Query 007910
Match_columns 585
No_of_seqs 163 out of 1967
Neff 8.6
Searched_HMMs 13730
Date Mon Mar 25 13:31:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007910.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007910hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 99.9 6.9E-26 5E-30 238.2 27.8 160 39-226 45-205 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 99.9 8.4E-23 6.1E-27 210.0 24.3 397 18-553 7-404 (417)
3 d1pv7a_ f.38.1.2 (A:) Lactose 99.2 8.7E-12 6.3E-16 126.4 10.8 146 50-226 255-401 (417)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 99.2 5E-11 3.7E-15 123.2 16.6 179 18-222 249-428 (447)
5 d2qkwa1 a.8.8.1 (A:29-129) Avi 3.6 2E+02 0.015 19.6 1.5 26 467-492 25-50 (101)
6 d2iuba2 f.17.3.1 (A:286-349) M 2.4 3.6E+02 0.026 17.2 1.8 14 531-544 43-56 (64)
7 d3proc1 d.52.1.1 (C:6-85) Alph 2.4 9E+02 0.066 16.3 5.6 40 42-81 4-43 (80)
8 d3b60a2 f.37.1.1 (A:10-328) Mu 2.1 1E+03 0.074 18.9 5.4 68 14-81 12-79 (319)
9 d2vv5a3 f.34.1.1 (A:27-112) Me 2.1 9.3E+02 0.068 15.7 6.6 47 25-71 39-85 (86)
10 d3b45a1 f.51.1.1 (A:91-270) Gl 2.0 1E+03 0.075 17.8 4.7 40 65-104 62-101 (180)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.94 E-value=6.9e-26 Score=238.23 Aligned_cols=160 Identities=13% Similarity=0.055 Sum_probs=136.1
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 007910 39 ANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNP 118 (585)
Q Consensus 39 ~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 118 (585)
+.+..++. ++|+|.++.+++.+++.++..++.+++|+++||+ |||+++.++.++.+++.++++++.....
T Consensus 45 ~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~-------- 114 (447)
T d1pw4a_ 45 ALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWATS-------- 114 (447)
T ss_dssp HHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHHS--------
T ss_pred HHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhhh--------
Confidence 44556665 5899999999999999999999999999999997 9999999999999999988877542222
Q ss_pred CcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007910 119 FIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQ 198 (585)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~ 198 (585)
+.+.+++.|++.|++.|...+...++++|.+|+ ++|++.+++++.+.++|..++|.+++.+.
T Consensus 115 -----------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~i~~~~~~~~~ 176 (447)
T d1pw4a_ 115 -----------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KERGGIVSVWNCAHNVGGGIPPLLFLLGM 176 (447)
T ss_dssp -----------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------THHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHh-------hcccccccccccccchhhhhhhhhhhhHh
Confidence 567899999999999999999999999999999 89999999999999999999999888766
Q ss_pred cc-cchhHHHHHHHHHHHHHHHHHHHhCc
Q 007910 199 DK-AGWVVGFGVPVGLMLFSTVMFLLGSS 226 (585)
Q Consensus 199 ~~-~g~~~~f~~~~~~~~i~~~~~~~~~~ 226 (585)
.. .+|++.|++.+.+.++..++.+...+
T Consensus 177 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 205 (447)
T d1pw4a_ 177 AWFNDWHAALYMPAFCAILVALFAFAMMR 205 (447)
T ss_dssp HHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhcccccchhhhhhHHHHHHHHHHhcc
Confidence 54 47999998877766655555554444
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.90 E-value=8.4e-23 Score=209.99 Aligned_cols=397 Identities=10% Similarity=-0.003 Sum_probs=230.8
Q ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHH
Q 007910 18 RTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALL 97 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 97 (585)
|..+.+.+..++..+++....+.++.|+++++|+|+.+.+++.+++.++..++.++.|+++||+ ||||+++++.++..+
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~ 85 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 3556666677777777777788899999999999999999999999999999999999999997 999999999998888
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHH
Q 007910 98 GMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFN 177 (585)
Q Consensus 98 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 177 (585)
+..+..+..+.+. .....+..+.+.+.+.+...........+..+++ . +++....+
T Consensus 86 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~ 141 (417)
T d1pv7a_ 86 MFAPFFIFIFGPL-------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----S-RRSNFEFG 141 (417)
T ss_dssp THHHHHHHTHHHH-------------------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHH----H-HHHSCCHH
T ss_pred HHHHHHHhhhhhh-------------------HHHHHHHHHHHhhhcccccccchhhcccccccch----h-hhhHHHHH
Confidence 8877776542111 1222334444444444444444443333333321 1 34455566
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhcCCCCC
Q 007910 178 WYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHLPLP 257 (585)
Q Consensus 178 ~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 257 (585)
........+..++|.+++.+.+. +|+..+........+..++.++..++.+..+..++.. +...
T Consensus 142 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~--- 205 (417)
T d1pv7a_ 142 RARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAV------------GANH--- 205 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHH------------HSCC---
T ss_pred HHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhh------------hhhc---
Confidence 67777788889999998888774 4555555544444443343333333211111110000 0000
Q ss_pred CCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007910 258 PTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTIS 337 (585)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (585)
..+. ..+.. +.....+....................
T Consensus 206 -----------------~~~~--~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (417)
T d1pv7a_ 206 -----------------SAFS--LKLAL-------------------------ELFRQPKLWFLSLYVIGVSCTYDVFDQ 241 (417)
T ss_dssp -----------------CCCC--HHHHH-------------------------HHTTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------cccc--ccccc-------------------------cccccccccchhhhhHHHHHHHHhhhc
Confidence 0000 00000 000000000001111111111111111
Q ss_pred ccchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 007910 338 QYTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAV 417 (585)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~ 417 (585)
.... . ......... ...... ........+...+...+..++.+|.+++ +.+.++..+.+++.+.
T Consensus 242 ~~~~-~-~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~r~~~~-------~~~~~~~~~~~~~~~~ 305 (417)
T d1pv7a_ 242 QFAN-F-FTSFFATGE------QGTRVF-GYVTTMGELLNASIMFFAPLIINRIGGK-------NALLLAGTIMSVRIIG 305 (417)
T ss_dssp HHHH-H-HTTSSSCHH------HHHHHH-HHHHHHHHHHHHHHHTTHHHHHHHHCHH-------HHHHHHHHHHHHHHHH
T ss_pred cccc-c-ccccccccc------cchhhh-cccccccccccccchhhhhhhhcccccc-------cchhhhHHHHHHhhhc
Confidence 1000 0 000000000 000111 1111122222223233344555565444 7777787777777666
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHH-HHHHHHHHH
Q 007910 418 AALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALL-SLGMAVGNL 496 (585)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~ig~~ 496 (585)
..... +.+..++..++.+++.+...+....++.+.+|++.||++.|+. ++...+|..
T Consensus 306 ~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 363 (417)
T d1pv7a_ 306 SSFAT----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI 363 (417)
T ss_dssp HHTCC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHH
T ss_pred ccccc----------------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHH
Confidence 54432 4556677788889999999999999999999999999999974 577789999
Q ss_pred HHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 007910 497 VGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIACSWAYG 553 (585)
Q Consensus 497 ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~~~~~~~~ 553 (585)
+++.+.+.+.+..| ++..|++.+++.++..++..+..++.+
T Consensus 364 i~~~~~G~l~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (417)
T d1pv7a_ 364 FMSVLAGNMYESIG----------------FQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHHHHHHC----------------HHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHHC----------------HHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999988775443 467788888888888877776665443
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.24 E-value=8.7e-12 Score=126.40 Aligned_cols=146 Identities=12% Similarity=-0.022 Sum_probs=122.0
Q ss_pred CCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcc
Q 007910 50 HMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPR 129 (585)
Q Consensus 50 ~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (585)
+.+....+.......++..++..+.|++.||+ |||+++.++.++..++.++..+..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 310 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT----------------------- 310 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC-----------------------
T ss_pred ccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc-----------------------
Confidence 34455667777788888889999999999996 999999999999888888877654
Q ss_pred hhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHH-HHHHHHHHHHHHHHHHHhhcccchhHHHH
Q 007910 130 QLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWY-YASVGLSYMASITLIVYIQDKAGWVVGFG 208 (585)
Q Consensus 130 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~ig~~~g~~~~~~l~~~~g~~~~f~ 208 (585)
+.+.+++..++.|++.+...+...+++.|.+|+ +.|++.++.. .....+|..++|.+.|++.+.+||+..|+
T Consensus 311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~ 383 (417)
T d1pv7a_ 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-------RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL 383 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCG-------GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Confidence 677788888999999999999999999999999 8999999975 45667999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHhCc
Q 007910 209 VPVGLMLFSTVMFLLGSS 226 (585)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~ 226 (585)
+.+++.++..++.++..+
T Consensus 384 ~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 384 VLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 877766655555544443
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.24 E-value=5e-11 Score=123.22 Aligned_cols=179 Identities=16% Similarity=0.083 Sum_probs=137.9
Q ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHH
Q 007910 18 RTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALL 97 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 97 (585)
+..+......++.....++...+.+.|+.+.++++..+.+.......+...++.+++|+++||+ +|++..........+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 327 (447)
T d1pw4a_ 249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTL 327 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHHH
T ss_pred chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHHH
Confidence 4455566677777778888889999999999999999999999999999999999999999996 887655544444333
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHH
Q 007910 98 GMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFN 177 (585)
Q Consensus 98 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 177 (585)
........... ...+.+..++..++.|++.++..+....+..|.+|+ +.|+++.+
T Consensus 328 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g 382 (447)
T d1pw4a_ 328 VTIATIVYWMN------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-------KAAGTAAG 382 (447)
T ss_dssp HHHHHHHTTSC------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-------THHHHHHH
T ss_pred HHHHHHHHHhc------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHHHH
Confidence 33332221100 112566677777888998888888999999999999 88999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 007910 178 WYYASVGL-SYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFL 222 (585)
Q Consensus 178 ~~~~~~~i-g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~ 222 (585)
+.+...++ |..++|.+.+++.+..||+..|++.+.+.+++.++..
T Consensus 383 ~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 383 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 98888877 5677899999999999999998877665555544443
No 5
>d2qkwa1 a.8.8.1 (A:29-129) Avirulence protein AvrPto {Pseudomonas syringae [TaxId: 317]}
Probab=3.58 E-value=2e+02 Score=19.58 Aligned_cols=26 Identities=31% Similarity=0.226 Sum_probs=20.8
Q ss_pred hHHHhhhcCCcchhhHHHHHHHHHHH
Q 007910 467 QIEFYYSQFPKTMSSIGVALLSLGMA 492 (585)
Q Consensus 467 ~~~~~~~~~P~~~rg~~~g~~~~~~~ 492 (585)
.-+++.+++|.+.|..+..++.-.+.
T Consensus 25 qhefissqap~slr~~ynnlyshtqr 50 (101)
T d2qkwa1 25 QHEFVSSQAPQSLRNRYNNLYSHTQR 50 (101)
T ss_dssp HHTTTSSSCCSSGGGHHHHHHHHHHH
T ss_pred HHHHHhhcCcHHHHHHHhhHHHHHHh
Confidence 34678899999999999998875443
No 6
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=2.44 E-value=3.6e+02 Score=17.24 Aligned_cols=14 Identities=14% Similarity=0.365 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 007910 531 YWILCILSVVNFFY 544 (585)
Q Consensus 531 f~~~~~i~vv~~~~ 544 (585)
+++.++...++++.
T Consensus 43 ~~~~~~~~~~~~~~ 56 (64)
T d2iuba2 43 PVVLAVMGVIAVIM 56 (64)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 7
>d3proc1 d.52.1.1 (C:6-85) Alpha-lytic protease prodomain {Lysobacter enzymogenes [TaxId: 69]}
Probab=2.37 E-value=9e+02 Score=16.34 Aligned_cols=40 Identities=10% Similarity=-0.015 Sum_probs=25.8
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcc
Q 007910 42 IFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSF 81 (585)
Q Consensus 42 ~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~ 81 (585)
..-|+++||+++.|+.-=...=.-..-+-.-+-.-+.|+|
T Consensus 4 ~~AmqRDLgLt~~qa~~RLa~E~~A~~~~~~lr~~lg~~f 43 (80)
T d3proc1 4 KFAMQRDLGIFPTQLPQYLQTEKLARTQAAAIEREFGAQF 43 (80)
T ss_dssp HHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGE
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4457889999998887665555555555555555555554
No 8
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=2.15 E-value=1e+03 Score=18.93 Aligned_cols=68 Identities=9% Similarity=-0.215 Sum_probs=0.0
Q ss_pred CCCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcc
Q 007910 14 KGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSF 81 (585)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~ 81 (585)
+++++.+...++...+..+........+...+.+.++-++...-.......++..+...+..++.+++
T Consensus 12 ~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~ 79 (319)
T d3b60a2 12 APFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYC 79 (319)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhhhhhhhhhh
No 9
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=2.08 E-value=9.3e+02 Score=15.72 Aligned_cols=47 Identities=11% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHh
Q 007910 25 ANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLP 71 (585)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~ 71 (585)
...++.+...|.+........-+.+|++.+..-...++..++-.++.
T Consensus 39 ~~~~i~~~~~~~i~~i~~~~~L~~~Gi~~t~l~a~~G~~gvaiGfa~ 85 (86)
T d2vv5a3 39 VADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLAL 85 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhc
No 10
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Probab=1.96 E-value=1e+03 Score=17.85 Aligned_cols=40 Identities=15% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHH
Q 007910 65 AISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWL 104 (585)
Q Consensus 65 ~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~ 104 (585)
+..++....-|..-.|..|++|.+.+-.+...++.+...+
T Consensus 62 ~~N~~~l~~~G~~lE~~~G~~~~~~~~~~~~~~g~l~~~~ 101 (180)
T d3b45a1 62 LFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQK 101 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchhheeeeeHHHHHHHHHHHH
Done!