Query 007912
Match_columns 585
No_of_seqs 356 out of 3631
Neff 11.0
Searched_HMMs 46136
Date Thu Mar 28 17:00:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 2.3E-33 4.9E-38 255.0 15.1 371 9-539 74-459 (483)
2 KOG2120 SCF ubiquitin ligase, 99.9 2.4E-24 5.2E-29 187.6 9.6 199 7-223 98-324 (419)
3 PLN00113 leucine-rich repeat r 99.9 1.3E-21 2.9E-26 217.9 13.7 160 60-246 111-270 (968)
4 PLN00113 leucine-rich repeat r 99.9 2.6E-21 5.5E-26 215.7 15.5 254 60-347 86-340 (968)
5 KOG4341 F-box protein containi 99.9 5.7E-22 1.2E-26 181.2 7.3 248 277-542 177-437 (483)
6 KOG4194 Membrane glycoprotein 99.7 3.5E-18 7.6E-23 162.8 2.0 342 106-519 78-428 (873)
7 cd00116 LRR_RI Leucine-rich re 99.7 9.6E-16 2.1E-20 148.9 18.1 75 456-530 220-301 (319)
8 cd00116 LRR_RI Leucine-rich re 99.6 1E-14 2.2E-19 141.7 19.7 213 286-518 77-318 (319)
9 KOG4194 Membrane glycoprotein 99.6 3.2E-17 6.9E-22 156.4 1.4 340 101-489 97-446 (873)
10 KOG1947 Leucine rich repeat pr 99.6 1.2E-14 2.5E-19 150.2 12.1 283 183-529 159-450 (482)
11 KOG1909 Ran GTPase-activating 99.5 7.5E-14 1.6E-18 125.7 12.9 108 98-207 22-140 (382)
12 KOG1909 Ran GTPase-activating 99.5 6.2E-14 1.3E-18 126.2 11.6 219 288-535 90-328 (382)
13 KOG2120 SCF ubiquitin ligase, 99.5 8.4E-14 1.8E-18 122.4 7.1 204 290-537 185-392 (419)
14 KOG1947 Leucine rich repeat pr 99.4 3.3E-13 7.1E-18 139.4 9.3 183 284-505 263-451 (482)
15 PLN03210 Resistant to P. syrin 99.4 8.2E-13 1.8E-17 147.9 11.9 311 132-518 590-904 (1153)
16 KOG0444 Cytoskeletal regulator 99.3 3.1E-14 6.8E-19 137.3 -4.6 148 372-542 221-372 (1255)
17 PLN03210 Resistant to P. syrin 99.2 2.2E-10 4.9E-15 128.6 13.9 124 107-246 590-714 (1153)
18 KOG0444 Cytoskeletal regulator 99.1 2.1E-12 4.6E-17 125.0 -3.5 208 289-524 125-335 (1255)
19 KOG3207 Beta-tubulin folding c 99.1 1E-11 2.3E-16 115.3 0.9 137 372-519 196-338 (505)
20 KOG0618 Serine/threonine phosp 99.1 6E-12 1.3E-16 127.5 -2.7 99 424-527 374-499 (1081)
21 KOG0618 Serine/threonine phosp 99.0 1.9E-10 4.1E-15 116.9 5.1 348 108-519 158-512 (1081)
22 KOG3207 Beta-tubulin folding c 99.0 1E-10 2.2E-15 108.9 1.0 190 287-521 118-315 (505)
23 PF12937 F-box-like: F-box-lik 98.9 1.1E-09 2.3E-14 71.3 3.2 35 7-42 1-35 (47)
24 PRK15387 E3 ubiquitin-protein 98.9 1.8E-09 3.9E-14 112.7 5.0 64 457-527 402-465 (788)
25 PRK15387 E3 ubiquitin-protein 98.8 1.2E-08 2.6E-13 106.6 8.0 163 289-502 301-465 (788)
26 KOG0472 Leucine-rich repeat pr 98.8 1.7E-10 3.6E-15 106.2 -5.1 111 394-520 431-541 (565)
27 COG5238 RNA1 Ran GTPase-activa 98.6 7.7E-07 1.7E-11 78.2 13.4 100 95-195 20-130 (388)
28 COG5238 RNA1 Ran GTPase-activa 98.5 1.1E-06 2.5E-11 77.2 10.5 217 288-518 28-283 (388)
29 PF00646 F-box: F-box domain; 98.5 3.9E-08 8.4E-13 64.5 0.5 37 6-43 2-38 (48)
30 KOG3665 ZYG-1-like serine/thre 98.4 7.2E-07 1.6E-11 93.1 8.5 135 388-536 138-279 (699)
31 KOG3665 ZYG-1-like serine/thre 98.4 8.7E-07 1.9E-11 92.5 8.6 159 337-517 120-285 (699)
32 smart00256 FBOX A Receptor for 98.4 6.1E-07 1.3E-11 56.5 4.3 32 10-42 1-32 (41)
33 KOG2982 Uncharacterized conser 98.3 6.7E-07 1.4E-11 79.7 3.4 85 428-513 194-285 (418)
34 PF14580 LRR_9: Leucine-rich r 98.2 2.5E-07 5.3E-12 78.7 0.4 103 431-537 40-145 (175)
35 PF14580 LRR_9: Leucine-rich r 98.2 2.5E-07 5.3E-12 78.8 0.3 105 396-515 40-148 (175)
36 KOG2982 Uncharacterized conser 98.2 4.5E-06 9.6E-11 74.6 6.4 109 108-222 47-156 (418)
37 PRK15370 E3 ubiquitin-protein 98.1 1.5E-05 3.2E-10 84.4 11.3 88 433-528 346-436 (754)
38 KOG4237 Extracellular matrix p 98.0 1.6E-06 3.5E-11 80.3 1.7 67 453-521 270-336 (498)
39 KOG4237 Extracellular matrix p 98.0 1.2E-06 2.7E-11 81.1 -0.8 89 427-518 268-357 (498)
40 KOG3864 Uncharacterized conser 97.9 1.2E-05 2.6E-10 67.9 4.4 104 435-540 103-212 (221)
41 KOG1259 Nischarin, modulator o 97.9 3.9E-06 8.4E-11 75.0 1.0 127 373-519 284-411 (490)
42 PRK15370 E3 ubiquitin-protein 97.8 0.00012 2.7E-09 77.5 10.5 85 398-500 346-433 (754)
43 PF13855 LRR_8: Leucine rich r 97.7 1.7E-06 3.6E-11 60.1 -2.8 61 457-519 1-61 (61)
44 KOG1259 Nischarin, modulator o 97.7 3.1E-06 6.8E-11 75.5 -2.1 126 396-542 282-409 (490)
45 KOG0472 Leucine-rich repeat pr 97.6 1.4E-06 3E-11 81.0 -6.9 86 429-519 224-309 (565)
46 KOG4658 Apoptotic ATPase [Sign 97.5 5.2E-05 1.1E-09 81.7 3.4 107 129-243 543-649 (889)
47 KOG4308 LRR-containing protein 97.5 6.8E-05 1.5E-09 75.1 3.8 224 289-529 203-454 (478)
48 KOG1859 Leucine-rich repeat pr 97.5 8.6E-06 1.9E-10 81.6 -3.5 104 397-519 186-291 (1096)
49 KOG3864 Uncharacterized conser 97.4 8E-05 1.7E-09 63.0 2.4 81 458-540 102-184 (221)
50 KOG4308 LRR-containing protein 97.4 3.2E-05 7E-10 77.4 -0.1 64 456-520 403-473 (478)
51 PF13855 LRR_8: Leucine rich r 97.0 4.6E-05 9.9E-10 52.8 -2.7 39 455-494 23-61 (61)
52 PF12799 LRR_4: Leucine Rich r 97.0 0.00049 1.1E-08 43.5 1.9 36 458-495 2-37 (44)
53 PF12799 LRR_4: Leucine Rich r 97.0 0.00079 1.7E-08 42.5 2.8 38 482-521 1-38 (44)
54 KOG1859 Leucine-rich repeat pr 96.9 0.00024 5.2E-09 71.7 -0.3 106 372-495 186-292 (1096)
55 KOG0617 Ras suppressor protein 96.8 1.8E-05 3.9E-10 64.7 -6.9 81 105-195 32-112 (264)
56 KOG4658 Apoptotic ATPase [Sign 96.7 0.0015 3.2E-08 70.9 3.9 109 104-223 543-653 (889)
57 PLN03150 hypothetical protein; 96.6 0.0023 5E-08 67.5 4.8 65 429-495 438-503 (623)
58 KOG2123 Uncharacterized conser 96.4 0.001 2.2E-08 59.3 0.5 111 398-526 19-134 (388)
59 KOG0617 Ras suppressor protein 96.4 0.00012 2.6E-09 60.1 -5.0 82 155-246 31-112 (264)
60 PLN03215 ascorbic acid mannose 96.3 0.0039 8.5E-08 59.6 3.9 38 6-43 3-40 (373)
61 PLN03150 hypothetical protein; 96.1 0.0062 1.4E-07 64.3 4.7 93 434-529 419-512 (623)
62 KOG2123 Uncharacterized conser 96.0 0.0027 5.8E-08 56.8 1.2 112 374-503 20-136 (388)
63 smart00367 LRR_CC Leucine-rich 95.6 0.013 2.7E-07 32.1 2.5 9 484-492 4-12 (26)
64 PF13516 LRR_6: Leucine Rich r 95.6 0.008 1.7E-07 32.2 1.5 23 506-528 1-23 (24)
65 KOG2739 Leucine-rich acidic nu 95.5 0.01 2.2E-07 52.9 2.6 60 432-492 64-126 (260)
66 KOG0281 Beta-TrCP (transducin 95.4 0.0091 2E-07 54.7 2.2 40 2-42 70-113 (499)
67 KOG2739 Leucine-rich acidic nu 95.4 0.0071 1.5E-07 53.8 1.4 62 457-518 65-127 (260)
68 smart00367 LRR_CC Leucine-rich 95.3 0.025 5.3E-07 30.9 2.8 24 130-153 1-24 (26)
69 KOG2997 F-box protein FBX9 [Ge 95.1 0.017 3.6E-07 52.7 2.9 36 7-42 107-146 (366)
70 PF13516 LRR_6: Leucine Rich r 95.1 0.014 3E-07 31.2 1.5 21 457-477 2-22 (24)
71 KOG1644 U2-associated snRNP A' 95.0 0.016 3.6E-07 49.4 2.5 88 429-518 60-151 (233)
72 KOG1644 U2-associated snRNP A' 94.5 0.06 1.3E-06 46.1 4.4 101 434-539 43-147 (233)
73 smart00368 LRR_RI Leucine rich 94.1 0.064 1.4E-06 29.9 2.7 23 508-530 3-25 (28)
74 PF13013 F-box-like_2: F-box-l 94.0 0.067 1.5E-06 41.2 3.6 35 6-41 21-57 (109)
75 KOG4579 Leucine-rich repeat (L 93.8 0.016 3.4E-07 46.2 -0.2 97 433-533 53-149 (177)
76 smart00368 LRR_RI Leucine rich 93.6 0.076 1.7E-06 29.6 2.4 21 458-478 3-23 (28)
77 KOG4579 Leucine-rich repeat (L 92.4 0.066 1.4E-06 42.8 1.4 63 456-521 52-114 (177)
78 COG4886 Leucine-rich repeat (L 91.4 0.17 3.7E-06 50.6 3.4 33 312-347 252-285 (394)
79 KOG0531 Protein phosphatase 1, 91.4 0.061 1.3E-06 54.1 0.2 105 396-519 93-198 (414)
80 PRK15386 type III secretion pr 91.0 0.7 1.5E-05 45.3 6.9 12 290-301 156-167 (426)
81 COG4886 Leucine-rich repeat (L 90.7 0.42 9.2E-06 47.8 5.4 80 157-246 116-196 (394)
82 KOG3763 mRNA export factor TAP 87.1 0.99 2.1E-05 45.2 4.9 84 451-535 212-304 (585)
83 PRK15386 type III secretion pr 86.0 1.9 4.1E-05 42.4 6.1 12 66-77 51-62 (426)
84 KOG0531 Protein phosphatase 1, 85.7 0.22 4.8E-06 50.0 -0.2 126 372-519 94-220 (414)
85 PF13504 LRR_7: Leucine rich r 85.5 0.54 1.2E-05 22.6 1.1 12 508-519 2-13 (17)
86 KOG3763 mRNA export factor TAP 84.8 1.6 3.5E-05 43.8 5.0 44 449-494 236-282 (585)
87 KOG0274 Cdc4 and related F-box 84.7 0.46 1E-05 48.9 1.5 39 3-42 104-142 (537)
88 PF07723 LRR_2: Leucine Rich R 73.1 2.6 5.6E-05 22.9 1.4 24 459-482 2-26 (26)
89 PF00560 LRR_1: Leucine Rich R 72.0 1.7 3.8E-05 22.4 0.6 13 508-520 1-13 (22)
90 KOG3926 F-box proteins [Amino 69.2 7.1 0.00015 35.2 4.0 39 4-42 199-237 (332)
91 PF08004 DUF1699: Protein of u 59.4 18 0.00038 28.5 4.0 70 482-575 17-89 (131)
92 smart00370 LRR Leucine-rich re 54.9 12 0.00026 20.0 1.9 16 157-172 2-17 (26)
93 smart00369 LRR_TYP Leucine-ric 54.9 12 0.00026 20.0 1.9 16 157-172 2-17 (26)
94 smart00365 LRR_SD22 Leucine-ri 50.9 11 0.00024 20.5 1.3 14 507-520 2-15 (26)
95 KOG3735 Tropomodulin and leiom 49.9 18 0.0004 34.1 3.4 89 121-211 188-279 (353)
96 KOG3735 Tropomodulin and leiom 49.5 37 0.00081 32.2 5.2 94 423-516 188-292 (353)
97 KOG0532 Leucine-rich repeat (L 41.7 6 0.00013 40.2 -1.1 85 431-521 164-248 (722)
98 KOG0532 Leucine-rich repeat (L 39.1 11 0.00023 38.5 0.2 127 374-518 144-271 (722)
99 PF13306 LRR_5: Leucine rich r 29.8 8.2 0.00018 31.0 -2.0 61 429-492 31-91 (129)
100 smart00364 LRR_BAC Leucine-ric 26.1 34 0.00073 18.7 0.7 14 507-520 2-15 (26)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=100.00 E-value=2.3e-33 Score=254.98 Aligned_cols=371 Identities=24% Similarity=0.409 Sum_probs=258.9
Q ss_pred CCCHHHHHHHHhccCChHHHHHHHHHhHHHHHhh----ccccceeEecCcccCChhHHHhhCCCceEEEecCCCCCCCCC
Q 007912 9 SLPEDVLEHVFSFVQSDKDRNVISLVCKSWYEIE----RWCRRRIFVGNCYAVSPRMAIRRFPEVRSVELKGKPHFADFN 84 (585)
Q Consensus 9 ~LP~ell~~If~~L~~~~~~~~~~~Vcr~W~~~~----~~~~~~l~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~ 84 (585)
.||+|++.+||++|+ .+.+.+++++|+-|+-.+ .|++..++..-.+..
T Consensus 74 ~LPpEl~lkvFS~LD-tksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~--------------------------- 125 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLD-TKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVD--------------------------- 125 (483)
T ss_pred cCCHHHHHHHHHHHh-HHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCC---------------------------
Confidence 699999999999999 789999999999999987 344333322111110
Q ss_pred CCcCCCCCcchhHHHHHHccC-CCCcEEEeccc-ccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEE
Q 007912 85 LVPEGWGGYVYPWIRAMAGGY-PWLEELKLKRM-VVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKEL 162 (585)
Q Consensus 85 ~~~~~~~~~~~~~l~~l~~~~-~~L~~L~l~~~-~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L 162 (585)
.+++..+..++ ..|+.|.+.++ .+.+..+..+...||++++|.+.+|..+++..+..+.+.|++|++|
T Consensus 126 ----------g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l 195 (483)
T KOG4341|consen 126 ----------GGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHL 195 (483)
T ss_pred ----------CcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhh
Confidence 11123333333 35677777775 3566677777778888888888888888888888888888888777
Q ss_pred EcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHHHHHhhCCCceEEc
Q 007912 163 DLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVELG 242 (585)
Q Consensus 163 ~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 242 (585)
++..|. .+++..++.+...|++|++++++.|..+.
T Consensus 196 ~L~~c~-----------------------------~iT~~~Lk~la~gC~kL~~lNlSwc~qi~---------------- 230 (483)
T KOG4341|consen 196 NLHSCS-----------------------------SITDVSLKYLAEGCRKLKYLNLSWCPQIS---------------- 230 (483)
T ss_pred hhcccc-----------------------------hhHHHHHHHHHHhhhhHHHhhhccCchhh----------------
Confidence 776543 34455555566666666666665554111
Q ss_pred CccccCCCCchhhhhhhhhhhcccccccccCccccCcCchhhHhhcCCCCCEEEeeccc-CCchhHHHHHhcCCCCcEEe
Q 007912 243 TGTYSADLRPDIFSNLAGAFSGCKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYAT-IQSPDLIKLVSQCPKLQCLW 321 (585)
Q Consensus 243 l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~~~~L~~L~ 321 (585)
...+..+..++.+++.+.+.+|. ...+.+
T Consensus 231 ------------------------------------~~gv~~~~rG~~~l~~~~~kGC~e~~le~l-------------- 260 (483)
T KOG4341|consen 231 ------------------------------------GNGVQALQRGCKELEKLSLKGCLELELEAL-------------- 260 (483)
T ss_pred ------------------------------------cCcchHHhccchhhhhhhhcccccccHHHH--------------
Confidence 01122222233334444344443 333333
Q ss_pred cccccchhHHHHHHhcCCCCceEEeccCCCCCCCCCCCcchHHHHHHHhCCCCCcee-hhcccCCcHHHHHHHHhhCCCC
Q 007912 322 VLDYIEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSLTEQGLVLVSEGCPKLESV-LYFCRRMSNDALVTIAKNRPSM 400 (585)
Q Consensus 322 l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~~l~~~~~~L~~L-~~~~~~~~~~~~~~l~~~~~~L 400 (585)
..+..+++.+.++++. .|..++|.++..+..+|..|+.| ..+|.++++..+.++.+++++|
T Consensus 261 ----------~~~~~~~~~i~~lnl~--------~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L 322 (483)
T KOG4341|consen 261 ----------LKAAAYCLEILKLNLQ--------HCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNL 322 (483)
T ss_pred ----------HHHhccChHhhccchh--------hhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCce
Confidence 3333455555566655 45677777777777777777777 4667777777777777777888
Q ss_pred ceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC--CCCHHHHHHHHhhccccceeeccccC-CCHHHHHHH
Q 007912 401 IRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG--LLTDRVFEYIGTYAKKLEMLSVAFAG-ESDLGLHHV 477 (585)
Q Consensus 401 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l 477 (585)
+.|.+.. |..++ +.++..+..+++.|+.+++.+ .++|..+..++..|+.|++|.++.|. +||.++..+
T Consensus 323 ~~l~l~~-----c~~fs----d~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l 393 (483)
T KOG4341|consen 323 QVLELSG-----CQQFS----DRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL 393 (483)
T ss_pred EEEeccc-----cchhh----hhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence 8777755 44566 777777777888888888866 56777788888889999999999997 799988877
Q ss_pred Hh---cCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeeccc-CCHHHHHHHHhhCCCcEEEEe
Q 007912 478 LS---GCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCS-VSFEACKLLGQKMPRLNVEVI 539 (585)
Q Consensus 478 ~~---~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~l~~~~~~l~~~~~ 539 (585)
.. +...|+.+++++|+.+.+........|++|+.+++.+|+ ++.++++.++.++|+++++..
T Consensus 394 ~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 394 SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 43 357799999999977666666788999999999999996 999999999999999887654
No 2
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.4e-24 Score=187.62 Aligned_cols=199 Identities=25% Similarity=0.344 Sum_probs=116.0
Q ss_pred CCCCCHHHHHHHHhccCChHHHHHHHHHhHHHHHhhccc--cceeEecCcc--cCChhHHHhhC----------------
Q 007912 7 YSSLPEDVLEHVFSFVQSDKDRNVISLVCKSWYEIERWC--RRRIFVGNCY--AVSPRMAIRRF---------------- 66 (585)
Q Consensus 7 i~~LP~ell~~If~~L~~~~~~~~~~~Vcr~W~~~~~~~--~~~l~~~~~~--~~~~~~l~~~~---------------- 66 (585)
++.||||+++.||+.|+ .+++.+++.|||||+++.... |..+...... .....++..+-
T Consensus 98 ~~slpDEill~IFs~L~-kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~prl 176 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLC-KKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQPRL 176 (419)
T ss_pred cccCCHHHHHHHHHhcc-HHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcchhhhcCchh
Confidence 78899999999999999 789999999999999998322 2222222211 11112222221
Q ss_pred --------CCceEEEecCCCCCCCCCCCcCCCCCcchhHHHHHHccCCCCcEEEecccccChHHHHHHHHhCCCCcEEee
Q 007912 67 --------PEVRSVELKGKPHFADFNLVPEGWGGYVYPWIRAMAGGYPWLEELKLKRMVVTDESLELIAKSFKNFKVLVL 138 (585)
Q Consensus 67 --------~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L 138 (585)
.+++.+|++. ......-+..++..|.+|+.|.+.++.++|.....++++ .+|+.|++
T Consensus 177 ae~~~~frsRlq~lDLS~--------------s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN-~~L~~lnl 241 (419)
T KOG2120|consen 177 AEHFSPFRSRLQHLDLSN--------------SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN-SNLVRLNL 241 (419)
T ss_pred hhhhhhhhhhhHHhhcch--------------hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcc-ccceeecc
Confidence 0122233321 111333455566666677777777766666666666654 56777777
Q ss_pred cccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEE
Q 007912 139 SSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLR 218 (585)
Q Consensus 139 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~ 218 (585)
+.|.+++..++.-++.+|+.|.+|+++.|....+.+..+.. .--++|+.|+++++...+....+..+.+.||+|.+|+
T Consensus 242 sm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~--hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LD 319 (419)
T KOG2120|consen 242 SMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA--HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLD 319 (419)
T ss_pred ccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHh--hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeec
Confidence 77767766666666666777777776666543332222211 1123566666665543444445555556666666666
Q ss_pred eCCCC
Q 007912 219 LNRAV 223 (585)
Q Consensus 219 l~~~~ 223 (585)
++++.
T Consensus 320 LSD~v 324 (419)
T KOG2120|consen 320 LSDSV 324 (419)
T ss_pred ccccc
Confidence 65554
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=1.3e-21 Score=217.95 Aligned_cols=160 Identities=19% Similarity=0.118 Sum_probs=77.3
Q ss_pred hHHHhhCCCceEEEecCCCCCCCCCCCcCCCCCcchhHHHHHHccCCCCcEEEecccccChHHHHHHHHhCCCCcEEeec
Q 007912 60 RMAIRRFPEVRSVELKGKPHFADFNLVPEGWGGYVYPWIRAMAGGYPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLS 139 (585)
Q Consensus 60 ~~l~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~ 139 (585)
..+...+.+|+.|+++++.-.. .+|. ..+++|++|++++|.+.......+ ..+++|++|+++
T Consensus 111 ~~~~~~l~~L~~L~Ls~n~l~~---~~p~--------------~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~ 172 (968)
T PLN00113 111 DDIFTTSSSLRYLNLSNNNFTG---SIPR--------------GSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLG 172 (968)
T ss_pred hHHhccCCCCCEEECcCCcccc---ccCc--------------cccCCCCEEECcCCcccccCChHH-hcCCCCCEEECc
Confidence 3455578899999998754211 1110 134566666666665543222222 245666666666
Q ss_pred ccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEe
Q 007912 140 SCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRL 219 (585)
Q Consensus 140 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l 219 (585)
++. +....... +.++++|++|++++|.+.......+. .+++|++|+++++. +... +......+++|++|++
T Consensus 173 ~n~-l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~----~l~~L~~L~L~~n~--l~~~-~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 173 GNV-LVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELG----QMKSLKWIYLGYNN--LSGE-IPYEIGGLTSLNHLDL 243 (968)
T ss_pred cCc-ccccCChh-hhhCcCCCeeeccCCCCcCcCChHHc----CcCCccEEECcCCc--cCCc-CChhHhcCCCCCEEEC
Confidence 542 11111111 23556666666666654433222222 23456666665442 2211 1111234555666666
Q ss_pred CCCCChHHHHHHHhhCCCceEEcCccc
Q 007912 220 NRAVPLEKLAHLLRQAPQLVELGTGTY 246 (585)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~L~~L~l~~~ 246 (585)
+++.....++..+..+++|+.|.+..+
T Consensus 244 ~~n~l~~~~p~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 244 VYNNLTGPIPSSLGNLKNLQYLFLYQN 270 (968)
T ss_pred cCceeccccChhHhCCCCCCEEECcCC
Confidence 555433334444555555555555443
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=2.6e-21 Score=215.72 Aligned_cols=254 Identities=19% Similarity=0.148 Sum_probs=154.3
Q ss_pred hHHHhhCCCceEEEecCCCCCCCCCCCcCCCCCcchhHHHHHHccCCCCcEEEecccccChHHHHHHHHhCCCCcEEeec
Q 007912 60 RMAIRRFPEVRSVELKGKPHFADFNLVPEGWGGYVYPWIRAMAGGYPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLS 139 (585)
Q Consensus 60 ~~l~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~ 139 (585)
+..+..+++|+.|+++++.-.. .+ -..+...+++|++|++++|.++..... ..+++|++|+++
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~---~i-----------p~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls 148 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSG---PI-----------PDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLS 148 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCC---cC-----------ChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECc
Confidence 4567789999999998754110 11 123345778999999999877542111 246899999999
Q ss_pred ccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEe
Q 007912 140 SCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRL 219 (585)
Q Consensus 140 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l 219 (585)
++. ++.. +......+++|++|++++|.+.......+. .+++|++|+++++. +... +......+++|+.|++
T Consensus 149 ~n~-~~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~----~l~~L~~L~L~~n~--l~~~-~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 149 NNM-LSGE-IPNDIGSFSSLKVLDLGGNVLVGKIPNSLT----NLTSLEFLTLASNQ--LVGQ-IPRELGQMKSLKWIYL 219 (968)
T ss_pred CCc-cccc-CChHHhcCCCCCEEECccCcccccCChhhh----hCcCCCeeeccCCC--CcCc-CChHHcCcCCccEEEC
Confidence 873 3322 222234889999999999987654333343 46699999999773 3322 1223356799999999
Q ss_pred CCCCChHHHHHHHhhCCCceEEcCccccCCCCchhhhhhhhhhhcccccccccCccccCcCchhhHhhcCCCCCEEEeec
Q 007912 220 NRAVPLEKLAHLLRQAPQLVELGTGTYSADLRPDIFSNLAGAFSGCKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSY 299 (585)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 299 (585)
+++.....++..+..+++|++|++.++.... .+...+..+++|++|.-..+.-...++.....+++|+.|++++
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG------PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceecc------ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcC
Confidence 9887555677778899999999997765432 2334455566666664222111112222233456677777766
Q ss_pred ccCCchhHHHHHhcCCCCcEEecccc-cchhHHHHHHhcCCCCceEEec
Q 007912 300 ATIQSPDLIKLVSQCPKLQCLWVLDY-IEDSGLEALAATCKDLRELRVF 347 (585)
Q Consensus 300 ~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~l~ 347 (585)
|.+.... ...+..+++|+.|++.++ +... .......+++|+.|++.
T Consensus 294 n~l~~~~-p~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~ 340 (968)
T PLN00113 294 NSLSGEI-PELVIQLQNLEILHLFSNNFTGK-IPVALTSLPRLQVLQLW 340 (968)
T ss_pred CeeccCC-ChhHcCCCCCcEEECCCCccCCc-CChhHhcCCCCCEEECc
Confidence 6543221 222345566666666554 2211 11112245566666665
No 5
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.86 E-value=5.7e-22 Score=181.15 Aligned_cols=248 Identities=26% Similarity=0.395 Sum_probs=203.3
Q ss_pred cCcCchhhHhhcCCCCCEEEeeccc-CCchhHHHHHhcCCCCcEEecccc--cchhHHHHHHhcCCCCceEEeccCCCCC
Q 007912 277 VVPAYLPAVYSVCSGLTTLNLSYAT-IQSPDLIKLVSQCPKLQCLWVLDY--IEDSGLEALAATCKDLRELRVFPSEPFG 353 (585)
Q Consensus 277 ~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 353 (585)
+++..+..+...|++|+++++..|. +++..+..+.+.|++|+.|+++.+ +...++..+..++..++.+...
T Consensus 177 iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~k------ 250 (483)
T KOG4341|consen 177 ITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLK------ 250 (483)
T ss_pred ccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhc------
Confidence 3344444555567777777777766 777777777888888888888775 5667788888888888888888
Q ss_pred CCCCCCcchHHHHHHHhCCCCCcee-hhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhC
Q 007912 354 DEPNVSLTEQGLVLVSEGCPKLESV-LYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHC 432 (585)
Q Consensus 354 ~~~~~~l~~~~l~~l~~~~~~L~~L-~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (585)
||.....+.+......++.+.++ +..|..++|..+..+...|..|+.|..++ |..++ +..+..+.+++
T Consensus 251 --GC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~-----~t~~~----d~~l~aLg~~~ 319 (483)
T KOG4341|consen 251 --GCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSS-----CTDIT----DEVLWALGQHC 319 (483)
T ss_pred --ccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccC-----CCCCc----hHHHHHHhcCC
Confidence 67899999999888889999888 58899999999999999999999998876 55677 88999999999
Q ss_pred CCCcEEecCC--CCCHHHHHHHHhhccccceeeccccC-CCHHHHHHHHhcCCCCCeEEeeCC-CCChHHHHHHH---Hh
Q 007912 433 KDLRRLSLSG--LLTDRVFEYIGTYAKKLEMLSVAFAG-ESDLGLHHVLSGCDSLRKLEIMDC-PFGDKALLANA---AK 505 (585)
Q Consensus 433 ~~L~~L~l~~--~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~---~~ 505 (585)
++|+.|.+++ .++|.++..++..++.|+.+++..|. ++|..+..++.+|+.|+.|.++.| .++|+++..+- ..
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 9999999988 78999999999999999999999998 678789999889999999999999 88999765443 34
Q ss_pred cccCCEEEeeccc-CCHHHHHHHHhhCCCcE-EEEecCC
Q 007912 506 LETMRSLWMSSCS-VSFEACKLLGQKMPRLN-VEVIDES 542 (585)
Q Consensus 506 l~~L~~L~l~~~~-i~~~~~~~l~~~~~~l~-~~~~~~~ 542 (585)
...|+.+.+++|+ ++++..+.+ ..+++++ +..++..
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l-~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHL-SICRNLERIELIDCQ 437 (483)
T ss_pred ccccceeeecCCCCchHHHHHHH-hhCcccceeeeechh
Confidence 6689999999997 566666666 4688875 4555544
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.70 E-value=3.5e-18 Score=162.78 Aligned_cols=342 Identities=16% Similarity=0.152 Sum_probs=171.8
Q ss_pred CCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCC
Q 007912 106 PWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCT 185 (585)
Q Consensus 106 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 185 (585)
+.-+.|++++|.+.+..+..+. .+|||+++.+... .+ ..+........+|++|++.+|.+.....+.+..++
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~-nl~nLq~v~l~~N-~L--t~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~---- 149 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFY-NLPNLQEVNLNKN-EL--TRIPRFGHESGHLEKLDLRHNLISSVTSEELSALP---- 149 (873)
T ss_pred cceeeeeccccccccCcHHHHh-cCCcceeeeeccc-hh--hhcccccccccceeEEeeeccccccccHHHHHhHh----
Confidence 4556788888777766665554 5678888877653 11 22333333445677788877776665555555433
Q ss_pred cccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHH-HHHHhhCCCceEEcCccccCCCCchhhhhhhhhhhc
Q 007912 186 SLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKL-AHLLRQAPQLVELGTGTYSADLRPDIFSNLAGAFSG 264 (585)
Q Consensus 186 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~ 264 (585)
.|++|+++.+ .++.-.... ...-+++++|+|+++. +..+ ...|..+.+|..|.+......
T Consensus 150 alrslDLSrN--~is~i~~~s-fp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrit--------------- 210 (873)
T KOG4194|consen 150 ALRSLDLSRN--LISEIPKPS-FPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRIT--------------- 210 (873)
T ss_pred hhhhhhhhhc--hhhcccCCC-CCCCCCceEEeecccc-ccccccccccccchheeeecccCccc---------------
Confidence 7777777744 121110000 1112567777776553 1111 111222333333333221111
Q ss_pred ccccccccCccccCcCchhhHhhcCCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc----cchhHHHHHHhcCCC
Q 007912 265 CKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY----IEDSGLEALAATCKD 340 (585)
Q Consensus 265 ~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~----~~~~~~~~l~~~~~~ 340 (585)
......+..+++|+.|+|..|.+.-..... ++.+++|+.|.+..+ +.|.. ...+.+
T Consensus 211 ---------------tLp~r~Fk~L~~L~~LdLnrN~irive~lt-FqgL~Sl~nlklqrN~I~kL~DG~----Fy~l~k 270 (873)
T KOG4194|consen 211 ---------------TLPQRSFKRLPKLESLDLNRNRIRIVEGLT-FQGLPSLQNLKLQRNDISKLDDGA----FYGLEK 270 (873)
T ss_pred ---------------ccCHHHhhhcchhhhhhccccceeeehhhh-hcCchhhhhhhhhhcCcccccCcc----eeeecc
Confidence 001112234677777777776643322211 346677777777653 22211 125667
Q ss_pred CceEEeccCCCCCCCCCCCcchHHHHHHHhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCc
Q 007912 341 LRELRVFPSEPFGDEPNVSLTEQGLVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEP 420 (585)
Q Consensus 341 L~~L~l~~~~~~~~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~ 420 (585)
+++|++.. +++....-..+. ++..|+.|+++.+.+......... .|++|+.|+|++....+ +.
T Consensus 271 me~l~L~~---------N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~Ws-ftqkL~~LdLs~N~i~~---l~--- 333 (873)
T KOG4194|consen 271 MEHLNLET---------NRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDSWS-FTQKLKELDLSSNRITR---LD--- 333 (873)
T ss_pred cceeeccc---------chhhhhhccccc-ccchhhhhccchhhhheeecchhh-hcccceeEecccccccc---CC---
Confidence 77777762 232221111111 255566665554444433333332 36777777777643311 11
Q ss_pred chhhHHHHhhhCCCCcEEecCCCCCHHHHHHHHhhccccceeeccccC----CCHHHHHHHHhcCCCCCeEEeeCCCCCh
Q 007912 421 LDVGFGAIVQHCKDLRRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAG----ESDLGLHHVLSGCDSLRKLEIMDCPFGD 496 (585)
Q Consensus 421 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~----i~~~~~~~l~~~~~~L~~L~l~~~~~~~ 496 (585)
... +..+..|++|.|+.+--+.-.+.-....++|++|+|.+|. |.| +..++ .++++|++|.+.+|++..
T Consensus 334 -~~s----f~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED-aa~~f-~gl~~LrkL~l~gNqlk~ 406 (873)
T KOG4194|consen 334 -EGS----FRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED-AAVAF-NGLPSLRKLRLTGNQLKS 406 (873)
T ss_pred -hhH----HHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec-chhhh-ccchhhhheeecCceeee
Confidence 111 2334567777776632222222222345667777777776 334 22332 567777777777775443
Q ss_pred HHHHHHHHhcccCCEEEeecccC
Q 007912 497 KALLANAAKLETMRSLWMSSCSV 519 (585)
Q Consensus 497 ~~~~~~~~~l~~L~~L~l~~~~i 519 (585)
..- ..+.++++|++|++.+|.|
T Consensus 407 I~k-rAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 407 IPK-RAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred cch-hhhccCcccceecCCCCcc
Confidence 321 2455677777777777753
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=9.6e-16 Score=148.89 Aligned_cols=75 Identities=23% Similarity=0.182 Sum_probs=45.2
Q ss_pred ccccceeeccccCCCHHHHHHHHhcC----CCCCeEEeeCCCCChHHHHHH---HHhcccCCEEEeecccCCHHHHHHHH
Q 007912 456 AKKLEMLSVAFAGESDLGLHHVLSGC----DSLRKLEIMDCPFGDKALLAN---AAKLETMRSLWMSSCSVSFEACKLLG 528 (585)
Q Consensus 456 ~~~L~~L~l~~~~i~~~~~~~l~~~~----~~L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~~~~~l~ 528 (585)
+++|++|++++|.+++.++..++..+ +.|++|++++|.+++.+...+ +..+++|+++++++|.+++++.+.++
T Consensus 220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~ 299 (319)
T cd00116 220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA 299 (319)
T ss_pred cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHH
Confidence 45566666666666666655554443 567777777776665444333 33345677777777777766666665
Q ss_pred hh
Q 007912 529 QK 530 (585)
Q Consensus 529 ~~ 530 (585)
+.
T Consensus 300 ~~ 301 (319)
T cd00116 300 ES 301 (319)
T ss_pred HH
Confidence 43
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.65 E-value=1e-14 Score=141.75 Aligned_cols=213 Identities=23% Similarity=0.245 Sum_probs=137.6
Q ss_pred hhcCCCCCEEEeecccCCc---hhHHHHHhcCCCCcEEecccc-cchhHHHHHH---hcC-CCCceEEeccCCCCCCCCC
Q 007912 286 YSVCSGLTTLNLSYATIQS---PDLIKLVSQCPKLQCLWVLDY-IEDSGLEALA---ATC-KDLRELRVFPSEPFGDEPN 357 (585)
Q Consensus 286 ~~~~~~L~~L~L~~~~~~~---~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~---~~~-~~L~~L~l~~~~~~~~~~~ 357 (585)
...+++|+.|++++|.+.. ..+..+... ++|++|+++++ +++.+...+. ..+ ++|++|++.++
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-------- 147 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN-------- 147 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC--------
Confidence 3347799999998888543 233334444 66888888875 5544444332 234 78888888842
Q ss_pred CCcchHH---HHHHHhCCCCCceehhcccCCcHHHHHHHHhh---CCCCceeeeeecCCCCCCCCCCCcchhh---HHHH
Q 007912 358 VSLTEQG---LVLVSEGCPKLESVLYFCRRMSNDALVTIAKN---RPSMIRFRLCIIDPQTPDYLTLEPLDVG---FGAI 428 (585)
Q Consensus 358 ~~l~~~~---l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~---~~~L~~L~L~~~~~~~~~~~~~~~~~~~---~~~~ 428 (585)
.++..+ +......+++|++|.+..+.+++..+..+... +++|+.|+++++. ++ +.+ +...
T Consensus 148 -~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~------i~----~~~~~~l~~~ 216 (319)
T cd00116 148 -RLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG------LT----DEGASALAET 216 (319)
T ss_pred -cCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc------cC----hHHHHHHHHH
Confidence 344333 23333446788888766677777666655433 3588888887653 22 223 3344
Q ss_pred hhhCCCCcEEecCC-CCCHHHHHHHHhhc----cccceeeccccCCCHHHHHHHHh---cCCCCCeEEeeCCCCChHHHH
Q 007912 429 VQHCKDLRRLSLSG-LLTDRVFEYIGTYA----KKLEMLSVAFAGESDLGLHHVLS---GCDSLRKLEIMDCPFGDKALL 500 (585)
Q Consensus 429 ~~~~~~L~~L~l~~-~~~~~~~~~l~~~~----~~L~~L~l~~~~i~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~ 500 (585)
+..+++|++|++++ .+++.++..+...+ +.|+.|++++|.+++.+...+.. .+++|+++++++|.+++++..
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~ 296 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence 56677888888887 67777777776653 67888888888887766655433 356788888888888877644
Q ss_pred HHH---Hhc-ccCCEEEeeccc
Q 007912 501 ANA---AKL-ETMRSLWMSSCS 518 (585)
Q Consensus 501 ~~~---~~l-~~L~~L~l~~~~ 518 (585)
.+. ... +.|+.|++.+++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 297 LLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHhhcCCchhhcccCCCC
Confidence 333 222 577888776654
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.64 E-value=3.2e-17 Score=156.36 Aligned_cols=340 Identities=17% Similarity=0.159 Sum_probs=182.1
Q ss_pred HHccCCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCccccccccc
Q 007912 101 MAGGYPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKF 180 (585)
Q Consensus 101 l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 180 (585)
.+..+|+|+.+++..|.++. ++.+.....+|+.|+|.+. .++...-.++. .++.|++||++.|.+.......++.
T Consensus 97 ~f~nl~nLq~v~l~~N~Lt~--IP~f~~~sghl~~L~L~~N-~I~sv~se~L~-~l~alrslDLSrN~is~i~~~sfp~- 171 (873)
T KOG4194|consen 97 FFYNLPNLQEVNLNKNELTR--IPRFGHESGHLEKLDLRHN-LISSVTSEELS-ALPALRSLDLSRNLISEIPKPSFPA- 171 (873)
T ss_pred HHhcCCcceeeeeccchhhh--cccccccccceeEEeeecc-ccccccHHHHH-hHhhhhhhhhhhchhhcccCCCCCC-
Confidence 44678999999999886653 3444445567999999864 44444434443 6688999999999877655444443
Q ss_pred CCCCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHH-HHHHhhCCCceEEcCccccCCCCchhhhhhh
Q 007912 181 PDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKL-AHLLRQAPQLVELGTGTYSADLRPDIFSNLA 259 (585)
Q Consensus 181 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 259 (585)
-.++++|+++++ .|+.-....+ ..+.+|.+|.|+++. +..+ +..|+.+|+|+.|++........ -.
T Consensus 172 ---~~ni~~L~La~N--~It~l~~~~F-~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~iriv------e~ 238 (873)
T KOG4194|consen 172 ---KVNIKKLNLASN--RITTLETGHF-DSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIV------EG 238 (873)
T ss_pred ---CCCceEEeeccc--cccccccccc-cccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeee------hh
Confidence 238999999977 4444332222 234588889988875 3333 45566789999888754332210 01
Q ss_pred hhhhccccccccc----CccccCcCchhhHhhcCCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc-cchhHHHHH
Q 007912 260 GAFSGCKELKSLS----GFWDVVPAYLPAVYSVCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY-IEDSGLEAL 334 (585)
Q Consensus 260 ~~~~~~~~L~~L~----~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l 334 (585)
..|+.+++|+.|. ....+++.. +-.+.++++|+|..|.+....-.. +-.+..|+.|+++.+ +..-....+
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~----Fy~l~kme~l~L~~N~l~~vn~g~-lfgLt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGA----FYGLEKMEHLNLETNRLQAVNEGW-LFGLTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCcc----eeeecccceeecccchhhhhhccc-ccccchhhhhccchhhhheeecchh
Confidence 2345556666552 222233322 224788888888888743322212 225677777877764 222222222
Q ss_pred HhcCCCCceEEeccCCCCCCCCCCCcchHHHHHHHhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCC
Q 007912 335 AATCKDLRELRVFPSEPFGDEPNVSLTEQGLVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPD 414 (585)
Q Consensus 335 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 414 (585)
. .+++|+.|+++. +.++.-.-..+.. +..|+.|.++.+.++.-.-..+ ..+.+|++|+|+.....+|
T Consensus 314 s-ftqkL~~LdLs~---------N~i~~l~~~sf~~-L~~Le~LnLs~Nsi~~l~e~af-~~lssL~~LdLr~N~ls~~- 380 (873)
T KOG4194|consen 314 S-FTQKLKELDLSS---------NRITRLDEGSFRV-LSQLEELNLSHNSIDHLAEGAF-VGLSSLHKLDLRSNELSWC- 380 (873)
T ss_pred h-hcccceeEeccc---------cccccCChhHHHH-HHHhhhhcccccchHHHHhhHH-HHhhhhhhhcCcCCeEEEE-
Confidence 2 577788888862 3333222222222 4455666444344432211111 2345666666654432111
Q ss_pred CCCCCcchhhHHHHhhhCCCCcEEecCC-C---CCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEe
Q 007912 415 YLTLEPLDVGFGAIVQHCKDLRRLSLSG-L---LTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEI 489 (585)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~---~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l 489 (585)
+. | -...+..++.|++|.+.| . |...++ ..++.|+.|+|++|.|......++ ..+ .|++|.+
T Consensus 381 -IE----D--aa~~f~gl~~LrkL~l~gNqlk~I~krAf----sgl~~LE~LdL~~NaiaSIq~nAF-e~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 381 -IE----D--AAVAFNGLPSLRKLRLTGNQLKSIPKRAF----SGLEALEHLDLGDNAIASIQPNAF-EPM-ELKELVM 446 (873)
T ss_pred -Ee----c--chhhhccchhhhheeecCceeeecchhhh----ccCcccceecCCCCcceeeccccc-ccc-hhhhhhh
Confidence 11 2 122244456666666655 1 222221 234556666666665443333333 222 4444443
No 10
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.57 E-value=1.2e-14 Score=150.21 Aligned_cols=283 Identities=29% Similarity=0.402 Sum_probs=167.7
Q ss_pred CCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHH--HHHHHhhCCCceEEcCccccCCCCchhhhhhhh
Q 007912 183 TCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEK--LAHLLRQAPQLVELGTGTYSADLRPDIFSNLAG 260 (585)
Q Consensus 183 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 260 (585)
.+..++.++...+...........+...++.|+.|.+.+|..+.. +..+...+++|++|+++++...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----------- 227 (482)
T KOG1947|consen 159 GLANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLL----------- 227 (482)
T ss_pred HHHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccc-----------
Confidence 344677777776655667777777777788999998888876554 5666677777777777542100
Q ss_pred hhhcccccccccCccccCcCchhhHhhcCCCCCEEEeeccc-CCchhHHHHHhcCCCCcEEecccc--cchhHHHHHHhc
Q 007912 261 AFSGCKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYAT-IQSPDLIKLVSQCPKLQCLWVLDY--IEDSGLEALAAT 337 (585)
Q Consensus 261 ~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~~~l~~~ 337 (585)
..........+...+++|+.|+++++. +++.++..+...|++|+.|.+..+ +++.++..++..
T Consensus 228 --------------~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~ 293 (482)
T KOG1947|consen 228 --------------ITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAER 293 (482)
T ss_pred --------------cccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHh
Confidence 001111122244456777888887777 777777777777777777776554 467777777777
Q ss_pred CCCCceEEeccCCCCCCCCCCCcchHHHHHHHhCCCCCceeh-hcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCC
Q 007912 338 CKDLRELRVFPSEPFGDEPNVSLTEQGLVLVSEGCPKLESVL-YFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYL 416 (585)
Q Consensus 338 ~~~L~~L~l~~~~~~~~~~~~~l~~~~l~~l~~~~~~L~~L~-~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~ 416 (585)
|+.|++|+++ +|..+++.++..+...|++|+.|. ..+.. |+.++.+.+.++.. .
T Consensus 294 ~~~L~~L~l~--------~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~------------c~~l~~~~l~~~~~-----~ 348 (482)
T KOG1947|consen 294 CPSLRELDLS--------GCHGLTDSGLEALLKNCPNLRELKLLSLNG------------CPSLTDLSLSGLLT-----L 348 (482)
T ss_pred cCcccEEeee--------cCccchHHHHHHHHHhCcchhhhhhhhcCC------------CccHHHHHHHHhhc-----c
Confidence 7777777777 456666666666666666666652 22111 33444443332210 1
Q ss_pred CCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCC-CC
Q 007912 417 TLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDC-PF 494 (585)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~-~~ 494 (585)
.. +.....++..|++|+.+.+.. ...+.+...+...|+. ++ .++......+.+++.|+++.| ..
T Consensus 349 ~~---d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~----------l~-~~l~~~~~~~~~l~~L~l~~~~~~ 414 (482)
T KOG1947|consen 349 TS---DDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPN----------LT-ESLELRLCRSDSLRVLNLSDCRLV 414 (482)
T ss_pred Cc---hhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcc----------cc-hHHHHHhccCCccceEecccCccc
Confidence 00 123334455666666666644 2333333233333332 34 444444344445788888888 66
Q ss_pred ChHHHHHHHHhcccCCEEEeeccc-CCHHHHHHHHh
Q 007912 495 GDKALLANAAKLETMRSLWMSSCS-VSFEACKLLGQ 529 (585)
Q Consensus 495 ~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~l~~ 529 (585)
++..+......+..++.+++.+|. ++......+..
T Consensus 415 t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 450 (482)
T KOG1947|consen 415 TDKGLRCLADSCSNLKDLDLSGCRVITLKSLEGFAS 450 (482)
T ss_pred cccchHHHhhhhhccccCCccCcccccchhhhhhhc
Confidence 777766555447788888888885 56666655543
No 11
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.54 E-value=7.5e-14 Score=125.68 Aligned_cols=108 Identities=22% Similarity=0.234 Sum_probs=70.0
Q ss_pred HHHHHccCCCCcEEEecccccChHHHHHHHHhC---CCCcEEeecccC--CCCHH------HHHHHHhcCCCCcEEEccc
Q 007912 98 IRAMAGGYPWLEELKLKRMVVTDESLELIAKSF---KNFKVLVLSSCE--GFSTH------GLAAIAADCKNLKELDLWE 166 (585)
Q Consensus 98 l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~---~~L~~L~L~~~~--~~~~~------~l~~l~~~~~~L~~L~l~~ 166 (585)
+.........++.++|+++.+.......++..+ ++|+..++++-. ...+. .+......||+|++|++|.
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 555666778999999999999988887776554 446666655421 11111 1222334778899999998
Q ss_pred CCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHH
Q 007912 167 SDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERL 207 (585)
Q Consensus 167 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l 207 (585)
|-+...+.+.+..+..+|..|++|.+.+| .+.+.+-..+
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~--Glg~~ag~~l 140 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNC--GLGPEAGGRL 140 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcC--CCChhHHHHH
Confidence 88877776666666666666666666666 4555444443
No 12
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.53 E-value=6.2e-14 Score=126.22 Aligned_cols=219 Identities=20% Similarity=0.208 Sum_probs=145.1
Q ss_pred cCCCCCEEEeecccCCc---hhHHHHHhcCCCCcEEecccc-cchhHHHHHHhcCCCCceEEeccCCCCCCCCCCCcchH
Q 007912 288 VCSGLTTLNLSYATIQS---PDLIKLVSQCPKLQCLWVLDY-IEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSLTEQ 363 (585)
Q Consensus 288 ~~~~L~~L~L~~~~~~~---~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 363 (585)
.+|+|+.|+||.|.+.. +.+..++++|..|++|++.+| ++..+-..++..+. +|..
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~---~l~~----------------- 149 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALF---ELAV----------------- 149 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHH---HHHH-----------------
Confidence 46677777777776443 344455666777777777665 54444444332111 1111
Q ss_pred HHHHHHhCCCCCceehhcccCCcHHHHH---HHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEec
Q 007912 364 GLVLVSEGCPKLESVLYFCRRMSNDALV---TIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSL 440 (585)
Q Consensus 364 ~l~~l~~~~~~L~~L~~~~~~~~~~~~~---~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 440 (585)
......-++|++++.+.+.+.+.+.. ...+.+|.|+.+.+....++. .. ...+..-+.+||.|+.|+|
T Consensus 150 --~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~-eG------~~al~eal~~~~~LevLdl 220 (382)
T KOG1909|consen 150 --NKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRP-EG------VTALAEALEHCPHLEVLDL 220 (382)
T ss_pred --HhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccC-ch------hHHHHHHHHhCCcceeeec
Confidence 11112246677776555555554433 344566899999987654311 01 1134556789999999999
Q ss_pred CC-CCCHHHHHHHHhh---ccccceeeccccCCCHHHHHHHHh----cCCCCCeEEeeCCCCChHHHHHH---HHhcccC
Q 007912 441 SG-LLTDRVFEYIGTY---AKKLEMLSVAFAGESDLGLHHVLS----GCDSLRKLEIMDCPFGDKALLAN---AAKLETM 509 (585)
Q Consensus 441 ~~-~~~~~~~~~l~~~---~~~L~~L~l~~~~i~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~~~~---~~~l~~L 509 (585)
.. .++..+-..++.. .++|++|+++.|.+.+.|..++.. ..|+|+.|++.+|.++.++...+ ....|.|
T Consensus 221 ~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL 300 (382)
T KOG1909|consen 221 RDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDL 300 (382)
T ss_pred ccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhh
Confidence 87 5666666666554 568999999999998888766544 47899999999999987764433 3557899
Q ss_pred CEEEeecccC--CHHHHHHHHhhCCCcE
Q 007912 510 RSLWMSSCSV--SFEACKLLGQKMPRLN 535 (585)
Q Consensus 510 ~~L~l~~~~i--~~~~~~~l~~~~~~l~ 535 (585)
+.|++++|.+ .++++..++..++...
T Consensus 301 ~kLnLngN~l~e~de~i~ei~~~~~~~~ 328 (382)
T KOG1909|consen 301 EKLNLNGNRLGEKDEGIDEIASKFDTAH 328 (382)
T ss_pred HHhcCCcccccccchhHHHHHHhccccc
Confidence 9999999998 8889999988886544
No 13
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=8.4e-14 Score=122.39 Aligned_cols=204 Identities=21% Similarity=0.296 Sum_probs=132.4
Q ss_pred CCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc-cchhHHHHHHhcCCCCceEEeccCCCCCCCCCCCcchHHHHHH
Q 007912 290 SGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY-IEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSLTEQGLVLV 368 (585)
Q Consensus 290 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~~l 368 (585)
..|+++||+...++...+..++..|.+|+.|.+.+. +.|.....++ .-.+|+.|+++ +|+.++..++..+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA-kN~~L~~lnls--------m~sG~t~n~~~ll 255 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA-KNSNLVRLNLS--------MCSGFTENALQLL 255 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh-ccccceeeccc--------cccccchhHHHHH
Confidence 468888888877888888888888888888888875 6666666776 46678888888 5677777777766
Q ss_pred HhCCCCCcee-hhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCCCCCHH
Q 007912 369 SEGCPKLESV-LYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSGLLTDR 447 (585)
Q Consensus 369 ~~~~~~L~~L-~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 447 (585)
...|..|..| +.+|...++.....++.--++|+.|+++|+.. ++.+.
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rr--------------------------------nl~~s 303 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRR--------------------------------NLQKS 303 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHh--------------------------------hhhhh
Confidence 6666666666 34444444332222222224444444443311 34444
Q ss_pred HHHHHHhhccccceeeccccC-CCHHHHHHHHhcCCCCCeEEeeCC-CCChHHHHHHHHhcccCCEEEeecccCCHHHHH
Q 007912 448 VFEYIGTYAKKLEMLSVAFAG-ESDLGLHHVLSGCDSLRKLEIMDC-PFGDKALLANAAKLETMRSLWMSSCSVSFEACK 525 (585)
Q Consensus 448 ~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~ 525 (585)
.+..+...||+|..|+|+.|. +++..+..+ -.++.|++|.++.| .+.+..+. .+...|+|.+|++.|| +++...+
T Consensus 304 h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~-~kf~~L~~lSlsRCY~i~p~~~~-~l~s~psl~yLdv~g~-vsdt~me 380 (419)
T KOG2120|consen 304 HLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FKFNYLQHLSLSRCYDIIPETLL-ELNSKPSLVYLDVFGC-VSDTTME 380 (419)
T ss_pred HHHHHHHhCCceeeeccccccccCchHHHHH-HhcchheeeehhhhcCCChHHee-eeccCcceEEEEeccc-cCchHHH
Confidence 555555666666777776665 566444444 56777888888877 66666544 4456778888888887 4455667
Q ss_pred HHHhhCCCcEEE
Q 007912 526 LLGQKMPRLNVE 537 (585)
Q Consensus 526 ~l~~~~~~l~~~ 537 (585)
.+.+.+|++++.
T Consensus 381 l~~e~~~~lkin 392 (419)
T KOG2120|consen 381 LLKEMLSHLKIN 392 (419)
T ss_pred HHHHhCcccccc
Confidence 777778887653
No 14
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.43 E-value=3.3e-13 Score=139.41 Aligned_cols=183 Identities=28% Similarity=0.463 Sum_probs=106.5
Q ss_pred hHhhcCCCCCEEEeeccc-CCchhHHHHHhcCCCCcEEecccc--cchhHHHHHHhcCCCCceEEeccCCCCCCCCCCCc
Q 007912 284 AVYSVCSGLTTLNLSYAT-IQSPDLIKLVSQCPKLQCLWVLDY--IEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSL 360 (585)
Q Consensus 284 ~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l 360 (585)
.+...|++|+.|.+..|. +++.++..+...|++|++|++..+ +++.++..+...|++++.|.+..+. +|..+
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~-----~c~~l 337 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN-----GCPSL 337 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC-----CCccH
Confidence 333345566666655555 566666666666666666666664 3466666666677777776655221 12223
Q ss_pred chHHHHHHHhCCCCCceehhcccCCc-HHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEe
Q 007912 361 TEQGLVLVSEGCPKLESVLYFCRRMS-NDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLS 439 (585)
Q Consensus 361 ~~~~l~~l~~~~~~L~~L~~~~~~~~-~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 439 (585)
++.++... .... +.........|++++.+.+.++. .. +.+...++.+||+|. ..
T Consensus 338 ~~~~l~~~--------------~~~~~d~~~~~~~~~~~~l~~~~l~~~~------~~----~~~~~~~l~gc~~l~-~~ 392 (482)
T KOG1947|consen 338 TDLSLSGL--------------LTLTSDDLAELILRSCPKLTDLSLSYCG------IS----DLGLELSLRGCPNLT-ES 392 (482)
T ss_pred HHHHHHHh--------------hccCchhHhHHHHhcCCCcchhhhhhhh------cc----CcchHHHhcCCcccc-hH
Confidence 33332222 2222 34444455567888888776542 22 445556677777662 22
Q ss_pred cCCCCCHHHHHHHHhhccccceeeccccC-CCHHHHHHHHhcCCCCCeEEeeCC-CCChHHHHHHHHh
Q 007912 440 LSGLLTDRVFEYIGTYAKKLEMLSVAFAG-ESDLGLHHVLSGCDSLRKLEIMDC-PFGDKALLANAAK 505 (585)
Q Consensus 440 l~~~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~ 505 (585)
+......+..++.|.++.|. .++..+......+..++.+++.+| .++..........
T Consensus 393 ---------l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 451 (482)
T KOG1947|consen 393 ---------LELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLEGFASN 451 (482)
T ss_pred ---------HHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhhhhhhcc
Confidence 22222223338888998887 688888877555888999999999 5565554433333
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.41 E-value=8.2e-13 Score=147.93 Aligned_cols=311 Identities=18% Similarity=0.195 Sum_probs=161.7
Q ss_pred CCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHhC
Q 007912 132 NFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVRC 211 (585)
Q Consensus 132 ~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~ 211 (585)
+|+.|.+.++.. ..+...+ ...+|++|++.++.+... ..-...+++|+.|+++++. .+.. +.. ...+
T Consensus 590 ~Lr~L~~~~~~l---~~lP~~f-~~~~L~~L~L~~s~l~~L-----~~~~~~l~~Lk~L~Ls~~~-~l~~--ip~-ls~l 656 (1153)
T PLN03210 590 KLRLLRWDKYPL---RCMPSNF-RPENLVKLQMQGSKLEKL-----WDGVHSLTGLRNIDLRGSK-NLKE--IPD-LSMA 656 (1153)
T ss_pred ccEEEEecCCCC---CCCCCcC-CccCCcEEECcCcccccc-----ccccccCCCCCEEECCCCC-CcCc--CCc-cccC
Confidence 477777665421 1111111 346777788777765432 1112346678888887542 1110 111 2346
Q ss_pred CCCceEEeCCCCChHHHHHHHhhCCCceEEcCccccCCCCchhhhhhhhhhhcccccccccCccccCcCchhhHhhcCCC
Q 007912 212 PNLRTLRLNRAVPLEKLAHLLRQAPQLVELGTGTYSADLRPDIFSNLAGAFSGCKELKSLSGFWDVVPAYLPAVYSVCSG 291 (585)
Q Consensus 212 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~ 291 (585)
++|++|++.+|..+..++..+..+++|+.|.+.++.. |+.+ +... .+++
T Consensus 657 ~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~-------------------L~~L-----------p~~i-~l~s 705 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN-------------------LEIL-----------PTGI-NLKS 705 (1153)
T ss_pred CcccEEEecCCCCccccchhhhccCCCCEEeCCCCCC-------------------cCcc-----------CCcC-CCCC
Confidence 7888888888877777777777778888877754421 1111 0000 2566
Q ss_pred CCEEEeeccc-CCchhHHHHHhcCCCCcEEecccccchhHHHHHHhcCCCCceEEeccCCCCCC-CCCCCcchHHHHHHH
Q 007912 292 LTTLNLSYAT-IQSPDLIKLVSQCPKLQCLWVLDYIEDSGLEALAATCKDLRELRVFPSEPFGD-EPNVSLTEQGLVLVS 369 (585)
Q Consensus 292 L~~L~L~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~l~~l~ 369 (585)
|+.|++++|. +.. +....++|+.|++.++.-. .+.... .+++|+.|.+..+....- .....+.. ...
T Consensus 706 L~~L~Lsgc~~L~~-----~p~~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~----~~~ 774 (1153)
T PLN03210 706 LYRLNLSGCSRLKS-----FPDISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTP----LMT 774 (1153)
T ss_pred CCEEeCCCCCCccc-----cccccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccch----hhh
Confidence 6667776664 211 1112345666666553110 011111 345666666652110000 00000000 011
Q ss_pred hCCCCCceehh-cccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCCCCCHHH
Q 007912 370 EGCPKLESVLY-FCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSGLLTDRV 448 (585)
Q Consensus 370 ~~~~~L~~L~~-~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 448 (585)
..+++|+.|.+ .|..+.. +..-...+++|+.|++.+|. .+...|. + ..+++|+.|+++++-.-
T Consensus 775 ~~~~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~-----~L~~LP~--~-----~~L~sL~~L~Ls~c~~L-- 838 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCI-----NLETLPT--G-----INLESLESLDLSGCSRL-- 838 (1153)
T ss_pred hccccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCC-----CcCeeCC--C-----CCccccCEEECCCCCcc--
Confidence 22456777743 3322221 12223457888888886542 2322111 1 14678888888874221
Q ss_pred HHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCC-CCChHHHHHHHHhcccCCEEEeeccc
Q 007912 449 FEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDC-PFGDKALLANAAKLETMRSLWMSSCS 518 (585)
Q Consensus 449 ~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~ 518 (585)
..+.....+|+.|++++|.++.... . ...+++|+.|++++| .+.... .....+++|+.+++++|.
T Consensus 839 -~~~p~~~~nL~~L~Ls~n~i~~iP~-s-i~~l~~L~~L~L~~C~~L~~l~--~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 839 -RTFPDISTNISDLNLSRTGIEEVPW-W-IEKFSNLSFLDMNGCNNLQRVS--LNISKLKHLETVDFSDCG 904 (1153)
T ss_pred -ccccccccccCEeECCCCCCccChH-H-HhcCCCCCEEECCCCCCcCccC--cccccccCCCeeecCCCc
Confidence 1122234678899999888765332 2 367889999999998 554422 234567888888998884
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.34 E-value=3.1e-14 Score=137.35 Aligned_cols=148 Identities=15% Similarity=0.053 Sum_probs=77.6
Q ss_pred CCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCCCCCHHHHHH
Q 007912 372 CPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSGLLTDRVFEY 451 (585)
Q Consensus 372 ~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 451 (585)
+.+|..++++|++++...-. .-..++|+.|+|++... +.. ..-...-.+|++|+++.+-- ..+..
T Consensus 221 l~NL~dvDlS~N~Lp~vPec--ly~l~~LrrLNLS~N~i------teL------~~~~~~W~~lEtLNlSrNQL-t~LP~ 285 (1255)
T KOG0444|consen 221 LHNLRDVDLSENNLPIVPEC--LYKLRNLRRLNLSGNKI------TEL------NMTEGEWENLETLNLSRNQL-TVLPD 285 (1255)
T ss_pred hhhhhhccccccCCCcchHH--HhhhhhhheeccCcCce------eee------eccHHHHhhhhhhccccchh-ccchH
Confidence 44555555565555422111 11346777777765422 100 00012224577777766211 11111
Q ss_pred HHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCC--ChHHHHHHHHhcccCCEEEeeccc-CCH-HHHHHH
Q 007912 452 IGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPF--GDKALLANAAKLETMRSLWMSSCS-VSF-EACKLL 527 (585)
Q Consensus 452 l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~--~~~~~~~~~~~l~~L~~L~l~~~~-i~~-~~~~~l 527 (585)
-.-.++.|+.|.+.+|+++=+|+..=+..+.+|+.+...+|.+ .+++ +..|++|+.|+++.|. ||- +++
T Consensus 286 avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEg----lcRC~kL~kL~L~~NrLiTLPeaI--- 358 (1255)
T KOG0444|consen 286 AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEG----LCRCVKLQKLKLDHNRLITLPEAI--- 358 (1255)
T ss_pred HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchh----hhhhHHHHHhcccccceeechhhh---
Confidence 1122455777777777766555543334456677777777743 3333 4477888888888886 332 222
Q ss_pred HhhCCCcEEEEecCC
Q 007912 528 GQKMPRLNVEVIDES 542 (585)
Q Consensus 528 ~~~~~~l~~~~~~~~ 542 (585)
.-+|.+.+..+.++
T Consensus 359 -HlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 359 -HLLPDLKVLDLREN 372 (1255)
T ss_pred -hhcCCcceeeccCC
Confidence 34677777766655
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.17 E-value=2.2e-10 Score=128.59 Aligned_cols=124 Identities=17% Similarity=0.155 Sum_probs=55.1
Q ss_pred CCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCC-CCCcccccccccCCCCC
Q 007912 107 WLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESD-VEDPSGNWLSKFPDTCT 185 (585)
Q Consensus 107 ~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~~~ 185 (585)
+|+.|.+.++.+.... .-. ...+|+.|++.++. +. .+..-...+++|+.|+++++. +... +. ...++
T Consensus 590 ~Lr~L~~~~~~l~~lP--~~f-~~~~L~~L~L~~s~-l~--~L~~~~~~l~~Lk~L~Ls~~~~l~~i-----p~-ls~l~ 657 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMP--SNF-RPENLVKLQMQGSK-LE--KLWDGVHSLTGLRNIDLRGSKNLKEI-----PD-LSMAT 657 (1153)
T ss_pred ccEEEEecCCCCCCCC--CcC-CccCCcEEECcCcc-cc--ccccccccCCCCCEEECCCCCCcCcC-----Cc-cccCC
Confidence 4666666554332210 000 22456666665542 21 111112345666666666553 2111 11 11244
Q ss_pred cccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHHHHHhhCCCceEEcCccc
Q 007912 186 SLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVELGTGTY 246 (585)
Q Consensus 186 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 246 (585)
+|+.|++++|. .. ..+..-+..+++|+.|++++|..+..++..+ .+++|+.|.+.++
T Consensus 658 ~Le~L~L~~c~-~L--~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 658 NLETLKLSDCS-SL--VELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred cccEEEecCCC-Cc--cccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence 66666666542 11 1112223445666666666665554444322 4555666655444
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.14 E-value=2.1e-12 Score=124.99 Aligned_cols=208 Identities=17% Similarity=0.104 Sum_probs=119.4
Q ss_pred CCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccccchhHHHHHHhcCCCCceEEeccCCCCCCCCCCCcchHHHHHH
Q 007912 289 CSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDYIEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSLTEQGLVLV 368 (585)
Q Consensus 289 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~~l 368 (585)
.+++-.|+|++|++.... ..++-++..|-.|+++.+--+.--..+ ..+..|+.|.+++ +.+....+..+
T Consensus 125 AKn~iVLNLS~N~IetIP-n~lfinLtDLLfLDLS~NrLe~LPPQ~-RRL~~LqtL~Ls~---------NPL~hfQLrQL 193 (1255)
T KOG0444|consen 125 AKNSIVLNLSYNNIETIP-NSLFINLTDLLFLDLSNNRLEMLPPQI-RRLSMLQTLKLSN---------NPLNHFQLRQL 193 (1255)
T ss_pred hcCcEEEEcccCccccCC-chHHHhhHhHhhhccccchhhhcCHHH-HHHhhhhhhhcCC---------ChhhHHHHhcC
Confidence 345556666666532211 122223444555555543111111111 2345677777763 33433333333
Q ss_pred HhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHH
Q 007912 369 SEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDR 447 (585)
Q Consensus 369 ~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~ 447 (585)
.. +.+|+.|..+.++-|-..+..-...+.+|..++++.. +++ .+...+-.+++|+.|+|++ .++.-
T Consensus 194 Ps-mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N------~Lp------~vPecly~l~~LrrLNLS~N~iteL 260 (1255)
T KOG0444|consen 194 PS-MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN------NLP------IVPECLYKLRNLRRLNLSGNKITEL 260 (1255)
T ss_pred cc-chhhhhhhcccccchhhcCCCchhhhhhhhhcccccc------CCC------cchHHHhhhhhhheeccCcCceeee
Confidence 22 3344444444444443333333334567888888743 333 2233456678999999988 44433
Q ss_pred HHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccC--CHHHH
Q 007912 448 VFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSV--SFEAC 524 (585)
Q Consensus 448 ~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i--~~~~~ 524 (585)
.+.. ....+|++|+++.|+++.-.- + +-.+++|++|.+.+|+++-+++.+.+..+.+|+++...+|++ ..+|+
T Consensus 261 ~~~~--~~W~~lEtLNlSrNQLt~LP~-a-vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEgl 335 (1255)
T KOG0444|consen 261 NMTE--GEWENLETLNLSRNQLTVLPD-A-VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGL 335 (1255)
T ss_pred eccH--HHHhhhhhhccccchhccchH-H-HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhh
Confidence 2221 124579999999999765322 1 245689999999999999999888999999999999999973 44443
No 19
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1e-11 Score=115.28 Aligned_cols=137 Identities=18% Similarity=0.104 Sum_probs=66.3
Q ss_pred CCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHH
Q 007912 372 CPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFE 450 (585)
Q Consensus 372 ~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~ 450 (585)
+++|+.|.+..+.++...+..+...||+|+.|.+.+.....-...+ ...+..|+.|+|++ .+-+....
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-----------~~i~~~L~~LdLs~N~li~~~~~ 264 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-----------TKILQTLQELDLSNNNLIDFDQG 264 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-----------hhhhhHHhhccccCCcccccccc
Confidence 4455555433345555555555555666666666543110000000 11123466666655 22222211
Q ss_pred HHHhhccccceeeccccCCCHHHHHH-----HHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccC
Q 007912 451 YIGTYAKKLEMLSVAFAGESDLGLHH-----VLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSV 519 (585)
Q Consensus 451 ~l~~~~~~L~~L~l~~~~i~~~~~~~-----l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 519 (585)
.....+|.|+.|.++.|++++..... ....+++|++|++..|++.+-....-+..+++|+.|.+..+.+
T Consensus 265 ~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 22233566666666666654333221 1234677777777777665554333445566666666655554
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.09 E-value=6e-12 Score=127.45 Aligned_cols=99 Identities=17% Similarity=0.147 Sum_probs=61.4
Q ss_pred hHHHHhhhCCCCcEEecCCC----CCHHHHHHHHhhccccceeeccccCCCHHHHHH--------H------------Hh
Q 007912 424 GFGAIVQHCKDLRRLSLSGL----LTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHH--------V------------LS 479 (585)
Q Consensus 424 ~~~~~~~~~~~L~~L~l~~~----~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~--------l------------~~ 479 (585)
.....+.+++.||.|+|+++ +.+..+ ..++.|+.|.|++|.++...... + ..
T Consensus 374 ~c~p~l~~~~hLKVLhLsyNrL~~fpas~~----~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~ 449 (1081)
T KOG0618|consen 374 SCFPVLVNFKHLKVLHLSYNRLNSFPASKL----RKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELA 449 (1081)
T ss_pred cchhhhccccceeeeeecccccccCCHHHH----hchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhh
Confidence 33445667788999999873 333333 33566899999999754322110 0 01
Q ss_pred cCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeeccc---CCHHHHHHH
Q 007912 480 GCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCS---VSFEACKLL 527 (585)
Q Consensus 480 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---i~~~~~~~l 527 (585)
.++.|+.+|++.|+++...+..... .|+|++|+++||. +....++.+
T Consensus 450 ~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d~~~l~~l 499 (1081)
T KOG0618|consen 450 QLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFDHKTLKVL 499 (1081)
T ss_pred hcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcccccchhhhHHh
Confidence 2577888888888877766543322 2689999999885 344444433
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.03 E-value=1.9e-10 Score=116.87 Aligned_cols=348 Identities=18% Similarity=0.152 Sum_probs=177.6
Q ss_pred CcEEEecccccChHHHHHHHHhCCCCcE-EeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCCc
Q 007912 108 LEELKLKRMVVTDESLELIAKSFKNFKV-LVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCTS 186 (585)
Q Consensus 108 L~~L~l~~~~~~~~~l~~l~~~~~~L~~-L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~ 186 (585)
++.+++..+.+.......+ .++++ |+|+... +. ......+++|+.|....+.+.. +.-..++
T Consensus 158 ik~~~l~~n~l~~~~~~~i----~~l~~~ldLr~N~-~~----~~dls~~~~l~~l~c~rn~ls~--------l~~~g~~ 220 (1081)
T KOG0618|consen 158 IKKLDLRLNVLGGSFLIDI----YNLTHQLDLRYNE-ME----VLDLSNLANLEVLHCERNQLSE--------LEISGPS 220 (1081)
T ss_pred chhhhhhhhhcccchhcch----hhhheeeecccch-hh----hhhhhhccchhhhhhhhcccce--------EEecCcc
Confidence 6666666665554433222 23444 7776532 11 1222356677777666554322 2222346
Q ss_pred ccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHHHHHhhCCCceEEcCccccCCCCchhhhhhhhhhhccc
Q 007912 187 LVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVELGTGTYSADLRPDIFSNLAGAFSGCK 266 (585)
Q Consensus 187 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~ 266 (585)
|+.|+.+.+.....+.. ..-.+|+++++++.. +..++..+..+.+|+.+........ .+........
T Consensus 221 l~~L~a~~n~l~~~~~~-----p~p~nl~~~dis~n~-l~~lp~wi~~~~nle~l~~n~N~l~-------~lp~ri~~~~ 287 (1081)
T KOG0618|consen 221 LTALYADHNPLTTLDVH-----PVPLNLQYLDISHNN-LSNLPEWIGACANLEALNANHNRLV-------ALPLRISRIT 287 (1081)
T ss_pred hheeeeccCcceeeccc-----cccccceeeecchhh-hhcchHHHHhcccceEecccchhHH-------hhHHHHhhhh
Confidence 66666665521100000 011356666666543 4555566666777776665443221 1222222223
Q ss_pred ccccccCccccCcCchhhHhhcCCCCCEEEeecccCCc--hhHHHHHhcCCCCcEEecccc-cchhHHHHHHhcCCCCce
Q 007912 267 ELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYATIQS--PDLIKLVSQCPKLQCLWVLDY-IEDSGLEALAATCKDLRE 343 (585)
Q Consensus 267 ~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~ 343 (585)
+|+.|. .....-+.++.+....+.|++|+|..|.+.. +.+..+.. ..|+.|..+.. +... ...-....+.|+.
T Consensus 288 ~L~~l~-~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~--~~l~~ln~s~n~l~~l-p~~~e~~~~~Lq~ 363 (1081)
T KOG0618|consen 288 SLVSLS-AAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLN--ASLNTLNVSSNKLSTL-PSYEENNHAALQE 363 (1081)
T ss_pred hHHHHH-hhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhh--HHHHHHhhhhcccccc-ccccchhhHHHHH
Confidence 333332 1111122333444457889999999887322 11111110 01222222211 0000 0000013344666
Q ss_pred EEeccCCCCCCCCCCCcchHHHHHHHhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchh
Q 007912 344 LRVFPSEPFGDEPNVSLTEQGLVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDV 423 (585)
Q Consensus 344 L~l~~~~~~~~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 423 (585)
|.+. .+.+++..+..+. ++++|+.|++..++++...-..+. .++.|++|.|+|... +
T Consensus 364 Lyla---------nN~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~~-kle~LeeL~LSGNkL------~------ 420 (1081)
T KOG0618|consen 364 LYLA---------NNHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASKLR-KLEELEELNLSGNKL------T------ 420 (1081)
T ss_pred HHHh---------cCcccccchhhhc-cccceeeeeecccccccCCHHHHh-chHHhHHHhcccchh------h------
Confidence 6665 2567776665444 488888887665655533333333 467788888887532 1
Q ss_pred hHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCC--CChHHHH
Q 007912 424 GFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCP--FGDKALL 500 (585)
Q Consensus 424 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~--~~~~~~~ 500 (585)
.+..-+..|+.|++|...+ .+. .+..+ ..++.|+.++++.|.++...+.+.+.. |+|++||+++|. ..|..
T Consensus 421 ~Lp~tva~~~~L~tL~ahsN~l~--~fPe~-~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~-- 494 (1081)
T KOG0618|consen 421 TLPDTVANLGRLHTLRAHSNQLL--SFPEL-AQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHK-- 494 (1081)
T ss_pred hhhHHHHhhhhhHHHhhcCCcee--echhh-hhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchh--
Confidence 2333356677888888766 221 12222 346889999999999988888775333 899999999993 22332
Q ss_pred HHHHhcccCCEEEeecccC
Q 007912 501 ANAAKLETMRSLWMSSCSV 519 (585)
Q Consensus 501 ~~~~~l~~L~~L~l~~~~i 519 (585)
.+..+..+...++.-++.
T Consensus 495 -~l~~l~~l~~~~i~~~~~ 512 (1081)
T KOG0618|consen 495 -TLKVLKSLSQMDITLNNT 512 (1081)
T ss_pred -hhHHhhhhhheecccCCC
Confidence 333444555555544433
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1e-10 Score=108.88 Aligned_cols=190 Identities=13% Similarity=0.036 Sum_probs=119.7
Q ss_pred hcCCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccccc--hhHHHHHHhcCCCCceEEeccCCCCCCCCCCCcchHH
Q 007912 287 SVCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDYIE--DSGLEALAATCKDLRELRVFPSEPFGDEPNVSLTEQG 364 (585)
Q Consensus 287 ~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 364 (585)
+.+.+|+.+.|.++.+...+.......||+++.|+++.++- -..+..++..+|+|+.|+++.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~---------------- 181 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSS---------------- 181 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccc----------------
Confidence 34556666666666554444434555666666666666421 233445555666666666651
Q ss_pred HHHHHhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCCCC
Q 007912 365 LVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSGLL 444 (585)
Q Consensus 365 l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 444 (585)
+.+....-......++.|+.|.+++|+. + -..+..++..+|+|+.|+|.++-
T Consensus 182 ------------------Nrl~~~~~s~~~~~l~~lK~L~l~~CGl------s----~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 182 ------------------NRLSNFISSNTTLLLSHLKQLVLNSCGL------S----WKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred ------------------ccccCCccccchhhhhhhheEEeccCCC------C----HHHHHHHHHhCCcHHHhhhhccc
Confidence 1111000000011468899999998854 3 56788889999999999997741
Q ss_pred CHHHHHHH-HhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHH-----HHHHhcccCCEEEeeccc
Q 007912 445 TDRVFEYI-GTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALL-----ANAAKLETMRSLWMSSCS 518 (585)
Q Consensus 445 ~~~~~~~l-~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~l~~L~~L~l~~~~ 518 (585)
+...... ...+..|++|+|++|++-+.........+|.|+.|+++.|.+++.... .....+|+|+.|++..|+
T Consensus 234 -~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 234 -IILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred -ccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 1111111 123567999999999965444434447899999999999987665433 235778999999999999
Q ss_pred CCH
Q 007912 519 VSF 521 (585)
Q Consensus 519 i~~ 521 (585)
|.+
T Consensus 313 I~~ 315 (505)
T KOG3207|consen 313 IRD 315 (505)
T ss_pred ccc
Confidence 843
No 23
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.91 E-value=1.1e-09 Score=71.32 Aligned_cols=35 Identities=40% Similarity=0.840 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHhccCChHHHHHHHHHhHHHHHhh
Q 007912 7 YSSLPEDVLEHVFSFVQSDKDRNVISLVCKSWYEIE 42 (585)
Q Consensus 7 i~~LP~ell~~If~~L~~~~~~~~~~~Vcr~W~~~~ 42 (585)
|..||+|++.+||+||+ .+|+.++++|||+|++++
T Consensus 1 i~~LP~Eil~~If~~L~-~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLD-PRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS--HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHH
Confidence 57899999999999998 889999999999999997
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.86 E-value=1.8e-09 Score=112.72 Aligned_cols=64 Identities=16% Similarity=0.088 Sum_probs=33.5
Q ss_pred cccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCHHHHHHH
Q 007912 457 KKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFEACKLL 527 (585)
Q Consensus 457 ~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l 527 (585)
++|+.|++++|.++... . ...+|+.|++++|+++. +..-+..+++|+.|++++|+++......+
T Consensus 402 s~L~~LdLS~N~LssIP--~---l~~~L~~L~Ls~NqLt~--LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 402 SELKELMVSGNRLTSLP--M---LPSGLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred cCCCEEEccCCcCCCCC--c---chhhhhhhhhccCcccc--cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 34666666666654311 1 12345666666665542 22223456666666666666665544444
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.79 E-value=1.2e-08 Score=106.64 Aligned_cols=163 Identities=20% Similarity=0.192 Sum_probs=91.8
Q ss_pred CCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc-cchhHHHHHHhcCCCCceEEeccCCCCCCCCCCCcchHHHHH
Q 007912 289 CSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY-IEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSLTEQGLVL 367 (585)
Q Consensus 289 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~~ 367 (585)
.++|+.|++++|.+... .. ..+.|+.|.+.++ ++. +....++|+.|++++ +.++.
T Consensus 301 p~~L~~LdLS~N~L~~L--p~---lp~~L~~L~Ls~N~L~~-----LP~lp~~Lq~LdLS~---------N~Ls~----- 356 (788)
T PRK15387 301 PPGLQELSVSDNQLASL--PA---LPSELCKLWAYNNQLTS-----LPTLPSGLQELSVSD---------NQLAS----- 356 (788)
T ss_pred ccccceeECCCCccccC--CC---CcccccccccccCcccc-----ccccccccceEecCC---------CccCC-----
Confidence 35677777777664321 11 1234666666554 211 111224677888763 23332
Q ss_pred HHhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCH
Q 007912 368 VSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTD 446 (585)
Q Consensus 368 l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~ 446 (585)
+....++|+.|....+.++. +. ...++|+.|+++++... .+. ...++|+.|++++ .++.
T Consensus 357 LP~lp~~L~~L~Ls~N~L~~--LP---~l~~~L~~LdLs~N~Lt---~LP------------~l~s~L~~LdLS~N~Lss 416 (788)
T PRK15387 357 LPTLPSELYKLWAYNNRLTS--LP---ALPSGLKELIVSGNRLT---SLP------------VLPSELKELMVSGNRLTS 416 (788)
T ss_pred CCCCCcccceehhhcccccc--Cc---ccccccceEEecCCccc---CCC------------CcccCCCEEEccCCcCCC
Confidence 11123456666554455542 11 12357888888765331 111 1125799999988 3331
Q ss_pred HHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHH
Q 007912 447 RVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLAN 502 (585)
Q Consensus 447 ~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 502 (585)
+. ..+.+|+.|++++|+++... ..+ ..+++|+.|++++|++++..+..+
T Consensus 417 --IP---~l~~~L~~L~Ls~NqLt~LP-~sl-~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 417 --LP---MLPSGLLSLSVYRNQLTRLP-ESL-IHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred --CC---cchhhhhhhhhccCcccccC-hHH-hhccCCCeEECCCCCCCchHHHHH
Confidence 11 22456899999999987432 223 568999999999999987765533
No 26
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.78 E-value=1.7e-10 Score=106.18 Aligned_cols=111 Identities=13% Similarity=0.048 Sum_probs=68.8
Q ss_pred HhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCCCCCHHHHHHHHhhccccceeeccccCCCHHH
Q 007912 394 AKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAGESDLG 473 (585)
Q Consensus 394 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~ 473 (585)
...+++|..|++++.- +.. +..-.+.+..|+.|+++.+-. ..+.........|+.+-.+++++....
T Consensus 431 l~~l~kLt~L~L~NN~------Ln~------LP~e~~~lv~Lq~LnlS~NrF-r~lP~~~y~lq~lEtllas~nqi~~vd 497 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNL------LND------LPEEMGSLVRLQTLNLSFNRF-RMLPECLYELQTLETLLASNNQIGSVD 497 (565)
T ss_pred HHhhhcceeeecccch------hhh------cchhhhhhhhhheeccccccc-ccchHHHhhHHHHHHHHhccccccccC
Confidence 3457888888887531 111 111133445688888877411 112222222344666667777765444
Q ss_pred HHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCC
Q 007912 474 LHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVS 520 (585)
Q Consensus 474 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 520 (585)
...+ .++.+|..||+.+|.+.. +...+.++.+|++|.++||++.
T Consensus 498 ~~~l-~nm~nL~tLDL~nNdlq~--IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 498 PSGL-KNMRNLTTLDLQNNDLQQ--IPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hHHh-hhhhhcceeccCCCchhh--CChhhccccceeEEEecCCccC
Confidence 4443 567899999999995433 2346789999999999999764
No 27
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.64 E-value=7.7e-07 Score=78.19 Aligned_cols=100 Identities=18% Similarity=0.193 Sum_probs=70.2
Q ss_pred hhHHHHHHccCCCCcEEEecccccChHHHHHHHHhCCC---CcEEeecccC--CCCHH------HHHHHHhcCCCCcEEE
Q 007912 95 YPWIRAMAGGYPWLEELKLKRMVVTDESLELIAKSFKN---FKVLVLSSCE--GFSTH------GLAAIAADCKNLKELD 163 (585)
Q Consensus 95 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~---L~~L~L~~~~--~~~~~------~l~~l~~~~~~L~~L~ 163 (585)
.+++..+.. ...++.++||+|.+.....++++....+ |+..+++... ...+. .+....-.||+|+..+
T Consensus 20 k~v~eel~~-~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~ 98 (388)
T COG5238 20 KGVVEELEM-MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVD 98 (388)
T ss_pred hHHHHHHHh-hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeee
Confidence 444555554 7889999999999999999888866555 4444444321 11111 1122234899999999
Q ss_pred cccCCCCCcccccccccCCCCCcccEEEeccc
Q 007912 164 LWESDVEDPSGNWLSKFPDTCTSLVSLNIACL 195 (585)
Q Consensus 164 l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 195 (585)
++.|.+.......+..+..+...|++|.++++
T Consensus 99 LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 99 LSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred ccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 99998887776677777777788999999877
No 28
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.50 E-value=1.1e-06 Score=77.17 Aligned_cols=217 Identities=15% Similarity=0.140 Sum_probs=124.6
Q ss_pred cCCCCCEEEeecccCCchhHHHHHhcC---CCCcEEecccccc----hh---HH----HHHHhcCCCCceEEeccCCCCC
Q 007912 288 VCSGLTTLNLSYATIQSPDLIKLVSQC---PKLQCLWVLDYIE----DS---GL----EALAATCKDLRELRVFPSEPFG 353 (585)
Q Consensus 288 ~~~~L~~L~L~~~~~~~~~l~~l~~~~---~~L~~L~l~~~~~----~~---~~----~~l~~~~~~L~~L~l~~~~~~~ 353 (585)
....++.++|++|.+..++...++... .+|+..++++.++ +. .+ .++. .||+|+..++++-.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLl-kcp~l~~v~LSDNA--- 103 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALL-KCPRLQKVDLSDNA--- 103 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHh-cCCcceeeeccccc---
Confidence 367899999999998888877776555 4555556655322 21 22 2232 79999999998510
Q ss_pred CCCCCCcchHHHHHHHhCCCCCceehhcccCCcHHHHH-------HHH-----hhCCCCceeeeeecCCCCCCCCCCCcc
Q 007912 354 DEPNVSLTEQGLVLVSEGCPKLESVLYFCRRMSNDALV-------TIA-----KNRPSMIRFRLCIIDPQTPDYLTLEPL 421 (585)
Q Consensus 354 ~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~~~~~~~~-------~l~-----~~~~~L~~L~L~~~~~~~~~~~~~~~~ 421 (585)
...-....+..+..+...|++|.++.+.+...+-. .++ ..-|.|+......... .+.+
T Consensus 104 ---fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl---engs---- 173 (388)
T COG5238 104 ---FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL---ENGS---- 173 (388)
T ss_pred ---cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh---ccCc----
Confidence 11112334555566678888886655555432222 221 2236677665432211 1111
Q ss_pred hhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHH----hhccccceeeccccCCCHHHHHHHHhc---CCCCCeEEeeCCC
Q 007912 422 DVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIG----TYAKKLEMLSVAFAGESDLGLHHVLSG---CDSLRKLEIMDCP 493 (585)
Q Consensus 422 ~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~----~~~~~L~~L~l~~~~i~~~~~~~l~~~---~~~L~~L~l~~~~ 493 (585)
..-....++.-.+|+.+.+.. .|...++..+. ..+++|+.|+|..|.+|-.+-.+++.. -+.|++|.+.+|-
T Consensus 174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 122233344335777777754 55555555443 236777777777777776666655443 2456777777776
Q ss_pred CChHHHHHHHHh-----cccCCEEEeeccc
Q 007912 494 FGDKALLANAAK-----LETMRSLWMSSCS 518 (585)
Q Consensus 494 ~~~~~~~~~~~~-----l~~L~~L~l~~~~ 518 (585)
++..+..+++.. .|+|..|...+|-
T Consensus 254 ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 254 LSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred hccccHHHHHHHhhhhcCCCccccccchhh
Confidence 666665555433 4566777766664
No 29
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.46 E-value=3.9e-08 Score=64.49 Aligned_cols=37 Identities=32% Similarity=0.659 Sum_probs=31.4
Q ss_pred CCCCCCHHHHHHHHhccCChHHHHHHHHHhHHHHHhhc
Q 007912 6 SYSSLPEDVLEHVFSFVQSDKDRNVISLVCKSWYEIER 43 (585)
Q Consensus 6 ~i~~LP~ell~~If~~L~~~~~~~~~~~Vcr~W~~~~~ 43 (585)
++.+||+|++.+||++|+ .+++.++++|||+|++++.
T Consensus 2 ~~~~LP~~il~~Il~~l~-~~~~~~l~~vsk~~~~~~~ 38 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLD-PKDLLRLSLVSKRWRSLVD 38 (48)
T ss_dssp HHHHS-HHHHHHHHHTS--HHHHHHHCTT-HHHHHHHT
T ss_pred CHHHCCHHHHHHHHHHCc-HHHHHHHHHHhhHHHHHHc
Confidence 567899999999999999 8899999999999999973
No 30
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.41 E-value=7.2e-07 Score=93.13 Aligned_cols=135 Identities=20% Similarity=0.147 Sum_probs=86.2
Q ss_pred HHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccc
Q 007912 388 DALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAF 466 (585)
Q Consensus 388 ~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~ 466 (585)
.....+...+|.|++|.+.+... . ...+..++.++|+|..||+++ ++++- .....+++|++|.+.+
T Consensus 138 ~W~~kig~~LPsL~sL~i~~~~~------~----~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 138 GWPKKIGTMLPSLRSLVISGRQF------D----NDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQVLSMRN 204 (699)
T ss_pred cHHHHHhhhCcccceEEecCcee------c----chhHHHHhhccCccceeecCCCCccCc---HHHhccccHHHHhccC
Confidence 33445555667777777765422 1 233666777777777777777 44443 2223467778887777
Q ss_pred cCCCH-HHHHHHHhcCCCCCeEEeeCCCCChHH--HHH---HHHhcccCCEEEeecccCCHHHHHHHHhhCCCcEE
Q 007912 467 AGESD-LGLHHVLSGCDSLRKLEIMDCPFGDKA--LLA---NAAKLETMRSLWMSSCSVSFEACKLLGQKMPRLNV 536 (585)
Q Consensus 467 ~~i~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~--~~~---~~~~l~~L~~L~l~~~~i~~~~~~~l~~~~~~l~~ 536 (585)
-.+.. ..+..+ =++++|+.||+|.-...+.. +.. .-..+|+|+.|+.+++.++.+.++.+.+..|++..
T Consensus 205 Le~e~~~~l~~L-F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 205 LEFESYQDLIDL-FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred CCCCchhhHHHH-hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 77643 445554 45788888888887433322 221 12457888888888888888888888888887753
No 31
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.39 E-value=8.7e-07 Score=92.51 Aligned_cols=159 Identities=15% Similarity=0.187 Sum_probs=118.9
Q ss_pred cCCCCceEEeccCCCCCCCCCCCcchHHHHHHHhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCC
Q 007912 337 TCKDLRELRVFPSEPFGDEPNVSLTEQGLVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYL 416 (585)
Q Consensus 337 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~ 416 (585)
.-.+|++|+++ |...++..-...+...+|.|++|...+..+....+..+..++|+|..|++++++.
T Consensus 120 sr~nL~~LdI~--------G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI------ 185 (699)
T KOG3665|consen 120 SRQNLQHLDIS--------GSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI------ 185 (699)
T ss_pred HHHhhhhcCcc--------ccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc------
Confidence 34579999999 4455555556667778999999987777777777888999999999999997643
Q ss_pred CCCcchhhHHHHhhhCCCCcEEecCC-CCCH-HHHHHHHhhccccceeeccccCCCHHH--HHHHHh---cCCCCCeEEe
Q 007912 417 TLEPLDVGFGAIVQHCKDLRRLSLSG-LLTD-RVFEYIGTYAKKLEMLSVAFAGESDLG--LHHVLS---GCDSLRKLEI 489 (585)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~-~~~~~l~~~~~~L~~L~l~~~~i~~~~--~~~l~~---~~~~L~~L~l 489 (585)
+. + ..++++++|+.|.+.+ .+.. ..+..+.. +++|++||++.-...+.. +...++ .+|+|+.||.
T Consensus 186 ~n------l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDc 257 (699)
T KOG3665|consen 186 SN------L-SGISRLKNLQVLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDC 257 (699)
T ss_pred cC------c-HHHhccccHHHHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEec
Confidence 21 1 2356788999999988 4433 44455544 688999999987632222 222212 3899999999
Q ss_pred eCCCCChHHHHHHHHhcccCCEEEeecc
Q 007912 490 MDCPFGDKALLANAAKLETMRSLWMSSC 517 (585)
Q Consensus 490 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 517 (585)
++..++.+.+..+...-|+|+.+.+-+|
T Consensus 258 SgTdi~~~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 258 SGTDINEEILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred CCcchhHHHHHHHHHhCccHhhhhhhhh
Confidence 9999999999999999999988876654
No 32
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.37 E-value=6.1e-07 Score=56.53 Aligned_cols=32 Identities=28% Similarity=0.552 Sum_probs=30.7
Q ss_pred CCHHHHHHHHhccCChHHHHHHHHHhHHHHHhh
Q 007912 10 LPEDVLEHVFSFVQSDKDRNVISLVCKSWYEIE 42 (585)
Q Consensus 10 LP~ell~~If~~L~~~~~~~~~~~Vcr~W~~~~ 42 (585)
||+|++..||.+|+ .+|+.+++.|||+|+.++
T Consensus 1 lP~~ll~~I~~~l~-~~d~~~~~~vc~~~~~~~ 32 (41)
T smart00256 1 LPDEILEEILSKLP-PKDLLRLRKVSRRWRSLI 32 (41)
T ss_pred CCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHh
Confidence 79999999999999 789999999999999997
No 33
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=6.7e-07 Score=79.65 Aligned_cols=85 Identities=14% Similarity=0.152 Sum_probs=48.6
Q ss_pred HhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHH-HHHHHhcCCCCCeEEeeCCCCChHH-----HH
Q 007912 428 IVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLG-LHHVLSGCDSLRKLEIMDCPFGDKA-----LL 500 (585)
Q Consensus 428 ~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~-~~~l~~~~~~L~~L~l~~~~~~~~~-----~~ 500 (585)
+...+|++..+-+.. -+.+..-..-....|.+-.|.|+.++|.+.. +.++ .++++|..|.++.+++.+.- ..
T Consensus 194 l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~L-n~f~~l~dlRv~~~Pl~d~l~~~err~ 272 (418)
T KOG2982|consen 194 LSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDAL-NGFPQLVDLRVSENPLSDPLRGGERRF 272 (418)
T ss_pred HHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHH-cCCchhheeeccCCcccccccCCcceE
Confidence 445566666666654 3333333333344566667777777775543 3443 67778888877777665432 11
Q ss_pred HHHHhcccCCEEE
Q 007912 501 ANAAKLETMRSLW 513 (585)
Q Consensus 501 ~~~~~l~~L~~L~ 513 (585)
-+++.+++++.|+
T Consensus 273 llIaRL~~v~vLN 285 (418)
T KOG2982|consen 273 LLIARLTKVQVLN 285 (418)
T ss_pred EEEeeccceEEec
Confidence 1335566666665
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.24 E-value=2.5e-07 Score=78.75 Aligned_cols=103 Identities=20% Similarity=0.197 Sum_probs=43.7
Q ss_pred hCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccC
Q 007912 431 HCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETM 509 (585)
Q Consensus 431 ~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 509 (585)
.+.+|+.|++++ .++. +..+ ..++.|++|++++|.|++.+- .+...+|+|++|++++|++.+..-..-++.+|+|
T Consensus 40 ~l~~L~~L~Ls~N~I~~--l~~l-~~L~~L~~L~L~~N~I~~i~~-~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L 115 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITK--LEGL-PGLPRLKTLDLSNNRISSISE-GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKL 115 (175)
T ss_dssp T-TT--EEE-TTS--S----TT-----TT--EEE--SS---S-CH-HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT-
T ss_pred hhcCCCEEECCCCCCcc--ccCc-cChhhhhhcccCCCCCCcccc-chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCc
Confidence 456788888877 3332 2222 235778889999888876432 2224578899999998877654333355678899
Q ss_pred CEEEeecccCCHHH--HHHHHhhCCCcEEE
Q 007912 510 RSLWMSSCSVSFEA--CKLLGQKMPRLNVE 537 (585)
Q Consensus 510 ~~L~l~~~~i~~~~--~~~l~~~~~~l~~~ 537 (585)
+.|++.+|+++... ...+...+|.+++.
T Consensus 116 ~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~L 145 (175)
T PF14580_consen 116 RVLSLEGNPVCEKKNYRLFVIYKLPSLKVL 145 (175)
T ss_dssp -EEE-TT-GGGGSTTHHHHHHHH-TT-SEE
T ss_pred ceeeccCCcccchhhHHHHHHHHcChhhee
Confidence 99999999875422 33345578886653
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.23 E-value=2.5e-07 Score=78.75 Aligned_cols=105 Identities=23% Similarity=0.191 Sum_probs=48.1
Q ss_pred hCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHH-
Q 007912 396 NRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLG- 473 (585)
Q Consensus 396 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~- 473 (585)
.+.+|+.|+++++.... + ++ +..+++|+.|++++ .+++.+ ..+...+|+|++|.+++|.|.+..
T Consensus 40 ~l~~L~~L~Ls~N~I~~---l------~~----l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~ 105 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITK---L------EG----LPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNE 105 (175)
T ss_dssp T-TT--EEE-TTS--S-----------TT--------TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCC
T ss_pred hhcCCCEEECCCCCCcc---c------cC----ccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHH
Confidence 35678888887654311 1 11 34568899999987 444432 233345789999999999975533
Q ss_pred HHHHHhcCCCCCeEEeeCCCCChHHH--HHHHHhcccCCEEEee
Q 007912 474 LHHVLSGCDSLRKLEIMDCPFGDKAL--LANAAKLETMRSLWMS 515 (585)
Q Consensus 474 ~~~l~~~~~~L~~L~l~~~~~~~~~~--~~~~~~l~~L~~L~l~ 515 (585)
+..+ +.+++|+.|++.+|++++..- ..++..+|+|+.|+-.
T Consensus 106 l~~L-~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 106 LEPL-SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp CGGG-GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred hHHH-HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 4444 679999999999998876542 2366889999999733
No 36
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=4.5e-06 Score=74.55 Aligned_cols=109 Identities=18% Similarity=0.206 Sum_probs=75.6
Q ss_pred CcEEEecccccCh-HHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCCc
Q 007912 108 LEELKLKRMVVTD-ESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCTS 186 (585)
Q Consensus 108 L~~L~l~~~~~~~-~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~ 186 (585)
++-|.+.++.+.. .....+...+..+++++|.+..--.-..+.++..++|.|+.|+++.|++... +..++....+
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~----I~~lp~p~~n 122 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD----IKSLPLPLKN 122 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc----cccCcccccc
Confidence 4455566665543 3355677778889999998753323356778888999999999998876543 2333323458
Q ss_pred ccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCC
Q 007912 187 LVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRA 222 (585)
Q Consensus 187 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 222 (585)
|+.|.+.++ ..+...........|.++.|+++.+
T Consensus 123 l~~lVLNgT--~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 123 LRVLVLNGT--GLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred eEEEEEcCC--CCChhhhhhhhhcchhhhhhhhccc
Confidence 899988888 5676777777777788888877654
No 37
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.15 E-value=1.5e-05 Score=84.37 Aligned_cols=88 Identities=13% Similarity=0.066 Sum_probs=58.6
Q ss_pred CCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCCh--HHHHHHHHhcccC
Q 007912 433 KDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGD--KALLANAAKLETM 509 (585)
Q Consensus 433 ~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~--~~~~~~~~~l~~L 509 (585)
++|+.|++++ .++. +.. ...++|+.|+|++|.++..... + ...|+.|++++|+++. ..+......++++
T Consensus 346 ~sL~~L~Ls~N~L~~--LP~--~lp~~L~~LdLs~N~Lt~LP~~-l---~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l 417 (754)
T PRK15370 346 PELQVLDVSKNQITV--LPE--TLPPTITTLDVSRNALTNLPEN-L---PAALQIMQASRNNLVRLPESLPHFRGEGPQP 417 (754)
T ss_pred CcccEEECCCCCCCc--CCh--hhcCCcCEEECCCCcCCCCCHh-H---HHHHHHHhhccCCcccCchhHHHHhhcCCCc
Confidence 5788888877 3331 111 1235789999999887643222 2 1368888999997653 3344455667888
Q ss_pred CEEEeecccCCHHHHHHHH
Q 007912 510 RSLWMSSCSVSFEACKLLG 528 (585)
Q Consensus 510 ~~L~l~~~~i~~~~~~~l~ 528 (585)
..|++.+|+++...++.+.
T Consensus 418 ~~L~L~~Npls~~tl~~L~ 436 (754)
T PRK15370 418 TRIIVEYNPFSERTIQNMQ 436 (754)
T ss_pred cEEEeeCCCccHHHHHHHH
Confidence 9999999998877776653
No 38
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.05 E-value=1.6e-06 Score=80.35 Aligned_cols=67 Identities=10% Similarity=0.047 Sum_probs=43.9
Q ss_pred HhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCH
Q 007912 453 GTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSF 521 (585)
Q Consensus 453 ~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~ 521 (585)
...+++|+.|++++|.|+...-.++ .+...+++|.+..|++....- .++.++..|+.|++.+|+||.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aF-e~~a~l~eL~L~~N~l~~v~~-~~f~~ls~L~tL~L~~N~it~ 336 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAF-EGAAELQELYLTRNKLEFVSS-GMFQGLSGLKTLSLYDNQITT 336 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhh-cchhhhhhhhcCcchHHHHHH-HhhhccccceeeeecCCeeEE
Confidence 3446778888888887766555554 566777777777775543321 255677777777777777644
No 39
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.96 E-value=1.2e-06 Score=81.12 Aligned_cols=89 Identities=19% Similarity=0.115 Sum_probs=62.8
Q ss_pred HHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHh
Q 007912 427 AIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAK 505 (585)
Q Consensus 427 ~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 505 (585)
.-+..+|+|++|+|++ .++...-..+ .....+++|.|..|++....-..+ .++..|+.|++++|+|+-.+.. .+..
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aF-e~~a~l~eL~L~~N~l~~v~~~~f-~~ls~L~tL~L~~N~it~~~~~-aF~~ 344 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAF-EGAAELQELYLTRNKLEFVSSGMF-QGLSGLKTLSLYDNQITTVAPG-AFQT 344 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhh-cchhhhhhhhcCcchHHHHHHHhh-hccccceeeeecCCeeEEEecc-cccc
Confidence 3477889999999988 4444333333 334568999999998755554444 7789999999999987765433 4456
Q ss_pred cccCCEEEeeccc
Q 007912 506 LETMRSLWMSSCS 518 (585)
Q Consensus 506 l~~L~~L~l~~~~ 518 (585)
+.+|..|++-+|.
T Consensus 345 ~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 345 LFSLSTLNLLSNP 357 (498)
T ss_pred cceeeeeehccCc
Confidence 7788888888765
No 40
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=1.2e-05 Score=67.89 Aligned_cols=104 Identities=20% Similarity=0.231 Sum_probs=75.4
Q ss_pred CcEEecCC-CCCHHHHHHHHhhccccceeeccccC-CCHHHHHHHHhcCCCCCeEEeeCC-CCChHHHHHHHHhcccCCE
Q 007912 435 LRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAG-ESDLGLHHVLSGCDSLRKLEIMDC-PFGDKALLANAAKLETMRS 511 (585)
Q Consensus 435 L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~l~~L~~ 511 (585)
++.++-++ .|...++.++. .++.++.|.+.+|. +.|.++..+....++|+.|+|++| .||+.++. .+..+++|+.
T Consensus 103 IeaVDAsds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA-CLLKLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH-HHHHhhhhHH
Confidence 45555555 56667777763 36778888888887 788888888666788888888888 88888865 6677888888
Q ss_pred EEeeccc-C--CHHHHHHHHhhCCCcEEEEec
Q 007912 512 LWMSSCS-V--SFEACKLLGQKMPRLNVEVID 540 (585)
Q Consensus 512 L~l~~~~-i--~~~~~~~l~~~~~~l~~~~~~ 540 (585)
|.+.+-+ + -......+.+.+|++++....
T Consensus 181 L~l~~l~~v~~~e~~~~~Le~aLP~c~I~~~d 212 (221)
T KOG3864|consen 181 LHLYDLPYVANLELVQRQLEEALPKCDIVGPD 212 (221)
T ss_pred HHhcCchhhhchHHHHHHHHHhCcccceechh
Confidence 8887765 3 223345566788998876543
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.88 E-value=3.9e-06 Score=74.95 Aligned_cols=127 Identities=16% Similarity=0.112 Sum_probs=78.3
Q ss_pred CCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCCCCCHHHHHHH
Q 007912 373 PKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSGLLTDRVFEYI 452 (585)
Q Consensus 373 ~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l 452 (585)
..|+.++++.+.++. +..-.+-.|.++.|++++... . .+. -++.+++|+.|+|+++. -..+...
T Consensus 284 q~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i------~------~v~-nLa~L~~L~~LDLS~N~-Ls~~~Gw 347 (490)
T KOG1259|consen 284 QELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRI------R------TVQ-NLAELPQLQLLDLSGNL-LAECVGW 347 (490)
T ss_pred hhhhhccccccchhh--hhhhhhhccceeEEeccccce------e------eeh-hhhhcccceEeecccch-hHhhhhh
Confidence 345555554444431 111122358888888876432 1 011 15567888888888841 1122222
Q ss_pred HhhccccceeeccccCCCH-HHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccC
Q 007912 453 GTYAKKLEMLSVAFAGESD-LGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSV 519 (585)
Q Consensus 453 ~~~~~~L~~L~l~~~~i~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 519 (585)
-..+.+++.|.+++|.|.+ .|+.. +-+|..||+++|++....-..-+.++|.|+.+.+.+|++
T Consensus 348 h~KLGNIKtL~La~N~iE~LSGL~K----LYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 348 HLKLGNIKTLKLAQNKIETLSGLRK----LYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred HhhhcCEeeeehhhhhHhhhhhhHh----hhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 3346678888888887643 33433 367889999999876655455678889999999999874
No 42
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.79 E-value=0.00012 Score=77.53 Aligned_cols=85 Identities=16% Similarity=0.208 Sum_probs=53.5
Q ss_pred CCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHH--HH
Q 007912 398 PSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDL--GL 474 (585)
Q Consensus 398 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~--~~ 474 (585)
++|+.|+++++.. +..| .. -.++|+.|++++ .++.. ...+ .+.|+.|++++|+++.. .+
T Consensus 346 ~sL~~L~Ls~N~L------~~LP--~~------lp~~L~~LdLs~N~Lt~L-P~~l---~~sL~~LdLs~N~L~~LP~sl 407 (754)
T PRK15370 346 PELQVLDVSKNQI------TVLP--ET------LPPTITTLDVSRNALTNL-PENL---PAALQIMQASRNNLVRLPESL 407 (754)
T ss_pred CcccEEECCCCCC------CcCC--hh------hcCCcCEEECCCCcCCCC-CHhH---HHHHHHHhhccCCcccCchhH
Confidence 6788888876533 1111 11 125788999877 33311 1112 23588999999987532 34
Q ss_pred HHHHhcCCCCCeEEeeCCCCChHHHH
Q 007912 475 HHVLSGCDSLRKLEIMDCPFGDKALL 500 (585)
Q Consensus 475 ~~l~~~~~~L~~L~l~~~~~~~~~~~ 500 (585)
..+...++++..|++.+|+++...+.
T Consensus 408 ~~~~~~~~~l~~L~L~~Npls~~tl~ 433 (754)
T PRK15370 408 PHFRGEGPQPTRIIVEYNPFSERTIQ 433 (754)
T ss_pred HHHhhcCCCccEEEeeCCCccHHHHH
Confidence 44445678999999999998876544
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.75 E-value=1.7e-06 Score=60.06 Aligned_cols=61 Identities=16% Similarity=0.192 Sum_probs=43.9
Q ss_pred cccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccC
Q 007912 457 KKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSV 519 (585)
Q Consensus 457 ~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 519 (585)
|+|++|++++|.++......+ .++++|++|++++|.++.... ..+..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f-~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSF-SNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTT-TTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHH-cCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCCcC
Confidence 467888888888765554444 677888888888887654322 2467888889988888864
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.73 E-value=3.1e-06 Score=75.54 Aligned_cols=126 Identities=16% Similarity=0.129 Sum_probs=82.6
Q ss_pred hCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHH
Q 007912 396 NRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGL 474 (585)
Q Consensus 396 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 474 (585)
.+..|++++|++..+ + .+.....-.|.++.|+++. .+.. +.. ...+++|+.|++++|.++...-
T Consensus 282 TWq~LtelDLS~N~I------~------~iDESvKL~Pkir~L~lS~N~i~~--v~n-La~L~~L~~LDLS~N~Ls~~~G 346 (490)
T KOG1259|consen 282 TWQELTELDLSGNLI------T------QIDESVKLAPKLRRLILSQNRIRT--VQN-LAELPQLQLLDLSGNLLAECVG 346 (490)
T ss_pred hHhhhhhccccccch------h------hhhhhhhhccceeEEeccccceee--ehh-hhhcccceEeecccchhHhhhh
Confidence 456788888876422 1 2222345568899999977 2221 122 2345779999999988755332
Q ss_pred HHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCH-HHHHHHHhhCCCcEEEEecCC
Q 007912 475 HHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSF-EACKLLGQKMPRLNVEVIDES 542 (585)
Q Consensus 475 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~l~~~~~~l~~~~~~~~ 542 (585)
.. ..+-+.+.|.+++|.+.+-+ .+..+-+|.+|++.+|+|.. +.++.+ .++|.+....+.++
T Consensus 347 wh--~KLGNIKtL~La~N~iE~LS---GL~KLYSLvnLDl~~N~Ie~ldeV~~I-G~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 347 WH--LKLGNIKTLKLAQNKIETLS---GLRKLYSLVNLDLSSNQIEELDEVNHI-GNLPCLETLRLTGN 409 (490)
T ss_pred hH--hhhcCEeeeehhhhhHhhhh---hhHhhhhheeccccccchhhHHHhccc-ccccHHHHHhhcCC
Confidence 22 35678889999988765543 55677899999999999844 444444 36888876666665
No 45
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.57 E-value=1.4e-06 Score=81.01 Aligned_cols=86 Identities=12% Similarity=0.080 Sum_probs=59.5
Q ss_pred hhhCCCCcEEecCCCCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhccc
Q 007912 429 VQHCKDLRRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLET 508 (585)
Q Consensus 429 ~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 508 (585)
+.+|..|++|+++.+.-..-.......+++|.+|++..|++++...+.. -+++|++||+++|.++.-.. -+.++ .
T Consensus 224 f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~c--lLrsL~rLDlSNN~is~Lp~--sLgnl-h 298 (565)
T KOG0472|consen 224 FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC--LLRSLERLDLSNNDISSLPY--SLGNL-H 298 (565)
T ss_pred CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHH--HhhhhhhhcccCCccccCCc--ccccc-e
Confidence 4456677777776642333333445567889999999999876655543 35889999999998775432 23455 8
Q ss_pred CCEEEeecccC
Q 007912 509 MRSLWMSSCSV 519 (585)
Q Consensus 509 L~~L~l~~~~i 519 (585)
|+.|.+.||++
T Consensus 299 L~~L~leGNPl 309 (565)
T KOG0472|consen 299 LKFLALEGNPL 309 (565)
T ss_pred eeehhhcCCch
Confidence 88999999974
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.54 E-value=5.2e-05 Score=81.74 Aligned_cols=107 Identities=18% Similarity=0.122 Sum_probs=56.9
Q ss_pred hCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHH
Q 007912 129 SFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLV 208 (585)
Q Consensus 129 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 208 (585)
.+++|++|-+.+............+..+|.|+.||+++|.-...-+..++. +-+|++|+++++. +. .++.-.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~----Li~LryL~L~~t~--I~--~LP~~l 614 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE----LVHLRYLDLSDTG--IS--HLPSGL 614 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh----hhhhhcccccCCC--cc--ccchHH
Confidence 345677777665321011122233456777788887776422222222333 3377777777663 32 222223
Q ss_pred HhCCCCceEEeCCCCChHHHHHHHhhCCCceEEcC
Q 007912 209 VRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVELGT 243 (585)
Q Consensus 209 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 243 (585)
..+..|.+|++..+.....++.....+++|+.|.+
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRL 649 (889)
T ss_pred HHHHhhheeccccccccccccchhhhcccccEEEe
Confidence 34456777777666555555555555666666665
No 47
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.53 E-value=6.8e-05 Score=75.12 Aligned_cols=224 Identities=19% Similarity=0.168 Sum_probs=120.7
Q ss_pred CCCCCEEEeecccCCchhHHHHHhc---CCC-CcEEecccc-cchhHHHHHHhcC----CCCceEEeccCCCCCCCCCCC
Q 007912 289 CSGLTTLNLSYATIQSPDLIKLVSQ---CPK-LQCLWVLDY-IEDSGLEALAATC----KDLRELRVFPSEPFGDEPNVS 359 (585)
Q Consensus 289 ~~~L~~L~L~~~~~~~~~l~~l~~~---~~~-L~~L~l~~~-~~~~~~~~l~~~~----~~L~~L~l~~~~~~~~~~~~~ 359 (585)
..++++|++++|.++......+... .+. +..|++..+ ++|.++..+...+ +.++++++.. +.
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~---------ns 273 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSR---------NS 273 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhc---------CC
Confidence 4567777777777665554443333 233 444666554 5565565555433 3457777764 34
Q ss_pred cchHH---HHHHHhCCCCCceehhcccCCcHHHHHHHHhhC---CCCceeeeeecCCCCCCCCCCCcchhh-HHHHhhhC
Q 007912 360 LTEQG---LVLVSEGCPKLESVLYFCRRMSNDALVTIAKNR---PSMIRFRLCIIDPQTPDYLTLEPLDVG-FGAIVQHC 432 (585)
Q Consensus 360 l~~~~---l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~---~~L~~L~L~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 432 (585)
+++.+ +......++.++.+...++.+++.+...+.+.. ..+..+.+.+.+. .+.. ..+ +......-
T Consensus 274 i~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~-----~~~~--~~~~~~~~~~~~ 346 (478)
T KOG4308|consen 274 ITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGK-----GTRG--GTSVLAEADAQR 346 (478)
T ss_pred ccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCc-----cchh--HHHHHHHHHHHh
Confidence 44443 333444567777777777778777766655433 3344444432211 1100 011 11111111
Q ss_pred CCCcEEecCC-CCCHHHHHHHHh----hccccceeeccccCCCHHHHHHHH---hcCCCCCeEEeeCCCCChHHHHHHH-
Q 007912 433 KDLRRLSLSG-LLTDRVFEYIGT----YAKKLEMLSVAFAGESDLGLHHVL---SGCDSLRKLEIMDCPFGDKALLANA- 503 (585)
Q Consensus 433 ~~L~~L~l~~-~~~~~~~~~l~~----~~~~L~~L~l~~~~i~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~~- 503 (585)
..+.....++ ...+.....+.. ..+.+..+++..+.+.+.+...+. ...+.++.++++.|...++....+.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~ 426 (478)
T KOG4308|consen 347 QLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTE 426 (478)
T ss_pred hhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHH
Confidence 1111222233 333333333222 233466777777776555554432 3478899999999966666544443
Q ss_pred ---HhcccCCEEEeecccCCHHHHHHHHh
Q 007912 504 ---AKLETMRSLWMSSCSVSFEACKLLGQ 529 (585)
Q Consensus 504 ---~~l~~L~~L~l~~~~i~~~~~~~l~~ 529 (585)
.+. .++.++++.+.++..+.....+
T Consensus 427 ~~~~~~-~~~~~~l~~~~~~~~~~~~~~~ 454 (478)
T KOG4308|consen 427 QLSRNG-SLKALRLSRNPITALGTEELQR 454 (478)
T ss_pred hhhhcc-cchhhhhccChhhhcchHHHHH
Confidence 445 8999999999988877766654
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.46 E-value=8.6e-06 Score=81.62 Aligned_cols=104 Identities=17% Similarity=0.217 Sum_probs=67.9
Q ss_pred CCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCCC-CCHHHHHHHHhhccccceeeccccCCCH-HHH
Q 007912 397 RPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSGL-LTDRVFEYIGTYAKKLEMLSVAFAGESD-LGL 474 (585)
Q Consensus 397 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~l~~~~i~~-~~~ 474 (585)
+|.|+.|+|++.....| ..+..|+.|++|+|+.+ +. .+..+......|+.|.+.+|.++. .++
T Consensus 186 l~ale~LnLshNk~~~v-------------~~Lr~l~~LkhLDlsyN~L~--~vp~l~~~gc~L~~L~lrnN~l~tL~gi 250 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKV-------------DNLRRLPKLKHLDLSYNCLR--HVPQLSMVGCKLQLLNLRNNALTTLRGI 250 (1096)
T ss_pred HHHhhhhccchhhhhhh-------------HHHHhcccccccccccchhc--cccccchhhhhheeeeecccHHHhhhhH
Confidence 46778888876533222 13567788888888762 21 122222222238889998888743 444
Q ss_pred HHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccC
Q 007912 475 HHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSV 519 (585)
Q Consensus 475 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 519 (585)
+. +.+|+.||+++|-+.+-.-...+..+..|+.|++.||++
T Consensus 251 e~----LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 251 EN----LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred Hh----hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 44 488999999999776655445667778899999999875
No 49
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=8e-05 Score=63.04 Aligned_cols=81 Identities=21% Similarity=0.275 Sum_probs=70.9
Q ss_pred ccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCC-CCChHHHHHHHHhcccCCEEEeeccc-CCHHHHHHHHhhCCCcE
Q 007912 458 KLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDC-PFGDKALLANAAKLETMRSLWMSSCS-VSFEACKLLGQKMPRLN 535 (585)
Q Consensus 458 ~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~l~~~~~~l~ 535 (585)
.++.++-+++.|..+|+..+ ..+++++.|.+.+| .+.|.++..+-.-.++|+.|++++|. ||+.|+..+. ++++++
T Consensus 102 ~IeaVDAsds~I~~eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHL-RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHH-hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhH
Confidence 37888999999999999998 89999999999999 89999988777888999999999995 9999999986 577776
Q ss_pred EEEec
Q 007912 536 VEVID 540 (585)
Q Consensus 536 ~~~~~ 540 (585)
...+.
T Consensus 180 ~L~l~ 184 (221)
T KOG3864|consen 180 RLHLY 184 (221)
T ss_pred HHHhc
Confidence 54443
No 50
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.42 E-value=3.2e-05 Score=77.40 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=36.6
Q ss_pred ccccceeeccccCCCHHHHHHHHh----cCCCCCeEEeeCCCCChHHHHHHH---HhcccCCEEEeecccCC
Q 007912 456 AKKLEMLSVAFAGESDLGLHHVLS----GCDSLRKLEIMDCPFGDKALLANA---AKLETMRSLWMSSCSVS 520 (585)
Q Consensus 456 ~~~L~~L~l~~~~i~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~~~~~---~~l~~L~~L~l~~~~i~ 520 (585)
.+.+++++++.|...+++...+.. +. .++.+.++.+.++..+..+.. ..-+..+.+...+|.++
T Consensus 403 ~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (478)
T KOG4308|consen 403 NEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPITALGTEELQRALALNPGILAIRLRGNVIG 473 (478)
T ss_pred cchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhhhcchHHHHHHHhcCCCcceeecccCccc
Confidence 556777777777655544443322 24 788888888866555433333 33345556665555543
No 51
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.02 E-value=4.6e-05 Score=52.77 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=28.9
Q ss_pred hccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCC
Q 007912 455 YAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPF 494 (585)
Q Consensus 455 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~ 494 (585)
.+++|++|++++|.++......+ .++++|++|++++|++
T Consensus 23 ~l~~L~~L~l~~N~l~~i~~~~f-~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 23 NLPNLETLDLSNNNLTSIPPDAF-SNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TGTTESEEEETSSSESEEETTTT-TTSTTESEEEETSSSB
T ss_pred CCCCCCEeEccCCccCccCHHHH-cCCCCCCEEeCcCCcC
Confidence 45678888888887765554444 7789999999998863
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.96 E-value=0.00049 Score=43.47 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=17.3
Q ss_pred ccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCC
Q 007912 458 KLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFG 495 (585)
Q Consensus 458 ~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~ 495 (585)
+|++|++++|+|++.... +..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~--l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPE--LSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGH--GTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCch--HhCCCCCCEEEecCCCCC
Confidence 455555555555543221 245555555555555544
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.95 E-value=0.00079 Score=42.51 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=29.5
Q ss_pred CCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCH
Q 007912 482 DSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSF 521 (585)
Q Consensus 482 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~ 521 (585)
++|++|++++|++++-. ..+.++++|+.|++++|+|++
T Consensus 1 ~~L~~L~l~~N~i~~l~--~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLP--PELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHG--GHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccC--chHhCCCCCCEEEecCCCCCC
Confidence 57899999999988754 236789999999999998863
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.86 E-value=0.00024 Score=71.73 Aligned_cols=106 Identities=21% Similarity=0.172 Sum_probs=69.5
Q ss_pred CCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCCCCCHHHHHH
Q 007912 372 CPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSGLLTDRVFEY 451 (585)
Q Consensus 372 ~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 451 (585)
+|.|+.|++..+++++-. ....|++|++|+|++...+..+.+. -..|. |+.|.++++- -..+..
T Consensus 186 l~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~-----------~~gc~-L~~L~lrnN~-l~tL~g 249 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLS-----------MVGCK-LQLLNLRNNA-LTTLRG 249 (1096)
T ss_pred HHHhhhhccchhhhhhhH---HHHhcccccccccccchhccccccc-----------hhhhh-heeeeecccH-HHhhhh
Confidence 677888877767776544 3346899999999876443222332 12344 8889998831 122333
Q ss_pred HHhhccccceeeccccCCCHH-HHHHHHhcCCCCCeEEeeCCCCC
Q 007912 452 IGTYAKKLEMLSVAFAGESDL-GLHHVLSGCDSLRKLEIMDCPFG 495 (585)
Q Consensus 452 l~~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~~L~~L~l~~~~~~ 495 (585)
+ ..+++|+.|++++|-+.+- .+..+ ..+..|+.|++.+|++.
T Consensus 250 i-e~LksL~~LDlsyNll~~hseL~pL-wsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 250 I-ENLKSLYGLDLSYNLLSEHSELEPL-WSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred H-HhhhhhhccchhHhhhhcchhhhHH-HHHHHHHHHhhcCCccc
Confidence 3 3467899999999986443 34443 66788999999999753
No 55
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.81 E-value=1.8e-05 Score=64.74 Aligned_cols=81 Identities=21% Similarity=0.188 Sum_probs=42.8
Q ss_pred CCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCC
Q 007912 105 YPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTC 184 (585)
Q Consensus 105 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~ 184 (585)
+.+++.|.++++.++... ..++ .+.+|+.|++.+. ++ ..+..-.+.+++|+.|++..|.+.. ++.-...+
T Consensus 32 ~s~ITrLtLSHNKl~~vp-pnia-~l~nlevln~~nn-qi--e~lp~~issl~klr~lnvgmnrl~~-----lprgfgs~ 101 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVP-PNIA-ELKNLEVLNLSNN-QI--EELPTSISSLPKLRILNVGMNRLNI-----LPRGFGSF 101 (264)
T ss_pred hhhhhhhhcccCceeecC-CcHH-Hhhhhhhhhcccc-hh--hhcChhhhhchhhhheecchhhhhc-----CccccCCC
Confidence 356777777777554321 1222 3466777777653 22 1222223366777777776665332 22223345
Q ss_pred CcccEEEeccc
Q 007912 185 TSLVSLNIACL 195 (585)
Q Consensus 185 ~~L~~L~l~~~ 195 (585)
|.|+.|++.+.
T Consensus 102 p~levldltyn 112 (264)
T KOG0617|consen 102 PALEVLDLTYN 112 (264)
T ss_pred chhhhhhcccc
Confidence 56777776644
No 56
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.66 E-value=0.0015 Score=70.85 Aligned_cols=109 Identities=24% Similarity=0.293 Sum_probs=69.2
Q ss_pred cCCCCcEEEeccccc--ChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccC
Q 007912 104 GYPWLEELKLKRMVV--TDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFP 181 (585)
Q Consensus 104 ~~~~L~~L~l~~~~~--~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 181 (585)
.++.|++|-+..+.. ... -..+...+|.|+.|+|++|... ..++.....+-+|+.|+++++.+.. ++.-.
T Consensus 543 ~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l--~~LP~~I~~Li~LryL~L~~t~I~~-----LP~~l 614 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSL--SKLPSSIGELVHLRYLDLSDTGISH-----LPSGL 614 (889)
T ss_pred CCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCcc--CcCChHHhhhhhhhcccccCCCccc-----cchHH
Confidence 566788888877642 211 1223446799999999986443 2233334467899999999988653 33333
Q ss_pred CCCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCC
Q 007912 182 DTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAV 223 (585)
Q Consensus 182 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 223 (585)
..+..|.+|++..+...- .+..+...+++|++|.+....
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~---~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLE---SIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred HHHHhhheeccccccccc---cccchhhhcccccEEEeeccc
Confidence 345588899988663111 114445568999999986653
No 57
>PLN03150 hypothetical protein; Provisional
Probab=96.61 E-value=0.0023 Score=67.50 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=33.0
Q ss_pred hhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCC
Q 007912 429 VQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFG 495 (585)
Q Consensus 429 ~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~ 495 (585)
+..+++|+.|+|++ .+....... ...+++|+.|+|++|.++......+ ..+++|+.|++++|.++
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGSIPESL-GQLTSLRILNLNGNSLS 503 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCCCCchHH-hcCCCCCEEECcCCccc
Confidence 34556666666655 222211111 2334556666666666554433333 45566666666666544
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.001 Score=59.34 Aligned_cols=111 Identities=18% Similarity=0.074 Sum_probs=69.1
Q ss_pred CCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHH
Q 007912 398 PSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHH 476 (585)
Q Consensus 398 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~ 476 (585)
.+.+.|+.-+|+. .-..++..+|.|+.|.|+- .|+ .+..+ ..|++|++|.|..|.|.+..-.+
T Consensus 19 ~~vkKLNcwg~~L-------------~DIsic~kMp~lEVLsLSvNkIs--sL~pl-~rCtrLkElYLRkN~I~sldEL~ 82 (388)
T KOG2123|consen 19 ENVKKLNCWGCGL-------------DDISICEKMPLLEVLSLSVNKIS--SLAPL-QRCTRLKELYLRKNCIESLDELE 82 (388)
T ss_pred HHhhhhcccCCCc-------------cHHHHHHhcccceeEEeeccccc--cchhH-HHHHHHHHHHHHhcccccHHHHH
Confidence 4667777655532 2234678888888888875 332 22222 34778888888888886544333
Q ss_pred HHhcCCCCCeEEeeCCCCChHH----HHHHHHhcccCCEEEeecccCCHHHHHH
Q 007912 477 VLSGCDSLRKLEIMDCPFGDKA----LLANAAKLETMRSLWMSSCSVSFEACKL 526 (585)
Q Consensus 477 l~~~~~~L~~L~l~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~i~~~~~~~ 526 (585)
.+.++|+|+.|.|..|+-...+ -..+++.+|+|+.|+ +-.+|.+.++.
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD--nv~VteeEle~ 134 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD--NVPVTEEELEE 134 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc--CccccHHHHHH
Confidence 3488888888888887432222 223567788888876 22366655544
No 59
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.35 E-value=0.00012 Score=60.07 Aligned_cols=82 Identities=21% Similarity=0.254 Sum_probs=42.7
Q ss_pred cCCCCcEEEcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHHHHHhh
Q 007912 155 DCKNLKELDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQ 234 (585)
Q Consensus 155 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 234 (585)
.+.++..|.+++|.++..... +.. +.+|+.|++.+. ++. .+..-+..+|+|+.|++.-+ .+..+++.+++
T Consensus 31 ~~s~ITrLtLSHNKl~~vppn-ia~----l~nlevln~~nn--qie--~lp~~issl~klr~lnvgmn-rl~~lprgfgs 100 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPN-IAE----LKNLEVLNLSNN--QIE--ELPTSISSLPKLRILNVGMN-RLNILPRGFGS 100 (264)
T ss_pred chhhhhhhhcccCceeecCCc-HHH----hhhhhhhhcccc--hhh--hcChhhhhchhhhheecchh-hhhcCccccCC
Confidence 445667777887776543322 333 236777777655 222 22222344566666666422 23344455555
Q ss_pred CCCceEEcCccc
Q 007912 235 APQLVELGTGTY 246 (585)
Q Consensus 235 ~~~L~~L~l~~~ 246 (585)
+|-|+.|++.+.
T Consensus 101 ~p~levldltyn 112 (264)
T KOG0617|consen 101 FPALEVLDLTYN 112 (264)
T ss_pred Cchhhhhhcccc
Confidence 566665555443
No 60
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=96.30 E-value=0.0039 Score=59.62 Aligned_cols=38 Identities=24% Similarity=0.503 Sum_probs=35.0
Q ss_pred CCCCCCHHHHHHHHhccCChHHHHHHHHHhHHHHHhhc
Q 007912 6 SYSSLPEDVLEHVFSFVQSDKDRNVISLVCKSWYEIER 43 (585)
Q Consensus 6 ~i~~LP~ell~~If~~L~~~~~~~~~~~Vcr~W~~~~~ 43 (585)
++.+||+|+|..|..+|+..-|+++++.|||.||..+.
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 57799999999999999878899999999999999863
No 61
>PLN03150 hypothetical protein; Provisional
Probab=96.12 E-value=0.0062 Score=64.31 Aligned_cols=93 Identities=17% Similarity=0.124 Sum_probs=66.4
Q ss_pred CCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEE
Q 007912 434 DLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSL 512 (585)
Q Consensus 434 ~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 512 (585)
.++.|+|++ .+.......+ ..+++|+.|+|++|.++......+ ..+++|+.|++++|.++... ...+..+++|+.|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~i-P~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGSI-PESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCCCCCC-chHHhcCCCCCEE
Confidence 377888876 3332222233 346889999999999876544444 77899999999999877543 2356789999999
Q ss_pred EeecccCCHHHHHHHHh
Q 007912 513 WMSSCSVSFEACKLLGQ 529 (585)
Q Consensus 513 ~l~~~~i~~~~~~~l~~ 529 (585)
++++|.++...-..+..
T Consensus 496 ~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 496 NLNGNSLSGRVPAALGG 512 (623)
T ss_pred ECcCCcccccCChHHhh
Confidence 99999876554444443
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.0027 Score=56.76 Aligned_cols=112 Identities=16% Similarity=0.175 Sum_probs=60.7
Q ss_pred CCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHH
Q 007912 374 KLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYI 452 (585)
Q Consensus 374 ~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l 452 (585)
+.++|+.++..++|.++ +..+|.|+.|.|+-.. |+ -..-++.|.+|++|+|.. +|.+..-..-
T Consensus 20 ~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNk------Is-------sL~pl~rCtrLkElYLRkN~I~sldEL~Y 83 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNK------IS-------SLAPLQRCTRLKELYLRKNCIESLDELEY 83 (388)
T ss_pred HhhhhcccCCCccHHHH---HHhcccceeEEeeccc------cc-------cchhHHHHHHHHHHHHHhcccccHHHHHH
Confidence 34445566666666543 3346777777776321 11 111256777788887765 4444333333
Q ss_pred HhhccccceeeccccCCC-HHHH---HHHHhcCCCCCeEEeeCCCCChHHHHHHH
Q 007912 453 GTYAKKLEMLSVAFAGES-DLGL---HHVLSGCDSLRKLEIMDCPFGDKALLANA 503 (585)
Q Consensus 453 ~~~~~~L~~L~l~~~~i~-~~~~---~~l~~~~~~L~~L~l~~~~~~~~~~~~~~ 503 (585)
...+|+|++|.|..|+.. ..|- ..++..+|+|++|| +-.++.+.+...+
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD--nv~VteeEle~AL 136 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD--NVPVTEEELEEAL 136 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc--CccccHHHHHHHH
Confidence 355677888888777632 1111 12334567777765 2256666555443
No 63
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=95.64 E-value=0.013 Score=32.10 Aligned_cols=9 Identities=44% Similarity=1.095 Sum_probs=3.3
Q ss_pred CCeEEeeCC
Q 007912 484 LRKLEIMDC 492 (585)
Q Consensus 484 L~~L~l~~~ 492 (585)
|++|++++|
T Consensus 4 L~~L~l~~C 12 (26)
T smart00367 4 LRELDLSGC 12 (26)
T ss_pred CCEeCCCCC
Confidence 333333333
No 64
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.57 E-value=0.008 Score=32.16 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=13.1
Q ss_pred cccCCEEEeecccCCHHHHHHHH
Q 007912 506 LETMRSLWMSSCSVSFEACKLLG 528 (585)
Q Consensus 506 l~~L~~L~l~~~~i~~~~~~~l~ 528 (585)
+++|+.|++++|+|++++++.++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 35666667766666666666654
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.48 E-value=0.01 Score=52.91 Aligned_cols=60 Identities=22% Similarity=0.350 Sum_probs=29.9
Q ss_pred CCCCcEEecCCC--CCHHHHHHHHhhccccceeeccccCCCH-HHHHHHHhcCCCCCeEEeeCC
Q 007912 432 CKDLRRLSLSGL--LTDRVFEYIGTYAKKLEMLSVAFAGESD-LGLHHVLSGCDSLRKLEIMDC 492 (585)
Q Consensus 432 ~~~L~~L~l~~~--~~~~~~~~l~~~~~~L~~L~l~~~~i~~-~~~~~l~~~~~~L~~L~l~~~ 492 (585)
+|+|++|.++.+ ....++..+...+|+|++|.++.|+|.+ ..+..+ ..+++|..|++.+|
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl-~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL-KELENLKSLDLFNC 126 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh-hhhcchhhhhcccC
Confidence 456666666553 3333444555555566666666665442 122222 33455555555555
No 66
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.40 E-value=0.0091 Score=54.67 Aligned_cols=40 Identities=25% Similarity=0.577 Sum_probs=35.1
Q ss_pred CcCCCCCCCC----HHHHHHHHhccCChHHHHHHHHHhHHHHHhh
Q 007912 2 LKKMSYSSLP----EDVLEHVFSFVQSDKDRNVISLVCKSWYEIE 42 (585)
Q Consensus 2 ~~~~~i~~LP----~ell~~If~~L~~~~~~~~~~~Vcr~W~~~~ 42 (585)
+.++=|..|| +++.+.||+||+ ..+++.+-+|||+|+++.
T Consensus 70 LqrDFi~~lP~~gl~hi~e~ilsyld-~~sLc~celv~k~W~r~l 113 (499)
T KOG0281|consen 70 LQRDFITALPEQGLDHIAENILSYLD-ALSLCACELVCKEWKRVL 113 (499)
T ss_pred HHHHHHHhcccccHHHHHHHHHHhcc-hhhhhHHHHHHHHHHHHh
Confidence 3444577899 999999999999 679999999999999987
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.37 E-value=0.0071 Score=53.84 Aligned_cols=62 Identities=24% Similarity=0.282 Sum_probs=29.5
Q ss_pred cccceeeccccCC-CHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeeccc
Q 007912 457 KKLEMLSVAFAGE-SDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCS 518 (585)
Q Consensus 457 ~~L~~L~l~~~~i-~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 518 (585)
|+|+.|.++.|.. -..++..++..+|+|++|++++|++.+..-..-+..+++|..|++.+|.
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 4455555555532 2223333444455555555555554432222233444555555555554
No 68
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=95.26 E-value=0.025 Score=30.94 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=18.6
Q ss_pred CCCCcEEeecccCCCCHHHHHHHH
Q 007912 130 FKNFKVLVLSSCEGFSTHGLAAIA 153 (585)
Q Consensus 130 ~~~L~~L~L~~~~~~~~~~l~~l~ 153 (585)
|++|++|+|++|..+++.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 467888888888888888877765
No 69
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.14 E-value=0.017 Score=52.68 Aligned_cols=36 Identities=33% Similarity=0.688 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHhccC----ChHHHHHHHHHhHHHHHhh
Q 007912 7 YSSLPEDVLEHVFSFVQ----SDKDRNVISLVCKSWYEIE 42 (585)
Q Consensus 7 i~~LP~ell~~If~~L~----~~~~~~~~~~Vcr~W~~~~ 42 (585)
|..||||||..||...- +.+++.++++|||.|+..+
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~ 146 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCA 146 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHH
Confidence 67899999999999632 2478999999999999987
No 70
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.12 E-value=0.014 Score=31.20 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=11.4
Q ss_pred cccceeeccccCCCHHHHHHH
Q 007912 457 KKLEMLSVAFAGESDLGLHHV 477 (585)
Q Consensus 457 ~~L~~L~l~~~~i~~~~~~~l 477 (585)
++|++|+|++|+|++.++.++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 456666666666666666554
No 71
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.05 E-value=0.016 Score=49.44 Aligned_cols=88 Identities=23% Similarity=0.319 Sum_probs=59.3
Q ss_pred hhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHH-HHHHHhcCCCCCeEEeeCCCCChHHHHH--HHH
Q 007912 429 VQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLG-LHHVLSGCDSLRKLEIMDCPFGDKALLA--NAA 504 (585)
Q Consensus 429 ~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~-~~~l~~~~~~L~~L~l~~~~~~~~~~~~--~~~ 504 (585)
+.++++|.+|.+++ .|++. -..+....|+|++|.+.+|.|-.-+ +..+ ..||+|++|.+-+|+++...-.. ++.
T Consensus 60 lp~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL-a~~p~L~~Ltll~Npv~~k~~YR~yvl~ 137 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNSIQELGDLDPL-ASCPKLEYLTLLGNPVEHKKNYRLYVLY 137 (233)
T ss_pred CCCccccceEEecCCcceee-ccchhhhccccceEEecCcchhhhhhcchh-ccCCccceeeecCCchhcccCceeEEEE
Confidence 55677888888877 33332 2234556788899999888864322 4444 56889999999988877655221 345
Q ss_pred hcccCCEEEeeccc
Q 007912 505 KLETMRSLWMSSCS 518 (585)
Q Consensus 505 ~l~~L~~L~l~~~~ 518 (585)
.+|+|+.|++++=.
T Consensus 138 klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 138 KLPSLRTLDFQKVT 151 (233)
T ss_pred ecCcceEeehhhhh
Confidence 67888888876654
No 72
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.46 E-value=0.06 Score=46.13 Aligned_cols=101 Identities=12% Similarity=0.066 Sum_probs=67.9
Q ss_pred CCcEEecCCCCCHHHHHHH--HhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCE
Q 007912 434 DLRRLSLSGLLTDRVFEYI--GTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRS 511 (585)
Q Consensus 434 ~L~~L~l~~~~~~~~~~~l--~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 511 (585)
+...++|++ ..+..+ ....++|.+|.+++|.|+.....-- ..+|+|..|.+.+|.+..-+-..-...||+|++
T Consensus 43 ~~d~iDLtd----Ndl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~-~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 43 QFDAIDLTD----NDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLD-TFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccceecccc----cchhhcccCCCccccceEEecCCcceeeccchh-hhccccceEEecCcchhhhhhcchhccCCccce
Confidence 455566654 222222 2346789999999999876543322 447899999999998777665556788999999
Q ss_pred EEeecccCCHHHHH--HHHhhCCCcEEEEe
Q 007912 512 LWMSSCSVSFEACK--LLGQKMPRLNVEVI 539 (585)
Q Consensus 512 L~l~~~~i~~~~~~--~l~~~~~~l~~~~~ 539 (585)
|.+-+|+++...-. .+.-++|++++...
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF 147 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDF 147 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeeh
Confidence 99999998654322 22335677655443
No 73
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=94.12 E-value=0.064 Score=29.90 Aligned_cols=23 Identities=22% Similarity=0.318 Sum_probs=13.0
Q ss_pred cCCEEEeecccCCHHHHHHHHhh
Q 007912 508 TMRSLWMSSCSVSFEACKLLGQK 530 (585)
Q Consensus 508 ~L~~L~l~~~~i~~~~~~~l~~~ 530 (585)
+|++|++++|.++++|+..+++.
T Consensus 3 ~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 3 SLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred ccCEEECCCCCCCHHHHHHHHHH
Confidence 45556666666666555555543
No 74
>PF13013 F-box-like_2: F-box-like domain
Probab=94.05 E-value=0.067 Score=41.23 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=28.5
Q ss_pred CCCCCCHHHHHHHHhccCChHHHHHHHHHhH--HHHHh
Q 007912 6 SYSSLPEDVLEHVFSFVQSDKDRNVISLVCK--SWYEI 41 (585)
Q Consensus 6 ~i~~LP~ell~~If~~L~~~~~~~~~~~Vcr--~W~~~ 41 (585)
.+.+||+|++..||.+.. ..+...+...|+ +|++-
T Consensus 21 tl~DLP~ELl~~I~~~C~-~~~l~~l~~~~~~~r~~r~ 57 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCN-DPILLALSRTCRAYRSWRD 57 (109)
T ss_pred chhhChHHHHHHHHhhcC-cHHHHHHHHHHHHHHHHHH
Confidence 378999999999999998 568888888888 44443
No 75
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.81 E-value=0.016 Score=46.23 Aligned_cols=97 Identities=18% Similarity=0.113 Sum_probs=64.5
Q ss_pred CCCcEEecCCCCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEE
Q 007912 433 KDLRRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSL 512 (585)
Q Consensus 433 ~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 512 (585)
..|+..+|+++.-......+....+.++.|++++|.|++...+ + ...+.|+.|+++.|++.... ..+..+.+|-.|
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~-Aam~aLr~lNl~~N~l~~~p--~vi~~L~~l~~L 128 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-L-AAMPALRSLNLRFNPLNAEP--RVIAPLIKLDML 128 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-H-hhhHHhhhcccccCccccch--HHHHHHHhHHHh
Confidence 4566667776433333445556677889999999998888777 3 56799999999999776544 233347788888
Q ss_pred EeecccCCHHHHHHHHhhCCC
Q 007912 513 WMSSCSVSFEACKLLGQKMPR 533 (585)
Q Consensus 513 ~l~~~~i~~~~~~~l~~~~~~ 533 (585)
+..+|.+.......+....|.
T Consensus 129 ds~~na~~eid~dl~~s~~~a 149 (177)
T KOG4579|consen 129 DSPENARAEIDVDLFYSSLPA 149 (177)
T ss_pred cCCCCccccCcHHHhccccHH
Confidence 888886443333344333333
No 76
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=93.64 E-value=0.076 Score=29.58 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=11.2
Q ss_pred ccceeeccccCCCHHHHHHHH
Q 007912 458 KLEMLSVAFAGESDLGLHHVL 478 (585)
Q Consensus 458 ~L~~L~l~~~~i~~~~~~~l~ 478 (585)
+|++|+|++|.+++.|...++
T Consensus 3 ~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 3 SLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred ccCEEECCCCCCCHHHHHHHH
Confidence 355555555555555555543
No 77
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=92.43 E-value=0.066 Score=42.81 Aligned_cols=63 Identities=14% Similarity=0.110 Sum_probs=49.1
Q ss_pred ccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCH
Q 007912 456 AKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSF 521 (585)
Q Consensus 456 ~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~ 521 (585)
...|+..+|++|.+.+..-.. ...++.++.|++++|.+++.... +..+|.|+.|++..|++..
T Consensus 52 ~~el~~i~ls~N~fk~fp~kf-t~kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~l~~ 114 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKF-TIKFPTATTLNLANNEISDVPEE--LAAMPALRSLNLRFNPLNA 114 (177)
T ss_pred CceEEEEecccchhhhCCHHH-hhccchhhhhhcchhhhhhchHH--HhhhHHhhhcccccCcccc
Confidence 345788899888876554443 35678899999999999887654 7789999999999998754
No 78
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=91.40 E-value=0.17 Score=50.62 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=16.1
Q ss_pred hcCCCCcEEecccc-cchhHHHHHHhcCCCCceEEec
Q 007912 312 SQCPKLQCLWVLDY-IEDSGLEALAATCKDLRELRVF 347 (585)
Q Consensus 312 ~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~l~ 347 (585)
..++.++.|++..+ +.+..- .....+++.|+++
T Consensus 252 ~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s 285 (394)
T COG4886 252 GNLSNLETLDLSNNQISSISS---LGSLTNLRELDLS 285 (394)
T ss_pred ccccccceecccccccccccc---ccccCccCEEecc
Confidence 34455666666654 221111 1245566666665
No 79
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=91.35 E-value=0.061 Score=54.05 Aligned_cols=105 Identities=18% Similarity=0.093 Sum_probs=70.9
Q ss_pred hCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHH
Q 007912 396 NRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGL 474 (585)
Q Consensus 396 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 474 (585)
.+.+|+.|++..... . .+...+..+++|++|++++ .|++ +..+. .++.|+.|++.+|.|++..-
T Consensus 93 ~~~~l~~l~l~~n~i------~------~i~~~l~~~~~L~~L~ls~N~I~~--i~~l~-~l~~L~~L~l~~N~i~~~~~ 157 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKI------E------KIENLLSSLVNLQVLDLSFNKITK--LEGLS-TLTLLKELNLSGNLISDISG 157 (414)
T ss_pred cccceeeeeccccch------h------hcccchhhhhcchheecccccccc--ccchh-hccchhhheeccCcchhccC
Confidence 356777777764322 1 1222256688999999988 3332 22222 23459999999999866432
Q ss_pred HHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccC
Q 007912 475 HHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSV 519 (585)
Q Consensus 475 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 519 (585)
. ..++.|+.+++++|.+++..... ...+.+++.+++.+|.+
T Consensus 158 ~---~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 158 L---ESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred C---ccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence 2 33689999999999887765321 57889999999999975
No 80
>PRK15386 type III secretion protein GogB; Provisional
Probab=91.01 E-value=0.7 Score=45.30 Aligned_cols=12 Identities=33% Similarity=0.440 Sum_probs=9.1
Q ss_pred CCCCEEEeeccc
Q 007912 290 SGLTTLNLSYAT 301 (585)
Q Consensus 290 ~~L~~L~L~~~~ 301 (585)
++|+.|++++|.
T Consensus 156 sSLk~L~Is~c~ 167 (426)
T PRK15386 156 PSLKTLSLTGCS 167 (426)
T ss_pred CcccEEEecCCC
Confidence 578888887776
No 81
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=90.65 E-value=0.42 Score=47.80 Aligned_cols=80 Identities=25% Similarity=0.299 Sum_probs=37.4
Q ss_pred CCCcEEEcccCCCCCcccccccccCCCC-CcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHHHHHhhC
Q 007912 157 KNLKELDLWESDVEDPSGNWLSKFPDTC-TSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQA 235 (585)
Q Consensus 157 ~~L~~L~l~~~~~~~~~~~~l~~~~~~~-~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 235 (585)
+.++.|++.++.+.+.. ...... ++|+.|+++... +.. +..-...+++|+.|+++++. +..++......
T Consensus 116 ~~l~~L~l~~n~i~~i~-----~~~~~~~~nL~~L~l~~N~--i~~--l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~ 185 (394)
T COG4886 116 TNLTSLDLDNNNITDIP-----PLIGLLKSNLKELDLSDNK--IES--LPSPLRNLPNLKNLDLSFND-LSDLPKLLSNL 185 (394)
T ss_pred cceeEEecCCcccccCc-----cccccchhhcccccccccc--hhh--hhhhhhccccccccccCCch-hhhhhhhhhhh
Confidence 55666666655544322 111122 256666666441 221 11123445666666666553 44444444455
Q ss_pred CCceEEcCccc
Q 007912 236 PQLVELGTGTY 246 (585)
Q Consensus 236 ~~L~~L~l~~~ 246 (585)
+.|+.|.+++.
T Consensus 186 ~~L~~L~ls~N 196 (394)
T COG4886 186 SNLNNLDLSGN 196 (394)
T ss_pred hhhhheeccCC
Confidence 55555555433
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=87.10 E-value=0.99 Score=45.19 Aligned_cols=84 Identities=14% Similarity=0.101 Sum_probs=44.5
Q ss_pred HHHhhccccceeeccccCC-CHHHHHHHHhcCCCCCeEEeeCC--CCChHHHHHHHHhcccCCEEEeecccCC------H
Q 007912 451 YIGTYAKKLEMLSVAFAGE-SDLGLHHVLSGCDSLRKLEIMDC--PFGDKALLANAAKLETMRSLWMSSCSVS------F 521 (585)
Q Consensus 451 ~l~~~~~~L~~L~l~~~~i-~~~~~~~l~~~~~~L~~L~l~~~--~~~~~~~~~~~~~l~~L~~L~l~~~~i~------~ 521 (585)
++....|.+..+.|++|++ .-.++..+++..|+|+.|+|++| .+..+.-. ---+...|++|.+.||+|. .
T Consensus 212 ~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el-~K~k~l~Leel~l~GNPlc~tf~~~s 290 (585)
T KOG3763|consen 212 HIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESEL-DKLKGLPLEELVLEGNPLCTTFSDRS 290 (585)
T ss_pred HhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhh-hhhcCCCHHHeeecCCccccchhhhH
Confidence 3333455566666666653 33344445556677777777776 33322200 1123345677777777642 2
Q ss_pred HHHHHHHhhCCCcE
Q 007912 522 EACKLLGQKMPRLN 535 (585)
Q Consensus 522 ~~~~~l~~~~~~l~ 535 (585)
+-+..+.+.+|.+.
T Consensus 291 ~yv~~i~~~FPKL~ 304 (585)
T KOG3763|consen 291 EYVSAIRELFPKLL 304 (585)
T ss_pred HHHHHHHHhcchhe
Confidence 34556666777754
No 83
>PRK15386 type III secretion protein GogB; Provisional
Probab=85.96 E-value=1.9 Score=42.37 Aligned_cols=12 Identities=8% Similarity=-0.080 Sum_probs=7.3
Q ss_pred CCCceEEEecCC
Q 007912 66 FPEVRSVELKGK 77 (585)
Q Consensus 66 ~~~l~~L~l~~~ 77 (585)
+.+++.|++++|
T Consensus 51 ~~~l~~L~Is~c 62 (426)
T PRK15386 51 ARASGRLYIKDC 62 (426)
T ss_pred hcCCCEEEeCCC
Confidence 455666666655
No 84
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=85.75 E-value=0.22 Score=50.03 Aligned_cols=126 Identities=18% Similarity=0.216 Sum_probs=77.4
Q ss_pred CCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCCC-CCHHHHH
Q 007912 372 CPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSGL-LTDRVFE 450 (585)
Q Consensus 372 ~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~ 450 (585)
+.+|+.|.+..+.+... ......+++|+.|++++..+.. + .+ +..++.|+.|++.++ +.+ +.
T Consensus 94 ~~~l~~l~l~~n~i~~i--~~~l~~~~~L~~L~ls~N~I~~---i------~~----l~~l~~L~~L~l~~N~i~~--~~ 156 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKI--ENLLSSLVNLQVLDLSFNKITK---L------EG----LSTLTLLKELNLSGNLISD--IS 156 (414)
T ss_pred ccceeeeeccccchhhc--ccchhhhhcchheecccccccc---c------cc----hhhccchhhheeccCcchh--cc
Confidence 66777776665665432 2213457999999998754311 1 12 334556999999873 222 11
Q ss_pred HHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccC
Q 007912 451 YIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSV 519 (585)
Q Consensus 451 ~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 519 (585)
.+ ..++.|+.+++++|.+++..... ...+.+|+.+++.+|.+....-... +..+..+++.+|.+
T Consensus 157 ~~-~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~---~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 157 GL-ESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDL---LKKLVLLSLLDNKI 220 (414)
T ss_pred CC-ccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHH---HHHHHHhhcccccc
Confidence 11 12678999999999987766522 3678999999999997655432222 22333336666654
No 85
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=85.49 E-value=0.54 Score=22.57 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=5.6
Q ss_pred cCCEEEeecccC
Q 007912 508 TMRSLWMSSCSV 519 (585)
Q Consensus 508 ~L~~L~l~~~~i 519 (585)
+|+.|++++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 456666666654
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=84.76 E-value=1.6 Score=43.78 Aligned_cols=44 Identities=20% Similarity=0.260 Sum_probs=19.3
Q ss_pred HHHHHhhccccceeecccc--CC-CHHHHHHHHhcCCCCCeEEeeCCCC
Q 007912 449 FEYIGTYAKKLEMLSVAFA--GE-SDLGLHHVLSGCDSLRKLEIMDCPF 494 (585)
Q Consensus 449 ~~~l~~~~~~L~~L~l~~~--~i-~~~~~~~l~~~~~~L~~L~l~~~~~ 494 (585)
+..+....|.|+.|+|++| .+ ++..+..+ +...|++|.+.+|++
T Consensus 236 ~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 236 LSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPL 282 (585)
T ss_pred hhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCcc
Confidence 3334444455555555554 22 23333332 223455555555543
No 87
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=84.74 E-value=0.46 Score=48.90 Aligned_cols=39 Identities=26% Similarity=0.591 Sum_probs=35.4
Q ss_pred cCCCCCCCCHHHHHHHHhccCChHHHHHHHHHhHHHHHhh
Q 007912 3 KKMSYSSLPEDVLEHVFSFVQSDKDRNVISLVCKSWYEIE 42 (585)
Q Consensus 3 ~~~~i~~LP~ell~~If~~L~~~~~~~~~~~Vcr~W~~~~ 42 (585)
.++-+..||.|+...||.+|+ .+++..+++||+.|+.+.
T Consensus 104 ~~dfi~~lp~el~~~il~~Ld-~~~l~~~~~v~~~w~~~~ 142 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFLD-GRDLLAVRQVCRNWNKLL 142 (537)
T ss_pred ccchhhcccchhcccccccCC-HHHhhhhhhhcchhhhhh
Confidence 445578899999999999999 689999999999999987
No 88
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=73.15 E-value=2.6 Score=22.92 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=11.4
Q ss_pred cceeeccccCCCH-HHHHHHHhcCC
Q 007912 459 LEMLSVAFAGESD-LGLHHVLSGCD 482 (585)
Q Consensus 459 L~~L~l~~~~i~~-~~~~~l~~~~~ 482 (585)
|++|.|....+.+ ..+..++++||
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccCc
Confidence 4555555555432 24555545543
No 89
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=72.01 E-value=1.7 Score=22.38 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=9.6
Q ss_pred cCCEEEeecccCC
Q 007912 508 TMRSLWMSSCSVS 520 (585)
Q Consensus 508 ~L~~L~l~~~~i~ 520 (585)
+|++|++++|+++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4778888888765
No 90
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=69.20 E-value=7.1 Score=35.24 Aligned_cols=39 Identities=8% Similarity=0.244 Sum_probs=32.8
Q ss_pred CCCCCCCCHHHHHHHHhccCChHHHHHHHHHhHHHHHhh
Q 007912 4 KMSYSSLPEDVLEHVFSFVQSDKDRNVISLVCKSWYEIE 42 (585)
Q Consensus 4 ~~~i~~LP~ell~~If~~L~~~~~~~~~~~Vcr~W~~~~ 42 (585)
+..+.+||.|++..|+..|+.++|+..+++|-..-..++
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~ 237 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLS 237 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHH
Confidence 446889999999999999999999999998876555554
No 91
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=59.35 E-value=18 Score=28.49 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=40.1
Q ss_pred CCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeeccc---CCHHHHHHHHhhCCCcEEEEecCCCCCCCCCCCCccEEEE
Q 007912 482 DSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCS---VSFEACKLLGQKMPRLNVEVIDESGPPDSRPELPVKKLYI 558 (585)
Q Consensus 482 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 558 (585)
++=+.++|..=+ ++..+..++..||+|+.+.+-.-- ++......+ .+.+ +..+++.
T Consensus 17 ~nE~~VHlAFRP-SN~Dif~Lv~~CP~lk~iqiP~SY~~t~Sksi~mfL--~mqg--I~LleGD---------------- 75 (131)
T PF08004_consen 17 PNEEIVHLAFRP-SNKDIFSLVERCPNLKAIQIPPSYYKTLSKSIKMFL--EMQG--IELLEGD---------------- 75 (131)
T ss_pred CCceEEEEEecC-cchHHHHHHHhCCCCeEEeCChHHHHHHhHHHHHHH--HhcC--ceeeccc----------------
Confidence 444444554333 333455578888888888765542 333333222 2444 3335554
Q ss_pred EEeccCCCCCCCCceee
Q 007912 559 YRTVTGRRIDMPGFVWN 575 (585)
Q Consensus 559 ~~~~~~~~~~~~~~~~~ 575 (585)
++|+|.|+++|+.+
T Consensus 76 ---VwGHRKDinEYy~i 89 (131)
T PF08004_consen 76 ---VWGHRKDINEYYEI 89 (131)
T ss_pred ---cccccCCCcccccC
Confidence 77999999988643
No 92
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=54.85 E-value=12 Score=20.05 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=11.0
Q ss_pred CCCcEEEcccCCCCCc
Q 007912 157 KNLKELDLWESDVEDP 172 (585)
Q Consensus 157 ~~L~~L~l~~~~~~~~ 172 (585)
++|++|++++|.+...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 5677888877765543
No 93
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=54.85 E-value=12 Score=20.05 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=11.0
Q ss_pred CCCcEEEcccCCCCCc
Q 007912 157 KNLKELDLWESDVEDP 172 (585)
Q Consensus 157 ~~L~~L~l~~~~~~~~ 172 (585)
++|++|++++|.+...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 5677888877765543
No 94
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=50.90 E-value=11 Score=20.47 Aligned_cols=14 Identities=14% Similarity=0.223 Sum_probs=10.4
Q ss_pred ccCCEEEeecccCC
Q 007912 507 ETMRSLWMSSCSVS 520 (585)
Q Consensus 507 ~~L~~L~l~~~~i~ 520 (585)
.+|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 56788888888773
No 95
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=49.87 E-value=18 Score=34.10 Aligned_cols=89 Identities=18% Similarity=0.185 Sum_probs=51.4
Q ss_pred HHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhc---CCCCcEEEcccCCCCCcccccccccCCCCCcccEEEeccccC
Q 007912 121 ESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAAD---CKNLKELDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGS 197 (585)
Q Consensus 121 ~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~---~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 197 (585)
..+..+...=|+++..++++...++...+..+... ....+...+.+....+.....+..+...++.|++|++++.
T Consensus 188 ~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesn-- 265 (353)
T KOG3735|consen 188 SSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESN-- 265 (353)
T ss_pred HHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheecccc--
Confidence 34445554556777777777666666655544433 3445555555555555444445555556667777777766
Q ss_pred cCCHHHHHHHHHhC
Q 007912 198 EVSFSALERLVVRC 211 (585)
Q Consensus 198 ~~~~~~l~~l~~~~ 211 (585)
.|+..++-++...+
T Consensus 266 FItg~gi~a~~~al 279 (353)
T KOG3735|consen 266 FITGLGIMALLRAL 279 (353)
T ss_pred ccccHHHHHHHHHH
Confidence 56666665555443
No 96
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=49.45 E-value=37 Score=32.16 Aligned_cols=94 Identities=15% Similarity=0.160 Sum_probs=62.0
Q ss_pred hhHHHHhhhCCCCcEEecCC--CCCHHHHHHHHhh---ccccceeeccccCCCHHH---HHHHHhcCCCCCeEEeeCCCC
Q 007912 423 VGFGAIVQHCKDLRRLSLSG--LLTDRVFEYIGTY---AKKLEMLSVAFAGESDLG---LHHVLSGCDSLRKLEIMDCPF 494 (585)
Q Consensus 423 ~~~~~~~~~~~~L~~L~l~~--~~~~~~~~~l~~~---~~~L~~L~l~~~~i~~~~---~~~l~~~~~~L~~L~l~~~~~ 494 (585)
..+..+-..-+.++..++++ ++....+..+... ....+...+.+...+|.. +..++..++.|+.|++++|-|
T Consensus 188 ~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFI 267 (353)
T KOG3735|consen 188 SSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFI 267 (353)
T ss_pred HHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheecccccc
Confidence 34455555667899999987 7777777766554 334555666655554433 333445588899999999999
Q ss_pred ChHHHHHHHHhcc---cCCEEEeec
Q 007912 495 GDKALLANAAKLE---TMRSLWMSS 516 (585)
Q Consensus 495 ~~~~~~~~~~~l~---~L~~L~l~~ 516 (585)
+..++.++...+. +|..+.+.+
T Consensus 268 tg~gi~a~~~al~~n~tl~el~~dn 292 (353)
T KOG3735|consen 268 TGLGIMALLRALQSNKSLTELKNDN 292 (353)
T ss_pred ccHHHHHHHHHHhccchhhHhhhhh
Confidence 9988887776665 455554443
No 97
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=41.74 E-value=6 Score=40.18 Aligned_cols=85 Identities=15% Similarity=0.074 Sum_probs=51.3
Q ss_pred hCCCCcEEecCCCCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCC
Q 007912 431 HCKDLRRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMR 510 (585)
Q Consensus 431 ~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 510 (585)
..+.|..|+.+.+ ....+..-...+.+|+.|.+..|.+.+..-+ ++ +-.|.+||++.|+++.-.+ -+.++..|+
T Consensus 164 ~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~lp~E-l~--~LpLi~lDfScNkis~iPv--~fr~m~~Lq 237 (722)
T KOG0532|consen 164 LLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEE-LC--SLPLIRLDFSCNKISYLPV--DFRKMRHLQ 237 (722)
T ss_pred cchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhhCCHH-Hh--CCceeeeecccCceeecch--hhhhhhhhe
Confidence 3456667766552 1111111112345577777777765443322 21 3458899999988776543 356788899
Q ss_pred EEEeecccCCH
Q 007912 511 SLWMSSCSVSF 521 (585)
Q Consensus 511 ~L~l~~~~i~~ 521 (585)
+|-|.+|.+..
T Consensus 238 ~l~LenNPLqS 248 (722)
T KOG0532|consen 238 VLQLENNPLQS 248 (722)
T ss_pred eeeeccCCCCC
Confidence 99999998643
No 98
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=39.05 E-value=11 Score=38.47 Aligned_cols=127 Identities=13% Similarity=0.125 Sum_probs=72.9
Q ss_pred CCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCCCCCHHHHHHHH
Q 007912 374 KLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSGLLTDRVFEYIG 453 (585)
Q Consensus 374 ~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 453 (585)
-|+.|....++++...... ...+.|..|+.+.++. . .+..-+..+.+|+.|.+..+--......++
T Consensus 144 pLkvli~sNNkl~~lp~~i--g~~~tl~~ld~s~nei-----~-------slpsql~~l~slr~l~vrRn~l~~lp~El~ 209 (722)
T KOG0532|consen 144 PLKVLIVSNNKLTSLPEEI--GLLPTLAHLDVSKNEI-----Q-------SLPSQLGYLTSLRDLNVRRNHLEDLPEELC 209 (722)
T ss_pred cceeEEEecCccccCCccc--ccchhHHHhhhhhhhh-----h-------hchHHhhhHHHHHHHHHhhhhhhhCCHHHh
Confidence 4677766656655222111 1346777777665432 1 112223344566666665421112223333
Q ss_pred hhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHH-HHHhcccCCEEEeeccc
Q 007912 454 TYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLA-NAAKLETMRSLWMSSCS 518 (585)
Q Consensus 454 ~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 518 (585)
.+| |..|++++|+|+-..+.+ ..++.|++|-|.+|++..-...- +.....-.++|+..-|+
T Consensus 210 -~Lp-Li~lDfScNkis~iPv~f--r~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 210 -SLP-LIRLDFSCNKISYLPVDF--RKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred -CCc-eeeeecccCceeecchhh--hhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 344 999999999987766655 46799999999999775544331 22334456788887774
No 99
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=29.79 E-value=8.2 Score=31.01 Aligned_cols=61 Identities=20% Similarity=0.318 Sum_probs=23.4
Q ss_pred hhhCCCCcEEecCCCCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCC
Q 007912 429 VQHCKDLRRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDC 492 (585)
Q Consensus 429 ~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 492 (585)
+..+++|+.+.+.+.+...+-.. ...+++|+.+.+.+ .+...+-..+ ..+++|+.+++..+
T Consensus 31 F~~~~~l~~i~~~~~~~~i~~~~-F~~~~~l~~i~~~~-~~~~i~~~~F-~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 31 FSNCTSLKSINFPNNLTSIGDNA-FSNCKSLESITFPN-NLKSIGDNAF-SNCTNLKNIDIPSN 91 (129)
T ss_dssp TTT-TT-SEEEESSTTSCE-TTT-TTT-TT-EEEEETS-TT-EE-TTTT-TT-TTECEEEETTT
T ss_pred cccccccccccccccccccceee-eecccccccccccc-cccccccccc-cccccccccccCcc
Confidence 45566677777655222111111 12344566666644 2211111111 34566666666443
No 100
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=26.15 E-value=34 Score=18.66 Aligned_cols=14 Identities=14% Similarity=0.323 Sum_probs=9.1
Q ss_pred ccCCEEEeecccCC
Q 007912 507 ETMRSLWMSSCSVS 520 (585)
Q Consensus 507 ~~L~~L~l~~~~i~ 520 (585)
++|+.|++++|+++
T Consensus 2 ~~L~~L~vs~N~Lt 15 (26)
T smart00364 2 PSLKELNVSNNQLT 15 (26)
T ss_pred cccceeecCCCccc
Confidence 35677777777653
Done!