BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007909
(585 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 55/129 (42%), Gaps = 7/129 (5%)
Query: 43 NKRGDVIQCSHYVPILNPDGKPLPCVIYCHGNSGCRADASEAAIILLPSNITVFTLDFSG 102
N G + C ++ P G P + HG E A +L+ ++ VF D G
Sbjct: 41 NADGQYLFCRYW----KPTGTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVG 96
Query: 103 SGLSGGEHVTLGWNE--KDDLKAVVDYLRADGNVSMIGLWGRSMGAVTSLLYGAEDPS-I 159
G S GE + + D+ VD ++ D + L G SMG ++L AE P
Sbjct: 97 HGQSEGERMVVSDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHF 156
Query: 160 AGMVLDSPF 168
AGMVL SP
Sbjct: 157 AGMVLISPL 165
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 63/149 (42%), Gaps = 10/149 (6%)
Query: 43 NKRGDVIQCSHYVPILNPDGKPLPCVIYCHGNSGCRADASEAAIILLPSNITVFTLDFSG 102
N G + C ++ P G P + HG E A +L+ ++ VF D G
Sbjct: 42 NADGQYLFCRYW----KPTGTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVG 97
Query: 103 SGLSGGEHVTLGWNE--KDDLKAVVDYLRADGNVSMIGLWGRSMGAVTSLLYGAEDPS-I 159
G S GE + + D+ VD ++ D + L G SMG ++L AE P
Sbjct: 98 HGQSEGERMVVSDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHF 157
Query: 160 AGMVLDSPFSDLVDLMMELVDTYKIRLPK 188
AGMVL SP LV E T+K+ K
Sbjct: 158 AGMVLISP---LVLANPESATTFKVLAAK 183
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 9/130 (6%)
Query: 43 NKRGDVIQCSHYVPILNPDGKPLPCVIYCHGNSGCRADASEAAIILLPSNITVFTLDFSG 102
N G + C ++ P G P + HG E A +L+ ++ VF D G
Sbjct: 24 NADGQYLFCRYWAP----TGTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVG 79
Query: 103 SGLSGGEHVTLG---WNEKDDLKAVVDYLRADGNVSMIGLWGRSMGAVTSLLYGAEDPS- 158
G S GE + + +D L+ VD ++ D + L G SMG ++L AE P
Sbjct: 80 HGQSEGERMVVSDFHVFVRDVLQH-VDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGH 138
Query: 159 IAGMVLDSPF 168
AGMVL SP
Sbjct: 139 FAGMVLISPL 148
>pdb|2FUK|A Chain A, Crystal Structure Of Xc6422 From Xanthomonas Campestris: A
Member Of AB SERINE HYDROLASE WITHOUT LID AT 1.6
Resolution
Length = 220
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 42/93 (45%), Gaps = 10/93 (10%)
Query: 69 IYCH-----GNSGCRADASEAAIILLPSNITVFTLDFSGSGLSGG--EHVTLGWNEKDDL 121
I CH G S + AA L ITV +F G S G +H G E+DDL
Sbjct: 41 IVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAGSFDH---GDGEQDDL 97
Query: 122 KAVVDYLRADGNVSMIGLWGRSMGAVTSLLYGA 154
+AV +++RA + L G S GA SL A
Sbjct: 98 RAVAEWVRAQRPTDTLWLAGFSFGAYVSLRAAA 130
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 57/149 (38%), Gaps = 10/149 (6%)
Query: 43 NKRGDVIQCSHYVPILNPDGKPLPCVIYCHGNSGCRADASEAAIILLPSNITVFTLDFSG 102
N G + C ++ P G P + HG E A L ++ VF D G
Sbjct: 41 NADGQYLFCRYW----KPTGTPKALIFVSHGAGEHSGRYEELARXLXGLDLLVFAHDHVG 96
Query: 103 SGLSGGEHVTLGWNE--KDDLKAVVDYLRADGNVSMIGLWGRSMGAVTSLLYGAEDPS-I 159
G S GE + D+ VD + D + L G S G ++L AE P
Sbjct: 97 HGQSEGERXVVSDFHVFVRDVLQHVDSXQKDYPGLPVFLLGHSXGGAIAILTAAERPGHF 156
Query: 160 AGMVLDSPFSDLVDLMMELVDTYKIRLPK 188
AG VL SP LV E T+K+ K
Sbjct: 157 AGXVLISP---LVLANPESATTFKVLAAK 182
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 11/120 (9%)
Query: 47 DVIQCSHYV--PILNPDGKPLPCVIYCHGNSGCRADASEAAIILLPSNITVFTL--DFSG 102
D I+ + Y+ P NP+ PL C+I HG +G + A+ + I V TL D G
Sbjct: 9 DGIKLNAYLDMPKNNPEKCPL-CII-IHGFTGHSEERHIVAVQETLNEIGVATLRADMYG 66
Query: 103 SGLSGG---EHVTLGWNEKDDLKAVVDYLRADGNVSMIGLWGRSMGAVTSLLYGAEDPSI 159
G S G +H W ++ AVVDY + V+ I + G S G ++ +L A + I
Sbjct: 67 HGKSDGKFEDHTLFKW--LTNILAVVDYAKKLDFVTDIYMAGHSQGGLSVMLAAAMERDI 124
>pdb|2JBW|A Chain A, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase.
pdb|2JBW|B Chain B, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase.
pdb|2JBW|C Chain C, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase.
pdb|2JBW|D Chain D, Crystal Structure Of The 2,6-Dihydroxy-Pseudo-Oxynicotine
Hydrolase
Length = 386
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 88/216 (40%), Gaps = 21/216 (9%)
Query: 54 YVPILNPDG-KPLPCVIYCHGNSGCRADASEAAIILLPSNITVFTLDFSGSGLSGGEHVT 112
YV I P+G P P VI G + ++ + ++L T D G G E+
Sbjct: 142 YVRI--PEGPGPHPAVIXLGGLESTKEESFQXENLVLDRGXATATFDGPGQG-EXFEYKR 198
Query: 113 LGWNEKDDLKAVVDYLRADGNVS--MIGLWGRSMGAVTSLLYGAEDPSIAGMVLDSPFSD 170
+ + + AVVD L + IG+ GRS+G +L A +P +A + FSD
Sbjct: 199 IAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEPRLAACISWGGFSD 258
Query: 171 LVDLMMELVDTYKIRLPKFTVKFAIQYMRKA-IQKKAKFDI-TDLNTIKVAKSCFVPVLF 228
L D + + P K + +Y+ K ++A+ + L T V P
Sbjct: 259 L--------DYWDLETP--LTKESWKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYI 308
Query: 229 GHAVEDDFINPHHSDRIFEAYAGD--KNIIKFEGDH 262
H V D+ + D + E + +++ +GDH
Sbjct: 309 LHGVHDE-VPLSFVDTVLELVPAEHLNLVVEKDGDH 343
>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
pdb|3CZM|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
Length = 326
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 19/84 (22%)
Query: 12 PRAEYSPEHDLLDQEFMLKGKWYQRKDIEV----KNKRGDVIQC-----SHYVPILNP-- 60
P A Y + +EF+ KGK + K E+ K G++++ ++Y P L+
Sbjct: 192 PLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRLLGQGSAYYAPALSAIT 251
Query: 61 --------DGKPLPCVIYCHGNSG 76
+ + LPC +YC G G
Sbjct: 252 MAQAFLKDEKRVLPCSVYCQGEYG 275
>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOV|B Chain B, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOW|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
pdb|1SOW|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
Length = 328
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 19/84 (22%)
Query: 12 PRAEYSPEHDLLDQEFMLKGKWYQRKDIEV----KNKRGDVIQC-----SHYVPILNP-- 60
P A Y + +EF+ KGK + K E+ K G++++ ++Y P L+
Sbjct: 192 PLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRLLGQGSAYYAPALSAIT 251
Query: 61 --------DGKPLPCVIYCHGNSG 76
+ + LPC +YC G G
Sbjct: 252 MAQAFLKDEKRVLPCSVYCQGEYG 275
>pdb|2G7R|A Chain A, X-Ray Structure Of The Death Domain Of The Human Mucosa
Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|2G7R|B Chain B, X-Ray Structure Of The Death Domain Of The Human Mucosa
Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
Length = 117
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 12/64 (18%)
Query: 21 DLLDQEFMLKGKWYQRKDIEVKNKRG-------DVIQCSHYVPILNPDGKPLPCVIYCHG 73
+LLDQ +G W R+ E+ RG D+ QCS + +L P+G P C++ G
Sbjct: 34 ELLDQAPEGRG-W--RRLAELAGSRGRLRLSCLDLEQCS--LKVLEPEGSPSLCLLKLMG 88
Query: 74 NSGC 77
GC
Sbjct: 89 EKGC 92
>pdb|1LTM|A Chain A, Accelerated X-ray Structure Elucidation Of A 36 Kda
Muramidase/transglycosylase Using Warp
Length = 320
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 88 LLPSNITVFTLDFSGSGLSGGEHVTLGWNEKDDLKAVVDYLRADGNV 134
+PS+ + +DFSG G H+ L W+ D + +V +Y +A G V
Sbjct: 185 FMPSSYKQYAVDFSGDG-----HINL-WDPVDAIGSVANYFKAHGWV 225
>pdb|1QUS|A Chain A, 1.7 A Resolution Structure Of The Soluble Lytic
Transglycosylase Slt35 From Escherichia Coli
pdb|1QUT|A Chain A, The Soluble Lytic Transglycosylase Slt35 From Escherichia
Coli In Complex With N-Acetylglucosamine
pdb|1QDR|A Chain A, 2.1 A Resolution Structure Of Escherichia Coli Lytic
Transglycosylase Slt35
pdb|1QDT|A Chain A, 2.1 A Resolution Structure Of Escherichia Coli Lytic
Transglycoyslase Slt35 In Complex With Calcium
pdb|1D0K|A Chain A, The Escherichia Coli Lytic Transglycosylase Slt35 In
Complex With Two Murodipeptides
(Glcnac-Murnac-L-Ala-D-Glu)
pdb|1D0L|A Chain A, The Escherichia Coli Lytic Transglycosylase Slt35 In
Complex With Bulgecin A
pdb|1D0M|A Chain A, The Escherichia Coli Lytic Transglycosylase Slt35 In
Complex With Bulgecin A And (Glcnac)2
Length = 322
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 88 LLPSNITVFTLDFSGSGLSGGEHVTLGWNEKDDLKAVVDYLRADGNV 134
+PS+ + +DFSG G H+ L W+ D + +V +Y +A G V
Sbjct: 187 FMPSSYKQYAVDFSGDG-----HINL-WDPVDAIGSVANYFKAHGWV 227
>pdb|2D9Q|B Chain B, Crystal Structure Of The Human Gcsf-Receptor Signaling
Complex
Length = 313
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 402 QLDDLAGFPSNVEEEERMFMEAVIMSLKDLEMRHPEVEQPTSVAADSFKSSGQGATN--- 458
Q++ AG+P + M SL PE PTS SFKS G T
Sbjct: 90 QVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPETHLPTSFTLKSFKSRGNCQTQGDS 149
Query: 459 --DCSTTD---HC 466
DC D HC
Sbjct: 150 ILDCVPKDGQSHC 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,702,501
Number of Sequences: 62578
Number of extensions: 673911
Number of successful extensions: 1547
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1545
Number of HSP's gapped (non-prelim): 16
length of query: 585
length of database: 14,973,337
effective HSP length: 104
effective length of query: 481
effective length of database: 8,465,225
effective search space: 4071773225
effective search space used: 4071773225
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)