Query 007912
Match_columns 585
No_of_seqs 356 out of 3631
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 13:34:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007912.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007912hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 2E-63 6.7E-68 525.8 60.0 583 2-584 1-584 (594)
2 3ogk_B Coronatine-insensitive 100.0 1.2E-58 4E-63 488.9 47.8 564 8-578 14-590 (592)
3 3ogk_B Coronatine-insensitive 100.0 1.4E-30 5E-35 274.3 34.0 416 98-546 65-527 (592)
4 2p1m_B Transport inhibitor res 100.0 2.3E-30 8E-35 273.0 35.0 412 60-518 98-542 (594)
5 1z7x_W Ribonuclease inhibitor; 100.0 2.7E-28 9.1E-33 248.8 35.7 409 67-537 3-460 (461)
6 1z7x_W Ribonuclease inhibitor; 100.0 3.1E-27 1E-31 240.9 31.1 380 106-533 3-424 (461)
7 2ast_B S-phase kinase-associat 99.9 5.3E-25 1.8E-29 214.3 22.4 169 4-222 6-178 (336)
8 3t6q_A CD180 antigen; protein- 99.9 2E-24 6.7E-29 228.0 -7.0 86 103-195 78-163 (606)
9 3rgz_A Protein brassinosteroid 99.9 1.6E-24 5.4E-29 233.8 -9.8 404 103-542 123-548 (768)
10 3t6q_A CD180 antigen; protein- 99.9 2.7E-24 9.2E-29 227.0 -8.6 155 68-247 34-190 (606)
11 3rgz_A Protein brassinosteroid 99.8 1.4E-24 4.7E-29 234.3 -13.9 408 103-542 97-524 (768)
12 4fmz_A Internalin; leucine ric 99.8 4.8E-20 1.7E-24 180.1 16.4 105 396-520 241-346 (347)
13 3vq2_A TLR4, TOLL-like recepto 99.8 9.8E-23 3.4E-27 215.0 -3.1 227 288-544 326-557 (606)
14 2z81_A CD282 antigen, TOLL-lik 99.8 1.2E-21 4E-26 204.2 3.7 415 66-543 25-508 (549)
15 1o6v_A Internalin A; bacterial 99.8 6.3E-20 2.2E-24 186.5 15.2 323 103-521 65-389 (466)
16 2ca6_A RAN GTPase-activating p 99.8 8E-19 2.7E-23 173.9 21.6 212 288-540 92-338 (386)
17 3vq2_A TLR4, TOLL-like recepto 99.8 4.5E-23 1.5E-27 217.6 -11.1 114 429-545 420-534 (606)
18 2z63_A TOLL-like receptor 4, v 99.8 4.2E-23 1.4E-27 216.3 -11.5 110 104-222 50-159 (570)
19 2z81_A CD282 antigen, TOLL-lik 99.8 2.1E-20 7.3E-25 194.7 8.5 401 62-521 45-511 (549)
20 2z7x_B TOLL-like receptor 1, v 99.8 3.3E-21 1.1E-25 199.3 0.1 158 337-520 322-481 (520)
21 2z7x_B TOLL-like receptor 1, v 99.8 4.3E-21 1.5E-25 198.4 0.3 158 371-544 322-480 (520)
22 1ziw_A TOLL-like receptor 3; i 99.8 4.5E-21 1.5E-25 205.1 -0.0 89 455-545 534-622 (680)
23 1o6v_A Internalin A; bacterial 99.8 1.5E-19 5.3E-24 183.6 11.0 339 105-542 45-385 (466)
24 2ca6_A RAN GTPase-activating p 99.8 5.6E-18 1.9E-22 167.8 20.1 190 288-517 120-340 (386)
25 4fmz_A Internalin; leucine ric 99.8 5.5E-18 1.9E-22 165.4 19.2 282 103-495 63-346 (347)
26 2ast_B S-phase kinase-associat 99.8 6.9E-18 2.3E-22 164.0 19.3 203 288-536 91-300 (336)
27 2z63_A TOLL-like receptor 4, v 99.8 8.1E-22 2.8E-26 206.6 -11.2 134 106-249 28-162 (570)
28 3v47_A TOLL-like receptor 5B a 99.8 3E-20 1E-24 188.8 -0.1 365 106-521 30-409 (455)
29 3j0a_A TOLL-like receptor 5; m 99.7 3.7E-21 1.3E-25 209.7 -10.6 16 395-410 423-438 (844)
30 4eco_A Uncharacterized protein 99.7 1.4E-20 4.7E-25 198.4 -6.7 86 155-246 247-340 (636)
31 3j0a_A TOLL-like receptor 5; m 99.7 1.3E-20 4.4E-25 205.5 -8.9 399 66-520 23-464 (844)
32 3o6n_A APL1; leucine-rich repe 99.7 7.9E-19 2.7E-23 174.2 4.2 322 105-535 44-367 (390)
33 4ecn_A Leucine-rich repeat pro 99.7 1.1E-19 3.7E-24 194.8 -2.2 14 103-116 344-358 (876)
34 3v47_A TOLL-like receptor 5B a 99.7 5.8E-19 2E-23 179.3 0.4 354 131-545 30-408 (455)
35 1ziw_A TOLL-like receptor 3; i 99.7 1.9E-19 6.5E-24 192.5 -3.5 218 287-520 402-622 (680)
36 3oja_B Anopheles plasmodium-re 99.7 6.6E-18 2.3E-22 176.9 4.5 320 105-533 50-371 (597)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.3E-18 4.3E-23 181.4 -1.2 134 371-520 375-510 (562)
38 4eco_A Uncharacterized protein 99.7 1.6E-19 5.6E-24 190.1 -8.1 350 153-542 202-597 (636)
39 3bz5_A Internalin-J, INLJ; leu 99.7 2.2E-17 7.5E-22 166.2 7.3 146 63-249 38-183 (457)
40 4ecn_A Leucine-rich repeat pro 99.7 4.1E-19 1.4E-23 190.3 -6.0 329 153-519 444-818 (876)
41 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.2E-17 4.2E-22 174.0 0.3 423 65-544 29-509 (562)
42 3goz_A Leucine-rich repeat-con 99.6 1.6E-15 5.6E-20 148.4 15.0 217 291-523 52-300 (362)
43 3bz5_A Internalin-J, INLJ; leu 99.6 3.1E-16 1.1E-20 157.9 9.1 200 104-347 40-241 (457)
44 3o6n_A APL1; leucine-rich repe 99.6 4.4E-17 1.5E-21 161.6 2.9 323 65-510 43-367 (390)
45 3goz_A Leucine-rich repeat-con 99.6 8.8E-15 3E-19 143.2 19.1 243 282-543 14-295 (362)
46 2id5_A Lingo-1, leucine rich r 99.6 5.2E-17 1.8E-21 165.8 2.8 176 131-347 32-208 (477)
47 4g8a_A TOLL-like receptor 4; l 99.6 2.4E-18 8.3E-23 182.8 -9.5 112 103-223 73-184 (635)
48 2id5_A Lingo-1, leucine rich r 99.6 2.8E-17 9.7E-22 167.8 -2.1 201 106-347 32-232 (477)
49 3oja_B Anopheles plasmodium-re 99.6 4.1E-16 1.4E-20 163.3 2.8 300 100-507 69-370 (597)
50 1jl5_A Outer protein YOPM; leu 99.5 4.4E-15 1.5E-19 149.3 -0.6 115 106-246 91-205 (454)
51 3g06_A SSPH2 (leucine-rich rep 99.4 1.6E-13 5.5E-18 142.2 10.2 65 456-527 240-304 (622)
52 1jl5_A Outer protein YOPM; leu 99.4 2.1E-14 7.2E-19 144.4 1.0 327 102-521 30-371 (454)
53 3un9_A NLR family member X1; l 99.4 1.8E-12 6.2E-17 126.2 14.4 146 374-529 102-261 (372)
54 3un9_A NLR family member X1; l 99.4 6.4E-12 2.2E-16 122.3 16.9 194 289-522 71-285 (372)
55 1xku_A Decorin; proteoglycan, 99.4 1.1E-13 3.6E-18 133.8 4.1 88 429-518 236-330 (330)
56 4g8a_A TOLL-like receptor 4; l 99.4 5E-15 1.7E-19 157.2 -5.7 134 106-249 52-186 (635)
57 3o53_A Protein LRIM1, AGAP0063 99.4 2E-14 6.8E-19 137.8 -1.7 82 432-517 190-272 (317)
58 2z80_A TOLL-like receptor 2, v 99.4 3.1E-14 1E-18 139.0 -0.4 91 430-521 219-315 (353)
59 2z80_A TOLL-like receptor 2, v 99.4 1.4E-13 4.7E-18 134.3 4.1 259 157-497 52-316 (353)
60 3e4g_A ATP synthase subunit S, 99.4 1.1E-12 3.6E-17 110.5 8.1 103 434-538 62-173 (176)
61 2ft3_A Biglycan; proteoglycan, 99.4 3.8E-14 1.3E-18 137.0 -1.5 87 429-517 237-330 (332)
62 1xku_A Decorin; proteoglycan, 99.3 1.4E-13 4.7E-18 133.0 1.6 64 430-493 260-330 (330)
63 3o53_A Protein LRIM1, AGAP0063 99.3 1.1E-13 3.7E-18 132.7 -1.7 124 396-536 142-266 (317)
64 1wwl_A Monocyte differentiatio 99.3 7.3E-14 2.5E-18 133.6 -3.5 58 457-521 253-310 (312)
65 2z66_A Variable lymphocyte rec 99.3 5.6E-14 1.9E-18 134.2 -6.3 64 430-495 196-261 (306)
66 3g06_A SSPH2 (leucine-rich rep 99.3 1.9E-11 6.6E-16 126.7 12.0 62 432-500 240-302 (622)
67 3oja_A Leucine-rich immune mol 99.2 1.9E-13 6.6E-18 138.8 -3.7 79 432-514 190-269 (487)
68 4fcg_A Uncharacterized protein 99.2 5E-12 1.7E-16 121.5 5.1 226 65-347 79-309 (328)
69 2ft3_A Biglycan; proteoglycan, 99.2 8.6E-14 2.9E-18 134.6 -7.4 288 107-493 34-331 (332)
70 4glp_A Monocyte differentiatio 99.2 9.7E-12 3.3E-16 118.7 6.8 184 288-521 115-308 (310)
71 1ozn_A Reticulon 4 receptor; N 99.2 5.7E-13 2E-17 125.7 -1.7 205 289-519 31-237 (285)
72 3zyi_A Leucine-rich repeat-con 99.2 5.8E-13 2E-17 134.5 -2.0 55 159-223 56-110 (452)
73 3e4g_A ATP synthase subunit S, 99.2 4.5E-11 1.5E-15 100.6 8.8 102 398-511 61-171 (176)
74 3zyj_A Leucine-rich repeat-con 99.2 7.4E-13 2.5E-17 133.3 -2.6 56 158-223 44-99 (440)
75 1h6u_A Internalin H; cell adhe 99.2 1E-11 3.5E-16 118.2 5.4 190 289-521 40-231 (308)
76 2ra8_A Uncharacterized protein 99.2 1.6E-10 5.6E-15 111.3 13.4 171 331-541 164-340 (362)
77 1wwl_A Monocyte differentiatio 99.2 5.5E-13 1.9E-17 127.4 -4.9 109 430-545 198-309 (312)
78 2z66_A Variable lymphocyte rec 99.2 5.1E-13 1.7E-17 127.5 -5.4 129 106-244 28-158 (306)
79 1ogq_A PGIP-2, polygalacturona 99.2 2.4E-13 8.4E-18 129.9 -7.9 85 131-223 50-136 (313)
80 3oja_A Leucine-rich immune mol 99.2 3.2E-12 1.1E-16 129.8 -0.3 209 287-535 55-265 (487)
81 4fcg_A Uncharacterized protein 99.2 2.3E-12 7.7E-17 123.9 -1.3 223 104-380 79-308 (328)
82 4glp_A Monocyte differentiatio 99.1 2.2E-12 7.7E-17 123.1 -2.8 133 396-545 167-307 (310)
83 3zyi_A Leucine-rich repeat-con 99.1 5.8E-12 2E-16 127.2 -0.7 133 106-248 75-208 (452)
84 3zyj_A Leucine-rich repeat-con 99.1 5.5E-12 1.9E-16 126.9 -1.2 132 106-247 64-196 (440)
85 1ogq_A PGIP-2, polygalacturona 99.1 2E-12 6.9E-17 123.5 -4.6 86 103-195 73-159 (313)
86 1h6u_A Internalin H; cell adhe 99.1 5E-10 1.7E-14 106.5 10.6 102 103-222 60-161 (308)
87 1ozn_A Reticulon 4 receptor; N 99.1 3.5E-11 1.2E-15 113.4 2.1 201 106-348 32-234 (285)
88 1io0_A Tropomodulin; LRR prote 99.0 6.7E-09 2.3E-13 90.2 16.0 125 390-523 28-167 (185)
89 2ra8_A Uncharacterized protein 99.0 8E-10 2.7E-14 106.5 10.8 137 392-542 166-317 (362)
90 4ezg_A Putative uncharacterize 99.0 3.1E-10 1.1E-14 100.2 4.0 108 396-521 86-195 (197)
91 1h6t_A Internalin B; cell adhe 98.9 9.7E-10 3.3E-14 103.5 7.2 170 288-522 44-215 (291)
92 4ezg_A Putative uncharacterize 98.9 9.7E-10 3.3E-14 97.0 6.0 106 104-223 42-147 (197)
93 3rfs_A Internalin B, repeat mo 98.9 5.2E-11 1.8E-15 111.2 -2.7 53 289-347 40-93 (272)
94 2z62_A TOLL-like receptor 4, v 98.9 2.1E-11 7.2E-16 114.3 -6.0 204 290-520 28-237 (276)
95 1io0_A Tropomodulin; LRR prote 98.9 3.1E-08 1E-12 86.0 13.0 127 94-223 24-162 (185)
96 3rfs_A Internalin B, repeat mo 98.8 1.2E-09 4E-14 102.0 4.1 37 288-325 179-215 (272)
97 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 1.8E-09 6.2E-14 71.5 3.9 40 3-43 5-44 (53)
98 1p9a_G Platelet glycoprotein I 98.8 2E-10 6.9E-15 108.1 -1.3 110 396-520 98-208 (290)
99 2z62_A TOLL-like receptor 4, v 98.8 2.8E-10 9.6E-15 106.6 -0.8 36 289-325 199-234 (276)
100 1m9s_A Internalin B; cell inva 98.8 2.3E-09 7.9E-14 111.0 5.9 84 429-521 127-211 (605)
101 2o6q_A Variable lymphocyte rec 98.8 1.7E-10 6E-15 107.5 -3.5 179 290-519 37-217 (270)
102 1h6t_A Internalin B; cell adhe 98.8 1.4E-08 4.8E-13 95.5 8.5 100 105-222 45-144 (291)
103 2je0_A Acidic leucine-rich nuc 98.7 1.1E-09 3.7E-14 91.9 0.2 83 431-514 62-147 (149)
104 2ell_A Acidic leucine-rich nuc 98.7 1E-09 3.6E-14 94.1 -0.2 109 396-519 47-159 (168)
105 2xwt_C Thyrotropin receptor; s 98.7 1.7E-10 5.7E-15 105.6 -6.1 196 290-517 31-236 (239)
106 2je0_A Acidic leucine-rich nuc 98.7 3.2E-09 1.1E-13 88.9 1.7 127 397-537 16-145 (149)
107 2o6q_A Variable lymphocyte rec 98.7 3E-09 1E-13 99.1 1.1 178 106-325 37-215 (270)
108 1p9a_G Platelet glycoprotein I 98.7 3.4E-09 1.2E-13 99.6 1.2 80 106-195 31-110 (290)
109 1m9s_A Internalin B; cell inva 98.7 3E-08 1E-12 102.7 8.2 100 105-222 42-141 (605)
110 2xwt_C Thyrotropin receptor; s 98.6 2E-09 6.9E-14 98.3 -1.9 128 107-245 32-165 (239)
111 2ell_A Acidic leucine-rich nuc 98.6 2.3E-09 8E-14 91.9 -1.7 132 397-542 23-157 (168)
112 3sb4_A Hypothetical leucine ri 98.6 3.5E-08 1.2E-12 94.8 6.3 33 315-347 202-234 (329)
113 3m19_A Variable lymphocyte rec 98.6 2.2E-09 7.7E-14 98.8 -2.2 91 429-522 103-194 (251)
114 1xeu_A Internalin C; cellular 98.6 1.5E-08 5.2E-13 93.7 3.4 104 396-522 83-187 (263)
115 3m19_A Variable lymphocyte rec 98.6 1.2E-08 4E-13 93.9 1.2 107 106-222 35-141 (251)
116 1pgv_A TMD-1, tropomodulin TMD 98.5 9.3E-07 3.2E-11 75.9 12.1 125 387-520 30-170 (197)
117 1xeu_A Internalin C; cellular 98.5 2.2E-07 7.6E-12 85.8 7.9 60 105-171 40-99 (263)
118 1dce_A Protein (RAB geranylger 98.5 5E-09 1.7E-13 107.9 -4.3 122 398-537 441-565 (567)
119 3sb4_A Hypothetical leucine ri 98.4 2.5E-08 8.6E-13 95.8 0.2 37 184-223 24-60 (329)
120 1a9n_A U2A', U2A'; complex (nu 98.4 3.9E-08 1.3E-12 84.8 0.6 111 397-522 41-155 (176)
121 1pgv_A TMD-1, tropomodulin TMD 98.4 3.3E-06 1.1E-10 72.4 12.2 128 94-222 29-167 (197)
122 1ds9_A Outer arm dynein; leuci 98.4 8.1E-08 2.8E-12 84.6 2.1 87 429-520 66-153 (198)
123 3cvr_A Invasion plasmid antige 98.3 1.4E-07 4.7E-12 96.6 1.3 129 374-529 121-252 (571)
124 1a9n_A U2A', U2A'; complex (nu 98.3 1.8E-07 6.1E-12 80.6 1.6 110 105-222 41-150 (176)
125 2v9t_B SLIT homolog 2 protein 98.3 1.9E-08 6.5E-13 90.2 -4.9 110 396-519 54-164 (220)
126 2v70_A SLIT-2, SLIT homolog 2 98.3 2.8E-08 9.7E-13 89.1 -3.9 110 396-519 55-165 (220)
127 2o6s_A Variable lymphocyte rec 98.3 7.5E-08 2.6E-12 85.6 -1.1 87 430-519 73-160 (208)
128 3e6j_A Variable lymphocyte rec 98.3 1.3E-07 4.5E-12 85.4 0.3 133 372-520 39-172 (229)
129 1ds9_A Outer arm dynein; leuci 98.2 1.4E-07 4.8E-12 83.0 -0.0 109 396-521 68-186 (198)
130 2xot_A Amphoterin-induced prot 98.1 1.1E-07 3.8E-12 92.5 -3.2 161 337-520 37-202 (361)
131 2v9t_B SLIT homolog 2 protein 98.1 1.9E-07 6.5E-12 83.7 -1.7 132 398-544 32-164 (220)
132 2o6s_A Variable lymphocyte rec 98.1 1.4E-06 4.8E-11 77.3 3.9 84 131-223 28-111 (208)
133 2xot_A Amphoterin-induced prot 98.1 7.1E-08 2.4E-12 93.9 -5.1 176 293-495 21-202 (361)
134 3cvr_A Invasion plasmid antige 98.0 2.8E-06 9.5E-11 87.0 4.7 136 66-249 58-193 (571)
135 3e6j_A Variable lymphocyte rec 98.0 4.3E-06 1.5E-10 75.3 4.5 84 131-223 40-123 (229)
136 2e31_A FBS1, F-box only protei 98.0 2.9E-06 9.9E-11 77.4 3.2 38 4-42 48-86 (297)
137 2o6r_A Variable lymphocyte rec 98.0 1.4E-06 4.8E-11 75.0 0.8 109 398-520 28-137 (177)
138 2v70_A SLIT-2, SLIT homolog 2 97.9 5E-07 1.7E-11 80.9 -2.5 130 107-245 33-162 (220)
139 4ay9_X Follicle-stimulating ho 97.9 1.2E-07 4.1E-12 91.8 -7.5 15 288-302 200-214 (350)
140 2wfh_A SLIT homolog 2 protein 97.8 2.9E-06 1E-10 74.0 0.3 107 398-519 31-138 (193)
141 3l2o_B F-box only protein 4; s 97.8 5.5E-06 1.9E-10 74.5 1.9 36 6-42 4-39 (312)
142 1w8a_A SLIT protein; signaling 97.8 2E-06 6.7E-11 75.2 -1.3 89 429-520 50-139 (192)
143 4ay9_X Follicle-stimulating ho 97.8 5.3E-07 1.8E-11 87.3 -5.5 82 131-222 30-114 (350)
144 4b8c_D Glucose-repressible alc 97.7 3.3E-06 1.1E-10 89.8 -2.1 61 456-520 269-329 (727)
145 1dce_A Protein (RAB geranylger 97.6 5.9E-05 2E-09 77.5 6.2 57 289-345 507-566 (567)
146 1w8a_A SLIT protein; signaling 97.6 2.1E-06 7.3E-11 74.9 -4.1 109 434-545 30-139 (192)
147 2wfh_A SLIT homolog 2 protein 97.5 2.1E-05 7.3E-10 68.5 1.1 107 106-223 31-137 (193)
148 2o6r_A Variable lymphocyte rec 97.5 1.6E-05 5.5E-10 68.3 0.3 108 106-223 28-135 (177)
149 4b8c_D Glucose-repressible alc 97.5 4E-05 1.4E-09 81.5 3.1 113 152-305 219-331 (727)
150 3v7d_B Cell division control p 97.5 3E-05 1E-09 78.2 2.1 41 2-43 10-50 (464)
151 4fs7_A Uncharacterized protein 97.4 6.1E-06 2.1E-10 81.2 -3.5 13 103-115 68-80 (394)
152 3rw6_A Nuclear RNA export fact 97.4 0.00012 4.1E-09 66.5 4.8 82 454-536 167-255 (267)
153 2r9u_A Variable lymphocyte rec 97.4 1.7E-05 5.8E-10 67.8 -1.4 85 433-520 33-118 (174)
154 3g39_A Variable lymphocyte rec 97.3 1.7E-05 5.7E-10 67.6 -1.4 85 433-520 30-115 (170)
155 1p22_A F-BOX/WD-repeat protein 97.3 5.7E-05 2E-09 75.4 1.8 41 1-42 5-49 (435)
156 4fdw_A Leucine rich hypothetic 97.3 4.4E-05 1.5E-09 74.8 0.7 60 429-492 296-355 (401)
157 3rw6_A Nuclear RNA export fact 97.3 0.00025 8.6E-09 64.4 5.2 82 430-513 167-257 (267)
158 4fs7_A Uncharacterized protein 97.2 1.1E-05 3.7E-10 79.5 -5.1 56 456-517 319-376 (394)
159 4fdw_A Leucine rich hypothetic 97.2 5.5E-05 1.9E-09 74.1 -0.3 61 429-492 319-380 (401)
160 2ovr_B FBW7, F-BOX/WD repeat p 97.1 0.00023 7.8E-09 71.2 4.1 39 3-42 15-53 (445)
161 3g39_A Variable lymphocyte rec 97.0 0.00021 7.1E-09 60.7 1.9 85 398-495 30-115 (170)
162 2r9u_A Variable lymphocyte rec 97.0 0.00023 7.9E-09 60.6 1.9 85 398-495 33-118 (174)
163 4gt6_A Cell surface protein; l 96.4 0.00074 2.5E-08 66.2 1.3 10 290-299 182-191 (394)
164 2ifg_A High affinity nerve gro 96.4 0.00024 8.3E-09 68.4 -2.2 61 456-519 55-115 (347)
165 4gt6_A Cell surface protein; l 96.2 0.0028 9.7E-08 62.0 3.8 83 429-518 284-368 (394)
166 2ifg_A High affinity nerve gro 95.2 0.0033 1.1E-07 60.3 0.0 63 457-521 31-94 (347)
167 3rfe_A Platelet glycoprotein I 77.2 0.76 2.6E-05 36.2 1.2 35 458-493 32-66 (130)
168 4h09_A Hypothetical leucine ri 75.4 0.41 1.4E-05 46.2 -1.1 82 429-516 259-342 (379)
169 4h09_A Hypothetical leucine ri 62.8 2.6 8.8E-05 40.4 1.6 123 103-243 214-340 (379)
170 3rfe_A Platelet glycoprotein I 56.3 12 0.0004 29.3 4.1 14 158-171 32-45 (130)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=2e-63 Score=525.80 Aligned_cols=583 Identities=80% Similarity=1.338 Sum_probs=510.5
Q ss_pred CcCCCCCCCCHHHHHHHHhccCChHHHHHHHHHhHHHHHhhccccceeEecCcccCChhHHHhhCCCceEEEecCCCCCC
Q 007912 2 LKKMSYSSLPEDVLEHVFSFVQSDKDRNVISLVCKSWYEIERWCRRRIFVGNCYAVSPRMAIRRFPEVRSVELKGKPHFA 81 (585)
Q Consensus 2 ~~~~~i~~LP~ell~~If~~L~~~~~~~~~~~Vcr~W~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~ 81 (585)
|+++.+++||+|+|.+||+||+..+|+.++++|||+|+++..+.+..+.+..++...+..+..+|+++++|++++++.+.
T Consensus 1 ~~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 80 (594)
T 2p1m_B 1 MQKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFA 80 (594)
T ss_dssp ---------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGG
T ss_pred CcccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchh
Confidence 56788999999999999999997789999999999999998888889999999888899999999999999999999888
Q ss_pred CCCCCcCCCCCcchhHHHHHHccCCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcE
Q 007912 82 DFNLVPEGWGGYVYPWIRAMAGGYPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKE 161 (585)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~ 161 (585)
++...+..|++...+++..+...+++|++|+++++.+++..+..+...+++|++|++.+|..++..++..+..+|++|++
T Consensus 81 ~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~ 160 (594)
T 2p1m_B 81 DFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKE 160 (594)
T ss_dssp GGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCE
T ss_pred hcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCE
Confidence 88889999999999999999999999999999999999999999987899999999999988888889999889999999
Q ss_pred EEcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHHHHHhhCCCceEE
Q 007912 162 LDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVEL 241 (585)
Q Consensus 162 L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 241 (585)
|++++|.+++....++..+...+++|++|+++++...++...+..+...+++|++|++++|....+++..+..+++|++|
T Consensus 161 L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 240 (594)
T 2p1m_B 161 LDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL 240 (594)
T ss_dssp EECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEE
T ss_pred EeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEc
Confidence 99999998888888888888899999999999875458888899998899999999999998888899999999999999
Q ss_pred cCccccCCCCchhhhhhhhhhhcccccccccCccccCcCchhhHhhcCCCCCEEEeecccCCchhHHHHHhcCCCCcEEe
Q 007912 242 GTGTYSADLRPDIFSNLAGAFSGCKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLW 321 (585)
Q Consensus 242 ~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~ 321 (585)
.++.+.....+..+..+...+..|++|+.+++++......++.+...+++|++|++++|.+++..+..++..+++|+.|.
T Consensus 241 ~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~ 320 (594)
T 2p1m_B 241 GTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLW 320 (594)
T ss_dssp ECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEE
T ss_pred ccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEe
Confidence 99887765555667777778899999999977777777777777778999999999999988888888899999999999
Q ss_pred cccccchhHHHHHHhcCCCCceEEeccCCCCCCCCCCCcchHHHHHHHhCCCCCceehhcccCCcHHHHHHHHhhCCCCc
Q 007912 322 VLDYIEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSLTEQGLVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMI 401 (585)
Q Consensus 322 l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~ 401 (585)
+.+++++.++..+...+++|++|++.++.+....++..+++.++..+..++++|++|...|+.+++..+..+...+|+|+
T Consensus 321 l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~ 400 (594)
T 2p1m_B 321 VLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMT 400 (594)
T ss_dssp EEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCC
T ss_pred CcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcc
Confidence 99998888899998889999999996543221125678999999999888999999998999999999999998899999
Q ss_pred eeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCCCCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcC
Q 007912 402 RFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGC 481 (585)
Q Consensus 402 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~ 481 (585)
.|++.+.+...|..++..+.+.++..++..+++|+.|++++.+++.++..+...+++|+.|++++|.+++.++..++.++
T Consensus 401 ~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 480 (594)
T 2p1m_B 401 RFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC 480 (594)
T ss_dssp EEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHC
T ss_pred eeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcC
Confidence 99999655445777886666788999999999999999999999999999998899999999999999999999988899
Q ss_pred CCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCHHHHHHHHhhCCCcEEEEecCCCCCC-CCCCCCccEEEEEE
Q 007912 482 DSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFEACKLLGQKMPRLNVEVIDESGPPD-SRPELPVKKLYIYR 560 (585)
Q Consensus 482 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (585)
++|++|++++|.+++.++..+...+++|+.|++++|+++.++++.++..+|++++.++...+..+ ..+.+.+++++.|+
T Consensus 481 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (594)
T 2p1m_B 481 DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVFIYR 560 (594)
T ss_dssp TTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGGGSCTTSBCSEEEEEE
T ss_pred CCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCccccccccchhhhhhhhh
Confidence 99999999999999998887888899999999999999999999999999999999998764332 34667889999999
Q ss_pred eccCCCCCCCCceeecCCCCcCCC
Q 007912 561 TVTGRRIDMPGFVWNVGEDSALRL 584 (585)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~ 584 (585)
+++++|.|+|.+++++++.++.+.
T Consensus 561 ~~~~~~~~~p~~~~~l~~~~~~~~ 584 (594)
T 2p1m_B 561 TVAGPRFDMPGFVWNMDQDSTMRF 584 (594)
T ss_dssp CSSCSCSCCCTTEEEC--------
T ss_pred ccCCCCCCCCCceEeccCCCCCcc
Confidence 999999999999999999988765
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=1.2e-58 Score=488.90 Aligned_cols=564 Identities=31% Similarity=0.584 Sum_probs=485.7
Q ss_pred CCCCHHHHHHHHhccCChHHHHHHHHHhHHHHHhhccccceeEecCcccCChhHHHhhCCCceEEEecCCCCCCCCCCCc
Q 007912 8 SSLPEDVLEHVFSFVQSDKDRNVISLVCKSWYEIERWCRRRIFVGNCYAVSPRMAIRRFPEVRSVELKGKPHFADFNLVP 87 (585)
Q Consensus 8 ~~LP~ell~~If~~L~~~~~~~~~~~Vcr~W~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~~~~ 87 (585)
.+||+|+|.+||+||+..+|+.++++|||+|+++..+.++.+....++...+..+..+++++++|++++++.+.+++.+|
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 93 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIP 93 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSC
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhccccc
Confidence 47999999999999943899999999999999999888888888888888889999999999999999999999999999
Q ss_pred CCCCCcchhHHHHHHccCCCCcEEEecccccChHHHHHHHHhCCC-CcEEeecccCCCCHHHHHHHHhcCCCCcEEEccc
Q 007912 88 EGWGGYVYPWIRAMAGGYPWLEELKLKRMVVTDESLELIAKSFKN-FKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWE 166 (585)
Q Consensus 88 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~-L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 166 (585)
..|++...+++..+...+++|++|+|+++.+++..+..+...+++ |++|++.+|..++..++..+...|++|++|++++
T Consensus 94 ~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 173 (592)
T 3ogk_B 94 ENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEE 173 (592)
T ss_dssp TTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTT
T ss_pred ccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcc
Confidence 999999999999999999999999999999999999888876777 9999999998788888988888999999999999
Q ss_pred CCCCCcccccccccCCCCCcccEEEeccccCc-CCHHHHHHHHHhCCCCceEEeCCCCChHHHHHHHhhCCCceEEcCcc
Q 007912 167 SDVEDPSGNWLSKFPDTCTSLVSLNIACLGSE-VSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVELGTGT 245 (585)
Q Consensus 167 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 245 (585)
|.+.+.+..++..+...+++|++|+++++... ++...+..+...+++|++|+++++. +.+++..+..+++|++|.++.
T Consensus 174 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 174 SSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp CEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECB
T ss_pred ccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccc
Confidence 99887777777777778999999999977422 4578888899999999999999975 566788899999999999976
Q ss_pred ccCCCCchhhhhhhhhhhcccccccccCccccCcCchhhHhhcCCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc
Q 007912 246 YSADLRPDIFSNLAGAFSGCKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY 325 (585)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 325 (585)
+..... .......+..+++|+.+. ++......++.+...+++|++|++++|.+++..+..++..+++|+.|++..+
T Consensus 253 ~~~~~~---~~~~~~~l~~~~~L~~L~-l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~ 328 (592)
T 3ogk_B 253 LNEDIG---MPEKYMNLVFPRKLCRLG-LSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV 328 (592)
T ss_dssp CCCCTT---CTTSSSCCCCCTTCCEEE-ETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred cccccc---hHHHHHHhhccccccccC-ccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc
Confidence 543321 112223345567777763 3334556677777789999999999999888888888899999999999988
Q ss_pred cchhHHHHHHhcCCCCceEEecc--CCCCCCCCCCCcchHHHHHHHhCCCCCceehhcccCCcHHHHHHHHhhCCCCcee
Q 007912 326 IEDSGLEALAATCKDLRELRVFP--SEPFGDEPNVSLTEQGLVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRF 403 (585)
Q Consensus 326 ~~~~~~~~l~~~~~~L~~L~l~~--~~~~~~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L 403 (585)
+.+.++..+...+++|++|++.. ..++.++.|+.+++.++..+...+++|++|.++|..+++..+..+...+++|+.|
T Consensus 329 ~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L 408 (592)
T 3ogk_B 329 IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDF 408 (592)
T ss_dssp GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEE
T ss_pred cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEE
Confidence 88999999988999999999993 2222222378999999999888899999998899999999999999889999999
Q ss_pred eeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecC---CCCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhc
Q 007912 404 RLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLS---GLLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSG 480 (585)
Q Consensus 404 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~ 480 (585)
++.+++ .|..++..|.++++..++..+++|++|+++ +.+++.++..+...+++|+.|++++|++++.++..++.+
T Consensus 409 ~l~~~~--~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 486 (592)
T 3ogk_B 409 RLVLLD--REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRG 486 (592)
T ss_dssp EEEECS--CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTC
T ss_pred EEeecC--CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhc
Confidence 998764 366787666667899999999999999994 468999999999989999999999999999999998899
Q ss_pred CCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCHHHHHHHHhhCCCcEEEEecCCCC------CCCCCCCCcc
Q 007912 481 CDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFEACKLLGQKMPRLNVEVIDESGP------PDSRPELPVK 554 (585)
Q Consensus 481 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~------~~~~~~~~~~ 554 (585)
|++|++|++++|.+++.++..+...+++|+.|++++|+++..+++.+++.+|.+++.++...+. .++.+..+++
T Consensus 487 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (592)
T 3ogk_B 487 CPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPA 566 (592)
T ss_dssp CTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC---------------CCC
T ss_pred CcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCccccccccccCCcCCcchh
Confidence 9999999999999999998888899999999999999999999999999999999999986522 1355667789
Q ss_pred EEEEEEeccCCCCCCCCceeecCC
Q 007912 555 KLYIYRTVTGRRIDMPGFVWNVGE 578 (585)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~ 578 (585)
+++.|++++|+|.|+|++++.+.+
T Consensus 567 ~~~~~~~~~g~~~~~p~~~~~l~~ 590 (592)
T 3ogk_B 567 HILAYYSLAGQRTDCPTTVRVLKE 590 (592)
T ss_dssp EEEEEECTTCSCSCCCTTCEECCS
T ss_pred heEeeeecCCCccCCCCCeEecCC
Confidence 999999999999999999999864
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=1.4e-30 Score=274.35 Aligned_cols=416 Identities=19% Similarity=0.188 Sum_probs=330.5
Q ss_pred HHHHHccCCCCcEEEecccc--------------cChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCC-CcEE
Q 007912 98 IRAMAGGYPWLEELKLKRMV--------------VTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKN-LKEL 162 (585)
Q Consensus 98 l~~l~~~~~~L~~L~l~~~~--------------~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~-L~~L 162 (585)
...+..++++|++|+++++. .....+..+...+++|++|+|+++ .+++..+..+...+++ |++|
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEE
Confidence 34567789999999997742 233456777778999999999998 6888888887765666 9999
Q ss_pred EcccCC-CCCcccccccccCCCCCcccEEEeccccC-cCCHHHHHHHHHhCCCCceEEeCCCCC----hHHHHHHHhhCC
Q 007912 163 DLWESD-VEDPSGNWLSKFPDTCTSLVSLNIACLGS-EVSFSALERLVVRCPNLRTLRLNRAVP----LEKLAHLLRQAP 236 (585)
Q Consensus 163 ~l~~~~-~~~~~~~~l~~~~~~~~~L~~L~l~~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~----~~~~~~~~~~~~ 236 (585)
++++|. +.+. .+..+...+++|++|+++++.. ......+..+...+++|++|+++++.. ...+...+..++
T Consensus 144 ~L~~~~~~~~~---~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~ 220 (592)
T 3ogk_B 144 KLDKCSGFTTD---GLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR 220 (592)
T ss_dssp EEESCEEEEHH---HHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCT
T ss_pred ECcCCCCcCHH---HHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCC
Confidence 999886 3322 2444455688999999998731 112233667778899999999987753 367888889999
Q ss_pred CceEEcCccccCCCCchhhhhhhhhhhcccccccccC--cccc-CcCchhhHhhcCCCCCEEEeecccCCchhHHHHHhc
Q 007912 237 QLVELGTGTYSADLRPDIFSNLAGAFSGCKELKSLSG--FWDV-VPAYLPAVYSVCSGLTTLNLSYATIQSPDLIKLVSQ 313 (585)
Q Consensus 237 ~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~--~~~~-~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~ 313 (585)
+|+.|+++++... .+...+..+++|++|.. +... ...........+++|+.|++.++ ....+..+...
T Consensus 221 ~L~~L~L~~~~~~-------~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~l~~~~~~ 291 (592)
T 3ogk_B 221 SLVSVKVGDFEIL-------ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM--GPNEMPILFPF 291 (592)
T ss_dssp TCCEEECSSCBGG-------GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC--CTTTGGGGGGG
T ss_pred CCcEEeccCccHH-------HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc--chhHHHHHHhh
Confidence 9999999875432 35666777888888852 2211 11122223345789999999874 33445556778
Q ss_pred CCCCcEEecccc-cchhHHHHHHhcCCCCceEEeccCCCCCCCCCCCcchHHHHHHHhCCCCCceehhc-----------
Q 007912 314 CPKLQCLWVLDY-IEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSLTEQGLVLVSEGCPKLESVLYF----------- 381 (585)
Q Consensus 314 ~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~~l~~~~~~L~~L~~~----------- 381 (585)
+++|++|+++++ +++..+..+...+++|++|++. ..+++.++..+...+++|++|.+.
T Consensus 292 ~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~----------~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~ 361 (592)
T 3ogk_B 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR----------NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361 (592)
T ss_dssp GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE----------GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSST
T ss_pred cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc----------CccCHHHHHHHHHhCCCCCEEEeecCccccccccc
Confidence 899999999986 6777777777899999999998 467888888888889999999655
Q ss_pred ccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecC-----CCCCH----HHHHHH
Q 007912 382 CRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLS-----GLLTD----RVFEYI 452 (585)
Q Consensus 382 ~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~-----~~~~~----~~~~~l 452 (585)
|..+++.++..+...|++|++|.+. |..++ +.++..+...+++|+.|+++ +.+++ .++..+
T Consensus 362 ~~~~~~~~~~~l~~~~~~L~~L~l~------~~~l~----~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~ 431 (592)
T 3ogk_B 362 EGLVSQRGLIALAQGCQELEYMAVY------VSDIT----NESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL 431 (592)
T ss_dssp TCCCCHHHHHHHHHHCTTCSEEEEE------ESCCC----HHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH
T ss_pred cCccCHHHHHHHHhhCccCeEEEee------cCCcc----HHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH
Confidence 8899999999999899999999995 33566 78888888889999999994 35564 578888
Q ss_pred HhhccccceeeccccC--CCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCHHHHHHHHhh
Q 007912 453 GTYAKKLEMLSVAFAG--ESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFEACKLLGQK 530 (585)
Q Consensus 453 ~~~~~~L~~L~l~~~~--i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~~ 530 (585)
...+++|+.|+++.|. +++.++..+...+++|++|++++|.+++.++..++..+++|++|++++|.+++.++..+...
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 8889999999998765 89999999988899999999999999999988889999999999999999999999999889
Q ss_pred CCCcEEEEecCCCCCC
Q 007912 531 MPRLNVEVIDESGPPD 546 (585)
Q Consensus 531 ~~~l~~~~~~~~~~~~ 546 (585)
+|.++...+..+...+
T Consensus 512 l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 512 LPSLRYLWVQGYRASM 527 (592)
T ss_dssp CSSCCEEEEESCBCCT
T ss_pred cCccCeeECcCCcCCH
Confidence 9999988888775543
No 4
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=2.3e-30 Score=272.97 Aligned_cols=412 Identities=20% Similarity=0.219 Sum_probs=329.2
Q ss_pred hHHHhhCCCceEEEecCCCCCCCCCCCcCCCCCcchhHHHHHHccCCCCcEEEeccc-ccChHHHHHHHHhCCCCcEEee
Q 007912 60 RMAIRRFPEVRSVELKGKPHFADFNLVPEGWGGYVYPWIRAMAGGYPWLEELKLKRM-VVTDESLELIAKSFKNFKVLVL 138 (585)
Q Consensus 60 ~~l~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~l~~l~~~~~~L~~L~L 138 (585)
..+..++++|++|+++++. + .+..+..+.+.+++|++|++++| .+++..+..+...+++|++|++
T Consensus 98 ~~l~~~~~~L~~L~L~~~~-~-------------~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L 163 (594)
T 2p1m_B 98 EAMSSSYTWLEEIRLKRMV-V-------------TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL 163 (594)
T ss_dssp HHHHHHCTTCCEEEEESCB-C-------------CHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHhCCCCCeEEeeCcE-E-------------cHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeC
Confidence 3567789999999999753 1 33445666667999999999998 7888888888888999999999
Q ss_pred cccCCCCH---HHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHhCCCCc
Q 007912 139 SSCEGFST---HGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLR 215 (585)
Q Consensus 139 ~~~~~~~~---~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~ 215 (585)
++|. +++ ..+..+...+++|++|+++++. .......+..+...+++|++|+++++. ....+..+...+++|+
T Consensus 164 ~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~---~~~~l~~~~~~~~~L~ 238 (594)
T 2p1m_B 164 RESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAV---PLEKLATLLQRAPQLE 238 (594)
T ss_dssp TTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTS---CHHHHHHHHHHCTTCS
T ss_pred cCCc-cCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCC---cHHHHHHHHhcCCcce
Confidence 9885 332 2344455578999999999886 222233355555568899999999873 3344778888999999
Q ss_pred eEEeCCCCC------hHHHHHHHhhCCCceEE-cCccccCCCCchhhhhhhhhhhccccccccc-CccccCcCchhhHhh
Q 007912 216 TLRLNRAVP------LEKLAHLLRQAPQLVEL-GTGTYSADLRPDIFSNLAGAFSGCKELKSLS-GFWDVVPAYLPAVYS 287 (585)
Q Consensus 216 ~L~l~~~~~------~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~-~~~~~~~~~l~~~~~ 287 (585)
.|.+..+.. +..+...+..+++|+.+ .+.... ...+......+++|++|. ....+....+..+..
T Consensus 239 ~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-------~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~ 311 (594)
T 2p1m_B 239 ELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-------PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLC 311 (594)
T ss_dssp EEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-------GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHT
T ss_pred EcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-------hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHh
Confidence 999876642 34566677889999998 333221 124555566788999886 233355555666677
Q ss_pred cCCCCCEEEeecccCCchhHHHHHhcCCCCcEEeccc----------ccchhHHHHHHhcCCCCceEEeccCCCCCCCCC
Q 007912 288 VCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLD----------YIEDSGLEALAATCKDLRELRVFPSEPFGDEPN 357 (585)
Q Consensus 288 ~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~----------~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 357 (585)
.+++|++|++++| +.+.++..+...+++|+.|++.+ .+++.++..+...+++|+.|.+. |
T Consensus 312 ~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~---------~ 381 (594)
T 2p1m_B 312 QCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF---------C 381 (594)
T ss_dssp TCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE---------E
T ss_pred cCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh---------c
Confidence 8999999999998 77788888888899999999932 37788888888889999999765 6
Q ss_pred CCcchHHHHHHHhCCCCCceeh-h-----cccCCc----HHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHH
Q 007912 358 VSLTEQGLVLVSEGCPKLESVL-Y-----FCRRMS----NDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGA 427 (585)
Q Consensus 358 ~~l~~~~l~~l~~~~~~L~~L~-~-----~~~~~~----~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~ 427 (585)
+.+++.++..+...+++|+.|. . .|..++ +.++..+...|++|+.|++++ .++ +.++..
T Consensus 382 ~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-------~l~----~~~~~~ 450 (594)
T 2p1m_B 382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-------LLT----DKVFEY 450 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-------SCC----HHHHHH
T ss_pred CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-------ccc----HHHHHH
Confidence 7899999988888899999995 4 468888 788888888999999999954 455 788888
Q ss_pred HhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhc
Q 007912 428 IVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKL 506 (585)
Q Consensus 428 ~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l 506 (585)
+...+++|+.|++++ .+++.++..+...+++|+.|+|++|.+++.++..++..+++|++|++++|++++.++..+...+
T Consensus 451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l 530 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKM 530 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHC
T ss_pred HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhC
Confidence 888899999999988 7899999999888999999999999999999998878899999999999999999988888899
Q ss_pred ccCCEEEeeccc
Q 007912 507 ETMRSLWMSSCS 518 (585)
Q Consensus 507 ~~L~~L~l~~~~ 518 (585)
|+|+...+..+.
T Consensus 531 p~l~i~~~~~~~ 542 (594)
T 2p1m_B 531 PKLNVEVIDERG 542 (594)
T ss_dssp TTEEEEEECSSS
T ss_pred CCCEEEEecCCC
Confidence 999887776654
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.7e-28 Score=248.79 Aligned_cols=409 Identities=17% Similarity=0.175 Sum_probs=300.4
Q ss_pred CCceEEEecCCCCCCCCCCCcCCCCCcchhHHHHHHccCCCCcEEEecccccChHHHHHH---HHhCCCCcEEeecccCC
Q 007912 67 PEVRSVELKGKPHFADFNLVPEGWGGYVYPWIRAMAGGYPWLEELKLKRMVVTDESLELI---AKSFKNFKVLVLSSCEG 143 (585)
Q Consensus 67 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l---~~~~~~L~~L~L~~~~~ 143 (585)
+++++|+++++. + ....+..++..+++|++|++++|.+++.....+ ...+++|++|+++++ .
T Consensus 3 ~~l~~L~Ls~~~-l-------------~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~ 67 (461)
T 1z7x_W 3 LDIQSLDIQCEE-L-------------SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-E 67 (461)
T ss_dssp EEEEEEEEESCC-C-------------CHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-C
T ss_pred ccceehhhhhcc-c-------------CchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-c
Confidence 357788887543 1 223355566778999999999999887754443 345689999999886 5
Q ss_pred CCHHHHHHHHhcCC----CCcEEEcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHh----CCCCc
Q 007912 144 FSTHGLAAIAADCK----NLKELDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVR----CPNLR 215 (585)
Q Consensus 144 ~~~~~l~~l~~~~~----~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~----~~~L~ 215 (585)
+++.++..+...++ +|++|++++|.+.+.+...+......+++|++|+++++ .+++.+...+... .++|+
T Consensus 68 l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n--~i~~~~~~~l~~~l~~~~~~L~ 145 (461)
T 1z7x_W 68 LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN--LLGDAGLQLLCEGLLDPQCRLE 145 (461)
T ss_dssp CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS--BCHHHHHHHHHHHHTSTTCCCC
T ss_pred CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC--cCchHHHHHHHHHHhcCCCcce
Confidence 77777777777776 79999999998887665556666667889999999988 5776666655543 45799
Q ss_pred eEEeCCCCCh----HHHHHHHhhCCCceEEcCccccCCCCchhhhhhhhhhhcccccccccCccccCcCchh-hHhhcCC
Q 007912 216 TLRLNRAVPL----EKLAHLLRQAPQLVELGTGTYSADLRPDIFSNLAGAFSGCKELKSLSGFWDVVPAYLP-AVYSVCS 290 (585)
Q Consensus 216 ~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~-~~~~~~~ 290 (585)
+|++++|.-. ..+...+..+++|++|++++..... .....+. .+....+
T Consensus 146 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~--------------------------~~~~~l~~~l~~~~~ 199 (461)
T 1z7x_W 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE--------------------------AGVRVLCQGLKDSPC 199 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH--------------------------HHHHHHHHHHHHSCC
T ss_pred EEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch--------------------------HHHHHHHHHHhcCCC
Confidence 9999888522 2456667778888888886543211 0000011 1112356
Q ss_pred CCCEEEeecccCCchh---HHHHHhcCCCCcEEecccc-cchhHHHHHHh----cCCCCceEEeccCCCCCCCCCCCcch
Q 007912 291 GLTTLNLSYATIQSPD---LIKLVSQCPKLQCLWVLDY-IEDSGLEALAA----TCKDLRELRVFPSEPFGDEPNVSLTE 362 (585)
Q Consensus 291 ~L~~L~L~~~~~~~~~---l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~~~~l~~ 362 (585)
+|++|++++|.+++.+ +...+..+++|+.|+++++ +++.++..+.. .+++|++|++++ +.+++
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~---------n~l~~ 270 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE---------CGITA 270 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT---------SCCCH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC---------CCCCH
Confidence 9999999999877655 4455667899999999986 66666655543 578999999983 37777
Q ss_pred HHHHHH---HhCCCCCceehhcccCCcHHHHHHHHhhC----CCCceeeeeecCCCCCCCCCCCcchh---hHHHHhhhC
Q 007912 363 QGLVLV---SEGCPKLESVLYFCRRMSNDALVTIAKNR----PSMIRFRLCIIDPQTPDYLTLEPLDV---GFGAIVQHC 432 (585)
Q Consensus 363 ~~l~~l---~~~~~~L~~L~~~~~~~~~~~~~~l~~~~----~~L~~L~L~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 432 (585)
.+...+ ...+++|++|++..+.+++.+...+...+ ++|++|+++++. ++ +. .+...+..+
T Consensus 271 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~------l~----~~~~~~l~~~l~~~ 340 (461)
T 1z7x_W 271 KGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS------FT----AACCSHFSSVLAQN 340 (461)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC------CB----GGGHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC------Cc----hHHHHHHHHHHhhC
Confidence 764443 33589999998777889888877776543 699999998653 33 33 355567788
Q ss_pred CCCcEEecCC-CCCHHHHHHHHhh----ccccceeeccccCCCHHHHHHHH---hcCCCCCeEEeeCCCCChHHHHHHHH
Q 007912 433 KDLRRLSLSG-LLTDRVFEYIGTY----AKKLEMLSVAFAGESDLGLHHVL---SGCDSLRKLEIMDCPFGDKALLANAA 504 (585)
Q Consensus 433 ~~L~~L~l~~-~~~~~~~~~l~~~----~~~L~~L~l~~~~i~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~~~ 504 (585)
++|++|++++ .+++.+...+... .++|+.|++++|.+++.++..+. ..+++|++|++++|++++.++..+..
T Consensus 341 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~ 420 (461)
T 1z7x_W 341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 420 (461)
T ss_dssp SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHH
T ss_pred CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHH
Confidence 9999999988 7888888877654 56899999999999997766543 45899999999999999999887776
Q ss_pred hcc----cCCEEEeecccCC---HHHHHHHHhhCCCcEEE
Q 007912 505 KLE----TMRSLWMSSCSVS---FEACKLLGQKMPRLNVE 537 (585)
Q Consensus 505 ~l~----~L~~L~l~~~~i~---~~~~~~l~~~~~~l~~~ 537 (585)
.++ +|+.|.+.++.++ .+.++.+.+..|++++.
T Consensus 421 ~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 421 SVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp HHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred HhccCCcchhheeecccccCHHHHHHHHHHhccCCCcEee
Confidence 665 5999999888764 45677778889998764
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=3.1e-27 Score=240.94 Aligned_cols=380 Identities=16% Similarity=0.183 Sum_probs=279.5
Q ss_pred CCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHH---HHHHHhcCCCCcEEEcccCCCCCccccccccc-C
Q 007912 106 PWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHG---LAAIAADCKNLKELDLWESDVEDPSGNWLSKF-P 181 (585)
Q Consensus 106 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~---l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~ 181 (585)
++|++|+++++.+++..+..+...+++|++|++++| .++..+ +......+++|++|++++|.+.+.....+... .
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 578999999999999888887778899999999998 477664 44455678999999999998877655444432 2
Q ss_pred CCCCcccEEEeccccCcCCHH---HHHHHHHhCCCCceEEeCCCCChHH-HHHHHh----hCCCceEEcCccccCCCCch
Q 007912 182 DTCTSLVSLNIACLGSEVSFS---ALERLVVRCPNLRTLRLNRAVPLEK-LAHLLR----QAPQLVELGTGTYSADLRPD 253 (585)
Q Consensus 182 ~~~~~L~~L~l~~~~~~~~~~---~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~----~~~~L~~L~l~~~~~~~~~~ 253 (585)
...++|++|+++++ .+++. .+......+++|++|+++++.-... ...+.. ..++|++|+++++....
T Consensus 82 ~~~~~L~~L~L~~n--~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~--- 156 (461)
T 1z7x_W 82 TPSCKIQKLSLQNC--CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA--- 156 (461)
T ss_dssp STTCCCCEEECTTS--CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG---
T ss_pred hCCCceeEEEccCC--CCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH---
Confidence 22237999999988 56653 4455567789999999998873322 222222 24578888886553221
Q ss_pred hhhhhhhhhhcccccccccCccccCcCchhhHhhcCCCCCEEEeecccCCchhHHHHHh----cCCCCcEEecccc-cch
Q 007912 254 IFSNLAGAFSGCKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYATIQSPDLIKLVS----QCPKLQCLWVLDY-IED 328 (585)
Q Consensus 254 ~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~----~~~~L~~L~l~~~-~~~ 328 (585)
.....+......+++|++|++++|.+.+.+...+.. ..++|+.|+++++ +++
T Consensus 157 -----------------------~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 157 -----------------------ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp -----------------------GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred -----------------------HHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 111123334446899999999999987777666554 3569999999986 665
Q ss_pred hHHH---HHHhcCCCCceEEeccCCCCCCCCCCCcchHHHHHHHh----CCCCCceehhcccCCcHHHHHHHH---hhCC
Q 007912 329 SGLE---ALAATCKDLRELRVFPSEPFGDEPNVSLTEQGLVLVSE----GCPKLESVLYFCRRMSNDALVTIA---KNRP 398 (585)
Q Consensus 329 ~~~~---~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~~l~~----~~~~L~~L~~~~~~~~~~~~~~l~---~~~~ 398 (585)
.+.. .....+++|++|++++ +.+++.++..+.. .+++|++|.+..+.+++.+...+. ..++
T Consensus 214 ~~~~~l~~~l~~~~~L~~L~Ls~---------n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 284 (461)
T 1z7x_W 214 DNCRDLCGIVASKASLRELALGS---------NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284 (461)
T ss_dssp THHHHHHHHHHHCTTCCEEECCS---------SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCccEEeccC---------CcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC
Confidence 5433 3334789999999983 4788877766543 478999998777799988755444 3589
Q ss_pred CCceeeeeecCCCCCCCCCCCcchhhHHHHhhh----CCCCcEEecCC-CCCHHHHHHHH---hhccccceeeccccCCC
Q 007912 399 SMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQH----CKDLRRLSLSG-LLTDRVFEYIG---TYAKKLEMLSVAFAGES 470 (585)
Q Consensus 399 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~L~~L~l~~-~~~~~~~~~l~---~~~~~L~~L~l~~~~i~ 470 (585)
+|++|+++++. ++ +.+...+... .++|++|++++ .+++.+...+. ..+++|+.|++++|.++
T Consensus 285 ~L~~L~Ls~n~------i~----~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 285 SLKELSLAGNE------LG----DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp TCCEEECTTCC------CH----HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred CcceEECCCCC------Cc----hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 99999998642 33 4554444433 36999999988 67776554443 45789999999999999
Q ss_pred HHHHHHHHhc----CCCCCeEEeeCCCCChHHHHH---HHHhcccCCEEEeecccCCHHHHHHHHhhCCC
Q 007912 471 DLGLHHVLSG----CDSLRKLEIMDCPFGDKALLA---NAAKLETMRSLWMSSCSVSFEACKLLGQKMPR 533 (585)
Q Consensus 471 ~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~i~~~~~~~l~~~~~~ 533 (585)
+.++..+... +++|++|++++|.+++.++.. .+..+++|++|++++|+++..++..+.+.+|.
T Consensus 355 ~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~ 424 (461)
T 1z7x_W 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 424 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTS
T ss_pred cccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhcc
Confidence 9988877553 679999999999999876444 44668999999999999999999999876654
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.93 E-value=5.3e-25 Score=214.34 Aligned_cols=169 Identities=21% Similarity=0.225 Sum_probs=91.3
Q ss_pred CCCCCCCCHHHHHHHHhccCChHHHHHHHHHhHHHHHhhc--cccceeEecCcccCChhHHHhhC--CCceEEEecCCCC
Q 007912 4 KMSYSSLPEDVLEHVFSFVQSDKDRNVISLVCKSWYEIER--WCRRRIFVGNCYAVSPRMAIRRF--PEVRSVELKGKPH 79 (585)
Q Consensus 4 ~~~i~~LP~ell~~If~~L~~~~~~~~~~~Vcr~W~~~~~--~~~~~l~~~~~~~~~~~~l~~~~--~~l~~L~l~~~~~ 79 (585)
...+++||+|++.+||+||+ .+|+.++++|||+|++++. ..++.+.+...... ...+.++ ++++.+++.+..-
T Consensus 6 ~~~~~~LP~eil~~If~~L~-~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l 82 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFM 82 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSC-HHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEE
T ss_pred cCChhhCCHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhcCchhheeeccccccCC--HHHHHhhhhccceEEEcCCccc
Confidence 45689999999999999999 7899999999999999972 22333333322111 2223333 4455555543210
Q ss_pred CCCCCCCcCCCCCcchhHHHHHHccCCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCC
Q 007912 80 FADFNLVPEGWGGYVYPWIRAMAGGYPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNL 159 (585)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L 159 (585)
. .. .+ . ...+++|++|+++++.+++..+......+++|++|++++| .+++.....+. .++
T Consensus 83 ~-~~--~~----~---------~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~-~~~-- 142 (336)
T 2ast_B 83 D-QP--LA----E---------HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLA-KNS-- 142 (336)
T ss_dssp C-SC--CC----S---------CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHT-TCT--
T ss_pred c-cc--ch----h---------hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHh-cCC--
Confidence 0 00 00 0 0123455555555555444444444444455555555544 23333333332 344
Q ss_pred cEEEcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCC
Q 007912 160 KELDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRA 222 (585)
Q Consensus 160 ~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 222 (585)
+|++|+++++. .+++..+..+...+++|++|++++|
T Consensus 143 --------------------------~L~~L~L~~~~-~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 143 --------------------------NLVRLNLSGCS-GFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp --------------------------TCSEEECTTCB-SCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred --------------------------CCCEEECCCCC-CCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 44444444442 3455555555666777777777666
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=2e-24 Score=228.00 Aligned_cols=86 Identities=15% Similarity=0.019 Sum_probs=42.4
Q ss_pred ccCCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCC
Q 007912 103 GGYPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPD 182 (585)
Q Consensus 103 ~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 182 (585)
..+++|++|+++++.+.......+ ..+++|++|+++++. ++...... +..+++|++|++++|.+.......+ ..
T Consensus 78 ~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~-i~~l~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~---~~ 151 (606)
T 3t6q_A 78 QSQHRLDTLVLTANPLIFMAETAL-SGPKALKHLFFIQTG-ISSIDFIP-LHNQKTLESLYLGSNHISSIKLPKG---FP 151 (606)
T ss_dssp TTCTTCCEEECTTCCCSEECTTTT-SSCTTCCEEECTTSC-CSCGGGSC-CTTCTTCCEEECCSSCCCCCCCCTT---CC
T ss_pred cCccccCeeeCCCCcccccChhhh-cccccccEeeccccC-cccCCcch-hccCCcccEEECCCCcccccCcccc---cC
Confidence 345666666666665443211112 244666666666552 22211111 2356666777776666554321111 11
Q ss_pred CCCcccEEEeccc
Q 007912 183 TCTSLVSLNIACL 195 (585)
Q Consensus 183 ~~~~L~~L~l~~~ 195 (585)
+++|++|+++++
T Consensus 152 -l~~L~~L~L~~n 163 (606)
T 3t6q_A 152 -TEKLKVLDFQNN 163 (606)
T ss_dssp -CTTCCEEECCSS
T ss_pred -CcccCEEEcccC
Confidence 456777776655
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=1.6e-24 Score=233.82 Aligned_cols=404 Identities=16% Similarity=0.144 Sum_probs=184.1
Q ss_pred ccCCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHH--HHHhcCCCCcEEEcccCCCCCccccccccc
Q 007912 103 GGYPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLA--AIAADCKNLKELDLWESDVEDPSGNWLSKF 180 (585)
Q Consensus 103 ~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~--~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 180 (585)
..+++|++|++++|.+.......+...+++|++|+++++. ++..... .....+++|++|++++|.+..... .
T Consensus 123 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~--- 196 (768)
T 3rgz_A 123 GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGNKISGDVD--V--- 196 (768)
T ss_dssp GGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC-CEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--C---
T ss_pred hCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc-cCCcCChhhhhhccCCCCCEEECCCCcccccCC--c---
Confidence 4567777777777654322111111245677777777653 2221111 123467778888887776543221 1
Q ss_pred CCCCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHHHHHhhCCCceEEcCccccCCCCchhh--h--
Q 007912 181 PDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVELGTGTYSADLRPDIF--S-- 256 (585)
Q Consensus 181 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~-- 256 (585)
..+++|++|+++++. +... +.. ...+++|++|+++++.-...++..+..+++|+.|+++++......... .
T Consensus 197 -~~l~~L~~L~Ls~n~--l~~~-~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L 271 (768)
T 3rgz_A 197 -SRCVNLEFLDVSSNN--FSTG-IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSL 271 (768)
T ss_dssp -TTCTTCCEEECCSSC--CCSC-CCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTC
T ss_pred -ccCCcCCEEECcCCc--CCCC-Ccc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCC
Confidence 346688888887663 2211 111 345778888888877644456666777888888887665432100000 0
Q ss_pred ------------hhhhh-hhcccccccccCccccCcCchhhHhhcCCCCCEEEeecccCCchhHHHHHhcCCCCcEEecc
Q 007912 257 ------------NLAGA-FSGCKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVL 323 (585)
Q Consensus 257 ------------~l~~~-~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~ 323 (585)
.+... ...|++|++|.-..+.-...++.....+++|+.|++++|.+........+..+++|+.|+++
T Consensus 272 ~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls 351 (768)
T 3rgz_A 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351 (768)
T ss_dssp CEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred CEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence 00000 11123333332111100111122223345555555555543222112223345555555555
Q ss_pred cc-cchhHHHHHHhcCCCCceEEeccCCCCCCCCCCCcchHHHHHHH-hCCCCCceehhcccCCcHHHHHHHHhhCCCCc
Q 007912 324 DY-IEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSLTEQGLVLVS-EGCPKLESVLYFCRRMSNDALVTIAKNRPSMI 401 (585)
Q Consensus 324 ~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~~l~-~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~ 401 (585)
++ +.......+....++|+.|+++.+ .++......+. ..+++|+.|.+..+.++... ......+++|+
T Consensus 352 ~n~l~~~~p~~l~~l~~~L~~L~Ls~N---------~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-p~~l~~l~~L~ 421 (768)
T 3rgz_A 352 FNEFSGELPESLTNLSASLLTLDLSSN---------NFSGPILPNLCQNPKNTLQELYLQNNGFTGKI-PPTLSNCSELV 421 (768)
T ss_dssp SSEEEECCCTTHHHHTTTCSEEECCSS---------EEEEECCTTTTCSTTCCCCEEECCSSEEEEEC-CGGGGGCTTCC
T ss_pred CCccCccccHHHHhhhcCCcEEEccCC---------CcCCCcChhhhhcccCCccEEECCCCcccccc-CHHHhcCCCCC
Confidence 43 111111111111124555554421 11110000000 01345555543333332111 11122456666
Q ss_pred eeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhc
Q 007912 402 RFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSG 480 (585)
Q Consensus 402 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~ 480 (585)
.|+++++.... .+...+..+++|+.|++++ .++...... ...+++|+.|++++|.++......+ ..
T Consensus 422 ~L~Ls~N~l~~-----------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l-~~ 488 (768)
T 3rgz_A 422 SLHLSFNYLSG-----------TIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDLTGEIPSGL-SN 488 (768)
T ss_dssp EEECCSSEEES-----------CCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGG-GG
T ss_pred EEECcCCcccC-----------cccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCceEEEecCCcccCcCCHHH-hc
Confidence 66665542200 0111244566677777665 222211111 1235567777777776654333333 55
Q ss_pred CCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCHHHHHHHHhhCCCcEEEEecCC
Q 007912 481 CDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFEACKLLGQKMPRLNVEVIDES 542 (585)
Q Consensus 481 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~~~~~l~~~~~~~~ 542 (585)
+++|++|++++|.+++... ..+..+++|++|++++|+++......+ ..++.++...+..+
T Consensus 489 l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGEIP-KWIGRLENLAILKLSNNSFSGNIPAEL-GDCRSLIWLDLNTN 548 (768)
T ss_dssp CTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCEEECCGGG-GGCTTCCEEECCSS
T ss_pred CCCCCEEEccCCccCCcCC-hHHhcCCCCCEEECCCCcccCcCCHHH-cCCCCCCEEECCCC
Confidence 6777777777776553211 133456677777777776543222222 24556555555443
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=2.7e-24 Score=226.98 Aligned_cols=155 Identities=15% Similarity=0.044 Sum_probs=102.0
Q ss_pred CceEEEecCCCCCCCCCCCcCCCCCcchhHHHHHHccCCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHH
Q 007912 68 EVRSVELKGKPHFADFNLVPEGWGGYVYPWIRAMAGGYPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTH 147 (585)
Q Consensus 68 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~ 147 (585)
.++.|+++++.- ... .+ ..+..+++|++|+++++.+.......+ ..+++|++|+++++. ++..
T Consensus 34 ~l~~L~Ls~n~i-~~~--~~------------~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~ 96 (606)
T 3t6q_A 34 STECLEFSFNVL-PTI--QN------------TTFSRLINLTFLDLTRCQIYWIHEDTF-QSQHRLDTLVLTANP-LIFM 96 (606)
T ss_dssp TCCEEECTTCCC-SEE--CT------------TTSTTCTTCSEEECTTCCCCEECTTTT-TTCTTCCEEECTTCC-CSEE
T ss_pred cCcEEEccCCcc-CcC--Ch------------hHhccCccceEEECCCCccceeChhhc-cCccccCeeeCCCCc-cccc
Confidence 589999987542 111 11 123567999999999997765322223 367899999999873 3221
Q ss_pred HHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHH
Q 007912 148 GLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEK 227 (585)
Q Consensus 148 ~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~ 227 (585)
. ...+..+++|++|++++|.+.......+ ..+++|++|+++++. +......... .+++|++|+++++.-...
T Consensus 97 ~-~~~~~~l~~L~~L~L~~n~i~~l~~~~~----~~l~~L~~L~L~~n~--l~~~~~~~~~-~l~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 97 A-ETALSGPKALKHLFFIQTGISSIDFIPL----HNQKTLESLYLGSNH--ISSIKLPKGF-PTEKLKVLDFQNNAIHYL 168 (606)
T ss_dssp C-TTTTSSCTTCCEEECTTSCCSCGGGSCC----TTCTTCCEEECCSSC--CCCCCCCTTC-CCTTCCEEECCSSCCCEE
T ss_pred C-hhhhcccccccEeeccccCcccCCcchh----ccCCcccEEECCCCc--ccccCccccc-CCcccCEEEcccCccccc
Confidence 1 1223478999999999998876543433 346799999999873 3321111222 278999999998864333
Q ss_pred HHHHHhhCCCce--EEcCcccc
Q 007912 228 LAHLLRQAPQLV--ELGTGTYS 247 (585)
Q Consensus 228 ~~~~~~~~~~L~--~L~l~~~~ 247 (585)
.+..+..+++|+ .+++++..
T Consensus 169 ~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 169 SKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp CHHHHHTTTTCCSEEEECTTCC
T ss_pred ChhhhhhhcccceeEEecCCCc
Confidence 456677888888 67776544
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.84 E-value=1.4e-24 Score=234.29 Aligned_cols=408 Identities=17% Similarity=0.123 Sum_probs=204.3
Q ss_pred ccCCCCcEEEecccccChHHHH--HHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCccccccccc
Q 007912 103 GGYPWLEELKLKRMVVTDESLE--LIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKF 180 (585)
Q Consensus 103 ~~~~~L~~L~l~~~~~~~~~l~--~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 180 (585)
..+++|++|+++++.+...... .+ ..+++|++|+++++. +.......+...+++|++|++++|.+.......+ ..
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~~~~~l-~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~ 173 (768)
T 3rgz_A 97 KCSASLTSLDLSRNSLSGPVTTLTSL-GSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW-VL 173 (768)
T ss_dssp CCCTTCCEEECCSSEEEEEGGGGGGG-GGCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSSCCEEETHHHH-HH
T ss_pred ccCCCCCEEECCCCcCCCcCCChHHH-hCCCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCCccCCcCChhh-hh
Confidence 4567888888888876532211 23 357888888888763 1111111112367888888888887664432221 11
Q ss_pred CCCCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHHHHHhhCCCceEEcCccccCCCCchhhhhhhh
Q 007912 181 PDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVELGTGTYSADLRPDIFSNLAG 260 (585)
Q Consensus 181 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 260 (585)
...+++|++|+++++. +..... ...+++|++|+++++.-...++. +..+++|++|+++++.... .+..
T Consensus 174 ~~~l~~L~~L~Ls~n~--l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~------~~~~ 241 (768)
T 3rgz_A 174 SDGCGELKHLAISGNK--ISGDVD---VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG------DFSR 241 (768)
T ss_dssp TTCCTTCCEEECCSSE--EESCCB---CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCS------CHHH
T ss_pred hccCCCCCEEECCCCc--ccccCC---cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCC------cccH
Confidence 3356788888888663 211100 14678899999888763333333 6778889999887765542 3445
Q ss_pred hhhcccccccccCccccCcCchhhHhhcCCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc-cchhHHHHHHhcCC
Q 007912 261 AFSGCKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY-IEDSGLEALAATCK 339 (585)
Q Consensus 261 ~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~ 339 (585)
.+..+++|++|.-..+.-...++.. .+++|++|++++|.+.......+...+++|+.|+++++ +... .......++
T Consensus 242 ~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~-~p~~~~~l~ 318 (768)
T 3rgz_A 242 AISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA-VPPFFGSCS 318 (768)
T ss_dssp HTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC-CCGGGGGCT
T ss_pred HHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc-cchHHhcCC
Confidence 5667777877742111111111111 45677777777665432222222233466777777664 2211 111112566
Q ss_pred CCceEEeccCCCCCCCCCCCcc-hHHHHHHHhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCC--CCCC
Q 007912 340 DLRELRVFPSEPFGDEPNVSLT-EQGLVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQT--PDYL 416 (585)
Q Consensus 340 ~L~~L~l~~~~~~~~~~~~~l~-~~~l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~--~~~~ 416 (585)
+|++|+++. +.++ ..... ....+++|++|.+..+.++......+....++|+.|+++++...+ ...+
T Consensus 319 ~L~~L~L~~---------n~l~~~ip~~-~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~ 388 (768)
T 3rgz_A 319 LLESLALSS---------NNFSGELPMD-TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388 (768)
T ss_dssp TCCEEECCS---------SEEEEECCHH-HHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT
T ss_pred CccEEECCC---------CcccCcCCHH-HHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhh
Confidence 677777662 1222 11111 122366666665443333211111111111255555554432100 0000
Q ss_pred C--------CCc-----chhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCC
Q 007912 417 T--------LEP-----LDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCD 482 (585)
Q Consensus 417 ~--------~~~-----~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~ 482 (585)
. ... ....+...+..+++|+.|++++ .+++..... ...+++|+.|++++|.++......+ ..++
T Consensus 389 ~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~ 466 (768)
T 3rgz_A 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQEL-MYVK 466 (768)
T ss_dssp TCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCCSCCCGGG-GGCT
T ss_pred hhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH-HhcCCCCCEEECCCCcccCcCCHHH-cCCC
Confidence 0 000 0001112245566666666665 222111111 1234567777777666554333332 4566
Q ss_pred CCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCHHHHHHHHhhCCCcEEEEecCC
Q 007912 483 SLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFEACKLLGQKMPRLNVEVIDES 542 (585)
Q Consensus 483 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~~~~~l~~~~~~~~ 542 (585)
+|++|++++|.++... ...+..+++|+.|++++|+++......+ ..++.++...+..+
T Consensus 467 ~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N 524 (768)
T 3rgz_A 467 TLETLILDFNDLTGEI-PSGLSNCTNLNWISLSNNRLTGEIPKWI-GRLENLAILKLSNN 524 (768)
T ss_dssp TCCEEECCSSCCCSCC-CGGGGGCTTCCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSS
T ss_pred CceEEEecCCcccCcC-CHHHhcCCCCCEEEccCCccCCcCChHH-hcCCCCCEEECCCC
Confidence 6777777777555321 1134566677777777776653322223 24666666666555
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.83 E-value=4.8e-20 Score=180.07 Aligned_cols=105 Identities=14% Similarity=0.143 Sum_probs=72.2
Q ss_pred hCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHH
Q 007912 396 NRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGL 474 (585)
Q Consensus 396 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 474 (585)
.+++|+.|+++++.... + ..+..+++|+.|++++ .+++. . ....+++|+.|++++|.+++...
T Consensus 241 ~l~~L~~L~l~~n~l~~---~----------~~~~~l~~L~~L~l~~n~l~~~--~-~~~~l~~L~~L~L~~n~l~~~~~ 304 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISD---I----------NAVKDLTKLKMLNVGSNQISDI--S-VLNNLSQLNSLFLNNNQLGNEDM 304 (347)
T ss_dssp TCTTCCEEECCSSCCCC---C----------GGGTTCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCGGGH
T ss_pred cCCCCCEEECCCCccCC---C----------hhHhcCCCcCEEEccCCccCCC--h-hhcCCCCCCEEECcCCcCCCcCh
Confidence 46777777776543211 1 1145677888888877 44432 1 23456789999999998888777
Q ss_pred HHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCC
Q 007912 475 HHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVS 520 (585)
Q Consensus 475 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 520 (585)
..+ ..+++|++|++++|++++... ...+++|+.|++++|.++
T Consensus 305 ~~l-~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 305 EVI-GGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHH-HTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC---
T ss_pred hHh-hccccCCEEEccCCccccccC---hhhhhccceeehhhhccc
Confidence 766 678899999999998776542 667889999999998875
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=9.8e-23 Score=215.01 Aligned_cols=227 Identities=14% Similarity=0.096 Sum_probs=117.9
Q ss_pred cCCCCCEEEeeccc-CCchhHHHHHhcCCCCcEEecccc-cchhH-HHHHHhcCCCCceEEeccCCCCCCCCCCCcchHH
Q 007912 288 VCSGLTTLNLSYAT-IQSPDLIKLVSQCPKLQCLWVLDY-IEDSG-LEALAATCKDLRELRVFPSEPFGDEPNVSLTEQG 364 (585)
Q Consensus 288 ~~~~L~~L~L~~~~-~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~-~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 364 (585)
.+++|+.|++++|. .... -...+++|+.|+++++ +.... .......+++|++|+++.+ .++...
T Consensus 326 ~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n---------~l~~~~ 392 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISF----KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN---------GAIIMS 392 (606)
T ss_dssp CCSSCCEEEEESCSSCEEC----CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC---------SEEEEC
T ss_pred CCCccceeeccCCcCccch----hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC---------ccccch
Confidence 34555555555553 2111 1224566666666654 22110 0112235677777777632 122111
Q ss_pred HHHHHhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-C
Q 007912 365 LVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-L 443 (585)
Q Consensus 365 l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~ 443 (585)
.....+++|+.|.+..+.++..........+++|+.|+++++... ......+..+++|++|++++ .
T Consensus 393 --~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 393 --ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK-----------IDFDGIFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp --CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCE-----------ECCTTTTTTCTTCCEEECTTCE
T ss_pred --hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCC-----------ccchhhhcCCCCCCEEECCCCc
Confidence 112235667776544444332211112234677777777654321 01111245677788888876 3
Q ss_pred CCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCHHH
Q 007912 444 LTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFEA 523 (585)
Q Consensus 444 ~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~ 523 (585)
+++..+......+++|+.|++++|.+++.....+ .++++|++|++++|++++... ..+..+++|+.|++++|+++...
T Consensus 460 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~p 537 (606)
T 3vq2_A 460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF-DTLHRLQLLNMSHNNLLFLDS-SHYNQLYSLSTLDCSFNRIETSK 537 (606)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCSCEEG-GGTTTCTTCCEEECTTSCCCCEE
T ss_pred CCCcchHHhhccCCCCCEEECCCCcCCccChhhh-cccccCCEEECCCCcCCCcCH-HHccCCCcCCEEECCCCcCcccC
Confidence 3332122222346778888888887766544443 567888888888887665321 23456778888888888765321
Q ss_pred HHHHHhhCC-CcEEEEecCCCC
Q 007912 524 CKLLGQKMP-RLNVEVIDESGP 544 (585)
Q Consensus 524 ~~~l~~~~~-~l~~~~~~~~~~ 544 (585)
.. + ..+| .++...+.+++.
T Consensus 538 ~~-~-~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 538 GI-L-QHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp SC-G-GGSCTTCCEEECCSCCC
T ss_pred Hh-H-hhhcccCcEEEccCCCc
Confidence 11 2 3455 466666666544
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=1.2e-21 Score=204.24 Aligned_cols=415 Identities=13% Similarity=0.027 Sum_probs=218.4
Q ss_pred CCCceEEEecCCCCCCCCCCCcCCCCCcchhHHHHHHccCCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCC
Q 007912 66 FPEVRSVELKGKPHFADFNLVPEGWGGYVYPWIRAMAGGYPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFS 145 (585)
Q Consensus 66 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 145 (585)
+++++.|+++++. +... .+. .+..+++|++|+++++.++......+. .+++|++|+++++. ++
T Consensus 25 ~~~L~~L~Ls~n~-l~~~--~~~------------~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~-l~ 87 (549)
T 2z81_A 25 TAAMKSLDLSFNK-ITYI--GHG------------DLRACANLQVLILKSSRINTIEGDAFY-SLGSLEHLDLSDNH-LS 87 (549)
T ss_dssp CTTCCEEECCSSC-CCEE--CSS------------TTSSCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSC-CC
T ss_pred CCCccEEECcCCc-cCcc--Chh------------hhhcCCcccEEECCCCCcCccChhhcc-ccccCCEEECCCCc-cC
Confidence 4789999999764 2211 111 235689999999999977653322333 57899999999873 33
Q ss_pred HHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCCh
Q 007912 146 THGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPL 225 (585)
Q Consensus 146 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 225 (585)
.... ..+..+++|++|++++|.+..... ......+++|++|+++++. .+... .......+++|++|+++++.-.
T Consensus 88 ~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~~l~~L~~L~L~~n~-~~~~~-~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 88 SLSS-SWFGPLSSLKYLNLMGNPYQTLGV---TSLFPNLTNLQTLRIGNVE-TFSEI-RRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp SCCH-HHHTTCTTCCEEECTTCCCSSSCS---SCSCTTCTTCCEEEEEESS-SCCEE-CTTTTTTCCEEEEEEEEETTCC
T ss_pred ccCH-HHhccCCCCcEEECCCCcccccch---hhhhhccCCccEEECCCCc-ccccc-CHhhhhcccccCeeeccCCccc
Confidence 3222 223589999999999998765321 1233457799999999763 12111 0112355799999999887643
Q ss_pred HHHHHHHhhCCCceEEcCccccCCCCchhhhhhhhhhhcccccccccC-ccccCcCc--hhhHhhcCCCCCEEEeecccC
Q 007912 226 EKLAHLLRQAPQLVELGTGTYSADLRPDIFSNLAGAFSGCKELKSLSG-FWDVVPAY--LPAVYSVCSGLTTLNLSYATI 302 (585)
Q Consensus 226 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~-~~~~~~~~--l~~~~~~~~~L~~L~L~~~~~ 302 (585)
...+..+..+++|++|+++.......+ ...+..+++|+.|.- ........ ...+...+++|+.|+++++.+
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 235 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAFLL------EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTTHH------HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEE
T ss_pred ccChhhhhccccCceEecccCcccccc------hhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccccc
Confidence 334555677889999988765543211 122345677877741 11111100 001112355666666666654
Q ss_pred CchhHHHHH---hcCCCCcEEecc--------------------------------------------------------
Q 007912 303 QSPDLIKLV---SQCPKLQCLWVL-------------------------------------------------------- 323 (585)
Q Consensus 303 ~~~~l~~l~---~~~~~L~~L~l~-------------------------------------------------------- 323 (585)
.+..+..+. ..+++|+.+.+.
T Consensus 236 ~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L 315 (549)
T 2z81_A 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315 (549)
T ss_dssp EHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEE
T ss_pred chhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEE
Confidence 444433332 222333333333
Q ss_pred ---cccchhHHHHHHhcCCCCceEEeccCCCCCCCCCCCcchHHHHH--HHhCCCCCceehhcccCCcHHHH-HHHHhhC
Q 007912 324 ---DYIEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSLTEQGLVL--VSEGCPKLESVLYFCRRMSNDAL-VTIAKNR 397 (585)
Q Consensus 324 ---~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~~--l~~~~~~L~~L~~~~~~~~~~~~-~~l~~~~ 397 (585)
++--...-..+...+++|+.|++++ +.+++..... ....+++|+.|.+..+.++.... ......+
T Consensus 316 ~l~~n~l~~ip~~~~~~l~~L~~L~Ls~---------N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l 386 (549)
T 2z81_A 316 TVENSKVFLVPCSFSQHLKSLEFLDLSE---------NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386 (549)
T ss_dssp EEESSCCCCCCHHHHHHCTTCCEEECCS---------SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC
T ss_pred EeccCccccCCHHHHhcCccccEEEccC---------CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcC
Confidence 2100000011222456666666652 2343322211 12335666666555455543321 1223456
Q ss_pred CCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHH
Q 007912 398 PSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHH 476 (585)
Q Consensus 398 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~ 476 (585)
++|+.|+++++.... +. ..+..+++|++|++++ .++... ....++|+.|++++|.+++.
T Consensus 387 ~~L~~L~Ls~N~l~~---lp---------~~~~~~~~L~~L~Ls~N~l~~l~----~~~~~~L~~L~Ls~N~l~~~---- 446 (549)
T 2z81_A 387 KNLTSLDISRNTFHP---MP---------DSCQWPEKMRFLNLSSTGIRVVK----TCIPQTLEVLDVSNNNLDSF---- 446 (549)
T ss_dssp TTCCEEECTTCCCCC---CC---------SCCCCCTTCCEEECTTSCCSCCC----TTSCTTCSEEECCSSCCSCC----
T ss_pred CCCCEEECCCCCCcc---CC---------hhhcccccccEEECCCCCccccc----chhcCCceEEECCCCChhhh----
Confidence 667776666543211 11 0123445666666655 221100 00124566666666665442
Q ss_pred HHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCHHHHHHHHhhCCCcEEEEecCCC
Q 007912 477 VLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFEACKLLGQKMPRLNVEVIDESG 543 (585)
Q Consensus 477 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~~~~~l~~~~~~~~~ 543 (585)
...+++|++|++++|+++.- .. ...+++|+.|++++|+++......+ ..++.++...+.+++
T Consensus 447 -~~~l~~L~~L~Ls~N~l~~i--p~-~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 447 -SLFLPRLQELYISRNKLKTL--PD-ASLFPVLLVMKISRNQLKSVPDGIF-DRLTSLQKIWLHTNP 508 (549)
T ss_dssp -CCCCTTCCEEECCSSCCSSC--CC-GGGCTTCCEEECCSSCCCCCCTTGG-GGCTTCCEEECCSSC
T ss_pred -cccCChhcEEECCCCccCcC--CC-cccCccCCEEecCCCccCCcCHHHH-hcCcccCEEEecCCC
Confidence 13566677777777765421 11 2356667777777776543222222 345666666665553
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.82 E-value=6.3e-20 Score=186.47 Aligned_cols=323 Identities=16% Similarity=0.156 Sum_probs=200.1
Q ss_pred ccCCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCC
Q 007912 103 GGYPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPD 182 (585)
Q Consensus 103 ~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 182 (585)
..+++|++|+++++.+++... ...+++|++|+++++. ++... . ...+++|++|++++|.+.+... ..
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~L~~n~l~~~~~------~~ 131 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQ-IADIT--P-LANLTNLTGLTLFNNQITDIDP------LK 131 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECCSSCCCCCGG------GT
T ss_pred hhhcCCCEEECCCCccCCchh---hhccccCCEEECCCCc-cccCh--h-hcCCCCCCEEECCCCCCCCChH------Hc
Confidence 457888888888887665322 3466888888888763 22211 1 4478888888888887665432 23
Q ss_pred CCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHHHHHhhCCCceEEcCccccCCCCchhhhhhhhhh
Q 007912 183 TCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVELGTGTYSADLRPDIFSNLAGAF 262 (585)
Q Consensus 183 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~ 262 (585)
.+++|++|+++++. +.... . ...+++|+.|++.+.. ..+.. +..+++|+.|+++++....
T Consensus 132 ~l~~L~~L~l~~n~--l~~~~--~-~~~l~~L~~L~l~~~~--~~~~~-~~~l~~L~~L~l~~n~l~~------------ 191 (466)
T 1o6v_A 132 NLTNLNRLELSSNT--ISDIS--A-LSGLTSLQQLSFGNQV--TDLKP-LANLTTLERLDISSNKVSD------------ 191 (466)
T ss_dssp TCTTCSEEEEEEEE--ECCCG--G-GTTCTTCSEEEEEESC--CCCGG-GTTCTTCCEEECCSSCCCC------------
T ss_pred CCCCCCEEECCCCc--cCCCh--h-hccCCcccEeecCCcc--cCchh-hccCCCCCEEECcCCcCCC------------
Confidence 46688888888663 22211 1 4567888888875432 11111 5556777777765443221
Q ss_pred hcccccccccCccccCcCchhhHhhcCCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc-cchhHHHHHHhcCCCC
Q 007912 263 SGCKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY-IEDSGLEALAATCKDL 341 (585)
Q Consensus 263 ~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L 341 (585)
+.. ...+++|+.|++++|.+..... ...+++|+.|+++++ +.+. ..+ ..+++|
T Consensus 192 -------------------~~~-l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~l-~~l~~L 245 (466)
T 1o6v_A 192 -------------------ISV-LAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--GTL-ASLTNL 245 (466)
T ss_dssp -------------------CGG-GGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--GGG-GGCTTC
T ss_pred -------------------Chh-hccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc--hhh-hcCCCC
Confidence 011 2246677777777766443222 345677777777664 2221 111 256777
Q ss_pred ceEEeccCCCCCCCCCCCcchHHHHHHHhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcc
Q 007912 342 RELRVFPSEPFGDEPNVSLTEQGLVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPL 421 (585)
Q Consensus 342 ~~L~l~~~~~~~~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~ 421 (585)
+.|+++++ .++...- ...+++|+.|.+..+.++.... ...+++|+.|+++++.... +.
T Consensus 246 ~~L~l~~n---------~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~---~~---- 303 (466)
T 1o6v_A 246 TDLDLANN---------QISNLAP---LSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLED---IS---- 303 (466)
T ss_dssp SEEECCSS---------CCCCCGG---GTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSC---CG----
T ss_pred CEEECCCC---------ccccchh---hhcCCCCCEEECCCCccCcccc---ccCCCccCeEEcCCCcccC---ch----
Confidence 77777732 2221111 3346777777655555543221 3357888998887653311 11
Q ss_pred hhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHH
Q 007912 422 DVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALL 500 (585)
Q Consensus 422 ~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 500 (585)
. +..+++|+.|++++ .+++... ...+++|+.|++++|.+++.. . ...+++|++|++++|.+++...
T Consensus 304 --~----~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~- 370 (466)
T 1o6v_A 304 --P----ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDVS--S-LANLTNINWLSAGHNQISDLTP- 370 (466)
T ss_dssp --G----GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCBCGG-
T ss_pred --h----hcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCch--h-hccCCCCCEEeCCCCccCccch-
Confidence 0 56788999999987 4443322 246788999999999887652 3 3678999999999998876542
Q ss_pred HHHHhcccCCEEEeecccCCH
Q 007912 501 ANAAKLETMRSLWMSSCSVSF 521 (585)
Q Consensus 501 ~~~~~l~~L~~L~l~~~~i~~ 521 (585)
...+++|+.|++++|.++.
T Consensus 371 --~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 371 --LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp --GTTCTTCCEEECCCEEEEC
T ss_pred --hhcCCCCCEEeccCCcccC
Confidence 6788999999999998654
No 16
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=8e-19 Score=173.85 Aligned_cols=212 Identities=16% Similarity=0.132 Sum_probs=126.5
Q ss_pred cCCCCCEEEeecccCCchh---HHHHHhcCCCCcEEecccc-cchhHHHHHHh---cC---------CCCceEEeccCCC
Q 007912 288 VCSGLTTLNLSYATIQSPD---LIKLVSQCPKLQCLWVLDY-IEDSGLEALAA---TC---------KDLRELRVFPSEP 351 (585)
Q Consensus 288 ~~~~L~~L~L~~~~~~~~~---l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~---~~---------~~L~~L~l~~~~~ 351 (585)
.+++|++|++++|.+...+ +...+..+++|+.|+++++ +++.+...+.. .+ ++|++|++++
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~--- 168 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR--- 168 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS---
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC---
Confidence 4567777777776655543 2233445566666666654 33333322222 11 5566666652
Q ss_pred CCCCCCCCcchHHHHHHHhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHH----
Q 007912 352 FGDEPNVSLTEQGLVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGA---- 427 (585)
Q Consensus 352 ~~~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~---- 427 (585)
+.+++.++..++ .....+++|++|+++++. ++ +.++..
T Consensus 169 ------n~l~~~~~~~l~----------------------~~l~~~~~L~~L~L~~n~------l~----~~g~~~l~~~ 210 (386)
T 2ca6_A 169 ------NRLENGSMKEWA----------------------KTFQSHRLLHTVKMVQNG------IR----PEGIEHLLLE 210 (386)
T ss_dssp ------SCCTGGGHHHHH----------------------HHHHHCTTCCEEECCSSC------CC----HHHHHHHHHT
T ss_pred ------CCCCcHHHHHHH----------------------HHHHhCCCcCEEECcCCC------CC----HhHHHHHHHH
Confidence 234333333211 112245666666665432 22 334322
Q ss_pred HhhhCCCCcEEecCC-CCCHHHHHHHH---hhccccceeeccccCCCHHHHHHHHhc-----CCCCCeEEeeCCCCChHH
Q 007912 428 IVQHCKDLRRLSLSG-LLTDRVFEYIG---TYAKKLEMLSVAFAGESDLGLHHVLSG-----CDSLRKLEIMDCPFGDKA 498 (585)
Q Consensus 428 ~~~~~~~L~~L~l~~-~~~~~~~~~l~---~~~~~L~~L~l~~~~i~~~~~~~l~~~-----~~~L~~L~l~~~~~~~~~ 498 (585)
.+..+++|+.|+|++ .+++.+...+. ..+++|+.|+|++|.+++.+...+... +++|++|++++|.+++.+
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g 290 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH
Confidence 234667788888877 56655554443 346789999999999988876655442 788999999999998864
Q ss_pred HHHHH----HhcccCCEEEeecccCCHHH--HHHHHhhCCCcEEEEec
Q 007912 499 LLANA----AKLETMRSLWMSSCSVSFEA--CKLLGQKMPRLNVEVID 540 (585)
Q Consensus 499 ~~~~~----~~l~~L~~L~l~~~~i~~~~--~~~l~~~~~~l~~~~~~ 540 (585)
+..+. .++++|+.|++++|.++..+ +..+...+|.++...++
T Consensus 291 ~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~ 338 (386)
T 2ca6_A 291 VRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELD 338 (386)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEEC
T ss_pred HHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhh
Confidence 43332 55799999999999987766 56666666665544433
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.81 E-value=4.5e-23 Score=217.60 Aligned_cols=114 Identities=17% Similarity=0.070 Sum_probs=77.4
Q ss_pred hhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcc
Q 007912 429 VQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLE 507 (585)
Q Consensus 429 ~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 507 (585)
+..+++|+.|++++ .++..... ....+++|++|++++|.+++..+......+++|++|++++|.++.... ..+..++
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~ 497 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDG-IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW-GVFDTLH 497 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCT
T ss_pred hhccccCCEEECcCCCCCccchh-hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh-hhhcccc
Confidence 45678888888877 33221111 123467899999999888764333223678999999999998765432 2456789
Q ss_pred cCCEEEeecccCCHHHHHHHHhhCCCcEEEEecCCCCC
Q 007912 508 TMRSLWMSSCSVSFEACKLLGQKMPRLNVEVIDESGPP 545 (585)
Q Consensus 508 ~L~~L~l~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~ 545 (585)
+|+.|++++|+++......+ ..++.++...+..+...
T Consensus 498 ~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 498 RLQLLNMSHNNLLFLDSSHY-NQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp TCCEEECCSSCCSCEEGGGT-TTCTTCCEEECTTSCCC
T ss_pred cCCEEECCCCcCCCcCHHHc-cCCCcCCEEECCCCcCc
Confidence 99999999998866443444 35788888888777544
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=4.2e-23 Score=216.34 Aligned_cols=110 Identities=19% Similarity=0.211 Sum_probs=46.4
Q ss_pred cCCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCC
Q 007912 104 GYPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDT 183 (585)
Q Consensus 104 ~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 183 (585)
.+++|++|++++|.++......+ ..+++|++|+++++. ++.... ..+..+++|++|++++|.+.......+ ..
T Consensus 50 ~l~~L~~L~Ls~n~i~~i~~~~~-~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~----~~ 122 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILTGNP-IQSLAL-GAFSGLSSLQKLVAVETNLASLENFPI----GH 122 (570)
T ss_dssp TCSSCCEEECTTCCCCEECTTTT-TTCTTCCEEECTTCC-CCEECT-TTTTTCTTCCEEECTTSCCCCSTTCSC----TT
T ss_pred CCCCceEEECCCCcCCccCcccc-cCchhCCEEeCcCCc-CCccCH-hhhcCccccccccccccccccCCCccc----cc
Confidence 45556666666554443211111 234556666665542 211110 112245556666665555443322112 23
Q ss_pred CCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCC
Q 007912 184 CTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRA 222 (585)
Q Consensus 184 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 222 (585)
+++|++|+++++. +....+...+..+++|++|+++++
T Consensus 123 l~~L~~L~L~~n~--l~~~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 123 LKTLKELNVAHNL--IQSFKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp CTTCCEEECCSSC--CCCCCCCGGGGGCTTCCEEECTTS
T ss_pred cccccEEecCCCc--cceecChhhhcccCCCCEEeCcCC
Confidence 4455555555441 211001111234555555555544
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=2.1e-20 Score=194.71 Aligned_cols=401 Identities=14% Similarity=0.093 Sum_probs=226.9
Q ss_pred HHhhCCCceEEEecCCCCCCCCCCCcCCCCCcchhHHHHHHccCCCCcEEEecccccChHHHHHHHHhCCCCcEEeeccc
Q 007912 62 AIRRFPEVRSVELKGKPHFADFNLVPEGWGGYVYPWIRAMAGGYPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSC 141 (585)
Q Consensus 62 l~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 141 (585)
.+..+++|+.|+++++. +... .+ ..+..+++|++|+++++.++......+. .+++|++|+++++
T Consensus 45 ~~~~l~~L~~L~Ls~n~-i~~~--~~------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n 108 (549)
T 2z81_A 45 DLRACANLQVLILKSSR-INTI--EG------------DAFYSLGSLEHLDLSDNHLSSLSSSWFG-PLSSLKYLNLMGN 108 (549)
T ss_dssp TTSSCTTCCEEECTTSC-CCEE--CT------------TTTTTCTTCCEEECTTSCCCSCCHHHHT-TCTTCCEEECTTC
T ss_pred hhhcCCcccEEECCCCC-cCcc--Ch------------hhccccccCCEEECCCCccCccCHHHhc-cCCCCcEEECCCC
Confidence 45667888888888653 1111 00 1124567788888888776654333333 5677888888776
Q ss_pred CCCCHHHHHHHHhcCCCCcEEEcccCC-CCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeC
Q 007912 142 EGFSTHGLAAIAADCKNLKELDLWESD-VEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLN 220 (585)
Q Consensus 142 ~~~~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~ 220 (585)
. ++.......+..+++|++|++++|. +.......+ ..+++|++|+++++ .+..... .....+++|++|+++
T Consensus 109 ~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~----~~l~~L~~L~L~~n--~l~~~~~-~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 109 P-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF----AGLTSLNELEIKAL--SLRNYQS-QSLKSIRDIHHLTLH 180 (549)
T ss_dssp C-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT----TTCCEEEEEEEEET--TCCEECT-TTTTTCSEEEEEEEE
T ss_pred c-ccccchhhhhhccCCccEEECCCCccccccCHhhh----hcccccCeeeccCC--cccccCh-hhhhccccCceEecc
Confidence 3 2211111223467778888887775 332221222 23457777777655 2221111 112334556666665
Q ss_pred CCCChHHHHHHHhhCCCceEEcCccccCCCC-------------------------chhhhhhhhhhhccccccccc--C
Q 007912 221 RAVPLEKLAHLLRQAPQLVELGTGTYSADLR-------------------------PDIFSNLAGAFSGCKELKSLS--G 273 (585)
Q Consensus 221 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-------------------------~~~~~~l~~~~~~~~~L~~L~--~ 273 (585)
.+.....-...+..+++|+.|++++...... ...+..+......+++|+.+. .
T Consensus 181 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~ 260 (549)
T 2z81_A 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260 (549)
T ss_dssp CSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred cCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence 5442211122233455666665544332211 001112222223333343331 0
Q ss_pred cc--c---------------------------cC----cCchhhHhhcCCCCCEEEeecccCCchhHHHHHhcCCCCcEE
Q 007912 274 FW--D---------------------------VV----PAYLPAVYSVCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCL 320 (585)
Q Consensus 274 ~~--~---------------------------~~----~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L 320 (585)
.. . .. ...+..+....++|+.|++++|.+.... ..+...+++|+.|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip-~~~~~~l~~L~~L 339 (549)
T 2z81_A 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP-CSFSQHLKSLEFL 339 (549)
T ss_dssp CEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCC-HHHHHHCTTCCEE
T ss_pred ccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCC-HHHHhcCccccEE
Confidence 00 0 00 0111222334678999999988754322 2344678999999
Q ss_pred ecccc-cchhHHHHH--HhcCCCCceEEeccCCCCCCCCCCCcchHH-HHHHHhCCCCCceehhcccCCcHHHHHHHHhh
Q 007912 321 WVLDY-IEDSGLEAL--AATCKDLRELRVFPSEPFGDEPNVSLTEQG-LVLVSEGCPKLESVLYFCRRMSNDALVTIAKN 396 (585)
Q Consensus 321 ~l~~~-~~~~~~~~l--~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~ 396 (585)
+++++ +.+...... ...+++|+.|++++ +.++... .......+++|++|++..+.++. +......
T Consensus 340 ~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~---------N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~ 408 (549)
T 2z81_A 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQ---------NHLRSMQKTGEILLTLKNLTSLDISRNTFHP--MPDSCQW 408 (549)
T ss_dssp ECCSSCCCHHHHHHHTCTTSSTTCCEEECTT---------SCCCCHHHHHHHGGGCTTCCEEECTTCCCCC--CCSCCCC
T ss_pred EccCCccccccccchhhhhccccCcEEEccC---------CcccccccchhhhhcCCCCCEEECCCCCCcc--CChhhcc
Confidence 99986 444332221 23689999999984 3454432 22345569999999766667662 2222234
Q ss_pred CCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHH
Q 007912 397 RPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLH 475 (585)
Q Consensus 397 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~ 475 (585)
+++|++|+++++... .+. . ...++|+.|++++ .++.. ...+++|++|++++|.++.. .
T Consensus 409 ~~~L~~L~Ls~N~l~---~l~----~-------~~~~~L~~L~Ls~N~l~~~-----~~~l~~L~~L~Ls~N~l~~i--p 467 (549)
T 2z81_A 409 PEKMRFLNLSSTGIR---VVK----T-------CIPQTLEVLDVSNNNLDSF-----SLFLPRLQELYISRNKLKTL--P 467 (549)
T ss_dssp CTTCCEEECTTSCCS---CCC----T-------TSCTTCSEEECCSSCCSCC-----CCCCTTCCEEECCSSCCSSC--C
T ss_pred cccccEEECCCCCcc---ccc----c-------hhcCCceEEECCCCChhhh-----cccCChhcEEECCCCccCcC--C
Confidence 689999999876431 111 0 1125899999988 44432 14578999999999998632 2
Q ss_pred HHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCH
Q 007912 476 HVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSF 521 (585)
Q Consensus 476 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~ 521 (585)
.. ..+++|++|++++|.++.... ..+..+++|+.|++++|+++.
T Consensus 468 ~~-~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 468 DA-SLFPVLLVMKISRNQLKSVPD-GIFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp CG-GGCTTCCEEECCSSCCCCCCT-TGGGGCTTCCEEECCSSCBCC
T ss_pred Cc-ccCccCCEEecCCCccCCcCH-HHHhcCcccCEEEecCCCccC
Confidence 22 468999999999998775331 245788999999999998643
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=3.3e-21 Score=199.29 Aligned_cols=158 Identities=13% Similarity=0.180 Sum_probs=87.9
Q ss_pred cCCCCceEEeccCCCCCCCCCCCcchHHHHHHHhCCCCCceehhcccCCcHH-HHHHHHhhCCCCceeeeeecCCCCCCC
Q 007912 337 TCKDLRELRVFPSEPFGDEPNVSLTEQGLVLVSEGCPKLESVLYFCRRMSND-ALVTIAKNRPSMIRFRLCIIDPQTPDY 415 (585)
Q Consensus 337 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~~~~ 415 (585)
.+++|++|++++ +.+++.... ....+++|+.|.+..+.++.. .+......+++|+.|+++++.... .
T Consensus 322 ~l~~L~~L~Ls~---------n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~--~ 389 (520)
T 2z7x_B 322 KISPFLHLDFSN---------NLLTDTVFE-NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY--D 389 (520)
T ss_dssp SCCCCCEEECCS---------SCCCTTTTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC--C
T ss_pred hCCcccEEEeEC---------CccChhhhh-hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc--c
Confidence 566677777763 233321111 113467777776665666542 233334457778888777653310 0
Q ss_pred CCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCC
Q 007912 416 LTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPF 494 (585)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~ 494 (585)
+. ...+..+++|++|++++ .+++.....+ .++|+.|++++|.++.... .+ ..+++|++|++++|++
T Consensus 390 l~--------~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~~L~~L~Ls~N~l~~ip~-~~-~~l~~L~~L~L~~N~l 456 (520)
T 2z7x_B 390 EK--------KGDCSWTKSLLSLNMSSNILTDTIFRCL---PPRIKVLDLHSNKIKSIPK-QV-VKLEALQELNVASNQL 456 (520)
T ss_dssp GG--------GCSCCCCTTCCEEECCSSCCCGGGGGSC---CTTCCEEECCSSCCCCCCG-GG-GGCTTCCEEECCSSCC
T ss_pred cc--------cchhccCccCCEEECcCCCCCcchhhhh---cccCCEEECCCCcccccch-hh-hcCCCCCEEECCCCcC
Confidence 11 00134567788888876 4443322211 2578888888887763211 12 3677888888888866
Q ss_pred ChHHHHHHHHhcccCCEEEeecccCC
Q 007912 495 GDKALLANAAKLETMRSLWMSSCSVS 520 (585)
Q Consensus 495 ~~~~~~~~~~~l~~L~~L~l~~~~i~ 520 (585)
+..... .+..+++|+.|++++|+++
T Consensus 457 ~~l~~~-~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 457 KSVPDG-IFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CCCCTT-TTTTCTTCCEEECCSSCBC
T ss_pred CccCHH-HhccCCcccEEECcCCCCc
Confidence 632211 3456777888888888764
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=4.3e-21 Score=198.44 Aligned_cols=158 Identities=10% Similarity=0.055 Sum_probs=82.9
Q ss_pred CCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHH
Q 007912 371 GCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVF 449 (585)
Q Consensus 371 ~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~ 449 (585)
.+++|++|++..+.++......+ ..+++|+.|+++++.. +. -..+...+..+++|+.|++++ .+++...
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l------~~---l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~ 391 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMNQL------KE---LSKIAEMTTQMKSLQQLDISQNSVSYDEK 391 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTC-CCCSSCCEEECCSSCC------CB---HHHHHHHHTTCTTCCEEECCSSCCBCCGG
T ss_pred hCCcccEEEeECCccChhhhhhh-ccCCCCCEEEccCCcc------Cc---cccchHHHhhCCCCCEEECCCCcCCcccc
Confidence 35666666555455543222111 2456667776665422 10 112334456667777777766 3332111
Q ss_pred HHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCHHHHHHHHh
Q 007912 450 EYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFEACKLLGQ 529 (585)
Q Consensus 450 ~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~ 529 (585)
......+++|+.|++++|.+++.....+ .++|++|++++|.++. +...+..+++|++|++++|+++...... -.
T Consensus 392 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~L~~N~l~~l~~~~-~~ 465 (520)
T 2z7x_B 392 KGDCSWTKSLLSLNMSSNILTDTIFRCL---PPRIKVLDLHSNKIKS--IPKQVVKLEALQELNVASNQLKSVPDGI-FD 465 (520)
T ss_dssp GCSCCCCTTCCEEECCSSCCCGGGGGSC---CTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCCCTTT-TT
T ss_pred cchhccCccCCEEECcCCCCCcchhhhh---cccCCEEECCCCcccc--cchhhhcCCCCCEEECCCCcCCccCHHH-hc
Confidence 1112234667777777777665433221 1577777777776652 2222336777777777777765322111 23
Q ss_pred hCCCcEEEEecCCCC
Q 007912 530 KMPRLNVEVIDESGP 544 (585)
Q Consensus 530 ~~~~l~~~~~~~~~~ 544 (585)
.++.++...+.++++
T Consensus 466 ~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 466 RLTSLQKIWLHTNPW 480 (520)
T ss_dssp TCTTCCEEECCSSCB
T ss_pred cCCcccEEECcCCCC
Confidence 466676666666643
No 22
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.79 E-value=4.5e-21 Score=205.14 Aligned_cols=89 Identities=10% Similarity=0.053 Sum_probs=58.7
Q ss_pred hccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCHHHHHHHHhhCCCc
Q 007912 455 YAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFEACKLLGQKMPRL 534 (585)
Q Consensus 455 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~~~~~l 534 (585)
.+++|+.|++++|.++......+ .++++|++|++++|.++.... ..+..+++|+.|++++|+++......+...++.+
T Consensus 534 ~l~~L~~L~L~~N~l~~i~~~~~-~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L 611 (680)
T 1ziw_A 534 GLSHLHILNLESNGFDEIPVEVF-KDLFELKIIDLGLNNLNTLPA-SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL 611 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTC
T ss_pred CCCCCCEEECCCCCCCCCCHHHc-ccccCcceeECCCCCCCcCCH-hHhCCCCCCCEEECCCCcCCccChhHhccccccc
Confidence 35667777777777664333223 567888888888887664221 1345778899999999987665555554456777
Q ss_pred EEEEecCCCCC
Q 007912 535 NVEVIDESGPP 545 (585)
Q Consensus 535 ~~~~~~~~~~~ 545 (585)
+...+.+++..
T Consensus 612 ~~l~l~~N~~~ 622 (680)
T 1ziw_A 612 TELDMRFNPFD 622 (680)
T ss_dssp SEEECTTCCCC
T ss_pred CEEEccCCCcc
Confidence 77777776543
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.79 E-value=1.5e-19 Score=183.62 Aligned_cols=339 Identities=17% Similarity=0.180 Sum_probs=221.8
Q ss_pred CCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCC
Q 007912 105 YPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTC 184 (585)
Q Consensus 105 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~ 184 (585)
++++++|++.++.+... ..+ ..+++|++|+++++. ++... . +..+++|++|++++|.+..... ...+
T Consensus 45 l~~l~~L~l~~~~i~~l--~~~-~~l~~L~~L~Ls~n~-l~~~~--~-~~~l~~L~~L~l~~n~l~~~~~------~~~l 111 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSI--DGV-EYLNNLTQINFSNNQ-LTDIT--P-LKNLTKLVDILMNNNQIADITP------LANL 111 (466)
T ss_dssp HHTCCEEECCSSCCCCC--TTG-GGCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECCSSCCCCCGG------GTTC
T ss_pred hccccEEecCCCCCccC--cch-hhhcCCCEEECCCCc-cCCch--h-hhccccCCEEECCCCccccChh------hcCC
Confidence 35678888877665431 222 356788888888763 32211 1 4477888888888887665432 2346
Q ss_pred CcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHHHHHhhCCCceEEcCccccCCCCchhhhhhhhhhhc
Q 007912 185 TSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVELGTGTYSADLRPDIFSNLAGAFSG 264 (585)
Q Consensus 185 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~ 264 (585)
++|++|+++++. +..... ...+++|++|+++++. +..++ .+..+++|+.|.++..
T Consensus 112 ~~L~~L~L~~n~--l~~~~~---~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~~------------------ 166 (466)
T 1o6v_A 112 TNLTGLTLFNNQ--ITDIDP---LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGNQ------------------ 166 (466)
T ss_dssp TTCCEEECCSSC--CCCCGG---GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEES------------------
T ss_pred CCCCEEECCCCC--CCCChH---HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecCCc------------------
Confidence 688888888663 322111 4567788888877664 11111 1344555555544210
Q ss_pred ccccccccCccccCcCchhhHhhcCCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc-cchhHHHHHHhcCCCCce
Q 007912 265 CKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY-IEDSGLEALAATCKDLRE 343 (585)
Q Consensus 265 ~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~ 343 (585)
. ..+.. ...+++|+.|++++|.+.... .+..+++|+.|++.++ +.+... ...+++|+.
T Consensus 167 ------------~--~~~~~-~~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~ 225 (466)
T 1o6v_A 167 ------------V--TDLKP-LANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITP---LGILTNLDE 225 (466)
T ss_dssp ------------C--CCCGG-GTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCE
T ss_pred ------------c--cCchh-hccCCCCCEEECcCCcCCCCh---hhccCCCCCEEEecCCccccccc---ccccCCCCE
Confidence 0 01111 345899999999999855432 2568899999999986 332111 246899999
Q ss_pred EEeccCCCCCCCCCCCcchHHHHHHHhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchh
Q 007912 344 LRVFPSEPFGDEPNVSLTEQGLVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDV 423 (585)
Q Consensus 344 L~l~~~~~~~~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 423 (585)
|+++++ .+++.+ ....+++|+.|++..+.++.... ...+++|+.|+++++.. +.
T Consensus 226 L~l~~n---------~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l------~~----- 279 (466)
T 1o6v_A 226 LSLNGN---------QLKDIG---TLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQI------SN----- 279 (466)
T ss_dssp EECCSS---------CCCCCG---GGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCC------CC-----
T ss_pred EECCCC---------Ccccch---hhhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCcc------Cc-----
Confidence 999843 333321 12358999999766666654322 34689999999987543 21
Q ss_pred hHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHH
Q 007912 424 GFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLAN 502 (585)
Q Consensus 424 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 502 (585)
+.. +..+++|+.|++++ .+++... ...+++|+.|++++|.+++... ...+++|++|++++|.+++.. .
T Consensus 280 -~~~-~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~---~ 348 (466)
T 1o6v_A 280 -ISP-LAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDVS---S 348 (466)
T ss_dssp -CGG-GTTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCCG---G
T ss_pred -ccc-ccCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCch---h
Confidence 011 56789999999988 4443221 3467899999999999876544 368999999999999887652 5
Q ss_pred HHhcccCCEEEeecccCCHHHHHHHHhhCCCcEEEEecCC
Q 007912 503 AAKLETMRSLWMSSCSVSFEACKLLGQKMPRLNVEVIDES 542 (585)
Q Consensus 503 ~~~l~~L~~L~l~~~~i~~~~~~~l~~~~~~l~~~~~~~~ 542 (585)
+..+++|+.|++++|+++.... ...++.++...+..+
T Consensus 349 l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQ 385 (466)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCCE
T ss_pred hccCCCCCEEeCCCCccCccch---hhcCCCCCEEeccCC
Confidence 6789999999999999865443 357888877666655
No 24
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.78 E-value=5.6e-18 Score=167.77 Aligned_cols=190 Identities=13% Similarity=0.113 Sum_probs=112.2
Q ss_pred cCCCCCEEEeecccCCchhHHHH---HhcC---------CCCcEEecccc-cchhHHHHH---HhcCCCCceEEeccCCC
Q 007912 288 VCSGLTTLNLSYATIQSPDLIKL---VSQC---------PKLQCLWVLDY-IEDSGLEAL---AATCKDLRELRVFPSEP 351 (585)
Q Consensus 288 ~~~~L~~L~L~~~~~~~~~l~~l---~~~~---------~~L~~L~l~~~-~~~~~~~~l---~~~~~~L~~L~l~~~~~ 351 (585)
.+++|++|++++|.+++.....+ +..+ ++|+.|+++++ +++.++..+ ...+++|++|++++
T Consensus 120 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~--- 196 (386)
T 2ca6_A 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ--- 196 (386)
T ss_dssp HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCS---
T ss_pred hCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcC---
Confidence 35566666666655543332222 2222 66666666654 444444432 23677788888873
Q ss_pred CCCCCCCCcchHHHHHHHhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchh---hHHHH
Q 007912 352 FGDEPNVSLTEQGLVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDV---GFGAI 428 (585)
Q Consensus 352 ~~~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~---~~~~~ 428 (585)
+.+++.++..+... ....+++|+.|+|+++. ++ +. .+...
T Consensus 197 ------n~l~~~g~~~l~~~---------------------~l~~~~~L~~L~Ls~n~------l~----~~g~~~l~~~ 239 (386)
T 2ca6_A 197 ------NGIRPEGIEHLLLE---------------------GLAYCQELKVLDLQDNT------FT----HLGSSALAIA 239 (386)
T ss_dssp ------SCCCHHHHHHHHHT---------------------TGGGCTTCCEEECCSSC------CH----HHHHHHHHHH
T ss_pred ------CCCCHhHHHHHHHH---------------------HhhcCCCccEEECcCCC------CC----cHHHHHHHHH
Confidence 35665554443320 01134455555554321 11 21 12333
Q ss_pred hhhCCCCcEEecCC-CCCHHHHHHHHhh-----ccccceeeccccCCCHHHHHHHH----hcCCCCCeEEeeCCCCChHH
Q 007912 429 VQHCKDLRRLSLSG-LLTDRVFEYIGTY-----AKKLEMLSVAFAGESDLGLHHVL----SGCDSLRKLEIMDCPFGDKA 498 (585)
Q Consensus 429 ~~~~~~L~~L~l~~-~~~~~~~~~l~~~-----~~~L~~L~l~~~~i~~~~~~~l~----~~~~~L~~L~l~~~~~~~~~ 498 (585)
+..+++|++|+|++ .+++.+...+... +++|+.|+|++|.+++.++..+. .++++|++|++++|.+++..
T Consensus 240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 55667777777776 6677666655443 67899999999999886554443 44799999999999887765
Q ss_pred --HHHHHHhcccCCEEEeecc
Q 007912 499 --LLANAAKLETMRSLWMSSC 517 (585)
Q Consensus 499 --~~~~~~~l~~L~~L~l~~~ 517 (585)
+..+...+++++.+.+...
T Consensus 320 ~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 320 DVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp HHHHHHHHHHHHHTCCEECCC
T ss_pred hHHHHHHHHhhhcCcchhhhc
Confidence 5666777787776666554
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.78 E-value=5.5e-18 Score=165.41 Aligned_cols=282 Identities=18% Similarity=0.191 Sum_probs=149.8
Q ss_pred ccCCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCC
Q 007912 103 GGYPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPD 182 (585)
Q Consensus 103 ~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 182 (585)
..+++|++|+++++.+++... ...+++|++|+++++. ++. +.. +..+++|++|++++|.+.+... ..
T Consensus 63 ~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~-i~~--~~~-~~~l~~L~~L~l~~n~i~~~~~------~~ 129 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNK-ITD--ISA-LQNLTNLRELYLNEDNISDISP------LA 129 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCC--CGG-GTTCTTCSEEECTTSCCCCCGG------GT
T ss_pred hhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCc-ccC--chH-HcCCCcCCEEECcCCcccCchh------hc
Confidence 446677777777766554321 2355667777776652 222 112 3366677777777666554321 22
Q ss_pred CCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHHHHHhhCCCceEEcCccccCCCCchhhhhhhhhh
Q 007912 183 TCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVELGTGTYSADLRPDIFSNLAGAF 262 (585)
Q Consensus 183 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~ 262 (585)
.+++|++|+++++........ ...+++|++|+++++.-. .+.. +.
T Consensus 130 ~l~~L~~L~l~~n~~~~~~~~----~~~l~~L~~L~l~~~~~~-~~~~-~~----------------------------- 174 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDLSP----LSNMTGLNYLTVTESKVK-DVTP-IA----------------------------- 174 (347)
T ss_dssp TCTTCCEEECTTCTTCCCCGG----GTTCTTCCEEECCSSCCC-CCGG-GG-----------------------------
T ss_pred cCCceeEEECCCCCCcccccc----hhhCCCCcEEEecCCCcC-Cchh-hc-----------------------------
Confidence 345666666665521111111 334556666666554310 0000 22
Q ss_pred hcccccccccCccccCcCchhhHhhcCCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc-cchhHHHHHHhcCCCC
Q 007912 263 SGCKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY-IEDSGLEALAATCKDL 341 (585)
Q Consensus 263 ~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L 341 (585)
.+++|+.|++++|.+..... +..+++|+.|.+.++ +.+... ...+++|
T Consensus 175 -------------------------~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L 223 (347)
T 4fmz_A 175 -------------------------NLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQITDITP---VANMTRL 223 (347)
T ss_dssp -------------------------GCTTCSEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG---GGGCTTC
T ss_pred -------------------------cCCCCCEEEccCCccccccc---ccCCCccceeecccCCCCCCch---hhcCCcC
Confidence 24455555555544322211 334455555555443 111110 1245555
Q ss_pred ceEEeccCCCCCCCCCCCcchHHHHHHHhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcc
Q 007912 342 RELRVFPSEPFGDEPNVSLTEQGLVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPL 421 (585)
Q Consensus 342 ~~L~l~~~~~~~~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~ 421 (585)
++|+++++ .++.... ...+++|++|.+..+.++.. .. ...+++|+.|+++++.. +
T Consensus 224 ~~L~l~~n---------~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~l~~n~l------~---- 278 (347)
T 4fmz_A 224 NSLKIGNN---------KITDLSP---LANLSQLTWLEIGTNQISDI--NA-VKDLTKLKMLNVGSNQI------S---- 278 (347)
T ss_dssp CEEECCSS---------CCCCCGG---GTTCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCC------C----
T ss_pred CEEEccCC---------ccCCCcc---hhcCCCCCEEECCCCccCCC--hh-HhcCCCcCEEEccCCcc------C----
Confidence 55555531 1211111 22355566664443444432 11 23578899998876533 2
Q ss_pred hhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCC
Q 007912 422 DVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFG 495 (585)
Q Consensus 422 ~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~ 495 (585)
+. ..+..+++|+.|++++ .+++.....+. .+++|+.|++++|++++... ...+++|++|++++|.++
T Consensus 279 ~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 279 DI---SVLNNLSQLNSLFLNNNQLGNEDMEVIG-GLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CC---GGGGGCTTCSEEECCSSCCCGGGHHHHH-TCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC---
T ss_pred CC---hhhcCCCCCCEEECcCCcCCCcChhHhh-ccccCCEEEccCCccccccC---hhhhhccceeehhhhccc
Confidence 11 1256789999999988 56665555553 47889999999999876544 377999999999999865
No 26
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=6.9e-18 Score=164.00 Aligned_cols=203 Identities=20% Similarity=0.242 Sum_probs=134.8
Q ss_pred cCCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc-cchhHHHHHHhcCCCCceEEeccCCCCCCCCCCCcchHHHH
Q 007912 288 VCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY-IEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSLTEQGLV 366 (585)
Q Consensus 288 ~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~ 366 (585)
.+++|++|++++|.+.+..+..++..+++|++|+++++ +++.....+. .+++|++|+++ +|..+++.++.
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~--------~~~~l~~~~l~ 161 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLS--------GCSGFSEFALQ 161 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECT--------TCBSCCHHHHH
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh-cCCCCCEEECC--------CCCCCCHHHHH
Confidence 36888999998888777767777777788888887775 4444444444 47777777777 33445554444
Q ss_pred HHHhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCC-CCcEEecCC---
Q 007912 367 LVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCK-DLRRLSLSG--- 442 (585)
Q Consensus 367 ~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~--- 442 (585)
.... .+++|++|+++++ ..++ +.++...+..++ +|++|++++
T Consensus 162 ~~~~-------------------------~~~~L~~L~l~~~-----~~l~----~~~~~~~~~~l~~~L~~L~l~~~~~ 207 (336)
T 2ast_B 162 TLLS-------------------------SCSRLDELNLSWC-----FDFT----EKHVQVAVAHVSETITQLNLSGYRK 207 (336)
T ss_dssp HHHH-------------------------HCTTCCEEECCCC-----TTCC----HHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred HHHh-------------------------cCCCCCEEcCCCC-----CCcC----hHHHHHHHHhcccCCCEEEeCCCcc
Confidence 4333 4555555555432 1233 334455555566 666666655
Q ss_pred CCCHHHHHHHHhhccccceeeccccC-CCHHHHHHHHhcCCCCCeEEeeCC-CCChHHHHHHHHhcccCCEEEeecccCC
Q 007912 443 LLTDRVFEYIGTYAKKLEMLSVAFAG-ESDLGLHHVLSGCDSLRKLEIMDC-PFGDKALLANAAKLETMRSLWMSSCSVS 520 (585)
Q Consensus 443 ~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 520 (585)
.+++..+......+++|+.|++++|. +++..+..+ ..+++|++|++++| .+++.++. .+..+++|+.|++++| ++
T Consensus 208 ~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~-i~ 284 (336)
T 2ast_B 208 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI-VP 284 (336)
T ss_dssp GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTS-SC
T ss_pred cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHHHH-HHhcCCCCCEEeccCc-cC
Confidence 25556666666667777777887777 677766665 66788888888888 66666543 3456888888888888 88
Q ss_pred HHHHHHHHhhCCCcEE
Q 007912 521 FEACKLLGQKMPRLNV 536 (585)
Q Consensus 521 ~~~~~~l~~~~~~l~~ 536 (585)
++++..+...+|.+++
T Consensus 285 ~~~~~~l~~~l~~L~l 300 (336)
T 2ast_B 285 DGTLQLLKEALPHLQI 300 (336)
T ss_dssp TTCHHHHHHHSTTSEE
T ss_pred HHHHHHHHhhCcceEE
Confidence 8788888777888774
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.77 E-value=8.1e-22 Score=206.59 Aligned_cols=134 Identities=18% Similarity=0.106 Sum_probs=92.4
Q ss_pred CCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCC
Q 007912 106 PWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCT 185 (585)
Q Consensus 106 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 185 (585)
+++++|+++++.++......+ ..+++|++|+++++. ++... ...+..+++|++|++++|.+.......+. .++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~-i~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~ 100 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCE-IQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFS----GLS 100 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTT-TTCSSCCEEECTTCC-CCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTT----TCT
T ss_pred ccccEEEccCCccCccChhHh-hCCCCceEEECCCCc-CCccC-cccccCchhCCEEeCcCCcCCccCHhhhc----Ccc
Confidence 579999999987765332223 367999999999873 43221 12234789999999999987765433333 467
Q ss_pred cccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChH-HHHHHHhhCCCceEEcCccccCC
Q 007912 186 SLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLE-KLAHLLRQAPQLVELGTGTYSAD 249 (585)
Q Consensus 186 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~ 249 (585)
+|++|+++++. +...... .+..+++|++|+++++.-.. .++..+..+++|++|++++....
T Consensus 101 ~L~~L~L~~n~--l~~l~~~-~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 101 SLQKLVAVETN--LASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TCCEEECTTSC--CCCSTTC-SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred ccccccccccc--cccCCCc-cccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 99999999773 2211100 14568999999999885322 34566788999999999776543
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.76 E-value=3e-20 Score=188.83 Aligned_cols=365 Identities=11% Similarity=0.045 Sum_probs=209.8
Q ss_pred CCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCC
Q 007912 106 PWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCT 185 (585)
Q Consensus 106 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 185 (585)
++|++|+++++.++......+ ..+++|++|+++++...... ....+..+++|++|++++|.+.......+. .++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~~~~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~ 103 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSF-SRLQDLQFLKVEQQTPGLVI-RNNTFRGLSSLIILKLDYNQFLQLETGAFN----GLA 103 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTT-SSCTTCCEEECCCCSTTCEE-CTTTTTTCTTCCEEECTTCTTCEECTTTTT----TCT
T ss_pred CccCEEEecCCccCcCChhHh-ccCccccEEECcCCcccceE-CcccccccccCCEEeCCCCccCccChhhcc----Ccc
Confidence 578888888877665322222 25678888888876321110 012234678888888888877654333333 356
Q ss_pred cccEEEeccccCcCCHHHHH-HHHHhCCCCceEEeCCCCChHHHHH-HHhhCCCceEEcCccccCCCCchhhhhhhhhhh
Q 007912 186 SLVSLNIACLGSEVSFSALE-RLVVRCPNLRTLRLNRAVPLEKLAH-LLRQAPQLVELGTGTYSADLRPDIFSNLAGAFS 263 (585)
Q Consensus 186 ~L~~L~l~~~~~~~~~~~l~-~l~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 263 (585)
+|++|+++++ .+...... .....+++|++|+++++.-....+. ++..+++|++|++++.....
T Consensus 104 ~L~~L~L~~n--~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~------------- 168 (455)
T 3v47_A 104 NLEVLTLTQC--NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS------------- 168 (455)
T ss_dssp TCCEEECTTS--CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC-------------
T ss_pred cCCEEeCCCC--CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc-------------
Confidence 8888888877 44433222 1245578888888887652221121 24556666666665433221
Q ss_pred cccccccccCccccCcCchhhHhhcCCCCCEEEeecccCCchhHH-------HHHhcCCCCcEEecccc-cchhHHHHHH
Q 007912 264 GCKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYATIQSPDLI-------KLVSQCPKLQCLWVLDY-IEDSGLEALA 335 (585)
Q Consensus 264 ~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~-------~l~~~~~~L~~L~l~~~-~~~~~~~~l~ 335 (585)
.....+..+ ..++|+.|+++++.+...... .-...+++|+.|+++++ +.......+.
T Consensus 169 -------------~~~~~l~~l--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 233 (455)
T 3v47_A 169 -------------ICEEDLLNF--QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF 233 (455)
T ss_dssp -------------CCTTTSGGG--TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHH
T ss_pred -------------cChhhhhcc--ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhh
Confidence 111111111 136788888888774332111 01124477888998886 4444444333
Q ss_pred h--cCCCCceEEeccCCCCCC-CCCCCcchHHHHHH-HhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCC
Q 007912 336 A--TCKDLRELRVFPSEPFGD-EPNVSLTEQGLVLV-SEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQ 411 (585)
Q Consensus 336 ~--~~~~L~~L~l~~~~~~~~-~~~~~l~~~~l~~l-~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 411 (585)
. ..++|+.|+++.+..... .+...+.+.....+ ....++|+.|++..+.++..... ....+++|+.|+++++...
T Consensus 234 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~ 312 (455)
T 3v47_A 234 DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS-VFSHFTDLEQLTLAQNEIN 312 (455)
T ss_dssp HHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCC
T ss_pred ccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchh-hcccCCCCCEEECCCCccc
Confidence 3 347888888875321100 00001110000000 01246788886665665532211 1235789999999765431
Q ss_pred CCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEee
Q 007912 412 TPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIM 490 (585)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~ 490 (585)
. .....+..+++|+.|++++ .++...... ...+++|++|++++|.+++.....+ .++++|++|+++
T Consensus 313 ~-----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~ 379 (455)
T 3v47_A 313 K-----------IDDNAFWGLTHLLKLNLSQNFLGSIDSRM-FENLDKLEVLDLSYNHIRALGDQSF-LGLPNLKELALD 379 (455)
T ss_dssp E-----------ECTTTTTTCTTCCEEECCSSCCCEECGGG-GTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECC
T ss_pred c-----------cChhHhcCcccCCEEECCCCccCCcChhH-hcCcccCCEEECCCCcccccChhhc-cccccccEEECC
Confidence 1 1111255678999999987 443322222 2346889999999999877655554 678999999999
Q ss_pred CCCCChHHHHHHHHhcccCCEEEeecccCCH
Q 007912 491 DCPFGDKALLANAAKLETMRSLWMSSCSVSF 521 (585)
Q Consensus 491 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~ 521 (585)
+|.++.... ..+..+++|+.|++++|+++.
T Consensus 380 ~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 380 TNQLKSVPD-GIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp SSCCSCCCT-TTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCCH-hHhccCCcccEEEccCCCccc
Confidence 998775332 145688999999999998643
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.75 E-value=3.7e-21 Score=209.73 Aligned_cols=16 Identities=13% Similarity=-0.099 Sum_probs=9.5
Q ss_pred hhCCCCceeeeeecCC
Q 007912 395 KNRPSMIRFRLCIIDP 410 (585)
Q Consensus 395 ~~~~~L~~L~L~~~~~ 410 (585)
..+|+|+.|+++++..
T Consensus 423 ~~l~~L~~L~Ls~N~l 438 (844)
T 3j0a_A 423 LRVPHLQILILNQNRF 438 (844)
T ss_dssp TTCTTCCEEEEESCCC
T ss_pred hcCCccceeeCCCCcc
Confidence 3466666666665543
No 30
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.74 E-value=1.4e-20 Score=198.35 Aligned_cols=86 Identities=13% Similarity=0.131 Sum_probs=40.8
Q ss_pred cCCCCcEEEcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHh------CCCCceEEeCCCCChHHH
Q 007912 155 DCKNLKELDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVR------CPNLRTLRLNRAVPLEKL 228 (585)
Q Consensus 155 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~------~~~L~~L~l~~~~~~~~~ 228 (585)
++++|++|++++|.+.......+ ..+++|++|+++++. .++...+..-... +++|++|+++++.-. .+
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~Ls~n~-~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~i 320 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFL----KALPEMQLINVACNR-GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TF 320 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTT----TTCSSCCEEECTTCT-TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SC
T ss_pred ccCCCCEEEecCCcCCccChHHH----hcCCCCCEEECcCCC-CCccccchHHHHhhhccccCCCCCEEECCCCcCC-cc
Confidence 45666666666665443322222 234466666666551 1333111111111 356666666655422 44
Q ss_pred HH--HHhhCCCceEEcCccc
Q 007912 229 AH--LLRQAPQLVELGTGTY 246 (585)
Q Consensus 229 ~~--~~~~~~~L~~L~l~~~ 246 (585)
+. .+..+++|+.|++++.
T Consensus 321 p~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 321 PVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp CCHHHHTTCTTCCEEECCSC
T ss_pred CchhhhccCCCCCEEeCcCC
Confidence 44 4555666666665543
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.73 E-value=1.3e-20 Score=205.48 Aligned_cols=399 Identities=14% Similarity=0.044 Sum_probs=210.8
Q ss_pred CCCceEEEecCCCCCCCCCCCcCCCCCcchhHHHHHHccCCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCC
Q 007912 66 FPEVRSVELKGKPHFADFNLVPEGWGGYVYPWIRAMAGGYPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFS 145 (585)
Q Consensus 66 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 145 (585)
.++++.|+++++. +... .+.. +..+++|++|+++++......-......+++|+.|+|+++. +.
T Consensus 23 p~~l~~LdLs~N~-i~~i--~~~~------------~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~ 86 (844)
T 3j0a_A 23 LNTTERLLLSFNY-IRTV--TASS------------FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IY 86 (844)
T ss_dssp CTTCCEEEEESCC-CCEE--CSSS------------CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CC
T ss_pred CCCcCEEECCCCc-CCcc--ChhH------------CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-Cc
Confidence 4679999998754 2111 1111 35678999999988732211101112367889999998763 33
Q ss_pred HHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCCh
Q 007912 146 THGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPL 225 (585)
Q Consensus 146 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 225 (585)
... ...+..+++|++|++++|.+.+..... .....+++|++|+++++ .+........+..+++|++|+++++.-.
T Consensus 87 ~~~-p~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~~~L~~L~~L~Ls~N--~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 87 FLH-PDAFQGLFHLFELRLYFCGLSDAVLKD--GYFRNLKALTRLDLSKN--QIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp EEC-TTSSCSCSSCCCEECTTCCCSSCCSTT--CCCSSCSSCCEEEEESC--CCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred ccC-HhHccCCcccCEeeCcCCCCCcccccC--ccccccCCCCEEECCCC--cccccccchhHhhCCCCCEEECCCCcCC
Confidence 221 222347889999999998876532221 12234669999999877 3332222223467889999999876421
Q ss_pred HHHHHHHhhC--CCceEEcCccccCCCCc-hhhhhhhhhhhcccccccccCccc-cCcCchhhHh---------------
Q 007912 226 EKLAHLLRQA--PQLVELGTGTYSADLRP-DIFSNLAGAFSGCKELKSLSGFWD-VVPAYLPAVY--------------- 286 (585)
Q Consensus 226 ~~~~~~~~~~--~~L~~L~l~~~~~~~~~-~~~~~l~~~~~~~~~L~~L~~~~~-~~~~~l~~~~--------------- 286 (585)
...+..+..+ ++|+.|.++........ .........+.. .+|+.|.-..+ ........+.
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN-MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTT-CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred eeCHHHcccccCCccceEECCCCccccccccchhhcCCcccc-CceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence 1111111111 67888887665443211 011111111111 13555531111 1100000000
Q ss_pred --------------------h--cCCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc-cchhHHHHHHhcCCCCce
Q 007912 287 --------------------S--VCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY-IEDSGLEALAATCKDLRE 343 (585)
Q Consensus 287 --------------------~--~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~ 343 (585)
. ..++|+.|++++|.+.... ...+..+++|+.|++.++ +....... ...+++|+.
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~ 318 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN-SRVFETLKDLKVLNLAYNKINKIADEA-FYGLDNLQV 318 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC-SCCSSSCCCCCEEEEESCCCCEECTTT-TTTCSSCCE
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCcccccC-hhhhhcCCCCCEEECCCCcCCCCChHH-hcCCCCCCE
Confidence 0 1256777777776643321 122345677777777764 22111111 135677777
Q ss_pred EEeccCCCCCCCCCCCcchHHHHHHHhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchh
Q 007912 344 LRVFPSEPFGDEPNVSLTEQGLVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDV 423 (585)
Q Consensus 344 L~l~~~~~~~~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 423 (585)
|++++. .++.... .....+++|+.|++..+.++...... ...+++|+.|+++++.. +.
T Consensus 319 L~Ls~N---------~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~-~~~l~~L~~L~Ls~N~l------~~----- 376 (844)
T 3j0a_A 319 LNLSYN---------LLGELYS-SNFYGLPKVAYIDLQKNHIAIIQDQT-FKFLEKLQTLDLRDNAL------TT----- 376 (844)
T ss_dssp EEEESC---------CCSCCCS-CSCSSCTTCCEEECCSCCCCCCCSSC-SCSCCCCCEEEEETCCS------CC-----
T ss_pred EECCCC---------CCCccCH-HHhcCCCCCCEEECCCCCCCccChhh-hcCCCCCCEEECCCCCC------Cc-----
Confidence 777732 2221100 01123667777755544443221111 12467777777765432 10
Q ss_pred hHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHH
Q 007912 424 GFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLAN 502 (585)
Q Consensus 424 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 502 (585)
+..+++|+.|++++ .++ .+.....+++.|++++|.+++.........+++|++|++++|.++.......
T Consensus 377 -----i~~~~~L~~L~l~~N~l~-----~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 446 (844)
T 3j0a_A 377 -----IHFIPSIPDIFLSGNKLV-----TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446 (844)
T ss_dssp -----CSSCCSCSEEEEESCCCC-----CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS
T ss_pred -----ccCCCCcchhccCCCCcc-----cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccc
Confidence 11256777777766 222 1112245678888888887665544445678889999999887764321112
Q ss_pred HHhcccCCEEEeecccCC
Q 007912 503 AAKLETMRSLWMSSCSVS 520 (585)
Q Consensus 503 ~~~l~~L~~L~l~~~~i~ 520 (585)
...+++|+.|++++|.++
T Consensus 447 ~~~~~~L~~L~Ls~N~l~ 464 (844)
T 3j0a_A 447 PSENPSLEQLFLGENMLQ 464 (844)
T ss_dssp SCSCTTCCBCEEESCCCS
T ss_pred cccCCccccccCCCCccc
Confidence 345788899999988764
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.73 E-value=7.9e-19 Score=174.22 Aligned_cols=322 Identities=15% Similarity=0.100 Sum_probs=186.8
Q ss_pred CCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCC
Q 007912 105 YPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTC 184 (585)
Q Consensus 105 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~ 184 (585)
+++++.|+++++.++...-. +...+++|++|+++++. ++..... .+..+++|++|++++|.+.......+. .+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~-~~~~l~~L~~L~L~~n~-i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l 116 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAA-LLDSFRQVELLNLNDLQ-IEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQ----NV 116 (390)
T ss_dssp GCCCSEEEEESCEESEECTH-HHHHCCCCSEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTT----TC
T ss_pred cCCceEEEecCCchhhCChh-HhcccccCcEEECCCCc-ccccChh-hccCCCCcCEEECCCCCCCcCCHHHhc----CC
Confidence 47888898888765543222 22367888888888763 3322111 224778888999888887655433333 35
Q ss_pred CcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHHHHHhhCCCceEEcCccccCCCCchhhhhhhhhhhc
Q 007912 185 TSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVELGTGTYSADLRPDIFSNLAGAFSG 264 (585)
Q Consensus 185 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~ 264 (585)
++|++|+++++. +... ...+...+++|++|+++++.-....+..+
T Consensus 117 ~~L~~L~L~~n~--l~~l-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-------------------------------- 161 (390)
T 3o6n_A 117 PLLTVLVLERND--LSSL-PRGIFHNTPKLTTLSMSNNNLERIEDDTF-------------------------------- 161 (390)
T ss_dssp TTCCEEECCSSC--CCCC-CTTTTTTCTTCCEEECCSSCCCBCCTTTT--------------------------------
T ss_pred CCCCEEECCCCc--cCcC-CHHHhcCCCCCcEEECCCCccCccChhhc--------------------------------
Confidence 688888888662 2211 11123456777777777653110001111
Q ss_pred ccccccccCccccCcCchhhHhhcCCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc-cchhHHHHHHhcCCCCce
Q 007912 265 CKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY-IEDSGLEALAATCKDLRE 343 (585)
Q Consensus 265 ~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~ 343 (585)
..+++|+.|++++|.+.... ...+++|+.|++.++ +... ...++|++
T Consensus 162 ----------------------~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n~l~~~------~~~~~L~~ 209 (390)
T 3o6n_A 162 ----------------------QATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLSTL------AIPIAVEE 209 (390)
T ss_dssp ----------------------SSCTTCCEEECCSSCCSBCC----GGGCTTCSEEECCSSCCSEE------ECCSSCSE
T ss_pred ----------------------cCCCCCCEEECCCCcCCccc----cccccccceeeccccccccc------CCCCcceE
Confidence 12455555555555533322 234455555555543 1110 12345666
Q ss_pred EEeccCCCCCCCCCCCcchHHHHHHHhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchh
Q 007912 344 LRVFPSEPFGDEPNVSLTEQGLVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDV 423 (585)
Q Consensus 344 L~l~~~~~~~~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 423 (585)
|++++. .++... ....++|+.|.+..+.+++. .....+++|++|+++++.. + .
T Consensus 210 L~l~~n---------~l~~~~----~~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l------~-----~ 262 (390)
T 3o6n_A 210 LDASHN---------SINVVR----GPVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNEL------E-----K 262 (390)
T ss_dssp EECCSS---------CCCEEE----CCCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCC------C-----E
T ss_pred EECCCC---------eeeecc----ccccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcC------C-----C
Confidence 666531 121110 01135566665444455432 1223578888888876533 1 1
Q ss_pred hHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHH
Q 007912 424 GFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLAN 502 (585)
Q Consensus 424 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 502 (585)
.....+..+++|++|++++ .++.. ......+++|+.|++++|.++..... ...+++|++|++++|.++...
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~l~~L~~L~L~~N~i~~~~---- 334 (390)
T 3o6n_A 263 IMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVERN--QPQFDRLENLYLDHNSIVTLK---- 334 (390)
T ss_dssp EESGGGTTCSSCCEEECCSSCCCEE--ECSSSCCTTCCEEECCSSCCCCCGGG--HHHHTTCSEEECCSSCCCCCC----
T ss_pred cChhHccccccCCEEECCCCcCccc--CcccCCCCCCCEEECCCCcceecCcc--ccccCcCCEEECCCCccceeC----
Confidence 1112256778999999987 33321 11113468899999999997643221 145699999999999887653
Q ss_pred HHhcccCCEEEeecccCCHHHHHHHHhhCCCcE
Q 007912 503 AAKLETMRSLWMSSCSVSFEACKLLGQKMPRLN 535 (585)
Q Consensus 503 ~~~l~~L~~L~l~~~~i~~~~~~~l~~~~~~l~ 535 (585)
...+++|+.|++++|+++......+....+...
T Consensus 335 ~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~ 367 (390)
T 3o6n_A 335 LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPA 367 (390)
T ss_dssp CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTT
T ss_pred chhhccCCEEEcCCCCccchhHHHHHHHHHhhc
Confidence 457899999999999998888887766666543
No 33
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=1.1e-19 Score=194.77 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=9.9
Q ss_pred ccCCCCcEEEe-ccc
Q 007912 103 GGYPWLEELKL-KRM 116 (585)
Q Consensus 103 ~~~~~L~~L~l-~~~ 116 (585)
..+++|+.|+| +++
T Consensus 344 ~~L~~L~~LdLss~N 358 (876)
T 4ecn_A 344 GQLTELKVLSFGTHS 358 (876)
T ss_dssp GGCTTCCEEESCCTT
T ss_pred hccccceEeeecccc
Confidence 46778888888 544
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.71 E-value=5.8e-19 Score=179.33 Aligned_cols=354 Identities=11% Similarity=0.029 Sum_probs=214.1
Q ss_pred CCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHh
Q 007912 131 KNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVR 210 (585)
Q Consensus 131 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~ 210 (585)
++|++|+++++ .++... ...+..+++|++|++++|.+.... .......+++|++|+++++. +.... ...+..
T Consensus 30 ~~l~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~L~~n~~~~~i---~~~~~~~l~~L~~L~Ls~n~--l~~~~-~~~~~~ 101 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELN-ETSFSRLQDLQFLKVEQQTPGLVI---RNNTFRGLSSLIILKLDYNQ--FLQLE-TGAFNG 101 (455)
T ss_dssp TTCCEEECCSS-CCCEEC-TTTTSSCTTCCEEECCCCSTTCEE---CTTTTTTCTTCCEEECTTCT--TCEEC-TTTTTT
T ss_pred CccCEEEecCC-ccCcCC-hhHhccCccccEEECcCCcccceE---CcccccccccCCEEeCCCCc--cCccC-hhhccC
Confidence 67999999876 333221 122347899999999998764221 01222346799999998773 32211 112355
Q ss_pred CCCCceEEeCCCCChHHHHHH--HhhCCCceEEcCccccCCCCchhhhhhhhhhhcccccccccCccccCcCchhhHhhc
Q 007912 211 CPNLRTLRLNRAVPLEKLAHL--LRQAPQLVELGTGTYSADLRPDIFSNLAGAFSGCKELKSLSGFWDVVPAYLPAVYSV 288 (585)
Q Consensus 211 ~~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~ 288 (585)
+++|++|+++++.-....+.. +..+++|++|++++..... .....+...
T Consensus 102 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------------------~~~~~~~~~ 152 (455)
T 3v47_A 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK-----------------------------IQPASFFLN 152 (455)
T ss_dssp CTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS-----------------------------CCCCGGGGG
T ss_pred cccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc-----------------------------cCcccccCC
Confidence 789999999888643333332 6667777777775543221 111122445
Q ss_pred CCCCCEEEeecccCCchhHHHHHh-cCCCCcEEecccc-cch---hH--HHHH--HhcCCCCceEEeccCCCCCCCCCCC
Q 007912 289 CSGLTTLNLSYATIQSPDLIKLVS-QCPKLQCLWVLDY-IED---SG--LEAL--AATCKDLRELRVFPSEPFGDEPNVS 359 (585)
Q Consensus 289 ~~~L~~L~L~~~~~~~~~l~~l~~-~~~~L~~L~l~~~-~~~---~~--~~~l--~~~~~~L~~L~l~~~~~~~~~~~~~ 359 (585)
+++|+.|++++|.+.......+.. ..++|+.|++.++ +.+ .. .... ...+++|++|++++ +.
T Consensus 153 l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~---------n~ 223 (455)
T 3v47_A 153 MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG---------NG 223 (455)
T ss_dssp CTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTT---------SC
T ss_pred CCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCC---------Cc
Confidence 899999999998854332222111 2267888888874 221 10 0100 11457899999984 35
Q ss_pred cchHHHHHHHh--CCCCCceehhcccCCcHHH----------HHHH-HhhCCCCceeeeeecCCCCCCCCCCCcchhhHH
Q 007912 360 LTEQGLVLVSE--GCPKLESVLYFCRRMSNDA----------LVTI-AKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFG 426 (585)
Q Consensus 360 l~~~~l~~l~~--~~~~L~~L~~~~~~~~~~~----------~~~l-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 426 (585)
++......+.. ..++|+.|........... ...+ ...+++|+.|+++++.. + ....
T Consensus 224 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l------~-----~~~~ 292 (455)
T 3v47_A 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI------F-----ALLK 292 (455)
T ss_dssp CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCC------C-----EECT
T ss_pred ccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccc------c-----ccch
Confidence 55544433333 2477887753322111000 0000 01236899999886543 1 1112
Q ss_pred HHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHh
Q 007912 427 AIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAK 505 (585)
Q Consensus 427 ~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 505 (585)
..+..+++|++|++++ .+++.....+ ..+++|+.|++++|.+++.....+ .++++|++|++++|.++.... ..+..
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~-~~~~~ 369 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKIDDNAF-WGLTHLLKLNLSQNFLGSIDSRMF-ENLDKLEVLDLSYNHIRALGD-QSFLG 369 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCEECGGGG-TTCTTCCEEECCSSCCCEECT-TTTTT
T ss_pred hhcccCCCCCEEECCCCcccccChhHh-cCcccCCEEECCCCccCCcChhHh-cCcccCCEEECCCCcccccCh-hhccc
Confidence 2356789999999987 4443322222 346889999999999876655444 678999999999998865432 24567
Q ss_pred cccCCEEEeecccCCHHHHHHHHhhCCCcEEEEecCCCCC
Q 007912 506 LETMRSLWMSSCSVSFEACKLLGQKMPRLNVEVIDESGPP 545 (585)
Q Consensus 506 l~~L~~L~l~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~ 545 (585)
+++|++|++++|+++......+ ..++.++...+.+++..
T Consensus 370 l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 370 LPNLKELALDTNQLKSVPDGIF-DRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSCBC
T ss_pred cccccEEECCCCccccCCHhHh-ccCCcccEEEccCCCcc
Confidence 8999999999998865333223 46788888888877554
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.71 E-value=1.9e-19 Score=192.51 Aligned_cols=218 Identities=11% Similarity=-0.037 Sum_probs=127.8
Q ss_pred hcCCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc-cchhHHHHHHhcCCCCceEEeccCCCCCCCCCCCcchH-H
Q 007912 287 SVCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY-IEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSLTEQ-G 364 (585)
Q Consensus 287 ~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~ 364 (585)
..+++|+.|++++|.+........+..+++|+.|+++++ +.......+ ..+++|+.|++.++ .+... .
T Consensus 402 ~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~~L~~L~l~~n---------~l~~~~~ 471 (680)
T 1ziw_A 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF-ALVPSLQRLMLRRV---------ALKNVDS 471 (680)
T ss_dssp TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTT-TTCTTCCEEECTTS---------CCBCTTC
T ss_pred hCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhh-hcCcccccchhccc---------ccccccc
Confidence 346777777777776433211122456677777777764 221111111 25777888887742 11110 0
Q ss_pred HHHHHhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-C
Q 007912 365 LVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-L 443 (585)
Q Consensus 365 l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~ 443 (585)
.......+++|+.|++..+.++...... ...+++|+.|+++++....-..-. . ..+....+..+++|+.|++++ .
T Consensus 472 ~p~~~~~l~~L~~L~Ls~N~l~~i~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~-~--~~~~~~~~~~l~~L~~L~L~~N~ 547 (680)
T 1ziw_A 472 SPSPFQPLRNLTILDLSNNNIANINDDM-LEGLEKLEILDLQHNNLARLWKHA-N--PGGPIYFLKGLSHLHILNLESNG 547 (680)
T ss_dssp SSCTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCGGGGSTT-S--TTSCCCTTTTCTTCCEEECCSSC
T ss_pred CCcccccCCCCCEEECCCCCCCcCChhh-hccccccCEEeCCCCCccccchhh-c--cCCcchhhcCCCCCCEEECCCCC
Confidence 0111234788888876666665322111 235788999998865431100000 0 000001256789999999987 3
Q ss_pred CCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCC
Q 007912 444 LTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVS 520 (585)
Q Consensus 444 ~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 520 (585)
++... ......+++|+.|++++|.++......+ .++++|+.|++++|.++......+...+++|+.|++++|++.
T Consensus 548 l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 548 FDEIP-VEVFKDLFELKIIDLGLNNLNTLPASVF-NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp CCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred CCCCC-HHHcccccCcceeECCCCCCCcCCHhHh-CCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence 33211 1122457889999999999875444433 678999999999998776543323337899999999999764
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=6.6e-18 Score=176.91 Aligned_cols=320 Identities=15% Similarity=0.104 Sum_probs=178.0
Q ss_pred CCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCC
Q 007912 105 YPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTC 184 (585)
Q Consensus 105 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~ 184 (585)
+++++.++++++.+....-. +...+++|+.|+++++. ++..... .+..+++|++|++++|.+.......+. .+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~-~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l 122 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAA-LLDSFRQVELLNLNDLQ-IEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQ----NV 122 (597)
T ss_dssp GCCCSEEEESSCEESEECTH-HHHHCCCCSEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTT----TC
T ss_pred CCCceEEEeeCCCCCCcCHH-HHccCCCCcEEECCCCC-CCCCChH-HhcCCCCCCEEECCCCcCCCCCHHHHc----CC
Confidence 46788888888765543222 23367888888888763 3322111 224778888888888887665433333 45
Q ss_pred CcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHHHHHhhCCCceEEcCccccCCCCchhhhhhhhhhhc
Q 007912 185 TSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVELGTGTYSADLRPDIFSNLAGAFSG 264 (585)
Q Consensus 185 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~ 264 (585)
++|++|+++++. +... ...++..+++|++|+++++.-....+..+..
T Consensus 123 ~~L~~L~L~~n~--l~~l-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------ 169 (597)
T 3oja_B 123 PLLTVLVLERND--LSSL-PRGIFHNTPKLTTLSMSNNNLERIEDDTFQA------------------------------ 169 (597)
T ss_dssp TTCCEEECCSSC--CCCC-CTTTTTTCTTCCEEECCSSCCCBCCTTTTTT------------------------------
T ss_pred CCCCEEEeeCCC--CCCC-CHHHhccCCCCCEEEeeCCcCCCCChhhhhc------------------------------
Confidence 688888888663 2211 1112345677777777766411111111222
Q ss_pred ccccccccCccccCcCchhhHhhcCCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc-cchhHHHHHHhcCCCCce
Q 007912 265 CKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY-IEDSGLEALAATCKDLRE 343 (585)
Q Consensus 265 ~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~ 343 (585)
+++|+.|++++|.+.... ...+++|+.|++.++ +... ...++|+.
T Consensus 170 ------------------------l~~L~~L~L~~N~l~~~~----~~~l~~L~~L~l~~n~l~~l------~~~~~L~~ 215 (597)
T 3oja_B 170 ------------------------TTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLSTL------AIPIAVEE 215 (597)
T ss_dssp ------------------------CTTCCEEECTTSCCSBCC----GGGCTTCSEEECCSSCCSEE------ECCTTCSE
T ss_pred ------------------------CCcCcEEECcCCCCCCcC----hhhhhhhhhhhcccCccccc------cCCchhhe
Confidence 445555555554433221 223445555555443 1110 12344555
Q ss_pred EEeccCCCCCCCCCCCcchHHHHHHHhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchh
Q 007912 344 LRVFPSEPFGDEPNVSLTEQGLVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDV 423 (585)
Q Consensus 344 L~l~~~~~~~~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 423 (585)
|+++++ .++... ....++|+.|.+..+.+++. .....+++|+.|+++++.. + .
T Consensus 216 L~ls~n---------~l~~~~----~~~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l------~-----~ 268 (597)
T 3oja_B 216 LDASHN---------SINVVR----GPVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNEL------E-----K 268 (597)
T ss_dssp EECCSS---------CCCEEE----CSCCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCC------C-----E
T ss_pred eeccCC---------cccccc----cccCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCcc------C-----C
Confidence 555521 111110 01124555554444444432 1223578888888876533 1 0
Q ss_pred hHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHH
Q 007912 424 GFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLAN 502 (585)
Q Consensus 424 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 502 (585)
.....+..+++|+.|++++ .++.. ......+++|+.|+|++|.++..... ...+++|++|++++|.++...
T Consensus 269 ~~~~~~~~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~Ls~N~l~~i~~~--~~~l~~L~~L~L~~N~l~~~~---- 340 (597)
T 3oja_B 269 IMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVERN--QPQFDRLENLYLDHNSIVTLK---- 340 (597)
T ss_dssp EESGGGTTCSSCCEEECTTSCCCEE--ECSSSCCTTCCEEECCSSCCCCCGGG--HHHHTTCSEEECCSSCCCCCC----
T ss_pred CCHHHhcCccCCCEEECCCCCCCCC--CcccccCCCCcEEECCCCCCCccCcc--cccCCCCCEEECCCCCCCCcC----
Confidence 1112256678888888877 33321 11113367899999999987643211 245689999999999876543
Q ss_pred HHhcccCCEEEeecccCCHHHHHHHHhhCCC
Q 007912 503 AAKLETMRSLWMSSCSVSFEACKLLGQKMPR 533 (585)
Q Consensus 503 ~~~l~~L~~L~l~~~~i~~~~~~~l~~~~~~ 533 (585)
...+++|+.|++++|+++......+....+.
T Consensus 341 ~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~ 371 (597)
T 3oja_B 341 LSTHHTLKNLTLSHNDWDCNSLRALFRNVAR 371 (597)
T ss_dssp CCTTCCCSEEECCSSCEEHHHHHHHTTTCCT
T ss_pred hhhcCCCCEEEeeCCCCCChhHHHHHHHHhh
Confidence 4577899999999999887776666554443
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.69 E-value=1.3e-18 Score=181.43 Aligned_cols=134 Identities=15% Similarity=0.225 Sum_probs=72.5
Q ss_pred CCCCCceehhcccCCcHH-HHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHH
Q 007912 371 GCPKLESVLYFCRRMSND-ALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRV 448 (585)
Q Consensus 371 ~~~~L~~L~~~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~ 448 (585)
.+++|+.|.+..+.++.. .+......+++|+.|+++++.... .+. . ..+..+++|+.|++++ .+++..
T Consensus 375 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~----~----~~~~~l~~L~~L~l~~n~l~~~~ 444 (562)
T 3a79_B 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS--HAY----D----RTCAWAESILVLNLSSNMLTGSV 444 (562)
T ss_dssp SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS--CCS----S----CCCCCCTTCCEEECCSSCCCGGG
T ss_pred ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC--ccC----h----hhhcCcccCCEEECCCCCCCcch
Confidence 356666665555555531 222223346677777776543211 010 0 0134456777777766 444322
Q ss_pred HHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCC
Q 007912 449 FEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVS 520 (585)
Q Consensus 449 ~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 520 (585)
+..+ .++|+.|++++|.++..... + ..+++|++|++++|.++..... .+..+++|+.|++++|+++
T Consensus 445 ~~~l---~~~L~~L~L~~N~l~~ip~~-~-~~l~~L~~L~L~~N~l~~l~~~-~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 445 FRCL---PPKVKVLDLHNNRIMSIPKD-V-THLQALQELNVASNQLKSVPDG-VFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp GSSC---CTTCSEEECCSSCCCCCCTT-T-TSSCCCSEEECCSSCCCCCCTT-STTTCTTCCCEECCSCCBC
T ss_pred hhhh---cCcCCEEECCCCcCcccChh-h-cCCCCCCEEECCCCCCCCCCHH-HHhcCCCCCEEEecCCCcC
Confidence 2111 15677778777776632211 1 3567788888888766532211 2456777888888887754
No 38
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.69 E-value=1.6e-19 Score=190.14 Aligned_cols=350 Identities=11% Similarity=0.081 Sum_probs=197.3
Q ss_pred HhcCCCCcEEEcccCCCCCc--cccc-----------ccccCC--CCCcccEEEeccccCcCCHHHHHHHHHhCCCCceE
Q 007912 153 AADCKNLKELDLWESDVEDP--SGNW-----------LSKFPD--TCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTL 217 (585)
Q Consensus 153 ~~~~~~L~~L~l~~~~~~~~--~~~~-----------l~~~~~--~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L 217 (585)
+.++++|++|++++|.+... ...| ++.... .+++|++|+++++. +... +...+..+++|++|
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~--l~~~-~p~~l~~l~~L~~L 278 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP--NLTK-LPTFLKALPEMQLI 278 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT--TCSS-CCTTTTTCSSCCEE
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc--CCcc-ChHHHhcCCCCCEE
Confidence 45889999999999987762 1111 333333 57799999999773 2211 11224568999999
Q ss_pred EeCCCCChH--HHHHHHhhC------CCceEEcCccccCCCCchhhhhhhh--hhhcccccccccCccccCcCchhhHhh
Q 007912 218 RLNRAVPLE--KLAHLLRQA------PQLVELGTGTYSADLRPDIFSNLAG--AFSGCKELKSLSGFWDVVPAYLPAVYS 287 (585)
Q Consensus 218 ~l~~~~~~~--~~~~~~~~~------~~L~~L~l~~~~~~~~~~~~~~l~~--~~~~~~~L~~L~~~~~~~~~~l~~~~~ 287 (585)
+++++..+. .++..+..+ ++|++|+++++... .++. .+..+++|+.|.-..+.-...++ ...
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-------~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~ 350 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-------TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG 350 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-------SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-------ccCchhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence 999986333 577777665 99999999876554 2333 55667778877422221111222 234
Q ss_pred cCCCCCEEEeecccCCchhHHHHHhcCCC-CcEEecccc-cchhHHHHHHh--cCCCCceEEeccCCCCCCCCCCCcchH
Q 007912 288 VCSGLTTLNLSYATIQSPDLIKLVSQCPK-LQCLWVLDY-IEDSGLEALAA--TCKDLRELRVFPSEPFGDEPNVSLTEQ 363 (585)
Q Consensus 288 ~~~~L~~L~L~~~~~~~~~l~~l~~~~~~-L~~L~l~~~-~~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~ 363 (585)
.+++|+.|++++|.+. .+..-+..+++ |+.|+++++ +. .+..... .+++|+.|+++.+ .++..
T Consensus 351 ~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N---------~l~~~ 417 (636)
T 4eco_A 351 SEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLK--YIPNIFDAKSVSVMSAIDFSYN---------EIGSV 417 (636)
T ss_dssp EEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCS--SCCSCCCTTCSSCEEEEECCSS---------CTTTT
T ss_pred CCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCc--ccchhhhhcccCccCEEECcCC---------cCCCc
Confidence 5678888888888744 22222456677 888888875 32 1111111 2346888888742 22221
Q ss_pred HHHHHH------hCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHH---hhhCCC
Q 007912 364 GLVLVS------EGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAI---VQHCKD 434 (585)
Q Consensus 364 ~l~~l~------~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 434 (585)
.-..+. -.+++|+.|.+..+.++... ..+...+++|+.|+++++... .+. ...+... +..+++
T Consensus 418 ~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp-~~~~~~l~~L~~L~Ls~N~l~---~i~----~~~~~~~~~~~~~l~~ 489 (636)
T 4eco_A 418 DGKNFDPLDPTPFKGINVSSINLSNNQISKFP-KELFSTGSPLSSINLMGNMLT---EIP----KNSLKDENENFKNTYL 489 (636)
T ss_dssp TTCSSCTTCSSCCCCCCEEEEECCSSCCCSCC-THHHHTTCCCSEEECCSSCCS---BCC----SSSSEETTEECTTGGG
T ss_pred chhhhcccccccccCCCCCEEECcCCccCcCC-HHHHccCCCCCEEECCCCCCC---CcC----HHHhccccccccccCC
Confidence 100011 02457777766656665221 123345788888888765432 111 1100000 112337
Q ss_pred CcEEecCC-CCCHHHHHHHH-hhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeC------CCCChHHHHHHHHhc
Q 007912 435 LRRLSLSG-LLTDRVFEYIG-TYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMD------CPFGDKALLANAAKL 506 (585)
Q Consensus 435 L~~L~l~~-~~~~~~~~~l~-~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~------~~~~~~~~~~~~~~l 506 (585)
|+.|++++ .++. ....+. ..+++|+.|++++|.++.. ... ...+++|++|++++ |.+.... ...+..+
T Consensus 490 L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~i-p~~-~~~l~~L~~L~Ls~N~~ls~N~l~~~~-p~~l~~l 565 (636)
T 4eco_A 490 LTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSKF-PTQ-PLNSSTLKGFGIRNQRDAQGNRTLREW-PEGITLC 565 (636)
T ss_dssp CCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSSCCSSC-CCG-GGGCSSCCEEECCSCBCTTCCBCCCCC-CTTGGGC
T ss_pred ccEEECcCCcCCc-cChhhhhccCCCcCEEECCCCCCCCc-Chh-hhcCCCCCEEECCCCcccccCcccccC-hHHHhcC
Confidence 88888876 3431 111121 2567788888888887651 122 25678888888854 3332221 1234567
Q ss_pred ccCCEEEeecccCCHHHHHHHHhhCCCcEEEEecCC
Q 007912 507 ETMRSLWMSSCSVSFEACKLLGQKMPRLNVEVIDES 542 (585)
Q Consensus 507 ~~L~~L~l~~~~i~~~~~~~l~~~~~~l~~~~~~~~ 542 (585)
++|+.|++++|.++..... -.+.++...+..+
T Consensus 566 ~~L~~L~Ls~N~l~~ip~~----~~~~L~~L~Ls~N 597 (636)
T 4eco_A 566 PSLTQLQIGSNDIRKVNEK----ITPNISVLDIKDN 597 (636)
T ss_dssp SSCCEEECCSSCCCBCCSC----CCTTCCEEECCSC
T ss_pred CCCCEEECCCCcCCccCHh----HhCcCCEEECcCC
Confidence 7888888888876321110 1256666666655
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.68 E-value=2.2e-17 Score=166.24 Aligned_cols=146 Identities=15% Similarity=0.086 Sum_probs=97.0
Q ss_pred HhhCCCceEEEecCCCCCCCCCCCcCCCCCcchhHHHHHHccCCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccC
Q 007912 63 IRRFPEVRSVELKGKPHFADFNLVPEGWGGYVYPWIRAMAGGYPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCE 142 (585)
Q Consensus 63 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 142 (585)
+..+++++.|+++++. +.+. + -...+++|++|+++++.++... ...+++|++|+++++.
T Consensus 38 ~~~l~~L~~L~Ls~n~-l~~~---~-------------~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~ 96 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSS-ITDM---T-------------GIEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNK 96 (457)
T ss_dssp HHHHTTCCEEECCSSC-CCCC---T-------------TGGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSC
T ss_pred hhHcCCCCEEEccCCC-cccC---h-------------hhcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCC
Confidence 3457888999988753 2111 1 1256789999999998777632 2356889999998763
Q ss_pred CCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCC
Q 007912 143 GFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRA 222 (585)
Q Consensus 143 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 222 (585)
++... +..+++|++|++++|.+.... ...+++|++|+++++. +.... ...+++|+.|+++++
T Consensus 97 -l~~~~----~~~l~~L~~L~L~~N~l~~l~-------~~~l~~L~~L~l~~N~--l~~l~----l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 97 -LTNLD----VTPLTKLTYLNCDTNKLTKLD-------VSQNPLLTYLNCARNT--LTEID----VSHNTQLTELDCHLN 158 (457)
T ss_dssp -CSCCC----CTTCTTCCEEECCSSCCSCCC-------CTTCTTCCEEECTTSC--CSCCC----CTTCTTCCEEECTTC
T ss_pred -Cceee----cCCCCcCCEEECCCCcCCeec-------CCCCCcCCEEECCCCc--cceec----cccCCcCCEEECCCC
Confidence 33321 347889999999998876532 2346689999998773 33211 356788999998887
Q ss_pred CChHHHHHHHhhCCCceEEcCccccCC
Q 007912 223 VPLEKLAHLLRQAPQLVELGTGTYSAD 249 (585)
Q Consensus 223 ~~~~~~~~~~~~~~~L~~L~l~~~~~~ 249 (585)
..+..+ .+..+++|+.|++++....
T Consensus 159 ~~~~~~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 159 KKITKL--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp SCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred Cccccc--ccccCCcCCEEECCCCccc
Confidence 544333 2456778888887665443
No 40
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=4.1e-19 Score=190.25 Aligned_cols=329 Identities=11% Similarity=0.071 Sum_probs=181.1
Q ss_pred HhcCCCCcEEEcccCCCCCccc--c-----------cccccCC--CCCcccEEEeccccCcCCHHHHHHHHHhCCCCceE
Q 007912 153 AADCKNLKELDLWESDVEDPSG--N-----------WLSKFPD--TCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTL 217 (585)
Q Consensus 153 ~~~~~~L~~L~l~~~~~~~~~~--~-----------~l~~~~~--~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L 217 (585)
+.++++|++|++++|.+..... . .++.... .+++|++|+++++. +... +...+..+++|+.|
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~--l~~~-iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP--NMTQ-LPDFLYDLPELQSL 520 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT--TCCS-CCGGGGGCSSCCEE
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC--CCcc-ChHHHhCCCCCCEE
Confidence 3477899999999998775200 0 1222222 56799999998763 1111 11234568999999
Q ss_pred EeCCCCChH--HHHHHHhhC-------CCceEEcCccccCCCCchhhhhhhh--hhhcccccccccCcc-ccCcCchhhH
Q 007912 218 RLNRAVPLE--KLAHLLRQA-------PQLVELGTGTYSADLRPDIFSNLAG--AFSGCKELKSLSGFW-DVVPAYLPAV 285 (585)
Q Consensus 218 ~l~~~~~~~--~~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~l~~--~~~~~~~L~~L~~~~-~~~~~~l~~~ 285 (585)
+++++..+. .++..+..+ ++|+.|+++++... .++. .+..+++|+.|.-.. .+. .++ .
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-------~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp-~ 590 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-------EFPASASLQKMVKLGLLDCVHNKVR--HLE-A 590 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-------BCCCHHHHTTCTTCCEEECTTSCCC--BCC-C
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-------ccCChhhhhcCCCCCEEECCCCCcc--cch-h
Confidence 999886233 466555544 48999998776544 2333 556677777774222 122 333 3
Q ss_pred hhcCCCCCEEEeecccCCchhHHHHHhcCCC-CcEEecccc-cchhHHHHHHhc--CCCCceEEeccCCCCCCCCCCCcc
Q 007912 286 YSVCSGLTTLNLSYATIQSPDLIKLVSQCPK-LQCLWVLDY-IEDSGLEALAAT--CKDLRELRVFPSEPFGDEPNVSLT 361 (585)
Q Consensus 286 ~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~-L~~L~l~~~-~~~~~~~~l~~~--~~~L~~L~l~~~~~~~~~~~~~l~ 361 (585)
...+++|+.|++++|.+. .+...+..+++ |+.|+++++ +. .+...... .++|+.|+++.+ .++
T Consensus 591 ~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N---------~l~ 657 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYN---------KIG 657 (876)
T ss_dssp CCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSS---------CTT
T ss_pred hcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCCCC--cCchhhhccccCCCCEEECcCC---------cCC
Confidence 345778888888888754 22222455677 888888875 32 11111111 234788888742 222
Q ss_pred hH--HHH-HH-HhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHH---HHhhhCCC
Q 007912 362 EQ--GLV-LV-SEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFG---AIVQHCKD 434 (585)
Q Consensus 362 ~~--~l~-~l-~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 434 (585)
.. .+. .+ ...+++|+.|.+..+.++... ..+...+++|+.|+|+++... .+. ...+. ..+.++++
T Consensus 658 g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp-~~~~~~l~~L~~L~Ls~N~L~---~ip----~~~~~~~~~~l~nl~~ 729 (876)
T 4ecn_A 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFP-TELFATGSPISTIILSNNLMT---SIP----ENSLKPKDGNYKNTYL 729 (876)
T ss_dssp TTSSSCSSCTTTCCCCCEEEEECCSSCCCSCC-HHHHHTTCCCSEEECCSCCCS---CCC----TTSSSCTTSCCTTGGG
T ss_pred CccccchhhhccccCCCcCEEEccCCcCCccC-HHHHccCCCCCEEECCCCcCC---ccC----hHHhccccccccccCC
Confidence 10 000 00 001346777766666665221 223335778888888765432 111 10000 00223447
Q ss_pred CcEEecCC-CCCHHHHHHHH-hhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeC------CCCChHHHHHHHHhc
Q 007912 435 LRRLSLSG-LLTDRVFEYIG-TYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMD------CPFGDKALLANAAKL 506 (585)
Q Consensus 435 L~~L~l~~-~~~~~~~~~l~-~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~------~~~~~~~~~~~~~~l 506 (585)
|+.|+|++ .++. ....+. ..+++|+.|+|++|.++. +..-+..+++|+.|++++ |.+.... ...+..+
T Consensus 730 L~~L~Ls~N~L~~-lp~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~i-p~~l~~L 805 (876)
T 4ecn_A 730 LTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQW-PTGITTC 805 (876)
T ss_dssp CCEEECCSSCCCC-CCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCC-CTTGGGC
T ss_pred ccEEECCCCCCcc-chHHhhhccCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCCCCCcccccccccC-hHHHhcC
Confidence 77888776 3331 111111 245677888888777765 211124677777777765 3332211 1234567
Q ss_pred ccCCEEEeecccC
Q 007912 507 ETMRSLWMSSCSV 519 (585)
Q Consensus 507 ~~L~~L~l~~~~i 519 (585)
++|+.|++++|.+
T Consensus 806 ~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 806 PSLIQLQIGSNDI 818 (876)
T ss_dssp SSCCEEECCSSCC
T ss_pred CCCCEEECCCCCC
Confidence 7777777777776
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.65 E-value=1.2e-17 Score=173.98 Aligned_cols=423 Identities=11% Similarity=0.059 Sum_probs=202.9
Q ss_pred hCCCceEEEecCCCCCCCCCCCcCCCCCcchhHHHHHHccCCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCC
Q 007912 65 RFPEVRSVELKGKPHFADFNLVPEGWGGYVYPWIRAMAGGYPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGF 144 (585)
Q Consensus 65 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 144 (585)
.+...+.++++++. +. .+|.. -.++|++|+++++.++......+ ..+++|++|+++++ .+
T Consensus 29 ~~~~~~~l~ls~~~-L~---~ip~~--------------~~~~L~~L~Ls~N~i~~~~~~~~-~~l~~L~~L~Ls~N-~l 88 (562)
T 3a79_B 29 SNELESMVDYSNRN-LT---HVPKD--------------LPPRTKALSLSQNSISELRMPDI-SFLSELRVLRLSHN-RI 88 (562)
T ss_dssp ----CCEEECTTSC-CC---SCCTT--------------SCTTCCEEECCSSCCCCCCGGGT-TTCTTCCEEECCSC-CC
T ss_pred ccCCCcEEEcCCCC-Cc---cCCCC--------------CCCCcCEEECCCCCccccChhhh-ccCCCccEEECCCC-CC
Confidence 45566788887653 22 23321 12789999999987765432233 36789999999987 34
Q ss_pred CHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCC
Q 007912 145 STHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVP 224 (585)
Q Consensus 145 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 224 (585)
+.... ..+..+++|++|++++|.+...+ .. .+++|++|+++++ .+........+..+++|++|+++++.-
T Consensus 89 ~~~~~-~~~~~l~~L~~L~Ls~N~l~~lp-----~~--~l~~L~~L~Ls~N--~l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 89 RSLDF-HVFLFNQDLEYLDVSHNRLQNIS-----CC--PMASLRHLDLSFN--DFDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp CEECT-TTTTTCTTCCEEECTTSCCCEEC-----SC--CCTTCSEEECCSS--CCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred CcCCH-HHhCCCCCCCEEECCCCcCCccC-----cc--ccccCCEEECCCC--CccccCchHhhcccCcccEEecCCCcc
Confidence 32211 22347899999999999877432 22 4779999999987 333211112345689999999988752
Q ss_pred hHHHHHHHhhCCCc--eEEcCccccC--CCCchhhhhhhhhhhccc--cccccc-CccccCcCchhhHhhcCCCCCEEEe
Q 007912 225 LEKLAHLLRQAPQL--VELGTGTYSA--DLRPDIFSNLAGAFSGCK--ELKSLS-GFWDVVPAYLPAVYSVCSGLTTLNL 297 (585)
Q Consensus 225 ~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~~l~~~~~~~~--~L~~L~-~~~~~~~~~l~~~~~~~~~L~~L~L 297 (585)
.. ..+..+++| +.|+++.... ... ....+..+. .+ .+. ................+++|+.+++
T Consensus 159 ~~---~~~~~l~~L~L~~L~L~~n~l~~~~~------~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l 228 (562)
T 3a79_B 159 RQ---LDLLPVAHLHLSCILLDLVSYHIKGG------ETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNI 228 (562)
T ss_dssp CT---TTTGGGTTSCEEEEEEEESSCCCCSS------SCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEE
T ss_pred cc---CchhhhhhceeeEEEeeccccccccc------CcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecc
Confidence 22 123444555 8888866543 110 000111111 00 000 0000000001111123445555555
Q ss_pred ecccCCch---hHHHHHhcCCCCcEEecccc-cchhHHHHHHh--cCCCCceEEeccCC---CCCCC-------------
Q 007912 298 SYATIQSP---DLIKLVSQCPKLQCLWVLDY-IEDSGLEALAA--TCKDLRELRVFPSE---PFGDE------------- 355 (585)
Q Consensus 298 ~~~~~~~~---~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~--~~~~L~~L~l~~~~---~~~~~------------- 355 (585)
++|..... .....+...++|+.|.+... +.+..+..+.. ..++|++|+++++. .....
T Consensus 229 ~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~ 308 (562)
T 3a79_B 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLM 308 (562)
T ss_dssp ECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEE
T ss_pred cccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchhee
Confidence 55431111 11112234445555554442 22222211111 22344444444211 00000
Q ss_pred ------CCCCcchHHHHHHH---------------------hCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeec
Q 007912 356 ------PNVSLTEQGLVLVS---------------------EGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCII 408 (585)
Q Consensus 356 ------~~~~l~~~~l~~l~---------------------~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 408 (585)
....+.+..+..+. ..+++|++|++..+.+++.....+ ..+++|+.|+++++
T Consensus 309 ~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N 387 (562)
T 3a79_B 309 IEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRN 387 (562)
T ss_dssp EEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSS
T ss_pred hhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhh-cccCCCCEEECCCC
Confidence 00011112222221 235566666555455543211111 23566666666543
Q ss_pred CCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcC-CCCCe
Q 007912 409 DPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGC-DSLRK 486 (585)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~-~~L~~ 486 (585)
.. +. -..+...+..+++|+.|++++ .++..........+++|+.|++++|.+++... ..+ ++|++
T Consensus 388 ~l------~~---~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~l~~~L~~ 454 (562)
T 3a79_B 388 GL------KN---FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF----RCLPPKVKV 454 (562)
T ss_dssp CC------CB---TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG----SSCCTTCSE
T ss_pred Cc------CC---cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh----hhhcCcCCE
Confidence 22 10 012223345667777777765 32221111112234667777777777765332 223 57777
Q ss_pred EEeeCCCCChHHHHHHHHhcccCCEEEeecccCCHHHHHHHHhhCCCcEEEEecCCCC
Q 007912 487 LEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFEACKLLGQKMPRLNVEVIDESGP 544 (585)
Q Consensus 487 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~ 544 (585)
|++++|.++.- ...+..+++|+.|++++|+++..... ....++.++...+.+++.
T Consensus 455 L~L~~N~l~~i--p~~~~~l~~L~~L~L~~N~l~~l~~~-~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 455 LDLHNNRIMSI--PKDVTHLQALQELNVASNQLKSVPDG-VFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp EECCSSCCCCC--CTTTTSSCCCSEEECCSSCCCCCCTT-STTTCTTCCCEECCSCCB
T ss_pred EECCCCcCccc--ChhhcCCCCCCEEECCCCCCCCCCHH-HHhcCCCCCEEEecCCCc
Confidence 77777766521 11223677788888888876532111 123566666666666543
No 42
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.64 E-value=1.6e-15 Score=148.41 Aligned_cols=217 Identities=11% Similarity=0.066 Sum_probs=123.1
Q ss_pred CCCEEEeecccCCchh---HHHHHhcC-CCCcEEecccc-cchhHHHHH---HhcC-CCCceEEeccCCCCCCCCCCCcc
Q 007912 291 GLTTLNLSYATIQSPD---LIKLVSQC-PKLQCLWVLDY-IEDSGLEAL---AATC-KDLRELRVFPSEPFGDEPNVSLT 361 (585)
Q Consensus 291 ~L~~L~L~~~~~~~~~---l~~l~~~~-~~L~~L~l~~~-~~~~~~~~l---~~~~-~~L~~L~l~~~~~~~~~~~~~l~ 361 (585)
+|++|++++|.+++.. +..++... ++|+.|+++++ +++.+...+ ...+ ++|++|++++ +.++
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~---------N~l~ 122 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGW---------NDFS 122 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS---------SCGG
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcC---------CcCC
Confidence 5666666665543322 22222232 55666666554 332222222 2223 5666666653 2344
Q ss_pred hHHHHHHH---hC-CCCCceehhcccCCcHHHHHHHH---hhCC-CCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCC
Q 007912 362 EQGLVLVS---EG-CPKLESVLYFCRRMSNDALVTIA---KNRP-SMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCK 433 (585)
Q Consensus 362 ~~~l~~l~---~~-~~~L~~L~~~~~~~~~~~~~~l~---~~~~-~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (585)
+.+...+. .. +++|++|++..+.+++.+...++ ...+ +|++|+++++.. +. .....+...+..++
T Consensus 123 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l------~~-~~~~~l~~~l~~~~ 195 (362)
T 3goz_A 123 SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL------AS-KNCAELAKFLASIP 195 (362)
T ss_dssp GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG------GG-SCHHHHHHHHHTSC
T ss_pred cHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC------ch-hhHHHHHHHHHhCC
Confidence 43333322 22 24666665555555544333332 2344 788888876532 20 00223444556664
Q ss_pred -CCcEEecCC-CCCHHHHHHHHh----hccccceeeccccCCCHHHHHHH---HhcCCCCCeEEeeCCC---CChHHHHH
Q 007912 434 -DLRRLSLSG-LLTDRVFEYIGT----YAKKLEMLSVAFAGESDLGLHHV---LSGCDSLRKLEIMDCP---FGDKALLA 501 (585)
Q Consensus 434 -~L~~L~l~~-~~~~~~~~~l~~----~~~~L~~L~l~~~~i~~~~~~~l---~~~~~~L~~L~l~~~~---~~~~~~~~ 501 (585)
+|++|++++ .+++.+...+.. ..++|++|++++|.+++.+...+ ...+++|++|++++|. +++..+..
T Consensus 196 ~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~ 275 (362)
T 3goz_A 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKA 275 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHH
T ss_pred CCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHH
Confidence 899999887 566654444433 24589999999999887655443 3557889999999996 77776665
Q ss_pred HHH---hcccCCEEEeecccCCHHH
Q 007912 502 NAA---KLETMRSLWMSSCSVSFEA 523 (585)
Q Consensus 502 ~~~---~l~~L~~L~l~~~~i~~~~ 523 (585)
+.. .+++|+.|++++|.+....
T Consensus 276 l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 276 LGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp HHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred HHHHhccCCceEEEecCCCcCCCcc
Confidence 554 4556788889999876653
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.63 E-value=3.1e-16 Score=157.86 Aligned_cols=200 Identities=20% Similarity=0.178 Sum_probs=120.9
Q ss_pred cCCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCC
Q 007912 104 GYPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDT 183 (585)
Q Consensus 104 ~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 183 (585)
.+++|++|+++++.++.. ..+ ..+++|++|+++++. ++.. . ...+++|++|++++|.+.... + ..
T Consensus 40 ~l~~L~~L~Ls~n~l~~~--~~l-~~l~~L~~L~Ls~n~-l~~~--~--~~~l~~L~~L~Ls~N~l~~~~---~----~~ 104 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM--TGI-EKLTGLTKLICTSNN-ITTL--D--LSQNTNLTYLACDSNKLTNLD---V----TP 104 (457)
T ss_dssp HHTTCCEEECCSSCCCCC--TTG-GGCTTCSEEECCSSC-CSCC--C--CTTCTTCSEEECCSSCCSCCC---C----TT
T ss_pred HcCCCCEEEccCCCcccC--hhh-cccCCCCEEEccCCc-CCeE--c--cccCCCCCEEECcCCCCceee---c----CC
Confidence 468999999999887753 233 467899999999873 4332 1 347899999999999877642 2 34
Q ss_pred CCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHHHHHhhCCCceEEcCccccCCCCchhhhhhhhhhh
Q 007912 184 CTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVELGTGTYSADLRPDIFSNLAGAFS 263 (585)
Q Consensus 184 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 263 (585)
+++|++|+++++ .+.... ...+++|++|+++++. +..+. +..+++|++|+++.+.... .+ .+.
T Consensus 105 l~~L~~L~L~~N--~l~~l~----~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~------~~--~~~ 167 (457)
T 3bz5_A 105 LTKLTYLNCDTN--KLTKLD----VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKIT------KL--DVT 167 (457)
T ss_dssp CTTCCEEECCSS--CCSCCC----CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCC------CC--CCT
T ss_pred CCcCCEEECCCC--cCCeec----CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccc------cc--ccc
Confidence 679999999977 333321 4568999999998875 22221 5567888888886553211 00 133
Q ss_pred cccccccccC-ccccCcCchhhHhhcCCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc-cchhHHHHHHhcCCCC
Q 007912 264 GCKELKSLSG-FWDVVPAYLPAVYSVCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY-IEDSGLEALAATCKDL 341 (585)
Q Consensus 264 ~~~~L~~L~~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L 341 (585)
.+++|+.|.- ...+.. ++ ...+++|+.|++++|.+.... +..+++|+.|+++++ +... . ...+++|
T Consensus 168 ~l~~L~~L~ls~n~l~~--l~--l~~l~~L~~L~l~~N~l~~~~----l~~l~~L~~L~Ls~N~l~~i--p--~~~l~~L 235 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKITE--LD--VSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSNKLTEI--D--VTPLTQL 235 (457)
T ss_dssp TCTTCCEEECCSSCCCC--CC--CTTCTTCCEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCC--C--CTTCTTC
T ss_pred cCCcCCEEECCCCccce--ec--cccCCCCCEEECcCCcCCeec----cccCCCCCEEECcCCccccc--C--ccccCCC
Confidence 4455555531 111111 11 234566666666666644332 345566666666654 2221 1 2245666
Q ss_pred ceEEec
Q 007912 342 RELRVF 347 (585)
Q Consensus 342 ~~L~l~ 347 (585)
+.|+++
T Consensus 236 ~~L~l~ 241 (457)
T 3bz5_A 236 TYFDCS 241 (457)
T ss_dssp SEEECC
T ss_pred CEEEee
Confidence 666665
No 44
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.63 E-value=4.4e-17 Score=161.60 Aligned_cols=323 Identities=14% Similarity=0.109 Sum_probs=183.2
Q ss_pred hCCCceEEEecCCCCCCCCCCCcCCCCCcchhHHHHHHccCCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCC
Q 007912 65 RFPEVRSVELKGKPHFADFNLVPEGWGGYVYPWIRAMAGGYPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGF 144 (585)
Q Consensus 65 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 144 (585)
.+++++.+++.++. +.. +| ..++..+++|++|+++++.+.......+ ..+++|++|+++++. +
T Consensus 43 ~l~~l~~l~l~~~~-l~~---l~-----------~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~-l 105 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRK---LP-----------AALLDSFRQVELLNLNDLQIEEIDTYAF-AYAHTIQKLYMGFNA-I 105 (390)
T ss_dssp GGCCCSEEEEESCE-ESE---EC-----------THHHHHCCCCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSC-C
T ss_pred ccCCceEEEecCCc-hhh---CC-----------hhHhcccccCcEEECCCCcccccChhhc-cCCCCcCEEECCCCC-C
Confidence 35778888887643 111 11 2345678999999999987765322223 356889999999863 3
Q ss_pred CHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCC
Q 007912 145 STHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVP 224 (585)
Q Consensus 145 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 224 (585)
+... ...+..+++|++|++++|.+.......+ ..+++|++|+++++. +.... ......+++|++|+++++.-
T Consensus 106 ~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~~~----~~l~~L~~L~L~~n~--l~~~~-~~~~~~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 106 RYLP-PHVFQNVPLLTVLVLERNDLSSLPRGIF----HNTPKLTTLSMSNNN--LERIE-DDTFQATTSLQNLQLSSNRL 177 (390)
T ss_dssp CCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSC--CCBCC-TTTTSSCTTCCEEECCSSCC
T ss_pred CcCC-HHHhcCCCCCCEEECCCCccCcCCHHHh----cCCCCCcEEECCCCc--cCccC-hhhccCCCCCCEEECCCCcC
Confidence 3221 1223478999999999998775433222 346799999999773 32211 11234578999999987741
Q ss_pred hHHHHHHHhhCCCceEEcCccccCCCCchhhhhhhhhhhcccccccccCccccCcCchhhHhhcCCCCCEEEeecccCCc
Q 007912 225 LEKLAHLLRQAPQLVELGTGTYSADLRPDIFSNLAGAFSGCKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYATIQS 304 (585)
Q Consensus 225 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 304 (585)
..+ .+..+++|+.+.+++.... . ....++|+.|++++|.+..
T Consensus 178 -~~~--~~~~l~~L~~L~l~~n~l~----------------------------------~-~~~~~~L~~L~l~~n~l~~ 219 (390)
T 3o6n_A 178 -THV--DLSLIPSLFHANVSYNLLS----------------------------------T-LAIPIAVEELDASHNSINV 219 (390)
T ss_dssp -SBC--CGGGCTTCSEEECCSSCCS----------------------------------E-EECCSSCSEEECCSSCCCE
T ss_pred -Ccc--ccccccccceeeccccccc----------------------------------c-cCCCCcceEEECCCCeeee
Confidence 110 0223344444443221110 0 0113456666666655332
Q ss_pred hhHHHHHhcCCCCcEEecccc-cchhHHHHHHhcCCCCceEEeccCCCCCCCCCCCcchHHHHHHHhCCCCCceehhccc
Q 007912 305 PDLIKLVSQCPKLQCLWVLDY-IEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSLTEQGLVLVSEGCPKLESVLYFCR 383 (585)
Q Consensus 305 ~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~ 383 (585)
... ...++|+.|++.++ +.+. . ....+++|++|+++ .+
T Consensus 220 ~~~----~~~~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~Ls----------------------------------~n 258 (390)
T 3o6n_A 220 VRG----PVNVELTILKLQHNNLTDT--A-WLLNYPGLVEVDLS----------------------------------YN 258 (390)
T ss_dssp EEC----CCCSSCCEEECCSSCCCCC--G-GGGGCTTCSEEECC----------------------------------SS
T ss_pred ccc----cccccccEEECCCCCCccc--H-HHcCCCCccEEECC----------------------------------CC
Confidence 211 12345555555543 2211 1 11244555555554 33
Q ss_pred CCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhcccccee
Q 007912 384 RMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEML 462 (585)
Q Consensus 384 ~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L 462 (585)
.++......+ ..+++|+.|+++++.. +. +......+++|+.|++++ .++.. ... ...+++|+.|
T Consensus 259 ~l~~~~~~~~-~~l~~L~~L~L~~n~l------~~------~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~~l~~L~~L 323 (390)
T 3o6n_A 259 ELEKIMYHPF-VKMQRLERLYISNNRL------VA------LNLYGQPIPTLKVLDLSHNHLLHV-ERN-QPQFDRLENL 323 (390)
T ss_dssp CCCEEESGGG-TTCSSCCEEECCSSCC------CE------EECSSSCCTTCCEEECCSSCCCCC-GGG-HHHHTTCSEE
T ss_pred cCCCcChhHc-cccccCCEEECCCCcC------cc------cCcccCCCCCCCEEECCCCcceec-Ccc-ccccCcCCEE
Confidence 3322111111 2467777777765432 10 001124578899999987 33321 111 2346789999
Q ss_pred eccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCC
Q 007912 463 SVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMR 510 (585)
Q Consensus 463 ~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 510 (585)
++++|.+++.. ...+++|++|++++|++..+....+...++...
T Consensus 324 ~L~~N~i~~~~----~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~ 367 (390)
T 3o6n_A 324 YLDHNSIVTLK----LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPA 367 (390)
T ss_dssp ECCSSCCCCCC----CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTT
T ss_pred ECCCCccceeC----chhhccCCEEEcCCCCccchhHHHHHHHHHhhc
Confidence 99999987654 366899999999999998888776666655443
No 45
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.63 E-value=8.8e-15 Score=143.18 Aligned_cols=243 Identities=15% Similarity=0.132 Sum_probs=171.5
Q ss_pred hhhHhhcCCCCCEEEeecccCCchhH---HHHHhcCC-CCcEEecccc-cchhHHHHHHh---c-CCCCceEEeccCCCC
Q 007912 282 LPAVYSVCSGLTTLNLSYATIQSPDL---IKLVSQCP-KLQCLWVLDY-IEDSGLEALAA---T-CKDLRELRVFPSEPF 352 (585)
Q Consensus 282 l~~~~~~~~~L~~L~L~~~~~~~~~l---~~l~~~~~-~L~~L~l~~~-~~~~~~~~l~~---~-~~~L~~L~l~~~~~~ 352 (585)
++.+....++|++|++++|.+++... ...+..++ +|++|+++++ +++.+...+.. . +++|++|++++
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~---- 89 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSG---- 89 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS----
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcC----
Confidence 44555556679999999998655443 34556777 8999999986 55544444433 3 49999999984
Q ss_pred CCCCCCCcchHH---HHHHHhCC-CCCceehhcccCCcHHHHHHHHhh----CCCCceeeeeecCCCCCCCCCCCcchhh
Q 007912 353 GDEPNVSLTEQG---LVLVSEGC-PKLESVLYFCRRMSNDALVTIAKN----RPSMIRFRLCIIDPQTPDYLTLEPLDVG 424 (585)
Q Consensus 353 ~~~~~~~l~~~~---l~~l~~~~-~~L~~L~~~~~~~~~~~~~~l~~~----~~~L~~L~L~~~~~~~~~~~~~~~~~~~ 424 (585)
+.+++.+ +......+ ++|++|++..+.+++.+...+... +++|++|+++++. ++ +.+
T Consensus 90 -----n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~------l~----~~~ 154 (362)
T 3goz_A 90 -----NFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND------LG----IKS 154 (362)
T ss_dssp -----SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC------GG----GSC
T ss_pred -----CcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc------CC----HHH
Confidence 3455443 33334445 899999877788887666665543 4699999998753 33 333
Q ss_pred ---HHHHhhhCC-CCcEEecCC-CCCHHHHHHHHh---hc-cccceeeccccCCCHHHHHHHHh----cCCCCCeEEeeC
Q 007912 425 ---FGAIVQHCK-DLRRLSLSG-LLTDRVFEYIGT---YA-KKLEMLSVAFAGESDLGLHHVLS----GCDSLRKLEIMD 491 (585)
Q Consensus 425 ---~~~~~~~~~-~L~~L~l~~-~~~~~~~~~l~~---~~-~~L~~L~l~~~~i~~~~~~~l~~----~~~~L~~L~l~~ 491 (585)
+...+...+ +|++|++++ .+++.+...++. .+ ++|++|++++|.+++.+...+.. ..++|++|++++
T Consensus 155 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~ 234 (362)
T 3goz_A 155 SDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL 234 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCS
T ss_pred HHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcC
Confidence 334445565 999999988 566655554443 34 58999999999998876655433 246999999999
Q ss_pred CCCChHHH---HHHHHhcccCCEEEeeccc---CCHHHHHHHHhhCCCcE---EEEecCCC
Q 007912 492 CPFGDKAL---LANAAKLETMRSLWMSSCS---VSFEACKLLGQKMPRLN---VEVIDESG 543 (585)
Q Consensus 492 ~~~~~~~~---~~~~~~l~~L~~L~l~~~~---i~~~~~~~l~~~~~~l~---~~~~~~~~ 543 (585)
|.+++.+. ..+...+++|+.|++++|. ++..++..+...++.+. ...+..+.
T Consensus 235 N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 235 NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp SCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred CCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 99887543 4455778999999999998 88898999888776653 33444443
No 46
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.63 E-value=5.2e-17 Score=165.82 Aligned_cols=176 Identities=17% Similarity=0.113 Sum_probs=98.4
Q ss_pred CCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHh
Q 007912 131 KNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVR 210 (585)
Q Consensus 131 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~ 210 (585)
++++.|+++++ .++.... ..+..+++|++|++++|.+.......+. .+++|++|+++++. +.... ...+..
T Consensus 32 ~~l~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~----~l~~L~~L~L~~n~--l~~~~-~~~~~~ 102 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTLNQ-DEFASFPHLEELELNENIVSAVEPGAFN----NLFNLRTLGLRSNR--LKLIP-LGVFTG 102 (477)
T ss_dssp TTCSEEECCSS-CCCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTT----TCTTCCEEECCSSC--CCSCC-TTSSTT
T ss_pred CCCcEEECCCC-ccceECH-hHccCCCCCCEEECCCCccCEeChhhhh----CCccCCEEECCCCc--CCccC-cccccC
Confidence 57999999876 3332211 2234789999999999887654433333 46689999998762 22111 112345
Q ss_pred CCCCceEEeCCCCChHHHHHHHhhCCCceEEcCccccCCCCchhhhhhhhhhhcccccccccCccccCcCchhhHhhcCC
Q 007912 211 CPNLRTLRLNRAVPLEKLAHLLRQAPQLVELGTGTYSADLRPDIFSNLAGAFSGCKELKSLSGFWDVVPAYLPAVYSVCS 290 (585)
Q Consensus 211 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~ 290 (585)
+++|++|+++++.-....+..+..+++|++|++++.... ... +..+..++
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~--------------------------~~~----~~~~~~l~ 152 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV--------------------------YIS----HRAFSGLN 152 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC--------------------------EEC----TTSSTTCT
T ss_pred CCCCCEEECCCCccccCChhHccccccCCEEECCCCccc--------------------------eeC----hhhccCCC
Confidence 788888888877522222233444555555555432211 011 11122467
Q ss_pred CCCEEEeecccCCchhHHHHHhcCCCCcEEecccc-cchhHHHHHHhcCCCCceEEec
Q 007912 291 GLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY-IEDSGLEALAATCKDLRELRVF 347 (585)
Q Consensus 291 ~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~l~ 347 (585)
+|+.|++++|.+..... ..+..+++|+.|++.++ +..... .....+++|+.|+++
T Consensus 153 ~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~ 208 (477)
T 2id5_A 153 SLEQLTLEKCNLTSIPT-EALSHLHGLIVLRLRHLNINAIRD-YSFKRLYRLKVLEIS 208 (477)
T ss_dssp TCCEEEEESCCCSSCCH-HHHTTCTTCCEEEEESCCCCEECT-TCSCSCTTCCEEEEE
T ss_pred CCCEEECCCCcCcccCh-hHhcccCCCcEEeCCCCcCcEeCh-hhcccCcccceeeCC
Confidence 78888888777544322 23456777777777764 211100 111256677777777
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.61 E-value=2.4e-18 Score=182.79 Aligned_cols=112 Identities=18% Similarity=0.177 Sum_probs=64.0
Q ss_pred ccCCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCC
Q 007912 103 GGYPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPD 182 (585)
Q Consensus 103 ~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 182 (585)
..+++|++|+|++|.++...-..+ ..+++|++|+|+++. ++... ...+.++++|++|++++|.+.......+.
T Consensus 73 ~~l~~L~~L~Ls~N~i~~i~~~~f-~~L~~L~~L~Ls~N~-l~~l~-~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~---- 145 (635)
T 4g8a_A 73 FSFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILTGNP-IQSLA-LGAFSGLSSLQKLVAVETNLASLENFPIG---- 145 (635)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTT-TTCTTCCEEECTTCC-CCEEC-GGGGTTCTTCCEEECTTSCCCCSTTCCCT----
T ss_pred hCCCCCCEEECCCCcCCCcChhHh-cCCCCCCEEEccCCc-CCCCC-HHHhcCCCCCCEEECCCCcCCCCChhhhh----
Confidence 456788888888876553211112 246778888887752 32211 12234677888888887776654333232
Q ss_pred CCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCC
Q 007912 183 TCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAV 223 (585)
Q Consensus 183 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 223 (585)
.+++|++|+++++ .+...........+++|++|+++++.
T Consensus 146 ~L~~L~~L~Ls~N--~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 146 HLKTLKELNVAHN--LIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp TCTTCCEEECCSS--CCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred cCcccCeeccccC--ccccCCCchhhccchhhhhhcccCcc
Confidence 3557788887765 22221122234456777777777654
No 48
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.60 E-value=2.8e-17 Score=167.75 Aligned_cols=201 Identities=14% Similarity=0.061 Sum_probs=97.9
Q ss_pred CCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCC
Q 007912 106 PWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCT 185 (585)
Q Consensus 106 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 185 (585)
++++.|+++++.++......+ ..+++|++|+|+++ .++.... ..+..+++|++|++++|.+.......+ ..++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~ 104 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEF-ASFPHLEELELNEN-IVSAVEP-GAFNNLFNLRTLGLRSNRLKLIPLGVF----TGLS 104 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTT-TTCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSCCCSCCTTSS----TTCT
T ss_pred CCCcEEECCCCccceECHhHc-cCCCCCCEEECCCC-ccCEeCh-hhhhCCccCCEEECCCCcCCccCcccc----cCCC
Confidence 456777777765554321222 24566777777665 2222111 112366777777777776654332222 2355
Q ss_pred cccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHHHHHhhCCCceEEcCccccCCCCchhhhhhhhhhhcc
Q 007912 186 SLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVELGTGTYSADLRPDIFSNLAGAFSGC 265 (585)
Q Consensus 186 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~ 265 (585)
+|++|+++++. +.... ...+..+++|++|+++++.-....+..+..+++|++|++.++....
T Consensus 105 ~L~~L~Ls~n~--i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------------- 166 (477)
T 2id5_A 105 NLTKLDISENK--IVILL-DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS--------------- 166 (477)
T ss_dssp TCCEEECTTSC--CCEEC-TTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS---------------
T ss_pred CCCEEECCCCc--cccCC-hhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc---------------
Confidence 77777777552 22110 1112456777777776654211112223445566666554332211
Q ss_pred cccccccCccccCcCchhhHhhcCCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccccchhHHHHHHhcCCCCceEE
Q 007912 266 KELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDYIEDSGLEALAATCKDLRELR 345 (585)
Q Consensus 266 ~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~ 345 (585)
........+++|+.|++++|.+..... ..+..+++|+.|++.++-....+........+|+.|+
T Consensus 167 ---------------~~~~~l~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 230 (477)
T 2id5_A 167 ---------------IPTEALSHLHGLIVLRLRHLNINAIRD-YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230 (477)
T ss_dssp ---------------CCHHHHTTCTTCCEEEEESCCCCEECT-TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEE
T ss_pred ---------------cChhHhcccCCCcEEeCCCCcCcEeCh-hhcccCcccceeeCCCCccccccCcccccCccccEEE
Confidence 111223346777777777766433221 1234567777777765311000000001234677777
Q ss_pred ec
Q 007912 346 VF 347 (585)
Q Consensus 346 l~ 347 (585)
++
T Consensus 231 l~ 232 (477)
T 2id5_A 231 IT 232 (477)
T ss_dssp EE
T ss_pred Cc
Confidence 76
No 49
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=4.1e-16 Score=163.29 Aligned_cols=300 Identities=15% Similarity=0.101 Sum_probs=169.6
Q ss_pred HHHccCCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccc
Q 007912 100 AMAGGYPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSK 179 (585)
Q Consensus 100 ~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~ 179 (585)
.++..+++|+.|+++++.++......+ ..+++|+.|+|+++. ++... ...+..+++|++|++++|.+.......+
T Consensus 69 ~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~~~-- 143 (597)
T 3oja_B 69 ALLDSFRQVELLNLNDLQIEEIDTYAF-AYAHTIQKLYMGFNA-IRYLP-PHVFQNVPLLTVLVLERNDLSSLPRGIF-- 143 (597)
T ss_dssp HHHHHCCCCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTT--
T ss_pred HHHccCCCCcEEECCCCCCCCCChHHh-cCCCCCCEEECCCCc-CCCCC-HHHHcCCCCCCEEEeeCCCCCCCCHHHh--
Confidence 345678999999999987765322223 357899999999873 33221 1233578999999999998775443322
Q ss_pred cCCCCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHHHHHhhCCCceEEcCccccCCCCchhhhhhh
Q 007912 180 FPDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVELGTGTYSADLRPDIFSNLA 259 (585)
Q Consensus 180 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 259 (585)
..+++|++|+++++. +..... ..+..+++|++|+++++. +..+ .+..++.|+.|++++....
T Consensus 144 --~~l~~L~~L~Ls~N~--l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~--~~~~l~~L~~L~l~~n~l~---------- 205 (597)
T 3oja_B 144 --HNTPKLTTLSMSNNN--LERIED-DTFQATTSLQNLQLSSNR-LTHV--DLSLIPSLFHANVSYNLLS---------- 205 (597)
T ss_dssp --TTCTTCCEEECCSSC--CCBCCT-TTTTTCTTCCEEECTTSC-CSBC--CGGGCTTCSEEECCSSCCS----------
T ss_pred --ccCCCCCEEEeeCCc--CCCCCh-hhhhcCCcCcEEECcCCC-CCCc--ChhhhhhhhhhhcccCccc----------
Confidence 346799999999773 322111 123567999999998874 1111 0223444444444322110
Q ss_pred hhhhcccccccccCccccCcCchhhHhhcCCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc-cchhHHHHHHhcC
Q 007912 260 GAFSGCKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY-IEDSGLEALAATC 338 (585)
Q Consensus 260 ~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~ 338 (585)
. ....++|+.|++++|.+..... ...++|+.|+++++ +.+. .. ...+
T Consensus 206 ------------------------~-l~~~~~L~~L~ls~n~l~~~~~----~~~~~L~~L~L~~n~l~~~--~~-l~~l 253 (597)
T 3oja_B 206 ------------------------T-LAIPIAVEELDASHNSINVVRG----PVNVELTILKLQHNNLTDT--AW-LLNY 253 (597)
T ss_dssp ------------------------E-EECCTTCSEEECCSSCCCEEEC----SCCSCCCEEECCSSCCCCC--GG-GGGC
T ss_pred ------------------------c-ccCCchhheeeccCCccccccc----ccCCCCCEEECCCCCCCCC--hh-hccC
Confidence 0 0123456666666665332110 11245555555553 2211 11 1245
Q ss_pred CCCceEEeccCCCCCCCCCCCcchHHHHHHHhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCC
Q 007912 339 KDLRELRVFPSEPFGDEPNVSLTEQGLVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTL 418 (585)
Q Consensus 339 ~~L~~L~l~~~~~~~~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~ 418 (585)
++|+.|+++ .+.++......+ ..+++|+.|+|+++.. +.
T Consensus 254 ~~L~~L~Ls----------------------------------~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l------~~ 292 (597)
T 3oja_B 254 PGLVEVDLS----------------------------------YNELEKIMYHPF-VKMQRLERLYISNNRL------VA 292 (597)
T ss_dssp TTCSEEECC----------------------------------SSCCCEEESGGG-TTCSSCCEEECTTSCC------CE
T ss_pred CCCCEEECC----------------------------------CCccCCCCHHHh-cCccCCCEEECCCCCC------CC
Confidence 555555554 233322111111 2356777777765432 10
Q ss_pred CcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChH
Q 007912 419 EPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDK 497 (585)
Q Consensus 419 ~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 497 (585)
+......+++|+.|++++ .++. +......+++|+.|++++|.++... ...+++|+.|++++|++...
T Consensus 293 ------l~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 293 ------LNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp ------EECSSSCCTTCCEEECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCCCC----CCTTCCCSEEECCSSCEEHH
T ss_pred ------CCcccccCCCCcEEECCCCCCCc--cCcccccCCCCCEEECCCCCCCCcC----hhhcCCCCEEEeeCCCCCCh
Confidence 011124567888888877 3331 1111234678999999999876654 25678999999999988877
Q ss_pred HHHHHHHhcc
Q 007912 498 ALLANAAKLE 507 (585)
Q Consensus 498 ~~~~~~~~l~ 507 (585)
....+...++
T Consensus 361 ~~~~~~~~~~ 370 (597)
T 3oja_B 361 SLRALFRNVA 370 (597)
T ss_dssp HHHHHTTTCC
T ss_pred hHHHHHHHHh
Confidence 7665554443
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.46 E-value=4.4e-15 Score=149.29 Aligned_cols=115 Identities=18% Similarity=0.197 Sum_probs=59.5
Q ss_pred CCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCC
Q 007912 106 PWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCT 185 (585)
Q Consensus 106 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 185 (585)
++|++|+++++.++. +. ...++|++|+++++. ++. +....++|++|++++|.+.... . ...++
T Consensus 91 ~~L~~L~l~~n~l~~--lp---~~~~~L~~L~l~~n~-l~~-----l~~~~~~L~~L~L~~n~l~~lp-----~-~~~l~ 153 (454)
T 1jl5_A 91 PHLESLVASCNSLTE--LP---ELPQSLKSLLVDNNN-LKA-----LSDLPPLLEYLGVSNNQLEKLP-----E-LQNSS 153 (454)
T ss_dssp TTCSEEECCSSCCSS--CC---CCCTTCCEEECCSSC-CSC-----CCSCCTTCCEEECCSSCCSSCC-----C-CTTCT
T ss_pred CCCCEEEccCCcCCc--cc---cccCCCcEEECCCCc-cCc-----ccCCCCCCCEEECcCCCCCCCc-----c-cCCCC
Confidence 567777777766553 11 123567777776652 221 1111157777777777655421 1 23455
Q ss_pred cccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHHHHHhhCCCceEEcCccc
Q 007912 186 SLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVELGTGTY 246 (585)
Q Consensus 186 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 246 (585)
+|++|+++++. +.. + ....++|++|+++++. +..++ .+..+++|+.|+++++
T Consensus 154 ~L~~L~l~~N~--l~~--l---p~~~~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 154 FLKIIDVDNNS--LKK--L---PDLPPSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp TCCEEECCSSC--CSC--C---CCCCTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCEEECCCCc--Ccc--c---CCCcccccEEECcCCc-CCcCc-cccCCCCCCEEECCCC
Confidence 77777777652 221 0 0113467777776653 22222 2445566666665443
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.45 E-value=1.6e-13 Score=142.23 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=37.1
Q ss_pred ccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCHHHHHHH
Q 007912 456 AKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFEACKLL 527 (585)
Q Consensus 456 ~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l 527 (585)
+++|+.|++++|.++.... .+++|+.|++++|.++.. ...+.++++|+.|++++|+++......+
T Consensus 240 l~~L~~L~Ls~N~L~~lp~-----~~~~L~~L~Ls~N~L~~l--p~~l~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 240 PSELKELMVSGNRLTSLPM-----LPSGLLSLSVYRNQLTRL--PESLIHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp CTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCCSC--CGGGGGSCTTCEEECCSCCCCHHHHHHH
T ss_pred CCcCcEEECCCCCCCcCCc-----ccccCcEEeCCCCCCCcC--CHHHhhccccCEEEecCCCCCCcCHHHH
Confidence 4556666666666543211 456677777777765521 2234566677777777776665554444
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.42 E-value=2.1e-14 Score=144.37 Aligned_cols=327 Identities=16% Similarity=0.061 Sum_probs=169.1
Q ss_pred HccCCCCcEEEecccccChH---------HH--HHHH-HhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCC
Q 007912 102 AGGYPWLEELKLKRMVVTDE---------SL--ELIA-KSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDV 169 (585)
Q Consensus 102 ~~~~~~L~~L~l~~~~~~~~---------~l--~~l~-~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~ 169 (585)
...+++|++|+++++.+... .+ ..+. -..+++++|+++++. ++. +.. ..++|++|++++|.+
T Consensus 30 i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~--lp~---~~~~L~~L~l~~n~l 103 (454)
T 1jl5_A 30 AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSS--LPE---LPPHLESLVASCNSL 103 (454)
T ss_dssp ----CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSC--CCS---CCTTCSEEECCSSCC
T ss_pred HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-ccc--CCC---CcCCCCEEEccCCcC
Confidence 35667888888877643211 00 0000 011346788887763 221 111 236788888887776
Q ss_pred CCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHHHHHhhCCCceEEcCccccCC
Q 007912 170 EDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVELGTGTYSAD 249 (585)
Q Consensus 170 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 249 (585)
.... ...++|++|+++++. +.. +....++|++|+++++. +..++ .+..+++|++|++++....
T Consensus 104 ~~lp--------~~~~~L~~L~l~~n~--l~~-----l~~~~~~L~~L~L~~n~-l~~lp-~~~~l~~L~~L~l~~N~l~ 166 (454)
T 1jl5_A 104 TELP--------ELPQSLKSLLVDNNN--LKA-----LSDLPPLLEYLGVSNNQ-LEKLP-ELQNSSFLKIIDVDNNSLK 166 (454)
T ss_dssp SSCC--------CCCTTCCEEECCSSC--CSC-----CCSCCTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCS
T ss_pred Cccc--------cccCCCcEEECCCCc--cCc-----ccCCCCCCCEEECcCCC-CCCCc-ccCCCCCCCEEECCCCcCc
Confidence 5421 123578888887662 221 00112578888887764 33344 2666778888887665443
Q ss_pred CCchhhhhhhhhhhcccccccccCc-cccCcCchhhHhhcCCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc-cc
Q 007912 250 LRPDIFSNLAGAFSGCKELKSLSGF-WDVVPAYLPAVYSVCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY-IE 327 (585)
Q Consensus 250 ~~~~~~~~l~~~~~~~~~L~~L~~~-~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~ 327 (585)
..+. ..++|++|.-. ..... ++. ...+++|+.|++++|.+... ....++|+.|+++++ +.
T Consensus 167 ~lp~----------~~~~L~~L~L~~n~l~~--l~~-~~~l~~L~~L~l~~N~l~~l-----~~~~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 167 KLPD----------LPPSLEFIAAGNNQLEE--LPE-LQNLPFLTAIYADNNSLKKL-----PDLPLSLESIVAGNNILE 228 (454)
T ss_dssp CCCC----------CCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSSC-----CCCCTTCCEEECCSSCCS
T ss_pred ccCC----------CcccccEEECcCCcCCc--Ccc-ccCCCCCCEEECCCCcCCcC-----CCCcCcccEEECcCCcCC
Confidence 2111 11355555311 11111 222 23467777777777664321 112246777777664 22
Q ss_pred hhHHHHHHhcCCCCceEEeccCCCCCCCCCCCcchHHHHHHHhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeee
Q 007912 328 DSGLEALAATCKDLRELRVFPSEPFGDEPNVSLTEQGLVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCI 407 (585)
Q Consensus 328 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~ 407 (585)
.+..+ ..+++|++|++++. .++. +....++|+.|....+.++. +....++|+.|++++
T Consensus 229 --~lp~~-~~l~~L~~L~l~~N---------~l~~-----l~~~~~~L~~L~l~~N~l~~-----l~~~~~~L~~L~ls~ 286 (454)
T 1jl5_A 229 --ELPEL-QNLPFLTTIYADNN---------LLKT-----LPDLPPSLEALNVRDNYLTD-----LPELPQSLTFLDVSE 286 (454)
T ss_dssp --SCCCC-TTCTTCCEEECCSS---------CCSS-----CCSCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCS
T ss_pred --ccccc-CCCCCCCEEECCCC---------cCCc-----ccccccccCEEECCCCcccc-----cCcccCcCCEEECcC
Confidence 11112 25667777777631 2221 11124567777554444442 111235677777765
Q ss_pred cCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCe
Q 007912 408 IDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRK 486 (585)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~ 486 (585)
+.... +. ...++|+.|++++ .++. +....++|+.|++++|.+++. ...+++|++
T Consensus 287 N~l~~---l~------------~~~~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~l-----p~~~~~L~~ 341 (454)
T 1jl5_A 287 NIFSG---LS------------ELPPNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIEL-----PALPPRLER 341 (454)
T ss_dssp SCCSE---ES------------CCCTTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSCCSCC-----CCCCTTCCE
T ss_pred CccCc---cc------------CcCCcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCccccc-----cccCCcCCE
Confidence 43210 00 1125677777766 3332 112234788888888877641 123577888
Q ss_pred EEeeCCCCChHHHHHHHHhcccCCEEEeecccCCH
Q 007912 487 LEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSF 521 (585)
Q Consensus 487 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~ 521 (585)
|++++|.++... . .+++|+.|++++|+++.
T Consensus 342 L~L~~N~l~~lp--~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 342 LIASFNHLAEVP--E---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp EECCSSCCSCCC--C---CCTTCCEEECCSSCCSS
T ss_pred EECCCCcccccc--c---hhhhccEEECCCCCCCc
Confidence 888888665321 1 46778888888887654
No 53
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.41 E-value=1.8e-12 Score=126.18 Aligned_cols=146 Identities=20% Similarity=0.153 Sum_probs=71.7
Q ss_pred CCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHh----hhCCCCcEEecCC-CCCHHH
Q 007912 374 KLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIV----QHCKDLRRLSLSG-LLTDRV 448 (585)
Q Consensus 374 ~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~L~~L~l~~-~~~~~~ 448 (585)
+|++|++..+.+++.++..++..+++|+.|+|+++. ++ +.+...+. ...++|++|+|++ .+++.+
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~------l~----~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~ 171 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS------LG----PEACKDLRDLLLHDQCQITTLRLSNNPLTAAG 171 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC------CC----HHHHHHHHHHHHSTTCCCCEEECCSSCCHHHH
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC------CC----HHHHHHHHHHHHhcCCccceeeCCCCCCChHH
Confidence 444444333444444444444444455555554331 22 33322222 1234555555555 445544
Q ss_pred HHHHHh---hccccceeeccccCCCHHHHHHHH---hcCCCCCeEEeeCCCCChHHHHHHH---HhcccCCEEEeecccC
Q 007912 449 FEYIGT---YAKKLEMLSVAFAGESDLGLHHVL---SGCDSLRKLEIMDCPFGDKALLANA---AKLETMRSLWMSSCSV 519 (585)
Q Consensus 449 ~~~l~~---~~~~L~~L~l~~~~i~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~~---~~l~~L~~L~l~~~~i 519 (585)
...++. .+++|++|+|++|.+++.++..++ ..+++|++|++++|.+++.+...+. ..+++|++|++++|.|
T Consensus 172 ~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 172 VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 444432 244566666666666655544432 2345566666666666655543332 3345666666666666
Q ss_pred CHHHHHHHHh
Q 007912 520 SFEACKLLGQ 529 (585)
Q Consensus 520 ~~~~~~~l~~ 529 (585)
++.++..+..
T Consensus 252 ~~~g~~~L~~ 261 (372)
T 3un9_A 252 SSEGRQVLRD 261 (372)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 6666655543
No 54
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.39 E-value=6.4e-12 Score=122.33 Aligned_cols=194 Identities=19% Similarity=0.154 Sum_probs=110.4
Q ss_pred CCCCCEEEeecccCCchhHHHHHhc----CCCCcEEecccc-cchhHHHHHHhcCCCCceEEeccCCCCCCCCCCCcchH
Q 007912 289 CSGLTTLNLSYATIQSPDLIKLVSQ----CPKLQCLWVLDY-IEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSLTEQ 363 (585)
Q Consensus 289 ~~~L~~L~L~~~~~~~~~l~~l~~~----~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 363 (585)
.++|+.|++++|.++......+... +++|+.|+++++ +++.++..+...+++|++|+++. +.+++.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~---------n~l~~~ 141 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQL---------NSLGPE 141 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCS---------SCCCHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCC---------CCCCHH
Confidence 4678888888888776655443322 246666666654 55555555555555666666652 345554
Q ss_pred HHHHHHhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHH---HHhhhCCCCcEEec
Q 007912 364 GLVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFG---AIVQHCKDLRRLSL 440 (585)
Q Consensus 364 ~l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~L~l 440 (585)
+...+... +...+++|++|+|+++. ++ +.+.. ..+..+++|++|+|
T Consensus 142 ~~~~L~~~---------------------L~~~~~~L~~L~Ls~n~------l~----~~~~~~l~~~L~~~~~L~~L~L 190 (372)
T 3un9_A 142 ACKDLRDL---------------------LLHDQCQITTLRLSNNP------LT----AAGVAVLMEGLAGNTSVTHLSL 190 (372)
T ss_dssp HHHHHHHH---------------------HHSTTCCCCEEECCSSC------CH----HHHHHHHHHHHHTCSSCCEEEC
T ss_pred HHHHHHHH---------------------HHhcCCccceeeCCCCC------CC----hHHHHHHHHHHhcCCCcCEEeC
Confidence 44433321 00123556666665432 22 33322 23345667777777
Q ss_pred CC-CCCHHHHHHHHh---hccccceeeccccCCCHHHHHHHHh---cCCCCCeEEeeCCCCChHHHHHHHHhc-cc---C
Q 007912 441 SG-LLTDRVFEYIGT---YAKKLEMLSVAFAGESDLGLHHVLS---GCDSLRKLEIMDCPFGDKALLANAAKL-ET---M 509 (585)
Q Consensus 441 ~~-~~~~~~~~~l~~---~~~~L~~L~l~~~~i~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~~~~l-~~---L 509 (585)
++ .+++.+...+.. .+++|+.|+|++|.|++.+...++. .+++|++|++++|.+++.++..+.... +. |
T Consensus 191 s~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L 270 (372)
T 3un9_A 191 LHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGA 270 (372)
T ss_dssp TTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------C
T ss_pred CCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccc
Confidence 76 566666665543 3457888888888888877666544 357788888888888887766544321 11 5
Q ss_pred CEEE--eecccCCHH
Q 007912 510 RSLW--MSSCSVSFE 522 (585)
Q Consensus 510 ~~L~--l~~~~i~~~ 522 (585)
+.+. +.++.++.+
T Consensus 271 ~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 271 RVVVSLTEGTAVSEY 285 (372)
T ss_dssp EEECCCC----CHHH
T ss_pred hhhHhhhcCCccCHH
Confidence 5665 556656544
No 55
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.39 E-value=1.1e-13 Score=133.82 Aligned_cols=88 Identities=11% Similarity=0.070 Sum_probs=41.7
Q ss_pred hhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHh-----cCCCCCeEEeeCCCCChHHH-HH
Q 007912 429 VQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLS-----GCDSLRKLEIMDCPFGDKAL-LA 501 (585)
Q Consensus 429 ~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~-----~~~~L~~L~l~~~~~~~~~~-~~ 501 (585)
+..+++|++|++++ .++. +......+++|+.|++++|.++..+...+.. ..+.|+.|++++|++....+ ..
T Consensus 236 ~~~l~~L~~L~L~~N~l~~--lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~ 313 (330)
T 1xku_A 236 LANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313 (330)
T ss_dssp GGGSTTCCEEECCSSCCSS--CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGG
T ss_pred ccCCCCCCEEECCCCcCcc--CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcc
Confidence 34456666666665 2221 1111123456666677666655443332211 13556677777775543221 11
Q ss_pred HHHhcccCCEEEeeccc
Q 007912 502 NAAKLETMRSLWMSSCS 518 (585)
Q Consensus 502 ~~~~l~~L~~L~l~~~~ 518 (585)
.+..+++++.+++++|+
T Consensus 314 ~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 314 TFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GGTTCCCGGGEEC----
T ss_pred ccccccceeEEEecccC
Confidence 33455666677766653
No 56
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.39 E-value=5e-15 Score=157.19 Aligned_cols=134 Identities=17% Similarity=0.097 Sum_probs=91.8
Q ss_pred CCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCC
Q 007912 106 PWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCT 185 (585)
Q Consensus 106 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 185 (585)
+++++|+|++|.++.-.-..+ ..+++|++|+|+++ .++... ...+.++++|++|++++|.+.......+. .++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f-~~l~~L~~L~Ls~N-~i~~i~-~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~----~L~ 124 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRC-EIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFS----GLS 124 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTTC-CCCEEC-TTTTTTCTTCCEEECTTCCCCEECGGGGT----TCT
T ss_pred cCCCEEEeeCCCCCCCCHHHH-hCCCCCCEEECCCC-cCCCcC-hhHhcCCCCCCEEEccCCcCCCCCHHHhc----CCC
Confidence 479999999997765322223 36789999999987 333211 12245789999999999987765444343 466
Q ss_pred cccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCCh-HHHHHHHhhCCCceEEcCccccCC
Q 007912 186 SLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPL-EKLAHLLRQAPQLVELGTGTYSAD 249 (585)
Q Consensus 186 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~ 249 (585)
+|++|+++++. +..-. ...+..+++|++|+++++.-. ...+..+..+++|++|++++....
T Consensus 125 ~L~~L~Ls~N~--l~~l~-~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 125 SLQKLVAVETN--LASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TCCEEECTTSC--CCCST-TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCEEECCCCc--CCCCC-hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 99999999773 22110 011356899999999987522 234556778999999999876544
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.38 E-value=2e-14 Score=137.83 Aligned_cols=82 Identities=16% Similarity=0.054 Sum_probs=52.4
Q ss_pred CCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCC
Q 007912 432 CKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMR 510 (585)
Q Consensus 432 ~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 510 (585)
+++|++|++++ .++..... ...+++|+.|++++|.++... .....+++|+.|++++|+++...+...+..+++|+
T Consensus 190 l~~L~~L~Ls~N~l~~l~~~--~~~l~~L~~L~L~~N~l~~l~--~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~ 265 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (317)
T ss_dssp CTTCCEEECCSSCCCEECGG--GGGGTTCSEEECTTSCCCEEC--TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHH
T ss_pred cccCCEEECCCCcCCcchhh--hcccCcccEEECcCCcccchh--hHhhcCCCCCEEEccCCCccCcCHHHHHhccccce
Confidence 56677777766 33321111 234567888888888776422 11256788888888888887556666777777777
Q ss_pred EEEeecc
Q 007912 511 SLWMSSC 517 (585)
Q Consensus 511 ~L~l~~~ 517 (585)
.|++.+|
T Consensus 266 ~l~l~~~ 272 (317)
T 3o53_A 266 TVAKQTV 272 (317)
T ss_dssp HHHHHHH
T ss_pred EEECCCc
Confidence 7776544
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.38 E-value=3.1e-14 Score=138.99 Aligned_cols=91 Identities=15% Similarity=0.202 Sum_probs=55.9
Q ss_pred hhCCCCcEEecCC-CCCHHHHHHH--HhhccccceeeccccCCCHHHHHHH---HhcCCCCCeEEeeCCCCChHHHHHHH
Q 007912 430 QHCKDLRRLSLSG-LLTDRVFEYI--GTYAKKLEMLSVAFAGESDLGLHHV---LSGCDSLRKLEIMDCPFGDKALLANA 503 (585)
Q Consensus 430 ~~~~~L~~L~l~~-~~~~~~~~~l--~~~~~~L~~L~l~~~~i~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~~ 503 (585)
..+++|+.|++++ .+++.....+ ....+.++.++++++.+++.++..+ ...+++|++|++++|.++... ..++
T Consensus 219 ~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~-~~~~ 297 (353)
T 2z80_A 219 DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVP-DGIF 297 (353)
T ss_dssp HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCC-TTTT
T ss_pred hhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccC-HHHH
Confidence 3455566666654 2222111111 1234567788888888877665543 356889999999999776322 1134
Q ss_pred HhcccCCEEEeecccCCH
Q 007912 504 AKLETMRSLWMSSCSVSF 521 (585)
Q Consensus 504 ~~l~~L~~L~l~~~~i~~ 521 (585)
..+++|+.|++++|+++.
T Consensus 298 ~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 298 DRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp TTCTTCCEEECCSSCBCC
T ss_pred hcCCCCCEEEeeCCCccC
Confidence 678899999999998643
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.38 E-value=1.4e-13 Score=134.34 Aligned_cols=259 Identities=13% Similarity=0.058 Sum_probs=136.4
Q ss_pred CCCcEEEcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHHHHHhhCC
Q 007912 157 KNLKELDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAP 236 (585)
Q Consensus 157 ~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 236 (585)
++|++|++++|.+.......+ ..+++|++|+++++ .+..... .....+++|++|+++++.-..-....+..++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~----~~l~~L~~L~L~~n--~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 124 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDL----QRCVNLQALVLTSN--GINTIEE-DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS 124 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTT----TTCTTCCEEECTTS--CCCEECT-TTTTTCTTCCEEECCSSCCSSCCHHHHTTCT
T ss_pred ccCcEEECCCCcCcccCHHHh----ccCCCCCEEECCCC--ccCccCH-hhcCCCCCCCEEECCCCcCCcCCHhHhCCCc
Confidence 578888888887765433223 34568888888866 2332111 1134567888888877642211122345556
Q ss_pred CceEEcCccccCCCCchhhhhhhhhhhcccccccccCccccCcCchhhHhhcCCCCCEEEeeccc-CCchhHHHHHhcCC
Q 007912 237 QLVELGTGTYSADLRPDIFSNLAGAFSGCKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYAT-IQSPDLIKLVSQCP 315 (585)
Q Consensus 237 ~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~~~ 315 (585)
+|++|++++..... ... ......+++|+.|++++|. +..... ..+..++
T Consensus 125 ~L~~L~L~~n~l~~--------------------------l~~---~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~ 174 (353)
T 2z80_A 125 SLTFLNLLGNPYKT--------------------------LGE---TSLFSHLTKLQILRVGNMDTFTKIQR-KDFAGLT 174 (353)
T ss_dssp TCSEEECTTCCCSS--------------------------SCS---SCSCTTCTTCCEEEEEESSSCCEECT-TTTTTCC
T ss_pred cCCEEECCCCCCcc--------------------------cCc---hhhhccCCCCcEEECCCCccccccCH-HHccCCC
Confidence 66666554332110 000 0112235667777777663 322111 1123344
Q ss_pred CCcEEecccc-cchhHHHHHHhcCCCCceEEeccCCCCCCCCCCCcchHHHHHHHhCCCCCceehhcccCCcHHHHHHHH
Q 007912 316 KLQCLWVLDY-IEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSLTEQGLVLVSEGCPKLESVLYFCRRMSNDALVTIA 394 (585)
Q Consensus 316 ~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~ 394 (585)
+|+.|+++++ +.......+ .. +++|++|.+..+.++.... ...
T Consensus 175 ~L~~L~l~~n~l~~~~~~~l-~~----------------------------------l~~L~~L~l~~n~l~~~~~-~~~ 218 (353)
T 2z80_A 175 FLEELEIDASDLQSYEPKSL-KS----------------------------------IQNVSHLILHMKQHILLLE-IFV 218 (353)
T ss_dssp EEEEEEEEETTCCEECTTTT-TT----------------------------------CSEEEEEEEECSCSTTHHH-HHH
T ss_pred CCCEEECCCCCcCccCHHHH-hc----------------------------------cccCCeecCCCCccccchh-hhh
Confidence 5555555442 111000011 12 4444444433334432221 223
Q ss_pred hhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHH---hhccccceeeccccCCC
Q 007912 395 KNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIG---TYAKKLEMLSVAFAGES 470 (585)
Q Consensus 395 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~---~~~~~L~~L~l~~~~i~ 470 (585)
..+++|+.|+++++...... ...+ ......+.++.+++.+ .+++..+..+. ..+++|+.|++++|.++
T Consensus 219 ~~~~~L~~L~L~~n~l~~~~-------~~~l-~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 219 DVTSSVECLELRDTDLDTFH-------FSEL-STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp HHTTTEEEEEEESCBCTTCC-------CC-------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred hhcccccEEECCCCcccccc-------cccc-ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 34678888888765432110 0011 1134456788888877 77777666543 35789999999999987
Q ss_pred HHHHHHHHhcCCCCCeEEeeCCCCChH
Q 007912 471 DLGLHHVLSGCDSLRKLEIMDCPFGDK 497 (585)
Q Consensus 471 ~~~~~~l~~~~~~L~~L~l~~~~~~~~ 497 (585)
...... ...+++|++|++++|+++.+
T Consensus 291 ~i~~~~-~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 291 SVPDGI-FDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCCTTT-TTTCTTCCEEECCSSCBCCC
T ss_pred ccCHHH-HhcCCCCCEEEeeCCCccCc
Confidence 443322 26789999999999976543
No 60
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.37 E-value=1.1e-12 Score=110.47 Aligned_cols=103 Identities=16% Similarity=0.284 Sum_probs=83.4
Q ss_pred CCcEEecCC-CCCHHHHHHHHhhccccceeeccccC-CCHHHHHHHHhc---CCCCCeEEeeCC-CCChHHHHHHHHhcc
Q 007912 434 DLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAG-ESDLGLHHVLSG---CDSLRKLEIMDC-PFGDKALLANAAKLE 507 (585)
Q Consensus 434 ~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~---~~~L~~L~l~~~-~~~~~~~~~~~~~l~ 507 (585)
+|++|++++ .++|.++..+ ..+++|+.|+|++|. |||.++..+... +++|++|++++| ++||.++..+ ..++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCT
T ss_pred eEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCC
Confidence 578888877 6788888777 467889999999886 899999888552 568999999999 7999998754 5789
Q ss_pred cCCEEEeeccc-CCHHH--HHHHHhhCCCcEEEE
Q 007912 508 TMRSLWMSSCS-VSFEA--CKLLGQKMPRLNVEV 538 (585)
Q Consensus 508 ~L~~L~l~~~~-i~~~~--~~~l~~~~~~l~~~~ 538 (585)
+|+.|++++|. ||+.+ ++.+.+.+|++++..
T Consensus 140 ~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V~~ 173 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELKL 173 (176)
T ss_dssp TCCEEEEESCTTCCCHHHHHHHHHHHCTTCEEEE
T ss_pred CCCEEECCCCCCCCchHHHHHHHHHHCCCcEEEe
Confidence 99999999995 88765 677888999988764
No 61
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.36 E-value=3.8e-14 Score=137.02 Aligned_cols=87 Identities=11% Similarity=0.078 Sum_probs=45.3
Q ss_pred hhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhc-----CCCCCeEEeeCCCCChHHH-HH
Q 007912 429 VQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSG-----CDSLRKLEIMDCPFGDKAL-LA 501 (585)
Q Consensus 429 ~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~-----~~~L~~L~l~~~~~~~~~~-~~ 501 (585)
+..+++|++|++++ .++. +......+++|+.|++++|.+++.+...+... .++|+.|++++|++....+ ..
T Consensus 237 ~~~l~~L~~L~L~~N~l~~--lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~ 314 (332)
T 2ft3_A 237 LSFLPTLRELHLDNNKLSR--VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA 314 (332)
T ss_dssp GGGCTTCCEEECCSSCCCB--CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGG
T ss_pred hhCCCCCCEEECCCCcCee--cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcc
Confidence 44566777777765 3321 11112345667777777777665544333111 3557777777776542211 12
Q ss_pred HHHhcccCCEEEeecc
Q 007912 502 NAAKLETMRSLWMSSC 517 (585)
Q Consensus 502 ~~~~l~~L~~L~l~~~ 517 (585)
.+..+++|+.|++++|
T Consensus 315 ~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 315 TFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GGTTBCCSTTEEC---
T ss_pred cccccchhhhhhcccc
Confidence 3456667777777666
No 62
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.35 E-value=1.4e-13 Score=133.03 Aligned_cols=64 Identities=6% Similarity=-0.075 Sum_probs=33.7
Q ss_pred hhCCCCcEEecCC-CCCHHHHHHHH-----hhccccceeeccccCCCHHHHH-HHHhcCCCCCeEEeeCCC
Q 007912 430 QHCKDLRRLSLSG-LLTDRVFEYIG-----TYAKKLEMLSVAFAGESDLGLH-HVLSGCDSLRKLEIMDCP 493 (585)
Q Consensus 430 ~~~~~L~~L~l~~-~~~~~~~~~l~-----~~~~~L~~L~l~~~~i~~~~~~-~l~~~~~~L~~L~l~~~~ 493 (585)
..+++|++|++++ .++......+. ...+.|+.|++.+|++....+. .....+++|+.+++++|+
T Consensus 260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 4556677777665 33322211111 1135688888888887543321 112557889999998873
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.30 E-value=1.1e-13 Score=132.69 Aligned_cols=124 Identities=11% Similarity=0.082 Sum_probs=84.0
Q ss_pred hCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHH
Q 007912 396 NRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGL 474 (585)
Q Consensus 396 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 474 (585)
.+++|+.|+++++.. + ......+...+++|++|++++ .++.. ... ..+++|+.|++++|.++....
T Consensus 142 ~l~~L~~L~Ls~N~l------~----~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~-~~l~~L~~L~Ls~N~l~~l~~ 208 (317)
T 3o53_A 142 CRSRVQYLDLKLNEI------D----TVNFAELAASSDTLEHLNLQYNFIYDV--KGQ-VVFAKLKTLDLSSNKLAFMGP 208 (317)
T ss_dssp GGSSEEEEECTTSCC------C----EEEGGGGGGGTTTCCEEECTTSCCCEE--ECC-CCCTTCCEEECCSSCCCEECG
T ss_pred ccCCCCEEECCCCCC------C----cccHHHHhhccCcCCEEECCCCcCccc--ccc-cccccCCEEECCCCcCCcchh
Confidence 357788888875432 2 112222345678899999987 33322 101 136889999999999876433
Q ss_pred HHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCHHHHHHHHhhCCCcEE
Q 007912 475 HHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFEACKLLGQKMPRLNV 536 (585)
Q Consensus 475 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~~~~~l~~ 536 (585)
. ...+++|++|++++|.++.. ...+..+++|+.|++++|+++......+...+|.++.
T Consensus 209 ~--~~~l~~L~~L~L~~N~l~~l--~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~ 266 (317)
T 3o53_A 209 E--FQSAAGVTWISLRNNKLVLI--EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266 (317)
T ss_dssp G--GGGGTTCSEEECTTSCCCEE--CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHH
T ss_pred h--hcccCcccEEECcCCcccch--hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceE
Confidence 3 36789999999999988742 2235678999999999999985555555556666543
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.30 E-value=7.3e-14 Score=133.59 Aligned_cols=58 Identities=14% Similarity=0.162 Sum_probs=32.3
Q ss_pred cccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCH
Q 007912 457 KKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSF 521 (585)
Q Consensus 457 ~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~ 521 (585)
++|+.|++++|.++... .. -.++|++|++++|++++.. ....+++|+.|++++|++++
T Consensus 253 ~~L~~L~Ls~N~l~~ip-~~---~~~~L~~L~Ls~N~l~~~p---~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTGLKQVP-KG---LPAKLSVLDLSYNRLDRNP---SPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSCCSSCC-SS---CCSEEEEEECCSSCCCSCC---CTTTSCEEEEEECTTCTTTC
T ss_pred CCCCEEECCCCccChhh-hh---ccCCceEEECCCCCCCCCh---hHhhCCCCCEEeccCCCCCC
Confidence 45566666666554211 00 1156777777777665442 14566777777777776653
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.26 E-value=5.6e-14 Score=134.21 Aligned_cols=64 Identities=14% Similarity=0.053 Sum_probs=38.3
Q ss_pred hhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcC-CCCCeEEeeCCCCC
Q 007912 430 QHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGC-DSLRKLEIMDCPFG 495 (585)
Q Consensus 430 ~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~-~~L~~L~l~~~~~~ 495 (585)
..+++|++|++++ .+++..... ...+++|+.|++++|.+++.....+ ..+ ++|++|++++|+++
T Consensus 196 ~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~-~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 196 NSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQEL-QHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp TTCTTCCEEECTTSCCSBCCSGG-GTTCTTCCEEECTTSCCCBCSSSSC-CCCCTTCCEEECTTCCEE
T ss_pred cCCCCCCEEECCCCccCccChhh-ccCcccCCEeECCCCCCcccCHHHH-HhhhccCCEEEccCCCee
Confidence 4456666666665 222211111 1335678888888888766544443 445 48889999988764
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.26 E-value=1.9e-11 Score=126.73 Aligned_cols=62 Identities=24% Similarity=0.258 Sum_probs=36.5
Q ss_pred CCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHH
Q 007912 432 CKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALL 500 (585)
Q Consensus 432 ~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 500 (585)
+++|+.|++++ .++. +...+++|+.|++++|.++... .. ..++++|+.|++++|+++.....
T Consensus 240 l~~L~~L~Ls~N~L~~-----lp~~~~~L~~L~Ls~N~L~~lp-~~-l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 240 PSELKELMVSGNRLTS-----LPMLPSGLLSLSVYRNQLTRLP-ES-LIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCCSCC-GG-GGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCcCcEEECCCCCCCc-----CCcccccCcEEeCCCCCCCcCC-HH-HhhccccCEEEecCCCCCCcCHH
Confidence 35566666655 2221 1113566777777777766321 12 35678888888888877765543
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.25 E-value=1.9e-13 Score=138.76 Aligned_cols=79 Identities=16% Similarity=0.049 Sum_probs=40.9
Q ss_pred CCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCC
Q 007912 432 CKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMR 510 (585)
Q Consensus 432 ~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 510 (585)
+++|+.|++++ .++..... ...+++|+.|++++|.++... .....+++|+.|++++|++....+...+..++.|+
T Consensus 190 l~~L~~L~Ls~N~l~~~~~~--~~~l~~L~~L~Ls~N~l~~lp--~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~ 265 (487)
T 3oja_A 190 FAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (487)
T ss_dssp CTTCCEEECCSSCCCEECGG--GGGGTTCSEEECTTSCCCEEC--TTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHH
T ss_pred CCCCCEEECCCCCCCCCCHh--HcCCCCccEEEecCCcCcccc--hhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCc
Confidence 45566666655 23221111 123456666666666655311 11244566777777777666444444555555555
Q ss_pred EEEe
Q 007912 511 SLWM 514 (585)
Q Consensus 511 ~L~l 514 (585)
.+.+
T Consensus 266 ~l~~ 269 (487)
T 3oja_A 266 TVAK 269 (487)
T ss_dssp HHHH
T ss_pred EEec
Confidence 5544
No 68
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.22 E-value=5e-12 Score=121.45 Aligned_cols=226 Identities=19% Similarity=0.201 Sum_probs=133.4
Q ss_pred hCCCceEEEecCCCCCCCCCCCcCCCCCcchhHHHHHHccCCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCC
Q 007912 65 RFPEVRSVELKGKPHFADFNLVPEGWGGYVYPWIRAMAGGYPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGF 144 (585)
Q Consensus 65 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 144 (585)
..++++.|+++++. +. .+|.. ...+++|++|+++++.++. +......+++|++|+++++ .+
T Consensus 79 ~~~~l~~L~L~~n~-l~---~lp~~------------l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~Ls~n-~l 139 (328)
T 4fcg_A 79 TQPGRVALELRSVP-LP---QFPDQ------------AFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARN-PL 139 (328)
T ss_dssp TSTTCCEEEEESSC-CS---SCCSC------------GGGGTTCSEEEEESSCCCC--CCSCGGGGTTCSEEEEESC-CC
T ss_pred cccceeEEEccCCC-ch---hcChh------------hhhCCCCCEEECCCCCccc--hhHHHhccCCCCEEECCCC-cc
Confidence 35789999998754 21 12211 2347899999999987762 2222246789999999987 34
Q ss_pred CHHHHHHHHhcCCCCcEEEcccCCCCCcccccccc-----cCCCCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEe
Q 007912 145 STHGLAAIAADCKNLKELDLWESDVEDPSGNWLSK-----FPDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRL 219 (585)
Q Consensus 145 ~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~-----~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l 219 (585)
+ .+...+..+++|++|++++|.........+.. ....+++|++|+++++. +. .+......+++|++|++
T Consensus 140 ~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~--l~--~lp~~l~~l~~L~~L~L 213 (328)
T 4fcg_A 140 R--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG--IR--SLPASIANLQNLKSLKI 213 (328)
T ss_dssp C--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC--CC--CCCGGGGGCTTCCEEEE
T ss_pred c--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC--cC--cchHhhcCCCCCCEEEc
Confidence 3 23333458899999999997654433222221 11236799999999773 33 12222466889999999
Q ss_pred CCCCChHHHHHHHhhCCCceEEcCccccCCCCchhhhhhhhhhhcccccccccCccccCcCchhhHhhcCCCCCEEEeec
Q 007912 220 NRAVPLEKLAHLLRQAPQLVELGTGTYSADLRPDIFSNLAGAFSGCKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSY 299 (585)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 299 (585)
+++. +..++..+..+++|+.|+++++.... .++.....+++|+.|++++
T Consensus 214 ~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~------------------------------~~p~~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 214 RNSP-LSALGPAIHHLPKLEELDLRGCTALR------------------------------NYPPIFGGRAPLKRLILKD 262 (328)
T ss_dssp ESSC-CCCCCGGGGGCTTCCEEECTTCTTCC------------------------------BCCCCTTCCCCCCEEECTT
T ss_pred cCCC-CCcCchhhccCCCCCEEECcCCcchh------------------------------hhHHHhcCCCCCCEEECCC
Confidence 8875 33344446677788888776543321 1111223466777777777
Q ss_pred ccCCchhHHHHHhcCCCCcEEecccccchhHHHHHHhcCCCCceEEec
Q 007912 300 ATIQSPDLIKLVSQCPKLQCLWVLDYIEDSGLEALAATCKDLRELRVF 347 (585)
Q Consensus 300 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~l~ 347 (585)
|.+..... ..+..+++|+.|+++++-....+......+++|+.+.+.
T Consensus 263 n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 263 CSNLLTLP-LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CTTCCBCC-TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCchhhcc-hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 65222111 113466777777777641111111222356677777765
No 69
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.22 E-value=8.6e-14 Score=134.55 Aligned_cols=288 Identities=10% Similarity=-0.017 Sum_probs=142.0
Q ss_pred CCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCCc
Q 007912 107 WLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCTS 186 (585)
Q Consensus 107 ~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~ 186 (585)
+++.++++++.++.... ...++|+.|+++++. ++.... ..+..+++|++|++++|.+.......+ ..+++
T Consensus 34 ~l~~l~~~~~~l~~ip~----~~~~~l~~L~l~~n~-i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~ 103 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPK----EISPDTTLLDLQNND-ISELRK-DDFKGLQHLYALVLVNNKISKIHEKAF----SPLRK 103 (332)
T ss_dssp ETTEEECCSSCCSSCCS----CCCTTCCEEECCSSC-CCEECT-TTTTTCTTCCEEECCSSCCCEECGGGS----TTCTT
T ss_pred cCCEEECCCCCccccCC----CCCCCCeEEECCCCc-CCccCH-hHhhCCCCCcEEECCCCccCccCHhHh----hCcCC
Confidence 57888887765542110 123578888888763 332111 123477888888888887665433333 34568
Q ss_pred ccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHHHHHhhCCCceEEcCccccCCCCchhhhhhhhhhhccc
Q 007912 187 LVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVELGTGTYSADLRPDIFSNLAGAFSGCK 266 (585)
Q Consensus 187 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~ 266 (585)
|++|+++++. +..- .. ...++|++|+++++.-.......+.
T Consensus 104 L~~L~L~~n~--l~~l--~~--~~~~~L~~L~l~~n~i~~~~~~~~~--------------------------------- 144 (332)
T 2ft3_A 104 LQKLYISKNH--LVEI--PP--NLPSSLVELRIHDNRIRKVPKGVFS--------------------------------- 144 (332)
T ss_dssp CCEEECCSSC--CCSC--CS--SCCTTCCEEECCSSCCCCCCSGGGS---------------------------------
T ss_pred CCEEECCCCc--CCcc--Cc--cccccCCEEECCCCccCccCHhHhC---------------------------------
Confidence 8888887662 2210 00 0125677777766531100001122
Q ss_pred ccccccCccccCcCchhhHhhcCCCCCEEEeecccCCchhH-HHHHhcCCCCcEEecccc-cchhHHHHHHhcCCCCceE
Q 007912 267 ELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYATIQSPDL-IKLVSQCPKLQCLWVLDY-IEDSGLEALAATCKDLREL 344 (585)
Q Consensus 267 ~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l-~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L 344 (585)
.+++|+.|++++|.+...+. ...+..+ +|+.|+++++ +..- .. ...++|++|
T Consensus 145 ---------------------~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l--~~--~~~~~L~~L 198 (332)
T 2ft3_A 145 ---------------------GLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI--PK--DLPETLNEL 198 (332)
T ss_dssp ---------------------SCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC--CS--SSCSSCSCC
T ss_pred ---------------------CCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc--Cc--cccCCCCEE
Confidence 24445555555444321110 0111111 4444444442 1110 00 012455666
Q ss_pred EeccCCCCCCCCCCCcchHHHHHHHhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhh
Q 007912 345 RVFPSEPFGDEPNVSLTEQGLVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVG 424 (585)
Q Consensus 345 ~l~~~~~~~~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~ 424 (585)
++++. .++...... ...+++|+.|++..+.++......+ ..+++|+.|+++++... .+. .
T Consensus 199 ~l~~n---------~i~~~~~~~-l~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~---~lp-----~- 258 (332)
T 2ft3_A 199 HLDHN---------KIQAIELED-LLRYSKLYRLGLGHNQIRMIENGSL-SFLPTLRELHLDNNKLS---RVP-----A- 258 (332)
T ss_dssp BCCSS---------CCCCCCTTS-STTCTTCSCCBCCSSCCCCCCTTGG-GGCTTCCEEECCSSCCC---BCC-----T-
T ss_pred ECCCC---------cCCccCHHH-hcCCCCCCEEECCCCcCCcCChhHh-hCCCCCCEEECCCCcCe---ecC-----h-
Confidence 55521 222111111 1225666666554444443221112 35788888888765431 111 1
Q ss_pred HHHHhhhCCCCcEEecCC-CCCHHHHHHHHhh-----ccccceeeccccCCCHHH--HHHHHhcCCCCCeEEeeCCC
Q 007912 425 FGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTY-----AKKLEMLSVAFAGESDLG--LHHVLSGCDSLRKLEIMDCP 493 (585)
Q Consensus 425 ~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~-----~~~L~~L~l~~~~i~~~~--~~~l~~~~~~L~~L~l~~~~ 493 (585)
.+..+++|+.|++++ .++......+... .+.|+.|++.+|+++... ... ...+++|+.|++++|+
T Consensus 259 ---~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~-~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 259 ---GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT-FRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ---TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGG-GTTBCCSTTEEC----
T ss_pred ---hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccc-ccccchhhhhhccccc
Confidence 146788899999987 4444333222221 467899999999876322 222 3668999999999873
No 70
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.22 E-value=9.7e-12 Score=118.71 Aligned_cols=184 Identities=16% Similarity=0.154 Sum_probs=88.9
Q ss_pred cCCCCCEEEeecccCCchh--HH-HHHhcCCCCcEEecccc-cchhHHHHHHhcCCCCceEEeccCCCCCCCCCCCcchH
Q 007912 288 VCSGLTTLNLSYATIQSPD--LI-KLVSQCPKLQCLWVLDY-IEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSLTEQ 363 (585)
Q Consensus 288 ~~~~L~~L~L~~~~~~~~~--l~-~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 363 (585)
.+++|++|++++|.+.... +. .-...+++|+.|+++++ +....... ...+++|++|++++ +.-.+..
T Consensus 115 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~--------N~l~~~~ 185 (310)
T 4glp_A 115 TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQ-VRAFPALTSLDLSD--------NPGLGER 185 (310)
T ss_dssp CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTS-CCCCTTCCEEECCS--------CTTCHHH
T ss_pred cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHH-hccCCCCCEEECCC--------CCCccch
Confidence 3677778888877754311 10 11225667777777664 22111111 12566777777762 2222222
Q ss_pred HHHHH--HhCCCCCceehhcccCCcH--HHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEe
Q 007912 364 GLVLV--SEGCPKLESVLYFCRRMSN--DALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLS 439 (585)
Q Consensus 364 ~l~~l--~~~~~~L~~L~~~~~~~~~--~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 439 (585)
++... ...+++|++|.+..+.++. .....+...+++|++|+++++..
T Consensus 186 ~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l----------------------------- 236 (310)
T 4glp_A 186 GLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSL----------------------------- 236 (310)
T ss_dssp HHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCC-----------------------------
T ss_pred hhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCC-----------------------------
Confidence 22111 1235555555444444441 11222233455566665554332
Q ss_pred cCCCCCHHHHHHHHh--hccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecc
Q 007912 440 LSGLLTDRVFEYIGT--YAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSC 517 (585)
Q Consensus 440 l~~~~~~~~~~~l~~--~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 517 (585)
++.....+.. .+++|++|++++|.++... . .-.++|++|++++|+++... ....+++|+.|++++|
T Consensus 237 -----~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp-~---~~~~~L~~L~Ls~N~l~~~~---~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 237 -----RATVNPSAPRCMWSSALNSLNLSFAGLEQVP-K---GLPAKLRVLDLSSNRLNRAP---QPDELPEVDNLTLDGN 304 (310)
T ss_dssp -----CCCCCSCCSSCCCCTTCCCEECCSSCCCSCC-S---CCCSCCSCEECCSCCCCSCC---CTTSCCCCSCEECSST
T ss_pred -----CccchhhHHhccCcCcCCEEECCCCCCCchh-h---hhcCCCCEEECCCCcCCCCc---hhhhCCCccEEECcCC
Confidence 1110000001 1245666666666655211 1 11367777777777666432 2356677777777777
Q ss_pred cCCH
Q 007912 518 SVSF 521 (585)
Q Consensus 518 ~i~~ 521 (585)
++++
T Consensus 305 ~l~~ 308 (310)
T 4glp_A 305 PFLV 308 (310)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 7654
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.22 E-value=5.7e-13 Score=125.72 Aligned_cols=205 Identities=13% Similarity=0.080 Sum_probs=129.1
Q ss_pred CCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc-cchhHHHHHHhcCCCCceEEeccCCCCCCCCCCCcchHHHHH
Q 007912 289 CSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY-IEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSLTEQGLVL 367 (585)
Q Consensus 289 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~~ 367 (585)
.++|++|+++++.+..... ..+..+++|+.|+++++ +.......+ ..+++|++|++++. ..++.....
T Consensus 31 ~~~l~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n--------~~l~~~~~~- 99 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPA-ASFRACRNLTILWLHSNVLARIDAAAF-TGLALLEQLDLSDN--------AQLRSVDPA- 99 (285)
T ss_dssp CTTCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSC--------TTCCCCCTT-
T ss_pred CCCceEEEeeCCcCCccCH-HHcccCCCCCEEECCCCccceeCHhhc-CCccCCCEEeCCCC--------CCccccCHH-
Confidence 4578888888877544322 12356778888888764 322111122 25778888888742 112221111
Q ss_pred HHhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCH
Q 007912 368 VSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTD 446 (585)
Q Consensus 368 l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~ 446 (585)
....+++|++|.+..+.++..... ....+++|++|+++++.... +. ...+..+++|++|++++ .++.
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~---~~--------~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPG-LFRGLAALQYLYLQDNALQA---LP--------DDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECCSSCCCC---CC--------TTTTTTCTTCCEEECCSSCCCE
T ss_pred HhcCCcCCCEEECCCCcCCEECHh-HhhCCcCCCEEECCCCcccc---cC--------HhHhccCCCccEEECCCCcccc
Confidence 123377888886555555432111 12357899999998754321 11 11245678999999987 4443
Q ss_pred HHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccC
Q 007912 447 RVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSV 519 (585)
Q Consensus 447 ~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 519 (585)
..... ...+++|+.|++++|.+++.....+ ..+++|++|++++|.+++... ..+..+++|+.|++++|++
T Consensus 168 ~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 168 VPERA-FRGLHSLDRLLLHQNRVAHVHPHAF-RDLGRLMTLYLFANNLSALPT-EALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp ECTTT-TTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCSCCCH-HHHTTCTTCCEEECCSSCE
T ss_pred cCHHH-hcCccccCEEECCCCcccccCHhHc-cCcccccEeeCCCCcCCcCCH-HHcccCcccCEEeccCCCc
Confidence 22111 2346889999999999877655554 678999999999998876432 3567899999999999975
No 72
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.22 E-value=5.8e-13 Score=134.54 Aligned_cols=55 Identities=11% Similarity=0.105 Sum_probs=30.1
Q ss_pred CcEEEcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCC
Q 007912 159 LKELDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAV 223 (585)
Q Consensus 159 L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 223 (585)
...++.++..+...+.. + .+++++|+++++ .+..... ..+..+++|+.|+++++.
T Consensus 56 ~~~v~c~~~~l~~iP~~-~------~~~l~~L~L~~n--~i~~~~~-~~~~~l~~L~~L~Ls~n~ 110 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQG-I------PSNTRYLNLMEN--NIQMIQA-DTFRHLHHLEVLQLGRNS 110 (452)
T ss_dssp SCEEECCSSCCSSCCSC-C------CTTCSEEECCSS--CCCEECT-TTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCC-C------CCCccEEECcCC--cCceECH-HHcCCCCCCCEEECCCCc
Confidence 45666555554432211 1 247899999876 2332111 113457888888887764
No 73
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.20 E-value=4.5e-11 Score=100.56 Aligned_cols=102 Identities=15% Similarity=0.223 Sum_probs=85.0
Q ss_pred CCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC--CCCHHHHHHHHhh---ccccceeeccccC-CCH
Q 007912 398 PSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG--LLTDRVFEYIGTY---AKKLEMLSVAFAG-ESD 471 (585)
Q Consensus 398 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~~~~~l~~~---~~~L~~L~l~~~~-i~~ 471 (585)
..|+.|+++++ . ++ +.|+..+ ..|++|++|+|++ .++|.++..+... +++|++|+|++|. |||
T Consensus 61 ~~L~~LDLs~~-----~-It----d~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDS-----C-IM----SIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESC-----C-CC----GGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCC-----C-cc----HHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 46888888764 2 66 7888766 6899999999988 6999999999873 6789999999997 999
Q ss_pred HHHHHHHhcCCCCCeEEeeCC-CCChHH--HHHHHHhcccCCE
Q 007912 472 LGLHHVLSGCDSLRKLEIMDC-PFGDKA--LLANAAKLETMRS 511 (585)
Q Consensus 472 ~~~~~l~~~~~~L~~L~l~~~-~~~~~~--~~~~~~~l~~L~~ 511 (585)
.++..+ ..+++|++|++++| .+++.+ ...+...+|+++.
T Consensus 130 ~Gl~~L-~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 130 KGIIAL-HHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp HHHHHG-GGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred HHHHHH-hcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 999998 67999999999999 799876 4445578888754
No 74
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.19 E-value=7.4e-13 Score=133.26 Aligned_cols=56 Identities=13% Similarity=0.150 Sum_probs=30.5
Q ss_pred CCcEEEcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCC
Q 007912 158 NLKELDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAV 223 (585)
Q Consensus 158 ~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 223 (585)
..+.++..+..+...+.. + .++++.|+++++. +..... ..+..+++|++|+++++.
T Consensus 44 ~~~~v~c~~~~l~~iP~~-~------~~~l~~L~L~~n~--i~~~~~-~~~~~l~~L~~L~Ls~n~ 99 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDG-I------STNTRLLNLHENQ--IQIIKV-NSFKHLRHLEILQLSRNH 99 (440)
T ss_dssp TSCEEECCSCCCSSCCSC-C------CTTCSEEECCSCC--CCEECT-TTTSSCSSCCEEECCSSC
T ss_pred CCCEEEeCCCCcCcCCCC-C------CCCCcEEEccCCc--CCeeCH-HHhhCCCCCCEEECCCCc
Confidence 345666555554432211 1 2478889988762 322111 113456788888887764
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.19 E-value=1e-11 Score=118.19 Aligned_cols=190 Identities=15% Similarity=0.131 Sum_probs=123.9
Q ss_pred CCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc-cchhHHHHHHhcCCCCceEEeccCCCCCCCCCCCcchHHHHH
Q 007912 289 CSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY-IEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSLTEQGLVL 367 (585)
Q Consensus 289 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~~ 367 (585)
+++|++|++++|.+.... -+..+++|+.|+++++ +.+... ...+++|++|+++++ .++...
T Consensus 40 l~~L~~L~l~~~~i~~l~---~~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n---------~l~~~~--- 101 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE---GVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGN---------PLKNVS--- 101 (308)
T ss_dssp HHTCCEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSC---------CCSCCG---
T ss_pred cCCcCEEEeeCCCccCch---hhhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCC---------cCCCch---
Confidence 567777777777643321 1346677777777764 322111 236777777777742 233221
Q ss_pred HHhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCH
Q 007912 368 VSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTD 446 (585)
Q Consensus 368 l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~ 446 (585)
....+++|++|.+..+.++... . ...+++|+.|+++++... .+. . +..+++|+.|++++ .+++
T Consensus 102 ~~~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~---~~~------~----l~~l~~L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 102 AIAGLQSIKTLDLTSTQITDVT--P-LAGLSNLQVLYLDLNQIT---NIS------P----LAGLTNLQYLSIGNAQVSD 165 (308)
T ss_dssp GGTTCTTCCEEECTTSCCCCCG--G-GTTCTTCCEEECCSSCCC---CCG------G----GGGCTTCCEEECCSSCCCC
T ss_pred hhcCCCCCCEEECCCCCCCCch--h-hcCCCCCCEEECCCCccC---cCc------c----ccCCCCccEEEccCCcCCC
Confidence 1234677777765555555422 2 345788999998765431 111 1 56788999999987 4443
Q ss_pred HHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCH
Q 007912 447 RVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSF 521 (585)
Q Consensus 447 ~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~ 521 (585)
... ...+++|+.|++++|.+++... ...+++|++|++++|.+++.. .+..+++|+.|++++|+++.
T Consensus 166 ~~~---l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 166 LTP---LANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CGG---GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEEEEEC
T ss_pred Chh---hcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCCeeec
Confidence 222 3457889999999999876543 377899999999999887655 25789999999999998754
No 76
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.18 E-value=1.6e-10 Score=111.29 Aligned_cols=171 Identities=17% Similarity=0.173 Sum_probs=106.9
Q ss_pred HHHHHhcCCCCceEEeccCCCCCCCCCCCcchHHHHHHHhCCCCCceehhcccCCcHHHHHHHHh-hCCCCceeeeeecC
Q 007912 331 LEALAATCKDLRELRVFPSEPFGDEPNVSLTEQGLVLVSEGCPKLESVLYFCRRMSNDALVTIAK-NRPSMIRFRLCIID 409 (585)
Q Consensus 331 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~-~~~~L~~L~L~~~~ 409 (585)
+..+...+|+|+.|.+.+ +..+.-.. . ..++|++|.+.+..+++..+..++. .+|+|+.|+|....
T Consensus 164 L~~ll~~~P~L~~L~L~g--------~~~l~l~~----~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~ 230 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKG--------TNNLSIGK----K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGV 230 (362)
T ss_dssp CHHHHHTCTTCCEEEEEC--------CBTCBCCS----C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBC
T ss_pred HHHHHhcCCCCcEEEEeC--------CCCceecc----c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccc
Confidence 334455677888888873 21111111 1 2677777765566677777777764 47888888875321
Q ss_pred CCCCCCCCCCcchhhHHHHhhhCCCCcEEecCCCCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHh--cCCCCCeE
Q 007912 410 PQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLS--GCDSLRKL 487 (585)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~--~~~~L~~L 487 (585)
.. ... +.++..+... +. ...+|+|+.|++.+|.+++.+...++. .+++|++|
T Consensus 231 ~~---~~~----~~~~~~l~~~--------l~-----------~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~L 284 (362)
T 2ra8_A 231 ED---YGF----DGDMNVFRPL--------FS-----------KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETM 284 (362)
T ss_dssp GG---GTC----CSCGGGTGGG--------SC-----------TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEE
T ss_pred cc---ccc----chhHHHHHHH--------Hh-----------cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEE
Confidence 00 000 0001000000 00 013567888888888887766666544 47889999
Q ss_pred EeeCCCCChHHHHHHH---HhcccCCEEEeecccCCHHHHHHHHhhCCCcEEEEecC
Q 007912 488 EIMDCPFGDKALLANA---AKLETMRSLWMSSCSVSFEACKLLGQKMPRLNVEVIDE 541 (585)
Q Consensus 488 ~l~~~~~~~~~~~~~~---~~l~~L~~L~l~~~~i~~~~~~~l~~~~~~l~~~~~~~ 541 (585)
+++.|.+++.+...+. ..+++|+.|++++|.|++++++.+++.+ .+.+...++
T Consensus 285 dLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~ 340 (362)
T 2ra8_A 285 DISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDS 340 (362)
T ss_dssp ECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSB
T ss_pred ECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCC
Confidence 9998899888766555 5678999999999999999999998766 555544433
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.16 E-value=5.5e-13 Score=127.44 Aligned_cols=109 Identities=11% Similarity=0.031 Sum_probs=64.0
Q ss_pred hhCCCCcEEecCC-CCCH--HHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhc
Q 007912 430 QHCKDLRRLSLSG-LLTD--RVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKL 506 (585)
Q Consensus 430 ~~~~~L~~L~l~~-~~~~--~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l 506 (585)
..+++|++|++++ .++. .....+...+++|+.|++++|.+++.........+++|++|++++|.++... ..+ .
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip--~~~--~ 273 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP--KGL--P 273 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCC--SSC--C
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhh--hhc--c
Confidence 4566777777766 4442 2223334455678888888777765431111234677888888888766211 111 1
Q ss_pred ccCCEEEeecccCCHHHHHHHHhhCCCcEEEEecCCCCC
Q 007912 507 ETMRSLWMSSCSVSFEACKLLGQKMPRLNVEVIDESGPP 545 (585)
Q Consensus 507 ~~L~~L~l~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~ 545 (585)
++|+.|++++|+++.. .. ...+|.++...+.+++..
T Consensus 274 ~~L~~L~Ls~N~l~~~--p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN--PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp SEEEEEECCSSCCCSC--CC-TTTSCEEEEEECTTCTTT
T ss_pred CCceEEECCCCCCCCC--hh-HhhCCCCCEEeccCCCCC
Confidence 5788888888877554 11 245677777777666443
No 78
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.16 E-value=5.1e-13 Score=127.54 Aligned_cols=129 Identities=18% Similarity=0.087 Sum_probs=54.4
Q ss_pred CCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHH--HHHHHhcCCCCcEEEcccCCCCCcccccccccCCC
Q 007912 106 PWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHG--LAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDT 183 (585)
Q Consensus 106 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~--l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 183 (585)
++|++|+++++.++..... +...+++|++|+++++ .++..+ ...+ ..+++|++|++++|.+... ......
T Consensus 28 ~~l~~L~L~~n~l~~i~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l-----~~~~~~ 99 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHG-VFDKLTQLTKLSLSSN-GLSFKGCCSQSD-FGTTSLKYLDLSFNGVITM-----SSNFLG 99 (306)
T ss_dssp TTCCEEECCSSCCCCCCTT-TTTTCTTCSEEECCSS-CCCEEEEEEHHH-HSCSCCCEEECCSCSEEEE-----EEEEET
T ss_pred CCCCEEECCCCccCccCHh-HhhccccCCEEECCCC-ccCcccCccccc-ccccccCEEECCCCccccC-----hhhcCC
Confidence 3555666655544421111 1123455666666554 222110 0111 1456666666666654321 111223
Q ss_pred CCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHHHHHhhCCCceEEcCc
Q 007912 184 CTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVELGTG 244 (585)
Q Consensus 184 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 244 (585)
+++|++|+++++. +...........+++|++|+++++.-....+..+..+++|+.|+++
T Consensus 100 l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 100 LEQLEHLDFQHSN--LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp CTTCCEEECTTSE--EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred CCCCCEEECCCCc--ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence 4466666665441 1111000112345566666665554222222233444555555553
No 79
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.15 E-value=2.4e-13 Score=129.85 Aligned_cols=85 Identities=19% Similarity=0.135 Sum_probs=48.6
Q ss_pred CCCcEEeecccCCCCH-HHHHHHHhcCCCCcEEEccc-CCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHH
Q 007912 131 KNFKVLVLSSCEGFST-HGLAAIAADCKNLKELDLWE-SDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLV 208 (585)
Q Consensus 131 ~~L~~L~L~~~~~~~~-~~l~~l~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~ 208 (585)
.++++|+++++. ++. ..+...+..+++|++|++++ +.+.......+. .+++|++|+++++. +... +...+
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~----~l~~L~~L~Ls~n~--l~~~-~p~~~ 121 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA----KLTQLHYLYITHTN--VSGA-IPDFL 121 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG----GCTTCSEEEEEEEC--CEEE-CCGGG
T ss_pred ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHh----cCCCCCEEECcCCe--eCCc-CCHHH
Confidence 578888888763 321 01122334778888888884 665543333333 35588888887663 2211 11123
Q ss_pred HhCCCCceEEeCCCC
Q 007912 209 VRCPNLRTLRLNRAV 223 (585)
Q Consensus 209 ~~~~~L~~L~l~~~~ 223 (585)
..+++|++|+++++.
T Consensus 122 ~~l~~L~~L~Ls~N~ 136 (313)
T 1ogq_A 122 SQIKTLVTLDFSYNA 136 (313)
T ss_dssp GGCTTCCEEECCSSE
T ss_pred hCCCCCCEEeCCCCc
Confidence 456777777777654
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.15 E-value=3.2e-12 Score=129.83 Aligned_cols=209 Identities=11% Similarity=0.072 Sum_probs=136.2
Q ss_pred hcCCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc-cchhHHHHHHhcCCCCceEEeccCCCCCCCCCCCcchHHH
Q 007912 287 SVCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY-IEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSLTEQGL 365 (585)
Q Consensus 287 ~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~l 365 (585)
..+++|+.|+|++|.+..... +..+++|+.|+++++ ++... ..++|+.|+++++ .++...
T Consensus 55 ~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~------~~~~L~~L~L~~N---------~l~~~~- 115 (487)
T 3oja_A 55 APFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL------VGPSIETLHAANN---------NISRVS- 115 (487)
T ss_dssp TTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEE------ECTTCCEEECCSS---------CCCCEE-
T ss_pred hCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCC------CCCCcCEEECcCC---------cCCCCC-
Confidence 457888888888887543221 557788888888875 32211 3478888888742 332221
Q ss_pred HHHHhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CC
Q 007912 366 VLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LL 444 (585)
Q Consensus 366 ~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~ 444 (585)
...+++|+.|.+..+.++...-..+ ..+++|+.|+++++.. + ......+...+++|+.|++++ .+
T Consensus 116 ---~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l------~----~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 116 ---CSRGQGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLNEI------D----TVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ---ECCCSSCEEEECCSSCCCSGGGBCG-GGGSSEEEEECTTSCC------C----EEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ---ccccCCCCEEECCCCCCCCCCchhh-cCCCCCCEEECCCCCC------C----CcChHHHhhhCCcccEEecCCCcc
Confidence 1236788888766666654322122 3478999999976533 2 112223345789999999988 44
Q ss_pred CHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCHHHH
Q 007912 445 TDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFEAC 524 (585)
Q Consensus 445 ~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~ 524 (585)
++. ... ..+++|+.|++++|.++..... ...+++|+.|++++|.++. +...+..+++|+.|++++|.++...+
T Consensus 182 ~~~--~~~-~~l~~L~~L~Ls~N~l~~~~~~--~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 182 YDV--KGQ-VVFAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp CEE--ECC-CCCTTCCEEECCSSCCCEECGG--GGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred ccc--ccc-ccCCCCCEEECCCCCCCCCCHh--HcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCcCcch
Confidence 332 111 1378899999999998765433 3678999999999998875 22235677899999999999986555
Q ss_pred HHHHhhCCCcE
Q 007912 525 KLLGQKMPRLN 535 (585)
Q Consensus 525 ~~l~~~~~~l~ 535 (585)
......++.+.
T Consensus 255 ~~~~~~l~~L~ 265 (487)
T 3oja_A 255 RDFFSKNQRVQ 265 (487)
T ss_dssp HHHHTTCHHHH
T ss_pred HHHHHhCCCCc
Confidence 55444555543
No 81
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.15 E-value=2.3e-12 Score=123.89 Aligned_cols=223 Identities=16% Similarity=0.086 Sum_probs=129.8
Q ss_pred cCCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCC
Q 007912 104 GYPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDT 183 (585)
Q Consensus 104 ~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 183 (585)
..++++.|+++++.++. +..-...+++|++|+++++. ++ .+...+..+++|++|++++|.+... +.....
T Consensus 79 ~~~~l~~L~L~~n~l~~--lp~~l~~l~~L~~L~L~~n~-l~--~lp~~~~~l~~L~~L~Ls~n~l~~l-----p~~l~~ 148 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQ--FPDQAFRLSHLQHMTIDAAG-LM--ELPDTMQQFAGLETLTLARNPLRAL-----PASIAS 148 (328)
T ss_dssp TSTTCCEEEEESSCCSS--CCSCGGGGTTCSEEEEESSC-CC--CCCSCGGGGTTCSEEEEESCCCCCC-----CGGGGG
T ss_pred cccceeEEEccCCCchh--cChhhhhCCCCCEEECCCCC-cc--chhHHHhccCCCCEEECCCCccccC-----cHHHhc
Confidence 35789999999887662 22112246889999998763 33 2223234778899999998877632 222334
Q ss_pred CCcccEEEeccccC-cCCHHHH-----HHHHHhCCCCceEEeCCCCChHHHHHHHhhCCCceEEcCccccCCCCchhhhh
Q 007912 184 CTSLVSLNIACLGS-EVSFSAL-----ERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVELGTGTYSADLRPDIFSN 257 (585)
Q Consensus 184 ~~~L~~L~l~~~~~-~~~~~~l-----~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 257 (585)
+++|++|+++++.. ..-+..+ ......+++|++|+++++. +..++..+..+++|++|+++++...
T Consensus 149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~-------- 219 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLS-------- 219 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCC--------
T ss_pred CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCC--------
Confidence 66888998886520 0000000 0001236777777777664 2233444555666666665443221
Q ss_pred hhhhhhcccccccccCccccCcCchhhHhhcCCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc-cchhHHHHHHh
Q 007912 258 LAGAFSGCKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY-IEDSGLEALAA 336 (585)
Q Consensus 258 l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~ 336 (585)
.++.....+++|+.|++++|.+.... ...+..+++|+.|+++++ .... +.....
T Consensus 220 -----------------------~l~~~l~~l~~L~~L~Ls~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~-~p~~~~ 274 (328)
T 4fcg_A 220 -----------------------ALGPAIHHLPKLEELDLRGCTALRNY-PPIFGGRAPLKRLILKDCSNLLT-LPLDIH 274 (328)
T ss_dssp -----------------------CCCGGGGGCTTCCEEECTTCTTCCBC-CCCTTCCCCCCEEECTTCTTCCB-CCTTGG
T ss_pred -----------------------cCchhhccCCCCCEEECcCCcchhhh-HHHhcCCCCCCEEECCCCCchhh-cchhhh
Confidence 11222345899999999998743322 123457899999999985 2221 111124
Q ss_pred cCCCCceEEeccCCCCCCCCCCCcchHHHHHHHhCCCCCceehh
Q 007912 337 TCKDLRELRVFPSEPFGDEPNVSLTEQGLVLVSEGCPKLESVLY 380 (585)
Q Consensus 337 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~~l~~~~~~L~~L~~ 380 (585)
.+++|+.|+++++ ...+.. ......+++|+.+..
T Consensus 275 ~l~~L~~L~L~~n--------~~~~~i--P~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 275 RLTQLEKLDLRGC--------VNLSRL--PSLIAQLPANCIILV 308 (328)
T ss_dssp GCTTCCEEECTTC--------TTCCCC--CGGGGGSCTTCEEEC
T ss_pred cCCCCCEEeCCCC--------Cchhhc--cHHHhhccCceEEeC
Confidence 7899999999943 332211 112234888888843
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.12 E-value=2.2e-12 Score=123.13 Aligned_cols=133 Identities=13% Similarity=0.099 Sum_probs=85.8
Q ss_pred hCCCCceeeeeecCCCCCCCCCCCcchhhHHH--HhhhCCCCcEEecCC-CCCH--HHHHHHHhhccccceeeccccCCC
Q 007912 396 NRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGA--IVQHCKDLRRLSLSG-LLTD--RVFEYIGTYAKKLEMLSVAFAGES 470 (585)
Q Consensus 396 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~~L~l~~-~~~~--~~~~~l~~~~~~L~~L~l~~~~i~ 470 (585)
.+++|++|+++++.. .. ..++.. ....+++|++|++++ .++. .....+...+++|++|++++|.++
T Consensus 167 ~l~~L~~L~Ls~N~l-----~~----~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~ 237 (310)
T 4glp_A 167 AFPALTSLDLSDNPG-----LG----ERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLR 237 (310)
T ss_dssp CCTTCCEEECCSCTT-----CH----HHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCC
T ss_pred cCCCCCEEECCCCCC-----cc----chhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCC
Confidence 356777777765422 11 111211 124677888888887 4442 222234456789999999999987
Q ss_pred HHHHHHHHhc---CCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCHHHHHHHHhhCCCcEEEEecCCCCC
Q 007912 471 DLGLHHVLSG---CDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFEACKLLGQKMPRLNVEVIDESGPP 545 (585)
Q Consensus 471 ~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~ 545 (585)
+.....+ .. +++|++|++++|.++... . .-.++|+.|++++|+++.... ...+|.++...+..++..
T Consensus 238 ~~~p~~~-~~~~~~~~L~~L~Ls~N~l~~lp--~--~~~~~L~~L~Ls~N~l~~~~~---~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 238 ATVNPSA-PRCMWSSALNSLNLSFAGLEQVP--K--GLPAKLRVLDLSSNRLNRAPQ---PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCCCSCC-SSCCCCTTCCCEECCSSCCCSCC--S--CCCSCCSCEECCSCCCCSCCC---TTSCCCCSCEECSSTTTS
T ss_pred ccchhhH-HhccCcCcCCEEECCCCCCCchh--h--hhcCCCCEEECCCCcCCCCch---hhhCCCccEEECcCCCCC
Confidence 6532222 23 379999999999887321 1 113799999999999875211 256788888888777554
No 83
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.11 E-value=5.8e-12 Score=127.18 Aligned_cols=133 Identities=15% Similarity=0.128 Sum_probs=82.8
Q ss_pred CCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCC
Q 007912 106 PWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCT 185 (585)
Q Consensus 106 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 185 (585)
++++.|+|+++.++......+ ..+++|++|+|+++ .++.... ..+..+++|++|++++|.+.......+ ..++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~ 147 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTF-RHLHHLEVLQLGRN-SIRQIEV-GAFNGLASLNTLELFDNWLTVIPSGAF----EYLS 147 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTT-TTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSCCSBCCTTTS----SSCT
T ss_pred CCccEEECcCCcCceECHHHc-CCCCCCCEEECCCC-ccCCcCh-hhccCcccCCEEECCCCcCCccChhhh----cccC
Confidence 578999998887665322223 25688999999876 3332211 223477899999999888765443333 3466
Q ss_pred cccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHHH-HHhhCCCceEEcCccccC
Q 007912 186 SLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAH-LLRQAPQLVELGTGTYSA 248 (585)
Q Consensus 186 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~ 248 (585)
+|++|+++++. +.... ......+++|+.|+++++..+..+.. .+..+++|+.|+++++..
T Consensus 148 ~L~~L~L~~N~--l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 148 KLRELWLRNNP--IESIP-SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp TCCEEECCSCC--CCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCCEEECCCCC--cceeC-HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence 89999998763 32111 11234678888998887654443332 355667777777765443
No 84
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.10 E-value=5.5e-12 Score=126.89 Aligned_cols=132 Identities=17% Similarity=0.167 Sum_probs=77.7
Q ss_pred CCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCC
Q 007912 106 PWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCT 185 (585)
Q Consensus 106 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 185 (585)
++++.|+|+++.++......+ ..+++|++|+|+++ .++.... ..+..+++|++|++++|.+.......+. .++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n-~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~ 136 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSF-KHLRHLEILQLSRN-HIRTIEI-GAFNGLANLNTLELFDNRLTTIPNGAFV----YLS 136 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTT-SSCSSCCEEECCSS-CCCEECG-GGGTTCSSCCEEECCSSCCSSCCTTTSC----SCS
T ss_pred CCCcEEEccCCcCCeeCHHHh-hCCCCCCEEECCCC-cCCccCh-hhccCCccCCEEECCCCcCCeeCHhHhh----ccc
Confidence 568888888876654332222 25677888888775 3332211 2234678888888888877654433333 356
Q ss_pred cccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHHH-HHhhCCCceEEcCcccc
Q 007912 186 SLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAH-LLRQAPQLVELGTGTYS 247 (585)
Q Consensus 186 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 247 (585)
+|++|+++++. +.... ...+..+++|++|+++++..+..+.. .+..+++|+.|+++++.
T Consensus 137 ~L~~L~L~~N~--i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 137 KLKELWLRNNP--IESIP-SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196 (440)
T ss_dssp SCCEEECCSCC--CCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred cCceeeCCCCc--ccccC-HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence 88888888662 22111 11234568888888877654433322 35556777777765543
No 85
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.09 E-value=2e-12 Score=123.46 Aligned_cols=86 Identities=15% Similarity=0.176 Sum_probs=35.7
Q ss_pred ccCCCCcEEEecc-cccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccC
Q 007912 103 GGYPWLEELKLKR-MVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFP 181 (585)
Q Consensus 103 ~~~~~L~~L~l~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 181 (585)
..+++|++|++++ +.+.......+ ..+++|++|+++++. ++.. +...+..+++|++|++++|.+.......+.
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~-l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--- 146 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTN-VSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSIS--- 146 (313)
T ss_dssp GGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEEC-CEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGG---
T ss_pred hCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCe-eCCc-CCHHHhCCCCCCEEeCCCCccCCcCChHHh---
Confidence 3455666666653 33322111111 234555555555442 1100 111122455555555555554432222222
Q ss_pred CCCCcccEEEeccc
Q 007912 182 DTCTSLVSLNIACL 195 (585)
Q Consensus 182 ~~~~~L~~L~l~~~ 195 (585)
.+++|++|+++++
T Consensus 147 -~l~~L~~L~L~~N 159 (313)
T 1ogq_A 147 -SLPNLVGITFDGN 159 (313)
T ss_dssp -GCTTCCEEECCSS
T ss_pred -cCCCCCeEECcCC
Confidence 2335555555544
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.06 E-value=5e-10 Score=106.49 Aligned_cols=102 Identities=23% Similarity=0.216 Sum_probs=56.5
Q ss_pred ccCCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCC
Q 007912 103 GGYPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPD 182 (585)
Q Consensus 103 ~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 182 (585)
..+++|++|+++++.+++... ...+++|++|+++++. ++. +.. ...+++|++|++++|.+.+.. . ..
T Consensus 60 ~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~-l~~--~~~-~~~l~~L~~L~l~~n~l~~~~-----~-l~ 126 (308)
T 1h6u_A 60 QYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNP-LKN--VSA-IAGLQSIKTLDLTSTQITDVT-----P-LA 126 (308)
T ss_dssp GGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCC-CSC--CGG-GTTCTTCCEEECTTSCCCCCG-----G-GT
T ss_pred hccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCc-CCC--chh-hcCCCCCCEEECCCCCCCCch-----h-hc
Confidence 456777777777776654322 2355677777777653 222 112 235677777777777665432 1 22
Q ss_pred CCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCC
Q 007912 183 TCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRA 222 (585)
Q Consensus 183 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 222 (585)
.+++|++|+++++. +..... ...+++|+.|+++++
T Consensus 127 ~l~~L~~L~l~~n~--l~~~~~---l~~l~~L~~L~l~~n 161 (308)
T 1h6u_A 127 GLSNLQVLYLDLNQ--ITNISP---LAGLTNLQYLSIGNA 161 (308)
T ss_dssp TCTTCCEEECCSSC--CCCCGG---GGGCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCc--cCcCcc---ccCCCCccEEEccCC
Confidence 35577777776552 221111 345566666666655
No 87
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.05 E-value=3.5e-11 Score=113.41 Aligned_cols=201 Identities=16% Similarity=0.116 Sum_probs=95.1
Q ss_pred CCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCC-CCCcccccccccCCCC
Q 007912 106 PWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESD-VEDPSGNWLSKFPDTC 184 (585)
Q Consensus 106 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~~ 184 (585)
++|++|+++++.++......+ ..+++|++|+++++ .++.... ..+..+++|++|++++|. +.......+. .+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~-~~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~~l~~~~~~~~~----~l 104 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASF-RACRNLTILWLHSN-VLARIDA-AAFTGLALLEQLDLSDNAQLRSVDPATFH----GL 104 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSCTTCCCCCTTTTT----TC
T ss_pred CCceEEEeeCCcCCccCHHHc-ccCCCCCEEECCCC-ccceeCH-hhcCCccCCCEEeCCCCCCccccCHHHhc----CC
Confidence 456666666655543221112 24456666666654 2221111 112355666666666664 4433222222 24
Q ss_pred CcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHHHHHhhCCCceEEcCccccCCCCchhhhhhhhhhhc
Q 007912 185 TSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVELGTGTYSADLRPDIFSNLAGAFSG 264 (585)
Q Consensus 185 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~ 264 (585)
++|++|+++++. +.... ......+++|++|+++++.-.......+..+++|+.|++++....
T Consensus 105 ~~L~~L~l~~n~--l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------------- 166 (285)
T 1ozn_A 105 GRLHTLHLDRCG--LQELG-PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS--------------- 166 (285)
T ss_dssp TTCCEEECTTSC--CCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------------
T ss_pred cCCCEEECCCCc--CCEEC-HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc---------------
Confidence 466666666542 21110 111234566666666655311111112334445555544332211
Q ss_pred ccccccccCccccCcCchhhHhhcCCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc-cchhHHHHHHhcCCCCce
Q 007912 265 CKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY-IEDSGLEALAATCKDLRE 343 (585)
Q Consensus 265 ~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~ 343 (585)
... ......+++|+.|++++|.+..... ..+..+++|+.|+++++ +....... ...+++|+.
T Consensus 167 -----------~~~----~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~ 229 (285)
T 1ozn_A 167 -----------SVP----ERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPTEA-LAPLRALQY 229 (285)
T ss_dssp -----------EEC----TTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCHHH-HTTCTTCCE
T ss_pred -----------ccC----HHHhcCccccCEEECCCCcccccCH-hHccCcccccEeeCCCCcCCcCCHHH-cccCcccCE
Confidence 000 1112246777888888777544322 22345677888888775 33322222 236788888
Q ss_pred EEecc
Q 007912 344 LRVFP 348 (585)
Q Consensus 344 L~l~~ 348 (585)
|++++
T Consensus 230 L~l~~ 234 (285)
T 1ozn_A 230 LRLND 234 (285)
T ss_dssp EECCS
T ss_pred EeccC
Confidence 88873
No 88
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.04 E-value=6.7e-09 Score=90.18 Aligned_cols=125 Identities=19% Similarity=0.169 Sum_probs=89.4
Q ss_pred HHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHH---hhhCCCCcEEecCC-CCCHHHHHHHHhh---cccccee
Q 007912 390 LVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAI---VQHCKDLRRLSLSG-LLTDRVFEYIGTY---AKKLEML 462 (585)
Q Consensus 390 ~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~~L~l~~-~~~~~~~~~l~~~---~~~L~~L 462 (585)
+......+++|++|+|+++ ..++ +.+...+ +...++|++|+|++ .+++.+...++.. .++|++|
T Consensus 28 l~~~l~~~~~L~~L~L~~n-----~~i~----~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L 98 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNI-----MNIP----VPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSL 98 (185)
T ss_dssp HHHHHTTCTTCCEEECTTC-----TTCC----HHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred HHHHHhcCCCCCEEEecCC-----CCCC----HHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEE
Confidence 3444445566777666542 1233 4444333 34456788888877 7888887777654 4679999
Q ss_pred eccccCCCHHHHHHHHhc---CCCCCeEEe--eCCCCChHHHHHH---HHhcccCCEEEeecccCCHHH
Q 007912 463 SVAFAGESDLGLHHVLSG---CDSLRKLEI--MDCPFGDKALLAN---AAKLETMRSLWMSSCSVSFEA 523 (585)
Q Consensus 463 ~l~~~~i~~~~~~~l~~~---~~~L~~L~l--~~~~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~~~ 523 (585)
+|++|.|++.+...++.. +++|++|++ ++|.+++++...+ +...++|+.|++++|.++..+
T Consensus 99 ~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 99 NVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp ECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred ECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 999999999998877554 578999999 7889999885444 455689999999999987776
No 89
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.03 E-value=8e-10 Score=106.49 Aligned_cols=137 Identities=18% Similarity=0.132 Sum_probs=93.6
Q ss_pred HHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHh-hccccceeecccc--
Q 007912 392 TIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGT-YAKKLEMLSVAFA-- 467 (585)
Q Consensus 392 ~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~-~~~~L~~L~l~~~-- 467 (585)
.+...+|+|++|.+.++. .+. -.. + ..++|++|++.. .+++.++..++. .+|+|+.|+|+.+
T Consensus 166 ~ll~~~P~L~~L~L~g~~-----~l~----l~~----~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~ 231 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTN-----NLS----IGK----K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVE 231 (362)
T ss_dssp HHHHTCTTCCEEEEECCB-----TCB----CCS----C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCG
T ss_pred HHHhcCCCCcEEEEeCCC-----Cce----ecc----c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccc
Confidence 444567888888886531 111 000 1 267889998865 677888877764 4788999988532
Q ss_pred C-CCHH---HHHHHH--hcCCCCCeEEeeCCCCChHHHHHHHH--hcccCCEEEeecccCCHHHHHHHHh---hCCCcEE
Q 007912 468 G-ESDL---GLHHVL--SGCDSLRKLEIMDCPFGDKALLANAA--KLETMRSLWMSSCSVSFEACKLLGQ---KMPRLNV 536 (585)
Q Consensus 468 ~-i~~~---~~~~l~--~~~~~L~~L~l~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~i~~~~~~~l~~---~~~~l~~ 536 (585)
. ..+. .+..++ ..+|+|++|++.+|.+++.+...+.. .+|+|++|+++.|.+++.|.+.+.. .+|+++.
T Consensus 232 ~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~ 311 (362)
T 2ra8_A 232 DYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311 (362)
T ss_dssp GGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSE
T ss_pred ccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceE
Confidence 1 1221 122222 24899999999999998876554543 5889999999999999999888764 4678877
Q ss_pred EEecCC
Q 007912 537 EVIDES 542 (585)
Q Consensus 537 ~~~~~~ 542 (585)
..+..+
T Consensus 312 L~L~~n 317 (362)
T 2ra8_A 312 INMKYN 317 (362)
T ss_dssp EECCSB
T ss_pred EECCCC
Confidence 666655
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.95 E-value=3.1e-10 Score=100.22 Aligned_cols=108 Identities=18% Similarity=0.174 Sum_probs=72.4
Q ss_pred hCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccC-CCHHH
Q 007912 396 NRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAG-ESDLG 473 (585)
Q Consensus 396 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~ 473 (585)
.+++|++|+++++.. + +.. ...+..+++|+.|++++ .+++.....+ ..+++|+.|++++|. +++..
T Consensus 86 ~l~~L~~L~l~~n~l------~----~~~-~~~l~~l~~L~~L~Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 86 GLSNLERLRIMGKDV------T----SDK-IPNLSGLTSLTLLDISHSAHDDSILTKI-NTLPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp TCTTCCEEEEECTTC------B----GGG-SCCCTTCTTCCEEECCSSBCBGGGHHHH-TTCSSCCEEECCSCTBCCCCG
T ss_pred cCCCCCEEEeECCcc------C----ccc-ChhhcCCCCCCEEEecCCccCcHhHHHH-hhCCCCCEEEccCCCCccccH
Confidence 467888888876533 1 100 11145678888888887 5666555544 346788899998887 76653
Q ss_pred HHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCH
Q 007912 474 LHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSF 521 (585)
Q Consensus 474 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~ 521 (585)
. ...+++|++|++++|.+++.. .+..+++|+.|++++|+|+.
T Consensus 154 --~-l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 154 --P-LKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp --G-GGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC----
T ss_pred --h-hcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCcccCC
Confidence 2 367888999999988877643 45678889999999888754
No 91
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.94 E-value=9.7e-10 Score=103.49 Aligned_cols=170 Identities=19% Similarity=0.147 Sum_probs=104.2
Q ss_pred cCCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc-cchhHHHHHHhcCCCCceEEeccCCCCCCCCCCCcchHHHH
Q 007912 288 VCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY-IEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSLTEQGLV 366 (585)
Q Consensus 288 ~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~ 366 (585)
.+++|+.|++++|.+.... . +..+++|+.|+++++ +.+... ...+++|+.|++++ +.++...
T Consensus 44 ~l~~L~~L~l~~~~i~~~~--~-~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~---------n~l~~~~-- 106 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ--G-IQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDE---------NKVKDLS-- 106 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT--T-GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCS---------SCCCCGG--
T ss_pred hcCcccEEEccCCCcccCh--h-HhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCC---------CcCCCCh--
Confidence 3577888888887744321 1 455677777777764 322111 23566777777763 1222210
Q ss_pred HHHhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCC
Q 007912 367 LVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLT 445 (585)
Q Consensus 367 ~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~ 445 (585)
. ...+++|+.|+++++.... + ..+..+++|+.|++++ .++
T Consensus 107 -------------------------~-l~~l~~L~~L~L~~n~i~~---~----------~~l~~l~~L~~L~l~~n~l~ 147 (291)
T 1h6t_A 107 -------------------------S-LKDLKKLKSLSLEHNGISD---I----------NGLVHLPQLESLYLGNNKIT 147 (291)
T ss_dssp -------------------------G-GTTCTTCCEEECTTSCCCC---C----------GGGGGCTTCCEEECCSSCCC
T ss_pred -------------------------h-hccCCCCCEEECCCCcCCC---C----------hhhcCCCCCCEEEccCCcCC
Confidence 0 1235666666665543211 1 0144567777777766 333
Q ss_pred HHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCHH
Q 007912 446 DRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFE 522 (585)
Q Consensus 446 ~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~ 522 (585)
+. .....+++|+.|++++|.+++... ...+++|++|++++|.+++.. .+..+++|+.|++++|+++..
T Consensus 148 ~~---~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l~---~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 148 DI---TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLR---ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CC---GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCG---GGTTCTTCSEEEEEEEEEECC
T ss_pred cc---hhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCCh---hhccCCCCCEEECcCCcccCC
Confidence 32 122346788888888888766543 377899999999999887643 357788999999999987543
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.92 E-value=9.7e-10 Score=96.99 Aligned_cols=106 Identities=23% Similarity=0.186 Sum_probs=65.7
Q ss_pred cCCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCC
Q 007912 104 GYPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDT 183 (585)
Q Consensus 104 ~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 183 (585)
.+++|++|+++++.+++-. . ...+++|++|+++++ .++.. .. ...+++|++|++++|.+.+.....+. .
T Consensus 42 ~l~~L~~L~l~~n~i~~l~--~-l~~l~~L~~L~l~~n-~~~~~--~~-l~~l~~L~~L~l~~n~l~~~~~~~l~----~ 110 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT--G-IEYAHNIKDLTINNI-HATNY--NP-ISGLSNLERLRIMGKDVTSDKIPNLS----G 110 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT--T-GGGCTTCSEEEEESC-CCSCC--GG-GTTCTTCCEEEEECTTCBGGGSCCCT----T
T ss_pred hcCCccEEeccCCCccChH--H-HhcCCCCCEEEccCC-CCCcc--hh-hhcCCCCCEEEeECCccCcccChhhc----C
Confidence 3467888888877666421 2 235678888888877 33221 22 23678888888888877654433333 3
Q ss_pred CCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCC
Q 007912 184 CTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAV 223 (585)
Q Consensus 184 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 223 (585)
+++|++|+++++ .+.......+ ..+++|++|+++++.
T Consensus 111 l~~L~~L~Ls~n--~i~~~~~~~l-~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 111 LTSLTLLDISHS--AHDDSILTKI-NTLPKVNSIDLSYNG 147 (197)
T ss_dssp CTTCCEEECCSS--BCBGGGHHHH-TTCSSCCEEECCSCT
T ss_pred CCCCCEEEecCC--ccCcHhHHHH-hhCCCCCEEEccCCC
Confidence 557888888776 4554333333 456777777777664
No 93
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.91 E-value=5.2e-11 Score=111.19 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=29.5
Q ss_pred CCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc-cchhHHHHHHhcCCCCceEEec
Q 007912 289 CSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY-IEDSGLEALAATCKDLRELRVF 347 (585)
Q Consensus 289 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~l~ 347 (585)
+++|+.|+++++.+.... -+..+++|+.|+++++ +.+ +..+ ..+++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~~~---~l~~l~~L~~L~l~~n~l~~--~~~l-~~l~~L~~L~L~ 93 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ---GIQYLPNVRYLALGGNKLHD--ISAL-KELTNLTYLILT 93 (272)
T ss_dssp HTTCCEEECTTSCCCCCT---TGGGCTTCCEEECTTSCCCC--CGGG-TTCTTCCEEECT
T ss_pred ccceeeeeeCCCCccccc---ccccCCCCcEEECCCCCCCC--chhh-cCCCCCCEEECC
Confidence 567777777776643321 1345667777777654 222 1112 256667777776
No 94
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.90 E-value=2.1e-11 Score=114.32 Aligned_cols=204 Identities=12% Similarity=0.106 Sum_probs=120.1
Q ss_pred CCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc-cchhHHHHHHhcCCCCceEEeccCCCCCCCCCCCcchHHHHHH
Q 007912 290 SGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY-IEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSLTEQGLVLV 368 (585)
Q Consensus 290 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~~l 368 (585)
++|++|++++|.+...... .+..+++|+.|+++++ +.......+ ..+++|++|++++ +.++..... .
T Consensus 28 ~~l~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~---------n~l~~~~~~-~ 95 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILTG---------NPIQSLALG-A 95 (276)
T ss_dssp TTCCEEECTTCCCCEECTT-TTTTCTTCSEEECTTCCCCEECTTTT-TTCTTCCEEECTT---------CCCCEECTT-T
T ss_pred CCccEEECCCCcccccCHh-HhccccCCcEEECCCCcCCccCHHHc-cCCcCCCEEECCC---------CccCccChh-h
Confidence 4688888887775443221 2346778888888765 222111111 3577888888874 223222111 1
Q ss_pred HhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHH
Q 007912 369 SEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDR 447 (585)
Q Consensus 369 ~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~ 447 (585)
...+++|++|.+..+.++...... ...+++|++|+++++.... ..+...+..+++|++|++++ .++..
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~----------~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQS----------FKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCC-CTTCTTCCEEECCSSCCCC----------CCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred hcCCccccEEECCCCCccccCchh-cccCCCCCEEECcCCccce----------ecCchhhccCCCCCEEECCCCCCCcC
Confidence 234677887755444444221111 2357889999998654311 11122366788999999987 44432
Q ss_pred HHHHHHhhccccc----eeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCC
Q 007912 448 VFEYIGTYAKKLE----MLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVS 520 (585)
Q Consensus 448 ~~~~l~~~~~~L~----~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 520 (585)
....+. .+++|+ .|++++|.++......+ ...+|++|++++|.++.... ..+..+++|+.|++++|+++
T Consensus 165 ~~~~~~-~l~~L~~l~l~L~ls~n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 165 YCTDLR-VLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CGGGGH-HHHTCTTCCEEEECCSSCCCEECTTSS--CSCCEEEEECCSSCCSCCCT-TTTTTCCSCCEEECCSSCBC
T ss_pred CHHHhh-hhhhccccceeeecCCCcccccCcccc--CCCcccEEECCCCceeecCH-hHhcccccccEEEccCCccc
Confidence 111111 123355 88999998875443332 34589999999998765432 24567899999999999864
No 95
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.85 E-value=3.1e-08 Score=85.99 Aligned_cols=127 Identities=17% Similarity=0.118 Sum_probs=102.2
Q ss_pred chhHHHHHHccCCCCcEEEeccc-ccChHHHHHHHHh---CCCCcEEeecccCCCCHHHHHHHH---hcCCCCcEEEccc
Q 007912 94 VYPWIRAMAGGYPWLEELKLKRM-VVTDESLELIAKS---FKNFKVLVLSSCEGFSTHGLAAIA---ADCKNLKELDLWE 166 (585)
Q Consensus 94 ~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~l~~l~~~---~~~L~~L~L~~~~~~~~~~l~~l~---~~~~~L~~L~l~~ 166 (585)
+...+..+....+.|++|+|+++ .+.+.+...++.. .++|++|+|+++ .+++.+...+. ...++|++|++++
T Consensus 24 ~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcC
Confidence 45667778888999999999999 9999888777654 467999999987 68887765554 4568999999999
Q ss_pred CCCCCcccccccccCCCCCcccEEEe--ccccCcCCHHHHHH---HHHhCCCCceEEeCCCC
Q 007912 167 SDVEDPSGNWLSKFPDTCTSLVSLNI--ACLGSEVSFSALER---LVVRCPNLRTLRLNRAV 223 (585)
Q Consensus 167 ~~~~~~~~~~l~~~~~~~~~L~~L~l--~~~~~~~~~~~l~~---l~~~~~~L~~L~l~~~~ 223 (585)
|.+++.+...+......+++|++|++ +++ .+++.+... .....++|++|+++++.
T Consensus 103 N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N--~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 103 NFISGSGILALVEALQSNTSLIELRIDNQSQ--PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp SCCCHHHHHHHHHGGGGCSSCCEEECCCCSS--CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CcCCHHHHHHHHHHHHhCCCceEEEecCCCC--CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 99999887777777777889999999 656 788877444 44556889999998875
No 96
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.85 E-value=1.2e-09 Score=101.99 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=19.8
Q ss_pred cCCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc
Q 007912 288 VCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY 325 (585)
Q Consensus 288 ~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 325 (585)
.+++|+.|++++|.+..... ..+..+++|+.|++.++
T Consensus 179 ~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 179 KLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSS
T ss_pred CCccCCEEECCCCcCCccCH-HHHhCCcCCCEEEccCC
Confidence 35666666666665332211 22345566666666654
No 97
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.85 E-value=1.8e-09 Score=71.48 Aligned_cols=40 Identities=33% Similarity=0.612 Sum_probs=34.2
Q ss_pred cCCCCCCCCHHHHHHHHhccCChHHHHHHHHHhHHHHHhhc
Q 007912 3 KKMSYSSLPEDVLEHVFSFVQSDKDRNVISLVCKSWYEIER 43 (585)
Q Consensus 3 ~~~~i~~LP~ell~~If~~L~~~~~~~~~~~Vcr~W~~~~~ 43 (585)
....+..||+|++.+||+||+ .+++.++++|||+|++++.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~-~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSC-GGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhC
Confidence 346789999999999999999 7899999999999999973
No 98
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.84 E-value=2e-10 Score=108.05 Aligned_cols=110 Identities=16% Similarity=0.116 Sum_probs=70.4
Q ss_pred hCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHH
Q 007912 396 NRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGL 474 (585)
Q Consensus 396 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 474 (585)
.+++|+.|+++++.... +. ...+..+++|++|++++ .++... ......+++|+.|++++|+++....
T Consensus 98 ~l~~L~~L~l~~N~l~~---l~--------~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~ 165 (290)
T 1p9a_G 98 TLPALTVLDVSFNRLTS---LP--------LGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNLTELPA 165 (290)
T ss_dssp TCTTCCEEECCSSCCCC---CC--------SSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred cCCCCCEEECCCCcCcc---cC--------HHHHcCCCCCCEEECCCCCCCccC-hhhcccccCCCEEECCCCcCCccCH
Confidence 46778888877654311 10 01245678888888877 333211 1112346789999999998765443
Q ss_pred HHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCC
Q 007912 475 HHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVS 520 (585)
Q Consensus 475 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 520 (585)
..+ ..+++|++|++++|.++.. ...+..+++|+.|++++|++.
T Consensus 166 ~~~-~~l~~L~~L~L~~N~l~~i--p~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 166 GLL-NGLENLDTLLLQENSLYTI--PKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTT-TTCTTCCEEECCSSCCCCC--CTTTTTTCCCSEEECCSCCBC
T ss_pred HHh-cCcCCCCEEECCCCcCCcc--ChhhcccccCCeEEeCCCCcc
Confidence 333 5688999999999977632 223345678999999998753
No 99
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.83 E-value=2.8e-10 Score=106.59 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=24.8
Q ss_pred CCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc
Q 007912 289 CSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY 325 (585)
Q Consensus 289 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 325 (585)
..+|+.|++++|.+.... ..++..+++|+.|+++++
T Consensus 199 ~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 199 EIRLKELALDTNQLKSVP-DGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp SCCEEEEECCSSCCSCCC-TTTTTTCCSCCEEECCSS
T ss_pred CCcccEEECCCCceeecC-HhHhcccccccEEEccCC
Confidence 347888999888754322 123456788999988874
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.83 E-value=2.3e-09 Score=111.02 Aligned_cols=84 Identities=25% Similarity=0.207 Sum_probs=48.4
Q ss_pred hhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcc
Q 007912 429 VQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLE 507 (585)
Q Consensus 429 ~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 507 (585)
+..+++|+.|+|++ .+++. .....+++|+.|+|++|.+++... +..+++|+.|+|++|.+++.. .+..++
T Consensus 127 l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l~---~l~~l~ 197 (605)
T 1m9s_A 127 LVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLR---ALAGLK 197 (605)
T ss_dssp GGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCG---GGTTCT
T ss_pred ccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCCh---HHccCC
Confidence 34456666666655 33322 112335667777777776654433 356677777777777666532 345667
Q ss_pred cCCEEEeecccCCH
Q 007912 508 TMRSLWMSSCSVSF 521 (585)
Q Consensus 508 ~L~~L~l~~~~i~~ 521 (585)
+|+.|++++|.++.
T Consensus 198 ~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 198 NLDVLELFSQECLN 211 (605)
T ss_dssp TCSEEECCSEEEEC
T ss_pred CCCEEEccCCcCcC
Confidence 77777777776543
No 101
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.80 E-value=1.7e-10 Score=107.52 Aligned_cols=179 Identities=16% Similarity=0.104 Sum_probs=103.8
Q ss_pred CCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc-cchhHHHHHHhcCCCCceEEeccCCCCCCCCCCCcchHHHHHH
Q 007912 290 SGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY-IEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSLTEQGLVLV 368 (585)
Q Consensus 290 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~~l 368 (585)
+++++|++++|.+..... ..+..+++|+.|+++++ +... .......+++|++|+++. +.++...
T Consensus 37 ~~l~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~---------n~l~~~~---- 101 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPS-KAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTD---------NKLQALP---- 101 (270)
T ss_dssp TTCSEEECCSSCCSCCCT-TSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCS---------SCCCCCC----
T ss_pred CCCCEEECcCCCCCeeCH-HHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCC---------CcCCcCC----
Confidence 578999999887543221 12346677888888764 2211 111112466777777763 1121100
Q ss_pred HhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHH
Q 007912 369 SEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDR 447 (585)
Q Consensus 369 ~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~ 447 (585)
. .....+++|++|+++++.... +. ...+..+++|++|++++ .++..
T Consensus 102 ---------------------~-~~~~~l~~L~~L~l~~n~l~~---~~--------~~~~~~l~~L~~L~Ls~n~l~~~ 148 (270)
T 2o6q_A 102 ---------------------I-GVFDQLVNLAELRLDRNQLKS---LP--------PRVFDSLTKLTYLSLGYNELQSL 148 (270)
T ss_dssp ---------------------T-TTTTTCSSCCEEECCSSCCCC---CC--------TTTTTTCTTCCEEECCSSCCCCC
T ss_pred ---------------------H-hHcccccCCCEEECCCCccCe---eC--------HHHhCcCcCCCEEECCCCcCCcc
Confidence 0 011235677777776543211 10 11245677888888876 33321
Q ss_pred HHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccC
Q 007912 448 VFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSV 519 (585)
Q Consensus 448 ~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 519 (585)
.. .....+++|+.|++++|.++......+ ..+++|++|++++|.++.... ..+..+++|+.|++++|++
T Consensus 149 ~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 149 PK-GVFDKLTSLKELRLYNNQLKRVPEGAF-DKLTELKTLKLDNNQLKRVPE-GAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp CT-TTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCB
T ss_pred CH-hHccCCcccceeEecCCcCcEeChhHh-ccCCCcCEEECCCCcCCcCCH-HHhccccCCCEEEecCCCe
Confidence 11 112346788899998888765544333 567899999999997764321 1346788999999999875
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.77 E-value=1.4e-08 Score=95.53 Aligned_cols=100 Identities=23% Similarity=0.212 Sum_probs=44.4
Q ss_pred CCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCC
Q 007912 105 YPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTC 184 (585)
Q Consensus 105 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~ 184 (585)
+++|+.|+++++.+... .. ...+++|++|+++++. ++.. .. ...+++|++|++++|.+.+.. . ...+
T Consensus 45 l~~L~~L~l~~~~i~~~--~~-~~~l~~L~~L~L~~n~-l~~~--~~-l~~l~~L~~L~l~~n~l~~~~-----~-l~~l 111 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--QG-IQYLPNVTKLFLNGNK-LTDI--KP-LANLKNLGWLFLDENKVKDLS-----S-LKDL 111 (291)
T ss_dssp HHTCCEEECTTSCCCCC--TT-GGGCTTCCEEECCSSC-CCCC--GG-GTTCTTCCEEECCSSCCCCGG-----G-GTTC
T ss_pred cCcccEEEccCCCcccC--hh-HhcCCCCCEEEccCCc-cCCC--cc-cccCCCCCEEECCCCcCCCCh-----h-hccC
Confidence 34555666655544332 11 1234556666655542 2211 11 235556666666655544321 1 1234
Q ss_pred CcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCC
Q 007912 185 TSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRA 222 (585)
Q Consensus 185 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 222 (585)
++|++|+++++. +... . -...+++|+.|+++++
T Consensus 112 ~~L~~L~L~~n~--i~~~--~-~l~~l~~L~~L~l~~n 144 (291)
T 1h6t_A 112 KKLKSLSLEHNG--ISDI--N-GLVHLPQLESLYLGNN 144 (291)
T ss_dssp TTCCEEECTTSC--CCCC--G-GGGGCTTCCEEECCSS
T ss_pred CCCCEEECCCCc--CCCC--h-hhcCCCCCCEEEccCC
Confidence 455555555442 2211 1 1233455555555544
No 103
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.75 E-value=1.1e-09 Score=91.87 Aligned_cols=83 Identities=18% Similarity=0.213 Sum_probs=36.1
Q ss_pred hCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHH--HHHHHhcc
Q 007912 431 HCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKAL--LANAAKLE 507 (585)
Q Consensus 431 ~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~--~~~~~~l~ 507 (585)
.+++|+.|++++ .++.. +......+++|++|++++|.+++.........+++|++|++++|.+++... ...+..++
T Consensus 62 ~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~ 140 (149)
T 2je0_A 62 KLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP 140 (149)
T ss_dssp CCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCT
T ss_pred cCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCC
Confidence 344555555544 22221 222223344555555555555443221122445555555555554433221 12344455
Q ss_pred cCCEEEe
Q 007912 508 TMRSLWM 514 (585)
Q Consensus 508 ~L~~L~l 514 (585)
+|+.|++
T Consensus 141 ~L~~L~l 147 (149)
T 2je0_A 141 QLTYLDG 147 (149)
T ss_dssp TCCEETT
T ss_pred CcccccC
Confidence 5555544
No 104
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.74 E-value=1e-09 Score=94.06 Aligned_cols=109 Identities=13% Similarity=0.112 Sum_probs=60.1
Q ss_pred hCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHH
Q 007912 396 NRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGL 474 (585)
Q Consensus 396 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 474 (585)
.+++|+.|+++++..... ..+..+++|+.|++++ .++.. +......+++|+.|++++|.+++...
T Consensus 47 ~l~~L~~L~l~~n~l~~~-------------~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~ 112 (168)
T 2ell_A 47 EFVNLEFLSLINVGLISV-------------SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNLSGNKLKDIST 112 (168)
T ss_dssp GGGGCCEEEEESSCCCCC-------------SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEECBSSSCCSSGG
T ss_pred hCCCCCEEeCcCCCCCCh-------------hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEeccCCccCcchh
Confidence 356666666665432111 1134556677777665 33322 22333445667777777777655322
Q ss_pred -HHHHhcCCCCCeEEeeCCCCChHHH--HHHHHhcccCCEEEeecccC
Q 007912 475 -HHVLSGCDSLRKLEIMDCPFGDKAL--LANAAKLETMRSLWMSSCSV 519 (585)
Q Consensus 475 -~~l~~~~~~L~~L~l~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~i 519 (585)
.. ...+++|++|++++|.++.... ...+..+++|+.|++++|.+
T Consensus 113 ~~~-l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 113 LEP-LKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp GGG-GSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred HHH-HhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 22 2556777777777775544321 12456677777777777754
No 105
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.72 E-value=1.7e-10 Score=105.57 Aligned_cols=196 Identities=12% Similarity=0.015 Sum_probs=99.1
Q ss_pred CCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc--cchhHHHHHHhcCCCCceEEeccCCCCCCCCCCCcchHHHHH
Q 007912 290 SGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY--IEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSLTEQGLVL 367 (585)
Q Consensus 290 ~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~~ 367 (585)
++|+.|++++|.+..... ..+..+++|+.|+++++ ++.-.... ...+++|++|++++ |+.++.....
T Consensus 31 ~~l~~L~l~~n~l~~i~~-~~~~~l~~L~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~l~~--------~n~l~~i~~~- 99 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPS-HAFSNLPNISRIYVSIDVTLQQLESHS-FYNLSKVTHIEIRN--------TRNLTYIDPD- 99 (239)
T ss_dssp TTCCEEEEESCCCSEECT-TTTTTCTTCCEEEEECCSSCCEECTTT-EESCTTCCEEEEEE--------ETTCCEECTT-
T ss_pred CcccEEEEeCCcceEECH-HHccCCCCCcEEeCCCCCCcceeCHhH-cCCCcCCcEEECCC--------CCCeeEcCHH-
Confidence 478888888877543221 12346778888888765 32211111 13677888888872 2333321111
Q ss_pred HHhCCCCCceehhcccCCcHHHHHHHHhhCCCCc---eeeeeec-CCCCCCCCCCCcchhhHHHHhhhCCCCc-EEecCC
Q 007912 368 VSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMI---RFRLCII-DPQTPDYLTLEPLDVGFGAIVQHCKDLR-RLSLSG 442 (585)
Q Consensus 368 l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~---~L~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~ 442 (585)
....+++|++|.+..+.++. +.. ...+++|+ .|+++++ ... .+. ...+..+++|+ .|++++
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~---~i~--------~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMT---SIP--------VNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp SEECCTTCCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCC---EEC--------TTTTTTTBSSEEEEECCS
T ss_pred HhCCCCCCCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchh---hcC--------cccccchhcceeEEEcCC
Confidence 11235666666544444432 111 22345555 6666653 210 010 01134566777 777765
Q ss_pred -CCCHHHHHHHHhhccccceeeccccC-CCHHHHHHHHhcC-CCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecc
Q 007912 443 -LLTDRVFEYIGTYAKKLEMLSVAFAG-ESDLGLHHVLSGC-DSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSC 517 (585)
Q Consensus 443 -~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 517 (585)
.++..... .... ++|+.|++++|+ ++......+ .++ ++|++|++++|+++.... ..+++|+.|++.++
T Consensus 166 n~l~~i~~~-~~~~-~~L~~L~L~~n~~l~~i~~~~~-~~l~~~L~~L~l~~N~l~~l~~----~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 166 NGFTSVQGY-AFNG-TKLDAVYLNKNKYLTVIDKDAF-GGVYSGPSLLDVSQTSVTALPS----KGLEHLKELIARNT 236 (239)
T ss_dssp CCCCEECTT-TTTT-CEEEEEECTTCTTCCEECTTTT-TTCSBCCSEEECTTCCCCCCCC----TTCTTCSEEECTTC
T ss_pred CCCcccCHh-hcCC-CCCCEEEcCCCCCcccCCHHHh-hccccCCcEEECCCCccccCCh----hHhccCceeeccCc
Confidence 33211111 1112 467777777774 654433333 455 677777777776543221 14566777766655
No 106
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.70 E-value=3.2e-09 Score=88.89 Aligned_cols=127 Identities=18% Similarity=0.135 Sum_probs=89.5
Q ss_pred CCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHH
Q 007912 397 RPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLH 475 (585)
Q Consensus 397 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~ 475 (585)
.++|+.|+++++... +..+...+..+++|+.|++++ .+++. .....+++|+.|++++|.+++.. .
T Consensus 16 ~~~l~~L~l~~n~l~----------~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~-~ 81 (149)
T 2je0_A 16 PSDVKELVLDNSRSN----------EGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGL-E 81 (149)
T ss_dssp GGGCSEEECTTCBCB----------TTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCT-H
T ss_pred CccCeEEEccCCcCC----------hhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchH-H
Confidence 367888888765431 011122356788999999987 44443 22234788999999999987743 3
Q ss_pred HHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCHHHH--HHHHhhCCCcEEE
Q 007912 476 HVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFEAC--KLLGQKMPRLNVE 537 (585)
Q Consensus 476 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~l~~~~~~l~~~ 537 (585)
.....+++|++|++++|.+++......+..+++|++|++++|.++.... ......+|+++..
T Consensus 82 ~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 82 VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp HHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred HHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence 3336689999999999999886544567889999999999998765433 1233467777654
No 107
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.68 E-value=3e-09 Score=99.07 Aligned_cols=178 Identities=17% Similarity=0.167 Sum_probs=91.4
Q ss_pred CCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCC
Q 007912 106 PWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCT 185 (585)
Q Consensus 106 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 185 (585)
+++++|+++++.++......+ ..+++|++|+++++. ++.. ...++..+++|++|++++|.+.......+ ..++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~i-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~ 109 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAF-HRLTKLRLLYLNDNK-LQTL-PAGIFKELKNLETLWVTDNKLQALPIGVF----DQLV 109 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSS-SSCTTCCEEECCSSC-CSCC-CTTTTSSCTTCCEEECCSSCCCCCCTTTT----TTCS
T ss_pred CCCCEEECcCCCCCeeCHHHh-cCCCCCCEEECCCCc-cCee-ChhhhcCCCCCCEEECCCCcCCcCCHhHc----cccc
Confidence 457777777765543221112 245667777776642 2211 11222356777777777776654332222 2345
Q ss_pred cccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHH-HHHhhCCCceEEcCccccCCCCchhhhhhhhhhhc
Q 007912 186 SLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLA-HLLRQAPQLVELGTGTYSADLRPDIFSNLAGAFSG 264 (585)
Q Consensus 186 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~ 264 (585)
+|++|+++++. +.... ......+++|++|+++++. +..++ ..+..+++|+.|++++.....
T Consensus 110 ~L~~L~l~~n~--l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~-------------- 171 (270)
T 2o6q_A 110 NLAELRLDRNQ--LKSLP-PRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKR-------------- 171 (270)
T ss_dssp SCCEEECCSSC--CCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC--------------
T ss_pred CCCEEECCCCc--cCeeC-HHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcE--------------
Confidence 77777777552 22110 0112346677777776653 11111 123445555555554332211
Q ss_pred ccccccccCccccCcCchhhHhhcCCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc
Q 007912 265 CKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY 325 (585)
Q Consensus 265 ~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 325 (585)
.. ...+..+++|+.|++++|.+..... ..+..+++|+.|++.++
T Consensus 172 ------------~~----~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 172 ------------VP----EGAFDKLTELKTLKLDNNQLKRVPE-GAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp ------------CC----TTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSS
T ss_pred ------------eC----hhHhccCCCcCEEECCCCcCCcCCH-HHhccccCCCEEEecCC
Confidence 11 1112346788888888887443221 22456788888888875
No 108
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.67 E-value=3.4e-09 Score=99.64 Aligned_cols=80 Identities=19% Similarity=0.191 Sum_probs=37.7
Q ss_pred CCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCC
Q 007912 106 PWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCT 185 (585)
Q Consensus 106 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 185 (585)
++++.|+++++.++......+. .+++|+.|+++++. ++... .. ..+++|++|++++|.+.. ++.....++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~--~~-~~l~~L~~L~Ls~N~l~~-----l~~~~~~l~ 100 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDRAE-LTKLQ--VD-GTLPVLGTLDLSHNQLQS-----LPLLGQTLP 100 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGT-TCTTCCEEECTTSC-CCEEE--CC-SCCTTCCEEECCSSCCSS-----CCCCTTTCT
T ss_pred CCCCEEEcCCCcCCccCHHHhh-cCCCCCEEECCCCc-cCccc--CC-CCCCcCCEEECCCCcCCc-----CchhhccCC
Confidence 4566666666655432222222 34556666665542 22110 01 245666666666665442 222223345
Q ss_pred cccEEEeccc
Q 007912 186 SLVSLNIACL 195 (585)
Q Consensus 186 ~L~~L~l~~~ 195 (585)
+|++|+++++
T Consensus 101 ~L~~L~l~~N 110 (290)
T 1p9a_G 101 ALTVLDVSFN 110 (290)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEECCCC
Confidence 5666666544
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.67 E-value=3e-08 Score=102.73 Aligned_cols=100 Identities=22% Similarity=0.209 Sum_probs=45.9
Q ss_pred CCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCC
Q 007912 105 YPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTC 184 (585)
Q Consensus 105 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~ 184 (585)
+++|+.|+++++.+... ..+ ..+++|+.|+|+++. ++.. .. +..+++|+.|++++|.+.... . ...+
T Consensus 42 L~~L~~L~l~~n~i~~l--~~l-~~l~~L~~L~Ls~N~-l~~~--~~-l~~l~~L~~L~Ls~N~l~~l~--~----l~~l 108 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSV--QGI-QYLPNVTKLFLNGNK-LTDI--KP-LTNLKNLGWLFLDENKIKDLS--S----LKDL 108 (605)
T ss_dssp HTTCCCCBCTTCCCCCC--TTG-GGCTTCCEEECTTSC-CCCC--GG-GGGCTTCCEEECCSSCCCCCT--T----STTC
T ss_pred CCCCCEEECcCCCCCCC--hHH-ccCCCCCEEEeeCCC-CCCC--hh-hccCCCCCEEECcCCCCCCCh--h----hccC
Confidence 34555555555544332 111 245556666665542 2111 11 235566666666666554321 1 1234
Q ss_pred CcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCC
Q 007912 185 TSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRA 222 (585)
Q Consensus 185 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 222 (585)
++|++|+++++. +... . -...+++|+.|+|+++
T Consensus 109 ~~L~~L~Ls~N~--l~~l--~-~l~~l~~L~~L~Ls~N 141 (605)
T 1m9s_A 109 KKLKSLSLEHNG--ISDI--N-GLVHLPQLESLYLGNN 141 (605)
T ss_dssp TTCCEEECTTSC--CCCC--G-GGGGCTTCSEEECCSS
T ss_pred CCCCEEEecCCC--CCCC--c-cccCCCccCEEECCCC
Confidence 466666666552 2211 1 1234556666666554
No 110
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.62 E-value=2e-09 Score=98.28 Aligned_cols=128 Identities=9% Similarity=0.042 Sum_probs=65.0
Q ss_pred CCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEccc-CCCCCcccccccccCCCCC
Q 007912 107 WLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWE-SDVEDPSGNWLSKFPDTCT 185 (585)
Q Consensus 107 ~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~~~~ 185 (585)
++++|+++++.++...-..+ ..+++|++|+++++..++.... ..+..+++|++|++++ +.+.......+. .++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~-~~l~~L~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~l~~~n~l~~i~~~~f~----~l~ 105 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAF-SNLPNISRIYVSIDVTLQQLES-HSFYNLSKVTHIEIRNTRNLTYIDPDALK----ELP 105 (239)
T ss_dssp TCCEEEEESCCCSEECTTTT-TTCTTCCEEEEECCSSCCEECT-TTEESCTTCCEEEEEEETTCCEECTTSEE----CCT
T ss_pred cccEEEEeCCcceEECHHHc-cCCCCCcEEeCCCCCCcceeCH-hHcCCCcCCcEEECCCCCCeeEcCHHHhC----CCC
Confidence 67777777765553221112 2456777777776532221111 1123667777777776 665543322222 355
Q ss_pred cccEEEeccccCcCCHHHHHHHHHhCCCCc---eEEeCCCCChHHHHH-HHhhCCCce-EEcCcc
Q 007912 186 SLVSLNIACLGSEVSFSALERLVVRCPNLR---TLRLNRAVPLEKLAH-LLRQAPQLV-ELGTGT 245 (585)
Q Consensus 186 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~---~L~l~~~~~~~~~~~-~~~~~~~L~-~L~l~~ 245 (585)
+|++|+++++. +.. +.. ...+++|+ .|+++++..+..++. .+..+++|+ .|++++
T Consensus 106 ~L~~L~l~~n~--l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~ 165 (239)
T 2xwt_C 106 LLKFLGIFNTG--LKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165 (239)
T ss_dssp TCCEEEEEEEC--CCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred CCCEEeCCCCC--Ccc--ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence 77777777652 221 111 23456666 777766632322221 234455565 555543
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.61 E-value=2.3e-09 Score=91.86 Aligned_cols=132 Identities=18% Similarity=0.091 Sum_probs=92.3
Q ss_pred CCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHH
Q 007912 397 RPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLH 475 (585)
Q Consensus 397 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~ 475 (585)
.++|+.|+++++.. + +..+...+..+++|+.|++++ .+++. .....+++|++|++++|.+++. +.
T Consensus 23 ~~~L~~L~l~~n~l------~----~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~-~~ 88 (168)
T 2ell_A 23 PAAVRELVLDNCKS------N----DGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGG-LD 88 (168)
T ss_dssp TTSCSEEECCSCBC------B----TTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSC-CC
T ss_pred cccCCEEECCCCCC------C----hhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchH-HH
Confidence 37899999987643 1 111222256779999999987 44443 2223478999999999998764 23
Q ss_pred HHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCHHHH--HHHHhhCCCcEEEEecCC
Q 007912 476 HVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFEAC--KLLGQKMPRLNVEVIDES 542 (585)
Q Consensus 476 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~l~~~~~~l~~~~~~~~ 542 (585)
.+...+++|++|++++|.+++......+..+++|+.|++++|.++.... ......+|+++...+..+
T Consensus 89 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 89 MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp HHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred HHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 3335689999999999988774332356789999999999998765432 223457888887666554
No 112
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.61 E-value=3.5e-08 Score=94.75 Aligned_cols=33 Identities=9% Similarity=0.193 Sum_probs=16.7
Q ss_pred CCCcEEecccccchhHHHHHHhcCCCCceEEec
Q 007912 315 PKLQCLWVLDYIEDSGLEALAATCKDLRELRVF 347 (585)
Q Consensus 315 ~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~l~ 347 (585)
.++..+.+.+.+.......+...|++|+.+++.
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~ 234 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDIS 234 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECT
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECC
Confidence 344555555444444444444445556666555
No 113
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.60 E-value=2.2e-09 Score=98.75 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=60.8
Q ss_pred hhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcc
Q 007912 429 VQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLE 507 (585)
Q Consensus 429 ~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 507 (585)
+..+++|++|++++ .++.... .....+++|+.|++++|.++......+ ..+++|++|++++|.++.... ..+..++
T Consensus 103 ~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~ 179 (251)
T 3m19_A 103 FDHLTQLDKLYLGGNQLKSLPS-GVFDRLTKLKELRLNTNQLQSIPAGAF-DKLTNLQTLSLSTNQLQSVPH-GAFDRLG 179 (251)
T ss_dssp TTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCSCCCT-TTTTTCT
T ss_pred hcccCCCCEEEcCCCcCCCcCh-hHhccCCcccEEECcCCcCCccCHHHc-CcCcCCCEEECCCCcCCccCH-HHHhCCC
Confidence 45567788888876 3331111 112346778889998888765444333 667899999999997764332 1446788
Q ss_pred cCCEEEeecccCCHH
Q 007912 508 TMRSLWMSSCSVSFE 522 (585)
Q Consensus 508 ~L~~L~l~~~~i~~~ 522 (585)
+|+.|++++|+++..
T Consensus 180 ~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 180 KLQTITLFGNQFDCS 194 (251)
T ss_dssp TCCEEECCSCCBCTT
T ss_pred CCCEEEeeCCceeCC
Confidence 999999999987543
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.60 E-value=1.5e-08 Score=93.67 Aligned_cols=104 Identities=15% Similarity=0.110 Sum_probs=71.8
Q ss_pred hCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHH
Q 007912 396 NRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGL 474 (585)
Q Consensus 396 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 474 (585)
.+++|+.|+++++.......+ .. ++|+.|++++ .+++. .. ...+++|+.|++++|.+++..
T Consensus 83 ~l~~L~~L~L~~N~l~~l~~~-------------~~-~~L~~L~L~~N~l~~~--~~-l~~l~~L~~L~Ls~N~i~~~~- 144 (263)
T 1xeu_A 83 DLTKLEELSVNRNRLKNLNGI-------------PS-ACLSRLFLDNNELRDT--DS-LIHLKNLEILSIRNNKLKSIV- 144 (263)
T ss_dssp TCSSCCEEECCSSCCSCCTTC-------------CC-SSCCEEECCSSCCSBS--GG-GTTCTTCCEEECTTSCCCBCG-
T ss_pred cCCCCCEEECCCCccCCcCcc-------------cc-CcccEEEccCCccCCC--hh-hcCcccccEEECCCCcCCCCh-
Confidence 467777777766543211111 11 6788888877 44432 12 235678999999999987653
Q ss_pred HHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCHH
Q 007912 475 HHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFE 522 (585)
Q Consensus 475 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~ 522 (585)
. ...+++|++|++++|.+++. ..+..+++|+.|++++|+++..
T Consensus 145 -~-l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 145 -M-LGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -G-GGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEECC
T ss_pred -H-HccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCcccCC
Confidence 3 36789999999999988776 3567889999999999987543
No 115
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.56 E-value=1.2e-08 Score=93.91 Aligned_cols=107 Identities=21% Similarity=0.172 Sum_probs=55.8
Q ss_pred CCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCC
Q 007912 106 PWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCT 185 (585)
Q Consensus 106 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 185 (585)
++++.|+++++.+.......+ ..+++|++|+++++ .++... ...+..+++|++|++++|.+.......+ ..++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~ 107 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATF-RGLTKLTWLNLDYN-QLQTLS-AGVFDDLTELGTLGLANNQLASLPLGVF----DHLT 107 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTT----TTCT
T ss_pred CCCCEEEccCCCcCccCHhHh-cCcccCCEEECCCC-cCCccC-HhHhccCCcCCEEECCCCcccccChhHh----cccC
Confidence 467777777766554322222 24567777777765 222211 1122356777777777777664433222 2345
Q ss_pred cccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCC
Q 007912 186 SLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRA 222 (585)
Q Consensus 186 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 222 (585)
+|++|+++++. +.... ......+++|+.|+++++
T Consensus 108 ~L~~L~L~~N~--l~~~~-~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 108 QLDKLYLGGNQ--LKSLP-SGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp TCCEEECCSSC--CCCCC-TTTTTTCTTCCEEECCSS
T ss_pred CCCEEEcCCCc--CCCcC-hhHhccCCcccEEECcCC
Confidence 77777777652 22110 011234566666666655
No 116
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.53 E-value=9.3e-07 Score=75.85 Aligned_cols=125 Identities=11% Similarity=0.185 Sum_probs=79.2
Q ss_pred HHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhh---CCCCcEEecCC-CCCHHHHHHHHhh---cccc
Q 007912 387 NDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQH---CKDLRRLSLSG-LLTDRVFEYIGTY---AKKL 459 (585)
Q Consensus 387 ~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~L~~L~l~~-~~~~~~~~~l~~~---~~~L 459 (585)
+..+..+...-+.|++|+|++. ..+. ++|...++.. -..|+.|+|++ .++|.+...++.. .+.|
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~n-----n~ig----d~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL 100 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNM-----KRVS----KERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSL 100 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTC-----CSSC----HHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSC
T ss_pred HHHHHHHHhcCCCccEEECCCC-----CCCC----HHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCcc
Confidence 3445555555677888877532 1344 6665554433 34678888876 6777777666543 4568
Q ss_pred ceeeccccCCCHHHHHHHHhcC---CCCCeEEeeCC---CCChHH---HHHHHHhcccCCEEEeecccCC
Q 007912 460 EMLSVAFAGESDLGLHHVLSGC---DSLRKLEIMDC---PFGDKA---LLANAAKLETMRSLWMSSCSVS 520 (585)
Q Consensus 460 ~~L~l~~~~i~~~~~~~l~~~~---~~L~~L~l~~~---~~~~~~---~~~~~~~l~~L~~L~l~~~~i~ 520 (585)
++|+|++|.|++.|..+++..+ +.|++|++++| .+.+.+ +...+..-+.|+.|+++.+.+.
T Consensus 101 ~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 101 RVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp CEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred CeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 8888888888888777766553 45788888754 456654 3334455567777777766543
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.49 E-value=2.2e-07 Score=85.76 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=29.1
Q ss_pred CCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCC
Q 007912 105 YPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVED 171 (585)
Q Consensus 105 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~ 171 (585)
+++|++|+++++.+++.. .+ ..+++|++|+++++. ++... . +..+++|++|++++|.+.+
T Consensus 40 l~~L~~L~l~~n~i~~l~--~l-~~l~~L~~L~L~~N~-i~~~~--~-l~~l~~L~~L~L~~N~l~~ 99 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA--GM-QFFTNLKELHLSHNQ-ISDLS--P-LKDLTKLEELSVNRNRLKN 99 (263)
T ss_dssp HTTCSEEECTTSCCCCCT--TG-GGCTTCCEEECCSSC-CCCCG--G-GTTCSSCCEEECCSSCCSC
T ss_pred cCcCcEEECcCCCcccch--HH-hhCCCCCEEECCCCc-cCCCh--h-hccCCCCCEEECCCCccCC
Confidence 455666666665544321 11 234556666665542 22111 1 2355666666666665543
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.46 E-value=5e-09 Score=107.87 Aligned_cols=122 Identities=15% Similarity=0.113 Sum_probs=84.4
Q ss_pred CCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHH
Q 007912 398 PSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHH 476 (585)
Q Consensus 398 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~ 476 (585)
..|+.|+++++.. +.. .. +..+++|+.|++++ .++ .+......+++|+.|+|++|.++... .
T Consensus 441 ~~L~~L~Ls~n~l------~~l------p~-~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp--~ 503 (567)
T 1dce_A 441 ADVRVLHLAHKDL------TVL------CH-LEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVD--G 503 (567)
T ss_dssp TTCSEEECTTSCC------SSC------CC-GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCG--G
T ss_pred cCceEEEecCCCC------CCC------cC-ccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCCCc--c
Confidence 4688999876543 211 11 56778999999987 444 12222345788999999999987643 3
Q ss_pred HHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCHH--HHHHHHhhCCCcEEE
Q 007912 477 VLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFE--ACKLLGQKMPRLNVE 537 (585)
Q Consensus 477 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~--~~~~l~~~~~~l~~~ 537 (585)
+..+++|+.|++++|.++.......+..+++|+.|++++|+++.. ....+...+|++++.
T Consensus 504 -l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 504 -VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp -GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred -cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 377899999999999887652123567899999999999987542 334445567777653
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.44 E-value=2.5e-08 Score=95.76 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=27.0
Q ss_pred CCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCC
Q 007912 184 CTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAV 223 (585)
Q Consensus 184 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 223 (585)
.+++++|.+.+. +....+..+...+++|+.|+|+++.
T Consensus 24 ~~~l~~L~l~g~---i~~~~~~~l~~~l~~L~~LdLs~n~ 60 (329)
T 3sb4_A 24 ANSITHLTLTGK---LNAEDFRHLRDEFPSLKVLDISNAE 60 (329)
T ss_dssp HHHCSEEEEEEE---ECHHHHHHHHHSCTTCCEEEEEEEE
T ss_pred hCceeEEEEecc---ccHHHHHHHHHhhccCeEEecCcce
Confidence 447889998864 4556666665558889999998764
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.41 E-value=3.9e-08 Score=84.81 Aligned_cols=111 Identities=16% Similarity=0.081 Sum_probs=74.6
Q ss_pred CCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHH-
Q 007912 397 RPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGL- 474 (585)
Q Consensus 397 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~- 474 (585)
.++|+.|+++++..... ..+..+++|+.|++++ .++... ..+...+++|+.|++++|.+++...
T Consensus 41 ~~~L~~L~Ls~N~l~~~-------------~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~~~ 106 (176)
T 1a9n_A 41 LDQFDAIDFSDNEIRKL-------------DGFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLTELILTNNSLVELGDL 106 (176)
T ss_dssp TTCCSEEECCSSCCCEE-------------CCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTTCCEEECCSCCCCCGGGG
T ss_pred CCCCCEEECCCCCCCcc-------------cccccCCCCCEEECCCCcccccC-cchhhcCCCCCEEECCCCcCCcchhh
Confidence 45788888776543111 1245678889999887 444221 1223457889999999999866443
Q ss_pred HHHHhcCCCCCeEEeeCCCCChHH--HHHHHHhcccCCEEEeecccCCHH
Q 007912 475 HHVLSGCDSLRKLEIMDCPFGDKA--LLANAAKLETMRSLWMSSCSVSFE 522 (585)
Q Consensus 475 ~~l~~~~~~L~~L~l~~~~~~~~~--~~~~~~~l~~L~~L~l~~~~i~~~ 522 (585)
.. ...+++|++|++++|+++... ....+..+++|+.|++++|.+.+.
T Consensus 107 ~~-l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 107 DP-LASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp GG-GGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred Hh-hhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 23 367899999999999775432 123567899999999999976543
No 121
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.40 E-value=3.3e-06 Score=72.42 Aligned_cols=128 Identities=13% Similarity=0.100 Sum_probs=93.4
Q ss_pred chhHHHHHHccCCCCcEEEeccc-ccChHHHHHHHHhCC---CCcEEeecccCCCCHHHHHHH---HhcCCCCcEEEccc
Q 007912 94 VYPWIRAMAGGYPWLEELKLKRM-VVTDESLELIAKSFK---NFKVLVLSSCEGFSTHGLAAI---AADCKNLKELDLWE 166 (585)
Q Consensus 94 ~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~l~~l~~~~~---~L~~L~L~~~~~~~~~~l~~l---~~~~~~L~~L~l~~ 166 (585)
++..+..+...-+.|++|+|+++ .+.+.+...++..++ .|++|+|+++ .+++.+...+ ....+.|++|+|+.
T Consensus 29 v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 29 VESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp HHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCC
Confidence 56667777788889999999885 888888877776543 5999999887 6777765444 34558899999998
Q ss_pred CCCCCcccccccccCCCCCcccEEEeccccC-cCCHHH---HHHHHHhCCCCceEEeCCC
Q 007912 167 SDVEDPSGNWLSKFPDTCTSLVSLNIACLGS-EVSFSA---LERLVVRCPNLRTLRLNRA 222 (585)
Q Consensus 167 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~-~~~~~~---l~~l~~~~~~L~~L~l~~~ 222 (585)
|.+++.+...+.......+.|++|+++++.. .+.+.+ +.......+.|+.|+++.+
T Consensus 108 N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 108 NFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp SBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 8888888777777666677788888875533 456554 4444455677888887654
No 122
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.39 E-value=8.1e-08 Score=84.62 Aligned_cols=87 Identities=21% Similarity=0.293 Sum_probs=48.1
Q ss_pred hhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcc
Q 007912 429 VQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLE 507 (585)
Q Consensus 429 ~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 507 (585)
+..+++|+.|++++ .++. +......+++|+.|++++|.+++.. .+ ..+++|++|++++|.+++......+..++
T Consensus 66 ~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~l~--~~-~~l~~L~~L~l~~N~i~~~~~~~~l~~l~ 140 (198)
T 1ds9_A 66 LSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASLS--GI-EKLVNLRVLYMSNNKITNWGEIDKLAALD 140 (198)
T ss_dssp HHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCCHH--HH-HHHHHSSEEEESEEECCCHHHHHHHTTTT
T ss_pred cccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCcCC--cc-ccCCCCCEEECCCCcCCchhHHHHHhcCC
Confidence 34456666666655 2221 1122233456777777777665532 22 45566777777777666544323455666
Q ss_pred cCCEEEeecccCC
Q 007912 508 TMRSLWMSSCSVS 520 (585)
Q Consensus 508 ~L~~L~l~~~~i~ 520 (585)
+|++|++++|.++
T Consensus 141 ~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 141 KLEDLLLAGNPLY 153 (198)
T ss_dssp TCSEEEECSCHHH
T ss_pred CCCEEEecCCccc
Confidence 7777777776653
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.29 E-value=1.4e-07 Score=96.64 Aligned_cols=129 Identities=14% Similarity=0.019 Sum_probs=69.8
Q ss_pred CCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHH
Q 007912 374 KLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYI 452 (585)
Q Consensus 374 ~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l 452 (585)
+|+.|.+..+.++. +.. .+++|+.|+++++.... +. . .+++|+.|++++ .++. +..+
T Consensus 121 ~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~---lp----~--------~l~~L~~L~Ls~N~L~~--lp~l 178 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM--LPE---LPALLEYINADNNQLTM---LP----E--------LPTSLEVLSVRNNQLTF--LPEL 178 (571)
T ss_dssp TCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSC---CC----C--------CCTTCCEEECCSSCCSC--CCCC
T ss_pred CCCEEECCCCcCCC--CCC---cCccccEEeCCCCccCc---CC----C--------cCCCcCEEECCCCCCCC--cchh
Confidence 55555444444443 111 35677777776543211 11 0 346777777776 3332 1111
Q ss_pred HhhccccceeeccccCCCHHHH--HHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCHHHHHHHHh
Q 007912 453 GTYAKKLEMLSVAFAGESDLGL--HHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFEACKLLGQ 529 (585)
Q Consensus 453 ~~~~~~L~~L~l~~~~i~~~~~--~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~ 529 (585)
.++|+.|+|++|.|+.... ..+....+.|+.|++++|.++.. ...+..+++|+.|++++|+++......+..
T Consensus 179 ---~~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~l--p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 179 ---PESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHI--PENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp ---CTTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCCC--CGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred ---hCCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCcceec--CHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 2678888888887653221 00111122338888888877642 222345788888888888887766655543
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.28 E-value=1.8e-07 Score=80.63 Aligned_cols=110 Identities=13% Similarity=0.124 Sum_probs=48.7
Q ss_pred CCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCC
Q 007912 105 YPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTC 184 (585)
Q Consensus 105 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~ 184 (585)
.++|+.|++++|.++.. ..+ ..+++|+.|+++++ .++.. ...++..+++|++|++++|.+.+.+. +. ....+
T Consensus 41 ~~~L~~L~Ls~N~l~~~--~~l-~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~--~~-~l~~l 112 (176)
T 1a9n_A 41 LDQFDAIDFSDNEIRKL--DGF-PLLRRLKTLLVNNN-RICRI-GEGLDQALPDLTELILTNNSLVELGD--LD-PLASL 112 (176)
T ss_dssp TTCCSEEECCSSCCCEE--CCC-CCCSSCCEEECCSS-CCCEE-CSCHHHHCTTCCEEECCSCCCCCGGG--GG-GGGGC
T ss_pred CCCCCEEECCCCCCCcc--ccc-ccCCCCCEEECCCC-ccccc-CcchhhcCCCCCEEECCCCcCCcchh--hH-hhhcC
Confidence 34666666666655542 111 23455666666654 22211 01122355666666666665543221 00 11134
Q ss_pred CcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCC
Q 007912 185 TSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRA 222 (585)
Q Consensus 185 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 222 (585)
++|++|+++++...-....-..+...+++|+.|+++++
T Consensus 113 ~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 113 KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp TTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 45666666554211111111122344555555555444
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.27 E-value=1.9e-08 Score=90.23 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=69.8
Q ss_pred hCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHH
Q 007912 396 NRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGL 474 (585)
Q Consensus 396 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 474 (585)
.+++|+.|+|+++.... + ....+..+++|++|+|++ .++.. .......+++|+.|+|++|.++....
T Consensus 54 ~l~~L~~L~Ls~N~i~~---~--------~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l~~~~~ 121 (220)
T 2v9t_B 54 PYKKLRRIDLSNNQISE---L--------APDAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQLLLLNANKINCLRV 121 (220)
T ss_dssp TCTTCCEEECCSSCCCE---E--------CTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCCCCEEECCCCcCCC---c--------CHHHhhCCcCCCEEECCCCcCCcc-CHhHccCCCCCCEEECCCCCCCEeCH
Confidence 35677777776543210 1 011245677888888876 33311 11122346788999999888766544
Q ss_pred HHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccC
Q 007912 475 HHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSV 519 (585)
Q Consensus 475 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 519 (585)
..+ ..+++|++|++++|.++.... ..+..+++|+.|++++|++
T Consensus 122 ~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 122 DAF-QDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTT-TTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCE
T ss_pred HHc-CCCCCCCEEECCCCcCCEECH-HHHhCCCCCCEEEeCCCCc
Confidence 444 678899999999997764331 1345688999999999875
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.26 E-value=2.8e-08 Score=89.10 Aligned_cols=110 Identities=13% Similarity=0.137 Sum_probs=69.7
Q ss_pred hCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHH
Q 007912 396 NRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGL 474 (585)
Q Consensus 396 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 474 (585)
.+++|+.|++++..... +. ...+..+++|++|++++ .++..... ....+++|++|++++|.++....
T Consensus 55 ~l~~L~~L~L~~N~i~~---i~--------~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~ 122 (220)
T 2v70_A 55 KLPQLRKINFSNNKITD---IE--------EGAFEGASGVNEILLTSNRLENVQHK-MFKGLESLKTLMLRSNRITCVGN 122 (220)
T ss_dssp GCTTCCEEECCSSCCCE---EC--------TTTTTTCTTCCEEECCSSCCCCCCGG-GGTTCSSCCEEECTTSCCCCBCT
T ss_pred cCCCCCEEECCCCcCCE---EC--------HHHhCCCCCCCEEECCCCccCccCHh-HhcCCcCCCEEECCCCcCCeECH
Confidence 45677777776543210 10 11245677888888876 33322111 12346788888998888765544
Q ss_pred HHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccC
Q 007912 475 HHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSV 519 (585)
Q Consensus 475 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 519 (585)
..+ .++++|++|++++|.++.... ..+..+++|+.|++++|++
T Consensus 123 ~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 123 DSF-IGLSSVRLLSLYDNQITTVAP-GAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp TSS-TTCTTCSEEECTTSCCCCBCT-TTTTTCTTCCEEECCSCCE
T ss_pred hHc-CCCccCCEEECCCCcCCEECH-HHhcCCCCCCEEEecCcCC
Confidence 443 567899999999997765321 2455788999999999875
No 127
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.26 E-value=7.5e-08 Score=85.64 Aligned_cols=87 Identities=14% Similarity=0.129 Sum_probs=47.3
Q ss_pred hhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhccc
Q 007912 430 QHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLET 508 (585)
Q Consensus 430 ~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 508 (585)
..+++|++|++++ .++... ......+++|++|++++|.++......+ ..+++|++|++++|.++.... ..+..+++
T Consensus 73 ~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~ 149 (208)
T 2o6s_A 73 NKLTSLTYLNLSTNQLQSLP-NGVFDKLTQLKELALNTNQLQSLPDGVF-DKLTQLKDLRLYQNQLKSVPD-GVFDRLTS 149 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCSCCCT-TTTTTCTT
T ss_pred CCCCCcCEEECCCCcCCccC-HhHhcCccCCCEEEcCCCcCcccCHhHh-ccCCcCCEEECCCCccceeCH-HHhccCCC
Confidence 4456666666655 222111 0111235567777777776654332222 456777777777776553221 13455677
Q ss_pred CCEEEeecccC
Q 007912 509 MRSLWMSSCSV 519 (585)
Q Consensus 509 L~~L~l~~~~i 519 (585)
|+.|++++|.+
T Consensus 150 L~~L~l~~N~~ 160 (208)
T 2o6s_A 150 LQYIWLHDNPW 160 (208)
T ss_dssp CCEEECCSCCB
T ss_pred ccEEEecCCCe
Confidence 77777777754
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.25 E-value=1.3e-07 Score=85.37 Aligned_cols=133 Identities=10% Similarity=0.024 Sum_probs=89.9
Q ss_pred CCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHH
Q 007912 372 CPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFE 450 (585)
Q Consensus 372 ~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~ 450 (585)
.++|+.|.+..+.++...-.. ...+++|+.|+|+++.... +. ...+..+++|+.|++++ .++... .
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~N~l~~---i~--------~~~~~~l~~L~~L~Ls~N~l~~l~-~ 105 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGV-FDSLINLKELYLGSNQLGA---LP--------VGVFDSLTQLTVLDLGTNQLTVLP-S 105 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCC---CC--------TTTTTTCTTCCEEECCSSCCCCCC-T
T ss_pred CCCCCEEEcCCCccCccCHHH-hhCccCCcEEECCCCCCCC---cC--------hhhcccCCCcCEEECCCCcCCccC-h
Confidence 478999977767776432222 2357899999998764411 11 11256788999999987 333221 1
Q ss_pred HHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCC
Q 007912 451 YIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVS 520 (585)
Q Consensus 451 ~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 520 (585)
.....+++|+.|++++|.++... .. +..+++|++|++++|.++.... ..+..+++|+.|++.+|+++
T Consensus 106 ~~~~~l~~L~~L~Ls~N~l~~lp-~~-~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 106 AVFDRLVHLKELFMCCNKLTELP-RG-IERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCSCC-TT-GGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCBC
T ss_pred hHhCcchhhCeEeccCCcccccC-cc-cccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCCcc
Confidence 12235788999999999987332 12 2678999999999997764322 24567899999999999865
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.23 E-value=1.4e-07 Score=83.05 Aligned_cols=109 Identities=15% Similarity=0.103 Sum_probs=75.6
Q ss_pred hCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHH
Q 007912 396 NRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGL 474 (585)
Q Consensus 396 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~ 474 (585)
.+++|+.|+++++... .+ ...+..+++|+.|++++ .+++. ..+ ..+++|+.|++++|.+++...
T Consensus 68 ~l~~L~~L~l~~n~l~---~l---------~~~~~~~~~L~~L~L~~N~l~~l--~~~-~~l~~L~~L~l~~N~i~~~~~ 132 (198)
T 1ds9_A 68 GMENLRILSLGRNLIK---KI---------ENLDAVADTLEELWISYNQIASL--SGI-EKLVNLRVLYMSNNKITNWGE 132 (198)
T ss_dssp HHTTCCEEEEEEEEEC---SC---------SSHHHHHHHCSEEEEEEEECCCH--HHH-HHHHHSSEEEESEEECCCHHH
T ss_pred cCCCCCEEECCCCCcc---cc---------cchhhcCCcCCEEECcCCcCCcC--Ccc-ccCCCCCEEECCCCcCCchhH
Confidence 4678888888876431 11 11344567899999987 44442 233 346789999999999987554
Q ss_pred HHHHhcCCCCCeEEeeCCCCChHH---------HHHHHHhcccCCEEEeecccCCH
Q 007912 475 HHVLSGCDSLRKLEIMDCPFGDKA---------LLANAAKLETMRSLWMSSCSVSF 521 (585)
Q Consensus 475 ~~l~~~~~~L~~L~l~~~~~~~~~---------~~~~~~~l~~L~~L~l~~~~i~~ 521 (585)
......+++|++|++++|+++... ....+..+++|+.|+ ++.++.
T Consensus 133 ~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 133 IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred HHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 233478999999999999775541 223568899999886 666644
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.13 E-value=1.1e-07 Score=92.52 Aligned_cols=161 Identities=13% Similarity=0.032 Sum_probs=103.5
Q ss_pred cCCCCceEEeccCCCCCCCCCCCcchHHHHHHHhCCCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCC
Q 007912 337 TCKDLRELRVFPSEPFGDEPNVSLTEQGLVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYL 416 (585)
Q Consensus 337 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~ 416 (585)
..+.++.|++++ +.++......+...+++|+.|.+..+.++...-..+ ..+++|+.|+|+++.... +
T Consensus 37 ~~~~l~~L~Ls~---------N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-~~l~~L~~L~Ls~N~l~~---~ 103 (361)
T 2xot_A 37 LPSYTALLDLSH---------NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF-VPVPNLRYLDLSSNHLHT---L 103 (361)
T ss_dssp CCTTCSEEECCS---------SCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCE---E
T ss_pred CCCCCCEEECCC---------CCCCccChhhhhhcccccCEEECCCCcCCccChhhc-cCCCCCCEEECCCCcCCc---C
Confidence 356699999984 344433222122258899999777677764322222 357899999998754311 1
Q ss_pred CCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHH--HhcCCCCCeEEeeCCC
Q 007912 417 TLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHV--LSGCDSLRKLEIMDCP 493 (585)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l--~~~~~~L~~L~l~~~~ 493 (585)
....+..+++|+.|+|++ .++...... ...+++|+.|+|++|.++......+ ...+++|+.|++++|.
T Consensus 104 --------~~~~~~~l~~L~~L~L~~N~i~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 104 --------DEFLFSDLQALEVLLLYNNHIVVVDRNA-FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp --------CTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred --------CHHHhCCCcCCCEEECCCCcccEECHHH-hCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 111256789999999988 444321111 2346889999999999765433322 1458999999999998
Q ss_pred CChHHHHHHHHhccc--CCEEEeecccCC
Q 007912 494 FGDKALLANAAKLET--MRSLWMSSCSVS 520 (585)
Q Consensus 494 ~~~~~~~~~~~~l~~--L~~L~l~~~~i~ 520 (585)
++..... .+..++. ++.|++++|++.
T Consensus 175 l~~l~~~-~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 175 LKKLPLT-DLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCCHH-HHHHSCHHHHTTEECCSSCEE
T ss_pred CCccCHH-HhhhccHhhcceEEecCCCcc
Confidence 7754432 4456666 589999999864
No 131
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.12 E-value=1.9e-07 Score=83.66 Aligned_cols=132 Identities=14% Similarity=0.082 Sum_probs=89.9
Q ss_pred CCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHH
Q 007912 398 PSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHH 476 (585)
Q Consensus 398 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~ 476 (585)
++|+.|++++..... +. ...+..+++|+.|++++ .++......+ ..+++|++|+|++|.++......
T Consensus 32 ~~l~~L~l~~n~i~~---i~--------~~~~~~l~~L~~L~Ls~N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~ 99 (220)
T 2v9t_B 32 ETITEIRLEQNTIKV---IP--------PGAFSPYKKLRRIDLSNNQISELAPDAF-QGLRSLNSLVLYGNKITELPKSL 99 (220)
T ss_dssp TTCCEEECCSSCCCE---EC--------TTSSTTCTTCCEEECCSSCCCEECTTTT-TTCSSCCEEECCSSCCCCCCTTT
T ss_pred cCCCEEECCCCcCCC---cC--------HhHhhCCCCCCEEECCCCcCCCcCHHHh-hCCcCCCEEECCCCcCCccCHhH
Confidence 578888887653311 11 11256788999999988 4443222222 34688999999999987544333
Q ss_pred HHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCHHHHHHHHhhCCCcEEEEecCCCC
Q 007912 477 VLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFEACKLLGQKMPRLNVEVIDESGP 544 (585)
Q Consensus 477 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~ 544 (585)
+ .++++|++|++++|.++.... ..+..+++|+.|++++|.++......+ ..++.++...+.++++
T Consensus 100 f-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 100 F-EGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIAKGTF-SPLRAIQTMHLAQNPF 164 (220)
T ss_dssp T-TTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSCE
T ss_pred c-cCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEECHHHH-hCCCCCCEEEeCCCCc
Confidence 3 678999999999998765432 145678999999999998765443333 3578888877777744
No 132
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.11 E-value=1.4e-06 Score=77.32 Aligned_cols=84 Identities=17% Similarity=0.165 Sum_probs=47.9
Q ss_pred CCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHh
Q 007912 131 KNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVR 210 (585)
Q Consensus 131 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~ 210 (585)
++|++|+++++ .++.. ....+..+++|++|++++|.+.......+ ..+++|++|+++++. +... .......
T Consensus 28 ~~l~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~Ls~n~--l~~~-~~~~~~~ 98 (208)
T 2o6s_A 28 AQTTYLDLETN-SLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVF----NKLTSLTYLNLSTNQ--LQSL-PNGVFDK 98 (208)
T ss_dssp TTCSEEECCSS-CCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSC--CCCC-CTTTTTT
T ss_pred CCCcEEEcCCC-ccCcC-ChhhhcccccCcEEECCCCccCccChhhc----CCCCCcCEEECCCCc--CCcc-CHhHhcC
Confidence 56888888876 33311 11223467888888888887664432222 345688888887662 2211 0111244
Q ss_pred CCCCceEEeCCCC
Q 007912 211 CPNLRTLRLNRAV 223 (585)
Q Consensus 211 ~~~L~~L~l~~~~ 223 (585)
+++|++|+++++.
T Consensus 99 l~~L~~L~L~~N~ 111 (208)
T 2o6s_A 99 LTQLKELALNTNQ 111 (208)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccCCCEEEcCCCc
Confidence 6677777776653
No 133
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.11 E-value=7.1e-08 Score=93.88 Aligned_cols=176 Identities=14% Similarity=0.046 Sum_probs=106.8
Q ss_pred CEEEeecccCCchhHHHHHhcCCCCcEEecccc-cchhHHHHHHhcCCCCceEEeccCCCCCCCCCCCcchHHHHHHHhC
Q 007912 293 TTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY-IEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSLTEQGLVLVSEG 371 (585)
Q Consensus 293 ~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~~l~~~ 371 (585)
+.++++++.+..-. . .-.+.++.|+++++ +.......+...+++|+.|+++. +.++...-. ....
T Consensus 21 ~~l~c~~~~l~~iP--~--~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~---------N~i~~i~~~-~~~~ 86 (361)
T 2xot_A 21 NILSCSKQQLPNVP--Q--SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSH---------NHLNFISSE-AFVP 86 (361)
T ss_dssp TEEECCSSCCSSCC--S--SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCS---------SCCCEECTT-TTTT
T ss_pred CEEEeCCCCcCccC--c--cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCC---------CcCCccChh-hccC
Confidence 45666665533211 0 12246899999986 33221111212688999999984 334332211 1234
Q ss_pred CCCCceehhcccCCcHHHHHHHHhhCCCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHH
Q 007912 372 CPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFE 450 (585)
Q Consensus 372 ~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~ 450 (585)
+++|+.|++..+.++...... ...+++|+.|+|+++.... + ....+..+++|+.|+|++ .++.....
T Consensus 87 l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~i~~---~--------~~~~~~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 87 VPNLRYLDLSSNHLHTLDEFL-FSDLQALEVLLLYNNHIVV---V--------DRNAFEDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCE---E--------CTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred CCCCCEEECCCCcCCcCCHHH-hCCCcCCCEEECCCCcccE---E--------CHHHhCCcccCCEEECCCCcCCeeCHH
Confidence 889999977767776432111 2357999999998764311 1 011256789999999987 33332111
Q ss_pred HH--HhhccccceeeccccCCCHHHHHHHHhcCCC--CCeEEeeCCCCC
Q 007912 451 YI--GTYAKKLEMLSVAFAGESDLGLHHVLSGCDS--LRKLEIMDCPFG 495 (585)
Q Consensus 451 ~l--~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~--L~~L~l~~~~~~ 495 (585)
.+ ...+++|+.|+|++|.++......+ ..++. |+.|++++|++.
T Consensus 155 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~-~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDL-QKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp GTC----CTTCCEEECCSSCCCCCCHHHH-HHSCHHHHTTEECCSSCEE
T ss_pred HhcCcccCCcCCEEECCCCCCCccCHHHh-hhccHhhcceEEecCCCcc
Confidence 11 0346889999999999877665555 55666 589999999764
No 134
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.03 E-value=2.8e-06 Score=87.01 Aligned_cols=136 Identities=18% Similarity=0.188 Sum_probs=87.6
Q ss_pred CCCceEEEecCCCCCCCCCCCcCCCCCcchhHHHHHHccCCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCC
Q 007912 66 FPEVRSVELKGKPHFADFNLVPEGWGGYVYPWIRAMAGGYPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFS 145 (585)
Q Consensus 66 ~~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 145 (585)
..+++.|+++++. +.. +|.. -+++|+.|++++|.++. +. ..+++|+.|+++++ .++
T Consensus 58 ~~~L~~L~Ls~n~-L~~---lp~~--------------l~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N-~l~ 113 (571)
T 3cvr_A 58 INQFSELQLNRLN-LSS---LPDN--------------LPPQITVLEITQNALIS--LP---ELPASLEYLDACDN-RLS 113 (571)
T ss_dssp HTTCSEEECCSSC-CSC---CCSC--------------CCTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSS-CCS
T ss_pred cCCccEEEeCCCC-CCc---cCHh--------------HcCCCCEEECcCCCCcc--cc---cccCCCCEEEccCC-CCC
Confidence 3478999998753 222 2221 13679999999988773 22 35688999999886 333
Q ss_pred HHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCCh
Q 007912 146 THGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPL 225 (585)
Q Consensus 146 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 225 (585)
. +..+ ..+|++|++++|.+...+ . .+++|+.|+++++. ++. +.. .+++|+.|+++++. +
T Consensus 114 ~--ip~l---~~~L~~L~Ls~N~l~~lp-----~---~l~~L~~L~Ls~N~--l~~--lp~---~l~~L~~L~Ls~N~-L 172 (571)
T 3cvr_A 114 T--LPEL---PASLKHLDVDNNQLTMLP-----E---LPALLEYINADNNQ--LTM--LPE---LPTSLEVLSVRNNQ-L 172 (571)
T ss_dssp C--CCCC---CTTCCEEECCSSCCSCCC-----C---CCTTCCEEECCSSC--CSC--CCC---CCTTCCEEECCSSC-C
T ss_pred C--cchh---hcCCCEEECCCCcCCCCC-----C---cCccccEEeCCCCc--cCc--CCC---cCCCcCEEECCCCC-C
Confidence 2 2221 138999999999876522 1 46789999999773 322 111 46789999998875 2
Q ss_pred HHHHHHHhhCCCceEEcCccccCC
Q 007912 226 EKLAHLLRQAPQLVELGTGTYSAD 249 (585)
Q Consensus 226 ~~~~~~~~~~~~L~~L~l~~~~~~ 249 (585)
..++. +. ++|+.|+++++...
T Consensus 173 ~~lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 173 TFLPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp SCCCC-CC--TTCCEEECCSSCCS
T ss_pred CCcch-hh--CCCCEEECcCCCCC
Confidence 22333 22 77888888765544
No 135
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.98 E-value=4.3e-06 Score=75.32 Aligned_cols=84 Identities=19% Similarity=0.178 Sum_probs=49.0
Q ss_pred CCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHh
Q 007912 131 KNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVR 210 (585)
Q Consensus 131 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~ 210 (585)
++|+.|+++++. ++... ...+..+++|++|++++|.+.......+ ..+++|++|+++++. +... .......
T Consensus 40 ~~L~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~L~~N~l~~i~~~~~----~~l~~L~~L~Ls~N~--l~~l-~~~~~~~ 110 (229)
T 3e6j_A 40 TNAQILYLHDNQ-ITKLE-PGVFDSLINLKELYLGSNQLGALPVGVF----DSLTQLTVLDLGTNQ--LTVL-PSAVFDR 110 (229)
T ss_dssp TTCSEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTT----TTCTTCCEEECCSSC--CCCC-CTTTTTT
T ss_pred CCCCEEEcCCCc-cCccC-HHHhhCccCCcEEECCCCCCCCcChhhc----ccCCCcCEEECCCCc--CCcc-ChhHhCc
Confidence 678888888763 32211 1223467888888888888754433222 345688888888662 2211 0112234
Q ss_pred CCCCceEEeCCCC
Q 007912 211 CPNLRTLRLNRAV 223 (585)
Q Consensus 211 ~~~L~~L~l~~~~ 223 (585)
+++|+.|+++++.
T Consensus 111 l~~L~~L~Ls~N~ 123 (229)
T 3e6j_A 111 LVHLKELFMCCNK 123 (229)
T ss_dssp CTTCCEEECCSSC
T ss_pred chhhCeEeccCCc
Confidence 6777777776653
No 136
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.98 E-value=2.9e-06 Score=77.44 Aligned_cols=38 Identities=26% Similarity=0.423 Sum_probs=35.4
Q ss_pred CCCCCCCCHHHHHHHHhccCChHHHH-HHHHHhHHHHHhh
Q 007912 4 KMSYSSLPEDVLEHVFSFVQSDKDRN-VISLVCKSWYEIE 42 (585)
Q Consensus 4 ~~~i~~LP~ell~~If~~L~~~~~~~-~~~~Vcr~W~~~~ 42 (585)
.+.+..||+|++.+||++|| .++++ ++++|||+|++++
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp-~~~L~~r~~~VCk~Wr~l~ 86 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELP-ATELVQACRLVCLRWKELV 86 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSC-HHHHHHTGGGTCHHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCC-HHHHHHHHHHHhHHHHHHh
Confidence 45788999999999999999 78999 9999999999998
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.96 E-value=1.4e-06 Score=75.02 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=70.5
Q ss_pred CCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHH
Q 007912 398 PSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHH 476 (585)
Q Consensus 398 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~ 476 (585)
++|+.|++++..... +. ...+..+++|++|++++ .++.... .....+++|+.|++++|.++......
T Consensus 28 ~~l~~L~l~~n~l~~---~~--------~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~ 95 (177)
T 2o6r_A 28 SSATRLELESNKLQS---LP--------HGVFDKLTQLTKLSLSQNQIQSLPD-GVFDKLTKLTILYLHENKLQSLPNGV 95 (177)
T ss_dssp TTCSEEECCSSCCCC---CC--------TTTTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCcEEEeCCCcccE---eC--------HHHhcCcccccEEECCCCcceEeCh-hHccCCCccCEEECCCCCccccCHHH
Confidence 567777776543311 11 11245677888888876 3332111 11234678999999999877544333
Q ss_pred HHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCC
Q 007912 477 VLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVS 520 (585)
Q Consensus 477 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 520 (585)
+ ..+++|++|++++|.++.... .....+++|+.|++++|.++
T Consensus 96 ~-~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 96 F-DKLTQLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp T-TTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred h-hCCcccCEEECcCCcceEeCH-HHhcCCcccCEEEecCCCee
Confidence 3 568999999999997764321 23467899999999999864
No 138
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.94 E-value=5e-07 Score=80.90 Aligned_cols=130 Identities=14% Similarity=0.097 Sum_probs=52.5
Q ss_pred CCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCCc
Q 007912 107 WLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCTS 186 (585)
Q Consensus 107 ~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~ 186 (585)
.+++|+++++.++..........+++|++|+++++. ++... ...+..+++|++|++++|.+.......+. .+++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----~l~~ 106 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIE-EGAFEGASGVNEILLTSNRLENVQHKMFK----GLES 106 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGGGT----TCSS
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEEC-HHHhCCCCCCCEEECCCCccCccCHhHhc----CCcC
Confidence 345555555544332111111234555555555431 22111 01122455556666655555443322222 2345
Q ss_pred ccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHHHHHhhCCCceEEcCcc
Q 007912 187 LVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVELGTGT 245 (585)
Q Consensus 187 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 245 (585)
|++|+++++. +..... ..+..+++|+.|+++++.-....+..+..+++|+.|++++
T Consensus 107 L~~L~Ls~N~--l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 107 LKTLMLRSNR--ITCVGN-DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CCEEECTTSC--CCCBCT-TSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCc--CCeECH-hHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 5555555442 111000 0112345555555555431111123334455555555543
No 139
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.92 E-value=1.2e-07 Score=91.84 Aligned_cols=15 Identities=33% Similarity=0.377 Sum_probs=9.4
Q ss_pred cCCCCCEEEeecccC
Q 007912 288 VCSGLTTLNLSYATI 302 (585)
Q Consensus 288 ~~~~L~~L~L~~~~~ 302 (585)
.+++|+.|++++|.+
T Consensus 200 ~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 200 GASGPVILDISRTRI 214 (350)
T ss_dssp TEECCSEEECTTSCC
T ss_pred cCcccchhhcCCCCc
Confidence 456666666666653
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.81 E-value=2.9e-06 Score=74.02 Aligned_cols=107 Identities=16% Similarity=0.112 Sum_probs=70.2
Q ss_pred CCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHH
Q 007912 398 PSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHH 476 (585)
Q Consensus 398 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~ 476 (585)
++|+.|++++... +..+ ..+..+++|+.|++++ .++...... ...+++|+.|++++|.++......
T Consensus 31 ~~l~~L~L~~n~i------~~ip------~~~~~l~~L~~L~Ls~N~i~~i~~~~-f~~l~~L~~L~Ls~N~l~~i~~~~ 97 (193)
T 2wfh_A 31 RDVTELYLDGNQF------TLVP------KELSNYKHLTLIDLSNNRISTLSNQS-FSNMTQLLTLILSYNRLRCIPPRT 97 (193)
T ss_dssp TTCCEEECCSSCC------CSCC------GGGGGCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCBCCTTT
T ss_pred CCCCEEECCCCcC------chhH------HHhhcccCCCEEECCCCcCCEeCHhH-ccCCCCCCEEECCCCccCEeCHHH
Confidence 4677777765432 1111 1256678888888876 333221111 234678999999999877655444
Q ss_pred HHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccC
Q 007912 477 VLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSV 519 (585)
Q Consensus 477 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 519 (585)
+ .++++|++|++++|.++.... ..+..+++|+.|++++|++
T Consensus 98 f-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 98 F-DGLKSLRLLSLHGNDISVVPE-GAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp T-TTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCE
T ss_pred h-CCCCCCCEEECCCCCCCeeCh-hhhhcCccccEEEeCCCCe
Confidence 4 678999999999997764321 1355788999999999875
No 141
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.81 E-value=5.5e-06 Score=74.45 Aligned_cols=36 Identities=25% Similarity=0.376 Sum_probs=33.9
Q ss_pred CCCCCCHHHHHHHHhccCChHHHHHHHHHhHHHHHhh
Q 007912 6 SYSSLPEDVLEHVFSFVQSDKDRNVISLVCKSWYEIE 42 (585)
Q Consensus 6 ~i~~LP~ell~~If~~L~~~~~~~~~~~Vcr~W~~~~ 42 (585)
.|++||+||+.+||+||+ ++|++++++|||+||.++
T Consensus 4 ~l~~LP~ei~l~IlsfL~-p~DL~~l~~vcr~Wr~la 39 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLS-PHDLCQLGSTNHYWNETV 39 (312)
T ss_dssp HHHHSCHHHHHHHHHTSC-HHHHHHHHTTCHHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHh
Confidence 367899999999999999 899999999999999998
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.78 E-value=2e-06 Score=75.16 Aligned_cols=89 Identities=17% Similarity=0.129 Sum_probs=60.9
Q ss_pred hhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcc
Q 007912 429 VQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLE 507 (585)
Q Consensus 429 ~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 507 (585)
+..+++|++|++++ .++...... ...+++|++|++++|.++......+ .++++|++|++++|.++.... ..+..++
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~ 126 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNA-FEGASHIQELQLGENKIKEISNKMF-LGLHQLKTLNLYDNQISCVMP-GSFEHLN 126 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSCCCCEECSSSS-TTCTTCCEEECCSSCCCEECT-TSSTTCT
T ss_pred cccCCCCCEEECCCCCCCCcCHhH-cCCcccCCEEECCCCcCCccCHHHh-cCCCCCCEEECCCCcCCeeCH-HHhhcCC
Confidence 45677888888877 333221111 2346778999999888776554433 567899999999998765321 1345788
Q ss_pred cCCEEEeecccCC
Q 007912 508 TMRSLWMSSCSVS 520 (585)
Q Consensus 508 ~L~~L~l~~~~i~ 520 (585)
+|++|++++|.++
T Consensus 127 ~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 127 SLTSLNLASNPFN 139 (192)
T ss_dssp TCCEEECTTCCBC
T ss_pred CCCEEEeCCCCcc
Confidence 9999999999764
No 143
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.78 E-value=5.3e-07 Score=87.28 Aligned_cols=82 Identities=13% Similarity=0.160 Sum_probs=41.1
Q ss_pred CCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCc-ccccccccCCCCCcccEEEe-cccc-CcCCHHHHHHH
Q 007912 131 KNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDP-SGNWLSKFPDTCTSLVSLNI-ACLG-SEVSFSALERL 207 (585)
Q Consensus 131 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~~~~~L~~L~l-~~~~-~~~~~~~l~~l 207 (585)
+++++|+|+++ .++... ...+.++++|++|++++|.+... ....+ ..+++++++.+ .+.. ..+... .
T Consensus 30 ~~l~~L~Ls~N-~i~~i~-~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f----~~L~~l~~~l~~~~N~l~~l~~~----~ 99 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVF----SNLPKLHEIRIEKANNLLYINPE----A 99 (350)
T ss_dssp TTCSEEEEESC-CCSEEC-TTSSTTCTTCCEEEEECCTTCCEECTTSB----CSCTTCCEEEEEEETTCCEECTT----S
T ss_pred CCCCEEEccCC-cCCCcC-HHHHcCCCCCCEEECcCCCCCCccChhHh----hcchhhhhhhcccCCcccccCch----h
Confidence 46888888765 333211 11234678888888888875432 11112 23445554333 3221 011111 1
Q ss_pred HHhCCCCceEEeCCC
Q 007912 208 VVRCPNLRTLRLNRA 222 (585)
Q Consensus 208 ~~~~~~L~~L~l~~~ 222 (585)
...+++|++|+++++
T Consensus 100 f~~l~~L~~L~l~~n 114 (350)
T 4ay9_X 100 FQNLPNLQYLLISNT 114 (350)
T ss_dssp BCCCTTCCEEEEEEE
T ss_pred hhhcccccccccccc
Confidence 234567777777655
No 144
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.66 E-value=3.3e-06 Score=89.79 Aligned_cols=61 Identities=15% Similarity=0.154 Sum_probs=26.3
Q ss_pred ccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCC
Q 007912 456 AKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVS 520 (585)
Q Consensus 456 ~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 520 (585)
+++|+.|+|++|.++.. ... +..+++|++|+|++|.++.. ...+..+++|+.|++++|.++
T Consensus 269 l~~L~~L~Ls~N~l~~l-p~~-~~~l~~L~~L~L~~N~l~~l--p~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 269 LSNLRVLDLSHNRLTSL-PAE-LGSCFQLKYFYFFDNMVTTL--PWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp GTTCCEEECTTSCCSSC-CSS-GGGGTTCSEEECCSSCCCCC--CSSTTSCTTCCCEECTTSCCC
T ss_pred CCCCCEEeCcCCcCCcc-Chh-hcCCCCCCEEECCCCCCCcc--ChhhhcCCCccEEeCCCCccC
Confidence 44455555555554411 111 13345555555555544311 111334455555555555543
No 145
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.60 E-value=5.9e-05 Score=77.53 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=27.9
Q ss_pred CCCCCEEEeecccCCchhHHHHHhcCCCCcEEecccc-cch--hHHHHHHhcCCCCceEE
Q 007912 289 CSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDY-IED--SGLEALAATCKDLRELR 345 (585)
Q Consensus 289 ~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~--~~~~~l~~~~~~L~~L~ 345 (585)
+++|+.|++++|.+........+..+++|+.|+++++ +.. .....+...+|+|+.|+
T Consensus 507 l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 5566666666665433221122345666666666654 211 11223333566666664
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.59 E-value=2.1e-06 Score=74.90 Aligned_cols=109 Identities=10% Similarity=0.033 Sum_probs=77.2
Q ss_pred CCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEE
Q 007912 434 DLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSL 512 (585)
Q Consensus 434 ~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 512 (585)
+|++|++++ .++..........+++|+.|++++|.++......+ .++++|++|++++|.++..... .+..+++|++|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L 107 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF-EGASHIQELQLGENKIKEISNK-MFLGLHQLKTL 107 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSCCCCEECSS-SSTTCTTCCEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc-CCcccCCEEECCCCcCCccCHH-HhcCCCCCCEE
Confidence 788888877 33322111122457889999999999876544444 6789999999999988754321 34678999999
Q ss_pred EeecccCCHHHHHHHHhhCCCcEEEEecCCCCC
Q 007912 513 WMSSCSVSFEACKLLGQKMPRLNVEVIDESGPP 545 (585)
Q Consensus 513 ~l~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~ 545 (585)
++++|+++......+ ..++.++...+.++++.
T Consensus 108 ~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 108 NLYDNQISCVMPGSF-EHLNSLTSLNLASNPFN 139 (192)
T ss_dssp ECCSSCCCEECTTSS-TTCTTCCEEECTTCCBC
T ss_pred ECCCCcCCeeCHHHh-hcCCCCCEEEeCCCCcc
Confidence 999999865433333 35788888888877554
No 147
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.50 E-value=2.1e-05 Score=68.50 Aligned_cols=107 Identities=18% Similarity=0.056 Sum_probs=64.0
Q ss_pred CCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCC
Q 007912 106 PWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCT 185 (585)
Q Consensus 106 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 185 (585)
++|++|+++++.++... .....+++|+.|+++++ .++.... ..+..+++|++|++++|.+.......+. .++
T Consensus 31 ~~l~~L~L~~n~i~~ip--~~~~~l~~L~~L~Ls~N-~i~~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~----~l~ 102 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP--KELSNYKHLTLIDLSNN-RISTLSN-QSFSNMTQLLTLILSYNRLRCIPPRTFD----GLK 102 (193)
T ss_dssp TTCCEEECCSSCCCSCC--GGGGGCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTT----TCT
T ss_pred CCCCEEECCCCcCchhH--HHhhcccCCCEEECCCC-cCCEeCH-hHccCCCCCCEEECCCCccCEeCHHHhC----CCC
Confidence 57888888887766321 22235678888888765 2332111 1234678888888888877655433333 355
Q ss_pred cccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCC
Q 007912 186 SLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAV 223 (585)
Q Consensus 186 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 223 (585)
+|++|+++++. +.... ......+++|+.|+++++.
T Consensus 103 ~L~~L~L~~N~--l~~~~-~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 103 SLRLLSLHGND--ISVVP-EGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TCCEEECCSSC--CCBCC-TTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCC--CCeeC-hhhhhcCccccEEEeCCCC
Confidence 88888888663 22110 1123346778888887653
No 148
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.50 E-value=1.6e-05 Score=68.27 Aligned_cols=108 Identities=15% Similarity=0.140 Sum_probs=58.6
Q ss_pred CCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCcccccccccCCCCC
Q 007912 106 PWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFPDTCT 185 (585)
Q Consensus 106 ~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~ 185 (585)
++|++|+++++.++..... ....+++|++|+++++ .++.. ....+..+++|++|++++|.+.......+ ..++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~----~~l~ 100 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHG-VFDKLTQLTKLSLSQN-QIQSL-PDGVFDKLTKLTILYLHENKLQSLPNGVF----DKLT 100 (177)
T ss_dssp TTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT----TTCT
T ss_pred CCCcEEEeCCCcccEeCHH-HhcCcccccEEECCCC-cceEe-ChhHccCCCccCEEECCCCCccccCHHHh----hCCc
Confidence 5677777777665532111 1124567777777765 23211 11122366778888888777664433222 2345
Q ss_pred cccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCC
Q 007912 186 SLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAV 223 (585)
Q Consensus 186 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 223 (585)
+|++|+++++. +... .......+++|++|+++++.
T Consensus 101 ~L~~L~l~~N~--l~~~-~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 101 QLKELALDTNQ--LKSV-PDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TCCEEECCSSC--CSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred ccCEEECcCCc--ceEe-CHHHhcCCcccCEEEecCCC
Confidence 77777777652 2211 11123446777777776654
No 149
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.48 E-value=4e-05 Score=81.51 Aligned_cols=113 Identities=20% Similarity=0.132 Sum_probs=64.8
Q ss_pred HHhcCCCCcEEEcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHHHH
Q 007912 152 IAADCKNLKELDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHL 231 (585)
Q Consensus 152 l~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~ 231 (585)
.+..+++|+.|++++|.+...... +. .+++|++|+++++. +. .+..-+..+++|+.|+|+++. +..++..
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~-~~----~l~~L~~L~Ls~N~--l~--~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~ 288 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISAN-IF----KYDFLTRLYLNGNS--LT--ELPAEIKNLSNLRVLDLSHNR-LTSLPAE 288 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGG-GG----GCCSCSCCBCTTSC--CS--CCCGGGGGGTTCCEEECTTSC-CSSCCSS
T ss_pred hhccCCCCcEEECCCCCCCCCChh-hc----CCCCCCEEEeeCCc--Cc--ccChhhhCCCCCCEEeCcCCc-CCccChh
Confidence 344678888888888876643221 11 35678888888663 32 111223556788888887765 2244444
Q ss_pred HhhCCCceEEcCccccCCCCchhhhhhhhhhhcccccccccCccccCcCchhhHhhcCCCCCEEEeecccCCch
Q 007912 232 LRQAPQLVELGTGTYSADLRPDIFSNLAGAFSGCKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYATIQSP 305 (585)
Q Consensus 232 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~ 305 (585)
+..+++|+.|+++++... .++..+..+++|+.|+|++|.+...
T Consensus 289 ~~~l~~L~~L~L~~N~l~-------------------------------~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNMVT-------------------------------TLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp GGGGTTCSEEECCSSCCC-------------------------------CCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred hcCCCCCCEEECCCCCCC-------------------------------ccChhhhcCCCccEEeCCCCccCCC
Confidence 555666666666443221 1111233578888899988886543
No 150
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.48 E-value=3e-05 Score=78.19 Aligned_cols=41 Identities=29% Similarity=0.401 Sum_probs=36.9
Q ss_pred CcCCCCCCCCHHHHHHHHhccCChHHHHHHHHHhHHHHHhhc
Q 007912 2 LKKMSYSSLPEDVLEHVFSFVQSDKDRNVISLVCKSWYEIER 43 (585)
Q Consensus 2 ~~~~~i~~LP~ell~~If~~L~~~~~~~~~~~Vcr~W~~~~~ 43 (585)
++++.|..||+|++.+||+||+ .++++++++|||+|++++.
T Consensus 10 ~~~d~~~~lp~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~ 50 (464)
T 3v7d_B 10 LKRDLITSLPFEISLKIFNYLQ-FEDIINSLGVSQNWNKIIR 50 (464)
T ss_dssp CCCCHHHHSCHHHHHHHHTTSC-HHHHHHHHTTCHHHHHHHT
T ss_pred cccCChHHCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHc
Confidence 4566688899999999999999 8899999999999999873
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.44 E-value=6.1e-06 Score=81.22 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=7.0
Q ss_pred ccCCCCcEEEecc
Q 007912 103 GGYPWLEELKLKR 115 (585)
Q Consensus 103 ~~~~~L~~L~l~~ 115 (585)
..|.+|+++.|..
T Consensus 68 ~~c~~L~~i~lp~ 80 (394)
T 4fs7_A 68 QGCRKVTEIKIPS 80 (394)
T ss_dssp TTCTTEEEEECCT
T ss_pred hCCCCceEEEeCC
Confidence 3455566666543
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.40 E-value=0.00012 Score=66.51 Aligned_cols=82 Identities=15% Similarity=0.236 Sum_probs=44.6
Q ss_pred hhccccceeeccccCCCHH-HHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCH------HHHHH
Q 007912 454 TYAKKLEMLSVAFAGESDL-GLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSF------EACKL 526 (585)
Q Consensus 454 ~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~------~~~~~ 526 (585)
..+++|+.|+|++|.+++. ++..++..+++|+.|+|++|.+++..-...+..+ +|++|++++|.++. .....
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 4456667777776666442 2222334567777777777766654211111222 67777777777643 22334
Q ss_pred HHhhCCCcEE
Q 007912 527 LGQKMPRLNV 536 (585)
Q Consensus 527 l~~~~~~l~~ 536 (585)
+...+|+++.
T Consensus 246 il~~~P~L~~ 255 (267)
T 3rw6_A 246 IRERFPKLLR 255 (267)
T ss_dssp HHHHCTTCCE
T ss_pred HHHHCcccCe
Confidence 4556776543
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.35 E-value=1.7e-05 Score=67.80 Aligned_cols=85 Identities=13% Similarity=0.084 Sum_probs=55.0
Q ss_pred CCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCE
Q 007912 433 KDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRS 511 (585)
Q Consensus 433 ~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 511 (585)
++|+.|++++ .++.... .....+++|+.|+|++|.++......+ ..+++|++|++++|.++.... ..+..+++|+.
T Consensus 33 ~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~-~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~ 109 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEP-GVFDHLVNLQQLYFNSNKLTAIPTGVF-DKLTQLTQLDLNDNHLKSIPR-GAFDNLKSLTH 109 (174)
T ss_dssp TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCT-TTTTTCTTCSE
T ss_pred CCCcEEEeCCCCccccCH-HHhcCCcCCCEEECCCCCCCccChhHh-CCcchhhEEECCCCccceeCH-HHhccccCCCE
Confidence 5677777766 3222111 112345678888888888765433222 567899999999997764321 13567889999
Q ss_pred EEeecccCC
Q 007912 512 LWMSSCSVS 520 (585)
Q Consensus 512 L~l~~~~i~ 520 (585)
|++++|++.
T Consensus 110 L~L~~N~~~ 118 (174)
T 2r9u_A 110 IYLYNNPWD 118 (174)
T ss_dssp EECCSSCBC
T ss_pred EEeCCCCcc
Confidence 999999864
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.35 E-value=1.7e-05 Score=67.56 Aligned_cols=85 Identities=13% Similarity=0.076 Sum_probs=55.5
Q ss_pred CCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCE
Q 007912 433 KDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRS 511 (585)
Q Consensus 433 ~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 511 (585)
++|+.|++++ .++...... ...+++|+.|+|++|.++......+ .++++|++|++++|.++.... ..+..+++|+.
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~f-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~ 106 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGV-FDRLTQLTRLDLDNNQLTVLPAGVF-DKLTQLTQLSLNDNQLKSIPR-GAFDNLKSLTH 106 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTT-TTTCTTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCE
T ss_pred CCCcEEEcCCCcCCccChhh-hcCcccCCEEECCCCCcCccChhhc-cCCCCCCEEECCCCccCEeCH-HHhcCCCCCCE
Confidence 4677777766 322211111 1245678888888888765443333 668899999999997764321 13567889999
Q ss_pred EEeecccCC
Q 007912 512 LWMSSCSVS 520 (585)
Q Consensus 512 L~l~~~~i~ 520 (585)
|++++|+++
T Consensus 107 L~L~~N~~~ 115 (170)
T 3g39_A 107 IWLLNNPWD 115 (170)
T ss_dssp EECCSSCBC
T ss_pred EEeCCCCCC
Confidence 999999864
No 155
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.32 E-value=5.7e-05 Score=75.43 Aligned_cols=41 Identities=32% Similarity=0.718 Sum_probs=37.4
Q ss_pred CCcCCCCCCCCHH----HHHHHHhccCChHHHHHHHHHhHHHHHhh
Q 007912 1 MLKKMSYSSLPED----VLEHVFSFVQSDKDRNVISLVCKSWYEIE 42 (585)
Q Consensus 1 ~~~~~~i~~LP~e----ll~~If~~L~~~~~~~~~~~Vcr~W~~~~ 42 (585)
+++++.|..||+| ++.+||+||+ .+++.++++|||+|++++
T Consensus 5 ~~~~d~~~~lp~e~~~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~ 49 (435)
T 1p22_A 5 MLQRDFITALPARGLDHIAENILSYLD-AKSLCAAELVCKEWYRVT 49 (435)
T ss_dssp CSCCCHHHHTGGGTCHHHHHHHHTTCC-HHHHHHHHHHCHHHHHHH
T ss_pred hhhcChHHHCCcchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHh
Confidence 3566778889999 9999999999 889999999999999988
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.30 E-value=4.4e-05 Score=74.78 Aligned_cols=60 Identities=8% Similarity=0.188 Sum_probs=28.1
Q ss_pred hhhCCCCcEEecCCCCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCC
Q 007912 429 VQHCKDLRRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDC 492 (585)
Q Consensus 429 ~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~ 492 (585)
+..|++|+.+.+.+.+...+-.. ...|++|+.+.|..+ ++..+-.++ .+| +|+.|++.++
T Consensus 296 F~~c~~L~~l~l~~~i~~I~~~a-F~~c~~L~~l~lp~~-l~~I~~~aF-~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 296 LEGCPKLARFEIPESIRILGQGL-LGGNRKVTQLTIPAN-VTQINFSAF-NNT-GIKEVKVEGT 355 (401)
T ss_dssp TTTCTTCCEECCCTTCCEECTTT-TTTCCSCCEEEECTT-CCEECTTSS-SSS-CCCEEEECCS
T ss_pred hhCCccCCeEEeCCceEEEhhhh-hcCCCCccEEEECcc-ccEEcHHhC-CCC-CCCEEEEcCC
Confidence 45666777776654222111111 123455666666433 322222222 445 6666666665
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.26 E-value=0.00025 Score=64.42 Aligned_cols=82 Identities=20% Similarity=0.168 Sum_probs=48.0
Q ss_pred hhCCCCcEEecCC-CCCH-HHHHHHHhhccccceeeccccCCCHH-HHHHHHhcCCCCCeEEeeCCCCCh------HHHH
Q 007912 430 QHCKDLRRLSLSG-LLTD-RVFEYIGTYAKKLEMLSVAFAGESDL-GLHHVLSGCDSLRKLEIMDCPFGD------KALL 500 (585)
Q Consensus 430 ~~~~~L~~L~l~~-~~~~-~~~~~l~~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~~L~~L~l~~~~~~~------~~~~ 500 (585)
..+|+|+.|+|++ .++. .++..+...+++|+.|+|++|.+++. .+..+ .++ +|++|++++|+++. .-..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l-~~l-~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI-KGL-KLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGG-TTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhc-ccC-CcceEEccCCcCccccCcchhHHH
Confidence 4455555555555 2222 11222334566777777777777554 23332 333 78888888887764 2233
Q ss_pred HHHHhcccCCEEE
Q 007912 501 ANAAKLETMRSLW 513 (585)
Q Consensus 501 ~~~~~l~~L~~L~ 513 (585)
.+...+|+|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 4677888888875
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.19 E-value=1.1e-05 Score=79.46 Aligned_cols=56 Identities=13% Similarity=0.280 Sum_probs=26.5
Q ss_pred ccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCC--CCChHHHHHHHHhcccCCEEEeecc
Q 007912 456 AKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDC--PFGDKALLANAAKLETMRSLWMSSC 517 (585)
Q Consensus 456 ~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~--~~~~~~~~~~~~~l~~L~~L~l~~~ 517 (585)
|.+|+.+.|..+ ++..+-.++ .+|.+|+.+++..+ .+.+. ...+|++|+.+++..+
T Consensus 319 c~~L~~i~lp~~-v~~I~~~aF-~~c~~L~~i~lp~~l~~I~~~----aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 319 CTSLVSIDLPYL-VEEIGKRSF-RGCTSLSNINFPLSLRKIGAN----AFQGCINLKKVELPKR 376 (394)
T ss_dssp CTTCCEECCCTT-CCEECTTTT-TTCTTCCEECCCTTCCEECTT----TBTTCTTCCEEEEEGG
T ss_pred CCCCCEEEeCCc-ccEEhHHhc-cCCCCCCEEEECccccEehHH----HhhCCCCCCEEEECCC
Confidence 445555555322 222222222 45666666666544 12221 2345666666666544
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.16 E-value=5.5e-05 Score=74.13 Aligned_cols=61 Identities=10% Similarity=0.101 Sum_probs=32.2
Q ss_pred hhhCCCCcEEecCCCCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcC-CCCCeEEeeCC
Q 007912 429 VQHCKDLRRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGC-DSLRKLEIMDC 492 (585)
Q Consensus 429 ~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~-~~L~~L~l~~~ 492 (585)
+.+|.+|+.+.+...++..+-..+ ..| +|+.+.+.++.+....-..+ .++ .+++.|++..+
T Consensus 319 F~~c~~L~~l~lp~~l~~I~~~aF-~~~-~L~~l~l~~n~~~~l~~~~F-~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 319 LGGNRKVTQLTIPANVTQINFSAF-NNT-GIKEVKVEGTTPPQVFEKVW-YGFPDDITVIRVPAE 380 (401)
T ss_dssp TTTCCSCCEEEECTTCCEECTTSS-SSS-CCCEEEECCSSCCBCCCSSC-CCSCTTCCEEEECGG
T ss_pred hcCCCCccEEEECccccEEcHHhC-CCC-CCCEEEEcCCCCcccccccc-cCCCCCccEEEeCHH
Confidence 566788888888654332221122 235 78888888776432111111 233 24566666544
No 160
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.15 E-value=0.00023 Score=71.25 Aligned_cols=39 Identities=26% Similarity=0.437 Sum_probs=36.3
Q ss_pred cCCCCCCCCHHHHHHHHhccCChHHHHHHHHHhHHHHHhh
Q 007912 3 KKMSYSSLPEDVLEHVFSFVQSDKDRNVISLVCKSWYEIE 42 (585)
Q Consensus 3 ~~~~i~~LP~ell~~If~~L~~~~~~~~~~~Vcr~W~~~~ 42 (585)
..+.+..||+|++.+||+||+ .+++.++++|||+|++++
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~-~~~l~~~~~v~~~~~~~~ 53 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLE-PKDLLQAAQTCRYWRILA 53 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSC-HHHHHHHTTSCHHHHHHH
T ss_pred cCChhHHCCHHHHHHHHHhCC-HHHHHHHHHHhHHHHhhc
Confidence 456789999999999999999 889999999999999987
No 161
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.01 E-value=0.00021 Score=60.67 Aligned_cols=85 Identities=16% Similarity=0.118 Sum_probs=55.4
Q ss_pred CCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHH
Q 007912 398 PSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHH 476 (585)
Q Consensus 398 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~ 476 (585)
++|+.|+|++..... +. ...+..+++|++|++++ .++... ......+++|++|+|++|.++......
T Consensus 30 ~~l~~L~L~~N~i~~---~~--------~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~l~~~~~~~ 97 (170)
T 3g39_A 30 TTTQVLYLYDNQITK---LE--------PGVFDRLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDNQLKSIPRGA 97 (170)
T ss_dssp TTCSEEECCSSCCCC---CC--------TTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCcEEEcCCCcCCc---cC--------hhhhcCcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCCccCEeCHHH
Confidence 567788777654311 10 11245678899999877 333211 112245678999999999986544433
Q ss_pred HHhcCCCCCeEEeeCCCCC
Q 007912 477 VLSGCDSLRKLEIMDCPFG 495 (585)
Q Consensus 477 l~~~~~~L~~L~l~~~~~~ 495 (585)
+ ..+++|++|++++|+++
T Consensus 98 ~-~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 98 F-DNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp T-TTCTTCCEEECCSSCBC
T ss_pred h-cCCCCCCEEEeCCCCCC
Confidence 3 67899999999999765
No 162
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.97 E-value=0.00023 Score=60.62 Aligned_cols=85 Identities=15% Similarity=0.128 Sum_probs=55.8
Q ss_pred CCCceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC-CCCHHHHHHHHhhccccceeeccccCCCHHHHHH
Q 007912 398 PSMIRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHH 476 (585)
Q Consensus 398 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~ 476 (585)
++|+.|+|++..... +. ...+..+++|+.|+|++ .++... ......+++|+.|+|++|.++......
T Consensus 33 ~~L~~L~Ls~N~l~~---~~--------~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~l~~l~~~~ 100 (174)
T 2r9u_A 33 TDKQRLWLNNNQITK---LE--------PGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNHLKSIPRGA 100 (174)
T ss_dssp TTCSEEECCSSCCCC---CC--------TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCcEEEeCCCCccc---cC--------HHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCccceeCHHH
Confidence 578888887654311 10 11255678899999987 333211 112234678999999999987544333
Q ss_pred HHhcCCCCCeEEeeCCCCC
Q 007912 477 VLSGCDSLRKLEIMDCPFG 495 (585)
Q Consensus 477 l~~~~~~L~~L~l~~~~~~ 495 (585)
+ ..+++|++|++++|++.
T Consensus 101 ~-~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 101 F-DNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp T-TTCTTCSEEECCSSCBC
T ss_pred h-ccccCCCEEEeCCCCcc
Confidence 3 67899999999999765
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.44 E-value=0.00074 Score=66.23 Aligned_cols=10 Identities=20% Similarity=0.451 Sum_probs=6.0
Q ss_pred CCCCEEEeec
Q 007912 290 SGLTTLNLSY 299 (585)
Q Consensus 290 ~~L~~L~L~~ 299 (585)
.+|+.+.+..
T Consensus 182 ~~l~~i~ip~ 191 (394)
T 4gt6_A 182 TALTQIHIPA 191 (394)
T ss_dssp CCCSEEEECT
T ss_pred cceeEEEECC
Confidence 4566666654
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.43 E-value=0.00024 Score=68.40 Aligned_cols=61 Identities=13% Similarity=0.118 Sum_probs=28.8
Q ss_pred ccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccC
Q 007912 456 AKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSV 519 (585)
Q Consensus 456 ~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 519 (585)
+++|+.|+|++|.++......+ .++++|++|+|++|.++.... .....++ |+.|++.+|.+
T Consensus 55 l~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~-~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 55 LGELRNLTIVKSGLRFVAPDAF-HFTPRLSRLNLSFNALESLSW-KTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp CCCCSEEECCSSCCCEECTTGG-GSCSCCCEEECCSSCCSCCCS-TTTCSCC-CCEEECCSSCC
T ss_pred ccCCCEEECCCCccceeCHHHh-cCCcCCCEEeCCCCccceeCH-HHcccCC-ceEEEeeCCCc
Confidence 4455555555555544332222 445666666666665442110 0112222 66666666554
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.16 E-value=0.0028 Score=62.02 Aligned_cols=83 Identities=12% Similarity=0.221 Sum_probs=47.4
Q ss_pred hhhCCCCcEEecCCCCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCC--CCChHHHHHHHHhc
Q 007912 429 VQHCKDLRRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDC--PFGDKALLANAAKL 506 (585)
Q Consensus 429 ~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~--~~~~~~~~~~~~~l 506 (585)
+..|++|+.+.+...++..+-. ....|.+|+.+.|..+ ++..+-.++ .+|.+|+.+.+..+ .+.+. ...+|
T Consensus 284 F~~c~~L~~i~l~~~i~~I~~~-aF~~c~~L~~i~lp~~-v~~I~~~aF-~~C~~L~~i~ip~sv~~I~~~----aF~~C 356 (394)
T 4gt6_A 284 FMNCPALQDIEFSSRITELPES-VFAGCISLKSIDIPEG-ITQILDDAF-AGCEQLERIAIPSSVTKIPES----AFSNC 356 (394)
T ss_dssp TTTCTTCCEEECCTTCCEECTT-TTTTCTTCCEEECCTT-CCEECTTTT-TTCTTCCEEEECTTCCBCCGG----GGTTC
T ss_pred cccccccccccCCCcccccCce-eecCCCCcCEEEeCCc-ccEehHhHh-hCCCCCCEEEECcccCEEhHh----HhhCC
Confidence 4566777777776532211111 1234667777777643 332222333 56788888888655 33333 34577
Q ss_pred ccCCEEEeeccc
Q 007912 507 ETMRSLWMSSCS 518 (585)
Q Consensus 507 ~~L~~L~l~~~~ 518 (585)
.+|+.+++.++.
T Consensus 357 ~~L~~i~~~~~~ 368 (394)
T 4gt6_A 357 TALNNIEYSGSR 368 (394)
T ss_dssp TTCCEEEESSCH
T ss_pred CCCCEEEECCce
Confidence 888888877764
No 166
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.20 E-value=0.0033 Score=60.34 Aligned_cols=63 Identities=19% Similarity=0.133 Sum_probs=46.5
Q ss_pred cccceeeccc-cCCCHHHHHHHHhcCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCH
Q 007912 457 KKLEMLSVAF-AGESDLGLHHVLSGCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSF 521 (585)
Q Consensus 457 ~~L~~L~l~~-~~i~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~ 521 (585)
++|+.|+|++ |.++......+ .++++|+.|+|++|.++.... ..+.++++|+.|+|++|+++.
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~ 94 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDL-RGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNLSFNALES 94 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGS-CSCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEECCSSCCSC
T ss_pred CCeeEEEccCCCCCCCcChhHh-ccccCCCEEECCCCccceeCH-HHhcCCcCCCEEeCCCCccce
Confidence 4577777775 66655443333 678999999999998875331 245689999999999998753
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=77.16 E-value=0.76 Score=36.25 Aligned_cols=35 Identities=14% Similarity=0.070 Sum_probs=15.5
Q ss_pred ccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCCC
Q 007912 458 KLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDCP 493 (585)
Q Consensus 458 ~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~~ 493 (585)
+|+.|+|++|.|+......+ ..+++|+.|+|++|+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f-~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLL-DALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTG-GGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhh-hhccccCEEEecCCC
Confidence 34455555554433222222 344555555555553
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=75.39 E-value=0.41 Score=46.19 Aligned_cols=82 Identities=10% Similarity=0.157 Sum_probs=42.1
Q ss_pred hhhCCCCcEEecCCCCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcCCCCCeEEeeCC--CCChHHHHHHHHhc
Q 007912 429 VQHCKDLRRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGCDSLRKLEIMDC--PFGDKALLANAAKL 506 (585)
Q Consensus 429 ~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~~~L~~L~l~~~--~~~~~~~~~~~~~l 506 (585)
+..|.+|+.+.+...+...+.. ....|.+|+.+.+.++.++..+-.++ .+|.+|+.+.+..+ .+.+. ...+|
T Consensus 259 F~~~~~l~~i~l~~~i~~i~~~-aF~~c~~L~~i~l~~~~i~~I~~~aF-~~c~~L~~i~lp~~l~~I~~~----aF~~C 332 (379)
T 4h09_A 259 LQNCTALKTLNFYAKVKTVPYL-LCSGCSNLTKVVMDNSAIETLEPRVF-MDCVKLSSVTLPTALKTIQVY----AFKNC 332 (379)
T ss_dssp TTTCTTCCEEEECCCCSEECTT-TTTTCTTCCEEEECCTTCCEECTTTT-TTCTTCCEEECCTTCCEECTT----TTTTC
T ss_pred cceeehhccccccccceecccc-ccccccccccccccccccceehhhhh-cCCCCCCEEEcCccccEEHHH----HhhCC
Confidence 3455666666664422211111 11345667777766655443333333 56777777777654 22222 23466
Q ss_pred ccCCEEEeec
Q 007912 507 ETMRSLWMSS 516 (585)
Q Consensus 507 ~~L~~L~l~~ 516 (585)
.+|+.+.+..
T Consensus 333 ~~L~~i~ip~ 342 (379)
T 4h09_A 333 KALSTISYPK 342 (379)
T ss_dssp TTCCCCCCCT
T ss_pred CCCCEEEECC
Confidence 6777766644
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=62.81 E-value=2.6 Score=40.43 Aligned_cols=123 Identities=14% Similarity=0.255 Sum_probs=60.3
Q ss_pred ccCCCCcEEEeccc--ccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEEEcccCCCCCccccccccc
Q 007912 103 GGYPWLEELKLKRM--VVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKF 180 (585)
Q Consensus 103 ~~~~~L~~L~l~~~--~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 180 (585)
..+.+|+.+.+... .+.+.. ...+.+|+.+.+... ++..+- ..+..|.+|+.+.+... +...+. ..
T Consensus 214 ~~~~~l~~i~~~~~~~~i~~~~----f~~~~~L~~i~lp~~--v~~I~~-~aF~~~~~l~~i~l~~~-i~~i~~----~a 281 (379)
T 4h09_A 214 SYGKNLKKITITSGVTTLGDGA----FYGMKALDEIAIPKN--VTSIGS-FLLQNCTALKTLNFYAK-VKTVPY----LL 281 (379)
T ss_dssp TTCSSCSEEECCTTCCEECTTT----TTTCSSCCEEEECTT--CCEECT-TTTTTCTTCCEEEECCC-CSEECT----TT
T ss_pred ccccccceeeeccceeEEcccc----ccCCccceEEEcCCC--ccEeCc-cccceeehhcccccccc-ceeccc----cc
Confidence 34567777777542 222221 124566777777542 111111 12236677777777532 111111 12
Q ss_pred CCCCCcccEEEecccc-CcCCHHHHHHHHHhCCCCceEEeCCCCChHHHH-HHHhhCCCceEEcC
Q 007912 181 PDTCTSLVSLNIACLG-SEVSFSALERLVVRCPNLRTLRLNRAVPLEKLA-HLLRQAPQLVELGT 243 (585)
Q Consensus 181 ~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l 243 (585)
...|++|+.+.+.... ..+.... ..+|.+|+.+.+... +..+. ..+..+++|+.+.+
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~a----F~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRV----FMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTT----TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCC
T ss_pred cccccccccccccccccceehhhh----hcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEE
Confidence 2346677777776431 1233322 345777777777532 22121 22455667777665
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=56.28 E-value=12 Score=29.26 Aligned_cols=14 Identities=21% Similarity=0.238 Sum_probs=7.0
Q ss_pred CCcEEEcccCCCCC
Q 007912 158 NLKELDLWESDVED 171 (585)
Q Consensus 158 ~L~~L~l~~~~~~~ 171 (585)
+|++|+|++|.+..
T Consensus 32 ~l~~L~Ls~N~l~~ 45 (130)
T 3rfe_A 32 DTTELVLTGNNLTA 45 (130)
T ss_dssp TCSEEECTTSCCSS
T ss_pred CCCEEECCCCcCCc
Confidence 45555555554443
Done!