Query 007911
Match_columns 585
No_of_seqs 422 out of 2919
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 13:32:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007911.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007911hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nrs_A Dihydrofolate:folylpoly 100.0 1.7E-72 5.9E-77 611.5 42.6 401 24-584 12-436 (437)
2 2vos_A Folylpolyglutamate synt 100.0 1.1E-71 3.7E-76 613.0 44.5 415 27-585 26-484 (487)
3 1jbw_A Folylpolyglutamate synt 100.0 4.9E-69 1.7E-73 582.3 43.7 404 26-584 1-424 (428)
4 1o5z_A Folylpolyglutamate synt 100.0 2E-69 6.9E-74 588.2 40.9 401 25-584 12-432 (442)
5 1w78_A FOLC bifunctional prote 100.0 2.4E-65 8.4E-70 552.2 43.0 393 26-584 11-415 (422)
6 1e8c_A UDP-N-acetylmuramoylala 100.0 9.7E-50 3.3E-54 439.4 29.4 292 56-462 85-414 (498)
7 2wtz_A UDP-N-acetylmuramoyl-L- 100.0 1.5E-48 5.1E-53 433.7 32.2 351 57-579 124-510 (535)
8 1gg4_A UDP-N-acetylmuramoylala 100.0 3.3E-45 1.1E-49 398.8 23.7 279 56-461 79-392 (452)
9 2am1_A SP protein, UDP-N-acety 100.0 4.9E-45 1.7E-49 397.4 19.0 280 56-461 79-388 (454)
10 1p3d_A UDP-N-acetylmuramate--a 100.0 9.4E-43 3.2E-47 381.5 29.4 323 76-581 118-470 (475)
11 2f00_A UDP-N-acetylmuramate--L 100.0 1.7E-42 5.7E-47 381.1 24.2 328 76-582 119-477 (491)
12 1j6u_A UDP-N-acetylmuramate-al 100.0 1.3E-41 4.4E-46 372.3 28.7 256 75-462 113-388 (469)
13 2x5o_A UDP-N-acetylmuramoylala 100.0 9.7E-42 3.3E-46 370.0 20.9 211 75-373 103-333 (439)
14 4hv4_A UDP-N-acetylmuramate--L 100.0 1.2E-38 3.9E-43 351.0 32.3 327 76-580 122-478 (494)
15 3hn7_A UDP-N-acetylmuramate-L- 100.0 1.2E-37 4E-42 345.3 32.6 336 75-580 121-513 (524)
16 3lk7_A UDP-N-acetylmuramoylala 100.0 9.2E-38 3.1E-42 340.0 30.6 211 75-371 111-342 (451)
17 3eag_A UDP-N-acetylmuramate:L- 99.9 2.2E-27 7.4E-32 248.0 16.1 193 75-329 107-326 (326)
18 3mvn_A UDP-N-acetylmuramate:L- 99.4 2.6E-12 8.9E-17 121.0 12.3 87 315-460 12-100 (163)
19 2obn_A Hypothetical protein; s 93.2 0.23 7.8E-06 52.0 8.7 36 76-111 152-190 (349)
20 3fwy_A Light-independent proto 91.8 0.12 4E-06 53.2 4.3 35 74-108 46-82 (314)
21 1byi_A Dethiobiotin synthase; 90.7 0.17 5.9E-06 48.1 4.1 32 77-108 2-36 (224)
22 3dm5_A SRP54, signal recogniti 89.4 7.4 0.00025 41.8 15.9 35 76-110 100-136 (443)
23 3bfv_A CAPA1, CAPB2, membrane 89.3 0.38 1.3E-05 48.1 5.4 35 74-108 80-117 (271)
24 3of5_A Dethiobiotin synthetase 88.6 0.35 1.2E-05 47.2 4.4 36 74-109 2-40 (228)
25 4dzz_A Plasmid partitioning pr 88.1 0.39 1.3E-05 44.7 4.3 34 76-109 1-37 (206)
26 3kl4_A SRP54, signal recogniti 88.0 3.4 0.00012 44.3 12.0 36 76-111 97-134 (433)
27 3fgn_A Dethiobiotin synthetase 87.3 0.45 1.5E-05 47.3 4.4 36 74-109 24-62 (251)
28 3cio_A ETK, tyrosine-protein k 87.3 0.47 1.6E-05 48.1 4.6 35 74-108 102-139 (299)
29 1xjc_A MOBB protein homolog; s 86.8 0.54 1.8E-05 44.0 4.3 36 75-110 3-40 (169)
30 1g3q_A MIND ATPase, cell divis 86.4 0.53 1.8E-05 44.9 4.2 32 77-108 3-37 (237)
31 3la6_A Tyrosine-protein kinase 85.9 0.55 1.9E-05 47.4 4.2 35 74-108 90-127 (286)
32 3ez2_A Plasmid partition prote 85.5 1.1 3.7E-05 46.9 6.5 53 56-108 85-149 (398)
33 1wcv_1 SOJ, segregation protei 84.3 0.63 2.1E-05 45.5 3.7 34 75-108 5-41 (257)
34 2oze_A ORF delta'; para, walke 84.1 1.1 3.7E-05 44.6 5.4 44 57-108 23-71 (298)
35 1hyq_A MIND, cell division inh 83.4 0.81 2.8E-05 44.5 4.1 32 77-108 3-37 (263)
36 3q9l_A Septum site-determining 82.7 0.95 3.3E-05 43.7 4.3 32 77-108 3-37 (260)
37 3ea0_A ATPase, para family; al 82.3 0.78 2.7E-05 43.9 3.4 34 75-108 3-40 (245)
38 2ph1_A Nucleotide-binding prot 82.1 1 3.5E-05 44.1 4.2 33 76-108 18-53 (262)
39 3qxc_A Dethiobiotin synthetase 81.8 1.1 3.8E-05 44.2 4.3 35 75-109 20-57 (242)
40 2xj4_A MIPZ; replication, cell 81.6 1.1 3.6E-05 44.8 4.2 32 77-108 5-39 (286)
41 3k9g_A PF-32 protein; ssgcid, 80.9 0.98 3.4E-05 44.1 3.6 34 74-108 25-61 (267)
42 4a0g_A Adenosylmethionine-8-am 79.5 6.6 0.00023 45.5 10.5 35 75-109 33-75 (831)
43 3cwq_A Para family chromosome 78.5 1.3 4.5E-05 42.0 3.5 30 78-108 2-34 (209)
44 3fkq_A NTRC-like two-domain pr 78.4 2.5 8.6E-05 43.9 5.9 36 73-108 140-178 (373)
45 3ez9_A Para; DNA binding, wing 77.2 2.2 7.6E-05 44.6 5.1 54 55-108 87-152 (403)
46 2f1r_A Molybdopterin-guanine d 77.0 1.6 5.4E-05 40.6 3.5 32 76-107 2-35 (171)
47 2px0_A Flagellar biosynthesis 74.6 1.7 5.9E-05 43.9 3.3 36 75-110 104-142 (296)
48 1vma_A Cell division protein F 74.5 4.3 0.00015 41.3 6.3 35 75-109 103-139 (306)
49 3end_A Light-independent proto 74.2 2.4 8.3E-05 42.3 4.3 35 74-108 39-75 (307)
50 1zu4_A FTSY; GTPase, signal re 73.5 4.3 0.00015 41.5 6.0 35 75-109 104-140 (320)
51 1cp2_A CP2, nitrogenase iron p 72.5 2.4 8.2E-05 41.2 3.7 32 77-108 2-35 (269)
52 2g0t_A Conserved hypothetical 70.7 3.4 0.00012 43.1 4.5 36 76-111 169-207 (350)
53 2afh_E Nitrogenase iron protei 70.4 3.2 0.00011 41.0 4.1 33 76-108 2-36 (289)
54 1rz3_A Hypothetical protein rb 69.9 6 0.00021 36.9 5.7 36 74-109 20-57 (201)
55 3zq6_A Putative arsenical pump 68.8 3.8 0.00013 41.6 4.4 36 74-109 11-49 (324)
56 3c8u_A Fructokinase; YP_612366 67.7 11 0.00038 35.1 7.1 33 75-107 21-55 (208)
57 3pg5_A Uncharacterized protein 64.9 4.4 0.00015 41.9 3.9 33 76-108 1-36 (361)
58 3tqc_A Pantothenate kinase; bi 64.8 20 0.00067 36.7 8.8 35 74-108 90-128 (321)
59 1np6_A Molybdopterin-guanine d 63.3 6.6 0.00023 36.4 4.5 36 75-110 5-42 (174)
60 2i3b_A HCR-ntpase, human cance 58.8 9 0.00031 35.9 4.6 43 78-120 3-47 (189)
61 3ug7_A Arsenical pump-driving 57.2 5.3 0.00018 41.1 2.9 35 75-109 24-61 (349)
62 3e70_C DPA, signal recognition 56.0 5.5 0.00019 40.9 2.7 35 75-109 128-164 (328)
63 1a7j_A Phosphoribulokinase; tr 53.6 12 0.00041 37.4 4.8 34 75-108 4-39 (290)
64 2woo_A ATPase GET3; tail-ancho 52.9 9.1 0.00031 39.0 3.8 33 77-109 19-54 (329)
65 3b9q_A Chloroplast SRP recepto 51.0 15 0.00052 37.0 5.0 34 76-109 100-135 (302)
66 2v3c_C SRP54, signal recogniti 50.9 6.8 0.00023 41.8 2.5 35 76-110 99-135 (432)
67 3igf_A ALL4481 protein; two-do 49.4 62 0.0021 33.7 9.6 28 83-110 11-38 (374)
68 2yvu_A Probable adenylyl-sulfa 49.1 18 0.0006 32.8 4.8 34 75-108 12-47 (186)
69 1nks_A Adenylate kinase; therm 48.5 13 0.00045 33.4 3.8 32 77-108 2-35 (194)
70 1j8m_F SRP54, signal recogniti 48.1 18 0.00062 36.3 5.1 35 76-110 98-134 (297)
71 2z0h_A DTMP kinase, thymidylat 47.0 18 0.00061 32.7 4.5 29 78-106 2-32 (197)
72 3te6_A Regulatory protein SIR3 45.9 10 0.00034 38.9 2.8 78 57-144 29-106 (318)
73 2og2_A Putative signal recogni 45.8 20 0.00067 37.3 5.0 35 75-109 156-192 (359)
74 2vo1_A CTP synthase 1; pyrimid 45.6 18 0.0006 36.5 4.3 34 74-107 21-58 (295)
75 2p67_A LAO/AO transport system 45.4 23 0.00077 36.1 5.4 47 61-109 43-91 (341)
76 3p32_A Probable GTPase RV1496/ 45.3 25 0.00086 35.9 5.8 48 60-109 65-114 (355)
77 2xxa_A Signal recognition part 44.5 18 0.00062 38.5 4.6 36 75-110 99-137 (433)
78 2j37_W Signal recognition part 44.3 28 0.00097 37.8 6.2 35 75-109 100-136 (504)
79 2pez_A Bifunctional 3'-phospho 43.9 20 0.00068 32.3 4.2 29 77-105 6-36 (179)
80 3kjh_A CO dehydrogenase/acetyl 43.3 6.8 0.00023 37.0 0.9 30 79-108 3-34 (254)
81 1nn5_A Similar to deoxythymidy 43.2 23 0.00078 32.5 4.6 32 77-108 10-43 (215)
82 2c5m_A CTP synthase; cytidine 43.2 15 0.00051 36.8 3.3 33 74-106 21-57 (294)
83 1nij_A Hypothetical protein YJ 42.7 13 0.00044 37.6 3.0 48 75-129 3-52 (318)
84 3pzx_A Formate--tetrahydrofola 42.6 28 0.00095 38.0 5.6 35 74-108 55-95 (557)
85 2yhs_A FTSY, cell division pro 42.4 31 0.0011 37.6 6.1 34 75-108 292-327 (503)
86 1rj9_A FTSY, signal recognitio 42.1 23 0.00078 35.8 4.7 34 76-109 102-137 (304)
87 2pbr_A DTMP kinase, thymidylat 41.0 19 0.00064 32.4 3.6 28 78-105 2-31 (195)
88 2wwf_A Thymidilate kinase, put 40.9 28 0.00097 31.9 4.9 32 75-106 9-42 (212)
89 1pjq_A CYSG, siroheme synthase 40.8 16 0.00056 39.0 3.6 23 78-101 123-146 (457)
90 3iqw_A Tail-anchored protein t 39.8 16 0.00056 37.4 3.2 28 82-109 24-51 (334)
91 3lv8_A DTMP kinase, thymidylat 39.6 22 0.00075 34.6 4.0 34 76-109 27-62 (236)
92 3io3_A DEHA2D07832P; chaperone 39.4 18 0.00063 37.2 3.6 34 77-110 19-56 (348)
93 1xx6_A Thymidine kinase; NESG, 38.1 43 0.0015 31.3 5.7 35 75-109 7-43 (191)
94 3hjn_A DTMP kinase, thymidylat 38.0 11 0.00036 35.6 1.3 34 79-112 3-38 (197)
95 2jeo_A Uridine-cytidine kinase 37.4 16 0.00053 35.1 2.5 24 75-98 24-49 (245)
96 2if2_A Dephospho-COA kinase; a 37.4 12 0.00042 34.4 1.7 20 77-96 2-23 (204)
97 2ffh_A Protein (FFH); SRP54, s 37.1 24 0.00083 37.5 4.2 36 75-110 97-134 (425)
98 1g5t_A COB(I)alamin adenosyltr 36.4 28 0.00095 33.1 4.0 33 77-109 29-63 (196)
99 3ec2_A DNA replication protein 36.2 32 0.0011 30.8 4.4 32 76-107 38-72 (180)
100 3do6_A Formate--tetrahydrofola 35.2 57 0.0019 35.5 6.5 95 160-259 273-395 (543)
101 3asz_A Uridine kinase; cytidin 35.1 18 0.00063 33.4 2.5 24 76-99 6-31 (211)
102 2woj_A ATPase GET3; tail-ancho 34.7 27 0.00094 35.9 4.0 34 77-110 18-56 (354)
103 4ehx_A Tetraacyldisaccharide 4 34.6 51 0.0018 33.4 6.0 50 58-109 17-71 (315)
104 2w0m_A SSO2452; RECA, SSPF, un 33.7 32 0.0011 31.6 4.0 34 76-109 23-58 (235)
105 1jjv_A Dephospho-COA kinase; P 33.0 20 0.00069 33.0 2.4 20 77-96 3-24 (206)
106 3aez_A Pantothenate kinase; tr 32.3 37 0.0013 34.3 4.5 34 74-107 88-125 (312)
107 2qm8_A GTPase/ATPase; G protei 32.1 50 0.0017 33.6 5.5 47 61-109 42-90 (337)
108 1uf9_A TT1252 protein; P-loop, 31.0 22 0.00075 32.3 2.3 26 72-97 4-31 (203)
109 1ls1_A Signal recognition part 30.9 38 0.0013 33.8 4.3 35 75-109 97-133 (295)
110 4tmk_A Protein (thymidylate ki 30.8 44 0.0015 31.8 4.4 29 77-105 4-35 (213)
111 3upu_A ATP-dependent DNA helic 30.6 22 0.00076 37.7 2.5 36 76-112 48-83 (459)
112 1gtv_A TMK, thymidylate kinase 30.3 13 0.00044 34.3 0.5 34 78-111 2-37 (214)
113 1odf_A YGR205W, hypothetical 3 29.1 28 0.00094 34.9 2.8 29 74-102 29-59 (290)
114 3e1s_A Exodeoxyribonuclease V, 28.8 27 0.00093 38.5 2.9 35 77-112 205-241 (574)
115 3tr0_A Guanylate kinase, GMP k 28.8 22 0.00075 32.5 1.9 22 77-98 8-31 (205)
116 1sq5_A Pantothenate kinase; P- 28.7 28 0.00096 34.8 2.8 26 74-99 78-105 (308)
117 2q3l_A Uncharacterized protein 28.7 2.8E+02 0.0095 23.7 9.3 105 353-554 22-126 (126)
118 3a00_A Guanylate kinase, GMP k 28.6 15 0.00052 33.6 0.7 23 77-99 2-26 (186)
119 3ake_A Cytidylate kinase; CMP 28.5 28 0.00094 31.8 2.5 22 77-98 3-26 (208)
120 1ihu_A Arsenical pump-driving 28.4 40 0.0014 36.9 4.2 34 77-110 9-44 (589)
121 2kjq_A DNAA-related protein; s 27.6 80 0.0027 27.9 5.4 35 75-109 35-71 (149)
122 1cke_A CK, MSSA, protein (cyti 27.6 29 0.001 32.2 2.5 22 77-98 6-29 (227)
123 1zuh_A Shikimate kinase; alpha 27.4 30 0.001 30.6 2.5 25 74-98 5-31 (168)
124 3lnc_A Guanylate kinase, GMP k 27.0 29 0.001 32.7 2.4 25 75-99 26-53 (231)
125 1uj2_A Uridine-cytidine kinase 26.8 27 0.00093 33.5 2.2 27 74-100 20-48 (252)
126 4edh_A DTMP kinase, thymidylat 26.8 55 0.0019 31.0 4.4 35 77-111 7-43 (213)
127 3pzx_A Formate--tetrahydrofola 26.4 54 0.0019 35.8 4.6 92 160-256 287-406 (557)
128 3nva_A CTP synthase; rossman f 26.4 52 0.0018 36.1 4.5 33 76-108 3-39 (535)
129 3kb2_A SPBC2 prophage-derived 26.1 33 0.0011 30.0 2.5 22 77-98 2-25 (173)
130 1kag_A SKI, shikimate kinase I 25.1 26 0.00089 31.0 1.6 22 77-98 5-28 (173)
131 4eun_A Thermoresistant glucoki 25.0 35 0.0012 31.4 2.5 23 76-98 29-53 (200)
132 2plr_A DTMP kinase, probable t 24.7 48 0.0016 30.1 3.4 28 77-105 5-34 (213)
133 3dfr_A Dihydrofolate reductase 24.5 48 0.0016 30.2 3.3 40 539-584 72-111 (162)
134 3czq_A Putative polyphosphate 24.3 78 0.0027 32.1 5.1 50 57-112 73-124 (304)
135 2e2z_A TIM15; protein import, 24.1 64 0.0022 27.5 3.7 37 205-241 51-90 (100)
136 1ye8_A Protein THEP1, hypothet 23.9 38 0.0013 31.1 2.5 22 78-99 2-25 (178)
137 3a4m_A L-seryl-tRNA(SEC) kinas 23.7 70 0.0024 30.8 4.6 31 76-106 4-36 (260)
138 1cr0_A DNA primase/helicase; R 23.6 59 0.002 31.8 4.1 35 75-109 34-71 (296)
139 3tau_A Guanylate kinase, GMP k 22.7 38 0.0013 31.5 2.3 24 76-99 8-33 (208)
140 1kht_A Adenylate kinase; phosp 22.7 61 0.0021 28.8 3.7 28 77-104 4-33 (192)
141 3syl_A Protein CBBX; photosynt 22.2 66 0.0023 31.3 4.1 26 77-103 71-96 (309)
142 1vdr_A DHFR, dihydrofolate red 21.9 62 0.0021 29.1 3.5 40 539-584 75-114 (162)
143 1vco_A CTP synthetase; tetrame 21.5 62 0.0021 35.6 4.0 34 77-110 13-50 (550)
144 1q3t_A Cytidylate kinase; nucl 21.3 49 0.0017 31.3 2.8 25 74-98 14-40 (236)
145 2j41_A Guanylate kinase; GMP, 21.3 31 0.001 31.4 1.3 22 77-98 7-30 (207)
146 2grj_A Dephospho-COA kinase; T 21.1 46 0.0016 31.0 2.5 24 75-98 11-36 (192)
147 1s1m_A CTP synthase; CTP synth 20.5 67 0.0023 35.3 4.0 34 77-110 4-41 (545)
148 3uie_A Adenylyl-sulfate kinase 20.4 95 0.0032 28.3 4.5 29 76-104 25-55 (200)
149 3v9p_A DTMP kinase, thymidylat 20.2 90 0.0031 30.0 4.5 37 75-111 24-66 (227)
No 1
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=100.00 E-value=1.7e-72 Score=611.54 Aligned_cols=401 Identities=26% Similarity=0.331 Sum_probs=310.4
Q ss_pred CcCcHHHHHHHHHhhhhhhhcCCCccccccCCChHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCC
Q 007911 24 LSSSYENAMQALSSLITRQKRGEQSHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGF 103 (585)
Q Consensus 24 ~~~~y~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~ 103 (585)
...+|+++++||.++..+ +.+++|+||+++|++||+ |+.++++|||||||||||||+||++||+++|+
T Consensus 12 ~~~~~~~~l~~l~~~~~~----------~~~~gL~r~~~ll~~lg~--p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~G~ 79 (437)
T 3nrs_A 12 ATSPLAAWLCYLEHLHSQ----------PIELGLERVKQVAERLDL--LKPAPKIFTVAGTNGKGTTCCTLEAILLAAGL 79 (437)
T ss_dssp TTSCHHHHHHHHHTC-----------------CCHHHHHHHHHTTC--SCSSSEEEEEECSSSHHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHhcCCC----------CCCCCHHHHHHHHHHcCC--ccccCCEEEEECCcChHHHHHHHHHHHHHCCC
Confidence 346899999999998754 233789999999999994 78899999999999999999999999999999
Q ss_pred CeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeecCC
Q 007911 104 RTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLG 183 (585)
Q Consensus 104 kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lTllA~~~F~~~~vd~aVlEvG~g 183 (585)
|||+||||||.+|||||+|||++|+++.|.++|.+|..... + ..||+||+.|++||.+|.++++|++|||||+|
T Consensus 80 ~vg~~tSphl~~~neri~i~g~~i~~~~~~~~~~~v~~~~~-----~-~~~T~fe~~t~~a~~~f~~~~~d~~VlEvGlg 153 (437)
T 3nrs_A 80 RVGVYSSPHLLRYTERVRIQGQELSEAEHSHSFAQIEAGRG-----D-ISLTYFEFGTLSALQLFKQAKLDVVILEVGLG 153 (437)
T ss_dssp CEEEECCCCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHT-----T-CCCCHHHHHHHHHHHHHHHTCCSEEEEECSSS
T ss_pred cEEEECCCCcCCcceEEEECCEECCHHHHHHHHHHHHHhhc-----C-CCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 99999999999999999999999999999999877655331 1 35899999999999999999999999999999
Q ss_pred CCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccCCCCcEEeeCCchHHHHHHHHHHHhcCccEEEecc-c
Q 007911 184 GEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAP-L 262 (585)
Q Consensus 184 Gr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~g~~aV~~~qd~~~~~vl~~~a~~~~~~l~~~~~-~ 262 (585)
||+|+||++ +|+++|||||+.||+|+||+|+|+||++|++||++++++|++.+++. .++.+.|++.+++++.++. +
T Consensus 154 grld~tnii-~p~vaVITnI~~DHld~lG~t~e~ia~~Ka~I~~~~~~~V~~~d~~~--~~~~~~a~~~~~~~~~~g~~~ 230 (437)
T 3nrs_A 154 GRLDATNIV-DSDVAAITSIALDHTDWLGYDRESIGREKAGVFRGGKPAVVGEPDMP--QSIADVAAELGAQLYRRDVAW 230 (437)
T ss_dssp STTSGGGGS-CCSEEEECCCCCCBCCCTTCSHHHHHHHHGGGCCTTSEEEECCSSCC--HHHHHHHHHHTCEEEEBTTTE
T ss_pred Ccccccccc-CCCEEEEcCccHHHHHHhCCcHHHHHHHHHhhccCCCeEEECCccHH--HHHHHHHHHcCCcEEEecccc
Confidence 999999999 69999999999999999999999999999999999999999987653 4677788888888776642 1
Q ss_pred ch---------------h-h-------hhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHH
Q 007911 263 DI---------------E-K-------LKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVR 319 (585)
Q Consensus 263 ~~---------------~-~-------~~~~~l~L~G~hq~~Na~lAia~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~ 319 (585)
+. . . ...+.++++| ||..|++.|++++..+ ..| ..++.|.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~-~~~~Na~~Alaa~~~~--~lg-------------i~~~~i~~ 294 (437)
T 3nrs_A 231 KFSQQEPFDQQEPVDQQINGWHWQCGERQLTGLPVPN-VPLANAATALAVLHYS--ELP-------------LSDEAIRQ 294 (437)
T ss_dssp EEEC--------------CCEEEEETTEEEEEECCCS-SCHHHHHHHHHHHHHH--TCC-------------CCHHHHHH
T ss_pred eeeecccccccccccccCceEEEecCCcceeccCCcc-hhHHHHHHHHHHHHHh--CCC-------------CCHHHHHH
Confidence 00 0 0 0124566674 4555555555554443 113 23688999
Q ss_pred HHhhCCCCCcEEEEecccCCCCCCCccccCCCCeEEEEecCCCHHHHHHHHHHHHhhhccCCCCCCccccccccccchhH
Q 007911 320 GLSTAHLLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEE 399 (585)
Q Consensus 320 gL~~~~~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilDgAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 399 (585)
||+++.||||||++... +.+|+||||||+|+++++++++...+..
T Consensus 295 gL~~~~~pGR~e~v~~~----------------~~vi~D~AHNp~a~~all~~l~~~~~~~------------------- 339 (437)
T 3nrs_A 295 GLQAASLPGRFQVVSEQ----------------PLLILDVAHNPHAARYLVNRLAQVINPV------------------- 339 (437)
T ss_dssp HHHHCCCTTSSEEEETT----------------TEEEECCCCSHHHHHHHHHHHHHTC----------------------
T ss_pred HHHhCCCCCceEEEecC----------------CeEEEECCCCHHHHHHHHHHHHhhcchh-------------------
Confidence 99999999999999754 5799999999999999999997211000
Q ss_pred HHhhccccccccccccccccCccEEEEEecCCCCChhhhhHHHHHHhhhcCCCccEEEEeCCCcccccccCCCCccCCCc
Q 007911 400 VVQRNGYIGHKMEKTKHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAI 479 (585)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~~~Rd~~~ll~~l~~~~~~~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~ 479 (585)
...+.+++++||||++|||...+++.|.+ .++++++++.. +.+. .
T Consensus 340 ----------------~~~~~~r~i~V~G~~~dkd~~~~~~~l~~-------~~~~v~~~~~~--------~~r~----~ 384 (437)
T 3nrs_A 340 ----------------NASKQGKVRAVVGMLSDKDIAGTLACLSE-------RVDEWYCAPLE--------GPRG----A 384 (437)
T ss_dssp ---------------------CCEEEEECCBTTBCHHHHHHHHTT-------TCCEEEECCCS--------STTB----C
T ss_pred ----------------hhcCCCCEEEEEeCCCCCCHHHHHHHHHh-------cCCEEEEeCCC--------CCCC----C
Confidence 00123578999999999999887766632 46888887654 1111 1
Q ss_pred cccchhHHHHHHHHHHHhhcCCCCcccccccccccccCCCccccccCCCCCCCCcccCccceecCCHHHHHHHHHhhhhc
Q 007911 480 SGKDLSWQFSLQRLWERIIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQE 559 (585)
Q Consensus 480 ~~~~~~~q~~~~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~ai~~~~~~~~~ 559 (585)
+. +++..... .. .++++.++|++++.+.+++
T Consensus 385 ~~-------------~~l~~~~~-----------------------------------~~-~~~~d~~~Ai~~a~~~a~~ 415 (437)
T 3nrs_A 385 SA-------------GQLAEHLV-----------------------------------SA-RQFSDVETAWRQAMQDADT 415 (437)
T ss_dssp CH-------------HHHHTTCS-----------------------------------SC-EECSSHHHHHHHHHHHCCT
T ss_pred CH-------------HHHHHHHh-----------------------------------hC-CCcCCHHHHHHHHHHhcCC
Confidence 11 11211000 01 4678999999999887643
Q ss_pred CCCCcceEEEeCchhchHhHHhhhc
Q 007911 560 NPSIRVQVLVTGSLHLVGDVLKLLK 584 (585)
Q Consensus 560 ~~~~~~~VlVTGSlhLVG~~l~~l~ 584 (585)
.--|||+||||+||++++.|.
T Consensus 416 ----~D~VLv~GS~~~v~~~~~~~~ 436 (437)
T 3nrs_A 416 ----QDVVIVCGSFHTVAHVMAALH 436 (437)
T ss_dssp ----TCEEEEESSHHHHHHHHHHTT
T ss_pred ----CCeEEEEehHHHHHHHHHHhc
Confidence 125999999999999998874
No 2
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=100.00 E-value=1.1e-71 Score=613.01 Aligned_cols=415 Identities=25% Similarity=0.323 Sum_probs=330.4
Q ss_pred cHHHHHHHHHhhhhhhhcCCCccccccCCChHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeE
Q 007911 27 SYENAMQALSSLITRQKRGEQSHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTG 106 (585)
Q Consensus 27 ~y~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~kvG 106 (585)
+|+++++||.++.... +..++|+||+.++++|| +|+.++++|||||||||||||+||++||+++|++||
T Consensus 26 ~~~~~~~~l~~~~~~~---------~~~~~L~r~~~ll~~lg--~p~~~~~vI~VtGTNGKtST~~~l~~iL~~~G~~vG 94 (487)
T 2vos_A 26 SLLQVEHLLDQRWPET---------RIDPSLTRISALMDLLG--SPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRTG 94 (487)
T ss_dssp HHHHHHHHHTTTC------------CCCTTCHHHHHHHHHTT--CGGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHhhCccc---------CCCCCHHHHHHHHHHcC--CchhcCeEEEEeCCCCcHHHHHHHHHHHHHcCCCeE
Confidence 6999999998753210 12378999999999999 588899999999999999999999999999999999
Q ss_pred EEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhc----c---CCCCCCCHHHHHHHHHHHHhhhCCCcEEEEe
Q 007911 107 LFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENV----T---EDLPMPPLFQFLTVLAFKIFVCEQVDVAIIE 179 (585)
Q Consensus 107 l~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~----~---~~~~~ps~Fe~lTllA~~~F~~~~vd~aVlE 179 (585)
+|||||+.++||||+|||.+|+++.|.++|.++....+... + .....+++||++|++||.+|.+.++|++|||
T Consensus 95 ~~tSp~l~~~~eri~i~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~~d~~VlE 174 (487)
T 2vos_A 95 RTTSPHLQSPVERISIDGKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAPVDVAVVE 174 (487)
T ss_dssp EECSSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred EECCCCcCcccceEEECCEECCHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999999999999999999999999888776544311 0 0112489999999999999999999999999
Q ss_pred ecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhccc------CCCCcEEeeCCchHHHHHHHHHHHhcC
Q 007911 180 VGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIF------KPQIPAFTVPQLSEAMSVLQDRALELM 253 (585)
Q Consensus 180 vG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~------k~g~~aV~~~qd~~~~~vl~~~a~~~~ 253 (585)
||+||++|+||++ +|+++|||||++||+++||+|+|+||++|++|| |+++++|++.|++++..++.+.|++.+
T Consensus 175 vg~gg~~d~tn~i-~p~vaVITnI~~DHld~lG~t~e~ia~~Ka~i~~~~~~~k~~~~~V~~~dd~~~~~~~~~~a~~~~ 253 (487)
T 2vos_A 175 VGMGGRWDATNVI-NAPVAVITPISIDHVDYLGADIAGIAGEKAGIITRAPDGSPDTVAVIGRQVPKVMEVLLAESVRAD 253 (487)
T ss_dssp CSSSSTTSTTCSS-CCSEEEECCCCCCBCSCSSCCHHHHHHHHHTTCCCCC--CCCCEEEECCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCcccccccc-CCCEEEECCcchhhhhhhCCcHHHHHHHHHHHhhcccccCCCCEEEEeCCCHHHHHHHHHHHHHcC
Confidence 9999999999999 799999999999999999999999999999999 889999999999998888888887777
Q ss_pred ccEEEecc-cc--------------hh----hhhcccccCcchhhHhhHHHHHHHHHHHHHhc---CCCcccccCCCCCC
Q 007911 254 VPLEVAAP-LD--------------IE----KLKRLELSLSGDHQLVNAGLAVSLSECWLRRT---GNWEKVSHNDGQGA 311 (585)
Q Consensus 254 ~~l~~~~~-~~--------------~~----~~~~~~l~L~G~hq~~Na~lAia~a~~ll~~~---g~~~~~~~~~~~~~ 311 (585)
++++.++. +. .. .+..+.++++|.||++|+++|++++..++... |
T Consensus 254 ~~~~~~g~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAiaa~~~l~~~~~~~g------------- 320 (487)
T 2vos_A 254 ASVAREDSEFAVLRRQIAVGGQVLQLQGLGGVYSDIYLPLHGEHQAHNAVLALASVEAFFGAGAQRQ------------- 320 (487)
T ss_dssp CEEEEBTTTBEEEEEEEETTEEEEEEEETTEEEEEEEECCCSHHHHHHHHHHHHHHHHHTTC----C-------------
T ss_pred CeEEEecCceEEEeeccccCCceEEEecCCcccceeecCCCCHHHHHHHHHHHHHHHHHhhccccCC-------------
Confidence 77665431 10 00 01246789999999999999999998862110 2
Q ss_pred CcHHHHHHHHhhCCCCCcEEEEecccCCCCCCCccccCCCCeEEEEecCCCHHHHHHHHHHHHhhhccCCCCCCcccccc
Q 007911 312 DLPDAFVRGLSTAHLLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSST 391 (585)
Q Consensus 312 ~~~e~i~~gL~~~~~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilDgAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~ 391 (585)
..++.|.+||+++.||||||++... +.||+||||||+|+++++++++...
T Consensus 321 i~~~~i~~gL~~~~~pGR~e~v~~~----------------~~vi~D~AHNp~a~~a~l~~l~~~~-------------- 370 (487)
T 2vos_A 321 LDGDAVRAGFAAVTSPGRLERMRSA----------------PTVFIDAAHNPAGASALAQTLAHEF-------------- 370 (487)
T ss_dssp CCHHHHHHHHHTCCCTTSSEEEETT----------------TEEEECCCCSHHHHHHHHHHHHHSC--------------
T ss_pred CCHHHHHHHHHhCcCCCceEEEcCC----------------CeEEEECCCCHHHHHHHHHHHHHhc--------------
Confidence 2368899999999999999999753 5899999999999999999987631
Q ss_pred ccccchhHHHhhccccccccccccccccCccEEEEEecCCCCChhhhhHHHHHHhhhcCCCccEEEEeCCCcccccccCC
Q 007911 392 TKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSG 471 (585)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~~~Rd~~~ll~~l~~~~~~~~~~fd~~if~~~~~~~~~~~~~ 471 (585)
+.+++++||||++|||...+++.|.+ .+|.+++++.. +
T Consensus 371 ---------------------------~~~~~i~V~G~~~dkd~~~~~~~l~~-------~~d~vilt~~~--------~ 408 (487)
T 2vos_A 371 ---------------------------DFRFLVGVLSVLGDKDVDGILAALEP-------VFDSVVVTHNG--------S 408 (487)
T ss_dssp ---------------------------CCSEEEEEECCBTTBCHHHHHHHHTT-------TCSEEEECCCS--------C
T ss_pred ---------------------------CCCCEEEEEEecCCCCHHHHHHHHHh-------hCCEEEEeCCC--------C
Confidence 23478999999999999887766632 46888887643 1
Q ss_pred CCccCCCccccchhHHHHHHHHHHHhhcCCCCcccccccccccccCCCccccccCCCCCCCCcccCccceecCCHHHHHH
Q 007911 472 SSFIPLAISGKDLSWQFSLQRLWERIIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIK 551 (585)
Q Consensus 472 ~~~~~~~~~~~~~~~q~~~~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~ai~ 551 (585)
.+.. +. ..+++.++.... . ..+.+++++++|++
T Consensus 409 ~r~~----~~------~~l~~~~~~~~~---~----------------------------------~~~~~~~~~~~Ai~ 441 (487)
T 2vos_A 409 PRAL----DV------EALALAAGERFG---P----------------------------------DRVRTAENLRDAID 441 (487)
T ss_dssp TTBC----CH------HHHHHHHHHHHC---G----------------------------------GGEEECSSHHHHHH
T ss_pred cCCC----CH------HHHHHHHHhhcC---C----------------------------------CceEecCCHHHHHH
Confidence 1111 11 123444433210 0 13567899999999
Q ss_pred HHHhhhhcC------C---CCcceEEEeCchhchHhHHhhhcC
Q 007911 552 WLRDSVQEN------P---SIRVQVLVTGSLHLVGDVLKLLKR 585 (585)
Q Consensus 552 ~~~~~~~~~------~---~~~~~VlVTGSlhLVG~~l~~l~~ 585 (585)
.+.+.++++ . ..+--|||||||||||+++++|++
T Consensus 442 ~a~~~a~~~~~~~~~~~~~~~~d~vlv~GS~y~vg~~~~~l~~ 484 (487)
T 2vos_A 442 VATSLVDDAAADPDVAGDAFSRTGIVITGSVVTAGAARTLFGR 484 (487)
T ss_dssp HHHHHHHHHHTCTTTTC----CEEEEEESSHHHHHHHHHHTTC
T ss_pred HHHHhcccCcccccccccccCCCEEEEEeeHHHHHHHHHhhhh
Confidence 987776532 0 012469999999999999998863
No 3
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=100.00 E-value=4.9e-69 Score=582.32 Aligned_cols=404 Identities=27% Similarity=0.384 Sum_probs=324.6
Q ss_pred CcHHHHHHHHHhhhhhhhcCCCccccccCCChHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCe
Q 007911 26 SSYENAMQALSSLITRQKRGEQSHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRT 105 (585)
Q Consensus 26 ~~y~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~kv 105 (585)
|+|+++++||+++..+ +...+|++|+++|++|| +|..++++|||||||||||||+||++||+++|++|
T Consensus 1 ~~~~~~~~~l~~~~~~----------~~~~~l~~~~~~l~~lg--~p~~~~~vI~VtGTnGKtTT~~~l~~iL~~~G~~v 68 (428)
T 1jbw_A 1 MNYTETVAYIHSFPRL----------AKTGDHRRILTLLHALG--NPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTV 68 (428)
T ss_dssp CCHHHHHHHHTTCCCC----------CCCSSCHHHHHHHHHTT--CGGGSSCEEEEECSSCHHHHHHHHHHHHHHTTCCE
T ss_pred CCHHHHHHHHHhhccc----------CCCCCHHHHHHHHHHcC--CchhcCcEEEEECCCChHHHHHHHHHHHHHCCCCE
Confidence 6899999999987542 12378999999999999 47788999999999999999999999999999999
Q ss_pred EEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhc-cCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeecCCC
Q 007911 106 GLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENV-TEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGG 184 (585)
Q Consensus 106 Gl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~-~~~~~~ps~Fe~lTllA~~~F~~~~vd~aVlEvG~gG 184 (585)
|+|+|||+.++||||+|||.+++++.|.++|+++++...... ..+...|++||++|++||.+|.++++|++|||||+||
T Consensus 69 g~~~sp~l~~~~eri~i~g~~i~~~~~~~~~~~~~~~~~~ig~~~~~~~~t~~e~~t~~a~~~f~~~~~d~~VlEvg~~g 148 (428)
T 1jbw_A 69 GLYTSPFIMRFNERIMIDHEPIPDAALVNAVAFVRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGG 148 (428)
T ss_dssp EEECSSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSS
T ss_pred EEEeCCccCccceEEEECCEECCHHHHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHhCCCCEEEEecCCCc
Confidence 999999999999999999999999999999988887654321 0011248999999999999999999999999999999
Q ss_pred CccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccCCCCcEEeeCCchHHHHHHHHHHHhcCccEEEecc-c-
Q 007911 185 EKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAP-L- 262 (585)
Q Consensus 185 r~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~g~~aV~~~qd~~~~~vl~~~a~~~~~~l~~~~~-~- 262 (585)
|+|+||++ +|+++|||||++||+|+||+|+|+|+++|++||++++++|+|.||+++.+++++.|++.+++++.++. +
T Consensus 149 ~~d~t~~~-~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~~~~~~v~~~dd~~~~~~~~~~a~~~~~~~~~~g~~~~ 227 (428)
T 1jbw_A 149 DTDSTNVI-TPVVSVLTEVALDHQKLLGHTITAIAKHKAGIIKRGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDRDFS 227 (428)
T ss_dssp TTSTTCSC-CCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCCTTCCEEECCCCHHHHHHHHHHHHHHTCCEEEBTTTEE
T ss_pred cccccccC-CCCEEEECcCcHhhhhhhCCCHHHHHHHHhccccCCceEEEeCCCHHHHHHHHHHHHHcCCcEEEeCccce
Confidence 99999999 79999999999999999999999999999999999999999999999888888877766667665541 1
Q ss_pred -------------chh----hhhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC
Q 007911 263 -------------DIE----KLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH 325 (585)
Q Consensus 263 -------------~~~----~~~~~~l~L~G~hq~~Na~lAia~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~ 325 (585)
... .+..+.++++|.||++|+++|++++..+....+. . ..++.|.+||+++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAia~~~~l~g~~~~-~----------i~~~~i~~~L~~~~ 296 (428)
T 1jbw_A 228 VPKAKLHGWGQRFTYEDQDGRISDLEVPLVGDYQQRNMAIAIQTAKVYAKQTEW-P----------LTPQNIRQGLAASH 296 (428)
T ss_dssp EEEEEECSSSEEEEEEETTEEEEEEEESCCSTHHHHHHHHHHHHHHHHHHHTTC-C----------CCHHHHHHHHHTCC
T ss_pred eeccccccCCceEEEecCCccccccccCCCChhHHHHHHHHHHHHHHHhhccCC-C----------CCHHHHHHHHHhCc
Confidence 000 0114678999999999999999999875232111 0 23688999999999
Q ss_pred CCCcEEEEecccCCCCCCCccccCCCCeEEEEecCCCHHHHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhcc
Q 007911 326 LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNG 405 (585)
Q Consensus 326 ~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilDgAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 405 (585)
||||||++... ..+|+||||||+|++++++++++..
T Consensus 297 ~~gR~e~~~~~----------------~~viiD~AhNp~s~~a~l~~l~~~~---------------------------- 332 (428)
T 1jbw_A 297 WPARLEKISDT----------------PLIVIDGAHNPDGINGLITALKQLF---------------------------- 332 (428)
T ss_dssp CTTSSEEEETT----------------TTEEEECCCSHHHHHHHHHHHHHHC----------------------------
T ss_pred CCCceEEecCC----------------CcEEEECCcCHHHHHHHHHHHHHhc----------------------------
Confidence 99999999653 3689999999999999999997651
Q ss_pred ccccccccccccccCccEEEEEecCCCCChhhhhHHHHHHhhhcCCCccEEEEeCCCcccccccCCCCccCCCccccchh
Q 007911 406 YIGHKMEKTKHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLS 485 (585)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~ilvFg~~~~Rd~~~ll~~l~~~~~~~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (585)
+ +++++|||++++||...+++.+.+ .+|.+++++... ..+..+.
T Consensus 333 -------------~-~~~i~V~g~~~~kd~~~~~~~~~~-------~~d~vi~~~~~~-------~~r~~~~-------- 376 (428)
T 1jbw_A 333 -------------S-QPITVIAGILADKDYAAMADRLTA-------AFSTVYLVPVPG-------TPRALPE-------- 376 (428)
T ss_dssp -------------S-SCCEEEEECSSSTTHHHHHHHHHH-------HCSEEEECCCSC-------C--------------
T ss_pred -------------C-CCEEEEEeeCCCCCHHHHHHHHhh-------hCCEEEEECCCC-------CCCCCCH--------
Confidence 2 468999999999999988777644 268888855420 0010000
Q ss_pred HHHHHHHHHHHhhcCCCCcccccccccccccCCCccccccCCCCCCCCcccCccceecCCHHHHHHHHHhhhhcCCCCcc
Q 007911 486 WQFSLQRLWERIIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRV 565 (585)
Q Consensus 486 ~q~~~~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~ai~~~~~~~~~~~~~~~ 565 (585)
+.+... ..+.++++.++|++.+.+.+ . +.
T Consensus 377 ---------~~l~~~-------------------------------------~~~~~~~~~~~ai~~a~~~~-~--~d-- 405 (428)
T 1jbw_A 377 ---------AGYEAL-------------------------------------HEGRLKDSWQEALAASLNDV-P--DQ-- 405 (428)
T ss_dssp -------------------------------------------------------CBCSSHHHHHHHHHHHC-T--TS--
T ss_pred ---------HHHHhh-------------------------------------hCCeecCCHHHHHHHHHhhC-C--CC--
Confidence 011000 01245689999999887665 3 22
Q ss_pred eEEEeCchhchHhHHhhhc
Q 007911 566 QVLVTGSLHLVGDVLKLLK 584 (585)
Q Consensus 566 ~VlVTGSlhLVG~~l~~l~ 584 (585)
-|||+||+|++|++++.|+
T Consensus 406 ~vLv~GS~~~~~~~~~~l~ 424 (428)
T 1jbw_A 406 PIVITGSLYLASAVRQTLL 424 (428)
T ss_dssp CEEEEESHHHHHHHHHHHT
T ss_pred eEEEEeeHHHHHHHHHHHh
Confidence 5999999999999998875
No 4
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=100.00 E-value=2e-69 Score=588.20 Aligned_cols=401 Identities=30% Similarity=0.436 Sum_probs=319.5
Q ss_pred cCcHHHHHHHHHhhhhhhhcCCCccccccCCChHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCC
Q 007911 25 SSSYENAMQALSSLITRQKRGEQSHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFR 104 (585)
Q Consensus 25 ~~~y~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~k 104 (585)
.|.|+++++||+++..+.. ...+|++|+++|++|| +|..++++|||||||||||||+||++||+++|++
T Consensus 12 ~~~~~~~~~~l~~~~~~~~---------~~~gl~~~~~~l~~lg--~p~~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~ 80 (442)
T 1o5z_A 12 HMAYLEVLRYLYHKRPMGK---------VKPGLERISMLLSKLG--NPHLEYKTIHIGGTNGKGSVANMVSNILVSQGYR 80 (442)
T ss_dssp HHHHHHHHHHHHTC--------------CCCCSHHHHHHHHHTT--CGGGSSEEEEEECSSSHHHHHHHHHHHHHHHTCC
T ss_pred hhhHHHHHHHHHhhCcCCC---------CCCCHHHHHHHHHHcC--CchhcCCEEEEECCcCHHHHHHHHHHHHHHCCCC
Confidence 4789999999998754310 2368999999999999 4778899999999999999999999999999999
Q ss_pred eEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeecCCC
Q 007911 105 TGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGG 184 (585)
Q Consensus 105 vGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lTllA~~~F~~~~vd~aVlEvG~gG 184 (585)
||+|||||+.++||||+|||.+++++.|.++|+++++............|++||++|++||.+|.+.++|++|+|||+||
T Consensus 81 vg~~~Sphl~~~neri~inG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~~t~~a~~~f~~~~~d~~VlEvg~~g 160 (442)
T 1o5z_A 81 VGSYYSPHLSTFRERIRLNEEYISEEDVVKIYETMEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGG 160 (442)
T ss_dssp EEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHHHHHTTSTTTCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSS
T ss_pred EEEECCCCcCccceeEEECCEECCHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 99999999999999999999999999999999888876544322222458999999999999999999999999999999
Q ss_pred CccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccCCCCcEEeeCCchHHHHHHHHHHHhcCccEEEecc-cc
Q 007911 185 EKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAP-LD 263 (585)
Q Consensus 185 r~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~g~~aV~~~qd~~~~~vl~~~a~~~~~~l~~~~~-~~ 263 (585)
|+|+||++ +|+++|||||++||+|+||+|+|+|+++|++||+++.++|++.||+++.+++.+.|.+++++++.++. +.
T Consensus 161 ~~d~t~~~-~P~vaViTnI~~DHld~~G~t~e~ia~~K~~i~~~~~~~V~~~dd~~~~~~~~~~a~~~~~~~~~~~~d~~ 239 (442)
T 1o5z_A 161 RLDATNVV-FPLCSTIVTVDRDHEKTLGYTIEQIAWEKSGIIKERVPLVTGERKREALKVMEDVARKKSSRMYVIDKDFS 239 (442)
T ss_dssp TTCGGGGC-CCSCEEECCCCC-------CCHHHHHHHHGGGCCTTCCEEECCCCHHHHHHHHHHHHHHTCCEEEBTTTBE
T ss_pred CccccccC-CCCEEEECCccHhhhhhhCcCHHHHHHHHHhhccCCccEEEcCCChHHHHHHHHHHHHcCCcEEEeCccee
Confidence 99999998 69999999999999999999999999999999999999999999998888888878777777766542 11
Q ss_pred h--------h---------hhhcccccCcchhhHhhHHHHHHHHH--HHHHhcCCCcccccCCCCCCCcHHHHHHHHhhC
Q 007911 264 I--------E---------KLKRLELSLSGDHQLVNAGLAVSLSE--CWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTA 324 (585)
Q Consensus 264 ~--------~---------~~~~~~l~L~G~hq~~Na~lAia~a~--~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~ 324 (585)
. . .+..+.++++|.||++|+++|++++. .+ | ..++.+.+||+++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~~~~~~l----g-------------i~~~~i~~~L~~~ 302 (442)
T 1o5z_A 240 VKVKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVALKTLEATGL----P-------------LSEKAIREGLKNA 302 (442)
T ss_dssp EEEEECCTTCEEEEEESSSEEEEEEESSCSTHHHHHHHHHHHHHHHHCC----C-------------CCHHHHHHHHHHC
T ss_pred eeccccccCCceEEEeccccccccccCCCcHhHHHHHHHHHHHHHHhhc----C-------------CCHHHHHHHHHhC
Confidence 0 0 01146788999999999999999998 66 6 2478899999999
Q ss_pred CCCCcEEEEecccCCCCCCCccccCCCCeEEEEecCCCHHHHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhc
Q 007911 325 HLLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRN 404 (585)
Q Consensus 325 ~~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilDgAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 404 (585)
.||||||++... +..+|+|+||||+|+++++++++...
T Consensus 303 ~~~gR~e~~~~~---------------~~~viiD~AhNp~s~~~~l~~l~~~~--------------------------- 340 (442)
T 1o5z_A 303 KNLGRFEILEKN---------------GKMYILDGAHNPHGAESLVRSLKLYF--------------------------- 340 (442)
T ss_dssp CCTTSSEEEEET---------------TEEEEECCCCSHHHHHHHHHHHHHHC---------------------------
T ss_pred CCCCceEEEEcC---------------CCeEEEECCcCHHHHHHHHHHHHHhC---------------------------
Confidence 999999999753 36799999999999999999997651
Q ss_pred cccccccccccccccCccEEEEEecCCCCChhhhhHHHHHHhhhcCCCccEEEEeCCCcccccccCCCCccCCCccccch
Q 007911 405 GYIGHKMEKTKHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDL 484 (585)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~ilvFg~~~~Rd~~~ll~~l~~~~~~~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (585)
+.+++++|||++++||...+++.+.+ .+|.+++++.. +.+. .+.
T Consensus 341 --------------~~~~~i~V~g~~~dkd~~~~~~~l~~-------~~d~vi~~~~~--------~~r~----~~~--- 384 (442)
T 1o5z_A 341 --------------NGEPLSLVIGILDDKNREDILRKYTG-------IFERVIVTRVP--------SPRM----KDM--- 384 (442)
T ss_dssp --------------TTCCEEEEECCCTTSCHHHHHGGGTT-------TCSEEEECCCS--------STTC----CCH---
T ss_pred --------------CCCCEEEEEecCCCCCHHHHHHHHHh-------hCCEEEEECCC--------CCCC----CCH---
Confidence 23478999999999999877655422 47889888743 1111 111
Q ss_pred hHHHHHHHHHHHhhcCCCCcccccccccccccCCCccccccCCCCCCCCcccCccceecCCHHHHHHHHHhhhhcCCCCc
Q 007911 485 SWQFSLQRLWERIIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIR 564 (585)
Q Consensus 485 ~~q~~~~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~ai~~~~~~~~~~~~~~ 564 (585)
..+++.++... ..+.+++++++|++.+ .
T Consensus 385 ---~~i~~~~~~~~---------------------------------------~~~~~~~~~~~Ai~~a----~------ 412 (442)
T 1o5z_A 385 ---NSLVDMAKKFF---------------------------------------KNVEVIEDPLEAIEST----E------ 412 (442)
T ss_dssp ---HHHHHHHHHHC---------------------------------------SCCEECSSHHHHHHTC----C------
T ss_pred ---HHHHHHHHhcC---------------------------------------CCceecCCHHHHHHhC----C------
Confidence 11233233210 0245778999999865 1
Q ss_pred ceEEEeCchhchHhHHhhhc
Q 007911 565 VQVLVTGSLHLVGDVLKLLK 584 (585)
Q Consensus 565 ~~VlVTGSlhLVG~~l~~l~ 584 (585)
--|||+||++++|++++.|+
T Consensus 413 d~VLv~GS~~~~~~~~~~l~ 432 (442)
T 1o5z_A 413 RATVVTGSLFLVGYVREFLT 432 (442)
T ss_dssp SEEEEESCHHHHHHHHHHHH
T ss_pred CEEEEEeeHHHHHHHHHHHH
Confidence 15999999999999998874
No 5
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=100.00 E-value=2.4e-65 Score=552.21 Aligned_cols=393 Identities=27% Similarity=0.337 Sum_probs=316.3
Q ss_pred CcHHHHHHHHHhhhhhhhcCCCccccccCCChHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCe
Q 007911 26 SSYENAMQALSSLITRQKRGEQSHIAGRYGKLQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRT 105 (585)
Q Consensus 26 ~~y~~a~~~L~~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~kv 105 (585)
++|+++++||..+..+ +..++|+||+++|++||+ |+.++++|||||||||||||+||++||+++|++|
T Consensus 11 ~~~~~~~~~~~~~~~~----------~~~~gl~r~~~~l~~lg~--p~~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~~ 78 (422)
T 1w78_A 11 SPLASWLSYLENLHSK----------TIDLGLERVSLVAARLGV--LKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKV 78 (422)
T ss_dssp SCHHHHHHHHTTSSSS----------SCCCCSHHHHHHHHHHTC--SSCSSEEEEEECSSCHHHHHHHHHHHHHHTTCCE
T ss_pred hhHHHHHHHHHhcccC----------CCCCCHHHHHHHHHHcCC--cccCCcEEEEeCCcChHHHHHHHHHHHHHCCCCE
Confidence 4799999998876322 123789999999999994 7788999999999999999999999999999999
Q ss_pred EEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeecCCCC
Q 007911 106 GLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGE 185 (585)
Q Consensus 106 Gl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~ps~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr 185 (585)
|+|+|||+.++||||+|||.+++++.|.++++++...+. + ..+++||++|++||.+|.+.++|++|+|||+||+
T Consensus 79 g~~~s~~l~~~neri~i~g~~i~~~~~~~~~~~v~~~~~-----~-~~~t~~e~~t~~a~~~~~~~~~d~~VlEvgl~~~ 152 (422)
T 1w78_A 79 GVYSSPHLVRYTERVRVQGQELPESAHTASFAEIESARG-----D-ISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGR 152 (422)
T ss_dssp EEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHTT-----T-CCCCHHHHHHHHHHHHHHHHTCSEEEEECSSSST
T ss_pred EEECCCCcCcCceEEEECCEECCHHHHHHHHHHHHHHhc-----c-CCCChHHHHHHHHHHHHHHcCCCEEEEecCCCcc
Confidence 999999999999999999999999999999987765432 1 2479999999999999999999999999999999
Q ss_pred ccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccCCCCcEEeeCCchHHHHHHHHHHHhcCccEEEecc-cch
Q 007911 186 KDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAP-LDI 264 (585)
Q Consensus 186 ~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~g~~aV~~~qd~~~~~vl~~~a~~~~~~l~~~~~-~~~ 264 (585)
+|+||++ +|+++|||||+.||+|+||+|+|+|+++|++||+++.++|++.+++. .++.+.+.+.+++++.++. +..
T Consensus 153 ~d~t~~~-~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~~~~~~v~~~d~~~--~~~~~~a~~~~~~~~~~g~~~~~ 229 (422)
T 1w78_A 153 LDATNIV-DADVAVVTSIALDHTDWLGPDRESIGREKAGIFRSEKPAIVGEPEMP--STIADVAQEKGALLQRRGVEWNY 229 (422)
T ss_dssp TSGGGGS-CCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCCTTSEEEECCSSCC--HHHHHHHHHHTCEEEEBTTTBEE
T ss_pred cccccCC-CCCEEEECCcChhhhhhhCCCHHHHHHHHHhhccCCCcEEEcCccHH--HHHHHHHHHcCCceEEeCcceee
Confidence 9999998 69999999999999999999999999999999999999999876653 3555666666667666542 110
Q ss_pred ---------hh-hhc-ccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCCCCCcEEEE
Q 007911 265 ---------EK-LKR-LELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAHLLGRAQIV 333 (585)
Q Consensus 265 ---------~~-~~~-~~l~L~G~hq~~Na~lAia~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~~pGR~E~i 333 (585)
.. ... +.++++ .||++|+++|++++..+ +. . ..++.+.+||+++.||||||++
T Consensus 230 ~~~~~~~~~~~~~~~~~~l~l~-~hn~~Na~aAia~~~~~----~~-g----------i~~~~i~~~L~~~~~~gR~e~~ 293 (422)
T 1w78_A 230 SVTDHDWAFSDAHGTLENLPLP-LVPQPNAATALAALRAS----GL-E----------VSENAIRDGIASAILPGRFQIV 293 (422)
T ss_dssp EECSSCEEEEETTEEEEEECCC-SSCHHHHHHHHHHHHHH----TC-C----------CCHHHHHHHHHHCCCTTSSEEE
T ss_pred eccCceEEEecCCcccccCCch-HHHHHHHHHHHHHHHHh----CC-C----------CCHHHHHHHHHhCCCCceEEEE
Confidence 00 001 467888 99999999999999875 31 0 2368899999999999999999
Q ss_pred ecccCCCCCCCccccCCCCeEEEEecCCCHHHHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhcccccccccc
Q 007911 334 YDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEK 413 (585)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~vilDgAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (585)
... ..+|+||||||+|+++++++++...
T Consensus 294 ~~~----------------~~~i~D~Ahnp~s~~~~l~~l~~~~------------------------------------ 321 (422)
T 1w78_A 294 SES----------------PRVIFDVAHNPHAAEYLTGRMKALP------------------------------------ 321 (422)
T ss_dssp ETT----------------TEEEEECCCSHHHHHHHHHHHHHSC------------------------------------
T ss_pred eCC----------------CeEEEECCCCHHHHHHHHHHHHHhC------------------------------------
Confidence 753 4799999999999999999997641
Q ss_pred ccccccCccEEEEEecCCCCChhhhhHHHHHHhhhcCCCccEEEEeCCCcccccccCCCCccCCCccccchhHHHHHHHH
Q 007911 414 TKHANKISKQILLFNCMEARHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQFSLQRL 493 (585)
Q Consensus 414 ~~~~~~~~~~ilvFg~~~~Rd~~~ll~~l~~~~~~~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 493 (585)
+.+++++|||++++||...+++.+.+ .+|.+++++... .+ ..+. ..+.
T Consensus 322 -----~~~~~i~V~g~~~~kd~~~~~~~l~~-------~~d~vi~~~~~~--------~r----~~~~------~~l~-- 369 (422)
T 1w78_A 322 -----KNGRVLAVIGMLHDKDIAGTLAWLKS-------VVDDWYCAPLEG--------PR----GATA------EQLL-- 369 (422)
T ss_dssp -----SCSCEEEEECCBTTSCHHHHHHHHHT-------TCSEEEECCCCS--------SS----BCCH------HHHH--
T ss_pred -----CCCCEEEEEeccCCCCHHHHHHHHHh-------hCCEEEEECCCC--------CC----CCCH------HHHH--
Confidence 13478999999999998877666532 478888887541 11 1111 1122
Q ss_pred HHHhhcCCCCcccccccccccccCCCccccccCCCCCCCCcccCccceecCCHHHHHHHHHhhhhcCCCCcceEEEeCch
Q 007911 494 WERIIHGADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQVLVTGSL 573 (585)
Q Consensus 494 w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~ai~~~~~~~~~~~~~~~~VlVTGSl 573 (585)
+.+. .+.++++.++|++++.+.++. .--|||+||+
T Consensus 370 -~~~~----------------------------------------~~~~~~~~~~ai~~a~~~~~~----~d~vLv~GS~ 404 (422)
T 1w78_A 370 -EHLG----------------------------------------NGKSFDSVAQAWDAAMADAKA----EDTVLVCGSF 404 (422)
T ss_dssp -HHHS----------------------------------------SCEECSSHHHHHHHHHHHCCT----TCEEEEESSH
T ss_pred -HHHh----------------------------------------hcccCCCHHHHHHHHHHhcCC----CCEEEEEeeH
Confidence 2221 134678999999999876543 2259999999
Q ss_pred hchHhHHhhhc
Q 007911 574 HLVGDVLKLLK 584 (585)
Q Consensus 574 hLVG~~l~~l~ 584 (585)
|+||.+++.|+
T Consensus 405 ~~~~~~~~~l~ 415 (422)
T 1w78_A 405 HTVAHVMEVID 415 (422)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 6
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=9.7e-50 Score=439.42 Aligned_cols=292 Identities=16% Similarity=0.122 Sum_probs=226.3
Q ss_pred ChHHHHHHHHHhC---CCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHH
Q 007911 56 KLQRMSMYLKILG---LEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKF 132 (585)
Q Consensus 56 ~l~~~~~~L~~Lg---~~~p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f 132 (585)
.+++++++|..|. +++|+.++++||||||||||||++||++||++.|+++|+++|++ ..+++..++.
T Consensus 85 ~V~d~~~aL~~la~~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gs~~-------~~i~~~~~~~--- 154 (498)
T 1e8c_A 85 YLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVG-------NGLLGKVIPT--- 154 (498)
T ss_dssp EETTHHHHHHHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTE-------EEETTCCBCC---
T ss_pred EECCHHHHHHHHHHHHhCCCcccCeEEEEeCCcChHHHHHHHHHHHHhCCCCEEEECCCC-------cccCCeeeec---
Confidence 3667788888776 45788899999999999999999999999999999999999998 6677654421
Q ss_pred HHHHHHHHHhhhhhccCCCCCCCHHHHHHHHH-HHHhhhCCCcEEEEeecC----CCCccccccccCCcEEEEcCCCccc
Q 007911 133 LFYFWECWHLLRENVTEDLPMPPLFQFLTVLA-FKIFVCEQVDVAIIEVGL----GGEKDSTNVIKEPVVCGVTSLGMDH 207 (585)
Q Consensus 133 ~~~f~~v~~~l~~~~~~~~~~ps~Fe~lTllA-~~~F~~~~vd~aVlEvG~----gGr~D~Tnvi~~P~vavITNIg~DH 207 (585)
.+++|+.+++++ |..|.+.++|++|||+|+ +||+|.++ |+++|||||+.||
T Consensus 155 --------------------~~t~~~~~~l~~~l~~~~~~~~d~~VlEvgs~~l~~~rl~~~~----p~vaViTNI~~DH 210 (498)
T 1e8c_A 155 --------------------ENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALK----FAASVFTNLSRDH 210 (498)
T ss_dssp --------------------SSSSCCHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTTTCB----CSEEEECCCCSCC
T ss_pred --------------------CCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCchhhcccccccC----CCEEEEeCCChhh
Confidence 134455555543 778889999999999997 57899854 7999999999999
Q ss_pred ccccCCCHHHHHHHHhcccCC--CCcEEeeCCchHHHHHHHHHHHhcCccEEEec--------c--------------cc
Q 007911 208 MELLGNTLNDIAFHKAGIFKP--QIPAFTVPQLSEAMSVLQDRALELMVPLEVAA--------P--------------LD 263 (585)
Q Consensus 208 ld~lG~Tle~IA~~KagI~k~--g~~aV~~~qd~~~~~vl~~~a~~~~~~l~~~~--------~--------------~~ 263 (585)
+|+|| |+|+|+++|++||+. ++++|+|.||+.+..++... ...+++++.++ + |.
T Consensus 211 ld~~g-t~e~ia~aK~~i~~~~~~~~~V~n~dd~~~~~~~~~~-~~~~~~v~~~g~~~~~~~~d~~~~~~~~~~~g~~f~ 288 (498)
T 1e8c_A 211 LDYHG-DMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKL-PDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIR 288 (498)
T ss_dssp HHHHS-SHHHHHHHHHHHHHTSBCCEEEEETTSHHHHHHHTTC-TTCEEEESSSCCCTTTCSEEEEEEEEEECSSCEEEE
T ss_pred hhccC-CHHHHHHHHHHHhccCCCCeEEEECCCHHHHHHHHhh-hccCCcEEEEecCCCCCcCCEEEEEEEEcCCceEEE
Confidence 99999 999999999999985 67899999998776554321 11111221111 0 11
Q ss_pred hh---hhhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCC
Q 007911 264 IE---KLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLV 339 (585)
Q Consensus 264 ~~---~~~~~~l~L~G~hq~~Na~lAia~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~ 339 (585)
.. ....+.++++|.||++|+++|++++..+ | ..++.|.+||+++. ||||||++...
T Consensus 289 ~~~~~~~~~~~l~l~G~hnv~NalaAia~~~~l----G-------------i~~~~i~~~L~~~~~~~gR~e~v~~~--- 348 (498)
T 1e8c_A 289 FSSSWGDGEIESHLMGAFNVSNLLLALATLLAL----G-------------YPLADLLKTAARLQPVCGRMEVFTAP--- 348 (498)
T ss_dssp EEETTCCEEEEECSCSHHHHHHHHHHHHHHHHT----T-------------CCHHHHHHHGGGCCCCTTSSEEECCT---
T ss_pred EEECCceEEEEecCCcHHHHHHHHHHHHHHHHc----C-------------CCHHHHHHHHHhCCCCCCceEEEEcC---
Confidence 00 0114678999999999999999999887 7 24789999999998 99999999754
Q ss_pred CCCCCccccCCCCeEEEEecCCCHHHHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhcccccccccccccccc
Q 007911 340 PNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANK 419 (585)
Q Consensus 340 ~~~~~~~~~~~~~~~vilDgAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (585)
++..||+||||||+||++++++|+.. +
T Consensus 349 -----------~~~~vi~DyahnP~s~~a~l~~l~~~------------------------------------------~ 375 (498)
T 1e8c_A 349 -----------GKPTVVVDYAHTPDALEKALQAARLH------------------------------------------C 375 (498)
T ss_dssp -----------TSCEEEEECCCSHHHHHHHHHHHHHT------------------------------------------C
T ss_pred -----------CCCEEEEECCCCHHHHHHHHHHHHhh------------------------------------------C
Confidence 24689999999999999999999764 1
Q ss_pred CccEEEEEecCCCCChh--hhhHHHHHHhhhcCCCccEEEEeCCC
Q 007911 420 ISKQILLFNCMEARHPQ--VLLPRLVSTCASSGTHFSKALFVPSV 462 (585)
Q Consensus 420 ~~~~ilvFg~~~~Rd~~--~ll~~l~~~~~~~~~~fd~~if~~~~ 462 (585)
.+++++||||+++||.. .++..+... .+|.++++++.
T Consensus 376 ~~r~i~V~G~g~dr~~~~~~~~~~~~~~------~~d~vi~~~~~ 414 (498)
T 1e8c_A 376 AGKLWCVFGCGGDRDKGKRPLMGAIAEE------FADVAVVTDDN 414 (498)
T ss_dssp SSCEEEEECCCSSSCSTHHHHHHHHHHH------HCSEEEECCSC
T ss_pred CCCEEEEECCCCCcchhHHHHHHHHHHh------CCCEEEEcCCC
Confidence 24789999999999874 344444321 36777777543
No 7
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=100.00 E-value=1.5e-48 Score=433.69 Aligned_cols=351 Identities=21% Similarity=0.228 Sum_probs=254.8
Q ss_pred hHHHHHHHHHhC---CCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHH
Q 007911 57 LQRMSMYLKILG---LEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFL 133 (585)
Q Consensus 57 l~~~~~~L~~Lg---~~~p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~ 133 (585)
+++++++|..|+ +++|+.++++||||||||||||++||++||++.|+++|+++|. ++.+||..++..
T Consensus 124 v~d~~~aL~~la~~~~~~p~~~~~vI~VTGTnGKTTT~~ml~~iL~~~G~~~g~~gs~-------~~~i~~~~~~~~--- 193 (535)
T 2wtz_A 124 HPAPRGVLGGLAATVYGHPSERLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTI-------GIRVGGADLPSA--- 193 (535)
T ss_dssp CSSSHHHHHHHHHHHTTCGGGSSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSS-------CEEETTEEECCS---
T ss_pred ECCHHHHHHHHHHHHhcCccccceEEEeeCCCChHHHHHHHHHHHHHCCCCEEEECCc-------ceeECCEecccC---
Confidence 456677777775 4578888999999999999999999999999999999999984 589999877532
Q ss_pred HHHHHHHHhhhhhccCCCCCCCHHHHHHHHHH-HHhhhCCCcEEEEeecC----CCCccccccccCCcEEEEcCCCcccc
Q 007911 134 FYFWECWHLLRENVTEDLPMPPLFQFLTVLAF-KIFVCEQVDVAIIEVGL----GGEKDSTNVIKEPVVCGVTSLGMDHM 208 (585)
Q Consensus 134 ~~f~~v~~~l~~~~~~~~~~ps~Fe~lTllA~-~~F~~~~vd~aVlEvG~----gGr~D~Tnvi~~P~vavITNIg~DHl 208 (585)
+++|+..++.++ ..|.+.++|++|||+|+ +||+|.+ +|+++|||||+.||+
T Consensus 194 --------------------~tt~e~~~l~~~l~~~~~~~~d~~VlEvgs~~l~~~rl~~~----~p~vaViTNI~~DHl 249 (535)
T 2wtz_A 194 --------------------LTTPEAPTLQAMLAAMVERGVDTVVMEVSSHALALGRVDGT----RFAVGAFTNLSRDHL 249 (535)
T ss_dssp --------------------SSSCCHHHHHHHHHHHHHTTCCEEEEECCHHHHHTTTTTTC----CEEEEEECCCCSCCT
T ss_pred --------------------CccCcHHHHHHHHHHHHhCCCCEEEEECCCccccccccccC----CcCEEEEcCCChHHh
Confidence 234455565554 56788999999999997 5788884 589999999999999
Q ss_pred cccCCCHHHHHHHHhcccCCC-----CcEEeeCCchHHHHHHHHHHHh---c----Cc-cEEEe----c-c----cchh-
Q 007911 209 ELLGNTLNDIAFHKAGIFKPQ-----IPAFTVPQLSEAMSVLQDRALE---L----MV-PLEVA----A-P----LDIE- 265 (585)
Q Consensus 209 d~lG~Tle~IA~~KagI~k~g-----~~aV~~~qd~~~~~vl~~~a~~---~----~~-~l~~~----~-~----~~~~- 265 (585)
|+|| |+|+|+++|++||++. ..+|+|.||+....++.. +.. . .+ ++... . . |...
T Consensus 250 d~~g-s~e~ia~aK~~i~~~~~~~~~g~~Vln~Dd~~~~~~~~~-~~~v~~~g~~~~~~d~~~~~i~~~~~~g~~f~~~~ 327 (535)
T 2wtz_A 250 DFHP-SMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAAR-AADAITVSAADRPAHWRATDVAPTDAGGQQFTAID 327 (535)
T ss_dssp TTSS-SHHHHHHHHHTTTCTTSTTCCSEEEEECSSHHHHHHHHH-HSSCEEEESSSSCCSEEEEEEEEETTTEEEEEEEC
T ss_pred hhcC-CHHHHHHHHHHHhccccccCCCeEEEECCCHHHHHHHHh-cCCEEEEecCCCcCcEEEEEEEEcCCCCeEEEEEe
Confidence 9999 9999999999999843 578999999877665543 211 0 01 22110 0 0 1110
Q ss_pred --hh-hcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCCCCCcEEEEecccCCCCC
Q 007911 266 --KL-KRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAHLLGRAQIVYDISLVPNS 342 (585)
Q Consensus 266 --~~-~~~~l~L~G~hq~~Na~lAia~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~~pGR~E~i~~~~~~~~~ 342 (585)
.. ..+.++++|.||++|+++|++++..+ | ..++.|.+||+++.||||||++...
T Consensus 328 ~~~~~~~~~l~l~G~hnv~NalaAia~a~~l----G-------------i~~~~i~~~L~~~~~~gR~e~v~~~------ 384 (535)
T 2wtz_A 328 PAGVGHHIGIRLPGRYNVANCLVALAILDTV----G-------------VSPEQAVPGLREIRVPGRLEQIDRG------ 384 (535)
T ss_dssp TTSCEEEEEESCCSHHHHHHHHHHHHHHHHT----T-------------CCHHHHHHHHTTCCCTTSSEECCSS------
T ss_pred CCceEEEEEeCCCCHHHHHHHHHHHHHHHHc----C-------------CCHHHHHHHHHhCCCCCceEEEEcC------
Confidence 00 24678999999999999999999887 7 2478999999999999999998754
Q ss_pred CCccccCCCCeEEEEecCCCHHHHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhccccccccccccccccCcc
Q 007911 343 SGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISK 422 (585)
Q Consensus 343 ~~~~~~~~~~~~vilDgAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (585)
++.++|+||||||+|+++++++|+ . +.++
T Consensus 385 --------~~~~viiDyahNP~s~~aal~~l~-~------------------------------------------~~~r 413 (535)
T 2wtz_A 385 --------QGFLALVDYAHKPEALRSVLTTLA-H------------------------------------------PDRR 413 (535)
T ss_dssp --------CSSEEEEECCCSHHHHHHHHHTTC-C------------------------------------------SSSC
T ss_pred --------CCcEEEEECCCCHHHHHHHHHHhh-C------------------------------------------CCCc
Confidence 346799999999999999999775 3 1247
Q ss_pred EEEEEecCCCCChhh--hhHHHHHHhhhcCCCccEEEEeCCCcccccccCCCCccCCCccccchhHHHHHHHHHHHhhcC
Q 007911 423 QILLFNCMEARHPQV--LLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQFSLQRLWERIIHG 500 (585)
Q Consensus 423 ~ilvFg~~~~Rd~~~--ll~~l~~~~~~~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~w~~l~~~ 500 (585)
+|+||||+++||... ++..+.. . .+|.++++++.. ..++.. .+.+.+..+
T Consensus 414 ~i~V~G~~gdr~~~~~~~~~~~a~---~---~~d~vi~~~~~~-------------r~e~~~---------~i~~~i~~g 465 (535)
T 2wtz_A 414 LAVVFGAGGDRDPGKRAPMGRIAA---Q---LADLVVVTDDNP-------------RDEDPT---------AIRREILAG 465 (535)
T ss_dssp EEEEECCCTTSCGGGHHHHHHHHH---H---HCSEEEECCSCC-------------TTSCHH---------HHHHHHHHH
T ss_pred EEEEECCCCccchhhHHHHHHHHH---h---cCCEEEEcCCCC-------------CCCCHH---------HHHHHHHhh
Confidence 899999999998753 4444432 1 367777775431 011110 111122110
Q ss_pred CCCcccccccccccccCCCccccccCCCCCCCCcccCccceecCCHHHHHHHHHhhhhcCCCCcceEEEeCchhchHhH
Q 007911 501 ADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQVLVTGSLHLVGDV 579 (585)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~ai~~~~~~~~~~~~~~~~VlVTGSlhLVG~~ 579 (585)
.... . . ...+.++++.++|++++.+.++. .--|||+||.|.++..
T Consensus 466 ~~~~-----------------------~--~-----~~~~~~~~d~~~Ai~~a~~~a~~----gD~VLv~GsGhe~~q~ 510 (535)
T 2wtz_A 466 AAEV-----------------------G--G-----DAQVVEIADRRDAIRHAVAWARP----GDVVLIAGKGHETGQR 510 (535)
T ss_dssp HTTC-----------------------C--------CCEEEECCSHHHHHHHHHHHCCT----TCEEEEESCTTCCCEE
T ss_pred hhhc-----------------------C--C-----CCcEEEECCHHHHHHHHHHhCCC----CCEEEEEeCCCcceEE
Confidence 0000 0 0 01356789999999999877643 2269999999998654
No 8
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=3.3e-45 Score=398.79 Aligned_cols=279 Identities=20% Similarity=0.268 Sum_probs=202.6
Q ss_pred ChHHHHHHHHHhCCC-CcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHH
Q 007911 56 KLQRMSMYLKILGLE-DRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLF 134 (585)
Q Consensus 56 ~l~~~~~~L~~Lg~~-~p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~ 134 (585)
.+++++++|.+|+.. ....++++||||||||||||++||++||+++| +++ +|+ + +++++|. .|
T Consensus 79 ~v~~~~~~l~~la~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g-~~~-~t~-g--~~n~~ig---~p-------- 142 (452)
T 1gg4_A 79 IVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAAILSQCG-NTL-YTA-G--NLNNDIG---VP-------- 142 (452)
T ss_dssp EESCHHHHHHHHHHHHHHHSCCEEEEEECSSCHHHHHHHHHHHHTTTS-CEE-ECC-T--TCCSTTH---HH--------
T ss_pred EECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHHHHhcC-CEe-ecc-c--cccCCcc---hh--------
Confidence 478899999999843 11136799999999999999999999999999 565 443 3 4555441 00
Q ss_pred HHHHHHHhhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeecCCCCcc---ccccccCCcEEEEcCCCccccccc
Q 007911 135 YFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKD---STNVIKEPVVCGVTSLGMDHMELL 211 (585)
Q Consensus 135 ~f~~v~~~l~~~~~~~~~~ps~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D---~Tnvi~~P~vavITNIg~DHld~l 211 (585)
+++|+ .+.++|++|||+|++++.| .++++ +|+++|||||+.||+|+|
T Consensus 143 -------------------~t~~~----------~~~~~d~~VlE~g~~~~~~~~~~~~~~-~p~vaviTNI~~DHld~~ 192 (452)
T 1gg4_A 143 -------------------MTLLR----------LTPEYDYAVIELGANHQGEIAWTVSLT-RPEAALVNNLAAAHLEGF 192 (452)
T ss_dssp -------------------HHHTT----------CCTTCSEEEEECCCSSSSHHHHHHHHH-CCSEEEECCCC-------
T ss_pred -------------------HHHHc----------CCCCCcEEEEEeCCCCcchHHHHhCcc-CCCEEEECCCChHHhhhc
Confidence 11111 1568999999999999988 78876 799999999999999999
Q ss_pred CCCHHHHHHHHhcccC---CCCcEEeeCCchHHHHHHHHHHHhcCccEEEecc------cc--------------hh---
Q 007911 212 GNTLNDIAFHKAGIFK---PQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAP------LD--------------IE--- 265 (585)
Q Consensus 212 G~Tle~IA~~KagI~k---~g~~aV~~~qd~~~~~vl~~~a~~~~~~l~~~~~------~~--------------~~--- 265 (585)
| |+|+|+++|++||+ ++.++|+|.||+.+..+++ +.. +++++.++. +. ..
T Consensus 193 g-t~e~~~~aK~~i~~~~~~~~~~V~n~dd~~~~~~~~--~~~-~~~~~~~g~~~~~~d~~~~~~~~~~~g~~~~~~~~~ 268 (452)
T 1gg4_A 193 G-SLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQS--VIG-SRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPT 268 (452)
T ss_dssp --CHHHHHHHHHGGGGGCCTTCEEEEETTBCCHHHHHH--HHT-TSEEEEECSSCTTCSBEEEEEEECSSSEEEEEEETT
T ss_pred C-CHHHHHHHHHHHHhhcccCCEEEEeCCcHHHHHHHH--hhc-CCCEEEEeCCCCCCcEEEEEEEEcCCceEEEEEECC
Confidence 9 99999999999998 6788999999987765432 222 344444321 10 00
Q ss_pred hhhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCC
Q 007911 266 KLKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSG 344 (585)
Q Consensus 266 ~~~~~~l~L~G~hq~~Na~lAia~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~ 344 (585)
....+.++++|.||++|+++|++++..+ | ..++.|.++|++|. ||||||++...
T Consensus 269 ~~~~~~l~l~G~hn~~NalaA~a~~~~l----g-------------i~~~~i~~~L~~~~~~~gR~e~~~~~-------- 323 (452)
T 1gg4_A 269 GSVDVLLPLPGRHNIANALAAAALSMSV----G-------------ATLDAIKAGLANLKAVPGRLFPIQLA-------- 323 (452)
T ss_dssp EEEEEEECSSSTHHHHHHHHHHHHHHHT----T-------------CCHHHHHHHHTTCCCCTTSSEEEEEE--------
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHc----C-------------CCHHHHHHHHHhCCCCCCCceEEECC--------
Confidence 0014678999999999999999999887 7 24789999999996 99999999764
Q ss_pred ccccCCCCeEEEEe-cCCCHHHHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhccccccccccccccccCccE
Q 007911 345 LFENSSGELIFYLD-GAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQ 423 (585)
Q Consensus 345 ~~~~~~~~~~vilD-gAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (585)
++..||+| |||||+|+++++++++.. + +++
T Consensus 324 ------~~~~vidDsyahnp~s~~~~l~~l~~~------------------------------------------~-~~~ 354 (452)
T 1gg4_A 324 ------ENQLLLDDSYNANVGSMTAAVQVLAEM------------------------------------------P-GYR 354 (452)
T ss_dssp ------TTEEEEECCSCCCHHHHHHHHHHHHHS------------------------------------------S-SEE
T ss_pred ------CCcEEEEeCCCCCHHHHHHHHHHHHhc------------------------------------------c-CCE
Confidence 35789999 999999999999988754 2 468
Q ss_pred EEEEecC---CCCChhhhhHHHHHHhhhcCCCccEEEEeCC
Q 007911 424 ILLFNCM---EARHPQVLLPRLVSTCASSGTHFSKALFVPS 461 (585)
Q Consensus 424 ilvFg~~---~~Rd~~~ll~~l~~~~~~~~~~fd~~if~~~ 461 (585)
++||||+ |+++ ....+.+.+.+... .+|.++++..
T Consensus 355 i~V~G~~~e~g~~~-~~~~~~~~~~~~~~--~~d~vi~~g~ 392 (452)
T 1gg4_A 355 VLVVGDMAELGAES-EACHVQVGEAAKAA--GIDRVLSVGK 392 (452)
T ss_dssp EEEECCCCCCTTHH-HHHHHHHHHHHHHH--TCSEEEEESS
T ss_pred EEEECCccccCChh-HHHHHHHHHHHHHc--CCCEEEEECc
Confidence 9999998 4442 23334455544321 4788888753
No 9
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=100.00 E-value=4.9e-45 Score=397.35 Aligned_cols=280 Identities=15% Similarity=0.126 Sum_probs=207.3
Q ss_pred ChHHHHHHHHHhCCC-CcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHH
Q 007911 56 KLQRMSMYLKILGLE-DRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLF 134 (585)
Q Consensus 56 ~l~~~~~~L~~Lg~~-~p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~ 134 (585)
.+++++++|..|+.. ....++++||||||||||||++||++||+++|+ + ++||| +++++|. .|
T Consensus 79 ~v~~~~~al~~la~~~~~~~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~-~--~~s~g--~~n~~ig---~p-------- 142 (454)
T 2am1_A 79 LVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAHLLSTRYK-T--YKTQG--NYNNEIG---LP-------- 142 (454)
T ss_dssp ECSCHHHHHHHHHHHHHHHHCCEEEEEECCCSSSCHHHHHHHHHTTTSC-E--EECCT--TCCSTTH---HH--------
T ss_pred EECCHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhcCC-E--eecCC--ccCcccc---hH--------
Confidence 357789999988842 111267999999999999999999999999995 3 78898 6666541 00
Q ss_pred HHHHHHHhhhhhccCCCCCCCHHHHHHHHHHHHhhhCCCcEEEEeecCCCCcc---ccccccCCcEEEEcCCCccccccc
Q 007911 135 YFWECWHLLRENVTEDLPMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKD---STNVIKEPVVCGVTSLGMDHMELL 211 (585)
Q Consensus 135 ~f~~v~~~l~~~~~~~~~~ps~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D---~Tnvi~~P~vavITNIg~DHld~l 211 (585)
+++|+ .+.++|++|||+|++|+.| .++++ +|+++|||||+.||+|+|
T Consensus 143 -------------------~t~~~----------~~~~~d~~VlE~g~~~~~~~~~~~~~~-~p~vaviTNi~~DHld~~ 192 (454)
T 2am1_A 143 -------------------YTVLH----------MPEGTEKLVLEMGQDHLGDIHLLSELA-RPKTAIVTLVGEAHLAFF 192 (454)
T ss_dssp -------------------HHHHT----------CCTTCCEEEEECCCSSTTHHHHHHHHH-CCSEEEECCCCCSSCTTC
T ss_pred -------------------HHHhc----------CCCCCcEEEEEcCCCCcchHHHHhCcc-CCCEEEEcCCchHhhhhc
Confidence 11221 2568999999999999988 78876 799999999999999999
Q ss_pred CCCHHHHHHHHhcccC---CCCcEEeeCCchHHHHHHHHHHHhcCccEEEecc-----c---ch--h----hhh----cc
Q 007911 212 GNTLNDIAFHKAGIFK---PQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAP-----L---DI--E----KLK----RL 270 (585)
Q Consensus 212 G~Tle~IA~~KagI~k---~g~~aV~~~qd~~~~~vl~~~a~~~~~~l~~~~~-----~---~~--~----~~~----~~ 270 (585)
| |+|+|+++|++||+ ++.++|+|.|| .... .+.. +++++.++. + .. . .+. .+
T Consensus 193 g-t~e~~a~aK~~i~~~~~~~~~~V~n~dd-~~~~----~~~~-~~~~~~~g~~~~~d~~~i~~~~~~~~~~~~~~~~~~ 265 (454)
T 2am1_A 193 K-DRSEIAKGKMQIADGMASGSLLLAPADP-IVED----YLPI-DKKVVRFGQGAELEITDLVERKDSLTFKANFLEQAL 265 (454)
T ss_dssp C-CHHHHHHHHGGGGTTCCTTCEEEEESCG-GGGG----GCCS-SSEEEEESTTSSBCEEEEEECSSCEEEEETTCSSEE
T ss_pred C-CHHHHHHHHHHHHhhcccCCEEEEEcHH-HHHH----HHhc-CCcEEEEeCCCCCceeeeEEeCCceEEEEEecCcEE
Confidence 9 99999999999998 67889999887 5432 2222 344544431 1 00 0 011 46
Q ss_pred cccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccC
Q 007911 271 ELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENS 349 (585)
Q Consensus 271 ~l~L~G~hq~~Na~lAia~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~ 349 (585)
.++++|.||++|+++|++++..+ | ..++.+.++|+++. ||||||++...
T Consensus 266 ~l~l~G~hn~~NalaA~a~~~~l----g-------------i~~~~i~~~L~~~~~~~gR~e~~~~~------------- 315 (454)
T 2am1_A 266 DLPVTGKYNATNAMIASYVALQE----G-------------VSEEQIRLAFQHLELTRNRTEWKKAA------------- 315 (454)
T ss_dssp EESSCCHHHHHHHHHHHHHHHHT----T-------------CCHHHHHHHGGGCCCCCCCSCEECCT-------------
T ss_pred EecCCCHHHHHHHHHHHHHHHHc----C-------------CCHHHHHHHHHhCCCccCCeeEEECC-------------
Confidence 78999999999999999999887 6 24789999999998 99999999754
Q ss_pred CCCeEEEEe-cCCCHHHHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhccccccccccccccccCccEEEEEe
Q 007911 350 SGELIFYLD-GAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFN 428 (585)
Q Consensus 350 ~~~~~vilD-gAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg 428 (585)
++..||.| |||||+|+++++++|+.... ...+++++|||
T Consensus 316 -~~~~iiDDsyahnp~s~~~~l~~l~~~~~---------------------------------------~~~~~~i~V~G 355 (454)
T 2am1_A 316 -NGADILSDVYNANPTAMKLILETFSAIPA---------------------------------------NEGGKKIAVLA 355 (454)
T ss_dssp -TTCEEEEECSCCSHHHHHHHHHHHTTSCC---------------------------------------CSSCEEEEEEE
T ss_pred -CCeEEEEeCCCCCHHHHHHHHHHHHhccc---------------------------------------ccCCCEEEEEC
Confidence 24566666 89999999999998865410 00157899999
Q ss_pred cC---CCCChhhhhHHHHHHhhhcCCCccEEEEeCC
Q 007911 429 CM---EARHPQVLLPRLVSTCASSGTHFSKALFVPS 461 (585)
Q Consensus 429 ~~---~~Rd~~~ll~~l~~~~~~~~~~fd~~if~~~ 461 (585)
++ |+| .....+.+.+.+.. ..+|.++++.+
T Consensus 356 ~~~e~G~~-~~~~~~~~~~~~~~--~~~d~vi~~g~ 388 (454)
T 2am1_A 356 DMKELGDQ-SVQLHNQMILSLSP--DVLDIVIFYGE 388 (454)
T ss_dssp CCCCCCTT-HHHHHHHGGGGCCT--TTCSEEEEEES
T ss_pred CchhcCcH-HHHHHHHHHHHHHh--cCCCEEEEECc
Confidence 97 333 33334444443321 24788888764
No 10
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=100.00 E-value=9.4e-43 Score=381.55 Aligned_cols=323 Identities=17% Similarity=0.174 Sum_probs=227.5
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCCC
Q 007911 76 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPP 155 (585)
Q Consensus 76 l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~ps 155 (585)
.++|||||||||||||+||++||+++|++ || +.++|...+... +
T Consensus 118 ~~vI~VTGTnGKTTTt~ml~~iL~~~G~~------p~-------~~igg~~~~~~~----------------------~- 161 (475)
T 1p3d_A 118 RHGIAVAGTHGKTTTTAMISMIYTQAKLD------PT-------FVNGGLVKSAGK----------------------N- 161 (475)
T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHTTCC------CE-------EEEEEEETTTTE----------------------E-
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhCCCC------CE-------EEECCccccccc----------------------c-
Confidence 58999999999999999999999999986 33 345555442110 0
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhccc---CCCCcE
Q 007911 156 LFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIF---KPQIPA 232 (585)
Q Consensus 156 ~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~---k~g~~a 232 (585)
....++|++|+|+| ++|+++...+|+++|||||++||+|+||+|+|+|+++|+.|| +++.++
T Consensus 162 ------------~~~~~~d~~VlE~~---~~~~~~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~ 226 (475)
T 1p3d_A 162 ------------AHLGASRYLIAEAD---ESDASFLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLA 226 (475)
T ss_dssp ------------EECCSSSEEEEECC---CTTSGGGGCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEE
T ss_pred ------------cccCCCCEEEEEec---CCcCccccccCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHhhCCCCCEE
Confidence 01247899999995 678888766899999999999999999779999999998876 467889
Q ss_pred EeeCCchHHHHHHHHHHHhcCccEEEecc-------------------cchh--h--hhcccccCcchhhHhhHHHHHHH
Q 007911 233 FTVPQLSEAMSVLQDRALELMVPLEVAAP-------------------LDIE--K--LKRLELSLSGDHQLVNAGLAVSL 289 (585)
Q Consensus 233 V~~~qd~~~~~vl~~~a~~~~~~l~~~~~-------------------~~~~--~--~~~~~l~L~G~hq~~Na~lAia~ 289 (585)
|+|.||+.+..++.+. +++++.++. |... . ...+.++++|.||++|+++|+++
T Consensus 227 V~n~dd~~~~~~~~~~----~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hn~~NalaAia~ 302 (475)
T 1p3d_A 227 VMCADDPVLMELVPKV----GRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAV 302 (475)
T ss_dssp EEETTCHHHHHHHHHH----CSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTCCEEEEEESSCSHHHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHhc----CCCEEEEecCCCCcEEEEEEEEcCCceEEEEEECCCeEEEEEEcCccHHHHHHHHHHHHH
Confidence 9999998876655432 333333321 1100 0 01467899999999999999999
Q ss_pred HHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCCCCeEEEEecCCCHHHHHH
Q 007911 290 SECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEA 368 (585)
Q Consensus 290 a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilDgAHnp~sl~a 368 (585)
+..+ | ..++.|.++|++|. ||||||++..... .++++.||+||||||+++++
T Consensus 303 ~~~l----g-------------i~~~~i~~~L~~f~~~~gR~e~v~~~~~----------~~~~~~vi~DyaHnp~~~~a 355 (475)
T 1p3d_A 303 AKEE----G-------------IANEAILEALADFQGAGRRFDQLGEFIR----------PNGKVRLVDDYGHHPTEVGV 355 (475)
T ss_dssp HHHT----T-------------CCHHHHHHHHHTCCCBTTSSEEEEEEEE----------TTEEEEEEEECCCSHHHHHH
T ss_pred HHHc----C-------------CCHHHHHHHHHhCCCCCCCCEEEecccc----------cCCCcEEEEeCCCCHHHHHH
Confidence 9887 6 24789999999998 9999999975200 00147899999999999999
Q ss_pred HHHHHHhhhccCCCCCCccccccccccchhHHHhhccccccccccccccccCccEEEEEecCC-CCChhhhhHHHHHHhh
Q 007911 369 CAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCME-ARHPQVLLPRLVSTCA 447 (585)
Q Consensus 369 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~~-~Rd~~~ll~~l~~~~~ 447 (585)
++++++... +.+++++|||+++ +|+ ..+...+.+.+.
T Consensus 356 ~l~al~~~~-----------------------------------------~~~~i~~v~g~~~~~r~-~~~~~~~~~~~~ 393 (475)
T 1p3d_A 356 TIKAAREGW-----------------------------------------GDKRIVMIFQPHRYSRT-RDLFDDFVQVLS 393 (475)
T ss_dssp HHHHHHHHH-----------------------------------------CSSCEEEEECCBCHHHH-HHTHHHHHHHHT
T ss_pred HHHHHHhhc-----------------------------------------CCCeEEEEECCCCCccH-HHHHHHHHHHHH
Confidence 999998642 2247899999754 332 234455655442
Q ss_pred hcCCCccEEEEeCCCcccccccCCCCccCCCccccchhHHHHHHHHHHHhhcCCCCcccccccccccccCCCccccccCC
Q 007911 448 SSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQFSLQRLWERIIHGADPVLEKSSMKESTEILPPCKFLYEDA 527 (585)
Q Consensus 448 ~~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (585)
.+|.+++++... . +. .|.. . .. .+.+++.+.... .
T Consensus 394 ----~~d~vi~t~~~~-~-----~e--~~~~--g--~~-~~~l~~~~~~~~--~-------------------------- 428 (475)
T 1p3d_A 394 ----QVDALIMLDVYA-A-----GE--APIV--G--AD-SKSLCRSIRNLG--K-------------------------- 428 (475)
T ss_dssp ----TSSEEEEECCBC-T-----TC--CCCT--T--CS-HHHHHHHHHHHT--S--------------------------
T ss_pred ----hCCEEEEcCCcC-C-----CC--CCCC--C--CC-HHHHHHHHHhhC--C--------------------------
Confidence 478888886541 1 11 1100 0 00 122333333210 0
Q ss_pred CCCCCCcccCccceecCCHHHHHHHHHhhhhcCCCCcceEEEe--CchhchHhHHh
Q 007911 528 PLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQVLVT--GSLHLVGDVLK 581 (585)
Q Consensus 528 ~~~~~~~~~~~~~~v~~si~~ai~~~~~~~~~~~~~~~~VlVT--GSlhLVG~~l~ 581 (585)
..+.++++.++|++++.+.++. + --|||+ ||||+||..|.
T Consensus 429 ----------~~~~~~~~~~~ai~~a~~~a~~--g--d~VLv~G~Gs~~~v~~~l~ 470 (475)
T 1p3d_A 429 ----------VDPILVSDTSQLGDVLDQIIQD--G--DLILAQGAGSVSKISRGLA 470 (475)
T ss_dssp ----------CCCEEESCGGGHHHHHHHHCCT--T--CEEEEECSSTHHHHHHHHH
T ss_pred ----------CceEEECCHHHHHHHHHHhCCC--C--CEEEEECCCCHHHHHHHHH
Confidence 0245678999999999887643 1 258898 99999999873
No 11
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=100.00 E-value=1.7e-42 Score=381.13 Aligned_cols=328 Identities=19% Similarity=0.174 Sum_probs=224.6
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCCC
Q 007911 76 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPP 155 (585)
Q Consensus 76 l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~ps 155 (585)
.++|||||||||||||+||++||+++|++ || +.++|...+... +
T Consensus 119 ~~vI~VTGTnGKTTTt~ml~~iL~~~G~~------p~-------~~igg~~~~~~~----------------------~- 162 (491)
T 2f00_A 119 RHGIAIAGTHGKTTTTAMVSSIYAEAGLD------PT-------FVNGGLVKAAGV----------------------H- 162 (491)
T ss_dssp SEEEEEESSSCHHHHHHHHHHHHHHTTCC------CE-------EEEEEEETTTTE----------------------E-
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHhCCCC------CE-------EEECCeeccccc----------------------c-
Confidence 58999999999999999999999999986 33 345555442110 0
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhccc---CCCCcE
Q 007911 156 LFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIF---KPQIPA 232 (585)
Q Consensus 156 ~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~---k~g~~a 232 (585)
....++|++|+|+| ++|+++...+|+++|||||+.||+|+||+|+|+|+++|+.|| +++.++
T Consensus 163 ------------~~~~~~d~~VlE~~---~~~~~~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~ 227 (491)
T 2f00_A 163 ------------ARLGHGRYLIAEAD---ESDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRA 227 (491)
T ss_dssp ------------EECCSSSEEEEECC---CTTSGGGGCCCSEEEECCCCSCSGGGTTTCHHHHHHHHHHHHTTSCTTCEE
T ss_pred ------------ccCCCCCEEEEEeC---CCccchhcCCCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHHhCCCCCEE
Confidence 01247899999995 678888766899999999999999999779999999999887 467789
Q ss_pred EeeCCchHHHHHHHHHHHhcCccEEEecc-------------------cchh--h--hhcccccCcchhhHhhHHHHHHH
Q 007911 233 FTVPQLSEAMSVLQDRALELMVPLEVAAP-------------------LDIE--K--LKRLELSLSGDHQLVNAGLAVSL 289 (585)
Q Consensus 233 V~~~qd~~~~~vl~~~a~~~~~~l~~~~~-------------------~~~~--~--~~~~~l~L~G~hq~~Na~lAia~ 289 (585)
|+|.||+.+..++. +.+++++.++. |... . ...+.++++|.||++|+++|+++
T Consensus 228 V~n~dd~~~~~~~~----~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~ 303 (491)
T 2f00_A 228 VMCVDDPVIRELLP----RVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAAVAV 303 (491)
T ss_dssp EEETTSHHHHHHGG----GCCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCEEEEESSCSHHHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHH----hcCCcEEEEeCCCCCCEEEEEEEEcCCceEEEEEECCceEEEEEEccchHHHHHHHHHHHHH
Confidence 99999987655443 23344443321 1100 0 01467899999999999999999
Q ss_pred HHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCCCC-eEEEEecCCCHHHHH
Q 007911 290 SECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGE-LIFYLDGAHTAESME 367 (585)
Q Consensus 290 a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~~~-~~vilDgAHnp~sl~ 367 (585)
+..+ | ..++.|.++|++|. ||||||++...... ..+.+++ +.||+||||||++++
T Consensus 304 a~~l----g-------------i~~~~i~~~L~~f~~~~gR~e~v~~~~~~------~~~~~~g~~~vi~DyaHnp~~~~ 360 (491)
T 2f00_A 304 ATEE----G-------------IDDEAILRALESFQGTGRRFDFLGEFPLE------PVNGKSGTAMLVDDYGHHPTEVD 360 (491)
T ss_dssp HHHH----T-------------CCHHHHHHHHHTCCCBTTSSEEEEEEESS------SSSSCSSEEEEEEECCCSHHHHH
T ss_pred HHHc----C-------------CCHHHHHHHHHhCCCCCCCCEEEcccccc------ccccCCCcEEEEEeCCCCHHHHH
Confidence 9988 7 24789999999998 99999999752000 0000015 789999999999999
Q ss_pred HHHHHHHhhhccCCCCCCccccccccccchhHHHhhccccccccccccccccCccEEEEEecCC-CCChhhhhHHHHHHh
Q 007911 368 ACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCME-ARHPQVLLPRLVSTC 446 (585)
Q Consensus 368 a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~~-~Rd~~~ll~~l~~~~ 446 (585)
+++++++... +.+++++|||+++ +|+ ..+...+.+.+
T Consensus 361 a~l~al~~~~-----------------------------------------~~~~i~~v~g~~~~~r~-k~~~~~~~~~~ 398 (491)
T 2f00_A 361 ATIKAARAGW-----------------------------------------PDKNLVMLFQPHRFTRT-RDLYDDFANVL 398 (491)
T ss_dssp HHHHHHHTTC-----------------------------------------CSSEEEEEECCBCHHHH-TTTHHHHHHHH
T ss_pred HHHHHHHhhc-----------------------------------------CCCeEEEEECCCCCcch-HHHHHHHHHHH
Confidence 9999987641 2347899999753 232 23445555544
Q ss_pred hhcCCCccEEEEeCCCcccccccCCCCccCCCccccchhHHHHHHHHHHHhhcCCCCcccccccccccccCCCccccccC
Q 007911 447 ASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQFSLQRLWERIIHGADPVLEKSSMKESTEILPPCKFLYED 526 (585)
Q Consensus 447 ~~~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (585)
. .+|.+++++... . +..+. ..... +.+++.+... .
T Consensus 399 ~----~~d~vilt~~~~-~-----~e~~~-~g~~~------~~l~~~~~~~----~------------------------ 433 (491)
T 2f00_A 399 T----QVDTLLMLEVYP-A-----GEAPI-PGADS------RSLCRTIRGR----G------------------------ 433 (491)
T ss_dssp T----TSSEEEECCCBC-S-----SSCCC-TTSSH------HHHTTC---------------------------------
T ss_pred H----hCCEEEEcCCcC-C-----CCCCC-CCCCH------HHHHHHHHhh----C------------------------
Confidence 2 478888876431 1 10000 00000 1111111100 0
Q ss_pred CCCCCCCcccCccceecCCHHHHHHHHHhhhhcCCCCcceEEEe--CchhchHhHHhh
Q 007911 527 APLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQVLVT--GSLHLVGDVLKL 582 (585)
Q Consensus 527 ~~~~~~~~~~~~~~~v~~si~~ai~~~~~~~~~~~~~~~~VlVT--GSlhLVG~~l~~ 582 (585)
...+.++++.++|++++.+.++. .--|||+ ||||+||.+|.-
T Consensus 434 ----------~~~~~~~~~~~~ai~~a~~~a~~----gd~VLv~gaGsl~~v~~~l~~ 477 (491)
T 2f00_A 434 ----------KIDPILVPDPARVAEMLAPVLTG----NDLILVQGAGNIGKIARSLAE 477 (491)
T ss_dssp ------------CCEECCCSSCCHHHHGGGCCS----EEEEEEECSTTHHHHHHHHHH
T ss_pred ----------CCceEEeCCHHHHHHHHHHhCCC----CCEEEEECCCCHHHHHHHHHH
Confidence 00245678999999998876543 2258898 999999999864
No 12
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=1.3e-41 Score=372.29 Aligned_cols=256 Identities=15% Similarity=0.129 Sum_probs=189.5
Q ss_pred CccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCcccccc-ceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCC
Q 007911 75 ELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVR-ERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPM 153 (585)
Q Consensus 75 ~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~r-ERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~ 153 (585)
+.++||||||||||||++||++||+++|+++|+|++|++.+++ ||++++
T Consensus 113 ~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~~~~~~~g~~~~~g~~~~~~~------------------------------ 162 (469)
T 1j6u_A 113 KKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGIMDSLEHGNYEKG------------------------------ 162 (469)
T ss_dssp CCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSCCTTSTTSSEECC------------------------------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCeecccCccccccC------------------------------
Confidence 4689999999999999999999999999999999999988777 666431
Q ss_pred CCHHHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccCCCCcEE
Q 007911 154 PPLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAF 233 (585)
Q Consensus 154 ps~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~g~~aV 233 (585)
+.| +|+|+|+. |.++...+|+++|||||+.||+|+||+|+|+|+++|..+++....+|
T Consensus 163 ------------------~~~-~V~E~~~~---~~~~~~~~p~vaviTNI~~DHld~~g~t~e~ia~ak~~~~~~~~~~V 220 (469)
T 1j6u_A 163 ------------------NGP-VVYELDES---EEFFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTDLVV 220 (469)
T ss_dssp ------------------SSC-EEEEECTT---SGGGGGCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTCSEEE
T ss_pred ------------------CCC-EEEECCCc---cCccccccCCEEEEcCCCcchhhhhcCHHHHHHHHHHHHHhhCCEEE
Confidence 235 89999765 66765558999999999999999999779999999998876433678
Q ss_pred eeCCchHHHHHHHHHHHhcC---ccEEE----ec----ccch--h--hhhcccccCcchhhHhhHHHHHHHHHHHHHhcC
Q 007911 234 TVPQLSEAMSVLQDRALELM---VPLEV----AA----PLDI--E--KLKRLELSLSGDHQLVNAGLAVSLSECWLRRTG 298 (585)
Q Consensus 234 ~~~qd~~~~~vl~~~a~~~~---~~l~~----~~----~~~~--~--~~~~~~l~L~G~hq~~Na~lAia~a~~ll~~~g 298 (585)
+|.||+.+.++ ..-..+ +++.. .. .|.. . .+..+.++++|.||++|+++|++++..+ |
T Consensus 221 ~n~dd~~~~~~---~~~~~g~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l----g 293 (469)
T 1j6u_A 221 TFAEDELTSHL---GDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKRYLELKLKVPGFHNVLNALAVIALFDSL----G 293 (469)
T ss_dssp EETTCTTTGGG---CSEEECSSSSSEEEEEEEECSSCEEEEEEETTEEEEEEEESSCSHHHHHHHHHHHHHHHHT----T
T ss_pred EECCChhhccc---eEEEEECCCceEEEEEEECCCCCEEEEEEECCeEEEEEEecCcCHHHHHHHHHHHHHHHHc----C
Confidence 89888864321 000011 12211 00 0111 0 1124678999999999999999999887 6
Q ss_pred CCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEE--ecccCCCCCCCccccCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 007911 299 NWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIV--YDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSS 375 (585)
Q Consensus 299 ~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i--~~~~~~~~~~~~~~~~~~~~~vilDgAHnp~sl~a~l~~~~~ 375 (585)
..++.+.++|++|+ ||||||++ ... +++.||+||||||+++++++++++.
T Consensus 294 -------------i~~~~i~~~L~~f~g~~gR~e~v~~~~~--------------~g~~vi~D~aHnp~~~~a~l~al~~ 346 (469)
T 1j6u_A 294 -------------YDLAPVLEALEEFRGVHRRFSIAFHDPE--------------TNIYVIDDYAHTPDEIRNLLQTAKE 346 (469)
T ss_dssp -------------CCHHHHHHHHHHCCCCTTSSEEEEEETT--------------TTEEEEEECCCSHHHHHHHHHHHHH
T ss_pred -------------CCHHHHHHHHHhCCCCCCCcEEEccccc--------------CCcEEEEeCCCCHHHHHHHHHHHHH
Confidence 24789999999999 99999999 443 3589999999999999999999975
Q ss_pred hhccCCCCCCccccccccccchhHHHhhccccccccccccccccCccEEEEEecCC-CCChhhhhHHHHHHhhhcCCCcc
Q 007911 376 VVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCME-ARHPQVLLPRLVSTCASSGTHFS 454 (585)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~~-~Rd~~~ll~~l~~~~~~~~~~fd 454 (585)
.. +..++++||++++ +|+. .+...|...+. .+|
T Consensus 347 ~~-----------------------------------------~~~~i~~I~g~g~~~r~~-~~~~~l~~~~~----~~d 380 (469)
T 1j6u_A 347 VF-----------------------------------------ENEKIVVIFQPHRYSRLE-REDGNFAKALQ----LAD 380 (469)
T ss_dssp HC-----------------------------------------SSSEEEEEECCBC---------CHHHHHHT----TSS
T ss_pred hc-----------------------------------------CCCcEEEEEcCCCCCccH-HHHHHHHHHHh----cCC
Confidence 31 2347899999643 3433 34455555442 478
Q ss_pred EEEEeCCC
Q 007911 455 KALFVPSV 462 (585)
Q Consensus 455 ~~if~~~~ 462 (585)
.+++++..
T Consensus 381 ~vil~~~~ 388 (469)
T 1j6u_A 381 EVVVTEVY 388 (469)
T ss_dssp EEEECCCB
T ss_pred EEEEcccC
Confidence 88888653
No 13
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=100.00 E-value=9.7e-42 Score=370.01 Aligned_cols=211 Identities=18% Similarity=0.225 Sum_probs=168.9
Q ss_pred CccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCC
Q 007911 75 ELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMP 154 (585)
Q Consensus 75 ~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~p 154 (585)
+.++||||||||||||++||++||+++|++++++++. |.|+++
T Consensus 103 ~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gni------------g~~~~~------------------------- 145 (439)
T 2x5o_A 103 QAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNI------------GLPALM------------------------- 145 (439)
T ss_dssp CSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEESS------------SBCHHH-------------------------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeccc------------CHHHHH-------------------------
Confidence 3689999999999999999999999999999987752 333211
Q ss_pred CHHHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccCCCCcEEe
Q 007911 155 PLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQIPAFT 234 (585)
Q Consensus 155 s~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~g~~aV~ 234 (585)
. + ..+.|++|+|+|+ +++|.+|.+ +|+++|||||+.||+|+||+|+|+|+++|++||+++.++|+
T Consensus 146 ----~--------~-~~~~d~~VlE~~~-~~l~~~~~~-~p~vaviTNI~~DHld~~G~t~e~i~~~K~~i~~~~~~~V~ 210 (439)
T 2x5o_A 146 ----L--------L-DDECELYVLELSS-FQLETTSSL-QAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVV 210 (439)
T ss_dssp ----H--------C-CTTCCEEEEECCH-HHHHTCCCC-CCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTTCSEEEE
T ss_pred ----H--------h-CCCCCEEEEECCc-hhhcccccC-CCCEEEEeCCChhhcccccCCHHHHHHHHHHHHcCCCEEEE
Confidence 0 1 2346999999999 789999887 79999999999999999977999999999999999999999
Q ss_pred eCCchHHHHHHHHHHHhcCccEEEecc--------------cch-hh---hhcccccCcchhhHhhHHHHHHHHHHHHHh
Q 007911 235 VPQLSEAMSVLQDRALELMVPLEVAAP--------------LDI-EK---LKRLELSLSGDHQLVNAGLAVSLSECWLRR 296 (585)
Q Consensus 235 ~~qd~~~~~vl~~~a~~~~~~l~~~~~--------------~~~-~~---~~~~~l~L~G~hq~~Na~lAia~a~~ll~~ 296 (585)
|.||+.+..++.. +++++.++. +.+ .. ...+.++++|.||++|+++|++++..+
T Consensus 211 n~dd~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~l--- 282 (439)
T 2x5o_A 211 NADDALTMPIRGA-----DERCVSFGVNMGDYHLNHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAA--- 282 (439)
T ss_dssp ETTCGGGSCSCCC-----SSCCEEECSSSSSEEEEEETTEEEEEETTEEEEEGGGCSCCSHHHHHHHHHHHHHHHHT---
T ss_pred eCCCHHHHHHhhc-----CCcEEEEeCCCcCcCcEEEECCEEEEeCCcEEEeehhcCCCCHHHHHHHHHHHHHHHHc---
Confidence 9999875433221 234333321 000 00 113578999999999999999999887
Q ss_pred cCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCCCCeEEEEe-cCCCHHHHHHHHHHH
Q 007911 297 TGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLD-GAHTAESMEACAKWF 373 (585)
Q Consensus 297 ~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilD-gAHnp~sl~a~l~~~ 373 (585)
| ..++.|.++|++|. ||||||++... +++.||+| |||||+|++++++++
T Consensus 283 -g-------------i~~~~i~~~L~~f~~~~gR~e~~~~~--------------~~~~vi~Ds~a~np~a~~~al~~l 333 (439)
T 2x5o_A 283 -G-------------LPRASSLKALTTFTGLPHRFEVVLEH--------------NGVRWINDSKATNVGSTEAALNGL 333 (439)
T ss_dssp -T-------------CCHHHHHHHHHHCCCCTTSSEEEEEE--------------TTEEEEECTTCCSHHHHHHHHTTC
T ss_pred -C-------------CCHHHHHHHHHhCCCCCCceEEEEEE--------------CCEEEEEeCCCCCHHHHHHHHHhC
Confidence 6 24789999999997 99999999764 35789999 899999999988743
No 14
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=100.00 E-value=1.2e-38 Score=351.05 Aligned_cols=327 Identities=17% Similarity=0.181 Sum_probs=221.8
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCCC
Q 007911 76 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMPP 155 (585)
Q Consensus 76 l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~ps 155 (585)
.++|+||||||||||++||++||+++|++...++. |. +.. ++.+.
T Consensus 122 ~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~~g-------------g~-~~~---------------------~g~~~ 166 (494)
T 4hv4_A 122 RHGIAVAGTHGKTTTTAMLSSIYAEAGLDPTFVNG-------------GL-VKA---------------------AGTHA 166 (494)
T ss_dssp SEEEEEECSSSHHHHHHHHHHHHHHTTCCCEEEEE-------------EE-ETT---------------------TTEEE
T ss_pred CCEEEEecCCChHHHHHHHHHHHHhcCCCCEEEEC-------------Cc-ccc---------------------ccccc
Confidence 37999999999999999999999999986322211 10 000 00000
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccCC---CCcE
Q 007911 156 LFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKP---QIPA 232 (585)
Q Consensus 156 ~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~---g~~a 232 (585)
.-.++|++|+|+|.+ |.+....+|+++|||||+.||+|+||+|+|+|+.+|++||+. ++.+
T Consensus 167 -------------~~~~~d~~VlE~~e~---~~s~~~~~P~iaVITNI~~DHld~~G~t~e~~a~aK~~i~~~~~~~g~~ 230 (494)
T 4hv4_A 167 -------------RLGSSRYLIAEADES---DASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRA 230 (494)
T ss_dssp -------------ECCSSSEEEEECCCG---GGGGGGCCCSEEEECCCCCSSCCSSTTHHHHHHHHHHHHHTTSCTTCEE
T ss_pred -------------ccCCCcEEEEEcccc---ccccccccCCEEEEcCCCHHHhhhhccCHHHHHHHHHHHHhcCCCCCEE
Confidence 013579999999855 344444489999999999999999966999999999999974 5678
Q ss_pred EeeCCchHHHHHHHHHHHhcCccEEEecc-------------------cchh----hhhcccccCcchhhHhhHHHHHHH
Q 007911 233 FTVPQLSEAMSVLQDRALELMVPLEVAAP-------------------LDIE----KLKRLELSLSGDHQLVNAGLAVSL 289 (585)
Q Consensus 233 V~~~qd~~~~~vl~~~a~~~~~~l~~~~~-------------------~~~~----~~~~~~l~L~G~hq~~Na~lAia~ 289 (585)
|+|.||+.+..++. +.+++++.++. |... ....+.++++|.||++|+++|+++
T Consensus 231 V~n~dd~~~~~~~~----~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~l~G~hnv~NalaAia~ 306 (494)
T 4hv4_A 231 VMCIDDPVVRELLP----RVGRHITTYGFSDDADVQIASYRQEGPQGHFTLRRQDKPLIEVTLNAPGRHNALNAAAAVAV 306 (494)
T ss_dssp EEETTSHHHHHHGG----GCCSCEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCEEEEESSCSHHHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHH----hcCCCEEEEecCCCCceEEEEEEEeCCEEEEEEEECCceEEEEEecCCcHHHHHHHHHHHHH
Confidence 99999987655432 33444443321 0000 012367899999999999999999
Q ss_pred HHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCC-CCeEEEEecCCCHHHHH
Q 007911 290 SECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSS-GELIFYLDGAHTAESME 367 (585)
Q Consensus 290 a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~-~~~~vilDgAHnp~sl~ 367 (585)
+..+ | ..++.|.++|++|+ ||||||++...+.. ....+ +++.||+||||||++++
T Consensus 307 a~~l----g-------------i~~~~i~~~L~~f~g~~~R~e~v~~~~~~------~~~~~~~g~~vi~DyaHnp~~i~ 363 (494)
T 4hv4_A 307 ATEE----G-------------IEDEDILRALVGFQGTGRRFDFLGNFPLA------PVNGKEGSAMLVDDYGHHPTEVD 363 (494)
T ss_dssp HHHH----T-------------CCHHHHHHHHHHCCCBTTSSEEEEEEESH------HHHSCSSEEEEEEECCCSHHHHH
T ss_pred HHHc----C-------------CCHHHHHHHHHhCCCCCCccEEeeecccc------ccccCCCCeEEEEeCCCCHHHHH
Confidence 9988 7 24789999999999 99999999752000 00000 15899999999999999
Q ss_pred HHHHHHHhhhccCCCCCCccccccccccchhHHHhhccccccccccccccccCccEEEEEecCCCCChhhhhHHHHHHhh
Q 007911 368 ACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCMEARHPQVLLPRLVSTCA 447 (585)
Q Consensus 368 a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~~~Rd~~~ll~~l~~~~~ 447 (585)
+++++++... +.+|+++||++..+.....++..+...+.
T Consensus 364 a~l~al~~~~-----------------------------------------~~~rii~V~g~~~~~r~k~~~~~~~~~~~ 402 (494)
T 4hv4_A 364 ATIKAARAGW-----------------------------------------PDKRIVMLFQPHRYTRTRDLYDDFANVLS 402 (494)
T ss_dssp HHHHHHHHHC-----------------------------------------TTSEEEEEECCBCHHHHHHTHHHHHHHHT
T ss_pred HHHHHHHhhc-----------------------------------------CCCeEEEEEcCCCCCchHHHHHHHHHHHh
Confidence 9999987651 23478999997544333455666665542
Q ss_pred hcCCCccEEEEeCCCcccccccCCCCccCCCccccchhHHHHHHHHHHHhhcCCCCcccccccccccccCCCccccccCC
Q 007911 448 SSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQFSLQRLWERIIHGADPVLEKSSMKESTEILPPCKFLYEDA 527 (585)
Q Consensus 448 ~~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (585)
.+|.+++++.... +..+. ..... +.+++.+... .
T Consensus 403 ----~aD~vilt~~~~~------~e~p~-~g~~~------~~l~~~~~~~----g------------------------- 436 (494)
T 4hv4_A 403 ----QVDVLLMLDVYAA------GEPPI-PGADS------RALCRTIRNR----G------------------------- 436 (494)
T ss_dssp ----TSSEEEEECCBCT------TCCCC-TTCSH------HHHHHHHHTT----T-------------------------
T ss_pred ----cCCEEEEeCCcCC------ccCCc-CCccH------HHHHHHHHhh----C-------------------------
Confidence 4788888865411 11000 00001 1233222211 0
Q ss_pred CCCCCCcccCccceecCCHHHHHHHHHhhhhcCCCCcceEEEeC--chhchHhHH
Q 007911 528 PLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQVLVTG--SLHLVGDVL 580 (585)
Q Consensus 528 ~~~~~~~~~~~~~~v~~si~~ai~~~~~~~~~~~~~~~~VlVTG--SlhLVG~~l 580 (585)
...+.++++.++|++.+.+.++. .=-||++| |++.+|..|
T Consensus 437 ---------~~~~~~~~~~~eAv~~a~~~a~~----gDvVL~~GaG~~~~~~~~l 478 (494)
T 4hv4_A 437 ---------KLDPILVPDSESAPEMLAQILNG----EDLILVQGAGNIGKIARKL 478 (494)
T ss_dssp ---------SCCCEEECCTTTHHHHHHHHCCT----TEEEEEECSSTHHHHHHHH
T ss_pred ---------CCCeEEeCCHHHHHHHHHHhCCC----CCEEEEECCCCHHHHHHHH
Confidence 01356789999999999887643 22588877 999999876
No 15
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=1.2e-37 Score=345.34 Aligned_cols=336 Identities=16% Similarity=0.181 Sum_probs=216.9
Q ss_pred CccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEe---cCHHHHHHHHHHHHHhhhhhccCCC
Q 007911 75 ELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLD---ITEDKFLFYFWECWHLLRENVTEDL 151 (585)
Q Consensus 75 ~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~---is~~~f~~~f~~v~~~l~~~~~~~~ 151 (585)
..++|+||||||||||++|+++||+++|++++.+ ++|.+ -+.+.+...+ .....-..
T Consensus 121 ~~~vIaVTGTnGKTTTt~li~~iL~~~G~~~~~~-------------iGg~~~~~~T~~nln~~i-------g~~~~~~~ 180 (524)
T 3hn7_A 121 SRHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFL-------------IGGVPLVNTTDTNLQQVF-------AHSSYLGT 180 (524)
T ss_dssp GSEEEEEECSSCHHHHHHHHHHHHHHTTCCCEEE-------------CSCCBCCCSSCHHHHHHT-------TSSEECCC
T ss_pred cCcEEEEECCCCHHHHHHHHHHHHHHcCCCceEE-------------ECCEeccccCchhhhhhh-------hhHHhhCC
Confidence 4589999999999999999999999999988643 12221 1122222111 00000000
Q ss_pred CCCCHHHHHHHHHHHHhhhCCCcEEEEeecCC--CCccc-ccc-ccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccC
Q 007911 152 PMPPLFQFLTVLAFKIFVCEQVDVAIIEVGLG--GEKDS-TNV-IKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFK 227 (585)
Q Consensus 152 ~~ps~Fe~lTllA~~~F~~~~vd~aVlEvG~g--Gr~D~-Tnv-i~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k 227 (585)
...++. .+.++|++|+|+|+. +..+. +.+ ..+|+++|||||+.||+|+|| |+|+|+.+|+.||+
T Consensus 181 ~~~~~~-----------~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~iaViTNI~~DHLd~~g-s~e~y~~aK~~i~~ 248 (524)
T 3hn7_A 181 EKDDSD-----------NSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFA-DLDAIQTQFHHMVR 248 (524)
T ss_dssp CCCSSC-----------TTCCCCEEEEECCSCCCBTTBCCCHHHHCCCSEEEECCCCCC-------CHHHHHHHHHHHHT
T ss_pred Cccccc-----------ccccCcEEEEECCCCCccccccccceeeecCCEEEEcCCChHHccccC-CHHHHHHHHHHHHH
Confidence 000000 134578999999874 32222 111 128999999999999999999 99999999999997
Q ss_pred ---CCCcEEeeCCchHHHHHHHHHHHhcCccEEEec-----------------------c--------------cchh--
Q 007911 228 ---PQIPAFTVPQLSEAMSVLQDRALELMVPLEVAA-----------------------P--------------LDIE-- 265 (585)
Q Consensus 228 ---~g~~aV~~~qd~~~~~vl~~~a~~~~~~l~~~~-----------------------~--------------~~~~-- 265 (585)
++..+|+|.|||....++.+. ..++++.++ . |...
T Consensus 249 ~~~~~g~~VlN~DD~~~~~~~~~~---~~~~v~~fg~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~~g~~f~l~~~ 325 (524)
T 3hn7_A 249 MIPSTGKIIMPAATISLEDTLAKG---VWTPIWRTSVIDSTISSVRREDSPLENSQAENSSDWQAELISADGSQFTVSFN 325 (524)
T ss_dssp TSCTTSEEEEESSCHHHHHHHHTC---CCSCEEEEEEEC-------------------CCCSEEEEEEETTTTEEEEEET
T ss_pred hCCCCCEEEEECCCHHHHHHHHhc---cCCcEEEEecCcccccccccccccccccccCCCCcEEEEEEECCceEEEEEEC
Confidence 567899999999765544321 112222111 0 0000
Q ss_pred --h--hhcccccCcchhhHhhHHHHHHHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCC
Q 007911 266 --K--LKRLELSLSGDHQLVNAGLAVSLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVP 340 (585)
Q Consensus 266 --~--~~~~~l~L~G~hq~~Na~lAia~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~ 340 (585)
. +..+.++++|.||++|+++|++++..+ | ..++.+.++|++|. ||||||++...
T Consensus 326 ~~~~~~~~~~l~l~G~hn~~NalaA~a~~~~l----g-------------i~~~~i~~~L~~~~~~~gR~e~~~~~---- 384 (524)
T 3hn7_A 326 DNKEATALVNWSMSGLHNVNNALVAIAAAYNI----G-------------VSVKTACAALSAFAGIKRRMELIGDV---- 384 (524)
T ss_dssp TEEEEEEEEECSCCSHHHHHHHHHHHHHHHHT----T-------------CCHHHHHHHHHTCCCBTTSSEEEEEE----
T ss_pred CccceeEEEEeCCCcHHHHHhHHHHHHHHHHc----C-------------CCHHHHHHHHHhCCCCCceEEEEEec----
Confidence 0 124678999999999999999999887 6 24789999999998 99999999764
Q ss_pred CCCCccccCCCCeEEEEecCCCHHHHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhccccccccccccccccC
Q 007911 341 NSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKI 420 (585)
Q Consensus 341 ~~~~~~~~~~~~~~vilDgAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (585)
+++.||+|+||||+++++++++++... +.
T Consensus 385 ----------~g~~vi~D~ahnp~~~~a~l~~l~~~~-----------------------------------------~~ 413 (524)
T 3hn7_A 385 ----------NDILVFDDFAHHPTAITTTLDGAKKKL-----------------------------------------AD 413 (524)
T ss_dssp ----------TTEEEEEECCCSHHHHHHHHHHHHHHH-----------------------------------------TT
T ss_pred ----------CCcEEEEECCCCHHHHHHHHHHHHhhc-----------------------------------------CC
Confidence 368999999999999999999998752 23
Q ss_pred ccEEEEEecCCCC-ChhhhhHHHHHHhhhcCCCccEEEEeCCCcccccccCCCCccCCCccccchhHHHHHHHHHHHhhc
Q 007911 421 SKQILLFNCMEAR-HPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQFSLQRLWERIIH 499 (585)
Q Consensus 421 ~~~ilvFg~~~~R-d~~~ll~~l~~~~~~~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~w~~l~~ 499 (585)
+++++||||++.+ +...+...+...+ ..+|.++++++.. + ... .+++.+.+..
T Consensus 414 ~r~i~V~g~~~~~~~~g~~~~~~~~~~----~~aD~vil~~~~~---------r----~~~---------~~~l~~~~~~ 467 (524)
T 3hn7_A 414 RRLWAIIEPRSNTMKMGIHQDSLAQSA----TLADHTLWYEPTG---------L----EWG---------LKEVIDNATI 467 (524)
T ss_dssp SCEEEEEECCCCSSCCSCCTTHHHHHT----TTSSEEEEECCTT---------C----CCS---------HHHHHHHHHH
T ss_pred CCEEEEECCCCcchhhhhhHHHHHHHH----hcCCEEEEcCCCC---------C----CCC---------HHHHHHHHHh
Confidence 5789999996543 2223333444433 2589988876430 0 010 1122223311
Q ss_pred CCCCcccccccccccccCCCccccccCCCCCCCCcccCccceecCCHHHHHHHHHhhhhcCCCCcceEEEe--CchhchH
Q 007911 500 GADPVLEKSSMKESTEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLRDSVQENPSIRVQVLVT--GSLHLVG 577 (585)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~ai~~~~~~~~~~~~~~~~VlVT--GSlhLVG 577 (585)
.... ...+.++++.++|++++.+.++. + --|||+ ||++.||
T Consensus 468 ~~~~---------------------------------~~~~~~~~~~~eai~~~~~~a~~--g--D~VLv~GaG~~~~v~ 510 (524)
T 3hn7_A 468 ANPS---------------------------------IGSQQVLSSVDDIIKHICTHAKA--G--DAIVIMSNGGFEGIH 510 (524)
T ss_dssp HCGG---------------------------------GCCEEEESCHHHHHHHHHHHCCT--T--CEEEEEESSCGGGHH
T ss_pred hccC---------------------------------CCCeEEECCHHHHHHHHHHhCCC--C--CEEEEEcCCCHHHHH
Confidence 0000 01367889999999999887653 2 247887 5999999
Q ss_pred hHH
Q 007911 578 DVL 580 (585)
Q Consensus 578 ~~l 580 (585)
..|
T Consensus 511 ~~~ 513 (524)
T 3hn7_A 511 QRL 513 (524)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 16
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=100.00 E-value=9.2e-38 Score=340.02 Aligned_cols=211 Identities=17% Similarity=0.170 Sum_probs=165.3
Q ss_pred CccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCC
Q 007911 75 ELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMP 154 (585)
Q Consensus 75 ~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~p 154 (585)
+.++|+||||||||||+.||++||++.|+++.+.++. |.|++.
T Consensus 111 ~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gni------------g~~~~~------------------------- 153 (451)
T 3lk7_A 111 ESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNI------------GFPASE------------------------- 153 (451)
T ss_dssp CSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEETS------------SSCHHH-------------------------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeeec------------Chhhhh-------------------------
Confidence 3489999999999999999999999999987543321 111100
Q ss_pred CHHHHHHHHHHHHhhhCCCcEEEEeecCCCCccccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccCCC---Cc
Q 007911 155 PLFQFLTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFKPQ---IP 231 (585)
Q Consensus 155 s~Fe~lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k~g---~~ 231 (585)
. .....++|++|+|+|+++ +|.++.+ +|+++|||||+.||+|+|| |+|+|+.+|++||+.. ..
T Consensus 154 ----~-------~~~~~~~d~~VlE~~s~~-l~~~~~~-~p~iaviTNI~~DHld~~g-t~e~i~~aK~~i~~~~~~~~~ 219 (451)
T 3lk7_A 154 ----V-------VQAANDKDTLVMELSSFQ-LMGVKEF-RPHIAVITNLMPTHLDYHG-SFEDYVAAKWNIQNQMSSSDF 219 (451)
T ss_dssp ----H-------TTTCCTTCEEEEECCHHH-HTTCSSC-CCSEEEECCCCSCCHHHHS-SHHHHHHHHHGGGTTCCTTSE
T ss_pred ----h-------hhcCCCCCEEEEECCccc-ccccccc-CCCEEEEcCCChhHhhhcC-CHHHHHHHHHHHHhcCCCCCE
Confidence 0 001236899999999875 6788877 7999999999999999999 9999999999999864 45
Q ss_pred EEeeCCchHHHHHHHHHHHhcCccEEEeccc-c------------hh---hhhcccccCcchhhHhhHHHHHHHHHHHHH
Q 007911 232 AFTVPQLSEAMSVLQDRALELMVPLEVAAPL-D------------IE---KLKRLELSLSGDHQLVNAGLAVSLSECWLR 295 (585)
Q Consensus 232 aV~~~qd~~~~~vl~~~a~~~~~~l~~~~~~-~------------~~---~~~~~~l~L~G~hq~~Na~lAia~a~~ll~ 295 (585)
+|+|.||+.+.. .+++.+++++.++.- . +. ....+.++++|.||++|+++|++++..+
T Consensus 220 ~V~n~dd~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAia~a~~l-- 293 (451)
T 3lk7_A 220 LVLNFNQGISKE----LAKTTKATIVPFSTTEKVDGAYVQDKQLFYKGENIMSVDDIGVPGSHNVENALATIAVAKLA-- 293 (451)
T ss_dssp EEEETTSHHHHH----HHTTCSSEEEEEESSSCCSSEEEETTEEEETTEEEEEGGGSSSCSHHHHHHHHHHHHHHHHH--
T ss_pred EEEECCcHHHHH----HHhhcCCeEEEEccCCCcCCEEEECCEEEECCcEEeeccccCCCcHHHHHHHHHHHHHHHHc--
Confidence 999999987544 344455565554310 0 00 0124678999999999999999999988
Q ss_pred hcCCCcccccCCCCCCCcHHHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCCCCeEEEEe-cCCCHHHHHHHHH
Q 007911 296 RTGNWEKVSHNDGQGADLPDAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLD-GAHTAESMEACAK 371 (585)
Q Consensus 296 ~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilD-gAHnp~sl~a~l~ 371 (585)
| ..++.|.++|++|. ||||||++... +++.||+| +||||+|+.++++
T Consensus 294 --g-------------i~~~~i~~~L~~f~~~~gR~e~v~~~--------------~g~~vi~D~~a~np~a~~~al~ 342 (451)
T 3lk7_A 294 --G-------------ISNQVIRETLSNFGGVKHRLQSLGKV--------------HGISFYNDSKSTNILATQKALS 342 (451)
T ss_dssp --T-------------CCHHHHHHHHHHCCCCTTSSEEEEEE--------------TTEEEEECTTCCSHHHHHHHHH
T ss_pred --C-------------CCHHHHHHHHHhCCCCCCcEEEEeee--------------CCcEEEEeCCCCCHHHHHHHHH
Confidence 7 24789999999997 99999999765 36899999 7999999999876
No 17
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=99.95 E-value=2.2e-27 Score=247.96 Aligned_cols=193 Identities=19% Similarity=0.182 Sum_probs=137.2
Q ss_pred CccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHHHHHHHhhhhhccCCCCCC
Q 007911 75 ELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYFWECWHLLRENVTEDLPMP 154 (585)
Q Consensus 75 ~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f~~v~~~l~~~~~~~~~~p 154 (585)
..++|+||||||||||++|+++||+++|+++++...--.-+++.... .+.|
T Consensus 107 ~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~~g~~~~n~~~~~~-----------------------------~~~p 157 (326)
T 3eag_A 107 HHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPENFGVSAR-----------------------------LPQT 157 (326)
T ss_dssp GSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECSSEETTSSCSEE-----------------------------CCCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEecceeccCCccee-----------------------------cCCc
Confidence 45899999999999999999999999999886432100001100000 0111
Q ss_pred CHHHHHHHHHHHHhhhCCCcEEEEeecCC--CCc----cccccccCCcEEEEcCCCcccccccCCCHHHHHHHHhcccC-
Q 007911 155 PLFQFLTVLAFKIFVCEQVDVAIIEVGLG--GEK----DSTNVIKEPVVCGVTSLGMDHMELLGNTLNDIAFHKAGIFK- 227 (585)
Q Consensus 155 s~Fe~lTllA~~~F~~~~vd~aVlEvG~g--Gr~----D~Tnvi~~P~vavITNIg~DHld~lG~Tle~IA~~KagI~k- 227 (585)
... ....+.|++|+|+|+. +.. +...+ +|+++|||||+.||+|+|| |+|+|+.+|++||+
T Consensus 158 ~~~----------~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~--~P~vaviTNI~~DHLd~~g-s~e~y~~aK~~i~~~ 224 (326)
T 3eag_A 158 PRQ----------DPNSQSPFFVIEADEYDTAFFDKRSKFVHY--RPRTAVLNNLEFDHADIFA-DLGAIQTQFHYLVRT 224 (326)
T ss_dssp CSS----------CTTSCCCEEEEECCCSEEETTEEEEGGGGS--CCSEEEECCCCCCCTTTSS-SHHHHHHHHHHHHTT
T ss_pred ccc----------ccCCCCCEEEEEccccccchhhcccceeEe--cCCEEEECCCcHHHHhhcC-CHHHHHHHHHHHHHh
Confidence 100 1356899999999873 322 22333 8999999999999999999 99999999999998
Q ss_pred --CCCcEEeeCCchHHHHHHHHHHHhcCccEEEecc---c-----------chh----hhhcccccCcchhhHhhHHHHH
Q 007911 228 --PQIPAFTVPQLSEAMSVLQDRALELMVPLEVAAP---L-----------DIE----KLKRLELSLSGDHQLVNAGLAV 287 (585)
Q Consensus 228 --~g~~aV~~~qd~~~~~vl~~~a~~~~~~l~~~~~---~-----------~~~----~~~~~~l~L~G~hq~~Na~lAi 287 (585)
++..+|+|.||+....++.+. ..++++.++. + ... .+..+.++++|.||++|+++|+
T Consensus 225 ~~~~~~~V~n~Dd~~~~~~~~~~---~~~~~~~~g~~~d~~~~~~~~~g~f~~~~~~~~~~~~~l~l~G~hNv~NalaAi 301 (326)
T 3eag_A 225 VPSEGLIVCNGRQQSLQDTLDKG---CWTPVEKFGTEHGWQAGEANADGSFDVLLDGKTAGRVKWDLMGRHNRMNALAVI 301 (326)
T ss_dssp SCTTSEEEEESSCHHHHHHHTTC---CCSCEEEESSSSSEEEEEECTTSCEEEEETTEEEEEECCCCCSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCHHHHHHHhhc---cCCCEEEECCCCcEEEEEecCCcEEEEEECCceEEEEEecCCcHHHHHHHHHHH
Confidence 677899999999876554321 2333333321 0 000 0124778999999999999999
Q ss_pred HHHHHHHHhcCCCcccccCCCCCCCcHHHHHHHHhhCCCCCc
Q 007911 288 SLSECWLRRTGNWEKVSHNDGQGADLPDAFVRGLSTAHLLGR 329 (585)
Q Consensus 288 a~a~~ll~~~g~~~~~~~~~~~~~~~~e~i~~gL~~~~~pGR 329 (585)
+++..+ | ..++.|+++|++|+...|
T Consensus 302 a~a~~l----G-------------i~~~~i~~~L~~f~gv~R 326 (326)
T 3eag_A 302 AAARHV----G-------------VDIQTACEALGAFKNVKR 326 (326)
T ss_dssp HHHHHH----T-------------CCHHHHHHHHHTCCCEEC
T ss_pred HHHHHc----C-------------CCHHHHHHHHHhCCCCCC
Confidence 999988 7 247899999999984444
No 18
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=99.37 E-value=2.6e-12 Score=120.99 Aligned_cols=87 Identities=13% Similarity=0.078 Sum_probs=51.5
Q ss_pred HHHHHHHhhCC-CCCcEEEEecccCCCCCCCccccCCCCeEEEEecCCCHHHHHHHHHHHHhhhccCCCCCCcccccccc
Q 007911 315 DAFVRGLSTAH-LLGRAQIVYDISLVPNSSGLFENSSGELIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTK 393 (585)
Q Consensus 315 e~i~~gL~~~~-~pGR~E~i~~~~~~~~~~~~~~~~~~~~~vilDgAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~ 393 (585)
++|++||++|. ++||||++... ++++||+||||||++|+++++.++...
T Consensus 12 ~~i~~~L~~f~gv~~R~E~i~~~--------------~g~~vi~DyaHnP~si~a~l~al~~~~---------------- 61 (163)
T 3mvn_A 12 DLGTENLYFQSNAQRRLEVKGVV--------------NNITVYDDFAHHPTAITATIDALRAKV---------------- 61 (163)
T ss_dssp ---------------CCEEEEEE--------------TTEEEEEECCCSHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhCCCCCCCeEEEecC--------------CCcEEEEcCCCCHHHHHHHHHHHHHhc----------------
Confidence 67899999998 99999999765 468999999999999999999988642
Q ss_pred ccchhHHHhhccccccccccccccccCccEEEEEecCCCC-ChhhhhHHHHHHhhhcCCCccEEEEeC
Q 007911 394 TNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCMEAR-HPQVLLPRLVSTCASSGTHFSKALFVP 460 (585)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~~~R-d~~~ll~~l~~~~~~~~~~fd~~if~~ 460 (585)
+.+|+++||++++++ ....+...+...+. .+|.+|+++
T Consensus 62 -------------------------~~~riivvf~~g~~s~r~k~~~~~~~~~~~----~aD~vi~~~ 100 (163)
T 3mvn_A 62 -------------------------GQQRILAVLEPRSNTMKMGVHKHELATSLQ----DADSVFIYQ 100 (163)
T ss_dssp -------------------------TTSCEEEEECCC---------CHHHHHHHT----TCSEEEEEC
T ss_pred -------------------------CCCcEEEEECCCCcchhhHHHHHHHHHHHh----cCCEEEEEC
Confidence 235789999998763 22345566665542 478888875
No 19
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=93.19 E-value=0.23 Score=51.97 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=32.2
Q ss_pred ccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEEcCC
Q 007911 76 LKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLFTSP 111 (585)
Q Consensus 76 l~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl~tSP 111 (585)
.+.|.|+||- ||++|+..|...|++.|++++++.|.
T Consensus 152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tg 190 (349)
T 2obn_A 152 CRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATG 190 (349)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCS
T ss_pred ceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEecc
Confidence 4679999985 99999999999999999999987754
No 20
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=91.80 E-value=0.12 Score=53.23 Aligned_cols=35 Identities=29% Similarity=0.229 Sum_probs=30.0
Q ss_pred cCccEEEEec--CCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 74 AELKVIHVSG--TKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 74 ~~l~vIhVTG--TnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
..-++|+|+| =-|||||+.-|+..|.+.|+||+++
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllI 82 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 82 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4568999997 3369999999999999999999875
No 21
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=90.71 E-value=0.17 Score=48.06 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=28.9
Q ss_pred cEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 007911 77 KVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 77 ~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl~ 108 (585)
++|.|++++ |||||+.-|+..|.+.|+||+++
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~ 36 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 578888875 79999999999999999999886
No 22
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=89.36 E-value=7.4 Score=41.78 Aligned_cols=35 Identities=20% Similarity=0.422 Sum_probs=30.2
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 76 LKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 76 l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~tS 110 (585)
..+|.++|.+ |||||+.-|+..|...|++|.++..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~ 136 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCS 136 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4688888875 6999999999999999999988764
No 23
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=89.32 E-value=0.38 Score=48.08 Aligned_cols=35 Identities=14% Similarity=0.323 Sum_probs=30.7
Q ss_pred cCccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 007911 74 AELKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 74 ~~l~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl~ 108 (585)
...++|.||+++ ||||++.-|+..|.+.|+||.++
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 456899999875 89999999999999999999664
No 24
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=88.58 E-value=0.35 Score=47.20 Aligned_cols=36 Identities=17% Similarity=0.157 Sum_probs=32.7
Q ss_pred cCccEEEEecC---CCCchHHHHHHHHHHHCCCCeEEEc
Q 007911 74 AELKVIHVSGT---KGKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 74 ~~l~vIhVTGT---nGKgST~aml~sIL~~~G~kvGl~t 109 (585)
++++.|-|||| -|||+++.-|...|++.|++|+.|-
T Consensus 2 ~~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K 40 (228)
T 3of5_A 2 NAMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK 40 (228)
T ss_dssp TTCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence 45788999999 4899999999999999999999986
No 25
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=88.08 E-value=0.39 Score=44.68 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=29.0
Q ss_pred ccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEEc
Q 007911 76 LKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 76 l~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl~t 109 (585)
+++|.|++++ ||||++..++..|...|++|.++-
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3689999665 599999999999999999997653
No 26
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=88.00 E-value=3.4 Score=44.31 Aligned_cols=36 Identities=22% Similarity=0.399 Sum_probs=30.8
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcCC
Q 007911 76 LKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTSP 111 (585)
Q Consensus 76 l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~tSP 111 (585)
-.+|.++|-+ |||||+..|+..|...|++|.+....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 4689999876 59999999999999999999887643
No 27
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=87.32 E-value=0.45 Score=47.32 Aligned_cols=36 Identities=22% Similarity=0.483 Sum_probs=33.0
Q ss_pred cCccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEEc
Q 007911 74 AELKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 74 ~~l~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl~t 109 (585)
++++.|-||||. |||+++.-|...|++.|++|+.|-
T Consensus 24 ~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fK 62 (251)
T 3fgn_A 24 SHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCK 62 (251)
T ss_dssp SSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 467899999997 899999999999999999999986
No 28
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=87.32 E-value=0.47 Score=48.09 Aligned_cols=35 Identities=14% Similarity=0.293 Sum_probs=30.6
Q ss_pred cCccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 007911 74 AELKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 74 ~~l~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl~ 108 (585)
...++|.||+++ ||||++.-|+..|.+.|.||.++
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 139 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 139 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 455899999885 89999999999999999999664
No 29
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=86.76 E-value=0.54 Score=44.02 Aligned_cols=36 Identities=28% Similarity=0.320 Sum_probs=30.9
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 75 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 75 ~l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~tS 110 (585)
++++|.|+|.. ||||++..|...|+..|++++.+.-
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence 56899999976 8999999999999999999998774
No 30
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=86.37 E-value=0.53 Score=44.91 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=28.5
Q ss_pred cEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 007911 77 KVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 77 ~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl~ 108 (585)
++|.|++++ ||||++..++..|.+.|+||.++
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAV 37 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 688888776 79999999999999999999775
No 31
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=85.89 E-value=0.55 Score=47.35 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=30.4
Q ss_pred cCccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 007911 74 AELKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 74 ~~l~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl~ 108 (585)
.+.++|.||+++ ||||++.-|+..|.+.|+||.++
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 127 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLI 127 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 455899999876 89999999999999999999664
No 32
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=85.52 E-value=1.1 Score=46.90 Aligned_cols=53 Identities=23% Similarity=0.243 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHhCCC---CcccCccEEEEecCC---CCchHHHHHHHHHHH------CCCCeEEE
Q 007911 56 KLQRMSMYLKILGLE---DRIAELKVIHVSGTK---GKGSTCTFCEAILRE------CGFRTGLF 108 (585)
Q Consensus 56 ~l~~~~~~L~~Lg~~---~p~~~l~vIhVTGTn---GKgST~aml~sIL~~------~G~kvGl~ 108 (585)
.++++..+...+++. .+....++|.|++.| ||||++.-|+..|.. .|+||.+.
T Consensus 85 ~~~~i~~~~~~~~~~~~~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlli 149 (398)
T 3ez2_A 85 SIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVI 149 (398)
T ss_dssp CHHHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEE
T ss_pred CHHHHHHHHHHhcccccCcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 688999888888753 344567899999665 799999999999984 69999663
No 33
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=84.29 E-value=0.63 Score=45.49 Aligned_cols=34 Identities=29% Similarity=0.326 Sum_probs=29.9
Q ss_pred CccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 007911 75 ELKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 75 ~l~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl~ 108 (585)
+.++|.|++++ ||||++..|+..|.+.|+||.++
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli 41 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLV 41 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEE
Confidence 45799999877 69999999999999999999764
No 34
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=84.11 E-value=1.1 Score=44.61 Aligned_cols=44 Identities=14% Similarity=0.179 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhCCCCcccCccEEEEec-----CCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 57 LQRMSMYLKILGLEDRIAELKVIHVSG-----TKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 57 l~~~~~~L~~Lg~~~p~~~l~vIhVTG-----TnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
+..+++.+..-+ ++|.|++ --||||++..|+..|...|+||.++
T Consensus 23 ~~~~~r~~~~~~--------~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 23 LEELRRILSNKN--------EAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp HHHHHHHHHHHC--------SCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHhcCCC--------cEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 556666665422 4555555 5789999999999999999999763
No 35
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=83.38 E-value=0.81 Score=44.49 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=27.9
Q ss_pred cEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 007911 77 KVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 77 ~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl~ 108 (585)
++|.|++++ ||||++..|+..|.+.|++|.++
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIV 37 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 578887766 79999999999999999999765
No 36
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=82.74 E-value=0.95 Score=43.67 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=28.0
Q ss_pred cEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 007911 77 KVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 77 ~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl~ 108 (585)
++|.|++++ ||||++..|+..|...|+||.++
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 688887766 69999999999999999999764
No 37
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=82.34 E-value=0.78 Score=43.87 Aligned_cols=34 Identities=12% Similarity=0.052 Sum_probs=29.2
Q ss_pred CccEEEEecCC---CCchHHHHHHHHHHHC-CCCeEEE
Q 007911 75 ELKVIHVSGTK---GKGSTCTFCEAILREC-GFRTGLF 108 (585)
Q Consensus 75 ~l~vIhVTGTn---GKgST~aml~sIL~~~-G~kvGl~ 108 (585)
+.++|.|++++ ||||++..|+..|... |+||.++
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~Vlli 40 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAV 40 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEE
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEE
Confidence 45789998665 6999999999999998 9999764
No 38
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=82.07 E-value=1 Score=44.10 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=28.9
Q ss_pred ccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 007911 76 LKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 76 l~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl~ 108 (585)
.++|.|++++ ||||++.-|+..|.+.|+||.++
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~Vlli 53 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGIL 53 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4689998877 59999999999999999999664
No 39
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=81.76 E-value=1.1 Score=44.21 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=31.8
Q ss_pred CccEEEEecC---CCCchHHHHHHHHHHHCCCCeEEEc
Q 007911 75 ELKVIHVSGT---KGKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 75 ~l~vIhVTGT---nGKgST~aml~sIL~~~G~kvGl~t 109 (585)
..+.|-|||| -|||+++.-|...|++.|++|+.|-
T Consensus 20 m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 20 QGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 3478999999 5899999999999999999999986
No 40
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=81.58 E-value=1.1 Score=44.76 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=28.0
Q ss_pred cEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 007911 77 KVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 77 ~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl~ 108 (585)
++|.|++++ ||||++.-|+..|.+.|+||.++
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 39 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVI 39 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 589998665 79999999999999999999653
No 41
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=80.92 E-value=0.98 Score=44.13 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=29.2
Q ss_pred cCccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 007911 74 AELKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 74 ~~l~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl~ 108 (585)
.+.++|.|++.+ ||||++..|+..|. .|+||.++
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~Vlli 61 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLI 61 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEE
Confidence 456899998887 59999999999999 99999764
No 42
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=79.50 E-value=6.6 Score=45.48 Aligned_cols=35 Identities=11% Similarity=-0.092 Sum_probs=31.4
Q ss_pred CccEEEEecC---CCCchHHHHHHHHHHHC-----CCCeEEEc
Q 007911 75 ELKVIHVSGT---KGKGSTCTFCEAILREC-----GFRTGLFT 109 (585)
Q Consensus 75 ~l~vIhVTGT---nGKgST~aml~sIL~~~-----G~kvGl~t 109 (585)
..+.|-|+|| -|||++++-|..+|+.. |++|+.|-
T Consensus 33 ~~~~l~I~gt~s~vGKT~vt~gL~r~l~~~~~~~~G~~V~~fK 75 (831)
T 4a0g_A 33 NHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLYLK 75 (831)
T ss_dssp SSCEEEEEESSSSSCHHHHHHHHHHHHHSCSSCCTTCEEEEEE
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHHHHhcccccCCceEEEEc
Confidence 4578999999 59999999999999999 99999886
No 43
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=78.48 E-value=1.3 Score=42.00 Aligned_cols=30 Identities=33% Similarity=0.330 Sum_probs=25.3
Q ss_pred EEEEecC---CCCchHHHHHHHHHHHCCCCeEEE
Q 007911 78 VIHVSGT---KGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 78 vIhVTGT---nGKgST~aml~sIL~~~G~kvGl~ 108 (585)
+|.|++. -||||++..|+..|...| +|.++
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~Vlli 34 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLI 34 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEE
Confidence 5777654 499999999999999999 99764
No 44
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=78.42 E-value=2.5 Score=43.88 Aligned_cols=36 Identities=11% Similarity=0.162 Sum_probs=31.1
Q ss_pred ccCccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 007911 73 IAELKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 73 ~~~l~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl~ 108 (585)
..+.++|.|++.+ ||||++.-++..|...|+||.+.
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlli 178 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYL 178 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEE
Confidence 3567899998876 69999999999999999999764
No 45
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=77.18 E-value=2.2 Score=44.63 Aligned_cols=54 Identities=19% Similarity=0.071 Sum_probs=38.1
Q ss_pred CChHHHHHHHHHhCCC---CcccCccEEEEecCC---CCchHHHHHHHHHH------HCCCCeEEE
Q 007911 55 GKLQRMSMYLKILGLE---DRIAELKVIHVSGTK---GKGSTCTFCEAILR------ECGFRTGLF 108 (585)
Q Consensus 55 ~~l~~~~~~L~~Lg~~---~p~~~l~vIhVTGTn---GKgST~aml~sIL~------~~G~kvGl~ 108 (585)
..++++.++.++.+.. .+..+.++|.|++.| |||||+..|+..|. ..|+||.+.
T Consensus 87 ~~~~~v~~~~~~~~~~~~r~~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlli 152 (403)
T 3ez9_A 87 LTIQNVIDIYAHRKIPKYRDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVI 152 (403)
T ss_dssp BCHHHHHHHHHHTTCCCHHHHSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEE
T ss_pred cCHHHHHHHHHHhccCCcCCCCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 3688888888877643 234567899999555 89999999999998 579999764
No 46
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=77.01 E-value=1.6 Score=40.63 Aligned_cols=32 Identities=34% Similarity=0.490 Sum_probs=27.8
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHCCCCeEE
Q 007911 76 LKVIHVSGTK--GKGSTCTFCEAILRECGFRTGL 107 (585)
Q Consensus 76 l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl 107 (585)
+++|+|.|.+ ||||++..|...+...|+++|.
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~ 35 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVAV 35 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEE
Confidence 3689999976 7999999999999999998875
No 47
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=74.61 E-value=1.7 Score=43.93 Aligned_cols=36 Identities=25% Similarity=0.173 Sum_probs=28.6
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHH-CCCCeEEEcC
Q 007911 75 ELKVIHVSGTK--GKGSTCTFCEAILRE-CGFRTGLFTS 110 (585)
Q Consensus 75 ~l~vIhVTGTn--GKgST~aml~sIL~~-~G~kvGl~tS 110 (585)
+-.+|.++|-| |||||+..|+..|.. .|++|++...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 34577777765 799999999999985 8999987653
No 48
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=74.50 E-value=4.3 Score=41.28 Aligned_cols=35 Identities=26% Similarity=0.297 Sum_probs=29.7
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 007911 75 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 75 ~l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~t 109 (585)
+..+|.|+|-| |||||+..|+..|...|.+|.+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 44689999987 699999999999999998887654
No 49
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=74.21 E-value=2.4 Score=42.28 Aligned_cols=35 Identities=29% Similarity=0.229 Sum_probs=28.7
Q ss_pred cCccEEEEec--CCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 74 AELKVIHVSG--TKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 74 ~~l~vIhVTG--TnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
.+.++|.|+| --||||++.-|+..|.+.|+||.++
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 4567888884 2469999999999999999999764
No 50
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=73.53 E-value=4.3 Score=41.54 Aligned_cols=35 Identities=17% Similarity=0.329 Sum_probs=29.9
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 007911 75 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 75 ~l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~t 109 (585)
+..+|.|+|.+ |||||+..|+..|...|.+|.+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45689999876 799999999999999999986654
No 51
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=72.54 E-value=2.4 Score=41.20 Aligned_cols=32 Identities=19% Similarity=0.192 Sum_probs=25.8
Q ss_pred cEEEEe--cCCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 77 KVIHVS--GTKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 77 ~vIhVT--GTnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
++|.|. |--||||++..|+..|.+.|+||.++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 455554 44579999999999999999999764
No 52
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=70.69 E-value=3.4 Score=43.09 Aligned_cols=36 Identities=31% Similarity=0.401 Sum_probs=32.5
Q ss_pred ccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEEcCC
Q 007911 76 LKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLFTSP 111 (585)
Q Consensus 76 l~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl~tSP 111 (585)
.+.|-|+||. |||+|+..+...|++.|++++.+.+.
T Consensus 169 ~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tg 207 (350)
T 2g0t_A 169 IKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATG 207 (350)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred ceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccC
Confidence 4679999985 99999999999999999999998765
No 53
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=70.39 E-value=3.2 Score=40.98 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=26.7
Q ss_pred ccEEEEe--cCCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 76 LKVIHVS--GTKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 76 l~vIhVT--GTnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
+++|.|. |--||||++.-|+..|.+.|+||.++
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 3566665 34589999999999999999999764
No 54
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=69.92 E-value=6 Score=36.89 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=29.2
Q ss_pred cCccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 007911 74 AELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 74 ~~l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~t 109 (585)
.+-.+|+|+|-+ ||||++.+|...|...|.++.+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 344689999987 799999999999988887775543
No 55
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=68.78 E-value=3.8 Score=41.62 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=29.2
Q ss_pred cCccEEEEec---CCCCchHHHHHHHHHHHCCCCeEEEc
Q 007911 74 AELKVIHVSG---TKGKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 74 ~~l~vIhVTG---TnGKgST~aml~sIL~~~G~kvGl~t 109 (585)
..+++|.|++ --||||+++-++..|.+.|+||.+..
T Consensus 11 ~gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 11 KGKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp TTBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 3446777774 45699999999999999999997754
No 56
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=67.67 E-value=11 Score=35.15 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=27.4
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCeEE
Q 007911 75 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGL 107 (585)
Q Consensus 75 ~l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl 107 (585)
+-.+|+|.|-| ||||++.+|..+|...|..+|.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~ 55 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEV 55 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEE
Confidence 44699999987 8999999999999977766655
No 57
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=64.95 E-value=4.4 Score=41.90 Aligned_cols=33 Identities=21% Similarity=0.179 Sum_probs=28.4
Q ss_pred ccEEEEecCC---CCchHHHHHHHHHHHCCCCeEEE
Q 007911 76 LKVIHVSGTK---GKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 76 l~vIhVTGTn---GKgST~aml~sIL~~~G~kvGl~ 108 (585)
+++|.|++.+ ||||++.-|+..|...|+||.+.
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlI 36 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYV 36 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 3688888766 69999999999999999999664
No 58
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=64.81 E-value=20 Score=36.69 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=25.7
Q ss_pred cCccEEEEecCC--CCchHHHHHHHHHHHC--CCCeEEE
Q 007911 74 AELKVIHVSGTK--GKGSTCTFCEAILREC--GFRTGLF 108 (585)
Q Consensus 74 ~~l~vIhVTGTn--GKgST~aml~sIL~~~--G~kvGl~ 108 (585)
.+..+|+|+|-+ ||||++..|..+|... +.+++++
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i 128 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVI 128 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEE
Confidence 344589999976 6999999999999752 3355543
No 59
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=63.26 E-value=6.6 Score=36.43 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=29.9
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 75 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 75 ~l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~tS 110 (585)
.+++|.|+|-+ ||||++..|...|...|+++|.+.-
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~ 42 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence 46799999985 7989988888888889999987653
No 60
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=58.78 E-value=9 Score=35.89 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=28.2
Q ss_pred EEEEecCCC--CchHHHHHHHHHHHCCCCeEEEcCCccccccceE
Q 007911 78 VIHVSGTKG--KGSTCTFCEAILRECGFRTGLFTSPHLIDVRERF 120 (585)
Q Consensus 78 vIhVTGTnG--KgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI 120 (585)
+|+|.|-|| |||+..++...+...|..++-|....+...+.++
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~Gi~~~g~~~~~~~~~~~~i 47 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRI 47 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEE
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCCEEEcCEecchhHhhhceE
Confidence 577777775 9999999999998778555433333333334443
No 61
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=57.18 E-value=5.3 Score=41.12 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=28.8
Q ss_pred CccEEEEec---CCCCchHHHHHHHHHHHCCCCeEEEc
Q 007911 75 ELKVIHVSG---TKGKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 75 ~l~vIhVTG---TnGKgST~aml~sIL~~~G~kvGl~t 109 (585)
..++|.|++ --||||+++-++..|...|+||.+..
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 446777774 45799999999999999999997764
No 62
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=55.96 E-value=5.5 Score=40.90 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=28.5
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 007911 75 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 75 ~l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~t 109 (585)
+-.+|++.|-| |||||+..|+..++..|.++.+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g 164 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAA 164 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34688888876 699999999999999888876554
No 63
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=53.56 E-value=12 Score=37.41 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=25.9
Q ss_pred CccEEEEecC--CCCchHHHHHHHHHHHCCCCeEEE
Q 007911 75 ELKVIHVSGT--KGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 75 ~l~vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~ 108 (585)
+..+|+|||- .||||++.+++..|...|.++.++
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI 39 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSI 39 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEe
Confidence 3468999996 489999999999998777765444
No 64
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=52.90 E-value=9.1 Score=38.96 Aligned_cols=33 Identities=15% Similarity=0.026 Sum_probs=27.0
Q ss_pred cEEEEe---cCCCCchHHHHHHHHHHHCCCCeEEEc
Q 007911 77 KVIHVS---GTKGKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 77 ~vIhVT---GTnGKgST~aml~sIL~~~G~kvGl~t 109 (585)
++|.|+ |--||||+++.++..|.+.|+||.+..
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 345555 456799999999999999999998764
No 65
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=51.00 E-value=15 Score=37.03 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=27.5
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 007911 76 LKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 76 l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~t 109 (585)
-.+|++.|-| |||||+..|+..+...+.++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4588888877 799999999999998777765443
No 66
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=50.93 E-value=6.8 Score=41.83 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=28.6
Q ss_pred ccEEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 76 LKVIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 76 l~vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~tS 110 (585)
..+|.|+|- -||||++.-|+..|...|++|.++..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 357777764 48999999999999999999987654
No 67
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=49.43 E-value=62 Score=33.68 Aligned_cols=28 Identities=14% Similarity=0.038 Sum_probs=24.5
Q ss_pred cCCCCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 83 GTKGKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 83 GTnGKgST~aml~sIL~~~G~kvGl~tS 110 (585)
|--||||++..++..|.+.|+||.+...
T Consensus 11 GG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 11 SGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 3457999999999999999999988765
No 68
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=49.09 E-value=18 Score=32.85 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=27.7
Q ss_pred CccEEEEecC--CCCchHHHHHHHHHHHCCCCeEEE
Q 007911 75 ELKVIHVSGT--KGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 75 ~l~vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~ 108 (585)
+-.+|.++|- .||||.+..|+..|...|+++.++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 3468889996 579999999999999988877443
No 69
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=48.50 E-value=13 Score=33.37 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=26.1
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCeEEE
Q 007911 77 KVIHVSGT--KGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 77 ~vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~ 108 (585)
++|.|+|. .||||.+..|+.-|...|+++..+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 46788886 789999999999999888876443
No 70
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=48.08 E-value=18 Score=36.33 Aligned_cols=35 Identities=29% Similarity=0.428 Sum_probs=29.0
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 76 LKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 76 l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~tS 110 (585)
..+|.++|-+ ||||++..++..+...|.++.+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4578888764 6999999999999999999876653
No 71
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=47.02 E-value=18 Score=32.75 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=24.4
Q ss_pred EEEEecC--CCCchHHHHHHHHHHHCCCCeE
Q 007911 78 VIHVSGT--KGKGSTCTFCEAILRECGFRTG 106 (585)
Q Consensus 78 vIhVTGT--nGKgST~aml~sIL~~~G~kvG 106 (585)
+|.|+|. .||||.+.+|+..|...|+++-
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 5888885 6899999999999999998774
No 72
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=45.87 E-value=10 Score=38.88 Aligned_cols=78 Identities=10% Similarity=0.096 Sum_probs=39.8
Q ss_pred hHHHHHHHHHhCCCCcccCccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCHHHHHHHH
Q 007911 57 LQRMSMYLKILGLEDRIAELKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITEDKFLFYF 136 (585)
Q Consensus 57 l~~~~~~L~~Lg~~~p~~~l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~~~f~~~f 136 (585)
++.+...|...=-..+...+-+.|-.|| |||+++..+..-|......-+ -|. -..+.|||..+.... ..|
T Consensus 29 ~~~i~~~L~~~i~~~~~~~lli~GpPGT-GKT~~v~~v~~~L~~~~~~~~---~~~----~~~v~INc~~~~t~~--~~~ 98 (318)
T 3te6_A 29 FTRIFLPIYDSLMSSQNKLFYITNADDS-TKFQLVNDVMDELITSSARKE---LPI----FDYIHIDALELAGMD--ALY 98 (318)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEECCCSH-HHHHHHHHHHHHHHHTTTTTS---SCC----EEEEEEETTCCC--H--HHH
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECCCCC-CHHHHHHHHHHHHHHHhhhcc---CCc----eEEEEEeccccCCHH--HHH
Confidence 4455544444311112233334444554 799999999998876421100 000 022788987766542 345
Q ss_pred HHHHHhhh
Q 007911 137 WECWHLLR 144 (585)
Q Consensus 137 ~~v~~~l~ 144 (585)
..+|+.|.
T Consensus 99 ~~I~~~L~ 106 (318)
T 3te6_A 99 EKIWFAIS 106 (318)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhc
Confidence 55666663
No 73
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=45.84 E-value=20 Score=37.28 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=27.9
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 007911 75 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 75 ~l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~t 109 (585)
+-.+|++.|-| |||||+..|+..+...+.++.+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 34588888877 799999999999998777765443
No 74
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=45.58 E-value=18 Score=36.49 Aligned_cols=34 Identities=32% Similarity=0.557 Sum_probs=30.8
Q ss_pred cCccEEEEec----CCCCchHHHHHHHHHHHCCCCeEE
Q 007911 74 AELKVIHVSG----TKGKGSTCTFCEAILRECGFRTGL 107 (585)
Q Consensus 74 ~~l~vIhVTG----TnGKgST~aml~sIL~~~G~kvGl 107 (585)
..++.|-||| +=|||-|++-+..+|++.|++|-.
T Consensus 21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~ 58 (295)
T 2vo1_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTS 58 (295)
T ss_dssp CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccceEEEEcCCcccccccHHHHHHHHHHHHHCCCccee
Confidence 5678999999 789999999999999999999854
No 75
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=45.40 E-value=23 Score=36.13 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=35.2
Q ss_pred HHHHHHhCCCCcccCccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 007911 61 SMYLKILGLEDRIAELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 61 ~~~L~~Lg~~~p~~~l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~t 109 (585)
+.++..+.. ...+..+|+|+|-+ ||||+...+...+...|.++.++.
T Consensus 43 ~~~~~~l~~--~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 43 TQLLDAIMP--YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp HHHHHHHGG--GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhCCc--ccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 345555542 23456789999986 699999999999998898887654
No 76
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=45.30 E-value=25 Score=35.94 Aligned_cols=48 Identities=19% Similarity=0.193 Sum_probs=34.7
Q ss_pred HHHHHHHhCCCCcccCccEEEEecC--CCCchHHHHHHHHHHHCCCCeEEEc
Q 007911 60 MSMYLKILGLEDRIAELKVIHVSGT--KGKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 60 ~~~~L~~Lg~~~p~~~l~vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~t 109 (585)
.+.+++.+. ....+..+|+|+|. .||||++.-+...|...|++++++.
T Consensus 65 ~~~~~~~~~--~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 65 AQQLLLRLL--PDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp HHHHHHHHG--GGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHhH--hhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 344455543 12245678999985 4799999999999988999998764
No 77
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=44.46 E-value=18 Score=38.50 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=29.4
Q ss_pred CccEEEEecC--CCCchHHHHHHHHHHHC-CCCeEEEcC
Q 007911 75 ELKVIHVSGT--KGKGSTCTFCEAILREC-GFRTGLFTS 110 (585)
Q Consensus 75 ~l~vIhVTGT--nGKgST~aml~sIL~~~-G~kvGl~tS 110 (585)
+.++|.|+|. -|||||+.-|+..|... |++|.++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~ 137 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSA 137 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 3467877764 47999999999999998 999987653
No 78
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=44.33 E-value=28 Score=37.85 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=28.8
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 007911 75 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 75 ~l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~t 109 (585)
+.++|.|+|.. |||||+.-|+..|...|+++.+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 45688888864 799999999999999999998765
No 79
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=43.94 E-value=20 Score=32.28 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=24.7
Q ss_pred cEEEEecCC--CCchHHHHHHHHHHHCCCCe
Q 007911 77 KVIHVSGTK--GKGSTCTFCEAILRECGFRT 105 (585)
Q Consensus 77 ~vIhVTGTn--GKgST~aml~sIL~~~G~kv 105 (585)
.+|.++|.+ ||||++.+|+..|...|+++
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~ 36 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPC 36 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcE
Confidence 578899975 79999999999998878765
No 80
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=43.25 E-value=6.8 Score=36.99 Aligned_cols=30 Identities=17% Similarity=0.041 Sum_probs=24.1
Q ss_pred EEEec--CCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 79 IHVSG--TKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 79 IhVTG--TnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
|.|+| --||||++.-++..|.+.|+||.++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 44443 4469999999999999999999664
No 81
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=43.22 E-value=23 Score=32.54 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=27.0
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCeEEE
Q 007911 77 KVIHVSGT--KGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 77 ~vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~ 108 (585)
.+|.|+|- .||||++..|+.-|...|+.+-.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 57888885 799999999999999888887443
No 82
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=43.18 E-value=15 Score=36.81 Aligned_cols=33 Identities=33% Similarity=0.594 Sum_probs=29.5
Q ss_pred cCccEEEEec----CCCCchHHHHHHHHHHHCCCCeE
Q 007911 74 AELKVIHVSG----TKGKGSTCTFCEAILRECGFRTG 106 (585)
Q Consensus 74 ~~l~vIhVTG----TnGKgST~aml~sIL~~~G~kvG 106 (585)
..++.|-||| .=|||-|++-+..+|++.|++|-
T Consensus 21 ~~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt 57 (294)
T 2c5m_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVT 57 (294)
T ss_dssp CCCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEE
T ss_pred eceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeE
Confidence 4578999999 56999999999999999999984
No 83
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=42.73 E-value=13 Score=37.61 Aligned_cols=48 Identities=13% Similarity=0.196 Sum_probs=31.4
Q ss_pred CccEEEEecCCC--CchHHHHHHHHHHHCCCCeEEEcCCccccccceEEECCEecCH
Q 007911 75 ELKVIHVSGTKG--KGSTCTFCEAILRECGFRTGLFTSPHLIDVRERFRINGLDITE 129 (585)
Q Consensus 75 ~l~vIhVTGTnG--KgST~aml~sIL~~~G~kvGl~tSPhL~~~rERI~inG~~is~ 129 (585)
+++++.|+|-|| |||....+.... .|+|++++..- +. .|.|||.++..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~d----~G-~i~idg~~l~~ 52 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENE----FG-EVSVDDQLIGD 52 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECSS----CC-SCCEEEEEECT
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEec----Cc-ccCccHHHHhC
Confidence 578999999886 555554444432 57888876421 12 27788888753
No 84
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=42.61 E-value=28 Score=38.03 Aligned_cols=35 Identities=26% Similarity=0.234 Sum_probs=30.5
Q ss_pred cCccEEEEecC------CCCchHHHHHHHHHHHCCCCeEEE
Q 007911 74 AELKVIHVSGT------KGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 74 ~~l~vIhVTGT------nGKgST~aml~sIL~~~G~kvGl~ 108 (585)
.+.++|.||.+ -|||||+.=|+..|.+.|.||.+.
T Consensus 55 ~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLLi 95 (557)
T 3pzx_A 55 PDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC 95 (557)
T ss_dssp CCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEEE
Confidence 35689999997 479999999999999999998664
No 85
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=42.40 E-value=31 Score=37.60 Aligned_cols=34 Identities=24% Similarity=0.140 Sum_probs=27.3
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEE
Q 007911 75 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 75 ~l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~ 108 (585)
+-.+|+|.|-| ||||++..|..+++..|.++.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 34588888887 69999999999999887776443
No 86
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=42.08 E-value=23 Score=35.75 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=27.5
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 007911 76 LKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 76 l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~t 109 (585)
-.+|+|.|-| ||||+...|+.++...|.++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4588888876 699999999999998877765544
No 87
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=41.04 E-value=19 Score=32.42 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=23.6
Q ss_pred EEEEecC--CCCchHHHHHHHHHHHCCCCe
Q 007911 78 VIHVSGT--KGKGSTCTFCEAILRECGFRT 105 (585)
Q Consensus 78 vIhVTGT--nGKgST~aml~sIL~~~G~kv 105 (585)
+|.|+|. .||||.+.+|+.-|...|+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~ 31 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFV 31 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 5777775 589999999999998888875
No 88
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=40.92 E-value=28 Score=31.86 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=26.8
Q ss_pred CccEEEEecC--CCCchHHHHHHHHHHHCCCCeE
Q 007911 75 ELKVIHVSGT--KGKGSTCTFCEAILRECGFRTG 106 (585)
Q Consensus 75 ~l~vIhVTGT--nGKgST~aml~sIL~~~G~kvG 106 (585)
+-.+|.|+|. .||||.+.+|+.-|...++.+-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~ 42 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK 42 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 3457899986 6999999999999998888773
No 89
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=40.83 E-value=16 Score=39.00 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.4
Q ss_pred EEEEecCCCCchH-HHHHHHHHHHC
Q 007911 78 VIHVSGTKGKGST-CTFCEAILREC 101 (585)
Q Consensus 78 vIhVTGTnGKgST-~aml~sIL~~~ 101 (585)
+|+|| ||||++| +.+|...|.+.
T Consensus 123 ~iaIs-T~Gksp~la~~ir~~ie~~ 146 (457)
T 1pjq_A 123 MVAVS-SGGTSPVLARLLREKLESL 146 (457)
T ss_dssp EEEEE-CTTSCHHHHHHHHHHHHHH
T ss_pred EEEEE-CCCCChHHHHHHHHHHHHh
Confidence 89999 9999998 88898888863
No 90
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=39.80 E-value=16 Score=37.40 Aligned_cols=28 Identities=21% Similarity=0.151 Sum_probs=24.3
Q ss_pred ecCCCCchHHHHHHHHHHHCCCCeEEEc
Q 007911 82 SGTKGKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 82 TGTnGKgST~aml~sIL~~~G~kvGl~t 109 (585)
-|--||||++.-++..|.+.|+||.+..
T Consensus 24 kGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 24 KGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp STTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3666899999999999999999997754
No 91
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=39.55 E-value=22 Score=34.58 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=27.7
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 007911 76 LKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 76 l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~t 109 (585)
-.+|.|.|-. ||||.+..|...|...|++++.++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 3688888865 799999999999999999844443
No 92
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=39.38 E-value=18 Score=37.25 Aligned_cols=34 Identities=26% Similarity=0.226 Sum_probs=26.7
Q ss_pred cEEEE--ecCCCCchHHHHHHHHHH--HCCCCeEEEcC
Q 007911 77 KVIHV--SGTKGKGSTCTFCEAILR--ECGFRTGLFTS 110 (585)
Q Consensus 77 ~vIhV--TGTnGKgST~aml~sIL~--~~G~kvGl~tS 110 (585)
+++-+ -|--||||+++.++..|. ..|+||.+...
T Consensus 19 ~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~ 56 (348)
T 3io3_A 19 KWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIST 56 (348)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 44444 456689999999999999 89999977543
No 93
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=38.06 E-value=43 Score=31.29 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=28.1
Q ss_pred CccEEEEecCCCCchHHHHHHHHHHH--CCCCeEEEc
Q 007911 75 ELKVIHVSGTKGKGSTCTFCEAILRE--CGFRTGLFT 109 (585)
Q Consensus 75 ~l~vIhVTGTnGKgST~aml~sIL~~--~G~kvGl~t 109 (585)
+-+++-++|.-|+|-|++++..+.+. .|++|.+++
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 34689999998888888888777665 799998876
No 94
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=37.97 E-value=11 Score=35.55 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=26.8
Q ss_pred EEEec--CCCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 007911 79 IHVSG--TKGKGSTCTFCEAILRECGFRTGLFTSPH 112 (585)
Q Consensus 79 IhVTG--TnGKgST~aml~sIL~~~G~kvGl~tSPh 112 (585)
|.+-| -.||||-+.+|..-|++.|+++-+..-|.
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~ 38 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPG 38 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 44455 36899999999999999999986655554
No 95
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=37.37 E-value=16 Score=35.13 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=20.6
Q ss_pred CccEEEEecCC--CCchHHHHHHHHH
Q 007911 75 ELKVIHVSGTK--GKGSTCTFCEAIL 98 (585)
Q Consensus 75 ~l~vIhVTGTn--GKgST~aml~sIL 98 (585)
+-.+|+|+|-| ||||++.+|..+|
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999988 7999999999887
No 96
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=37.36 E-value=12 Score=34.39 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=16.8
Q ss_pred cEEEEecCC--CCchHHHHHHH
Q 007911 77 KVIHVSGTK--GKGSTCTFCEA 96 (585)
Q Consensus 77 ~vIhVTGTn--GKgST~aml~s 96 (585)
.+|+|+|.+ ||||++.+|+.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 479999976 79999988887
No 97
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=37.05 E-value=24 Score=37.49 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=29.1
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 75 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 75 ~l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~tS 110 (585)
+-.+|.|+|-+ ||||++..|+..|...|.+|.+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 34578887764 7999999999999999999877653
No 98
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=36.36 E-value=28 Score=33.14 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=27.3
Q ss_pred cEEEEecCCCCchHHHHHHHHHHHC--CCCeEEEc
Q 007911 77 KVIHVSGTKGKGSTCTFCEAILREC--GFRTGLFT 109 (585)
Q Consensus 77 ~vIhVTGTnGKgST~aml~sIL~~~--G~kvGl~t 109 (585)
-.|+|-+-||||.|++-+.-.++++ |+||.++.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4677777889999999999999975 78998763
No 99
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=36.21 E-value=32 Score=30.84 Aligned_cols=32 Identities=19% Similarity=0.149 Sum_probs=24.4
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHH-HCCCCeEE
Q 007911 76 LKVIHVSGTK--GKGSTCTFCEAILR-ECGFRTGL 107 (585)
Q Consensus 76 l~vIhVTGTn--GKgST~aml~sIL~-~~G~kvGl 107 (585)
-..+.+.|-+ ||||++..+...+. ..|.++..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~ 72 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF 72 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE
Confidence 3678888865 69999999988887 67776533
No 100
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=35.24 E-value=57 Score=35.46 Aligned_cols=95 Identities=17% Similarity=0.316 Sum_probs=54.2
Q ss_pred HHHHHHHHhhhCCCcEEEEeecCCCCcccccccc--------CCcEEEEcC-C-------CcccccccCCCHH-------
Q 007911 160 LTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIK--------EPVVCGVTS-L-------GMDHMELLGNTLN------- 216 (585)
Q Consensus 160 lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~--------~P~vavITN-I-------g~DHld~lG~Tle------- 216 (585)
-|-+|++. .||+|-|.|-|-.+-+-.+++ +|+++||.. | |..--++-.++++
T Consensus 273 Atk~ALkl-----aDyvVTEAGFGADlGaEKF~dIKCR~~gl~P~avVlVATvRALK~hGG~~~~~l~~enl~al~~G~~ 347 (543)
T 3do6_A 273 ATKMAMKL-----SEYTVTEAGFGADLGAEKFIDFVSRVGGFYPNAAVLVATVRALKYHGGANLKNIHEENLEALKEGFK 347 (543)
T ss_dssp HHHHHHHH-----CSEEEEEBSSSTTTHHHHHHHTHHHHHTCCCSEEEEEECHHHHHHHTTCCGGGTTSCCHHHHHHHHH
T ss_pred HHHHHHhc-----cCeEEEecccccccchHhhcCccccccCCCCCEEEEEeehHHHHhcCCCChhhcCccCHHHHHHHHH
Confidence 34555555 399999999884432221111 688766542 2 2222222223343
Q ss_pred HHHHHHhcccCCCCcEEe--e---CCchHHHHHHHHHHHhcCccEEEe
Q 007911 217 DIAFHKAGIFKPQIPAFT--V---PQLSEAMSVLQDRALELMVPLEVA 259 (585)
Q Consensus 217 ~IA~~KagI~k~g~~aV~--~---~qd~~~~~vl~~~a~~~~~~l~~~ 259 (585)
++.+|=..+-+-|.|+|+ | .|.++-.+.+++.|++.|++....
T Consensus 348 NL~kHIen~~~fGvpvVVaiN~F~tDT~aEi~~v~~~~~~~G~~~~~s 395 (543)
T 3do6_A 348 NLRVHVENLRKFNLPVVVALNRFSTDTEKEIAYVVKECEKLGVRVAVS 395 (543)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCTTCCHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 444444444456888775 3 243555678899999999876543
No 101
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=35.10 E-value=18 Score=33.35 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=20.4
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHH
Q 007911 76 LKVIHVSGTK--GKGSTCTFCEAILR 99 (585)
Q Consensus 76 l~vIhVTGTn--GKgST~aml~sIL~ 99 (585)
-.+|+|+|-| ||||++.+|..++.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999987 59999999998885
No 102
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=34.70 E-value=27 Score=35.87 Aligned_cols=34 Identities=12% Similarity=0.035 Sum_probs=27.5
Q ss_pred cEEEEe---cCCCCchHHHHHHHHHH--HCCCCeEEEcC
Q 007911 77 KVIHVS---GTKGKGSTCTFCEAILR--ECGFRTGLFTS 110 (585)
Q Consensus 77 ~vIhVT---GTnGKgST~aml~sIL~--~~G~kvGl~tS 110 (585)
++|.|+ |--||||+++-++..|. +.|+||.++..
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~ 56 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIST 56 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 455555 56689999999999999 89999977643
No 103
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=34.62 E-value=51 Score=33.42 Aligned_cols=50 Identities=22% Similarity=0.257 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCC-CcccCccEEEE----ecCCCCchHHHHHHHHHHHCCCCeEEEc
Q 007911 58 QRMSMYLKILGLE-DRIAELKVIHV----SGTKGKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 58 ~~~~~~L~~Lg~~-~p~~~l~vIhV----TGTnGKgST~aml~sIL~~~G~kvGl~t 109 (585)
-.+|+++-+.|.- ...-.+|||.| .|-.|||-++.+|...|+. +++|..+
T Consensus 17 ~~~R~~ly~~~~~k~~~~~vPVI~VGNitvGGTGKTP~vi~L~~~L~~--~~~~ils 71 (315)
T 4ehx_A 17 INFRNTLYDKGFLKIKKLPVPVISVGNLSVGGSGKTSFVMYLADLLKD--KRVCILS 71 (315)
T ss_dssp HHHHHHHHHTTCSCCBCCSSCEEEEEESBSSCCSHHHHHHHHHHHTTT--SCEEEEE
T ss_pred HHHHHHHHhccccccccCCCCEEEECCEEeCCCChHHHHHHHHHHHhh--cCceEEe
Confidence 3456666666643 22345789988 7999999999999999975 4566543
No 104
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=33.74 E-value=32 Score=31.65 Aligned_cols=34 Identities=21% Similarity=-0.052 Sum_probs=25.4
Q ss_pred ccEEEEecCCC--CchHHHHHHHHHHHCCCCeEEEc
Q 007911 76 LKVIHVSGTKG--KGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 76 l~vIhVTGTnG--KgST~aml~sIL~~~G~kvGl~t 109 (585)
-.++.|+|-|| |||++..+...+...|.++.+++
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 36899999875 89998888876666666675554
No 105
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=33.04 E-value=20 Score=32.99 Aligned_cols=20 Identities=15% Similarity=0.348 Sum_probs=16.9
Q ss_pred cEEEEecCC--CCchHHHHHHH
Q 007911 77 KVIHVSGTK--GKGSTCTFCEA 96 (585)
Q Consensus 77 ~vIhVTGTn--GKgST~aml~s 96 (585)
.+|+++|.+ ||||++.+|+.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 479999986 79999988876
No 106
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=32.27 E-value=37 Score=34.26 Aligned_cols=34 Identities=29% Similarity=0.352 Sum_probs=26.6
Q ss_pred cCccEEEEecCC--CCchHHHHHHHHHHHC-C-CCeEE
Q 007911 74 AELKVIHVSGTK--GKGSTCTFCEAILREC-G-FRTGL 107 (585)
Q Consensus 74 ~~l~vIhVTGTn--GKgST~aml~sIL~~~-G-~kvGl 107 (585)
.+-.+|+|.|-| ||||++.+|..+|... | .++++
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~ 125 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDL 125 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEE
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEE
Confidence 445799999987 7999999999999864 3 34554
No 107
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=32.13 E-value=50 Score=33.58 Aligned_cols=47 Identities=13% Similarity=0.243 Sum_probs=34.6
Q ss_pred HHHHHHhCCCCcccCccEEEEecCCC--CchHHHHHHHHHHHCCCCeEEEc
Q 007911 61 SMYLKILGLEDRIAELKVIHVSGTKG--KGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 61 ~~~L~~Lg~~~p~~~l~vIhVTGTnG--KgST~aml~sIL~~~G~kvGl~t 109 (585)
+.+++.+.. ...+-.+|+|+|-|| |||+...+...+...+.++.+.+
T Consensus 42 ~~~l~~i~~--~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 42 RDLIDAVLP--QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp HHHHHHHGG--GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhCCc--ccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 346666653 234557899999986 89999999999988777776554
No 108
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=30.96 E-value=22 Score=32.31 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=19.1
Q ss_pred cccCccEEEEecC--CCCchHHHHHHHH
Q 007911 72 RIAELKVIHVSGT--KGKGSTCTFCEAI 97 (585)
Q Consensus 72 p~~~l~vIhVTGT--nGKgST~aml~sI 97 (585)
+..+..+|+|+|. .||||++.+|+..
T Consensus 4 ~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 4 EAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp --CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 3445678999996 4899999888763
No 109
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=30.91 E-value=38 Score=33.75 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=28.8
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 007911 75 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 75 ~l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~t 109 (585)
+-.+|.|+|-+ ||||++..++..+...|.+|.+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 34688888864 699999999999999998886654
No 110
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=30.79 E-value=44 Score=31.80 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=24.6
Q ss_pred cEEEEecCC--CCchHHHHHHHHHHHCCC-Ce
Q 007911 77 KVIHVSGTK--GKGSTCTFCEAILRECGF-RT 105 (585)
Q Consensus 77 ~vIhVTGTn--GKgST~aml~sIL~~~G~-kv 105 (585)
.+|.+.|.. ||||.+..|...|...|+ .+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v 35 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDM 35 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc
Confidence 478888865 599999999999999998 44
No 111
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=30.58 E-value=22 Score=37.67 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=25.5
Q ss_pred ccEEEEecCCCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 007911 76 LKVIHVSGTKGKGSTCTFCEAILRECGFRTGLFTSPH 112 (585)
Q Consensus 76 l~vIhVTGTnGKgST~aml~sIL~~~G~kvGl~tSPh 112 (585)
+-+.|-+|| |||++...+...|...|.+..+..+|.
T Consensus 48 ~li~G~aGT-GKT~ll~~~~~~l~~~~~~~il~~a~T 83 (459)
T 3upu_A 48 VTINGPAGT-GATTLTKFIIEALISTGETGIILAAPT 83 (459)
T ss_dssp EEEECCTTS-CHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred EEEEeCCCC-CHHHHHHHHHHHHHhcCCceEEEecCc
Confidence 345566665 999999999988988887444445554
No 112
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=30.27 E-value=13 Score=34.34 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=26.0
Q ss_pred EEEEecC--CCCchHHHHHHHHHHHCCCCeEEEcCC
Q 007911 78 VIHVSGT--KGKGSTCTFCEAILRECGFRTGLFTSP 111 (585)
Q Consensus 78 vIhVTGT--nGKgST~aml~sIL~~~G~kvGl~tSP 111 (585)
+|.|.|- .||||.+..|...|...|++++++.-|
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~~ 37 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP 37 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 4555553 489999999999999888888766544
No 113
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=29.12 E-value=28 Score=34.85 Aligned_cols=29 Identities=28% Similarity=0.059 Sum_probs=23.8
Q ss_pred cCccEEEEecC--CCCchHHHHHHHHHHHCC
Q 007911 74 AELKVIHVSGT--KGKGSTCTFCEAILRECG 102 (585)
Q Consensus 74 ~~l~vIhVTGT--nGKgST~aml~sIL~~~G 102 (585)
.+-.+|+|+|. .||||++..|...|...|
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g 59 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKY 59 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcC
Confidence 34468999996 579999999999998754
No 114
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=28.80 E-value=27 Score=38.47 Aligned_cols=35 Identities=23% Similarity=0.507 Sum_probs=25.4
Q ss_pred cEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcCCc
Q 007911 77 KVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTSPH 112 (585)
Q Consensus 77 ~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~tSPh 112 (585)
+++-|+|-. |||||...+...|...|+++-+ .+|.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~-~ApT 241 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGL-CAPT 241 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE-EESS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE-ecCc
Confidence 355555533 8999999999999999988754 4443
No 115
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=28.80 E-value=22 Score=32.45 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=18.5
Q ss_pred cEEEEecCC--CCchHHHHHHHHH
Q 007911 77 KVIHVSGTK--GKGSTCTFCEAIL 98 (585)
Q Consensus 77 ~vIhVTGTn--GKgST~aml~sIL 98 (585)
.+|+|+|-| ||||++.+|...+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999987 6999999888765
No 116
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=28.66 E-value=28 Score=34.80 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=21.7
Q ss_pred cCccEEEEecCC--CCchHHHHHHHHHH
Q 007911 74 AELKVIHVSGTK--GKGSTCTFCEAILR 99 (585)
Q Consensus 74 ~~l~vIhVTGTn--GKgST~aml~sIL~ 99 (585)
.+-.+|+|+|-| ||||++.+|..++.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344699999987 59999999999886
No 117
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=28.65 E-value=2.8e+02 Score=23.75 Aligned_cols=105 Identities=14% Similarity=0.115 Sum_probs=66.1
Q ss_pred eEEEEecCCCHHHHHHHHHHHHhhhccCCCCCCccccccccccchhHHHhhccccccccccccccccCccEEEEEecCCC
Q 007911 353 LIFYLDGAHTAESMEACAKWFSSVVKGSGNSSLSSMSSTTKTNNMEEVVQRNGYIGHKMEKTKHANKISKQILLFNCMEA 432 (585)
Q Consensus 353 ~~vilDgAHnp~sl~a~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvFg~~~~ 432 (585)
..+-++|-=|++.++.+...+...+.+. ..+..+.++.+.....
T Consensus 22 l~v~~~G~lt~~d~~~l~~~l~~~l~~~------------------------------------~~~~i~ll~~~~~f~G 65 (126)
T 2q3l_A 22 LAFKAVGKLTHEDYEQMTPLLESALAGI------------------------------------KTPEIVALIDITELDG 65 (126)
T ss_dssp EEEEEEEEECHHHHHHHHHHHHHHTTTC------------------------------------CSSCEEEEEEEEEEEE
T ss_pred EEEEEEeeECHHHHHHHHHHHHHHHHhC------------------------------------CCceEEEEEEecCCCC
Confidence 4566788889999999888777764320 0111334444443334
Q ss_pred CChhhhhHHHHHHhhhcCCCccEEEEeCCCcccccccCCCCccCCCccccchhHHHHHHHHHHHhhcCCCCccccccccc
Q 007911 433 RHPQVLLPRLVSTCASSGTHFSKALFVPSVSTYSKVTSGSSFIPLAISGKDLSWQFSLQRLWERIIHGADPVLEKSSMKE 512 (585)
Q Consensus 433 Rd~~~ll~~l~~~~~~~~~~fd~~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~w~~l~~~~~~~~~~~~~~~ 512 (585)
-++..+...+.-.. .+...|+++-++++. .|++.+.++-.-+..
T Consensus 66 ~~~~a~~~d~k~~~-~h~~~~~RiAvV~d~----------------------~W~~~~~~~~~~~~~------------- 109 (126)
T 2q3l_A 66 LSLHAAWDDLKLGL-KHGKEFKRVAIIGQG----------------------ELQEWATRVANWFTP------------- 109 (126)
T ss_dssp ECHHHHHHHHHHHH-HHGGGEEEEEEECCS----------------------HHHHHHHHHHHHHCS-------------
T ss_pred CCHHHHHHHHHhhh-hHHhcCCEEEEEcCh----------------------HHHHHHHHHHhhccC-------------
Confidence 45677776654222 333469999998765 466666665544421
Q ss_pred ccccCCCccccccCCCCCCCCcccCccceecCCHHHHHHHHH
Q 007911 513 STEILPPCKFLYEDAPLCSPAEECFACSAVIPSLPLTIKWLR 554 (585)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~si~~ai~~~~ 554 (585)
..+.+|...++|.+|++
T Consensus 110 -------------------------~evk~F~~~~~A~~Wl~ 126 (126)
T 2q3l_A 110 -------------------------GEFKFFEDKRDALDWLC 126 (126)
T ss_dssp -------------------------SEEEEESCHHHHHHHHC
T ss_pred -------------------------CceeccCCHHHHHHHhC
Confidence 25889999999999983
No 118
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=28.63 E-value=15 Score=33.56 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=19.4
Q ss_pred cEEEEecCC--CCchHHHHHHHHHH
Q 007911 77 KVIHVSGTK--GKGSTCTFCEAILR 99 (585)
Q Consensus 77 ~vIhVTGTn--GKgST~aml~sIL~ 99 (585)
++|+|.|-| ||||++.+|...+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 468899987 59999999998886
No 119
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=28.53 E-value=28 Score=31.76 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=18.7
Q ss_pred cEEEEecCC--CCchHHHHHHHHH
Q 007911 77 KVIHVSGTK--GKGSTCTFCEAIL 98 (585)
Q Consensus 77 ~vIhVTGTn--GKgST~aml~sIL 98 (585)
++|+|+|.. ||||++.+|+..|
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 389999974 8999999998876
No 120
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=28.40 E-value=40 Score=36.87 Aligned_cols=34 Identities=26% Similarity=0.253 Sum_probs=27.4
Q ss_pred cEEEEec--CCCCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 77 KVIHVSG--TKGKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 77 ~vIhVTG--TnGKgST~aml~sIL~~~G~kvGl~tS 110 (585)
+++-++| --||||++..++..|.+.|+||.+...
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~ 44 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVST 44 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 4555554 478999999999999999999988654
No 121
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=27.58 E-value=80 Score=27.86 Aligned_cols=35 Identities=23% Similarity=0.155 Sum_probs=27.2
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEc
Q 007911 75 ELKVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFT 109 (585)
Q Consensus 75 ~l~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~t 109 (585)
.-..+.+.|-+ |||+++..+...+...|+++..+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 34578888876 799999999999988787765443
No 122
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=27.56 E-value=29 Score=32.21 Aligned_cols=22 Identities=36% Similarity=0.683 Sum_probs=17.9
Q ss_pred cEEEEecCC--CCchHHHHHHHHH
Q 007911 77 KVIHVSGTK--GKGSTCTFCEAIL 98 (585)
Q Consensus 77 ~vIhVTGTn--GKgST~aml~sIL 98 (585)
.+|+|+|.+ ||||++.+|+..|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999986 5999998887765
No 123
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=27.40 E-value=30 Score=30.62 Aligned_cols=25 Identities=20% Similarity=0.196 Sum_probs=19.1
Q ss_pred cCccEEEEecC--CCCchHHHHHHHHH
Q 007911 74 AELKVIHVSGT--KGKGSTCTFCEAIL 98 (585)
Q Consensus 74 ~~l~vIhVTGT--nGKgST~aml~sIL 98 (585)
..+.+|.|+|. .||||++.+|+.-|
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999996 68999999998776
No 124
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=27.01 E-value=29 Score=32.66 Aligned_cols=25 Identities=12% Similarity=0.003 Sum_probs=15.5
Q ss_pred CccEEEEecCC--CCchHHHHHH-HHHH
Q 007911 75 ELKVIHVSGTK--GKGSTCTFCE-AILR 99 (585)
Q Consensus 75 ~l~vIhVTGTn--GKgST~aml~-sIL~ 99 (585)
+-.+|+|+|-| ||||++.+|. ..+.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 34689999998 6999999998 7764
No 125
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=26.80 E-value=27 Score=33.54 Aligned_cols=27 Identities=37% Similarity=0.490 Sum_probs=21.1
Q ss_pred cCccEEEEecC--CCCchHHHHHHHHHHH
Q 007911 74 AELKVIHVSGT--KGKGSTCTFCEAILRE 100 (585)
Q Consensus 74 ~~l~vIhVTGT--nGKgST~aml~sIL~~ 100 (585)
.+..+|+|+|. .||||++.+|+..|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34468999996 5899999999887653
No 126
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=26.78 E-value=55 Score=31.01 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=28.6
Q ss_pred cEEEEecCC--CCchHHHHHHHHHHHCCCCeEEEcCC
Q 007911 77 KVIHVSGTK--GKGSTCTFCEAILRECGFRTGLFTSP 111 (585)
Q Consensus 77 ~vIhVTGTn--GKgST~aml~sIL~~~G~kvGl~tSP 111 (585)
.+|.+.|.. ||||.+..|..-|...|+++-+..-|
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p 43 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREP 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCC
Confidence 578888865 79999999999999999988544334
No 127
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=26.41 E-value=54 Score=35.79 Aligned_cols=92 Identities=18% Similarity=0.299 Sum_probs=50.1
Q ss_pred HHHHHHHHhhhCCCcEEEEeecCCCCcccccccc--------CCcEEEEcC-C-------CcccccccCCCHH-------
Q 007911 160 LTVLAFKIFVCEQVDVAIIEVGLGGEKDSTNVIK--------EPVVCGVTS-L-------GMDHMELLGNTLN------- 216 (585)
Q Consensus 160 lTllA~~~F~~~~vd~aVlEvG~gGr~D~Tnvi~--------~P~vavITN-I-------g~DHld~lG~Tle------- 216 (585)
-|-+|++. .||+|-|.|-|-.+-+-.+++ +|+++||.. | |..--++-.++++
T Consensus 287 Atk~ALkl-----~dyvVTEAGFGaDlGaEKF~dIKcR~~gl~P~avVlVATvRALK~hGG~~~~~l~~en~~al~~G~~ 361 (557)
T 3pzx_A 287 ATKTALKL-----ADYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVPKSDLATENLEALREGFA 361 (557)
T ss_dssp HHHHHHHH-----CSEEEEEBSSCTTTHHHHHHHTHHHHHTCCCCEEEEEECHHHHHHHTTCCGGGTTSCCHHHHHHHHH
T ss_pred HHHHHHhc-----cCeEEEecccCcCcchhhhcCCcccccCCCCCEEEEEeehHHHHhcCCCChhhcCccCHHHHHHHHH
Confidence 34555555 399999999884432222111 688766542 2 2222222223333
Q ss_pred HHHHHHhcccCCCCcEEe--e---CCchHHHHHHHHHHHhcCccE
Q 007911 217 DIAFHKAGIFKPQIPAFT--V---PQLSEAMSVLQDRALELMVPL 256 (585)
Q Consensus 217 ~IA~~KagI~k~g~~aV~--~---~qd~~~~~vl~~~a~~~~~~l 256 (585)
++.+|=..+-+-|.|+|+ | .|.++-.+.+++.|++.|++.
T Consensus 362 NL~kHien~~~fGvpvVVaiN~F~tDT~aEi~~v~~~~~~~G~~~ 406 (557)
T 3pzx_A 362 NLEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAEV 406 (557)
T ss_dssp HHHHHHHHHHTTTCCEEEEEECCTTCCHHHHHHHHHHCCSSEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 333444444456888775 3 244445567788887777654
No 128
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=26.39 E-value=52 Score=36.10 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=28.8
Q ss_pred ccEEEEec----CCCCchHHHHHHHHHHHCCCCeEEE
Q 007911 76 LKVIHVSG----TKGKGSTCTFCEAILRECGFRTGLF 108 (585)
Q Consensus 76 l~vIhVTG----TnGKgST~aml~sIL~~~G~kvGl~ 108 (585)
.+.|-||| +=|||-|++-|..+|++.|++|-..
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~ 39 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAV 39 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEE
Confidence 47888998 5699999999999999999998544
No 129
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=26.07 E-value=33 Score=30.03 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=18.0
Q ss_pred cEEEEecC--CCCchHHHHHHHHH
Q 007911 77 KVIHVSGT--KGKGSTCTFCEAIL 98 (585)
Q Consensus 77 ~vIhVTGT--nGKgST~aml~sIL 98 (585)
.+|.|+|. .||||++..|+..|
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 57889997 57999999888766
No 130
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=25.10 E-value=26 Score=31.01 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=17.8
Q ss_pred cEEEEecCC--CCchHHHHHHHHH
Q 007911 77 KVIHVSGTK--GKGSTCTFCEAIL 98 (585)
Q Consensus 77 ~vIhVTGTn--GKgST~aml~sIL 98 (585)
.+|.|+|.+ ||||++.+|+..|
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 478999986 6889888888766
No 131
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=24.96 E-value=35 Score=31.36 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=19.5
Q ss_pred ccEEEEecCC--CCchHHHHHHHHH
Q 007911 76 LKVIHVSGTK--GKGSTCTFCEAIL 98 (585)
Q Consensus 76 l~vIhVTGTn--GKgST~aml~sIL 98 (585)
-.+|.|+|-+ ||||++.+|...+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999987 5999999998877
No 132
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=24.66 E-value=48 Score=30.06 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=23.0
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCCe
Q 007911 77 KVIHVSGT--KGKGSTCTFCEAILRECGFRT 105 (585)
Q Consensus 77 ~vIhVTGT--nGKgST~aml~sIL~~~G~kv 105 (585)
.+|.|+|. .||||.+..|+.-|...| ++
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~ 34 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR-DV 34 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS-CE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC-CE
Confidence 47888885 789999999999887666 55
No 133
>3dfr_A Dihydrofolate reductase; oxido-reductase; HET: NDP MTX; 1.70A {Lactobacillus casei} SCOP: c.71.1.1 PDB: 1ao8_A* 1bzf_A* 1dis_A* 1diu_A* 1lud_A* 2hm9_A* 2hqp_A* 2l28_A 2lf1_A*
Probab=24.53 E-value=48 Score=30.22 Aligned_cols=40 Identities=5% Similarity=0.228 Sum_probs=31.4
Q ss_pred cceecCCHHHHHHHHHhhhhcCCCCcceEEEeCchhchHhHHhhhc
Q 007911 539 CSAVIPSLPLTIKWLRDSVQENPSIRVQVLVTGSLHLVGDVLKLLK 584 (585)
Q Consensus 539 ~~~v~~si~~ai~~~~~~~~~~~~~~~~VlVTGSlhLVG~~l~~l~ 584 (585)
.+.++.++++|++.+++.. .-+|+|.|+--|+..+|.+++
T Consensus 72 ~~~~~~~~~~~l~~lk~~~------~~~i~viGG~~l~~~~l~l~D 111 (162)
T 3dfr_A 72 GAVVVHDVAAVFAYAKQHL------DQELVIAGGAQIFTAFKDDVD 111 (162)
T ss_dssp TSEEESSHHHHHHHHHHCC------SSCEEECCCHHHHHHTGGGCC
T ss_pred CEEEECCHHHHHHHHhcCC------CCCEEEECCHHHHHHHHhhCC
Confidence 4667799999999887531 236999999999998887665
No 134
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=24.28 E-value=78 Score=32.13 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhCCCCcccCccEEEEec--CCCCchHHHHHHHHHHHCCCCeEEEcCCc
Q 007911 57 LQRMSMYLKILGLEDRIAELKVIHVSG--TKGKGSTCTFCEAILRECGFRTGLFTSPH 112 (585)
Q Consensus 57 l~~~~~~L~~Lg~~~p~~~l~vIhVTG--TnGKgST~aml~sIL~~~G~kvGl~tSPh 112 (585)
|-.+..++..-+. --+|.+-| +.||||+...|..-|...|++|-.+.-|.
T Consensus 73 L~~lQ~~~~~~~~------~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt 124 (304)
T 3czq_A 73 LVKVQFWMQATGK------RVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPT 124 (304)
T ss_dssp HHHHHHHHHHHCC------CEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCC
T ss_pred HHHHHHHHHHcCC------CeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcC
Confidence 4455666655552 24677777 78999999999999999999998887775
No 135
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=24.13 E-value=64 Score=27.46 Aligned_cols=37 Identities=8% Similarity=0.306 Sum_probs=27.8
Q ss_pred cccccccCC---CHHHHHHHHhcccCCCCcEEeeCCchHH
Q 007911 205 MDHMELLGN---TLNDIAFHKAGIFKPQIPAFTVPQLSEA 241 (585)
Q Consensus 205 ~DHld~lG~---Tle~IA~~KagI~k~g~~aV~~~qd~~~ 241 (585)
-||+.++++ |+|+|..+|..-++.+..-+.-.+.|+.
T Consensus 51 aDnLgwF~d~~~~IEdil~~kGe~V~~~~~d~~~ed~pe~ 90 (100)
T 2e2z_A 51 ADHLKIFHDHHVTVEQLMKANGEQVSQDVGDLEFEDIPDS 90 (100)
T ss_dssp CCSSCSGGGSCCCHHHHHHHHCCCCSSSSCEEEESSCCHH
T ss_pred ehhhhhhccCCCCHHHHHHHcCCEeeecCCCccHhhChHH
Confidence 477777753 8999999999999876655655666654
No 136
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=23.95 E-value=38 Score=31.08 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=18.7
Q ss_pred EEEEecCCC--CchHHHHHHHHHH
Q 007911 78 VIHVSGTKG--KGSTCTFCEAILR 99 (585)
Q Consensus 78 vIhVTGTnG--KgST~aml~sIL~ 99 (585)
.++++|-|| |||+..+|..++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999987 8898899988884
No 137
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=23.70 E-value=70 Score=30.85 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=24.9
Q ss_pred ccEEEEecC--CCCchHHHHHHHHHHHCCCCeE
Q 007911 76 LKVIHVSGT--KGKGSTCTFCEAILRECGFRTG 106 (585)
Q Consensus 76 l~vIhVTGT--nGKgST~aml~sIL~~~G~kvG 106 (585)
..+|.|+|. .||||.+..|+.-|...|+.+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i 36 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVI 36 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 356777774 5899999999999998888653
No 138
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=23.61 E-value=59 Score=31.76 Aligned_cols=35 Identities=23% Similarity=0.192 Sum_probs=26.2
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHC-CCCeEEEc
Q 007911 75 ELKVIHVSGTK--GKGSTCTFCEAILREC-GFRTGLFT 109 (585)
Q Consensus 75 ~l~vIhVTGTn--GKgST~aml~sIL~~~-G~kvGl~t 109 (585)
+-.++.|+|-| ||||.+..+...+... |.++.+++
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 33589999987 7888888888888765 76675543
No 139
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=22.67 E-value=38 Score=31.50 Aligned_cols=24 Identities=25% Similarity=0.160 Sum_probs=19.1
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHH
Q 007911 76 LKVIHVSGTK--GKGSTCTFCEAILR 99 (585)
Q Consensus 76 l~vIhVTGTn--GKgST~aml~sIL~ 99 (585)
-.+|.|.|-+ ||||++.+|...+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3689999987 59999988877653
No 140
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=22.67 E-value=61 Score=28.78 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=23.0
Q ss_pred cEEEEecC--CCCchHHHHHHHHHHHCCCC
Q 007911 77 KVIHVSGT--KGKGSTCTFCEAILRECGFR 104 (585)
Q Consensus 77 ~vIhVTGT--nGKgST~aml~sIL~~~G~k 104 (585)
.+|.|+|. .||||.+..|+.-|...|++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~ 33 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 33 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcc
Confidence 47888886 68999999999999877743
No 141
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=22.18 E-value=66 Score=31.28 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=20.0
Q ss_pred cEEEEecCCCCchHHHHHHHHHHHCCC
Q 007911 77 KVIHVSGTKGKGSTCTFCEAILRECGF 103 (585)
Q Consensus 77 ~vIhVTGTnGKgST~aml~sIL~~~G~ 103 (585)
-+.|=+|| |||+++..++..|...++
T Consensus 71 ll~G~~Gt-GKT~la~~la~~l~~~~~ 96 (309)
T 3syl_A 71 SFTGNPGT-GKTTVALKMAGLLHRLGY 96 (309)
T ss_dssp EEEECTTS-SHHHHHHHHHHHHHHTTS
T ss_pred EEECCCCC-CHHHHHHHHHHHHHhcCC
Confidence 34455555 999999999999988765
No 142
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=21.92 E-value=62 Score=29.14 Aligned_cols=40 Identities=10% Similarity=-0.020 Sum_probs=30.9
Q ss_pred cceecCCHHHHHHHHHhhhhcCCCCcceEEEeCchhchHhHHhhhc
Q 007911 539 CSAVIPSLPLTIKWLRDSVQENPSIRVQVLVTGSLHLVGDVLKLLK 584 (585)
Q Consensus 539 ~~~v~~si~~ai~~~~~~~~~~~~~~~~VlVTGSlhLVG~~l~~l~ 584 (585)
.+.++.++++|++.+++. ..-+|+|-|+--|+..+|.+++
T Consensus 75 ~~~~~~~~~~~l~~l~~~------~~~~i~viGG~~l~~~~l~lvD 114 (162)
T 1vdr_A 75 TAHRAASVEEAVDIAASL------DAETAYVIGGAAIYALFQPHLD 114 (162)
T ss_dssp SCCEESSHHHHHHHHHHT------TCSCEEEEECHHHHHHHGGGCS
T ss_pred CEEEECCHHHHHHHHHhC------CCCcEEEECCHHHHHHHHHhCC
Confidence 356778999999988752 1226999999999998888654
No 143
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=21.50 E-value=62 Score=35.63 Aligned_cols=34 Identities=29% Similarity=0.476 Sum_probs=30.2
Q ss_pred cEEEEe-cC---CCCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 77 KVIHVS-GT---KGKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 77 ~vIhVT-GT---nGKgST~aml~sIL~~~G~kvGl~tS 110 (585)
+.|-|| || -|||.+++-|..+|+..|++|..|-.
T Consensus 13 ~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~ 50 (550)
T 1vco_A 13 KYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKI 50 (550)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeec
Confidence 678888 65 69999999999999999999988876
No 144
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=21.34 E-value=49 Score=31.28 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=19.5
Q ss_pred cCccEEEEecCC--CCchHHHHHHHHH
Q 007911 74 AELKVIHVSGTK--GKGSTCTFCEAIL 98 (585)
Q Consensus 74 ~~l~vIhVTGTn--GKgST~aml~sIL 98 (585)
.+..+|+|+|.+ ||||++.+|+..|
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 445689999986 6888888887755
No 145
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=21.26 E-value=31 Score=31.41 Aligned_cols=22 Identities=27% Similarity=0.214 Sum_probs=18.2
Q ss_pred cEEEEecCC--CCchHHHHHHHHH
Q 007911 77 KVIHVSGTK--GKGSTCTFCEAIL 98 (585)
Q Consensus 77 ~vIhVTGTn--GKgST~aml~sIL 98 (585)
.+|+|+|-+ ||||++.+|...+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999987 6889998887766
No 146
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=21.09 E-value=46 Score=31.03 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=19.6
Q ss_pred CccEEEEecC--CCCchHHHHHHHHH
Q 007911 75 ELKVIHVSGT--KGKGSTCTFCEAIL 98 (585)
Q Consensus 75 ~l~vIhVTGT--nGKgST~aml~sIL 98 (585)
.-.+|+|||- .||||++.+++..|
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468999996 68999999988864
No 147
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=20.47 E-value=67 Score=35.31 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=29.6
Q ss_pred cEEEEe-cC---CCCchHHHHHHHHHHHCCCCeEEEcC
Q 007911 77 KVIHVS-GT---KGKGSTCTFCEAILRECGFRTGLFTS 110 (585)
Q Consensus 77 ~vIhVT-GT---nGKgST~aml~sIL~~~G~kvGl~tS 110 (585)
+.|-|| || -|||.+++-|..+|+..|++|..|-.
T Consensus 4 ~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~ 41 (545)
T 1s1m_A 4 NYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKL 41 (545)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeec
Confidence 567777 54 69999999999999999999998876
No 148
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=20.40 E-value=95 Score=28.31 Aligned_cols=29 Identities=28% Similarity=0.251 Sum_probs=24.3
Q ss_pred ccEEEEecCC--CCchHHHHHHHHHHHCCCC
Q 007911 76 LKVIHVSGTK--GKGSTCTFCEAILRECGFR 104 (585)
Q Consensus 76 l~vIhVTGTn--GKgST~aml~sIL~~~G~k 104 (585)
-.+|.|+|-+ ||||++.+|+..|...|..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~ 55 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKL 55 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCce
Confidence 3689999974 7999999999999877764
No 149
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=20.24 E-value=90 Score=29.96 Aligned_cols=37 Identities=24% Similarity=0.273 Sum_probs=28.4
Q ss_pred CccEEEEecCC--CCchHHHHHHHHHHHC----CCCeEEEcCC
Q 007911 75 ELKVIHVSGTK--GKGSTCTFCEAILREC----GFRTGLFTSP 111 (585)
Q Consensus 75 ~l~vIhVTGTn--GKgST~aml~sIL~~~----G~kvGl~tSP 111 (585)
+-.+|.|.|-. ||||.+..|..-|... |+++-+..-|
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep 66 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREP 66 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCC
Confidence 34689999965 5999999999999988 9887543334
Done!