Query 007908
Match_columns 585
No_of_seqs 164 out of 438
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 13:28:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007908.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007908hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aje_A Telomere repeat-binding 99.9 1.9E-22 6.4E-27 177.3 8.2 86 463-557 8-93 (105)
2 2roh_A RTBP1, telomere binding 99.8 2.5E-21 8.5E-26 174.2 10.7 102 449-559 8-113 (122)
3 2ckx_A NGTRF1, telomere bindin 99.8 6.9E-21 2.4E-25 160.9 6.6 81 469-558 1-81 (83)
4 2juh_A Telomere binding protei 99.8 1.6E-19 5.5E-24 162.3 9.7 86 462-556 11-96 (121)
5 1x58_A Hypothetical protein 49 99.6 4.4E-16 1.5E-20 126.2 6.7 54 466-521 6-59 (62)
6 3sjm_A Telomeric repeat-bindin 99.6 9.8E-16 3.3E-20 123.3 6.2 55 466-522 9-63 (64)
7 1ity_A TRF1; helix-turn-helix, 99.5 1.5E-14 5.2E-19 116.4 6.9 63 463-527 5-67 (69)
8 1w0t_A Telomeric repeat bindin 99.4 6.1E-14 2.1E-18 107.7 5.4 52 467-520 1-52 (53)
9 2dim_A Cell division cycle 5-l 99.3 1.9E-12 6.5E-17 104.3 7.0 60 465-528 6-65 (70)
10 1guu_A C-MYB, MYB proto-oncoge 99.3 2.9E-12 1E-16 97.5 5.7 51 467-521 2-52 (52)
11 2d9a_A B-MYB, MYB-related prot 99.3 3.5E-12 1.2E-16 99.8 6.3 54 465-522 5-58 (60)
12 1gvd_A MYB proto-oncogene prot 99.3 7E-12 2.4E-16 95.6 6.0 51 467-521 2-52 (52)
13 1x41_A Transcriptional adaptor 99.1 4.4E-11 1.5E-15 94.2 5.4 52 466-521 6-57 (60)
14 1gv2_A C-MYB, MYB proto-oncoge 99.1 7.2E-11 2.5E-15 100.7 6.8 58 467-528 3-60 (105)
15 2k9n_A MYB24; R2R3 domain, DNA 99.1 1E-10 3.5E-15 100.7 6.0 57 468-528 1-57 (107)
16 3osg_A MYB21; transcription-DN 99.1 1.5E-10 5.1E-15 102.5 6.9 60 464-528 7-66 (126)
17 2elk_A SPCC24B10.08C protein; 99.1 1E-10 3.5E-15 91.8 4.5 47 468-518 9-56 (58)
18 3zqc_A MYB3; transcription-DNA 99.0 2.2E-10 7.6E-15 101.8 6.9 57 468-528 2-58 (131)
19 1h8a_C AMV V-MYB, MYB transfor 99.0 2.9E-10 9.8E-15 100.4 6.2 58 467-528 26-83 (128)
20 2yum_A ZZZ3 protein, zinc fing 98.9 6.9E-10 2.4E-14 90.3 4.5 55 465-523 5-64 (75)
21 2din_A Cell division cycle 5-l 98.9 5.4E-10 1.8E-14 89.0 3.5 55 466-526 7-61 (66)
22 2cu7_A KIAA1915 protein; nucle 98.9 1.3E-09 4.5E-14 88.4 4.9 54 466-524 7-60 (72)
23 2yus_A SWI/SNF-related matrix- 98.9 1.6E-09 5.3E-14 90.6 4.8 52 463-519 13-64 (79)
24 1h89_C C-MYB, MYB proto-oncoge 98.8 8.5E-10 2.9E-14 100.5 1.9 58 467-528 5-62 (159)
25 1h89_C C-MYB, MYB proto-oncoge 98.8 4.6E-09 1.6E-13 95.6 6.6 58 467-528 57-114 (159)
26 3zqc_A MYB3; transcription-DNA 98.8 8.1E-09 2.8E-13 91.8 7.0 58 467-529 53-110 (131)
27 2llk_A Cyclin-D-binding MYB-li 98.8 4.1E-09 1.4E-13 87.3 4.1 50 465-520 20-69 (73)
28 2cqr_A RSGI RUH-043, DNAJ homo 98.7 1.1E-08 3.9E-13 84.6 4.8 54 463-520 13-69 (73)
29 1gv2_A C-MYB, MYB proto-oncoge 98.7 1.7E-08 5.8E-13 86.0 5.8 49 467-520 55-103 (105)
30 3osg_A MYB21; transcription-DN 98.6 2.7E-08 9.3E-13 88.0 5.5 50 467-521 61-110 (126)
31 2k9n_A MYB24; R2R3 domain, DNA 98.6 3.1E-08 1.1E-12 85.3 4.3 50 467-521 52-101 (107)
32 1h8a_C AMV V-MYB, MYB transfor 98.6 5E-08 1.7E-12 86.1 5.6 50 467-521 78-127 (128)
33 2ltp_A Nuclear receptor corepr 97.9 1.2E-08 3.9E-13 86.5 0.0 49 467-520 15-63 (89)
34 2cjj_A Radialis; plant develop 98.3 3.9E-07 1.3E-11 78.6 4.4 49 468-520 8-59 (93)
35 1ign_A Protein (RAP1); RAP1,ye 98.1 1.9E-06 6.5E-11 85.6 5.0 53 467-523 7-64 (246)
36 2eqr_A N-COR1, N-COR, nuclear 98.0 7.2E-06 2.4E-10 64.9 6.1 52 463-519 7-58 (61)
37 2cqq_A RSGI RUH-037, DNAJ homo 97.9 1.5E-05 5.1E-10 65.8 5.8 49 467-520 7-58 (72)
38 3hm5_A DNA methyltransferase 1 97.5 0.0001 3.5E-09 64.0 4.9 51 469-520 31-82 (93)
39 1wgx_A KIAA1903 protein; MYB D 97.2 0.00041 1.4E-08 57.8 5.6 49 468-520 8-59 (73)
40 2iw5_B Protein corest, REST co 97.2 0.00029 1E-08 69.7 4.9 50 465-519 130-179 (235)
41 2ebi_A DNA binding protein GT- 97.1 0.00016 5.3E-09 60.1 2.3 54 466-520 2-65 (86)
42 1fex_A TRF2-interacting telome 96.9 0.0007 2.4E-08 53.8 4.2 49 468-519 2-58 (59)
43 4b4c_A Chromodomain-helicase-D 96.9 0.00079 2.7E-08 63.2 5.2 52 468-519 134-195 (211)
44 4iej_A DNA methyltransferase 1 96.3 0.0034 1.2E-07 54.6 4.8 49 470-519 32-81 (93)
45 2yqk_A Arginine-glutamic acid 96.2 0.011 3.7E-07 47.2 6.7 52 465-520 6-57 (63)
46 2xb0_X Chromo domain-containin 95.7 0.0052 1.8E-07 61.8 3.6 31 469-499 169-199 (270)
47 2crg_A Metastasis associated p 95.6 0.029 1E-06 45.7 6.7 54 464-521 4-57 (70)
48 4eef_G F-HB80.4, designed hema 95.0 0.0078 2.7E-07 50.6 1.6 44 468-515 20-66 (74)
49 2xag_B REST corepressor 1; ami 94.7 0.028 9.7E-07 60.6 5.6 49 466-519 378-426 (482)
50 1ofc_X ISWI protein; nuclear p 94.7 0.016 5.3E-07 59.4 3.3 54 467-520 211-275 (304)
51 4b4c_A Chromodomain-helicase-D 93.8 0.05 1.7E-06 50.9 4.6 52 465-518 4-57 (211)
52 2y9y_A Imitation switch protei 93.0 0.068 2.3E-06 56.1 4.4 53 468-520 228-291 (374)
53 1irz_A ARR10-B; helix-turn-hel 92.9 0.22 7.4E-06 40.7 6.2 54 464-519 3-61 (64)
54 4a69_C Nuclear receptor corepr 92.6 0.1 3.4E-06 44.8 4.1 48 464-516 39-86 (94)
55 1ug2_A 2610100B20RIK gene prod 88.5 0.35 1.2E-05 42.3 3.8 51 466-520 31-83 (95)
56 2lr8_A CAsp8-associated protei 85.2 0.18 6E-06 42.1 0.0 49 467-520 13-63 (70)
57 2xb0_X Chromo domain-containin 84.2 1.4 4.7E-05 44.4 6.1 50 467-518 2-53 (270)
58 1ign_A Protein (RAP1); RAP1,ye 81.8 1.1 3.8E-05 44.8 4.2 28 489-520 172-199 (246)
59 2xag_B REST corepressor 1; ami 56.3 2.3 8E-05 46.0 0.0 47 469-520 190-236 (482)
60 1ofc_X ISWI protein; nuclear p 50.2 16 0.00056 37.3 5.0 48 468-519 110-157 (304)
61 2olm_A Nucleoporin-like protei 20.0 39 0.0013 30.9 1.6 49 63-114 10-66 (140)
No 1
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.87 E-value=1.9e-22 Score=177.34 Aligned_cols=86 Identities=37% Similarity=0.646 Sum_probs=75.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccCCCCCCCcccccccCCCCCCC
Q 007908 463 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHASSVPI 542 (585)
Q Consensus 463 krRKkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~~g~~~Rk~~~~~pi 542 (585)
++|+++++||+|||++|++||++||.|+|+.|+..+|..|.+||++|||||||||++..... |.. | .+.||
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~-p~~-----~---rg~~~ 78 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKIS-PQQ-----R---RGEPV 78 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCC-TTT-----T---TCCSC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCC-ccc-----c---cCCCC
Confidence 56788999999999999999999999999999987777789999999999999999977652 332 2 46899
Q ss_pred ChHHHHHHHHHHhhc
Q 007908 543 PMPVLLRVRELAEMQ 557 (585)
Q Consensus 543 P~~iL~RVreLA~~q 557 (585)
|+++|+||++|++..
T Consensus 79 P~~~l~rv~~~~~~~ 93 (105)
T 2aje_A 79 PQELLNRVLNAHGYW 93 (105)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998874
No 2
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.85 E-value=2.5e-21 Score=174.21 Aligned_cols=102 Identities=35% Similarity=0.533 Sum_probs=82.4
Q ss_pred CCCCCcccccCCCC----CCCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccCCC
Q 007908 449 PDDNPATVRAVKGG----VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQ 524 (585)
Q Consensus 449 s~d~~~~~p~~k~g----krRKkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~~q 524 (585)
+.+..+.+|..|.+ .+||++++||.|||++|++||++||.|+|+.|+..+|..|.+||++|||||||||++.....
T Consensus 8 ~~~~~~~~p~~k~~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~ 87 (122)
T 2roh_A 8 NSLALANVPLSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIA 87 (122)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSC
T ss_pred CcccccccCcccCCCcCcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCC
Confidence 33444455554433 67888999999999999999999999999999998777889999999999999999865542
Q ss_pred CCCCcccccccCCCCCCCChHHHHHHHHHHhhcCC
Q 007908 525 TPPDSRMGARKHASSVPIPMPVLLRVRELAEMQSQ 559 (585)
Q Consensus 525 ~p~~~g~~~Rk~~~~~piP~~iL~RVreLA~~q~~ 559 (585)
|.. | ++.++|+++++||+++...+.+
T Consensus 88 -p~~-----k---r~~~~p~e~~~~v~~~h~~~g~ 113 (122)
T 2roh_A 88 -PQQ-----R---RGAPVPQELLDRVLAAQAYWSV 113 (122)
T ss_dssp -TTT-----C---CCSSCCHHHHHHHHHHHHHHHS
T ss_pred -ccc-----c---CCCCCCHHHHHHHHHHHHHHhh
Confidence 332 1 3679999999999998877543
No 3
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.82 E-value=6.9e-21 Score=160.93 Aligned_cols=81 Identities=38% Similarity=0.654 Sum_probs=70.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccCCCCCCCcccccccCCCCCCCChHHHH
Q 007908 469 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHASSVPIPMPVLL 548 (585)
Q Consensus 469 r~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~~g~~~Rk~~~~~piP~~iL~ 548 (585)
++||+||+++|++||++||.|+|+.|++.+|..|.+||++|||||||||++.+... |.. + .+.|||+++|+
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~-p~~------~--~~~~~p~~~~~ 71 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA-PQQ------R--RGEPVPQDLLD 71 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSC-GGG------C--CSSCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCC-ccc------c--cCCCCCHHHHH
Confidence 58999999999999999999999999988777789999999999999999976541 321 2 46899999999
Q ss_pred HHHHHHhhcC
Q 007908 549 RVRELAEMQS 558 (585)
Q Consensus 549 RVreLA~~q~ 558 (585)
||++|.....
T Consensus 72 rv~~~~a~~~ 81 (83)
T 2ckx_A 72 RVLAAHAYWS 81 (83)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 4
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.79 E-value=1.6e-19 Score=162.32 Aligned_cols=86 Identities=36% Similarity=0.625 Sum_probs=74.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccCCCCCCCcccccccCCCCCC
Q 007908 462 GVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHASSVP 541 (585)
Q Consensus 462 gkrRKkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~~g~~~Rk~~~~~p 541 (585)
.+.++++++||+|||++|++||++||.|+|+.|+..++..|.+||++|||||||||++....+ |.. + .+.+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~-p~~------k--rg~~ 81 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA-PQQ------R--RGEP 81 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTC-STT------C--CCSC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccC-Ccc------c--CCCC
Confidence 367888999999999999999999999999999998777889999999999999999865442 322 1 3679
Q ss_pred CChHHHHHHHHHHhh
Q 007908 542 IPMPVLLRVRELAEM 556 (585)
Q Consensus 542 iP~~iL~RVreLA~~ 556 (585)
+|+++++||+++...
T Consensus 82 ~p~e~~~rv~~~h~~ 96 (121)
T 2juh_A 82 VPQDLLDRVLAAHAY 96 (121)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998877
No 5
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.62 E-value=4.4e-16 Score=126.16 Aligned_cols=54 Identities=28% Similarity=0.414 Sum_probs=48.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 007908 466 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 521 (585)
Q Consensus 466 Kkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s 521 (585)
+.+++||+||+++|++||++||. +|+.|+..+ ..|.+||+||||||||||.|..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y-~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSF-PFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHS-CCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhC-CCccCcccchHHHHHHHHHhcc
Confidence 47899999999999999999999 999999753 3479999999999999999864
No 6
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.59 E-value=9.8e-16 Score=123.26 Aligned_cols=55 Identities=33% Similarity=0.727 Sum_probs=48.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccC
Q 007908 466 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASL 522 (585)
Q Consensus 466 Kkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~ 522 (585)
+++++||+|||++|+++|++||.|+|+.|+... .|.+||++||+|||+||+|+++
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~--~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNY--PFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHS--CCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhc--CCCCCCHHHHHHHHHHHhccCC
Confidence 457899999999999999999999999998642 2679999999999999999875
No 7
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.52 E-value=1.5e-14 Score=116.42 Aligned_cols=63 Identities=40% Similarity=0.678 Sum_probs=54.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccCCCCCC
Q 007908 463 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPP 527 (585)
Q Consensus 463 krRKkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~ 527 (585)
..++++++||+||+++|+++|++||.++|+.|+... .|.+||++||++||+|++++.+.+...
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~--~~~~Rt~~qcr~Rw~~~l~p~i~k~~~ 67 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHY--KFNNRTSVMLKDRWRTMKKLKLISSDS 67 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHS--CCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHc--CcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence 346788999999999999999999999999998531 133999999999999999999886543
No 8
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.45 E-value=6.1e-14 Score=107.72 Aligned_cols=52 Identities=44% Similarity=0.760 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 520 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~ 520 (585)
++++||+|||+.|+++|++||.++|+.|+... .|.+||++||++||+|++|.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~--~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHY--KFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHS--CCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHc--CCCCCCHHHHHHHHHHHHcc
Confidence 47899999999999999999999999998531 13389999999999999975
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.9e-12 Score=104.31 Aligned_cols=60 Identities=25% Similarity=0.422 Sum_probs=54.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccCCCCCCC
Q 007908 465 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 528 (585)
Q Consensus 465 RKkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 528 (585)
..++++||+||++.|+++|++||.++|..|+. .+++||..||++||.|++++.+.++||.
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~----~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt 65 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGKNQWSRIAS----LLHRKSAKQCKARWYEWLDPSIKKTEWS 65 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHH----HSTTCCHHHHHHHHHHTSCSSSCCCCSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHH----HhcCCCHHHHHHHHHHHcCCcccCCCCC
Confidence 34578999999999999999999999999984 3679999999999999999999999986
No 10
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.29 E-value=2.9e-12 Score=97.51 Aligned_cols=51 Identities=27% Similarity=0.504 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 521 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s 521 (585)
++.+||+||++.|+++|++||.++|+.|+. .|++||..+|++||.+++.+.
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~----~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIAN----YLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHH----TSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHH----HcCCCCHHHHHHHHHHHcCcC
Confidence 468999999999999999999999999984 368999999999999999763
No 11
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.29 E-value=3.5e-12 Score=99.80 Aligned_cols=54 Identities=20% Similarity=0.402 Sum_probs=48.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccC
Q 007908 465 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASL 522 (585)
Q Consensus 465 RKkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~ 522 (585)
..++.+||+||++.|+++|++||.++|..|+. .|++||..+|++||.+++++.+
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~----~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQQDWKFLAS----HFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHH----HCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHH----HccCCCHHHHHHHHHHHcCCcc
Confidence 45678999999999999999999999999984 3689999999999999998875
No 12
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.25 E-value=7e-12 Score=95.58 Aligned_cols=51 Identities=31% Similarity=0.608 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 521 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s 521 (585)
++.+||+||++.|+++|++||.++|..|+. .+++||..+|++||.|++.+.
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~----~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAK----HLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHT----TSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHH----HcCCCCHHHHHHHHHHHcCcC
Confidence 367999999999999999999999999983 468999999999999999763
No 13
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.13 E-value=4.4e-11 Score=94.19 Aligned_cols=52 Identities=21% Similarity=0.482 Sum_probs=46.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 007908 466 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 521 (585)
Q Consensus 466 Kkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s 521 (585)
..+.+||+|||+.|+++|++||.++|..|+. .+++||..||++||.+++...
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~----~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVAN----QMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHH----HHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHH----HhCCCCHHHHHHHHHHHccCC
Confidence 4578999999999999999999999999984 357899999999999998754
No 14
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.12 E-value=7.2e-11 Score=100.69 Aligned_cols=58 Identities=28% Similarity=0.509 Sum_probs=52.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccCCCCCCC
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 528 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 528 (585)
++++||+||++.|+++|++||.++|..|+ ..+++||+.+|++||++++.+.+..+||.
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia----~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt 60 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIA----KHLKGRIGKQCRERWHNHLNPEVKKTSWT 60 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHH----TTSTTCCHHHHHHHHHHTTCCCCCCCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHh----hhhcCCCHHHHHHHHHhccCCcccccCCC
Confidence 46799999999999999999999999998 34789999999999999999988878885
No 15
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.08 E-value=1e-10 Score=100.73 Aligned_cols=57 Identities=26% Similarity=0.478 Sum_probs=52.3
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccCCCCCCC
Q 007908 468 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 528 (585)
Q Consensus 468 rr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 528 (585)
+++||+||++.|+++|++||.++|..|+. .+++||+.+|++||.|++.+.+..+||.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~----~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT 57 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQ----LMITRNPRQCRERWNNYINPALRTDPWS 57 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHH----HTTTSCHHHHHHHHHHHSSSCCTTCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhh----hcCCCCHHHHHHHHHHHHcccccccccC
Confidence 46899999999999999999999999984 3679999999999999999998888885
No 16
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.07 E-value=1.5e-10 Score=102.51 Aligned_cols=60 Identities=25% Similarity=0.509 Sum_probs=54.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccCCCCCCC
Q 007908 464 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 528 (585)
Q Consensus 464 rRKkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 528 (585)
+..++++||+|||+.|+.+|++||. +|..|+. .+++||+.+|++||+|.+.+.+.++||.
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~----~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT 66 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAA----TFPNRNARQCRDRWKNYLAPSISHTPWT 66 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHH----TCTTCCHHHHHHHHHHHTSTTSCCSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHH----HcCCCCHHHHHHHHhhhcccccccccCC
Confidence 3456889999999999999999999 9999983 4789999999999999999999888886
No 17
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.06 E-value=1e-10 Score=91.81 Aligned_cols=47 Identities=21% Similarity=0.502 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCC-CCChhhHHHHHHHhh
Q 007908 468 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYS-YRTSVDLKDKWRNLL 518 (585)
Q Consensus 468 rr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~-~RT~VDLKDKWRNLl 518 (585)
+.+||++|++.|+++|++||.++|..|+. .++ +||..+|++||.++.
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~----~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIAD----YVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHH----HHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHH----HHCCCCCHHHHHHHHHHHc
Confidence 56899999999999999999999999984 356 899999999999875
No 18
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.05 E-value=2.2e-10 Score=101.83 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=52.8
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccCCCCCCC
Q 007908 468 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 528 (585)
Q Consensus 468 rr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 528 (585)
+++||+|||+.|+.+|++||.++|..|+ ..+++||+.||++||+|.+.+.+.++||.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia----~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt 58 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRIT----SFLPNRSPKQCRERWFNHLDPAVVKHAWT 58 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGT----TSCTTSCHHHHHHHHHHHTSTTCCCSCCC
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHH----HHHCCCCHHHHHHHHhhccCccccCCCCC
Confidence 5789999999999999999999999998 34789999999999999999999888885
No 19
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.01 E-value=2.9e-10 Score=100.42 Aligned_cols=58 Identities=29% Similarity=0.603 Sum_probs=52.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccCCCCCCC
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 528 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 528 (585)
.+++||+||++.|+++|++||.++|..|+. .+++||..+|++||.+++.+.+..+||.
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~----~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT 83 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAK----HLKGRIGKQCRERWHNHLNPEVKKTSWT 83 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHH----HSSSCCHHHHHHHHHHTTCSSSCCSCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHH----HhcCCcHHHHHHHHHHhcccccccccCC
Confidence 467999999999999999999999999984 3689999999999999999988888885
No 20
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=6.9e-10 Score=90.25 Aligned_cols=55 Identities=22% Similarity=0.364 Sum_probs=47.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCC-----CCchhhhhhhcccCCCCChhhHHHHHHHhhcccCC
Q 007908 465 RKHHRAWTLSEVMKLVEGVSKYGA-----GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLA 523 (585)
Q Consensus 465 RKkrr~WT~EEveaLv~GVeKyG~-----G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~~ 523 (585)
...+.+||.||++.|+++|++||. ++|..|+. .+.+||..||+++|.+++.....
T Consensus 5 ~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~----~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 5 SSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIAD----ELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHH----HHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHH----HhCCCCHHHHHHHHHHHHHHHHh
Confidence 345779999999999999999997 79999984 36799999999999999876543
No 21
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=5.4e-10 Score=89.05 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=48.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccCCCCC
Q 007908 466 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTP 526 (585)
Q Consensus 466 Kkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p 526 (585)
.++.+||.||++.|+++|++||. +|..|+. +.+||..+|++||.+++++.+...+
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-----~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-----IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-----HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-----ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 35679999999999999999999 9999984 3479999999999999998876543
No 22
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.88 E-value=1.3e-09 Score=88.44 Aligned_cols=54 Identities=26% Similarity=0.491 Sum_probs=48.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccCCC
Q 007908 466 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQ 524 (585)
Q Consensus 466 Kkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~~q 524 (585)
..+.+||.||++.|+++|++||. +|..|.. .|++||..+||.+|.++++.....
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~----~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR-RWTKISK----LIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS-CHHHHHH----HHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-CHHHHHH----HcCCCCHHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999 9999984 368999999999999999876654
No 23
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.86 E-value=1.6e-09 Score=90.60 Aligned_cols=52 Identities=21% Similarity=0.343 Sum_probs=45.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhc
Q 007908 463 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 519 (585)
Q Consensus 463 krRKkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK 519 (585)
+.+..+.+||.||++.|+++|++|| ++|..|+. .+.+||..+|+.+|.++..
T Consensus 13 ~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~----~v~~RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 13 KGASAGREWTEQETLLLLEALEMYK-DDWNKVSE----HVGSRTQDECILHFLRLPI 64 (79)
T ss_dssp CSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHH----HHSSCCHHHHHHHHTTSCC
T ss_pred cccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHH----HcCCCCHHHHHHHHHHhcc
Confidence 4455678999999999999999999 89999984 2568999999999999843
No 24
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.81 E-value=8.5e-10 Score=100.49 Aligned_cols=58 Identities=28% Similarity=0.479 Sum_probs=18.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccCCCCCCC
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 528 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 528 (585)
.+++||+||++.|+++|++||.++|..|+. .+++||+.+|++||+|++.+.+.++||.
T Consensus 5 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~----~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt 62 (159)
T 1h89_C 5 GKTRWTREEDEKLKKLVEQNGTDDWKVIAN----YLPNRTDVQCQHRWQKVLNPELIKGPWT 62 (159)
T ss_dssp ------------------------------------------CHHHHHHTTTCTTCCCSCCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHH----HcCCCCHHHHHHHHHHccCCCcCCCCCC
Confidence 467899999999999999999999999983 4679999999999999999998888885
No 25
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.81 E-value=4.6e-09 Score=95.65 Aligned_cols=58 Identities=28% Similarity=0.527 Sum_probs=52.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccCCCCCCC
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 528 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~ 528 (585)
.+.+||+||++.|+.+|++||.++|..|.. .+++||..+|++||.+++.+.+..+||.
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~----~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT 114 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAK----HLKGRIGKQCRERWHNHLNPEVKKTSWT 114 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHH----TSTTCCHHHHHHHHHHTTCTTSCCSCCC
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHH----HcCCCCHHHHHHHHHHHhCccccccCCC
Confidence 468999999999999999999999999983 4689999999999999999887777774
No 26
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.78 E-value=8.1e-09 Score=91.80 Aligned_cols=58 Identities=22% Similarity=0.441 Sum_probs=51.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcccCCCCCCCc
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDS 529 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~~q~p~~~ 529 (585)
.+.+||+||++.|+++|.+||. +|+.|. ..|++||..+|++||.++++..+..+++.+
T Consensus 53 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia----~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~ 110 (131)
T 3zqc_A 53 VKHAWTPEEDETIFRNYLKLGS-KWSVIA----KLIPGRTDNAIKNRWNSSISKRISTNSNHK 110 (131)
T ss_dssp CCSCCCHHHHHHHHHHHHHSCS-CHHHHT----TTSTTCCHHHHHHHHHHTTGGGCCCCTTSC
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHH----HHcCCCCHHHHHHHHHHHHHHHhhcCCCcc
Confidence 3568999999999999999996 999998 347899999999999999999888777654
No 27
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.76 E-value=4.1e-09 Score=87.34 Aligned_cols=50 Identities=30% Similarity=0.411 Sum_probs=43.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 007908 465 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 520 (585)
Q Consensus 465 RKkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~ 520 (585)
.-.+.+||+|||+.|++.|++||. +|+.|++ .| +||..+||++|+.|.+.
T Consensus 20 ~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~----~l-gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 20 RNHVGKYTPEEIEKLKELRIKHGN-DWATIGA----AL-GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHH----HH-TSCHHHHHHHHHHCSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHH----Hh-CCCHHHHHHHHHHHHHH
Confidence 345789999999999999999998 5999984 36 99999999999987653
No 28
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.70 E-value=1.1e-08 Score=84.62 Aligned_cols=54 Identities=17% Similarity=0.338 Sum_probs=46.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCC---CCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 007908 463 VRRKHHRAWTLSEVMKLVEGVSKYGA---GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 520 (585)
Q Consensus 463 krRKkrr~WT~EEveaLv~GVeKyG~---G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~ 520 (585)
+.+..+.+||.+|+..|+.+|++||. .+|..|+ ..+++||..+|+.+|.+|+..
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA----~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIA----RCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHG----GGCSSSCHHHHHHHHHHHHSS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHH----HHcCCCCHHHHHHHHHHHHHc
Confidence 34556789999999999999999994 5899998 347899999999999999864
No 29
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.69 E-value=1.7e-08 Score=86.03 Aligned_cols=49 Identities=24% Similarity=0.554 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 520 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~ 520 (585)
.+.+||+||++.|+.+|++||. +|+.|.. .|++||..+||+||+++++.
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~----~l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAK----LLPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSS-CHHHHHT----TCTTCCHHHHHHHHHHHTC-
T ss_pred cccCCCHHHHHHHHHHHHHhCC-CHHHHHH----HcCCCCHHHHHHHHHHHHhc
Confidence 4679999999999999999997 9999983 47899999999999999875
No 30
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.63 E-value=2.7e-08 Score=88.03 Aligned_cols=50 Identities=28% Similarity=0.658 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 521 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s 521 (585)
.+.+||.||++.|+++|++||. +|+.|.. .|++||..+||+||++|++.-
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~----~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGR-QWAIIAK----FFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHHT----TSTTCCHHHHHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHHH----HcCCCCHHHHHHHHHHHHHhc
Confidence 3568999999999999999996 9999983 478999999999999998753
No 31
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.57 E-value=3.1e-08 Score=85.27 Aligned_cols=50 Identities=20% Similarity=0.579 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 521 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s 521 (585)
.+.+||+||++.|+.+|.+||. +|+.|.. .|++||..+||+||++|++..
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~----~l~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGP-KWNKISK----FLKNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS-CHHHHHH----HHSSSCHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCc-CHHHHHH----HCCCCCHHHHHHHHHHHHhhH
Confidence 3679999999999999999998 9999984 368999999999999999753
No 32
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.57 E-value=5e-08 Score=86.11 Aligned_cols=50 Identities=24% Similarity=0.537 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 521 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s 521 (585)
++.+||.||++.|+++|++||. +|+.|.. .|++||..+||++|+++++..
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~----~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAK----LLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHGG----GSTTCCHHHHHHHHHTTTTC-
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHHH----HCCCCCHHHHHHHHHHHHhcc
Confidence 4679999999999999999997 9999983 478999999999999998753
No 33
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.92 E-value=1.2e-08 Score=86.53 Aligned_cols=49 Identities=27% Similarity=0.383 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 520 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~ 520 (585)
.+.+||.||++.|+++|++||. +|..|+. .|++||..+|+.+|.++++.
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~----~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGR-NWSAIAR----MVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 4679999999999999999999 8999983 47899999999999999874
No 34
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.30 E-value=3.9e-07 Score=78.58 Aligned_cols=49 Identities=22% Similarity=0.516 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHhhC---CCCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 007908 468 HRAWTLSEVMKLVEGVSKYG---AGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 520 (585)
Q Consensus 468 rr~WT~EEveaLv~GVeKyG---~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~ 520 (585)
..+||.||+..|++++++|| ..+|..|+. .+++||..+|+.+|.+|+..
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~----~vpGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVAR----AVEGRTPEEVKKHYEILVED 59 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHH----HSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH----HcCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999998 457999983 47899999999999999753
No 35
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.11 E-value=1.9e-06 Score=85.60 Aligned_cols=53 Identities=21% Similarity=0.282 Sum_probs=47.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCC-----chhhhhhhcccCCCCChhhHHHHHHHhhcccCC
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGAGR-----WSEIKRLAFASYSYRTSVDLKDKWRNLLKASLA 523 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~G~-----W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s~~ 523 (585)
.+.+||+|||+.|++.|++||..+ |..|+. .+++||.-+||+||++++++.+.
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk----~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH----YVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT----TSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHH----HcCCCCHHHHHHHHHHHHhhhcc
Confidence 467999999999999999999854 999983 48899999999999999998775
No 36
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=7.2e-06 Score=64.94 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=45.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhc
Q 007908 463 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 519 (585)
Q Consensus 463 krRKkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK 519 (585)
+.|+...+||++|.+.+++|+.+||. +|..|+. .+++||..||...|....|
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~----~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIAS----YLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHH----HCTTSCHHHHHHHHHHHTC
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHH----HcCCCCHHHHHHHHHHhcC
Confidence 55778899999999999999999996 9999983 3789999999999977655
No 37
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.90 E-value=1.5e-05 Score=65.78 Aligned_cols=49 Identities=24% Similarity=0.483 Sum_probs=43.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhCC---CCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGA---GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 520 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~---G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~ 520 (585)
....||.||+..|.+++.+|+. .+|..|+.. + +||..+++.+|..|...
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~----l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHE----L-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHH----H-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH----h-CCCHHHHHHHHHHHHHh
Confidence 4568999999999999999994 579999853 3 79999999999999876
No 38
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.47 E-value=0.0001 Score=63.97 Aligned_cols=51 Identities=22% Similarity=0.392 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCchhhhhhh-cccCCCCChhhHHHHHHHhhcc
Q 007908 469 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLA-FASYSYRTSVDLKDKWRNLLKA 520 (585)
Q Consensus 469 r~WT~EEveaLv~GVeKyG~G~W~~Ik~~~-f~~f~~RT~VDLKDKWRNLlK~ 520 (585)
.+||.||++.|.+.+++||. +|..|.+.+ +..+..||-.|||+||..+++.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~ 82 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999 999998532 1234689999999999888764
No 39
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.22 E-value=0.00041 Score=57.80 Aligned_cols=49 Identities=20% Similarity=0.389 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHhhCC---CCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 007908 468 HRAWTLSEVMKLVEGVSKYGA---GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 520 (585)
Q Consensus 468 rr~WT~EEveaLv~GVeKyG~---G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~ 520 (585)
...||.+|+.+|.+++..|+. ++|..|+. .+++||..+|+.+|..|.+.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~----~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAA----AVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHH----HTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHH----HcCCCCHHHHHHHHHHHHhc
Confidence 357999999999999999986 78999983 46789999999999999654
No 40
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.17 E-value=0.00029 Score=69.70 Aligned_cols=50 Identities=24% Similarity=0.454 Sum_probs=44.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhc
Q 007908 465 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 519 (585)
Q Consensus 465 RKkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK 519 (585)
.+...+||++|...+++|+.+||. +|..|.+ .+.+||..+||..|.+..+
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk----~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISD----VIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHH----HHSSCCHHHHHHHHHHTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH----HcCCCCHHHHHHHHHHHHH
Confidence 456889999999999999999998 8999984 3679999999999987664
No 41
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.15 E-value=0.00016 Score=60.09 Aligned_cols=54 Identities=28% Similarity=0.433 Sum_probs=41.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC---------CCchhhhhhhc-ccCCCCChhhHHHHHHHhhcc
Q 007908 466 KHHRAWTLSEVMKLVEGVSKYGA---------GRWSEIKRLAF-ASYSYRTSVDLKDKWRNLLKA 520 (585)
Q Consensus 466 Kkrr~WT~EEveaLv~GVeKyG~---------G~W~~Ik~~~f-~~f~~RT~VDLKDKWRNLlK~ 520 (585)
++...||.+|+.+|+.....+-. ..|..|...-. .-+ .||+.+|++||.||.+.
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~-~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGF-DRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHH
Confidence 45788999999999999975322 27999985211 112 79999999999999985
No 42
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.93 E-value=0.0007 Score=53.80 Aligned_cols=49 Identities=20% Similarity=0.388 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHhh--------CCCCchhhhhhhcccCCCCChhhHHHHHHHhhc
Q 007908 468 HRAWTLSEVMKLVEGVSKY--------GAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 519 (585)
Q Consensus 468 rr~WT~EEveaLv~GVeKy--------G~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK 519 (585)
|.+||+|||.+|++-|.+| |.--|+.+.. ..++.+|-..++|||++.++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~---~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEK---SSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHH---SCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHH---hHCCCCCHHHHHHHHHHHcc
Confidence 6799999999999999999 6567988874 24689999999999998764
No 43
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.92 E-value=0.00079 Score=63.19 Aligned_cols=52 Identities=25% Similarity=0.385 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccC----------CCCChhhHHHHHHHhhc
Q 007908 468 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASY----------SYRTSVDLKDKWRNLLK 519 (585)
Q Consensus 468 rr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f----------~~RT~VDLKDKWRNLlK 519 (585)
...||.+||..|+.||.+||.|+|..|+.+....| ..++++.|..|--.|++
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 45699999999999999999999999997543111 24556667766555544
No 44
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.35 E-value=0.0034 Score=54.61 Aligned_cols=49 Identities=22% Similarity=0.383 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHhhCCCCchhhhhhhc-ccCCCCChhhHHHHHHHhhc
Q 007908 470 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAF-ASYSYRTSVDLKDKWRNLLK 519 (585)
Q Consensus 470 ~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f-~~f~~RT~VDLKDKWRNLlK 519 (585)
.||.||++.|.+.+++|+. +|--|.+.+- ..+..||--|||+||-.+++
T Consensus 32 ~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 32 AWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 6999999999999999999 9999986432 23468999999999877665
No 45
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.22 E-value=0.011 Score=47.16 Aligned_cols=52 Identities=21% Similarity=0.399 Sum_probs=43.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 007908 465 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 520 (585)
Q Consensus 465 RKkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~ 520 (585)
+.....||++|.+...+|+.+||. +|..|... .+..||..||..-|-...|.
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~---~v~~Kt~~~~v~fYY~wKkt 57 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKE---LLPNKETGELITFYYYWKKT 57 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHH---SCTTSCHHHHHHHHHHHHCS
T ss_pred CcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHH---HcCCCcHHHHHHHHhcccCC
Confidence 345679999999999999999999 89999831 36899999999887655443
No 46
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=95.75 E-value=0.0052 Score=61.77 Aligned_cols=31 Identities=45% Similarity=0.811 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCchhhhhhhc
Q 007908 469 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAF 499 (585)
Q Consensus 469 r~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f 499 (585)
-.|+.+|+..|+.||-+||.|+|..|+.+..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~Dp~ 199 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDDPF 199 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCTT
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcCcc
Confidence 4699999999999999999999999997644
No 47
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.57 E-value=0.029 Score=45.69 Aligned_cols=54 Identities=15% Similarity=0.326 Sum_probs=45.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 007908 464 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 521 (585)
Q Consensus 464 rRKkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~s 521 (585)
-|+....||++|.....+|+.+||. +|..|... .++.||..||..-|-...|..
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~---~v~~Kt~~~~v~fYY~wKkt~ 57 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYGK-DFNDIRQD---FLPWKSLTSIIEYYYMWKTTD 57 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHT---TCSSSCHHHHHHHHHHHHTCC
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHH---HcCCCCHHHHHHHHHhhcCCc
Confidence 3567889999999999999999999 89999831 368999999999887555543
No 48
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=94.98 E-value=0.0078 Score=50.57 Aligned_cols=44 Identities=23% Similarity=0.434 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHHHhhCCC---CchhhhhhhcccCCCCChhhHHHHHH
Q 007908 468 HRAWTLSEVMKLVEGVSKYGAG---RWSEIKRLAFASYSYRTSVDLKDKWR 515 (585)
Q Consensus 468 rr~WT~EEveaLv~GVeKyG~G---~W~~Ik~~~f~~f~~RT~VDLKDKWR 515 (585)
-..||.+|..+|..++.+|+.+ +|..|+ ..+++||..+++..+.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA----~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVA----QYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTG----GGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHH----HHcCCCCHHHHHHHHH
Confidence 4579999999999999999976 999998 4578999999987654
No 49
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=94.74 E-value=0.028 Score=60.62 Aligned_cols=49 Identities=24% Similarity=0.453 Sum_probs=42.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhc
Q 007908 466 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 519 (585)
Q Consensus 466 Kkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK 519 (585)
+..-+||.+|.+.+++||.+||. +|..|.. .+..||..+||.-|.+..+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~----~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISD----VIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHH----HHSSCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH----HhCCCCHHHHHHHHHHHHH
Confidence 56789999999999999999998 9999984 3578999999998865443
No 50
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=94.70 E-value=0.016 Score=59.35 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=45.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhCC---CCchhhhhh-------hccc-CCCCChhhHHHHHHHhhcc
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGA---GRWSEIKRL-------AFAS-YSYRTSVDLKDKWRNLLKA 520 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~---G~W~~Ik~~-------~f~~-f~~RT~VDLKDKWRNLlK~ 520 (585)
+.+.||.+|+..|+-++.+||. |.|..|+.. .|+. |..||+.+|..|-..|++.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~ 275 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITL 275 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 3458999999999999999999 999999742 1222 3699999999999999874
No 51
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.85 E-value=0.05 Score=50.94 Aligned_cols=52 Identities=19% Similarity=0.328 Sum_probs=41.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhC--CCCchhhhhhhcccCCCCChhhHHHHHHHhh
Q 007908 465 RKHHRAWTLSEVMKLVEGVSKYG--AGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 518 (585)
Q Consensus 465 RKkrr~WT~EEveaLv~GVeKyG--~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLl 518 (585)
|.....||..|...|++++.+|| .++|..|..+ ..|.++|..++++=++.++
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~d--a~L~~Ks~~~v~~y~~~f~ 57 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARD--AELVDKSETDLRRLGELVH 57 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHH--TTCTTSCHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHH--hccCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999 6899999965 3478999999998555444
No 52
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=93.04 E-value=0.068 Score=56.12 Aligned_cols=53 Identities=21% Similarity=0.302 Sum_probs=45.0
Q ss_pred CCCCCHHHHHHHHHHHHhhCC---CCchhhhhh-----h--ccc-CCCCChhhHHHHHHHhhcc
Q 007908 468 HRAWTLSEVMKLVEGVSKYGA---GRWSEIKRL-----A--FAS-YSYRTSVDLKDKWRNLLKA 520 (585)
Q Consensus 468 rr~WT~EEveaLv~GVeKyG~---G~W~~Ik~~-----~--f~~-f~~RT~VDLKDKWRNLlK~ 520 (585)
.+.||.+||..|+-++.+||. |+|..|+.. . |+- |..||+..|..|-..|++.
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~ 291 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQC 291 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 458999999999999999999 999999753 1 222 3689999999999999875
No 53
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.86 E-value=0.22 Score=40.71 Aligned_cols=54 Identities=24% Similarity=0.277 Sum_probs=40.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCC--CchhhhhhhcccCCCCChhhHHH---HHHHhhc
Q 007908 464 RRKHHRAWTLSEVMKLVEGVSKYGAG--RWSEIKRLAFASYSYRTSVDLKD---KWRNLLK 519 (585)
Q Consensus 464 rRKkrr~WT~EEveaLv~GVeKyG~G--~W~~Ik~~~f~~f~~RT~VDLKD---KWRNLlK 519 (585)
.+|+|-.||+|.-+.++++|+.+|.. .|+.|+..- ...+.|..+++- |||..++
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M--~v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLM--NVDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHH--CCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHc--CCCCCCHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999953 267887531 246889999984 4565443
No 54
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=92.59 E-value=0.1 Score=44.77 Aligned_cols=48 Identities=13% Similarity=0.090 Sum_probs=40.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHH
Q 007908 464 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRN 516 (585)
Q Consensus 464 rRKkrr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRN 516 (585)
.|+....||++|-+.+.+++..||. +|..|. ..++.||..+|-.=+-.
T Consensus 39 ~r~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia----~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 39 DRQVMNMWSEQEKETFREKFMQHPK-NFGLIA----SFLERKTVAECVLYYYL 86 (94)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHSTT-CHHHHH----HTCTTCCHHHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHHcCC-CHHHHH----HHcCCCCHHHHHHHHhc
Confidence 3466889999999999999999998 999996 34789999999876543
No 55
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=88.55 E-value=0.35 Score=42.28 Aligned_cols=51 Identities=20% Similarity=0.348 Sum_probs=44.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC--CCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 007908 466 KHHRAWTLSEVMKLVEGVSKYGA--GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 520 (585)
Q Consensus 466 Kkrr~WT~EEveaLv~GVeKyG~--G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~ 520 (585)
.+--.||.|||..++...++-|. -.|+.|. ..+.+|+.-++++|++.|++.
T Consensus 31 e~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA----~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 31 EKVVLWTREADRVILTMCQEQGAQPHTFSVIS----QQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHH----HHHSSCCHHHHHHHHHHHHHH
T ss_pred CEEEEeccccCHHHHHHHHhcCCChhHHHHHH----HHHccCCHHHHHHHHHHHHHH
Confidence 35678999999999999999997 5788887 346799999999999999984
No 56
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=85.23 E-value=0.18 Score=42.08 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=42.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhCC--CCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 007908 467 HHRAWTLSEVMKLVEGVSKYGA--GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 520 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG~--G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~ 520 (585)
.--.||.|||..++...++-|. -.|+.|. ..+ +|+.-++++|++.|++.
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA----~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLA----AKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 4567999999999999999997 5788886 345 89999999999999875
No 57
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=84.25 E-value=1.4 Score=44.40 Aligned_cols=50 Identities=14% Similarity=0.190 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhC--CCCchhhhhhhcccCCCCChhhHHHHHHHhh
Q 007908 467 HHRAWTLSEVMKLVEGVSKYG--AGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 518 (585)
Q Consensus 467 krr~WT~EEveaLv~GVeKyG--~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLl 518 (585)
+++.||..|...|++++.+|| .++|..|..+ ..|..+....++.=+..|+
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~d--A~L~~ks~~~i~~~~~~li 53 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIAD--GTLPVKSFEKYGETYDEMM 53 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHT--TSSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh--cccccCCHHHHHHHHHHHH
Confidence 467899999999999999999 4899999865 4578888888886655443
No 58
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=81.78 E-value=1.1 Score=44.85 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=23.3
Q ss_pred CCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 007908 489 GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 520 (585)
Q Consensus 489 G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~ 520 (585)
+.|..|.. .|++||....||||+.+++.
T Consensus 172 ~~fk~ia~----~~P~HT~~SWRdRyrKfl~~ 199 (246)
T 1ign_A 172 EFFKHFAE----EHAAHTENAWRDRFRKFLLA 199 (246)
T ss_dssp THHHHHHH----HTTTSCHHHHHHHHHHTHHH
T ss_pred HHHHHHHH----HCCCCChhhHHHHHHHHHhh
Confidence 36888873 47899999999999998864
No 59
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=56.31 E-value=2.3 Score=46.01 Aligned_cols=47 Identities=15% Similarity=0.269 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 007908 469 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 520 (585)
Q Consensus 469 r~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK~ 520 (585)
..||.+|...+.+|+.+||. +|..|.. .+++||..+|-.-|....|.
T Consensus 190 d~WT~eE~~lFe~al~~yGK-dF~~I~~----~lp~Ksv~e~V~yYY~WKKt 236 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGK-TFHRIQQ----MLPDKSIASLVKFYYSWKKT 236 (482)
T ss_dssp ----------------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCc-cHHHHHH----HcCCCCHHHHHHHhcccccc
Confidence 47999999999999999999 8999973 47899999988665444443
No 60
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=50.23 E-value=16 Score=37.35 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCchhhhhhhcccCCCCChhhHHHHHHHhhc
Q 007908 468 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 519 (585)
Q Consensus 468 rr~WT~EEveaLv~GVeKyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK 519 (585)
-..||..+-.+++.|+++||...|..|+. .+.+.|..+.+.=...+..
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~----ev~~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAK----DVEGKTPEEVIEYNAVFWE 157 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTT----SSTTCCHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHH----HhcCCCHHHHHHHHHHHHH
Confidence 55699999999999999999999999983 3568999999766555543
No 61
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=20.02 E-value=39 Score=30.87 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=33.7
Q ss_pred hhHHHHHHhh--hhhhhhhhccCCCCCCCceeee------cCCCcccccccccccccccc
Q 007908 63 ESIEEMLTKA--KQEESHLLACGSPDHSSTYVLV------DGQCSDQHDTLRGIDEKLQS 114 (585)
Q Consensus 63 e~~~~~~~~~--~~~~~l~~~~~~p~~s~~~~~~------~s~cs~~hd~~~~~~~~~~~ 114 (585)
|.++++|+.+ .++.+.+.-||.++-. |+.+ =.+|+++|-.|..+ -+|.|
T Consensus 10 e~~~~~l~~l~~~p~N~~CaDCg~~~P~--WaS~n~GvfiC~~CsgiHR~LG~~-s~VrS 66 (140)
T 2olm_A 10 EKHLKMLRDMTGLPHNRKCFDCDQRGPT--YVNMTVGSFVCTSCSGSLRGLNPP-HRVKS 66 (140)
T ss_dssp HHHHHHHHHHHTSGGGGSCTTTCSSCCC--EEETTTTEEECHHHHHHHTTSSSC-CCEEE
T ss_pred HHHHHHHHHHhcCcCCCcCCCCCCCCCC--ceeeccCEEEchhccchhccCCCc-ceeee
Confidence 3445555544 3578899999999765 5544 46899999998753 45554
Done!