-..++. .-...|-+--++++..-|.++=-.++ +|-|++.
T Consensus 393 ---~a~p~rgrsS------aRe~eleqevkrLrq~nr~l~eqneelngtilTl 436 (502)
T KOG0982|consen 393 ---LANPVRGRSS------AREIELEQEVKRLRQPNRILSEQNEELNGTILTL 436 (502)
T ss_pred ---hhccccCchh------HHHHHHHHHHHHhccccchhhhhhhhhhhhhhhH
Confidence 1101111111 12344555555677777777666664 3445443
No 167
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=29.58 E-value=7.9e+02 Score=27.00 Aligned_cols=37 Identities=30% Similarity=0.551 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHH
Q 007907 437 LHINALCMAFYARSEEAR--KSYFAHKLALGALALEDAL 473 (585)
Q Consensus 437 ~~V~aLE~Al~~rse~lr--~s~~tQqL~lAv~AL~saL 473 (585)
.+|=.+|-++...+...+ ..|-+=+||+|-.-+++.|
T Consensus 186 l~VCeVCGa~L~~~D~d~RlaDHf~GKlHlGy~~iR~~l 224 (319)
T KOG0796|consen 186 LRVCEVCGAFLSVNDADRRLADHFGGKLHLGYVLIREKL 224 (319)
T ss_pred hhHHHhhhHHHhccchHHHHHHhhcchHHHHHHHHHHHH
Confidence 455566666666553322 3455667777777777666
No 168
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=29.44 E-value=1.4e+03 Score=29.82 Aligned_cols=33 Identities=9% Similarity=0.058 Sum_probs=20.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007907 324 RQAELDGRAFAEEKRALKEKYEKELRDSRAREL 356 (585)
Q Consensus 324 ~Qae~Da~~~~Eelk~L~ekfEkeLk~~ra~El 356 (585)
+--+++.....+++..|..+-...+..+.-++.
T Consensus 1500 ~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~ 1532 (1758)
T KOG0994|consen 1500 EVLALELPLTPEQIQQLTGEIQERVASLPNVDA 1532 (1758)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHHhcccHHH
Confidence 334566666777777777776666555444444
No 169
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=29.38 E-value=9.4e+02 Score=27.84 Aligned_cols=50 Identities=10% Similarity=0.067 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHH
Q 007907 416 EIAASIAREKVA--------QIEKMAEANLHINALCMAFYARSEEAR-KSYFAHKLALG 465 (585)
Q Consensus 416 EI~eaVe~ER~g--------RLaKL~EL~~~V~aLE~Al~~rse~lr-~s~~tQqL~lA 465 (585)
|..+++.+-|.. +-+-|++...+|=++-.++......+| +-|++||+-.-
T Consensus 368 e~~eklkKKrssv~gtl~vahgsslDdVD~kIleak~al~evtt~lrErl~RWqQIE~l 426 (575)
T KOG4403|consen 368 EMAEKLKKKRSSVFGTLHVAHGSSLDDVDHKILEAKSALSEVTTLLRERLHRWQQIESL 426 (575)
T ss_pred HHHHHHHHhhcchheeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555543 334477777777666666665554443 34577777543
No 170
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=29.30 E-value=9.1e+02 Score=27.61 Aligned_cols=17 Identities=35% Similarity=0.356 Sum_probs=9.3
Q ss_pred HHHhhhhhhHHHHHHHH
Q 007907 321 AEQRQAELDGRAFAEEK 337 (585)
Q Consensus 321 ae~~Qae~Da~~~~Eel 337 (585)
.+|+++|+.-.+...|+
T Consensus 95 ~~k~~~e~er~~~~~El 111 (499)
T COG4372 95 GEKRAAETEREAARSEL 111 (499)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46778887433333333
No 171
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=29.29 E-value=9.1e+02 Score=27.66 Aligned_cols=19 Identities=5% Similarity=0.004 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007907 419 ASIAREKVAQIEKMAEANL 437 (585)
Q Consensus 419 eaVe~ER~gRLaKL~EL~~ 437 (585)
..|+.+|..++.+|+.+..
T Consensus 249 ~Sle~q~~~s~~qldkL~k 267 (447)
T KOG2751|consen 249 DSLEAQIEYSQAQLDKLRK 267 (447)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3466677777777766653
No 172
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=28.89 E-value=9.5e+02 Score=27.70 Aligned_cols=27 Identities=33% Similarity=0.372 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 363 AILEKELKRERAKAAATIKSLQEKMEE 389 (585)
Q Consensus 363 a~lreELEkEraklAaalKalee~lee 389 (585)
..|+.|.++-|.-++.+.|..++++.+
T Consensus 256 ~~l~~EveRlrt~l~~Aqk~~~ek~~q 282 (552)
T KOG2129|consen 256 DKLQAEVERLRTYLSRAQKSYQEKLMQ 282 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666665555555555433
No 173
>PRK12705 hypothetical protein; Provisional
Probab=28.73 E-value=9.6e+02 Score=27.73 Aligned_cols=7 Identities=43% Similarity=0.771 Sum_probs=4.3
Q ss_pred CcHHHHH
Q 007907 543 GGILTHS 549 (585)
Q Consensus 543 AGvlsHa 549 (585)
.++|.|.
T Consensus 322 qnvl~HS 328 (508)
T PRK12705 322 QNVLSHS 328 (508)
T ss_pred chHHHHH
Confidence 4577774
No 174
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=28.33 E-value=4.5e+02 Score=23.76 Aligned_cols=14 Identities=7% Similarity=0.112 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 007907 337 KRALKEKYEKELRD 350 (585)
Q Consensus 337 lk~L~ekfEkeLk~ 350 (585)
++..-.+|+..|++
T Consensus 8 ik~aE~~~e~~L~~ 21 (103)
T PRK08404 8 IVKAEKEAEERIEK 21 (103)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344445554444
No 175
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=28.06 E-value=1.3e+03 Score=29.20 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=14.6
Q ss_pred chhhhh-hhHhhhhcccccCCCchHhHH
Q 007907 288 ATEDFI-NVMEELNNGYLSKDGKVVLDF 314 (585)
Q Consensus 288 ~~e~~~-~~~e~~~~~~~~~dgk~~~d~ 314 (585)
++|+.+ +..+.++++.. .+-|...+.
T Consensus 23 p~~~~iq~~l~~~~~~~~-~~~k~~~~~ 49 (1109)
T PRK10929 23 PDEKQITQELEQAKAAKT-PAQAEIVEA 49 (1109)
T ss_pred CCHHHHHHHHHHhhcCCC-hhhHHHHHH
Confidence 455555 66777777655 344444433
No 176
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=27.97 E-value=4.8e+02 Score=24.02 Aligned_cols=7 Identities=14% Similarity=0.249 Sum_probs=2.2
Q ss_pred hHHHHHH
Q 007907 312 LDFLQAI 318 (585)
Q Consensus 312 ~d~~~ai 318 (585)
+|+=.++
T Consensus 22 Vd~~~v~ 28 (158)
T PF03938_consen 22 VDVDKVF 28 (158)
T ss_dssp E-HHHHH
T ss_pred eeHHHHH
Confidence 3443333
No 177
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=27.95 E-value=9e+02 Score=27.14 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHHH
Q 007907 387 MEEKLRMELEQKENEA---ESKLK-NALELAKAEIAASIAR 423 (585)
Q Consensus 387 leeKLr~ELer~~eE~---eqkLk-qleE~aKaEI~eaVe~ 423 (585)
+-+-|++|+..++.+. +.++. +.-|+++ +|.|.++.
T Consensus 270 ~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaR-di~E~~Es 309 (395)
T PF10267_consen 270 LTELHQNEIYNLKQELASMEEKMAYQSYERAR-DIWEVMES 309 (395)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-HHHHHHHH
Confidence 4556666666665442 22332 3333433 35555543
No 178
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=27.18 E-value=6e+02 Score=24.81 Aligned_cols=27 Identities=11% Similarity=0.026 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 418 AASIAREKVAQIEKMAEANLHINALCMAFY 447 (585)
Q Consensus 418 ~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~ 447 (585)
...|++||.. .+.++...+..|--.+.
T Consensus 106 ~~~Ie~Ek~~---Al~elr~eva~Lav~iA 132 (154)
T PRK06568 106 IQLIQNQKST---ASKELQDEFCDEVIKLV 132 (154)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3346666654 45555666655544433
No 179
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.00 E-value=7.5e+02 Score=25.93 Aligned_cols=35 Identities=20% Similarity=0.434 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 007907 312 LDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKE 347 (585)
Q Consensus 312 ~d~~~aih~ae~~Qae~Da~~~~Eelk~L~ekfEke 347 (585)
+|||+=|..=.++.|+++.. |+..|++|-.+|-..
T Consensus 18 i~lLedi~~F~reRa~IE~E-Ya~~L~kLakky~~K 52 (264)
T cd07654 18 CDLLEDIRTYSQKKAAIERE-YGQALQKLASQFLKR 52 (264)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcc
Confidence 78999999999999999998 999999999999764
No 180
>PF07431 DUF1512: Protein of unknown function (DUF1512); InterPro: IPR009995 This family consists of several archaeal proteins of around 370 residues in length. The function of this family is unknown.
Probab=26.92 E-value=9.1e+02 Score=26.89 Aligned_cols=124 Identities=18% Similarity=0.072 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------------HHHHHHHHh---cCCCcHHHHHHHHHhhcC
Q 007907 429 IEKMAEANLHINALCMAFYARSEEARKSYFAHKLALG-------------ALALEDALS---RGLPIQKEIDTLYTYLDG 492 (585)
Q Consensus 429 LaKL~EL~~~V~aLE~Al~~rse~lr~s~~tQqL~lA-------------v~AL~saL~---sg~PL~~EL~aLke~A~g 492 (585)
..++.-+..-+.+|...++--+.+...++.++++.+- ++|+..++. .|.|+++ +.|
T Consensus 115 ~s~~~~~lei~~~ln~IyKvvrHy~~lakK~~n~~Li~qLqm~lP~i~e~aea~~~A~~aF~~G~PIGD--------gaG 186 (355)
T PF07431_consen 115 VSNIETALEIARSLNMIYKVVRHYLLLAKKTNNWYLIMQLQMLLPLIMEQAEAYNEAVDAFSKGQPIGD--------GAG 186 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--------Ccc
Confidence 4455555556666777777677777777766655332 233343333 4666665 223
Q ss_pred CCCchHHHHHHhcCCh--hHhhcCCCCHHHHHHHHHHHHhccccccccCCCCC----cHHHHHHHHHHhhcccccCCCcc
Q 007907 493 IEKDSVLDLVLSSLPE--ETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGG----GILTHSLAHIASWLKVHQVSGLS 566 (585)
Q Consensus 493 ~~~D~LV~aaIsSLPe--eA~qrGV~T~~qL~~RF~kV~~~vRraSLVPe~gA----GvlsHalS~v~S~LlFk~~~pis 566 (585)
|||..-+-.-.+ +..+.=++++- .=+.||+-+|-..|. |-++-++.++++.+.-+.+--|+
T Consensus 187 ----PLVA~~l~~~~~~~~~~~dtv~~e~---------~~egRrv~viKA~GPGstVGrpgeave~i~~~~~~k~~~IIT 253 (355)
T PF07431_consen 187 ----PLVAGRLMENCSKWEIAKDTVIAEC---------EFEGRRVYVIKAEGPGSTVGRPGEAVEYIVEKLGGKVDLIIT 253 (355)
T ss_pred ----hHHHHHHHhcCcccccccccEEEEE---------EECCcEEEEEeccCCCccCCChHHHHHHHHHHhcCCccEEEE
Confidence 555443322211 11111112221 124689999876533 78999999999999889999999
Q ss_pred HHHHHHh
Q 007907 567 IIVALQL 573 (585)
Q Consensus 567 ~~~~~~~ 573 (585)
+|+||.+
T Consensus 254 VDAALKL 260 (355)
T PF07431_consen 254 VDAALKL 260 (355)
T ss_pred ehhhhhc
Confidence 9999865
No 181
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=26.76 E-value=1.2e+03 Score=28.32 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 007907 347 ELRDSRARELMRTEEAAILEKELKRERAK 375 (585)
Q Consensus 347 eLk~~ra~El~~aee~a~lreELEkErak 375 (585)
.|..+-..+-.|..+...|+.||++++-+
T Consensus 458 ~l~~~~~~eq~yskQVeeLKtELE~EkLK 486 (786)
T PF05483_consen 458 QLTTIKESEQHYSKQVEELKTELEQEKLK 486 (786)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333334446777777777777776544
No 182
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=26.66 E-value=7.2e+02 Score=25.61 Aligned_cols=27 Identities=26% Similarity=0.115 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 007907 313 DFLQAIHAAEQRQAELDGRAFAEEKRA 339 (585)
Q Consensus 313 d~~~aih~ae~~Qae~Da~~~~Eelk~ 339 (585)
|+-..|.....+||..|...|++-++.
T Consensus 87 ev~~ki~~~~~~qa~~d~~~l~e~L~e 113 (234)
T cd07664 87 EVEEKIDQLHQDQAFADFYLFSELLGD 113 (234)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhhHHH
Confidence 344478888899999999988876553
No 183
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=26.47 E-value=1e+03 Score=27.39 Aligned_cols=19 Identities=26% Similarity=0.281 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007907 369 LKRERAKAAATIKSLQEKM 387 (585)
Q Consensus 369 LEkEraklAaalKalee~l 387 (585)
|=+++.++.++.+.++++|
T Consensus 206 LwKrmdkLe~ekr~Lq~Kl 224 (552)
T KOG2129|consen 206 LWKRMDKLEQEKRYLQKKL 224 (552)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3345556655555556655
No 184
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=26.39 E-value=1.1e+03 Score=27.70 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 007907 394 ELEQKENEAESKLKNALELA---KAEIAASIAREKVA 427 (585)
Q Consensus 394 ELer~~eE~eqkLkqleE~a---KaEI~eaVe~ER~g 427 (585)
.|+..-+..++++..|..+| ...+.+.+..-|..
T Consensus 398 kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~ 434 (594)
T PF05667_consen 398 KLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEK 434 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444444445555555555 44455555555543
No 185
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=26.36 E-value=1e+03 Score=27.28 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007907 315 LQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRAREL 356 (585)
Q Consensus 315 ~~aih~ae~~Qae~Da~~~~Eelk~L~ekfEkeLk~~ra~El 356 (585)
+..|...+-.-++.-.....+.+..|-+.++++..+-..++-
T Consensus 269 ~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek 310 (569)
T PRK04778 269 LALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEK 310 (569)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666777888888888888877444433
No 186
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=26.19 E-value=4.1e+02 Score=22.61 Aligned_cols=41 Identities=7% Similarity=0.212 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 007907 423 REKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLA 463 (585)
Q Consensus 423 ~ER~gRLaKL~EL~~~V~aLE~Al~~rse~lr~s~~tQqL~ 463 (585)
-||..+|..|..-...|..-...|...+..+++...+++..
T Consensus 27 l~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k 67 (89)
T PF00957_consen 27 LERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYK 67 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999998888888777663
No 187
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=26.03 E-value=1.1e+03 Score=27.62 Aligned_cols=9 Identities=22% Similarity=0.405 Sum_probs=4.3
Q ss_pred CcHHHHHHH
Q 007907 478 PIQKEIDTL 486 (585)
Q Consensus 478 PL~~EL~aL 486 (585)
-|.+||..+
T Consensus 308 ~L~~EL~~~ 316 (546)
T PF07888_consen 308 LLRKELSDA 316 (546)
T ss_pred HHHHHHHHH
Confidence 345555443
No 188
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=26.00 E-value=1.2e+03 Score=27.98 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 007907 411 ELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARS 450 (585)
Q Consensus 411 E~aKaEI~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~rs 450 (585)
+|...|+ .+|--||+.+.++|-+|...|+=-||.-+.|.
T Consensus 395 RFTRvEM-aRVLMeRNqYKErLMELqEavrWTEMiRAsre 433 (832)
T KOG2077|consen 395 RFTRVEM-ARVLMERNQYKERLMELQEAVRWTEMIRASRE 433 (832)
T ss_pred hhHHHHH-HHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhc
Confidence 3444433 46889999999999999999988887766655
No 189
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=25.70 E-value=3.9e+02 Score=26.00 Aligned_cols=61 Identities=16% Similarity=0.312 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCCCCchHHHHHHhcCChhHhhcCCCCHHHHHHHHHHHH
Q 007907 458 FAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALK 529 (585)
Q Consensus 458 ~tQqL~lAv~AL~saL~sg~PL~~EL~aLke~A~g~~~D~LV~aaIsSLPeeA~qrGV~T~~qL~~RF~kV~ 529 (585)
.+-.|=.++..++..+.++.|+...|..|...-.+ .+.+.+.+..|... ..+|..||-.++
T Consensus 87 TiSeLKT~vy~i~q~l~~~~P~Ee~Lrql~~~~~~---~~~~~a~l~qi~~~--------l~~Ll~RY~lL~ 147 (148)
T PF12486_consen 87 TISELKTAVYQIQQSLNQSVPLEEQLRQLQQQKEQ---GQPPSALLKQIDNR--------LNQLLSRYALLK 147 (148)
T ss_pred eHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCChHHHHHHHHHH--------HHHHHHHHHHHh
Confidence 45667789999999998899999999998776443 34444666666544 346777776553
No 190
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.56 E-value=7e+02 Score=25.05 Aligned_cols=30 Identities=7% Similarity=-0.023 Sum_probs=25.2
Q ss_pred HhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 007907 311 VLDFLQAIHAAEQRQAELDGRAFAEEKRAL 340 (585)
Q Consensus 311 ~~d~~~aih~ae~~Qae~Da~~~~Eelk~L 340 (585)
+=|+...|...+.+||..|...|++-++.-
T Consensus 69 lse~~e~i~~~~~~~a~~d~~~Lg~~L~~Y 98 (198)
T cd07630 69 LSEALEEAKENIEVVAGNNENTLGLTLDLY 98 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 447788899999999999999988887654
No 191
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=25.43 E-value=7.2e+02 Score=25.19 Aligned_cols=28 Identities=18% Similarity=0.103 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007907 430 EKMAEANLHINALCMAFYARSEEARKSY 457 (585)
Q Consensus 430 aKL~EL~~~V~aLE~Al~~rse~lr~s~ 457 (585)
..+.+....+..|+.....+-+.+...|
T Consensus 105 s~I~e~V~~ikrL~~~qekrqekL~~kh 132 (185)
T PF08703_consen 105 SHIQEVVQEIKRLEEKQEKRQEKLEEKH 132 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666555555
No 192
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=25.04 E-value=6.5e+02 Score=26.84 Aligned_cols=49 Identities=10% Similarity=0.200 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 007907 328 LDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKA 376 (585)
Q Consensus 328 ~Da~~~~Eelk~L~ekfEkeLk~~ra~El~~aee~a~lreELEkErakl 376 (585)
.|..-+...++.....-..++..++..=.....+.+.|+.-+++.+.++
T Consensus 158 ~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~EL 206 (267)
T PF10234_consen 158 LELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQEL 206 (267)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444466677777666666666533333355555566666666666665
No 193
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=24.44 E-value=1e+03 Score=26.66 Aligned_cols=9 Identities=11% Similarity=0.589 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q 007907 421 IAREKVAQI 429 (585)
Q Consensus 421 Ve~ER~gRL 429 (585)
++.+|..++
T Consensus 98 ~E~~R~~~l 106 (473)
T PF14643_consen 98 LEKERADKL 106 (473)
T ss_pred HHHHHHHHH
Confidence 445555444
No 194
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=24.41 E-value=6.8e+02 Score=24.55 Aligned_cols=105 Identities=17% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 330 GRAFAEEKRALKEKYEKELRD------SRAREL--MRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENE 401 (585)
Q Consensus 330 a~~~~Eelk~L~ekfEkeLk~------~ra~El--~~aee~a~lreELEkEraklAaalKalee~leeKLr~ELer~~eE 401 (585)
|.....++..+...|..+.=. ++.+|+ .++..-.....|++.-+.....=+..++..-+.+.+.+.+...
T Consensus 5 A~~Ig~EfE~lId~~G~e~v~~LmP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~-- 82 (158)
T PF09744_consen 5 ASSIGKEFERLIDRYGEEAVKGLMPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLE-- 82 (158)
T ss_pred HHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007907 402 AESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSE 451 (585)
Q Consensus 402 ~eqkLkqleE~aKaEI~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~rse 451 (585)
+.+....|+..-..+++.+....+.|+..+...++
T Consensus 83 ---------------~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~ 117 (158)
T PF09744_consen 83 ---------------LEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSD 117 (158)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
No 195
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=24.22 E-value=1.2e+03 Score=27.37 Aligned_cols=32 Identities=13% Similarity=0.224 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 417 IAASIAREKVAQIEKMAEANLHINALCMAFYA 448 (585)
Q Consensus 417 I~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~ 448 (585)
+...+.+|+....=+|.+.+-.|..|..++.-
T Consensus 397 L~~ql~ke~D~n~vqlsE~~rel~Elks~lrv 428 (546)
T PF07888_consen 397 LEKQLGKEKDCNRVQLSENRRELQELKSSLRV 428 (546)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888887888888888888876543
No 196
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=24.13 E-value=6.6e+02 Score=24.25 Aligned_cols=6 Identities=17% Similarity=-0.042 Sum_probs=2.5
Q ss_pred HHHHHH
Q 007907 421 IAREKV 426 (585)
Q Consensus 421 Ve~ER~ 426 (585)
++.||.
T Consensus 127 ie~Ek~ 132 (167)
T PRK08475 127 MEFEVR 132 (167)
T ss_pred HHHHHH
Confidence 444444
No 197
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.00 E-value=7.7e+02 Score=26.52 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=13.8
Q ss_pred HhhcCCCCHHHHHHHHHHH
Q 007907 510 TRYHGTETLLQLNQKFDAL 528 (585)
Q Consensus 510 A~qrGV~T~~qL~~RF~kV 528 (585)
..++|-.|-..|.+.=|.+
T Consensus 269 IkqrGRVSIaelAe~SN~l 287 (299)
T KOG3054|consen 269 IKQRGRVSIAELAEKSNQL 287 (299)
T ss_pred HHHcCceeHHHHHHhhcch
Confidence 4678888888887765544
No 198
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=23.99 E-value=3.5e+02 Score=31.72 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 007907 364 ILEKELKRERAKA 376 (585)
Q Consensus 364 ~lreELEkErakl 376 (585)
+.++.||++.++.
T Consensus 493 ~~r~tlE~k~~~n 505 (588)
T KOG3612|consen 493 EMRKTLEQKHAEN 505 (588)
T ss_pred HHHHHHHHHHHHH
Confidence 3355555555554
No 199
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=23.96 E-value=6.5e+02 Score=24.17 Aligned_cols=8 Identities=38% Similarity=0.314 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 007907 421 IAREKVAQ 428 (585)
Q Consensus 421 Ve~ER~gR 428 (585)
++.||..-
T Consensus 111 I~~e~~~a 118 (161)
T COG0711 111 IEAEKERA 118 (161)
T ss_pred HHHHHHHH
Confidence 44444443
No 200
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=23.88 E-value=9.1e+02 Score=25.81 Aligned_cols=68 Identities=12% Similarity=0.104 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHhcCCCcHHHHHH
Q 007907 418 AASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALED---ALSRGLPIQKEIDT 485 (585)
Q Consensus 418 ~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~rse~lr~s~~tQqL~lAv~AL~s---aL~sg~PL~~EL~a 485 (585)
...|++....+-.=|.++...-..+.......+....+....|.|..|..++.. .|..|.-|-..|..
T Consensus 253 ~~~i~~~~~~Q~~ll~~i~~~n~~f~~~~~~~~~~~~re~~lq~L~~Ay~~y~el~~nl~eG~kFY~dL~~ 323 (339)
T cd09235 253 QKQVQESLSRQESLLANIQVAHQEFSKEKQSNSGANEREEVLKDLAAAYDAFMELTANLKEGTKFYNDLTE 323 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334444444444444444444444433333333333444566666666655433 33446666666553
No 201
>PRK10884 SH3 domain-containing protein; Provisional
Probab=23.51 E-value=7.9e+02 Score=24.97 Aligned_cols=10 Identities=20% Similarity=0.149 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 007907 434 EANLHINALC 443 (585)
Q Consensus 434 EL~~~V~aLE 443 (585)
.+..++..|+
T Consensus 150 ~~~~~~~~l~ 159 (206)
T PRK10884 150 VAQKKVDAAN 159 (206)
T ss_pred HHHHHHHHHH
Confidence 3344444333
No 202
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=23.06 E-value=89 Score=33.34 Aligned_cols=57 Identities=16% Similarity=0.029 Sum_probs=38.0
Q ss_pred CccccccccccccccCCCC--CCCCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhchhh
Q 007907 24 PSIISARKEYSTASQKNVS--PKPGPTGKPPESGSNFSPIIFGATVVVGVGLIAYQNGYLD 82 (585)
Q Consensus 24 p~~l~~~~~~~~~~~~~~~--~~~~~~~~p~~s~~~~~k~~~g~~~v~~~~~~ayq~g~ld 82 (585)
+.++..+..+..+-+++.- .++.+.++|.++|..-.+-++++.++++++.+||. |++
T Consensus 37 ~~~~~~~~~s~~~~~p~~~~~~~~~~~~~~~r~gp~~w~~~~~t~Alg~~~~g~~~--Y~~ 95 (280)
T KOG2792|consen 37 KRLLETNGLSPLARSPVDRSQGGPIESGKPGRPGPFSWRSLLATFALGLGLGGALA--YLK 95 (280)
T ss_pred ceeeccCCCCCccCCCcchhcCCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHH--HHH
Confidence 4444555555554444442 36777888888877777777888888888887774 555
No 203
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=22.99 E-value=1.6e+03 Score=28.47 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007907 333 FAEEKRALKEKYEKELR 349 (585)
Q Consensus 333 ~~Eelk~L~ekfEkeLk 349 (585)
|.++.+.+....|..+.
T Consensus 867 ~~~qs~qln~p~ed~~~ 883 (1283)
T KOG1916|consen 867 FNEQSQQLNHPMEDLLP 883 (1283)
T ss_pred HHHHHhhhcCChhhHHH
Confidence 55555555555554444
No 204
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.79 E-value=6e+02 Score=23.44 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=23.1
Q ss_pred hHhHHHHHHHH-----HHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007907 310 VVLDFLQAIHA-----AEQRQAELDGRAFAEEKRALKEKYEKELRD 350 (585)
Q Consensus 310 ~~~d~~~aih~-----ae~~Qae~Da~~~~Eelk~L~ekfEkeLk~ 350 (585)
++|.+++|+-+ +..||++.|-. +.+..|+-.++.
T Consensus 40 l~lS~~Aa~~ap~IlmsQNRq~~~dr~-------ra~~D~~inl~a 78 (108)
T PF06210_consen 40 LVLSLEAAYQAPLILMSQNRQAARDRL-------RAELDYQINLKA 78 (108)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHH-------HHHHHHHHHHHh
Confidence 57777777655 67888888733 455666666664
No 205
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=22.30 E-value=1.1e+03 Score=26.08 Aligned_cols=133 Identities=13% Similarity=0.099 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH------HHHHHHhhcCC-CCchHHHHHH
Q 007907 431 KMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKE------IDTLYTYLDGI-EKDSVLDLVL 503 (585)
Q Consensus 431 KL~EL~~~V~aLE~Al~~rse~lr~s~~tQqL~lAv~AL~saL~sg~PL~~E------L~aLke~A~g~-~~D~LV~aaI 503 (585)
.|++++.+|..|..-+-..-. +.+.++.+.-+-+..++.|+.+. |+.++..+... -.+.++..+.
T Consensus 6 ~L~~lR~~ID~ID~~ii~Ll~--------~R~~~~~~I~~~K~~~~~pi~dp~RE~~vl~~~~~~a~~~~l~~~~i~~if 77 (386)
T PRK10622 6 PLLALREKISALDEKLLALLA--------ERRELAVEVAKAKLLSHRPVRDIDRERDLLERLITLGKAHHLDAHYITRLF 77 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhCCCCCcChHHHHHHHHHHHHhcccCCCCHHHHHHHH
Confidence 466777777777665443221 22223333334444456555422 23344444211 1344666666
Q ss_pred hcCChhHhhcCCCCHHHHHHHHHHHHhccccccccCCCCCcHHHHHHHHHHhhcccccCC---CccHHHHHHhhhh
Q 007907 504 SSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIASWLKVHQVS---GLSIIVALQLICH 576 (585)
Q Consensus 504 sSLPeeA~qrGV~T~~qL~~RF~kV~~~vRraSLVPe~gAGvlsHalS~v~S~LlFk~~~---pis~~~~~~~~~~ 576 (585)
..|=......-. ..+...+..+.....+++++-|. |-++|..+.-+....|.+.. --++.+|+.-+..
T Consensus 78 ~~ii~~S~~~Q~---~~~~~~~~~~~~~~~~va~lGp~--GtfSh~Aa~~~~~~~~~~~~~~~~~s~~~v~~av~~ 148 (386)
T PRK10622 78 QLIIEDSVLTQQ---ALLQQHLNKTNPHSARIAFLGPK--GSYSHLAARQYAARHFEQFIESGCAKFADIFNQVET 148 (386)
T ss_pred HHHHHHHHHHhh---hhhhccccccccccceEEEECCC--CcHHHHHHHHhhccccccccccCCCCHHHHHHHHHC
Confidence 655433221111 22333333444455789999875 78888877654322222211 2366777766653
No 206
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=22.29 E-value=5.4e+02 Score=22.65 Aligned_cols=14 Identities=14% Similarity=0.332 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 007907 337 KRALKEKYEKELRD 350 (585)
Q Consensus 337 lk~L~ekfEkeLk~ 350 (585)
+...+..-.+.|++
T Consensus 20 V~~Ar~~r~~~lk~ 33 (105)
T PF03179_consen 20 VEEARKEREQRLKQ 33 (105)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 207
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=22.15 E-value=1e+03 Score=29.62 Aligned_cols=12 Identities=25% Similarity=0.235 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 007907 332 AFAEEKRALKEK 343 (585)
Q Consensus 332 ~~~Eelk~L~ek 343 (585)
+.++.|...++.
T Consensus 218 ~~qe~La~~qe~ 229 (1064)
T KOG1144|consen 218 AMQEALAKRQEE 229 (1064)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 208
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=21.99 E-value=1.4e+03 Score=27.28 Aligned_cols=33 Identities=12% Similarity=-0.014 Sum_probs=23.2
Q ss_pred hHHHHHHhcCChhHhhcC---CCCHHHHHHHHHHHH
Q 007907 497 SVLDLVLSSLPEETRYHG---TETLLQLNQKFDALK 529 (585)
Q Consensus 497 ~LV~aaIsSLPeeA~qrG---V~T~~qL~~RF~kV~ 529 (585)
.-+..+|..|...+...= --|..+.++.|..+.
T Consensus 1010 ~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~~~F 1045 (1179)
T TIGR02168 1010 EDLTEAKETLEEAIEEIDREARERFKDTFDQVNENF 1045 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888887777665 677777777776544
No 209
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.98 E-value=1.7e+03 Score=28.28 Aligned_cols=159 Identities=11% Similarity=0.025 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhHHHH---------------------HHHHHHHHHHHHHHHHHHH
Q 007907 329 DGRAFAEEKRALKEKYEKELRDSRAREL------MRTEEA---------------------AILEKELKRERAKAAATIK 381 (585)
Q Consensus 329 Da~~~~Eelk~L~ekfEkeLk~~ra~El------~~aee~---------------------a~lreELEkEraklAaalK 381 (585)
+...|.+.|..+.++|+....+....+. .+.+.+ ..|..+|+.....+...++
T Consensus 633 ~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~~~~ 712 (1311)
T TIGR00606 633 GSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLK 712 (1311)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHHHhcchhhHH
Q ss_pred HHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Q 007907 382 SLQEKMEE---------KLRMELEQKENEAESKLKNALELAKAEIAASIAREK---VAQIEKMAEANLHINALCMAFYAR 449 (585)
Q Consensus 382 alee~lee---------KLr~ELer~~eE~eqkLkqleE~aKaEI~eaVe~ER---~gRLaKL~EL~~~V~aLE~Al~~r 449 (585)
.+...+.. .++.............+..+++.... +...+...+ ......|..+...+..++.++..-
T Consensus 713 ~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~-le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v 791 (1311)
T TIGR00606 713 STESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQK-VNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDV 791 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC------cHHHHHHHHH
Q 007907 450 SEEARKSYFAHKLALGALALEDALSRGLP------IQKEIDTLYT 488 (585)
Q Consensus 450 se~lr~s~~tQqL~lAv~AL~saL~sg~P------L~~EL~aLke 488 (585)
+...+....+..|--.+..+...+....+ |..++..+..
T Consensus 792 ~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~ 836 (1311)
T TIGR00606 792 TIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQH 836 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHH
No 210
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=21.97 E-value=6.1e+02 Score=23.34 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007907 360 EEAAILEKELKRERAKAAATI 380 (585)
Q Consensus 360 ee~a~lreELEkEraklAaal 380 (585)
|++..|++.|+++......+|
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~i 92 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKEI 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555444443333
No 211
>PRK11637 AmiB activator; Provisional
Probab=21.91 E-value=1.1e+03 Score=25.88 Aligned_cols=11 Identities=9% Similarity=0.087 Sum_probs=5.3
Q ss_pred hhhhcceeeEe
Q 007907 573 LICHYQYFFTI 583 (585)
Q Consensus 573 ~~~~~~y~~~~ 583 (585)
+|.|...|+|+
T Consensus 364 ii~hg~g~~t~ 374 (428)
T PRK11637 364 VVEHGKGDMSL 374 (428)
T ss_pred EEEeCCCcEEE
Confidence 34455545543
No 212
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=21.64 E-value=1.3e+03 Score=26.62 Aligned_cols=205 Identities=22% Similarity=0.235 Sum_probs=0.0
Q ss_pred chhhhhhhHhhhhcccccCCCchHhHHHHHHHHHHHhhhhhhHH-HHHHHHHHHHHHHHH---HHHH----HHHHHhhhH
Q 007907 288 ATEDFINVMEELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGR-AFAEEKRALKEKYEK---ELRD----SRARELMRT 359 (585)
Q Consensus 288 ~~e~~~~~~e~~~~~~~~~dgk~~~d~~~aih~ae~~Qae~Da~-~~~Eelk~L~ekfEk---eLk~----~ra~El~~a 359 (585)
+.|+.-..--+|.+--.-.+|.+-+..+.----++.+|-++|.+ ++.++++.|..+.|- ++++ .|..+-.+.
T Consensus 250 LsE~~~k~~q~Le~~~~~~~~~~P~t~~~~~~~~e~~~~~sD~~~~L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~ 329 (593)
T KOG4807|consen 250 LSEEIEKKWQELEKLPLRENKRVPLTALLNQSRGERRGPPSDGHEALEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHI 329 (593)
T ss_pred HHHHHHHHHHHHHhhhhhhcCCCCccccCCCccccccCCCCcchHHHHHHHHHHHHHHHHHHHhccCchhhHhhhhhccC
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-------
Q 007907 360 EEAAILEKELKRERAKA-AATIKSLQEKMEEKLRMELEQKENEAESKLKN-------ALELAKAEIAASIARE------- 424 (585)
Q Consensus 360 ee~a~lreELEkErakl-AaalKalee~leeKLr~ELer~~eE~eqkLkq-------leE~aKaEI~eaVe~E------- 424 (585)
-..-.++.--|+-.+.. ..+.|..++ +...|+.||+++.+|..+=|-+ .-|..|.-..+.++.|
T Consensus 330 ~~~~~~qatCERgfAaMEetHQkkiEd-LQRqHqRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSv 408 (593)
T KOG4807|consen 330 PPGYISQATCERGFAAMEETHQKKIED-LQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSV 408 (593)
T ss_pred CccHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhcc
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHhcCC-----------CcHHHHHHHHH
Q 007907 425 ----KVAQIEKMAEANLHINALCMAFYARS-EEARKSYFAHKLALGALALEDALSRGL-----------PIQKEIDTLYT 488 (585)
Q Consensus 425 ----R~gRLaKL~EL~~~V~aLE~Al~~rs-e~lr~s~~tQqL~lAv~AL~saL~sg~-----------PL~~EL~aLke 488 (585)
-+-|...|.++.+=-..|+-+-...+ .-+...|-+|+|-.--.+|+.--.-+. -|..||..|+.
T Consensus 409 nsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRt 488 (593)
T KOG4807|consen 409 NSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRT 488 (593)
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred hhcCCCCc
Q 007907 489 YLDGIEKD 496 (585)
Q Consensus 489 ~A~g~~~D 496 (585)
+..| |
T Consensus 489 lltg---d 493 (593)
T KOG4807|consen 489 LLTG---D 493 (593)
T ss_pred Hhcc---C
No 213
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=21.56 E-value=1.7e+03 Score=28.26 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 007907 429 IEKMAEANLHINALCMAFYARS 450 (585)
Q Consensus 429 LaKL~EL~~~V~aLE~Al~~rs 450 (585)
..++.+++.++..+++-+....
T Consensus 308 ~~k~~~~r~k~teiea~i~~~~ 329 (1074)
T KOG0250|consen 308 QGKIEEARQKLTEIEAKIGELK 329 (1074)
T ss_pred HHHHHHHhhhhhHHHHHHHHHH
Confidence 4445555555555555544433
No 214
>PF10444 Nbl1_Borealin_N: Nbl1 / Borealin N terminal; InterPro: IPR018851 This entry represents the N-terminal domain of borealin, and is also found in the N-terminal-Borealin-like (NBL; YHR199C-A) protein from Saccharomyces cerevisiae (Baker's yeast). NBL is a subunit of the conserved chromosomal passenger complex (CPC; Ipl1p-Sli15p-Bir1p-Nbl1p), which regulates mitotic chromosome segregation. It is not required for the kinase activity of the complex and it mediates the interaction of Sli15p and Bir1p [].; PDB: 2RAW_B 2RAX_Y 2QFA_B.
Probab=21.48 E-value=1.9e+02 Score=23.51 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHH
Q 007907 337 KRALKEKYEKELRD-SRARELMRTEEAAILEKELKRERAKA 376 (585)
Q Consensus 337 lk~L~ekfEkeLk~-~ra~El~~aee~a~lreELEkErakl 376 (585)
+..+.+.||.++.. +++....+...+..++..++-+..++
T Consensus 3 ~~~~l~~fd~Ev~~r~~~lr~~~~~~~~~~~~~~~~~l~ri 43 (59)
T PF10444_consen 3 KQAFLQNFDLEVEERIRRLRAQYENLLQSLRNRLEMELLRI 43 (59)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44556677777766 33333344444455555554444443
No 215
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=21.19 E-value=1.3e+02 Score=30.28 Aligned_cols=19 Identities=21% Similarity=0.039 Sum_probs=15.3
Q ss_pred chhhHHHHHHHHHHHHhch
Q 007907 62 IFGATVVVGVGLIAYQNGY 80 (585)
Q Consensus 62 ~~g~~~v~~~~~~ayq~g~ 80 (585)
||||.|++-++||-..++|
T Consensus 163 FiGGIVL~LGv~aI~ff~~ 181 (186)
T PF05283_consen 163 FIGGIVLTLGVLAIIFFLY 181 (186)
T ss_pred hhhHHHHHHHHHHHHHHHh
Confidence 5888888888888777777
No 216
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.03 E-value=1.5e+03 Score=27.20 Aligned_cols=148 Identities=21% Similarity=0.223 Sum_probs=0.0
Q ss_pred CchHhHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHHHHHHHH----HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 308 GKVVLDFLQAIHAAEQRQAELDGRAFAE-EKRALKEKYEKELRD----SRARELMRTEEAAILEKELKRERAKAAATIKS 382 (585)
Q Consensus 308 gk~~~d~~~aih~ae~~Qae~Da~~~~E-elk~L~ekfEkeLk~----~ra~El~~aee~a~lreELEkEraklAaalKa 382 (585)
|.++-|-+.-+.+|-.+--+.--+.+.. ++-...+++-..|.. .+.+=+.--++..-||-=|+.-+.-...++-.
T Consensus 562 ~~~i~~qik~lq~av~~~~~~~~q~~~s~e~~~~~dk~~e~l~~~ilklksllstkreqi~tlrtvlkankqtaevaltn 641 (772)
T KOG0999|consen 562 IAIISDQIKHLQKAVDHTKELSRQRIASQELGPAADKDKEALMEQILKLKSLLSTKREQITTLRTVLKANKQTAEVALTN 641 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q ss_pred HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 007907 383 LQEKMEE----------KLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEE 452 (585)
Q Consensus 383 lee~lee----------KLr~ELer~~eE~eqkLkqleE~aKaEI~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~rse~ 452 (585)
+..+|+. |+|+||+.+++.+.-=- .+..-...-=.....+|++++.++.+-|.--+..+..
T Consensus 642 lksKYEnEK~mvtetm~KlRnELk~Lkedaatfs---------slramf~~R~ee~~tq~de~~~ql~aaedekKtln~l 712 (772)
T KOG0999|consen 642 LKSKYENEKAMVTETMDKLRNELKALKEDAATFS---------SLRAMFAARCEEYVTQLDELQRQLAAAEDEKKTLNQL 712 (772)
T ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHhcchHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 007907 453 ARKSYFAHKLALG 465 (585)
Q Consensus 453 lr~s~~tQqL~lA 465 (585)
+|-..+ |+|++.
T Consensus 713 lrmaiq-qklalt 724 (772)
T KOG0999|consen 713 LRMAIQ-QKLALT 724 (772)
T ss_pred HHHHHH-HHHHHH
No 217
>PRK14148 heat shock protein GrpE; Provisional
Probab=21.03 E-value=8.8e+02 Score=24.60 Aligned_cols=73 Identities=14% Similarity=0.046 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhc-----CC-CcHHHHHHHHHhhcCCCCchHHHHH
Q 007907 429 IEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSR-----GL-PIQKEIDTLYTYLDGIEKDSVLDLV 502 (585)
Q Consensus 429 LaKL~EL~~~V~aLE~Al~~rse~lr~s~~tQqL~lAv~AL~saL~s-----g~-PL~~EL~aLke~A~g~~~D~LV~aa 502 (585)
-.=+.+|.-=+..|++|+..-.. +.....|..|+.-+...|.+ |. +|. . .+. .=||-++-|
T Consensus 90 ~~~~~~LLpV~DnlerAl~~~~~----~~~~~~l~~Gv~mi~k~l~~vL~k~Gv~~I~----~---~G~--~FDP~~HEA 156 (195)
T PRK14148 90 EKFAKELLPVIDSIEQALKHEVK----LEEAIAMKEGIELTAKMLVDILKKNGVEELD----P---KGE--KFDPNLHEA 156 (195)
T ss_pred HHHHHHHhhHHhHHHHHHhcccc----chhHHHHHHHHHHHHHHHHHHHHHCCCEEeC----C---CCC--CCChhHhhe
Confidence 33456666677777777764322 12234555666665555432 21 111 0 111 348889999
Q ss_pred HhcCChhHhhcC
Q 007907 503 LSSLPEETRYHG 514 (585)
Q Consensus 503 IsSLPeeA~qrG 514 (585)
|..+|..-+..|
T Consensus 157 v~~~~~~~~~~g 168 (195)
T PRK14148 157 MAMIPNPEFEDN 168 (195)
T ss_pred eeeeCCCCCCcC
Confidence 988886543333
No 218
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=20.94 E-value=4.9e+02 Score=26.20 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007907 360 EEAAILEKELKRERAKA 376 (585)
Q Consensus 360 ee~a~lreELEkErakl 376 (585)
++...++++++++..++
T Consensus 149 ~~a~~~~~e~~~~l~~l 165 (176)
T PF12999_consen 149 EEAKKKREELEKKLEEL 165 (176)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455555555554
No 219
>PF14223 UBN2: gag-polypeptide of LTR copia-type
Probab=20.82 E-value=5.7e+02 Score=22.41 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=26.6
Q ss_pred CCchHHHHHHhcCChhH--------hhcCCC--CHHHHHHHHHHHHh
Q 007907 494 EKDSVLDLVLSSLPEET--------RYHGTE--TLLQLNQKFDALKG 530 (585)
Q Consensus 494 ~~D~LV~aaIsSLPeeA--------~qrGV~--T~~qL~~RF~kV~~ 530 (585)
.+..+|..+|.+||+.- ...... |.++|..++..-+.
T Consensus 65 ~d~~~v~~iL~~Lp~~y~~~~~~i~~~~~~~~~t~~el~~~L~~~E~ 111 (119)
T PF14223_consen 65 SDEDLVSKILRSLPPSYDTFVTAIRNSKDLPKMTLEELISRLLAEEM 111 (119)
T ss_pred cchhHHHHHHhcCCchhHHHHHHHHhcCCCCcCCHHHHHHHHHHHHH
Confidence 56899999999999761 122444 78888888775443
No 220
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.79 E-value=1.5e+03 Score=27.06 Aligned_cols=32 Identities=9% Similarity=0.132 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 416 EIAASIAREKVAQIEKMAEANLHINALCMAFY 447 (585)
Q Consensus 416 EI~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~ 447 (585)
+....|+.||..+-..+.-+.+.+..|=.+++
T Consensus 421 d~i~~le~e~~~y~de~~kaqaevdrlLeilk 452 (654)
T KOG4809|consen 421 DQIKQLEKEASYYRDECGKAQAEVDRLLEILK 452 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666555555555555555544444
No 221
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=20.59 E-value=6.8e+02 Score=23.11 Aligned_cols=16 Identities=13% Similarity=0.283 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 007907 431 KMAEANLHINALCMAF 446 (585)
Q Consensus 431 KL~EL~~~V~aLE~Al 446 (585)
.|++|..+|..|+.-+
T Consensus 97 ev~~L~~RI~~Le~~l 112 (118)
T TIGR01837 97 EIEALSAKIEQLAVQV 112 (118)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555555443
No 222
>PLN03086 PRLI-interacting factor K; Provisional
Probab=20.14 E-value=8e+02 Score=28.85 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhccccccccC
Q 007907 520 QLNQKFDALKGTLRHFSLIP 539 (585)
Q Consensus 520 qL~~RF~kV~~~vRraSLVP 539 (585)
++.|.=..|+..+|..+=|=
T Consensus 198 di~npKavLE~~Lr~~stLT 217 (567)
T PLN03086 198 DLPNHKAVLETALRQHATLS 217 (567)
T ss_pred CcccHHHHHHHHhhcCcccc
Confidence 34443345555555554443
No 223
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=20.13 E-value=1.7e+03 Score=27.51 Aligned_cols=130 Identities=16% Similarity=0.170 Sum_probs=71.7
Q ss_pred hhhhcccccCCCchHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 007907 297 EELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKA 376 (585)
Q Consensus 297 e~~~~~~~~~dgk~~~d~~~aih~ae~~Qae~Da~~~~Eelk~L~ekfEkeLk~~ra~El~~aee~a~lreELEkErakl 376 (585)
|.-+.+|.+-| =--++|-.|.-||--|+..+-+++..++..|+.-.++ +. ...+....|+.|++.-++..
T Consensus 191 eh~~rlsdtvd------ErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~-k~---rl~~d~E~Lr~e~~qL~~~~ 260 (916)
T KOG0249|consen 191 EHNKRLSDTVD------ERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHD-KD---KLRTDIEDLRGELDQLRRSS 260 (916)
T ss_pred hhccccccccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---HHhhhHHHHHHHHHHHHHHH
Confidence 33445666655 2346889999999999999999999999888876555 11 12233333444333332110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007907 377 AATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYAR 449 (585)
Q Consensus 377 AaalKalee~leeKLr~ELer~~eE~eqkLkqleE~aKaEI~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~r 449 (585)
-..+++|-..+++-.++ .-..... + .....-.+.+|-+||+.+-....++..|++-.-+|
T Consensus 261 ----~~~~~~mrd~~~~~~e~----~~~~~~~----~-~k~S~~~rrp~~grL~~~rdep~kv~~l~~q~w~r 320 (916)
T KOG0249|consen 261 ----LEKEQELRDHLRTYAER----RRETETT----N-YKTSGVRRRPRKGRLKALRDEPEKVQTLNEQEWAR 320 (916)
T ss_pred ----HhhhhhhcchhhhhHHH----HHhhcch----h-hhhhhhhhhhhhhhHHHhhhchHHHHHHHHHHHHH
Confidence 01122233333222211 1111111 1 11344456788899998888888888887654433
Done!