Query 007907
Match_columns 585
No_of_seqs 98 out of 109
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 13:26:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007907.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007907hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cjja1 a.4.1.3 (A:8-70) Radia 22.4 31 0.0023 25.1 3.2 27 513-539 34-62 (63)
2 d1t3ua_ d.244.1.1 (A:) ZapA ho 18.7 1.8E+02 0.013 21.7 8.3 20 357-376 56-75 (92)
3 d1f5na1 a.114.1.1 (A:284-583) 11.6 4.1E+02 0.03 22.4 16.4 23 64-86 1-23 (300)
4 d2e74g1 f.23.26.1 (G:9-35) Pet 11.4 57 0.0041 20.9 1.8 15 63-77 3-19 (27)
5 d1f5na1 a.114.1.1 (A:284-583) 11.4 4.2E+02 0.03 22.4 14.8 13 297-309 137-149 (300)
6 d1ewfa2 d.83.1.1 (A:218-456) B 11.3 91 0.0066 27.4 4.0 56 30-86 8-64 (239)
7 d2dj7a1 g.39.1.3 (A:44-74) Act 9.7 31 0.0022 23.1 0.1 11 299-309 9-19 (31)
8 d2clyb1 f.53.1.1 (B:4-123) ATP 8.6 1.9E+02 0.014 23.7 4.7 31 320-350 87-117 (120)
9 d1ek8a_ d.67.3.1 (A:) Ribosome 8.6 3.1E+02 0.023 23.5 6.5 45 313-357 134-183 (185)
10 d1ykhb1 a.252.1.1 (B:2-130) RN 8.3 5E+02 0.036 21.1 8.7 73 359-442 51-124 (129)
No 1
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}
Probab=22.38 E-value=31 Score=25.08 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=21.3
Q ss_pred cCCCCHHHHHHHHHHHHhcccc--ccccC
Q 007907 513 HGTETLLQLNQKFDALKGTLRH--FSLIP 539 (585)
Q Consensus 513 rGV~T~~qL~~RF~kV~~~vRr--aSLVP 539 (585)
-+--|..|..+||..|...+++ .++||
T Consensus 34 l~gRt~~qc~~r~~~L~~dik~iesg~vp 62 (63)
T d2cjja1 34 VEGRTPEEVKKHYEILVEDIKYIESGKVP 62 (63)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred cCCCCHHHHHHHHHHHHHHhhccccCCCC
Confidence 3446999999999999888776 55665
No 2
>d1t3ua_ d.244.1.1 (A:) ZapA homologue PA5227 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=18.69 E-value=1.8e+02 Score=21.73 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 007907 357 MRTEEAAILEKELKRERAKA 376 (585)
Q Consensus 357 ~~aee~a~lreELEkErakl 376 (585)
+++.+.-.++.+++.....+
T Consensus 56 nla~e~~~~~~~~~~~~~~~ 75 (92)
T d1t3ua_ 56 NITHDLLHRKERLDQESSST 75 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433333
No 3
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.56 E-value=4.1e+02 Score=22.42 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHhchhhhhhh
Q 007907 64 GATVVVGVGLIAYQNGYLDQYID 86 (585)
Q Consensus 64 g~~~v~~~~~~ayq~g~ld~~~~ 86 (585)
||..|-|-.|+.|=--|+|-+-+
T Consensus 1 gg~~~~g~~l~~l~~~yv~ain~ 23 (300)
T d1f5na1 1 GGIQVNGPRLESLVLTYVNAISS 23 (300)
T ss_dssp TTEECBHHHHHHHHHHHHHHHHH
T ss_pred CCceeeHHHHHHHHHHHHHHHcC
Confidence 77778888877766556655444
No 4
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.41 E-value=57 Score=20.87 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=9.8
Q ss_pred hhhHH--HHHHHHHHHH
Q 007907 63 FGATV--VVGVGLIAYQ 77 (585)
Q Consensus 63 ~g~~~--v~~~~~~ayq 77 (585)
+|-++ ++|-+.||||
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 45444 3567789998
No 5
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.37 E-value=4.2e+02 Score=22.38 Aligned_cols=13 Identities=46% Similarity=0.657 Sum_probs=7.6
Q ss_pred hhhhcccccCCCc
Q 007907 297 EELNNGYLSKDGK 309 (585)
Q Consensus 297 e~~~~~~~~~dgk 309 (585)
+.+.+|..+.+|.
T Consensus 137 ~~~~~~~~~~~~~ 149 (300)
T d1f5na1 137 EEVKAGIYSKPGG 149 (300)
T ss_dssp HHHHTTTTSSTTH
T ss_pred HHHHhhhhcCCch
Confidence 3456666666663
No 6
>d1ewfa2 d.83.1.1 (A:218-456) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.33 E-value=91 Score=27.43 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=37.3
Q ss_pred cccccccccCCCCCC-CCCCCCCCCCCCCCCccchhhHHHHHHHHHHHHhchhhhhhh
Q 007907 30 RKEYSTASQKNVSPK-PGPTGKPPESGSNFSPIIFGATVVVGVGLIAYQNGYLDQYID 86 (585)
Q Consensus 30 ~~~~~~~~~~~~~~~-~~~~~~p~~s~~~~~k~~~g~~~v~~~~~~ayq~g~ld~~~~ 86 (585)
+-+|......+..|- +.|-.-|+ ..+.+--+.+.--+.=-++.++|++|+||-.|.
T Consensus 8 kG~f~~~~~~~~~pf~~~~~~~p~-~~~~M~~~~isey~~nS~~~~~~~ag~l~~~it 64 (239)
T d1ewfa2 8 KGEFYSENHHNPPPFAPPVMEFPA-AHDRMVYLGLSDYFFNTAGLVYQEAGVLKMTLR 64 (239)
T ss_dssp CCEEECSSCCCCCSSCCCCCCCCC-CCSSSEEEEEEHHHHHHHHHHHHHTTCSEEEEE
T ss_pred eEEEEeCCCCCCCCCCCCCcCCCC-CCCcEEEEEEcHHHHHHHHHHHHHCCCeEEEEC
Confidence 444555555555553 33334443 455677777888888888899999999996554
No 7
>d2dj7a1 g.39.1.3 (A:44-74) Actin-binding LIM protein 3, abLIM-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.74 E-value=31 Score=23.11 Aligned_cols=11 Identities=55% Similarity=0.899 Sum_probs=9.3
Q ss_pred hhcccccCCCc
Q 007907 299 LNNGYLSKDGK 309 (585)
Q Consensus 299 ~~~~~~~~dgk 309 (585)
|++.||++||+
T Consensus 9 L~gEYm~kdG~ 19 (31)
T d2dj7a1 9 LTGEYISKDGV 19 (31)
T ss_dssp CSSCCEEETTE
T ss_pred ccceeecCCCC
Confidence 67889999995
No 8
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.59 E-value=1.9e+02 Score=23.73 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=26.1
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007907 320 AAEQRQAELDGRAFAEEKRALKEKYEKELRD 350 (585)
Q Consensus 320 ~ae~~Qae~Da~~~~Eelk~L~ekfEkeLk~ 350 (585)
.|+..++..++..|-++.+....+|+++|..
T Consensus 87 da~e~e~~~~~~~~~~~s~~rI~~lekeLe~ 117 (120)
T d2clyb1 87 DAEEKEDVKSCAEFLTQSKTRIQEYEKELEK 117 (120)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888999999999999999988875
No 9
>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia coli [TaxId: 562]}
Probab=8.55 E-value=3.1e+02 Score=23.51 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHhh
Q 007907 313 DFLQAIHAAEQRQ--AELDGRAFAEEKRALKEKYEKELRD---SRARELM 357 (585)
Q Consensus 313 d~~~aih~ae~~Q--ae~Da~~~~Eelk~L~ekfEkeLk~---~ra~El~ 357 (585)
|...-|+..++.- .|-|.+.+.++++++.++|-+++.+ .+..|++
T Consensus 134 ~~~~~ik~~~k~~~iseD~~k~~~~~iq~ltd~~~~~id~~~~~Kekeil 183 (185)
T d1ek8a_ 134 DANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEAELM 183 (185)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 10
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.26 E-value=5e+02 Score=21.08 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007907 359 TEEAAILEKELKRERAKAAATIKSLQEKM-EEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANL 437 (585)
Q Consensus 359 aee~a~lreELEkEraklAaalKalee~l-eeKLr~ELer~~eE~eqkLkqleE~aKaEI~eaVe~ER~gRLaKL~EL~~ 437 (585)
.+.|...-+||.+-...-+..+..+=..| ..-.-.+.+... |++|++.+.. +++||..-+.+.+++..
T Consensus 51 ~e~f~~~~~elA~dii~kakqId~LI~sLP~~~~see~Q~~~------i~~Le~E~~~-----~~~el~~~v~e~e~ll~ 119 (129)
T d1ykhb1 51 PEEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRK------IDMLQKKLVE-----VEDEKIEAIKKKEKLMR 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHH------HHHHHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCCHHHHHHH------HHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 007907 438 HINAL 442 (585)
Q Consensus 438 ~V~aL 442 (585)
+|.++
T Consensus 120 ~i~~~ 124 (129)
T d1ykhb1 120 HVDSM 124 (129)
T ss_dssp HHHHH
T ss_pred HHHHH
Done!