BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007911
(585 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O5Z|A Chain A, Crystal Structure Of Folylpolyglutamate Synthase (Tm0166)
From Thermotoga Maritima At 2.10 A Resolution
Length = 442
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 104/334 (31%), Positives = 163/334 (48%), Gaps = 53/334 (15%)
Query: 57 LQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDV 116
L+R+SM L LG + E K IH+ GT GKGS IL G+R G + SPHL
Sbjct: 35 LERISMLLSKLG--NPHLEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTF 92
Query: 117 RERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVA 176
RER R+N I+E+ + + +L E E++ P F+ +T +AF F + VD+A
Sbjct: 93 RERIRLNEEYISEEDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIA 152
Query: 177 IIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVP 236
++EVGLGG D+TNV+ P+ + ++ DH + LG T+ IA+ K+GI K ++P T
Sbjct: 153 VLEVGLGGRLDATNVVF-PLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGE 211
Query: 237 QLSEAMSVLQDRALE---LMVPLEVAAPLDIEKLK---------------RLELSLSGDH 278
+ EA+ V++D A + M ++ + ++ LK L L+++G H
Sbjct: 212 RKREALKVMEDVARKKSSRMYVIDKDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNGPH 271
Query: 279 QLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVR-GLSTAHLLGRAQIVYDIS 337
Q+ NAG+A+ E G L + +R GL A LGR +I+
Sbjct: 272 QIENAGVALKTLEA----------------TGLPLSEKAIREGLKNAKNLGRFEIL---- 311
Query: 338 LVPNSSGLFENSSGELIFYLDGAHTAESMEACAK 371
+G++ + LDGAH E+ +
Sbjct: 312 ----------EKNGKM-YILDGAHNPHGAESLVR 334
>pdb|1FGS|A Chain A, Folylpolyglutamate Synthetase From Lactobacillus Casei
Length = 428
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 103/347 (29%), Positives = 154/347 (44%), Gaps = 68/347 (19%)
Query: 52 GRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSP 111
+ G +R+ L LG + + + IHV+GT GKGS +L G GL+TSP
Sbjct: 17 AKTGDHRRILTLLHALGNPQQ--QGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSP 74
Query: 112 HLIDVRERFRINGLDITE----DKFLFYFWECWHLLRE----NVTEDLPMPPLFQFLTVL 163
++ ER I+ I + + F L ++ NVTE F+F+T L
Sbjct: 75 FIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTE-------FEFITAL 127
Query: 164 AFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKA 223
A+ F QVDVA+IEVG+GG+ DSTNVI PVV +T + +DH +LLG+T+ IA HKA
Sbjct: 128 AYWYFRQRQVDVAVIEVGIGGDTDSTNVIT-PVVSVLTEVALDHQKLLGHTITAIAKHKA 186
Query: 224 GIFKPQIPAFT---VPQLSEAMSVLQ----------DRALELMVP--------LEVAAPL 262
GI K IP T VP + ++ DR + VP
Sbjct: 187 GIIKRGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDR--DFSVPKAKLHGWGQRFTYED 244
Query: 263 DIEKLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLS 322
++ LE+ L GD+Q N +A+ ++ + ++T W N Q GL+
Sbjct: 245 QDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQT-EWPLTPQNIRQ----------GLA 293
Query: 323 TAHLLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEAC 369
+H R + + D L+ +DGAH + +
Sbjct: 294 ASHWPARLEKISDTPLI----------------VIDGAHNPDGINGL 324
>pdb|2GCA|A Chain A, Apo Form Of L. Casei Fpgs
Length = 428
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 102/346 (29%), Positives = 153/346 (44%), Gaps = 68/346 (19%)
Query: 53 RYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPH 112
+ G +R+ L LG + + + IHV+GT GKGS +L G GL+TSP
Sbjct: 18 KTGDHRRILTLLHALGNPQQ--QGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPF 75
Query: 113 LIDVRERFRINGLDITE----DKFLFYFWECWHLLRE----NVTEDLPMPPLFQFLTVLA 164
++ ER I+ I + + F L ++ NVTE F+F+T L
Sbjct: 76 IMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTE-------FEFITALG 128
Query: 165 FKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAG 224
+ F QVDVA+IEVG+GG+ DSTNVI PVV +T + +DH +LLG+T+ IA HKAG
Sbjct: 129 YWYFRQRQVDVAVIEVGIGGDTDSTNVIT-PVVSVLTEVALDHQKLLGHTITAIAKHKAG 187
Query: 225 IFKPQIPAFT---VPQLSEAMSVLQ----------DRALELMVP--------LEVAAPLD 263
I K IP T VP + ++ DR + VP
Sbjct: 188 IIKRGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDR--DFSVPKAKLHGWGQRFTYEDQ 245
Query: 264 IEKLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLST 323
++ LE+ L GD+Q N +A+ ++ + ++T W N Q GL+
Sbjct: 246 DGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQT-EWPLTPQNIRQ----------GLAA 294
Query: 324 AHLLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEAC 369
+H R + + D L+ +DGAH + +
Sbjct: 295 SHWPARLEKISDTPLI----------------VIDGAHNPDGINGL 324
>pdb|1JBV|A Chain A, Fpgs-Amppcp Complex
pdb|1JBW|A Chain A, Fpgs-Amppcp-Folate Complex
Length = 428
Score = 118 bits (295), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 102/347 (29%), Positives = 153/347 (44%), Gaps = 68/347 (19%)
Query: 52 GRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSP 111
+ G +R+ L LG + + + IHV+GT GKGS +L G GL+TSP
Sbjct: 17 AKTGDHRRILTLLHALGNPQQ--QGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSP 74
Query: 112 HLIDVRERFRINGLDITE----DKFLFYFWECWHLLRE----NVTEDLPMPPLFQFLTVL 163
++ ER I+ I + + F L ++ NVTE F+F+T L
Sbjct: 75 FIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTE-------FEFITAL 127
Query: 164 AFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKA 223
A+ F QVDVA+IEVG+GG+ DSTNVI PVV +T + +DH +LLG+T+ IA H A
Sbjct: 128 AYWYFRQRQVDVAVIEVGIGGDTDSTNVIT-PVVSVLTEVALDHQKLLGHTITAIAKHXA 186
Query: 224 GIFKPQIPAFT---VPQLSEAMSVLQ----------DRALELMVP--------LEVAAPL 262
GI K IP T VP + ++ DR + VP
Sbjct: 187 GIIKRGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDR--DFSVPKAKLHGWGQRFTYED 244
Query: 263 DIEKLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLS 322
++ LE+ L GD+Q N +A+ ++ + ++T W N Q GL+
Sbjct: 245 QDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQT-EWPLTPQNIRQ----------GLA 293
Query: 323 TAHLLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEAC 369
+H R + + D L+ +DGAH + +
Sbjct: 294 ASHWPARLEKISDTPLI----------------VIDGAHNPDGINGL 324
>pdb|2GCB|A Chain A, G51sS52T DOUBLE MUTANT OF L. CASEI FPGS
Length = 428
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 101/347 (29%), Positives = 153/347 (44%), Gaps = 68/347 (19%)
Query: 52 GRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSP 111
+ G +R+ L LG + + + IHV+GT GK + +L G GL+TSP
Sbjct: 17 AKTGDHRRILTLLHALGNPQQ--QGRYIHVTGTNGKSTAANAIAHVLEASGLTVGLYTSP 74
Query: 112 HLIDVRERFRINGLDITE----DKFLFYFWECWHLLRE----NVTEDLPMPPLFQFLTVL 163
++ ER I+ I + + F L ++ NVTE F+F+T L
Sbjct: 75 FIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTE-------FEFITAL 127
Query: 164 AFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKA 223
+ F QVDVA+IEVG+GG+ DSTNVI PVV +TS+ +DH +LLG+T+ IA HKA
Sbjct: 128 GYWYFRQRQVDVAVIEVGIGGDTDSTNVIT-PVVSVLTSVALDHQKLLGHTITAIAKHKA 186
Query: 224 GIFKPQIPAFT---VPQLSEAMSVLQ----------DRALELMVP--------LEVAAPL 262
GI K IP T VP + ++ DR + VP
Sbjct: 187 GIIKRGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDR--DFSVPKAKLHGWGQRFTYED 244
Query: 263 DIEKLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLS 322
++ LE+ L GD+Q N +A+ ++ + ++T W N Q GL+
Sbjct: 245 QDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQT-EWPLTPQNIRQ----------GLA 293
Query: 323 TAHLLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEAC 369
+H R + + D L+ +DGAH + +
Sbjct: 294 ASHWPARLEKISDTPLI----------------VIDGAHNPDGINGL 324
>pdb|2GC6|A Chain A, S73a Mutant Of L. Casei Fpgs
Length = 428
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 152/346 (43%), Gaps = 68/346 (19%)
Query: 53 RYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPH 112
+ G +R+ L LG + + + IHV+GT GKGS +L G GL+T+P
Sbjct: 18 KTGDHRRILTLLHALGNPQQ--QGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTAPF 75
Query: 113 LIDVRERFRINGLDITE----DKFLFYFWECWHLLRE----NVTEDLPMPPLFQFLTVLA 164
++ ER I+ I + + F L ++ NVTE F+F+T L
Sbjct: 76 IMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTE-------FEFITALG 128
Query: 165 FKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAG 224
+ F QVDVA+IEVG+GG+ DSTNVI PVV +T + +DH +LLG+T+ IA H AG
Sbjct: 129 YWYFRQRQVDVAVIEVGIGGDTDSTNVIT-PVVSVLTEVALDHQKLLGHTITAIAKHXAG 187
Query: 225 IFKPQIPAFT---VPQLSEAMSVLQ----------DRALELMVP--------LEVAAPLD 263
I K IP T VP + ++ DR + VP
Sbjct: 188 IIKRGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDR--DFSVPKAKLHGWGQRFTYEDQ 245
Query: 264 IEKLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLST 323
++ LE+ L GD+Q N +A+ ++ + ++T W N Q GL+
Sbjct: 246 DGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQT-EWPLTPQNIRQ----------GLAA 294
Query: 324 AHLLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEAC 369
+H R + + D L+ +DGAH + +
Sbjct: 295 SHWPARLEKISDTPLI----------------VIDGAHNPDGINGL 324
>pdb|2GC5|A Chain A, G51s Mutant Of L. Casei Fpgs
Length = 428
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/347 (28%), Positives = 151/347 (43%), Gaps = 68/347 (19%)
Query: 52 GRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSP 111
+ G +R+ L LG + + + IHV+GT GK S +L G GL+TSP
Sbjct: 17 AKTGDHRRILTLLHALGNPQQ--QGRYIHVTGTNGKSSAANAIAHVLEASGLTVGLYTSP 74
Query: 112 HLIDVRERFRINGLDITE----DKFLFYFWECWHLLRE----NVTEDLPMPPLFQFLTVL 163
++ ER I+ I + + F L ++ NVTE F+F+T L
Sbjct: 75 FIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTE-------FEFITAL 127
Query: 164 AFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKA 223
+ F QVDVA+IEVG+GG+ DSTNVI PVV +T + +DH +LLG+T+ IA H A
Sbjct: 128 GYWYFRQRQVDVAVIEVGIGGDTDSTNVIT-PVVSVLTEVALDHQKLLGHTITAIAKHXA 186
Query: 224 GIFKPQIPAFT---VPQLSEAMSVLQ----------DRALELMVP--------LEVAAPL 262
GI K IP T VP + ++ DR + VP
Sbjct: 187 GIIKRGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDR--DFSVPKAKLHGWGQRFTYED 244
Query: 263 DIEKLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLS 322
++ LE+ L GD+Q N +A+ ++ + ++T W N Q GL+
Sbjct: 245 QDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQT-EWPLTPQNIRQ----------GLA 293
Query: 323 TAHLLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEAC 369
+H R + + D L+ +DGAH + +
Sbjct: 294 ASHWPARLEKISDTPLI----------------VIDGAHNPDGINGL 324
>pdb|1W78|A Chain A, E.Coli Folc In Complex With Dhpp And Adp
pdb|1W7K|A Chain A, E.Coli Folc In Complex With Adp, Without Folate Substrate
Length = 422
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 109/208 (52%), Gaps = 26/208 (12%)
Query: 57 LQRMSMYLKILGLEDRIAELK----VIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPH 112
L+R+S+ LG+ LK V V+GT GKG+TC E+IL G++ G+++SPH
Sbjct: 32 LERVSLVAARLGV------LKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPH 85
Query: 113 LIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQ 172
L+ ER R+ G ++ E F E E+ D+ + F++ T+ A +F Q
Sbjct: 86 LVRYTERVRVQGQELPESAHTASFAEI-----ESARGDISL-TYFEYGTLSALWLFKQAQ 139
Query: 173 VDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFK----- 227
+DV I+EVGLGG D+TN++ V VTS+ +DH + LG I AGIF+
Sbjct: 140 LDVVILEVGLGGRLDATNIVDADVAV-VTSIALDHTDWLGPDRESIGREXAGIFRSEKPA 198
Query: 228 ----PQIPAFTVPQLSEAMSVLQDRALE 251
P++P+ E ++LQ R +E
Sbjct: 199 IVGEPEMPSTIADVAQEKGALLQRRGVE 226
>pdb|3N2A|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate
SynthaseDIHYDROFOLATE SYNTHASE FROM YERSINIA PESTIS CO92
pdb|3NRS|A Chain A, Crystal Structure Of Ligand-Free Bifunctional
Folylpolyglutamate SynthaseDIHYDROFOLATE SYNTHASE FROM
YERSINIA PESTIS C092
pdb|3PYZ|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate
SynthaseDIHYDROFOLATE SYNTHASE COMPLEXED WITH AMPPNP AND
MN ION FROM Yersinia Pestis C092
pdb|3QCZ|A Chain A, Crystal Structure Of Bifunctional Folylpolyglutamate
SynthaseDIHYDROFOLATE SYNTHASE WITH MN, AMPPNP AND
L-Glutamate Bound
Length = 437
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 90/156 (57%), Gaps = 7/156 (4%)
Query: 77 KVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYF 136
K+ V+GT GKG+TC EAIL G R G+++SPHL+ ER RI G +++E + F
Sbjct: 53 KIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTERVRIQGQELSEAEHSHSF 112
Query: 137 WECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPV 196
+ E D+ + F+F T+ A ++F ++DV I+EVGLGG D+TN++
Sbjct: 113 AQI-----EAGRGDISL-TYFEFGTLSALQLFKQAKLDVVILEVGLGGRLDATNIVDSD- 165
Query: 197 VCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPA 232
V +TS+ +DH + LG I KAG+F+ PA
Sbjct: 166 VAAITSIALDHTDWLGYDRESIGREKAGVFRGGKPA 201
>pdb|2VOR|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis
Folylpolyglutamate Synthase Complexed With Adp And
Amppcp
Length = 487
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 101/202 (50%), Gaps = 16/202 (7%)
Query: 57 LQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDV 116
L R+S + +LG R IH++GT GK S +A++ RTG TSPHL
Sbjct: 47 LTRISALMDLLGSPQR--SYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSP 104
Query: 117 RERFRINGLDITEDKFLFYFWECWHLL-------RENVTEDLPMPPLFQFLTVLAFKIFV 169
ER I+G I+ +++ + E L+ + + + P F+ LT +AF F
Sbjct: 105 VERISIDGKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFA 164
Query: 170 CEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIF--- 226
VDVA++EVG+GG D+TNVI PV +T + +DH++ LG + IA KAGI
Sbjct: 165 DAPVDVAVVEVGMGGRWDATNVINAPVAV-ITPISIDHVDYLGADIAGIAGEKAGIITRA 223
Query: 227 ---KPQIPAFTVPQLSEAMSVL 245
P A Q+ + M VL
Sbjct: 224 PDGSPDTVAVIGRQVPKVMEVL 245
>pdb|2VOS|A Chain A, Mycobacterium Tuberculosis Folylpolyglutamate Synthase
Complexed With Adp
Length = 487
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 127/270 (47%), Gaps = 35/270 (12%)
Query: 57 LQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDV 116
L R+S +LG R IH++GT GK S +A++ RTG TSPHL
Sbjct: 47 LTRISALXDLLGSPQR--SYPSIHIAGTNGKTSVARXVDALVTALHRRTGRTTSPHLQSP 104
Query: 117 RERFRINGLDITEDKFLFYFWECWHLL-------RENVTEDLPMPPLFQFLTVLAFKIFV 169
ER I+G I+ +++ + E L+ + + + P F+ LT AF F
Sbjct: 105 VERISIDGKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAXSKFEVLTAXAFAAFA 164
Query: 170 CEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIF--- 226
VDVA++EVG GG D+TNVI PV +T + +DH++ LG + IA KAGI
Sbjct: 165 DAPVDVAVVEVGXGGRWDATNVINAPVAV-ITPISIDHVDYLGADIAGIAGEKAGIITRA 223
Query: 227 ---KPQIPAF---TVPQLSEAM---------SVLQDRALELMVPLEVAAPLDIEKLKRLE 271
P A VP++ E + SV ++ + ++ ++A + +L+ L
Sbjct: 224 PDGSPDTVAVIGRQVPKVXEVLLAESVRADASVAREDSEFAVLRRQIAVGGQVLQLQGLG 283
Query: 272 -------LSLSGDHQLVNAGLAVSLSECWL 294
L L G+HQ NA LA++ E +
Sbjct: 284 GVYSDIYLPLHGEHQAHNAVLALASVEAFF 313
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,079,970
Number of Sequences: 62578
Number of extensions: 646743
Number of successful extensions: 1710
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1675
Number of HSP's gapped (non-prelim): 13
length of query: 585
length of database: 14,973,337
effective HSP length: 104
effective length of query: 481
effective length of database: 8,465,225
effective search space: 4071773225
effective search space used: 4071773225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)