Query 007908
Match_columns 585
No_of_seqs 164 out of 438
Neff 3.3
Searched_HMMs 46136
Date Thu Mar 28 16:56:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007908.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007908hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00249 Myb_DNA-binding: Myb- 99.0 1.2E-10 2.7E-15 88.4 3.3 47 468-518 1-48 (48)
2 PLN03212 Transcription repress 99.0 1E-09 2.3E-14 110.2 7.1 63 462-528 19-82 (249)
3 smart00717 SANT SANT SWI3, AD 98.8 1E-08 2.3E-13 74.1 5.1 48 468-519 1-48 (49)
4 PLN03091 hypothetical protein; 98.8 6.9E-09 1.5E-13 111.2 5.8 64 463-529 9-72 (459)
5 PF13921 Myb_DNA-bind_6: Myb-l 98.8 1.1E-08 2.3E-13 80.2 5.0 53 471-528 1-53 (60)
6 KOG0048 Transcription factor, 98.7 2.2E-08 4.9E-13 98.7 5.3 57 468-528 9-66 (238)
7 cd00167 SANT 'SWI3, ADA2, N-Co 98.6 3.9E-08 8.5E-13 70.3 4.7 45 470-518 1-45 (45)
8 PLN03212 Transcription repress 98.0 5.6E-06 1.2E-10 83.8 4.7 52 467-523 77-128 (249)
9 PLN03091 hypothetical protein; 97.9 1.3E-05 2.7E-10 86.7 5.0 50 467-521 66-115 (459)
10 TIGR01557 myb_SHAQKYF myb-like 97.4 0.00036 7.9E-09 56.5 5.7 48 466-516 1-52 (57)
11 KOG0457 Histone acetyltransfer 97.3 0.00032 7E-09 75.8 5.6 68 469-548 73-141 (438)
12 KOG0049 Transcription factor, 97.3 0.00024 5.1E-09 80.0 4.5 59 466-528 358-416 (939)
13 KOG0048 Transcription factor, 97.1 0.00061 1.3E-08 67.7 4.6 53 466-523 60-112 (238)
14 PF13837 Myb_DNA-bind_4: Myb/S 97.0 0.00068 1.5E-08 56.3 3.3 53 468-520 1-66 (90)
15 KOG0051 RNA polymerase I termi 96.8 0.0011 2.4E-08 74.4 4.2 56 467-528 383-440 (607)
16 KOG0049 Transcription factor, 96.3 0.0023 5E-08 72.4 2.5 52 464-519 408-459 (939)
17 PF13873 Myb_DNA-bind_5: Myb/S 95.7 0.012 2.7E-07 48.3 3.7 53 468-520 2-71 (78)
18 COG5114 Histone acetyltransfer 95.0 0.035 7.5E-07 59.1 5.1 71 469-551 64-136 (432)
19 PF09111 SLIDE: SLIDE; InterP 94.0 0.042 9.2E-07 50.5 2.9 54 467-520 48-112 (118)
20 PF13325 MCRS_N: N-terminal re 93.5 0.06 1.3E-06 53.7 3.2 58 467-524 72-132 (199)
21 KOG1279 Chromatin remodeling f 93.2 0.096 2.1E-06 58.4 4.5 48 466-518 251-298 (506)
22 COG5147 REB1 Myb superfamily p 93.1 0.088 1.9E-06 58.7 4.1 60 465-528 17-76 (512)
23 KOG0050 mRNA splicing protein 93.1 0.041 8.8E-07 61.4 1.4 58 468-529 7-64 (617)
24 COG5259 RSC8 RSC chromatin rem 91.5 0.16 3.6E-06 56.2 3.6 47 467-518 278-324 (531)
25 COG5147 REB1 Myb superfamily p 90.6 0.14 3.1E-06 57.2 2.1 49 468-522 291-339 (512)
26 KOG4282 Transcription factor G 90.3 0.5 1.1E-05 49.2 5.7 81 468-555 54-143 (345)
27 PLN03142 Probable chromatin-re 87.8 0.62 1.4E-05 56.0 4.8 54 467-520 925-986 (1033)
28 PF11149 DUF2924: Protein of u 84.2 0.89 1.9E-05 43.2 3.0 39 175-213 7-45 (136)
29 KOG0051 RNA polymerase I termi 83.7 1.1 2.4E-05 51.2 4.0 59 466-528 434-518 (607)
30 PF08914 Myb_DNA-bind_2: Rap1 82.8 1.9 4E-05 36.1 4.0 51 468-521 2-60 (65)
31 KOG2656 DNA methyltransferase 71.5 3.1 6.7E-05 45.7 2.8 54 469-523 131-190 (445)
32 PF12776 Myb_DNA-bind_3: Myb/S 71.2 7 0.00015 32.9 4.4 50 470-519 1-63 (96)
33 PF08074 CHDCT2: CHDCT2 (NUC03 70.3 2.8 6.1E-05 41.4 2.0 48 467-514 2-58 (173)
34 COG5118 BDP1 Transcription ini 67.0 7.6 0.00016 42.8 4.6 52 464-520 361-412 (507)
35 KOG0384 Chromodomain-helicase 63.5 4.8 0.0001 49.5 2.6 53 467-519 1132-1192(1373)
36 PF04504 DUF573: Protein of un 60.3 18 0.00038 32.3 4.9 54 467-520 3-64 (98)
37 KOG0050 mRNA splicing protein 43.0 20 0.00043 41.0 3.0 48 467-520 58-105 (617)
38 PF09420 Nop16: Ribosome bioge 38.7 58 0.0013 31.2 5.0 52 466-518 112-163 (164)
39 PRK13923 putative spore coat p 27.2 39 0.00084 33.6 1.8 51 467-519 4-57 (170)
40 TIGR02894 DNA_bind_RsfA transc 23.3 54 0.0012 32.4 2.0 54 468-523 4-60 (161)
41 PLN03162 golden-2 like transcr 22.5 2.7E+02 0.0058 31.4 7.2 55 464-520 233-292 (526)
42 KOG4468 Polycomb-group transcr 22.3 1.8E+02 0.0039 34.4 6.0 27 467-494 87-113 (782)
43 cd01187 INT_SG4 INT_SG4, DNA b 20.7 1.9E+02 0.0042 28.4 5.3 82 467-553 98-186 (299)
No 1
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.04 E-value=1.2e-10 Score=88.44 Aligned_cols=47 Identities=36% Similarity=0.653 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCC-CCChhhHHHHHHHhh
Q 007908 468 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYS-YRTSVDLKDKWRNLL 518 (585)
Q Consensus 468 rr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~-~RT~VDLKDKWRNLl 518 (585)
|++||++|++.|+++|.+||.++|..|+.. ++ +||..+|+++|++++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~----~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKR----MPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHH----HSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHH----cCCCCCHHHHHHHHHhhC
Confidence 578999999999999999999889999853 44 999999999999975
No 2
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.96 E-value=1e-09 Score=110.22 Aligned_cols=63 Identities=24% Similarity=0.382 Sum_probs=56.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccC-CCCChhhHHHHHHHhhcccCCCCCCC
Q 007908 462 GVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASY-SYRTSVDLKDKWRNLLKASLAQTPPD 528 (585)
Q Consensus 462 gkrRKkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f-~~RT~VDLKDKWRNLlK~s~~q~p~~ 528 (585)
-|.--++++||+||++.|++.|++||.++|..|+.. + .+||+.+|++||.|.+++.+.++||-
T Consensus 19 ~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~----~g~gRT~KQCReRW~N~L~P~I~kgpWT 82 (249)
T PLN03212 19 TKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKR----AGLLRCGKSCRLRWMNYLRPSVKRGGIT 82 (249)
T ss_pred ccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHh----hhcCCCcchHHHHHHHhhchhcccCCCC
Confidence 345556889999999999999999999999999742 3 58999999999999999999999995
No 3
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.77 E-value=1e-08 Score=74.08 Aligned_cols=48 Identities=38% Similarity=0.694 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhc
Q 007908 468 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 519 (585)
Q Consensus 468 rr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK 519 (585)
+.+||++|++.|+.+|.+||.++|..|.. .+++||..+|+++|+++++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~----~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAK----ELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHH----HcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999779999984 3569999999999999875
No 4
>PLN03091 hypothetical protein; Provisional
Probab=98.77 E-value=6.9e-09 Score=111.15 Aligned_cols=64 Identities=23% Similarity=0.451 Sum_probs=56.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccCCCCCCCc
Q 007908 463 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDS 529 (585)
Q Consensus 463 krRKkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~~ 529 (585)
|++.++++||+|||+.|++.|++||.++|..|++. .-.+||+.+|++||.|.+.+.+.++||-+
T Consensus 9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~---~g~gRT~KQCRERW~NyLdP~IkKgpWT~ 72 (459)
T PLN03091 9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQ---AGLQRCGKSCRLRWINYLRPDLKRGTFSQ 72 (459)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhh---hccCcCcchHhHHHHhccCCcccCCCCCH
Confidence 45566789999999999999999999999999842 12589999999999999999999999963
No 5
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.76 E-value=1.1e-08 Score=80.24 Aligned_cols=53 Identities=34% Similarity=0.648 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccCCCCCCC
Q 007908 471 WTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 528 (585)
Q Consensus 471 WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 528 (585)
||.+|++.|+.+|.+||. +|+.|.. .|++||..+|++||++.+++....+||.
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~----~l~~Rt~~~~~~r~~~~l~~~~~~~~wt 53 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAE----HLGNRTPKQCRNRWRNHLRPKISRGPWT 53 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHH----HSTTS-HHHHHHHHHHTTSTTSTSSSSS
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHH----HHCcCCHHHHHHHHHHHCcccccCCCcC
Confidence 999999999999999996 9999984 3567999999999999887777777775
No 6
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.67 E-value=2.2e-08 Score=98.71 Aligned_cols=57 Identities=18% Similarity=0.386 Sum_probs=52.6
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCC-CCChhhHHHHHHHhhcccCCCCCCC
Q 007908 468 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYS-YRTSVDLKDKWRNLLKASLAQTPPD 528 (585)
Q Consensus 468 rr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~-~RT~VDLKDKWRNLlK~s~~q~p~~ 528 (585)
+++||+|||+.|++-|++||.|+|..|.+. +. .|++.+|+-||.|.+++.+.+++|-
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~----~gl~R~GKSCRlRW~NyLrP~ikrg~fT 66 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKL----AGLRRCGKSCRLRWTNYLRPDLKRGNFS 66 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhh----cCCCccchHHHHHhhcccCCCccCCCCC
Confidence 699999999999999999999999999854 33 9999999999999999999988875
No 7
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.65 E-value=3.9e-08 Score=70.31 Aligned_cols=45 Identities=40% Similarity=0.777 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhh
Q 007908 470 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 518 (585)
Q Consensus 470 ~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLl 518 (585)
+||.+|+..|+.++++||.++|..|.. .++.||..+|+++|.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~----~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAK----ELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHh----HcCCCCHHHHHHHHHHhC
Confidence 599999999999999999889999984 356799999999999874
No 8
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.00 E-value=5.6e-06 Score=83.81 Aligned_cols=52 Identities=25% Similarity=0.335 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccCC
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLA 523 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~~ 523 (585)
.+.+||.||++.|++.+.+||. +|+.|.. .|++||..++|.||.++++..+.
T Consensus 77 ~kgpWT~EED~lLlel~~~~Gn-KWs~IAk----~LpGRTDnqIKNRWns~LrK~l~ 128 (249)
T PLN03212 77 KRGGITSDEEDLILRLHRLLGN-RWSLIAG----RIPGRTDNEIKNYWNTHLRKKLL 128 (249)
T ss_pred ccCCCChHHHHHHHHHHHhccc-cHHHHHh----hcCCCCHHHHHHHHHHHHhHHHH
Confidence 4679999999999999999997 9999983 47899999999999998886544
No 9
>PLN03091 hypothetical protein; Provisional
Probab=97.88 E-value=1.3e-05 Score=86.71 Aligned_cols=50 Identities=26% Similarity=0.456 Sum_probs=44.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 521 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s 521 (585)
++++||.||++.|++.+++||. +|+.|.. .|++||..+||.||..+++..
T Consensus 66 kKgpWT~EED~lLLeL~k~~Gn-KWskIAk----~LPGRTDnqIKNRWnslLKKk 115 (459)
T PLN03091 66 KRGTFSQQEENLIIELHAVLGN-RWSQIAA----QLPGRTDNEIKNLWNSCLKKK 115 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhCc-chHHHHH----hcCCCCHHHHHHHHHHHHHHH
Confidence 3679999999999999999998 9999983 478999999999999988754
No 10
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.40 E-value=0.00036 Score=56.49 Aligned_cols=48 Identities=21% Similarity=0.327 Sum_probs=38.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCc---hhhhhhhcccCCCC-ChhhHHHHHHH
Q 007908 466 KHHRAWTLSEVMKLVEGVSKYGAGRW---SEIKRLAFASYSYR-TSVDLKDKWRN 516 (585)
Q Consensus 466 Kkrr~WT~EEveaLv~GVeKyG~G~W---~~Ik~~~f~~f~~R-T~VDLKDKWRN 516 (585)
|+|..||+||...+++||+.||.|+| +.|+... ...| |..+++.....
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~---~~~~lT~~qV~SH~QK 52 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELM---VVDGLTRDQVASHLQK 52 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHc---CCCCCCHHHHHHHHHH
Confidence 46889999999999999999999999 8887421 1245 99998866543
No 11
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.29 E-value=0.00032 Score=75.77 Aligned_cols=68 Identities=21% Similarity=0.369 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhc-ccCCCCCCCcccccccCCCCCCCChHHH
Q 007908 469 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK-ASLAQTPPDSRMGARKHASSVPIPMPVL 547 (585)
Q Consensus 469 r~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK-~s~~q~p~~~g~~~Rk~~~~~piP~~iL 547 (585)
--||.+|+-.|++|++.||.|||.+|++. ...||.-+||+.|.++.- ..+.+-||-. -.+++|+..+
T Consensus 73 ~~WtadEEilLLea~~t~G~GNW~dIA~h----IGtKtkeeck~hy~k~fv~s~~~~~~~i~--------~~~~~~q~e~ 140 (438)
T KOG0457|consen 73 PSWTADEEILLLEAAETYGFGNWQDIADH----IGTKTKEECKEHYLKHFVNSPIFPLPDIS--------LGIGVNQDED 140 (438)
T ss_pred CCCChHHHHHHHHHHHHhCCCcHHHHHHH----HcccchHHHHHHHHHHHhcCccccccccc--------cccCcchHHH
Confidence 46999999999999999999999999853 458999999999998875 4444445421 2455666554
Q ss_pred H
Q 007908 548 L 548 (585)
Q Consensus 548 ~ 548 (585)
+
T Consensus 141 ~ 141 (438)
T KOG0457|consen 141 A 141 (438)
T ss_pred h
Confidence 4
No 12
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=97.28 E-value=0.00024 Score=80.00 Aligned_cols=59 Identities=27% Similarity=0.487 Sum_probs=53.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccCCCCCCC
Q 007908 466 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 528 (585)
Q Consensus 466 Kkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 528 (585)
-++.+||++|+..|+.+|++||...|.+|. ..|++|+-.||++||.|.+..+...+-|.
T Consensus 358 ikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R----~~vPnRSdsQcR~RY~nvL~~s~K~~rW~ 416 (939)
T KOG0049|consen 358 VKHGRWTDQEDVLLVCAVSRYGAKDWAKVR----QAVPNRSDSQCRERYTNVLNRSAKVERWT 416 (939)
T ss_pred ccCCCCCCHHHHHHHHHHHHhCccchhhHH----HhcCCccHHHHHHHHHHHHHHhhccCcee
Confidence 358899999999999999999999999998 45789999999999999999888777775
No 13
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=97.06 E-value=0.00061 Score=67.66 Aligned_cols=53 Identities=25% Similarity=0.373 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccCC
Q 007908 466 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLA 523 (585)
Q Consensus 466 Kkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~~ 523 (585)
-+++.||+||++.|+++-.+||. +|+.|+ ..|++||.-.+|--|...+|..+.
T Consensus 60 ikrg~fT~eEe~~Ii~lH~~~GN-rWs~IA----~~LPGRTDNeIKN~Wnt~lkkkl~ 112 (238)
T KOG0048|consen 60 LKRGNFSDEEEDLIIKLHALLGN-RWSLIA----GRLPGRTDNEVKNHWNTHLKKKLL 112 (238)
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-HHHHHH----hhCCCcCHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999 899998 458999999999999888765443
No 14
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=96.96 E-value=0.00068 Score=56.25 Aligned_cols=53 Identities=30% Similarity=0.460 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHHHh------hCC-----C--CchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 007908 468 HRAWTLSEVMKLVEGVSK------YGA-----G--RWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 520 (585)
Q Consensus 468 rr~WT~EEveaLv~GVeK------yG~-----G--~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~ 520 (585)
|..||.+|+..|++.+.. |+. + .|..|...-...=-.||+.+|++||.||.+.
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~ 66 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKK 66 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 568999999999999887 221 1 5999985321111279999999999999974
No 15
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=96.79 E-value=0.0011 Score=74.39 Aligned_cols=56 Identities=27% Similarity=0.452 Sum_probs=48.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccC--CCCCCC
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASL--AQTPPD 528 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~--~q~p~~ 528 (585)
.++.||++|++.|...|..+|. .|+.|.+ .-+|.+.+|+|+||+.++.+- ..++|-
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~-----~lgr~P~~crd~wr~~~~~g~~~~r~~Ws 440 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGK-----ALGRMPMDCRDRWRQYVKCGSKRNRGAWS 440 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcc-cHHHHHH-----HHccCcHHHHHHHHHhhccccccccCcch
Confidence 5788999999999999999998 9999974 358999999999999999875 446663
No 16
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.27 E-value=0.0023 Score=72.38 Aligned_cols=52 Identities=29% Similarity=0.498 Sum_probs=43.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhc
Q 007908 464 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 519 (585)
Q Consensus 464 rRKkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK 519 (585)
++-+...||..|++.|+..|++||.|+|.+|+ ..+++||..++..+-+.++.
T Consensus 408 ~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA----~~Lp~~t~~q~~rrR~R~~~ 459 (939)
T KOG0049|consen 408 RSAKVERWTLVEDEQLLYAVKVYGKGNWAKCA----MLLPKKTSRQLRRRRLRLIA 459 (939)
T ss_pred HhhccCceeecchHHHHHHHHHHccchHHHHH----HHccccchhHHHHHHHHHHH
Confidence 44567889999999999999999999999998 34789999888776655553
No 17
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=95.66 E-value=0.012 Score=48.34 Aligned_cols=53 Identities=32% Similarity=0.341 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHhh-----CC-----------CCchhhhhhhcccC-CCCChhhHHHHHHHhhcc
Q 007908 468 HRAWTLSEVMKLVEGVSKY-----GA-----------GRWSEIKRLAFASY-SYRTSVDLKDKWRNLLKA 520 (585)
Q Consensus 468 rr~WT~EEveaLv~GVeKy-----G~-----------G~W~~Ik~~~f~~f-~~RT~VDLKDKWRNLlK~ 520 (585)
...||.+|.+.|++.|++| |. ..|..|........ ..||..+||.+|.||...
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~ 71 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK 71 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999998 31 36999986433322 489999999999999754
No 18
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=94.95 E-value=0.035 Score=59.07 Aligned_cols=71 Identities=20% Similarity=0.447 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhc-ccCCCCCCCcccccccCCCCCCCChH-H
Q 007908 469 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK-ASLAQTPPDSRMGARKHASSVPIPMP-V 546 (585)
Q Consensus 469 r~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK-~s~~q~p~~~g~~~Rk~~~~~piP~~-i 546 (585)
--|+..|+-.|+++.+..|.|+|.+|++. ...|+..++|+.|-.+.- ...++-|.. . -..++|++ +
T Consensus 64 e~WgadEEllli~~~~TlGlGNW~dIady----iGsr~kee~k~HylK~y~es~~ypl~~i------~--~~~~v~q~~f 131 (432)
T COG5114 64 EGWGADEELLLIECLDTLGLGNWEDIADY----IGSRAKEEIKSHYLKMYDESKYYPLPDI------T--QNIHVPQDEF 131 (432)
T ss_pred CCcCchHHHHHHHHHHhcCCCcHHHHHHH----HhhhhhHHHHHHHHHHHhhccccccccc------c--cCCCCchHHH
Confidence 35999999999999999999999999842 458999999999988776 333433322 1 24567774 4
Q ss_pred HHHHH
Q 007908 547 LLRVR 551 (585)
Q Consensus 547 L~RVr 551 (585)
|.+-|
T Consensus 132 ~~qrr 136 (432)
T COG5114 132 LEQRR 136 (432)
T ss_pred HHHHH
Confidence 44433
No 19
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=94.00 E-value=0.042 Score=50.49 Aligned_cols=54 Identities=28% Similarity=0.473 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhCC---CCchhhhhh-----h--ccc-CCCCChhhHHHHHHHhhcc
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGA---GRWSEIKRL-----A--FAS-YSYRTSVDLKDKWRNLLKA 520 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~---G~W~~Ik~~-----~--f~~-f~~RT~VDLKDKWRNLlK~ 520 (585)
..+.||.+||..|+.-+.+||. |.|..|+.. . |+- |..||+.+|..|-..|++.
T Consensus 48 ~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~ 112 (118)
T PF09111_consen 48 KKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL 112 (118)
T ss_dssp S-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999 999999863 1 221 3699999999999998874
No 20
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=93.54 E-value=0.06 Score=53.70 Aligned_cols=58 Identities=19% Similarity=0.215 Sum_probs=49.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhC--CCCchhhhhhhcccC-CCCChhhHHHHHHHhhcccCCC
Q 007908 467 HHRAWTLSEVMKLVEGVSKYG--AGRWSEIKRLAFASY-SYRTSVDLKDKWRNLLKASLAQ 524 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG--~G~W~~Ik~~~f~~f-~~RT~VDLKDKWRNLlK~s~~q 524 (585)
.+-+||.+|++.|..+..... ...+.+|+..+...| ..||+.+|.+.|+.|.++...+
T Consensus 72 ~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~ 132 (199)
T PF13325_consen 72 SKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLP 132 (199)
T ss_pred ccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhh
Confidence 578999999999999877764 468999998777777 6799999999999988776664
No 21
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=93.24 E-value=0.096 Score=58.40 Aligned_cols=48 Identities=21% Similarity=0.425 Sum_probs=42.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhh
Q 007908 466 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 518 (585)
Q Consensus 466 Kkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLl 518 (585)
..+..||..|.-.|++||++||. .|.+|.. ....||.-||-.|+..|=
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~----hVg~ks~eqCI~kFL~LP 298 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEMYGD-DWNKVAD----HVGTKSQEQCILKFLRLP 298 (506)
T ss_pred cCCCCccHHHHHHHHHHHHHhcc-cHHHHHh----ccCCCCHHHHHHHHHhcC
Confidence 35678999999999999999999 9999983 356999999999998764
No 22
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=93.15 E-value=0.088 Score=58.74 Aligned_cols=60 Identities=22% Similarity=0.399 Sum_probs=51.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccCCCCCCC
Q 007908 465 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 528 (585)
Q Consensus 465 RKkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 528 (585)
.+....|+..||+.|.-+|++||.-+|+.|. ..|..||+.|++-+|-|.+.+.+.+..|.
T Consensus 17 ~~k~gsw~~~EDe~l~~~vk~l~~nnws~va----s~~~~~~~kq~~~rw~~~lnp~lk~~~~~ 76 (512)
T COG5147 17 KRKGGSWKRTEDEDLKALVKKLGPNNWSKVA----SLLISSTGKQSSNRWNNHLNPQLKKKNWS 76 (512)
T ss_pred eecCCCCCCcchhHHHHHHhhcccccHHHHH----HHhcccccccccchhhhhhchhccccccc
Confidence 4456699999999999999999999999998 44667999999999999888877766664
No 23
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=93.09 E-value=0.041 Score=61.39 Aligned_cols=58 Identities=26% Similarity=0.458 Sum_probs=52.1
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccCCCCCCCc
Q 007908 468 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDS 529 (585)
Q Consensus 468 rr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~~ 529 (585)
-.-|+--|++.|..+|.+||...|+.|.. .++..|..+|+-+|-..+.+++...-|.+
T Consensus 7 ggvwrntEdeilkaav~kyg~nqws~i~s----ll~~kt~rqC~~rw~e~ldp~i~~tews~ 64 (617)
T KOG0050|consen 7 GGVWRNTEDEVLKAAVMKYGKNQWSRIAS----LLNRKTARQCKARWEEWLDPAIKKTEWSR 64 (617)
T ss_pred cceecccHHHHHHHHHHHcchHHHHHHHH----HHhhcchhHHHHHHHHHhCHHHhhhhhhh
Confidence 45799999999999999999999999983 46789999999999999999998888864
No 24
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=91.49 E-value=0.16 Score=56.18 Aligned_cols=47 Identities=23% Similarity=0.543 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhh
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 518 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLl 518 (585)
.-.+||.+|.-.|++||+.||. .|.+|++ ...++|--||--|+-+|=
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~----HVgtKt~EqCIl~FL~LP 324 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGD-DWDKVAR----HVGTKTKEQCILHFLQLP 324 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhh-hHHHHHH----HhCCCCHHHHHHHHHcCC
Confidence 3568999999999999999999 9999984 357999999999987764
No 25
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=90.61 E-value=0.14 Score=57.17 Aligned_cols=49 Identities=31% Similarity=0.562 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccC
Q 007908 468 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASL 522 (585)
Q Consensus 468 rr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~ 522 (585)
+..||.+|+..|..-+.++|. .|+.|.. ..+|-+.+|+|+||+.++.+.
T Consensus 291 ~~~wt~e~~~eL~~~~~~~~~-~w~~ig~-----~~~rmp~~crd~wr~~~~~g~ 339 (512)
T COG5147 291 RGKWTKEEEQELAKLVVEHGG-SWTEIGK-----LLGRMPNDCRDRWRDYVKCGD 339 (512)
T ss_pred hccCccccccccccccccccc-hhhHhhh-----hhccCcHHHHHHHhhhccccC
Confidence 567999999999999999998 9999974 348999999999999999863
No 26
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=90.33 E-value=0.5 Score=49.15 Aligned_cols=81 Identities=21% Similarity=0.242 Sum_probs=53.4
Q ss_pred CCCCCHHHHHHHHHHHHhh----CCCC-----chhhhhhhcccCCCCChhhHHHHHHHhhcccCCCCCCCcccccccCCC
Q 007908 468 HRAWTLSEVMKLVEGVSKY----GAGR-----WSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHAS 538 (585)
Q Consensus 468 rr~WT~EEveaLv~GVeKy----G~G~-----W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~~g~~~Rk~~~ 538 (585)
...|+.+|+.+||+...+. ..|+ |..|.......=-.||+.+||.||.||.+..-. ... ++..+
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~--~k~-----~~~~~ 126 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKK--EKA-----KKEGS 126 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH--Hhc-----ccCCC
Confidence 6899999999999887643 4455 999986222222479999999999999985321 100 11001
Q ss_pred CCCCChHHHHHHHHHHh
Q 007908 539 SVPIPMPVLLRVRELAE 555 (585)
Q Consensus 539 ~~piP~~iL~RVreLA~ 555 (585)
...-+..+..++-.|.-
T Consensus 127 ~~~s~~~ff~~le~~~~ 143 (345)
T KOG4282|consen 127 GEGSSWKFFSELEALLI 143 (345)
T ss_pred CCCccchHHHHHHHHHh
Confidence 23456677777766664
No 27
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=87.77 E-value=0.62 Score=56.01 Aligned_cols=54 Identities=22% Similarity=0.327 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhh-------hcc-cCCCCChhhHHHHHHHhhcc
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRL-------AFA-SYSYRTSVDLKDKWRNLLKA 520 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~G~W~~Ik~~-------~f~-~f~~RT~VDLKDKWRNLlK~ 520 (585)
+.+.||.+|+..|+-.+.+||.|+|..|+.. .|+ .|..||+..|+.|-..|++.
T Consensus 925 ~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~~ 986 (1033)
T PLN03142 925 KGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIRL 986 (1033)
T ss_pred CCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHHH
Confidence 3567999999999999999999999999752 122 24799999999999888864
No 28
>PF11149 DUF2924: Protein of unknown function (DUF2924); InterPro: IPR021322 This entry is represented by Bacteriophage WO, Gp30. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This bacterial family of proteins has no known function.
Probab=84.25 E-value=0.89 Score=43.22 Aligned_cols=39 Identities=26% Similarity=0.575 Sum_probs=36.7
Q ss_pred eccCcCHHHHHHHHhhhcCCccccchhHHHHHHhhhccc
Q 007908 175 CLDNLSIKELHETFKATFGRETTVKDKQWLKRRIAMGLT 213 (585)
Q Consensus 175 ~LDnLsIreL~E~FraTFGReTtVKDK~WLKRrIsmGL~ 213 (585)
-|..|++.||.+.++..||.++---.++||.+||+.-++
T Consensus 7 ~L~~l~~~eL~~~W~~~fg~~pp~~~r~~L~~rlAyriQ 45 (136)
T PF11149_consen 7 ALPDLPMPELRARWRRLFGSPPPHHNRDFLERRLAYRIQ 45 (136)
T ss_pred hcccCCHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999998775
No 29
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=83.68 E-value=1.1 Score=51.18 Aligned_cols=59 Identities=20% Similarity=0.443 Sum_probs=47.1
Q ss_pred CCCCCCCHHHHHHHHHHHH-------hh------------------CCCCchhhhhhhcccCCCCChhhHHHHHHHhhc-
Q 007908 466 KHHRAWTLSEVMKLVEGVS-------KY------------------GAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK- 519 (585)
Q Consensus 466 Kkrr~WT~EEveaLv~GVe-------Ky------------------G~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK- 519 (585)
+.+.+||.||++.|++.|+ .| -.-+|..|.. .+..|+.++|+-||-.|+.
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse----~~~TR~~~qCr~Kw~kl~~~ 509 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSE----MLGTRSRIQCRYKWYKLTTS 509 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhH----hhcCCCcchHHHHHHHHHhh
Confidence 5689999999999999996 34 1238999974 4679999999999999996
Q ss_pred ccCCCCCCC
Q 007908 520 ASLAQTPPD 528 (585)
Q Consensus 520 ~s~~q~p~~ 528 (585)
+++.+.++.
T Consensus 510 ~s~n~~~~~ 518 (607)
T KOG0051|consen 510 PSFNKRQES 518 (607)
T ss_pred HHhhccccc
Confidence 566555554
No 30
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=82.77 E-value=1.9 Score=36.14 Aligned_cols=51 Identities=18% Similarity=0.303 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHHHHhhCC------C--CchhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 007908 468 HRAWTLSEVMKLVEGVSKYGA------G--RWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 521 (585)
Q Consensus 468 rr~WT~EEveaLv~GVeKyG~------G--~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s 521 (585)
|.++|.+||.+|++-|..+.. | -|+.+... ....+|--.++|||+.-++..
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~---~~t~HtwQSwR~Ry~K~L~~~ 60 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEK---HPTRHTWQSWRDRYLKHLRGR 60 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS----SSS--SHHHHHHHHHHT---
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcc
Confidence 678999999999999965532 2 26655432 224899999999998776653
No 31
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=71.49 E-value=3.1 Score=45.74 Aligned_cols=54 Identities=30% Similarity=0.437 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCchhhhhhhc-ccCC-CCChhhHHHHH----HHhhcccCC
Q 007908 469 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAF-ASYS-YRTSVDLKDKW----RNLLKASLA 523 (585)
Q Consensus 469 r~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f-~~f~-~RT~VDLKDKW----RNLlK~s~~ 523 (585)
..||.+|.+.|.+..++|-. +|-.|.+.+- ..|. +||--|||||| |+|+++.-.
T Consensus 131 n~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~ 190 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAP 190 (445)
T ss_pred ccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHccCC
Confidence 67999999999999999999 9999986432 2354 59999999998 566665543
No 32
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=71.22 E-value=7 Score=32.90 Aligned_cols=50 Identities=26% Similarity=0.389 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHhh-------CCCC-----chhhhhhhcccC-CCCChhhHHHHHHHhhc
Q 007908 470 AWTLSEVMKLVEGVSKY-------GAGR-----WSEIKRLAFASY-SYRTSVDLKDKWRNLLK 519 (585)
Q Consensus 470 ~WT~EEveaLv~GVeKy-------G~G~-----W~~Ik~~~f~~f-~~RT~VDLKDKWRNLlK 519 (585)
.||++++..|++.+... +.|. |..|.......+ ..-|..+||.||..|.+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 59999999999988654 2333 666664322223 45678899999887765
No 33
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=70.33 E-value=2.8 Score=41.36 Aligned_cols=48 Identities=29% Similarity=0.614 Sum_probs=35.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhh-cccCC--CCC------hhhHHHHH
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLA-FASYS--YRT------SVDLKDKW 514 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~-f~~f~--~RT------~VDLKDKW 514 (585)
...-|-..-+-.|+.||-+||-|+|.+|.++. |.+++ -++ .-++|.|+
T Consensus 2 ~~~iw~r~hdywll~gi~~hgy~rwqdi~nd~~f~IiNEPFk~e~~kgnfle~KNkF 58 (173)
T PF08074_consen 2 EYEIWHRRHDYWLLAGIVKHGYGRWQDIQNDPRFAIINEPFKTESQKGNFLEMKNKF 58 (173)
T ss_pred hhhhhhhhhhHHHHhHHhhccchhHHHHhcCCceeeecccccccccccchHHHHHHH
Confidence 34568888899999999999999999999753 33332 233 34888876
No 34
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=67.04 E-value=7.6 Score=42.85 Aligned_cols=52 Identities=23% Similarity=0.397 Sum_probs=45.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 007908 464 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 520 (585)
Q Consensus 464 rRKkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~ 520 (585)
+++..-+||.+|.+.+.+++..+|. .+..|.. .|++|...++|-||.+--|.
T Consensus 361 ~~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~----lfP~R~RkqIKaKfi~Eek~ 412 (507)
T COG5118 361 KKKGALRWSKKEIEKFYKALSIWGT-DFSLISS----LFPNRERKQIKAKFIKEEKV 412 (507)
T ss_pred CCCCCCcccHHHHHHHHHHHHHhcc-hHHHHHH----hcCchhHHHHHHHHHHHhhh
Confidence 3566889999999999999999999 8999974 47899999999999876653
No 35
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=63.51 E-value=4.8 Score=49.52 Aligned_cols=53 Identities=21% Similarity=0.297 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCC--------CCChhhHHHHHHHhhc
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYS--------YRTSVDLKDKWRNLLK 519 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~--------~RT~VDLKDKWRNLlK 519 (585)
.---|..+++..|+-||-+||.|+|..|+.+..--|. .=++++|.-|=.-|++
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~l~dKi~~~e~~P~a~~L~~R~~yLls 1192 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLGLTDKIFLVETVPQAKHLQRRADYLLS 1192 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccCccccchhhhcccccCCchHHHHHHHHHHHH
Confidence 4567999999999999999999999999976442222 3346677766555554
No 36
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=60.26 E-value=18 Score=32.30 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=37.5
Q ss_pred CCCCCCHHHHHHHHHHHHhh----CCCCchhhhhhh---cccC-CCCChhhHHHHHHHhhcc
Q 007908 467 HHRAWTLSEVMKLVEGVSKY----GAGRWSEIKRLA---FASY-SYRTSVDLKDKWRNLLKA 520 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKy----G~G~W~~Ik~~~---f~~f-~~RT~VDLKDKWRNLlK~ 520 (585)
-.|.||+++|-.|++|+-.| |.....++...+ ...+ .+=+..||.+|-|.|.+.
T Consensus 3 ~qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~K 64 (98)
T PF04504_consen 3 FQRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKK 64 (98)
T ss_pred CcCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 45779999999999999888 765444443211 1112 234778999999998874
No 37
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=43.04 E-value=20 Score=41.03 Aligned_cols=48 Identities=23% Similarity=0.365 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 520 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~ 520 (585)
++--|+.||++.|+....-+-. .|..|+. +-+||+.+|-.||-+|+-.
T Consensus 58 ~~tews~eederlLhlakl~p~-qwrtIa~-----i~gr~~~qc~eRy~~ll~~ 105 (617)
T KOG0050|consen 58 KKTEWSREEDERLLHLAKLEPT-QWRTIAD-----IMGRTSQQCLERYNNLLDV 105 (617)
T ss_pred hhhhhhhhHHHHHHHHHHhcCC-ccchHHH-----HhhhhHHHHHHHHHHHHHH
Confidence 3567999999999998887777 9999984 4589999999999999864
No 38
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=38.69 E-value=58 Score=31.18 Aligned_cols=52 Identities=21% Similarity=0.201 Sum_probs=41.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhh
Q 007908 466 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 518 (585)
Q Consensus 466 Kkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLl 518 (585)
++.++=|..|.+.+...|++||. .+.....+.--..--.|..+|+.+.+.+.
T Consensus 112 ~~~~~ls~~e~~~i~~Li~KhGd-Dy~aMarD~KLN~~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 112 KKPRRLSEREIEYIEYLIEKHGD-DYKAMARDRKLNYMQHTPGQLRRKIRKYK 163 (164)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-cHHHHhccCCCCcccCCHHHHHHHHHHhc
Confidence 56788899999999999999996 77777654332334689999998877654
No 39
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=27.23 E-value=39 Score=33.56 Aligned_cols=51 Identities=24% Similarity=0.292 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcc---cCCCCChhhHHHHHHHhhc
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFA---SYSYRTSVDLKDKWRNLLK 519 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~---~f~~RT~VDLKDKWRNLlK 519 (585)
+...||.||+..|-+-|-+|+.--=+.+. .|. ..-.||+..|.+||-..++
T Consensus 4 rqdawt~e~d~llae~vl~~i~eg~tql~--afe~~g~~L~rt~aac~fRwNs~vr 57 (170)
T PRK13923 4 RQDAWTQERDGLLAEVVLRHIREGGTQLK--AFEEVGDALKRTAAACGFRWNSVVR 57 (170)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhccchHHH--HHHHHHHHHhhhHHHHHhHHHHHHH
Confidence 45689999999999999999863334443 232 2348999999999955555
No 40
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=23.34 E-value=54 Score=32.43 Aligned_cols=54 Identities=22% Similarity=0.308 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcc---cCCCCChhhHHHHHHHhhcccCC
Q 007908 468 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFA---SYSYRTSVDLKDKWRNLLKASLA 523 (585)
Q Consensus 468 rr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~---~f~~RT~VDLKDKWRNLlK~s~~ 523 (585)
.-.||.|||..|-+-|-+|=.--=+.+. +|. .--+||+.-|-=||-..++..+.
T Consensus 4 QDAWT~eeDlLLAEtVLrhIReG~TQL~--AFeEvg~~L~RTsAACGFRWNs~VRkqY~ 60 (161)
T TIGR02894 4 QDAWTHEEDLLLAETVLRHIREGSTQLS--AFEEVGRALNRTAAACGFRWNAYVRKQYE 60 (161)
T ss_pred ccccccHHHHHHHHHHHHHHhcchHHHH--HHHHHHHHHcccHHHhcchHHHHHHHHHH
Confidence 4679999999999999988221113333 332 12489999999999999985443
No 41
>PLN03162 golden-2 like transcription factor; Provisional
Probab=22.54 E-value=2.7e+02 Score=31.36 Aligned_cols=55 Identities=22% Similarity=0.289 Sum_probs=39.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCC--CchhhhhhhcccCCCCChhhHH---HHHHHhhcc
Q 007908 464 RRKHHRAWTLSEVMKLVEGVSKYGAG--RWSEIKRLAFASYSYRTSVDLK---DKWRNLLKA 520 (585)
Q Consensus 464 rRKkrr~WT~EEveaLv~GVeKyG~G--~W~~Ik~~~f~~f~~RT~VDLK---DKWRNLlK~ 520 (585)
++|.|-.||+|=-+.++++|++.|.- .-+.|++. -...+=|.-++| .|||..++.
T Consensus 233 ~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILel--MnV~GLTRenVKSHLQKYRl~rk~ 292 (526)
T PLN03162 233 KKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILEL--MGVQCLTRHNIASHLQKYRSHRRH 292 (526)
T ss_pred CCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHH--cCCCCcCHHHHHHHHHHHHHhccc
Confidence 56788999999999999999999952 34556542 123455666665 678887763
No 42
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=22.30 E-value=1.8e+02 Score=34.44 Aligned_cols=27 Identities=19% Similarity=0.471 Sum_probs=24.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhh
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGAGRWSEI 494 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~G~W~~I 494 (585)
.++.||-.|++++.+|+..||. .+..|
T Consensus 87 ~ktaWt~~E~~~Ffdal~~~GK-dFe~V 113 (782)
T KOG4468|consen 87 AKTAWTHQEEESFFDALRQVGK-DFEKV 113 (782)
T ss_pred cccccchhhHHHHHHHHHHhcc-cHHHH
Confidence 3779999999999999999998 77776
No 43
>cd01187 INT_SG4 INT_SG4, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 4, N- and C-terminal domains. The CD contains mainly predicted bacterial integrase/recombinases for which not much biochemical characterization is available.
Probab=20.66 E-value=1.9e+02 Score=28.36 Aligned_cols=82 Identities=13% Similarity=0.141 Sum_probs=49.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCC------chhhhhhhcccCCCCChhhHHHHHHHhhcc-cCCCCCCCcccccccCCCC
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGAGR------WSEIKRLAFASYSYRTSVDLKDKWRNLLKA-SLAQTPPDSRMGARKHASS 539 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~G~------W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~-s~~q~p~~~g~~~Rk~~~~ 539 (585)
..+.||.+|..+|++++..++... |..|.... ....-|.+-=+.-+|..+-.. ....-+..++ ++. +.
T Consensus 98 ~~~~lt~~e~~~l~~~~~~~~~~~~~~~~~~~~~i~ll-~~tGlR~~E~~~L~~~did~~~~~i~i~~~K~---~~~-r~ 172 (299)
T cd01187 98 TPYIYTDEEIQRLLAAALQLPPTSGLRPWTYRTLFGLL-AVTGLRLGEALRLRLSDVDLDSGILTVRDSKF---GKS-RL 172 (299)
T ss_pred CCccCCHHHHHHHHHHHHhCCCCCCchhhHHHHHHHHH-HHhCCcHHHHHhCcHHhcCCCCCeEEEEecCC---CCc-cE
Confidence 345799999999999998776532 44443211 123568877777778766421 1110011111 222 57
Q ss_pred CCCChHHHHHHHHH
Q 007908 540 VPIPMPVLLRVREL 553 (585)
Q Consensus 540 ~piP~~iL~RVreL 553 (585)
+|+|+++..-+.+.
T Consensus 173 vpl~~~l~~~l~~~ 186 (299)
T cd01187 173 VPLHASTRAALRDY 186 (299)
T ss_pred EeCCHHHHHHHHHH
Confidence 89999987777664
Done!