Query 007910
Match_columns 585
No_of_seqs 163 out of 1967
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 13:31:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007910.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007910hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 1.6E-30 5.6E-35 281.7 33.3 445 13-555 8-478 (491)
2 2xut_A Proton/peptide symporte 100.0 1.1E-30 3.8E-35 285.5 23.3 482 14-555 8-509 (524)
3 1pw4_A Glycerol-3-phosphate tr 99.9 1.3E-26 4.4E-31 247.5 25.0 399 17-550 27-435 (451)
4 4gc0_A D-xylose-proton symport 99.9 1.3E-26 4.5E-31 250.8 19.4 415 53-565 54-479 (491)
5 3o7q_A L-fucose-proton symport 99.9 1.9E-24 6.4E-29 230.0 32.9 357 14-510 22-409 (438)
6 2gfp_A EMRD, multidrug resista 99.9 1.3E-22 4.6E-27 211.5 16.8 166 22-219 4-169 (375)
7 2cfq_A Lactose permease; trans 99.8 8.7E-22 3E-26 209.2 9.9 389 19-551 8-402 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 4.3E-12 1.5E-16 134.7 16.1 178 18-224 252-433 (451)
9 3o7q_A L-fucose-proton symport 99.3 2.3E-11 8E-16 128.6 18.4 167 18-218 258-426 (438)
10 2cfq_A Lactose permease; trans 99.3 3.6E-11 1.2E-15 127.1 14.0 165 28-223 230-398 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.1 4.8E-10 1.6E-14 120.6 12.2 184 20-226 285-473 (491)
12 4gc0_A D-xylose-proton symport 99.0 6.4E-09 2.2E-13 111.6 19.5 183 18-227 276-465 (491)
13 2gfp_A EMRD, multidrug resista 98.7 6E-09 2E-13 107.8 5.1 162 19-210 200-362 (375)
14 2xut_A Proton/peptide symporte 98.1 1.1E-05 3.8E-10 87.0 12.4 119 384-546 74-196 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.98 E-value=1.6e-30 Score=281.70 Aligned_cols=445 Identities=17% Similarity=0.238 Sum_probs=294.4
Q ss_pred cCCCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHH-----hCCChhhHHHHHHHHHHHHHHHhhHhHHhhhc-ccCchH
Q 007910 13 KKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILE-----YHMSGPEGANVLFLWGAISNFLPIIGASISDS-FLGRFR 86 (585)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-----l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~-~~Grr~ 86 (585)
.++++|..+.+++..+++.+++|++...++.|+.++ +|++..+.+++.+.+.++..++.+++|+++|| + |||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~ 86 (491)
T 4aps_A 8 FFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARP 86 (491)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchH
Confidence 355677888888999999999999999999999998 99999999999999999999999999999999 7 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCC
Q 007910 87 VIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNP 166 (585)
Q Consensus 87 ~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 166 (585)
++..+.++..++.+++.++. +.+.++++|++.|+|.+...++..++++|++|+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-- 141 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPF-----------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD-- 141 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCC-----------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT--
T ss_pred HHHHHHHHHHHHHHHHHHhh-----------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc--
Confidence 99999999999998888755 67789999999999999999999999999999821
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccC---CCCC-cchhHH
Q 007910 167 NNERILQTFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPK---ANKV-LFTGFG 242 (585)
Q Consensus 167 ~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~-~~~~~~ 242 (585)
+.|++++++++.+.++|..++|.+++++.+..||++.|++.++..+++.++.++..++...++ +... ..++..
T Consensus 142 ---~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
T 4aps_A 142 ---RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVK 218 (491)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHH
T ss_pred ---ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhH
Confidence 347889999999999999999999999999899999999987766666655544433322111 1110 111110
Q ss_pred HHHH--------------HHHhhcCCCCCCCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCcccc
Q 007910 243 QVIS--------------AAWKNRHLPLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLC 308 (585)
Q Consensus 243 ~~i~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 308 (585)
+... .....++... ++.........+...... . ...|+..
T Consensus 219 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~----~---~~~~~~~ 272 (491)
T 4aps_A 219 PLLVKVSLAVAGFIAIIVVMNLVGWNSL-------------------PAYINLLTIVAIAIPVFY----F---AWMISSV 272 (491)
T ss_dssp HHHHHCCCCCHHHHHHHHHHHHHSSCCT-------------------THHHHHHHHHHHHHHHHH----H---HHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccc-------------------ccchhhhhHHHHHHHHHH----H---HHHhhcc
Confidence 0000 0000000000 000000000000000000 0 0000000
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cch-hhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhh
Q 007910 309 TVKQVEELKAIIKVLPIWSSGIMIAVTISQ-YTF-PQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVP 386 (585)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 386 (585)
. ....++++......++.....++..+.+ .+. ..+.....+... ...+.....+.+..++..++.+ +
T Consensus 273 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~----~ 341 (491)
T 4aps_A 273 K-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSW------FPVSWFQSLNPLFIMLYTPFFA----W 341 (491)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSS------SCSGGGTTHHHHHHHHHHHHHH----H
T ss_pred c-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCc------cCHHHHhccchHHHHHHHHHHH----H
Confidence 0 0011223333344455555666666666 333 222222222211 3456667777778888777754 4
Q ss_pred ccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhh
Q 007910 387 LLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIG 466 (585)
Q Consensus 387 l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~ 466 (585)
+.+|++||+ ......+.+++.+.+++++++...... .+ + ....+..++++.+++.++++++..+.
T Consensus 342 l~~r~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----~--~~~~~~~~~~~~~~l~g~~~~~~~~~ 406 (491)
T 4aps_A 342 LWTAWKKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGAL-------YG----T--SGKVSPLWLVGSWALVILGEMLISPV 406 (491)
T ss_dssp HHHHTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHH-------CC----C--CTTCCTHHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHhccC--CCchHHHHHHHHHHHHHHHHHHHHHHh-------cC----C--CCCccHHHHHHHHHHHHHHHHHHhHH
Confidence 566777663 455667778888888887776654411 00 0 11235566778889999999999999
Q ss_pred hHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHH
Q 007910 467 QIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFI 546 (585)
Q Consensus 467 ~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~ 546 (585)
.+.++.+.+|++.||+++|+.+...++|+.+++.+.+.+.+ .++...|++++++.+++.++.+
T Consensus 407 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~ 469 (491)
T 4aps_A 407 GLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-----------------KSEVAYFSYFGLGSVVLGIVLV 469 (491)
T ss_dssp HHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-----------------SSTTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------ccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988665432 1245678888888888887777
Q ss_pred HHhcccCcc
Q 007910 547 ACSWAYGSC 555 (585)
Q Consensus 547 ~~~~~~~~~ 555 (585)
...++.+++
T Consensus 470 ~~~~~~~~~ 478 (491)
T 4aps_A 470 FLSKRIQGL 478 (491)
T ss_dssp HC-------
T ss_pred HHHHHHHHH
Confidence 766655443
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=1.1e-30 Score=285.50 Aligned_cols=482 Identities=20% Similarity=0.311 Sum_probs=286.2
Q ss_pred CCCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhC------CChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHH
Q 007910 14 KGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYH------MSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRV 87 (585)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~------~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~ 87 (585)
++++|..+.+++..++..+++|++...++.|+.+++| ++..+.+++.+.+.++..++.+++|+++||++|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~ 87 (524)
T 2xut_A 8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT 87 (524)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 3455677788889999999999999999999999999 9999999999999999999999999999993399999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCc
Q 007910 88 IALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPN 167 (585)
Q Consensus 88 l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 167 (585)
+.++.++..++.+++.++. .+.+.+++.|++.|++.+...++..++++|.+|++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r-- 143 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIFE----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK-- 143 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTS----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT--
T ss_pred HHHHHHHHHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch--
Confidence 9999999999988887643 1567789999999999999999999999999998322
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHH
Q 007910 168 NERILQTFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISA 247 (585)
Q Consensus 168 ~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 247 (585)
..+...+++++.+.++|..++|.+++++.+..||++.|++.++..++..++.++..++...+++++++..+..+.+..
T Consensus 144 --~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (524)
T 2xut_A 144 --SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRS 221 (524)
T ss_dssp --THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC---------------
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHH
Confidence 233455666999999999999999999998889999999887776666555544444332222222111111111111
Q ss_pred HHhhcCCCCCCCcccccccccCC---CcCCCCchhhhhhhhhhcc--ccccccccCCCCCCCcc-------ccchhhHHH
Q 007910 248 AWKNRHLPLPPTDADRWYYYKGS---KLTAPTEKLRFLNRACVVQ--NREKELDLDGKAIEPWK-------LCTVKQVEE 315 (585)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 315 (585)
..++++...+. ........... ......+....+....+.. ..|. ....+|+ .++.+..++
T Consensus 222 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 294 (524)
T 2xut_A 222 ALLTKVEGKGN-IGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGF------VGAGASLQLERARKSHPDAAVDG 294 (524)
T ss_dssp -----CTTHHH-HHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHH------HHTGGGTHHHHSCCSCCSSSSTT
T ss_pred HHhhhhcccCc-cchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcc------cccchhhHHhhhhccccHhHHHH
Confidence 11111100000 00000000000 0000000000000000000 0000 0000110 000001122
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc-cchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCC
Q 007910 316 LKAIIKVLPIWSSGIMIAVTISQ-YTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNR 394 (585)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r 394 (585)
.|+.+....++.....++..+.+ .+.+..+...++... + .+.+.+...+.+..++..++.+++..+..+|.++|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (524)
T 2xut_A 295 VRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ----W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK 369 (524)
T ss_dssp TTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS----S-SCHHHHHTTSGGGHHHHGGGTTTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe----e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC
Confidence 23344444454455556666666 444344433332211 0 13445556667777888888877666666776655
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhc
Q 007910 395 PRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQ 474 (585)
Q Consensus 395 ~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~ 474 (585)
.+..+++.+|+.+.+++++.+...... .+.....+.+++++.+++.++++++..+..++++.+.
T Consensus 370 ---~~~~~~~~~g~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 433 (524)
T 2xut_A 370 ---LTALRKMGAGIAITGLSWIVVGTIQLM-------------MDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQ 433 (524)
T ss_dssp ----CCHHHHHTHHHHHHHHHHTTTTTTTT-------------TTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred ---CChHHHHHHHHHHHHHHHHHHHHHHHH-------------hcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566677788888887777665443200 0000123555677788999999999999999999999
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccc-CcccchhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 007910 475 FPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVST-NVNRAHYDYYYWILCILSVVNFFYFIACSWAYG 553 (585)
Q Consensus 475 ~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~-~~~~~~~~~~f~~~~~i~vv~~~~~~~~~~~~~ 553 (585)
+|++.||+++|+++...++|+.+++.+.+.+.+.++ .+|.+. +.+. ....|++.+++.+++.++++++.++++
T Consensus 434 ~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (524)
T 2xut_A 434 APKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQ 507 (524)
T ss_dssp CCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC-------
T ss_pred CcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----ccccccccccc--cccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999888653221 123211 0111 122377788888888877777766665
Q ss_pred cc
Q 007910 554 SC 555 (585)
Q Consensus 554 ~~ 555 (585)
++
T Consensus 508 ~~ 509 (524)
T 2xut_A 508 MQ 509 (524)
T ss_dssp --
T ss_pred cc
Confidence 44
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.95 E-value=1.3e-26 Score=247.54 Aligned_cols=399 Identities=12% Similarity=-0.033 Sum_probs=250.2
Q ss_pred cchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHH
Q 007910 17 LRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTAL 96 (585)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 96 (585)
|+.....++..++..+..+.....++ ++.+++ .+..+.+++.+++.++..++.+++|+++||+ |||++++++.++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 44455555566666666555555544 445667 9999999999999999999999999999996 99999999999999
Q ss_pred HHHHHHHH----hhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhh
Q 007910 97 LGMILLWL----TAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERIL 172 (585)
Q Consensus 97 ~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r 172 (585)
++.+++++ +. +++.++++|++.|++.+...+...++++|.+|+ ++|
T Consensus 104 ~~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~r 153 (451)
T 1pw4_A 104 AVMLFMGFVPWATS-----------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KER 153 (451)
T ss_dssp HHHHHHHHCHHHHS-----------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------THH
T ss_pred HHHHHHHhhhhccc-----------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc-------hhh
Confidence 99999988 65 667799999999999999999999999999998 889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhh
Q 007910 173 QTFFNWYYASVGLSYMASITLIVYIQDKAG-WVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKN 251 (585)
Q Consensus 173 ~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 251 (585)
++++++.+.+.++|..++|.+++++.+..| ||+.|++.+++.++..++.++..++.+......+. ++
T Consensus 154 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------- 221 (451)
T 1pw4_A 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-EE----------- 221 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-TT-----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-hh-----------
Confidence 999999999999999999999999888888 99999988776665555444433322111100000 00
Q ss_pred cCCCCCCCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHH-HHHH
Q 007910 252 RHLPLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIW-SSGI 330 (585)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 330 (585)
.+ +. ..++ ..++ .+ ....++....+..-..+.+....... ....
T Consensus 222 ~~----~~------~~~~-----~~~~-----------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (451)
T 1pw4_A 222 YK----ND------YPDD-----YNEK-----------AE---------QELTAKQIFMQYVLPNKLLWYIAIANVFVYL 266 (451)
T ss_dssp TC----CC--------------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred hc----cc------cccc-----chhh-----------hh---------cccccccchHHHHHcCHHHHHHHHHHHHHHH
Confidence 00 00 0000 0000 00 00000000000000001221111111 1111
Q ss_pred HHHHhhcccchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccc--cCCCCCCCchHHHHHHH
Q 007910 331 MIAVTISQYTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKF--TNRPRGLSYRQRIGIGL 408 (585)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~--~~r~~~~~~~~~~~~g~ 408 (585)
.+.......+.+..+..+.+. ...+.+.....+..++...+ ...+.+|+ ++| +.+.++.
T Consensus 267 ~~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~----~g~l~~~~~~~~~-------~~~~~~~ 327 (451)
T 1pw4_A 267 LRYGILDWSPTYLKEVKHFAL--------DKSSWAYFLYEYAGIPGTLL----CGWMSDKVFRGNR-------GATGVFF 327 (451)
T ss_dssp HHHHHHHHHHHHBTTBSCCCH--------HHHHHHHHHHHHHHHHHHHH----HHHHHHHTSTTCH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCH--------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcCCc-------hhHHHHH
Confidence 111111111111111111111 01122333334444444444 34455665 443 5555555
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHH
Q 007910 409 AISC-VAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALL 487 (585)
Q Consensus 409 ~l~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~ 487 (585)
.+.. ++++.+.... ..+.+......++.+++.....+....++.+..|++.||+++|+.
T Consensus 328 ~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 387 (451)
T 1pw4_A 328 MTLVTIATIVYWMNP--------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFT 387 (451)
T ss_dssp HHHHHHHHHHTTSCC--------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHH
Confidence 4444 4443332211 113444566677778888888888889999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhc
Q 007910 488 SLGMAV-GNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIACSW 550 (585)
Q Consensus 488 ~~~~~i-g~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~~~~~ 550 (585)
+....+ |..+++.+.+.+.+.. ++...|++.+++.+++.++.+...+
T Consensus 388 ~~~~~~~g~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 388 GLFGYLGGSVAASAIVGYTVDFF----------------GWDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSS----------------CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999 9999999998876433 2467788888888887776665543
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.94 E-value=1.3e-26 Score=250.78 Aligned_cols=415 Identities=10% Similarity=0.028 Sum_probs=227.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhH
Q 007910 53 GPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLG 132 (585)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (585)
..+.+++.+++.++..++++++|+++||+ |||++++++.+++.++.++++++........+.. ........+.+
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~-----~~~~~~a~~~~ 127 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDN-----TVPVYLAGYVP 127 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSS-----SCCGGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchh-----HHHHHHhhhHH
Confidence 45667888999999999999999999996 9999999999999999999986431110000000 00000123788
Q ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc--------cchh
Q 007910 133 FLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQDK--------AGWV 204 (585)
Q Consensus 133 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~--------~g~~ 204 (585)
.++++|+++|+|.|+..+..+.+++|..|+ ++|++..++.+.+..+|.++++.++..+... .+||
T Consensus 128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~-------~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (491)
T 4gc0_A 128 EFVIYRIIGGIGVGLASMLSPMYIAELAPA-------HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWR 200 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCG-------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-------HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhH
Confidence 999999999999999999999999999999 8999999999999999999998887766543 2466
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcc--ccccCCCCCcchhHHHHHHHHHhhcCCCCCCCcccccccccCCCcCCCCchhhhh
Q 007910 205 VGFGVPVGLMLFSTVMFLLGSSL--YIKPKANKVLFTGFGQVISAAWKNRHLPLPPTDADRWYYYKGSKLTAPTEKLRFL 282 (585)
Q Consensus 205 ~~f~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (585)
+.+.+..+..++.++..+..++. +...+.+. ++..+.+.....+.. . .++..+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~---~~a~~~l~~~~~~~~--------------~------~~~~~~~- 256 (491)
T 4gc0_A 201 YMFASECIPALLFLMLLYTVPESPRWLMSRGKQ---EQAEGILRKIMGNTL--------------A------TQAVQEI- 256 (491)
T ss_dssp HHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCH---HHHHHHHHHHHHHHH--------------H------HHHHHHH-
T ss_pred HHhhhhhhhhhhhhhhhhcCCCChHHHHHcCch---hHHHHhHHHhcCCch--------------h------HHHHHHH-
Confidence 66655554444443333322221 11111111 110111100000000 0 0000000
Q ss_pred hhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhcccccccCCcccccCC
Q 007910 283 NRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQYTFPQLQAKSMDRHIFSEKLKIPP 362 (585)
Q Consensus 283 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (585)
.......++. .. .......++........... .+..++. . ...........+. .....
T Consensus 257 -~~~~~~~~~~---------~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~-~~~~~~~~~~~~~--~~~~~ 314 (491)
T 4gc0_A 257 -KHSLDHGRKT---------GG-----RLLMFGVGVIVIGVMLSIFQ--QFVGINV--V-LYYAPEVFKTLGA--STDIA 314 (491)
T ss_dssp -HHHHHHHHHH---------TT-----HHHHSCCTHHHHHHHHHHHH--HHTCHHH--H-HHHHHHHHHHSSC--CHHHH
T ss_pred -HHHHHhhhhh---------hh-----HHHHhcccHHHHHHHHHHHH--HHhhhhH--H-HhcchHHHHhcCC--Cccch
Confidence 0000000000 00 00000001111111110000 0000000 0 0000000001110 00001
Q ss_pred CcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccc
Q 007910 363 GSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVV 442 (585)
Q Consensus 363 ~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (585)
........+..++... +...+.+|+||| +.+..+...++++++.++..... .
T Consensus 315 ~~~~~~~~~~~~~~~~----~~~~l~dr~Grr-------~~~~~~~~~~~~~~~~l~~~~~~-----------------~ 366 (491)
T 4gc0_A 315 LLQTIIVGVINLTFTV----LAIMTVDKFGRK-------PLQIIGALGMAIGMFSLGTAFYT-----------------Q 366 (491)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHCSH-------HHHHHHHHHHHHHHHHHHHHHHT-----------------T
T ss_pred hhHHHHHHHHHHHHHH----HHHHHHHhhcCc-------chhccchHHHHHHHHHHHHHHhc-----------------c
Confidence 1111122222222222 245567788877 66777777777776666544310 0
Q ss_pred cchhhhHHHHHHHHHHHH-HHHhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccC
Q 007910 443 ALTAMWLVPQNCLIGLAE-AFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTN 521 (585)
Q Consensus 443 ~~~~~~~i~~~~l~g~g~-~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~ 521 (585)
..++. .+...++...+. ....+..+.+..|.+|.+.|++++|+.+..+++++.+++.+.+.+.... |..
T Consensus 367 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-------~~~-- 436 (491)
T 4gc0_A 367 APGIV-ALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-------WLV-- 436 (491)
T ss_dssp CCHHH-HHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-------HHH--
T ss_pred cchHH-HHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH--
Confidence 11222 222222222222 2334566788889999999999999999999999999998887754221 100
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHhcccCcccCCcccchhh
Q 007910 522 VNRAHYDYYYWILCILSVVNFFYFIACSWAYGSCEDIKVWDEGE 565 (585)
Q Consensus 522 ~~~~~~~~~f~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (585)
...+....|++++++++++.++.+++.+|+|+|+.||.++..+
T Consensus 437 -~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 437 -AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp -HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred -hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 0012245688899999999999999999999997666554443
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=1.9e-24 Score=230.03 Aligned_cols=357 Identities=8% Similarity=0.021 Sum_probs=229.0
Q ss_pred CCCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHH
Q 007910 14 KGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTF 93 (585)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~ 93 (585)
+++++....+++..++..+..+.. ..+..++.+++|++..+.+++.+++.++..++.++.|+++||+ |||++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLN-DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 334444455555555555555544 4445567889999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHH---HHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchh
Q 007910 94 TALLGMILL---WLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNER 170 (585)
Q Consensus 94 ~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 170 (585)
+.+++.+++ .++. +++.++++|++.|++.+...+...++++|.+|+ +
T Consensus 100 ~~~~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~ 149 (438)
T 3o7q_A 100 LYALGAALFWPAAEIM-----------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-------S 149 (438)
T ss_dssp HHHHHHHHHHHHHHTT-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS-------T
T ss_pred HHHHHHHHHHhccccc-----------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCc-------h
Confidence 999999888 5444 788999999999999999999999999999999 8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh-cccc-------------------------hhHHHHHHHHHHHHHHHHHHHh
Q 007910 171 ILQTFFNWYYASVGLSYMASITLIVYIQ-DKAG-------------------------WVVGFGVPVGLMLFSTVMFLLG 224 (585)
Q Consensus 171 ~r~~~~~~~~~~~~ig~~~g~~~~~~l~-~~~g-------------------------~~~~f~~~~~~~~i~~~~~~~~ 224 (585)
+|++.+++++.+.++|..++|.+++++. +..+ ||+.|++.+...++..+++++.
T Consensus 150 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 229 (438)
T 3o7q_A 150 SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT 229 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999988 5554 8999977665555444443332
Q ss_pred CccccccCCCCCcchhHHHHHHHHHhhcCCCCCCCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCC
Q 007910 225 SSLYIKPKANKVLFTGFGQVISAAWKNRHLPLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEP 304 (585)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 304 (585)
+. ++.++++++ .++ ....+.++ ..+.
T Consensus 230 ~~--p~~~~~~~~-------------------~~~--------------~~~~~~~~---~~~~---------------- 255 (438)
T 3o7q_A 230 KF--PALQSDNHS-------------------DAK--------------QGSFSASL---SRLA---------------- 255 (438)
T ss_dssp CC--CCCTTTCCC-------------------CSS--------------TTSHHHHH---HHHT----------------
T ss_pred cC--Ccccccccc-------------------ccc--------------ccchhhhH---HHHH----------------
Confidence 11 111000000 000 00000000 0000
Q ss_pred ccccchhhHHHHHHHHHHH-HHHHHHHHHHHhhcc-cchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhh
Q 007910 305 WKLCTVKQVEELKAIIKVL-PIWSSGIMIAVTISQ-YTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDR 382 (585)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 382 (585)
+ + +.+.... ..+............ +.+...+..+.+.. ..+.......+..++..++
T Consensus 256 ----~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--------~~~~~~~~~~~~~~~~~~~--- 314 (438)
T 3o7q_A 256 ----R-----I-RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAG--------FAANYLTGTMVCFFIGRFT--- 314 (438)
T ss_dssp ----T-----C-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHH--------HHHHHHHHHHHHHHHHHHH---
T ss_pred ----h-----C-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchh--------HHHHHHHHHHHHHHHHHHH---
Confidence 0 0 1111111 111111111111111 22201111111111 1122223333334444333
Q ss_pred hhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHH
Q 007910 383 VVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAF 462 (585)
Q Consensus 383 ~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~ 462 (585)
..++.+|+++| +.+.++..+.+++++++.... +. +.+...++.+++...
T Consensus 315 -~g~l~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~----------------------~~-~~~~~~~~~g~~~~~ 363 (438)
T 3o7q_A 315 -GTWLISRFAPH-------KVLAAYALIAMALCLISAFAG----------------------GH-VGLIALTLCSAFMSI 363 (438)
T ss_dssp -HHHHHHHSCHH-------HHHHHHHHHHHHHHHHHHHCC----------------------HH-HHHHHHHHHHHHHTT
T ss_pred -HHHHHHHhcch-------HHHHHHHHHHHHHHHHHHHcC----------------------Cc-HHHHHHHHHHHHHHH
Confidence 34556676554 667777776666655544322 22 233445777888888
Q ss_pred HhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 007910 463 NAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTG 510 (585)
Q Consensus 463 ~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~ 510 (585)
..|..+.+..+..|++ ++.+.++.. .+.+++.+++.+.+.+.+..|
T Consensus 364 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 364 QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 8999999989999977 899998877 677999999999998876543
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.89 E-value=1.3e-22 Score=211.52 Aligned_cols=166 Identities=14% Similarity=0.095 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHH
Q 007910 22 FIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMIL 101 (585)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~ 101 (585)
.+++..++..+........++. +.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHH
Confidence 4455566666666555555554 4678999999999999999999999999999999996 9999999999999999999
Q ss_pred HHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHH
Q 007910 102 LWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYA 181 (585)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 181 (585)
..+++ +.+.+++.|++.|++.+...+...+++.|.+|+ ++|++.++..+.
T Consensus 82 ~~~~~-----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 131 (375)
T 2gfp_A 82 AVTTS-----------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYER-------TQLRHANSLLNM 131 (375)
T ss_dssp HHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------SSCCSHHHHHHH
T ss_pred HHHhc-----------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH-------HHHHHHHHHHHH
Confidence 98876 788899999999999999999999999999998 778899999999
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHH
Q 007910 182 SVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTV 219 (585)
Q Consensus 182 ~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~ 219 (585)
..++|..++|.+++++.+..+||+.|++.++..++..+
T Consensus 132 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 132 GILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888999999877665554433
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.85 E-value=8.7e-22 Score=209.17 Aligned_cols=389 Identities=9% Similarity=-0.013 Sum_probs=215.6
Q ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHH
Q 007910 19 TMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLG 98 (585)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g 98 (585)
..+......++..+++..+.++++.|+++++|+++.+.+++.+.+.++..++++++|+++||+ ||||+++++.+++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~ 86 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHH
Confidence 344455555666666666778899999989999999999999999999999999999999996 9999999888776553
Q ss_pred HHHH---HHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHH
Q 007910 99 MILL---WLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTF 175 (585)
Q Consensus 99 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 175 (585)
.... .+.... ...++.++.+.+++.+...+...+...+..++ ..++|+..
T Consensus 87 ~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~ 139 (417)
T 2cfq_A 87 FAPFFIFIFGPLL----------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK-----VSRRSNFE 139 (417)
T ss_dssp HHHHHHHTHHHHH----------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHH-----HHHHHTCC
T ss_pred HHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-----hhhhcccc
Confidence 2211 111100 00123445555555555444444444444432 01345556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhcCCC
Q 007910 176 FNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHLP 255 (585)
Q Consensus 176 ~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 255 (585)
++..+...++|..++|.+++++.+ .+|++.|++.++..++..+..+...++ +++... .
T Consensus 140 ~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~--------------~--- 197 (417)
T 2cfq_A 140 FGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSSAT--------------V--- 197 (417)
T ss_dssp HHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCSSC--------------S---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----cccccc--------------c---
Confidence 667667789999999999999876 589999887655433322222111111 100000 0
Q ss_pred CCCCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007910 256 LPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVT 335 (585)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (585)
.+.. + + ..++.+..+...+ ++ + +...............+..
T Consensus 198 -~~~~-------~-~----~~~~~~~~~~~~~--------------------~~-----~-~~~~~~~~~~~~~~~~~~~ 238 (417)
T 2cfq_A 198 -ANAV-------G-A----NHSAFSLKLALEL--------------------FR-----Q-PKLWFLSLYVIGVSCTYDV 238 (417)
T ss_dssp -SSSS-------S-S----CCCCCCHHHHHHH--------------------TT-----C-HHHHHHHHHHHHHHHHHHH
T ss_pred -cccc-------c-c----ccccccHHHHHHH--------------------hc-----C-CchhhHHHHHHHHHHHHHH
Confidence 0000 0 0 0000000000000 00 0 1111111111111112222
Q ss_pred hcc--cchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHH
Q 007910 336 ISQ--YTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCV 413 (585)
Q Consensus 336 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i 413 (585)
+.+ +.+. .. ..+....+ ....+....++.+..++...+ ..++.||+++| +.+.++..+.++
T Consensus 239 ~~~~~~~~~-~~--~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~----~g~l~dr~g~~-------~~l~~~~~~~~~ 301 (417)
T 2cfq_A 239 FDQQFANFF-TS--FFATGEQG---TRVFGYVTTMGELLNASIMFF----APLIINRIGGK-------NALLLAGTIMSV 301 (417)
T ss_dssp HHHHHHHHH-HH--TSSSHHHH---THHHHHHHHHHHHHHHHHHHH----HHHHHHHHCHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHH-HH--HHhccCCC---hhHHHHHHHHHHHHHHHHHHH----HHHHHHHhcHH-------HHHHHHHHHHHH
Confidence 222 2221 11 11100000 000112222333333333333 45566777665 666667666666
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHH-HHHHHH
Q 007910 414 AMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVAL-LSLGMA 492 (585)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~ 492 (585)
+++...... +...+++..++.+++.....+....++.+..|++.||++.++ ++..++
T Consensus 302 ~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~ 359 (417)
T 2cfq_A 302 RIIGSSFAT----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQ 359 (417)
T ss_dssp HHHHHTTCC----------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHh
Confidence 544432211 233344445556666666667778899999999999999998 588888
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 007910 493 VGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIACSWA 551 (585)
Q Consensus 493 ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~~~~~~ 551 (585)
+|+.+++.+.+.+.+.. ++...|.+.+++.+++.++.+...++
T Consensus 360 lg~~~gp~l~G~l~~~~----------------g~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 360 LAMIFMSVLAGNMYESI----------------GFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHTHHHHTHHHHS----------------HHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHhhhhHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999988765322 24667888888888877765554443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.38 E-value=4.3e-12 Score=134.73 Aligned_cols=178 Identities=15% Similarity=0.148 Sum_probs=148.3
Q ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhccc--CchHHHHHHHHHH
Q 007910 18 RTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFL--GRFRVIALGTFTA 95 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~--Grr~~l~~~~~~~ 95 (585)
+..+..++..++..+.++++..+++.|+.+.+|+++.+.+++.....++..++.++.|+++|| + |||+.+.++.++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 445666677778888888889999999988899999999999999999999999999999999 7 9999988777766
Q ss_pred H-HHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhH
Q 007910 96 L-LGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQT 174 (585)
Q Consensus 96 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 174 (585)
. ++.+++.+.. ..+.+.+++..++.|++.+...+...+++.|.+|+ +.|++
T Consensus 331 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~ 382 (451)
T 1pw4_A 331 VTIATIVYWMNP---------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-------KAAGT 382 (451)
T ss_dssp HHHHHHHTTSCC---------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-------THHHH
T ss_pred HHHHHHHHHHhc---------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch-------hhhhh
Confidence 6 4544443321 11456677778889999888888889999999999 88999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 007910 175 FFNWYYASVGL-SYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLG 224 (585)
Q Consensus 175 ~~~~~~~~~~i-g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 224 (585)
++++++...++ |..++|.+.+++.+..||+..|++.+++.+++.++.++.
T Consensus 383 ~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 383 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999988877776666655543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.34 E-value=2.3e-11 Score=128.58 Aligned_cols=167 Identities=13% Similarity=0.001 Sum_probs=135.3
Q ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHH-HHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHH
Q 007910 18 RTMPFIIANEAFEKVAGVGLHANMIFY-LILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTAL 96 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~y-l~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 96 (585)
+..+..++..++....++++..+++.| +++.+|++..+++.+...+.++..++.+++|+++||+ |||+++.++.++.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 445556666677777778888999999 8888899999999999999999999999999999996 99999999998888
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHH
Q 007910 97 LGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFF 176 (585)
Q Consensus 97 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 176 (585)
++.++..+.. +.+. +...++.|++.+...|...++..|.+|+ + ++++.
T Consensus 337 ~~~~~~~~~~-----------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~-~~~~~ 384 (438)
T 3o7q_A 337 ALCLISAFAG-----------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQ-------D-TKYGS 384 (438)
T ss_dssp HHHHHHHHCC-----------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGG-------G-HHHHH
T ss_pred HHHHHHHHcC-----------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhccc-------c-ccchh
Confidence 8877776643 3333 3444788899999999999999999987 4 55656
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHH
Q 007910 177 NWYYASVGLSYMASITLIVYIQDKAG-WVVGFGVPVGLMLFST 218 (585)
Q Consensus 177 ~~~~~~~~ig~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~i~~ 218 (585)
++.. ...+|..++|.+.+++.+..| ++..|++.+++.++..
T Consensus 385 ~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 385 SFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 6555 567999999999999999888 9999887655544433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.25 E-value=3.6e-11 Score=127.13 Aligned_cols=165 Identities=10% Similarity=-0.030 Sum_probs=122.2
Q ss_pred HHHHHHhHhHHHHHHHHHHHHhCCC---hhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHH
Q 007910 28 AFEKVAGVGLHANMIFYLILEYHMS---GPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWL 104 (585)
Q Consensus 28 ~~~~~~~~~~~~~~~~yl~~~l~~s---~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~ 104 (585)
+.....++.....++.|+.+.++.. ....+.......+...++.+++|+++||+ |||+++..+.++.+++.++..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~ 308 (417)
T 2cfq_A 230 IGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSF 308 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445556788887666532 33446666666777888899999999996 9999999888887776655543
Q ss_pred hhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHH-HHHHH
Q 007910 105 TAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNW-YYASV 183 (585)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~ 183 (585)
.. +.+.+++..++.+++.+...+....++.|.+|+ +.|+++.+. ++...
T Consensus 309 ~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~ 358 (417)
T 2cfq_A 309 AT-----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-------RFSATIYLVCFCFFK 358 (417)
T ss_dssp CC-----------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH-------HHHHHHHHHHHTTTH
T ss_pred hc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHH
Confidence 22 445566666677777766667778899999999 899999888 47777
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007910 184 GLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLL 223 (585)
Q Consensus 184 ~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 223 (585)
++|..++|.++|++.+..|++..|.+.+++.+++.++.+.
T Consensus 359 ~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 359 QLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999998888888888777666666555433
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.07 E-value=4.8e-10 Score=120.59 Aligned_cols=184 Identities=10% Similarity=0.007 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHH-----HHHHH
Q 007910 20 MPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIA-----LGTFT 94 (585)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~-----~~~~~ 94 (585)
.+.+++..++....++.....++.|+.+.++.+..+.+.+.....+...++.++.|+++||+ |||+... .+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 44445455555666666777888999888888877888888889999999999999999996 9987655 66666
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhH
Q 007910 95 ALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQT 174 (585)
Q Consensus 95 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 174 (585)
.+++.+++.+...... .....+.+.+++..++.|++.+...+...+++.|.+|+ +.|++
T Consensus 364 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~-------~~~g~ 422 (491)
T 4aps_A 364 AGLSFLLMAIPGALYG--------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK-------AFNSQ 422 (491)
T ss_dssp HHHHHTTTHHHHHHCC--------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT-------TCSSS
T ss_pred HHHHHHHHHHHHHhcC--------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-------HHHHH
Confidence 6666665554321100 00012456677788899999999999999999999999 78899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCc
Q 007910 175 FFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSS 226 (585)
Q Consensus 175 ~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 226 (585)
+.++++...++|..+++.+.+++.+ .++...|.+.+...++..++.+...+
T Consensus 423 ~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 423 MMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp STHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988876 46777777766666655555554444
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.04 E-value=6.4e-09 Score=111.65 Aligned_cols=183 Identities=12% Similarity=0.073 Sum_probs=123.9
Q ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHH
Q 007910 18 RTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALL 97 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 97 (585)
+.....+...++..+..+........++.+..+.+............+...++.++++++.||+ |||+.++.+.....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAI 354 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHH
Confidence 3344444444444444444444455566777888888888888888889999999999999996 999999999988888
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHH-HHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHH
Q 007910 98 GMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLF-SSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFF 176 (585)
Q Consensus 98 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 176 (585)
+.+.+........ .....++ ......+++. ...|....+.+|.+|+ +.|+++.
T Consensus 355 ~~~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt-------~~R~~~~ 408 (491)
T 4gc0_A 355 GMFSLGTAFYTQA------------------PGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPN-------AIRGKAL 408 (491)
T ss_dssp HHHHHHHHHHTTC------------------CHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCT-------TTHHHHH
T ss_pred HHHHHHHHHhccc------------------chHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCH-------hHHHHHH
Confidence 7776665431111 1222222 2222223333 3346777899999999 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc------ccchhHHHHHHHHHHHHHHHHHHHhCcc
Q 007910 177 NWYYASVGLSYMASITLIVYIQD------KAGWVVGFGVPVGLMLFSTVMFLLGSSL 227 (585)
Q Consensus 177 ~~~~~~~~ig~~~g~~~~~~l~~------~~g~~~~f~~~~~~~~i~~~~~~~~~~~ 227 (585)
++.....++|+.+++.+.+.+.+ ..++...|++.+++.+++.++.++..|+
T Consensus 409 g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 409 AIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 99999999999998887766543 2345567777666666666665555554
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.72 E-value=6e-09 Score=107.79 Aligned_cols=162 Identities=10% Similarity=-0.009 Sum_probs=122.6
Q ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHH-HHH
Q 007910 19 TMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFT-ALL 97 (585)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~-~~~ 97 (585)
..+..++..++....++....+++.|+++.+|.++.+.+.+.....++..++.++.|+++||+ |++ +..+... ...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~~ 276 (375)
T 2gfp_A 200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLLA 276 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHH
Confidence 344555666777777788888888898888999999999999999999999999999999996 872 2233332 222
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHH
Q 007910 98 GMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFN 177 (585)
Q Consensus 98 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 177 (585)
+........ .+ ..+.+.+++..++.|++.+...+...++..|.+| ++|+++.+
T Consensus 277 ~~~~~~~~~-~~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p--------~~~g~~~g 329 (375)
T 2gfp_A 277 GLLMWIPDW-FG------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP--------FLAGTAGA 329 (375)
T ss_dssp SSSSSHHHH-HH------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH--------HHHHHHHH
T ss_pred HHHHHHHhh-hc------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC--------cccchHHH
Confidence 222111110 00 0145566777888999999999999999999986 46899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH
Q 007910 178 WYYASVGLSYMASITLIVYIQDKAGWVVGFGVP 210 (585)
Q Consensus 178 ~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~ 210 (585)
..+...++|..++|.+.+.+.+..+|+..+.+.
T Consensus 330 ~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 330 LVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 999999999999999999998877787777653
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.13 E-value=1.1e-05 Score=87.04 Aligned_cols=119 Identities=19% Similarity=0.139 Sum_probs=87.1
Q ss_pred hhhccccc-cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHH
Q 007910 384 VVPLLSKF-TNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAF 462 (585)
Q Consensus 384 ~~~l~~r~-~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~ 462 (585)
..++.||+ |+| +.+.++..+.+++.+.+.... .+...+++..++.|++.+.
T Consensus 74 ~G~l~dr~~g~r-------~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~ 125 (524)
T 2xut_A 74 GGWIADRFFGKY-------NTILWLSLIYCVGHAFLAIFE---------------------HSVQGFYTGLFLIALGSGG 125 (524)
T ss_dssp HHHHHTTSSCSH-------HHHHHHHHHHHHHHHHHHHTS---------------------SCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcch-------HHHHHHHHHHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHhccc
Confidence 45566776 665 777788877777766554321 1445577778899999999
Q ss_pred HhhhhHHHhhhcCCcchhhHHHHH---HHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHH
Q 007910 463 NAIGQIEFYYSQFPKTMSSIGVAL---LSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSV 539 (585)
Q Consensus 463 ~~~~~~~~~~~~~P~~~rg~~~g~---~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~v 539 (585)
..+....++.+.+|++.|++..+. ++...++|..+++.+.+.+.+.. +++..|++.+++.+
T Consensus 126 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~----------------g~~~~f~~~~~~~~ 189 (524)
T 2xut_A 126 IKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF----------------GAAVAFGIPGVLMF 189 (524)
T ss_dssp THHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS----------------CHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------------cHHHHHHHHHHHHH
Confidence 999999999999999999877766 78888889889888876654321 24677887777766
Q ss_pred HHHHHHH
Q 007910 540 VNFFYFI 546 (585)
Q Consensus 540 v~~~~~~ 546 (585)
++++.++
T Consensus 190 ~~~~~~~ 196 (524)
T 2xut_A 190 VATVFFW 196 (524)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
Done!