Query 007907
Match_columns 585
No_of_seqs 98 out of 109
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 13:26:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007907.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007907hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dci_A Uncharacterized protein 87.6 3.9 0.00013 38.3 10.4 30 416-445 77-106 (150)
2 1f5n_A Interferon-induced guan 86.9 41 0.0014 37.1 20.1 16 417-432 531-546 (592)
3 3oja_B Anopheles plasmodium-re 86.7 10 0.00035 40.0 14.5 22 436-457 571-592 (597)
4 3vkg_A Dynein heavy chain, cyt 82.4 68 0.0023 42.3 21.3 92 427-527 2025-2134(3245)
5 2dfs_A Myosin-5A; myosin-V, in 81.1 49 0.0017 39.0 18.1 7 363-369 994-1000(1080)
6 3ghg_A Fibrinogen alpha chain; 74.5 55 0.0019 36.2 14.8 20 431-450 139-158 (562)
7 1f5n_A Interferon-induced guan 68.9 43 0.0015 36.9 12.8 24 422-445 559-582 (592)
8 4efa_E V-type proton ATPase su 66.4 92 0.0031 29.7 16.4 42 328-376 9-50 (233)
9 2fxo_A Myosin heavy chain, car 64.4 77 0.0026 28.1 17.1 24 327-350 12-35 (129)
10 3oja_B Anopheles plasmodium-re 62.7 1.6E+02 0.0053 31.0 17.2 18 430-447 537-554 (597)
11 3vkg_A Dynein heavy chain, cyt 61.7 4E+02 0.014 35.5 21.8 28 423-450 2056-2083(3245)
12 2dfs_A Myosin-5A; myosin-V, in 54.5 3.3E+02 0.011 32.2 18.3 15 332-346 925-939 (1080)
13 3ol1_A Vimentin; structural ge 51.4 1.3E+02 0.0044 26.5 11.9 79 322-409 35-113 (119)
14 3ryc_E Stathmin-4; alpha-tubul 48.7 1.7E+02 0.0059 27.2 15.4 39 416-458 98-136 (143)
15 1nfn_A Apolipoprotein E3; lipi 45.4 1.8E+02 0.0063 27.4 11.1 39 311-349 33-72 (191)
16 3mq9_A Bone marrow stromal ant 40.4 3.2E+02 0.011 28.0 16.4 33 417-449 430-462 (471)
17 4abx_A DNA repair protein RECN 38.6 2.3E+02 0.0079 25.9 12.3 29 503-532 131-159 (175)
18 2d1l_A Metastasis suppressor p 38.0 3.2E+02 0.011 27.2 18.3 27 402-428 176-202 (253)
19 3mq9_A Bone marrow stromal ant 38.0 3.5E+02 0.012 27.7 16.6 16 335-350 373-388 (471)
20 2i1j_A Moesin; FERM, coiled-co 37.4 51 0.0018 36.1 6.7 32 421-452 403-434 (575)
21 3oja_A Leucine-rich immune mol 37.1 1.5E+02 0.005 30.7 9.8 13 414-426 469-481 (487)
22 1gk4_A Vimentin; intermediate 36.7 1.8E+02 0.0062 24.0 10.5 34 361-394 34-67 (84)
23 2a01_A Apolipoprotein A-I; fou 36.1 2.2E+02 0.0075 27.6 10.3 174 301-474 43-237 (243)
24 3oja_A Leucine-rich immune mol 33.5 4.1E+02 0.014 27.3 15.3 24 421-444 447-470 (487)
25 1wlx_A Alpha-actinin 4; three- 32.6 2.9E+02 0.0098 25.1 10.8 98 426-532 4-114 (129)
26 3r2p_A Apolipoprotein A-I; amp 30.3 3.3E+02 0.011 25.1 12.6 11 340-350 83-93 (185)
27 2v71_A Nuclear distribution pr 28.7 4E+02 0.014 25.6 19.0 46 331-376 34-79 (189)
28 3o0z_A RHO-associated protein 27.9 4E+02 0.014 25.3 17.2 35 415-449 72-109 (168)
29 3mov_A Lamin-B1; LMNB1, B-type 27.3 2.9E+02 0.01 23.6 9.9 53 334-393 25-77 (95)
30 3vem_A Helicase protein MOM1; 25.5 3.7E+02 0.013 24.2 10.1 21 330-350 52-72 (115)
31 1x8y_A Lamin A/C; structural p 25.1 3E+02 0.01 22.9 9.7 54 334-394 16-69 (86)
32 4dvy_P Cytotoxicity-associated 25.1 5.6E+02 0.019 28.9 12.0 25 44-68 249-279 (876)
33 3na7_A HP0958; flagellar bioge 24.3 4.8E+02 0.017 25.1 22.8 22 520-541 176-197 (256)
34 1deq_A Fibrinogen (alpha chain 23.6 6.9E+02 0.024 26.6 15.5 16 431-446 142-157 (390)
35 1sfc_A VAMP 2, protein (synapt 22.9 3.5E+02 0.012 23.0 9.0 38 423-460 54-91 (96)
36 2ykt_A Brain-specific angiogen 22.3 5.7E+02 0.019 25.2 17.1 28 401-428 170-197 (253)
37 2p22_C Protein SRN2; endosome, 21.9 5.2E+02 0.018 24.6 10.8 92 333-428 77-171 (192)
38 3iox_A AGI/II, PA; alpha helix 21.6 8.3E+02 0.028 26.8 15.4 25 423-447 80-104 (497)
39 1gs9_A Apolipoprotein E, APOE4 20.1 5.2E+02 0.018 23.9 11.3 39 311-349 33-72 (165)
40 3hd7_A Vesicle-associated memb 20.0 3.9E+02 0.013 22.4 10.3 40 423-462 29-68 (91)
No 1
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=87.59 E-value=3.9 Score=38.26 Aligned_cols=30 Identities=10% Similarity=0.016 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 416 EIAASIAREKVAQIEKMAEANLHINALCMA 445 (585)
Q Consensus 416 EI~eaVe~ER~gRLaKL~EL~~~V~aLE~A 445 (585)
.|...+++||+.|+.+...+..+++.++.+
T Consensus 77 ~iq~q~~~ek~~r~e~k~~l~~ql~qv~~L 106 (150)
T 4dci_A 77 NIQQQVAGKRSELEEQKRNLLQQQAQVREL 106 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 478899999999999999999999888764
No 2
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=86.90 E-value=41 Score=37.09 Aligned_cols=16 Identities=6% Similarity=0.366 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 007907 417 IAASIAREKVAQIEKM 432 (585)
Q Consensus 417 I~eaVe~ER~gRLaKL 432 (585)
|.+++++||...+...
T Consensus 531 l~~kme~~~~~~~~e~ 546 (592)
T 1f5n_A 531 LTEKMENDRVQLLKEQ 546 (592)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555544333
No 3
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.71 E-value=10 Score=40.01 Aligned_cols=22 Identities=14% Similarity=0.052 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 007907 436 NLHINALCMAFYARSEEARKSY 457 (585)
Q Consensus 436 ~~~V~aLE~Al~~rse~lr~s~ 457 (585)
..+++.|+..+.+.-...|-+|
T Consensus 571 ~~~~~~l~~~~~~~~~~~~~~~ 592 (597)
T 3oja_B 571 RQKVKQLEAKKNRNPDTRRVSH 592 (597)
T ss_dssp HHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHhcCCCccccccc
Confidence 3334444444443333333333
No 4
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=82.35 E-value=68 Score=42.29 Aligned_cols=92 Identities=18% Similarity=0.143 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHhcCCC-----------cHHHHHHHHH---hhc
Q 007907 427 AQIEKMAEANLHINALCMAFYARSE-EARKSYFAHKLALGALALEDALSRGLP-----------IQKEIDTLYT---YLD 491 (585)
Q Consensus 427 gRLaKL~EL~~~V~aLE~Al~~rse-~lr~s~~tQqL~lAv~AL~saL~sg~P-----------L~~EL~aLke---~A~ 491 (585)
.--++|.++..+|..|+.-+....+ +.......+.|..-+.....+|.+..- -...+..|+. ..-
T Consensus 2025 ~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~ 2104 (3245)
T 3vkg_A 2025 ELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVV 2104 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhcc
Confidence 3344555566666666655554442 222223344444444444444443211 1112222221 122
Q ss_pred CCCCchHHHHHHhcCChhHhhcCCCCHH---HHHHHHHH
Q 007907 492 GIEKDSVLDLVLSSLPEETRYHGTETLL---QLNQKFDA 527 (585)
Q Consensus 492 g~~~D~LV~aaIsSLPeeA~qrGV~T~~---qL~~RF~k 527 (585)
| |-|+.|+. +.+-|.+|.. .|.+.|..
T Consensus 2105 G---D~LLaaaf------isY~G~f~~~~R~~l~~~W~~ 2134 (3245)
T 3vkg_A 2105 G---DVVLASAF------LAYIGFFDQNFRTDLMRKWMI 2134 (3245)
T ss_dssp H---HHHHHHHH------HHTGGGSCHHHHHHHHHHHHH
T ss_pred H---HHHHHHHH------HHHcCCCCHHHHHHHHHHHHH
Confidence 3 78887775 3456777754 45566653
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=81.06 E-value=49 Score=39.00 Aligned_cols=7 Identities=71% Similarity=0.738 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 007907 363 AILEKEL 369 (585)
Q Consensus 363 a~lreEL 369 (585)
+.+++++
T Consensus 994 ~~l~~~~ 1000 (1080)
T 2dfs_A 994 AKLRKEL 1000 (1080)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 6
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=74.46 E-value=55 Score=36.24 Aligned_cols=20 Identities=5% Similarity=0.071 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 007907 431 KMAEANLHINALCMAFYARS 450 (585)
Q Consensus 431 KL~EL~~~V~aLE~Al~~rs 450 (585)
-|+++..+|..||..++...
T Consensus 139 nLedq~~kIQRLEvDIdiqi 158 (562)
T 3ghg_A 139 NVRAQLVDMKRLEVDIDIKI 158 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46666777777777766533
No 7
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=68.93 E-value=43 Score=36.95 Aligned_cols=24 Identities=13% Similarity=-0.104 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 422 AREKVAQIEKMAEANLHINALCMA 445 (585)
Q Consensus 422 e~ER~gRLaKL~EL~~~V~aLE~A 445 (585)
+-=+.|.-.+...|...|+.|..-
T Consensus 559 ~~~~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 559 QLLKEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334556777888888888887765
No 8
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=66.44 E-value=92 Score=29.69 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 007907 328 LDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKA 376 (585)
Q Consensus 328 ~Da~~~~Eelk~L~ekfEkeLk~~ra~El~~aee~a~lreELEkErakl 376 (585)
.|.. .+.+++.+...-.+++++ ++.|.. ..-++|++.++.++
T Consensus 9 ~~~~-v~~~i~~m~~fI~qEA~e-KA~EI~-----~kAeeE~~~ek~~~ 50 (233)
T 4efa_E 9 TPNQ-VNDELNKMQAFIRKEAEE-KAKEIQ-----LKADQEYEIEKTNI 50 (233)
T ss_dssp CHHH-HHHHHHHHHHHHHHHHHH-HHHHHH-----HHHHHHHHHHHHHH
T ss_pred CHHH-HHHHHHHHHHHHHHHHHH-HHHHHH-----HHHHHHHHHHHHHH
Confidence 3444 567788888887778877 444331 22244666666665
No 9
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=64.42 E-value=77 Score=28.10 Aligned_cols=24 Identities=33% Similarity=0.268 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 007907 327 ELDGRAFAEEKRALKEKYEKELRD 350 (585)
Q Consensus 327 e~Da~~~~Eelk~L~ekfEkeLk~ 350 (585)
+..+....++++.|.+++++.-..
T Consensus 12 e~E~~~~~eel~~lke~l~k~e~~ 35 (129)
T 2fxo_A 12 EKEMASMKEEFTRLKEALEKSEAR 35 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677777777777665553
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.66 E-value=1.6e+02 Score=31.02 Aligned_cols=18 Identities=11% Similarity=-0.027 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007907 430 EKMAEANLHINALCMAFY 447 (585)
Q Consensus 430 aKL~EL~~~V~aLE~Al~ 447 (585)
++++.+..++..|+..+.
T Consensus 537 ~~~~~~~~~~~~le~~~~ 554 (597)
T 3oja_B 537 KETEDLEQENIALEKQLD 554 (597)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHhhhHHHHHHHh
Confidence 333444444444444443
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=61.71 E-value=4e+02 Score=35.46 Aligned_cols=28 Identities=7% Similarity=0.003 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 007907 423 REKVAQIEKMAEANLHINALCMAFYARS 450 (585)
Q Consensus 423 ~ER~gRLaKL~EL~~~V~aLE~Al~~rs 450 (585)
+|+..-..+++....+|..-++++.+.+
T Consensus 2056 ~ek~~L~~e~~~~~~kl~rA~~Li~gL~ 2083 (3245)
T 3vkg_A 2056 RETEQIKTESSKVKNKVDRSIALLDNLN 2083 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444444555556666666666655554
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=54.51 E-value=3.3e+02 Score=32.19 Aligned_cols=15 Identities=13% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q 007907 332 AFAEEKRALKEKYEK 346 (585)
Q Consensus 332 ~~~Eelk~L~ekfEk 346 (585)
-+...+..|+.+.+.
T Consensus 925 ~LE~kl~eLq~rL~~ 939 (1080)
T 2dfs_A 925 GLENKIMQLQRKIDE 939 (1080)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 355556666665554
No 13
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=51.36 E-value=1.3e+02 Score=26.52 Aligned_cols=79 Identities=15% Similarity=0.234 Sum_probs=44.5
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 322 EQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENE 401 (585)
Q Consensus 322 e~~Qae~Da~~~~Eelk~L~ekfEkeLk~~ra~El~~aee~a~lreELEkEraklAaalKalee~leeKLr~ELer~~eE 401 (585)
++-+.+++..-....+..++.+||.++..-..+ .+++..||+.+......- .--+.--+-|+.||.-++..
T Consensus 35 e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~----E~di~~lrK~lD~~~l~r-----~dLE~~iesL~eEl~FLKk~ 105 (119)
T 3ol1_A 35 DKARVEVERDNLAEDIMRLREKLQEEMLQREEA----ENTLQSFRQDVDNASLAR-----LDLERKVESLQEEIAFLKKL 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHhhhcccHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 344444555556788888899999888752222 345556666554433221 11111224566677777766
Q ss_pred HHHHHHHH
Q 007907 402 AESKLKNA 409 (585)
Q Consensus 402 ~eqkLkql 409 (585)
+++.++++
T Consensus 106 heeEl~eL 113 (119)
T 3ol1_A 106 HEEEIQEL 113 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 14
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=48.66 E-value=1.7e+02 Score=27.22 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007907 416 EIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYF 458 (585)
Q Consensus 416 EI~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~rse~lr~s~~ 458 (585)
.+..+++.-+..|-+.|++|..++..-+. +...+|+|+.
T Consensus 98 kL~~KME~~kEnReA~laal~erLkek~k----ha~eVrr~Ke 136 (143)
T 3ryc_E 98 KLAQKMESNKENREAHLAAMLERLQEKDK----HAEEVRKNKE 136 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHh
Confidence 47778888888999999999988886554 3455666654
No 15
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=45.37 E-value=1.8e+02 Score=27.38 Aligned_cols=39 Identities=36% Similarity=0.469 Sum_probs=20.2
Q ss_pred HhHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007907 311 VLDFLQAIHA-AEQRQAELDGRAFAEEKRALKEKYEKELR 349 (585)
Q Consensus 311 ~~d~~~aih~-ae~~Qae~Da~~~~Eelk~L~ekfEkeLk 349 (585)
+-|++..++. |.+.+..++.--+++++..+..+--..++
T Consensus 33 ~~~y~~~l~~~a~~~~eqL~~s~l~~el~~l~~e~~~~l~ 72 (191)
T 1nfn_A 33 FWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELK 72 (191)
T ss_dssp HHHHHHHHHHCCHHHHHHHTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 4555555554 44444444444555555555555444444
No 16
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=40.41 E-value=3.2e+02 Score=27.99 Aligned_cols=33 Identities=24% Similarity=0.231 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007907 417 IAASIAREKVAQIEKMAEANLHINALCMAFYAR 449 (585)
Q Consensus 417 I~eaVe~ER~gRLaKL~EL~~~V~aLE~Al~~r 449 (585)
+.+-++++....++++.|+...|..|+.-+...
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (471)
T 3mq9_A 430 LMASLDAEKAQGQKKVEELEGEITTLNHKLQDA 462 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555566666666666665554433
No 17
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=38.64 E-value=2.3e+02 Score=25.86 Aligned_cols=29 Identities=24% Similarity=0.125 Sum_probs=16.7
Q ss_pred HhcCChhHhhcCCCCHHHHHHHHHHHHhcc
Q 007907 503 LSSLPEETRYHGTETLLQLNQKFDALKGTL 532 (585)
Q Consensus 503 IsSLPeeA~qrGV~T~~qL~~RF~kV~~~v 532 (585)
+..|..-++++| .|.++|..++..+...+
T Consensus 131 L~~l~~L~RKyg-~~~eell~~~~~~~~eL 159 (175)
T 4abx_A 131 LSALSKLKNKYG-PTLEDVVEFGAQAAEEL 159 (175)
T ss_dssp HHHHHHHHHHHC-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHHH
Confidence 444445566666 46666666666555443
No 18
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=38.02 E-value=3.2e+02 Score=27.24 Aligned_cols=27 Identities=15% Similarity=0.080 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 402 AESKLKNALELAKAEIAASIAREKVAQ 428 (585)
Q Consensus 402 ~eqkLkqleE~aKaEI~eaVe~ER~gR 428 (585)
+..+...++++-+..+++++..||..+
T Consensus 176 v~~~~~~le~~~~~~~r~AL~EERrRy 202 (253)
T 2d1l_A 176 VNDKYLLLEETEKQAVRKALIEERGRF 202 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445677777777999999999876
No 19
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=38.00 E-value=3.5e+02 Score=27.72 Aligned_cols=16 Identities=6% Similarity=0.069 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 007907 335 EEKRALKEKYEKELRD 350 (585)
Q Consensus 335 Eelk~L~ekfEkeLk~ 350 (585)
+.++.+.++.++.|++
T Consensus 373 eal~~~~~~i~~~l~~ 388 (471)
T 3mq9_A 373 EALKDAQTRITAARDG 388 (471)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4445555555555544
No 20
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=37.37 E-value=51 Score=36.05 Aligned_cols=32 Identities=9% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 007907 421 IAREKVAQIEKMAEANLHINALCMAFYARSEE 452 (585)
Q Consensus 421 Ve~ER~gRLaKL~EL~~~V~aLE~Al~~rse~ 452 (585)
-+.||..--.++.++...+..|......+..+
T Consensus 403 ~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e 434 (575)
T 2i1j_A 403 EAAERQKLEDEIRAKQEEVSRIQQEVELKDSE 434 (575)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555567777777777777776666644
No 21
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.09 E-value=1.5e+02 Score=30.67 Aligned_cols=13 Identities=23% Similarity=0.371 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHH
Q 007907 414 KAEIAASIAREKV 426 (585)
Q Consensus 414 KaEI~eaVe~ER~ 426 (585)
++.+.+++.+|.+
T Consensus 469 ~~~~~~~~~~~~~ 481 (487)
T 3oja_A 469 NATLQELVVREQN 481 (487)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 4446666666543
No 22
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=36.72 E-value=1.8e+02 Score=24.04 Aligned_cols=34 Identities=15% Similarity=0.354 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 361 EAAILEKELKRERAKAAATIKSLQEKMEEKLRME 394 (585)
Q Consensus 361 e~a~lreELEkEraklAaalKalee~leeKLr~E 394 (585)
....|+.++.+-+...+..++.+++-+.-|++-+
T Consensus 34 ~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld 67 (84)
T 1gk4_A 34 TIGRLQDEIQNMKEEMARHLREYQDLLNVKMALD 67 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3455555555555555555555566555555543
No 23
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=36.14 E-value=2.2e+02 Score=27.56 Aligned_cols=174 Identities=12% Similarity=0.139 Sum_probs=0.0
Q ss_pred cccccCCCchHhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHH---
Q 007907 301 NGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEA-AILEKELKRERAKA--- 376 (585)
Q Consensus 301 ~~~~~~dgk~~~d~~~aih~ae~~Qae~Da~~~~Eelk~L~ekfEkeLk~~ra~El~~aee~-a~lreELEkErakl--- 376 (585)
+.++++...-+..+...++.-----++-=..-+......|+++..+.+.+.|..=.-|.+++ .+|.+.++.=+.++
T Consensus 43 ~~~~~d~~~~l~~~~~~l~~~l~p~~ee~~~~l~~~~~~lr~~l~kd~ee~r~~l~Py~~el~~~~~~~~eelr~~L~P~ 122 (243)
T 2a01_A 43 NLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPL 122 (243)
T ss_dssp CCSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCSSTTHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHH
Q 007907 377 AATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANL---------------HINA 441 (585)
Q Consensus 377 AaalKalee~leeKLr~ELer~~eE~eqkLkqleE~aKaEI~eaVe~ER~gRLaKL~EL~~---------------~V~a 441 (585)
...++..-..--+.++..|.-..++...++.+-.+-.+..+.--++.=|..--.++.++.. .+..
T Consensus 123 ~eel~~~~~~~~eel~~~L~p~~eelr~kl~~~veelk~~l~P~~ee~r~kl~~~~~el~~~l~p~~~e~~~kl~~~~e~ 202 (243)
T 2a01_A 123 RAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLST 202 (243)
T ss_dssp HHHHHHHHHHHHHHHCCSCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHh
Q 007907 442 LCMAFYARSEEARKSY--FAHKLALGALALEDALS 474 (585)
Q Consensus 442 LE~Al~~rse~lr~s~--~tQqL~lAv~AL~saL~ 474 (585)
|..-+....+.++... -+..+...+.++...+.
T Consensus 203 lr~~l~p~~e~lk~~l~p~~e~~~~~l~~~~e~~~ 237 (243)
T 2a01_A 203 LSEKAKPALEDLRQGLLPVLESFKVSFLSALEEYT 237 (243)
T ss_dssp HHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
No 24
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=33.50 E-value=4.1e+02 Score=27.28 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 421 IAREKVAQIEKMAEANLHINALCM 444 (585)
Q Consensus 421 Ve~ER~gRLaKL~EL~~~V~aLE~ 444 (585)
+.+|.+.-...|.++...+.....
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
T 3oja_A 447 LAEENARLKKLNGEADLALASANA 470 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhhhhhhHhccc
Confidence 333333333344555555444433
No 25
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=32.58 E-value=2.9e+02 Score=25.12 Aligned_cols=98 Identities=14% Similarity=0.118 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----------HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCCCC
Q 007907 426 VAQIEKMAEANLHINALCMAFYARSEEARKSY----------FAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEK 495 (585)
Q Consensus 426 ~gRLaKL~EL~~~V~aLE~Al~~rse~lr~s~----------~tQqL~lAv~AL~saL~sg~PL~~EL~aLke~A~g~~~ 495 (585)
..++.+|++|-.....=-..|..|.+..+... .++.|..+=++|.+.|... ..|+.+|..++..
T Consensus 4 ~~~le~id~L~leFAKrAa~fNnW~e~A~EdL~D~~~v~sleEI~~L~~~He~F~~~L~~a---~~e~~~i~~i~~e--- 77 (129)
T 1wlx_A 4 EKQLEAIDQLHLEYAKRAAPFNNWMESAMEDLQDMFIVHTIEEIEGLISAHDQFKSTLPDA---DREREAILAIHKE--- 77 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHhccchhhccHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHH---
Confidence 45677777777777777777888876665554 4788888888888887532 3455555444322
Q ss_pred chHHHHHHhcCCh---hHhhcCCCCHHHHHHHHHHHHhcc
Q 007907 496 DSVLDLVLSSLPE---ETRYHGTETLLQLNQKFDALKGTL 532 (585)
Q Consensus 496 D~LV~aaIsSLPe---eA~qrGV~T~~qL~~RF~kV~~~v 532 (585)
|+..+.+.+- ..--.-.+|.++|.++|+.|...+
T Consensus 78 ---l~~~~~~~~~~~~~~npYT~it~~~l~~~W~~l~~li 114 (129)
T 1wlx_A 78 ---AQRIAESNHIKLSGSNPYTTVTPQIINSKWEKVQQLV 114 (129)
T ss_dssp ---HHHHHHHSCCCCSSSCSSCCCCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHhCcCCCCCCCCccchHHHHHHHHHHHHHHH
Confidence 2222222220 000244567999999999987654
No 26
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=30.33 E-value=3.3e+02 Score=25.11 Aligned_cols=11 Identities=27% Similarity=0.685 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 007907 340 LKEKYEKELRD 350 (585)
Q Consensus 340 L~ekfEkeLk~ 350 (585)
|+....+.+.+
T Consensus 83 Lr~~l~kdlee 93 (185)
T 3r2p_A 83 LRQEMSKDLEE 93 (185)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhccHHH
Confidence 33333333433
No 27
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=28.73 E-value=4e+02 Score=25.63 Aligned_cols=46 Identities=22% Similarity=0.269 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 007907 331 RAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKA 376 (585)
Q Consensus 331 ~~~~Eelk~L~ekfEkeLk~~ra~El~~aee~a~lreELEkErakl 376 (585)
.-|.+..+.|..+.|++|..............++|+.|++.-+.|+
T Consensus 34 ~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~ 79 (189)
T 2v71_A 34 VEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKL 79 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888888888888888755555566666777777777777776
No 28
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=27.88 E-value=4e+02 Score=25.32 Aligned_cols=35 Identities=11% Similarity=0.095 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Q 007907 415 AEIAASIAREKVAQIE---KMAEANLHINALCMAFYAR 449 (585)
Q Consensus 415 aEI~eaVe~ER~gRLa---KL~EL~~~V~aLE~Al~~r 449 (585)
+.+...+++||..|.. -+.+|.++|.+|+.=+...
T Consensus 72 ~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~ 109 (168)
T 3o0z_A 72 YQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHL 109 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888866654 3457778888777655543
No 29
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=27.28 E-value=2.9e+02 Score=23.59 Aligned_cols=53 Identities=17% Similarity=0.249 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 334 AEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRM 393 (585)
Q Consensus 334 ~Eelk~L~ekfEkeLk~~ra~El~~aee~a~lreELEkEraklAaalKalee~leeKLr~ 393 (585)
...++.+...|..++.. +......|..+|..-+...+..+..+++-+.-|++.
T Consensus 25 E~~l~e~E~~~~~e~~~-------~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~L 77 (95)
T 3mov_A 25 LERIQELEDLLAKEKDN-------SRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLAL 77 (95)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554443 222233344444444444444444444444444433
No 30
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=25.51 E-value=3.7e+02 Score=24.21 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007907 330 GRAFAEEKRALKEKYEKELRD 350 (585)
Q Consensus 330 a~~~~Eelk~L~ekfEkeLk~ 350 (585)
-++|.+-...|+.++|+++.+
T Consensus 52 ~K~HE~kklqLkse~e~E~ae 72 (115)
T 3vem_A 52 KKTFEEKKSILKAELERKMAE 72 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444
No 31
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=25.10 E-value=3e+02 Score=22.90 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 334 AEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEKLRME 394 (585)
Q Consensus 334 ~Eelk~L~ekfEkeLk~~ra~El~~aee~a~lreELEkEraklAaalKalee~leeKLr~E 394 (585)
...+..+...|+.++.. +......++.++.+-+...+..++.+++-+.-|++.+
T Consensus 16 e~~l~e~E~~~~~~l~~-------~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le 69 (86)
T 1x8y_A 16 EAKLRDLEDSLARERDT-------SRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALD 69 (86)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34444455555555444 2223344455555555555555555555555554443
No 32
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} PDB: 4g0h_A
Probab=25.09 E-value=5.6e+02 Score=28.95 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=0.0
Q ss_pred CCCCCCCCCCC------CCCCCccchhhHHH
Q 007907 44 KPGPTGKPPES------GSNFSPIIFGATVV 68 (585)
Q Consensus 44 ~~~~~~~p~~s------~~~~~k~~~g~~~v 68 (585)
...-+|=||++ .++++||.||-.-.
T Consensus 249 tt~iqglppeardlld~rgnf~kftlgdmem 279 (876)
T 4dvy_P 249 TTDIQGLPPEARDLLDERGNFSKFTMGDMEM 279 (876)
T ss_dssp -------------------------------
T ss_pred ccCCCCCChhHHHHHhhcCCcccccccccee
Confidence 34567888876 57899999985433
No 33
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=24.33 E-value=4.8e+02 Score=25.10 Aligned_cols=22 Identities=5% Similarity=0.199 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhccccccccCCC
Q 007907 520 QLNQKFDALKGTLRHFSLIPPG 541 (585)
Q Consensus 520 qL~~RF~kV~~~vRraSLVPe~ 541 (585)
.|..+|.++......++.+|-.
T Consensus 176 ~lL~~Yerir~~~~g~avv~v~ 197 (256)
T 3na7_A 176 KIYSFYERIRRWAKNTSIVTIK 197 (256)
T ss_dssp HHHHHHHHHHHHHGGGSEEECB
T ss_pred HHHHHHHHHHHhCCCceEEEee
Confidence 3677888887766778888864
No 34
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.62 E-value=6.9e+02 Score=26.64 Aligned_cols=16 Identities=6% Similarity=0.200 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 007907 431 KMAEANLHINALCMAF 446 (585)
Q Consensus 431 KL~EL~~~V~aLE~Al 446 (585)
-|..+..+|..||..+
T Consensus 142 ~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 142 NVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566666777777665
No 35
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=22.91 E-value=3.5e+02 Score=22.98 Aligned_cols=38 Identities=11% Similarity=0.232 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 007907 423 REKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAH 460 (585)
Q Consensus 423 ~ER~gRLaKL~EL~~~V~aLE~Al~~rse~lr~s~~tQ 460 (585)
-||..+|..|.+-...|..--..|...+..+++.--++
T Consensus 54 LeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwk 91 (96)
T 1sfc_A 54 LERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWK 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888888888888887777666555444
No 36
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=22.30 E-value=5.7e+02 Score=25.16 Aligned_cols=28 Identities=7% Similarity=0.041 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 401 EAESKLKNALELAKAEIAASIAREKVAQ 428 (585)
Q Consensus 401 E~eqkLkqleE~aKaEI~eaVe~ER~gR 428 (585)
.+..+-..++++.+.-+++++-.||..+
T Consensus 170 ~v~~~~~~le~~~~~~lr~aL~EERrRy 197 (253)
T 2ykt_A 170 AISNKQGELENYVSDGYKTALTEERRRF 197 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445677777777999999999876
No 37
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=21.86 E-value=5.2e+02 Score=24.60 Aligned_cols=92 Identities=12% Similarity=0.065 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 333 FAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATI--KSLQEKMEEKLRMELEQKENEAESKLKNAL 410 (585)
Q Consensus 333 ~~Eelk~L~ekfEkeLk~~ra~El~~aee~a~lreELEkEraklAaal--Kalee~leeKLr~ELer~~eE~eqkLkqle 410 (585)
..+++..+...++..-..+. ...+++.+|..++.+...++...+ +-....+.++|+..+...+++.+.=-++..
T Consensus 77 ~ae~ll~l~~~Le~~r~~l~----~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~~L~~~L~~a~~e~eeeS~~l~~~F~ 152 (192)
T 2p22_C 77 QFKQLEENFEDLHEQKDKVQ----ALLENARILESKYVASWQDYHSEFSKKYGDIALKKKLEQNTKKLDEESSQLETTTR 152 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444444444222211 335566777777755544442222 122344566777666665544433222221
Q ss_pred HHH-HHHHHHHHHHHHHHH
Q 007907 411 ELA-KAEIAASIAREKVAQ 428 (585)
Q Consensus 411 E~a-KaEI~eaVe~ER~gR 428 (585)
.-+ ..++..-|.+=|..|
T Consensus 153 ~~~~e~dv~~Fl~~y~~~R 171 (192)
T 2p22_C 153 SIDSADDLDQFIKNYLDIR 171 (192)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred CCcccchHHHHHHHHHHHH
Confidence 100 345555555544443
No 38
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=21.64 E-value=8.3e+02 Score=26.83 Aligned_cols=25 Identities=8% Similarity=-0.013 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 423 REKVAQIEKMAEANLHINALCMAFY 447 (585)
Q Consensus 423 ~ER~gRLaKL~EL~~~V~aLE~Al~ 447 (585)
++.+..-.+|......+.++.+++.
T Consensus 80 ~~~AeY~~kl~aYe~~~~~~~k~la 104 (497)
T 3iox_A 80 KDLADYPVKLKAYEDEQTSIKAALA 104 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 39
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=20.10 E-value=5.2e+02 Score=23.86 Aligned_cols=39 Identities=36% Similarity=0.469 Sum_probs=22.3
Q ss_pred HhHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 007907 311 VLDFLQAIHA-AEQRQAELDGRAFAEEKRALKEKYEKELR 349 (585)
Q Consensus 311 ~~d~~~aih~-ae~~Qae~Da~~~~Eelk~L~ekfEkeLk 349 (585)
+.||+..+-. |......+|.--++++++.+...+=.++.
T Consensus 33 ~w~Y~~q~~~~a~~~v~ql~~sel~qel~~~l~~~ld~l~ 72 (165)
T 1gs9_A 33 FWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELK 72 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5667766653 36666666666666666664444333443
No 40
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=20.04 E-value=3.9e+02 Score=22.37 Aligned_cols=40 Identities=13% Similarity=0.261 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 007907 423 REKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKL 462 (585)
Q Consensus 423 ~ER~gRLaKL~EL~~~V~aLE~Al~~rse~lr~s~~tQqL 462 (585)
-||..+|..|.+-..+|..-...|...+..+++..-+++.
T Consensus 29 L~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~ 68 (91)
T 3hd7_A 29 LERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNL 68 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999888999998888888877744
Done!