BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007912
(585 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 964 bits (2493), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/585 (80%), Positives = 530/585 (90%), Gaps = 1/585 (0%)
Query: 2 LKKMSYSSLPEDVLEHVFSFVQSDKDRNVISLVCKSWYEIERWCRRRIFVGNCYAVSPRM 61
++K S PE+VLEHVFSF+Q DKDRN +SLVCKSWYEIERWCRR++F+GNCYAVSP
Sbjct: 1 MQKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPAT 60
Query: 62 AIRRFPEVRSVELKGKPHFADFNLVPEGWGGYVYPWIRAMAGGYPWLEELKLKRMVVTDE 121
IRRFP+VRSVELKGKPHFADFNLVP+GWGGYVYPWI AM+ Y WLEE++LKRMVVTD+
Sbjct: 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD 120
Query: 122 SLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFP 181
LELIAKSFKNFKVLVLSSCEGFST GLAAIAA C+NLKELDL ESDV+D SG+WLS FP
Sbjct: 121 CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180
Query: 182 DTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVEL 241
DT TSLVSLNI+CL SEVSFSALERLV RCPNL++L+LNRAVPLEKLA LL++APQL EL
Sbjct: 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL 240
Query: 242 GTGTYSADLRPDIFSNLAGAFSGCKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYAT 301
GTG Y+A++RPD++S L+ A SGCKEL+ LSGFWD VPAYLPAVYSVCS LTTLNLSYAT
Sbjct: 241 GTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT 300
Query: 302 IQSPDLIKLVSQCPKLQCLWVLDYIEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSLT 361
+QS DL+KL+ QCPKLQ LWVLDYIED+GLE LA+TCKDLRELRVFPSEPF EPNV+LT
Sbjct: 301 VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALT 360
Query: 362 EQGLVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPL 421
EQGLV VS GCPKLESVLYFCR+M+N AL+TIA+NRP+M RFRLCII+P+ PDYLTLEPL
Sbjct: 361 EQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL 420
Query: 422 DVGFGAIVQHCKDLRRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGC 481
D+GFGAIV+HCKDLRRLSLSGLLTD+VFEYIGTYAKK+EMLSVAFAG+SDLG+HHVLSGC
Sbjct: 421 DIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC 480
Query: 482 DSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFEACKLLGQKMPRLNVEVIDE 541
DSLRKLEI DCPFGDKALLANA+KLETMRSLWMSSCSVSF ACKLLGQKMP+LNVEVIDE
Sbjct: 481 DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE 540
Query: 542 SGPPDSRPE-LPVKKLYIYRTVTGRRIDMPGFVWNVGEDSALRLS 585
G PDSRPE PV++++IYRTV G R DMPGFVWN+ +DS +R S
Sbjct: 541 RGAPDSRPESCPVERVFIYRTVAGPRFDMPGFVWNMDQDSTMRFS 585
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 302 bits (774), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 184/587 (31%), Positives = 308/587 (52%), Gaps = 28/587 (4%)
Query: 4 KMSYSSLPEDVLEHVFSFVQSDKDRNVISLVCKSWYEIERWCRRRIFVGNCYAVSPRMAI 63
K+S + +DV+E V +++ KDR+ SLVC+ W++I+ R + + CY +P
Sbjct: 10 KLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLS 69
Query: 64 RRFPEVRSVELKGKPHFADFNLVPEGWGGYVYPWIRAMAGGYPWLEELKLKRMVVTDESL 123
RRFP +RS++LKGKP A FNL+PE WGGYV PW+ ++ L+ + +RM+V+D L
Sbjct: 70 RRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDL 129
Query: 124 ELIAKS-FKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPD 182
+ +AK+ + + L L C GF+T GL +I C+ +K L + ES + G WL +
Sbjct: 130 DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189
Query: 183 TCTSLVSLNIACLG-SEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVEL 241
TSL LN +++S LE + C +L ++++ LE L + A L E
Sbjct: 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEF 248
Query: 242 GTGTYSADL-RPDIFSNLAGAFSGCKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYA 300
G+ + D+ P+ + NL C+ S G P +P ++ + + L+L YA
Sbjct: 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-----PNEMPILFPFAAQIRKLDLLYA 303
Query: 301 TIQSPDLIKLVSQCPKLQCLWVLDYIEDSGLEALAATCKDLRELRVFPSEPFGDEPNVS- 359
+++ D L+ +CP L+ L + I D GLE LA CK L+ LR+ E DE +
Sbjct: 304 LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI---ERGADEQGMED 360
Query: 360 ----LTEQGLVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDY 415
++++GL+ +++GC +LE + + ++N++L +I ++ FRL ++D + +
Sbjct: 361 EEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDRE--ER 418
Query: 416 LTLEPLDVGFGAIVQHCKDLRRLSL---SGLLTDRVFEYIGTYAKKLEMLSVAFAGESDL 472
+T PLD G +++ CK LRR + G LTD YIG Y+ + + + + GESD
Sbjct: 419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE 478
Query: 473 GLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFEACKLLGQKMP 532
GL GC +L+KLE+ C F ++A+ A KL ++R LW+ S L+ P
Sbjct: 479 GLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARP 538
Query: 533 RLNVEVIDESGPPDSRPELPVKKL------YIYRTVTGRRIDMPGFV 573
N+E+I P+ + ++++ Y ++ G+R D P V
Sbjct: 539 YWNIELIPSRRVPEVNQQGEIREMEHPAHILAYYSLAGQRTDCPTTV 585
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 102/235 (43%), Gaps = 16/235 (6%)
Query: 5 MSYSSLPEDVLEHVFSFVQSDKDRNVISLVCKSWYEIER----WCRRRIFVGNCYA-VSP 59
+S+ SLP+++L +FS + + V S VCK WY + W + N + V+
Sbjct: 7 VSWDSLPDELLLGIFSCLCLPELLKV-SGVCKRWYRLASDESLWQTLDLTGKNLHPDVTG 65
Query: 60 RM---AIRRFPEVRS-VELKGKPHFADFNLVPEGWGGYVY--PWIRAMAGGYPWLEELKL 113
R+ + F RS ++ HF+ F + V + + L+ L L
Sbjct: 66 RLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125
Query: 114 KRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDL-WESDVEDP 172
+ + ++D + +AK+ N L LS C GFS L + + C L EL+L W D +
Sbjct: 126 EGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK 184
Query: 173 SGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEK 227
++ LN++ + S L LV RCPNL L L+ +V L+
Sbjct: 185 HVQ--VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN 237
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 427 AIVQHCKDLRRLSLSGL-LTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLR 485
I+ C L+ LSL GL L+D + + + + + +G S+ L +LS C L
Sbjct: 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171
Query: 486 KLEIMDC-PFGDKALLANAAKL-ETMRSLWMS 515
+L + C F +K + A + ET+ L +S
Sbjct: 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 84/195 (43%), Gaps = 13/195 (6%)
Query: 108 LEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDL-WE 166
L+ L L+ + ++D + +AK+ N L LS C GFS L + + C L EL+L W
Sbjct: 82 LQNLSLEGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 140
Query: 167 SDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLE 226
D + ++ LN++ + S L LV RCPNL L L+ +V L+
Sbjct: 141 FDFTEKHVQ--VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 198
Query: 227 KLAHLLRQAPQLVELGTGTYSA--DLRPDIFSNLAGAFSGCKELKSL----SGFWDVVPA 280
++ QL L + S D+ P+ L G K L+ G ++
Sbjct: 199 N--DCFQEFFQLNYLQHLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGIVPDGTLQLLKE 255
Query: 281 YLPAVYSVCSGLTTL 295
LP + CS TT+
Sbjct: 256 ALPHLQINCSHFTTI 270
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
Query: 411 QTPDYLTLEPLDVG--------FGAIVQHCKDLRRLSLSGL-LTDRVFEYIGTYAKKLEM 461
QT D ++ +D+ I+ C L+ LSL GL L+D + + + + +
Sbjct: 50 QTLDEFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 109
Query: 462 LSVAFAGESDLGLHHVLSGCDSLRKLEIMDC-PFGDKALLANAAKL-ETMRSLWMS 515
+G S+ L +LS C L +L + C F +K + A + ET+ L +S
Sbjct: 110 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 165
>pdb|4AKX|B Chain B, Structure Of The Heterodimeric Complex Exou-Spcu From The
Type Iii Secretion System (T3ss) Of Pseudomonas
Aeruginosa
Length = 660
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 196 GSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVELGTGTYSADLRPDIF 255
GS V+F L+RL P ++TL + E PQLV +++ DL
Sbjct: 234 GSGVTFGDLDRLSAYIPQIKTLNITGTAXFEG-------RPQLVVF-NASHTPDLEVAQA 285
Query: 256 SNLAGAFSGCKELKSLS 272
++++G+F G + SLS
Sbjct: 286 AHISGSFPGVFQKVSLS 302
>pdb|3LR1|A Chain A, The Crystal Structure Of The Tungstate Abc Transporter
From Geobacter Sulfurreducens
Length = 236
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 15/56 (26%)
Query: 121 ESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNW 176
E+L+L+A F +S + TH KELDLW+S DP GNW
Sbjct: 106 EALKLLATKGATF----ISRGDKSGTH-----------TKELDLWKSAGVDPKGNW 146
>pdb|3TU3|B Chain B, 1.92 Angstrom Resolution Crystal Structure Of The
Full-Length Spcu In Complex With Full-Length Exou From
The Type Iii Secretion System Of Pseudomonas Aeruginosa
Length = 711
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 196 GSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVELGTGTYSADLRPDIF 255
GS V+F L+RL P ++TL + E PQLV +++ DL
Sbjct: 285 GSGVTFGDLDRLSAYIPQIKTLNITGTAMFEG-------RPQLVVF-NASHTPDLEVAQA 336
Query: 256 SNLAGAFSGCKELKSLS 272
++++G+F G + SLS
Sbjct: 337 AHISGSFPGVFQKVSLS 353
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 16/111 (14%)
Query: 212 PNLRTLRLNRAVPLEKLAHLLRQAPQLVELGTGTYSADLRPDIFSNL-AGAFSG--CKEL 268
P LR R N PL HL + L +G T S P + S L A ++G C L
Sbjct: 71 PELRDFRGN--TPL----HLACEQGCLASVGVLTQSCT-TPHLHSILKATNYNGHTCLHL 123
Query: 269 KSLSGFWDVVPAYLPAVYSV-----CSGLTTLNLSYATIQSPDLIKLVSQC 314
S+ G+ +V + V C+G T L+L+ +Q+PDL+ L+ +C
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA-VDLQNPDLVSLLLKC 173
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 16/111 (14%)
Query: 212 PNLRTLRLNRAVPLEKLAHLLRQAPQLVELGTGTYSADLRPDIFSNL-AGAFSG--CKEL 268
P LR R N PL HL + L +G T S P + S L A ++G C L
Sbjct: 68 PELRDFRGN--TPL----HLACEQGCLASVGVLTQSCT-TPHLHSILKATNYNGHTCLHL 120
Query: 269 KSLSGFWDVVPAYLPAVYSV-----CSGLTTLNLSYATIQSPDLIKLVSQC 314
S+ G+ +V + V C+G T L+L+ +Q+PDL+ L+ +C
Sbjct: 121 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLA-VDLQNPDLVSLLLKC 170
>pdb|1GEW|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase
Complexed With Pyridoxal 5'-Phosphate
pdb|1GEX|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase
Complexed With Histidinol-Phosphate
pdb|1GEY|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase
Complexed With N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|1IJI|A Chain A, Crystal Structure Of L-histidinol Phosphate
Aminotransferase With Plp
Length = 356
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 8/126 (6%)
Query: 53 NCYAVSPRMAIRRFPEVRSVELKGK--PHFADFNLVPEGWGGYVYPWIRAMAGGYPWLEE 110
N ++P + RR V L P +F L + Y +A+ Y
Sbjct: 13 NVRNLTPYQSARRLGGNGDVWLNANEYPTAVEFQLTQQTLNRYPECQPKAVIENYAQYAG 72
Query: 111 LKLKRMVVT---DESLELIAKSF---KNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDL 164
+K ++++V+ DE +EL+ ++F +L G + I +C+ + LD
Sbjct: 73 VKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLDN 132
Query: 165 WESDVE 170
W+ D++
Sbjct: 133 WQLDLQ 138
>pdb|1FG3|A Chain A, Crystal Structure Of L-Histidinol Phosphate
Aminotransferase Complexed With L-Histidinol
pdb|1FG7|A Chain A, Crystal Structure Of L-Histidinol Phosphate
Aminotransferase With Pyridoxal-5'-Phosphate
Length = 356
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 8/126 (6%)
Query: 53 NCYAVSPRMAIRRFPEVRSVELKGK--PHFADFNLVPEGWGGYVYPWIRAMAGGYPWLEE 110
N ++P + RR V L P +F L + Y +A+ Y
Sbjct: 13 NVRNLTPYQSARRLGGNGDVWLNANEYPTAVEFQLTQQTLNRYPECQPKAVIENYAQYAG 72
Query: 111 LKLKRMVVT---DESLELIAKSF-KNFKVLVLSSCEGFSTHGLAA--IAADCKNLKELDL 164
+K ++++V+ DE +EL+ ++F + K +L + + ++A I +C+ + LD
Sbjct: 73 VKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGXYSVSAETIGVECRTVPTLDN 132
Query: 165 WESDVE 170
W+ D++
Sbjct: 133 WQLDLQ 138
>pdb|3Q3E|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase
pdb|3Q3E|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase
pdb|3Q3H|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In Complex With Udp-Glc
pdb|3Q3H|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In Complex With Udp-Glc
pdb|3Q3I|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In The Presence Of Peptide
N1131
pdb|3Q3I|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In The Presence Of Peptide
N1131
Length = 631
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 195 LGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVELGTGTYSADLRP 252
+GSE FS ++R P + A+ EK+ +LLR+ P++V +G + + L P
Sbjct: 401 VGSEECFS---ETLLRLPKDALPYVPSALAPEKVDYLLRENPEVVNIGIASTTMKLNP 455
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,730,870
Number of Sequences: 62578
Number of extensions: 738552
Number of successful extensions: 1712
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1682
Number of HSP's gapped (non-prelim): 19
length of query: 585
length of database: 14,973,337
effective HSP length: 104
effective length of query: 481
effective length of database: 8,465,225
effective search space: 4071773225
effective search space used: 4071773225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)