Query 007911
Match_columns 585
No_of_seqs 422 out of 2919
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 16:59:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007911.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007911hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02881 tetrahydrofolylpolygl 100.0 3E-107 6E-112 891.8 51.3 527 16-585 4-530 (530)
2 KOG2525 Folylpolyglutamate syn 100.0 6E-103 1E-107 828.6 39.5 475 22-585 15-494 (496)
3 COG0285 FolC Folylpolyglutamat 100.0 1E-81 2.2E-86 675.2 42.4 404 26-584 2-422 (427)
4 PLN02913 dihydrofolate synthet 100.0 1E-78 2.2E-83 672.3 45.8 447 25-584 23-509 (510)
5 TIGR01499 folC folylpolyglutam 100.0 7E-74 1.5E-78 616.5 41.7 382 57-583 1-397 (397)
6 PRK10846 bifunctional folylpol 100.0 1.1E-68 2.3E-73 580.1 42.5 393 26-584 11-415 (416)
7 PRK00139 murE UDP-N-acetylmura 100.0 2.7E-44 5.9E-49 394.2 31.7 292 56-461 72-385 (460)
8 PRK11929 putative bifunctional 100.0 6E-42 1.3E-46 405.6 33.9 296 56-461 89-420 (958)
9 PRK14022 UDP-N-acetylmuramoyla 100.0 7.8E-41 1.7E-45 368.8 34.0 278 56-446 87-390 (481)
10 TIGR02068 cya_phycin_syn cyano 100.0 1.7E-40 3.7E-45 387.7 37.8 289 59-462 462-794 (864)
11 TIGR01085 murE UDP-N-acetylmur 100.0 1.2E-39 2.5E-44 357.7 32.1 298 56-461 62-394 (464)
12 COG0769 MurE UDP-N-acetylmuram 100.0 3.2E-38 6.9E-43 345.8 33.9 281 69-462 84-396 (475)
13 TIGR01143 murF UDP-N-acetylmur 100.0 1.5E-38 3.2E-43 344.7 29.0 277 56-462 53-365 (417)
14 PRK01438 murD UDP-N-acetylmura 100.0 1.5E-36 3.3E-41 334.2 32.2 251 74-460 120-400 (480)
15 PRK01390 murD UDP-N-acetylmura 100.0 1.9E-35 4E-40 324.1 30.3 213 75-371 113-351 (460)
16 PRK03803 murD UDP-N-acetylmura 100.0 4.5E-35 9.8E-40 320.0 31.1 212 75-375 107-341 (448)
17 PRK14093 UDP-N-acetylmuramoyla 100.0 2E-35 4.3E-40 325.8 28.5 288 56-460 87-408 (479)
18 PRK10773 murF UDP-N-acetylmura 100.0 3E-35 6.4E-40 322.2 28.2 280 57-460 80-392 (453)
19 PRK04308 murD UDP-N-acetylmura 100.0 1.5E-34 3.3E-39 315.6 31.3 213 76-373 110-341 (445)
20 PRK02705 murD UDP-N-acetylmura 100.0 1.1E-34 2.3E-39 317.6 28.8 251 75-460 108-382 (459)
21 PRK00421 murC UDP-N-acetylmura 100.0 1.7E-34 3.7E-39 316.7 30.2 214 76-376 107-347 (461)
22 PRK03806 murD UDP-N-acetylmura 100.0 1.6E-34 3.4E-39 314.8 28.3 211 75-373 104-334 (438)
23 PRK11929 putative bifunctional 100.0 5.3E-34 1.2E-38 337.9 31.6 284 56-460 582-902 (958)
24 PRK02006 murD UDP-N-acetylmura 100.0 2.1E-33 4.5E-38 311.0 31.7 231 57-372 104-385 (498)
25 TIGR01081 mpl UDP-N-acetylmura 100.0 1.9E-33 4.1E-38 307.5 29.5 215 77-376 103-346 (448)
26 PRK14106 murD UDP-N-acetylmura 100.0 2.8E-33 6.1E-38 305.5 30.5 212 76-373 108-345 (450)
27 TIGR01087 murD UDP-N-acetylmur 100.0 3.7E-33 8E-38 303.5 31.3 212 75-373 101-330 (433)
28 PRK03369 murD UDP-N-acetylmura 100.0 8.7E-34 1.9E-38 313.4 24.3 245 77-461 118-384 (488)
29 PRK14573 bifunctional D-alanyl 100.0 2.5E-33 5.4E-38 326.7 26.3 257 76-462 104-380 (809)
30 PRK11930 putative bifunctional 100.0 2.8E-33 6E-38 326.9 26.3 284 56-460 86-398 (822)
31 PRK02472 murD UDP-N-acetylmura 100.0 2.1E-32 4.6E-37 298.4 30.3 212 75-372 107-340 (447)
32 TIGR01082 murC UDP-N-acetylmur 100.0 4.1E-32 8.8E-37 297.0 32.5 214 76-376 99-341 (448)
33 PRK04690 murD UDP-N-acetylmura 100.0 1.5E-32 3.2E-37 302.2 28.3 239 76-444 115-371 (468)
34 PRK01368 murD UDP-N-acetylmura 100.0 2E-32 4.3E-37 300.0 27.4 214 75-373 103-341 (454)
35 PRK00141 murD UDP-N-acetylmura 100.0 1E-31 2.3E-36 295.8 25.3 243 77-460 122-389 (473)
36 COG0770 MurF UDP-N-acetylmuram 100.0 5.6E-31 1.2E-35 286.3 29.4 282 56-462 82-396 (451)
37 COG0771 MurD UDP-N-acetylmuram 100.0 1.7E-31 3.7E-36 288.3 22.6 250 75-429 109-378 (448)
38 COG0773 MurC UDP-N-acetylmuram 100.0 1.2E-29 2.7E-34 271.8 32.3 255 75-460 106-388 (459)
39 PRK04663 murD UDP-N-acetylmura 100.0 3.7E-30 8.1E-35 280.8 25.6 208 76-373 108-335 (438)
40 PRK01710 murD UDP-N-acetylmura 100.0 2.4E-29 5.1E-34 276.0 25.1 248 75-462 116-385 (458)
41 PRK00683 murD UDP-N-acetylmura 100.0 2E-28 4.3E-33 265.7 26.4 204 76-371 102-309 (418)
42 PRK03815 murD UDP-N-acetylmura 99.9 4.6E-25 9.9E-30 238.3 26.5 196 77-371 90-294 (401)
43 PRK14016 cyanophycin synthetas 99.9 6E-25 1.3E-29 253.0 20.6 219 60-332 464-726 (727)
44 PF08245 Mur_ligase_M: Mur lig 99.9 3.3E-24 7.1E-29 207.2 16.5 160 81-290 1-188 (188)
45 PF02875 Mur_ligase_C: Mur lig 99.2 1.8E-11 4E-16 105.3 7.7 78 326-462 1-81 (91)
46 COG1703 ArgK Putative periplas 97.4 0.00075 1.6E-08 70.1 9.9 155 60-239 37-201 (323)
47 PF03308 ArgK: ArgK protein; 96.6 0.017 3.7E-07 59.3 10.7 148 59-238 14-178 (266)
48 TIGR00750 lao LAO/AO transport 96.0 0.06 1.3E-06 56.4 11.8 48 60-109 20-69 (300)
49 PRK09435 membrane ATPase/prote 94.1 0.23 5.1E-06 53.0 9.3 48 60-109 42-91 (332)
50 PHA02519 plasmid partition pro 93.1 0.42 9E-06 52.2 9.2 54 55-108 82-141 (387)
51 PRK13705 plasmid-partitioning 93.0 0.44 9.6E-06 52.0 9.2 54 55-108 82-141 (388)
52 COG1072 CoaA Panthothenate kin 91.3 1.9 4.1E-05 44.9 10.8 92 61-175 68-163 (283)
53 PRK01077 cobyrinic acid a,c-di 91.1 0.6 1.3E-05 51.9 7.6 35 76-110 3-40 (451)
54 PRK13869 plasmid-partitioning 90.8 0.56 1.2E-05 51.4 7.0 55 54-108 86-156 (405)
55 COG0489 Mrp ATPases involved i 90.0 0.76 1.7E-05 47.5 6.8 34 75-108 56-92 (265)
56 COG2403 Predicted GTPase [Gene 89.0 2.1 4.7E-05 46.2 9.2 38 75-112 125-165 (449)
57 TIGR03172 probable selenium-de 88.7 0.45 9.6E-06 48.4 3.9 37 78-114 1-37 (232)
58 COG1763 MobB Molybdopterin-gua 87.9 0.65 1.4E-05 44.6 4.2 37 76-112 2-40 (161)
59 cd03114 ArgK-like The function 87.7 2.8 6E-05 39.4 8.3 58 169-236 88-146 (148)
60 TIGR01007 eps_fam capsular exo 87.6 1.1 2.5E-05 43.7 5.9 33 75-107 16-51 (204)
61 TIGR03029 EpsG chain length de 87.5 1.1 2.4E-05 46.0 5.9 52 57-108 84-138 (274)
62 TIGR03018 pepcterm_TyrKin exop 87.2 1.4 3.1E-05 43.4 6.4 37 72-108 31-71 (207)
63 PRK10416 signal recognition pa 86.7 4.3 9.4E-05 43.1 10.0 36 75-110 113-150 (318)
64 cd02117 NifH_like This family 86.7 0.73 1.6E-05 45.5 4.0 31 78-108 2-34 (212)
65 TIGR00064 ftsY signal recognit 85.8 1.8 3.9E-05 44.9 6.5 37 74-110 70-108 (272)
66 cd01983 Fer4_NifH The Fer4_Nif 85.7 0.98 2.1E-05 37.3 3.7 31 79-109 2-34 (99)
67 KOG0780 Signal recognition par 85.0 2.5 5.3E-05 46.0 7.1 101 76-200 101-219 (483)
68 cd02035 ArsA ArsA ATPase funct 84.4 5.5 0.00012 39.6 9.0 95 83-183 8-124 (217)
69 PRK14974 cell division protein 84.4 2.6 5.5E-05 45.3 7.0 36 75-110 139-176 (336)
70 PRK00652 lpxK tetraacyldisacch 84.3 2.4 5.1E-05 45.3 6.7 52 58-109 30-86 (325)
71 PHA02518 ParA-like protein; Pr 82.3 1.6 3.4E-05 42.4 4.1 31 78-108 2-35 (211)
72 TIGR03371 cellulose_yhjQ cellu 82.3 1.5 3.3E-05 43.7 4.1 32 77-108 2-36 (246)
73 PF00448 SRP54: SRP54-type pro 81.7 1.2 2.6E-05 43.9 3.0 34 78-111 3-38 (196)
74 PRK05439 pantothenate kinase; 81.3 21 0.00045 38.0 12.2 35 75-109 85-123 (311)
75 TIGR03453 partition_RepA plasm 81.3 3.3 7.1E-05 45.0 6.5 37 72-108 100-139 (387)
76 PRK13235 nifH nitrogenase redu 81.1 1.8 3.8E-05 44.5 4.1 32 77-108 2-35 (274)
77 COG0132 BioD Dethiobiotin synt 80.4 1.9 4.1E-05 43.6 3.9 34 76-109 2-38 (223)
78 PF03205 MobB: Molybdopterin g 80.1 2 4.3E-05 40.1 3.8 36 77-112 1-38 (140)
79 COG1618 Predicted nucleotide k 79.7 2.5 5.4E-05 40.8 4.3 35 78-112 7-43 (179)
80 TIGR01968 minD_bact septum sit 79.7 2.1 4.6E-05 42.9 4.1 32 77-108 2-36 (261)
81 PRK13896 cobyrinic acid a,c-di 79.2 7.4 0.00016 43.2 8.4 33 78-110 3-38 (433)
82 PRK05632 phosphate acetyltrans 77.8 16 0.00035 42.9 11.2 33 78-111 4-39 (684)
83 PRK14494 putative molybdopteri 77.7 2.6 5.7E-05 42.8 4.0 37 76-112 1-39 (229)
84 TIGR03815 CpaE_hom_Actino heli 77.5 5.1 0.00011 42.2 6.4 51 57-108 75-128 (322)
85 TIGR01287 nifH nitrogenase iro 75.8 2.9 6.3E-05 42.9 3.8 31 78-108 2-34 (275)
86 PRK06761 hypothetical protein; 75.6 28 0.00062 36.5 11.1 59 77-137 4-64 (282)
87 TIGR00554 panK_bact pantothena 75.1 17 0.00037 38.3 9.3 26 76-101 62-89 (290)
88 PRK15453 phosphoribulokinase; 74.9 3.6 7.8E-05 43.2 4.2 33 74-106 3-37 (290)
89 PRK13849 putative crown gall t 74.6 3.8 8.2E-05 41.5 4.2 32 77-108 2-36 (231)
90 PRK13232 nifH nitrogenase redu 74.4 3.5 7.6E-05 42.3 4.1 32 77-108 2-35 (273)
91 TIGR01969 minD_arch cell divis 73.5 4 8.7E-05 40.7 4.1 31 78-108 2-35 (251)
92 CHL00175 minD septum-site dete 73.4 3.8 8.3E-05 42.1 4.1 33 76-108 15-50 (281)
93 PF13500 AAA_26: AAA domain; P 73.1 3.6 7.8E-05 40.0 3.6 32 78-109 2-36 (199)
94 PRK10037 cell division protein 72.6 4.3 9.3E-05 41.1 4.1 31 77-107 2-35 (250)
95 COG1663 LpxK Tetraacyldisaccha 72.6 8.3 0.00018 41.3 6.3 52 57-110 30-85 (336)
96 PRK14495 putative molybdopteri 71.9 4.6 9.9E-05 44.9 4.3 37 76-112 1-39 (452)
97 TIGR00682 lpxK tetraacyldisacc 71.6 9.5 0.00021 40.5 6.5 51 59-109 10-65 (311)
98 PRK07667 uridine kinase; Provi 71.3 8.5 0.00018 37.5 5.7 36 77-112 18-55 (193)
99 PRK11670 antiporter inner memb 71.1 4.6 0.0001 43.8 4.1 33 76-108 107-142 (369)
100 cd03116 MobB Molybdenum is an 70.9 5.4 0.00012 38.1 4.1 35 76-110 1-37 (159)
101 PRK10818 cell division inhibit 70.8 4.6 0.0001 41.1 3.9 31 77-107 3-36 (270)
102 PRK13233 nifH nitrogenase redu 70.5 4.8 0.0001 41.2 4.0 32 77-108 3-37 (275)
103 COG1797 CobB Cobyrinic acid a, 70.3 15 0.00032 40.7 7.7 29 78-106 2-33 (451)
104 PRK12374 putative dithiobiotin 70.1 5.3 0.00011 40.1 4.1 32 78-109 4-38 (231)
105 PRK01906 tetraacyldisaccharide 69.8 11 0.00023 40.6 6.5 52 58-109 37-93 (338)
106 cd02040 NifH NifH gene encodes 69.8 3.7 7.9E-05 41.7 2.9 31 78-108 3-35 (270)
107 PRK00784 cobyric acid synthase 69.6 4.3 9.4E-05 45.6 3.7 34 77-110 3-39 (488)
108 TIGR01425 SRP54_euk signal rec 69.3 12 0.00026 41.5 7.0 100 10-110 27-136 (429)
109 COG0541 Ffh Signal recognition 69.2 18 0.0004 40.0 8.1 34 77-110 101-136 (451)
110 COG0572 Udk Uridine kinase [Nu 68.9 7.1 0.00015 39.4 4.6 50 74-125 6-63 (218)
111 PF00485 PRK: Phosphoribulokin 68.8 4.4 9.6E-05 39.4 3.1 27 78-104 1-29 (194)
112 COG0552 FtsY Signal recognitio 68.7 6 0.00013 42.3 4.2 34 74-107 137-172 (340)
113 PRK09841 cryptic autophosphory 68.7 8.6 0.00019 45.4 6.0 35 74-108 529-566 (726)
114 COG2894 MinD Septum formation 68.0 6.8 0.00015 39.8 4.2 32 77-108 3-37 (272)
115 PRK11519 tyrosine kinase; Prov 68.0 9.5 0.00021 45.1 6.2 51 58-108 508-561 (719)
116 PF02606 LpxK: Tetraacyldisacc 67.7 14 0.00031 39.5 6.9 55 58-112 16-75 (326)
117 PRK14493 putative bifunctional 65.8 7.1 0.00015 40.7 4.1 34 76-110 1-36 (274)
118 PF01656 CbiA: CobQ/CobB/MinD/ 65.7 6 0.00013 37.6 3.3 32 78-109 3-34 (195)
119 cd02036 MinD Bacterial cell di 65.5 6.3 0.00014 36.9 3.4 30 79-108 5-34 (179)
120 PRK00090 bioD dithiobiotin syn 65.5 6.8 0.00015 38.7 3.7 31 79-109 2-35 (222)
121 COG1936 Predicted nucleotide k 65.1 5.4 0.00012 38.9 2.8 24 78-105 2-27 (180)
122 PF13614 AAA_31: AAA domain; P 64.9 7.9 0.00017 35.6 3.9 32 77-108 1-35 (157)
123 TIGR00176 mobB molybdopterin-g 63.7 7.5 0.00016 36.8 3.5 33 78-110 1-35 (155)
124 PRK14489 putative bifunctional 63.6 15 0.00032 39.8 6.1 57 55-112 185-243 (366)
125 cd02025 PanK Pantothenate kina 63.5 7.2 0.00016 39.1 3.5 29 78-106 1-33 (220)
126 TIGR03499 FlhF flagellar biosy 62.7 14 0.00029 38.5 5.5 36 75-110 193-232 (282)
127 PLN02796 D-glycerate 3-kinase 62.6 11 0.00024 40.6 4.9 43 77-131 101-145 (347)
128 PRK00771 signal recognition pa 62.2 22 0.00047 39.6 7.2 98 13-111 26-132 (437)
129 cd02033 BchX Chlorophyllide re 61.7 11 0.00024 40.4 4.6 37 72-108 27-65 (329)
130 TIGR02880 cbbX_cfxQ probable R 60.6 10 0.00022 39.5 4.2 43 61-104 44-88 (284)
131 PRK13234 nifH nitrogenase redu 59.5 11 0.00025 39.3 4.3 34 75-108 3-38 (295)
132 PRK06995 flhF flagellar biosyn 58.9 20 0.00043 40.5 6.3 34 76-109 256-293 (484)
133 cd02032 Bchl_like This family 58.4 8.4 0.00018 39.3 3.1 31 78-108 2-34 (267)
134 PRK11889 flhF flagellar biosyn 58.3 19 0.00042 39.8 5.8 34 77-110 242-277 (436)
135 TIGR00313 cobQ cobyric acid sy 57.9 8.4 0.00018 43.2 3.2 27 85-111 10-36 (475)
136 TIGR01281 DPOR_bchL light-inde 57.9 8.4 0.00018 39.2 2.9 27 82-108 8-34 (268)
137 TIGR01005 eps_transp_fam exopo 57.2 18 0.00039 42.9 5.9 34 74-107 544-580 (754)
138 KOG3347 Predicted nucleotide k 56.7 9.4 0.0002 36.6 2.7 25 74-98 5-31 (176)
139 cd02028 UMPK_like Uridine mono 56.2 13 0.00027 36.0 3.7 32 78-109 1-34 (179)
140 PF06564 YhjQ: YhjQ protein; 56.2 11 0.00024 38.6 3.4 28 78-105 6-33 (243)
141 PRK10751 molybdopterin-guanine 56.1 14 0.0003 35.9 3.9 36 75-110 5-42 (173)
142 cd03109 DTBS Dethiobiotin synt 55.3 10 0.00023 34.8 2.8 29 81-109 5-34 (134)
143 PRK13236 nitrogenase reductase 55.0 11 0.00023 39.5 3.2 35 74-108 4-40 (296)
144 cd02029 PRK_like Phosphoribulo 54.5 13 0.00028 38.8 3.6 31 78-108 1-33 (277)
145 cd00550 ArsA_ATPase Oxyanion-t 54.4 60 0.0013 33.1 8.5 28 83-110 9-36 (254)
146 cd02042 ParA ParA and ParB of 54.2 15 0.00033 31.4 3.6 31 78-108 4-34 (104)
147 TIGR00959 ffh signal recogniti 53.8 3.6E+02 0.0077 30.1 15.5 34 77-110 100-136 (428)
148 COG4615 PvdE ABC-type sideroph 53.6 8.8 0.00019 42.2 2.3 45 75-134 348-394 (546)
149 COG4133 CcmA ABC-type transpor 53.5 13 0.00029 36.9 3.3 39 77-130 29-69 (209)
150 PLN03046 D-glycerate 3-kinase; 53.1 22 0.00047 39.6 5.2 46 76-133 212-259 (460)
151 PRK13230 nitrogenase reductase 52.8 11 0.00024 38.8 2.8 32 77-108 2-35 (279)
152 cd02037 MRP-like MRP (Multiple 52.6 15 0.00032 34.7 3.5 26 83-108 9-34 (169)
153 TIGR00379 cobB cobyrinic acid 52.5 15 0.00032 41.0 3.9 28 82-109 7-35 (449)
154 PRK14721 flhF flagellar biosyn 52.1 27 0.00059 38.7 5.9 39 74-112 189-231 (420)
155 CHL00072 chlL photochlorophyll 51.7 13 0.00028 38.9 3.1 30 79-108 3-34 (290)
156 TIGR02016 BchX chlorophyllide 51.6 12 0.00026 39.2 3.0 31 78-108 2-34 (296)
157 COG4240 Predicted kinase [Gene 51.4 32 0.00068 35.4 5.6 50 59-108 32-85 (300)
158 PRK13886 conjugal transfer pro 51.2 1.3E+02 0.0028 30.9 10.2 28 81-108 10-37 (241)
159 PRK13185 chlL protochlorophyll 50.9 13 0.00028 37.9 3.0 31 77-107 3-35 (270)
160 PRK05703 flhF flagellar biosyn 50.1 25 0.00053 39.0 5.2 34 77-110 222-259 (424)
161 PRK12723 flagellar biosynthesi 50.1 29 0.00063 38.1 5.6 34 77-110 175-214 (388)
162 PF09140 MipZ: ATPase MipZ; I 50.1 12 0.00025 38.8 2.4 31 78-108 2-35 (261)
163 PRK14491 putative bifunctional 49.9 19 0.00041 41.7 4.4 38 75-112 9-48 (597)
164 COG0003 ArsA Predicted ATPase 49.8 1.2E+02 0.0025 32.6 10.0 104 77-180 3-133 (322)
165 cd01672 TMPK Thymidine monopho 49.3 23 0.00051 33.5 4.3 34 78-111 2-37 (200)
166 TIGR00347 bioD dethiobiotin sy 48.9 16 0.00035 34.2 3.1 24 85-108 9-32 (166)
167 KOG3022 Predicted ATPase, nucl 48.6 16 0.00035 38.2 3.1 32 77-108 48-82 (300)
168 PF10662 PduV-EutP: Ethanolami 47.7 68 0.0015 30.3 7.0 72 170-247 61-139 (143)
169 PRK10867 signal recognition pa 47.6 46 0.00099 37.1 6.8 35 76-110 100-137 (433)
170 cd02034 CooC The accessory pro 46.8 21 0.00046 32.1 3.4 27 83-109 8-34 (116)
171 PRK06696 uridine kinase; Valid 46.6 26 0.00057 34.8 4.4 32 75-106 21-54 (223)
172 PF07015 VirC1: VirC1 protein; 46.5 18 0.00038 36.9 3.0 33 77-109 2-37 (231)
173 PF07755 DUF1611: Protein of u 45.6 24 0.00052 37.4 4.0 37 75-111 111-150 (301)
174 PF08497 Radical_SAM_N: Radica 45.2 29 0.00063 36.5 4.4 45 60-112 5-56 (302)
175 PF05378 Hydant_A_N: Hydantoin 44.6 55 0.0012 31.7 6.1 27 89-115 63-89 (176)
176 PRK13231 nitrogenase reductase 43.2 10 0.00022 38.6 0.7 31 77-108 3-35 (264)
177 PRK09270 nucleoside triphospha 42.8 46 0.001 33.2 5.5 31 75-105 32-64 (229)
178 cd03111 CpaE_like This protein 42.2 27 0.00058 30.6 3.2 27 82-108 8-35 (106)
179 cd03115 SRP The signal recogni 42.1 38 0.00081 31.9 4.5 34 78-111 2-37 (173)
180 PLN02974 adenosylmethionine-8- 41.8 27 0.00058 42.0 4.1 35 74-108 25-62 (817)
181 COG3954 PrkB Phosphoribulokina 40.9 19 0.00041 35.9 2.2 31 74-104 3-35 (289)
182 PRK12377 putative replication 40.8 24 0.00052 36.2 3.1 36 77-112 102-139 (248)
183 PRK03846 adenylylsulfate kinas 39.4 45 0.00097 32.5 4.6 30 76-105 24-55 (198)
184 COG1474 CDC6 Cdc6-related prot 39.4 1.1E+02 0.0023 33.4 7.9 58 71-144 41-98 (366)
185 PLN02924 thymidylate kinase 38.8 45 0.00098 33.5 4.6 37 71-107 11-49 (220)
186 PF02374 ArsA_ATPase: Anion-tr 38.7 27 0.00058 36.9 3.1 29 82-110 9-37 (305)
187 COG0125 Tmk Thymidylate kinase 38.6 29 0.00062 34.7 3.2 36 77-112 4-41 (208)
188 COG1192 Soj ATPases involved i 38.1 31 0.00067 34.8 3.4 30 78-107 7-37 (259)
189 COG3367 Uncharacterized conser 37.7 29 0.00063 37.0 3.1 40 72-111 144-186 (339)
190 TIGR00455 apsK adenylylsulfate 37.6 51 0.0011 31.5 4.7 31 76-106 18-50 (184)
191 PRK12726 flagellar biosynthesi 37.5 41 0.00089 37.0 4.3 36 75-110 205-242 (407)
192 PRK13507 formate--tetrahydrofo 37.4 1.2E+02 0.0026 34.8 8.0 43 217-259 389-436 (587)
193 COG0529 CysC Adenylylsulfate k 37.3 26 0.00056 34.6 2.5 29 77-105 24-54 (197)
194 COG4152 ABC-type uncharacteriz 37.2 26 0.00055 36.4 2.5 42 76-132 28-71 (300)
195 PF06418 CTP_synth_N: CTP synt 36.7 32 0.0007 35.8 3.2 32 77-108 2-37 (276)
196 TIGR00041 DTMP_kinase thymidyl 36.6 49 0.0011 31.7 4.4 31 77-107 4-36 (195)
197 PRK14723 flhF flagellar biosyn 36.3 68 0.0015 38.3 6.2 35 77-111 186-224 (767)
198 cd01130 VirB11-like_ATPase Typ 35.8 1.5E+02 0.0033 28.4 7.7 36 59-99 13-50 (186)
199 cd02023 UMPK Uridine monophosp 35.3 37 0.0008 32.8 3.3 30 78-109 1-32 (198)
200 TIGR00073 hypB hydrogenase acc 35.1 2.2E+02 0.0048 27.7 8.9 35 74-109 20-56 (207)
201 PRK12724 flagellar biosynthesi 34.9 44 0.00096 37.1 4.1 35 76-110 223-260 (432)
202 cd00477 FTHFS Formyltetrahydro 33.8 1.4E+02 0.003 34.0 7.7 87 173-259 276-391 (524)
203 COG4138 BtuD ABC-type cobalami 33.2 58 0.0013 32.3 4.1 42 75-132 24-67 (248)
204 cd00477 FTHFS Formyltetrahydro 32.9 70 0.0015 36.3 5.3 34 75-108 37-76 (524)
205 PRK01254 hypothetical protein; 32.7 39 0.00084 39.6 3.4 49 57-113 25-80 (707)
206 PRK13505 formate--tetrahydrofo 32.6 1.7E+02 0.0038 33.6 8.3 86 173-260 293-408 (557)
207 PRK00698 tmk thymidylate kinas 32.5 62 0.0013 31.0 4.4 31 77-107 4-36 (205)
208 PRK07933 thymidylate kinase; V 32.1 60 0.0013 32.3 4.3 34 78-111 2-37 (213)
209 PF13207 AAA_17: AAA domain; P 32.1 34 0.00073 29.9 2.2 25 78-105 1-27 (121)
210 cd03113 CTGs CTP synthetase (C 32.1 49 0.0011 34.1 3.6 30 78-107 2-35 (255)
211 COG0769 MurE UDP-N-acetylmuram 32.1 26 0.00057 39.4 1.9 96 75-212 63-160 (475)
212 PRK06835 DNA replication prote 31.9 40 0.00088 36.1 3.2 37 74-111 184-220 (329)
213 COG0504 PyrG CTP synthase (UTP 31.1 59 0.0013 36.7 4.3 32 77-108 2-37 (533)
214 KOG2749 mRNA cleavage and poly 29.5 84 0.0018 34.2 4.9 31 75-105 103-134 (415)
215 PF01650 Peptidase_C13: Peptid 29.1 5.3E+02 0.011 26.6 10.7 127 78-210 3-186 (256)
216 PRK13695 putative NTPase; Prov 28.6 66 0.0014 30.4 3.8 29 78-106 2-32 (174)
217 cd02019 NK Nucleoside/nucleoti 28.4 67 0.0014 25.8 3.2 31 78-110 1-33 (69)
218 PF01121 CoaE: Dephospho-CoA k 28.2 39 0.00084 32.9 2.1 24 78-105 2-27 (180)
219 PRK00889 adenylylsulfate kinas 28.0 86 0.0019 29.5 4.5 30 77-106 5-36 (175)
220 CHL00181 cbbX CbbX; Provisiona 27.9 60 0.0013 34.0 3.6 41 62-103 46-88 (287)
221 PRK07414 cob(I)yrinic acid a,c 27.4 85 0.0018 30.8 4.2 31 77-107 22-54 (178)
222 TIGR02768 TraA_Ti Ti-type conj 27.1 55 0.0012 39.0 3.5 31 77-108 372-402 (744)
223 COG1419 FlhF Flagellar GTP-bin 26.7 43 0.00094 36.9 2.3 37 76-112 203-243 (407)
224 TIGR00708 cobA cob(I)alamin ad 26.7 89 0.0019 30.4 4.2 30 77-106 6-37 (173)
225 PF03029 ATP_bind_1: Conserved 26.6 40 0.00086 34.3 1.9 28 79-107 2-29 (238)
226 COG2759 MIS1 Formyltetrahydrof 26.6 2.2E+02 0.0047 32.1 7.5 84 173-258 290-403 (554)
227 PF01268 FTHFS: Formate--tetra 26.4 83 0.0018 36.0 4.5 41 63-106 44-90 (557)
228 cd00561 CobA_CobO_BtuR ATP:cor 26.4 94 0.002 29.8 4.3 30 78-107 4-35 (159)
229 PLN02759 Formate--tetrahydrofo 26.4 3E+02 0.0064 32.1 8.8 33 227-259 448-486 (637)
230 TIGR00337 PyrG CTP synthase. C 25.5 83 0.0018 36.0 4.3 32 77-108 2-37 (525)
231 PRK08181 transposase; Validate 25.5 50 0.0011 34.3 2.4 36 74-110 107-142 (269)
232 PF02223 Thymidylate_kin: Thym 25.3 27 0.00059 33.3 0.4 23 85-107 7-29 (186)
233 TIGR00017 cmk cytidylate kinas 25.3 2.3E+02 0.005 28.3 7.1 22 77-98 3-26 (217)
234 PF01583 APS_kinase: Adenylyls 25.1 94 0.002 29.7 4.0 32 77-108 3-36 (156)
235 COG3640 CooC CO dehydrogenase 25.0 64 0.0014 33.2 3.0 28 78-105 2-32 (255)
236 cd02026 PRK Phosphoribulokinas 24.7 38 0.00083 35.1 1.4 25 78-102 1-27 (273)
237 PRK13506 formate--tetrahydrofo 24.6 94 0.002 35.7 4.5 31 75-105 53-89 (578)
238 PRK13768 GTPase; Provisional 24.4 88 0.0019 31.9 4.0 31 78-108 4-36 (253)
239 PF10673 DUF2487: Protein of u 24.2 1.5E+02 0.0032 28.0 5.1 77 354-466 18-98 (142)
240 PRK13507 formate--tetrahydrofo 24.0 1.1E+02 0.0024 35.2 4.8 41 63-106 53-99 (587)
241 PF01935 DUF87: Domain of unkn 24.0 70 0.0015 31.6 3.1 31 77-108 27-58 (229)
242 PRK05986 cob(I)alamin adenolsy 23.9 1E+02 0.0022 30.5 4.2 31 77-107 23-55 (191)
243 PRK09518 bifunctional cytidyla 23.8 4.2E+02 0.0091 31.4 10.0 21 78-98 3-25 (712)
244 PRK05480 uridine/cytidine kina 23.6 97 0.0021 30.2 4.0 24 75-98 5-30 (209)
245 COG5623 CLP1 Predicted GTPase 23.4 1.4E+02 0.0031 31.9 5.2 46 59-105 83-130 (424)
246 COG1125 OpuBA ABC-type proline 23.2 44 0.00095 35.0 1.4 40 77-131 28-69 (309)
247 PRK05380 pyrG CTP synthetase; 22.9 1E+02 0.0022 35.3 4.4 33 76-108 2-38 (533)
248 PTZ00202 tuzin; Provisional 22.9 3.1E+02 0.0067 31.2 7.9 50 55-112 269-320 (550)
249 COG0523 Putative GTPases (G3E 22.7 1.7E+02 0.0038 31.3 5.9 88 76-183 1-96 (323)
250 TIGR03708 poly_P_AMP_trns poly 22.6 3E+02 0.0064 31.3 8.0 52 77-143 41-94 (493)
251 COG0237 CoaE Dephospho-CoA kin 22.4 61 0.0013 32.2 2.3 26 76-105 2-29 (201)
252 cd00640 Trp-synth-beta_II Tryp 22.4 7E+02 0.015 24.7 10.1 95 88-185 59-166 (244)
253 PRK13973 thymidylate kinase; P 22.3 78 0.0017 31.2 3.1 36 77-112 4-41 (213)
254 TIGR00235 udk uridine kinase. 22.1 77 0.0017 31.0 2.9 25 76-100 6-32 (207)
255 PF11964 SpoIIAA-like: SpoIIAA 22.1 4.1E+02 0.0089 22.5 7.3 24 354-377 4-27 (109)
256 PRK14490 putative bifunctional 22.0 90 0.002 33.7 3.7 33 77-110 6-40 (369)
257 PRK13889 conjugal transfer rel 21.9 75 0.0016 39.1 3.3 30 78-108 367-396 (988)
258 cd03229 ABC_Class3 This class 21.8 53 0.0011 31.3 1.7 39 75-128 25-65 (178)
259 PRK13505 formate--tetrahydrofo 21.8 1.4E+02 0.003 34.3 5.1 34 75-108 54-93 (557)
260 PRK14722 flhF flagellar biosyn 21.8 1.2E+02 0.0025 33.3 4.5 36 76-111 137-176 (374)
261 PRK05541 adenylylsulfate kinas 21.6 1.4E+02 0.0031 28.1 4.6 32 74-105 5-38 (176)
262 PF00005 ABC_tran: ABC transpo 21.5 57 0.0012 29.1 1.8 38 77-129 12-51 (137)
263 PF01268 FTHFS: Formate--tetra 21.4 86 0.0019 35.9 3.4 85 173-259 292-406 (557)
264 PLN02327 CTP synthase 21.3 1.1E+02 0.0023 35.3 4.1 32 77-108 2-37 (557)
265 PTZ00301 uridine kinase; Provi 21.3 82 0.0018 31.4 3.0 27 76-102 3-32 (210)
266 COG0455 flhG Antiactivator of 21.3 1.1E+02 0.0023 31.8 3.9 29 77-105 3-34 (262)
267 PLN02759 Formate--tetrahydrofo 21.3 1.4E+02 0.0031 34.6 5.1 31 75-105 68-105 (637)
268 KOG3354 Gluconate kinase [Carb 21.0 71 0.0015 31.0 2.2 21 78-99 17-37 (191)
269 cd02038 FleN-like FleN is a me 20.9 1E+02 0.0023 28.1 3.4 30 79-108 5-34 (139)
270 TIGR02770 nickel_nikD nickel i 20.6 59 0.0013 32.3 1.8 25 75-99 11-37 (230)
271 PRK08939 primosomal protein Dn 20.5 1.2E+02 0.0026 32.0 4.2 35 77-111 157-193 (306)
272 KOG0635 Adenosine 5'-phosphosu 20.2 1.6E+02 0.0034 28.5 4.4 29 77-105 32-62 (207)
273 COG1131 CcmA ABC-type multidru 20.1 71 0.0015 33.4 2.4 41 75-130 30-72 (293)
No 1
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=100.00 E-value=2.7e-107 Score=891.80 Aligned_cols=527 Identities=60% Similarity=0.958 Sum_probs=419.0
Q ss_pred hhhhccCCCcCcHHHHHHHHHhhhhhhhcCCCccccccCCChHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHH
Q 007911 16 TEYEENLPLSSSYENAMQALSSLITRQKRGEQSHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCE 95 (585)
Q Consensus 16 ~~~~~~~~~~~~y~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~aml~ 95 (585)
-..+...+..++|++|+++|+++++++.+...... ..+|++|+++|++||+++|.+++++|||||||||||||+|++
T Consensus 4 ~~~~~~~~~~~~y~~a~~~L~sl~~~~~~~~~~~~---~~~L~rm~~~L~~LG~p~~~~~l~vIhVaGTnGKGSt~a~l~ 80 (530)
T PLN02881 4 MATEDDAPTSDSYEEALDALSSLITKKSRADPSNP---GDQFDLLFDYLKILELEEAISRLKVIHVAGTKGKGSTCTFTE 80 (530)
T ss_pred ccccccCccccCHHHHHHHHHhcccchhhcccccc---CCChHHHHHHHHHcCCCchhhcCCEEEEeCCCCHHHHHHHHH
Confidence 34456677888999999999999998665543333 378999999999999877778999999999999999999999
Q ss_pred HHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcE
Q 007911 96 AILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDV 175 (585)
Q Consensus 96 sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lTllA~~~F~~~~vd~ 175 (585)
+||+++|+|||+||||||+++||||+|||.+|+++.|.++||+||++++.......+.|+|||++|+|||++|.+++||+
T Consensus 81 siL~~~G~rvGl~tSPhL~~~rERiring~~Is~e~f~~~f~~v~~~l~~~~~~~~~~pt~Fe~lTlla~~~F~~~~vD~ 160 (530)
T PLN02881 81 SILRNCGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRYFWWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDV 160 (530)
T ss_pred HHHHHCCCCEEEECCCccCcceeEEEECCEecCHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCE
Confidence 99999999999999999999999999999999999999999999999997654555679999999999999999999999
Q ss_pred EEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccCCCCcEEeeCCchHHHHHHHHHHHhcCcc
Q 007911 176 AIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVP 255 (585)
Q Consensus 176 aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~g~~aV~~~qd~~~~~vl~~~a~~~~~~ 255 (585)
+|||||+|||+|+||++.+|+++|||||++||+++||+|+++|||+|+||||+|.|+|+.+|+++++++++++|++++++
T Consensus 161 aVlEvGlgGr~DaTnvi~~p~v~vITnIg~DH~~~LG~Tle~IA~~KagI~k~g~p~vt~~q~~ea~~vl~~~A~e~~a~ 240 (530)
T PLN02881 161 AILEVGLGGRLDATNVVQKPVVCGITSLGYDHMEILGDTLGKIAGEKAGIFKPGVPAFTVPQPDEAMRVLEERASELGVP 240 (530)
T ss_pred EEEEecCCCCchhhhccCCCCEEEEccccHHHHHhhcCCHHHHHHHHHHHHhcCCCEEEeCCChHHHHHHHHHHHHhCCc
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccchhhhhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCCCCCcEEEEec
Q 007911 256 LEVAAPLDIEKLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAHLLGRAQIVYD 335 (585)
Q Consensus 256 l~~~~~~~~~~~~~~~l~L~G~hq~~Na~lAia~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~~pGR~E~i~~ 335 (585)
+++++..+...+..+.++|.|.||..||++|++++..++++.|... .+.......+++.+++||+++.||||||++..
T Consensus 241 l~~v~~~~~~~~~~~~l~L~G~~Q~~NaalAla~~~~~l~~~~~~~--~~~~~~~~~l~~~i~~GL~~~~wpGR~e~v~~ 318 (530)
T PLN02881 241 LQVVEPLDSYGLSGLKLGLAGEHQYLNAGLAVALCSTWLQRTGHEE--FEALLQAGTLPEQFIKGLSTASLQGRAQVVPD 318 (530)
T ss_pred EEEecccccceecccCCCCCChhHHHhHHHHHHHHHHHHhhccccc--cccccccCCCHHHHHHHHHhCCCCceEEEecc
Confidence 9987653321223467899999999999999999999887654210 00001011357899999999999999999965
Q ss_pred ccCCCCCCCccccCCCCeEEEEecCCCHHHHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhcccccccccccc
Q 007911 336 ISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTK 415 (585)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~vilDgAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (585)
... ....++++.|||||||||+||++|.+||....+.....+... +.... +.+ +....
T Consensus 319 ~~~-------~~~~~~~~~~~LDGAHNp~s~~~l~~wf~~~~~~~~~~~~~~-~~~~~-~~~-------------~~~~~ 376 (530)
T PLN02881 319 SYI-------NSEDSGDLVFYLDGAHSPESMEACARWFSSAIKGDEQSPGSG-YGPHG-GGG-------------KSEDT 376 (530)
T ss_pred ccc-------cccCCCCCeEEEECCCCHHHHHHHHHHHHHHhcccccCCccc-ccccc-ccc-------------ccccc
Confidence 100 000013468999999999999999999988654322111100 00000 000 00001
Q ss_pred ccccCccEEEEEecCCCCChhhhhHHHHHHhhhcCCCccEEEEeCCCcccccccCCCCccCCCccccchhHHHHHHHHHH
Q 007911 416 HANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQFSLQRLWE 495 (585)
Q Consensus 416 ~~~~~~~~ilvFg~~~~Rd~~~ll~~l~~~~~~~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~w~ 495 (585)
...+..++|+||||+++||+..||+.|.+.|.+.+..||+||||||.++|++. ++. .+..++..+|+||+.+++.|+
T Consensus 377 ~~~~~~~~ilvF~~~~dkD~~~lL~~L~~~~~~~~~~f~~aiF~~n~~~~~~~--~~~-~~~~~~~~~l~~q~~l~~~W~ 453 (530)
T PLN02881 377 ESNKISEQILLFNCMSVRDPQLLLPPLANTCASNGVPFKKALFVPNISVYNKV--GSG-LPVDDPQVDLSWQFTLQRVWE 453 (530)
T ss_pred cccCCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCCCCeEEEcCCccccCCC--ccc-CCCcchhhhHHHHHHHHHHHH
Confidence 12234579999999999999999999999998788999999999999998876 444 333344568999999999999
Q ss_pred HhhcCCCCcccccccccccccCCCccccccCCCCCCCCcccCccceecCCHHHHHHHHHhhhhcCCCCcceEEEeCchhc
Q 007911 496 RIIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQVLVTGSLHL 575 (585)
Q Consensus 496 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~ai~~~~~~~~~~~~~~~~VlVTGSlhL 575 (585)
+|..+....+..+..+ +..+.+.+.....++++|||||++||+|+|+++.+++..++||||||||||
T Consensus 454 ~l~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~v~~si~~Ai~~~r~~~~~~~~~~~~vlVTGSlhL 520 (530)
T PLN02881 454 SLIRGKAGAPADAVCE-------------ESASSGLNDGKSDENSAVFPSLPLAIKWLRDCARENPSLRFQVLVTGSLHL 520 (530)
T ss_pred Hhcccccccccccccc-------------ccccccccCCCCCCceeEecCHHHHHHHHHHHhhhCCCcceEEEEecchhh
Confidence 9964322100000000 111111122223357999999999999999998776666899999999999
Q ss_pred hHhHHhhhcC
Q 007911 576 VGDVLKLLKR 585 (585)
Q Consensus 576 VG~~l~~l~~ 585 (585)
|||||++|+|
T Consensus 521 vG~~l~~l~~ 530 (530)
T PLN02881 521 VGDVLRLLKK 530 (530)
T ss_pred hhHHHHHhcC
Confidence 9999999986
No 2
>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=6.3e-103 Score=828.57 Aligned_cols=475 Identities=48% Similarity=0.743 Sum_probs=403.2
Q ss_pred CCCcCcHHHHHHHHHhhhhhhhcCCC---ccccccCCChHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHH
Q 007911 22 LPLSSSYENAMQALSSLITRQKRGEQ---SHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAIL 98 (585)
Q Consensus 22 ~~~~~~y~~a~~~L~~l~~~~~~~~~---~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~aml~sIL 98 (585)
....++|++|+.+||+||++.+...+ ........+|++|++||++||++++++++++|||||||||||||+|+++||
T Consensus 15 ~~~~~~~~~~v~~lnsLqsn~~~i~~~~~~~~~~~~~~l~~m~~~L~~lg~p~d~~~l~iIHVAGTkGKGStcaF~~SIL 94 (496)
T KOG2525|consen 15 TISSKTYEDAVRYLNSLQSNAALIEKLRRQDDNPQGLTLPRMRKLLERLGNPEDQNSLNIIHVAGTKGKGSTCAFTESIL 94 (496)
T ss_pred cccchhHHHHHHHHHHHHhHHHhhhhhhhccCCccccCHHHHHHHHHHhCChhhhhheeEEEEecCCCCcchHHHHHHHH
Confidence 34556799999999999996443211 111122368999999999999866699999999999999999999999999
Q ss_pred HHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEE
Q 007911 99 RECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAII 178 (585)
Q Consensus 99 ~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lTllA~~~F~~~~vd~aVl 178 (585)
+++|+|+|+||||||+++||||+|||+|||++.|++|||+||++++.....+.++|+||+|+|++||++|.+++||+|||
T Consensus 95 r~~g~rtG~yTSPHLl~vrErIriNGqpIS~e~F~~~f~~v~~~lk~~~~~~~~~p~yF~fLT~lAF~~F~~enVdvaVi 174 (496)
T KOG2525|consen 95 RQQGLRTGFYTSPHLLSVRERIRINGQPISEEKFTKYFWEVYERLKSTKLKEVSMPTYFEFLTLLAFHVFVKENVDVAVI 174 (496)
T ss_pred HhcccccccccChhhcchhheEEECCEECCHHHHHHHHHHHHHHHHHhhccccCCCchhhhhHhhhheeeeecCCcEEEE
Confidence 99999999999999999999999999999999999999999999999888788899999999999999999999999999
Q ss_pred eecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccCCCCcEEeeCCchHHHHHHHHHHHhcCccEEE
Q 007911 179 EVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEV 258 (585)
Q Consensus 179 EvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~g~~aV~~~qd~~~~~vl~~~a~~~~~~l~~ 258 (585)
|||+||++|+||+|.+|.+|+||+||+||+++||+|+++|||+||||||.|+|+|+.+|+++++++|+++|.+.++++++
T Consensus 175 EvGlGG~~DaTNvI~kpvvcgITslG~DH~~~LG~tL~eIA~eKAGIfK~gvpaft~~q~~e~~nvL~~ra~e~~~~L~~ 254 (496)
T KOG2525|consen 175 EVGLGGELDATNVIEKPVVCGITSLGLDHTSFLGNTLSEIAWEKAGIFKEGVPAFTVPQPPEALNVLKERASELGVPLFV 254 (496)
T ss_pred EeccccccccccccccceEEEEeecCCchHHHHhhHHHHHHHHhccccccCCceEEcCCcHHHHHHHHHHHHhcCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccchhhhhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCC-cHHHHHHHHhhCCCCCcEEEEeccc
Q 007911 259 AAPLDIEKLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGAD-LPDAFVRGLSTAHLLGRAQIVYDIS 337 (585)
Q Consensus 259 ~~~~~~~~~~~~~l~L~G~hq~~Na~lAia~a~~ll~~~g~~~~~~~~~~~~~~-~~e~i~~gL~~~~~pGR~E~i~~~~ 337 (585)
+++.+...+.+..+++.|.||..|+.+|+.++.+|+...|.+....+....... +|+++..||+++.||||+|++..+
T Consensus 255 v~p~~~~~ls~~~lgl~g~hq~~na~lA~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~GL~~~~wPGR~qil~~~- 333 (496)
T KOG2525|consen 255 VPPLEAYELSGVNLGLIGTHQWSNASLAVQLASEWLIQNGRVAEGVLDALQTSGLIPPAFLSGLASTDWPGRLQILEYG- 333 (496)
T ss_pred cCCchhhhhcCCcccccccchhhhhHHHHHHHHHHHHhcCcccccCCCccccccCCCHHHhcchhhccCCCceEEEecC-
Confidence 988766556667799999999999999999999998766632222221111111 678889999999999999999885
Q ss_pred CCCCCCCccccCCCCeEEEEecCCCHHHHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhcccccccccccccc
Q 007911 338 LVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHA 417 (585)
Q Consensus 338 ~~~~~~~~~~~~~~~~~vilDgAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (585)
++.+|++||||||+||++|.+||++..+..
T Consensus 334 -------------~~~~~llDGAHt~eSaea~~~w~~~~~~~~------------------------------------- 363 (496)
T KOG2525|consen 334 -------------RGVTWLLDGAHTKESAEACAKWFRKAVRGL------------------------------------- 363 (496)
T ss_pred -------------CCcEEEecCCCCHHHHHHHHHHHHHHhccC-------------------------------------
Confidence 468899999999999999999999965431
Q ss_pred ccCccEEEEEecCCCCChhhhhHHHHHHhhhcCCCccEEEEeCCCcccccccCCCC-ccCCCccccchhHHHHHHHHHHH
Q 007911 418 NKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSS-FIPLAISGKDLSWQFSLQRLWER 496 (585)
Q Consensus 418 ~~~~~~ilvFg~~~~Rd~~~ll~~l~~~~~~~~~~fd~~if~~~~~~~~~~~~~~~-~~~~~~~~~~~~~q~~~~~~w~~ 496 (585)
.+..-+||+|+|+++||+..|++.|.. +...+..|+.|+|||+.+.+....+... ..+...+ .++.||..++++|++
T Consensus 364 ~~~~~~illfn~t~~~d~~~Ll~~L~~-~~~~~~~F~~Vvf~Pni~~~~~~~~~d~~~~~~s~~-~~l~~q~~L~~~w~~ 441 (496)
T KOG2525|consen 364 KKLTSLILLFNCTSDRDPPLLLPLLKP-DAVIGTRFSSVVFMPNITSSSPVGSADSISLNTSTE-EQLNWQNDLQSVWEE 441 (496)
T ss_pred CCccceEEEEEecCCcchHhHhHHhcc-ccccccccceEEecccccccCCccchhhhhccCCch-HHHHHhHHHHHHHHH
Confidence 111228999999999999999999987 6666789999999999976665522211 1222322 479999999999999
Q ss_pred hhcCCCCcccccccccccccCCCccccccCCCCCCCCcccCccceecCCHHHHHHHHHhhhhcCCCCcceEEEeCchhch
Q 007911 497 IIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQVLVTGSLHLV 576 (585)
Q Consensus 497 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~ai~~~~~~~~~~~~~~~~VlVTGSlhLV 576 (585)
+..... . ....+.|++||++|++|+|....+ +.+++||||||||
T Consensus 442 l~~~~~--------------------------~------~~~~~~V~~sL~~a~~~Lr~~~~~----s~~~~V~gslhlv 485 (496)
T KOG2525|consen 442 LKESEG--------------------------K------TEDPSIVFGSLYLAYELLRDDQHL----SPRIEVLGSLHLV 485 (496)
T ss_pred HhhcCC--------------------------C------ceeeeeEeccHHHHHHHHHhcCCC----CCeEEEEEEEEEe
Confidence 975321 0 113578999999999999987433 2388888999999
Q ss_pred HhHHhhhcC
Q 007911 577 GDVLKLLKR 585 (585)
Q Consensus 577 G~~l~~l~~ 585 (585)
|+||.+|++
T Consensus 486 g~vl~~l~~ 494 (496)
T KOG2525|consen 486 GGVLVLLDR 494 (496)
T ss_pred chHhhhhhc
Confidence 999999974
No 3
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=100.00 E-value=1e-81 Score=675.21 Aligned_cols=404 Identities=35% Similarity=0.496 Sum_probs=332.4
Q ss_pred CcHHHHHHHHHhhhhhhhcCCCccccccCCChHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCe
Q 007911 26 SSYENAMQALSSLITRQKRGEQSHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRT 105 (585)
Q Consensus 26 ~~y~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~kv 105 (585)
++|+++.+||..+..+...+ .. ..+|+||.++|++||+ |++.+++|||+|||||||||+|+++||+++||||
T Consensus 2 ~~~~~~~~wl~~l~~~~~~~---~i---~~gL~Ri~~ll~~LGn--P~~~~~vIhVaGTNGKGSt~afl~siL~~aG~~V 73 (427)
T COG0285 2 MSLQELAEWLHYLEQLHPKP---GI---DLGLERISRLLERLGN--PQKSPPVIHVAGTNGKGSTCAFLESILREAGYKV 73 (427)
T ss_pred cchHHHHHHHHHHHhcCCCC---cc---cCChHHHHHHHHHcCC--ccccCCeEEEeCCCCchhHHHHHHHHHHHcCCCc
Confidence 57899999999887653221 12 2579999999999994 7789999999999999999999999999999999
Q ss_pred EEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCC-CCCCCHHHHHHHHHHHHhhhCCCcEEEEeecCCC
Q 007911 106 GLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTED-LPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGG 184 (585)
Q Consensus 106 Gl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~-~~~ps~Fe~lTllA~~~F~~~~vd~aVlEvG~gG 184 (585)
|.||||||++|||||+|||++|+++.+.++|+. +++..... ...|+|||++|+|||++|.+.+||++|||||+||
T Consensus 74 G~yTSPHL~~~~ERI~ing~~Isd~~~~~~~~~----ve~~~~~~~~~~~T~FE~~Ta~Af~~F~~~~vD~aIlEVGLGG 149 (427)
T COG0285 74 GVYTSPHLLSFNERIRINGEPISDEELAAAFER----VEEAAGSLDLISLTYFEVLTAMAFLYFAEAKVDVAILEVGLGG 149 (427)
T ss_pred eEECCCccCccceEEEECCEECCHHHHHHHHHH----HHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEeccccc
Confidence 999999999999999999999999999998864 44333221 3569999999999999999999999999999999
Q ss_pred CccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccCCCCcEEeeC-CchHHHHHHHHHHHhcCccEEEecc-c
Q 007911 185 EKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVP-QLSEAMSVLQDRALELMVPLEVAAP-L 262 (585)
Q Consensus 185 r~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~g~~aV~~~-qd~~~~~vl~~~a~~~~~~l~~~~~-~ 262 (585)
|+|+||++. |.++|||||++||+++||+|+++||++||||||+|.|+|+.. +.|+++.++++.|.+.++++..++. +
T Consensus 150 RlDATNVi~-p~vsvIT~I~lDH~~~LG~tie~IA~EKAGI~k~g~P~v~~~~~~p~a~~vi~~~a~~~~~~~~~~~~~~ 228 (427)
T COG0285 150 RLDATNVIE-PDVSVITSIGLDHTAFLGDTLESIAREKAGIIKAGKPAVIGEQQPPEALNVIAERAEELGAPLFVLGPDF 228 (427)
T ss_pred cccchhccC-CceEEEcccChhHHHHhCCcHHHHHHHhhhhccCCCcEEECCCCCHHHHHHHHHHHHhcCCCeeecccch
Confidence 999999995 999999999999999999999999999999999999999987 6688999999999999999887642 1
Q ss_pred c---------hh---hhhcccccCcchh-hHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCCCCCc
Q 007911 263 D---------IE---KLKRLELSLSGDH-QLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAHLLGR 329 (585)
Q Consensus 263 ~---------~~---~~~~~~l~L~G~h-q~~Na~lAia~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~~pGR 329 (585)
. .. ....+.+++.|.| |..||++|++++..+ +.. ...+.|.+||+++.||||
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~lp~l~~~~Q~~NAa~Ai~al~~l----~~~-----------i~~~~i~~gl~~~~wpGR 293 (427)
T COG0285 229 QVLEEGNGFSFQGGGGLLDLPLPLLGGHHQIENAALAIAALEAL----GKE-----------ISEEAIRKGLANVDWPGR 293 (427)
T ss_pred hhccccceEEEecCCeeeeeccccccchhHHHHHHHHHHHHHHh----ccc-----------CCHHHHHHHHHhCcCCce
Confidence 1 11 1235778888888 999999999999987 410 236889999999999999
Q ss_pred EEEEecccCCCCCCCccccCCCCeEEEEecCCCHHHHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhcccccc
Q 007911 330 AQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGH 409 (585)
Q Consensus 330 ~E~i~~~~~~~~~~~~~~~~~~~~~vilDgAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 409 (585)
||++... +.|++||||||+|++++.++|+....
T Consensus 294 ~e~l~~~----------------p~i~lDgAHNp~aa~~La~~l~~~~~------------------------------- 326 (427)
T COG0285 294 LERLSEN----------------PLILLDGAHNPHAARALAETLKTLFN------------------------------- 326 (427)
T ss_pred EEEecCC----------------CeEEEECCCCHHHHHHHHHHHHHHhc-------------------------------
Confidence 9999875 68999999999999999999988732
Q ss_pred ccccccccccCcc-EEEEEecCCCCChhhhhHHHHHHhhhcCCCccEEEEeCCCcccccccCCCCccCCCccccchhHHH
Q 007911 410 KMEKTKHANKISK-QILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQF 488 (585)
Q Consensus 410 ~~~~~~~~~~~~~-~ilvFg~~~~Rd~~~ll~~l~~~~~~~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 488 (585)
..+ +++|||+..|||...++..|.. . ++.+|++.. .|. ++.+. +
T Consensus 327 ----------~~~~~~~v~g~l~dKd~~~~l~~L~~-------~-~~~~~~~~~-~~~------ra~~~----------~ 371 (427)
T COG0285 327 ----------DRPRLTLVFGMLKDKDIAGMLAALLP-------I-VDEIYTTPL-PWP------RALDA----------E 371 (427)
T ss_pred ----------cCCceEEEEEeecCCCHHHHHHHhhc-------c-CcEEEEccC-CCc------ccCCH----------H
Confidence 122 8999999999999999988854 2 667777655 221 22111 1
Q ss_pred HHHHHHHHhhcCCCCcccccccccccccCCCccccccCCCCCCCCcccCccceecCCHHHHHHHHHhhhhcCCCCcceEE
Q 007911 489 SLQRLWERIIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQVL 568 (585)
Q Consensus 489 ~~~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~ai~~~~~~~~~~~~~~~~Vl 568 (585)
.+.+.-.+.. ... .+++++|++++.+.+. .+-.||
T Consensus 372 ~l~~~~~~~~----------------------------------------~~~-~~~~~~a~~~~~~~~~----~~~~il 406 (427)
T COG0285 372 ELLAFAGERG----------------------------------------GVE-LDDVAEALELALEKAD----EDDLVL 406 (427)
T ss_pred HHHHHHHhhc----------------------------------------CCc-cccHHHHHHHHHHhcC----CCCeEE
Confidence 1222111111 001 5689999999887652 144799
Q ss_pred EeCchhchHhHHhhhc
Q 007911 569 VTGSLHLVGDVLKLLK 584 (585)
Q Consensus 569 VTGSlhLVG~~l~~l~ 584 (585)
||||||+||+|++.++
T Consensus 407 V~GSly~~~ev~~~~~ 422 (427)
T COG0285 407 VTGSLYLAGEVLELLK 422 (427)
T ss_pred EEecHHHHHHHHHHhh
Confidence 9999999999999885
No 4
>PLN02913 dihydrofolate synthetase
Probab=100.00 E-value=1e-78 Score=672.28 Aligned_cols=447 Identities=30% Similarity=0.398 Sum_probs=343.7
Q ss_pred cCcHHHHHHHHHhhhhhhhcCCCccccccC----CChHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHH
Q 007911 25 SSSYENAMQALSSLITRQKRGEQSHIAGRY----GKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRE 100 (585)
Q Consensus 25 ~~~y~~a~~~L~~l~~~~~~~~~~~~~~~~----~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~aml~sIL~~ 100 (585)
..+|+++++||.++..+.+.+.+.+. +.. .+|+||+++|++|| +|+.++++|||||||||||||+||++||++
T Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~gL~r~~~ll~~LG--~P~~~~~vIhVaGTNGKGSt~a~l~~iL~~ 99 (510)
T PLN02913 23 EPELGDFLRYLDSLKNYEKSGVPKDA-GTDSDDGFDLGRMRRLMDRLG--NPHSKFKAVHVAGTKGKGSTAAFLSNILRA 99 (510)
T ss_pred CcCHHHHHHHHHhhccccccCCcccc-ccccccCCCHHHHHHHHHHcC--CchhhCcEEEEeCCCchHHHHHHHHHHHHh
Confidence 35799999999999876544433222 222 78999999999999 578889999999999999999999999999
Q ss_pred CCCCeEEEcCCccccccceEEEC--CEecCHHHHHHHHHHHHHhhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEE
Q 007911 101 CGFRTGLFTSPHLIDVRERFRIN--GLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAII 178 (585)
Q Consensus 101 ~G~kvGl~tSPhL~~~rERI~in--G~~is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lTllA~~~F~~~~vd~aVl 178 (585)
+|+|||+||||||.++||||+|| |++|+++.|.++|++|++.+++........|+|||++|++||.+|.+.+||++||
T Consensus 100 aG~~vG~fTSPHl~~~~ERi~in~~g~~is~~~~~~~~~~v~~~~~~~~~~~~~~~T~FE~~T~~A~~~F~~~~vD~aVl 179 (510)
T PLN02913 100 QGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTLNDLFHGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENVDIAVI 179 (510)
T ss_pred cCCCeEEECCCCCceeceEEEECCCCCcCCHHHHHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhCCCCEEEE
Confidence 99999999999999999999999 9999999999999999988765322122358999999999999999999999999
Q ss_pred eecCCCCccccccccC--CcEEEEcCCCcccccccCCCHHHHHHHHhcccCCCCcEEeeC-CchHHHHHHHHHHHhcCcc
Q 007911 179 EVGLGGEKDSTNVIKE--PVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVP-QLSEAMSVLQDRALELMVP 255 (585)
Q Consensus 179 EvG~gGr~D~Tnvi~~--P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~g~~aV~~~-qd~~~~~vl~~~a~~~~~~ 255 (585)
|||+|||+|+||++.. |+++|||||++||+++||+|+|+||++|+||||++.|+|++. +.+++..++++.|++.+++
T Consensus 180 EvGlGGrlDaTNvi~~~~p~vsVITnIg~DH~~~LG~Tle~IA~eKagIik~g~pvV~~~~~~~~~~~vi~~~a~~~~a~ 259 (510)
T PLN02913 180 EAGLGGARDATNVIDSSGLAASVITTIGEEHLAALGGSLESIALAKSGIIKQGRPVVLGGPFLPHIESILRDKASSMNSP 259 (510)
T ss_pred EecCCCCcccccccCCCCCcEEEEccccHHHHhhhcccHHHHHHHHhhhccCCCCEEECCCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999953 599999999999999999999999999999999999999984 6677888888899998988
Q ss_pred EEEec-c-cch--------h----h-----------------hhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccc
Q 007911 256 LEVAA-P-LDI--------E----K-----------------LKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVS 304 (585)
Q Consensus 256 l~~~~-~-~~~--------~----~-----------------~~~~~l~L~G~hq~~Na~lAia~a~~ll~~~g~~~~~~ 304 (585)
++.+. . ++. . . ...+.++|.|.||+.|+++|++++..+ ...+. .
T Consensus 260 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~L~G~hq~~Naa~Alaa~~~L-~~~~~-~--- 334 (510)
T PLN02913 260 VVSASDPGVRSSIKGIITDNGKPCQSCDIVIRVEKDDPLFIELSDVNLRMLGSHQLQNAVTAACAALCL-RDQGW-R--- 334 (510)
T ss_pred EEEeccccccceeecccccCCceeEEeccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHH-HhcCC-C---
Confidence 77652 1 100 0 0 113567899999999999999999875 21121 0
Q ss_pred cCCCCCCCcHHHHHHHHhhCCCCCcEEEEecccCCCCCCCccccCCCCeEEEEecCCCHHHHHHHHHHHHhhhccCCCCC
Q 007911 305 HNDGQGADLPDAFVRGLSTAHLLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSS 384 (585)
Q Consensus 305 ~~~~~~~~~~e~i~~gL~~~~~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilDgAHnp~sl~a~l~~~~~~~~~~~~~~ 384 (585)
...+.+.+||+++.||||||++...+. +... ..++.||+||||||+|+++++++++...
T Consensus 335 -------i~~~~I~~gL~~~~~pGR~E~i~~~~~------~~~~-~~~~~vIlDgAHNp~s~~al~~~L~~~~------- 393 (510)
T PLN02913 335 -------ISDASIRAGLENTNLLGRSQFLTSKEA------EVLG-LPGATVLLDGAHTKESAKALVDTIKTAF------- 393 (510)
T ss_pred -------CCHHHHHHHHHhCCCCCceEEeecccc------cccc-CCCCEEEEECCCCHHHHHHHHHHHHHhc-------
Confidence 235789999999999999999863100 0000 0135899999999999999999997631
Q ss_pred CccccccccccchhHHHhhccccccccccccccccCccEEEEEecCCCCChhhhhHHHHHHhhhcCCCccEEEEeCCCcc
Q 007911 385 LSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVST 464 (585)
Q Consensus 385 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~~~Rd~~~ll~~l~~~~~~~~~~fd~~if~~~~~~ 464 (585)
+..++++|||+++|||...+++.|.... .+|.+++++....
T Consensus 394 ----------------------------------~~~ki~~V~gml~DKd~~~~l~~l~~~~-----~~d~v~~~~~~~~ 434 (510)
T PLN02913 394 ----------------------------------PEARLALVVAMASDKDHLAFASEFLSGL-----KPEAVFLTEADIA 434 (510)
T ss_pred ----------------------------------CCCCEEEEEEccCCCCHHHHHHHHhccc-----CCCEEEEEcCCCC
Confidence 1236899999999999999887764321 3788888765310
Q ss_pred cccccCCCCccCCCccccchhHHHHHHHHHHHhhcCCCCcccccccccccccCCCccccccCCCCCCCCcccCccceecC
Q 007911 465 YSKVTSGSSFIPLAISGKDLSWQFSLQRLWERIIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIP 544 (585)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 544 (585)
. . +.++.+ ...|++.|.+....... .+. ....+.+++
T Consensus 435 ~--~--~~r~~~----------~~~l~~~~~~~~~~~~~-------------------------~~~----~~~~~~~~~ 471 (510)
T PLN02913 435 G--G--KSRSTS----------ASALKEAWIKAAPELGI-------------------------ETL----LAENNSLLK 471 (510)
T ss_pred C--C--CCCCCC----------HHHHHHHHHHhccccCc-------------------------eee----ccccccccC
Confidence 0 0 011111 13456667654210000 000 012456788
Q ss_pred CHHHHHHHHHhhhhcCCCCcceEEEeCchhchHhHHhhhc
Q 007911 545 SLPLTIKWLRDSVQENPSIRVQVLVTGSLHLVGDVLKLLK 584 (585)
Q Consensus 545 si~~ai~~~~~~~~~~~~~~~~VlVTGSlhLVG~~l~~l~ 584 (585)
++++|++.+.+.+.. +....|||||||||||++++.|.
T Consensus 472 ~~~~a~~~~~~~~~~--~~~~~v~v~GSlylv~~v~~~~~ 509 (510)
T PLN02913 472 SLVDASAILRKARTL--DPSSVVCVTGSLHIVSAVLASLQ 509 (510)
T ss_pred CHHHHHHHHHHhccc--CCCCEEEEeCcHHHHHHHHHHhc
Confidence 999999998765421 12246999999999999999875
No 5
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=100.00 E-value=7e-74 Score=616.55 Aligned_cols=382 Identities=40% Similarity=0.577 Sum_probs=309.3
Q ss_pred hHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHH
Q 007911 57 LQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYF 136 (585)
Q Consensus 57 l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f 136 (585)
|+||+++|++|| +|++++++|||||||||||||+|+++||+++|+|||+||||||.++||||+|||.+|+++.|.++|
T Consensus 1 l~r~~~~l~~lg--~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~g~~vg~~tSphl~~~~eri~i~g~~i~~~~~~~~~ 78 (397)
T TIGR01499 1 LERMKKLLEALG--NPQDLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRINGEPISDEELAQAF 78 (397)
T ss_pred ChHHHHHHHHcC--CcHhhCCEEEEeCCCChHHHHHHHHHHHHHcCCCeeEEeCCCcCccceEEEECCEECCHHHHHHHH
Confidence 589999999999 577889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHH
Q 007911 137 WECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLN 216 (585)
Q Consensus 137 ~~v~~~l~~~~~~~~~~ps~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle 216 (585)
++|++..+... ..|++||++|++||++|.+++||++|||||+|||+|+||++ +|+++|||||++||+++||+|+|
T Consensus 79 ~~v~~~~~~~~----~~~~~fe~~t~~A~~~f~~~~~d~~VlEvGlggrld~tn~i-~p~vaViTnI~~DHl~~lG~t~e 153 (397)
T TIGR01499 79 EQVRPILEKLS----QQPTYFELLTLLAFLYFAQAQVDVAVLEVGLGGRLDATNVI-EPLVSVITSIGLDHTEILGDTLE 153 (397)
T ss_pred HHHHHHHHhcc----CCCCHHHHHHHHHHHHHHHCCCCEEEEeecCCCCccccccc-CCCeEEEccccHHHHHHhCccHH
Confidence 99987764321 25999999999999999999999999999999999999999 59999999999999999999999
Q ss_pred HHHHHHhcccCCCCcEEeeCCchHHHHHHHHHHHhcCccEEEecc-c----------chhh----hhcccccCcchhhHh
Q 007911 217 DIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAP-L----------DIEK----LKRLELSLSGDHQLV 281 (585)
Q Consensus 217 ~IA~~KagI~k~g~~aV~~~qd~~~~~vl~~~a~~~~~~l~~~~~-~----------~~~~----~~~~~l~L~G~hq~~ 281 (585)
+||++|++||+++.++|++.|++.+.+++++.+.+.+++++.++. + .... ...+.++++|.||++
T Consensus 154 ~ia~~Ka~I~k~~~~~v~~~d~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~ 233 (397)
T TIGR01499 154 EIAWEKAGIIKEGVPIVTGPQEPEALNVLKKKAQEKGAPLFVVGRDFNYSETDENYLSFSGANLFLEPLALSLLGDHQAE 233 (397)
T ss_pred HHHHHHhCccCCCCCEEEcCCChHHHHHHHHHHHHcCCCEEEeccceeecccccceEEeecccccccccCCCCCCHHHHH
Confidence 999999999999999999999998888888878777777655431 1 1100 013567899999999
Q ss_pred hHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCCCCCcEEEEecccCCCCCCCccccCCCCeEEEEecCC
Q 007911 282 NAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAHLLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAH 361 (585)
Q Consensus 282 Na~lAia~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilDgAH 361 (585)
|+++|++++..+ |... . ...++.+.+||+++.||||||++... ++.+|+||||
T Consensus 234 N~~~Aiaa~~~l----g~~~------~--~i~~~~i~~~L~~~~~pGR~e~i~~~---------------~~~viiD~AH 286 (397)
T TIGR01499 234 NAALALAALEVL----GKQR------P--KLSEEAIRKGLANTIWPGRLEILSED---------------NPNILLDGAH 286 (397)
T ss_pred HHHHHHHHHHHH----Hhcc------C--CCCHHHHHHHHHhCCCCceEEEEecC---------------CCEEEEECCC
Confidence 999999999887 4100 0 01367899999999999999999753 4689999999
Q ss_pred CHHHHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhccccccccccccccccCccEEEEEecCCCCChhhhhHH
Q 007911 362 TAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCMEARHPQVLLPR 441 (585)
Q Consensus 362 np~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~~~Rd~~~ll~~ 441 (585)
||+|+++++++|+... +..+.++||||++|||...+++.
T Consensus 287 Np~a~~~~l~~l~~~~-----------------------------------------~~~~i~~V~G~~~dkd~~~~~~~ 325 (397)
T TIGR01499 287 NPHSAEALAEWFKKRF-----------------------------------------NGRPIILLFGALADKDAAAMLAP 325 (397)
T ss_pred CHHHHHHHHHHHHHhc-----------------------------------------CCCCeEEEEEeeCCCCHHHHHHH
Confidence 9999999999997641 22367899999999999999988
Q ss_pred HHHHhhhcCCCccEEEEeCCCcccccccCCCCccCCCccccchhHHHHHHHHHHHhhcCCCCcccccccccccccCCCcc
Q 007911 442 LVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQFSLQRLWERIIHGADPVLEKSSMKESTEILPPCK 521 (585)
Q Consensus 442 l~~~~~~~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~ 521 (585)
|.+.+. .| +++++.. +.+..+++ + +. +.+...
T Consensus 326 l~~~~~-----~d-~~~~~~~--------~~r~~~~~----~------i~---~~~~~~--------------------- 357 (397)
T TIGR01499 326 LKPVVD-----KE-VFVTPFD--------YPRADDAA----D------LA---ALAETF--------------------- 357 (397)
T ss_pred HhhccC-----cE-EEEECCC--------CCCCCCHH----H------HH---HHHHHc---------------------
Confidence 866431 12 5555543 11111111 1 11 122110
Q ss_pred ccccCCCCCCCCcccCccceecCCHHHHHHHHHhhhhcCCCCcceEEEeCchhchHhHHhhh
Q 007911 522 FLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQVLVTGSLHLVGDVLKLL 583 (585)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~v~~si~~ai~~~~~~~~~~~~~~~~VlVTGSlhLVG~~l~~l 583 (585)
.+.++++..+|++.+. .++ ..-.|||||||||||++++.+
T Consensus 358 -----------------~~~~~~~~~~ai~~a~-~~~----~~d~vlv~GSlyl~~~~~~~~ 397 (397)
T TIGR01499 358 -----------------GKETVEDWREALALAL-NAS----AEDDILVTGSLYLVGEVRKLL 397 (397)
T ss_pred -----------------CceecCCHHHHHHHHH-hCC----CCCEEEEEccHHHHHHHHHhC
Confidence 1346789999998776 332 123699999999999998753
No 6
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=100.00 E-value=1.1e-68 Score=580.08 Aligned_cols=393 Identities=28% Similarity=0.321 Sum_probs=310.8
Q ss_pred CcHHHHHHHHHhhhhhhhcCCCccccccCCChHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCe
Q 007911 26 SSYENAMQALSSLITRQKRGEQSHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRT 105 (585)
Q Consensus 26 ~~y~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~kv 105 (585)
++|++++++|.++..+ +.+++|+||+++|+.|| +|+.++++|||||||||||||+|+++||+++|+||
T Consensus 11 ~~~~~~~~~l~~~~~~----------~~~~~l~~~~~ll~~lg--~p~~~~~~I~VtGTNGKgSt~~~l~~iL~~~G~~v 78 (416)
T PRK10846 11 SPLASWLSYLENLHSK----------TIDLGLERVSQVAARLD--LLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYRV 78 (416)
T ss_pred HHHHHHHHHHHhcccc----------CCCCChHHHHHHHHHhC--CCccCCCEEEEECCCChHHHHHHHHHHHHHcCCCc
Confidence 3688999999888654 12378999999999999 47778899999999999999999999999999999
Q ss_pred EEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeecCCCC
Q 007911 106 GLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGE 185 (585)
Q Consensus 106 Gl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr 185 (585)
|+||||||.+++|||+|||++|+++.|.+++.++.+.... ..|+|||++|++||.+|.+++||++|||||+|||
T Consensus 79 G~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~~~~~~~~------~~~t~fe~~t~~a~~~f~~~~vd~~VlEvglggr 152 (416)
T PRK10846 79 GVYSSPHLVRYTERVRIQGQELPESAHTASFAEIEAARGD------ISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGR 152 (416)
T ss_pred eEECCCCCCCcceEEEECCEECCHHHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCCC
Confidence 9999999999999999999999999999988777654321 2489999999999999999999999999999999
Q ss_pred ccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccCCCCcEEeeCCchHHHHHHHHHHHhcCccEEEecc---c
Q 007911 186 KDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAP---L 262 (585)
Q Consensus 186 ~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~g~~aV~~~qd~~~~~vl~~~a~~~~~~l~~~~~---~ 262 (585)
+|+||++ +|+++|||||++||+++||+|+|+||++|++||+++.++|++.++. ..++.+.|++.+++++.++. +
T Consensus 153 ld~tn~i-~p~vaviTnI~~DHld~lG~t~e~ia~~Ka~Iik~~~~~V~~~~d~--~~~~~~~a~~~~~~~~~~~~~~~~ 229 (416)
T PRK10846 153 LDATNIV-DADVAVVTSIALDHTDWLGPDRESIGREKAGIFRAEKPAVVGEPDM--PSTIADVAQEKGALLQRRGVDWNY 229 (416)
T ss_pred chhhhcc-CCCEEEECCccHHHHHHhcCCHHHHHHHHHhhhcCCCeEEECCccH--hHHHHHHHHHhCCcEEEecceeee
Confidence 9999999 6999999999999999999999999999999999999999886542 23455667777777653221 0
Q ss_pred -------chhhhh--cccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCCCCCcEEEE
Q 007911 263 -------DIEKLK--RLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAHLLGRAQIV 333 (585)
Q Consensus 263 -------~~~~~~--~~~l~L~G~hq~~Na~lAia~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~~pGR~E~i 333 (585)
...... ...++++ .||++|+++|++++..+ +. . ...+.+.+||+++.||||||++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~N~~~Aia~~~~~----~~-~----------i~~~~i~~~L~~~~~~gR~e~~ 293 (416)
T PRK10846 230 SVTDHDWAFSDGDGTLENLPLP-NVPLPNAATALAALRAS----GL-E----------VSEQAIRDGIASAILPGRFQIV 293 (416)
T ss_pred eccCceEEEecCccccccCCcc-chHHHHHHHHHHHHHHc----CC-C----------CCHHHHHHHHHhCCCCceEEEE
Confidence 000000 0124455 57999999999998765 31 0 2368899999999999999999
Q ss_pred ecccCCCCCCCccccCCCCeEEEEecCCCHHHHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhcccccccccc
Q 007911 334 YDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEK 413 (585)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~vilDgAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (585)
... +.+|+||||||+|++++++.++...
T Consensus 294 ~~~----------------~~iI~D~AHNp~a~~~l~~~L~~~~------------------------------------ 321 (416)
T PRK10846 294 SES----------------PRVILDVAHNPHAAEYLTGRLKALP------------------------------------ 321 (416)
T ss_pred cCC----------------CcEEEECCCCHHHHHHHHHHHHHhc------------------------------------
Confidence 754 4699999999999999988776541
Q ss_pred ccccccCccEEEEEecCCCCChhhhhHHHHHHhhhcCCCccEEEEeCCCcccccccCCCCccCCCccccchhHHHHHHHH
Q 007911 414 TKHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQFSLQRL 493 (585)
Q Consensus 414 ~~~~~~~~~~ilvFg~~~~Rd~~~ll~~l~~~~~~~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 493 (585)
+..+.++|||++++||...++..|.+ .++++++++... .+. ... ..+++
T Consensus 322 -----~~~~ii~Vfg~~gdkd~~~~l~~L~~-------~~d~viv~~~~~--------~r~----~~~------~~l~~- 370 (416)
T PRK10846 322 -----KNGRVLAVIGMLHDKDIAGTLACLKS-------VVDDWYCAPLEG--------PRG----ATA------EQLAE- 370 (416)
T ss_pred -----CCCCEEEEEEeeCCCCHHHHHHHHhh-------hCCEEEEECCCC--------CCC----CCH------HHHHH-
Confidence 12468999999999999988777744 357777776431 011 111 11222
Q ss_pred HHHhhcCCCCcccccccccccccCCCccccccCCCCCCCCcccCccceecCCHHHHHHHHHhhhhcCCCCcceEEEeCch
Q 007911 494 WERIIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQVLVTGSL 573 (585)
Q Consensus 494 w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~ai~~~~~~~~~~~~~~~~VlVTGSl 573 (585)
.+. ...+++++++|++++.+.++. + --|||||||
T Consensus 371 --~~~----------------------------------------~~~~~~~~~~Ai~~a~~~a~~--g--D~VLi~GS~ 404 (416)
T PRK10846 371 --HLG----------------------------------------NGKSFDSVAQAWDAAMADAKP--E--DTVLVCGSF 404 (416)
T ss_pred --Hhh----------------------------------------hCcccCCHHHHHHHHHHhcCC--C--CEEEEECcH
Confidence 111 123567899999999876543 1 248999999
Q ss_pred hchHhHHhhhc
Q 007911 574 HLVGDVLKLLK 584 (585)
Q Consensus 574 hLVG~~l~~l~ 584 (585)
|+||++++.++
T Consensus 405 ~~~~~~~~~~~ 415 (416)
T PRK10846 405 HTVAHVMEVID 415 (416)
T ss_pred HHHHHHHHhhc
Confidence 99999999876
No 7
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=100.00 E-value=2.7e-44 Score=394.16 Aligned_cols=292 Identities=21% Similarity=0.191 Sum_probs=222.9
Q ss_pred ChHHHHHHHHHhC---CCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHH
Q 007911 56 KLQRMSMYLKILG---LEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKF 132 (585)
Q Consensus 56 ~l~~~~~~L~~Lg---~~~p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f 132 (585)
.++++++.|..|+ +++|+.++++||||||||||||++||++||+++|+++++++||+ ..|++.+++..
T Consensus 72 ~V~d~~~al~~la~~~~~~~~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~gn~~-------~~i~~~~~~~~-- 142 (460)
T PRK00139 72 IVPDLRKALALLAAAFYGHPSDKLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGTLG-------NGIGGELIPSG-- 142 (460)
T ss_pred EECCHHHHHHHHHHHHhcChhhccEEEEEECCCCchhHHHHHHHHHHHcCCCEEEECCcc-------cccCCeecccC--
Confidence 4677888888887 34677788999999999999999999999999999999999999 45677655321
Q ss_pred HHHHHHHHHhhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeecCC----CCccccccccCCcEEEEcCCCcccc
Q 007911 133 LFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLG----GEKDSTNVIKEPVVCGVTSLGMDHM 208 (585)
Q Consensus 133 ~~~f~~v~~~l~~~~~~~~~~ps~Fe~lTllA~~~F~~~~vd~aVlEvG~g----Gr~D~Tnvi~~P~vavITNIg~DHl 208 (585)
.+++|.+.++.+|..|.+.++|++|+|+|++ +++|.+ +|+++|||||+.||+
T Consensus 143 --------------------~~t~~~~~~~~~l~~~~~~~~~~~VlE~~s~~~~~~~l~~~----~p~iaViTnI~~dHl 198 (460)
T PRK00139 143 --------------------LTTPDALDLQRLLAELVDAGVTYAAMEVSSHALDQGRVDGL----KFDVAVFTNLSRDHL 198 (460)
T ss_pred --------------------CCCcCHHHHHHHHHHHHHCCCCEEEEEcchhhHhhchhcCC----cCCEEEEcCCCcccC
Confidence 1345566666678899999999999999975 355553 579999999999999
Q ss_pred cccCCCHHHHHHHHhcccCCCC-cEEeeCCchHHHHHHHHHHHhc-----CccEEEecc-cchh----hhh-cccccCcc
Q 007911 209 ELLGNTLNDIAFHKAGIFKPQI-PAFTVPQLSEAMSVLQDRALEL-----MVPLEVAAP-LDIE----KLK-RLELSLSG 276 (585)
Q Consensus 209 d~lG~Tle~IA~~KagI~k~g~-~aV~~~qd~~~~~vl~~~a~~~-----~~~l~~~~~-~~~~----~~~-~~~l~L~G 276 (585)
++|| |+|+|+.+|++||+... .+|+|.|++....+... +... ..++....- .... .+. .+.++++|
T Consensus 199 ~~~g-t~e~i~~~K~~i~~~~~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G 276 (460)
T PRK00139 199 DYHG-TMEDYLAAKARLFSELGLAAVINADDEVGRRLLAL-PDAYAVSMAGADLRATDVEYTDSGQTFTLVTEVESPLIG 276 (460)
T ss_pred CcCC-CHHHHHHHHHHHHhcCCCeEEEEcCcHhHHHHHhh-cEEEEecCCCCcEEEEEEEEecCceEEEEEEEEEecccc
Confidence 9999 99999999999999754 78999999876554431 1111 112211000 0000 011 46788999
Q ss_pred hhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCCCCeEE
Q 007911 277 DHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIF 355 (585)
Q Consensus 277 ~hq~~Na~lAia~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~~~~~v 355 (585)
.||++|+++|++++..+ | ..++.+.++|++++ |+||||++... +++.|
T Consensus 277 ~hn~~NalaAia~a~~l----g-------------i~~~~i~~~L~~~~~~~gR~e~~~~~--------------~~~~i 325 (460)
T PRK00139 277 RFNVSNLLAALAALLAL----G-------------VPLEDALAALAKLQGVPGRMERVDAG--------------QGPLV 325 (460)
T ss_pred hhHHHHHHHHHHHHHHc----C-------------CCHHHHHHHHHhCCCCCCCcEEEEcC--------------CCCEE
Confidence 99999999999999987 6 24789999999999 99999999753 35789
Q ss_pred EEecCCCHHHHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhccccccccccccccccCccEEEEEecCCCCCh
Q 007911 356 YLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCMEARHP 435 (585)
Q Consensus 356 ilDgAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~~~Rd~ 435 (585)
|+||||||+|+++++++++.. ..+++++|||++++|+.
T Consensus 326 I~DyahNP~s~~aal~~l~~~------------------------------------------~~~r~i~VlG~g~~k~~ 363 (460)
T PRK00139 326 IVDYAHTPDALEKVLEALRPH------------------------------------------AKGRLICVFGCGGDRDK 363 (460)
T ss_pred EEECCCCHHHHHHHHHHHHhh------------------------------------------cCCcEEEEECCCCCCch
Confidence 999999999999999988654 12478999999888876
Q ss_pred hh--hhHHHHHHhhhcCCCccEEEEeCC
Q 007911 436 QV--LLPRLVSTCASSGTHFSKALFVPS 461 (585)
Q Consensus 436 ~~--ll~~l~~~~~~~~~~fd~~if~~~ 461 (585)
.. ++..+.. ..+|.++++++
T Consensus 364 ~~~~~~~~~~~------~~~d~vi~~~~ 385 (460)
T PRK00139 364 GKRPLMGAIAE------RLADVVIVTSD 385 (460)
T ss_pred hhhHHHHHHHH------HcCCEEEEECC
Confidence 52 3333322 13688888854
No 8
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=6e-42 Score=405.58 Aligned_cols=296 Identities=20% Similarity=0.237 Sum_probs=222.4
Q ss_pred ChHHHHHHHHHhC---CCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHH
Q 007911 56 KLQRMSMYLKILG---LEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKF 132 (585)
Q Consensus 56 ~l~~~~~~L~~Lg---~~~p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f 132 (585)
.++++++.|..|. +.+|+.++++||||||||||||++||++||+++|+++|+++|.. ..+++..+..
T Consensus 89 ~V~d~~~al~~la~~~~~~p~~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~-------~~i~~~~i~~--- 158 (958)
T PRK11929 89 PVADLRKALGELAARWYGRPSEQLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTLG-------ARLDGRLIPG--- 158 (958)
T ss_pred EECCHHHHHHHHHHHHHhChhhccEEEEEECCCccHHHHHHHHHHHHHcCCCEEEECCcc-------ccCCCeeeec---
Confidence 3567778877776 44788889999999999999999999999999999999998854 2234433321
Q ss_pred HHHHHHHHHhhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeecCC----CCccccccccCCcEEEEcCCCcccc
Q 007911 133 LFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLG----GEKDSTNVIKEPVVCGVTSLGMDHM 208 (585)
Q Consensus 133 ~~~f~~v~~~l~~~~~~~~~~ps~Fe~lTllA~~~F~~~~vd~aVlEvG~g----Gr~D~Tnvi~~P~vavITNIg~DHl 208 (585)
....|.++++.++ |..|.+.++|++|||+|++ ||+|.+ +|+++|||||+.||+
T Consensus 159 -----------------~~t~~~~~~~~~~--l~~~~~~~~~~~VlE~ss~~l~~~rl~~~----~p~iaviTnI~~dHl 215 (958)
T PRK11929 159 -----------------SLTTPDAIILHRI--LARMRAAGADAVAMEASSHGLEQGRLDGL----RIAVAGFTNLTRDHL 215 (958)
T ss_pred -----------------CCCCCCHHHHHHH--HHHHHHCCCCEEEEEeccchHhhCccccc----ccCEEEEeCCCcccc
Confidence 1134677777665 5577789999999999853 688875 469999999999999
Q ss_pred cccCCCHHHHHHHHhcccC---CCCcEEeeCCchHHHHHHHHHHHhcCccEEEec---c--------------cchh---
Q 007911 209 ELLGNTLNDIAFHKAGIFK---PQIPAFTVPQLSEAMSVLQDRALELMVPLEVAA---P--------------LDIE--- 265 (585)
Q Consensus 209 d~lG~Tle~IA~~KagI~k---~g~~aV~~~qd~~~~~vl~~~a~~~~~~l~~~~---~--------------~~~~--- 265 (585)
++|| |+|+|+.+|++||+ ++.++|+|.|++.+..++.+.+.......+... + |...
T Consensus 216 ~~~g-t~e~i~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 294 (958)
T PRK11929 216 DYHG-TMQDYEEAKAALFSKLPGLGAAVINADDPAAARLLAALPRGLKVGYSPQNAGADVQARDLRATAHGQVFTLATPD 294 (958)
T ss_pred ccCC-CHHHHHHHHHHHhcCCccCCeEEEECCCHHHHHHHHHcCCCceEEEEeeCCCccEEEEEEEEcCCceEEEEEeCC
Confidence 9999 99999999999998 778899999999876655432211111111100 0 0000
Q ss_pred hhhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEe---cccCCCC
Q 007911 266 KLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVY---DISLVPN 341 (585)
Q Consensus 266 ~~~~~~l~L~G~hq~~Na~lAia~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~---~~~~~~~ 341 (585)
....+.++++|.||++|+++|++++..+ | ..+++|.++|+++. ||||||++. ..
T Consensus 295 ~~~~~~l~l~G~hnv~NalaAia~a~~l----g-------------i~~~~I~~~L~~~~~~~gR~e~i~~~~~~----- 352 (958)
T PRK11929 295 GSYQLVTRLLGRFNVSNLLLVAAALKKL----G-------------LPLAQIARALAAVSPVPGRMERVGPTAGA----- 352 (958)
T ss_pred ceEEEEecCccHhhHHHHHHHHHHHHHc----C-------------CCHHHHHHHHhcCCCCCCCcEEeccccCC-----
Confidence 0113668899999999999999999887 6 24789999999997 999999984 22
Q ss_pred CCCccccCCCCeEEEEecCCCHHHHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhccccccccccccccccCc
Q 007911 342 SSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKIS 421 (585)
Q Consensus 342 ~~~~~~~~~~~~~vilDgAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (585)
+++.+|+||||||+||++++++++.... ++..
T Consensus 353 ---------~~~~vi~DyahnP~s~~a~l~~l~~~~~---------------------------------------~~~~ 384 (958)
T PRK11929 353 ---------QGPLVVVDYAHTPDALAKALTALRPVAQ---------------------------------------ARNG 384 (958)
T ss_pred ---------CCCEEEEECCCCHHHHHHHHHHHHHhcc---------------------------------------cCCC
Confidence 2578999999999999999999875410 1234
Q ss_pred cEEEEEecCCCCChh--hhhHHHHHHhhhcCCCccEEEEeCC
Q 007911 422 KQILLFNCMEARHPQ--VLLPRLVSTCASSGTHFSKALFVPS 461 (585)
Q Consensus 422 ~~ilvFg~~~~Rd~~--~ll~~l~~~~~~~~~~fd~~if~~~ 461 (585)
++|+||||+++||.. .++..+... .+|.++++++
T Consensus 385 r~i~V~g~g~~r~~~~~~~~~~~~~~------~~d~vi~t~~ 420 (958)
T PRK11929 385 RLVCVFGCGGDRDKGKRPEMGRIAAE------LADRVVVTSD 420 (958)
T ss_pred cEEEEECCCCCCCcchhHHHHHHHHH------hCCEEEEcCC
Confidence 689999999988754 555555331 3688888753
No 9
>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional
Probab=100.00 E-value=7.8e-41 Score=368.78 Aligned_cols=278 Identities=17% Similarity=0.201 Sum_probs=200.6
Q ss_pred ChHHHHHHHHHhC---CCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHH
Q 007911 56 KLQRMSMYLKILG---LEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKF 132 (585)
Q Consensus 56 ~l~~~~~~L~~Lg---~~~p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f 132 (585)
.+++++.+|..|+ +.+|+.++++||||||||||||++||++||+..|+++++.++.. ..+++. .|
T Consensus 87 ~V~d~~~al~~la~~~~~~p~~~~~vIgITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~-------~~ig~~-----~~ 154 (481)
T PRK14022 87 IVPDIKKAMSLIAMEFYDNPQHKLKLLAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMNT-------TLDGET-----FF 154 (481)
T ss_pred EECCHHHHHHHHHHHHhcChhhccEEEEEeCCCcHHHHHHHHHHHHHHCCCCEEEEeeee-------eccCCe-----ee
Confidence 4677888888777 44688899999999999999999999999999998766555432 122221 11
Q ss_pred HHHHHHHHHhhhhhccCCCCCC---CHHHHHHHHHHHHhhhCCCcEEEEeecCCC----CccccccccCCcEEEEcCCCc
Q 007911 133 LFYFWECWHLLRENVTEDLPMP---PLFQFLTVLAFKIFVCEQVDVAIIEVGLGG----EKDSTNVIKEPVVCGVTSLGM 205 (585)
Q Consensus 133 ~~~f~~v~~~l~~~~~~~~~~p---s~Fe~lTllA~~~F~~~~vd~aVlEvG~gG----r~D~Tnvi~~P~vavITNIg~ 205 (585)
. ...+.| ++|+++ ..+.+.++|++|||+|++| |+|. + +|+++|||||+.
T Consensus 155 ~---------------~~~~~p~~~~l~~~~-----~~~~e~g~~~~v~EvsS~~~~~~r~~~---~-~pdiaViTNI~~ 210 (481)
T PRK14022 155 K---------------SALTTPESLDLFKMM-----AEAVDNGMTHLIMEVSSQAYLVGRVYG---L-TFDVGVFLNITP 210 (481)
T ss_pred e---------------CCCCCchHHHHHHHH-----HHHHHCCCCEEEEEechhHHHhccccC---c-cccEEEEcCCCc
Confidence 0 111234 334432 2356889999999999764 5554 3 689999999999
Q ss_pred cccccc-CCCHHHHHHHHhcccCCCCcEEeeCCchHHHHHHHHHHHhcCccEEEecc-----------cchhh----hhc
Q 007911 206 DHMELL-GNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAP-----------LDIEK----LKR 269 (585)
Q Consensus 206 DHld~l-G~Tle~IA~~KagI~k~g~~aV~~~qd~~~~~vl~~~a~~~~~~l~~~~~-----------~~~~~----~~~ 269 (585)
||+++| ++|+|+|+.+|++||+++.++|+|.|++.....+. .+. ..++..++. +.... ...
T Consensus 211 DHld~L~~~t~e~~a~aK~~i~~~~~~~Vln~d~d~~~~~~~-~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 287 (481)
T PRK14022 211 DHIGPIEHPTFEDYFYHKRLLMENSKAVVVNSDMDHFSELLE-QVT--PQEHDFYGIDSENQIMASNAFSFEATGKLAGT 287 (481)
T ss_pred ccCCCCCCCCHHHHHHHHHHHhcCCCEEEEEcCCCHHHHHHH-Hhc--CCCEEEEecCCccceEEEEEEEEEEcccCCce
Confidence 999994 24999999999999999999999987333322222 221 122322220 11100 113
Q ss_pred ccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCCCCCcEEEEecccCCCCCCCccccC
Q 007911 270 LELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAHLLGRAQIVYDISLVPNSSGLFENS 349 (585)
Q Consensus 270 ~~l~L~G~hq~~Na~lAia~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~~pGR~E~i~~~~~~~~~~~~~~~~ 349 (585)
+.++++|.||++|+++|++++..+ | ..++.+.+||++..||||||++...
T Consensus 288 ~~l~l~G~hnv~NalaAia~a~~l----g-------------i~~~~i~~~L~~~~~~gR~e~i~~~------------- 337 (481)
T PRK14022 288 YDIQLIGKFNQENAMAAGLACLRL----G-------------ASLEDIQKGIAQTPVPGRMEVLTQS------------- 337 (481)
T ss_pred EEEEEechhhHHHHHHHHHHHHHc----C-------------CCHHHHHHHhccCCCCCCeEEEECC-------------
Confidence 567899999999999999999887 6 2478899999994499999999753
Q ss_pred CCCeEEEEecCCCHHHHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhccccccccccccccccCccEEEEEec
Q 007911 350 SGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNC 429 (585)
Q Consensus 350 ~~~~~vilDgAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~ 429 (585)
+++.+|+||||||+|++++++.++.. +.+++++||||
T Consensus 338 -~g~~vi~DyahNP~s~~aal~~l~~~------------------------------------------~~~r~i~V~G~ 374 (481)
T PRK14022 338 -NGAKVFIDYAHNGDSLNKLIDVVEEH------------------------------------------QKGKLILLLGA 374 (481)
T ss_pred -CCCEEEEECCCCHHHHHHHHHHHhhh------------------------------------------CCCCEEEEECC
Confidence 25789999999999999999988653 12478999999
Q ss_pred CCCCChhhhhHHHHHHh
Q 007911 430 MEARHPQVLLPRLVSTC 446 (585)
Q Consensus 430 ~~~Rd~~~ll~~l~~~~ 446 (585)
+++|+.... +.+.+.+
T Consensus 375 ~~e~g~~~~-~~~~~~~ 390 (481)
T PRK14022 375 AGNKGESRR-PDFGRVA 390 (481)
T ss_pred CCCCCcchh-HHHHHHH
Confidence 999988762 3344444
No 10
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=100.00 E-value=1.7e-40 Score=387.65 Aligned_cols=289 Identities=20% Similarity=0.188 Sum_probs=222.1
Q ss_pred HHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHH
Q 007911 59 RMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWE 138 (585)
Q Consensus 59 ~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~ 138 (585)
-...+++.|--..|..++|+||||||||||||++||++||+++|+++|+++|++ +.||+..+....
T Consensus 462 v~~~Il~~lfp~~~~~~ipiI~VTGTNGKTTTt~mia~IL~~~G~~vG~~tS~G-------~~i~~~~i~~g~------- 527 (864)
T TIGR02068 462 VARAIVDMLFPAEDDGRIPIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDG-------VYIGKYLVEKGD------- 527 (864)
T ss_pred HHHHHHHHhcccCCCCceEEEEEeCCCCHhHHHHHHHHHHHHCCCcEEEecCCc-------eEECCEEEecCC-------
Confidence 345666666434677889999999999999999999999999999999999987 788888764321
Q ss_pred HHHhhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccC-CCHHH
Q 007911 139 CWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLG-NTLND 217 (585)
Q Consensus 139 v~~~l~~~~~~~~~~ps~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG-~Tle~ 217 (585)
...| ..++.+|.+.++|++|+|+|+||++|.++.+.+|+++|||||+.||++++| +|+|+
T Consensus 528 ------------~t~p-------~sa~~~l~~~~vd~aVlE~~~ggil~~gl~~~~pdvaVITNI~~DHL~~~g~~tlE~ 588 (864)
T TIGR02068 528 ------------NTGP-------ASARRILMDPTVDAAVLETARGGILREGLAFDRCDVGVVTNIAGDHLGIGDINTIED 588 (864)
T ss_pred ------------CCCh-------HHHHHHhhCCCCCEEEEEccCCchhhccCCcccccEEEEecCCHHHcCCCCCCCHHH
Confidence 0112 223455788899999999999999999998888999999999999999887 79999
Q ss_pred HHHHHhccc---CCCCcEEeeCCchHHHHHHHHHHHhcCccEEEec--c-cch--------------h---------h--
Q 007911 218 IAFHKAGIF---KPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAA--P-LDI--------------E---------K-- 266 (585)
Q Consensus 218 IA~~KagI~---k~g~~aV~~~qd~~~~~vl~~~a~~~~~~l~~~~--~-~~~--------------~---------~-- 266 (585)
|+.+|++|+ ++++++|+|.||+.+..+ +..+.++++.++ . .+. . .
T Consensus 589 ia~~K~~i~~~i~~~g~~VlNaDd~~~~~~----a~~~~~~vi~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~ 664 (864)
T TIGR02068 589 LADVKRVVVEVVLPDGYAVLNADDPMVAAM----AEKCKGKIAYFSMDPNNPTVAAHIADGGRAVYYENGYIVIARGGDE 664 (864)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCCHHHHHH----HHhCCCCEEEEecCCCChHHHHHHHcCCcEEEEcCCEEEEEecCcc
Confidence 999999995 688899999999876543 233334444332 0 000 0 0
Q ss_pred -----hhcccccCcc--hhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-----CCCcEEEEe
Q 007911 267 -----LKRLELSLSG--DHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-----LLGRAQIVY 334 (585)
Q Consensus 267 -----~~~~~l~L~G--~hq~~Na~lAia~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-----~pGR~E~i~ 334 (585)
...+.+.+.| .||++|+++|++++..+ | ..++.|.+||++|. ||||||++.
T Consensus 665 ~~~~~~~~lpl~~~G~g~~nv~NalaAiaaa~~l----g-------------i~~e~I~~gL~~F~~~~~~~pGR~e~~~ 727 (864)
T TIGR02068 665 VAIARIAAIPLTMGGRVAFQIENALAAVAAAWAL----G-------------VPIELIRAGIRTFDADAAQAPGRFNLFN 727 (864)
T ss_pred ccccceeeeccccCCcccchHHHHHHHHHHHHHc----C-------------CCHHHHHHHHHhccccccCCCCceEEEE
Confidence 0112333445 89999999999999887 6 24689999999985 899999985
Q ss_pred cccCCCCCCCccccCCCCeEEEEecCCCHHHHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhccccccccccc
Q 007911 335 DISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKT 414 (585)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~vilDgAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (585)
.. ++.+|+||||||+|++++++.++..
T Consensus 728 ~~---------------g~~vI~DyAHNP~a~~all~~l~~~-------------------------------------- 754 (864)
T TIGR02068 728 LG---------------GAHVLVDYGHNPAAIEAVGAAIRNW-------------------------------------- 754 (864)
T ss_pred eC---------------CcEEEEEcCCCHHHHHHHHHHHHhc--------------------------------------
Confidence 43 5789999999999999999988654
Q ss_pred cccccCccEEEEEecCCCCChhhhhHHHHHHhhhcCCCccEEEEeCCC
Q 007911 415 KHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSV 462 (585)
Q Consensus 415 ~~~~~~~~~ilvFg~~~~Rd~~~ll~~l~~~~~~~~~~fd~~if~~~~ 462 (585)
+..++++|||+++||+...+. .+.+.+. ..||+++++.+.
T Consensus 755 ----~~~r~i~Vig~~gdr~~~~~~-~lg~~l~---~~~d~vil~~~~ 794 (864)
T TIGR02068 755 ----PARRRIGVIGGPGDRRDEDLV-EQGELLG---GAFDQIILKEDD 794 (864)
T ss_pred ----CCCCEEEEECCCCCCChhHHH-HHHHHHH---HhCCEEEEEeCC
Confidence 124689999999999877654 3334443 248999988764
No 11
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.
Probab=100.00 E-value=1.2e-39 Score=357.69 Aligned_cols=298 Identities=20% Similarity=0.248 Sum_probs=213.2
Q ss_pred ChHHHHHHHHHhC---CCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEec-CHHH
Q 007911 56 KLQRMSMYLKILG---LEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDI-TEDK 131 (585)
Q Consensus 56 ~l~~~~~~L~~Lg---~~~p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~i-s~~~ 131 (585)
.++++.+.|.+|+ +.+|+.++++||||||||||||+.||+++|+..|+++|+++|++ ..+++..+ ..
T Consensus 62 ~v~d~~~al~~la~~~~~~~~~~~~vI~ITGTnGKTTT~~ml~~iL~~~g~~~~~~~t~g-------~~~~~n~~ig~-- 132 (464)
T TIGR01085 62 IVPDLRHALSSLAAAFYGHPSKKLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIG-------YRLGGNDLIKN-- 132 (464)
T ss_pred EECCHHHHHHHHHHHHhCChhHccEEEEEECCCCcHhHHHHHHHHHHHcCCCEEEECccc-------eeECCeeeecC--
Confidence 4566777777776 23566688999999999999999999999999999999999998 33443221 00
Q ss_pred HHHHHHHHHHhhhhhccCCCCCCCHHHHHHHH-HHHHhhhCCCcEEEEeecCC-CCccccccccCCcEEEEcCCCccccc
Q 007911 132 FLFYFWECWHLLRENVTEDLPMPPLFQFLTVL-AFKIFVCEQVDVAIIEVGLG-GEKDSTNVIKEPVVCGVTSLGMDHME 209 (585)
Q Consensus 132 f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lTll-A~~~F~~~~vd~aVlEvG~g-Gr~D~Tnvi~~P~vavITNIg~DHld 209 (585)
+ ...+.|+++++. .+..|.+.++|++|+|+|++ ++......+ +|+++|||||+.||++
T Consensus 133 -----------------p--~~~tt~~~~~~~~~l~~~~~~~~~~~VlE~g~~~~~~~~l~~~-~p~iaviTnI~~dHl~ 192 (464)
T TIGR01085 133 -----------------P--AALTTPEALTLQSTLAEMVEAGAQYAVMEVSSHALAQGRVRGV-RFDAAVFTNLSRDHLD 192 (464)
T ss_pred -----------------c--ccCCCCCHHHHHHHHHHHHHCCCCEEEEEecHHHHhhCCccCc-eeCEEEEccCCCCCCc
Confidence 0 124556666653 34566688999999999965 222222223 7899999999999999
Q ss_pred ccCCCHHHHHHHHhcccCC---CCcEEeeCCchHHHHHHHHHHHhcC------------ccEEEec--------ccchh-
Q 007911 210 LLGNTLNDIAFHKAGIFKP---QIPAFTVPQLSEAMSVLQDRALELM------------VPLEVAA--------PLDIE- 265 (585)
Q Consensus 210 ~lG~Tle~IA~~KagI~k~---g~~aV~~~qd~~~~~vl~~~a~~~~------------~~l~~~~--------~~~~~- 265 (585)
+|| |+|+|+.+|++||+. ++.+|+|.|++....+......... ..+.... .|...
T Consensus 193 ~~g-s~e~i~~~K~~i~~~~~~~g~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (464)
T TIGR01085 193 FHG-TMENYFAAKASLFTELGLKRFAVINLDDEYGAQFVKRLPKDITVSAITQPADGRAQDIKITDSGYSFEGQQFTFET 271 (464)
T ss_pred ccC-CHHHHHHHHHHHhccccCCCeEEEEcCCHHHHHHHHhcCCCeEEEEecCCCccccccEEEEEEEEecCceEEEEEe
Confidence 999 999999999999984 3468999999866443322111000 0110000 00000
Q ss_pred --hhhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCC
Q 007911 266 --KLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNS 342 (585)
Q Consensus 266 --~~~~~~l~L~G~hq~~Na~lAia~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~ 342 (585)
....+.++++|.||++|+++|++++..+ |. ..++.+.++|+++. ++||||++...
T Consensus 272 ~~~~~~~~l~l~G~hn~~NalaAia~a~~l----g~------------i~~e~i~~~L~~~~~~~gR~e~~~~~------ 329 (464)
T TIGR01085 272 PAGEGHLHTPLIGRFNVYNLLAALATLLHL----GG------------IDLEDIVAALEKFRGVPGRMELVDGG------ 329 (464)
T ss_pred CCceEEEEecCccHhHHHHHHHHHHHHHHc----CC------------CCHHHHHHHHHhCCCCCCCcEEEEcC------
Confidence 0113678899999999999999999887 51 13688999999998 99999998753
Q ss_pred CCccccCCCCeEEEEecCCCHHHHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhccccccccccccccccCcc
Q 007911 343 SGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISK 422 (585)
Q Consensus 343 ~~~~~~~~~~~~vilDgAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (585)
++..+|+||||||+||++++++++.. +..+
T Consensus 330 --------~g~~vi~Dy~~NP~s~~aal~~l~~~------------------------------------------~~~r 359 (464)
T TIGR01085 330 --------QKFLVIVDYAHTPDALEKALRTLRKH------------------------------------------KDGR 359 (464)
T ss_pred --------CCCEEEEECCCCHHHHHHHHHHHHhh------------------------------------------CCCc
Confidence 35789999999999999999988653 1236
Q ss_pred EEEEEecCCCCChh--hhhHHHHHHhhhcCCCccEEEEeCC
Q 007911 423 QILLFNCMEARHPQ--VLLPRLVSTCASSGTHFSKALFVPS 461 (585)
Q Consensus 423 ~ilvFg~~~~Rd~~--~ll~~l~~~~~~~~~~fd~~if~~~ 461 (585)
+++|||++++|+.. .+++.+.. ..+|.++++.+
T Consensus 360 ~i~VlGlg~~~~~~~~~~~~~~~~------~~~d~vi~~g~ 394 (464)
T TIGR01085 360 LIVVFGCGGDRDRGKRPLMGAIAE------QLADLVILTSD 394 (464)
T ss_pred EEEEECCCCCCCcchhHHHHHHHH------hcCCEEEEeCC
Confidence 89999988777654 44444432 13688888764
No 12
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.2e-38 Score=345.80 Aligned_cols=281 Identities=21% Similarity=0.256 Sum_probs=218.8
Q ss_pred CCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEE-CCEecCHHHHHHHHHHHHHhhhhhc
Q 007911 69 LEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRI-NGLDITEDKFLFYFWECWHLLRENV 147 (585)
Q Consensus 69 ~~~p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~i-nG~~is~~~f~~~f~~v~~~l~~~~ 147 (585)
|..|..++++|+||||||||||++++.++++..|++++++++-. ..+ .|...
T Consensus 84 y~~ps~~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g-------~~~~~~~~~-------------------- 136 (475)
T COG0769 84 YGLPSGKLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEG-------DELSPGILE-------------------- 136 (475)
T ss_pred ccCcccCceEEEEcCCCcHHHHHHHHHHHHHhcCCceEEEEEEe-------eeccCCccc--------------------
Confidence 55788889999999999999999999999999999999988754 222 12211
Q ss_pred cCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeecCC----CCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHh
Q 007911 148 TEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLG----GEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKA 223 (585)
Q Consensus 148 ~~~~~~ps~Fe~lTllA~~~F~~~~vd~aVlEvG~g----Gr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~Ka 223 (585)
......|+.+.++.+ |..+.+.+++++|||++++ +|.+.+.+ +++++|||+.||+|+|| |+|+|+.+|.
T Consensus 137 ~~~~tTP~~~~l~~~--~~~~~d~~~e~~vmEvssh~l~~~Rv~~~~f----~v~~ftnls~DHlD~h~-t~e~Y~~aK~ 209 (475)
T COG0769 137 PTGLTTPEALDLQNL--LRDLLDRGAEIAVMEVSSHGLVQGRVEGVTF----DVGVFTNLSRDHLDYHG-TMEYYGAAKA 209 (475)
T ss_pred ccCCCCccHHHHHHH--HHHHHHcCCcEEEEEeehhHHHhCCccCceE----EEEeccccCchhhcccC-cHHHHHHHHH
Confidence 112346888888877 7889999999999999998 68888887 68899999999999999 9999999999
Q ss_pred cccC---CCCcEEeeCCchHHHHHHHHHHHhcCccEEEecc-----------cch------------hhhhcccccCcch
Q 007911 224 GIFK---PQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAP-----------LDI------------EKLKRLELSLSGD 277 (585)
Q Consensus 224 gI~k---~g~~aV~~~qd~~~~~vl~~~a~~~~~~l~~~~~-----------~~~------------~~~~~~~l~L~G~ 277 (585)
.+|+ +++.+|+|+|++..... +........+++.++. ++. .....++++|+|.
T Consensus 210 ~lf~~~~~~~~~Vin~dd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~L~G~ 288 (475)
T COG0769 210 VLFESLPHSGEAVINPDDGHGLDY-KERLKNALGDYITYGCDFKRPDLDYRGIEESSSGSDFVFEPSGGIGEYELPLPGL 288 (475)
T ss_pred HHHhhcCCCccEEEccCCchHHHH-HHHHHhcCCCEEEeCCCCchhhhhhccceeeeccceeEEEccCCceeEeccccch
Confidence 9995 56679999999876432 2233333324444331 000 0124578899999
Q ss_pred hhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCCCCeEEE
Q 007911 278 HQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFY 356 (585)
Q Consensus 278 hq~~Na~lAia~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vi 356 (585)
||++|+++|++++..+ | ..+++|+++|++++ ++||||.+..+ ++.++
T Consensus 289 fNv~NaLaA~a~~~~l----G-------------~~~e~i~~~l~~~~~v~GRmE~v~~~---------------~~~v~ 336 (475)
T COG0769 289 FNVYNALAAVAAALAL----G-------------VDLEDILAGLETLKPVPGRMELVNIG---------------GKLVI 336 (475)
T ss_pred hHHHHHHHHHHHHHHc----C-------------CCHHHHHHHHHhcCCCCCcceEecCC---------------CCeEE
Confidence 9999999999999997 7 35799999999999 99999999764 57899
Q ss_pred EecCCCHHHHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhccccccccccccccccCccEEEEEecCCCCChh
Q 007911 357 LDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCMEARHPQ 436 (585)
Q Consensus 357 lDgAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~~~Rd~~ 436 (585)
|||||||+|++++++.++.. ..+++|+||||+||||..
T Consensus 337 VDyAHnPd~le~~L~~~~~~------------------------------------------~~g~li~VfG~gGDrD~~ 374 (475)
T COG0769 337 VDYAHNPDGLEKALRAVRLH------------------------------------------AAGRLIVVFGCGGDRDKS 374 (475)
T ss_pred EEeccChHHHHHHHHHHHhh------------------------------------------cCCcEEEEECccCCCCcc
Confidence 99999999999999988743 134699999999999887
Q ss_pred hhhHHHHHHhhhcCCCccEEEEeCCC
Q 007911 437 VLLPRLVSTCASSGTHFSKALFVPSV 462 (585)
Q Consensus 437 ~ll~~l~~~~~~~~~~fd~~if~~~~ 462 (585)
.+- ++..++. ...|.+|++++.
T Consensus 375 kr~--~mg~ia~--~~ad~vivt~dn 396 (475)
T COG0769 375 KRP--DMGAIAE--QLADIVIVTSDN 396 (475)
T ss_pred ccc--chHHHHH--hcCCcEEEcCCC
Confidence 532 2222221 246777777654
No 13
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=100.00 E-value=1.5e-38 Score=344.70 Aligned_cols=277 Identities=21% Similarity=0.229 Sum_probs=201.4
Q ss_pred ChHHHHHHHHHhC---CCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHH
Q 007911 56 KLQRMSMYLKILG---LEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKF 132 (585)
Q Consensus 56 ~l~~~~~~L~~Lg---~~~p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f 132 (585)
.++++++.|..|+ +.+| ..++|+||||||||||+.||++||+..|+ .++|++ ++++++
T Consensus 53 ~V~d~~~al~~la~~~~~~~--~~~vI~VTGTnGKTTt~~ll~~iL~~~g~---~~~t~g--n~n~~i------------ 113 (417)
T TIGR01143 53 LVDDTLEALQALASAKRAKF--SGKVIGITGSSGKTTTKEMLAAILSHKYK---VFATPG--NFNNEI------------ 113 (417)
T ss_pred EECCHHHHHHHHHHHHHhhC--CCCEEEEcCCCchhHHHHHHHHHHhccCc---EecCCC--cCCCcc------------
Confidence 4667778887776 2233 36899999999999999999999999886 355664 222222
Q ss_pred HHHHHHHHHhhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeecCCCCcc---ccccccCCcEEEEcCCCccccc
Q 007911 133 LFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKD---STNVIKEPVVCGVTSLGMDHME 209 (585)
Q Consensus 133 ~~~f~~v~~~l~~~~~~~~~~ps~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D---~Tnvi~~P~vavITNIg~DHld 209 (585)
+.|. ++ .+.+.++|++|||+|+.+..+ .++.+ +|+++|||||+.||+|
T Consensus 114 -------------------g~p~-----~~----l~~~~~~~~~VlE~g~s~~g~~~~~~~~~-~p~vaviTNi~~dHld 164 (417)
T TIGR01143 114 -------------------GLPL-----TL----LRAPGDHDYAVLEMGASHPGEIAYLAEIA-KPDIAVITNIGPAHLE 164 (417)
T ss_pred -------------------chhH-----HH----hcCCCCCeEEEEEeCCCCCCcHHHHhCcc-CCCEEEEcCCcHHHhh
Confidence 1121 11 145778999999998765444 46666 7999999999999999
Q ss_pred ccCCCHHHHHHHHhcccCC---CCcEEeeCCchHHHHHHHHHHHhcCccEEEec----c---------------cchh--
Q 007911 210 LLGNTLNDIAFHKAGIFKP---QIPAFTVPQLSEAMSVLQDRALELMVPLEVAA----P---------------LDIE-- 265 (585)
Q Consensus 210 ~lG~Tle~IA~~KagI~k~---g~~aV~~~qd~~~~~vl~~~a~~~~~~l~~~~----~---------------~~~~-- 265 (585)
+|| |+|+|+.+|+.||+. +..+|+|.||+....+. +.+. +++++.++ + +...
T Consensus 165 ~~g-s~e~~~~aK~~l~~~~~~~~~~vln~Dd~~~~~~~-~~~~--~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~ 240 (417)
T TIGR01143 165 GFG-SLEGIAEAKGEILQGLKENGIAVINADDPAFAKFA-KRLP--NKAILSFGFEGGDFSAADISYSALGSTGFTLVAP 240 (417)
T ss_pred hcC-CHHHHHHHHHHHHcccCCCCEEEEeCCcHHHHHHH-Hhcc--CCcEEEECCCCCcEEEEEEEEcCCCCEEEEEEeC
Confidence 999 999999999999974 67789999998654332 2221 12222221 0 0000
Q ss_pred -hhhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCC
Q 007911 266 -KLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSS 343 (585)
Q Consensus 266 -~~~~~~l~L~G~hq~~Na~lAia~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~ 343 (585)
....+.++++|.||++|+++|++++..+ | ..++++.++|++++ +||||| +...
T Consensus 241 ~~~~~~~~~l~G~hn~~N~laAia~~~~l----G-------------i~~~~i~~~l~~~~~~~gR~e-~~~~------- 295 (417)
T TIGR01143 241 GGEFEVSLPLLGRHNVMNALAAAALALEL----G-------------IPLEEIAEGLAELKLVKGRFE-IQTK------- 295 (417)
T ss_pred CceEEEEccCCcHHHHHHHHHHHHHHHHc----C-------------CCHHHHHHHHHhCCCCCCcee-EEcC-------
Confidence 0013567899999999999999999987 7 24789999999998 999999 4433
Q ss_pred CccccCCCCeEEEEe-cCCCHHHHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhccccccccccccccccCcc
Q 007911 344 GLFENSSGELIFYLD-GAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISK 422 (585)
Q Consensus 344 ~~~~~~~~~~~vilD-gAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (585)
++..||+| |||||+|+++++++++.. + ++
T Consensus 296 -------~~~~vidDsya~np~s~~~al~~l~~~------------------------------------------~-~r 325 (417)
T TIGR01143 296 -------NGLTLIDDTYNANPDSMRAALDALARF------------------------------------------P-GK 325 (417)
T ss_pred -------CCcEEEEcCCCCCHHHHHHHHHHHHhC------------------------------------------C-CC
Confidence 35789999 999999999999988643 1 36
Q ss_pred EEEEEecC---CCCChhhhhHHHHHHhhhcCCCccEEEEeCCC
Q 007911 423 QILLFNCM---EARHPQVLLPRLVSTCASSGTHFSKALFVPSV 462 (585)
Q Consensus 423 ~ilvFg~~---~~Rd~~~ll~~l~~~~~~~~~~fd~~if~~~~ 462 (585)
+|+||||+ |+|+.. ..+.+.+.+.+. .+|.++++.+.
T Consensus 326 ~i~VlG~~~e~G~~~~~-~~~~l~~~~~~~--~~d~vi~~g~~ 365 (417)
T TIGR01143 326 KILVLGDMAELGEYSEE-LHAEVGRYANSL--GIDLVFLVGEE 365 (417)
T ss_pred EEEEEcCchhcChHHHH-HHHHHHHHHHHc--CCCEEEEECHH
Confidence 89999998 667653 445566655432 36888887643
No 14
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.5e-36 Score=334.18 Aligned_cols=251 Identities=18% Similarity=0.211 Sum_probs=188.9
Q ss_pred cCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCC
Q 007911 74 AELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPM 153 (585)
Q Consensus 74 ~~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~ 153 (585)
.+.++|+||||||||||++||++||+..|.+++..++. |.|+
T Consensus 120 ~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~Gni------------g~~~-------------------------- 161 (480)
T PRK01438 120 RPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAAAVGNI------------GTPV-------------------------- 161 (480)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeEEECCc------------cHHH--------------------------
Confidence 35679999999999999999999999999987654321 1111
Q ss_pred CCHHHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccCCC-CcE
Q 007911 154 PPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQ-IPA 232 (585)
Q Consensus 154 ps~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~g-~~a 232 (585)
.. ......+.|++|+|+|+++. +..+++ +|+++|||||++||+++|| |+|+|+.+|++||+++ ..+
T Consensus 162 ---~~-------~~~~~~~~~~~V~E~ss~~l-~~~~~i-~P~iaVITNI~~DHld~lg-t~e~ia~~K~~I~~~~~~~~ 228 (480)
T PRK01438 162 ---LD-------AVRDPEGYDVLAVELSSFQL-HWSPSV-SPHSAAVLNLAPDHLDWHG-SMEAYAAAKARIYEGTTVAC 228 (480)
T ss_pred ---HH-------HHhcCCCCCEEEEEcChHHh-CcCccc-CCCEEEEecCChhhccccC-CHHHHHHHHHHHHhCCCceE
Confidence 00 01234578999999999854 555666 7999999999999999999 9999999999999976 457
Q ss_pred EeeCCchHHHHHHHHHHHhcCccEEEecc-------cc------------hh--h----hh-cccccCcchhhHhhHHHH
Q 007911 233 FTVPQLSEAMSVLQDRALELMVPLEVAAP-------LD------------IE--K----LK-RLELSLSGDHQLVNAGLA 286 (585)
Q Consensus 233 V~~~qd~~~~~vl~~~a~~~~~~l~~~~~-------~~------------~~--~----~~-~~~l~L~G~hq~~Na~lA 286 (585)
|+|.|++.+..++.+.+.+.+++++.++. +. .. . +. ...++++|.||++|+++|
T Consensus 229 v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aA 308 (480)
T PRK01438 229 VYNVADPATEDLVEEADVVEGARAIGFTLGTPGPSQLGVVDGILVDRAFVEDRQTSALELATLEDLRPAAPHNIANALAA 308 (480)
T ss_pred EEeCCcHHHHHHHhhhcccCCceEEEEeCCCCCCCCceEECCEEEEEeeccccccccceeeeHHHcCCCCHHHHHHHHHH
Confidence 88899998877766555444555443320 00 00 0 00 124789999999999999
Q ss_pred HHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCCCCeEEEEe-cCCCHH
Q 007911 287 VSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLD-GAHTAE 364 (585)
Q Consensus 287 ia~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilD-gAHnp~ 364 (585)
++++..+ | ..++.+.++|++++ |+||||++... ++..+|.| |||||+
T Consensus 309 ia~~~~l----g-------------i~~~~i~~~L~~~~~~~gR~E~i~~~--------------~~~~iiDDs~ahNp~ 357 (480)
T PRK01438 309 AALARSF----G-------------VPPAAVRDGLRAFRPDAHRIEHVADA--------------DGVTWVDDSKATNPH 357 (480)
T ss_pred HHHHHHc----C-------------CCHHHHHHHHHhCCCCCCceEEEEEE--------------CCEEEEecCccCCHH
Confidence 9998876 6 24688999999999 77999999754 23444445 899999
Q ss_pred HHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhccccccccccccccccCccEEEEEe-cCCCCChhhhhHHHH
Q 007911 365 SMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFN-CMEARHPQVLLPRLV 443 (585)
Q Consensus 365 sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg-~~~~Rd~~~ll~~l~ 443 (585)
|++++++.+ .++++||| .+.++|...+++.|.
T Consensus 358 a~~aaL~~l-----------------------------------------------~~i~~I~gG~~~~kd~~~~~~~l~ 390 (480)
T PRK01438 358 AAAASLAAY-----------------------------------------------PSVVWIAGGLAKGADFDDLVRRAA 390 (480)
T ss_pred HHHHHHHhC-----------------------------------------------CCEEEEEecccCCCCHHHHHHHHH
Confidence 999987733 14789996 899999999988775
Q ss_pred HHhhhcCCCccEEEEeC
Q 007911 444 STCASSGTHFSKALFVP 460 (585)
Q Consensus 444 ~~~~~~~~~fd~~if~~ 460 (585)
+ .++++++++
T Consensus 391 ~-------~~~~vi~~g 400 (480)
T PRK01438 391 G-------RLRGVVLIG 400 (480)
T ss_pred h-------hceEEEEEC
Confidence 5 357777773
No 15
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.9e-35 Score=324.07 Aligned_cols=213 Identities=22% Similarity=0.226 Sum_probs=162.2
Q ss_pred CccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCC
Q 007911 75 ELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMP 154 (585)
Q Consensus 75 ~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~p 154 (585)
+.++|+||||||||||++||++||+..|+++.+-++. |.|+
T Consensus 113 ~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~~~gni------------g~~~--------------------------- 153 (460)
T PRK01390 113 DAPFIAITGTNGKSTTTALIAHILREAGRDVQMGGNI------------GTAV--------------------------- 153 (460)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeEEcCcc------------chhh---------------------------
Confidence 4589999999999999999999999999876432210 1110
Q ss_pred CHHHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccCCC--CcE
Q 007911 155 PLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQ--IPA 232 (585)
Q Consensus 155 s~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~g--~~a 232 (585)
+. + ....+.|++|+|+|+.. +|.||++ +|+++|||||+.||+++|| |+|+|+.+|++||++. .++
T Consensus 154 ------~~--~--~~~~~~~~~V~E~~~~~-ld~t~~i-~P~iaVITNI~~DHld~lg-sle~ia~~K~~ii~~~~~~~~ 220 (460)
T PRK01390 154 ------LT--L--EPPPAGRVYVLELSSYQ-IDLAPSL-DPDVGVLLNLTPDHLDRHG-TMEGYAAAKERLFAGQGPDTA 220 (460)
T ss_pred ------hh--c--ccCCCCCEEEEEcCccc-ccccccc-CCCEEEEecCChhHhcccC-CHHHHHHHHHHHHhcCCCCEE
Confidence 00 0 01236799999999875 6999998 7999999999999999999 8999999999999987 789
Q ss_pred EeeCCchHHHHHHHHHHHhcCccEEEecc-cc----h----h---hh-h-----ccc----ccCcchhhHhhHHHHHHHH
Q 007911 233 FTVPQLSEAMSVLQDRALELMVPLEVAAP-LD----I----E---KL-K-----RLE----LSLSGDHQLVNAGLAVSLS 290 (585)
Q Consensus 233 V~~~qd~~~~~vl~~~a~~~~~~l~~~~~-~~----~----~---~~-~-----~~~----l~L~G~hq~~Na~lAia~a 290 (585)
|++.|++.+..+.. .+...+++++.++. .. . . .. . .+. +++.|.||++|+++|++++
T Consensus 221 V~n~dd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aAiaa~ 299 (460)
T PRK01390 221 VIGVDDAYCRAIAD-RLEAAGRRVVRISAGKPLADGVYADGGKLVDARGGRQVEIADLRGIPSLPGAHNAQNAAAAYAAA 299 (460)
T ss_pred EEeCCCHHHHHHHH-hccccCceEEEEeCCCCCcCceEEeCCEEEEecCCCcceeeeHHhhccCCchhHHHHHHHHHHHH
Confidence 99999987766543 33223445544321 00 0 0 00 0 011 4789999999999999999
Q ss_pred HHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCCCCeEEEEe-cCCCHHHHHH
Q 007911 291 ECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLD-GAHTAESMEA 368 (585)
Q Consensus 291 ~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilD-gAHnp~sl~a 368 (585)
..+ | ..++.+.+||+++. ||||||++... ++..||+| |||||+|+++
T Consensus 300 ~~l----g-------------i~~~~i~~gL~~~~~~~gR~e~i~~~--------------~g~~vIdDs~ahNp~s~~~ 348 (460)
T PRK01390 300 RAL----G-------------LSPEEIAAGLASFPGLAHRMEQVGRR--------------GGVLFVNDSKATNADAAAK 348 (460)
T ss_pred HHc----C-------------CCHHHHHHHHHhCCCCCCceEEEeee--------------CCcEEEEcCCCCCHHHHHH
Confidence 887 6 24688999999996 99999999764 24677889 9999999998
Q ss_pred HHH
Q 007911 369 CAK 371 (585)
Q Consensus 369 ~l~ 371 (585)
+++
T Consensus 349 aL~ 351 (460)
T PRK01390 349 ALS 351 (460)
T ss_pred HHH
Confidence 776
No 16
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=4.5e-35 Score=320.03 Aligned_cols=212 Identities=21% Similarity=0.268 Sum_probs=163.2
Q ss_pred CccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCC
Q 007911 75 ELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMP 154 (585)
Q Consensus 75 ~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~p 154 (585)
+.++|+||||||||||++||++||+++|+++.+-++ | +.|
T Consensus 107 ~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggn----------------i------------------------g~p 146 (448)
T PRK03803 107 KAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGN----------------I------------------------GTP 146 (448)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecC----------------c------------------------CHH
Confidence 347999999999999999999999999987654322 1 112
Q ss_pred CHHHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccCCCCcEEe
Q 007911 155 PLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFT 234 (585)
Q Consensus 155 s~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~g~~aV~ 234 (585)
. +. ....+.|++|+|+|+.. +|+++.+ +|+++|||||++||+|+|| |+|+|+.+|++|++++..+|+
T Consensus 147 ~----~~------~~~~~~~~~V~E~ss~~-l~~~~~~-~P~iaVITNI~~DHld~~g-s~e~~~~~K~~i~~~~~~~V~ 213 (448)
T PRK03803 147 A----LD------LLSDDPELYVLELSSFQ-LETTHSL-NAEVATVLNISEDHMDRYS-DLEAYHQAKHRIYRGAKQVVF 213 (448)
T ss_pred H----HH------HhcCCCCEEEEEcChhh-hCcCccc-CccEEEEecCChhHcccCC-CHHHHHHHHHHHHhCCCeEEE
Confidence 1 00 11235799999998863 4788888 7999999999999999999 899999999999998888999
Q ss_pred eCCchHHHHHHHHHHHhcCccEEEec--------------c---cchhh----hhcccccCcchhhHhhHHHHHHHHHHH
Q 007911 235 VPQLSEAMSVLQDRALELMVPLEVAA--------------P---LDIEK----LKRLELSLSGDHQLVNAGLAVSLSECW 293 (585)
Q Consensus 235 ~~qd~~~~~vl~~~a~~~~~~l~~~~--------------~---~~~~~----~~~~~l~L~G~hq~~Na~lAia~a~~l 293 (585)
|.||+.+..+... ..+++.++ . +.... ...+.++++|.||++|+++|++++..+
T Consensus 214 n~dd~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~Hn~~NalaAia~a~~l 288 (448)
T PRK03803 214 NRDDALTRPLVPD-----NQPCLSFGLNAPDFDEWGLREGDGETYLAHGFERLMPVRELKLRGSHNLANALAALALGEAA 288 (448)
T ss_pred eCCCHHHHHHhhc-----CCcEEEEeCCCCCcCceEEEecCCeEEEEeCCceEEehhccCCCCHHHHHHHHHHHHHHHHc
Confidence 9999876554321 12222211 0 00000 112567899999999999999999987
Q ss_pred HHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCCCCeEEEEec-CCCHHHHHHHHH
Q 007911 294 LRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDG-AHTAESMEACAK 371 (585)
Q Consensus 294 l~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilDg-AHnp~sl~a~l~ 371 (585)
| ..++.+.++|++|. ||||||++... ++..||+|+ ||||+|+.++++
T Consensus 289 ----g-------------i~~~~i~~~L~~f~g~~~R~e~v~~~--------------~gv~~idDs~atN~~a~~~al~ 337 (448)
T PRK03803 289 ----G-------------LPKEAMLEVLRTFTGLPHRCEWVREV--------------AGVDYYNDSKGTNVGATVAAIE 337 (448)
T ss_pred ----C-------------CCHHHHHHHHhhCCCCCCceEEEEEe--------------CCeEEEEcCCcCCHHHHHHHHH
Confidence 6 24789999999998 99999999754 357888885 999999999999
Q ss_pred HHHh
Q 007911 372 WFSS 375 (585)
Q Consensus 372 ~~~~ 375 (585)
.+..
T Consensus 338 ~l~~ 341 (448)
T PRK03803 338 GLGA 341 (448)
T ss_pred hhhh
Confidence 7743
No 17
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=2e-35 Score=325.78 Aligned_cols=288 Identities=19% Similarity=0.175 Sum_probs=201.5
Q ss_pred ChHHHHHHHHHhCCC-CcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHH
Q 007911 56 KLQRMSMYLKILGLE-DRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLF 134 (585)
Q Consensus 56 ~l~~~~~~L~~Lg~~-~p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~ 134 (585)
-++++++.|..|+.. ....++++|+||||||||||+.||+++|+..|.+++..++- |+
T Consensus 87 ~V~d~~~al~~la~~~~~~~~~~vIgVTGS~GKTTT~~ml~~iL~~~g~~~~~~g~~-----------n~---------- 145 (479)
T PRK14093 87 VVDDVLAALRDLGRAARARLEAKVIAVTGSVGKTSTKEALRGVLGAQGETHASVASF-----------NN---------- 145 (479)
T ss_pred EECCHHHHHHHHHHHHHHhcCCCEEEEcCCCCccHHHHHHHHHHHhcCCccCCCccC-----------CC----------
Confidence 456778888777621 12246789999999999999999999999999765443321 11
Q ss_pred HHHHHHHhhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeecCC--CCccc-cccccCCcEEEEcCCCccccccc
Q 007911 135 YFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLG--GEKDS-TNVIKEPVVCGVTSLGMDHMELL 211 (585)
Q Consensus 135 ~f~~v~~~l~~~~~~~~~~ps~Fe~lTllA~~~F~~~~vd~aVlEvG~g--Gr~D~-Tnvi~~P~vavITNIg~DHld~l 211 (585)
..+.|. ++ ..+ ..+++++|+|+|+. |+++. +..+ +|+++|||||+.||+|+|
T Consensus 146 ---------------~iG~p~-----~l---~~~-~~~~~~~V~E~g~s~~~e~~~~~~~~-~PdiaViTNI~~DHLd~~ 200 (479)
T PRK14093 146 ---------------HWGVPL-----SL---ARC-PADARFAVFEIGMNHAGEIEPLVKMV-RPHVAIITTVEPVHLEFF 200 (479)
T ss_pred ---------------ccchhH-----HH---HcC-CCCCcEEEEEeCCCCCchHHHHhccc-CCCEEEEcCCCHHHHhhc
Confidence 011121 11 111 35789999999975 44443 4444 799999999999999999
Q ss_pred CCCHHHHHHHHhcccC---CCCcEEeeCCchHHHHHHHHHHHhcCc-cEEEec---c----------------cchh---
Q 007911 212 GNTLNDIAFHKAGIFK---PQIPAFTVPQLSEAMSVLQDRALELMV-PLEVAA---P----------------LDIE--- 265 (585)
Q Consensus 212 G~Tle~IA~~KagI~k---~g~~aV~~~qd~~~~~vl~~~a~~~~~-~l~~~~---~----------------~~~~--- 265 (585)
| |+|+|+.+|..||+ ++..+|+|.||+....+.. .+...+. .++.++ . +...
T Consensus 201 g-t~e~~~~aK~~l~~~~~~~g~~VlN~Dd~~~~~l~~-~~~~~~~~~vi~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (479)
T PRK14093 201 S-GIEAIADAKAEIFTGLEPGGAAVLNRDNPQFDRLAA-SARAAGIARIVSFGADEKADARLLDVALHADCSAVHADILG 278 (479)
T ss_pred C-CHHHHHHHHHHHHccCCCCCEEEEeCCcHHHHHHHH-HhhhccCCcEEEEeCCCCccEEEEEEEEcCCceEEEEEECC
Confidence 9 99999999999994 5678999999987655433 2221111 222221 0 0000
Q ss_pred hhhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCC
Q 007911 266 KLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSG 344 (585)
Q Consensus 266 ~~~~~~l~L~G~hq~~Na~lAia~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~ 344 (585)
....+.++++|.||++|+++|++++..+ | ..+++++++|+++. .+||+|.+....
T Consensus 279 ~~~~~~l~l~G~hnv~NalaAia~a~~l----G-------------i~~~~i~~~l~~~~~~~gR~~~~r~~~------- 334 (479)
T PRK14093 279 HDVTYKLGMPGRHIAMNSLAVLAAAELA----G-------------ADLALAALALSQVQPAAGRGVRHTLEV------- 334 (479)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHHHc----C-------------CCHHHHHHHHHhCCCcCCcceEEEeec-------
Confidence 0113678999999999999999999887 7 24689999999998 999999875320
Q ss_pred ccccCCCCeEEEEe-cCCCHHHHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhccccccccccccccccCccE
Q 007911 345 LFENSSGELIFYLD-GAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQ 423 (585)
Q Consensus 345 ~~~~~~~~~~vilD-gAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (585)
..++..||.| |||||+||+++++++++... .+.+|+
T Consensus 335 ----~~~~~~iIDDsYahnP~s~~aaL~~l~~~~~---------------------------------------~~~~r~ 371 (479)
T PRK14093 335 ----GGGEATLIDESYNANPASMAAALGVLGRAPV---------------------------------------GPQGRR 371 (479)
T ss_pred ----CCCCEEEEECCCCCCHHHHHHHHHHHHhhhc---------------------------------------cCCCCE
Confidence 0023444445 99999999999999987510 023578
Q ss_pred EEEEecCCCC--ChhhhhHHHHHHhhhcCCCccEEEEeC
Q 007911 424 ILLFNCMEAR--HPQVLLPRLVSTCASSGTHFSKALFVP 460 (585)
Q Consensus 424 ilvFg~~~~R--d~~~ll~~l~~~~~~~~~~fd~~if~~ 460 (585)
|+|||.|.++ ....+++.+.+.+.+. .+|.++++.
T Consensus 372 i~V~G~m~elg~~~~~~h~~~~~~~~~~--~~d~v~~~G 408 (479)
T PRK14093 372 IAVLGDMLELGPRGPELHRGLAEAIRAN--AIDLVFCCG 408 (479)
T ss_pred EEEECChHHcCcHHHHHHHHHHHHHHHc--CCCEEEEEc
Confidence 9999997443 2456777887777533 479999985
No 18
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=100.00 E-value=3e-35 Score=322.23 Aligned_cols=280 Identities=20% Similarity=0.260 Sum_probs=197.8
Q ss_pred hHHHHHHHHHhCCC-CcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHH
Q 007911 57 LQRMSMYLKILGLE-DRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFY 135 (585)
Q Consensus 57 l~~~~~~L~~Lg~~-~p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~ 135 (585)
+++++..|..|+.. ......++|+||||||||||+.||++||...|..+ .+++ +++..
T Consensus 80 v~d~~~al~~la~~~~~~~~~~vI~VTGSnGKTTT~~ml~~iL~~~g~~~---~t~g--n~n~~---------------- 138 (453)
T PRK10773 80 VKDTRLAFGQLAAWVRQQVPARVVALTGSSGKTSVKEMTAAILRQCGNTL---YTAG--NLNND---------------- 138 (453)
T ss_pred ECCHHHHHHHHHHHHHhcCCCCEEEEcCCCchHHHHHHHHHHHHhcCccc---ccCc--cccCC----------------
Confidence 34566666666411 11123689999999999999999999999998753 3333 11110
Q ss_pred HHHHHHhhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeecCC--CCccc-cccccCCcEEEEcCCCcccccccC
Q 007911 136 FWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLG--GEKDS-TNVIKEPVVCGVTSLGMDHMELLG 212 (585)
Q Consensus 136 f~~v~~~l~~~~~~~~~~ps~Fe~lTllA~~~F~~~~vd~aVlEvG~g--Gr~D~-Tnvi~~P~vavITNIg~DHld~lG 212 (585)
.+.|.. + + ....++|++|+|+|+. |+++. ++.+ +|+++|||||+.||+|+||
T Consensus 139 ---------------~G~~~~-----~--~--~~~~~~~~~V~E~g~~~~gei~~~~~~~-~p~iaViTNI~~dHld~~g 193 (453)
T PRK10773 139 ---------------IGVPLT-----L--L--RLTPEHDYAVIELGANHQGEIAYTVSLT-RPEAALVNNLAAAHLEGFG 193 (453)
T ss_pred ---------------cccccH-----H--h--cCCCCCcEEEEEcCCCCcchhHHhcCcc-CCCEEEEeCCCHHHHhhcC
Confidence 111210 0 0 0134689999999975 77764 4555 7999999999999999999
Q ss_pred CCHHHHHHHHhcccC---CCCcEEeeCCchHHHHHHHHHHHh-----cC------ccEEEe----cc----cchh---hh
Q 007911 213 NTLNDIAFHKAGIFK---PQIPAFTVPQLSEAMSVLQDRALE-----LM------VPLEVA----AP----LDIE---KL 267 (585)
Q Consensus 213 ~Tle~IA~~KagI~k---~g~~aV~~~qd~~~~~vl~~~a~~-----~~------~~l~~~----~~----~~~~---~~ 267 (585)
|+|+|+.+|+.||+ +++.+|+|.||+....+.. .... .+ +++... .. |... ..
T Consensus 194 -s~e~~~~aK~~l~~~~~~~g~~vln~Dd~~~~~~~~-~~~~~~~~~~g~~~~~~~d~~~~~i~~~~~~~~f~~~~~~~~ 271 (453)
T PRK10773 194 -SLAGVAKAKGEIFSGLPENGIAIMNADSNDWLNWQS-VIGSKTVWRFSPNAANSVDFTATNIHVTSHGTEFTLHTPTGS 271 (453)
T ss_pred -CHHHHHHHHHHHHcccCCCCEEEEECCcHhHHHHHH-HhcCCcEEEEeCCCCCcCcEEEEEEEEeCCeeEEEEEecCce
Confidence 99999999999996 4567899999986543322 1111 00 112110 00 0000 00
Q ss_pred hcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCcc
Q 007911 268 KRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLF 346 (585)
Q Consensus 268 ~~~~l~L~G~hq~~Na~lAia~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~ 346 (585)
..+.++++|.||++|+++|++++..+ | ..++.+.++|+++. ++||||++...
T Consensus 272 ~~~~l~l~G~hnv~NalaAia~a~~l----G-------------i~~~~i~~~L~~~~~~~gR~e~v~~~---------- 324 (453)
T PRK10773 272 VDVLLPLPGRHNIANALAAAALAMSV----G-------------ATLDAVKAGLANLKAVPGRLFPIQLA---------- 324 (453)
T ss_pred EEEEecCCcHhHHHHHHHHHHHHHHc----C-------------CCHHHHHHHHHhCCCCCCceeEEECC----------
Confidence 13678999999999999999999887 7 24688999999998 99999998753
Q ss_pred ccCCCCeEEEEe-cCCCHHHHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhccccccccccccccccCccEEE
Q 007911 347 ENSSGELIFYLD-GAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQIL 425 (585)
Q Consensus 347 ~~~~~~~~vilD-gAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 425 (585)
++..+|.| |||||+||+++++.++.. .+++|+
T Consensus 325 ----~g~~iIDDsYn~nP~s~~aaL~~l~~~-------------------------------------------~~r~i~ 357 (453)
T PRK10773 325 ----EGQLLLDDSYNANVGSMTAAAQVLAEM-------------------------------------------PGYRVM 357 (453)
T ss_pred ----CCeEEEEcCCCCCHHHHHHHHHHHHhC-------------------------------------------CCCEEE
Confidence 35666667 899999999999988653 125799
Q ss_pred EEecCCC--CChhhhhHHHHHHhhhcCCCccEEEEeC
Q 007911 426 LFNCMEA--RHPQVLLPRLVSTCASSGTHFSKALFVP 460 (585)
Q Consensus 426 vFg~~~~--Rd~~~ll~~l~~~~~~~~~~fd~~if~~ 460 (585)
|||.|.+ .+...+++.+.+.+.+. .+|.++++.
T Consensus 358 VlG~m~elG~~~~~~h~~~~~~~~~~--~~d~v~~~G 392 (453)
T PRK10773 358 VVGDMAELGAESEACHRQVGEAAKAA--GIDKVLSVG 392 (453)
T ss_pred EECChhhcchHHHHHHHHHHHHHHHc--CCCEEEEEC
Confidence 9999887 34567778888777543 489998875
No 19
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.5e-34 Score=315.58 Aligned_cols=213 Identities=20% Similarity=0.216 Sum_probs=161.1
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCCC
Q 007911 76 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPP 155 (585)
Q Consensus 76 l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~ps 155 (585)
.++|+||||||||||+.||++||+..|.++.+.++- |.|+..
T Consensus 110 ~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~Gni------------G~~~~~-------------------------- 151 (445)
T PRK04308 110 DKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNI------------GTPVLE-------------------------- 151 (445)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHHHcCCCeEEeCCc------------cHHHHH--------------------------
Confidence 589999999999999999999999999876443321 111100
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccCCCCcEEee
Q 007911 156 LFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTV 235 (585)
Q Consensus 156 ~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~g~~aV~~ 235 (585)
. +..-...++|++|+|+|+ +++|.++.+ +|+++|||||+.||+++|| |+|+|+.+|++|++++..+|+|
T Consensus 152 ---~-----~~~~~~~~~d~~VlE~~~-~~l~~~~~~-~p~iaviTNI~~DHld~~~-t~e~~~~~K~~i~~~~~~~i~n 220 (445)
T PRK04308 152 ---A-----ELQREGKKADVWVLELSS-FQLENTESL-RPTAATVLNISEDHLDRYD-DLLDYAHTKAKIFRGDGVQVLN 220 (445)
T ss_pred ---H-----HHhhcCCCCcEEEEEeCh-HHhCcCccc-CCCEEEEecCChHHhcccC-CHHHHHHHHHHHhcCCCEEEEe
Confidence 0 000013478999999996 577888888 7999999999999999999 9999999999999998899999
Q ss_pred CCchHHHHHHHHHHHhcCccEEEecc-----cc---------hh--hh-hcccccCcchhhHhhHHHHHHHHHHHHHhcC
Q 007911 236 PQLSEAMSVLQDRALELMVPLEVAAP-----LD---------IE--KL-KRLELSLSGDHQLVNAGLAVSLSECWLRRTG 298 (585)
Q Consensus 236 ~qd~~~~~vl~~~a~~~~~~l~~~~~-----~~---------~~--~~-~~~~l~L~G~hq~~Na~lAia~a~~ll~~~g 298 (585)
.|++....+. +.+++++.++. +. .. .+ ..+.++++|.||++|+++|++++..+ |
T Consensus 221 ~dd~~~~~~~-----~~~~~v~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l----g 291 (445)
T PRK04308 221 ADDAFCRAMK-----RAGREVKWFSLEHEADFWLERETGRLKQGNEDLIATQDIPLQGLHNAANVMAAVALCEAV----G 291 (445)
T ss_pred CCcHHHHHHh-----hcCCcEEEecCCCCCceeEeccCCEEEEcCceeeehhccCCcChhhHHHHHHHHHHHHHc----C
Confidence 9987644332 12334433321 00 00 01 12568899999999999999999887 6
Q ss_pred CCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCCCCeEEEEec-CCCHHHHHHHHHHH
Q 007911 299 NWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDG-AHTAESMEACAKWF 373 (585)
Q Consensus 299 ~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilDg-AHnp~sl~a~l~~~ 373 (585)
..++++.++|++|. ||||||++... ++..||.|+ +|||+|++++++.+
T Consensus 292 -------------i~~~~i~~~L~~f~~~~~R~e~~~~~--------------~~~~~iDDs~~~n~~s~~~al~~~ 341 (445)
T PRK04308 292 -------------LPREALLEHVKTFQGLPHRVEKIGEK--------------NGVVFIDDSKGTNVGATAAAIAGL 341 (445)
T ss_pred -------------CCHHHHHHHHhhCCCCCCceEEEEee--------------CCeEEEEcCCCCCHHHHHHHHHhC
Confidence 24788999999997 99999999764 246666665 89999999988743
No 20
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.1e-34 Score=317.64 Aligned_cols=251 Identities=18% Similarity=0.161 Sum_probs=185.8
Q ss_pred CccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCC
Q 007911 75 ELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMP 154 (585)
Q Consensus 75 ~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~p 154 (585)
+.++|+||||||||||++||.+||+..|++++.-+.. |.|++..
T Consensus 108 ~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~~~gni------------G~~~~~~------------------------ 151 (459)
T PRK02705 108 HIPWVGITGTNGKTTVTALLAHILQAAGLNAPACGNI------------GYAACEL------------------------ 151 (459)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeccc------------ChhHHHH------------------------
Confidence 4579999999999999999999999999876542211 2221110
Q ss_pred CHHHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccCCCCcEEe
Q 007911 155 PLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFT 234 (585)
Q Consensus 155 s~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~g~~aV~ 234 (585)
.. +......+.|++|+|+|+ +.+|.++.+ +|+++|||||+.||+++|| |+|+|+.+|++|++++.++|+
T Consensus 152 ---~~-----~~~~~~~~~d~~VlE~~s-~~l~~~~~~-~p~iaVITNI~~DHld~~g-t~e~~~~~K~~i~~~~~~~Vl 220 (459)
T PRK02705 152 ---AL-----LRSGKAQKPDWIVAELSS-YQIESSPEL-APKIGIWTTFTPDHLERHG-TLENYFAIKASLLERSEIRIL 220 (459)
T ss_pred ---Hh-----hhhccCCCCCEEEEEccc-cccccCccc-CCCEEEEecCChhhhcccC-CHHHHHHHHHHHhccCCEEEE
Confidence 00 011124578999999998 578888876 7999999999999999999 999999999999999999999
Q ss_pred eCCchHHHHHHHHHHHhcCccEEEe-c-c---------------cchh---h-hhcccccCcchhhHhhHHHHHHHHHHH
Q 007911 235 VPQLSEAMSVLQDRALELMVPLEVA-A-P---------------LDIE---K-LKRLELSLSGDHQLVNAGLAVSLSECW 293 (585)
Q Consensus 235 ~~qd~~~~~vl~~~a~~~~~~l~~~-~-~---------------~~~~---~-~~~~~l~L~G~hq~~Na~lAia~a~~l 293 (585)
|.|++.+..+..+. ...+.+. . . .... . ....+++++|.||++|+++|++++..+
T Consensus 221 n~dd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l 296 (459)
T PRK02705 221 NGDDPYLRQHRSSW----PKGYWTSTQGKASLLGQADGWILEEGWVVERGEPLFPLSALKMPGAHNLQNLLLAVAAARLA 296 (459)
T ss_pred ECCCHHHHHHHhcC----CceEEeccCCccccccccceeEecCCEEEECCcceeeHHHcCCccHHHHHHHHHHHHHHHHc
Confidence 99998766553221 1111110 0 0 0000 0 011357899999999999999999887
Q ss_pred HHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCCCCeEEEEe-cCCCHHHHHHHHH
Q 007911 294 LRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLD-GAHTAESMEACAK 371 (585)
Q Consensus 294 l~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilD-gAHnp~sl~a~l~ 371 (585)
| ..++.+.++|++|. |+||||++... ++..||+| +||||+|++++++
T Consensus 297 ----g-------------v~~~~i~~~L~~f~~~~gR~e~~~~~--------------~~~~ii~Ds~a~N~~s~~~al~ 345 (459)
T PRK02705 297 ----G-------------LSAEAIAEALRSFPGVPHRLERIGTI--------------NGIDFINDSKATNYDAAEVGLK 345 (459)
T ss_pred ----C-------------CCHHHHHHHHHhCCCCCCceEEEEee--------------CCcEEEEeCCCCCHHHHHHHHH
Confidence 6 24788999999997 99999998754 35789999 7999999999987
Q ss_pred HHHhhhccCCCCCCccccccccccchhHHHhhccccccccccccccccCccEEEEEec-CCCCChhhhhHHHHHHhhhcC
Q 007911 372 WFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNC-MEARHPQVLLPRLVSTCASSG 450 (585)
Q Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~-~~~Rd~~~ll~~l~~~~~~~~ 450 (585)
++. .++++|+|. ..++|...+++.+..
T Consensus 346 ~l~----------------------------------------------~~~i~IlGg~~~~~d~~~~~~~l~~------ 373 (459)
T PRK02705 346 AVP----------------------------------------------GPVILIAGGEAKQGDDSAWLKQIKA------ 373 (459)
T ss_pred hCC----------------------------------------------CCeEEEecCccCCCCHHHHHHHHHh------
Confidence 441 146888874 557888888766532
Q ss_pred CCccEEEEeC
Q 007911 451 THFSKALFVP 460 (585)
Q Consensus 451 ~~fd~~if~~ 460 (585)
..++++++.
T Consensus 374 -~~~~vi~~g 382 (459)
T PRK02705 374 -KAAAVLLFG 382 (459)
T ss_pred -heeEEEEEC
Confidence 357788774
No 21
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=1.7e-34 Score=316.72 Aligned_cols=214 Identities=21% Similarity=0.224 Sum_probs=157.6
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCCC
Q 007911 76 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPP 155 (585)
Q Consensus 76 l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~ps 155 (585)
.++|+||||||||||++|+++||+.+|++...+ +.|.... .+.+.
T Consensus 107 ~~~I~ITGTnGKTTTt~ll~~iL~~~g~~~~~~-------------~gg~~~~----------------------~~~~~ 151 (461)
T PRK00421 107 RTSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFL-------------IGGILNA----------------------AGTNA 151 (461)
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhcCCCCeEE-------------ECceecc----------------------CCccc
Confidence 379999999999999999999999999653222 1221100 00110
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhccc---CCCCcE
Q 007911 156 LFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIF---KPQIPA 232 (585)
Q Consensus 156 ~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~---k~g~~a 232 (585)
...+.|++|+|+|+... .... + +|+++|||||++||+|+|| |+|+|+.+|..|+ +++..+
T Consensus 152 -------------~~~~~~~~V~E~ss~q~-~~~~-~-~p~vaViTNI~~DHld~~g-t~e~y~~ak~k~~~~~~~~~~~ 214 (461)
T PRK00421 152 -------------RLGNSDYFVAEADESDR-SFLK-L-HPDIAIVTNIDADHLDYYG-DFEDLKDAFQEFAHNLPFYGAL 214 (461)
T ss_pred -------------ccCCCCEEEEECCCccc-hHhh-c-CCCEEEEccCChhhccccC-CHHHHHHHHHHHHhcCCCCCEE
Confidence 01367999999987632 1122 3 7999999999999999999 9999998887765 456678
Q ss_pred EeeCCchHHHHHHHHHHHhcCccEEEec-----c--------------cchh----hhhcccccCcchhhHhhHHHHHHH
Q 007911 233 FTVPQLSEAMSVLQDRALELMVPLEVAA-----P--------------LDIE----KLKRLELSLSGDHQLVNAGLAVSL 289 (585)
Q Consensus 233 V~~~qd~~~~~vl~~~a~~~~~~l~~~~-----~--------------~~~~----~~~~~~l~L~G~hq~~Na~lAia~ 289 (585)
|+|.||+.+..+..+. .++++.++ + |... .+..+.++++|.||++|+++|+++
T Consensus 215 V~n~dd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~h~~~N~~aA~a~ 290 (461)
T PRK00421 215 VACGDDPELRELLPRV----SRPVITYGFSEDADFRAENIRQDGGGTHFDVLRRGEVLGDFTLPLPGRHNVLNALAAIAV 290 (461)
T ss_pred EEECCCHHHHHHHHhc----CCCEEEecCCCCCcEEEEEEEEcCCceEEEEEECCceEEEEEecCCcHHHHHHHHHHHHH
Confidence 9999998766554322 23333221 0 0000 011366789999999999999999
Q ss_pred HHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCCCCeEEEEecCCCHHHHHH
Q 007911 290 SECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEA 368 (585)
Q Consensus 290 a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilDgAHnp~sl~a 368 (585)
+..+ | ..++++.++|++|. |+||||++... +++.||+||||||+++++
T Consensus 291 ~~~l----g-------------v~~~~i~~~l~~f~~~~~R~e~~~~~--------------~g~~~i~D~aHnp~~~~a 339 (461)
T PRK00421 291 ALEL----G-------------IDDEAIREALATFKGVKRRFEEKGEV--------------GGVVLIDDYAHHPTEIKA 339 (461)
T ss_pred HHHc----C-------------CCHHHHHHHHHhCCCCCcccEEEEec--------------CCcEEEEeCCCCHHHHHH
Confidence 9887 6 24788999999997 99999999764 357899999999999999
Q ss_pred HHHHHHhh
Q 007911 369 CAKWFSSV 376 (585)
Q Consensus 369 ~l~~~~~~ 376 (585)
+++.++..
T Consensus 340 ~~~al~~~ 347 (461)
T PRK00421 340 TLKAARQG 347 (461)
T ss_pred HHHHHHhh
Confidence 99988764
No 22
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.6e-34 Score=314.75 Aligned_cols=211 Identities=18% Similarity=0.240 Sum_probs=162.9
Q ss_pred CccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCC
Q 007911 75 ELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMP 154 (585)
Q Consensus 75 ~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~p 154 (585)
+.++|+||||||||||++||++||+..|++++..++.+ .|
T Consensus 104 ~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gnig----------------------------------------~p 143 (438)
T PRK03806 104 QAPIVAITGSNGKSTVTTLVGEMAKAAGWKVGVGGNIG----------------------------------------LP 143 (438)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEeCCcc----------------------------------------hh
Confidence 34799999999999999999999999999876543211 12
Q ss_pred CHHHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccCCCCcEEe
Q 007911 155 PLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFT 234 (585)
Q Consensus 155 s~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~g~~aV~ 234 (585)
. + .....+.|++|+|+|+.+ +|.++.+ +|+++|||||+.||+|+||+|+|+|+.+|++|++....+|+
T Consensus 144 ~----~------~~~~~~~~~~V~E~ss~~-l~~~~~~-~p~iaViTNI~~DHld~~g~s~e~~~~~K~~i~~~~~~~v~ 211 (438)
T PRK03806 144 A----L------SLLDQECELYVLELSSFQ-LETTSSL-KAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVV 211 (438)
T ss_pred H----H------HhhccCCCEEEEEccchh-hccCccc-CCCEEEEecCcHHHhccccCCHHHHHHHHHHHHhCCCeEEE
Confidence 1 0 012456799999998874 4678887 69999999999999999977999999999999998888999
Q ss_pred eCCchHHHHHHHHHHHhcCccEEEec----cc----------ch-hh---hhcccccCcchhhHhhHHHHHHHHHHHHHh
Q 007911 235 VPQLSEAMSVLQDRALELMVPLEVAA----PL----------DI-EK---LKRLELSLSGDHQLVNAGLAVSLSECWLRR 296 (585)
Q Consensus 235 ~~qd~~~~~vl~~~a~~~~~~l~~~~----~~----------~~-~~---~~~~~l~L~G~hq~~Na~lAia~a~~ll~~ 296 (585)
|.||+.+..+.. . ..++..++ ++ .. .. +..++++++|.||++|+++|++++..+
T Consensus 212 n~dd~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~a~~l--- 283 (438)
T PRK03806 212 NADDALTMPIRG-A----DKRCVSFGVNMGDYHLNRQQGETWLRVKGEKVLNTKEMKLSGQHNYTNALAALALADAV--- 283 (438)
T ss_pred eCCCHHHHHHhc-C----CceEEEEecCCCceEEEecCCeEEEEecCceeeehhhcCCcccccHHHHHHHHHHHHHc---
Confidence 999987655321 1 11222211 00 00 00 113567899999999999999999887
Q ss_pred cCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCCCCeEEEEe-cCCCHHHHHHHHHHH
Q 007911 297 TGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLD-GAHTAESMEACAKWF 373 (585)
Q Consensus 297 ~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilD-gAHnp~sl~a~l~~~ 373 (585)
| ..++++.++|++|. |+||||++... ++..+|+| +||||+|++++++.+
T Consensus 284 -g-------------i~~~~i~~~L~~f~~~~gR~E~v~~~--------------~~~~~i~Ds~a~n~~a~~~al~~l 334 (438)
T PRK03806 284 -G-------------IPRASSLKALTTFTGLPHRFQLVLEH--------------NGVRWINDSKATNVGSTEAALNGL 334 (438)
T ss_pred -C-------------CCHHHHHHHHHhCCCCCCeEEEEEee--------------CCEEEEEcCCCCCHHHHHHHHHhC
Confidence 6 24689999999997 99999998754 35778877 799999999999855
No 23
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=5.3e-34 Score=337.94 Aligned_cols=284 Identities=19% Similarity=0.151 Sum_probs=203.1
Q ss_pred ChHHHHHHHHHhCCC-CcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHH
Q 007911 56 KLQRMSMYLKILGLE-DRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLF 134 (585)
Q Consensus 56 ~l~~~~~~L~~Lg~~-~p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~ 134 (585)
.++++++.|..|+.. ....+.++|+||||||||||+.||++||+.+|.+.+.+.|++. ++
T Consensus 582 ~V~d~~~al~~la~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~~~~~~~~~t~gn--~n----------------- 642 (958)
T PRK11929 582 VVDDTRAALGRLATAWRARFSLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGN--FN----------------- 642 (958)
T ss_pred EeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCchHHHHHHHHHHHHhcCCCCcEEccCcc--cC-----------------
Confidence 457778888877721 1123568999999999999999999999999777666666651 10
Q ss_pred HHHHHHHhhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeecCC--CCccccccccCCcEEEEcCCCcccccccC
Q 007911 135 YFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLG--GEKDSTNVIKEPVVCGVTSLGMDHMELLG 212 (585)
Q Consensus 135 ~f~~v~~~l~~~~~~~~~~ps~Fe~lTllA~~~F~~~~vd~aVlEvG~g--Gr~D~Tnvi~~P~vavITNIg~DHld~lG 212 (585)
...+.| ++++ -.+.++|++|+|+|++ |+++.+.-+.+|+++|||||+.||+|+||
T Consensus 643 --------------~~~g~~-----~~l~----~~~~~~~~~VlE~s~~~~g~~~~~~~~~~pdiaViTNI~~dHLd~~~ 699 (958)
T PRK11929 643 --------------NEIGVP-----LTLL----RLRAQHRAAVFELGMNHPGEIAYLAAIAAPTVALVTNAQREHQEFMH 699 (958)
T ss_pred --------------CCcchH-----HHHh----cCCCCCcEEEEEeCCCCCccHHHHhCccCCCEEEEcCCcHHHhhhcC
Confidence 001112 1111 1256789999999987 56665433337999999999999999999
Q ss_pred CCHHHHHHHHhcccC---CCCcEEeeCCchHHHHHHHHHHHhcCccEEEec-----cc------------chh-------
Q 007911 213 NTLNDIAFHKAGIFK---PQIPAFTVPQLSEAMSVLQDRALELMVPLEVAA-----PL------------DIE------- 265 (585)
Q Consensus 213 ~Tle~IA~~KagI~k---~g~~aV~~~qd~~~~~vl~~~a~~~~~~l~~~~-----~~------------~~~------- 265 (585)
|+|+|+.+|+.||+ ++..+|+|.|++....+. +.+.. ..++.++ ++ ...
T Consensus 700 -s~e~y~~aK~~i~~~~~~~~~~Vln~Dd~~~~~~~-~~~~~--~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (958)
T PRK11929 700 -SVEAVARAKGEIIAALPEDGVAVVNGDDPYTAIWA-KLAGA--RRVLRFGLQPGADVYAEKIAKDISVGEAGGTRCQVV 775 (958)
T ss_pred -CHHHHHHHHHHHHccCCCCCEEEEECCcHHHHHHH-HhhcC--CcEEEEeCCCCcceEeeecccceeecCCCceEEEEE
Confidence 89999999999995 567789999998654332 22211 1111111 00 000
Q ss_pred ---hhhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCC
Q 007911 266 ---KLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPN 341 (585)
Q Consensus 266 ---~~~~~~l~L~G~hq~~Na~lAia~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~ 341 (585)
....+.++++|.||++|+++|++++..+ | ..++++.++|++|. +|||||.+...
T Consensus 776 ~~~~~~~~~l~l~G~hnv~NalaAia~a~~l----G-------------i~~~~i~~~L~~f~~~~gR~e~~~~~----- 833 (958)
T PRK11929 776 TPAGSAEVYLPLIGEHNLRNALAAIACALAA----G-------------ASLKQIRAGLERFQPVAGRMQRRRLS----- 833 (958)
T ss_pred ECCceEEEEeCCCcHHHHHHHHHHHHHHHHc----C-------------CCHHHHHHHHhhCCCCCCCceEEEcC-----
Confidence 0013568899999999999999999887 7 24789999999998 99999998754
Q ss_pred CCCccccCCCCeEEEEe-cCCCHHHHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhccccccccccccccccC
Q 007911 342 SSGLFENSSGELIFYLD-GAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKI 420 (585)
Q Consensus 342 ~~~~~~~~~~~~~vilD-gAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (585)
++..||+| |||||+|++++++.|+.. +.
T Consensus 834 ---------~~~~iidDsya~np~s~~aaL~~l~~~------------------------------------------~~ 862 (958)
T PRK11929 834 ---------CGTRIIDDTYNANPDSMRAAIDVLAEL------------------------------------------PN 862 (958)
T ss_pred ---------CCcEEEEcCCCCCHHHHHHHHHHHHhc------------------------------------------cC
Confidence 35788899 899999999999988654 11
Q ss_pred ccEEEEEecCCC-CChhhhh-HHHHHHhhhcCCCccEEEEeC
Q 007911 421 SKQILLFNCMEA-RHPQVLL-PRLVSTCASSGTHFSKALFVP 460 (585)
Q Consensus 421 ~~~ilvFg~~~~-Rd~~~ll-~~l~~~~~~~~~~fd~~if~~ 460 (585)
+++|+|||++++ +|..... +.+.+.+.+. .++.++++.
T Consensus 863 ~~~i~VlG~~~e~g~~~~~~h~~~g~~~~~~--~~~~vi~~G 902 (958)
T PRK11929 863 GPRALVLGDMLELGDNGPAMHREVGKYARQL--GIDALITLG 902 (958)
T ss_pred CCEEEEECCchhcCcHHHHHHHHHHHHHHHc--CCCEEEEEC
Confidence 468999999987 5665543 5555554332 367777763
No 24
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.1e-33 Score=311.05 Aligned_cols=231 Identities=19% Similarity=0.241 Sum_probs=166.5
Q ss_pred hHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHH
Q 007911 57 LQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYF 136 (585)
Q Consensus 57 l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f 136 (585)
++.+.++++.|+. +....++|+||||||||||++||++||+.+|+++++.++ +....+.
T Consensus 104 ~e~~~~~~~~l~~--~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~~~~Gn----------------i~~~~~~--- 162 (498)
T PRK02006 104 IELFAQALAALGA--SGYAPKVLAITGTNGKTTTTALTGLLCERAGKKVAVAGN----------------ISPAALD--- 162 (498)
T ss_pred HHHHHHHHhhhcc--ccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCEEEECC----------------CCHHHHH---
Confidence 3444555555552 333458999999999999999999999999999876332 1111110
Q ss_pred HHHHHhhhhhccCCCCCCCHHHHHHHHHHHHhhhCC--CcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCC
Q 007911 137 WECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQ--VDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNT 214 (585)
Q Consensus 137 ~~v~~~l~~~~~~~~~~ps~Fe~lTllA~~~F~~~~--vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~T 214 (585)
.+......+ .|++|+|+|+.+ ++.++.+ +|+++|||||+.||+|+|| |
T Consensus 163 ---------------------------~~~~~~~~~~~~~~~V~E~ss~~-l~~~~~~-~p~iaviTNI~~DHld~~g-s 212 (498)
T PRK02006 163 ---------------------------KLMEAIDAGALPDVWVLELSSFQ-LETTHTL-APDAATVLNITQDHLDWHG-S 212 (498)
T ss_pred ---------------------------HHHHhhccCCCCcEEEEEccHHH-hCccccc-CCCEEEEcCCChhhhcccC-C
Confidence 001111222 489999998864 3556666 7999999999999999999 8
Q ss_pred HHHHHHHHhcccCCCCcEEeeCCchHHHHHHHHHHHhcCccEEEec--------cc-----c-----hh-----------
Q 007911 215 LNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAA--------PL-----D-----IE----------- 265 (585)
Q Consensus 215 le~IA~~KagI~k~g~~aV~~~qd~~~~~vl~~~a~~~~~~l~~~~--------~~-----~-----~~----------- 265 (585)
+|+|+.+|++||+++..+|+|.||+.+..+..+.+. ..+..++ .+ . ..
T Consensus 213 ~e~y~~aK~~i~~~~~~~Vln~dd~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (498)
T PRK02006 213 MAAYAAAKARIFGPRTVRVLNRDDARVMAMAPPGGA---ADAVTFGLDEPAADGDYGLLRDNGMAWLVEAEDRDAADPAP 289 (498)
T ss_pred HHHHHHHHHHHcCCCCEEEEeCCCHHHHHHhhccCC---ccEEEEeCCCccccccceEEecCCeEEEEecCccccccccc
Confidence 999999999999988889999999876654432111 1111110 00 0 00
Q ss_pred -----------------h-hhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-C
Q 007911 266 -----------------K-LKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-L 326 (585)
Q Consensus 266 -----------------~-~~~~~l~L~G~hq~~Na~lAia~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~ 326 (585)
. ...+.++++|.||++|+++|++++..+ | ..++.+.++|++|. |
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~l----g-------------i~~~~i~~aL~~f~~~ 352 (498)
T PRK02006 290 SRRRKKDAAPPPDIRLKRLMPADALRIRGLHNAANALAALALARAI----G-------------LPAAPLLHGLREYRGE 352 (498)
T ss_pred ccccccccccccccchhceeeHhhcCCCcHHHHHHHHHHHHHHHHc----C-------------CCHHHHHHHHhhCCCC
Confidence 0 001357899999999999999999887 6 24789999999997 9
Q ss_pred CCcEEEEecccCCCCCCCccccCCCCeEEEEec-CCCHHHHHHHHHH
Q 007911 327 LGRAQIVYDISLVPNSSGLFENSSGELIFYLDG-AHTAESMEACAKW 372 (585)
Q Consensus 327 pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilDg-AHnp~sl~a~l~~ 372 (585)
+||||++... ++..||.|+ +|||+|+.++++.
T Consensus 353 ~gR~e~~~~~--------------~g~~~idDs~~tn~~s~~~al~~ 385 (498)
T PRK02006 353 PHRVELVATI--------------DGVDYYDDSKGTNVGATVAALDG 385 (498)
T ss_pred CCceEEEEEE--------------CCEEEEEcCCCCCHHHHHHHHHh
Confidence 9999999754 357788885 8999999988874
No 25
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=100.00 E-value=1.9e-33 Score=307.45 Aligned_cols=215 Identities=20% Similarity=0.277 Sum_probs=157.9
Q ss_pred cEEEEecCCCCchHHHHHHHHHHHCCCCeEEE--cCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCC
Q 007911 77 KVIHVSGTKGKGSTCTFCEAILRECGFRTGLF--TSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMP 154 (585)
Q Consensus 77 ~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~--tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~p 154 (585)
++|+||||||||||++||++||+..|++++.+ +++. .++.|
T Consensus 103 ~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~~~~g-------------------------------------n~G~~ 145 (448)
T TIGR01081 103 WVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPG-------------------------------------NFGVS 145 (448)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeCcccc-------------------------------------cCccc
Confidence 39999999999999999999999999987532 1111 01122
Q ss_pred CHHHHHHHHHHHHhhhCCCcEEEEeecCC--CCccc-cccc-cCCcEEEEcCCCcccccccCCCHHHHHHHHhcccC--C
Q 007911 155 PLFQFLTVLAFKIFVCEQVDVAIIEVGLG--GEKDS-TNVI-KEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFK--P 228 (585)
Q Consensus 155 s~Fe~lTllA~~~F~~~~vd~aVlEvG~g--Gr~D~-Tnvi-~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k--~ 228 (585)
. . . ...|++|+|+|+. +..+. ..+. .+|+++|||||+.||+|+|+ |+|+|+.+|++||+ +
T Consensus 146 ~----------~--~-~~~~~~V~E~~s~~~~~~~~l~~~~~~~P~iaVITNI~~DHld~~~-t~e~~~~~K~~i~~~~~ 211 (448)
T TIGR01081 146 A----------R--L-GESPFFVIEADEYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIFD-DLKAIQRQFHHLVRTVP 211 (448)
T ss_pred c----------c--c-CCCCEEEEEccCcCccccccccceeecCCCEEEEeCCChHhccccC-CHHHHHHHHHHHHHhCC
Confidence 1 0 0 2469999999886 33221 1121 27999999999999999998 99999999999998 3
Q ss_pred -CCcEEeeCCchHHHHHHHHHHHhcCccEEEec---c------------cchh----hhhcccccCcchhhHhhHHHHHH
Q 007911 229 -QIPAFTVPQLSEAMSVLQDRALELMVPLEVAA---P------------LDIE----KLKRLELSLSGDHQLVNAGLAVS 288 (585)
Q Consensus 229 -g~~aV~~~qd~~~~~vl~~~a~~~~~~l~~~~---~------------~~~~----~~~~~~l~L~G~hq~~Na~lAia 288 (585)
...+|+|.||+.+..++.+.+ ...+..++ + +... ....+.++++|.||+.|+++|++
T Consensus 212 ~~~~~i~n~dd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~~A~a 288 (448)
T TIGR01081 212 GEGLILCPGRDQSLKDTLAKGC---WSEQEFFGEQGEWQAEKITADGSHFDVLLDGEKVGEVKWSLVGRHNMHNALMAIA 288 (448)
T ss_pred CCCEEEEeCCCHHHHHHHHhcc---CCCeEEECCCCCEEEEEEecCCcEEEEEECCceeEEEEecCCcHHHHHHHHHHHH
Confidence 356788999887665544322 11111110 0 0000 01135678999999999999999
Q ss_pred HHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCCCCeEEEEecCCCHHHHH
Q 007911 289 LSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESME 367 (585)
Q Consensus 289 ~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilDgAHnp~sl~ 367 (585)
++..+ | ..++.+.++|++|. |+||||++... +++.||+|+||||+|++
T Consensus 289 ~~~~l----g-------------i~~~~i~~~L~~~~~~~~R~e~~~~~--------------~g~~ii~D~ahNp~s~~ 337 (448)
T TIGR01081 289 AARHV----G-------------VAIEDACEALGSFVNAKRRLELKGEA--------------NGITVYDDFAHHPTAIE 337 (448)
T ss_pred HHHHc----C-------------CCHHHHHHHHHhCCCCCcceEEEEec--------------CCeEEEEeCCCCHHHHH
Confidence 99887 6 24678999999997 89999998653 35789999999999999
Q ss_pred HHHHHHHhh
Q 007911 368 ACAKWFSSV 376 (585)
Q Consensus 368 a~l~~~~~~ 376 (585)
+++++|+..
T Consensus 338 ~~l~~l~~~ 346 (448)
T TIGR01081 338 ATLQGLRQK 346 (448)
T ss_pred HHHHHHHHh
Confidence 999998754
No 26
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.8e-33 Score=305.51 Aligned_cols=212 Identities=19% Similarity=0.214 Sum_probs=157.1
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCCC
Q 007911 76 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPP 155 (585)
Q Consensus 76 l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~ps 155 (585)
.++|+||||||||||++||.+||+..|+++++.++- |.|+..
T Consensus 108 ~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~i------------g~~~~~-------------------------- 149 (450)
T PRK14106 108 APIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGNI------------GYPLID-------------------------- 149 (450)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCcc------------cHHHHH--------------------------
Confidence 689999999999999999999999999876543321 111100
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccCCC---CcE
Q 007911 156 LFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQ---IPA 232 (585)
Q Consensus 156 ~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~g---~~a 232 (585)
.. . ...+.|++|+|+|+.+.- ...++ +|+++|||||+.||+++|| |+|+|+.+|++||++. ..+
T Consensus 150 --~~------~--~~~~~~~~v~E~~~~~~~-~~~~~-~P~i~VITnI~~dHl~~~g-t~e~ia~~K~~i~~~~~~~~~~ 216 (450)
T PRK14106 150 --AV------E--EYGEDDIIVAEVSSFQLE-TIKEF-KPKVGCILNITPDHLDRHK-TMENYIKAKARIFENQRPSDYT 216 (450)
T ss_pred --HH------h--cCCCCCEEEEEcChhhhc-ccccc-CCCEEEEecCCcchhcccC-CHHHHHHHHHHHHhCCCCCCEE
Confidence 00 0 112579999999886422 12334 7999999999999999999 9999999999999854 457
Q ss_pred EeeCCchHHHHHHHHHHHhcCccEEEecc-c---------------chhhh-----hcccccCcchhhHhhHHHHHHHHH
Q 007911 233 FTVPQLSEAMSVLQDRALELMVPLEVAAP-L---------------DIEKL-----KRLELSLSGDHQLVNAGLAVSLSE 291 (585)
Q Consensus 233 V~~~qd~~~~~vl~~~a~~~~~~l~~~~~-~---------------~~~~~-----~~~~l~L~G~hq~~Na~lAia~a~ 291 (585)
++|.|++.. ...+.+.+++++.++. . ..... ..+.++++|.||++|+++|++++.
T Consensus 217 vln~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~aAia~~~ 292 (450)
T PRK14106 217 VLNYDDPRT----RSLAKKAKARVIFFSRKSLLEEGVFVKNGKIVISLGGKEEEVIDIDEIFIPGEHNLENALAATAAAY 292 (450)
T ss_pred EEeCCcHHH----HHHHhhcCceEEEEecCccCcCceEEECCEEEEecCCCcceEEEHHHcCCCCHHHHHHHHHHHHHHH
Confidence 888888653 3344445555554431 0 00000 013678999999999999999999
Q ss_pred HHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCCCCeEEEEe-cCCCHHHHHHH
Q 007911 292 CWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLD-GAHTAESMEAC 369 (585)
Q Consensus 292 ~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilD-gAHnp~sl~a~ 369 (585)
.+ | ..++++.++|+++. ||||||.+... ++..+|+| |||||+|++++
T Consensus 293 ~l----g-------------i~~~~i~~~L~~~~~~~gR~e~i~~~--------------~~~~vi~D~~ahNP~s~~~~ 341 (450)
T PRK14106 293 LL----G-------------ISPDVIANTLKTFKGVEHRIEFVAEI--------------NGVKFINDSKGTNPDAAIKA 341 (450)
T ss_pred Hc----C-------------CCHHHHHHHHHhCCCCCcceEEEeeE--------------CCEEEEeCCCccCHHHHHHH
Confidence 87 6 24688999999997 99999998653 24679999 69999999998
Q ss_pred HHHH
Q 007911 370 AKWF 373 (585)
Q Consensus 370 l~~~ 373 (585)
++++
T Consensus 342 l~~l 345 (450)
T PRK14106 342 LEAY 345 (450)
T ss_pred HHhC
Confidence 8744
No 27
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=100.00 E-value=3.7e-33 Score=303.47 Aligned_cols=212 Identities=23% Similarity=0.264 Sum_probs=161.7
Q ss_pred CccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCC
Q 007911 75 ELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMP 154 (585)
Q Consensus 75 ~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~p 154 (585)
+.++|+||||||||||++||++||+.+|+++.+-++ + +.|
T Consensus 101 ~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gn----------------i------------------------g~~ 140 (433)
T TIGR01087 101 PLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGN----------------I------------------------GTP 140 (433)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECc----------------c------------------------CHH
Confidence 457999999999999999999999999987543221 1 011
Q ss_pred CHHHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccCC---CCc
Q 007911 155 PLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKP---QIP 231 (585)
Q Consensus 155 s~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~---g~~ 231 (585)
. +.+ ....+.|++|+|+|+. .+|.++.+ +|+++|||||+.||+|+|| |+|+|+.+|++|++. +..
T Consensus 141 -~---~~~-----~~~~~~~~~V~E~~~~-~l~~~~~~-~p~iaViTNI~~DHld~~g-s~e~~~~~K~~i~~~~~~~~~ 208 (433)
T TIGR01087 141 -A---LEV-----LDQEGAELYVLELSSF-QLETTESL-RPEIALILNISEDHLDWHG-SFEDYVAAKLKIFARQTEGDV 208 (433)
T ss_pred -H---HHH-----HhccCCCEEEEEcChh-HhcCCccc-CCCEEEEecCChhHhcccC-CHHHHHHHHHHHHhcCCCCCE
Confidence 0 111 1114789999999865 56677776 7999999999999999999 999999999999985 457
Q ss_pred EEeeCCchHHHHHHHHHHHhcCccEEEecc-c--c--h--h--h--h--hcccccCcchhhHhhHHHHHHHHHHHHHhcC
Q 007911 232 AFTVPQLSEAMSVLQDRALELMVPLEVAAP-L--D--I--E--K--L--KRLELSLSGDHQLVNAGLAVSLSECWLRRTG 298 (585)
Q Consensus 232 aV~~~qd~~~~~vl~~~a~~~~~~l~~~~~-~--~--~--~--~--~--~~~~l~L~G~hq~~Na~lAia~a~~ll~~~g 298 (585)
+|+|.|++... ..+...+++++.++. . + . . . + ..+.++++|.||++|+++|++++..+ |
T Consensus 209 ~i~n~dd~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~a~~l----g 280 (433)
T TIGR01087 209 AVLNADDPRFA----RLAQKSKAQVIWFSVEKDAERGLCIRDGGLYLKPNDLEGSLLGLHNAENILAAIALAKSL----G 280 (433)
T ss_pred EEEECCCHHHH----HhhhhcCceEEEEeCCccCCCceEEECCEEEEeccccccCCCcHHHHHHHHHHHHHHHHc----C
Confidence 89998877533 333334455554431 0 0 0 0 0 1 13578899999999999999999887 6
Q ss_pred CCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCCCCeEEEEec-CCCHHHHHHHHHHH
Q 007911 299 NWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDG-AHTAESMEACAKWF 373 (585)
Q Consensus 299 ~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilDg-AHnp~sl~a~l~~~ 373 (585)
..++.+.++|++|. |+||||++... +++.||+|+ ||||+|+.++++.+
T Consensus 281 -------------i~~~~i~~~L~~f~g~~~R~e~v~~~--------------~g~~~idD~~atn~~a~~~al~~~ 330 (433)
T TIGR01087 281 -------------LNLEAILEALRSFKGLPHRLEYVGQK--------------NGVHFYNDSKATNVHATLAALSAF 330 (433)
T ss_pred -------------CCHHHHHHHHHhCCCCCCceEEEEEE--------------CCEEEEEcCCCCCHHHHHHHHHhC
Confidence 24789999999997 99999999754 368899996 99999999988843
No 28
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=8.7e-34 Score=313.37 Aligned_cols=245 Identities=20% Similarity=0.232 Sum_probs=179.4
Q ss_pred cEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCCCH
Q 007911 77 KVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPL 156 (585)
Q Consensus 77 ~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~ps~ 156 (585)
++|+||||||||||++||++||+..|+++.+.++. |.|+
T Consensus 118 ~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gni------------G~p~----------------------------- 156 (488)
T PRK03369 118 RWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGNI------------GSPV----------------------------- 156 (488)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCCC------------chHH-----------------------------
Confidence 69999999999999999999999999877554432 1111
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccCCCCcEEeeC
Q 007911 157 FQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVP 236 (585)
Q Consensus 157 Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~g~~aV~~~ 236 (585)
+.. ...+.|++|+|+|+.. ++.+..+ +|+++|||||++||+|+|| |+|+|+.+|++||+. .++|+|.
T Consensus 157 ---~~~------~~~~~~~~VlE~ss~q-l~~~~~~-~P~vaVITNI~~DHLd~~g-t~e~ya~aK~~I~~~-~~~Vln~ 223 (488)
T PRK03369 157 ---LDV------LDEPAELLAVELSSFQ-LHWAPSL-RPEAGAVLNIAEDHLDWHG-TMAAYAAAKARALTG-RVAVVGL 223 (488)
T ss_pred ---HHh------ccCCCCEEEEECChHH-hCccccc-CCCEEEEcCCCHHHhhhcC-CHHHHHHHHHHHhcC-CEEEEEC
Confidence 000 1357899999999874 3444444 7999999999999999999 999999999999984 7889999
Q ss_pred CchHHHHHHHHHHHhcCc-----------cEEEecc--cc----hh--hhhcccccCcchhhHhhHHHHHHHHHHHHHhc
Q 007911 237 QLSEAMSVLQDRALELMV-----------PLEVAAP--LD----IE--KLKRLELSLSGDHQLVNAGLAVSLSECWLRRT 297 (585)
Q Consensus 237 qd~~~~~vl~~~a~~~~~-----------~l~~~~~--~~----~~--~~~~~~l~L~G~hq~~Na~lAia~a~~ll~~~ 297 (585)
||+.+..+.. .+..... .+..... +. .. ....+.++++|.||++|+++|++++..+
T Consensus 224 dd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaAla~a~~l---- 298 (488)
T PRK03369 224 DDSRAAALLD-TAPAPVRVGFRLGEPAAGELGVRDGHLVDRAFADDLRLAPVASIPVPGPVGVLDALAAAALARAV---- 298 (488)
T ss_pred CCHHHHHHHH-hCCCcEEEEEeCCCCCcCCceEECCEEEEeccCCccceechhhcCCCcHhHHHHHHHHHHHHHHc----
Confidence 9987654432 2211100 0000000 00 00 0112567899999999999999999887
Q ss_pred CCCcccccCCCCCCCcHHHHHHHHhhCCC-CCcEEEEecccCCCCCCCccccCCCCeEEEEe-cCCCHHHHHHHHHHHHh
Q 007911 298 GNWEKVSHNDGQGADLPDAFVRGLSTAHL-LGRAQIVYDISLVPNSSGLFENSSGELIFYLD-GAHTAESMEACAKWFSS 375 (585)
Q Consensus 298 g~~~~~~~~~~~~~~~~e~i~~gL~~~~~-pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilD-gAHnp~sl~a~l~~~~~ 375 (585)
| ..++.+.++|++|.+ |||||++... ++..||.| |||||+|++++++.|
T Consensus 299 G-------------i~~e~i~~~L~~f~~~~gR~E~v~~~--------------~gv~iIDDS~AhNp~s~~aal~~~-- 349 (488)
T PRK03369 299 G-------------VPAGAIADALASFRVGRHRAEVVAVA--------------DGITYVDDSKATNPHAARASILAY-- 349 (488)
T ss_pred C-------------CCHHHHHHHHHhCCCCCCccEEEEcC--------------CCEEEEECCCCCCHHHHHHHHHhC--
Confidence 6 246889999999995 9999999764 35666666 799999999998622
Q ss_pred hhccCCCCCCccccccccccchhHHHhhccccccccccccccccCccEEEEE-ecCCCCChhhhhHHHHHHhhhcCCCcc
Q 007911 376 VVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLF-NCMEARHPQVLLPRLVSTCASSGTHFS 454 (585)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvF-g~~~~Rd~~~ll~~l~~~~~~~~~~fd 454 (585)
.+.++|| |...++|...|++.+.+ ..+
T Consensus 350 ---------------------------------------------~~iilI~GG~~k~~d~~~l~~~l~~-------~~~ 377 (488)
T PRK03369 350 ---------------------------------------------PRVVWIAGGLLKGASVDALVAEMAS-------RLV 377 (488)
T ss_pred ---------------------------------------------CCeEEEecCcCCCCCHHHHHHHHhh-------hee
Confidence 1478999 77778888888877754 246
Q ss_pred EEEEeCC
Q 007911 455 KALFVPS 461 (585)
Q Consensus 455 ~~if~~~ 461 (585)
++++.++
T Consensus 378 ~vi~iG~ 384 (488)
T PRK03369 378 GAVLIGR 384 (488)
T ss_pred EEEEEcC
Confidence 6666543
No 29
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=2.5e-33 Score=326.74 Aligned_cols=257 Identities=15% Similarity=0.144 Sum_probs=177.5
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCCC
Q 007911 76 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPP 155 (585)
Q Consensus 76 l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~ps 155 (585)
.++|+||||||||||++||.+||+.+|++...+. .+ .+|.++.
T Consensus 104 ~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~~-gG---------~~g~~~~--------------------------- 146 (809)
T PRK14573 104 QISILVSGSHGKTTVSSLITAIFQEAKKDPSYAI-GG---------LNQEGLN--------------------------- 146 (809)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEE-CC---------ccccccc---------------------------
Confidence 3799999999999999999999999998642221 11 0111110
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccC---CCCcE
Q 007911 156 LFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFK---PQIPA 232 (585)
Q Consensus 156 ~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k---~g~~a 232 (585)
+ ...+.|++|+|+|+.. ..+..+ +|+++|||||+.||+|+|+.|+|+|+.+|..+++ ++..+
T Consensus 147 --~----------~~~~~d~~V~E~ss~~--~~~~~~-~P~iaViTNI~~DHLd~~~gs~e~y~~ak~~~~~~~~~~~~~ 211 (809)
T PRK14573 147 --G----------YSGSSEYFVAEADESD--GSLKHY-TPEFSVITNIDNEHLSNFEGDRELLLASIQDFARKVQQINKC 211 (809)
T ss_pred --c----------ccCCCCEEEEECCCCc--chhhee-ecCEEEEeCCChhhhhhhcCCHHHHHHHHHHHHhcCCCCCEE
Confidence 0 0124799999998762 222233 8999999999999999884499999999988875 35668
Q ss_pred EeeCCchHHHHHHHHHHHhc----CccEEE--e--cc----cch---h-hhhcccccCcchhhHhhHHHHHHHHHHHHHh
Q 007911 233 FTVPQLSEAMSVLQDRALEL----MVPLEV--A--AP----LDI---E-KLKRLELSLSGDHQLVNAGLAVSLSECWLRR 296 (585)
Q Consensus 233 V~~~qd~~~~~vl~~~a~~~----~~~l~~--~--~~----~~~---~-~~~~~~l~L~G~hq~~Na~lAia~a~~ll~~ 296 (585)
|+|.||+....... .... .+.+.. + .. +.. . ....+.++++|.||++|+++|++++..+
T Consensus 212 V~N~Dd~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~l--- 286 (809)
T PRK14573 212 FYNGDCPRLKGCLQ--GHSYGFSSSCDLHILSYYQEGWRSYFSAKFLGVVYQDIELNLVGMHNVANAAAAMGIALTL--- 286 (809)
T ss_pred EEeCCCHHHHhhcc--cEEEccCCCCcEEEEEEEecCCeEEEEEEECCceEEEEEeccccHhhHHHHHHHHHHHHHc---
Confidence 99999985433111 0000 111111 0 10 110 0 0123667899999999999999999887
Q ss_pred cCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 007911 297 TGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSS 375 (585)
Q Consensus 297 ~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilDgAHnp~sl~a~l~~~~~ 375 (585)
| ..++.+.++|++|. |+||||++... +++.||+||||||+|+++++++++.
T Consensus 287 -g-------------i~~~~i~~~L~~f~~~~~R~e~~~~~--------------~~~~~i~D~ahnP~~~~a~l~~l~~ 338 (809)
T PRK14573 287 -G-------------IDEGAIRNALKGFSGVQRRLERKNSS--------------ETFLFLEDYAHHPSEISCTLRAVRD 338 (809)
T ss_pred -C-------------CCHHHHHHHHHhCCCCCCCCEEEecc--------------CCcEEEEECCCCHHHHHHHHHHHHh
Confidence 6 24688999999998 99999999764 3578999999999999999998876
Q ss_pred hhccCCCCCCccccccccccchhHHHhhccccccccccccccccCccEEEEEecCCCCChhhhhHHHHHHhhhcCCCccE
Q 007911 376 VVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSK 455 (585)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~~~Rd~~~ll~~l~~~~~~~~~~fd~ 455 (585)
.. +..|+++||+...++.....+..+...+. .+|.
T Consensus 339 ~~-----------------------------------------~~~rli~vf~~~~~~~~~~~~~~~~~~l~----~~d~ 373 (809)
T PRK14573 339 AV-----------------------------------------GLRRIIAICQPHRFSRLRECLDSFPSAFQ----DADE 373 (809)
T ss_pred hc-----------------------------------------CCCEEEEEEcCCcchhHHHHHHHHHHHHH----HCCE
Confidence 41 23468999964444444444444444442 3788
Q ss_pred EEEeCCC
Q 007911 456 ALFVPSV 462 (585)
Q Consensus 456 ~if~~~~ 462 (585)
+++++..
T Consensus 374 vilt~~~ 380 (809)
T PRK14573 374 VILTDVY 380 (809)
T ss_pred EEECCcc
Confidence 8887643
No 30
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=100.00 E-value=2.8e-33 Score=326.89 Aligned_cols=284 Identities=17% Similarity=0.214 Sum_probs=203.6
Q ss_pred ChHHHHHHHHHhCCC-CcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHH
Q 007911 56 KLQRMSMYLKILGLE-DRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLF 134 (585)
Q Consensus 56 ~l~~~~~~L~~Lg~~-~p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~ 134 (585)
.++++++.|..|+.. .+..++++|+||||||||||+.||++||+..|..++ ++. ++ |+
T Consensus 86 ~V~d~~~al~~la~~~~~~~~~~vIgVTGT~GKTTT~~ll~~iL~~~~~~~~---~~~--~~------n~---------- 144 (822)
T PRK11930 86 KVKDPLKALQELAAYHRSQFDIPVIGITGSNGKTIVKEWLYQLLSPDYNIVR---SPR--SY------NS---------- 144 (822)
T ss_pred EECCHHHHHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHHhccCcEec---CCc--cc------Cc----------
Confidence 467788888888722 356678999999999999999999999998775432 222 11 10
Q ss_pred HHHHHHHhhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeecCC--CCcccc-ccccCCcEEEEcCCCccccccc
Q 007911 135 YFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLG--GEKDST-NVIKEPVVCGVTSLGMDHMELL 211 (585)
Q Consensus 135 ~f~~v~~~l~~~~~~~~~~ps~Fe~lTllA~~~F~~~~vd~aVlEvG~g--Gr~D~T-nvi~~P~vavITNIg~DHld~l 211 (585)
..+.|. ++ . ....++|++|+|+|+. |..+.. .++ +|+++|||||+.||+|+|
T Consensus 145 ---------------~ig~p~-----~~---~-~~~~~~~~~V~E~s~s~~~~~~~l~~~~-~PdiaViTNI~~dHLd~~ 199 (822)
T PRK11930 145 ---------------QIGVPL-----SV---W-QLNEEHELGIFEAGISQPGEMEALQKII-KPTIGILTNIGGAHQENF 199 (822)
T ss_pred ---------------chhHHH-----HH---h-cCCCCCcEEEEEeCCCCCChHHHHhhhh-CCCEEEEcCccHHHHhhc
Confidence 011121 11 1 1357899999999976 455433 334 799999999999999999
Q ss_pred CCCHHHHHHHHhcccCCCCcEEeeCCchHHHHHHHHHHHhc----------CccEEEec----c----cchh---hhhcc
Q 007911 212 GNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALEL----------MVPLEVAA----P----LDIE---KLKRL 270 (585)
Q Consensus 212 G~Tle~IA~~KagI~k~g~~aV~~~qd~~~~~vl~~~a~~~----------~~~l~~~~----~----~~~~---~~~~~ 270 (585)
| |+|+|+.+|+.||+....+|+|.|++....++.+..... .+.++... . +... ....+
T Consensus 200 g-t~e~y~~aK~~i~~~~~~~vin~Dd~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~i~~~~~~~~~~~~~~~~~~~~ 278 (822)
T PRK11930 200 R-SIKQKIMEKLKLFKDCDVIIYNGDNELISSCITKSNLTLKLISWSRKDPEAPLYIPFVEKKEDHTVISYTYKGEDFHF 278 (822)
T ss_pred C-CHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHhhhcCCcEEEEcCCCCCCcEEEEEEEEcCCceEEEEEeCCceEEE
Confidence 9 999999999999998778899999987665543321110 01111100 0 1000 01246
Q ss_pred cccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccC
Q 007911 271 ELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENS 349 (585)
Q Consensus 271 ~l~L~G~hq~~Na~lAia~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~ 349 (585)
.++++|.||++|+++|++++..+ | ..++++.++|++|+ ++||||++...
T Consensus 279 ~l~l~G~hnv~NalaAia~a~~l----G-------------i~~~~i~~~L~~f~~~~gR~e~~~~~------------- 328 (822)
T PRK11930 279 EIPFIDDASIENLIHCIAVLLYL----G-------------YSADQIQERMARLEPVAMRLEVKEGI------------- 328 (822)
T ss_pred EecCCCHHHHHHHHHHHHHHHHc----C-------------CCHHHHHHHHHhCCCCCCeeEEEEcC-------------
Confidence 78999999999999999999887 7 24789999999998 99999998754
Q ss_pred CCCeEEEEe-cCCCHHHHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhccccccccccccccccCccEEEEEe
Q 007911 350 SGELIFYLD-GAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFN 428 (585)
Q Consensus 350 ~~~~~vilD-gAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg 428 (585)
++..+|+| |||||+|++++++.|+... +.+++|+|+|
T Consensus 329 -~g~~vIdDSyn~nP~s~~aaL~~l~~~~-----------------------------------------~~~~~ilIlG 366 (822)
T PRK11930 329 -NNCTLINDSYNSDLQSLDIALDFLNRRS-----------------------------------------QSKKKTLILS 366 (822)
T ss_pred -CCcEEEECCCCCCHHHHHHHHHHHHhcc-----------------------------------------cCCCEEEEEC
Confidence 35789999 8999999999999887641 1236899998
Q ss_pred cCCC--CChhhhhHHHHHHhhhcCCCccEEEEeC
Q 007911 429 CMEA--RHPQVLLPRLVSTCASSGTHFSKALFVP 460 (585)
Q Consensus 429 ~~~~--Rd~~~ll~~l~~~~~~~~~~fd~~if~~ 460 (585)
.+.+ .+...+...+.+.+.. ..+++++++.
T Consensus 367 ~m~elG~~~~~~~~~l~~~l~~--~~i~~vi~~G 398 (822)
T PRK11930 367 DILQSGQSPEELYRKVAQLISK--RGIDRLIGIG 398 (822)
T ss_pred ChHhcCchHHHHHHHHHHHHHH--cCCCEEEEEC
Confidence 7754 3455667777776643 2478888864
No 31
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.1e-32 Score=298.36 Aligned_cols=212 Identities=21% Similarity=0.195 Sum_probs=157.2
Q ss_pred CccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCC
Q 007911 75 ELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMP 154 (585)
Q Consensus 75 ~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~p 154 (585)
+.++|+||||||||||++||++||+..|.++.+.++. |.|.+.
T Consensus 107 ~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gni------------g~p~~~------------------------- 149 (447)
T PRK02472 107 EAPIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGNI------------GYPASE------------------------- 149 (447)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEccc------------ChhhHH-------------------------
Confidence 3479999999999999999999999999876443321 111110
Q ss_pred CHHHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccCCCC---c
Q 007911 155 PLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQI---P 231 (585)
Q Consensus 155 s~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~g~---~ 231 (585)
+ . -...+.|++|+|+++.+.. .++.+ +|+++|||||+.||+++|| |+|+|+.+|++|+++.. .
T Consensus 150 ----~------~-~~~~~~~~~V~E~ss~~~~-~~~~~-~P~iaVITnI~~DHld~~g-t~e~i~~~K~~i~~~~~~~~~ 215 (447)
T PRK02472 150 ----V------A-QKATADDTLVMELSSFQLM-GIETF-RPHIAVITNIYPAHLDYHG-TFENYVAAKWNIQKNQTEDDY 215 (447)
T ss_pred ----H------H-hcCCCCCEEEEEcCchhhC-ccccc-CCCEEEEeccChhhhcccC-CHHHHHHHHHHHHhcCCCCCE
Confidence 0 0 0123569999999877543 35566 7999999999999999999 99999999999998654 4
Q ss_pred EEeeCCchHHHHHHHHHHHhcCccEEEecc---c-----------chhh---hhcccccCcchhhHhhHHHHHHHHHHHH
Q 007911 232 AFTVPQLSEAMSVLQDRALELMVPLEVAAP---L-----------DIEK---LKRLELSLSGDHQLVNAGLAVSLSECWL 294 (585)
Q Consensus 232 aV~~~qd~~~~~vl~~~a~~~~~~l~~~~~---~-----------~~~~---~~~~~l~L~G~hq~~Na~lAia~a~~ll 294 (585)
+|+|.|++...... .+.+++++.++. . .... +..+.++++|.||++|+++|++++..+
T Consensus 216 ~v~n~dd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~l- 290 (447)
T PRK02472 216 LVINFDQEEVKELA----KQTKATVVPFSTTEKVEDGAYIKDGALYFKGEKIMAADDIVLPGSHNLENALAAIAAAKLL- 290 (447)
T ss_pred EEEeCCcHHHHHHH----hhcCceEEEeecCCCCcCceEEECCEEEECCceEEehhhcCCCCHHHHHHHHHHHHHHHHc-
Confidence 89999988654332 222333333220 0 0000 012367899999999999999999987
Q ss_pred HhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCCCCeEEEEec-CCCHHHHHHHHHH
Q 007911 295 RRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDG-AHTAESMEACAKW 372 (585)
Q Consensus 295 ~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilDg-AHnp~sl~a~l~~ 372 (585)
| ..++.+.++|++|. |+||||++... +++.||+|+ ||||+|+.++++.
T Consensus 291 ---g-------------i~~~~i~~~L~~f~~~~~R~e~~~~~--------------~g~~vi~D~~a~N~~s~~~al~~ 340 (447)
T PRK02472 291 ---G-------------VSNEAIREVLSTFSGVKHRLQYVGTI--------------DGRKFYNDSKATNILATQKALSG 340 (447)
T ss_pred ---C-------------CCHHHHHHHHHhCCCCCCcceEEEEE--------------CCeEEEECCCCCCHHHHHHHHHh
Confidence 6 24688999999998 99999998653 357899996 9999999887763
No 32
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=100.00 E-value=4.1e-32 Score=296.95 Aligned_cols=214 Identities=20% Similarity=0.220 Sum_probs=155.3
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCCC
Q 007911 76 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPP 155 (585)
Q Consensus 76 l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~ps 155 (585)
-++|+||||||||||++||++||+.+|++... .++|. +.. |.
T Consensus 99 ~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~-------------~~gg~-~~~------------------------~~ 140 (448)
T TIGR01082 99 RHSIAVAGTHGKTTTTAMIAVILKEAGLDPTV-------------VVGGL-VKE------------------------AG 140 (448)
T ss_pred CcEEEEECCCChHHHHHHHHHHHHHcCCCCeE-------------EECcc-ccc------------------------CC
Confidence 37999999999999999999999999974321 12221 100 00
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCccccc-ccCCCHHHHHHHHhcccCC---CCc
Q 007911 156 LFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHME-LLGNTLNDIAFHKAGIFKP---QIP 231 (585)
Q Consensus 156 ~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld-~lG~Tle~IA~~KagI~k~---g~~ 231 (585)
. .. .....|++|+|+++..... ..+ +|+++|||||++||+| +++ |+|+|+.+|..|++. +..
T Consensus 141 ~-~~---------~~~~~~~~V~E~s~~q~~~--~~~-~p~vaVitNI~~DHld~~~~-s~e~y~~aK~~i~~~~~~~~~ 206 (448)
T TIGR01082 141 T-NA---------RLGSGEYLVAEADESDASF--LHL-QPNVAIVTNIEPDHLDTYGS-SFERLKAAFEKFIHNLPFYGL 206 (448)
T ss_pred c-cc---------ccCCCCEEEEECCCccchH--hhc-cCCEEEEecCChhhcchhcC-CHHHHHHHHHHHHHhCCCCCE
Confidence 0 00 0123699999998652211 222 7999999999999999 665 999999999999974 678
Q ss_pred EEeeCCchHHHHHHHHHHHhcCccEEEec----------------c----cchh----hhhcccccCcchhhHhhHHHHH
Q 007911 232 AFTVPQLSEAMSVLQDRALELMVPLEVAA----------------P----LDIE----KLKRLELSLSGDHQLVNAGLAV 287 (585)
Q Consensus 232 aV~~~qd~~~~~vl~~~a~~~~~~l~~~~----------------~----~~~~----~~~~~~l~L~G~hq~~Na~lAi 287 (585)
+|+|.||+....+.. .+. .....+. . |... ....+.++++|.||++|+++|+
T Consensus 207 ~V~n~dd~~~~~~~~-~~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~l~G~hn~~N~~aA~ 282 (448)
T TIGR01082 207 AVICADDPVLRELVP-KAT---EQVITYGGSGEDADYRAENIQQSGAEGKFSVRGKGKLYLEFTLNLPGRHNVLNALAAI 282 (448)
T ss_pred EEEECCCHHHHHHHh-hcC---CCEEEeCCCCCCCcEEEEEEEecCCeEEEEEEECCceEEEEEecCccHhHHHHHHHHH
Confidence 999999987655432 211 1111110 0 0000 0013567899999999999999
Q ss_pred HHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCCCCeEEEEecCCCHHHH
Q 007911 288 SLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESM 366 (585)
Q Consensus 288 a~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilDgAHnp~sl 366 (585)
+++..+ | ..++.+.++|++|. ++||||++... ++..||+||||||+++
T Consensus 283 a~~~~l----g-------------i~~~~i~~~l~~f~~~~~R~e~~~~~--------------~gv~~i~D~ahn~~~~ 331 (448)
T TIGR01082 283 AVALEL----G-------------IDFEAILRALANFQGVKRRFEILGEF--------------GGVLLIDDYAHHPTEI 331 (448)
T ss_pred HHHHHc----C-------------CCHHHHHHHHHhCCCCCccceEEEEe--------------CCeEEEEcCCCCHHHH
Confidence 999887 6 24688999999998 68999999654 3689999999999999
Q ss_pred HHHHHHHHhh
Q 007911 367 EACAKWFSSV 376 (585)
Q Consensus 367 ~a~l~~~~~~ 376 (585)
++++++++..
T Consensus 332 ~a~~~al~~~ 341 (448)
T TIGR01082 332 KATLKAARQG 341 (448)
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 33
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.5e-32 Score=302.16 Aligned_cols=239 Identities=17% Similarity=0.102 Sum_probs=172.5
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCCC
Q 007911 76 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPP 155 (585)
Q Consensus 76 l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~ps 155 (585)
.++|+||||||||||++||++||+.+|.++.+.++. |.|+.
T Consensus 115 ~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~Gni------------G~p~~--------------------------- 155 (468)
T PRK04690 115 PGTVCVTGTKGKSTTTALLAHLLRAAGHRTALVGNI------------GVPLL--------------------------- 155 (468)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEcCCC------------CcchH---------------------------
Confidence 379999999999999999999999999877554431 22221
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccCCC--CcEE
Q 007911 156 LFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQ--IPAF 233 (585)
Q Consensus 156 ~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~g--~~aV 233 (585)
+.+ -...+.|++|+|+|+...-+......+|+++|||||+.||+|+|| ++++|+.+|++||+.. ..+|
T Consensus 156 --~~~-------~~~~~~~~~VlE~ss~q~~~~~~~~~~P~iaVItNI~~DHld~~g-s~e~y~~aK~~i~~~~~~~~~v 225 (468)
T PRK04690 156 --EVL-------APQPAPEYWAIELSSYQTGDVARSGARPELAVVLNLFPEHLDWHG-GEARYYRDKLSLVTEGRPRIAL 225 (468)
T ss_pred --HHh-------ccCCCCcEEEEEecCCcccccccccCCCCEEEEcCCCHHHhcccC-CHHHHHHHHHHHHhCCCCCeEE
Confidence 100 012356999999999743332211127999999999999999999 9999999999999854 4578
Q ss_pred eeCCchHHHHHHHHHHHhcCccEEEecc---------cchh----hhhcccccCcchhhHhhHHHHHHHHHHHHHhcCCC
Q 007911 234 TVPQLSEAMSVLQDRALELMVPLEVAAP---------LDIE----KLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNW 300 (585)
Q Consensus 234 ~~~qd~~~~~vl~~~a~~~~~~l~~~~~---------~~~~----~~~~~~l~L~G~hq~~Na~lAia~a~~ll~~~g~~ 300 (585)
+|.|++..... .....+++.++. +... .+....+++.|.||+.|+++|++++..+ |
T Consensus 226 ~n~dd~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~~A~a~~~~l----g-- 294 (468)
T PRK04690 226 LNAADPRLAAL-----QLPDSEVVWFNHPDGWHVRGDVVYRGEQALFDTALVPLPGRHNRGNLCAVLAALEAL----G-- 294 (468)
T ss_pred EeCccHHHHHH-----hcCCCeEEEeeCCccceecceEEEcCCceEEeeccccCccHhhHHHHHHHHHHHHHc----C--
Confidence 89998764332 112233333321 0000 0123467899999999999999999887 6
Q ss_pred cccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCCCCeEEEEe-cCCCHHHHHHHHHHHHhhhc
Q 007911 301 EKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLD-GAHTAESMEACAKWFSSVVK 378 (585)
Q Consensus 301 ~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilD-gAHnp~sl~a~l~~~~~~~~ 378 (585)
..++.+.++|+++. ||||||++... ++..||.| +||||+|++++++.|
T Consensus 295 -----------i~~~~i~~~l~~~~~~~gR~e~~~~~--------------~g~~iidDs~ahNp~a~~~al~~~----- 344 (468)
T PRK04690 295 -----------LDAVALAPAAAGFRPLPNRLQELGSR--------------DGITYVNDSISTTPHASLAALDCF----- 344 (468)
T ss_pred -----------CCHHHHHHHHHhCCCCCCCcEEEEcc--------------CCeEEEEeCCCCCHHHHHHHHHhc-----
Confidence 24688999999996 99999999764 24677777 599999999887633
Q ss_pred cCCCCCCccccccccccchhHHHhhccccccccccccccccCccEEEEEecC-CCCChhhhhHHHHH
Q 007911 379 GSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCM-EARHPQVLLPRLVS 444 (585)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~-~~Rd~~~ll~~l~~ 444 (585)
+..+.++|||.+ .++|...+++.|.+
T Consensus 345 ----------------------------------------~~~~i~~i~Gg~~k~kd~~~l~~~l~~ 371 (468)
T PRK04690 345 ----------------------------------------AGRRVALLVGGHDRGLDWTDFAAHMAQ 371 (468)
T ss_pred ----------------------------------------cCCcEEEEEcCCCCCCCHHHHHHHHHh
Confidence 123688999964 66788888877743
No 34
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2e-32 Score=300.00 Aligned_cols=214 Identities=20% Similarity=0.238 Sum_probs=158.3
Q ss_pred CccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCC
Q 007911 75 ELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMP 154 (585)
Q Consensus 75 ~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~p 154 (585)
+.++|+||||||||||++||++||+.+|+++.+-+.. |. |
T Consensus 103 ~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~Gni------------G~----------------------------p 142 (454)
T PRK01368 103 NLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNI------------GV----------------------------P 142 (454)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccC------------CH----------------------------H
Confidence 4579999999999999999999999999886443321 11 1
Q ss_pred CHHHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccC---CCCc
Q 007911 155 PLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFK---PQIP 231 (585)
Q Consensus 155 s~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k---~g~~ 231 (585)
. + . ...+.|++|+|+|+... +.+..+ +|+++|||||+.||+|+|| |+|+|+.+|..||+ ++..
T Consensus 143 ~----l-----~--~~~~~~~~VlE~ss~ql-~~~~~~-~P~iavitNI~~DHLd~~~-s~e~y~~aK~~i~~~~~~~~~ 208 (454)
T PRK01368 143 A----L-----Q--AKASKDGYVLELSSFQL-DLVKTF-TAKIAVLLNITPDHLDRHQ-DMDGYIAAKSKIFDRMDKDSY 208 (454)
T ss_pred H----h-----c--ccCCCCEEEEEcCchhh-cccccc-CCCEEEEecCChhHhhccC-CHHHHHHHHHHHHhcCCCCCE
Confidence 0 0 0 12346899999998753 344434 7999999999999999999 99999999999996 3567
Q ss_pred EEeeCCchHHHHHHHHHHHhcCccEEEecc-------c---------ch--h--hhhcccccCcchhhHhhHHHHHHHHH
Q 007911 232 AFTVPQLSEAMSVLQDRALELMVPLEVAAP-------L---------DI--E--KLKRLELSLSGDHQLVNAGLAVSLSE 291 (585)
Q Consensus 232 aV~~~qd~~~~~vl~~~a~~~~~~l~~~~~-------~---------~~--~--~~~~~~l~L~G~hq~~Na~lAia~a~ 291 (585)
+|+|.||+....+..+.....+++++.++. + .. . ....+.++++|.||++|+++|++++.
T Consensus 209 ~Vln~Dd~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aAia~~~ 288 (454)
T PRK01368 209 AVINIDNDYCREIFIKLQQEQRIKLIPFSVTKILENGISVVDDKISDNFFDDISFKLPFNKNLQGKHNCENIAASYAVAK 288 (454)
T ss_pred EEEeCCcHHHHHHHHHhhcccCceEEEEeCCcccCCCcEEECCEEEEEecCCcceEEEecCCCCchhhHHHHHHHHHHHH
Confidence 899999987655433211111222222210 0 00 0 01134567899999999999999998
Q ss_pred HHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCCCCeEEEEe-cCCCHHHHHHH
Q 007911 292 CWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLD-GAHTAESMEAC 369 (585)
Q Consensus 292 ~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilD-gAHnp~sl~a~ 369 (585)
.+ | ..++.+.++|++|. ||||||++... ++..||+| +||||+|++++
T Consensus 289 ~l----g-------------i~~~~i~~~L~~F~~~~~Rle~v~~~--------------~gv~~i~DS~atN~~a~~~a 337 (454)
T PRK01368 289 II----G-------------VEPKKILESISSFQSLPHRMQYIGSI--------------NNISFYNDSKATNAISAVQS 337 (454)
T ss_pred Hc----C-------------CCHHHHHHHHHhCCCCCcceEEEEEE--------------CCeEEEECCCCCCHHHHHHH
Confidence 87 6 24688999999987 99999999764 35789999 89999999998
Q ss_pred HHHH
Q 007911 370 AKWF 373 (585)
Q Consensus 370 l~~~ 373 (585)
++.|
T Consensus 338 l~~~ 341 (454)
T PRK01368 338 IKAL 341 (454)
T ss_pred HHhc
Confidence 8744
No 35
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1e-31 Score=295.81 Aligned_cols=243 Identities=21% Similarity=0.278 Sum_probs=178.1
Q ss_pred cEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCCCH
Q 007911 77 KVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPL 156 (585)
Q Consensus 77 ~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~ps~ 156 (585)
++|+||||||||||++||++||+..|+++++.++. |.|++.
T Consensus 122 ~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gni------------g~p~~~--------------------------- 162 (473)
T PRK00141 122 TWLAVTGTNGKTTTTAMLAAMMQEGGFAAQAVGNI------------GVPVSA--------------------------- 162 (473)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHHhcCCcEEEeccC------------ChhHHH---------------------------
Confidence 69999999999999999999999999988654432 111110
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccCCCCcEEeeC
Q 007911 157 FQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVP 236 (585)
Q Consensus 157 Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~g~~aV~~~ 236 (585)
. + -...++|++|+|+|+.+. +.+..+ +|+++|||||+.||+|+|| |+|+|+.+|+.||+. ..+|+|.
T Consensus 163 --~-----l--~~~~~~~~~V~E~ss~~l-~~~~~~-~pdiaViTNi~~dHLd~~~-s~e~y~~aK~~l~~~-~~~vln~ 229 (473)
T PRK00141 163 --A-----L--VAQPRIDVLVAELSSFQL-HWSPTL-TPDVGVVLNLAEDHIDWHG-SMRDYAADKAKVLRG-PVAVIGA 229 (473)
T ss_pred --H-----H--hcCCCCCEEEEecCCccc-ccCccc-CCCEEEEcCCChhhccccC-CHHHHHHHHHHHhhC-CEEEEEC
Confidence 0 0 013568999999999875 434455 7999999999999999999 999999999999975 4689999
Q ss_pred CchHHHHHHHHHHHhcCccEEEec---c------cc---h--h--h----h-hcccccCcchhhHhhHHHHHHHHHHHHH
Q 007911 237 QLSEAMSVLQDRALELMVPLEVAA---P------LD---I--E--K----L-KRLELSLSGDHQLVNAGLAVSLSECWLR 295 (585)
Q Consensus 237 qd~~~~~vl~~~a~~~~~~l~~~~---~------~~---~--~--~----~-~~~~l~L~G~hq~~Na~lAia~a~~ll~ 295 (585)
||+....+..+ .. ..+++.++ . +. . . . + ..+.++++|.||++|+++|++++..+
T Consensus 230 Dd~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aA~a~~~~l-- 304 (473)
T PRK00141 230 DDEYVVQLTSA-AD--LSGLIGFTMGEPAAGQVGVRDGELVDNAFGQNVVLASAEGISPAGPAGVLDALAAAAVARSQ-- 304 (473)
T ss_pred CCHHHHHHHhh-cC--CCcEEEEeCCCCCcCcceEECCEEEEecCCCceEEeehhhcCCCcHhHHHHHHHHHHHHHHc--
Confidence 99876544321 10 11222221 0 00 0 0 0 0 12357899999999999999999887
Q ss_pred hcCCCcccccCCCCCCCcHHHHHHHHhhCCCCC-cEEEEecccCCCCCCCccccCCCCeEEEEec--CCCHHHHHHHHHH
Q 007911 296 RTGNWEKVSHNDGQGADLPDAFVRGLSTAHLLG-RAQIVYDISLVPNSSGLFENSSGELIFYLDG--AHTAESMEACAKW 372 (585)
Q Consensus 296 ~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~~pG-R~E~i~~~~~~~~~~~~~~~~~~~~~vilDg--AHnp~sl~a~l~~ 372 (585)
| ..++.+.++|+++.|+| |||++... ++. +++|+ ||||+|++++++.
T Consensus 305 --g-------------i~~~~i~~~l~~~~~~~~R~e~~~~~--------------~~~-~iiDdsyahNp~s~~~~l~~ 354 (473)
T PRK00141 305 --G-------------VAPEAIARALSSFEVAGHRGQVVAEH--------------GGV-TWIDNSKATNPHAADAALAG 354 (473)
T ss_pred --C-------------CCHHHHHHHHhhCCCCCCceEEEEEe--------------CCE-EEEEcCCCCCHHHHHHHHHh
Confidence 6 24688999999999776 99998753 234 56665 9999999999884
Q ss_pred HHhhhccCCCCCCccccccccccchhHHHhhccccccccccccccccCccEEEEE-ecCCCCChhhhhHHHHHHhhhcCC
Q 007911 373 FSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLF-NCMEARHPQVLLPRLVSTCASSGT 451 (585)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvF-g~~~~Rd~~~ll~~l~~~~~~~~~ 451 (585)
++ +.++|| |+..++|...+++.+.+.
T Consensus 355 l~-----------------------------------------------~~~~i~gG~~kdkd~~~~~~~l~~~------ 381 (473)
T PRK00141 355 HE-----------------------------------------------SVVWVAGGQLKGADIDDLIRTHAPR------ 381 (473)
T ss_pred cC-----------------------------------------------CEEEEecCccCCCChHHHHHHHHhh------
Confidence 31 358889 777899999998887552
Q ss_pred CccEEEEeC
Q 007911 452 HFSKALFVP 460 (585)
Q Consensus 452 ~fd~~if~~ 460 (585)
.+++++++
T Consensus 382 -~~~~~~~~ 389 (473)
T PRK00141 382 -IKAAVVLG 389 (473)
T ss_pred -ccEEEEEC
Confidence 45666654
No 36
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.6e-31 Score=286.25 Aligned_cols=282 Identities=22% Similarity=0.279 Sum_probs=210.4
Q ss_pred ChHHHHHHHHHhCCC-CcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHH
Q 007911 56 KLQRMSMYLKILGLE-DRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLF 134 (585)
Q Consensus 56 ~l~~~~~~L~~Lg~~-~p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~ 134 (585)
.+.++.+.|.+|... ....+.++|+|||++|||||..|+++||+..| +| |.||+ ++
T Consensus 82 ~V~d~~~al~~la~~~~~~~~~kvIaITGS~GKTTTKe~la~iL~~~~-~v--~~t~g--n~------------------ 138 (451)
T COG0770 82 LVLDTLEALGKLAKAYRQKFNAKVIAITGSNGKTTTKEMLAAILSTKG-KV--HATPG--NF------------------ 138 (451)
T ss_pred EeHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCcHHHHHHHHHHHhhcC-eE--ecCCC--cc------------------
Confidence 457788888888733 23346799999999999999999999999955 33 77887 22
Q ss_pred HHHHHHHhhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeecCC--CCccccccccCCcEEEEcCCCcccccccC
Q 007911 135 YFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLG--GEKDSTNVIKEPVVCGVTSLGMDHMELLG 212 (585)
Q Consensus 135 ~f~~v~~~l~~~~~~~~~~ps~Fe~lTllA~~~F~~~~vd~aVlEvG~g--Gr~D~Tnvi~~P~vavITNIg~DHld~lG 212 (585)
+++++.| +|++. .....|++|+|+|+. |+++-+--+-+|++++||||+.+|++++|
T Consensus 139 -------------Nn~iGlP-----ltll~----~~~~~e~~VlEmG~~~~GeI~~l~~i~~P~iavItnIg~aHle~fg 196 (451)
T COG0770 139 -------------NNEIGLP-----LTLLR----LPADTEYAVLEMGMNHPGEIAELSEIARPDIAVITNIGEAHLEGFG 196 (451)
T ss_pred -------------Cccccch-----hHHHh----CCCcccEEEEEcCCCCCCcHHHHhcccCCCEEEEcChhHHHHHhcC
Confidence 1223444 33321 245699999999998 67776554558999999999999999999
Q ss_pred CCHHHHHHHHhcccC---CCCcEEeeCCchHHHHHHHHHHHhc-CccEEEecc-----cch--------------h---h
Q 007911 213 NTLNDIAFHKAGIFK---PQIPAFTVPQLSEAMSVLQDRALEL-MVPLEVAAP-----LDI--------------E---K 266 (585)
Q Consensus 213 ~Tle~IA~~KagI~k---~g~~aV~~~qd~~~~~vl~~~a~~~-~~~l~~~~~-----~~~--------------~---~ 266 (585)
|.|.||++|+.|+. +++.+|+|.|++. +...+.+. ..+++.++. +.. . .
T Consensus 197 -s~e~Ia~aK~Ei~~~~~~~g~ai~n~d~~~----~~~~~~~~~~~~v~~fg~~~~~d~~~~~i~~~~~~~~f~~~~~~~ 271 (451)
T COG0770 197 -SREGIAEAKAEILAGLRPEGIAILNADNPL----LKNWAAKIGNAKVLSFGLNNGGDFRATNIHLDEEGSSFTLDIEGG 271 (451)
T ss_pred -CHHHHHHHHHHHHhccCCCcEEEEECccHH----HHHHHhhcCCCcEEEEcCCCCCceeeEEEEEcCCceEEEEEecCc
Confidence 79999999999997 5666899998875 22233322 233444431 110 0 0
Q ss_pred hhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCc
Q 007911 267 LKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGL 345 (585)
Q Consensus 267 ~~~~~l~L~G~hq~~Na~lAia~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~ 345 (585)
...+.++++|+||+.|+++|++++..+ | ...++|+++|+.+. .+||+|.+...
T Consensus 272 ~~~~~l~~~G~hn~~NalaA~a~a~~l----G-------------~~~e~i~~~L~~~~~~~gR~~~~~~~--------- 325 (451)
T COG0770 272 EAEFELPLPGRHNVTNALAAAALALEL----G-------------LDLEEIAAGLKELKPVKGRLEVILLA--------- 325 (451)
T ss_pred eEEEEecCCcHhHHHHHHHHHHHHHHc----C-------------CCHHHHHHHHHhcCCCCccceeEecC---------
Confidence 114889999999999999999999998 7 24789999999998 89999954443
Q ss_pred cccCCCCeEEEEe-cCCCHHHHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhccccccccccccccccCccEE
Q 007911 346 FENSSGELIFYLD-GAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQI 424 (585)
Q Consensus 346 ~~~~~~~~~vilD-gAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 424 (585)
+|.++|.| |.-||+||+++++.+.... ..+.|
T Consensus 326 -----~g~~iIdD~YNAnp~sm~aai~~l~~~~------------------------------------------~~~~i 358 (451)
T COG0770 326 -----NGKTLIDDSYNANPDSMRAALDLLAALP------------------------------------------GRKGI 358 (451)
T ss_pred -----CCcEEEEcCCCCCHHHHHHHHHHHhhCc------------------------------------------cCCcE
Confidence 46778888 5999999999999887651 11229
Q ss_pred EEEecCCC--CChhhhhHHHHHHhhhcCCCccEEEEeCCC
Q 007911 425 LLFNCMEA--RHPQVLLPRLVSTCASSGTHFSKALFVPSV 462 (585)
Q Consensus 425 lvFg~~~~--Rd~~~ll~~l~~~~~~~~~~fd~~if~~~~ 462 (585)
+|.|.|.+ .+...+.+.+.+.+... .+|.++++.+.
T Consensus 359 ~VlGdM~ELG~~s~~~H~~v~~~~~~~--~~d~v~~~G~~ 396 (451)
T COG0770 359 AVLGDMLELGEESEELHEEVGEYAVEA--GIDLVFLVGEL 396 (451)
T ss_pred EEeCChhhhCccHHHHHHHHHHHHHhc--CceEEEEEccc
Confidence 99999987 55678888888877644 38999998754
No 37
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=99.98 E-value=1.7e-31 Score=288.29 Aligned_cols=250 Identities=22% Similarity=0.285 Sum_probs=188.1
Q ss_pred CccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCC
Q 007911 75 ELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMP 154 (585)
Q Consensus 75 ~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~p 154 (585)
..|+|+||||||||||++||++||++.|+++.+-+.. |. |
T Consensus 109 ~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNI------------G~----------------------------p 148 (448)
T COG0771 109 EAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNI------------GT----------------------------P 148 (448)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHHhcCCCceecccc------------Cc----------------------------c
Confidence 4579999999999999999999999999987553322 11 1
Q ss_pred CHHHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccCCCC-cEE
Q 007911 155 PLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQI-PAF 233 (585)
Q Consensus 155 s~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~g~-~aV 233 (585)
..+++. .....|+.|+|+++- .++.+.-+ +|.+++||||+.||+|||| ++|+|+.+|..|++... .+|
T Consensus 149 -~l~~~~-------~~~~~d~~VlElSSf-QL~~~~~~-~P~iavilNi~~DHLD~H~-s~e~Y~~aK~~i~~~~~~~~V 217 (448)
T COG0771 149 -ALELLE-------QAEPADVYVLELSSF-QLETTSSL-RPEIAVILNISEDHLDRHG-SMENYAAAKLRILEGQTEVAV 217 (448)
T ss_pred -HHHhhc-------ccCCCCEEEEEcccc-ccccCccC-CccEEEEecCCHHHhhhcc-CHHHHHHHHHHHHcCCccEEE
Confidence 112111 134789999999887 44545433 8999999999999999999 99999999999999777 799
Q ss_pred eeCCchHHHHHHHHHHHhcCccEEEecc---c-----chh---------hhhcccccCcchhhHhhHHHHHHHHHHHHHh
Q 007911 234 TVPQLSEAMSVLQDRALELMVPLEVAAP---L-----DIE---------KLKRLELSLSGDHQLVNAGLAVSLSECWLRR 296 (585)
Q Consensus 234 ~~~qd~~~~~vl~~~a~~~~~~l~~~~~---~-----~~~---------~~~~~~l~L~G~hq~~Na~lAia~a~~ll~~ 296 (585)
+|.||+.+.....+. ....+..+.. . ... ....-.++++|.||+.|+++|+|+|+..
T Consensus 218 in~dd~~~~~~~~~~---~~~~~~~fs~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~l~G~hn~~N~lAa~a~a~~~--- 291 (448)
T COG0771 218 INADDAYLKTLADEA---TKARVIWFSFGEPLADGDYIYDGKLVFKGEKLLPADELKLPGAHNLENALAALALARAL--- 291 (448)
T ss_pred EeCCcHHHhhhhhhc---ccceeEEEEccccccccceeecchhccccccccchhhcCCcchhhHHHHHHHHHHHHHc---
Confidence 999998765433322 1222222211 0 000 0123367899999999999999999998
Q ss_pred cCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCCCCeEEEEec-CCCHHHHHHHHHHHH
Q 007911 297 TGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDG-AHTAESMEACAKWFS 374 (585)
Q Consensus 297 ~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilDg-AHnp~sl~a~l~~~~ 374 (585)
| ..++.+.++|.+|+ +++|||.+... +|+.||.|. |.|+++..+++..|.
T Consensus 292 -g-------------v~~e~i~~~L~~F~gl~HR~e~v~~~--------------~gv~f~NDSKATN~~At~~AL~~~~ 343 (448)
T COG0771 292 -G-------------VPPEAILEALSSFTGLPHRLEFVGEK--------------DGVLFINDSKATNVDATLAALSGFD 343 (448)
T ss_pred -C-------------CCHHHHHHHHHhCCCCCcceEEEEec--------------CCEEEecCCCCCCHHHHHHHHHcCC
Confidence 7 24799999999999 99999999987 589999998 999999999999887
Q ss_pred hhhccCCCCCCccccccccccchhHHHhhccccccccccccccccCccEEEEEec
Q 007911 375 SVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNC 429 (585)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~ 429 (585)
..+ .++ .||++++.+++.|.. ...+..+.+++||.
T Consensus 344 ~~v-------~lI-~GG~~Kg~df~~L~~------------~~~~~~~~~~~~G~ 378 (448)
T COG0771 344 GPV-------ILI-AGGDDKGADFSPLAE------------ILAKVIKKLVLIGE 378 (448)
T ss_pred CCE-------EEE-ECCCCCCCChhHHHH------------HhhhcceEEEEeCC
Confidence 221 233 689999999998842 22333456888884
No 38
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=1.2e-29 Score=271.79 Aligned_cols=255 Identities=20% Similarity=0.239 Sum_probs=198.4
Q ss_pred CccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCC
Q 007911 75 ELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMP 154 (585)
Q Consensus 75 ~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~p 154 (585)
....|+|+||+|||||++||+++|.++|+..+ +-|+|.+-.-. ++.
T Consensus 106 ~~~~iaVaGTHGKTTTTsmla~vl~~~gldPt-------------f~iGG~~~~~g----------------~na----- 151 (459)
T COG0773 106 FRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPT-------------FLIGGILKNFG----------------TNA----- 151 (459)
T ss_pred CCeeEEEeCCCCchhHHHHHHHHHHhCCCCCE-------------EEECcccccCC----------------ccc-----
Confidence 35799999999999999999999999998754 33444321100 000
Q ss_pred CHHHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccC---CCCc
Q 007911 155 PLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFK---PQIP 231 (585)
Q Consensus 155 s~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k---~g~~ 231 (585)
..-.-++.|.|+ .++|+.-+..+|.++|||||..||+|++| ++++|..+...+++ ..+.
T Consensus 152 --------------~~g~~~~fV~EA---DEsD~sFl~~~P~~aIvTNid~DH~D~y~-~~~~i~~~F~~f~~~vp~~G~ 213 (459)
T COG0773 152 --------------RLGSGDYFVAEA---DESDSSFLHYNPRVAIVTNIEFDHLDYYG-DLEAIKQAFHHFVRNVPFYGR 213 (459)
T ss_pred --------------ccCCCceEEEEe---cccccccccCCCCEEEEeCCCcchhhhhC-CHHHHHHHHHHHHHhCCccce
Confidence 012338999999 89999888889999999999999999999 99999887777665 4556
Q ss_pred EEeeCCchHHHHHHHHHHHhcCccEEEecc-------------------cch----hhhhcccccCcchhhHhhHHHHHH
Q 007911 232 AFTVPQLSEAMSVLQDRALELMVPLEVAAP-------------------LDI----EKLKRLELSLSGDHQLVNAGLAVS 288 (585)
Q Consensus 232 aV~~~qd~~~~~vl~~~a~~~~~~l~~~~~-------------------~~~----~~~~~~~l~L~G~hq~~Na~lAia 288 (585)
+|++.|||...+++... +..+++.++. |+. ..+.++.++++|.||+.||++|++
T Consensus 214 ~v~~~dd~~l~~l~~~~---~~~~v~tyG~~~~ad~~a~ni~~~~~~~~F~V~~~g~~~~~~~l~~pG~HNvlNAlaaia 290 (459)
T COG0773 214 AVVCGDDPNLRELLSRG---CWSPVVTYGFDDEADWRAENIRQDGSGTTFDVLFRGEELGEVKLPLPGRHNVLNALAAIA 290 (459)
T ss_pred EEEECCCHHHHHHHhcc---cCCcEEeecCCCcCcEEEEEeEEeccccEEEEEEcCceeEEEEEcCCchhhHHHHHHHHH
Confidence 89999999877766533 3333333321 111 123568899999999999999999
Q ss_pred HHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCCCCeEEEEecCCCHHHHH
Q 007911 289 LSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESME 367 (585)
Q Consensus 289 ~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilDgAHnp~sl~ 367 (585)
+|..+ | ..++.|+++|++|+ +..|||+.... ++.++|.||||+|..++
T Consensus 291 ~a~~~----G-------------i~~~~i~~aL~~F~GvkRRfe~~g~~--------------~~~~viDDYaHHPtEI~ 339 (459)
T COG0773 291 VAREL----G-------------IDPEAIAEALASFQGVKRRFELKGEV--------------NGVTVIDDYAHHPTEIK 339 (459)
T ss_pred HHHHc----C-------------CCHHHHHHHHHhCCCcceeeEEeeeE--------------CCEEEEecCCCCHHHHH
Confidence 99988 7 34789999999999 99999988876 46899999999999999
Q ss_pred HHHHHHHhhhccCCCCCCccccccccccchhHHHhhcccccccccccccccc-CccEEEEEecCCCCChhhhhHHHHHHh
Q 007911 368 ACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANK-ISKQILLFNCMEARHPQVLLPRLVSTC 446 (585)
Q Consensus 368 a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ilvFg~~~~Rd~~~ll~~l~~~~ 446 (585)
++++.++... + .+|+|+||..........+++.+.+.+
T Consensus 340 aTL~aaR~~~-----------------------------------------~~~~rIvaifQPHrySRt~~~~~dF~~~l 378 (459)
T COG0773 340 ATLAAARQKV-----------------------------------------PGGKRIVAVFQPHRYSRTRDLLDDFAKAL 378 (459)
T ss_pred HHHHHHHHhc-----------------------------------------CCCceEEEEECCCchHhHHHHHHHHHHHH
Confidence 9999988773 2 368999999887777778888888776
Q ss_pred hhcCCCccEEEEeC
Q 007911 447 ASSGTHFSKALFVP 460 (585)
Q Consensus 447 ~~~~~~fd~~if~~ 460 (585)
. ..|.+++++
T Consensus 379 ~----~AD~v~l~~ 388 (459)
T COG0773 379 S----DADEVILLD 388 (459)
T ss_pred h----cCCEEEEec
Confidence 3 468888775
No 39
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=3.7e-30 Score=280.81 Aligned_cols=208 Identities=19% Similarity=0.209 Sum_probs=156.5
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCCC
Q 007911 76 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPP 155 (585)
Q Consensus 76 l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~ps 155 (585)
.++|+||||||||||+.||++||+.+|.++++-++. | .|.
T Consensus 108 ~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gni------------G----------------------------~~~ 147 (438)
T PRK04663 108 KPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNI------------G----------------------------VPA 147 (438)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEccc------------C----------------------------HHH
Confidence 479999999999999999999999999887543321 1 121
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccCCCCcEEee
Q 007911 156 LFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTV 235 (585)
Q Consensus 156 ~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~g~~aV~~ 235 (585)
..+...+.|++|+|+|+.+. +.+..+ +|+++|||||+.||+|+|| |+|+|+.+|..||+....+|+|
T Consensus 148 ----------~~~~~~~~~~~V~E~ss~~l-~~~~~~-~p~iavitNi~~dHld~~g-s~e~y~~aK~~i~~~~~~~v~n 214 (438)
T PRK04663 148 ----------LDLLEQDAELYVLELSSFQL-ETTSSL-KLKAAAFLNLSEDHMDRYQ-GMEDYRQAKLRIFDHAELAVVN 214 (438)
T ss_pred ----------HhhhcCCCCEEEEEcChhhh-ccCccc-CCCEEEEecCChhhCcccC-CHHHHHHHHHHHHhCCCEEEEe
Confidence 00123467999999998863 334444 7999999999999999999 9999999999999876678999
Q ss_pred CCchHHHHHHHHHHHhcCccEEEec----cc----------chh----hhhcccccCcchhhHhhHHHHHHHHHHHHHhc
Q 007911 236 PQLSEAMSVLQDRALELMVPLEVAA----PL----------DIE----KLKRLELSLSGDHQLVNAGLAVSLSECWLRRT 297 (585)
Q Consensus 236 ~qd~~~~~vl~~~a~~~~~~l~~~~----~~----------~~~----~~~~~~l~L~G~hq~~Na~lAia~a~~ll~~~ 297 (585)
.||+....... ..+++.++ .+ ... .+..+.++++|.||++|+++|++++..+
T Consensus 215 ~dd~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hNv~NalaAia~a~~l---- 284 (438)
T PRK04663 215 RDDKQTYPDHA------ELQLVTFGFDQQDFGLAQHQGREWLADNGQPVLASAELKLVGRHNVANVLVVLALLDAA---- 284 (438)
T ss_pred CCCHHHHhhhc------CCcEEEEecCCCCCCeEecCCeEEEEeCCceeeehhhcCCcchhhHHHHHHHHHHHHHc----
Confidence 99986432211 11222211 00 000 0123678899999999999999999987
Q ss_pred CCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCCCCeEEEEe-cCCCHHHHHHHHHHH
Q 007911 298 GNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLD-GAHTAESMEACAKWF 373 (585)
Q Consensus 298 g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilD-gAHnp~sl~a~l~~~ 373 (585)
| ..++++.++|++|+ ++||||++... ++..+|.| +++||+|+.++++.+
T Consensus 285 G-------------i~~~~i~~~L~~f~g~~~R~e~v~~~--------------~g~~~idDs~~tn~~s~~~Al~~~ 335 (438)
T PRK04663 285 G-------------VDYRKALDALKSYTGLTHRCQVVADN--------------HGIKWVNDSKATNVASTLAALSGL 335 (438)
T ss_pred C-------------CCHHHHHHHHHhCCCCCCceEEeeee--------------CCcEEEeCCCcCCHHHHHHHHHhc
Confidence 7 24789999999998 99999999654 35667766 489999999998854
No 40
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.97 E-value=2.4e-29 Score=276.02 Aligned_cols=248 Identities=19% Similarity=0.196 Sum_probs=176.5
Q ss_pred CccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCC
Q 007911 75 ELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMP 154 (585)
Q Consensus 75 ~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~p 154 (585)
+.++|+||||||||||+.||++||+..|+++..-++. |.|+
T Consensus 116 ~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~~gni------------G~p~--------------------------- 156 (458)
T PRK01710 116 PAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGNI------------GTPL--------------------------- 156 (458)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHhCCCCEEECCcc------------ChhH---------------------------
Confidence 3579999999999999999999999999876321110 1111
Q ss_pred CHHHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccC---CCCc
Q 007911 155 PLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFK---PQIP 231 (585)
Q Consensus 155 s~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k---~g~~ 231 (585)
+. . +. ...+.|++|+|+|+...-+. .+ +|+++|||||+.||+|+|| |+|+|+.+|..||+ ++..
T Consensus 157 --~~---~--~~--~~~~~~~~VlE~~~~~~~~~-~~--~PdiaViTNI~~dHld~~~-s~e~~~~aK~~i~~~~~~~~~ 223 (458)
T PRK01710 157 --FS---N--IE--EIKEEDKVVLELSSFQLMTM-DV--SPEVAVVTNLSPNHLDVHK-DMEEYIDAKKNIFKYQSENDL 223 (458)
T ss_pred --HH---H--Hh--hCCCCCEEEEEcCccccccC-CC--CCCEEEEecCChhhccccC-CHHHHHHHHHHHHhcCCCCCE
Confidence 10 0 00 11257999999999743322 23 8999999999999999999 99999999999986 4567
Q ss_pred EEeeCCchHHHHHHHHHHHhcCccEEEec--c------c------chh--hh-hcccccCcchhhHhhHHHHHHHHHHHH
Q 007911 232 AFTVPQLSEAMSVLQDRALELMVPLEVAA--P------L------DIE--KL-KRLELSLSGDHQLVNAGLAVSLSECWL 294 (585)
Q Consensus 232 aV~~~qd~~~~~vl~~~a~~~~~~l~~~~--~------~------~~~--~~-~~~~l~L~G~hq~~Na~lAia~a~~ll 294 (585)
+|+|.||+....+.. ....+++.++ . + ... .+ ..+.++++|.||++|+++|++++...
T Consensus 224 ~v~n~Dd~~~~~~~~----~~~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hnv~NalaA~a~a~~~- 298 (458)
T PRK01710 224 LVLNKDNEITNGMEK----EAKGDVVKFSRKEKVYEGAYLKNGKLYIRGKEVCKKDDIKLKGMHNVENLLAAFCAVNDD- 298 (458)
T ss_pred EEEeCCcHHHHHHHh----hcCCcEEEEeCCCCCCCceEEeCCEEEEcCceEEEhhhcCCccHhHHHHHHHHHHHHHhC-
Confidence 899999986544321 1112222221 0 0 000 01 13567899999999999999998542
Q ss_pred HhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCCCCeEEEEe-cCCCHHHHHHHHHH
Q 007911 295 RRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLD-GAHTAESMEACAKW 372 (585)
Q Consensus 295 ~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilD-gAHnp~sl~a~l~~ 372 (585)
..++.+.++|++|. ++||||.+... +|..+|.| |+|||+|+.++++.
T Consensus 299 -----------------i~~~~i~~~L~~f~~~~~R~e~~~~~--------------~g~~~i~Dsy~~np~s~~~al~~ 347 (458)
T PRK01710 299 -----------------VSIESMKKVATTFSGVEHRCEFVREI--------------NGVKYYNDSIASSPTRTLAGLKA 347 (458)
T ss_pred -----------------CCHHHHHHHHHhCCCCCcceEEEEEE--------------CCEEEecccccCCHHHHHHHHHh
Confidence 23688999999998 99999998753 36788888 89999999999873
Q ss_pred HHhhhccCCCCCCccccccccccchhHHHhhccccccccccccccccCccEEEEEecCCCCChhhhhHHHHHHhhhcCCC
Q 007911 373 FSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTH 452 (585)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~~~Rd~~~ll~~l~~~~~~~~~~ 452 (585)
+. .++|+|+| +.|....+..|.+.+. ..
T Consensus 348 ~~----------------------------------------------~~~i~IlG---g~~~~~~~~~l~~~~~---~~ 375 (458)
T PRK01710 348 FE----------------------------------------------KPVILIAG---GYDKKIPFEPLAEEGY---EK 375 (458)
T ss_pred CC----------------------------------------------CCEEEEeC---CcCCCCCHHHHHHHHH---hh
Confidence 31 14788888 2455566667766553 23
Q ss_pred ccEEEEeCCC
Q 007911 453 FSKALFVPSV 462 (585)
Q Consensus 453 fd~~if~~~~ 462 (585)
++.++++...
T Consensus 376 ~~~vi~~G~~ 385 (458)
T PRK01710 376 IKTLILMGAT 385 (458)
T ss_pred ccEEEEECCC
Confidence 7889888654
No 41
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.96 E-value=2e-28 Score=265.74 Aligned_cols=204 Identities=17% Similarity=0.102 Sum_probs=142.2
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCCC
Q 007911 76 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPP 155 (585)
Q Consensus 76 l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~ps 155 (585)
.++|+||||||||||+.||+++|+..|.++.+.++.+ .|.
T Consensus 102 ~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~GniG----------------------------------------~p~ 141 (418)
T PRK00683 102 YPSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGNIG----------------------------------------IPI 141 (418)
T ss_pred CCEEEEECCCChHHHHHHHHHHHHHcCCCeEEECCcC----------------------------------------HHH
Confidence 4789999999999999999999999998765554421 121
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccCCCCcEEee
Q 007911 156 LFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTV 235 (585)
Q Consensus 156 ~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~g~~aV~~ 235 (585)
++ . ..+.|++|+|+|+.+.-+.-..+..|+++|||||+.||+|+|| |+|+|+.+|+.||.. +.+
T Consensus 142 -l~--------~--~~~~~~~V~E~~s~~~~~~~~~~~~~~iavitNi~~dHld~~~-s~e~y~~aK~~i~~~----~~~ 205 (418)
T PRK00683 142 -LD--------G--MQQPGVRVVEISSFQLADQEKSYPVLSGGMILNISDNHLDYHG-NLSAYFQAKQNIAKC----LRN 205 (418)
T ss_pred -HH--------H--hhcCCEEEEEechhhhCcCcccCCCccEEEEecCChhHhccCC-CHHHHHHHHHHHHHh----hhC
Confidence 11 1 1246899999999854333334335589999999999999999 999999999999862 112
Q ss_pred CCchHHHHHHHHHHHhcCccEEEe-cccchhhhhcccccCcchhhHhhHHHHHHHHHH-HHHhcCCCcccccCCCCCCCc
Q 007911 236 PQLSEAMSVLQDRALELMVPLEVA-APLDIEKLKRLELSLSGDHQLVNAGLAVSLSEC-WLRRTGNWEKVSHNDGQGADL 313 (585)
Q Consensus 236 ~qd~~~~~vl~~~a~~~~~~l~~~-~~~~~~~~~~~~l~L~G~hq~~Na~lAia~a~~-ll~~~g~~~~~~~~~~~~~~~ 313 (585)
.++... .. ....+...... ..+.........++++|.||++|+++|++++.. + | ..
T Consensus 206 ~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~hn~~Na~aA~a~~~~l~----g-------------~~ 263 (418)
T PRK00683 206 PDDLWV----GD-ERSYGHSYLEYVQEIMRLLDKGSALKPLYLHDRYNYCAAYALANEVF----P-------------IS 263 (418)
T ss_pred cccccc----cc-cCCcCceeecCcchhhhhhccccccCCCccchHHHHHHHHHHHHHhc----C-------------CC
Confidence 221100 00 00001010000 000000001235678999999999999999987 4 5 24
Q ss_pred HHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCCCCeEEEEe-cCCCHHHHHHHHH
Q 007911 314 PDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLD-GAHTAESMEACAK 371 (585)
Q Consensus 314 ~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilD-gAHnp~sl~a~l~ 371 (585)
.+++.++|+++. |+||||++... ++..+|.| +++||+|++++++
T Consensus 264 ~~~i~~~l~~~~~~~~R~e~v~~~--------------~g~~~i~Ds~~t~~~s~~~al~ 309 (418)
T PRK00683 264 EESFLEAVATFEKPPHRMEYLGEK--------------DGVHYINDSKATTVSAVEKALL 309 (418)
T ss_pred HHHHHHHHHhCCCCCCceEEEeec--------------CCeEEEEcCCCCCHHHHHHHHH
Confidence 688999999986 99999999754 35788898 7999999999887
No 42
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=99.94 E-value=4.6e-25 Score=238.34 Aligned_cols=196 Identities=18% Similarity=0.178 Sum_probs=139.8
Q ss_pred cEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCCCH
Q 007911 77 KVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPL 156 (585)
Q Consensus 77 ~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~ps~ 156 (585)
++|+||||||||||++|+++||+++|..+|-. | |. |
T Consensus 90 ~~i~ITGT~GKTTTt~ml~~iL~~~g~~~~gn-------------i-G~----------------------------p-- 125 (401)
T PRK03815 90 FSIWISGTNGKTTTTQMTTHLLEDFGAVSGGN-------------I-GT----------------------------P-- 125 (401)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHCCCcEEEE-------------e-cH----------------------------h--
Confidence 49999999999999999999999988433100 0 11 1
Q ss_pred HHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccC---CCCcEE
Q 007911 157 FQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFK---PQIPAF 233 (585)
Q Consensus 157 Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k---~g~~aV 233 (585)
++ . ...+.|++|+|+|+.+ ++.+.++ +|+++|||||+.||+|+|| |+|+|+.+|..||+ ++..+|
T Consensus 126 ---~~-----~-~~~~~~~~V~E~ss~~-~~~~~~~-~p~iavitNi~~dHld~~~-s~e~~~~~k~~i~~~~~~~~~~v 193 (401)
T PRK03815 126 ---LA-----E-LDKNAKIWVLETSSFT-LHYTNKA-KPNIYLLLPITPDHLSWHG-SFENYVKAKLKPLKRMNEGDVAI 193 (401)
T ss_pred ---HH-----h-cCCCCCEEEEECChHH-hhCCccC-CCcEEEEcCCcccchhhcC-CHHHHHHHHHHHHhCCCcCCEEE
Confidence 00 0 1345699999998765 4556666 7999999999999999999 99999999999987 356688
Q ss_pred eeCCchHHHHHHHHHHHhcCccEEEeccc-chh---hhhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCC
Q 007911 234 TVPQLSEAMSVLQDRALELMVPLEVAAPL-DIE---KLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQ 309 (585)
Q Consensus 234 ~~~qd~~~~~vl~~~a~~~~~~l~~~~~~-~~~---~~~~~~l~L~G~hq~~Na~lAia~a~~ll~~~g~~~~~~~~~~~ 309 (585)
+|.||+.. . ...+++.++.- +.. .+..-.+.+.+.| +.|+++|++++..+ |.
T Consensus 194 ~n~dd~~~----~-----~~~~~~~fg~~~~~~~~~~~~~~~~~~~~~~-~~NalaA~a~a~~~----G~---------- 249 (401)
T PRK03815 194 LPKKFKNT----P-----TKAQKIFYEDEEDLAEKFGIDSEKINFKGPF-LLDALLALAVYKIL----FD---------- 249 (401)
T ss_pred Eecccccc----c-----cCCcEEEEecCCccccceeEehHhcCCchHH-HHHHHHHHHHHHHh----Cc----------
Confidence 99888742 1 11233333210 000 0000112344554 99999999999887 51
Q ss_pred CCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCCCCeEEEEec-CCCHHHHHHHHH
Q 007911 310 GADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDG-AHTAESMEACAK 371 (585)
Q Consensus 310 ~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilDg-AHnp~sl~a~l~ 371 (585)
+.+.++|++|+ +++|||++... +|..||.|+ +.||+|+.++++
T Consensus 250 -----~~~~~~L~~f~~~~~R~e~~~~~--------------~gv~~idDs~~tn~~a~~~al~ 294 (401)
T PRK03815 250 -----ELDYERLNAFKIGKHKLEEFRDK--------------QGRLWVDDSKATNVDATLQALK 294 (401)
T ss_pred -----HHHHHHHHhCCCCCceEEEEEEE--------------CCEEEEECCCCCCHHHHHHHHH
Confidence 33557899998 99999999754 368888886 889998777766
No 43
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.93 E-value=6e-25 Score=253.01 Aligned_cols=219 Identities=25% Similarity=0.270 Sum_probs=159.8
Q ss_pred HHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHH
Q 007911 60 MSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWEC 139 (585)
Q Consensus 60 ~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v 139 (585)
...++..|-...+..++|+|+||||||||||++|+++||+..|+++|+.+|++ +.+|+..+...+.
T Consensus 464 ~~~Iid~L~~~~~~~ripiIaVTGTnGKTTTt~lla~iL~~~G~~vg~~~t~G-------~~i~~~~i~~gd~------- 529 (727)
T PRK14016 464 GEAIVDMLFPEGDDGRIPIVAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDG-------VYIDGRLIDKGDC------- 529 (727)
T ss_pred HHHHHHHhcccCCCCceeEEEEECCCCchHHHHHHHHHHHHcCCeEEEECCCC-------EEECCEEeccccc-------
Confidence 35566665433344578999999999999999999999999999999999988 7788876643210
Q ss_pred HHhhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccC-CCHHHH
Q 007911 140 WHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLG-NTLNDI 218 (585)
Q Consensus 140 ~~~l~~~~~~~~~~ps~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG-~Tle~I 218 (585)
..|...+ ..+....+|++|+|+|.+|.+...--+.+|+++|||||+.||++++| +|+|+|
T Consensus 530 ------------t~p~s~~-------~ll~~~~~d~aVlE~s~~~il~~gl~~~~pdvaVvTNI~~DHL~~~~~~t~E~~ 590 (727)
T PRK14016 530 ------------TGPKSAR-------RVLMNPDVEAAVLETARGGILREGLAYDRCDVGVVTNIGEDHLGLGGINTLEDL 590 (727)
T ss_pred ------------cCHHHHH-------HHhcCCCCCEEEEEcCCCchhhcCCcccccCeEEEcCCCHHHhhccCCCCHHHH
Confidence 1121111 12356789999999999887754443447999999999999999886 699999
Q ss_pred HHHHhcccC---CCCcEEeeCCchHHHHHHHHHHHhcCccEEEec--c-cc--------------h---------h----
Q 007911 219 AFHKAGIFK---PQIPAFTVPQLSEAMSVLQDRALELMVPLEVAA--P-LD--------------I---------E---- 265 (585)
Q Consensus 219 A~~KagI~k---~g~~aV~~~qd~~~~~vl~~~a~~~~~~l~~~~--~-~~--------------~---------~---- 265 (585)
+..|+.||+ +++.+|+|.||+.+..+ +..+.+.++.++ + .+ . .
T Consensus 591 ~~~K~~i~~~v~~~g~aVlNaDD~~~~~~----~~~~~~~vi~fs~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~ 666 (727)
T PRK14016 591 AKVKRVVVEAVKPDGYAVLNADDPMVAAM----AERCKGKVIFFSMDPDNPVIAEHRAQGGRAVYVEGDYIVLAEGGWEI 666 (727)
T ss_pred HHHHHHHHhhhCCCCeEEEcCCCHHHHHH----HHhCCCcEEEEeCCCCChHHHHHHHhCCceEEEeCCEEEEEeCCcce
Confidence 999999985 56679999999865443 222333333221 0 00 0 0
Q ss_pred ---hhhcccccCcc--hhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-----CCCcEEE
Q 007911 266 ---KLKRLELSLSG--DHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-----LLGRAQI 332 (585)
Q Consensus 266 ---~~~~~~l~L~G--~hq~~Na~lAia~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-----~pGR~E~ 332 (585)
....+.+.+.| .||++|+++|+|++..+ | ..++.|.++|++|. .||||+.
T Consensus 667 ~~~~~~~i~l~~~G~~~hnv~NalAAiAaa~~l----G-------------i~~~~I~~~L~sF~~~~~~~pGR~n~ 726 (727)
T PRK14016 667 RIISLADIPLTLGGKAGFNIENALAAIAAAWAL----G-------------IDIELIRAGLRTFVSDAAQAPGRFNL 726 (727)
T ss_pred eeccccccceecCCcchhhHHHHHHHHHHHHHc----C-------------CCHHHHHHHHHhcCCCccCCCccccc
Confidence 00123343466 79999999999999988 7 24789999999996 7999985
No 44
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=99.92 E-value=3.3e-24 Score=207.24 Aligned_cols=160 Identities=25% Similarity=0.333 Sum_probs=113.0
Q ss_pred EecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCCCHHHHH
Q 007911 81 VSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFL 160 (585)
Q Consensus 81 VTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~l 160 (585)
||||||||||++||++||+++|++++.+++- +..+.+
T Consensus 1 ITGT~GKTTTt~ml~~iL~~~g~~~~~~~~~------------------------------------------~~~~~~- 37 (188)
T PF08245_consen 1 ITGTNGKTTTTRMLAHILSAAGKVVGTIGNT------------------------------------------NNQIGL- 37 (188)
T ss_dssp EESSSSHHHHHHHHHHHHHHTTEEEEEESSC------------------------------------------HHHHHH-
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCcccccccc------------------------------------------cchHHH-
Confidence 8999999999999999999999988877631 001111
Q ss_pred HHHHHHHhhhCCCcEEEEeecCCCCcc--ccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccC---CCCcEEee
Q 007911 161 TVLAFKIFVCEQVDVAIIEVGLGGEKD--STNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFK---PQIPAFTV 235 (585)
Q Consensus 161 TllA~~~F~~~~vd~aVlEvG~gGr~D--~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k---~g~~aV~~ 235 (585)
...+..+.+.++|++|+|+|+++..+ ..+++ +|+++|||||+.||+++++ |+++|+.+|+.+++ ++..+|+|
T Consensus 38 -~~~~~~~~~~~~~~~V~E~~~~~~~~~~l~~~~-~p~i~viTni~~dH~~~~~-s~~~~~~~k~~~~~~~~~~~~~v~n 114 (188)
T PF08245_consen 38 -PLLLLNAREGGADIAVLEVSEGGLGDERLSFLL-KPDIAVITNIGPDHLDRFG-SIEEYAEAKAKIFRGLKPGGVAVLN 114 (188)
T ss_dssp -HHHHHHHHHTTSSEEEEEESSSCCCTSTTSGGS-BESEEEE----SSSHCCTS-SHHHHHHHHHGGHTTTSTTSEEEEE
T ss_pred -HHHHhhhcccccceeeeeccCCccccceeeeee-ehheeeeceecccccccCC-CHHHHHHHHHhhhhhcccceEEEec
Confidence 11133345579999999999994332 22323 7999999999999999997 99999999999998 56789999
Q ss_pred CCchHHHHHHHHHHHhcCccEEEecc-------------------cch----hhhhcccccCcchhhHhhHHHHHHHH
Q 007911 236 PQLSEAMSVLQDRALELMVPLEVAAP-------------------LDI----EKLKRLELSLSGDHQLVNAGLAVSLS 290 (585)
Q Consensus 236 ~qd~~~~~vl~~~a~~~~~~l~~~~~-------------------~~~----~~~~~~~l~L~G~hq~~Na~lAia~a 290 (585)
.||+...+.+. ..+.+++.++. +.. .....+.++++|.||++|+++|+++|
T Consensus 115 ~dd~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~l~G~hn~~NalaA~a~a 188 (188)
T PF08245_consen 115 ADDPELAEIAA----NSKCKVITFGLDNSADIRASNISYSEEGGRFRIISYNGEEFEIELPLPGKHNVENALAAIAAA 188 (188)
T ss_dssp TTSHHHHHHHH----HHTTTEEEEESSSSSEEEEEEEEEETTEEEEEEEEETTEEEEEEESSSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH----hcCCcEEEeccCcccceeeeeEEEecCCcEEEEEEecCceEEEEecCCCHHHHHHHHHHHHhC
Confidence 99985444333 33333333321 000 01124788999999999999999986
No 45
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=99.24 E-value=1.8e-11 Score=105.28 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=57.5
Q ss_pred CCCcEEEEecccCCCCCCCccccCCCCeEEEEecCCCHHHHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhcc
Q 007911 326 LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNG 405 (585)
Q Consensus 326 ~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilDgAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 405 (585)
||||||++... +++.||+||||||+|+++++++++...
T Consensus 1 vpgR~e~v~~~--------------~~~~vi~D~ahNp~s~~a~l~~l~~~~---------------------------- 38 (91)
T PF02875_consen 1 VPGRMEVVREP--------------NGPTVIDDYAHNPDSIRALLEALKELY---------------------------- 38 (91)
T ss_dssp ETTSSEEEEEE--------------TTEEEEEET--SHHHHHHHHHHHHHHC----------------------------
T ss_pred CCCCcEEEeeC--------------CCcEEEEECCCCHHHHHHHHHHHHHhc----------------------------
Confidence 89999999875 468999999999999999999998762
Q ss_pred ccccccccccccccCccEEEEEecCCC---CChhhhhHHHHHHhhhcCCCccEEEEeCCC
Q 007911 406 YIGHKMEKTKHANKISKQILLFNCMEA---RHPQVLLPRLVSTCASSGTHFSKALFVPSV 462 (585)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~ilvFg~~~~---Rd~~~ll~~l~~~~~~~~~~fd~~if~~~~ 462 (585)
+..++++|||++++ |+.+ ....+.+.+. ...+.++++++.
T Consensus 39 -------------~~~~~i~V~G~~~d~g~~~~~-~~~~~~~~~~---~~~d~vi~~~~~ 81 (91)
T PF02875_consen 39 -------------PKGRIIAVFGAMGDLGSKDKD-FHEEIGELAA---QLADVVILTGDN 81 (91)
T ss_dssp -------------TTSEEEEEEEEBTT-HTSHHH-CHHHHHHHHT---TCSSEEEEETSB
T ss_pred -------------cCCcEEEEEccccccccccHH-HHHHHHHHHH---hcCCEEEEcCCC
Confidence 34689999999888 6544 3344444443 236777777654
No 46
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.42 E-value=0.00075 Score=70.11 Aligned_cols=155 Identities=25% Similarity=0.257 Sum_probs=91.9
Q ss_pred HHHHHHHhCCCCcccCccEEEEecC--CCCchHHHHHHHHHHHCCCCeEEE----cCCcc--ccccceEEECCEecCHHH
Q 007911 60 MSMYLKILGLEDRIAELKVIHVSGT--KGKGSTCTFCEAILRECGFRTGLF----TSPHL--IDVRERFRINGLDITEDK 131 (585)
Q Consensus 60 ~~~~L~~Lg~~~p~~~l~vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~----tSPhL--~~~rERI~inG~~is~~~ 131 (585)
-+++|..+- ...-+-.+|+|||+ -||+|...-+-.-|+..|+||++. +||.= .=...|||.+.....+..
T Consensus 37 a~~ll~~l~--p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~v 114 (323)
T COG1703 37 ARELLRALY--PRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGV 114 (323)
T ss_pred HHHHHHHHh--hcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCe
Confidence 345555553 11234469999998 579999999999999999999987 45530 001222222221111111
Q ss_pred HHHHHHHHHHhhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEee-cCC-CCccccccccCCcEEEEcCCCccccc
Q 007911 132 FLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEV-GLG-GEKDSTNVIKEPVVCGVTSLGMDHME 209 (585)
Q Consensus 132 f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lTllA~~~F~~~~vd~aVlEv-G~g-Gr~D~Tnvi~~P~vavITNIg~DHld 209 (585)
|.+ ...+. +...-..--|..+...+-..++|++|+|+ |.| ++.|..+.. +..+++.+.
T Consensus 115 FiR----------s~~sr--G~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~a---Dt~~~v~~p----- 174 (323)
T COG1703 115 FIR----------SSPSR--GTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMA---DTFLVVMIP----- 174 (323)
T ss_pred EEe----------ecCCC--ccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhc---ceEEEEecC-----
Confidence 110 00000 11112222344445566678999999998 888 788888876 444443332
Q ss_pred ccCCCHHHHHHHHhcccCCCCcEEeeCCch
Q 007911 210 LLGNTLNDIAFHKAGIFKPQIPAFTVPQLS 239 (585)
Q Consensus 210 ~lG~Tle~IA~~KagI~k~g~~aV~~~qd~ 239 (585)
-.|+ ++-..|+|++.-+-.+|+|..|.
T Consensus 175 g~GD---~~Q~iK~GimEiaDi~vINKaD~ 201 (323)
T COG1703 175 GAGD---DLQGIKAGIMEIADIIVINKADR 201 (323)
T ss_pred CCCc---HHHHHHhhhhhhhheeeEeccCh
Confidence 2454 55556999999877788887664
No 47
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.58 E-value=0.017 Score=59.27 Aligned_cols=148 Identities=24% Similarity=0.194 Sum_probs=79.7
Q ss_pred HHHHHHHHhCCCCcccCccEEEEecC--CCCchHHHHHHHHHHHCCCCeEEE----cCCccccccceEEECCEecCHHHH
Q 007911 59 RMSMYLKILGLEDRIAELKVIHVSGT--KGKGSTCTFCEAILRECGFRTGLF----TSPHLIDVRERFRINGLDITEDKF 132 (585)
Q Consensus 59 ~~~~~L~~Lg~~~p~~~l~vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~----tSPhL~~~rERI~inG~~is~~~f 132 (585)
...++|+++- + ...+-.+|+|||+ -||+|...-+...|++.|++||+. +||. -+|..+.+.
T Consensus 14 ~~~~ll~~l~-~-~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~---------tGGAlLGDR-- 80 (266)
T PF03308_consen 14 EARELLKRLY-P-HTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPF---------TGGALLGDR-- 80 (266)
T ss_dssp HHHHHHHHHG-G-GTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGC---------C---SS--G--
T ss_pred HHHHHHHHHH-h-hcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCC---------CCCcccccH--
Confidence 5566777764 1 1234579999998 579999999999999999999987 4553 122222211
Q ss_pred HHHHHHHHHhhhhhcc-CC--------CCCCCHHHHHHHHHHHHhhhCCCcEEEEee-cCC-CCccccccccCCcEEEEc
Q 007911 133 LFYFWECWHLLRENVT-ED--------LPMPPLFQFLTVLAFKIFVCEQVDVAIIEV-GLG-GEKDSTNVIKEPVVCGVT 201 (585)
Q Consensus 133 ~~~f~~v~~~l~~~~~-~~--------~~~ps~Fe~lTllA~~~F~~~~vd~aVlEv-G~g-Gr~D~Tnvi~~P~vavIT 201 (585)
-|+..... ++ -+...-.--.|.-+...+-..+.|++++|+ |.| .+.|..++.+ -.+-|++
T Consensus 81 --------iRM~~~~~d~~vfIRS~atRG~lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD-~~v~v~~ 151 (266)
T PF03308_consen 81 --------IRMQELSRDPGVFIRSMATRGSLGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMAD-TVVLVLV 151 (266)
T ss_dssp --------GGCHHHHTSTTEEEEEE---SSHHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSS-EEEEEEE
T ss_pred --------HHhcCcCCCCCEEEeecCcCCCCCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcC-eEEEEec
Confidence 01111111 00 011111112233345566678999999998 888 6788777763 3344555
Q ss_pred CCCcccccccCCCHHHHHHHHhcccCCCCcEEeeCCc
Q 007911 202 SLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQL 238 (585)
Q Consensus 202 NIg~DHld~lG~Tle~IA~~KagI~k~g~~aV~~~qd 238 (585)
.-.=|-+.. .|+||+.-.-.+|+|..|
T Consensus 152 Pg~GD~iQ~----------~KaGimEiaDi~vVNKaD 178 (266)
T PF03308_consen 152 PGLGDEIQA----------IKAGIMEIADIFVVNKAD 178 (266)
T ss_dssp SSTCCCCCT----------B-TTHHHH-SEEEEE--S
T ss_pred CCCccHHHH----------HhhhhhhhccEEEEeCCC
Confidence 544444332 378888755567777654
No 48
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.04 E-value=0.06 Score=56.45 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=37.3
Q ss_pred HHHHHHHhCCCCcccCccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 007911 60 MSMYLKILGLEDRIAELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 60 ~~~~L~~Lg~~~p~~~l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~t 109 (585)
.+.+|+.+.. .....++|+|+|.+ ||||++..+...|...|++++++.
T Consensus 20 ~~~~~~~~~~--~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~ 69 (300)
T TIGR00750 20 AKQLLDRIMP--YTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIA 69 (300)
T ss_pred HHHHHHhCCc--ccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 5566776642 23456899999975 699999999999999999998765
No 49
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.13 E-value=0.23 Score=53.03 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=35.8
Q ss_pred HHHHHHHhCCCCcccCccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 007911 60 MSMYLKILGLEDRIAELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 60 ~~~~L~~Lg~~~p~~~l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~t 109 (585)
..++++++- + ...+-.+|+|+|.. ||||.+..+...|+..|++++++.
T Consensus 42 ~~~l~~~~~-~-~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~ 91 (332)
T PRK09435 42 AQELLDALL-P-HTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLA 91 (332)
T ss_pred HHHHHHHHh-h-cCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 345555553 1 12345699999986 699999999999999999998764
No 50
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=93.10 E-value=0.42 Score=52.18 Aligned_cols=54 Identities=20% Similarity=0.115 Sum_probs=44.6
Q ss_pred CChHHHHHHHHHhCCC---CcccCccEEEEe---cCCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 55 GKLQRMSMYLKILGLE---DRIAELKVIHVS---GTKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 55 ~~l~~~~~~L~~Lg~~---~p~~~l~vIhVT---GTnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
.+|+++.++.+.++.. .+..+.++|.|+ |=-|||||+.-|+..|...|+||-++
T Consensus 82 ytl~eI~~lr~~~~~~~~r~~~~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlI 141 (387)
T PHA02519 82 YTIDQISHMRDHFGNPNQRPDDKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLI 141 (387)
T ss_pred EcHHHHHHHHHHhhccccCcCCCCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 7899999999988743 134557899999 55679999999999999999999653
No 51
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=92.97 E-value=0.44 Score=51.96 Aligned_cols=54 Identities=20% Similarity=0.142 Sum_probs=44.8
Q ss_pred CChHHHHHHHHHhCCC---CcccCccEEEEe---cCCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 55 GKLQRMSMYLKILGLE---DRIAELKVIHVS---GTKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 55 ~~l~~~~~~L~~Lg~~---~p~~~l~vIhVT---GTnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
.+|++++++++.++.. .+..+.++|.|+ |=-||||||.-++..|...|+||.+.
T Consensus 82 ftL~ei~~lr~~~~~~~~r~~~~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlI 141 (388)
T PRK13705 82 YTIEQINHMRDVFGTRLRRAEDVFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLV 141 (388)
T ss_pred cCHHHHHHHHHhhcccccccCCCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEE
Confidence 7899999999888632 234567899999 66779999999999999999999654
No 52
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=91.26 E-value=1.9 Score=44.89 Aligned_cols=92 Identities=20% Similarity=0.224 Sum_probs=55.9
Q ss_pred HHHHHHhCCCCcccCccEEEEecC--CCCchHHHHHHHHHHHCCCC--eEEEcCCccccccceEEECCEecCHHHHHHHH
Q 007911 61 SMYLKILGLEDRIAELKVIHVSGT--KGKGSTCTFCEAILRECGFR--TGLFTSPHLIDVRERFRINGLDITEDKFLFYF 136 (585)
Q Consensus 61 ~~~L~~Lg~~~p~~~l~vIhVTGT--nGKgST~aml~sIL~~~G~k--vGl~tSPhL~~~rERI~inG~~is~~~f~~~f 136 (585)
...++.||-.+ ...--+|+|+|+ -||+|||.++..+|+..+-+ +-++++ ||--.+...+.+
T Consensus 68 ~~~~~~l~~~~-~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpm------------DGFhy~n~~L~~-- 132 (283)
T COG1072 68 AELLRFLGTNN-QQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTM------------DGFHYPNAVLDE-- 132 (283)
T ss_pred HHHHHHhccCC-CCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEec------------cccccCHhHhhh--
Confidence 44555555222 233358999998 58999999999999998765 555554 555555443321
Q ss_pred HHHHHhhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcE
Q 007911 137 WECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDV 175 (585)
Q Consensus 137 ~~v~~~l~~~~~~~~~~ps~Fe~lTllA~~~F~~~~vd~ 175 (585)
..+ ..-.+-|..|..-.++.|..-.+.+.+.
T Consensus 133 ----~gl----m~rKGfPeSyD~~~ll~fl~~vK~~~~~ 163 (283)
T COG1072 133 ----RGL----MARKGFPESYDVAALLRFLSDVKAGKPD 163 (283)
T ss_pred ----ccc----cccCCCCccccHHHHHHHHHHHhcCCCc
Confidence 001 1112457777776666666656655543
No 53
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=91.07 E-value=0.6 Score=51.91 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=30.5
Q ss_pred ccEEEEecCCC---CchHHHHHHHHHHHCCCCeEEEcC
Q 007911 76 LKVIHVSGTKG---KGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 76 l~vIhVTGTnG---KgST~aml~sIL~~~G~kvGl~tS 110 (585)
++.|-||||.+ ||+++.-|...|++.|++|+.|-.
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 46788888865 999999999999999999998864
No 54
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=90.83 E-value=0.56 Score=51.42 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=41.1
Q ss_pred CCChHHHHHHHHHhC-------------CCCcccCccEEEEe---cCCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 54 YGKLQRMSMYLKILG-------------LEDRIAELKVIHVS---GTKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 54 ~~~l~~~~~~L~~Lg-------------~~~p~~~l~vIhVT---GTnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
..+++++.++-+.++ ...|..+.++|.|+ |=-||||||.-|+..|...|+||.++
T Consensus 86 ~yt~~di~~lr~~l~~~~~~~~~~~~~~~r~~~~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlI 156 (405)
T PRK13869 86 FYTLGQINEIRQMLAGSTRGRESIDFVPHRRGSEHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAV 156 (405)
T ss_pred eecHHHHHHHHHHHHhhccccccccccCCCCCCCCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 366777666666554 11244567899999 55679999999999999999999653
No 55
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=90.00 E-value=0.76 Score=47.51 Aligned_cols=34 Identities=32% Similarity=0.327 Sum_probs=30.3
Q ss_pred CccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 007911 75 ELKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 75 ~l~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl~ 108 (585)
..++|.|+..+ ||+||+..|+..|.+.|+|||+.
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlli 92 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLL 92 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEE
Confidence 46789988665 79999999999999999999987
No 56
>COG2403 Predicted GTPase [General function prediction only]
Probab=89.01 E-value=2.1 Score=46.17 Aligned_cols=38 Identities=34% Similarity=0.566 Sum_probs=33.9
Q ss_pred CccEEEEecC---CCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 007911 75 ELKVIHVSGT---KGKGSTCTFCEAILRECGFRTGLFTSPH 112 (585)
Q Consensus 75 ~l~vIhVTGT---nGKgST~aml~sIL~~~G~kvGl~tSPh 112 (585)
..|+|.|+|| -|||++++++..+|++.||++....-|-
T Consensus 125 ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrhPm 165 (449)
T COG2403 125 EKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRHPM 165 (449)
T ss_pred cCceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEecCc
Confidence 3479999998 5999999999999999999998887776
No 57
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=88.73 E-value=0.45 Score=48.39 Aligned_cols=37 Identities=32% Similarity=0.424 Sum_probs=34.6
Q ss_pred EEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccc
Q 007911 78 VIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLI 114 (585)
Q Consensus 78 vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~ 114 (585)
+|+|+|.-||||+..-|..-|+..|++|.+-||-|+.
T Consensus 1 vi~~vG~gGKTtl~~~l~~~~~~~g~~v~~TTTT~m~ 37 (232)
T TIGR03172 1 VIAFVGAGGKTSTMFWLAAEYRKEGYRVLVTTTTRMF 37 (232)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHCCCeEEEECCcccc
Confidence 5899999999999999999999999999999999953
No 58
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=87.85 E-value=0.65 Score=44.62 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=32.6
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcCCc
Q 007911 76 LKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTSPH 112 (585)
Q Consensus 76 l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~tSPh 112 (585)
+++++|+|.+ ||||+..=+-..|++.|++++..-..|
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 5799999986 899999999999999999999887665
No 59
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=87.68 E-value=2.8 Score=39.39 Aligned_cols=58 Identities=22% Similarity=0.207 Sum_probs=38.1
Q ss_pred hhCCCcEEEEeecCCCCccccccccCCc-EEEEcCCCcccccccCCCHHHHHHHHhcccCCCCcEEeeC
Q 007911 169 VCEQVDVAIIEVGLGGEKDSTNVIKEPV-VCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVP 236 (585)
Q Consensus 169 ~~~~vd~aVlEvG~gGr~D~Tnvi~~P~-vavITNIg~DHld~lG~Tle~IA~~KagI~k~g~~aV~~~ 236 (585)
...+.|++++++ .|-..+...++...+ +-++|+-. -.+.|+--|..+|+..-.+++|.
T Consensus 88 ~~~~~D~iiIDt-aG~~~~~~~~~~~Ad~~ivv~tpe---------~~D~y~~~k~~~~~~~~~~~~~k 146 (148)
T cd03114 88 DAAGFDVIIVET-VGVGQSEVDIASMADTTVVVMAPG---------AGDDIQAIKAGIMEIADIVVVNK 146 (148)
T ss_pred HhcCCCEEEEEC-CccChhhhhHHHhCCEEEEEECCC---------chhHHHHhhhhHhhhcCEEEEeC
Confidence 345899999999 542233333443333 56667665 34689999999998776666664
No 60
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=87.65 E-value=1.1 Score=43.69 Aligned_cols=33 Identities=30% Similarity=0.528 Sum_probs=28.5
Q ss_pred CccEEEEecCC---CCchHHHHHHHHHHHCCCCeEE
Q 007911 75 ELKVIHVSGTK---GKGSTCTFCEAILRECGFRTGL 107 (585)
Q Consensus 75 ~l~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl 107 (585)
+.++|.|++++ ||||++..++..|...|++|-+
T Consensus 16 ~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVll 51 (204)
T TIGR01007 16 EIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLL 51 (204)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 37889998766 6999999999999999999855
No 61
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=87.45 E-value=1.1 Score=45.96 Aligned_cols=52 Identities=15% Similarity=0.077 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhCCCCcccCccEEEEe---cCCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 57 LQRMSMYLKILGLEDRIAELKVIHVS---GTKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 57 l~~~~~~L~~Lg~~~p~~~l~vIhVT---GTnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
.+.++.+...|.+.......++|.|| |--||||++..++..|.+.|+||.++
T Consensus 84 ~e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllI 138 (274)
T TIGR03029 84 VEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLI 138 (274)
T ss_pred HHHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 45667777777654334567899999 55689999999999999999999654
No 62
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=87.22 E-value=1.4 Score=43.36 Aligned_cols=37 Identities=22% Similarity=0.139 Sum_probs=30.1
Q ss_pred cccCccEEEEec---CCCCchHHHHHHHHHHH-CCCCeEEE
Q 007911 72 RIAELKVIHVSG---TKGKGSTCTFCEAILRE-CGFRTGLF 108 (585)
Q Consensus 72 p~~~l~vIhVTG---TnGKgST~aml~sIL~~-~G~kvGl~ 108 (585)
+....++|.|+| --||||++..|+..|.. .|+||-+.
T Consensus 31 ~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlv 71 (207)
T TIGR03018 31 RKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLI 71 (207)
T ss_pred cCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 445678999995 56899999999999986 69999664
No 63
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=86.67 E-value=4.3 Score=43.14 Aligned_cols=36 Identities=25% Similarity=0.171 Sum_probs=30.0
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 75 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 75 ~l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~tS 110 (585)
+..+|.+.|-| |||||++.|+..|+..|.+|.+.+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 34678787765 6999999999999999999987764
No 64
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=86.65 E-value=0.73 Score=45.48 Aligned_cols=31 Identities=29% Similarity=0.260 Sum_probs=26.0
Q ss_pred EEEEec--CCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 78 VIHVSG--TKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 78 vIhVTG--TnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
+|+|+| =-||||||.-|+..|.+.|+||.+.
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLli 34 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQV 34 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 577776 3479999999999999999999654
No 65
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=85.77 E-value=1.8 Score=44.94 Aligned_cols=37 Identities=24% Similarity=0.212 Sum_probs=30.7
Q ss_pred cCccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 74 AELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 74 ~~l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~tS 110 (585)
.+.++|.++|.+ |||||++-++..|...|++|++.+.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~ 108 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAG 108 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 345788888865 7999999999999999999988754
No 66
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=85.67 E-value=0.98 Score=37.30 Aligned_cols=31 Identities=32% Similarity=0.323 Sum_probs=26.6
Q ss_pred EEEecC--CCCchHHHHHHHHHHHCCCCeEEEc
Q 007911 79 IHVSGT--KGKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 79 IhVTGT--nGKgST~aml~sIL~~~G~kvGl~t 109 (585)
|.|+|. -||||++..+...|++.|+++.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 566666 4999999999999999999997765
No 67
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.04 E-value=2.5 Score=46.00 Aligned_cols=101 Identities=24% Similarity=0.316 Sum_probs=61.0
Q ss_pred ccEEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccC-C--
Q 007911 76 LKVIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTE-D-- 150 (585)
Q Consensus 76 l~vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~-~-- 150 (585)
-.||-..|- .||||||+-++..++..|+|+++..--- +| .. +| ++|+.+++. .
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDT-------FR-------ag----Af----DQLkqnA~k~~iP 158 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADT-------FR-------AG----AF----DQLKQNATKARVP 158 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecc-------cc-------cc----hH----HHHHHHhHhhCCe
Confidence 356666664 4799999999999999999998865322 11 11 22 445443321 0
Q ss_pred ----CCCCCHHHHHHHHHHHHhhhCCCcEEEEeecCCC---------CccccccccCCcEEEE
Q 007911 151 ----LPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGG---------EKDSTNVIKEPVVCGV 200 (585)
Q Consensus 151 ----~~~ps~Fe~lTllA~~~F~~~~vd~aVlEvG~gG---------r~D~Tnvi~~P~vavI 200 (585)
.....++.+ ..-+...|.++++|++|+.++-.+ -.|..|.+ +|+-.++
T Consensus 159 ~ygsyte~dpv~i-a~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai-~Pd~vi~ 219 (483)
T KOG0780|consen 159 FYGSYTEADPVKI-ASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAI-KPDEIIF 219 (483)
T ss_pred eEecccccchHHH-HHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhc-CCCeEEE
Confidence 011122222 334678899999999999884321 13455665 4655443
No 68
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=84.44 E-value=5.5 Score=39.58 Aligned_cols=95 Identities=22% Similarity=0.184 Sum_probs=52.8
Q ss_pred cCCCCchHHHHHHHHHHHCCCCeEEEcC-----------CccccccceEEECCEecCHHHHHHHHHHHHHhhhh------
Q 007911 83 GTKGKGSTCTFCEAILRECGFRTGLFTS-----------PHLIDVRERFRINGLDITEDKFLFYFWECWHLLRE------ 145 (585)
Q Consensus 83 GTnGKgST~aml~sIL~~~G~kvGl~tS-----------PhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~------ 145 (585)
|--||||++.-++..+.+.|++|.++.. |.|.++ . +..-.+.....+..++......
T Consensus 8 ~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~~~~~~~~L~~~---l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (217)
T cd02035 8 GGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDA---F---IVEDPEIAPNLYREEVDATRRVERAWGG 81 (217)
T ss_pred CCchHHHHHHHHHHHHHHCCCcEEEEECCCCcccccccCCCchhh---h---ccCChHHHHHHHHHHHHHHHHhhhcccc
Confidence 3459999999999999999999988754 121111 0 0000111122233333211100
Q ss_pred ----hccCCCCCCCHHHHHHHHHHHHhhhCC-CcEEEEeecCC
Q 007911 146 ----NVTEDLPMPPLFQFLTVLAFKIFVCEQ-VDVAIIEVGLG 183 (585)
Q Consensus 146 ----~~~~~~~~ps~Fe~lTllA~~~F~~~~-vd~aVlEvG~g 183 (585)
........|..-|++.+..+....+.. .|++|+-++-+
T Consensus 82 ~~~~~~~~~~~~p~~~ell~~~~l~~~l~~~~yD~IIiD~pp~ 124 (217)
T cd02035 82 EGGLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAPT 124 (217)
T ss_pred hhhhHHhHhccCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCc
Confidence 000112346677777765555555665 99999999754
No 69
>PRK14974 cell division protein FtsY; Provisional
Probab=84.37 E-value=2.6 Score=45.27 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=30.6
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 75 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 75 ~l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~tS 110 (585)
+..+|.++|-+ |||||++.++..|...|+++++.++
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 34689999976 6999999999999999999987654
No 70
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=84.30 E-value=2.4 Score=45.31 Aligned_cols=52 Identities=27% Similarity=0.351 Sum_probs=39.8
Q ss_pred HHHHHHHHHhCCC-CcccCccEEEE----ecCCCCchHHHHHHHHHHHCCCCeEEEc
Q 007911 58 QRMSMYLKILGLE-DRIAELKVIHV----SGTKGKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 58 ~~~~~~L~~Lg~~-~p~~~l~vIhV----TGTnGKgST~aml~sIL~~~G~kvGl~t 109 (585)
-..|+.+=+.|+- ...-..+||.| .|-.|||.++.+|...|++.|+++|+.+
T Consensus 30 ~~~R~~~y~~~~~~~~~~~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ils 86 (325)
T PRK00652 30 AALRRLLYRLGLKKPYRAPVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVS 86 (325)
T ss_pred HHHHHHHHHhCCCcccCCCCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEEC
Confidence 3455555566642 22235689988 8999999999999999999999998765
No 71
>PHA02518 ParA-like protein; Provisional
Probab=82.31 E-value=1.6 Score=42.39 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=25.3
Q ss_pred EEEEecC---CCCchHHHHHHHHHHHCCCCeEEE
Q 007911 78 VIHVSGT---KGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 78 vIhVTGT---nGKgST~aml~sIL~~~G~kvGl~ 108 (585)
+|.|++. -||||++..++..|...|++|.+.
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlli 35 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLV 35 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 5666654 569999999999999999998653
No 72
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=82.31 E-value=1.5 Score=43.74 Aligned_cols=32 Identities=25% Similarity=0.222 Sum_probs=27.1
Q ss_pred cEEEEecC---CCCchHHHHHHHHHHHCCCCeEEE
Q 007911 77 KVIHVSGT---KGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 77 ~vIhVTGT---nGKgST~aml~sIL~~~G~kvGl~ 108 (585)
++|.|++. -||||++.-++..|.+.|+||.+.
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~Vlli 36 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAI 36 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 57777765 489999999999999999999653
No 73
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=81.74 E-value=1.2 Score=43.93 Aligned_cols=34 Identities=29% Similarity=0.338 Sum_probs=25.1
Q ss_pred EEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcCC
Q 007911 78 VIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTSP 111 (585)
Q Consensus 78 vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~tSP 111 (585)
+|.+.|- .|||||++=|++.+...|.++++.+.-
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D 38 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISAD 38 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEES
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCC
Confidence 4444443 389999999999999889999997753
No 74
>PRK05439 pantothenate kinase; Provisional
Probab=81.31 E-value=21 Score=38.03 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=27.4
Q ss_pred CccEEEEecC--CCCchHHHHHHHHHHHC--CCCeEEEc
Q 007911 75 ELKVIHVSGT--KGKGSTCTFCEAILREC--GFRTGLFT 109 (585)
Q Consensus 75 ~l~vIhVTGT--nGKgST~aml~sIL~~~--G~kvGl~t 109 (585)
.--+|+|||. .||||+|..|..+|... |.++.+.+
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~ 123 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVT 123 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 3458999997 57999999999999864 56676543
No 75
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=81.27 E-value=3.3 Score=45.03 Aligned_cols=37 Identities=27% Similarity=0.287 Sum_probs=30.3
Q ss_pred cccCccEEEEecC---CCCchHHHHHHHHHHHCCCCeEEE
Q 007911 72 RIAELKVIHVSGT---KGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 72 p~~~l~vIhVTGT---nGKgST~aml~sIL~~~G~kvGl~ 108 (585)
+..+.++|.|+.. -||||||.-|+..|...|+||.+.
T Consensus 100 ~g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlI 139 (387)
T TIGR03453 100 GGEHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAI 139 (387)
T ss_pred CCCCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3456689998854 579999999999999999999653
No 76
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=81.07 E-value=1.8 Score=44.54 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=26.6
Q ss_pred cEEEEec--CCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 77 KVIHVSG--TKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 77 ~vIhVTG--TnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
++|+|+| =-||||||.-|+..|.+.|+||-++
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlI 35 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVV 35 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 5677775 3359999999999999999999765
No 77
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=80.38 E-value=1.9 Score=43.64 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=30.8
Q ss_pred ccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEEc
Q 007911 76 LKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 76 l~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl~t 109 (585)
++.|-||||. |||.+++.|.+.|++.|++++.|-
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~K 38 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYK 38 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEEC
Confidence 3678899997 999999999999999999998875
No 78
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=80.12 E-value=2 Score=40.06 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=27.1
Q ss_pred cEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcCCc
Q 007911 77 KVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTSPH 112 (585)
Q Consensus 77 ~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~tSPh 112 (585)
|+|+|.|-+ ||||.+..|-..|...|++++.+-.-|
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~ 38 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTD 38 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-S
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEcc
Confidence 578888864 899999999999999999999665433
No 79
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=79.73 E-value=2.5 Score=40.83 Aligned_cols=35 Identities=31% Similarity=0.521 Sum_probs=31.5
Q ss_pred EEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 007911 78 VIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTSPH 112 (585)
Q Consensus 78 vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~tSPh 112 (585)
-|+|||- -||||.+.-++..|+..|+++|=|-+|.
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~E 43 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPE 43 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeee
Confidence 5899996 6799999999999999999998887777
No 80
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=79.68 E-value=2.1 Score=42.92 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=27.4
Q ss_pred cEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 007911 77 KVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 77 ~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl~ 108 (585)
++|.|++++ ||||++.-++..|...|++|.++
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlli 36 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLI 36 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEE
Confidence 577787655 79999999999999999999765
No 81
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=79.23 E-value=7.4 Score=43.23 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=27.5
Q ss_pred EEEEecC---CCCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 78 VIHVSGT---KGKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 78 vIhVTGT---nGKgST~aml~sIL~~~G~kvGl~tS 110 (585)
.|-|||| .|||+++..|.+.|++.|++|..|.+
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~ 38 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKA 38 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEee
Confidence 4566666 59999999999999999999977753
No 82
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=77.84 E-value=16 Score=42.92 Aligned_cols=33 Identities=27% Similarity=0.324 Sum_probs=27.8
Q ss_pred EEEEecC---CCCchHHHHHHHHHHHCCCCeEEEcCC
Q 007911 78 VIHVSGT---KGKGSTCTFCEAILRECGFRTGLFTSP 111 (585)
Q Consensus 78 vIhVTGT---nGKgST~aml~sIL~~~G~kvGl~tSP 111 (585)
.|-|+|| .|||++|.-|...|++.|++||.|- |
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fK-P 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFK-P 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeC-C
Confidence 3445544 6899999999999999999999987 5
No 83
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=77.74 E-value=2.6 Score=42.76 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=32.0
Q ss_pred ccEEEEec--CCCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 007911 76 LKVIHVSG--TKGKGSTCTFCEAILRECGFRTGLFTSPH 112 (585)
Q Consensus 76 l~vIhVTG--TnGKgST~aml~sIL~~~G~kvGl~tSPh 112 (585)
+++|.|+| -.||||++.-|...|+..|++|+.+...|
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~~~ 39 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKHTH 39 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 46899999 66899999999999999999999987555
No 84
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=77.52 E-value=5.1 Score=42.23 Aligned_cols=51 Identities=22% Similarity=0.138 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhCCCCcccCccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 007911 57 LQRMSMYLKILGLEDRIAELKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 57 l~~~~~~L~~Lg~~~p~~~l~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl~ 108 (585)
-..+.+.+.++.- .+..+.++|.|+|.| ||||++.-|+..|...|++|.+.
T Consensus 75 ~~~l~~~l~~~~~-~~~~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLv 128 (322)
T TIGR03815 75 EGWLVELLADLDQ-SPPARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLV 128 (322)
T ss_pred HHHHHHHHHhhcc-CCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEE
Confidence 3455666666642 344567899998876 69999999999999999998664
No 85
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=75.76 E-value=2.9 Score=42.87 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=25.9
Q ss_pred EEEEec--CCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 78 VIHVSG--TKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 78 vIhVTG--TnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
+|+|.| =.||||+|.-|+..|.+.|+||.++
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~Vlli 34 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIV 34 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 466665 4579999999999999999999764
No 86
>PRK06761 hypothetical protein; Provisional
Probab=75.60 E-value=28 Score=36.46 Aligned_cols=59 Identities=22% Similarity=0.257 Sum_probs=39.1
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHH
Q 007911 77 KVIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFW 137 (585)
Q Consensus 77 ~vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~ 137 (585)
++|.|+|- .||||++..+..-|...|+++..+.-+-.....|- ..+..++.++|.....
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~--~~~~~~~~eer~~~l~ 64 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADY--DGVACFTKEEFDRLLS 64 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhh--ccccCCCHHHHHHHHH
Confidence 57888884 58999999999999988988877654322111121 1345567777765543
No 87
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=75.10 E-value=17 Score=38.25 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=22.5
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHC
Q 007911 76 LKVIHVSGTK--GKGSTCTFCEAILREC 101 (585)
Q Consensus 76 l~vIhVTGTn--GKgST~aml~sIL~~~ 101 (585)
--+|+|+|.| ||||++.+|..+|...
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~ 89 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRW 89 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 3599999987 6999999999999854
No 88
>PRK15453 phosphoribulokinase; Provisional
Probab=74.94 E-value=3.6 Score=43.17 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=26.9
Q ss_pred cCccEEEEecCC--CCchHHHHHHHHHHHCCCCeE
Q 007911 74 AELKVIHVSGTK--GKGSTCTFCEAILRECGFRTG 106 (585)
Q Consensus 74 ~~l~vIhVTGTn--GKgST~aml~sIL~~~G~kvG 106 (585)
.+-++|+|||+. ||||+|..++.+|+..+.++.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~ 37 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAA 37 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeE
Confidence 345899999985 799999999999988776543
No 89
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=74.61 E-value=3.8 Score=41.47 Aligned_cols=32 Identities=31% Similarity=0.310 Sum_probs=27.6
Q ss_pred cEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 007911 77 KVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 77 ~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl~ 108 (585)
++|.|++.| |||||+..|+..|...|++|.+.
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~Vlli 36 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALF 36 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 578887766 69999999999999999999664
No 90
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=74.41 E-value=3.5 Score=42.29 Aligned_cols=32 Identities=28% Similarity=0.290 Sum_probs=27.1
Q ss_pred cEEEEec--CCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 77 KVIHVSG--TKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 77 ~vIhVTG--TnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
++|+|+| =-|||||+.-|+..|.+.|+||.++
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllv 35 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLV 35 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEE
Confidence 5777774 3479999999999999999999775
No 91
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=73.52 E-value=4 Score=40.69 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=25.6
Q ss_pred EEEEe---cCCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 78 VIHVS---GTKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 78 vIhVT---GTnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
+|.|+ |--||||++.-++..|.+.|++|.++
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~Vlli 35 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLAL 35 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 55555 45679999999999999999999765
No 92
>CHL00175 minD septum-site determining protein; Validated
Probab=73.39 E-value=3.8 Score=42.09 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=28.9
Q ss_pred ccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 007911 76 LKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 76 l~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl~ 108 (585)
.++|.|++++ ||||++.-++..|.+.|++|.++
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlli 50 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALI 50 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 3689998876 79999999999999999999765
No 93
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=73.10 E-value=3.6 Score=40.03 Aligned_cols=32 Identities=31% Similarity=0.472 Sum_probs=28.5
Q ss_pred EEEEecC---CCCchHHHHHHHHHHHCCCCeEEEc
Q 007911 78 VIHVSGT---KGKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 78 vIhVTGT---nGKgST~aml~sIL~~~G~kvGl~t 109 (585)
.|-|+|| -|||++|.-|.+.|++.|.++|.|-
T Consensus 2 ~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~K 36 (199)
T PF13500_consen 2 TIFITGTDTGVGKTVVSLGLARALRRRGIKVGYFK 36 (199)
T ss_dssp EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 5678888 4999999999999999999999874
No 94
>PRK10037 cell division protein; Provisional
Probab=72.63 E-value=4.3 Score=41.12 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=26.6
Q ss_pred cEEEEecCC---CCchHHHHHHHHHHHCCCCeEE
Q 007911 77 KVIHVSGTK---GKGSTCTFCEAILRECGFRTGL 107 (585)
Q Consensus 77 ~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl 107 (585)
++|+|+..| ||||||.-|+..|.+.|+||-+
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLl 35 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLV 35 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEE
Confidence 577777665 6999999999999999999955
No 95
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=72.61 E-value=8.3 Score=41.26 Aligned_cols=52 Identities=25% Similarity=0.349 Sum_probs=38.7
Q ss_pred hHHHHHHHHHhCCCCcccCccEEEE----ecCCCCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 57 LQRMSMYLKILGLEDRIAELKVIHV----SGTKGKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 57 l~~~~~~L~~Lg~~~p~~~l~vIhV----TGTnGKgST~aml~sIL~~~G~kvGl~tS 110 (585)
+...++.+.+.| ...-..+||.| .|-+|||-++-.|..-|++.|+++|.++=
T Consensus 30 i~~~r~~~~~~g--~~~~pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSR 85 (336)
T COG1663 30 IAGLRRKLAKKG--SYRAPVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSR 85 (336)
T ss_pred HHHHHHHHhccc--cccCCCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEec
Confidence 344455555555 12234678764 79999999999999999999999998763
No 96
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=71.89 E-value=4.6 Score=44.86 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=32.7
Q ss_pred ccEEEEec--CCCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 007911 76 LKVIHVSG--TKGKGSTCTFCEAILRECGFRTGLFTSPH 112 (585)
Q Consensus 76 l~vIhVTG--TnGKgST~aml~sIL~~~G~kvGl~tSPh 112 (585)
+++|+|+| -.||||.+.-|-..|+..|++|+++-..|
T Consensus 1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH~h 39 (452)
T PRK14495 1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKHSH 39 (452)
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 46899999 66999999999999999999999987655
No 97
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=71.61 E-value=9.5 Score=40.49 Aligned_cols=51 Identities=27% Similarity=0.529 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCC-CcccCccEEEE----ecCCCCchHHHHHHHHHHHCCCCeEEEc
Q 007911 59 RMSMYLKILGLE-DRIAELKVIHV----SGTKGKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 59 ~~~~~L~~Lg~~-~p~~~l~vIhV----TGTnGKgST~aml~sIL~~~G~kvGl~t 109 (585)
.++.++-+.|.- .-....+||.| .|=.|||-++.+|...|++.|+++|..+
T Consensus 10 ~lr~~~y~~~~~~~~~~~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlS 65 (311)
T TIGR00682 10 NVRRFLYDLGLKKAKRAPVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLS 65 (311)
T ss_pred HHHHHHHHcCccccccCCCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEEC
Confidence 345555555532 12235678887 4888999999999999999999998765
No 98
>PRK07667 uridine kinase; Provisional
Probab=71.32 E-value=8.5 Score=37.51 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=30.7
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 007911 77 KVIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTSPH 112 (585)
Q Consensus 77 ~vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~tSPh 112 (585)
.+|+|+|- .||||+|..|...|...|.++.++....
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 79999995 6899999999999999999887765543
No 99
>PRK11670 antiporter inner membrane protein; Provisional
Probab=71.12 E-value=4.6 Score=43.82 Aligned_cols=33 Identities=33% Similarity=0.412 Sum_probs=28.9
Q ss_pred ccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 007911 76 LKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 76 l~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl~ 108 (585)
.++|.|+..| |||||+.-|+..|.+.|+||++.
T Consensus 107 ~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLI 142 (369)
T PRK11670 107 KNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGIL 142 (369)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4789998655 79999999999999999999874
No 100
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=70.91 E-value=5.4 Score=38.05 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=29.7
Q ss_pred ccEEEEec--CCCCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 76 LKVIHVSG--TKGKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 76 l~vIhVTG--TnGKgST~aml~sIL~~~G~kvGl~tS 110 (585)
+++|+|.| -.||||.+..+...|...|+++|.+..
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~ 37 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKH 37 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 36899999 568999999999999999999988753
No 101
>PRK10818 cell division inhibitor MinD; Provisional
Probab=70.76 E-value=4.6 Score=41.12 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=26.4
Q ss_pred cEEEEecCC---CCchHHHHHHHHHHHCCCCeEE
Q 007911 77 KVIHVSGTK---GKGSTCTFCEAILRECGFRTGL 107 (585)
Q Consensus 77 ~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl 107 (585)
++|.|++.+ ||||++..++..|.+.|++|.+
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vll 36 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVV 36 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 577777655 7999999999999999999855
No 102
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=70.49 E-value=4.8 Score=41.23 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=25.9
Q ss_pred cEEEEec--CCCCchHHHHHHHHHHH-CCCCeEEE
Q 007911 77 KVIHVSG--TKGKGSTCTFCEAILRE-CGFRTGLF 108 (585)
Q Consensus 77 ~vIhVTG--TnGKgST~aml~sIL~~-~G~kvGl~ 108 (585)
++|.|+| =-||||||.-|+..|.+ .|+||.++
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLli 37 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIH 37 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEe
Confidence 5677773 34599999999999997 69999765
No 103
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=70.27 E-value=15 Score=40.69 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=23.8
Q ss_pred EEEEecC---CCCchHHHHHHHHHHHCCCCeE
Q 007911 78 VIHVSGT---KGKGSTCTFCEAILRECGFRTG 106 (585)
Q Consensus 78 vIhVTGT---nGKgST~aml~sIL~~~G~kvG 106 (585)
-|-|+|| .||||++.-|-..|+..|++|-
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vq 33 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQ 33 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCccc
Confidence 3567776 4999999999999999987663
No 104
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=70.06 E-value=5.3 Score=40.12 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=27.6
Q ss_pred EEEEecC---CCCchHHHHHHHHHHHCCCCeEEEc
Q 007911 78 VIHVSGT---KGKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 78 vIhVTGT---nGKgST~aml~sIL~~~G~kvGl~t 109 (585)
.|-|||| -|||+++..|...|++.|+++|.|-
T Consensus 4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~K 38 (231)
T PRK12374 4 RFFITGTDTSVGKTVVSRALLQALASQGKTVAGYK 38 (231)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 3556665 6999999999999999999999884
No 105
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=69.83 E-value=11 Score=40.60 Aligned_cols=52 Identities=23% Similarity=0.280 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCC-CcccCccEEEE----ecCCCCchHHHHHHHHHHHCCCCeEEEc
Q 007911 58 QRMSMYLKILGLE-DRIAELKVIHV----SGTKGKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 58 ~~~~~~L~~Lg~~-~p~~~l~vIhV----TGTnGKgST~aml~sIL~~~G~kvGl~t 109 (585)
-.+|+.+-+.|.- ...-..+||.| .|-.|||-++.+|...|++.|+++|+.+
T Consensus 37 ~~lR~~~y~~g~~~~~~~pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlS 93 (338)
T PRK01906 37 AALRRAAYARGWKKSVRLGVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVS 93 (338)
T ss_pred HHHHHHHHhhcccccccCCCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEe
Confidence 3455555555532 12235678876 6889999999999999999999998765
No 106
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=69.83 E-value=3.7 Score=41.67 Aligned_cols=31 Identities=29% Similarity=0.332 Sum_probs=25.5
Q ss_pred EEEE--ecCCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 78 VIHV--SGTKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 78 vIhV--TGTnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
+|.| -|--||||+|.-|+..|...|+||.+.
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlli 35 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIV 35 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 4444 466689999999999999999999653
No 107
>PRK00784 cobyric acid synthase; Provisional
Probab=69.61 E-value=4.3 Score=45.64 Aligned_cols=34 Identities=32% Similarity=0.454 Sum_probs=29.9
Q ss_pred cEEEEecC---CCCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 77 KVIHVSGT---KGKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 77 ~vIhVTGT---nGKgST~aml~sIL~~~G~kvGl~tS 110 (585)
+.|-|||| -|||+++..|...|++.|++|+.|-.
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 45788888 79999999999999999999988763
No 108
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=69.33 E-value=12 Score=41.50 Aligned_cols=100 Identities=16% Similarity=0.099 Sum_probs=55.4
Q ss_pred cccccchhhhccCCCcCcHHHHHHHHHhhhhhhhcCCCccccccC-C-ChHHHHHHHH-HhCCC-C---cc-cCccEEEE
Q 007911 10 VSNALTTEYEENLPLSSSYENAMQALSSLITRQKRGEQSHIAGRY-G-KLQRMSMYLK-ILGLE-D---RI-AELKVIHV 81 (585)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~y~~a~~~L~~l~~~~~~~~~~~~~~~~-~-~l~~~~~~L~-~Lg~~-~---p~-~~l~vIhV 81 (585)
+..++...+.+.+...-+|.-+.+.++.+...- .+......... . -..-+.+.|. .|+-. . +. .+..+|.+
T Consensus 27 i~~~l~ei~~aLleaDV~~~vv~~~~~~v~~~~-~~~~~~~~~~~~~~v~~~v~~~L~~~l~~~~~~~~~~~~~~~vi~l 105 (429)
T TIGR01425 27 LNAMLKEICTALLESDVNIKLVRQLRENIKKAI-NLEEMASGLNKRKMIQHAVFKELCNLVDPGVEAFTPKKGKQNVIMF 105 (429)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-hccccccccCHHHHHHHHHHHHHHHHhCCCCccccccCCCCeEEEE
Confidence 344444455566666677777777776665421 11110000000 0 1122233333 35521 1 11 22468888
Q ss_pred ecC--CCCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 82 SGT--KGKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 82 TGT--nGKgST~aml~sIL~~~G~kvGl~tS 110 (585)
+|- .|||||++-|+..|+..|++|++.+.
T Consensus 106 vG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 106 VGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA 136 (429)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 885 47999999999999999999988764
No 109
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=69.23 E-value=18 Score=40.04 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=28.5
Q ss_pred cEEEEec--CCCCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 77 KVIHVSG--TKGKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 77 ~vIhVTG--TnGKgST~aml~sIL~~~G~kvGl~tS 110 (585)
.+|-..| -.||||||+=|+.-|+..|+|+++...
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaa 136 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAA 136 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEec
Confidence 4566666 369999999999999999999988764
No 110
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=68.95 E-value=7.1 Score=39.37 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=35.0
Q ss_pred cCccEEEEec--CCCCchHHHHHHHHHHHCCCCeEE------EcCCccccccceEEECCE
Q 007911 74 AELKVIHVSG--TKGKGSTCTFCEAILRECGFRTGL------FTSPHLIDVRERFRINGL 125 (585)
Q Consensus 74 ~~l~vIhVTG--TnGKgST~aml~sIL~~~G~kvGl------~tSPhL~~~rERI~inG~ 125 (585)
.+.-+|+|+| -.||||+|..|...|... ++++ |-+..-..+.||..+|..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YYk~~~~~~~~~~~~~n~d 63 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYKDQSHLPFEERNKINYD 63 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEeeccccccchhhcCHhhcCCcCcc
Confidence 5567999999 578999999999999854 3433 445555555566666643
No 111
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=68.76 E-value=4.4 Score=39.37 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=24.4
Q ss_pred EEEEec--CCCCchHHHHHHHHHHHCCCC
Q 007911 78 VIHVSG--TKGKGSTCTFCEAILRECGFR 104 (585)
Q Consensus 78 vIhVTG--TnGKgST~aml~sIL~~~G~k 104 (585)
+|+|+| ..||||++..|..+|.+.|.+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence 688998 679999999999999998876
No 112
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=68.68 E-value=6 Score=42.30 Aligned_cols=34 Identities=26% Similarity=0.219 Sum_probs=29.1
Q ss_pred cCccEEEEecCC--CCchHHHHHHHHHHHCCCCeEE
Q 007911 74 AELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGL 107 (585)
Q Consensus 74 ~~l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl 107 (585)
++..+|-+.|.| |||||.+=|++.|.+.|++|-+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vll 172 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLL 172 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEE
Confidence 346788888888 5999999999999999999854
No 113
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=68.67 E-value=8.6 Score=45.45 Aligned_cols=35 Identities=14% Similarity=0.293 Sum_probs=30.7
Q ss_pred cCccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 007911 74 AELKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 74 ~~l~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl~ 108 (585)
...++|.||++. ||||++.-|+..|...|+||-+.
T Consensus 529 ~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlI 566 (726)
T PRK09841 529 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 566 (726)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 456899999987 99999999999999999998553
No 114
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=68.03 E-value=6.8 Score=39.79 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=27.6
Q ss_pred cEEEEe---cCCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 77 KVIHVS---GTKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 77 ~vIhVT---GTnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
++|.|| |--|||||++-|...|...|+||.+.
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~li 37 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLI 37 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEE
Confidence 577787 56689999999999999999998765
No 115
>PRK11519 tyrosine kinase; Provisional
Probab=67.98 E-value=9.5 Score=45.06 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCCCcccCccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 007911 58 QRMSMYLKILGLEDRIAELKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 58 ~~~~~~L~~Lg~~~p~~~l~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl~ 108 (585)
+.+|.+-..|.+..+....++|.||++. ||||++.-++..|...|.||-+.
T Consensus 508 Ea~r~lrt~l~~~~~~~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlI 561 (719)
T PRK11519 508 EAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLI 561 (719)
T ss_pred HHHHHHHHHhhhhccCCCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 3444444444332233456899999954 89999999999999999999654
No 116
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=67.75 E-value=14 Score=39.45 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=40.8
Q ss_pred HHHHHHHHHhCCC-CcccCccEEEE----ecCCCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 007911 58 QRMSMYLKILGLE-DRIAELKVIHV----SGTKGKGSTCTFCEAILRECGFRTGLFTSPH 112 (585)
Q Consensus 58 ~~~~~~L~~Lg~~-~p~~~l~vIhV----TGTnGKgST~aml~sIL~~~G~kvGl~tSPh 112 (585)
-.+|..+-+.|+- ...-..+||.| +|-.|||-++.+|...|++.|+++++.+=.+
T Consensus 16 ~~~R~~~y~~g~~~~~~~~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGY 75 (326)
T PF02606_consen 16 VSLRNFLYDRGLLKSYRLPVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGY 75 (326)
T ss_pred HHHHHHHHhcCCcccCCCCCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCC
Confidence 3455566555532 23345678876 6889999999999999999999999876443
No 117
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=65.77 E-value=7.1 Score=40.65 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=30.1
Q ss_pred ccEEEEec--CCCCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 76 LKVIHVSG--TKGKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 76 l~vIhVTG--TnGKgST~aml~sIL~~~G~kvGl~tS 110 (585)
+++|+|+| -.||||.+.-|...|++.| +|+++-.
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKh 36 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKH 36 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEE
Confidence 36899999 7799999999999999999 8988765
No 118
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=65.73 E-value=6 Score=37.61 Aligned_cols=32 Identities=22% Similarity=0.168 Sum_probs=25.2
Q ss_pred EEEEecCCCCchHHHHHHHHHHHCCCCeEEEc
Q 007911 78 VIHVSGTKGKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 78 vIhVTGTnGKgST~aml~sIL~~~G~kvGl~t 109 (585)
+.+.-|=-||||++..|+..|...|++|.++-
T Consensus 3 v~~~kGG~GKTt~a~~la~~la~~g~~VlliD 34 (195)
T PF01656_consen 3 VTSGKGGVGKTTIAANLAQALARKGKKVLLID 34 (195)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEcCCCCccHHHHHHHHHhccccccccccccc
Confidence 34445666899999999999999999997753
No 119
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=65.48 E-value=6.3 Score=36.92 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=25.3
Q ss_pred EEEecCCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 79 IHVSGTKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 79 IhVTGTnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
..-.|--||||++..++..|...|++|.+.
T Consensus 5 ~~~kgG~GKtt~a~~la~~l~~~g~~vllv 34 (179)
T cd02036 5 TSGKGGVGKTTTTANLGTALAQLGYKVVLI 34 (179)
T ss_pred eeCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 334566789999999999999999999775
No 120
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=65.47 E-value=6.8 Score=38.74 Aligned_cols=31 Identities=29% Similarity=0.470 Sum_probs=26.2
Q ss_pred EEEecC---CCCchHHHHHHHHHHHCCCCeEEEc
Q 007911 79 IHVSGT---KGKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 79 IhVTGT---nGKgST~aml~sIL~~~G~kvGl~t 109 (585)
|-|||| -|||+++..|.+.|++.|++++.|-
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 344554 6999999999999999999998875
No 121
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=65.13 E-value=5.4 Score=38.88 Aligned_cols=24 Identities=33% Similarity=0.796 Sum_probs=18.7
Q ss_pred EEEEecCC--CCchHHHHHHHHHHHCCCCe
Q 007911 78 VIHVSGTK--GKGSTCTFCEAILRECGFRT 105 (585)
Q Consensus 78 vIhVTGTn--GKgST~aml~sIL~~~G~kv 105 (585)
.|.||||= ||||+|..|+ ..|+++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~----~lg~~~ 27 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR----ELGYKV 27 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH----HhCCce
Confidence 69999995 6888888766 557775
No 122
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=64.87 E-value=7.9 Score=35.62 Aligned_cols=32 Identities=31% Similarity=0.212 Sum_probs=25.4
Q ss_pred cEEEEec---CCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 77 KVIHVSG---TKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 77 ~vIhVTG---TnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
|+|+|.| --|||+++.-++..|.+.|.+|.++
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vlli 35 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLI 35 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 4667766 5589999999999999999987654
No 123
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=63.70 E-value=7.5 Score=36.80 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=27.4
Q ss_pred EEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 78 VIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 78 vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~tS 110 (585)
+|.|+|. .||||++..+...|+..|++++.+-.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~ 35 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKH 35 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 4677774 47999999999999999999998764
No 124
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=63.59 E-value=15 Score=39.81 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=41.2
Q ss_pred CChHHHHHHHHHhCCCCcccCccEEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 007911 55 GKLQRMSMYLKILGLEDRIAELKVIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTSPH 112 (585)
Q Consensus 55 ~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~tSPh 112 (585)
++-++.+++.++... .+..+.++|+|+|. .||||.+.-+-..|+..|+++|.....|
T Consensus 185 NTpeDl~~l~~~~~~-~~~~~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~ 243 (366)
T PRK14489 185 NTPEDLEQLRAIPDG-TTTGAPPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSH 243 (366)
T ss_pred CCHHHHHHHhhhhhc-ccCCCccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECC
Confidence 445556555544321 23446789999994 5899999999999999999999877444
No 125
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=63.50 E-value=7.2 Score=39.08 Aligned_cols=29 Identities=24% Similarity=0.364 Sum_probs=22.7
Q ss_pred EEEEecCC--CCchHHHHHHHHHHH--CCCCeE
Q 007911 78 VIHVSGTK--GKGSTCTFCEAILRE--CGFRTG 106 (585)
Q Consensus 78 vIhVTGTn--GKgST~aml~sIL~~--~G~kvG 106 (585)
+|+|+|.+ ||||++..|..+|+. .+.++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~ 33 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVE 33 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEE
Confidence 58899976 699999999999986 344444
No 126
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=62.74 E-value=14 Score=38.55 Aligned_cols=36 Identities=28% Similarity=0.253 Sum_probs=28.5
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHC-C-CCeEEEcC
Q 007911 75 ELKVIHVSGTK--GKGSTCTFCEAILREC-G-FRTGLFTS 110 (585)
Q Consensus 75 ~l~vIhVTGTn--GKgST~aml~sIL~~~-G-~kvGl~tS 110 (585)
+-.+|.+.|-+ |||||++.|+.-+... | ++|++++.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~ 232 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITT 232 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 34588888855 7999999999988765 5 89998875
No 127
>PLN02796 D-glycerate 3-kinase
Probab=62.62 E-value=11 Score=40.62 Aligned_cols=43 Identities=21% Similarity=0.270 Sum_probs=34.0
Q ss_pred cEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHH
Q 007911 77 KVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDK 131 (585)
Q Consensus 77 ~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~ 131 (585)
-+|+|+|.+ ||||++..|..+|...|.++|. |.+||..++.++
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~------------IsiDdfYLt~~e 145 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVYLFNATGRRAAS------------LSIDDFYLTAAD 145 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhcccCCceeE------------EEECCcccchhh
Confidence 579999975 7999999999999887777765 556777766554
No 128
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=62.18 E-value=22 Score=39.63 Aligned_cols=98 Identities=16% Similarity=0.193 Sum_probs=53.1
Q ss_pred ccchhhhccCCCcCcHHHHHHHHHhhhhhhhcCCCccccccC--CChHHH-HHHHHHhCCC-Ccc---cCccEEEEecC-
Q 007911 13 ALTTEYEENLPLSSSYENAMQALSSLITRQKRGEQSHIAGRY--GKLQRM-SMYLKILGLE-DRI---AELKVIHVSGT- 84 (585)
Q Consensus 13 ~~~~~~~~~~~~~~~y~~a~~~L~~l~~~~~~~~~~~~~~~~--~~l~~~-~~~L~~Lg~~-~p~---~~l~vIhVTGT- 84 (585)
++...+.+.+....+|+-+-+.++.+...- .+......... .-+..+ .++.+.++-. .+. .+..+|.++|-
T Consensus 26 ~l~ei~~aLl~adV~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~v~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~ 104 (437)
T PRK00771 26 VVKDIQRALLQADVNVKLVKELSKSIKERA-LEEEPPKGLTPREHVIKIVYEELVKLLGEETEPLVLPLKPQTIMLVGLQ 104 (437)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-hcccccccCCcHHHHHHHHHHHHHHHhCCCccccccCCCCeEEEEECCC
Confidence 344445555556666666666666554321 11100000000 012222 2344555532 111 23457777774
Q ss_pred -CCCchHHHHHHHHHHHCCCCeEEEcCC
Q 007911 85 -KGKGSTCTFCEAILRECGFRTGLFTSP 111 (585)
Q Consensus 85 -nGKgST~aml~sIL~~~G~kvGl~tSP 111 (585)
.|||||++-++..|...|++|++.+..
T Consensus 105 GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 105 GSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 489999999999999999999887643
No 129
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=61.68 E-value=11 Score=40.40 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=31.2
Q ss_pred cccCccEEEEec--CCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 72 RIAELKVIHVSG--TKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 72 p~~~l~vIhVTG--TnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
+.++.++|.|+| .-||||++..++..|.+.|++|++.
T Consensus 27 ~~~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVlli 65 (329)
T cd02033 27 PTKKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLI 65 (329)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 335678888886 5689999999999999999999876
No 130
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=60.65 E-value=10 Score=39.52 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=30.9
Q ss_pred HHHHHHhCCCC--cccCccEEEEecCCCCchHHHHHHHHHHHCCCC
Q 007911 61 SMYLKILGLED--RIAELKVIHVSGTKGKGSTCTFCEAILRECGFR 104 (585)
Q Consensus 61 ~~~L~~Lg~~~--p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~k 104 (585)
.+...++|... |...+-+.|=+|| |||+++..++..|...|+.
T Consensus 44 ~~~r~~~g~~~~~~~~~vll~G~pGT-GKT~lA~~ia~~l~~~g~~ 88 (284)
T TIGR02880 44 ERLRQRLGLASAAPTLHMSFTGNPGT-GKTTVALRMAQILHRLGYV 88 (284)
T ss_pred HHHHHHhCCCcCCCCceEEEEcCCCC-CHHHHHHHHHHHHHHcCCc
Confidence 44455667542 3233446788999 9999999999999988764
No 131
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=59.51 E-value=11 Score=39.31 Aligned_cols=34 Identities=29% Similarity=0.296 Sum_probs=27.9
Q ss_pred CccEEEEe--cCCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 75 ELKVIHVS--GTKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 75 ~l~vIhVT--GTnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
++++|.|. |--|||||+.-|+..|.+.|+||.++
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLli 38 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIV 38 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 45677776 34569999999999999999999775
No 132
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=58.89 E-value=20 Score=40.45 Aligned_cols=34 Identities=26% Similarity=0.241 Sum_probs=26.6
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHH-HCC-CCeEEEc
Q 007911 76 LKVIHVSGTK--GKGSTCTFCEAILR-ECG-FRTGLFT 109 (585)
Q Consensus 76 l~vIhVTGTn--GKgST~aml~sIL~-~~G-~kvGl~t 109 (585)
-.+|++.|-| |||||+..|+..+. ..| .+|++.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~ 293 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLT 293 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 4688888877 69999999999884 455 4788765
No 133
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=58.44 E-value=8.4 Score=39.25 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=25.2
Q ss_pred EEEEec--CCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 78 VIHVSG--TKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 78 vIhVTG--TnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
+|.|+| =-||||||.-|+..|...|+||.+.
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlli 34 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQI 34 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 355555 4579999999999999999999653
No 134
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=58.34 E-value=19 Score=39.78 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=28.8
Q ss_pred cEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 77 KVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 77 ~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~tS 110 (585)
++|++.|-+ |||||++-|+.-|...|+++++++.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 577777754 7999999999999999999998765
No 135
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=57.93 E-value=8.4 Score=43.25 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=24.9
Q ss_pred CCCchHHHHHHHHHHHCCCCeEEEcCC
Q 007911 85 KGKGSTCTFCEAILRECGFRTGLFTSP 111 (585)
Q Consensus 85 nGKgST~aml~sIL~~~G~kvGl~tSP 111 (585)
-|||.+|+.|..+|++.|++|+.|..-
T Consensus 10 vGKT~v~~~L~~~l~~~G~~v~~fKp~ 36 (475)
T TIGR00313 10 AGKSTLTAGLCRILARRGYRVAPFKSQ 36 (475)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 799999999999999999999988753
No 136
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=57.92 E-value=8.4 Score=39.24 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=23.3
Q ss_pred ecCCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 82 SGTKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 82 TGTnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
-|=-||||||.-|+..|...|+||-++
T Consensus 8 KGGVGKTT~~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 456689999999999999999998654
No 137
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=57.17 E-value=18 Score=42.87 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=29.1
Q ss_pred cCccEEEEecCC---CCchHHHHHHHHHHHCCCCeEE
Q 007911 74 AELKVIHVSGTK---GKGSTCTFCEAILRECGFRTGL 107 (585)
Q Consensus 74 ~~l~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl 107 (585)
...++|.||+++ |||||+.-++..|...|+||-+
T Consensus 544 ~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLl 580 (754)
T TIGR01005 544 AEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALL 580 (754)
T ss_pred CCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEE
Confidence 455789988765 7999999999999999999855
No 138
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=56.72 E-value=9.4 Score=36.60 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=20.1
Q ss_pred cCccEEEEecC--CCCchHHHHHHHHH
Q 007911 74 AELKVIHVSGT--KGKGSTCTFCEAIL 98 (585)
Q Consensus 74 ~~l~vIhVTGT--nGKgST~aml~sIL 98 (585)
...|-|-|||| -||||+|..|+..+
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHh
Confidence 45577999999 57999999988654
No 139
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=56.21 E-value=13 Score=35.96 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=26.4
Q ss_pred EEEEecC--CCCchHHHHHHHHHHHCCCCeEEEc
Q 007911 78 VIHVSGT--KGKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 78 vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~t 109 (585)
+|+|+|. .||||.|..|...|...|.++..+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~ 34 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVIS 34 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 4788885 5899999999999998888876543
No 140
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=56.15 E-value=11 Score=38.61 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=23.4
Q ss_pred EEEEecCCCCchHHHHHHHHHHHCCCCe
Q 007911 78 VIHVSGTKGKGSTCTFCEAILRECGFRT 105 (585)
Q Consensus 78 vIhVTGTnGKgST~aml~sIL~~~G~kv 105 (585)
++++.|=-||||+++-|+..|...|.+|
T Consensus 6 i~s~kGGvG~TTltAnLA~aL~~~G~~V 33 (243)
T PF06564_consen 6 IVSPKGGVGKTTLTANLAWALARLGESV 33 (243)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHCCCcE
Confidence 3444555689999999999999999998
No 141
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=56.10 E-value=14 Score=35.94 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=29.8
Q ss_pred CccEEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 75 ELKVIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 75 ~l~vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~tS 110 (585)
+.++|+|+|- .||||...-|-..|...|+++|.+.-
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~ 42 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 5579999994 57888888888889999999998763
No 142
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=55.26 E-value=10 Score=34.75 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=24.6
Q ss_pred EecC-CCCchHHHHHHHHHHHCCCCeEEEc
Q 007911 81 VSGT-KGKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 81 VTGT-nGKgST~aml~sIL~~~G~kvGl~t 109 (585)
|||| -|||+++.-+...|++.|++++.|-
T Consensus 5 ~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~k 34 (134)
T cd03109 5 GTGTDIGKTVATAILARALKEKGYRVAPLK 34 (134)
T ss_pred eCCCCcCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3443 6999999999999999999999874
No 143
>PRK13236 nitrogenase reductase; Reviewed
Probab=54.96 E-value=11 Score=39.54 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=29.0
Q ss_pred cCccEEEEec--CCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 74 AELKVIHVSG--TKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 74 ~~l~vIhVTG--TnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
.++++|.|-| =-|||||+.-|+..|.+.|+||.++
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLli 40 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIV 40 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 3457777755 4479999999999999999999886
No 144
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=54.52 E-value=13 Score=38.82 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=26.2
Q ss_pred EEEEecC--CCCchHHHHHHHHHHHCCCCeEEE
Q 007911 78 VIHVSGT--KGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 78 vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~ 108 (585)
+|+|||. .||||++.-+..+|+..|.++.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI 33 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVV 33 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 5899997 479999999999999988877554
No 145
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=54.36 E-value=60 Score=33.09 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=24.0
Q ss_pred cCCCCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 83 GTKGKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 83 GTnGKgST~aml~sIL~~~G~kvGl~tS 110 (585)
|--||||+++-++..+.+.|+||-+...
T Consensus 9 gG~GKtt~a~~la~~~a~~g~~vLlvd~ 36 (254)
T cd00550 9 GGVGKTTISAATAVRLAEQGKKVLLVST 36 (254)
T ss_pred CCchHHHHHHHHHHHHHHCCCCceEEeC
Confidence 4469999999999999999999877643
No 146
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=54.23 E-value=15 Score=31.40 Aligned_cols=31 Identities=32% Similarity=0.288 Sum_probs=26.0
Q ss_pred EEEEecCCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 78 VIHVSGTKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 78 vIhVTGTnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
+++--|--||||++..++..|.+.|.++.+.
T Consensus 4 ~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~ 34 (104)
T cd02042 4 VANQKGGVGKTTTAVNLAAALARRGKRVLLI 34 (104)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHhCCCcEEEE
Confidence 3445667899999999999999999998765
No 147
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=53.79 E-value=3.6e+02 Score=30.09 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=27.1
Q ss_pred cEEEEecC--CCCchHHHHHHHHHH-HCCCCeEEEcC
Q 007911 77 KVIHVSGT--KGKGSTCTFCEAILR-ECGFRTGLFTS 110 (585)
Q Consensus 77 ~vIhVTGT--nGKgST~aml~sIL~-~~G~kvGl~tS 110 (585)
.+|.+.|. -|||||++-++..|. +.|++|++.+.
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~ 136 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVAC 136 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 46777774 579999999999987 57999987654
No 148
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=53.60 E-value=8.8 Score=42.18 Aligned_cols=45 Identities=16% Similarity=0.401 Sum_probs=29.0
Q ss_pred CccEEEEecCCC--CchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHH
Q 007911 75 ELKVIHVSGTKG--KGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLF 134 (585)
Q Consensus 75 ~l~vIhVTGTnG--KgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~ 134 (585)
+-.++-++|.|| |+|.|.++. |+|. |. .-+|++||.|++.+...+
T Consensus 348 rGelvFliG~NGsGKST~~~LLt----------GL~~-Pq----sG~I~ldg~pV~~e~led 394 (546)
T COG4615 348 RGELVFLIGGNGSGKSTLAMLLT----------GLYQ-PQ----SGEILLDGKPVSAEQLED 394 (546)
T ss_pred cCcEEEEECCCCCcHHHHHHHHh----------cccC-CC----CCceeECCccCCCCCHHH
Confidence 445788999996 555555544 3332 11 124999999999876543
No 149
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=53.45 E-value=13 Score=36.88 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=28.7
Q ss_pred cEEEEecCCC--CchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHH
Q 007911 77 KVIHVSGTKG--KGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITED 130 (585)
Q Consensus 77 ~vIhVTGTnG--KgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~ 130 (585)
..+.|+|-|| |||.-++|+.+++...-. |+++|.+|...
T Consensus 29 e~~~i~G~NG~GKTtLLRilaGLl~p~~G~---------------v~~~~~~i~~~ 69 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAGLLRPDAGE---------------VYWQGEPIQNV 69 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHcccCCCCCe---------------EEecCCCCccc
Confidence 5789999985 888889999999864322 56666666543
No 150
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=53.14 E-value=22 Score=39.62 Aligned_cols=46 Identities=20% Similarity=0.246 Sum_probs=36.8
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHH
Q 007911 76 LKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFL 133 (585)
Q Consensus 76 l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~ 133 (585)
--+|+|+|-+ ||||.+..|..+|+..|++++. |.+|+..++.++..
T Consensus 212 PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgv------------ISiDDfYLt~eer~ 259 (460)
T PLN03046 212 PLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSAT------------LSIDDFYLTAEGQA 259 (460)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCceEE------------EEECCccCChHHHH
Confidence 3589999975 7999999999999988888765 56788887766543
No 151
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=52.80 E-value=11 Score=38.78 Aligned_cols=32 Identities=25% Similarity=0.252 Sum_probs=26.2
Q ss_pred cEEEEec--CCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 77 KVIHVSG--TKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 77 ~vIhVTG--TnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
++|.|.| =-||||||.-|+..|.+.|+||-++
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLli 35 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVV 35 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence 4566664 4579999999999999999998654
No 152
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=52.60 E-value=15 Score=34.69 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=22.9
Q ss_pred cCCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 83 GTKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 83 GTnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
|--||||++.-|+..|.+.|+||.++
T Consensus 9 gG~GKTt~a~~LA~~la~~g~~vllv 34 (169)
T cd02037 9 GGVGKSTVAVNLALALAKLGYKVGLL 34 (169)
T ss_pred CcCChhHHHHHHHHHHHHcCCcEEEE
Confidence 45689999999999999999999664
No 153
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=52.53 E-value=15 Score=41.00 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=25.0
Q ss_pred ecC-CCCchHHHHHHHHHHHCCCCeEEEc
Q 007911 82 SGT-KGKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 82 TGT-nGKgST~aml~sIL~~~G~kvGl~t 109 (585)
|+| -|||+++.-|...|++.|++|+.|-
T Consensus 7 T~t~vGKT~vt~~L~~~L~~~G~~V~~fK 35 (449)
T TIGR00379 7 TSSGVGKTTISTGIMKALSRRKLRVQPFK 35 (449)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCceeEEc
Confidence 444 6999999999999999999999886
No 154
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=52.07 E-value=27 Score=38.66 Aligned_cols=39 Identities=23% Similarity=0.199 Sum_probs=26.6
Q ss_pred cCccEEEEecCC--CCchHHHHHHHHH--HHCCCCeEEEcCCc
Q 007911 74 AELKVIHVSGTK--GKGSTCTFCEAIL--RECGFRTGLFTSPH 112 (585)
Q Consensus 74 ~~l~vIhVTGTn--GKgST~aml~sIL--~~~G~kvGl~tSPh 112 (585)
.+-.+|++.|-| |||||.+.|+..+ ...+.++++.+...
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~ 231 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDS 231 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence 344688888887 5999999888654 33345677766543
No 155
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=51.67 E-value=13 Score=38.91 Aligned_cols=30 Identities=23% Similarity=0.199 Sum_probs=24.5
Q ss_pred EEEe--cCCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 79 IHVS--GTKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 79 IhVT--GTnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
|.|+ |--||||||.-|+..|...|+||-++
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLlI 34 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQI 34 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 4444 45689999999999999999998653
No 156
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=51.61 E-value=12 Score=39.21 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=25.4
Q ss_pred EEEEe--cCCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 78 VIHVS--GTKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 78 vIhVT--GTnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
+|+|. |=-|||||+..|+.+|.+.|+||.+.
T Consensus 2 vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlI 34 (296)
T TIGR02016 2 IIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQL 34 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45444 45689999999999999999999664
No 157
>COG4240 Predicted kinase [General function prediction only]
Probab=51.39 E-value=32 Score=35.36 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCC-CcccCccEEEEecC--CCCchHHHHHHHHHHHCC-CCeEEE
Q 007911 59 RMSMYLKILGLE-DRIAELKVIHVSGT--KGKGSTCTFCEAILRECG-FRTGLF 108 (585)
Q Consensus 59 ~~~~~L~~Lg~~-~p~~~l~vIhVTGT--nGKgST~aml~sIL~~~G-~kvGl~ 108 (585)
-...++.++.-. .+..+--+++|.|. .||+|++..|..+|.+.| ++|+.+
T Consensus 32 l~Lpll~Kiap~~qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~l 85 (300)
T COG4240 32 LHLPLLAKIAPWAQERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATL 85 (300)
T ss_pred HHHHHHHhhhhhhhhcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEe
Confidence 344444443311 23344458999996 679999999999999988 677654
No 158
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=51.20 E-value=1.3e+02 Score=30.88 Aligned_cols=28 Identities=14% Similarity=0.013 Sum_probs=24.8
Q ss_pred EecCCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 81 VSGTKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 81 VTGTnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
--|--|||++++.++..|...|.+|.++
T Consensus 10 ~KGGvGKSt~a~~la~~l~~~g~~vl~i 37 (241)
T PRK13886 10 GKGGVGKSFIAATIAQYKASKGQKPLCI 37 (241)
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 3467899999999999999999999887
No 159
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=50.85 E-value=13 Score=37.88 Aligned_cols=31 Identities=26% Similarity=0.241 Sum_probs=25.5
Q ss_pred cEEEEec--CCCCchHHHHHHHHHHHCCCCeEE
Q 007911 77 KVIHVSG--TKGKGSTCTFCEAILRECGFRTGL 107 (585)
Q Consensus 77 ~vIhVTG--TnGKgST~aml~sIL~~~G~kvGl 107 (585)
++|.|+| =-||||||.-|+..|.+.|+||-+
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLl 35 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQ 35 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 4666664 447999999999999999999855
No 160
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=50.09 E-value=25 Score=38.99 Aligned_cols=34 Identities=24% Similarity=0.179 Sum_probs=27.2
Q ss_pred cEEEEecCC--CCchHHHHHHHHHH--HCCCCeEEEcC
Q 007911 77 KVIHVSGTK--GKGSTCTFCEAILR--ECGFRTGLFTS 110 (585)
Q Consensus 77 ~vIhVTGTn--GKgST~aml~sIL~--~~G~kvGl~tS 110 (585)
++|.+.|-+ |||||+..|+..+. ..|++|++++.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~ 259 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITL 259 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 577887765 69999999998886 56789998764
No 161
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=50.06 E-value=29 Score=38.06 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=25.2
Q ss_pred cEEEEecCC--CCchHHHHHHHHHHH----CCCCeEEEcC
Q 007911 77 KVIHVSGTK--GKGSTCTFCEAILRE----CGFRTGLFTS 110 (585)
Q Consensus 77 ~vIhVTGTn--GKgST~aml~sIL~~----~G~kvGl~tS 110 (585)
.+|.+.|.+ |||||++-+++.|.. .|.+|++.+.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~ 214 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITI 214 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEec
Confidence 455555544 799999999998874 4788887654
No 162
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=50.06 E-value=12 Score=38.76 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=24.2
Q ss_pred EEEEe---cCCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 78 VIHVS---GTKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 78 vIhVT---GTnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
+|.|+ |=-||+||+.=++-.|...|+|||++
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~l 35 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLL 35 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEE
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 45565 45689999999999999999999985
No 163
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=49.90 E-value=19 Score=41.69 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=33.2
Q ss_pred CccEEEEec--CCCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 007911 75 ELKVIHVSG--TKGKGSTCTFCEAILRECGFRTGLFTSPH 112 (585)
Q Consensus 75 ~l~vIhVTG--TnGKgST~aml~sIL~~~G~kvGl~tSPh 112 (585)
.+++|+|.| =.||||.+.-|-..|++.|+|||.+...|
T Consensus 9 ~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh~~ 48 (597)
T PRK14491 9 SIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKHAH 48 (597)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEcCC
Confidence 468999999 56899999999999999999999987654
No 164
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=49.79 E-value=1.2e+02 Score=32.59 Aligned_cols=104 Identities=19% Similarity=0.321 Sum_probs=59.7
Q ss_pred cEEEEe--cCCCCchHHHHHHHHHHHCCCCeEEEcC-C--ccccccce--------EE--ECCEecCHH-HHHHHHHHHH
Q 007911 77 KVIHVS--GTKGKGSTCTFCEAILRECGFRTGLFTS-P--HLIDVRER--------FR--INGLDITED-KFLFYFWECW 140 (585)
Q Consensus 77 ~vIhVT--GTnGKgST~aml~sIL~~~G~kvGl~tS-P--hL~~~rER--------I~--inG~~is~~-~f~~~f~~v~ 140 (585)
++|-++ |=-||||+++-++-.|.+.|.||-+.++ | +|-+.-.. |. +++..|+.+ .+.+|+.++.
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~elg~~~~~I~~nL~a~eiD~~~~l~ey~~~v~ 82 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELGHDPRKVGPNLDALELDPEKALEEYWDEVK 82 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhccccCCchhhcCCCCceeeecHHHHHHHHHHHHH
Confidence 344444 4679999999999999999988766643 2 22222111 21 123444433 3455555555
Q ss_pred HhhhhhccCC----------CCCCCHHHHHHHHHHHHhh-hCCCcEEEEee
Q 007911 141 HLLRENVTED----------LPMPPLFQFLTVLAFKIFV-CEQVDVAIIEV 180 (585)
Q Consensus 141 ~~l~~~~~~~----------~~~ps~Fe~lTllA~~~F~-~~~vd~aVlEv 180 (585)
+.+....... ...|..-|++.+.++..+. +.+.|++|+-+
T Consensus 83 ~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~Dt 133 (322)
T COG0003 83 DYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDT 133 (322)
T ss_pred HHHHhhccccccchhHHHHHhhCCCHHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 5554332211 1246666766666665554 34578888877
No 165
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=49.29 E-value=23 Score=33.48 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=27.7
Q ss_pred EEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcCC
Q 007911 78 VIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTSP 111 (585)
Q Consensus 78 vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~tSP 111 (585)
+|.|.|. .||||.+..|+..|...|+++.....|
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~ 37 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREP 37 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 5778885 589999999999999999988555444
No 166
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=48.95 E-value=16 Score=34.19 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=22.8
Q ss_pred CCCchHHHHHHHHHHHCCCCeEEE
Q 007911 85 KGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 85 nGKgST~aml~sIL~~~G~kvGl~ 108 (585)
-|||+++.-|...|++.|+||+++
T Consensus 9 ~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 9 VGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred ccHHHHHHHHHHHHHHCCCcEEEE
Confidence 699999999999999999999987
No 167
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=48.56 E-value=16 Score=38.24 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=28.4
Q ss_pred cEEEEe---cCCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 77 KVIHVS---GTKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 77 ~vIhVT---GTnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
.+|.|+ |--||+||+..++..|...|++||++
T Consensus 48 ~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglL 82 (300)
T KOG3022|consen 48 HIILVLSGKGGVGKSTVTVNLALALASEGKKVGLL 82 (300)
T ss_pred eEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEE
Confidence 477776 66789999999999999999999987
No 168
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=47.68 E-value=68 Score=30.27 Aligned_cols=72 Identities=14% Similarity=0.143 Sum_probs=41.5
Q ss_pred hCCCcEEEEeecCCCC---cc--ccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccCCCC--cEEeeCCchHHH
Q 007911 170 CEQVDVAIIEVGLGGE---KD--STNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQI--PAFTVPQLSEAM 242 (585)
Q Consensus 170 ~~~vd~aVlEvG~gGr---~D--~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~g~--~aV~~~qd~~~~ 242 (585)
...+|+++|=...... +- -++++.+|.++|||-++.+. +-+++.++|.-+-..|. +..++.-..+..
T Consensus 61 a~dad~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~~------~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi 134 (143)
T PF10662_consen 61 AQDADVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKIDLPS------DDANIERAKKWLKNAGVKEIFEVSAVTGEGI 134 (143)
T ss_pred HhhCCEEEEEecCCCCCccCCchhhcccCCCEEEEEECccCcc------chhhHHHHHHHHHHcCCCCeEEEECCCCcCH
Confidence 3588998888865521 11 24556689999999998762 34556555544443332 344444444444
Q ss_pred HHHHH
Q 007911 243 SVLQD 247 (585)
Q Consensus 243 ~vl~~ 247 (585)
+-|.+
T Consensus 135 ~eL~~ 139 (143)
T PF10662_consen 135 EELKD 139 (143)
T ss_pred HHHHH
Confidence 44443
No 169
>PRK10867 signal recognition particle protein; Provisional
Probab=47.55 E-value=46 Score=37.08 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=28.9
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHC-CCCeEEEcC
Q 007911 76 LKVIHVSGTK--GKGSTCTFCEAILREC-GFRTGLFTS 110 (585)
Q Consensus 76 l~vIhVTGTn--GKgST~aml~sIL~~~-G~kvGl~tS 110 (585)
..+|.++|-+ |||||++-++..|... |++|++.+.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~ 137 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAA 137 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 4578888854 7999999999999888 999987654
No 170
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=46.83 E-value=21 Score=32.10 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=23.5
Q ss_pred cCCCCchHHHHHHHHHHHCCCCeEEEc
Q 007911 83 GTKGKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 83 GTnGKgST~aml~sIL~~~G~kvGl~t 109 (585)
|-.||||++..++..|.+.|+++.++.
T Consensus 8 gG~GKTt~a~~la~~l~~~g~~V~~id 34 (116)
T cd02034 8 GGVGKTTIAALLARYLAEKGKPVLAID 34 (116)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 578999999999999999999987654
No 171
>PRK06696 uridine kinase; Validated
Probab=46.62 E-value=26 Score=34.80 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=27.0
Q ss_pred CccEEEEec--CCCCchHHHHHHHHHHHCCCCeE
Q 007911 75 ELKVIHVSG--TKGKGSTCTFCEAILRECGFRTG 106 (585)
Q Consensus 75 ~l~vIhVTG--TnGKgST~aml~sIL~~~G~kvG 106 (585)
+-.+|+|+| -.||||.+..|+..|...|.++.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~ 54 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVI 54 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 346999999 57999999999999998886653
No 172
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=46.50 E-value=18 Score=36.92 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=27.0
Q ss_pred cEEEEec---CCCCchHHHHHHHHHHHCCCCeEEEc
Q 007911 77 KVIHVSG---TKGKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 77 ~vIhVTG---TnGKgST~aml~sIL~~~G~kvGl~t 109 (585)
++|.++- =-||||.+.+|++.|.+.|.+|.++-
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lID 37 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAARGARVALID 37 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 5566654 45799999999999999999997763
No 173
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=45.59 E-value=24 Score=37.38 Aligned_cols=37 Identities=30% Similarity=0.359 Sum_probs=30.3
Q ss_pred CccEEEEecC---CCCchHHHHHHHHHHHCCCCeEEEcCC
Q 007911 75 ELKVIHVSGT---KGKGSTCTFCEAILRECGFRTGLFTSP 111 (585)
Q Consensus 75 ~l~vIhVTGT---nGKgST~aml~sIL~~~G~kvGl~tSP 111 (585)
+-++|+|-|| -||=||+..|...|++.|+++++..|-
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTG 150 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATG 150 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-S
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecC
Confidence 4578999998 499999999999999999999888764
No 174
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=45.16 E-value=29 Score=36.48 Aligned_cols=45 Identities=31% Similarity=0.552 Sum_probs=37.0
Q ss_pred HHHHHHHhCCCCcccCccEEEEec-------CCCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 007911 60 MSMYLKILGLEDRIAELKVIHVSG-------TKGKGSTCTFCEAILRECGFRTGLFTSPH 112 (585)
Q Consensus 60 ~~~~L~~Lg~~~p~~~l~vIhVTG-------TnGKgST~aml~sIL~~~G~kvGl~tSPh 112 (585)
.++=++.+|. +.+-+|-||| +-| .++|..+|.++|||||++.-|-
T Consensus 5 t~~em~~rGW----d~lDvilVtGDAYVDHPsFG----~AiIgR~Le~~GyrVgIiaQPd 56 (302)
T PF08497_consen 5 TREEMKARGW----DELDVILVTGDAYVDHPSFG----AAIIGRVLEAHGYRVGIIAQPD 56 (302)
T ss_pred CHHHHHHcCC----ccccEEEEeCcccccCcchh----HHHHHHHHHHcCCeEEEEeCCC
Confidence 3455677887 4667999999 556 8999999999999999998885
No 175
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=44.64 E-value=55 Score=31.73 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHCCCCeEEEcCCcccc
Q 007911 89 STCTFCEAILRECGFRTGLFTSPHLID 115 (585)
Q Consensus 89 ST~aml~sIL~~~G~kvGl~tSPhL~~ 115 (585)
+|+.++.++++..|-|+|++++.+..+
T Consensus 63 gTT~~tNAl~e~~g~~v~li~~~G~~d 89 (176)
T PF05378_consen 63 GTTVATNALLERKGARVGLITTGGFGD 89 (176)
T ss_pred ccHHHHHHHHhccCCCceEEeccCcHh
Confidence 357889999999999999998876443
No 176
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=43.20 E-value=10 Score=38.64 Aligned_cols=31 Identities=26% Similarity=0.236 Sum_probs=24.8
Q ss_pred cEEEEe--cCCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 77 KVIHVS--GTKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 77 ~vIhVT--GTnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
++|.|. |=-||||||.-|+..|.+.| ||.++
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLli 35 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLVI 35 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCC-EEEEE
Confidence 455555 55689999999999999999 98664
No 177
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=42.77 E-value=46 Score=33.18 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=25.3
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCe
Q 007911 75 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRT 105 (585)
Q Consensus 75 ~l~vIhVTGTn--GKgST~aml~sIL~~~G~kv 105 (585)
+-.+|+|+|-| ||||.+..|..+|+..+-.+
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~ 64 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELP 64 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence 45799999987 59999999999999876443
No 178
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=42.24 E-value=27 Score=30.59 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=23.4
Q ss_pred ecCCCCchHHHHHHHHHHHC-CCCeEEE
Q 007911 82 SGTKGKGSTCTFCEAILREC-GFRTGLF 108 (585)
Q Consensus 82 TGTnGKgST~aml~sIL~~~-G~kvGl~ 108 (585)
-|--||||++.-++..|.+. |++|.+.
T Consensus 8 kgg~gkt~~~~~la~~~~~~~~~~~~l~ 35 (106)
T cd03111 8 KGGVGATTLAANLAVALAKEAGRRVLLV 35 (106)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEE
Confidence 45568999999999999998 9999776
No 179
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=42.13 E-value=38 Score=31.93 Aligned_cols=34 Identities=26% Similarity=0.284 Sum_probs=26.6
Q ss_pred EEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcCC
Q 007911 78 VIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTSP 111 (585)
Q Consensus 78 vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~tSP 111 (585)
+|.++|- .||||++..+...|.+.|.++.++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 4566664 589999999999999999998776543
No 180
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=41.78 E-value=27 Score=42.03 Aligned_cols=35 Identities=14% Similarity=-0.048 Sum_probs=31.3
Q ss_pred cCccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 007911 74 AELKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 74 ~~l~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl~ 108 (585)
-.++.+-||||| |||-+++.|.+.|+..|.+++.+
T Consensus 25 ~~~~~~fI~GtnT~VGKT~vS~~L~~~~~~~g~~~~y~ 62 (817)
T PLN02974 25 LSCPAFAVWGANTAVGKTLVSAGLAAAAASRRSPVLYV 62 (817)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEE
Confidence 356899999998 99999999999999999988655
No 181
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=40.90 E-value=19 Score=35.90 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=22.2
Q ss_pred cCccEEEEecCCCCchHHH--HHHHHHHHCCCC
Q 007911 74 AELKVIHVSGTKGKGSTCT--FCEAILRECGFR 104 (585)
Q Consensus 74 ~~l~vIhVTGTnGKgST~a--ml~sIL~~~G~k 104 (585)
.+.++|+|||+.|-|||+. -.+.|+++...+
T Consensus 3 aKhPiIavTGSSGAGTTTts~aFrKiF~~~~I~ 35 (289)
T COG3954 3 AKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNIH 35 (289)
T ss_pred CCCceEEEecCCCCCcccHHHHHHHHHHhcCcc
Confidence 4678999999998876654 445677665543
No 182
>PRK12377 putative replication protein; Provisional
Probab=40.79 E-value=24 Score=36.20 Aligned_cols=36 Identities=22% Similarity=0.169 Sum_probs=26.2
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 007911 77 KVIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTSPH 112 (585)
Q Consensus 77 ~vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~tSPh 112 (585)
..+.+.|. .|||..+..+...|...|++|..++.+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~ 139 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPD 139 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHH
Confidence 34555553 3899999999999988899886655443
No 183
>PRK03846 adenylylsulfate kinase; Provisional
Probab=39.44 E-value=45 Score=32.45 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=24.8
Q ss_pred ccEEEEec--CCCCchHHHHHHHHHHHCCCCe
Q 007911 76 LKVIHVSG--TKGKGSTCTFCEAILRECGFRT 105 (585)
Q Consensus 76 l~vIhVTG--TnGKgST~aml~sIL~~~G~kv 105 (585)
-.+|.++| -.||||.+..|+..|...|..+
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~ 55 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEALHELGVST 55 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 35899999 6689999999999998777655
No 184
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=39.42 E-value=1.1e+02 Score=33.36 Aligned_cols=58 Identities=21% Similarity=0.201 Sum_probs=36.2
Q ss_pred CcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhh
Q 007911 71 DRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLR 144 (585)
Q Consensus 71 ~p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~ 144 (585)
.|.+ +-+.|-+|| |||.|+.++..-|+..-.+.. -+.||....... -+.+.++|+.+.
T Consensus 41 ~p~n-~~iyG~~GT-GKT~~~~~v~~~l~~~~~~~~------------~~yINc~~~~t~--~~i~~~i~~~~~ 98 (366)
T COG1474 41 RPSN-IIIYGPTGT-GKTATVKFVMEELEESSANVE------------VVYINCLELRTP--YQVLSKILNKLG 98 (366)
T ss_pred CCcc-EEEECCCCC-CHhHHHHHHHHHHHhhhccCc------------eEEEeeeeCCCH--HHHHHHHHHHcC
Confidence 4443 445566665 899999999999987643332 166777665543 244555666554
No 185
>PLN02924 thymidylate kinase
Probab=38.76 E-value=45 Score=33.47 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=30.7
Q ss_pred CcccCccEEEEecC--CCCchHHHHHHHHHHHCCCCeEE
Q 007911 71 DRIAELKVIHVSGT--KGKGSTCTFCEAILRECGFRTGL 107 (585)
Q Consensus 71 ~p~~~l~vIhVTGT--nGKgST~aml~sIL~~~G~kvGl 107 (585)
.|..+-.+|.|.|- .||||.+.+|+..|+..|+++-.
T Consensus 11 ~~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~ 49 (220)
T PLN02924 11 SVESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAEL 49 (220)
T ss_pred CcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCcee
Confidence 34455678999995 68999999999999999998743
No 186
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=38.66 E-value=27 Score=36.92 Aligned_cols=29 Identities=28% Similarity=0.280 Sum_probs=24.7
Q ss_pred ecCCCCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 82 SGTKGKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 82 TGTnGKgST~aml~sIL~~~G~kvGl~tS 110 (585)
-|--||||+++.++--+...|++|-+.++
T Consensus 9 KGGVGKTT~aaA~A~~~A~~G~rtLlvS~ 37 (305)
T PF02374_consen 9 KGGVGKTTVAAALALALARRGKRTLLVST 37 (305)
T ss_dssp STTSSHHHHHHHHHHHHHHTTS-EEEEES
T ss_pred CCCCCcHHHHHHHHHHHhhCCCCeeEeec
Confidence 46789999999999999999999988754
No 187
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=38.60 E-value=29 Score=34.73 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=31.4
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 007911 77 KVIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTSPH 112 (585)
Q Consensus 77 ~vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~tSPh 112 (585)
.+|.+-|- .||||.+.+|...|++.|++|-+..-|+
T Consensus 4 ~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~ 41 (208)
T COG0125 4 MFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPG 41 (208)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 57888885 6899999999999999999998877776
No 188
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=38.12 E-value=31 Score=34.82 Aligned_cols=30 Identities=30% Similarity=0.266 Sum_probs=23.4
Q ss_pred EEEEecCCCCchHHHHHHHHHH-HCCCCeEE
Q 007911 78 VIHVSGTKGKGSTCTFCEAILR-ECGFRTGL 107 (585)
Q Consensus 78 vIhVTGTnGKgST~aml~sIL~-~~G~kvGl 107 (585)
+...-|=-|||||+..++..|. ..|+||-+
T Consensus 7 v~n~KGGvGKTT~a~nLa~~La~~~~~kVLl 37 (259)
T COG1192 7 VANQKGGVGKTTTAVNLAAALAKRGGKKVLL 37 (259)
T ss_pred EEecCCCccHHHHHHHHHHHHHHhcCCcEEE
Confidence 3344566689999999999999 55689855
No 189
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=37.67 E-value=29 Score=37.03 Aligned_cols=40 Identities=33% Similarity=0.454 Sum_probs=34.2
Q ss_pred cccCccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEEcCC
Q 007911 72 RIAELKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLFTSP 111 (585)
Q Consensus 72 p~~~l~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl~tSP 111 (585)
+..+.++|.|-||. ||=||+..|...+++.|+++++..|-
T Consensus 144 ~k~~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTg 186 (339)
T COG3367 144 RKVDAKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATG 186 (339)
T ss_pred cccCCcEEEEeccccccchhHHHHHHHHHHHHhCCccceEecC
Confidence 33456799999995 99999999999999999999887654
No 190
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=37.64 E-value=51 Score=31.46 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=26.2
Q ss_pred ccEEEEec--CCCCchHHHHHHHHHHHCCCCeE
Q 007911 76 LKVIHVSG--TKGKGSTCTFCEAILRECGFRTG 106 (585)
Q Consensus 76 l~vIhVTG--TnGKgST~aml~sIL~~~G~kvG 106 (585)
-.+|.++| -.||||++..|...|...|..+.
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~ 50 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLESKGYRVY 50 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 36899999 78999999999999988776553
No 191
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=37.53 E-value=41 Score=37.04 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=30.2
Q ss_pred CccEEEEec--CCCCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 75 ELKVIHVSG--TKGKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 75 ~l~vIhVTG--TnGKgST~aml~sIL~~~G~kvGl~tS 110 (585)
+-++|.++| =.|||||++-++..+...|++|++++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIta 242 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITT 242 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 346888888 458999999999999888999998775
No 192
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=37.44 E-value=1.2e+02 Score=34.84 Aligned_cols=43 Identities=12% Similarity=0.172 Sum_probs=25.2
Q ss_pred HHHHHHhcccCCCCcEEee-----CCchHHHHHHHHHHHhcCccEEEe
Q 007911 217 DIAFHKAGIFKPQIPAFTV-----PQLSEAMSVLQDRALELMVPLEVA 259 (585)
Q Consensus 217 ~IA~~KagI~k~g~~aV~~-----~qd~~~~~vl~~~a~~~~~~l~~~ 259 (585)
++.+|-..+-+-|.|+|+. .|.++-.+.+++.|++.+++..+.
T Consensus 389 NL~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~l~~~~~~~g~~~~v~ 436 (587)
T PRK13507 389 NLLHHIGTVKKSGINPVVCINAFYTDTHAEIAIVRRLAEQAGARVAVS 436 (587)
T ss_pred HHHHHHHHHHHcCCCeEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 3344433333467777653 244445677888888877766553
No 193
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=37.26 E-value=26 Score=34.57 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=26.0
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCe
Q 007911 77 KVIHVSGT--KGKGSTCTFCEAILRECGFRT 105 (585)
Q Consensus 77 ~vIhVTGT--nGKgST~aml~sIL~~~G~kv 105 (585)
.+|=.||= .||||.+..++..|.+.|+.+
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~G~~~ 54 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAKGYHV 54 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 57888884 689999999999999999988
No 194
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=37.24 E-value=26 Score=36.40 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=31.9
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHH
Q 007911 76 LKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKF 132 (585)
Q Consensus 76 l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f 132 (585)
-.+.+.-|-| |||||-+||-.+|... +.+ |.++|.+++....
T Consensus 28 G~i~GllG~NGAGKTTtfRmILglle~~--------~G~-------I~~~g~~~~~~~~ 71 (300)
T COG4152 28 GEIFGLLGPNGAGKTTTFRMILGLLEPT--------EGE-------ITWNGGPLSQEIK 71 (300)
T ss_pred CeEEEeecCCCCCccchHHHHhccCCcc--------Cce-------EEEcCcchhhhhh
Confidence 3678888887 5999999998888751 222 8899999987743
No 195
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=36.68 E-value=32 Score=35.76 Aligned_cols=32 Identities=31% Similarity=0.540 Sum_probs=25.9
Q ss_pred cEEEEec----CCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 77 KVIHVSG----TKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 77 ~vIhVTG----TnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
+.|-||| .=|||-|++-+..+|+..|++|-..
T Consensus 2 KyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~ 37 (276)
T PF06418_consen 2 KYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMI 37 (276)
T ss_dssp EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEE
T ss_pred cEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeee
Confidence 5688888 5799999999999999999998653
No 196
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=36.58 E-value=49 Score=31.66 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=26.6
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCeEE
Q 007911 77 KVIHVSGT--KGKGSTCTFCEAILRECGFRTGL 107 (585)
Q Consensus 77 ~vIhVTGT--nGKgST~aml~sIL~~~G~kvGl 107 (585)
.+|.|.|. .||||.+.+|+.-|...|+++-.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~ 36 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQENGYDVLF 36 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 57889996 58999999999999999988743
No 197
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=36.31 E-value=68 Score=38.30 Aligned_cols=35 Identities=26% Similarity=0.248 Sum_probs=27.2
Q ss_pred cEEEEecCC--CCchHHHHHHHHHH-HCC-CCeEEEcCC
Q 007911 77 KVIHVSGTK--GKGSTCTFCEAILR-ECG-FRTGLFTSP 111 (585)
Q Consensus 77 ~vIhVTGTn--GKgST~aml~sIL~-~~G-~kvGl~tSP 111 (585)
.+|.+.|-| |||||++.|+..+. ..| .+|++.+.-
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D 224 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD 224 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc
Confidence 578888877 69999999999884 556 588887653
No 198
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=35.77 E-value=1.5e+02 Score=28.38 Aligned_cols=36 Identities=25% Similarity=0.207 Sum_probs=21.6
Q ss_pred HHHHHHHHhCCCCcccCccEEEEecCC--CCchHHHHHHHHHH
Q 007911 59 RMSMYLKILGLEDRIAELKVIHVSGTK--GKGSTCTFCEAILR 99 (585)
Q Consensus 59 ~~~~~L~~Lg~~~p~~~l~vIhVTGTn--GKgST~aml~sIL~ 99 (585)
++..+|+..- ..-..|.|+|.+ ||||+...+...+.
T Consensus 13 ~~~~~l~~~v-----~~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 13 LQAAYLWLAV-----EARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HHHHHHHHHH-----hCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4555555442 223578999977 57666666655554
No 199
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=35.26 E-value=37 Score=32.79 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=22.0
Q ss_pred EEEEecC--CCCchHHHHHHHHHHHCCCCeEEEc
Q 007911 78 VIHVSGT--KGKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 78 vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~t 109 (585)
+|+|+|- .||||++.+|..+| .+.++.++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~ 32 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIIS 32 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEE
Confidence 4788884 58999999999998 344555443
No 200
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=35.07 E-value=2.2e+02 Score=27.73 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=24.4
Q ss_pred cCccEEEEecCCCCchHHHHHHHHHHHC--CCCeEEEc
Q 007911 74 AELKVIHVSGTKGKGSTCTFCEAILREC--GFRTGLFT 109 (585)
Q Consensus 74 ~~l~vIhVTGTnGKgST~aml~sIL~~~--G~kvGl~t 109 (585)
...++|+++|..|-|-|+-+ .+++++. +.+++++.
T Consensus 20 ~~~~~i~~~G~~gsGKTTli-~~l~~~~~~~~~v~v~~ 56 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLI-EKLIDNLKDEVKIAVIE 56 (207)
T ss_pred cCcEEEEEECCCCCCHHHHH-HHHHHHHhcCCeEEEEE
Confidence 46789999999988887643 4455543 45677665
No 201
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=34.92 E-value=44 Score=37.15 Aligned_cols=35 Identities=26% Similarity=0.324 Sum_probs=27.2
Q ss_pred ccEEEEecCC--CCchHHHHHHHHH-HHCCCCeEEEcC
Q 007911 76 LKVIHVSGTK--GKGSTCTFCEAIL-RECGFRTGLFTS 110 (585)
Q Consensus 76 l~vIhVTGTn--GKgST~aml~sIL-~~~G~kvGl~tS 110 (585)
-.+|.|.|.+ |||||++-++.-+ ...|.+|++++.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~ 260 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTT 260 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecc
Confidence 3578888864 7999999998754 567999988764
No 202
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=33.79 E-value=1.4e+02 Score=34.04 Aligned_cols=87 Identities=16% Similarity=0.280 Sum_probs=48.5
Q ss_pred CcEEEEeecCCCCcccccccc--------CCcEEEEc-CCC---------------cccccccCCCHHHHHHHHhcccCC
Q 007911 173 VDVAIIEVGLGGEKDSTNVIK--------EPVVCGVT-SLG---------------MDHMELLGNTLNDIAFHKAGIFKP 228 (585)
Q Consensus 173 vd~aVlEvG~gGr~D~Tnvi~--------~P~vavIT-NIg---------------~DHld~lG~Tle~IA~~KagI~k~ 228 (585)
.||+|-|.|-|-.+-+-.+++ +|+++|+. .|. .+-++.+..-++++.+|=..+-+-
T Consensus 276 aDyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~hGG~~~~~l~~~en~~al~~G~~NL~~Hi~n~~~f 355 (524)
T cd00477 276 ADYVVTEAGFGADLGAEKFFNIKCRYSGLKPDAVVLVATVRALKMHGGVPKVTLGLEENLEALEKGFANLRKHIENIKKF 355 (524)
T ss_pred cCeEEeeccccCCCCCceeeeeeeccCCCCCCEEEEEEehHHHHHhCCCCcccCCCccCHHHHHhHHHHHHHHHHHHHHc
Confidence 499999999883332222211 67776543 231 222222222334444444444456
Q ss_pred CCcEEee-----CCchHHHHHHHHHHHhcCccEEEe
Q 007911 229 QIPAFTV-----PQLSEAMSVLQDRALELMVPLEVA 259 (585)
Q Consensus 229 g~~aV~~-----~qd~~~~~vl~~~a~~~~~~l~~~ 259 (585)
|.|+|+. .|.++-.+.+++.|++.+++....
T Consensus 356 g~p~VVaiN~F~~Dt~~Ei~~v~~~~~~~g~~~~~~ 391 (524)
T cd00477 356 GVPVVVAINKFSTDTDAELALVRKLAEEAGAFVAVS 391 (524)
T ss_pred CCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 7777653 244455677888888888776554
No 203
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=33.15 E-value=58 Score=32.32 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=26.1
Q ss_pred CccEEEEecCCCCc--hHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHH
Q 007911 75 ELKVIHVSGTKGKG--STCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKF 132 (585)
Q Consensus 75 ~l~vIhVTGTnGKg--ST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f 132 (585)
.--++|+-|-||-| |.-+-++.++...| .|+++|.+++.-..
T Consensus 24 aGe~~HliGPNGaGKSTLLA~lAGm~~~sG----------------si~~~G~~l~~~~~ 67 (248)
T COG4138 24 AGEILHLVGPNGAGKSTLLARMAGMTSGSG----------------SIQFAGQPLEAWSA 67 (248)
T ss_pred cceEEEEECCCCccHHHHHHHHhCCCCCCc----------------eEEECCcchhHHhH
Confidence 44689999999755 44333333332222 28999999876543
No 204
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=32.86 E-value=70 Score=36.31 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=29.0
Q ss_pred CccEEEEec------CCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 75 ELKVIHVSG------TKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 75 ~l~vIhVTG------TnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
.-++|.||. --|||||+.=|+..|.+.|.|+.+.
T Consensus 37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l~~ 76 (524)
T cd00477 37 DGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIAC 76 (524)
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE
Confidence 347999999 3489999999999999999987643
No 205
>PRK01254 hypothetical protein; Provisional
Probab=32.72 E-value=39 Score=39.61 Aligned_cols=49 Identities=27% Similarity=0.455 Sum_probs=41.3
Q ss_pred hHHHHHHHHHhCCCCcccCccEEEEec-------CCCCchHHHHHHHHHHHCCCCeEEEcCCcc
Q 007911 57 LQRMSMYLKILGLEDRIAELKVIHVSG-------TKGKGSTCTFCEAILRECGFRTGLFTSPHL 113 (585)
Q Consensus 57 l~~~~~~L~~Lg~~~p~~~l~vIhVTG-------TnGKgST~aml~sIL~~~G~kvGl~tSPhL 113 (585)
|+-.++=++.+|+ +.+-+|-||| +-| .+.|..+|.++|||||++.-|--
T Consensus 25 LP~t~~em~~~Gw----d~~DiilVtGDAYVDHPsFG----~AiigR~Le~~G~rVgIiaQPdw 80 (707)
T PRK01254 25 LPMSREEMDQLGW----DSCDIIIVTGDAYVDHPSFG----MAIIGRMLEAQGFRVGIIAQPDW 80 (707)
T ss_pred CCCCHHHHHHcCC----CccCEEEEeCcccccCccch----HHHHHHHHHHcCCeEEEEeCCCC
Confidence 5666777888997 4667999999 566 89999999999999999988853
No 206
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=32.61 E-value=1.7e+02 Score=33.59 Aligned_cols=86 Identities=16% Similarity=0.336 Sum_probs=46.1
Q ss_pred CcEEEEeecCCCCcccccccc--------CCcEEEE-cCCCcccccccCC---------C-------HHHHHHHHhcccC
Q 007911 173 VDVAIIEVGLGGEKDSTNVIK--------EPVVCGV-TSLGMDHMELLGN---------T-------LNDIAFHKAGIFK 227 (585)
Q Consensus 173 vd~aVlEvG~gGr~D~Tnvi~--------~P~vavI-TNIg~DHld~lG~---------T-------le~IA~~KagI~k 227 (585)
.||+|-|+|-|-.+-+-.+++ +|+++|+ .+|. -+-+||. + +.++.++-.-+=+
T Consensus 293 adyvvTEaGFGaDlGaEKF~dIkcr~~gl~P~~~VlVaTvr--aLK~hgg~~~~~l~~en~Eal~sGl~NL~RHIenvr~ 370 (557)
T PRK13505 293 ADYVVTEAGFGADLGAEKFLDIKCRKAGLKPDAVVIVATVR--ALKMHGGVAKDDLKEENVEALKKGFANLERHIENIRK 370 (557)
T ss_pred CCEEEecccccCCCCCceeeeeecccCCCCCCEEEEEeehH--HHHHcCCCChhhccccCHHHHHHHHHHHHHHHHHHHH
Confidence 499999999884333222211 5777654 3332 1333331 1 2233333222223
Q ss_pred CCCcEEe--eC---CchHHHHHHHHHHHhcCccEEEec
Q 007911 228 PQIPAFT--VP---QLSEAMSVLQDRALELMVPLEVAA 260 (585)
Q Consensus 228 ~g~~aV~--~~---qd~~~~~vl~~~a~~~~~~l~~~~ 260 (585)
-|.|+|+ |. |.++-.+.+++.|++.++++....
T Consensus 371 FGvPvVVAINKFd~DTe~Ei~~I~~~c~e~Gv~va~~~ 408 (557)
T PRK13505 371 FGVPVVVAINKFVTDTDAEIAALKELCEELGVEVALSE 408 (557)
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 4666554 42 334356778899999888876543
No 207
>PRK00698 tmk thymidylate kinase; Validated
Probab=32.49 E-value=62 Score=31.05 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=25.6
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCeEE
Q 007911 77 KVIHVSGT--KGKGSTCTFCEAILRECGFRTGL 107 (585)
Q Consensus 77 ~vIhVTGT--nGKgST~aml~sIL~~~G~kvGl 107 (585)
.+|.|.|- .||||.+..|+.-|...|+.+-.
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~ 36 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQQGRDVVF 36 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceeE
Confidence 57888884 68999999999999988866543
No 208
>PRK07933 thymidylate kinase; Validated
Probab=32.12 E-value=60 Score=32.25 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=28.6
Q ss_pred EEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcCC
Q 007911 78 VIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTSP 111 (585)
Q Consensus 78 vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~tSP 111 (585)
+|.|-|. .||||.+..|...|+..|++|.+..-|
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P 37 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFP 37 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 5777774 589999999999999999998776655
No 209
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=32.12 E-value=34 Score=29.91 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=19.5
Q ss_pred EEEEecC--CCCchHHHHHHHHHHHCCCCe
Q 007911 78 VIHVSGT--KGKGSTCTFCEAILRECGFRT 105 (585)
Q Consensus 78 vIhVTGT--nGKgST~aml~sIL~~~G~kv 105 (585)
+|.|+|. .||||+|..|+.-| |+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~---~~~~ 27 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL---GFPV 27 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCeE
Confidence 5777885 58999999998877 6554
No 210
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=32.10 E-value=49 Score=34.14 Aligned_cols=30 Identities=30% Similarity=0.473 Sum_probs=25.8
Q ss_pred EEEEec----CCCCchHHHHHHHHHHHCCCCeEE
Q 007911 78 VIHVSG----TKGKGSTCTFCEAILRECGFRTGL 107 (585)
Q Consensus 78 vIhVTG----TnGKgST~aml~sIL~~~G~kvGl 107 (585)
.|-||| .=|||-|++-+..+|++.|++|-.
T Consensus 2 yi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~ 35 (255)
T cd03113 2 YIFVTGGVVSSLGKGITAASLGRLLKARGLKVTA 35 (255)
T ss_pred EEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEE
Confidence 566777 569999999999999999999843
No 211
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=32.10 E-value=26 Score=39.39 Aligned_cols=96 Identities=20% Similarity=0.146 Sum_probs=56.0
Q ss_pred CccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCC
Q 007911 75 ELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMP 154 (585)
Q Consensus 75 ~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~p 154 (585)
..++|.|+|||||+++.++.-..+...+.++... .|..-. .-.+
T Consensus 63 ~~~vi~V~~~~~~~~~~a~~~y~~ps~~l~vigv--------------TGTNgK-Tt~t--------------------- 106 (475)
T COG0769 63 GVPVIVVTGTNGKLTTLALAFYGLPSGKLKVIGV--------------TGTNGK-TTTT--------------------- 106 (475)
T ss_pred CCCEEEEcCcHHHHHHHHHHhccCcccCceEEEE--------------cCCCcH-HHHH---------------------
Confidence 4568999999999999999888877644555222 221110 0000
Q ss_pred CHHHHHHHHHHHHhhhCCCcEEEEee-cCC-CCccccccccCCcEEEEcCCCcccccccC
Q 007911 155 PLFQFLTVLAFKIFVCEQVDVAIIEV-GLG-GEKDSTNVIKEPVVCGVTSLGMDHMELLG 212 (585)
Q Consensus 155 s~Fe~lTllA~~~F~~~~vd~aVlEv-G~g-Gr~D~Tnvi~~P~vavITNIg~DHld~lG 212 (585)
+++ ...+. ....++.++..|. +++ |..+.+... .|+...++|+..|++|-.+
T Consensus 107 ~~~----~~~~~-~~g~~~~~~gT~g~~~~~~~~~~~~~t-TP~~~~l~~~~~~~~d~~~ 160 (475)
T COG0769 107 SLL----AQILK-KLGKKTALIGTEGDELSPGILEPTGLT-TPEALDLQNLLRDLLDRGA 160 (475)
T ss_pred HHH----HHHHH-hcCCceEEEEEEeeeccCCcccccCCC-CccHHHHHHHHHHHHHcCC
Confidence 111 00111 2234566666665 342 555543333 6888888888888887766
No 212
>PRK06835 DNA replication protein DnaC; Validated
Probab=31.87 E-value=40 Score=36.05 Aligned_cols=37 Identities=22% Similarity=0.092 Sum_probs=26.3
Q ss_pred cCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCC
Q 007911 74 AELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSP 111 (585)
Q Consensus 74 ~~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSP 111 (585)
..+-+.|=+|| |||..+..++.-|...|++|..++.+
T Consensus 184 ~~Lll~G~~Gt-GKThLa~aIa~~l~~~g~~V~y~t~~ 220 (329)
T PRK06835 184 ENLLFYGNTGT-GKTFLSNCIAKELLDRGKSVIYRTAD 220 (329)
T ss_pred CcEEEECCCCC-cHHHHHHHHHHHHHHCCCeEEEEEHH
Confidence 34445555565 99999988888888889887655543
No 213
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=31.13 E-value=59 Score=36.65 Aligned_cols=32 Identities=31% Similarity=0.491 Sum_probs=27.6
Q ss_pred cEEEEec----CCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 77 KVIHVSG----TKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 77 ~vIhVTG----TnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
+.|-||| +=|||-|++-|..+|++.|++|-..
T Consensus 2 KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~ 37 (533)
T COG0504 2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQ 37 (533)
T ss_pred eEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEE
Confidence 4677787 7899999999999999999998544
No 214
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=29.48 E-value=84 Score=34.24 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=24.5
Q ss_pred CccEEEEecCC-CCchHHHHHHHHHHHCCCCe
Q 007911 75 ELKVIHVSGTK-GKGSTCTFCEAILRECGFRT 105 (585)
Q Consensus 75 ~l~vIhVTGTn-GKgST~aml~sIL~~~G~kv 105 (585)
.-+++-|-+|+ ||||.|.+|-+-.-..|++.
T Consensus 103 GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~P 134 (415)
T KOG2749|consen 103 GPRVMVVGPTDVGKSTLCRILLNYAVKQGRRP 134 (415)
T ss_pred CCEEEEECCCccchHHHHHHHHHHHHHcCCcc
Confidence 33566677787 99999999998877778774
No 215
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=29.11 E-value=5.3e+02 Score=26.59 Aligned_cols=127 Identities=20% Similarity=0.300 Sum_probs=71.8
Q ss_pred EEEEecCCC-----CchHHHHHHHHHHHCCCC---------------------eEEEcCCccccccceEEEC--CEecCH
Q 007911 78 VIHVSGTKG-----KGSTCTFCEAILRECGFR---------------------TGLFTSPHLIDVRERFRIN--GLDITE 129 (585)
Q Consensus 78 vIhVTGTnG-----KgST~aml~sIL~~~G~k---------------------vGl~tSPhL~~~rERI~in--G~~is~ 129 (585)
.|.|+|++| ..+-+..+.++|+..|++ ..+|..|.-.++.+-+.|| |..+..
T Consensus 3 AvlvagS~~~~NYRh~ad~~~~Y~~l~~~G~~~~~Iil~~~dd~a~~~~Np~~g~i~~~~~~~n~y~~~~iDY~g~~v~~ 82 (256)
T PF01650_consen 3 AVLVAGSNGWFNYRHQADVCHAYQLLKRNGIPDENIILMMYDDIACNPRNPFPGKIFNDPDGTNVYKGVEIDYRGEDVTP 82 (256)
T ss_pred EEEEeccCCceeeeEehHHHHHHHHHHHcCCCCceEEEEecCCccchhhCCCCceEEeCCCcccccCCccccccccccCH
Confidence 466777766 556666677777777643 3466666655655544443 888888
Q ss_pred HHHHHHHHHHH-----HhhhhhccCC--------CCCC-----------CHHHHHHHHHHHHhhhCCCc----EEEEee-
Q 007911 130 DKFLFYFWECW-----HLLRENVTED--------LPMP-----------PLFQFLTVLAFKIFVCEQVD----VAIIEV- 180 (585)
Q Consensus 130 ~~f~~~f~~v~-----~~l~~~~~~~--------~~~p-----------s~Fe~lTllA~~~F~~~~vd----~aVlEv- 180 (585)
+.|.+...=-. ..|. .+.++ -+.| +.-++... |..|. .+-. ++++|.
T Consensus 83 ~~fl~vL~G~~~~~~~kvl~-s~~~D~vfiy~~~HG~~~~l~~~~~~~l~~~~L~~~--L~~m~-~~~~y~~lv~~veaC 158 (256)
T PF01650_consen 83 ENFLNVLTGDKSVPSGKVLN-STENDNVFIYFTGHGGPGFLKFPDGEELTADDLADA--LDKMH-EKKRYKKLVFVVEAC 158 (256)
T ss_pred HHHHHHhcCCCCCCcccccc-CCCCCeEEEEEeccCCCCcccCCCcccccHHHHHHH--HHHHH-hhCCcceEEEEEecc
Confidence 88765431000 0011 01110 1112 22233222 34443 3445 888998
Q ss_pred cCCCCccccccccCCcEEEEcCCCcccccc
Q 007911 181 GLGGEKDSTNVIKEPVVCGVTSLGMDHMEL 210 (585)
Q Consensus 181 G~gGr~D~Tnvi~~P~vavITNIg~DHld~ 210 (585)
-+|+-++. +...|.+.++|+=..|+..|
T Consensus 159 ~SGs~~~~--L~~~~nv~~iTAa~~~e~Sy 186 (256)
T PF01650_consen 159 YSGSFFEG--LLKSPNVYVITAANADESSY 186 (256)
T ss_pred cccchhhc--cCCCCCEEEEecCCcccccc
Confidence 45666666 34468999999999999876
No 216
>PRK13695 putative NTPase; Provisional
Probab=28.62 E-value=66 Score=30.43 Aligned_cols=29 Identities=28% Similarity=0.528 Sum_probs=22.1
Q ss_pred EEEEecCC--CCchHHHHHHHHHHHCCCCeE
Q 007911 78 VIHVSGTK--GKGSTCTFCEAILRECGFRTG 106 (585)
Q Consensus 78 vIhVTGTn--GKgST~aml~sIL~~~G~kvG 106 (585)
.|++||.+ ||||...++..-|...|++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~ 32 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVG 32 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 37788876 688888888887887787754
No 217
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=28.44 E-value=67 Score=25.77 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=22.3
Q ss_pred EEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 78 VIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 78 vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~tS 110 (585)
+|.|+|- .||||.+..++..| .+.++.++..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 3667775 47999999999988 5666665543
No 218
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=28.16 E-value=39 Score=32.89 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=17.2
Q ss_pred EEEEecC--CCCchHHHHHHHHHHHCCCCe
Q 007911 78 VIHVSGT--KGKGSTCTFCEAILRECGFRT 105 (585)
Q Consensus 78 vIhVTGT--nGKgST~aml~sIL~~~G~kv 105 (585)
+|+|||. .||||+|.+++ +.|+++
T Consensus 2 iIglTG~igsGKStv~~~l~----~~G~~v 27 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILA----ELGFPV 27 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHH----HTT-EE
T ss_pred EEEEECCCcCCHHHHHHHHH----HCCCCE
Confidence 6999996 67888877665 478765
No 219
>PRK00889 adenylylsulfate kinase; Provisional
Probab=28.05 E-value=86 Score=29.55 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=25.3
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCeE
Q 007911 77 KVIHVSGT--KGKGSTCTFCEAILRECGFRTG 106 (585)
Q Consensus 77 ~vIhVTGT--nGKgST~aml~sIL~~~G~kvG 106 (585)
.+|.++|. .||||++..|+..|...|.++-
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~ 36 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVE 36 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 58888885 5899999999999998887663
No 220
>CHL00181 cbbX CbbX; Provisional
Probab=27.87 E-value=60 Score=33.96 Aligned_cols=41 Identities=29% Similarity=0.340 Sum_probs=26.2
Q ss_pred HHHHHhCCCCcccCcc--EEEEecCCCCchHHHHHHHHHHHCCC
Q 007911 62 MYLKILGLEDRIAELK--VIHVSGTKGKGSTCTFCEAILRECGF 103 (585)
Q Consensus 62 ~~L~~Lg~~~p~~~l~--vIhVTGTnGKgST~aml~sIL~~~G~ 103 (585)
+..+.+|+..|...++ ++|=+|| |||+++..++.++...|+
T Consensus 46 ~~~~~~g~~~~~~~~~ill~G~pGt-GKT~lAr~la~~~~~~g~ 88 (287)
T CHL00181 46 RLRKNLGLTSSNPGLHMSFTGSPGT-GKTTVALKMADILYKLGY 88 (287)
T ss_pred HHHHHcCCCCCCCCceEEEECCCCC-CHHHHHHHHHHHHHHcCC
Confidence 3344566643333332 2344444 899999999999988775
No 221
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=27.43 E-value=85 Score=30.77 Aligned_cols=31 Identities=13% Similarity=0.118 Sum_probs=26.0
Q ss_pred cEEEEecCCCCchHHHHHHHHHHHCC--CCeEE
Q 007911 77 KVIHVSGTKGKGSTCTFCEAILRECG--FRTGL 107 (585)
Q Consensus 77 ~vIhVTGTnGKgST~aml~sIL~~~G--~kvGl 107 (585)
-.|||==-+|||.|++-+-..||++| +||.+
T Consensus 22 Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~i 54 (178)
T PRK07414 22 GLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLI 54 (178)
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEE
Confidence 47888667999999999999999975 67754
No 222
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=27.06 E-value=55 Score=38.97 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=24.9
Q ss_pred cEEEEecCCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 77 KVIHVSGTKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 77 ~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
-++|.+| -||||+...+..+++..|+++-+.
T Consensus 372 il~G~aG-TGKTtll~~i~~~~~~~g~~V~~~ 402 (744)
T TIGR02768 372 VVVGRAG-TGKSTMLKAAREAWEAAGYRVIGA 402 (744)
T ss_pred EEEecCC-CCHHHHHHHHHHHHHhCCCeEEEE
Confidence 3566677 499999999999999999887544
No 223
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=26.71 E-value=43 Score=36.87 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=28.8
Q ss_pred ccEEEEecC--CCCchHHHHHHHHHH--HCCCCeEEEcCCc
Q 007911 76 LKVIHVSGT--KGKGSTCTFCEAILR--ECGFRTGLFTSPH 112 (585)
Q Consensus 76 l~vIhVTGT--nGKgST~aml~sIL~--~~G~kvGl~tSPh 112 (585)
-++|..-|. -|||||.+=|++.+. .--++||++|+-.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDt 243 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDT 243 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEecc
Confidence 466777665 479999999999988 4457899998765
No 224
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=26.69 E-value=89 Score=30.44 Aligned_cols=30 Identities=33% Similarity=0.436 Sum_probs=24.2
Q ss_pred cEEEEecCCCCchHHHHHHHHHHHC--CCCeE
Q 007911 77 KVIHVSGTKGKGSTCTFCEAILREC--GFRTG 106 (585)
Q Consensus 77 ~vIhVTGTnGKgST~aml~sIL~~~--G~kvG 106 (585)
-.|||=+-+|||.|++.+...++++ |++|.
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ 37 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVG 37 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEE
Confidence 3677777799999999999999986 56664
No 225
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=26.64 E-value=40 Score=34.28 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=20.4
Q ss_pred EEEecCCCCchHHHHHHHHHHHCCCCeEE
Q 007911 79 IHVSGTKGKGSTCTFCEAILRECGFRTGL 107 (585)
Q Consensus 79 IhVTGTnGKgST~aml~sIL~~~G~kvGl 107 (585)
||=+| .||||-|+-+.+.+...|.++.+
T Consensus 2 iGpaG-SGKTT~~~~~~~~~~~~~~~~~~ 29 (238)
T PF03029_consen 2 IGPAG-SGKTTFCKGLSEWLESNGRDVYI 29 (238)
T ss_dssp EESTT-SSHHHHHHHHHHHHTTT-S-EEE
T ss_pred CCCCC-CCHHHHHHHHHHHHHhccCCceE
Confidence 33344 49999999999999999987643
No 226
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=26.62 E-value=2.2e+02 Score=32.13 Aligned_cols=84 Identities=17% Similarity=0.300 Sum_probs=45.5
Q ss_pred CcEEEEeecCCCCcccccccc--------CCcEEEE-cCCCcccccccC------CCHHHHHHHHhc----------ccC
Q 007911 173 VDVAIIEVGLGGEKDSTNVIK--------EPVVCGV-TSLGMDHMELLG------NTLNDIAFHKAG----------IFK 227 (585)
Q Consensus 173 vd~aVlEvG~gGr~D~Tnvi~--------~P~vavI-TNIg~DHld~lG------~Tle~IA~~Kag----------I~k 227 (585)
.||+|-|+|-|-.+-+-.++. .|+.+|| ..| --+.+|| -+-|++..-|.| |-+
T Consensus 290 ~dy~VTEAGFgaDlGaEKF~dIK~r~~gl~PdavVlVATv--RALK~hGG~~~~~l~~Env~avk~G~aNL~~Hi~Nikk 367 (554)
T COG2759 290 ADYVVTEAGFGADLGAEKFFDIKCRSSGLKPDAVVLVATV--RALKMHGGVPKEDLTEENVDAVKKGFANLLKHIENIKK 367 (554)
T ss_pred cCeEEEecccccccchhhhcceeccccCCCCCeEEEeeeh--HHHHHcCCCChHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 499999999883332222211 4665443 333 2344454 133333333444 334
Q ss_pred CCCcEEee-----CCchHHHHHHHHHHHhcCccEEE
Q 007911 228 PQIPAFTV-----PQLSEAMSVLQDRALELMVPLEV 258 (585)
Q Consensus 228 ~g~~aV~~-----~qd~~~~~vl~~~a~~~~~~l~~ 258 (585)
-|.|+|+. .|.++-...+++.|.+.+.+...
T Consensus 368 fgvp~VVAIN~F~tDt~~Ei~~i~~~~~~~gv~~~l 403 (554)
T COG2759 368 FGVPVVVAINKFPTDTEAEIAAIEKLCEEHGVEVAL 403 (554)
T ss_pred cCCCeEEEeccCCCCCHHHHHHHHHHHHHcCCceee
Confidence 67787653 23444456778888888866554
No 227
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=26.45 E-value=83 Score=36.04 Aligned_cols=41 Identities=24% Similarity=0.181 Sum_probs=29.1
Q ss_pred HHHHhCCCCcccCccEEEEecCC------CCchHHHHHHHHHHHCCCCeE
Q 007911 63 YLKILGLEDRIAELKVIHVSGTK------GKGSTCTFCEAILRECGFRTG 106 (585)
Q Consensus 63 ~L~~Lg~~~p~~~l~vIhVTGTn------GKgST~aml~sIL~~~G~kvG 106 (585)
+++++. ...+-+.|-||+.| |||||+-=|...|.+.|+++.
T Consensus 44 ~~~~~~---~~~~gklilVTaitPTp~GEGKtTttiGL~~al~~lg~~~~ 90 (557)
T PF01268_consen 44 VLERLK---DKPDGKLILVTAITPTPAGEGKTTTTIGLAQALNRLGKKAI 90 (557)
T ss_dssp HHHHTT---TS---EEEEEEESS--TTS-SHHHHHHHHHHHHHHTT--EE
T ss_pred HHhhcc---ccCCCcEEEEEecCCCCCCCCceeHHHHHHHHHHhcCCceE
Confidence 445553 22355889999987 999999999999999998863
No 228
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=26.40 E-value=94 Score=29.80 Aligned_cols=30 Identities=37% Similarity=0.574 Sum_probs=24.7
Q ss_pred EEEEecCCCCchHHHHHHHHHHHC--CCCeEE
Q 007911 78 VIHVSGTKGKGSTCTFCEAILREC--GFRTGL 107 (585)
Q Consensus 78 vIhVTGTnGKgST~aml~sIL~~~--G~kvGl 107 (585)
.|||=+-+|||.|++.+...++++ |++|.+
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~ 35 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGV 35 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 688866779999999999999986 566654
No 229
>PLN02759 Formate--tetrahydrofolate ligase
Probab=26.36 E-value=3e+02 Score=32.13 Aligned_cols=33 Identities=6% Similarity=0.057 Sum_probs=19.7
Q ss_pred CCCCcEEee-----CCchHHHHHHHHHHHhcCc-cEEEe
Q 007911 227 KPQIPAFTV-----PQLSEAMSVLQDRALELMV-PLEVA 259 (585)
Q Consensus 227 k~g~~aV~~-----~qd~~~~~vl~~~a~~~~~-~l~~~ 259 (585)
+-|.|+|+. .|.++-.+.+++.|.+.|+ +....
T Consensus 448 ~fg~pvVVaiN~F~~Dt~~Ei~~v~~~~~~~ga~~~~~~ 486 (637)
T PLN02759 448 SYGVNVVVAINMFATDTEAELEAVRQAALAAGAFDAVLC 486 (637)
T ss_pred HcCCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEEe
Confidence 356676653 2444556677788877774 55443
No 230
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=25.55 E-value=83 Score=35.95 Aligned_cols=32 Identities=31% Similarity=0.533 Sum_probs=27.8
Q ss_pred cEEEEec----CCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 77 KVIHVSG----TKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 77 ~vIhVTG----TnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
+.|-||| .=|||.|++-+..+|++.|++|-..
T Consensus 2 k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~ 37 (525)
T TIGR00337 2 KYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTII 37 (525)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEE
Confidence 5688888 5699999999999999999998544
No 231
>PRK08181 transposase; Validated
Probab=25.52 E-value=50 Score=34.34 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=26.1
Q ss_pred cCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 74 AELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 74 ~~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tS 110 (585)
..+-++|=+|| |||-.+.-+..-+...|++|..++.
T Consensus 107 ~nlll~Gp~Gt-GKTHLa~Aia~~a~~~g~~v~f~~~ 142 (269)
T PRK08181 107 ANLLLFGPPGG-GKSHLAAAIGLALIENGWRVLFTRT 142 (269)
T ss_pred ceEEEEecCCC-cHHHHHHHHHHHHHHcCCceeeeeH
Confidence 34555666666 8998888888877778998855544
No 232
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=25.35 E-value=27 Score=33.32 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.3
Q ss_pred CCCchHHHHHHHHHHHCCCCeEE
Q 007911 85 KGKGSTCTFCEAILRECGFRTGL 107 (585)
Q Consensus 85 nGKgST~aml~sIL~~~G~kvGl 107 (585)
.||||.+.+|..-|+..|+++-+
T Consensus 7 sGKtT~~~~L~~~l~~~~~~~~~ 29 (186)
T PF02223_consen 7 SGKTTQIRLLAEALKEKGYKVII 29 (186)
T ss_dssp SSHHHHHHHHHHHHHHTTEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCcccc
Confidence 59999999999999999988433
No 233
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=25.25 E-value=2.3e+02 Score=28.28 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=17.0
Q ss_pred cEEEEecCC--CCchHHHHHHHHH
Q 007911 77 KVIHVSGTK--GKGSTCTFCEAIL 98 (585)
Q Consensus 77 ~vIhVTGTn--GKgST~aml~sIL 98 (585)
.+|+|+|.. ||||++.+|+.-|
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~ 26 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKL 26 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999865 6888888887654
No 234
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=25.15 E-value=94 Score=29.72 Aligned_cols=32 Identities=28% Similarity=0.302 Sum_probs=26.1
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCeEEE
Q 007911 77 KVIHVSGT--KGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 77 ~vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~ 108 (585)
-+|-+||. .||||.+..|+.-|.+.|+++-++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~L 36 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLL 36 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 47888886 479999999999999999988544
No 235
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=24.96 E-value=64 Score=33.21 Aligned_cols=28 Identities=21% Similarity=0.471 Sum_probs=22.9
Q ss_pred EEEEec--CCCCchHHHH-HHHHHHHCCCCe
Q 007911 78 VIHVSG--TKGKGSTCTF-CEAILRECGFRT 105 (585)
Q Consensus 78 vIhVTG--TnGKgST~am-l~sIL~~~G~kv 105 (585)
.|+||| -.||||.+++ +..++...|++|
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~V 32 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNV 32 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceE
Confidence 577876 5789999999 777888777887
No 236
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=24.66 E-value=38 Score=35.13 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=20.5
Q ss_pred EEEEecCC--CCchHHHHHHHHHHHCC
Q 007911 78 VIHVSGTK--GKGSTCTFCEAILRECG 102 (585)
Q Consensus 78 vIhVTGTn--GKgST~aml~sIL~~~G 102 (585)
+|+|+|.+ ||||.+.+|..+|...|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~ 27 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDL 27 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCc
Confidence 57888875 79999999999997654
No 237
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=24.56 E-value=94 Score=35.70 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=27.5
Q ss_pred CccEEEEec------CCCCchHHHHHHHHHHHCCCCe
Q 007911 75 ELKVIHVSG------TKGKGSTCTFCEAILRECGFRT 105 (585)
Q Consensus 75 ~l~vIhVTG------TnGKgST~aml~sIL~~~G~kv 105 (585)
.-++|.||. --|||||+.=|+..|.+.|.++
T Consensus 53 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~ 89 (578)
T PRK13506 53 KGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKV 89 (578)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCce
Confidence 458999999 3489999999999999999986
No 238
>PRK13768 GTPase; Provisional
Probab=24.43 E-value=88 Score=31.94 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=25.0
Q ss_pred EEEEec--CCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 78 VIHVSG--TKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 78 vIhVTG--TnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
+|.|+| --||||++.-+...|...|+++.++
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i 36 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIV 36 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEE
Confidence 555655 4689999999999999999988654
No 239
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=24.24 E-value=1.5e+02 Score=28.02 Aligned_cols=77 Identities=16% Similarity=0.329 Sum_probs=48.3
Q ss_pred EEEEecCCCHHHHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhccccccccccccccccCccEEEEEe---cC
Q 007911 354 IFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFN---CM 430 (585)
Q Consensus 354 ~vilDgAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg---~~ 430 (585)
.+=+|+++.+.......++++..... +.++ . ++ |+++|- ..
T Consensus 18 L~~i~~~~~~k~~a~~~E~~~~l~~~---------------------lErq-------------f-KG-Rv~l~P~~~Y~ 61 (142)
T PF10673_consen 18 LIPIDFGEDMKEAASQGEFLRLLADE---------------------LERQ-------------F-KG-RVLLFPAFTYL 61 (142)
T ss_pred ccccCccccHHHHHHHHHHHHHHHHH---------------------HHHh-------------c-Cc-eEEecCCeeee
Confidence 45578899999988888888766421 1100 1 23 455543 33
Q ss_pred CCCChhhhhHHHHHHhhhc-CCCccEEEEeCCCcccc
Q 007911 431 EARHPQVLLPRLVSTCASS-GTHFSKALFVPSVSTYS 466 (585)
Q Consensus 431 ~~Rd~~~ll~~l~~~~~~~-~~~fd~~if~~~~~~~~ 466 (585)
...+.+.+...|.+.+... ...|.|++|++..+.|+
T Consensus 62 ~~~~~~~~~~~L~~w~~~l~~~GFkhV~~lT~D~~Wk 98 (142)
T PF10673_consen 62 KEEDEEELVERLNDWCEELKESGFKHVFYLTSDSEWK 98 (142)
T ss_pred cccchhHHHHHHHHHHHHHHhcCCcEEEEEecCcccc
Confidence 4556665555565544332 23599999999887887
No 240
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=23.99 E-value=1.1e+02 Score=35.20 Aligned_cols=41 Identities=24% Similarity=0.147 Sum_probs=32.3
Q ss_pred HHHHhCCCCcccCccEEEEecCC------CCchHHHHHHHHHHHCCCCeE
Q 007911 63 YLKILGLEDRIAELKVIHVSGTK------GKGSTCTFCEAILRECGFRTG 106 (585)
Q Consensus 63 ~L~~Lg~~~p~~~l~vIhVTGTn------GKgST~aml~sIL~~~G~kvG 106 (585)
+++++.. . .+-+.|-||+.| |||||+-=|...|.+.|+++.
T Consensus 53 ~l~~~~~-~--~~gklIlVTaitPTP~GEGKtTttIGL~~aL~~lgk~~~ 99 (587)
T PRK13507 53 VLDRLKD-R--PDGKYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKVS 99 (587)
T ss_pred HHHhhcc-C--CCCeEEEEeccCCCCCCCCccchhhhHHHHHHhhcCceE
Confidence 4555542 2 245789999976 999999999999999998863
No 241
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=23.95 E-value=70 Score=31.57 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=17.7
Q ss_pred cEEEEecCCCCchHHHH-HHHHHHHCCCCeEEE
Q 007911 77 KVIHVSGTKGKGSTCTF-CEAILRECGFRTGLF 108 (585)
Q Consensus 77 ~vIhVTGTnGKgST~am-l~sIL~~~G~kvGl~ 108 (585)
-|+|-||| |||+|++. ++++++..|.++-+|
T Consensus 27 ~I~G~TGs-GKS~~~~~ll~~l~~~~~~~~ii~ 58 (229)
T PF01935_consen 27 AIFGTTGS-GKSNTVKVLLEELLKKKGAKVIIF 58 (229)
T ss_pred EEECCCCC-CHHHHHHHHHHHHHhcCCCCEEEE
Confidence 35555554 78766654 455554667666443
No 242
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=23.92 E-value=1e+02 Score=30.50 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=26.1
Q ss_pred cEEEEecCCCCchHHHHHHHHHHHCC--CCeEE
Q 007911 77 KVIHVSGTKGKGSTCTFCEAILRECG--FRTGL 107 (585)
Q Consensus 77 ~vIhVTGTnGKgST~aml~sIL~~~G--~kvGl 107 (585)
-.|+|=+-+|||.|++.+...++++| ++|.+
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~i 55 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGV 55 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEE
Confidence 47999999999999999999999864 56543
No 243
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=23.80 E-value=4.2e+02 Score=31.39 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.6
Q ss_pred EEEEecCC--CCchHHHHHHHHH
Q 007911 78 VIHVSGTK--GKGSTCTFCEAIL 98 (585)
Q Consensus 78 vIhVTGTn--GKgST~aml~sIL 98 (585)
+|+|+|+. ||||++..|+..|
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l 25 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYL 25 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999986 6999999999887
No 244
>PRK05480 uridine/cytidine kinase; Provisional
Probab=23.56 E-value=97 Score=30.16 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.2
Q ss_pred CccEEEEecC--CCCchHHHHHHHHH
Q 007911 75 ELKVIHVSGT--KGKGSTCTFCEAIL 98 (585)
Q Consensus 75 ~l~vIhVTGT--nGKgST~aml~sIL 98 (585)
+..+|+|+|- .||||++..|...|
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4468999996 58999999999888
No 245
>COG5623 CLP1 Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
Probab=23.43 E-value=1.4e+02 Score=31.91 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=31.4
Q ss_pred HHHHHHHHhCCCCcccCccEEEEec--CCCCchHHHHHHHHHHHCCCCe
Q 007911 59 RMSMYLKILGLEDRIAELKVIHVSG--TKGKGSTCTFCEAILRECGFRT 105 (585)
Q Consensus 59 ~~~~~L~~Lg~~~p~~~l~vIhVTG--TnGKgST~aml~sIL~~~G~kv 105 (585)
++.-+|+.++..+. .+.|.+.|-| .|||||.|..|.+-.-..|++.
T Consensus 83 Nlhf~lek~rm~n~-e~gp~v~vvGgsq~Gkts~~~tL~syalk~~~~p 130 (424)
T COG5623 83 NLHFFLEKRRMFNY-EKGPTVMVVGGSQNGKTSFCFTLISYALKLGKKP 130 (424)
T ss_pred hHHHHHHhhccccc-ccCCEEEEECCCcCCceeHHHHHHHHHHHhcCCc
Confidence 44555666653222 2566777777 6999999998888766668775
No 246
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=23.23 E-value=44 Score=34.95 Aligned_cols=40 Identities=23% Similarity=0.378 Sum_probs=29.1
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHH
Q 007911 77 KVIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDK 131 (585)
Q Consensus 77 ~vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~ 131 (585)
.++.+-|+ .|||||-.||..++... |. .|+|||++|++.+
T Consensus 28 ef~vliGpSGsGKTTtLkMINrLiept--------~G-------~I~i~g~~i~~~d 69 (309)
T COG1125 28 EFLVLIGPSGSGKTTTLKMINRLIEPT--------SG-------EILIDGEDISDLD 69 (309)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCC--------Cc-------eEEECCeecccCC
Confidence 35556665 47999999999888742 22 2899999998653
No 247
>PRK05380 pyrG CTP synthetase; Validated
Probab=22.87 E-value=1e+02 Score=35.27 Aligned_cols=33 Identities=30% Similarity=0.464 Sum_probs=28.5
Q ss_pred ccEEEEec----CCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 76 LKVIHVSG----TKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 76 l~vIhVTG----TnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
.+.|-||| +=|||-|++-+..+|++.|++|-..
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~~ 38 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQ 38 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEE
Confidence 36788888 6799999999999999999998543
No 248
>PTZ00202 tuzin; Provisional
Probab=22.86 E-value=3.1e+02 Score=31.24 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=29.6
Q ss_pred CChHHHHHHHHHhCCCCcccCccEEEEecCCC--CchHHHHHHHHHHHCCCCeEEEcCCc
Q 007911 55 GKLQRMSMYLKILGLEDRIAELKVIHVSGTKG--KGSTCTFCEAILRECGFRTGLFTSPH 112 (585)
Q Consensus 55 ~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnG--KgST~aml~sIL~~~G~kvGl~tSPh 112 (585)
..+..++.+|..+..+.| +++.|||.+| |||.+..+. +..+ .+.+|-.|+
T Consensus 269 aEla~Lr~VL~~~d~~~p----rivvLtG~~G~GKTTLlR~~~---~~l~-~~qL~vNpr 320 (550)
T PTZ00202 269 AEESWVRQVLRRLDTAHP----RIVVFTGFRGCGKSSLCRSAV---RKEG-MPAVFVDVR 320 (550)
T ss_pred HHHHHHHHHHhccCCCCc----eEEEEECCCCCCHHHHHHHHH---hcCC-ceEEEECCC
Confidence 346666666665543222 4899999885 555555444 3334 566666554
No 249
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=22.67 E-value=1.7e+02 Score=31.26 Aligned_cols=88 Identities=18% Similarity=0.248 Sum_probs=47.5
Q ss_pred ccEEEEec--CCCCchHHHHHHHHHHH-CCCCeEEEcCCccccccceEEECC-EecCHHHHHHHHHHHHHhhhhhccCCC
Q 007911 76 LKVIHVSG--TKGKGSTCTFCEAILRE-CGFRTGLFTSPHLIDVRERFRING-LDITEDKFLFYFWECWHLLRENVTEDL 151 (585)
Q Consensus 76 l~vIhVTG--TnGKgST~aml~sIL~~-~G~kvGl~tSPhL~~~rERI~inG-~~is~~~f~~~f~~v~~~l~~~~~~~~ 151 (585)
+|+.-||| =.||||+ |.++|++ .|.|++++-. +|.| |.||| ..+.... +.+.+.++..+
T Consensus 1 ipVtvitGFLGsGKTTl---L~~lL~~~~g~kiAVIVN----EfGE-vgID~~~~l~~~~---------e~~~El~nGCI 63 (323)
T COG0523 1 IPVTVITGFLGSGKTTL---LNHLLANRDGKKIAVIVN----EFGE-VGIDGGALLSDTG---------EEVVELTNGCI 63 (323)
T ss_pred CCEEEEeecCCCCHHHH---HHHHHhccCCCcEEEEEe----cCcc-ccccCCCccccCC---------ccEEEeCCceE
Confidence 47888899 4677664 4566664 4788887532 2344 77774 5444332 11222232211
Q ss_pred CC---CCHHHHHHHHHHHHhhhCCCcEEEEee-cCC
Q 007911 152 PM---PPLFQFLTVLAFKIFVCEQVDVAIIEV-GLG 183 (585)
Q Consensus 152 ~~---ps~Fe~lTllA~~~F~~~~vd~aVlEv-G~g 183 (585)
.- -..... +..++. .+.++|++|||. |++
T Consensus 64 CCT~r~dl~~~--~~~L~~-~~~~~D~ivIEtTGlA 96 (323)
T COG0523 64 CCTVRDDLLPA--LERLLR-RRDRPDRLVIETTGLA 96 (323)
T ss_pred EEeccchhHHH--HHHHHh-ccCCCCEEEEeCCCCC
Confidence 10 012222 122333 577899999998 666
No 250
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=22.63 E-value=3e+02 Score=31.35 Aligned_cols=52 Identities=27% Similarity=0.506 Sum_probs=39.9
Q ss_pred cEEEEec--CCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhh
Q 007911 77 KVIHVSG--TKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLL 143 (585)
Q Consensus 77 ~vIhVTG--TnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l 143 (585)
-+|.+-| +.|||++...|..-|...|++|-.|+.|. +++.---++|..|..+
T Consensus 41 vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~---------------~eE~~~~flwRfw~~l 94 (493)
T TIGR03708 41 VIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPS---------------DEERERPPMWRFWRRL 94 (493)
T ss_pred EEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCC---------------HHHhcCcHHHHHHHhC
Confidence 4677788 78999999999999999999998887775 2333234567777766
No 251
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=22.43 E-value=61 Score=32.20 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=20.0
Q ss_pred ccEEEEecC--CCCchHHHHHHHHHHHCCCCe
Q 007911 76 LKVIHVSGT--KGKGSTCTFCEAILRECGFRT 105 (585)
Q Consensus 76 l~vIhVTGT--nGKgST~aml~sIL~~~G~kv 105 (585)
..+|+|||. .||||++.+++. .|+++
T Consensus 2 ~~iIglTG~igsGKStva~~~~~----~G~~v 29 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE----LGFPV 29 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH----cCCeE
Confidence 468999995 789998876655 67765
No 252
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=22.37 E-value=7e+02 Score=24.73 Aligned_cols=95 Identities=15% Similarity=0.110 Sum_probs=49.2
Q ss_pred chHHHHHHHHHHHCCCCeEEEcCCccccccce---------EEECCEecCHHHHHHHHHHHHHhhhh-hccCCCCCCCHH
Q 007911 88 GSTCTFCEAILRECGFRTGLFTSPHLIDVRER---------FRINGLDITEDKFLFYFWECWHLLRE-NVTEDLPMPPLF 157 (585)
Q Consensus 88 gST~aml~sIL~~~G~kvGl~tSPhL~~~rER---------I~inG~~is~~~f~~~f~~v~~~l~~-~~~~~~~~ps~F 157 (585)
|.++.-++.+.+..|+++-+|..+.....+.+ +.+++. . +...+...++.+.... ...+....|...
T Consensus 59 GN~g~alA~~a~~~g~~~~v~~p~~~~~~~~~~~~~~Ga~v~~~~~~-~--~~~~~~a~~~~~~~~~~~~~~~~~n~~~~ 135 (244)
T cd00640 59 GNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRALGAEVVLVPGD-F--DDAIALAKELAEEDPGAYYVNQFDNPANI 135 (244)
T ss_pred cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC-H--HHHHHHHHHHHHhCCCCEecCCCCCHHHH
Confidence 78888899999999999988876543222211 333332 0 1111111111111000 000111233344
Q ss_pred HHHHHHHHHHhhhC---CCcEEEEeecCCCC
Q 007911 158 QFLTVLAFKIFVCE---QVDVAIIEVGLGGE 185 (585)
Q Consensus 158 e~lTllA~~~F~~~---~vd~aVlEvG~gGr 185 (585)
+-...+++.++.+. .+|++|+=+|.||-
T Consensus 136 ~g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~ 166 (244)
T cd00640 136 AGQGTIGLEILEQLGGQKPDAVVVPVGGGGN 166 (244)
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEecCccHH
Confidence 44445556655553 37999999999853
No 253
>PRK13973 thymidylate kinase; Provisional
Probab=22.34 E-value=78 Score=31.24 Aligned_cols=36 Identities=22% Similarity=0.394 Sum_probs=28.7
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 007911 77 KVIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTSPH 112 (585)
Q Consensus 77 ~vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~tSPh 112 (585)
++|.|-|. .||||.+.+|+.-|...|+++-...=|.
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~ 41 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPG 41 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 46777775 5899999999999999999885554453
No 254
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=22.15 E-value=77 Score=30.99 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=20.5
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHH
Q 007911 76 LKVIHVSGTK--GKGSTCTFCEAILRE 100 (585)
Q Consensus 76 l~vIhVTGTn--GKgST~aml~sIL~~ 100 (585)
-.+|+|+|-+ ||||.+..|...|..
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3689999964 899999999888864
No 255
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=22.13 E-value=4.1e+02 Score=22.55 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=17.6
Q ss_pred EEEEecCCCHHHHHHHHHHHHhhh
Q 007911 354 IFYLDGAHTAESMEACAKWFSSVV 377 (585)
Q Consensus 354 ~vilDgAHnp~sl~a~l~~~~~~~ 377 (585)
.+.++|-=|++.++.+...+....
T Consensus 4 ~v~~~g~~t~ed~~~~~~~~~~~~ 27 (109)
T PF11964_consen 4 AVRVSGKLTEEDYKELLPALEELI 27 (109)
T ss_dssp EEEEEEEE-HHHHHHHHHHHHHHH
T ss_pred EEEEeeeeCHHHHHHHHHHHHHHH
Confidence 456777778999999888777764
No 256
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=21.98 E-value=90 Score=33.71 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=28.7
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 77 KVIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 77 ~vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~tS 110 (585)
-+|+|+|- .||||.+..|...|+.. ++|+.+..
T Consensus 6 ~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~ 40 (369)
T PRK14490 6 FEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYKH 40 (369)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEEe
Confidence 58999995 48999999999999998 99999874
No 257
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=21.93 E-value=75 Score=39.13 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=23.2
Q ss_pred EEEEecCCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 78 VIHVSGTKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 78 vIhVTGTnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
+.|-+|| ||||+...+..++++.|++|...
T Consensus 367 v~G~AGT-GKTT~l~~~~~~~e~~G~~V~~~ 396 (988)
T PRK13889 367 VVGYAGT-GKSAMLGVAREAWEAAGYEVRGA 396 (988)
T ss_pred EEeCCCC-CHHHHHHHHHHHHHHcCCeEEEe
Confidence 4455554 89999988889999999987654
No 258
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.83 E-value=53 Score=31.27 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=25.5
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecC
Q 007911 75 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDIT 128 (585)
Q Consensus 75 ~l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is 128 (585)
+-.+++|.|-| ||||...+|..++... .-+|.++|.+++
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---------------~G~i~~~g~~~~ 65 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEEPD---------------SGSILIDGEDLT 65 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCC---------------ceEEEECCEEcc
Confidence 34689999998 6777666666544321 123778888765
No 259
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=21.81 E-value=1.4e+02 Score=34.35 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=29.6
Q ss_pred CccEEEEecC------CCCchHHHHHHHHHHHCCCCeEEE
Q 007911 75 ELKVIHVSGT------KGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 75 ~l~vIhVTGT------nGKgST~aml~sIL~~~G~kvGl~ 108 (585)
..++|.||.+ -|||||+.=|+..|.+.|.||.+.
T Consensus 54 ~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~~Gkkvlli 93 (557)
T PRK13505 54 DGKLILVTAINPTPAGEGKSTVTVGLGDALNKIGKKTVIA 93 (557)
T ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4589999993 389999999999999999998765
No 260
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=21.78 E-value=1.2e+02 Score=33.27 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=26.3
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHH-HCC-CCeEEEcCC
Q 007911 76 LKVIHVSGTK--GKGSTCTFCEAILR-ECG-FRTGLFTSP 111 (585)
Q Consensus 76 l~vIhVTGTn--GKgST~aml~sIL~-~~G-~kvGl~tSP 111 (585)
-.+|.+.|-+ |||||++.|+.-+. ..| .++++++.-
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D 176 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTD 176 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence 3577777766 69999999988654 446 588887753
No 261
>PRK05541 adenylylsulfate kinase; Provisional
Probab=21.60 E-value=1.4e+02 Score=28.09 Aligned_cols=32 Identities=19% Similarity=0.077 Sum_probs=24.5
Q ss_pred cCccEEEEecC--CCCchHHHHHHHHHHHCCCCe
Q 007911 74 AELKVIHVSGT--KGKGSTCTFCEAILRECGFRT 105 (585)
Q Consensus 74 ~~l~vIhVTGT--nGKgST~aml~sIL~~~G~kv 105 (585)
.+-.+|.++|- .||||.+..+..-|...+..+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~ 38 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNV 38 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 34457888885 479999999999998766554
No 262
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=21.50 E-value=57 Score=29.09 Aligned_cols=38 Identities=26% Similarity=0.517 Sum_probs=24.1
Q ss_pred cEEEEecCCC--CchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCH
Q 007911 77 KVIHVSGTKG--KGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITE 129 (585)
Q Consensus 77 ~vIhVTGTnG--KgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~ 129 (585)
.+++|.|-|| |||...+|...+.. ..| +|.+||.++..
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~~---~~G------------~i~~~~~~~~~ 51 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLPP---DSG------------SILINGKDISD 51 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSHE---SEE------------EEEETTEEGTT
T ss_pred CEEEEEccCCCccccceeeecccccc---ccc------------ccccccccccc
Confidence 5899999995 55555444433332 122 27889998876
No 263
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=21.42 E-value=86 Score=35.93 Aligned_cols=85 Identities=18% Similarity=0.332 Sum_probs=45.5
Q ss_pred CcEEEEeecCCCCccc----------cccccCCcEEEEc-CC--------------CcccccccCCCHHHHHHHHhcccC
Q 007911 173 VDVAIIEVGLGGEKDS----------TNVIKEPVVCGVT-SL--------------GMDHMELLGNTLNDIAFHKAGIFK 227 (585)
Q Consensus 173 vd~aVlEvG~gGr~D~----------Tnvi~~P~vavIT-NI--------------g~DHld~lG~Tle~IA~~KagI~k 227 (585)
.||+|-|+|-|-.+-+ ..+ .|+++|+. .| ..+.++.+-.-+++..+|=..|=+
T Consensus 292 ~dyvvTEAGFGaDlGaEKF~dIkcr~~gl--~P~~~VlVaTvRALK~HGG~~~~~l~~eNl~al~~G~~NL~rHIeNik~ 369 (557)
T PF01268_consen 292 ADYVVTEAGFGADLGAEKFFDIKCRKSGL--KPDAVVLVATVRALKMHGGVAKDDLNEENLEALEKGFANLERHIENIKK 369 (557)
T ss_dssp SSEEEEEBSSSTTTHHHHHHHTHHHHHT-----SEEEEEEEHHHHHHHTT--GGGTTS--HHHHHHHHHHHHHHHHHHHC
T ss_pred cceeecccccccccChhhhcCccchhccc--CcceEEEeeechHHHhhcCCCccccCccCHHHHHHHHHHHHHHHHHHHh
Confidence 5899999998843322 233 57776553 22 222222222224444455444555
Q ss_pred CCCcEEee-----CCchHHHHHHHHHHHhcCccEEEe
Q 007911 228 PQIPAFTV-----PQLSEAMSVLQDRALELMVPLEVA 259 (585)
Q Consensus 228 ~g~~aV~~-----~qd~~~~~vl~~~a~~~~~~l~~~ 259 (585)
-|.|+|+. .|.++-.+.+++.|++.|++....
T Consensus 370 fGvpvVVAIN~F~tDT~aEi~~I~~~~~~~Gv~~avs 406 (557)
T PF01268_consen 370 FGVPVVVAINRFPTDTDAEIELIRELCEELGVRAAVS 406 (557)
T ss_dssp TT--EEEEEE--TTS-HHHHHHHHHHCCCCCEEEEEC
T ss_pred cCCCeEEEecCCCCCCHHHHHHHHHHHHhCCCCEEEe
Confidence 78887753 344556778888998888885443
No 264
>PLN02327 CTP synthase
Probab=21.33 E-value=1.1e+02 Score=35.30 Aligned_cols=32 Identities=34% Similarity=0.615 Sum_probs=27.7
Q ss_pred cEEEEec----CCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 77 KVIHVSG----TKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 77 ~vIhVTG----TnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
+.|-||| +=|||.|++-|..+|++.|++|-..
T Consensus 2 k~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~ 37 (557)
T PLN02327 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSI 37 (557)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeee
Confidence 5788888 5699999999999999999998543
No 265
>PTZ00301 uridine kinase; Provisional
Probab=21.31 E-value=82 Score=31.41 Aligned_cols=27 Identities=41% Similarity=0.537 Sum_probs=20.5
Q ss_pred ccEEEEec--CCCCchHHHHHHHHH-HHCC
Q 007911 76 LKVIHVSG--TKGKGSTCTFCEAIL-RECG 102 (585)
Q Consensus 76 l~vIhVTG--TnGKgST~aml~sIL-~~~G 102 (585)
..+|+|+| -.||||.|..|..-| ...|
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~ 32 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCG 32 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcC
Confidence 46899999 578999998887655 4444
No 266
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=21.27 E-value=1.1e+02 Score=31.80 Aligned_cols=29 Identities=34% Similarity=0.322 Sum_probs=21.6
Q ss_pred cEEEEe---cCCCCchHHHHHHHHHHHCCCCe
Q 007911 77 KVIHVS---GTKGKGSTCTFCEAILRECGFRT 105 (585)
Q Consensus 77 ~vIhVT---GTnGKgST~aml~sIL~~~G~kv 105 (585)
++|+|+ |--||||+++-+.+++.+.+.++
T Consensus 3 ~~Iav~SgKGGvGKTtitanlga~~~~~~~k~ 34 (262)
T COG0455 3 KVIAVVSGKGGVGKTTITANLGAALAALGGKV 34 (262)
T ss_pred EEEEEEecCCCccHHHHHHhHHHHHHhhCCCe
Confidence 577777 67799999999966665555444
No 267
>PLN02759 Formate--tetrahydrofolate ligase
Probab=21.26 E-value=1.4e+02 Score=34.60 Aligned_cols=31 Identities=19% Similarity=0.112 Sum_probs=27.3
Q ss_pred CccEEEEecCC------CCchHHHHHHHHHHH-CCCCe
Q 007911 75 ELKVIHVSGTK------GKGSTCTFCEAILRE-CGFRT 105 (585)
Q Consensus 75 ~l~vIhVTGTn------GKgST~aml~sIL~~-~G~kv 105 (585)
+-+.|-||+.| |||||+-=|.+.|.+ .|+++
T Consensus 68 ~gklIlVTaitPTP~GEGKTTttIGL~~aL~~~lgk~~ 105 (637)
T PLN02759 68 DGYYVVVAGITPTPLGEGKSTTTIGLCQALGAYLDKKV 105 (637)
T ss_pred CCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHhCCee
Confidence 35789999976 999999999999997 89876
No 268
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=20.96 E-value=71 Score=31.02 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=15.7
Q ss_pred EEEEecCCCCchHHHHHHHHHH
Q 007911 78 VIHVSGTKGKGSTCTFCEAILR 99 (585)
Q Consensus 78 vIhVTGTnGKgST~aml~sIL~ 99 (585)
+++|+|+ ||+|+..++.+-|.
T Consensus 17 vmGvsGs-GKSTigk~L~~~l~ 37 (191)
T KOG3354|consen 17 VMGVSGS-GKSTIGKALSEELG 37 (191)
T ss_pred EEecCCC-ChhhHHHHHHHHhC
Confidence 4555554 89999999988775
No 269
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=20.86 E-value=1e+02 Score=28.11 Aligned_cols=30 Identities=23% Similarity=0.175 Sum_probs=24.9
Q ss_pred EEEecCCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 79 IHVSGTKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 79 IhVTGTnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
....|--|||+++..++..|...|.+|.++
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~v 34 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLL 34 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 444567799999999999999999988653
No 270
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=20.63 E-value=59 Score=32.28 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=17.8
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHH
Q 007911 75 ELKVIHVSGTK--GKGSTCTFCEAILR 99 (585)
Q Consensus 75 ~l~vIhVTGTn--GKgST~aml~sIL~ 99 (585)
+-.+++|.|-| ||||...+|..++.
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34689999998 57777766665553
No 271
>PRK08939 primosomal protein DnaI; Reviewed
Probab=20.50 E-value=1.2e+02 Score=32.04 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=25.3
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcCC
Q 007911 77 KVIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTSP 111 (585)
Q Consensus 77 ~vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~tSP 111 (585)
+-+-+.|. .|||..+..+..-|...|++|.+++.|
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 34555553 388888888888888889988766655
No 272
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=20.19 E-value=1.6e+02 Score=28.53 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=24.8
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCe
Q 007911 77 KVIHVSGT--KGKGSTCTFCEAILRECGFRT 105 (585)
Q Consensus 77 ~vIhVTGT--nGKgST~aml~sIL~~~G~kv 105 (585)
-+|-|||- .||+|.+-.|++.|.+.|.-+
T Consensus 32 cviWiTGLSgSGKStlACaL~q~L~qrgkl~ 62 (207)
T KOG0635|consen 32 CVIWITGLSGSGKSTLACALSQALLQRGKLT 62 (207)
T ss_pred cEEEEeccCCCCchhHHHHHHHHHHhcCceE
Confidence 48889984 689999999999999998654
No 273
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=20.15 E-value=71 Score=33.43 Aligned_cols=41 Identities=17% Similarity=0.330 Sum_probs=30.0
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHH
Q 007911 75 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITED 130 (585)
Q Consensus 75 ~l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~ 130 (585)
.-.++++-|-| ||||+-.+|..+++.. +. +|.++|.++..+
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~~p~--------~G-------~i~i~G~~~~~~ 72 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLLKPT--------SG-------EILVLGYDVVKE 72 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcCCC--------ce-------EEEEcCEeCccC
Confidence 33689999999 5888888888777642 12 278888877653
Done!