Query 007913
Match_columns 585
No_of_seqs 311 out of 3254
Neff 9.6
Searched_HMMs 46136
Date Thu Mar 28 17:01:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00906 2A0303 cationic amin 100.0 7E-67 1.5E-71 559.0 55.3 497 72-570 23-557 (557)
2 PRK15049 L-asparagine permease 100.0 2.8E-56 6E-61 473.4 48.8 365 72-453 23-408 (499)
3 PRK11387 S-methylmethionine tr 100.0 3.6E-55 7.7E-60 464.3 46.0 421 73-566 10-458 (471)
4 PRK10249 phenylalanine transpo 100.0 5E-54 1.1E-58 453.1 46.4 363 71-452 15-396 (458)
5 PRK10746 putative transport pr 100.0 1E-53 2.2E-58 450.2 47.1 421 71-567 4-452 (461)
6 PRK11357 frlA putative fructos 100.0 5.8E-54 1.3E-58 452.7 44.1 422 72-568 3-439 (445)
7 TIGR00909 2A0306 amino acid tr 100.0 3.9E-53 8.4E-58 445.5 47.4 426 75-563 1-429 (429)
8 PRK10655 potE putrescine trans 100.0 1.9E-53 4.2E-58 448.2 45.0 420 75-571 4-435 (438)
9 PRK10644 arginine:agmatin anti 100.0 3.9E-53 8.4E-58 446.2 46.8 419 72-569 3-434 (445)
10 TIGR00908 2A0305 ethanolamine 100.0 5.4E-53 1.2E-57 445.3 47.4 420 72-570 2-436 (442)
11 PRK10238 aromatic amino acid t 100.0 1.2E-52 2.6E-57 442.3 46.8 365 71-454 6-389 (456)
12 PRK10580 proY putative proline 100.0 1.1E-52 2.4E-57 443.9 46.5 420 71-565 3-448 (457)
13 PRK10836 lysine transporter; P 100.0 1.2E-52 2.6E-57 446.6 46.9 400 71-543 9-437 (489)
14 TIGR01773 GABAperm gamma-amino 100.0 1.5E-52 3.3E-57 442.8 45.9 367 72-457 7-394 (452)
15 COG1113 AnsP Gamma-aminobutyra 100.0 9.3E-53 2E-57 414.0 36.7 421 71-567 7-453 (462)
16 PRK11049 D-alanine/D-serine/gl 100.0 6.7E-52 1.5E-56 438.6 46.1 366 72-456 15-404 (469)
17 COG0833 LysP Amino acid transp 100.0 9.9E-53 2.1E-57 422.4 37.1 399 74-544 41-467 (541)
18 KOG1286 Amino acid transporter 100.0 1.7E-53 3.6E-58 445.1 29.9 487 73-569 26-553 (554)
19 PRK10435 cadB lysine/cadaverin 100.0 1.7E-51 3.7E-56 431.7 44.8 410 74-568 2-428 (435)
20 KOG1287 Amino acid transporter 100.0 1.4E-52 3.1E-57 420.3 34.3 426 71-513 6-443 (479)
21 KOG1289 Amino acid transporter 100.0 1.2E-52 2.6E-57 420.5 32.4 458 57-572 30-518 (550)
22 TIGR00911 2A0308 L-type amino 100.0 4.4E-51 9.5E-56 436.7 44.2 377 71-461 36-425 (501)
23 TIGR03428 ureacarb_perm permea 100.0 1.1E-50 2.4E-55 430.4 46.4 416 71-513 7-446 (475)
24 TIGR00905 2A0302 transporter, 100.0 7.4E-51 1.6E-55 431.5 44.8 418 75-567 5-439 (473)
25 TIGR00913 2A0310 amino acid pe 100.0 1.5E-50 3.2E-55 431.1 46.5 360 76-454 1-395 (478)
26 PRK10197 gamma-aminobutyrate t 100.0 1E-50 2.2E-55 426.5 44.4 347 87-452 2-369 (446)
27 PRK11021 putative transporter; 100.0 7.9E-50 1.7E-54 416.8 46.1 354 79-451 1-362 (410)
28 TIGR00907 2A0304 amino acid pe 100.0 1.6E-49 3.5E-54 423.3 43.8 443 71-569 6-480 (482)
29 TIGR00930 2a30 K-Cl cotranspor 100.0 5.1E-49 1.1E-53 438.1 47.2 426 73-568 72-541 (953)
30 TIGR03810 arg_ornith_anti argi 100.0 1.2E-48 2.6E-53 414.0 44.9 413 77-565 1-432 (468)
31 TIGR03813 put_Glu_GABA_T putat 100.0 1.6E-45 3.5E-50 391.1 45.2 435 77-567 1-458 (474)
32 TIGR00910 2A0307_GadC glutamat 100.0 2E-44 4.3E-49 383.0 45.2 400 76-512 3-428 (507)
33 PF13520 AA_permease_2: Amino 100.0 4.5E-44 9.8E-49 376.8 35.4 361 79-457 1-381 (426)
34 COG0531 PotE Amino acid transp 100.0 1.5E-42 3.2E-47 370.2 45.3 379 71-460 6-398 (466)
35 PRK15238 inner membrane transp 100.0 1.3E-41 2.9E-46 362.5 45.1 377 74-460 4-430 (496)
36 PF00324 AA_permease: Amino ac 100.0 2.7E-45 5.9E-50 390.3 11.3 361 84-457 2-398 (478)
37 KOG2082 K+/Cl- cotransporter K 100.0 4.9E-31 1.1E-35 268.0 26.0 426 76-518 111-653 (1075)
38 TIGR00837 araaP aromatic amino 100.0 5.1E-29 1.1E-33 257.8 31.3 339 86-448 4-353 (381)
39 KOG1288 Amino acid transporter 100.0 3.3E-27 7.1E-32 238.7 22.7 395 78-480 66-502 (945)
40 TIGR00912 2A0309 spore germina 99.9 1.5E-22 3.2E-27 207.9 36.6 285 78-381 2-293 (359)
41 KOG2083 Na+/K+ symporter [Inor 99.9 2.7E-23 5.9E-28 209.3 17.2 392 76-482 27-448 (643)
42 TIGR00796 livcs branched-chain 99.9 1.2E-18 2.7E-23 175.4 36.9 335 89-460 5-363 (378)
43 PHA02764 hypothetical protein; 99.8 3.8E-19 8.3E-24 165.8 24.1 279 70-404 5-285 (399)
44 PF03222 Trp_Tyr_perm: Tryptop 99.8 4.3E-17 9.3E-22 167.2 39.1 353 77-453 1-367 (394)
45 TIGR00814 stp serine transport 99.8 3.9E-17 8.4E-22 167.1 30.4 289 82-386 6-313 (397)
46 PRK09664 tryptophan permease T 99.8 1.1E-15 2.4E-20 154.8 35.7 343 80-446 10-366 (415)
47 PRK10483 tryptophan permease; 99.8 1.2E-15 2.7E-20 154.7 35.7 344 75-443 7-362 (414)
48 PRK15132 tyrosine transporter 99.8 1.2E-14 2.6E-19 148.4 37.0 347 80-451 4-362 (403)
49 COG0814 SdaC Amino acid permea 99.7 5.5E-14 1.2E-18 145.3 36.2 287 73-372 3-303 (415)
50 PF03845 Spore_permease: Spore 99.7 2.2E-14 4.7E-19 144.7 31.6 285 78-382 1-290 (320)
51 PRK13629 threonine/serine tran 99.7 6E-13 1.3E-17 135.1 34.7 289 85-386 25-348 (443)
52 PF01235 Na_Ala_symp: Sodium:a 99.4 5.1E-10 1.1E-14 113.3 29.0 292 73-384 13-338 (416)
53 KOG1303 Amino acid transporter 99.3 6.8E-10 1.5E-14 114.1 27.3 352 75-448 34-398 (437)
54 PLN03074 auxin influx permease 99.3 3.9E-09 8.5E-14 111.1 32.9 238 77-333 44-294 (473)
55 PTZ00206 amino acid transporte 99.3 1.4E-08 3.1E-13 107.3 34.4 245 80-333 61-319 (467)
56 TIGR00835 agcS amino acid carr 99.3 1E-08 2.2E-13 104.7 31.5 286 77-383 45-364 (425)
57 COG1115 AlsT Na+/alanine sympo 99.3 3.4E-08 7.3E-13 99.0 32.7 291 74-384 58-382 (452)
58 KOG1304 Amino acid transporter 99.2 5.8E-09 1.3E-13 105.5 26.9 345 77-451 45-414 (449)
59 PRK11375 allantoin permease; P 99.2 2.7E-07 5.9E-12 97.7 37.4 330 73-420 21-364 (484)
60 PF13906 AA_permease_C: C-term 99.1 1.8E-10 3.8E-15 79.4 5.6 51 518-568 1-51 (51)
61 COG3949 Uncharacterized membra 99.0 2E-06 4.4E-11 82.6 31.9 264 86-375 10-280 (349)
62 PRK11017 codB cytosine permeas 98.9 2.7E-05 5.9E-10 80.9 36.5 218 76-317 8-229 (404)
63 COG1457 CodB Purine-cytosine p 98.9 2.3E-05 4.9E-10 80.2 34.5 169 113-301 54-224 (442)
64 PF01490 Aa_trans: Transmembra 98.7 9.3E-10 2E-14 115.4 -1.6 355 77-453 1-376 (409)
65 COG1953 FUI1 Cytosine/uracil/t 98.7 0.00023 5.1E-09 73.0 34.0 328 72-418 34-376 (497)
66 PRK09442 panF sodium/panthothe 98.6 0.0014 3.1E-08 70.0 40.7 283 76-379 40-346 (483)
67 TIGR00800 ncs1 NCS1 nucleoside 98.6 0.00049 1.1E-08 72.7 34.6 244 73-324 8-260 (442)
68 TIGR00813 sss transporter, SSS 98.5 0.00062 1.3E-08 71.2 32.3 285 76-380 2-322 (407)
69 COG0733 Na+-dependent transpor 98.4 0.0023 4.9E-08 65.1 31.9 288 81-373 11-324 (439)
70 TIGR02358 thia_cytX probable h 98.4 0.0051 1.1E-07 63.6 37.8 198 113-328 31-229 (386)
71 PF05525 Branch_AA_trans: Bran 98.4 0.0033 7.2E-08 64.7 33.5 313 91-439 15-346 (427)
72 TIGR02119 panF sodium/pantothe 98.4 0.0067 1.5E-07 64.8 41.0 284 76-379 39-345 (471)
73 TIGR02121 Na_Pro_sym sodium/pr 98.4 0.0071 1.5E-07 64.8 40.2 283 76-379 35-345 (487)
74 PRK00701 manganese transport p 98.3 0.0049 1.1E-07 64.5 34.5 68 121-188 71-140 (439)
75 PF01566 Nramp: Natural resist 98.2 0.0034 7.3E-08 64.4 30.1 244 122-384 20-285 (358)
76 PRK15433 branched-chain amino 98.2 0.0089 1.9E-07 61.6 31.3 310 91-438 20-348 (439)
77 PRK10484 putative transporter; 98.1 0.02 4.4E-07 61.9 44.7 291 76-379 37-354 (523)
78 PF00474 SSF: Sodium:solute sy 98.1 0.00026 5.7E-09 74.0 20.8 289 76-387 5-324 (406)
79 COG1914 MntH Mn2+ and Fe2+ tra 98.1 0.018 4E-07 59.2 34.1 74 115-188 48-123 (416)
80 PRK12488 acetate permease; Pro 98.1 0.029 6.3E-07 60.9 37.1 154 76-249 66-221 (549)
81 KOG1305 Amino acid transporter 98.1 0.0021 4.5E-08 66.3 24.9 250 76-334 3-258 (411)
82 PRK15419 proline:sodium sympor 98.1 0.03 6.5E-07 60.2 41.0 282 76-379 39-352 (502)
83 PF02133 Transp_cyt_pur: Perme 98.0 0.00045 9.7E-09 73.1 19.2 171 75-250 5-178 (440)
84 PRK09395 actP acetate permease 97.9 0.054 1.2E-06 58.9 36.0 151 76-246 68-220 (551)
85 TIGR02711 symport_actP cation/ 97.9 0.058 1.3E-06 58.6 36.9 152 76-248 66-220 (549)
86 TIGR03648 Na_symport_lg probab 97.9 0.064 1.4E-06 58.4 36.7 148 76-245 31-182 (552)
87 COG0591 PutP Na+/proline sympo 97.8 0.077 1.7E-06 56.8 39.3 282 76-380 37-353 (493)
88 PF02028 BCCT: BCCT family tra 97.7 0.099 2.2E-06 55.2 33.1 344 75-451 71-484 (485)
89 PLN00151 potassium transporter 97.5 0.043 9.3E-07 60.1 23.9 221 209-442 274-511 (852)
90 PF02705 K_trans: K+ potassium 97.3 0.18 4E-06 53.3 25.6 229 209-451 132-378 (534)
91 COG1114 BrnQ Branched-chain am 97.3 0.27 5.8E-06 49.8 32.3 314 86-438 12-347 (431)
92 COG4147 DhlC Predicted symport 96.7 1 2.2E-05 46.5 30.4 270 127-420 90-410 (529)
93 KOG4303 Vesicular inhibitory a 96.5 0.015 3.3E-07 56.4 9.0 230 76-325 114-355 (524)
94 TIGR00842 bcct choline/carniti 96.3 1.7 3.8E-05 45.5 27.4 23 76-98 34-56 (453)
95 PLN00150 potassium ion transpo 96.3 2 4.4E-05 47.4 24.6 220 209-441 214-450 (779)
96 TIGR00794 kup potassium uptake 96.3 0.42 9.2E-06 52.1 19.5 222 209-443 168-406 (688)
97 PLN00149 potassium transporter 96.1 1.6 3.4E-05 48.3 22.5 223 210-441 199-437 (779)
98 PRK10745 trkD potassium transp 95.9 2.7 5.9E-05 45.3 23.1 222 209-443 143-380 (622)
99 PRK09950 putative transporter; 95.9 2.9 6.2E-05 44.5 28.0 23 76-98 81-103 (506)
100 PLN00148 potassium transporter 95.6 1.8 3.9E-05 47.9 20.5 220 209-441 197-433 (785)
101 COG1292 BetT Choline-glycine b 95.5 4.1 8.9E-05 43.0 27.1 90 355-452 405-498 (537)
102 KOG2466 Uridine permease/thiam 95.3 2.2 4.7E-05 44.1 18.7 302 73-395 50-381 (572)
103 PF00209 SNF: Sodium:neurotran 95.3 5.4 0.00012 43.2 27.8 97 224-323 195-301 (523)
104 PRK09928 choline transport pro 94.3 10 0.00022 41.7 28.0 91 355-449 409-502 (679)
105 PF05297 Herpes_LMP1: Herpesvi 92.0 0.044 9.5E-07 51.5 0.0 19 395-413 13-31 (381)
106 KOG1287 Amino acid transporter 91.6 3.1 6.8E-05 43.5 12.7 68 494-564 368-440 (479)
107 PRK03356 L-carnitine/gamma-but 91.5 22 0.00048 38.0 28.6 23 76-98 83-105 (504)
108 COG3158 Kup K+ transporter [In 90.3 28 0.00061 37.1 20.7 228 209-451 148-394 (627)
109 COG4145 PanF Na+/panthothenate 90.2 22 0.00048 35.8 28.8 245 115-378 72-343 (473)
110 TIGR01197 nramp NRAMP (natural 88.5 33 0.00072 35.5 33.7 42 341-382 282-323 (390)
111 KOG2349 Na+:iodide/myo-inosito 87.7 16 0.00034 39.5 14.5 222 142-382 108-362 (585)
112 TIGR00910 2A0307_GadC glutamat 80.9 68 0.0015 34.6 16.4 57 511-567 389-464 (507)
113 PTZ00206 amino acid transporte 79.8 83 0.0018 33.5 16.4 56 339-394 121-176 (467)
114 COG1966 CstA Carbon starvation 75.1 1.2E+02 0.0027 32.4 30.0 97 80-177 53-149 (575)
115 PHA03049 IMV membrane protein; 73.9 6.1 0.00013 28.5 3.8 26 547-572 7-32 (68)
116 COG4146 Predicted symporter [G 69.9 1.3E+02 0.0028 30.5 28.2 46 143-188 104-150 (571)
117 PF05961 Chordopox_A13L: Chord 69.0 9.3 0.0002 27.8 3.8 27 547-573 7-33 (68)
118 COG3247 HdeD Uncharacterized c 67.5 99 0.0021 28.1 15.9 41 399-439 14-54 (185)
119 KOG3660 Sodium-neurotransmitte 66.6 2.1E+02 0.0046 31.6 26.1 60 80-139 39-102 (629)
120 PF01102 Glycophorin_A: Glycop 65.6 10 0.00022 31.8 4.1 19 550-568 76-94 (122)
121 PF05767 Pox_A14: Poxvirus vir 63.8 28 0.0006 27.1 5.7 20 548-567 53-72 (92)
122 PF02554 CstA: Carbon starvati 61.2 2E+02 0.0042 29.4 21.5 101 79-181 52-153 (376)
123 TIGR00837 araaP aromatic amino 56.1 2.4E+02 0.0052 28.9 26.6 56 399-455 308-363 (381)
124 PLN00411 nodulin MtN21 family 54.9 2.3E+02 0.0051 28.9 12.8 22 520-541 286-307 (358)
125 TIGR00930 2a30 K-Cl cotranspor 53.8 4.3E+02 0.0094 31.1 34.5 22 461-482 498-519 (953)
126 PRK11056 hypothetical protein; 53.4 1.3E+02 0.0028 24.9 8.8 17 551-567 97-113 (120)
127 PHA03048 IMV membrane protein; 50.1 75 0.0016 24.7 6.0 21 548-568 52-72 (93)
128 PRK15433 branched-chain amino 47.5 3.6E+02 0.0079 28.4 14.5 76 146-239 269-344 (439)
129 KOG3659 Sodium-neurotransmitte 46.2 4.3E+02 0.0093 28.8 29.5 114 211-325 256-377 (629)
130 PF06570 DUF1129: Protein of u 45.8 2.5E+02 0.0054 26.0 12.9 9 407-415 87-95 (206)
131 PHA02898 virion envelope prote 41.3 1.1E+02 0.0024 23.7 5.8 22 548-569 53-74 (92)
132 PF14256 YwiC: YwiC-like prote 40.1 2.3E+02 0.0051 24.0 13.0 46 407-452 7-52 (129)
133 KOG1304 Amino acid transporter 37.7 5.1E+02 0.011 27.3 13.8 87 347-443 132-219 (449)
134 PF09991 DUF2232: Predicted me 35.8 4.2E+02 0.009 25.7 20.2 96 353-452 157-257 (290)
135 COG2271 UhpC Sugar phosphate p 35.1 5.5E+02 0.012 26.9 11.5 49 364-421 67-115 (448)
136 PF06027 DUF914: Eukaryotic pr 35.0 3.8E+02 0.0083 27.1 10.4 15 550-564 293-307 (334)
137 KOG1619 Cytochrome b [Energy p 34.9 65 0.0014 30.3 4.5 31 507-537 146-176 (245)
138 PF04238 DUF420: Protein of un 34.3 3E+02 0.0065 23.6 9.2 18 437-454 15-32 (133)
139 PRK10532 threonine and homoser 33.5 4.7E+02 0.01 25.6 11.3 41 523-563 242-282 (293)
140 PF09925 DUF2157: Predicted me 33.5 3.2E+02 0.0068 23.6 9.0 36 527-562 98-136 (145)
141 COG1272 Predicted membrane pro 31.8 4.5E+02 0.0097 24.9 13.4 67 490-560 116-183 (226)
142 PF05525 Branch_AA_trans: Bran 31.6 6.3E+02 0.014 26.5 15.5 93 146-255 265-357 (427)
143 PRK11383 hypothetical protein; 29.6 3.7E+02 0.008 23.2 11.1 85 399-483 4-96 (145)
144 PRK00968 tetrahydromethanopter 29.2 72 0.0016 29.3 3.7 32 294-325 204-236 (240)
145 COG0109 CyoE Polyprenyltransfe 27.7 6.1E+02 0.013 25.1 12.1 40 402-441 97-138 (304)
146 TIGR00913 2A0310 amino acid pe 27.1 5.9E+02 0.013 27.0 11.2 12 554-565 451-462 (478)
147 COG4060 MtrD Tetrahydromethano 26.9 82 0.0018 27.8 3.5 31 295-325 195-226 (230)
148 PLN02351 cytochromes b561 fami 26.9 5.6E+02 0.012 24.4 12.2 22 512-533 145-166 (242)
149 TIGR00906 2A0303 cationic amin 26.3 8.8E+02 0.019 26.5 33.1 53 450-510 494-550 (557)
150 PF08693 SKG6: Transmembrane a 25.1 43 0.00092 21.9 1.1 17 550-566 23-39 (40)
151 PRK05886 yajC preprotein trans 24.8 72 0.0016 26.2 2.7 20 552-571 10-29 (109)
152 TIGR00739 yajC preprotein tran 24.7 58 0.0013 25.3 2.1 19 553-571 10-28 (84)
153 COG1114 BrnQ Branched-chain am 24.1 8.3E+02 0.018 25.5 15.4 74 145-235 266-339 (431)
154 PF03825 Nuc_H_symport: Nucleo 23.6 8.3E+02 0.018 25.3 12.4 20 397-416 61-80 (400)
155 PF07226 DUF1422: Protein of u 23.2 4.4E+02 0.0094 21.9 9.6 18 550-567 96-113 (117)
156 COG4025 Predicted membrane pro 22.5 6.7E+02 0.014 23.7 9.5 15 376-390 56-70 (284)
157 PRK03557 zinc transporter ZitB 22.2 7.8E+02 0.017 24.4 16.6 17 447-463 69-85 (312)
158 TIGR00796 livcs branched-chain 22.0 8.8E+02 0.019 25.0 15.6 74 146-236 259-332 (378)
159 PF05545 FixQ: Cbb3-type cytoc 22.0 1.2E+02 0.0025 20.7 3.0 12 551-562 19-30 (49)
160 PF02699 YajC: Preprotein tran 21.6 85 0.0018 24.3 2.5 18 552-569 8-25 (82)
161 PRK05585 yajC preprotein trans 21.5 84 0.0018 25.7 2.5 20 550-569 22-41 (106)
162 PF12263 DUF3611: Protein of u 21.1 6.3E+02 0.014 23.0 8.8 47 272-318 65-114 (183)
163 cd08766 Cyt_b561_ACYB-1_like P 21.1 5.5E+02 0.012 22.3 10.1 69 460-530 41-121 (144)
164 TIGR01404 FlhB_rel_III type II 20.8 8.9E+02 0.019 24.5 12.7 20 548-567 189-208 (342)
165 PF02705 K_trans: K+ potassium 20.5 5.7E+02 0.012 27.7 9.1 19 542-560 412-430 (534)
166 PF02009 Rifin_STEVOR: Rifin/s 20.5 95 0.0021 30.7 3.1 19 549-567 265-283 (299)
167 PF11998 DUF3493: Protein of u 20.3 4E+02 0.0086 20.3 6.8 40 288-327 4-43 (75)
No 1
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=7e-67 Score=559.03 Aligned_cols=497 Identities=36% Similarity=0.602 Sum_probs=409.2
Q ss_pred CCccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHH
Q 007913 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (585)
Q Consensus 72 ~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~ 151 (585)
+++++|+++.+|+++++++.++|+|+|..++.++...+||+.+++|+++++.+++.+++|+|+++++|++||.|.|+++.
T Consensus 23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~ 102 (557)
T TIGR00906 23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVT 102 (557)
T ss_pred ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHH
Confidence 45689999999999999999999999999998875558999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCC--CCcchHHHHHHHHHHHHHHhhhhh
Q 007913 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADG--FNLLDPVAVLILLVCNGIAMSGTR 229 (585)
Q Consensus 152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~g~~ 229 (585)
+|+.+||++||.+++++....+..+.+.+.|+..+++ .....+.........+ ......++++++++++.+|.+|+|
T Consensus 103 ~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~-~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik 181 (557)
T TIGR00906 103 VGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLN-KQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVK 181 (557)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccccccccccccCCcccccchHHHHHHHHHHHHHHHhchh
Confidence 9999999999999999999999999999999988775 2111111000000000 012346778888888999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhheecccCCCCC--------CCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCC
Q 007913 230 RSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLD--------PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPS 301 (585)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~ 301 (585)
..+++|++++.+|++.++++++.++.+.+.+|+. ++.|.++.+++.++..++|+|.|+|.+++++||+|||+
T Consensus 182 ~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~ 261 (557)
T TIGR00906 182 ESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQ 261 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCcc
Confidence 9999999999999999988888888776666654 67777888999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 007913 302 RDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTT 381 (585)
Q Consensus 302 r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 381 (585)
||+||+++.++.+++++|++.++++....|+++.+.++|+..+++..+.++...++.++++.+.+++.++.+++.+|++|
T Consensus 262 r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~ 341 (557)
T TIGR00906 262 RAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIY 341 (557)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888999999988888999999999999999999999999999999
Q ss_pred HHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-CC-
Q 007913 382 QIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTP-KN- 459 (585)
Q Consensus 382 ~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~-~~- 459 (585)
+|||||.+|++|+|+|||+++|++|+++.++++.++.++.+++.+.++.+++.++.|.+.+++.+++|++++...+ +.
T Consensus 342 amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~~~~~~~~~~ 421 (557)
T TIGR00906 342 AMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQAKD 421 (557)
T ss_pred HHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence 9999999999999999999999999999999999888888899999999999999999999999999987522100 00
Q ss_pred ---------------------c--hhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHH---HHHHHHHhcccccC
Q 007913 460 ---------------------N--LVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPW---FLGTLGMALLPKQR 513 (585)
Q Consensus 460 ---------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 513 (585)
+ ..+.+ ....++..+..+...+......+|...+..++. +.....+...|+.+
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (557)
T TIGR00906 422 TDEKDTLDSWVPFTSKSESQSEGFSLRTL-FSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQPQNK 500 (557)
T ss_pred ccccccccccccccccccccccchhHHHH-HHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 0 01111 111222222222222221111233222222222 22223334444544
Q ss_pred CCCCCcccccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 007913 514 VPKLWGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFIICSAVMLVYYLLVGLHATYD 570 (585)
Q Consensus 514 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~ 570 (585)
.+++||+|.+|++|+++++.|++++.+++..+|..+.+|+++|++.|+.|++||+++
T Consensus 501 ~~~~f~~p~~p~~p~~~i~~~~~l~~~l~~~~~~~~~~w~~~g~~~y~~yg~~~s~~ 557 (557)
T TIGR00906 501 QKVAFKVPLVPFLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHSLE 557 (557)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhhhccCC
Confidence 589999999999999999999999999999999999999999999999999999874
No 2
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=2.8e-56 Score=473.35 Aligned_cols=365 Identities=19% Similarity=0.300 Sum_probs=312.2
Q ss_pred CCccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHH
Q 007913 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (585)
Q Consensus 72 ~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~ 151 (585)
++++||+++.+++.++++|.+||+|+|..++..... +||..+++|+++++++++++.+++||++++|++||.|+|+++.
T Consensus 23 ~~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~-aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~ 101 (499)
T PRK15049 23 EEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQM-AGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREF 101 (499)
T ss_pred chhhhccCCHhHhHHHhhhccccchHHHhhHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 345899999999999999999999999999999877 9998889999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhh
Q 007913 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRS 231 (585)
Q Consensus 152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 231 (585)
+||..||++||.++++|....+......+.+...+-. .+ + ...+.++.+++++++.+|++|+|..
T Consensus 102 ~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~~~-~~---------~-----~~~~~~~~~~~~l~~~iN~~gvk~~ 166 (499)
T PRK15049 102 LGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGA-FG---------G-----VPQWVFALAALTIVGTMNMIGVKWF 166 (499)
T ss_pred hCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CC---------C-----CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987666655555555543211 10 0 0123567778889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhheec---ccC--C---CC------CCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhh
Q 007913 232 SWLNWISSIVSSCVIVFVIIVGFVH---GKT--T---NL------DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEET 297 (585)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~~~~---~~~--~---~~------~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~ 297 (585)
+++|.+++.+|++.++++++.++.. .+. . ++ .++.|+|+.+++.++..++|+|.|+|.+++++||+
T Consensus 167 ~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~ 246 (499)
T PRK15049 167 AEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGEC 246 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 9999999999988877766554421 110 0 11 23456667777778888999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccc-cccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007913 298 KKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQ 376 (585)
Q Consensus 298 k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (585)
|||+|++|||+..++..+.++|++..+++....|++++. .++|+.++++..+.++...++.+..+++.+++.++.+++.
T Consensus 247 knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~ 326 (499)
T PRK15049 247 KDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCT 326 (499)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988875 3579999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007913 377 ARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF------SSLNILSSVFSFSTLSIFMLMAIALLVRRY 450 (585)
Q Consensus 377 sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~ 450 (585)
||++|+|||||.+|++|+|+| |+++|++|++++++++.+..++ ..++.+.++.+.+.++.|.+.+++.+++|+
T Consensus 327 sR~l~a~Ardg~lP~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R~ 405 (499)
T PRK15049 327 GRILRSMAMGGSAPSFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRK 405 (499)
T ss_pred HHHHHHHHhcCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 8899999999988876543222 348999999999999999999999999987
Q ss_pred ccC
Q 007913 451 YEK 453 (585)
Q Consensus 451 ~~~ 453 (585)
+.+
T Consensus 406 ~~~ 408 (499)
T PRK15049 406 AIK 408 (499)
T ss_pred hhh
Confidence 644
No 3
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=3.6e-55 Score=464.26 Aligned_cols=421 Identities=18% Similarity=0.287 Sum_probs=346.2
Q ss_pred CccccccChhHHHHHhhcccccccchhccHHhHhhccCh-hHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHH
Q 007913 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGP-AIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (585)
Q Consensus 73 ~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~ 151 (585)
+++||+++.+++++++++.++|+|+|..++..++. +|| +.+++|+++++++++++++++||++++|++||.|.|+++.
T Consensus 10 ~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~-~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~ 88 (471)
T PRK11387 10 GQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIIST-TGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARY 88 (471)
T ss_pred hhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 45899999999999999999999999999999877 887 5899999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhh
Q 007913 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRS 231 (585)
Q Consensus 152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 231 (585)
+||.+||.+||.+|+++....+......+.++..+.+ . . ......+++.++++.+|++|+|..
T Consensus 89 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p-~-~---------------~~~~~~~~~~~~~~~in~~gvk~~ 151 (471)
T PRK11387 89 LGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFP-Q-V---------------PVWPWCLLFCALIFGLNVVSTRFF 151 (471)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-c-C---------------cHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999998887776666655544333 0 0 012445556677889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhheec------ccC-------CCC--CCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhh
Q 007913 232 SWLNWISSIVSSCVIVFVIIVGFVH------GKT-------TNL--DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEE 296 (585)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~~~~------~~~-------~~~--~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E 296 (585)
++++.+++.+|++.++++++.++.. .+. +++ .++.|++..+++.++..++|+|.|+|.+++++||
T Consensus 152 ~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E 231 (471)
T PRK11387 152 AEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGE 231 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 9999999999998877666654321 000 111 2344556667888888999999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccc-cccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007913 297 TKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLG 375 (585)
Q Consensus 297 ~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (585)
+|||+||+|||++.++.++.++|++..+++....|.++.. +++|+.++++..+++++..++.+..+++.+++.++.+++
T Consensus 232 ~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~ 311 (471)
T PRK11387 232 TENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYA 311 (471)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988888887765 457999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007913 376 QARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF------SSLNILSSVFSFSTLSIFMLMAIALLVRR 449 (585)
Q Consensus 376 ~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r 449 (585)
.||++|+|||||.+|++|+|+| |+++|++|++++.+++++..+. ..++.+.++.+...++.|++.+++.+++|
T Consensus 312 ~sR~l~a~ardg~lP~~f~~~~-~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~~~~i~lr 390 (471)
T PRK11387 312 SGRMLWSLSNEGTLPACFARLT-KRGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHFMFR 390 (471)
T ss_pred hhHHHHHHHhcCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 6799999999887655433332 23567888889999999999999999999
Q ss_pred hccCCCCCCCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccchHHHH
Q 007913 450 YYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSL 529 (585)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 529 (585)
+++++.. ++..+++||.|..|+++.+
T Consensus 391 ~~~~~~~------------------------------------------------------~~~~~~~~~~~~~~~~~~l 416 (471)
T PRK11387 391 RRHLRDG------------------------------------------------------KALSELAYRAPWYPLTPIL 416 (471)
T ss_pred HHHHhcC------------------------------------------------------CCCCCCCccCCCccHHHHH
Confidence 8866432 2234567889999999999
Q ss_pred HHHHHHHHHhcCCHHH-----HHHHHHHHHHHHHHHHHhhcc
Q 007913 530 SIAMNLFLIGSLGYLA-----FLRFIICSAVMLVYYLLVGLH 566 (585)
Q Consensus 530 ~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~y~~~~~~ 566 (585)
+++.+++++....... ....+.+++++++.|.+++|+
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (471)
T PRK11387 417 GFVLCLLACVGLAFDPSQRIALWCGIPFVALCYGAYYLTQRL 458 (471)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9988887776432221 234566677788888766543
No 4
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=5e-54 Score=453.07 Aligned_cols=363 Identities=19% Similarity=0.314 Sum_probs=316.1
Q ss_pred cCCccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHH
Q 007913 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (585)
Q Consensus 71 ~~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 150 (585)
+++++||+++.+|+.++++++++|+|+|..++..... +||..+++|+++++++++++++++|+++++|++||.|.|+++
T Consensus 15 ~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~-aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~ 93 (458)
T PRK10249 15 QEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQM-AGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYK 93 (458)
T ss_pred CchhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 4567999999999999999999999999999999877 899999999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhh
Q 007913 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (585)
Q Consensus 151 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (585)
.+||.+||++||.+|+.+....+......+.++..+++.. ....++.+++++.+.+|++|+|.
T Consensus 94 ~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~-----------------~~~~~~~~~~~l~~~lN~~gv~~ 156 (458)
T PRK10249 94 YWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDV-----------------PTWIWAAAFFIIINAVNLVNVRL 156 (458)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC-----------------cHHHHHHHHHHHHHHHHHhcchh
Confidence 9999999999999999998877777777777777654410 01256777888899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhheec---cc------CCC-C--CCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhc
Q 007913 231 SSWLNWISSIVSSCVIVFVIIVGFVH---GK------TTN-L--DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETK 298 (585)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~~~---~~------~~~-~--~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k 298 (585)
.+++|.+++.+|++.++++++.++.. .+ .++ + .++.|+++.+++.++...+|+|.|+|.+++++||+|
T Consensus 157 ~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~ 236 (458)
T PRK10249 157 YGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEAR 236 (458)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhc
Confidence 99999999999987776665544321 11 111 1 123456788899999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007913 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQA 377 (585)
Q Consensus 299 ~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 377 (585)
||+|++|||+..++..+.++|++..+......|+++... ++|+.+++++.++++...++.+..+++.+++.++.+++.|
T Consensus 237 ~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~s 316 (458)
T PRK10249 237 DPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNS 316 (458)
T ss_pred CHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888888888877653 4799999998888998999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007913 378 RYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF------SSLNILSSVFSFSTLSIFMLMAIALLVRRYY 451 (585)
Q Consensus 378 R~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~ 451 (585)
|++|+|||||.+|++|+|+| |+++|++|++++.+++.+..+. ..|+.+.++.+...++.|.+.+++.+++|++
T Consensus 317 R~l~a~ardg~lP~~~~kv~-~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~ 395 (458)
T PRK10249 317 RMLFGLSVQGNAPKFLTRVS-RRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAA 395 (458)
T ss_pred HHHHHHhcCCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 7799999999999988766544 2578899999999999999999999998875
Q ss_pred c
Q 007913 452 E 452 (585)
Q Consensus 452 ~ 452 (585)
+
T Consensus 396 ~ 396 (458)
T PRK10249 396 M 396 (458)
T ss_pred H
Confidence 3
No 5
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=1e-53 Score=450.19 Aligned_cols=421 Identities=18% Similarity=0.292 Sum_probs=351.8
Q ss_pred cCCccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHH
Q 007913 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (585)
Q Consensus 71 ~~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 150 (585)
.++++||+++.+|+.+++++++||+|+|..++..... +||..+++|++++++.++++++++||++++|++||.|+|++|
T Consensus 4 ~~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~-aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~ 82 (461)
T PRK10746 4 NKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKW-AGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHR 82 (461)
T ss_pred CchHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 3557899999999999999999999999999999887 999989999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhh
Q 007913 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (585)
Q Consensus 151 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (585)
.+||.+||.+||.+|+.+....+....+.+.++..+++.. .......+++++.+.+|++|+|.
T Consensus 83 ~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~-----------------~~~~~~~~~~~~~~~lN~~gv~~ 145 (461)
T PRK10746 83 YMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEM-----------------AQWIPALIAVALVALANLAAVRL 145 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-----------------chHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999888888888888887765411 01255666778888999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhheec-----c---c---CCCCC---CCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhh
Q 007913 231 SSWLNWISSIVSSCVIVFVIIVGFVH-----G---K---TTNLD---PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEE 296 (585)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~~~-----~---~---~~~~~---~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E 296 (585)
.+++|.+++.+|+..++++++.++.. . + .+|+. ++.++|+.++..++..++|+|.|+|.+++.+||
T Consensus 146 ~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E 225 (461)
T PRK10746 146 YGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGE 225 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999999988776666544311 1 1 12222 245667888999999999999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007913 297 TKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLG 375 (585)
Q Consensus 297 ~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (585)
+|||+|++|||+..++..+.++|++..+++....|+++.+. ++|+.++++..+.+....++++..+.+.+++.++.+++
T Consensus 226 ~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~ 305 (461)
T PRK10746 226 AKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYS 305 (461)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888999988764 46999999998988888899999999999999999999
Q ss_pred hhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHH---HHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007913 376 QARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAI---IALF-----SSLNILSSVFSFSTLSIFMLMAIALLV 447 (585)
Q Consensus 376 ~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~---~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~l~ 447 (585)
.||++|+|||||.+|++|+|+| |+|+|++|++++.+...+ +.+. ..++.+.++.+.+.++.|.+++++.++
T Consensus 306 ~sR~l~~~a~~g~lP~~~~~~~-~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~ 384 (461)
T PRK10746 306 CGRMLYALAKNRQLPAAMAKVS-RHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLR 384 (461)
T ss_pred HHHHHHHHHhCCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 889999999987644322 1111 247889999999999999999999999
Q ss_pred HHhccCCCCCCCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccchHH
Q 007913 448 RRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLP 527 (585)
Q Consensus 448 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 527 (585)
+|+++|+. .++++||.|..|+.+
T Consensus 385 ~r~~~~~~---------------------------------------------------------~~~~~~~~~~~p~~~ 407 (461)
T PRK10746 385 FRRAHKAA---------------------------------------------------------IASHPFRSILFPWAN 407 (461)
T ss_pred HHHhcccc---------------------------------------------------------ccCCCCcCCCccHHH
Confidence 99986642 233567888888888
Q ss_pred HHHHHHHHHHHhcC--C---HHHHHHHHHHHHHHHHHHHHhhccc
Q 007913 528 SLSIAMNLFLIGSL--G---YLAFLRFIICSAVMLVYYLLVGLHA 567 (585)
Q Consensus 528 ~~~~~~~~~~~~~~--~---~~~~~~~~~~~~i~~~~y~~~~~~~ 567 (585)
.++++.++.++..+ . ..+....+.++++..+.|+.|++.+
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 452 (461)
T PRK10746 408 YLTMAFLICVLIGMYFNEDTRMSLFVGIIFLLAVTLIYKVFGLNR 452 (461)
T ss_pred HHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 88877777764433 1 1344455667777888887776544
No 6
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=5.8e-54 Score=452.74 Aligned_cols=422 Identities=23% Similarity=0.314 Sum_probs=347.1
Q ss_pred CCccccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHH
Q 007913 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (585)
Q Consensus 72 ~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 150 (585)
++++||+++.++.++++++.++|+|+|..++.+....++|. .+++|+++++++++.+++++|+++++|++||.|.|+++
T Consensus 3 ~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~ 82 (445)
T PRK11357 3 SQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKN 82 (445)
T ss_pred cccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHH
Confidence 56799999999999999999999999999998776635554 78999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhh
Q 007913 151 ELGDFVAYIAAGNIL-LEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTR 229 (585)
Q Consensus 151 ~~g~~~g~~~g~~~~-l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 229 (585)
.+||.+||+.||..+ .......+..+...++|+....+ .++ .....++.+++++++.+|++|+|
T Consensus 83 ~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~-~~~--------------~~~~~~~~~~~~~~~~ln~~gv~ 147 (445)
T PRK11357 83 AGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTP-IDP--------------LLGKFIAAGLIIAFMLLHLRSVE 147 (445)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Cch--------------HHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999754 45566677777788888766444 110 01235666777788899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhheecccCCCCCCC-----CCcC-hhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCC
Q 007913 230 RSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPF-----LPYG-TEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRD 303 (585)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~g-~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ 303 (585)
..+++|++++.+|++.++++++.++...+.+|+... ...+ +.+++.++...+|+|.|+|.+++++||+|||+||
T Consensus 148 ~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~ 227 (445)
T PRK11357 148 GGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKT 227 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcccc
Confidence 999999999999998887777666543333333211 1112 4567888899999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 007913 304 IPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQI--GMNWAKYLVSVCALKGMTTSLLVGSLGQARYT 380 (585)
Q Consensus 304 ~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 380 (585)
+|||+..++.+++++|++.+++.....|.+++.. ++|+.++++.. .+++...++.+..+++.+++.++.+.+.+|++
T Consensus 228 iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~ 307 (445)
T PRK11357 228 MPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLE 307 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 9999999999999999999999888888887653 56888887753 34566677777888889999999999999999
Q ss_pred HHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCc
Q 007913 381 TQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPKNN 460 (585)
Q Consensus 381 ~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~ 460 (585)
|+|||||.+|++|+|+|||+++|++|++++++++.++.+..+++.+.++.+....+.|.+...+.+++|++++
T Consensus 308 ~a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~~------- 380 (445)
T PRK11357 308 YAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRDD------- 380 (445)
T ss_pred HHHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHheeecCCC-------
Confidence 9999999999999999999999999999999999888888889999999888889999998888887775521
Q ss_pred hhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccchHHHHHHHHHHHHHhc
Q 007913 461 LVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGS 540 (585)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 540 (585)
.+++||.|..|+++.++++.++++...
T Consensus 381 -----------------------------------------------------~~~~~k~p~~~~~~~~~~~~~~~~~~~ 407 (445)
T PRK11357 381 -----------------------------------------------------YKPLWRTPAFGLMTTLAIASSLILVAS 407 (445)
T ss_pred -----------------------------------------------------CCCCcccCCchHHHHHHHHHHHHHHHH
Confidence 224588888899999998888877542
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHHHhhcccc
Q 007913 541 ----LGYLAFLRFIICSAVMLVYYLLVGLHAT 568 (585)
Q Consensus 541 ----~~~~~~~~~~~~~~i~~~~y~~~~~~~~ 568 (585)
....++...+.++++|+.+|+.+++|++
T Consensus 408 ~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 439 (445)
T PRK11357 408 TFVWAPIPGLICAVIVIATGLPAYAFWAKRSR 439 (445)
T ss_pred HHHcCcHHHHHHHHHHHHHhhhHHhheechhh
Confidence 2434455668888899999977666543
No 7
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=3.9e-53 Score=445.46 Aligned_cols=426 Identities=29% Similarity=0.516 Sum_probs=371.5
Q ss_pred cccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhch
Q 007913 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGD 154 (585)
Q Consensus 75 l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~ 154 (585)
+||++|.++.+++.++.++|+|++..++..... +|+..+++|++++++.++.+++++|+++++|++||.|.|+++.+||
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~-~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~ 79 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGK-AGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGE 79 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCc
Confidence 579999999999999999999999999988776 8898889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--CCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhh
Q 007913 155 FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSN--NSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (585)
Q Consensus 155 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 232 (585)
..|++.||.+++.+....+..+..+++++..+++.. +.+.+.. ..+.+.......+++++++++.+|++|.|..+
T Consensus 80 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~ 156 (429)
T TIGR00909 80 LTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLT---AKPGNGGVFNLPALLIVLFLTYILYLGAKESG 156 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhh---cCCcccccccHHHHHHHHHHHHHHHhCcHHHH
Confidence 999999999999999999999999999998877511 1111100 00001111224567788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhheecccCCCCCCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHH
Q 007913 233 WLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSM 312 (585)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~ 312 (585)
|++.+++.++++.++++++.++.+.+.+|+.++.|.+..++..++...+|+|.|+|...+++||+|||+|++||+++.+.
T Consensus 157 ~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~ 236 (429)
T TIGR00909 157 KVNDILVVLKVAALLLFAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSL 236 (429)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHH
Confidence 99999999999988777776666666667777667777788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccc-cccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCch
Q 007913 313 CMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP 391 (585)
Q Consensus 313 ~~~~~~y~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~ 391 (585)
.++.++|++..+......|.+++. +++|+..+.++.++++...++.+..+++.+++.++.+.+.||+++++||||.+|+
T Consensus 237 ~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~ 316 (429)
T TIGR00909 237 IVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPG 316 (429)
T ss_pred HHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 999999999999988888877764 3468888888888899999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHH
Q 007913 392 WFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPKNNLVKFLVCLTVV 471 (585)
Q Consensus 392 ~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~ 471 (585)
+|+|+|||+++|++|++++++++.++....+++.+.++.+...++.|.+.+++.+++|+|+|+.
T Consensus 317 ~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~~---------------- 380 (429)
T TIGR00909 317 SLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDI---------------- 380 (429)
T ss_pred HHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----------------
Confidence 9999999999999999999999988877778999999999999999999999999999875543
Q ss_pred HHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccchHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007913 472 VASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFII 551 (585)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (585)
+++||.|..|+++.+.+..++++....++..+....+
T Consensus 381 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (429)
T TIGR00909 381 -------------------------------------------QRAFRCPLVPVLPVLVVSYCIYLLLNLGPGTTVWFLV 417 (429)
T ss_pred -------------------------------------------CCCCCCCcchHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 3456777788888888888888888888888889999
Q ss_pred HHHHHHHHHHHh
Q 007913 552 CSAVMLVYYLLV 563 (585)
Q Consensus 552 ~~~i~~~~y~~~ 563 (585)
|..+|..+|.+|
T Consensus 418 ~~~~g~~~y~~~ 429 (429)
T TIGR00909 418 WMLLGSVFYFIY 429 (429)
T ss_pred HHHHHHHHHHcC
Confidence 999999999754
No 8
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=1.9e-53 Score=448.16 Aligned_cols=420 Identities=17% Similarity=0.254 Sum_probs=345.6
Q ss_pred cccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhch
Q 007913 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGD 154 (585)
Q Consensus 75 l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~ 154 (585)
+||++|.++++++++++++|+|+|..|+... . +|+..+++|++++++.++.+++++|+++++|++||.|.|+++.+||
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~-~-~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~ 81 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLA-Q-VGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGK 81 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHH-H-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCc
Confidence 5789999999999999999999999988754 4 7888889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHH
Q 007913 155 FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWL 234 (585)
Q Consensus 155 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 234 (585)
..||++||.+++.+.......+....+|+...++ ...+.+ ...++.++++++++.+|++|+|..+++
T Consensus 82 ~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~-~~~~~~------------~~~~~~~~~l~~~~~ln~~g~~~~~~i 148 (438)
T PRK10655 82 SGNFMANYTYGVSLLIANVAIAISAVGYGTELFG-ATLSPV------------QICLATIGVLWLCTVANFGGARITGQI 148 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccchH------------HHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 9999999999999988777777777788877665 221111 123556677788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhheecccCCCCC-CCCCcC---hhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHH
Q 007913 235 NWISSIVSSCVIVFVIIVGFVHGKTTNLD-PFLPYG---TEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVG 310 (585)
Q Consensus 235 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~g---~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~ 310 (585)
|++.+..+++.++++.+.++...+.+|+. ++.+.+ +.++..++...+|+|.|+|.+++++||+|||+||+|||++.
T Consensus 149 ~~i~~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~ 228 (438)
T PRK10655 149 SSVTVWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLG 228 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHH
Confidence 99999999888877777665554555543 233333 25677788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccc-cccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCC
Q 007913 311 SMCMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMI 389 (585)
Q Consensus 311 ~~~~~~~~y~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~l 389 (585)
+..+++++|++...+.....|++++. +++|+.+++++..+++...++.+..+++.+++.++.+.+.+|+++++||||.+
T Consensus 229 ~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~l 308 (438)
T PRK10655 229 GTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYF 308 (438)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 99999999999998888888887764 35688888888777888888888889999999999999999999999999999
Q ss_pred chhhhccCCCCCchHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCchh
Q 007913 390 PPWFALVHPKTQTPINATLLVTTLSAIIALF-------SSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPKNNLV 462 (585)
Q Consensus 390 P~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~ 462 (585)
|++|+|+| |+++|++|++++.+++.++.+. ..++.+.++.+...++.|.+.+++.+++|+|+|+.+|+
T Consensus 309 P~~~~~v~-~~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~~~~~---- 383 (438)
T PRK10655 309 PKIFSRVT-KVDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVPPSK---- 383 (438)
T ss_pred hHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcch----
Confidence 99999999 6799999999999887665553 35889999999999999999999999999886654332
Q ss_pred HHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccchHHHHHHHHHHHHHhcCC
Q 007913 463 KFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGSLG 542 (585)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 542 (585)
||.+ +.++.++.+.+++++...+
T Consensus 384 -------------------------------------------------------~~~~--~~~~~~~~~~~~~~~~~~~ 406 (438)
T PRK10655 384 -------------------------------------------------------AKVA--NFIAFVGALYSFYALYSSG 406 (438)
T ss_pred -------------------------------------------------------hHHH--HHHHHHHHHHHHHHHHHhh
Confidence 2221 2455555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccch
Q 007913 543 YLAFLRFIICSAVMLVYYLLVGLHATYDV 571 (585)
Q Consensus 543 ~~~~~~~~~~~~i~~~~y~~~~~~~~~~~ 571 (585)
..+.....+++++|.++|.++.||+..++
T Consensus 407 ~~~~~~~~~~~~~g~~~y~~~~~~~~~~~ 435 (438)
T PRK10655 407 EEAMLYGSIVTFLGWTLYGLISPRFELKN 435 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 44555668888999999977666554433
No 9
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=3.9e-53 Score=446.17 Aligned_cols=419 Identities=21% Similarity=0.295 Sum_probs=341.0
Q ss_pred CCccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHH
Q 007913 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (585)
Q Consensus 72 ~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~ 151 (585)
+.+++|++|.+++++++++.++|+|+|..++.... .|+..+++|+++++.+++.+++++||++++|++||.|.|+++.
T Consensus 3 ~~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~--~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~ 80 (445)
T PRK10644 3 SDADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAS--TGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRC 80 (445)
T ss_pred CCccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHH
Confidence 34578999999999999999999999999988654 3555789999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhh
Q 007913 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRS 231 (585)
Q Consensus 152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 231 (585)
+||.+||++||.+|+.+.............+....++ ..+..+ ...+.+.+++++++.+|++|+|..
T Consensus 81 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------------~~~~~~~~~~~~~~~ln~~gvk~~ 147 (445)
T PRK10644 81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFP-ILKDPL------------VLTITCVVVLWIFVLLNIVGPKMI 147 (445)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCcH------------HHHHHHHHHHHHHHHHHHhchHHH
Confidence 9999999999999998887777666666667666554 111111 123566777788999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhheecccCCCCCC-CCC---cChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhH
Q 007913 232 SWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDP-FLP---YGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIG 307 (585)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~---~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~a 307 (585)
+++|++++.++++.++++.+.++...+.+++.+ +.+ .++.++..++...+|+|.|+|.+++++||+|||+|++|||
T Consensus 148 ~~i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPra 227 (445)
T PRK10644 148 TRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIA 227 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHH
Confidence 999999999999888777776655444333322 211 2345677788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccc-cccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhc
Q 007913 308 LVGSMCMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARA 386 (585)
Q Consensus 308 i~~~~~~~~~~y~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ard 386 (585)
++.++.+++++|++..++.....|++++. +++|+.++++...+++...++.+..+++.+++.++.+...+|++++||||
T Consensus 228 i~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ard 307 (445)
T PRK10644 228 TIGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD 307 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999888887765 45799888887777888888888888999999999999999999999999
Q ss_pred CCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 007913 387 HMIPPWFALVHPKTQTPINATLLVTTLSAIIALF-------SSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPKN 459 (585)
Q Consensus 387 g~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~ 459 (585)
|.+|++|+|+| |+++|++|++++++++.++.+. ..++.+.++.+.+.++.|.+.+++.+++|+|+++.++
T Consensus 308 g~lP~~~~~v~-~~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~-- 384 (445)
T PRK10644 308 GLFPPIFARVN-KAGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKAR-- 384 (445)
T ss_pred CCccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc--
Confidence 99999999999 5799999999999998776654 2488899999999999999999999998877542111
Q ss_pred chhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccchHHHHHHHHHHHHHh
Q 007913 460 NLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIG 539 (585)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 539 (585)
|..|+++.++++.+++++.
T Consensus 385 -------------------------------------------------------------p~~~~~~~~~~~~~~~~~~ 403 (445)
T PRK10644 385 -------------------------------------------------------------PAYLAVTLIAFVYCIWAVV 403 (445)
T ss_pred -------------------------------------------------------------cchhHHHHHHHHHHHHHHH
Confidence 2346777788888877777
Q ss_pred cCCHHHHHHHHHHHHHHHHHH-HHhhccccc
Q 007913 540 SLGYLAFLRFIICSAVMLVYY-LLVGLHATY 569 (585)
Q Consensus 540 ~~~~~~~~~~~~~~~i~~~~y-~~~~~~~~~ 569 (585)
..+..+.....++..++.+.| +.++|||++
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 434 (445)
T PRK10644 404 GSGAKEVMWSFVTLMVITAFYALNYNRLHKN 434 (445)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 666555555555566666666 445544443
No 10
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=5.4e-53 Score=445.31 Aligned_cols=420 Identities=23% Similarity=0.326 Sum_probs=348.0
Q ss_pred CCccccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHH
Q 007913 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (585)
Q Consensus 72 ~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 150 (585)
++++||+++.++.++++++.++| |.+...+..... +||. .++++++++++.++.+++++|+++++|++||.|.|+++
T Consensus 2 ~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~~~-~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~ 79 (442)
T TIGR00908 2 HRQLKKTLATWQLWGIGVGYVIS-GDYAGWNFGLAQ-GGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARR 79 (442)
T ss_pred CchhhccCCHHHHHHhHHHHHhh-ccchhHhhHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 56799999999999999999997 777776666655 8885 78899999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhh
Q 007913 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (585)
Q Consensus 151 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (585)
.+||..||++||.+++.+....+.++..+++|+...++ ..+ ....+.+++++++.+|++|+|.
T Consensus 80 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p-~~~----------------~~~~~~~~~~~~~~ln~~g~~~ 142 (442)
T TIGR00908 80 AFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFP-VGP----------------GWLAALVFYIVFIGINILGVGE 142 (442)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCc----------------hhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988765 110 1256677788889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhheecccCCCC--------CCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCC
Q 007913 231 SSWLNWISSIVSSCVIVFVIIVGFVHGKTTNL--------DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSR 302 (585)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r 302 (585)
.++++.++..++++.++++......+.+..|+ .++.+.++.+++.++..++|+|.|+|.+++++||+|||+|
T Consensus 143 ~~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r 222 (442)
T TIGR00908 143 AAKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKR 222 (442)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999998888766555443333222221 2344556678888999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhcccccccc-cccHHHHHHHHh-Cc-HHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 007913 303 DIPIGLVGSMCMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQI-GM-NWAKYLVSVCALKGMTTSLLVGSLGQARY 379 (585)
Q Consensus 303 ~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 379 (585)
|+|||++.+..++.++|+..........+.+++. .++|+.++++.. ++ .+...++.+..+++.+++.++.+++.+|+
T Consensus 223 ~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~ 302 (442)
T TIGR00908 223 DIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQ 302 (442)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998877766666766664 456888888865 32 45667777778888899999999999999
Q ss_pred HHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 007913 380 TTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPKN 459 (585)
Q Consensus 380 l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~ 459 (585)
+++|||||.+|++|+|+| |+|+|++|++++++++.++.+..+.+.+.++.+.+.++.|.+.+++++++|+++|+
T Consensus 303 l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p~----- 376 (442)
T TIGR00908 303 IFALSRAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPD----- 376 (442)
T ss_pred HHHHHhcCCccHHHHHhC-CCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----
Confidence 999999999999999999 99999999999999998887777778888999999999999999999999988554
Q ss_pred chhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccchHHHHHHHHHHHHHh
Q 007913 460 NLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIG 539 (585)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 539 (585)
.+++||.|..|+.+.++++.+++++.
T Consensus 377 ------------------------------------------------------~~rp~~~p~~~~~~~l~~~~~~~~l~ 402 (442)
T TIGR00908 377 ------------------------------------------------------MERPYRTPGGILTPGVALVLACVALV 402 (442)
T ss_pred ------------------------------------------------------CCCCccCCCcchHHHHHHHHHHHHHH
Confidence 34467778788888888887776665
Q ss_pred cC---CHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 007913 540 SL---GYLAFLRFIICSAVMLVYYLLVGLHATYD 570 (585)
Q Consensus 540 ~~---~~~~~~~~~~~~~i~~~~y~~~~~~~~~~ 570 (585)
.+ ++..+....++.++..++|++|+|+|+.+
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 436 (442)
T TIGR00908 403 TGFYVDPRVVVGAVAIFVVLIGYYFLYSRHHLVS 436 (442)
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHhhhhchhhc
Confidence 43 44344445677777788888887766544
No 11
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=1.2e-52 Score=442.34 Aligned_cols=365 Identities=21% Similarity=0.331 Sum_probs=317.9
Q ss_pred cCCccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHH
Q 007913 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (585)
Q Consensus 71 ~~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 150 (585)
.++++||+++.+|+.++++++++|+|+|..++..++. +||..+++|++++++.++++++++|+++++|.+||.|+|+++
T Consensus 6 ~~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~-~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~ 84 (456)
T PRK10238 6 HGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQS-AGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYK 84 (456)
T ss_pred cchhhhccCcHHHHHHHHhhccccchHHHhhHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 4557899999999999999999999999999999887 899989999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhh
Q 007913 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (585)
Q Consensus 151 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (585)
.+||..||++||.+++++....+......+++++.+.+ . .+ .+....+++++++.+|++|+|.
T Consensus 85 ~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p-~-~~---------------~~~~~~i~~~~~~~lN~~gv~~ 147 (456)
T PRK10238 85 YWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYP-E-IP---------------TWVSAAVFFVVINAINLTNVKV 147 (456)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-c-Cc---------------HHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999988888888876654 1 11 1255667778899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhee---cc--c----CCC---CCCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhc
Q 007913 231 SSWLNWISSIVSSCVIVFVIIVGFV---HG--K----TTN---LDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETK 298 (585)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~~---~~--~----~~~---~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k 298 (585)
.+++|.+++.+|+..++++++.++. .. . ..+ ..++.|+++.++..++...+|+|.|+|.+++++||+|
T Consensus 148 ~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~k 227 (456)
T PRK10238 148 FGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEAD 227 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Confidence 9999999999999877655543321 11 0 111 1234566777888888889999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007913 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQA 377 (585)
Q Consensus 299 ~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 377 (585)
||+|++|||+..++....+.|+..........|++++.. ++|+.+++++.+.++...++.+..+.+.+++.++.+++.|
T Consensus 228 nP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~s 307 (456)
T PRK10238 228 NPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNS 307 (456)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887777788887753 5799999999998888899999999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007913 378 RYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF------SSLNILSSVFSFSTLSIFMLMAIALLVRRYY 451 (585)
Q Consensus 378 R~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~ 451 (585)
|++|+|||||.+|++|+|+| |+++|++|++++++++.+..+. ..++.+.++.+.+.++.|.+.+++.+++|++
T Consensus 308 R~l~a~ardg~lP~~f~kv~-~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~ 386 (456)
T PRK10238 308 RMLFGLAQQGNAPKALASVD-KRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRA 386 (456)
T ss_pred HHHHHHHhCCCccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 6799999999999988766554 4588999999999999999999999999988
Q ss_pred cCC
Q 007913 452 EKD 454 (585)
Q Consensus 452 ~~~ 454 (585)
+++
T Consensus 387 ~~~ 389 (456)
T PRK10238 387 KQE 389 (456)
T ss_pred HHh
Confidence 654
No 12
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=1.1e-52 Score=443.91 Aligned_cols=420 Identities=18% Similarity=0.324 Sum_probs=342.3
Q ss_pred cCCccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHH
Q 007913 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (585)
Q Consensus 71 ~~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 150 (585)
+++++||+++.+++++++++.++|+|+|..++...+. +||..+++|++++++.++++++++|+++++|++||.|.|+++
T Consensus 3 ~~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~-aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~ 81 (457)
T PRK10580 3 SKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKM-AGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQE 81 (457)
T ss_pred CCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3467899999999999999999999999999998876 999999999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhh
Q 007913 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (585)
Q Consensus 151 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (585)
.+||.+||++||.+++.+....+......+.++..+++.. + .....++++++...+|++|+|.
T Consensus 82 ~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~-----~~~~~~~~~~l~~~ln~~gv~~ 144 (457)
T PRK10580 82 NLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTV------------P-----HWIWVLSVVLIICAVNLMSVKV 144 (457)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------------C-----hHHHHHHHHHHHHHHHHccchh
Confidence 9999999999999999998877777777777776655410 0 1244566677889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhee-------cc-cCC---C-C--CCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhh
Q 007913 231 SSWLNWISSIVSSCVIVFVIIVGFV-------HG-KTT---N-L--DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEE 296 (585)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~~-------~~-~~~---~-~--~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E 296 (585)
.+++|.+++.+|+..++++++.++. .. +.. + + .++.|+++.+++.++..++|+|.|+|.+++++||
T Consensus 145 ~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E 224 (457)
T PRK10580 145 FGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGE 224 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 9999999999999877666544321 11 111 1 1 1244667778889999999999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007913 297 TKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLG 375 (585)
Q Consensus 297 ~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (585)
+|||+||+|||++.+...+.++|++..+......|.+++.. ++|+..+++..+.++...++.+..+.+.+++.++.+++
T Consensus 225 ~knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (457)
T PRK10580 225 AKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFG 304 (457)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888888887753 46888888888888888888888899999999999999
Q ss_pred hhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007913 376 QARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF------SSLNILSSVFSFSTLSIFMLMAIALLVRR 449 (585)
Q Consensus 376 ~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r 449 (585)
.||++++|||||.+|++|+|+| |+++|++|+++++++..+...+ ..++.+.++.+...++.|.+.+++.+++|
T Consensus 305 ~sR~~~~~ardg~lP~~~~kv~-~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~lr 383 (457)
T PRK10580 305 VGRMLHGMAEQGSAPKIFSKTS-RRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFR 383 (457)
T ss_pred HHHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 6899999999997755443222 34778999999999999999999999999
Q ss_pred hccCCCCCCCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccchHHHH
Q 007913 450 YYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSL 529 (585)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 529 (585)
+++++.+ .++++||.|..|+.+.+
T Consensus 384 ~~~~~~~--------------------------------------------------------~~~~~f~~~~~~~~~~~ 407 (457)
T PRK10580 384 RRLPPEE--------------------------------------------------------VKALKFKVPGGVATTIG 407 (457)
T ss_pred HHHHhcC--------------------------------------------------------CCCCCcccCCccHHHHH
Confidence 8854321 22335666666666666
Q ss_pred HHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHhhc
Q 007913 530 SIAMNLFLIGSL-----GYLAFLRFIICSAVMLVYYLLVGL 565 (585)
Q Consensus 530 ~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~y~~~~~ 565 (585)
+++.+++++..+ ...+......|++++.+.|..++|
T Consensus 408 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~~ 448 (457)
T PRK10580 408 GLIFLVFIIGLIGYHPDTRISLYVGFAWIVLLLIGWMFKRR 448 (457)
T ss_pred HHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666666554332 112334567788888888877654
No 13
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=1.2e-52 Score=446.63 Aligned_cols=400 Identities=19% Similarity=0.233 Sum_probs=327.6
Q ss_pred cCCccccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHH
Q 007913 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLR 149 (585)
Q Consensus 71 ~~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~ 149 (585)
+++++||+++.++++++++|+++|+|+|..++..+.. +||. .+++|+++++++++.+++++||++++|++||.|.|++
T Consensus 9 ~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~-aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~ 87 (489)
T PRK10836 9 EAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQ-AGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQ 87 (489)
T ss_pred CcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence 4467899999999999999999999999999999887 8996 8999999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhh
Q 007913 150 VELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTR 229 (585)
Q Consensus 150 ~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 229 (585)
+.+|+.+||++||.+++.+....+........++..+++ +.+ ....+.+++++++.+|++|+|
T Consensus 88 ~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~------------~~~-----~~~~~~~~~~~~~~lN~~gv~ 150 (489)
T PRK10836 88 NYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFP------------DTP-----GWIWSALFLGVIFLLNYISVR 150 (489)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC------------CCc-----hHHHHHHHHHHHHHHHHHcch
Confidence 999999999999999998877666544444434433332 000 124456667778899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhheec------cc----CCCCC---CCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhh
Q 007913 230 RSSWLNWISSIVSSCVIVFVIIVGFVH------GK----TTNLD---PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEE 296 (585)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~----~~~~~---~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E 296 (585)
..+++|.+++.+|+..++.+++.++.. .+ .+|+. +..++++.+++.+....+|+|.|+|.+++++||
T Consensus 151 ~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E 230 (489)
T PRK10836 151 GFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGE 230 (489)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 999999999999998776655443321 11 12222 112345566666666678999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccc---------cccHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Q 007913 297 TKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEID---------MNAAYSIAFRQIGMNWAKYLVSVCALKGMTT 367 (585)
Q Consensus 297 ~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (585)
+|||+||+|||++.++..+.++|++..+.+...+|.++.+ ..+|+..+++..+.++...++.+..+++.++
T Consensus 231 ~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~il~a~~~ 310 (489)
T PRK10836 231 SEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLS 310 (489)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988888865431 1368888899888888889999999999999
Q ss_pred HHHHhhhhhhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHH
Q 007913 368 SLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF------SSLNILSSVFSFSTLSIFMLM 441 (585)
Q Consensus 368 ~~~~~~~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~ 441 (585)
+.++.+++.||++|+|||||.+|++|+|+| |+++|++|++++++++.+..+. ..++.+.++.+...++.|.+.
T Consensus 311 ~~n~~~~~~sR~l~a~Ardg~lP~~~~kv~-~~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y~~~ 389 (489)
T PRK10836 311 AGNSGMYASTRMLYTLACDGKAPRIFAKLS-RGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGI 389 (489)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 6799999999999988766554 236778899999999999999
Q ss_pred HHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCccc
Q 007913 442 AIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVP 521 (585)
Q Consensus 442 ~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (585)
+++.+++|++.+++.+ +.++++||.|
T Consensus 390 ~~a~l~~R~~~~~~~~------------------------------------------------------~~~~~p~~~p 415 (489)
T PRK10836 390 AISHYRFRRGYVLQGH------------------------------------------------------DLNDLPYRSG 415 (489)
T ss_pred HHHHHHHHHHHHhcCC------------------------------------------------------CcCCCCCcCC
Confidence 9999999886432211 1123578899
Q ss_pred ccchHHHHHHHHHHHHHhcCCH
Q 007913 522 LVPWLPSLSIAMNLFLIGSLGY 543 (585)
Q Consensus 522 ~~p~~~~~~~~~~~~~~~~~~~ 543 (585)
..|+.+.++++.+++++....+
T Consensus 416 ~~p~~~~~~~~~~~~~~~~~~~ 437 (489)
T PRK10836 416 FFPLGPIFAFVLCLIITLGQNY 437 (489)
T ss_pred CccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888775443
No 14
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=1.5e-52 Score=442.83 Aligned_cols=367 Identities=20% Similarity=0.265 Sum_probs=316.0
Q ss_pred CCccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHH
Q 007913 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (585)
Q Consensus 72 ~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~ 151 (585)
+.++||+++.+|+.+++++.++|+|+|..++..... +||..+++|++++++.++.+++++||++++|++||.|.|+++.
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~-~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~ 85 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIAS-AGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDA 85 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 456899999999999999999999999999999887 8998889999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhh
Q 007913 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRS 231 (585)
Q Consensus 152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 231 (585)
+||.+||++||.+++++....+......+.++..+++ .. ..+.++.+++++.+.+|++|+|..
T Consensus 86 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~-~~----------------~~~~~~~~~~~~~~~~n~~gv~~~ 148 (452)
T TIGR01773 86 IGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFP-DI----------------PLWLFSLILTIVLTLTNLYSVKSY 148 (452)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cC----------------cHHHHHHHHHHHHHHHHHHhcchh
Confidence 9999999999999999999999988888888877654 11 123677788888899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhheec---c----cC---CCC---CCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhc
Q 007913 232 SWLNWISSIVSSCVIVFVIIVGFVH---G----KT---TNL---DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETK 298 (585)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~~~~---~----~~---~~~---~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k 298 (585)
+++|.+++.+|++.++++++.++.. . +. .++ .++.|+++.++..++...+|+|.|+|.+++++||+|
T Consensus 149 ~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k 228 (452)
T TIGR01773 149 GEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESS 228 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhc
Confidence 9999999999998876666554321 1 11 111 234456777899999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccc--cccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007913 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEID--MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQ 376 (585)
Q Consensus 299 ~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (585)
||+||+|||+..+.....++|++.........|+++.+ +++|+.++.+..++++...++.+..+++.+++.++.+++.
T Consensus 229 ~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~ 308 (452)
T TIGR01773 229 NPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTT 308 (452)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888777777766543 2348888888888888889999999999999999999999
Q ss_pred hHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007913 377 ARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF------SSLNILSSVFSFSTLSIFMLMAIALLVRRY 450 (585)
Q Consensus 377 sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~ 450 (585)
||++++|||||.+|++|+|+| |+++|++|++++.+++.+..+. ..++.+.++.+...++.|.+.+++.+++|+
T Consensus 309 sR~~~a~ardg~lP~~~~~v~-~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r~ 387 (452)
T TIGR01773 309 SRMLYSLAERGDAPRVFMKLN-KKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMRK 387 (452)
T ss_pred HHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 7899999999999888765544 236778888888889999999999999998
Q ss_pred ccCCCCC
Q 007913 451 YEKDVTP 457 (585)
Q Consensus 451 ~~~~~~~ 457 (585)
+.|+.++
T Consensus 388 ~~~~~~~ 394 (452)
T TIGR01773 388 KLKANGE 394 (452)
T ss_pred HHHhcCC
Confidence 8665433
No 15
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=9.3e-53 Score=413.99 Aligned_cols=421 Identities=20% Similarity=0.335 Sum_probs=367.2
Q ss_pred cCCccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHH
Q 007913 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (585)
Q Consensus 71 ~~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 150 (585)
+++++||.|+.+|...+++|+.||+|+|...+...+. +||+.+++++++|++.+.++-.++||...-|++|+..+|+++
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~-AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~ 85 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAM-AGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARK 85 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhh-hCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHH
Confidence 4556999999999999999999999999999999887 999999999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhh
Q 007913 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (585)
Q Consensus 151 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (585)
.+||..||++||.||+.++....+...+.+.|++.++++. + .++.+++++++...+|..++|.
T Consensus 86 ~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v--P---------------~Wv~al~~~~l~~~~NL~sVk~ 148 (462)
T COG1113 86 YLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV--P---------------QWVFALAAVVLLLAVNLISVKV 148 (462)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--c---------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999822 2 2478889999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhheec------c-----cCCCC---CCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhh
Q 007913 231 SSWLNWISSIVSSCVIVFVIIVGFVH------G-----KTTNL---DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEE 296 (585)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~~~------~-----~~~~~---~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E 296 (585)
.+.++..+..+|+..++.+++.++.. . +.+|. .+|+|+|+.|++.++...+|+|.|.|.+...++|
T Consensus 149 FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~E 228 (462)
T COG1113 149 FGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAE 228 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 99999999999999998888776541 1 12232 2789999999999999999999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007913 297 TKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLG 375 (585)
Q Consensus 297 ~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (585)
.|||+|.+|||+..-.....++|+....++....|+++.++ ++|+...++..|.++...++++.++.+.++++|+.+++
T Consensus 229 t~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglys 308 (462)
T COG1113 229 AKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYS 308 (462)
T ss_pred hcChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccc
Confidence 99999999999999999999999999999999999998765 56999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007913 376 QARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF------SSLNILSSVFSFSTLSIFMLMAIALLVRR 449 (585)
Q Consensus 376 ~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r 449 (585)
.+|++|++|+||..||.|+|+| |+++|++|++++++...+-..+ ..|+.+.+..+.+.+..|.++.++.+++|
T Consensus 309 tsRmL~~la~~g~APk~~~kls-k~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~r 387 (462)
T COG1113 309 TSRMLYSLAKQGDAPKAFAKLS-KRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLR 387 (462)
T ss_pred cchHHHHHhhcCcccHhHhhcc-ccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 8899999999988776544444 45899999999999999999999999999
Q ss_pred hccCCCCCCCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccchHHHH
Q 007913 450 YYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSL 529 (585)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 529 (585)
+++++. .++.+||.|..|+...+
T Consensus 388 k~~~~~---------------------------------------------------------~~~~~fkm~~~p~~~~l 410 (462)
T COG1113 388 KAKPAE---------------------------------------------------------GKKLKFKMPLYPFTNYL 410 (462)
T ss_pred hcchhc---------------------------------------------------------ccCcccccccccHHHHH
Confidence 954432 23335777777777777
Q ss_pred HHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHhhccc
Q 007913 530 SIAMNLFLIGSL-----GYLAFLRFIICSAVMLVYYLLVGLHA 567 (585)
Q Consensus 530 ~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~y~~~~~~~ 567 (585)
++++-.+++..| ...+.....+|+++-.+.|..+++|+
T Consensus 411 ~l~fl~~vlv~m~~~~~t~~~~~~~~~~~~~l~i~~~~~~~~~ 453 (462)
T COG1113 411 TLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVKRKKK 453 (462)
T ss_pred HHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 766665555443 11234455667776666665555444
No 16
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=6.7e-52 Score=438.60 Aligned_cols=366 Identities=17% Similarity=0.284 Sum_probs=314.7
Q ss_pred CCccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHH
Q 007913 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (585)
Q Consensus 72 ~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~ 151 (585)
++++||+++.+++.++++|.+||+|+|..++..++. +||..+++|++++++.++++.+++|+++..|..|+.|.|+++.
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~-aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~ 93 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISL-AGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDL 93 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 356999999999999999999999999999999887 8998899999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhh
Q 007913 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRS 231 (585)
Q Consensus 152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 231 (585)
+||..||++||.+++++....+..+...+.++..+++. . + ....+.+++++++.+|++|+|..
T Consensus 94 ~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~-~-~---------------~~~~~~~~~~~~~~iN~~g~~~~ 156 (469)
T PRK11049 94 LGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPD-L-S---------------DWVASLAVVLLLLSLNLATVKMF 156 (469)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C-c---------------HHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999877777777777777765541 1 0 12455667788899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhheecc-----cC----CCC------CCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhh
Q 007913 232 SWLNWISSIVSSCVIVFVIIVGFVHG-----KT----TNL------DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEE 296 (585)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~----~~~------~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E 296 (585)
+++|++.+.+|+..++++++.++... +. .++ .++.|+++.+++.++...+|+|.|+|.+++++||
T Consensus 157 ~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E 236 (469)
T PRK11049 157 GEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAE 236 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 99999999999988887777655421 01 111 2344667778999999999999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007913 297 TKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLG 375 (585)
Q Consensus 297 ~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (585)
+|||+||+||++..+.+.+.++|++.........|++++.. ++|+.++++..++++...++.+..+++.+++.++.+++
T Consensus 237 ~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~ 316 (469)
T PRK11049 237 TKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFS 316 (469)
T ss_pred hcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888899999999999888888887753 47999988888889889999999999999999999999
Q ss_pred hhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHH---HHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007913 376 QARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAII---ALF-----SSLNILSSVFSFSTLSIFMLMAIALLV 447 (585)
Q Consensus 376 ~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~---~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~l~ 447 (585)
.||++|+|||||.+|++|+|+| |+|+|++|+++++++..+. ... ..++.+.++.+....+.|.+.+++.++
T Consensus 317 ~sR~l~a~ardg~lP~~~~kv~-~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~ 395 (469)
T PRK11049 317 TSRMLFGLAQEGVAPKAFAKLS-KRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLV 395 (469)
T ss_pred HHHHHHHHHhCCCCCHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 5699999999988765431 112 247888888889999999999999999
Q ss_pred HHhccCCCC
Q 007913 448 RRYYEKDVT 456 (585)
Q Consensus 448 ~r~~~~~~~ 456 (585)
+|+++|+.+
T Consensus 396 lr~~~p~~~ 404 (469)
T PRK11049 396 YRKQRPHLH 404 (469)
T ss_pred HHHhhhhcC
Confidence 999877643
No 17
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=9.9e-53 Score=422.40 Aligned_cols=399 Identities=19% Similarity=0.277 Sum_probs=355.4
Q ss_pred ccccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHh
Q 007913 74 PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVEL 152 (585)
Q Consensus 74 ~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~ 152 (585)
++||+|..+|+.++++|+.||+|+|+..|..+.+ +||+ +++++++.|++.++++.+++||+..+|.+|+...|++|..
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~-aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfv 119 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQ-AGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFV 119 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhc
Confidence 6999999999999999999999999999999988 9997 9999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhh
Q 007913 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (585)
Q Consensus 153 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 232 (585)
+|-+||..||+||+.|.+..+....+.+..++.+++ .. .....+..++.++...+|.+|+|..+
T Consensus 120 dpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p-~~---------------v~~~~w~~iF~~~i~~iN~~~Vk~fG 183 (541)
T COG0833 120 DPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFP-DT---------------VPPWIWIAIFLVLIFLLNLFGVKGFG 183 (541)
T ss_pred CchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcC-CC---------------CChHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999999875 11 11247778889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhheecc----cCC-----C-C--CCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCC
Q 007913 233 WLNWISSIVSSCVIVFVIIVGFVHG----KTT-----N-L--DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKP 300 (585)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~i~~~~~~----~~~-----~-~--~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p 300 (585)
..+.++..+|++.++.+++.++... +.+ + + .+.+++|+.++...+..+.|+|.|.|.+...++|.|||
T Consensus 184 E~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP 263 (541)
T COG0833 184 ETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENP 263 (541)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCc
Confidence 9999999999999988888776521 101 1 1 23567789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccc---------cccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Q 007913 301 SRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEID---------MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLV 371 (585)
Q Consensus 301 ~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (585)
+|++|||+.-......++|++..+.+...+|+++.+ ..+|+..++++.|.+.++.+++..++.+.+++.|+
T Consensus 264 ~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS 343 (541)
T COG0833 264 RKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANS 343 (541)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999987732 34699999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHH
Q 007913 372 GSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF------SSLNILSSVFSFSTLSIFMLMAIAL 445 (585)
Q Consensus 372 ~~~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~ 445 (585)
.++++||++|+||+||..||+|+|+| |+|+|.+|++++.+++++-.+- ..|+++.+++++...+.|..+++++
T Consensus 344 ~lYasSR~L~sLA~~g~APk~f~~~~-r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~sh 422 (541)
T COG0833 344 GLYASSRMLYSLAKQGKAPKIFAKVD-RRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSH 422 (541)
T ss_pred cchHHHHHHHHHHhcCCCchHHHhhC-CCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 8899999999999888643333 2689999999999999999999999
Q ss_pred HHHHhccCCCCCCCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccch
Q 007913 446 LVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPW 525 (585)
Q Consensus 446 l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 525 (585)
+++|+..+... +..+.-+||.|..||
T Consensus 423 irFR~A~~~QG------------------------------------------------------~s~~~L~yks~~~p~ 448 (541)
T COG0833 423 IRFRRAMKAQG------------------------------------------------------RSLDELPYKSPFGPY 448 (541)
T ss_pred HHHHHHHHHcC------------------------------------------------------CChhhcCccCCCccH
Confidence 99998754332 233455799999999
Q ss_pred HHHHHHHHHHHHHhcCCHH
Q 007913 526 LPSLSIAMNLFLIGSLGYL 544 (585)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~ 544 (585)
.++.++++++.++...+|.
T Consensus 449 g~~~~~~~~~li~i~q~y~ 467 (541)
T COG0833 449 GPIYGLILCILILIGQGYV 467 (541)
T ss_pred HHHHHHHHHHHHHHHcchh
Confidence 9999999999988875443
No 18
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-53 Score=445.10 Aligned_cols=487 Identities=29% Similarity=0.458 Sum_probs=379.6
Q ss_pred CccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccC-CCchhHhHHHH
Q 007913 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPV-AGGSFSFLRVE 151 (585)
Q Consensus 73 ~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~-~Gg~y~~~~~~ 151 (585)
+++||+|+.+|+.++++|.++|+|+|+..|.++...|||+.+++++++++.+++.+++++|++.++|. +||.|.|+++.
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~ 105 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRF 105 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeee
Confidence 68999999999999999999999999999999988566679999999999999999999999999999 59999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHh-hhhhh
Q 007913 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAM-SGTRR 230 (585)
Q Consensus 152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~g~~~ 230 (585)
.|+.+||.+||++++.|++..++.+.+.+.+++++.+ ...+....++.+...+....+++++++.++.+-. .+.|.
T Consensus 106 i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~---~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef 182 (554)
T KOG1286|consen 106 VGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG---ASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEF 182 (554)
T ss_pred eCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc---cccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceee
Confidence 9999999999999999999999999999999999871 1111111112222333334444444444444443 66777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhheecccCCCCC---------CCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCC
Q 007913 231 SSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLD---------PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPS 301 (585)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~ 301 (585)
...++++++.+.++.+.++++.|....|..|+. +|.|.++.|++.++..++|+|.|+|.++..+||.|||+
T Consensus 183 ~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~ 262 (554)
T KOG1286|consen 183 SLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPR 262 (554)
T ss_pred hHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCc
Confidence 777888888877777777777777776655554 37788899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHhcccccc--cccccHHHHHHH----HhCcHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007913 302 RDIPIGLVGSMCMITAVYCLMALALTMMVKYTE--IDMNAAYSIAFR----QIGMNWAKYLVSVCALKGMTTSLLVGSLG 375 (585)
Q Consensus 302 r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (585)
|++|+|+..++..+.++|++..+.+...+|+++ ++++++....+. ..+.+....+++++++++..+++|+.+++
T Consensus 263 k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~ 342 (554)
T KOG1286|consen 263 KAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYA 342 (554)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999999988 766654444444 44445555699999999999999999999
Q ss_pred hhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007913 376 QARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSS------LNILSSVFSFSTLSIFMLMAIALLVRR 449 (585)
Q Consensus 376 ~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~------~~~l~~~~~~~~~~~~~~~~~~~l~~r 449 (585)
.||.+++||+||++||+|+++|+| |+|++|++++.+++++..+..+ |+++.++.+++.++.|.+++++++++|
T Consensus 343 ~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~i~~~~i~~R 421 (554)
T KOG1286|consen 343 GSRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTLVALSHLRFR 421 (554)
T ss_pred hHHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHHHHHHHeeee
Confidence 999999999999999999999966 9999999999999988777744 599999999999999999999999999
Q ss_pred hccCCCCC-----CCc--hhHHHHHHHHHHHHHhHHhhhccCCC-----c---chHHHHHHHHHHHHHHHHHhcccccCC
Q 007913 450 YYEKDVTP-----KNN--LVKFLVCLTVVVASSIGITAFWNSNG-----R---GWIGYVVTIAPWFLGTLGMALLPKQRV 514 (585)
Q Consensus 450 ~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (585)
+..++..+ +++ ...+......+++.......+|.... . +....++...++++..+.+..+.|+..
T Consensus 422 ~a~~~q~~~~~~~~~~s~~~~~gs~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~yl~~~i~l~~~i~~~i~~~~~~ 501 (554)
T KOG1286|consen 422 YAMKVQGRSLDELPYKSPTGPYGSYYGLLVNILILLAQFYVAFFPIGSEFSAWGFFEAYLGLPILLIFYIGYKIYAKPTN 501 (554)
T ss_pred ecccccCCCcccccccCCCCCchhHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHHHHHHHHHHHHHHheeecccc
Confidence 87533221 111 11233344444444443333333321 1 122223333333333344444443322
Q ss_pred CCCCcccccchHHHHHHHHHHHHHhcCCHHHHH--HHHHHHHHHHHHHHH-hhccccc
Q 007913 515 PKLWGVPLVPWLPSLSIAMNLFLIGSLGYLAFL--RFIICSAVMLVYYLL-VGLHATY 569 (585)
Q Consensus 515 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~y~~-~~~~~~~ 569 (585)
. ..|+.+.+.+..++.++..++..+|. ....|...++..|+. |+.+|+.
T Consensus 502 ~------~vp~~~~idl~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~ 553 (554)
T KOG1286|consen 502 T------LVPLSPCIDLDTNIYLMDSLDAETWIEERFEVWLEIGLLIYFFWYGIRHSK 553 (554)
T ss_pred c------ccCCccceEEEecceeeccccchhhhhhhHHHHhhhhhHHHHHhhhhhccc
Confidence 1 46777788888888888888888888 899999999999977 7777654
No 19
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=1.7e-51 Score=431.73 Aligned_cols=410 Identities=17% Similarity=0.208 Sum_probs=337.2
Q ss_pred ccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhc
Q 007913 74 PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELG 153 (585)
Q Consensus 74 ~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g 153 (585)
+.+|+++.++++++++++++|+|+|..|+... . +||..+++|+++++.+++.+++++||++++|++||.|.|+++ +|
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a-~-~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g 78 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLA-S-IGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-IS 78 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH-H-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HC
Confidence 34789999999999999999999999999864 4 788899999999999999999999999999999999999999 89
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhH
Q 007913 154 DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (585)
Q Consensus 154 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 233 (585)
|.+||.+||.+|....+...........|+...++.. .+.+ ...+++++++++++++|.+|+|..++
T Consensus 79 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~-~~~~------------~~~~~~~~i~~~~~~ln~~gvk~~~~ 145 (435)
T PRK10435 79 PAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVL-NDPI------------PAGIACIAIVWVFTFVNMLGGTWVSR 145 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-CChH------------HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999998777776677677778887766511 1100 11245667777889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhheecccCC----CCCCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHH
Q 007913 234 LNWISSIVSSCVIVFVIIVGFVHGKTT----NLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLV 309 (585)
Q Consensus 234 ~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~ 309 (585)
++.+..+++++.++.+.+.++.+.+.+ ++.+..+.+..+++.++..++|+|.|+|.+++++||+|||+||+|||+.
T Consensus 146 i~~i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~ 225 (435)
T PRK10435 146 LTTIGLVLVLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATM 225 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHH
Confidence 999999888877766655554443333 2222233456789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccc-cccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCC
Q 007913 310 GSMCMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHM 388 (585)
Q Consensus 310 ~~~~~~~~~y~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~ 388 (585)
.+..++.++|++..+......|.++.+ .++|+.++++..+++++..++.+..+++.+++.++.++..+|..+++||||.
T Consensus 226 ~~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~ 305 (435)
T PRK10435 226 LGTGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGN 305 (435)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999988884 5679999998888899999999889999999999999999999999999999
Q ss_pred CchhhhccCCCCCchHHHHHHHHHHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 007913 389 IPPWFALVHPKTQTPINATLLVTTLSAIIALF------------SSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVT 456 (585)
Q Consensus 389 lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~ 456 (585)
+||+|+|+| |+|+|++|++++++++.++... ..++.+.++.+...++.|++.+++.+++|+ ++.
T Consensus 306 lP~~f~k~n-k~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~~~--~~~- 381 (435)
T PRK10435 306 FPKVYGEVD-KNGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFEG--VNI- 381 (435)
T ss_pred ccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--Cch-
Confidence 999999999 7899999999988776543321 257889999999999999999999885542 111
Q ss_pred CCCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccchHHHHHHHHHHH
Q 007913 457 PKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLF 536 (585)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 536 (585)
|.+..|+.+.++.+.+++
T Consensus 382 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 399 (435)
T PRK10435 382 --------------------------------------------------------------RNFVSLICSVLGCVFCFI 399 (435)
T ss_pred --------------------------------------------------------------hHHHHHHHHHHHHHHHHH
Confidence 111245566666666655
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHhhcccc
Q 007913 537 LIGSLGYLAFLRFIICSAVMLVYYLLVGLHAT 568 (585)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~ 568 (585)
.+. ..+|..+..+++++.+.|+.|+|||.
T Consensus 400 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (435)
T PRK10435 400 ALM---GASSFELAGTFIVSLIILMFYARKMH 428 (435)
T ss_pred HHH---HhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 554 34677888888988888888988763
No 20
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-52 Score=420.34 Aligned_cols=426 Identities=20% Similarity=0.289 Sum_probs=361.5
Q ss_pred cCCccccccChhHHHHHhhcccccccchhccHHhHhhccCh-h-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhH
Q 007913 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGP-A-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFL 148 (585)
Q Consensus 71 ~~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~-~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~ 148 (585)
++.++||+++.++.+.+.+++++|+|+|..|..+... +|+ + ++..|++++++++..++||+||++.+|++||.|.|+
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~-~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi 84 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLAN-TGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYI 84 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHc-CCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhH
Confidence 4566899999999999999999999999999999887 666 4 788899999999999999999999999999999999
Q ss_pred HHHhchhHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhh
Q 007913 149 RVELGDFVAYIAAGNILLEA-VVGAAGLARSWSSY-LASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMS 226 (585)
Q Consensus 149 ~~~~g~~~g~~~g~~~~l~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 226 (585)
.++||+.+||...|..++.. ....|..+..+++| +...++. +..+......++.+++++++++|+.
T Consensus 85 ~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~------------c~~p~~~~~lla~~~l~~lt~~n~~ 152 (479)
T KOG1287|consen 85 SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPL------------CDVPRVASKLLAAALLVLLTLINSF 152 (479)
T ss_pred HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCC------------CCCchHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999776654 45569999999999 5555541 1222223458899999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhheeccc---CCCCCCC-C---CcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcC
Q 007913 227 GTRRSSWLNWISSIVSSCVIVFVIIVGFVHGK---TTNLDPF-L---PYGTEGVFEAAAVVYWSYTGFDMVATMAEETKK 299 (585)
Q Consensus 227 g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~-~---~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~ 299 (585)
++|+..++|.+++..|++.+.++++.++.... .+|+... + ..+...+..++...+|+|.|||.....+||+||
T Consensus 153 ~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEikn 232 (479)
T KOG1287|consen 153 SVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKN 232 (479)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcC
Confidence 99999999999999999999999999887432 3332211 1 122345778888999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 007913 300 PSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFR-QIGMNWAKYLVSVCALKGMTTSLLVGSLGQAR 378 (585)
Q Consensus 300 p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 378 (585)
|+||+|||+..++.+++++|++++++...+++.|++.+++.++..+. ..++.+. +.+.+.+.++++++.|+.+++.||
T Consensus 233 P~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR 311 (479)
T KOG1287|consen 233 PRRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSR 311 (479)
T ss_pred ccccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999988866666655555 5555555 999999999999999999999999
Q ss_pred HHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 007913 379 YTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPK 458 (585)
Q Consensus 379 ~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~ 458 (585)
+++++||+|+||+.|+..|++..||..++++.+..+++..+.++++.+++..++...+.+.+..++.+++|+|+|+.+||
T Consensus 312 ~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rP 391 (479)
T KOG1287|consen 312 LFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRP 391 (479)
T ss_pred HHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 99999999999999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccC
Q 007913 459 NNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQR 513 (585)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (585)
.|.....+.+..++|..+.+..++...... ..+.....+.....|..+.+.+
T Consensus 392 iKvpl~~p~~~~~~~i~lvvip~~~~~~~~---~~ig~~i~l~G~~~Y~~~i~~~ 443 (479)
T KOG1287|consen 392 IKVPLFIPILFLLICIFLVVIPIISDFPVE---TLIGIGIILSGVPFYFLFIHWK 443 (479)
T ss_pred EeeeeehHHHHHHHHHHHhheeeeecCCcc---chhHHHHHHHhhhhheEEEEec
Confidence 887778888889999998888888664332 2333344444445555555333
No 21
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-52 Score=420.45 Aligned_cols=458 Identities=17% Similarity=0.212 Sum_probs=371.7
Q ss_pred CCCchHHHHHhhhhcCCccccccChhHHHHHhhcccc-cccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhh
Q 007913 57 RSTDATELITLQQESKQPLQKCLTWWDLTWLCFGSVV-GSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFA 135 (585)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~l~r~l~~~~~~~i~~~~~i-g~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~ 135 (585)
+++|++++.+++ +|+++||++++|+.+.++++.+- =.|+-..........|+|.++|+|++++++.++++++++|++
T Consensus 30 ~~~d~~~L~~lg--Ykqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~ 107 (550)
T KOG1289|consen 30 DDSDEELLAELG--YKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELC 107 (550)
T ss_pred ccCCHHHHHHcC--CchhhhhhhhHHHHHHHHHHHhcchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344556666666 99999999999999999998651 123333333333332344599999999999999999999999
Q ss_pred hhccCCCchhHhHHH----HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchH
Q 007913 136 VEIPVAGGSFSFLRV----ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDP 211 (585)
Q Consensus 136 s~~P~~Gg~y~~~~~----~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (585)
+++|++||.|.|+.. .+||..+|++||...+++....++...+.++.+..... ..++.+ ..+..+..+
T Consensus 108 Sa~PtsGgLy~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~-l~np~y-------~~~~~~~~~ 179 (550)
T KOG1289|consen 108 SAMPTSGGLYFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVS-LTNPNY-------EPTNYHQFG 179 (550)
T ss_pred hhCCCCCcHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHh-hcCCCC-------cccceEeeh
Confidence 999999999999986 67888999999999999999999999999999998877 444333 233345668
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhheeccc--------------CCCCCCCCCcChhHHHHHH
Q 007913 212 VAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGK--------------TTNLDPFLPYGTEGVFEAA 277 (585)
Q Consensus 212 ~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------------~~~~~~~~~~g~~~~~~~~ 277 (585)
+..++.+...++|+.+.|...+++.+...+.++.+++.++..+...+ .+|.++|.++||. +..++
T Consensus 180 v~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~a-fil~f 258 (550)
T KOG1289|consen 180 VFEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWA-FILGF 258 (550)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHH-HHHhh
Confidence 89999999999999999999999999999999988888777665322 2344456555554 77788
Q ss_pred HHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccc-c--cc--ccHHHHHHHHhCcHH
Q 007913 278 AVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTE-I--DM--NAAYSIAFRQIGMNW 352 (585)
Q Consensus 278 ~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~-~--~~--~~~~~~~~~~~~~~~ 352 (585)
....|.+.|+|+.+|++||+|||+|+.||||+.++.+..++.....+.+....++|. . ++ .+|+.+.+.+..++-
T Consensus 259 ~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k 338 (550)
T KOG1289|consen 259 FNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKK 338 (550)
T ss_pred ccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCC
Confidence 889999999999999999999999999999999999999999999999888887432 1 22 369999998776666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCc--hhhhccCCCCCchHHHHHHHHHHHHHHHHH-----hhHHH
Q 007913 353 AKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIP--PWFALVHPKTQTPINATLLVTTLSAIIALF-----SSLNI 425 (585)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP--~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-----~~~~~ 425 (585)
....+....+++.+.+..+.+.+.||+.|+.||||.|| ++++++||++++|.+|+++..+++.++.++ .+++.
T Consensus 339 ~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~A 418 (550)
T KOG1289|consen 339 GAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNA 418 (550)
T ss_pred ceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 66888888899999999999999999999999999999 999999999999999999999999888777 46888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHH
Q 007913 426 LSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLG 505 (585)
Q Consensus 426 l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (585)
+.+...++..++|....++.+..+|++ -|+.+ |++++.+. +..+++++|.++.++
T Consensus 419 lfs~a~i~l~~Ay~iP~~~rlf~~r~~---f~~gp---------------------~~lGk~s~-p~~~i~v~w~lf~~v 473 (550)
T KOG1289|consen 419 LFSAAAIALFIAYAIPIFCRLFFGRDD---FRPGP---------------------FNLGKFSK-PIGIIAVLWVLFMIV 473 (550)
T ss_pred HHHHHHHHHHHHHHHhHHhheeecccc---cCCCC---------------------cccccccc-chHHHHHHHHHHHHH
Confidence 999999999999999888877666652 22222 67777776 445556999999999
Q ss_pred HhcccccCCCCCCcccccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhcccccchh
Q 007913 506 MALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFIICSAVMLVYYLLVGLHATYDVA 572 (585)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~ 572 (585)
+.++|+.++++. +.++| +.+++++.++..+++|+.++||..+...
T Consensus 474 il~fP~~~pvT~---~~MNy-------------------a~VV~gg~~lf~li~~~~~~~k~f~gP~ 518 (550)
T KOG1289|consen 474 ILCFPSVYPVTA---DNMNY-------------------ACVVYGGVMLFCLIYYFVSARKWFKGPI 518 (550)
T ss_pred HHhCCcccCCCc---ccCce-------------------EEEeehhhhhhhhheeeeecceeecCCc
Confidence 999997666643 33444 5568889999999999888776655443
No 22
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=4.4e-51 Score=436.73 Aligned_cols=377 Identities=21% Similarity=0.323 Sum_probs=309.8
Q ss_pred cCCccccccChhHHHHHhhcccccccchhccHHhHhhccCh-h-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhH
Q 007913 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGP-A-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFL 148 (585)
Q Consensus 71 ~~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~-~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~ 148 (585)
+++++||+++.++.+++++++++|+|+|..++.++.. +|+ + .+++|++++++.++.+++++|+++++|++||.|.|+
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~-~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~ 114 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKN-AGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYI 114 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHHhh-CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhH
Confidence 4567999999999999999999999999999998876 676 3 468899999999999999999999999999999999
Q ss_pred HHHhchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhh
Q 007913 149 RVELGDFVAYIAAGNILLE-AVVGAAGLARSWSSYLAS-MIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMS 226 (585)
Q Consensus 149 ~~~~g~~~g~~~g~~~~l~-~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 226 (585)
++.+||.+||+.+|..++. +....+..+..+++++.. .++....+.| ....++++++++.+.+|++
T Consensus 115 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~------------~~~~i~~~~i~~~~~ln~~ 182 (501)
T TIGR00911 115 LEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEW------------AIRLVAVLCVLLLTLVNCL 182 (501)
T ss_pred HhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchH------------HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999987753 345566666667777543 2321111111 1236778888899999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhheeccc---CCC--CCC-CC--CcChhHHHHHHHHHHHHhhcHhHHhhhhhhhc
Q 007913 227 GTRRSSWLNWISSIVSSCVIVFVIIVGFVHGK---TTN--LDP-FL--PYGTEGVFEAAAVVYWSYTGFDMVATMAEETK 298 (585)
Q Consensus 227 g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~--~~~-~~--~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k 298 (585)
|+|..+++|.+++.++++.++++++.++.... .++ ... +. +.+..++..++..++|+|.|+|.+++++||+|
T Consensus 183 Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~k 262 (501)
T TIGR00911 183 SVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVK 262 (501)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhc
Confidence 99999999999999999988777766654321 111 111 11 12456788889999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHH-HHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007913 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAF-RQIGMNWAKYLVSVCALKGMTTSLLVGSLGQA 377 (585)
Q Consensus 299 ~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 377 (585)
||+|++|||+..++.+++++|++.+++.....|.+++.++++....+ +...+ ....++.+...++.+++.++.+.+.|
T Consensus 263 nP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~i~~~~~is~~~~~~~~~~~~s 341 (501)
T TIGR00911 263 NPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLG-VMSWAMPALVGLSCFGSVNGSLFSSS 341 (501)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888888776544433333 32222 55667788888899999999999999
Q ss_pred HHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 007913 378 RYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTP 457 (585)
Q Consensus 378 R~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~ 457 (585)
|++++|||||.+|++|+|+|+|+++|++|++++++++.+....+++..+.++.+...++.|.+..++.+++|+|+|+.+|
T Consensus 342 R~l~a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p~~~r 421 (501)
T TIGR00911 342 RLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKRPEMNR 421 (501)
T ss_pred HHHHHHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCCCC
Confidence 99999999999999999999999999999999999888777677777788888888899999999999999999888777
Q ss_pred CCch
Q 007913 458 KNNL 461 (585)
Q Consensus 458 ~~~~ 461 (585)
++|.
T Consensus 422 p~r~ 425 (501)
T TIGR00911 422 PIKV 425 (501)
T ss_pred CccC
Confidence 6553
No 23
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=1.1e-50 Score=430.41 Aligned_cols=416 Identities=19% Similarity=0.237 Sum_probs=323.0
Q ss_pred cCCccccccChhHHHHHhhccc-ccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHH
Q 007913 71 SKQPLQKCLTWWDLTWLCFGSV-VGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLR 149 (585)
Q Consensus 71 ~~~~l~r~l~~~~~~~i~~~~~-ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~ 149 (585)
+++++||+++.++.++++++.+ ++.|++..++..... +||..+++|+++++..++++++++||++++|++||.|+|++
T Consensus 7 ~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~-~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~ 85 (475)
T TIGR03428 7 YQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGF-GGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSR 85 (475)
T ss_pred CccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHH
Confidence 7889999999999999999976 789999999999877 99999999999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhccccc--CCCCCcchHHHHHHHHHHHHHHhhh
Q 007913 150 VELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCF--ADGFNLLDPVAVLILLVCNGIAMSG 227 (585)
Q Consensus 150 ~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~g 227 (585)
+.+||.+||++||.+++++....+........++....+.... .. ..++. +...++..+++.+++++.+.+|++|
T Consensus 86 ~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g 162 (475)
T TIGR03428 86 RMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQI--IG-EDPTLTSPSGAANAVLLGSVLLVLTTVINCIG 162 (475)
T ss_pred HHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--cc-cCccccCCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999887776666665555433210000 00 00011 1111123467777888999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhheecccCCC---CC----CCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCC
Q 007913 228 TRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTN---LD----PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKP 300 (585)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~----~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p 300 (585)
+|..+++|++...+++..++++++.++.+.+.++ ++ +..+.....++.+....+|+|.|+|.+++++||+|||
T Consensus 163 ~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP 242 (475)
T TIGR03428 163 VEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNP 242 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCc
Confidence 9999999999999998877776665554332211 11 1112223456677788899999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHhcccccc--cccccHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007913 301 SRDIPIGLVGSMCMITAVYCLMALALTMMVKYTE--IDMNAAYSIAFR-QIGMNWAKYLVSVCALKGMTTSLLVGSLGQA 377 (585)
Q Consensus 301 ~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 377 (585)
+||+|||++.++.++.++|.+..+......++.+ ..++++.+.++. ..+.++.. .+.+..+++.+++.++.+.+.|
T Consensus 243 ~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~-~~~~~~~i~~~~~~~~~~~~~s 321 (475)
T TIGR03428 243 RRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAVLDSPWGT-VLLVDVAIAILVCTLAIQTAGS 321 (475)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHHhCcHhHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888887777665555321 112222333344 34545544 4445667788999999999999
Q ss_pred HHHHHHHhcCCCc--hhhhccCCCCCchHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007913 378 RYTTQIARAHMIP--PWFALVHPKTQTPINATLLVTTLSAIIALF-----SSLNILSSVFSFSTLSIFMLMAIALLVRRY 450 (585)
Q Consensus 378 R~l~~~ardg~lP--~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~ 450 (585)
|++|++||||.+| ++|+|+|||+++|++|+++.++++.++.++ ..|+.+.++.+.+.++.|.+..++.+.+|+
T Consensus 322 R~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~~~~l~~~~ 401 (475)
T TIGR03428 322 RLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVTVPLLLRRL 401 (475)
T ss_pred HHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 489999999999999999999998777665 357899999999999999999988887776
Q ss_pred cc-C---CCCCCCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccC
Q 007913 451 YE-K---DVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQR 513 (585)
Q Consensus 451 ~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (585)
|. + +..++.+ |++++.++ .+++++++|.++..+..++|+..
T Consensus 402 ~~~~~~~~~~~~g~---------------------f~lg~~g~-~vn~~a~~~~~~~~v~~~~P~~~ 446 (475)
T TIGR03428 402 RGWPRGDQTDPAGL---------------------FSLGRWGL-PVNILAVVYGALMVVNLSWPRPE 446 (475)
T ss_pred hccCCccCCCCCCC---------------------CCCchhHH-HHHHHHHHHHHHHHHHHHCCCCC
Confidence 53 1 1112222 77887654 89999999999999999999543
No 24
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=7.4e-51 Score=431.48 Aligned_cols=418 Identities=22% Similarity=0.291 Sum_probs=343.5
Q ss_pred cccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccC-CCchhHhHHHHh
Q 007913 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPV-AGGSFSFLRVEL 152 (585)
Q Consensus 75 l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~-~Gg~y~~~~~~~ 152 (585)
.+|++|.++.+++++++++|+|+|..++..... +||. .+++|+++++++++.+++|+|+++++|+ +||.|+|+++.+
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~-~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~ 83 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASV-AGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGF 83 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHc
Confidence 478999999999999999999999999988765 8886 7899999999999999999999999999 999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhh
Q 007913 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (585)
Q Consensus 153 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 232 (585)
||..||+.||.+++.+.......+....+++...++.... .+.....+.+++++++.+.+|++|+|..+
T Consensus 84 G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~-----------~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~ 152 (473)
T TIGR00905 84 GPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGS-----------GNPVPSILGASVLLWVFTFLVLRGVRQAA 152 (473)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-----------CCcHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 9999999999999988888777777777777776651110 01111235667777889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhheecccCCCCC-CCC-------CcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCCh
Q 007913 233 WLNWISSIVSSCVIVFVIIVGFVHGKTTNLD-PFL-------PYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDI 304 (585)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~-------~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~ 304 (585)
|+|.+++.++++.++++++.++...+.+++. ++. ++++.++..++...+|+|.|+|.+++++||+|| +||+
T Consensus 153 ~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~i 231 (473)
T TIGR00905 153 FINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDV 231 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccc
Confidence 9999999999988877777665433333221 111 123456788888999999999999999999999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccccc-cccH-HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 007913 305 PIGLVGSMCMITAVYCLMALALTMMVKYTEID-MNAA-YSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQ 382 (585)
Q Consensus 305 p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 382 (585)
||++..+..+++++|++...+.....|.+++. .++| ..++.+...+++...++.+..+++.+++.++.+.+.||++|+
T Consensus 232 Prai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~a 311 (473)
T TIGR00905 232 GKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFS 311 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888888764 3567 677777777888888999999999999999999999999999
Q ss_pred HHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 007913 383 IARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF-----SSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTP 457 (585)
Q Consensus 383 ~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~ 457 (585)
|||||.+|++|+|+|| +++|++|++++++++.++.+. ..++.+.++.+.+.++.|.+.+++.+++|+|++. +
T Consensus 312 mardg~lP~~~~~v~~-~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~~~-~- 388 (473)
T TIGR00905 312 AAKDGLFPKIFGRVNK-NGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVGTY-P- 388 (473)
T ss_pred HHhCCChhHHHHhhCc-cCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-c-
Confidence 9999999999999995 599999999999887655443 4689999999999999999999999999887521 1
Q ss_pred CCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccchHHHHHHHHHHHH
Q 007913 458 KNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFL 537 (585)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 537 (585)
+. +.|..++++.++++.++++
T Consensus 389 -------------------------------------------------------~~----~~~~~~~~~~l~~~~~~~~ 409 (473)
T TIGR00905 389 -------------------------------------------------------KI----KNRKALIVGVIACVYSIWL 409 (473)
T ss_pred -------------------------------------------------------cc----ccchHHHHHHHHHHHHHHH
Confidence 00 1123456677777777766
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHhhccc
Q 007913 538 IGSLGYLAFLRFIICSAVMLVYYLLVGLHA 567 (585)
Q Consensus 538 ~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~ 567 (585)
....+........+++++|...|+++.|++
T Consensus 410 ~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 439 (473)
T TIGR00905 410 LYAAGLKYLLLGFILYAPGIIFYGRARKER 439 (473)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666666566667788889988887766544
No 25
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=1.5e-50 Score=431.07 Aligned_cols=360 Identities=18% Similarity=0.232 Sum_probs=301.7
Q ss_pred ccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccC-CCchhHhHHHHhc
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPV-AGGSFSFLRVELG 153 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~-~Gg~y~~~~~~~g 153 (585)
||+++.+|+.+++++.++|+|+|..++..++. +||. .+++|+++++++++++++++||++++|+ .||.|.|+++.+|
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~-~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g 79 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALAT-GGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVD 79 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcC
Confidence 58899999999999999999999999999887 8885 7999999999999999999999999995 5567789999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhH
Q 007913 154 DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (585)
Q Consensus 154 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 233 (585)
|.+||++||.++++++...+......+.++..+.+.. + ......+++++.+++|++|+|..++
T Consensus 80 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~-----~~~~~~~~~~~~~~in~~gv~~~~~ 142 (478)
T TIGR00913 80 PAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKV------------N-----PAVWIAIFYVFIVIINLFGVKGYGE 142 (478)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------------C-----HHHHHHHHHHHHHHHHHhcchHHHH
Confidence 9999999999999999999998888888776543300 0 1133345567788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhheec--ccC-----------CCCCCCCCc----ChhHHHHHHHHHHHHhhcHhHHhhhhhh
Q 007913 234 LNWISSIVSSCVIVFVIIVGFVH--GKT-----------TNLDPFLPY----GTEGVFEAAAVVYWSYTGFDMVATMAEE 296 (585)
Q Consensus 234 ~~~~~~~~~~~~~~~~~i~~~~~--~~~-----------~~~~~~~~~----g~~~~~~~~~~~~~~~~G~e~~~~~~~E 296 (585)
+|.+++.+|+..++.+++.++.. .+. .|..++.+. ++.++..++...+|+|.|+|.+++++||
T Consensus 143 ~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E 222 (478)
T TIGR00913 143 AEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGE 222 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHh
Confidence 99999999987776665544321 110 011123222 2567888999999999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhccccccc---c-------cccHHHHHHHHhCcHHHHHHHHHHHHHHHH
Q 007913 297 TKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEI---D-------MNAAYSIAFRQIGMNWAKYLVSVCALKGMT 366 (585)
Q Consensus 297 ~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (585)
+|||+||+|||++.+..++.++|++..++.....|+++. + .++|+..+.+..+.++...++.+..+++.+
T Consensus 223 ~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~ 302 (478)
T TIGR00913 223 AANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVL 302 (478)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHHHHHH
Confidence 999999999999999999999999998887777776542 1 126877777888888888999999999999
Q ss_pred HHHHHhhhhhhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHH
Q 007913 367 TSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF------SSLNILSSVFSFSTLSIFML 440 (585)
Q Consensus 367 ~~~~~~~~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~ 440 (585)
++.++.+++.||++|+|||||.+|++|+|+| |+++|++|++++++++.+..+. ..++.+.++.+...++.|++
T Consensus 303 ~~~~~~~~~~sR~l~a~ardg~lP~~f~k~~-~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i~y~~ 381 (478)
T TIGR00913 303 SAANSSLYASSRTLYALAHQGLAPKIFAYVD-RRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGFFTWMC 381 (478)
T ss_pred HHHHhhHHHHHHHHHHHHhCCcccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 7899999999999887654332 24788999999999999999
Q ss_pred HHHHHHHHHhccCC
Q 007913 441 MAIALLVRRYYEKD 454 (585)
Q Consensus 441 ~~~~~l~~r~~~~~ 454 (585)
.+++.+++|++.++
T Consensus 382 ~~~~~i~~r~~~~~ 395 (478)
T TIGR00913 382 ICLSHIRFRKAMKA 395 (478)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887543
No 26
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=1e-50 Score=426.53 Aligned_cols=347 Identities=19% Similarity=0.285 Sum_probs=301.3
Q ss_pred HhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHHHHHHHHHH
Q 007913 87 LCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILL 166 (585)
Q Consensus 87 i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l 166 (585)
+++|++||+|+|..++...+. +||..+++|++++++.++.+++++||++++|++||.|.|++|.+||.+||.+||.+++
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~-aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~ 80 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAE-AGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWW 80 (446)
T ss_pred eeecchhHhHHHHHhHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHH
Confidence 578899999999999999887 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 007913 167 EAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVI 246 (585)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~ 246 (585)
.++...+......+.++..+.+ +. ....++.+++++.+.+|++|+|..+++|.+++.+|++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~------------~~-----~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~l 143 (446)
T PRK10197 81 FWVLVIPLEANIAAMILHSWVP------------GI-----PIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAI 143 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhccc------------cC-----cHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHH
Confidence 9998888877666666555432 00 123678888889999999999999999999999999988
Q ss_pred HHHHHhheeccc-------CCCC------CCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHH
Q 007913 247 VFVIIVGFVHGK-------TTNL------DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMC 313 (585)
Q Consensus 247 ~~~~i~~~~~~~-------~~~~------~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~ 313 (585)
+++++.++.... ..++ .++.|+++.++..++...+|+|.|+|.+++++||+|||+||+|||+..+..
T Consensus 144 i~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~ 223 (446)
T PRK10197 144 LAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIW 223 (446)
T ss_pred HHHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHH
Confidence 777666543211 1111 134567778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccccc--ccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCch
Q 007913 314 MITAVYCLMALALTMMVKYTEIDM--NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP 391 (585)
Q Consensus 314 ~~~~~y~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~ 391 (585)
.+.++|++..++.....|+++.+. .+++..+.+..++++...++.+..+++.+++.++.+++.||++|++||||.+|+
T Consensus 224 ~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~ 303 (446)
T PRK10197 224 RISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPA 303 (446)
T ss_pred HHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCH
Confidence 999999999999888888876543 346777788889899999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCchHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007913 392 WFALVHPKTQTPINATLLVTTLSAIIALF------SSLNILSSVFSFSTLSIFMLMAIALLVRRYYE 452 (585)
Q Consensus 392 ~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~ 452 (585)
+|+|+| |+|+|++|++++++++.+..+. ..++.+.++.+...++.|.+.+++.+++|++.
T Consensus 304 ~~~~~~-~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~ 369 (446)
T PRK10197 304 VMGKIN-RSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKIL 369 (446)
T ss_pred HHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 8899999999998877654443 25889999999999999999999999999863
No 27
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=7.9e-50 Score=416.81 Aligned_cols=354 Identities=20% Similarity=0.251 Sum_probs=291.8
Q ss_pred cChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHH
Q 007913 79 LTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAY 158 (585)
Q Consensus 79 l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~ 158 (585)
+|.|+.+++.+++++|+|+|..++...+. +||..+++|++++++.++.+++++|+++++|++||.|.|+++.+||.+||
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~-aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf 79 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALV-AGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGR 79 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHh-cCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHH
Confidence 57899999999999999999999999877 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 007913 159 IAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWIS 238 (585)
Q Consensus 159 ~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 238 (585)
..||.+++.+....+........++...++ .+. + ....++++++++.+.+|++|+|..+++|.+.
T Consensus 80 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~------------~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~ 144 (410)
T PRK11021 80 VTGWLFLSVIPVGLPAALQIAAGFGQALFG-WSS--W------------QLLLAELLTLALLWLLNLRGASSSANLQTVI 144 (410)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcC-CCC--c------------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999987776666555555566665554 111 1 1235667778888999999999999999988
Q ss_pred HHHHHHHHHHHHHhheecccCCCC--CCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHH
Q 007913 239 SIVSSCVIVFVIIVGFVHGKTTNL--DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMIT 316 (585)
Q Consensus 239 ~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~ 316 (585)
..+.+..+..+...+ ..+..++ .+..+.++.++..++...+|+|.|+|.+++++||+|||+||+|||++.+..++.
T Consensus 145 ~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~ 222 (410)
T PRK11021 145 ALLIVALVVAIWWAG--DIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAG 222 (410)
T ss_pred HHHHHHHHHHHHHHc--CCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHH
Confidence 865544433322211 1222222 223445778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccc-ccccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCchhhhc
Q 007913 317 AVYCLMALALTMMVKYTEI-DMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFAL 395 (585)
Q Consensus 317 ~~y~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~~~~~ 395 (585)
++|++.+.+.....+.++. ..++|..++++...+++...++.+..+++.+++.++.+.+.||++|+|||||.+|++|+|
T Consensus 223 ~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k 302 (410)
T PRK11021 223 LVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLAR 302 (410)
T ss_pred HHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHh
Confidence 9999999887666654443 234577777776655666677888888999999999999999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007913 396 VHPKTQTPINATLLVTTLSAIIALF-----SSLNILSSVFSFSTLSIFMLMAIALLVRRYY 451 (585)
Q Consensus 396 ~~~~~~~P~~ai~~~~~i~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~ 451 (585)
+| |+++|+++++++.+++.+..++ .+++.+.+..+...++.|.+.+++.++++++
T Consensus 303 ~~-~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~~ 362 (410)
T PRK11021 303 LS-ARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLKG 362 (410)
T ss_pred hc-cCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99 7799999999998877655433 4688899999999999999999999988754
No 28
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=1.6e-49 Score=423.28 Aligned_cols=443 Identities=17% Similarity=0.201 Sum_probs=338.6
Q ss_pred cCCccccccChhHHHHHhhcccc-cccchhccHHhHhhccCh-hHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhH
Q 007913 71 SKQPLQKCLTWWDLTWLCFGSVV-GSGIFVITGQEAKKHAGP-AIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFL 148 (585)
Q Consensus 71 ~~~~l~r~l~~~~~~~i~~~~~i-g~gi~~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~ 148 (585)
+++++||+++.++.++++++.+. ..|++...+..... +|| ..+++|++++++.++++++++||++++|++||.|+|+
T Consensus 6 ~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~ 84 (482)
T TIGR00907 6 YKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSS-GGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWS 84 (482)
T ss_pred CcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 78889999999999999999652 36787777766655 888 4899999999999999999999999999999999999
Q ss_pred HHHhc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCc-cchhcccccCCCCCcchHHHHHHHHHHHHH
Q 007913 149 RVELG----DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSD-LLRFKVDCFADGFNLLDPVAVLILLVCNGI 223 (585)
Q Consensus 149 ~~~~g----~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 223 (585)
++.+| +..||++||.+++++....+......+.++........+. .+ ..+.+....+.++++++++.+
T Consensus 85 ~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~~~~~~~~i 157 (482)
T TIGR00907 85 AKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREY-------IPTRWHIFGIMIGIHLIHALI 157 (482)
T ss_pred HHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-------cccCchhhhhHHHHHHHHHHH
Confidence 99886 5779999999999999999988888888887655311110 01 111122235667778889999
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHhheecccC----CC--CC-------CCCCcChhHHHHHHHHHHHHhhcHhHH
Q 007913 224 AMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKT----TN--LD-------PFLPYGTEGVFEAAAVVYWSYTGFDMV 290 (585)
Q Consensus 224 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~--~~-------~~~~~g~~~~~~~~~~~~~~~~G~e~~ 290 (585)
|++|.|..++++++..+++++.++++.+..+...+. .+ ++ ++.++++ +++.++....|+|.|+|.+
T Consensus 158 n~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~fsf~G~e~~ 236 (482)
T TIGR00907 158 NSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGF-AFLLGLLNPAWSMTGYDGT 236 (482)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCch-hhhhhhhhhHHHhcCcchh
Confidence 999999999999999988887776555444332111 11 11 1223333 4666777788999999999
Q ss_pred hhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhccc-cccc-cc--ccHHHHHHHH-hCcHHHHHHHHHHHHHHH
Q 007913 291 ATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVK-YTEI-DM--NAAYSIAFRQ-IGMNWAKYLVSVCALKGM 365 (585)
Q Consensus 291 ~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~-~~~~-~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 365 (585)
++++||+|||+||+|||+..++.+..+++++..+......+ .++. ++ ++|+.+++.. .|.++...++.+..+++.
T Consensus 237 ~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~ 316 (482)
T TIGR00907 237 AHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVTS 316 (482)
T ss_pred hHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 99999999999999999999998877766655554433332 2222 21 2588888775 465577777888888999
Q ss_pred HHHHHHhhhhhhHHHHHHHhcCCCc--hhhhccCCCCCchHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHH
Q 007913 366 TTSLLVGSLGQARYTTQIARAHMIP--PWFALVHPKTQTPINATLLVTTLSAIIALF-----SSLNILSSVFSFSTLSIF 438 (585)
Q Consensus 366 ~~~~~~~~~~~sR~l~~~ardg~lP--~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-----~~~~~l~~~~~~~~~~~~ 438 (585)
+++.++.+++.||++++|||||.+| ++|+|+|||+++|++|++++++++.++.+. ..++.+.++.+...++.|
T Consensus 317 ~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~y 396 (482)
T TIGR00907 317 FFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSY 396 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 999999998999999999999988776655 368999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCC
Q 007913 439 MLMAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLW 518 (585)
Q Consensus 439 ~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (585)
.+...+.+++|++ ++.+|+++ .++.+ +..+..+++|.++.++..++|...+..+
T Consensus 397 ~~~~~~~l~~~~~-~~~~~~f~-----------------------lg~~~-~~~~~~~~~~~~~~~v~~~~P~~~p~~~- 450 (482)
T TIGR00907 397 VIPIICKLAKGRN-TIAPGPFW-----------------------LGKYG-FFVNAVAVAWTVFSSVLFSFPPVLPVTP- 450 (482)
T ss_pred HHHHHHHHHhcCC-CCCCCCCc-----------------------CCcch-HHHHHHHHHHHHHHHhheeCCCCCCCCc-
Confidence 9988877655444 34444433 33333 3667778888888888888885332221
Q ss_pred cccccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhccccc
Q 007913 519 GVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFIICSAVMLVYYLLVGLHATY 569 (585)
Q Consensus 519 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~ 569 (585)
. .+|| +.+..++.++++.++|+.++||+.+
T Consensus 451 --~------------------~~ny-~~~~~~~~~~~~~~~~~~~~r~~~~ 480 (482)
T TIGR00907 451 --E------------------NMNY-AVVVFAGVLAISLVYWKYKGRKEFT 480 (482)
T ss_pred --c------------------cCCh-HhHHHHHHHHHHHHHheEeceeecc
Confidence 1 3444 3446688889999999888887655
No 29
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=5.1e-49 Score=438.10 Aligned_cols=426 Identities=15% Similarity=0.187 Sum_probs=341.2
Q ss_pred CccccccChhHHHHHh-hcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhh-ccCCCchhHhHH
Q 007913 73 QPLQKCLTWWDLTWLC-FGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVE-IPVAGGSFSFLR 149 (585)
Q Consensus 73 ~~l~r~l~~~~~~~i~-~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~-~P~~Gg~y~~~~ 149 (585)
++-+|++|+++.+.+. +++++|+|+|..++.++.. +|.. +++.|++++++++++++||+|++++ +|++||.|.|++
T Consensus 72 ~~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~-aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yis 150 (953)
T TIGR00930 72 PAGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQ-AGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLIS 150 (953)
T ss_pred CCCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 3446889999999997 9999999999999999987 7876 8889999999999999999999998 999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhh
Q 007913 150 VELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTR 229 (585)
Q Consensus 150 ~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 229 (585)
|.+|+.+|+..||.+++++.++.+.++.++++++..+++. ..... .....+...+++.+++++++++|++|+|
T Consensus 151 ralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~-~~~~~------~~~~~~~~~iia~i~l~ll~~In~~Gvk 223 (953)
T TIGR00930 151 RSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRE-NGSKI------MVDPINDIRIYGTVTVVVLLGISFAGME 223 (953)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccccc------ccCccccchHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999999999999998761 11000 0011112357888999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhheecccC---------------CCCCCCCCcChhHHHHHHHHHHHHhhcHhHHhhhh
Q 007913 230 RSSWLNWISSIVSSCVIVFVIIVGFVHGKT---------------TNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMA 294 (585)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~ 294 (585)
..+++|.++++++++.++.+++.++..... .|+.+..+.+..++...+...+++|.|+|+.++++
T Consensus 224 ~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~s 303 (953)
T TIGR00930 224 WENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANIS 303 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888777765542111 01111122233347777777888999999999999
Q ss_pred hhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccHH------------------HH----HHHH-hCc
Q 007913 295 EETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAY------------------SI----AFRQ-IGM 350 (585)
Q Consensus 295 ~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-~~~~------------------~~----~~~~-~~~ 350 (585)
||+|||+|++|||++.++.+++++|++.++++....+.+.... ++.. .. .+.. ...
T Consensus 304 gElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~~~~ 383 (953)
T TIGR00930 304 GDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMSLV 383 (953)
T ss_pred HhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHHhhh
Confidence 9999999999999999999999999999988777776543221 1111 00 1110 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCc--hhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHH
Q 007913 351 NWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIP--PWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSS 428 (585)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP--~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~ 428 (585)
.....++.++++++++++.++++++++|++++|||||.+| ++|+|+|+|+++|++|++++++++.++.++++++.+..
T Consensus 384 ~~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l~~ia~ 463 (953)
T TIGR00930 384 SPFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTIAP 463 (953)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 2245788899999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhc
Q 007913 429 VFSFSTLSIFMLMAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMAL 508 (585)
Q Consensus 429 ~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (585)
+.+..++++|++++++++++|++++...||
T Consensus 464 lis~~fLl~Y~lvnla~~~l~~~~~p~~RP-------------------------------------------------- 493 (953)
T TIGR00930 464 IISNFFLASYALINFSCFHASLLRSPGWRP-------------------------------------------------- 493 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCC--------------------------------------------------
Confidence 999999999999999999988765322111
Q ss_pred ccccCCCCCCcccccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhcccc
Q 007913 509 LPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFIICSAVMLVYYLLVGLHAT 568 (585)
Q Consensus 509 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~ 568 (585)
.||. +.+|++++|++.+++++...+ |...++.++++++.|+++.+|+.
T Consensus 494 --------~fk~-~~~~~sllG~l~c~~lmf~i~---w~~ali~~~i~~~ly~~~~~~~~ 541 (953)
T TIGR00930 494 --------RFKY-YHWWLSLLGASLCCAIMFLIS---WWAALVAMVIALFLYKYVTYKKP 541 (953)
T ss_pred --------cccc-chHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhccCC
Confidence 1222 456888888888888877664 44556666777777777665543
No 30
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=1.2e-48 Score=413.99 Aligned_cols=413 Identities=20% Similarity=0.276 Sum_probs=333.6
Q ss_pred cccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCC-CchhHhHHHHhch
Q 007913 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVA-GGSFSFLRVELGD 154 (585)
Q Consensus 77 r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~-Gg~y~~~~~~~g~ 154 (585)
|++|.++++++++++++|+|+|..|+..+.. +||. .+++|+++++.+++.+++++|+++++|++ ||.|.|+++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~-ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAG-AAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHh-hchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc
Confidence 6899999999999999999999999998876 7886 78899999999999999999999999987 5999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHH
Q 007913 155 FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWL 234 (585)
Q Consensus 155 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 234 (585)
..||+.||.+|+++.............++...++.... .+.......+.+++++++.+|++|+|..+++
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~-----------~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i 148 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGG-----------GNNPPSIIGASVLLWCVHFLVLRGVEGAAFI 148 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-----------CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 99999999999998877776666666666655441100 0001112456666778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhheecccCCCCCC---------C-CCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCCh
Q 007913 235 NWISSIVSSCVIVFVIIVGFVHGKTTNLDP---------F-LPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDI 304 (585)
Q Consensus 235 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---------~-~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~ 304 (585)
|.+++.+|++.++++++.++...+.+++.. + ..+.+.++..++...+|+|.|+|.+.+++||.|| +||+
T Consensus 149 ~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~i 227 (468)
T TIGR03810 149 NTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDV 227 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccc
Confidence 999999999888877776654333222211 0 1112345667888899999999999999999998 7999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccH-HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 007913 305 PIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAA-YSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQ 382 (585)
Q Consensus 305 p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 382 (585)
||++..++..+.++|++..+......|+++++. ++| ..++++...++++..++.++++++.+++.++.+.+.+|++|+
T Consensus 228 p~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a 307 (468)
T TIGR03810 228 GKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLL 307 (468)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888888877653 345 667777888899999999999999999999999999999999
Q ss_pred HHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 007913 383 IARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF-----SSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTP 457 (585)
Q Consensus 383 ~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~ 457 (585)
|||||.+|++|+|+| |+|+|++|++++.+++.++.+. ..++.+.++.+...++.|.+.+++.+++|+|+++ ++
T Consensus 308 ~ardg~lP~~f~k~~-~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~-~~ 385 (468)
T TIGR03810 308 MAKDKLMPKYFGKEN-ANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRGGQ-ER 385 (468)
T ss_pred HHhCCCccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cc
Confidence 999999999999999 7899999999998887655443 4589999999999999999999999999877521 10
Q ss_pred CCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccchHHHHHHHHHHHH
Q 007913 458 KNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFL 537 (585)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 537 (585)
. + ++ .++++.++.+.++++
T Consensus 386 ~------------------------------------------------------~---~~----~~~~~~l~~~~~~~~ 404 (468)
T TIGR03810 386 G------------------------------------------------------R---RK----QLLIGLVALLYAVWL 404 (468)
T ss_pred c------------------------------------------------------h---hh----hHHHHHHHHHHHHHH
Confidence 0 0 01 135667777777777
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHhhc
Q 007913 538 IGSLGYLAFLRFIICSAVMLVYYLLVGL 565 (585)
Q Consensus 538 ~~~~~~~~~~~~~~~~~i~~~~y~~~~~ 565 (585)
+...++.......+..++|+..|...+|
T Consensus 405 ~~~~~~~~~~~~~~~~~~g~~~y~~~~~ 432 (468)
T TIGR03810 405 IYAAGLKYLLLSAILYAPGIYFYARARK 432 (468)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776666667777888888865433
No 31
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=1.6e-45 Score=391.05 Aligned_cols=435 Identities=16% Similarity=0.240 Sum_probs=317.5
Q ss_pred cccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHH-HHHHHHHHHhhhhccCCCchhHhHHHHhchh
Q 007913 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSA-LLSAFCYTEFAVEIPVAGGSFSFLRVELGDF 155 (585)
Q Consensus 77 r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~-~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~ 155 (585)
|+++.+++..+.+..+.+ +...+.. +. .|+.+++.|++++++. ++.+++++||++++|++||.|.|+++.+|+.
T Consensus 1 ~~~~~~~l~~~~~~~v~~--~~~~~~~--a~-~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~ 75 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVS--LRGLPAE--AE-YGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGAR 75 (474)
T ss_pred CcccHHHHHHHHHHHHHH--hhcchHH--HH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChh
Confidence 459999999999887765 3323322 34 7888899999999876 5899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHH
Q 007913 156 VAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLN 235 (585)
Q Consensus 156 ~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 235 (585)
+||..||.+|+++.+..+......+..+....+ ... . .+..+.+......+.+++.++.+.+|++|+|..++++
T Consensus 76 ~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~-~~~--~---~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~ 149 (474)
T TIGR03813 76 WGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGP-EAT--V---DESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVA 149 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccc--c---CcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 999999999999877655443333333332221 000 0 0111111111224556666778899999999999999
Q ss_pred HHHHHH-HHHHHHHHHHhheec---ccCC----CCCCCCCc--ChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChh
Q 007913 236 WISSIV-SSCVIVFVIIVGFVH---GKTT----NLDPFLPY--GTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIP 305 (585)
Q Consensus 236 ~~~~~~-~~~~~~~~~i~~~~~---~~~~----~~~~~~~~--g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p 305 (585)
++...+ +++.++++++.++.. .+.. ++.++.|+ ++.++..+ ...+|+|.|+|.++..+||+|||+||+|
T Consensus 150 ~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~af~G~e~~~~~a~E~knP~r~iP 228 (474)
T TIGR03813 150 KWGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLA-ASIFLFYAGMEMNAVHVKDVDNPDKNYP 228 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHH-HHHHHHHhchhHhHHHHHhccCcccchh
Confidence 887544 344444444433321 1111 11122232 22333322 2457899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccccccccH----HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 007913 306 IGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAA----YSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTT 381 (585)
Q Consensus 306 ~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 381 (585)
||+..+..++.++|++..+++....|+++...+++ +.+..+..+.++...++.+..+++.+++.++.+.+.+|+++
T Consensus 229 rAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~~ 308 (474)
T TIGR03813 229 IAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGML 308 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888887654333 34445556777888888888888999999999999999999
Q ss_pred HHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007913 382 QIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF--------SSLNILSSVFSFSTLSIFMLMAIALLVRRYYEK 453 (585)
Q Consensus 382 ~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~ 453 (585)
++||||.+|++|+|+| |+++|+++++++++++.++.++ ..++.+.++.+...++.|++.+++.+++|+|+|
T Consensus 309 a~ardg~lP~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~~~~ 387 (474)
T TIGR03813 309 AVAKAGYLPTFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYSQP 387 (474)
T ss_pred HHhhcCCCCHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999 8899999999999876543332 236788888898899999999999999998888
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccchHHHHHHHH
Q 007913 454 DVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAM 533 (585)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 533 (585)
+.+|++|. ..++.+.+..+..++++.++.++..++|....... .
T Consensus 388 ~~~rpf~~---------------------p~g~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~---~------------ 431 (474)
T TIGR03813 388 DRPRPYRI---------------------PGGLAGMWFIGGLGFVGSALAFVLSFIPPSQIGTG---S------------ 431 (474)
T ss_pred CCCCCeEe---------------------cCCccchhHHHHHHHHHHHHHHheeEeCCcccCCC---c------------
Confidence 87776541 12334445788889999999988888885432221 1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhccc
Q 007913 534 NLFLIGSLGYLAFLRFIICSAVMLVYYLLVGLHA 567 (585)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~ 567 (585)
++|| +.+.+++.+++..++|+.++|||
T Consensus 432 ------~~ny-~~~~~~~~~~~~~~~~~~~~~~~ 458 (474)
T TIGR03813 432 ------PTRY-VGLLIGLAALFVTAPFLIYARRK 458 (474)
T ss_pred ------hHHH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 2334 44466677777888888877655
No 32
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=2e-44 Score=383.00 Aligned_cols=400 Identities=16% Similarity=0.204 Sum_probs=293.3
Q ss_pred ccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHH-HHHHHHHHHHhhhhcc-CCCchhHhHHHHhc
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLS-ALLSAFCYTEFAVEIP-VAGGSFSFLRVELG 153 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~-~~~~a~~~~el~s~~P-~~Gg~y~~~~~~~g 153 (585)
+|+++.++++++.++.+.+ ++..+. .+. .|...+..+++++++ .++.+++++||++++| ++||.|.|+++.+|
T Consensus 3 ~~~l~~~~~~~~~~~~v~~--~~~~~~--~a~-~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G 77 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVLA--VYEYPT--FAT-SGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLG 77 (507)
T ss_pred CcEeeHHHHHHHHHHHHHH--HHhhHH--HHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccC
Confidence 5779999999999988853 454443 223 677777777887776 6889999999999997 99999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhH
Q 007913 154 DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (585)
Q Consensus 154 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 233 (585)
+.+||+++|.+|+...+..+.........+..... .+ +.+.+.....+..++++++++++|++|.|..++
T Consensus 78 ~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~-~~---------~~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~ 147 (507)
T TIGR00910 78 ERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK-FP---------ALNEDPIIKFIAALIIFWALAFSQFGGTKRTAK 147 (507)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cc---------hhccCcHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999998876554443322332333222 10 111111112345566778899999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHhheec---ccC----CCCCCCCCcC-hhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCCh
Q 007913 234 LNWISSIVSSCV-IVFVIIVGFVH---GKT----TNLDPFLPYG-TEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDI 304 (585)
Q Consensus 234 ~~~~~~~~~~~~-~~~~~i~~~~~---~~~----~~~~~~~~~g-~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~ 304 (585)
++++.....++. ++++++.+... .++ .+..++.|+. ..+.+..+...+|+|.|+|.+++++||+|||+||+
T Consensus 148 i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~ 227 (507)
T TIGR00910 148 IAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDY 227 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccc
Confidence 998876544433 33333322221 111 1112333331 12344455556899999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHH----HHHHhC--cHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 007913 305 PIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSI----AFRQIG--MNWAKYLVSVCALKGMTTSLLVGSLGQAR 378 (585)
Q Consensus 305 p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 378 (585)
|||++.+++++.++|.+..+++....|+++...+++..+ .....+ .++...++.+..+++.+++.++++++.||
T Consensus 228 PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~sR 307 (507)
T TIGR00910 228 PLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSR 307 (507)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888877888887764443333 333333 25677788888899999999999999999
Q ss_pred HHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007913 379 YTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF---------SSLNILSSVFSFSTLSIFMLMAIALLVRR 449 (585)
Q Consensus 379 ~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~---------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r 449 (585)
+++++||||.+|++|+|+| |+++|+++++++++++.++.+. ..++.+.++.+...++.|++..++.+++|
T Consensus 308 ~l~~~ardg~lP~~~~k~n-k~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~a~i~lr 386 (507)
T TIGR00910 308 GMFAAAQKGLLPAAFAKMN-KHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFVLI 386 (507)
T ss_pred HHHHhcccCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 8899999999999988765432 13566677788899999999999999999
Q ss_pred hccCCCCCCCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhccccc
Q 007913 450 YYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQ 512 (585)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (585)
+|+|+.+|++|. ..++.+.+.++...+++.++.++..++|..
T Consensus 387 ~k~p~~~rpf~~---------------------pg~~~~~~i~~~~~~~~~~~~~v~~~~Pp~ 428 (507)
T TIGR00910 387 LKHPDLKRTFNI---------------------PGGIGGKLIIAGIGFLLSIFAFFISFLPPA 428 (507)
T ss_pred HhcCCCCCCeEe---------------------cCCccchhhHHHHHHHHHHHHHheeeeCCC
Confidence 999888877652 111223346677777777777777778743
No 33
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=4.5e-44 Score=376.78 Aligned_cols=361 Identities=28% Similarity=0.495 Sum_probs=310.5
Q ss_pred cChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHH-HHHHHHHHHhhhhccCCCchhHhHHHHhchhHH
Q 007913 79 LTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSA-LLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVA 157 (585)
Q Consensus 79 l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~-~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g 157 (585)
+|+++.++++++.++|+|++..+ .... +|+..+++|++++++. ++.+++|+|+++++|++||.|.|+++.+||.+|
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~--~~~~-~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP--AAAS-AGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH--HHTC-TGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccch
Confidence 58899999999999999998876 3334 8888888999999888 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 007913 158 YIAAGNILLEAVVGAAGLARSWSSYLASMIDS-NNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNW 236 (585)
Q Consensus 158 ~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~ 236 (585)
++.+|.+++.+....+.......+++...++. ..++.| ....++++++++.+.+|++|.|..++++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~l~~~g~~~~~~~~~ 145 (426)
T PF13520_consen 78 FIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPW------------PQFLIAIILILLFTLLNLLGIKLSGKIQN 145 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHH------------HHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred hcccceeEEEeeccccccccchhhhhhhccccccccccc------------hheeeeecccccceEeeechhhhhhhhhh
Confidence 99999999999999998888889988877651 111111 23477888999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHhheecccCCC-------CCCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHH
Q 007913 237 ISSIVSS-CVIVFVIIVGFVHGKTTN-------LDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGL 308 (585)
Q Consensus 237 ~~~~~~~-~~~~~~~i~~~~~~~~~~-------~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai 308 (585)
+++.+++ ..++++++.++...+.+. ...+.|+++.+++.++...+|+|.|+|.+++++||.|| ||+||++
T Consensus 146 ~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai 223 (426)
T PF13520_consen 146 ILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAI 223 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHH
T ss_pred hhhhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc--hhheeec
Confidence 9999999 576666666665443221 22456667777899999999999999999999999877 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccc----HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 007913 309 VGSMCMITAVYCLMALALTMMVKYTEIDMNA----AYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIA 384 (585)
Q Consensus 309 ~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 384 (585)
..+.+++.++|++..++.....|+++.+.++ +....++..++++...++.+..+++.+++.++.+.+.+|++++||
T Consensus 224 ~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a 303 (426)
T PF13520_consen 224 IISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMA 303 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhcccccc
Confidence 9999999999999999999999988765432 466777777778999999999999999999999999999999999
Q ss_pred hcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 007913 385 RAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF------SSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTP 457 (585)
Q Consensus 385 rdg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~ 457 (585)
|||.+|++|+|+| |+++|++++++.++++.++.+. .+++.+.+..+....+.|.+..++.+++|+|+|+.+|
T Consensus 304 ~d~~lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 381 (426)
T PF13520_consen 304 RDGVLPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRPDLKR 381 (426)
T ss_dssp HTTSSSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSCSSGH
T ss_pred cccchhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCC
Confidence 9999999999999 9999999999999999666532 2678999999999999999999999999999887644
No 34
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-42 Score=370.17 Aligned_cols=379 Identities=31% Similarity=0.489 Sum_probs=324.6
Q ss_pred cCCccccccChhH-HHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHH
Q 007913 71 SKQPLQKCLTWWD-LTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLR 149 (585)
Q Consensus 71 ~~~~l~r~l~~~~-~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~ 149 (585)
++++++|+++.++ ...+..+.++|.|++..++..... + +...++|++++++..+.+++++|+++.+|++||.|.|++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~-~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~ 83 (466)
T COG0531 6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGL-A-PAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAK 83 (466)
T ss_pred cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHh-c-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehh
Confidence 4566789999999 889999999999999999988765 4 555555999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhh
Q 007913 150 VELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTR 229 (585)
Q Consensus 150 ~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 229 (585)
+.+||..|+.++|.+++++....+........++...++. .. . ...+......++.+++++.+++|++|.|
T Consensus 84 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~-------~~~~~~~~~~~~~~~~~~~~~ln~~G~~ 154 (466)
T COG0531 84 RALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPG-PG-L-------LSIGPLLIILIALALIALLTLLNLRGIK 154 (466)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-ch-h-------hcCCchHHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999999999988887762 11 0 0011023357888999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhheecccCCCCCCCC---C--cChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCCh
Q 007913 230 RSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFL---P--YGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDI 304 (585)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~--~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~ 304 (585)
..++++.+...++++.++++.+.++.+.+..+.+.+. + ....++..++...+|+|.|+|.+++++||+|||+|++
T Consensus 155 ~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~i 234 (466)
T COG0531 155 ASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTI 234 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccc
Confidence 9999999999999999999888877766554322211 1 2234588888899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccccccc---cHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 007913 305 PIGLVGSMCMITAVYCLMALALTMMVKYTEIDMN---AAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTT 381 (585)
Q Consensus 305 p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 381 (585)
||+++.+++.+.++|++.+++.....+.+++... .|..+......+.+...++.+..+.+.+++.+++..+.+|.++
T Consensus 235 p~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~ 314 (466)
T COG0531 235 PRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLY 314 (466)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998887655433 6888888877778999999999999999999999999999999
Q ss_pred HHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 007913 382 QIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF-S----SLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVT 456 (585)
Q Consensus 382 ~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-~----~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~ 456 (585)
+|||||.+|++|+|+|+|+++|+++++++++++..+... . .++.+.++.+...++.|.+.+++.+++|+|+++.+
T Consensus 315 ~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 394 (466)
T COG0531 315 AMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLK 394 (466)
T ss_pred HHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 999999999999999999999999999999999833333 2 36899999999999999999999999999876655
Q ss_pred CCCc
Q 007913 457 PKNN 460 (585)
Q Consensus 457 ~~~~ 460 (585)
|+.+
T Consensus 395 ~~~~ 398 (466)
T COG0531 395 RPFR 398 (466)
T ss_pred Cccc
Confidence 5443
No 35
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=1.3e-41 Score=362.55 Aligned_cols=377 Identities=16% Similarity=0.253 Sum_probs=270.5
Q ss_pred ccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHH-HHHHHHHHHHhhhhccC-CCchhHhHHHH
Q 007913 74 PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLS-ALLSAFCYTEFAVEIPV-AGGSFSFLRVE 151 (585)
Q Consensus 74 ~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~-~~~~a~~~~el~s~~P~-~Gg~y~~~~~~ 151 (585)
++||++|++++..++++.++|.+. .+ ..... +|+..++.+++++++ .++.+++++||++++|+ +||.|+|+++.
T Consensus 4 ~~~~~l~~~~l~~~~~~~vig~~~--~~-~~~~~-~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~ 79 (496)
T PRK15238 4 NTKKKLSLIGLILMIFTSVFGFAN--SP-RAFYL-MGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKS 79 (496)
T ss_pred cccCeeeHHHHHHHHHHHHHhCCc--hH-HHHHH-cChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 347889999999999999998653 23 22334 788877777777755 67899999999999997 89999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhh
Q 007913 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSS-YLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (585)
Q Consensus 152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (585)
+||.+||+.+|.++.+++...+........ .....++......|+.. +.. .......++++++++++++|.+|+|.
T Consensus 80 ~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~a~~~~~~~t~vn~~g~~~ 156 (496)
T PRK15238 80 VGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFL--GLN-STQVVGILAVIWMILVTFVASKGINK 156 (496)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhh--ccc-chHHHHHHHHHHHHHHHHHHccchHH
Confidence 999999999999888777654433222111 11111221111112110 000 11111245566666899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHH----hheecc-cCC---CCCCCC----Cc--ChhHHHHHHHHHHHHhhcHhHHhhhhhh
Q 007913 231 SSWLNWISSIVSSCVIVFVII----VGFVHG-KTT---NLDPFL----PY--GTEGVFEAAAVVYWSYTGFDMVATMAEE 296 (585)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i----~~~~~~-~~~---~~~~~~----~~--g~~~~~~~~~~~~~~~~G~e~~~~~~~E 296 (585)
.++++++.+.+++...+++++ ..+... +.+ +...+. +. +..+++.++..+.|+|.|+|..++++||
T Consensus 157 ~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E 236 (496)
T PRK15238 157 IAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDK 236 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 999999887776543221111 111111 111 111111 11 1135777788899999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccc-------cHHHHHHHHh-----------------CcHH
Q 007913 297 TKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMN-------AAYSIAFRQI-----------------GMNW 352 (585)
Q Consensus 297 ~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-----------------~~~~ 352 (585)
+|||+|++|||+..+..++.++|++..+.+....|+++...+ .|+. +.+.. .+++
T Consensus 237 ~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~g~~~~~~~~~g~~ 315 (496)
T PRK15238 237 TENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYV-LMNNLGYTLGHALGLSPAASLTLGVW 315 (496)
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHH-HHHHHHHHHHHHhccchhhhhhhhHH
Confidence 999999999999999999999999998887777776655321 1221 11211 1245
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH---h------hH
Q 007913 353 AKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF---S------SL 423 (585)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~---~------~~ 423 (585)
+..++.+..+.+.+++.++..++.+|.++.++|||.+||+|+|+| |+|+|++|++++++++.++... . .|
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~n-k~g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f 394 (496)
T PRK15238 316 FARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLN-KNGMPANAMWLQCIIVSVFILLVSFGGDAASAFF 394 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHhCchhHHHHH
Confidence 555777888899999999999999999999999999999999999 8999999999999877655433 1 17
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCc
Q 007913 424 NILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPKNN 460 (585)
Q Consensus 424 ~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~ 460 (585)
+.+.++.+...++.|++.+++++++|| +|+.+|+++
T Consensus 395 ~~l~~l~~~~~li~y~~~~~a~i~~r~-~~~~~r~~~ 430 (496)
T PRK15238 395 NILTLMANVSMTLPYLFLAGAFPFFKK-KKDIDRPFV 430 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCce
Confidence 889999999999999999999999876 466666654
No 36
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=2.7e-45 Score=390.33 Aligned_cols=361 Identities=25% Similarity=0.412 Sum_probs=305.2
Q ss_pred HHHHhhcccccccchhccHHhHhhccCh-hHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHHHHHH
Q 007913 84 LTWLCFGSVVGSGIFVITGQEAKKHAGP-AIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAG 162 (585)
Q Consensus 84 ~~~i~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~ 162 (585)
+.++++++++|+|+|...+..... +|| +.++++++++++.++++.+++|+++++|++||.|.|++|.+||..|+.+||
T Consensus 2 v~~~~ig~~ig~g~f~~~g~~~~~-~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 2 VFMISIGGIIGTGLFLGSGFAIAA-AGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred EEEeeHHHHHHHHHHHHHHHHHHh-cccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeH
Confidence 345678899999999999998887 888 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 007913 163 NILLEAVVGAAGLARSWSSYLASM--IDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSI 240 (585)
Q Consensus 163 ~~~l~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~ 240 (585)
.+++.++...+......+.++..+ ++ ..+..|. ....++.++.++++.+|++|+|..++++.++..
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~ 148 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFWGYFP-GLPSTWV-----------WGILIAIIFILLITLLNLFGVRVSGKIEFILTI 148 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccccccc-ccccccc-----------ccchhhhhhhhhhhhhhhhhhhccchHHHHHHH
Confidence 999999999999888877777665 33 1111111 111457788888999999999999999999999
Q ss_pred HHHHHHHHHHHhh-ee-ccc--CCCC---------CCCCCcC--------hhHHHHHHHHHHHHhhcHhHHhhhhhhhcC
Q 007913 241 VSSCVIVFVIIVG-FV-HGK--TTNL---------DPFLPYG--------TEGVFEAAAVVYWSYTGFDMVATMAEETKK 299 (585)
Q Consensus 241 ~~~~~~~~~~i~~-~~-~~~--~~~~---------~~~~~~g--------~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~ 299 (585)
++++.++.+++.+ +. ..+ ..+. .+..+++ +.+++.++..++++|.|+|+++.++||+||
T Consensus 149 i~~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~ 228 (478)
T PF00324_consen 149 IKLIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKN 228 (478)
T ss_pred HhhhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCC
Confidence 9999998888877 22 111 1111 1123334 678999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccc------cHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhh
Q 007913 300 PSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMN------AAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGS 373 (585)
Q Consensus 300 p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (585)
|+|++|||+..+++.++++|++..++.....|+++.... +|+.++.+..++++...++.++.+.+.+++.++.+
T Consensus 229 P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~ 308 (478)
T PF00324_consen 229 PRKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASL 308 (478)
T ss_pred chhhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhh
Confidence 999999999999999999999999999988888875321 48889999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007913 374 LGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF------SSLNILSSVFSFSTLSIFMLMAIALLV 447 (585)
Q Consensus 374 ~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~l~ 447 (585)
++.||++++|||||.+|+++.+.|+|+|+|++|++++.+++.+..+. ..++.+.++.+...+..|.+.+++.++
T Consensus 309 ~~~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~ 388 (478)
T PF00324_consen 309 YAASRLLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYILINISYIR 388 (478)
T ss_pred cccceeehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHHhhhhhhhh
Confidence 99999999999999999666666779999999999999988766654 235677888889999999999999998
Q ss_pred HHhccCCCCC
Q 007913 448 RRYYEKDVTP 457 (585)
Q Consensus 448 ~r~~~~~~~~ 457 (585)
+|++.+..++
T Consensus 389 ~r~~~~~~~~ 398 (478)
T PF00324_consen 389 FRKKFKYRGR 398 (478)
T ss_pred hhhhhccccc
Confidence 8887544433
No 37
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-31 Score=267.97 Aligned_cols=426 Identities=16% Similarity=0.201 Sum_probs=333.3
Q ss_pred ccccChhHHHHH-hhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhcc-CCCchhHhHHHHh
Q 007913 76 QKCLTWWDLTWL-CFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIP-VAGGSFSFLRVEL 152 (585)
Q Consensus 76 ~r~l~~~~~~~i-~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P-~~Gg~y~~~~~~~ 152 (585)
+-++|..-.+.+ ++.++.|.-.|....+++.. +|.. .++..++++.+.++++.+++.++++-- .+||.|..++|.+
T Consensus 111 a~~mGt~mGVyLPclQnIlGVilFiRLtWvVG~-AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsL 189 (1075)
T KOG2082|consen 111 AARMGTLMGVYLPCLQNILGVILFIRLTWVVGM-AGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSL 189 (1075)
T ss_pred ccccceeeeeeHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEeccc
Confidence 344666554444 77888899999999999877 8876 777788999999999999999999776 6899999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccCCccch--hcccccCCCCCcchHHHHHHHHHHHHHHhhhhh
Q 007913 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMI-DSNNSDLLR--FKVDCFADGFNLLDPVAVLILLVCNGIAMSGTR 229 (585)
Q Consensus 153 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 229 (585)
||.+|-.+|.+++++..++.+.+.++..+.+..++ +.. ..+. ....+.....+...+.+.+++++.+++...|+|
T Consensus 190 GPEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~a--aIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK 267 (1075)
T KOG2082|consen 190 GPEFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAA--AIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVK 267 (1075)
T ss_pred CccccceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHh--hhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887744 310 0000 000123334555678999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhheecc-c-----------------------------CCC------------------
Q 007913 230 RSSWLNWISSIVSSCVIVFVIIVGFVHG-K-----------------------------TTN------------------ 261 (585)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~-----------------------------~~~------------------ 261 (585)
...++..++..+.++.++.+.+.++-.. + ..|
T Consensus 268 ~Vnk~A~vfL~CVILSIlaiyaG~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~~ 347 (1075)
T KOG2082|consen 268 FVNKFAPVFLACVILSILAIYAGGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSAT 347 (1075)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCcc
Confidence 9999999999999988887776654310 0 001
Q ss_pred ---------CC---------------CCCC----------cC-------------------hhHHHHHHHHHHHHhhcHh
Q 007913 262 ---------LD---------------PFLP----------YG-------------------TEGVFEAAAVVYWSYTGFD 288 (585)
Q Consensus 262 ---------~~---------------~~~~----------~g-------------------~~~~~~~~~~~~~~~~G~e 288 (585)
.+ +++| .| -..+..-+.+.|.+.+|.-
T Consensus 348 c~~y~~~nnvt~i~GipG~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGIm 427 (1075)
T KOG2082|consen 348 CDEYFSKNNVTEIQGIPGLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGIM 427 (1075)
T ss_pred cccccccccceeecCCcchhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccceee
Confidence 00 0000 00 0113333455567889999
Q ss_pred HHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHH------HhCcHHHHHHHHHHHH
Q 007913 289 MVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFR------QIGMNWAKYLVSVCAL 362 (585)
Q Consensus 289 ~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 362 (585)
+.++.+++.|||+|++|.+.+.+.+.+..+|+...+.+..+...-.+.+.. -+... ...+ .-.+++.++.+
T Consensus 428 aGSNrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKf--G~sv~g~lVva~laW-PsPwVi~IGsF 504 (1075)
T KOG2082|consen 428 AGSNRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKF--GQSVGGNLVVATLAW-PSPWVIVIGSF 504 (1075)
T ss_pred ecCCCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhh--hhhccCcEEEEEecC-CCceeeehhHH
Confidence 999999999999999999999999999999999988887766532222110 00000 0011 13467788999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHhcCCCc--hhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 007913 363 KGMTTSLLVGSLGQARYTTQIARAHMIP--PWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFML 440 (585)
Q Consensus 363 ~~~~~~~~~~~~~~sR~l~~~ardg~lP--~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~ 440 (585)
+|++++.+.++.+++|++++.|||+.+| +.|+|.. ++|.|.+|++++.+++...+++++.+.+..+.++.++.+|.+
T Consensus 505 lST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~-~ngEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~f 583 (1075)
T KOG2082|consen 505 LSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGK-ANGEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLF 583 (1075)
T ss_pred HHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhcccc-CCCCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 9999987 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-ccCCCCCCCchhHH-HHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCC
Q 007913 441 MAIALLVRRY-YEKDVTPKNNLVKF-LVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLW 518 (585)
Q Consensus 441 ~~~~~l~~r~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (585)
+++++.+.-. +-|.+++++|.+.| +++++..+|.++++..-| .+..+...+..++|.+..++.....|
T Consensus 584 VNLaCavqtLLrtPnWRPRfkyyHW~LSflG~sLC~~iMF~~SW----------yyAlvAm~~a~~IYKYiEykGAeKEW 653 (1075)
T KOG2082|consen 584 VNLACAVQTLLRTPNWRPRFKYYHWSLSFLGASLCLAIMFISSW----------YYALVAMLIAGVIYKYIEYKGAEKEW 653 (1075)
T ss_pred HhHHHHHHHHhcCCCCCccchhhhhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhccccchh
Confidence 9998876554 56888888888888 899999999999999988 56666777788888887765554443
No 38
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.97 E-value=5.1e-29 Score=257.84 Aligned_cols=339 Identities=14% Similarity=0.102 Sum_probs=268.3
Q ss_pred HHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHHHHHHHHH
Q 007913 86 WLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNIL 165 (585)
Q Consensus 86 ~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~ 165 (585)
++.+++++|+|++..|+..... +++.+++..+++++.+...+++++|+++++|++||.|.|.++.+||..|++.+|.++
T Consensus 4 ~lv~gt~IGaGIl~lP~~~a~~-g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 4 LIIAGTTIGAGMLALPTSTAGA-WFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred EEeehhhHhHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 4567889999999999987654 555667778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 007913 166 LEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCV 245 (585)
Q Consensus 166 l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~ 245 (585)
+......+++....++++...++...... . ......+++.+++..++++|.|..+|+|.+++..++..
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~~~~~~-------~-----~~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~ 150 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGEYFGFP-------W-----SARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIA 150 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHhcCCC-------c-----cHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 98888888888888888877765111100 0 12356677777888999999999999999999999999
Q ss_pred HHHHHHhheecccCCCCCCCC--CcChhHHHHHHHHHHHHhhcHh-HHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHH
Q 007913 246 IVFVIIVGFVHGKTTNLDPFL--PYGTEGVFEAAAVVYWSYTGFD-MVATMAEETKKPSRDIPIGLVGSMCMITAVYCLM 322 (585)
Q Consensus 246 ~~~~~i~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~G~e-~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~ 322 (585)
++++++.++.+.+.+|+.+.. +.++.++..++...+++| |+| ..+.+.+|+|+++|++||+++.+..++.++|++.
T Consensus 151 l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~ 229 (381)
T TIGR00837 151 FALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILW 229 (381)
T ss_pred HHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777776666654432 235667788888888888 564 6888899998779999999999999999999999
Q ss_pred HHHHHhccccccccc-------ccHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCchhhh
Q 007913 323 ALALTMMVKYTEIDM-------NAAYSIAFRQ-IGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFA 394 (585)
Q Consensus 323 ~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~~~~ 394 (585)
.....+..|.+++.+ .+++.++.+. .++++...++.++..++..++.++...+.++. +++.++
T Consensus 230 ~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~---------l~~~~~ 300 (381)
T TIGR00837 230 QLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDY---------LADLFK 300 (381)
T ss_pred HHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhC
Confidence 999999999887641 2466666664 57778889999999999999999988777744 444455
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007913 395 LVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIALLVR 448 (585)
Q Consensus 395 ~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 448 (585)
+.|++++ |..+.+++.+...+++.+.+-..+..+...+....+....+..+..
T Consensus 301 ~~~~~~~-~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G~~~~~~~~~~p~l~~ 353 (381)
T TIGR00837 301 FDDSKKG-RFKTGLLTFLPPLVFALFYPEGFLYAIGYAGLAATIWAVIIPALLA 353 (381)
T ss_pred CCcccCC-CchhhhhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444434 6778888888888888776666667777777666666666665544
No 39
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.95 E-value=3.3e-27 Score=238.66 Aligned_cols=395 Identities=17% Similarity=0.180 Sum_probs=307.2
Q ss_pred ccChhHHHHHhhc-ccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhcc-CCCchhHhHHHHhch
Q 007913 78 CLTWWDLTWLCFG-SVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIP-VAGGSFSFLRVELGD 154 (585)
Q Consensus 78 ~l~~~~~~~i~~~-~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P-~~Gg~y~~~~~~~g~ 154 (585)
++|+++.++.-.. ++...=+|...|.++.+ +|.. .++-++++-.+.+++.++.+.++++-- +.||.|+.++|.+||
T Consensus 66 kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~-aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGp 144 (945)
T KOG1288|consen 66 KLGTFEGVFVPTALSMFSILLFLRFGFIVGQ-AGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGP 144 (945)
T ss_pred cccceeeEechhHHHHHHHHHHHHHhhhhcc-hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCc
Confidence 7888776654322 33444578899999877 8875 677778888888999999999999877 788999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHH
Q 007913 155 FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWL 234 (585)
Q Consensus 155 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 234 (585)
.+|.-.|..+++++++.++.++.++.+-+.+.++ .....- -....+|..+++..+.+..++.++..+++.|....+|.
T Consensus 145 EfGGSIGllFf~anV~~~am~isG~vE~il~nfG-~~a~g~-sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGsalfAka 222 (945)
T KOG1288|consen 145 EFGGSIGLLFFVANVFNCAMNISGFVEPILDNFG-KEAQGA-SGSQFLPDGYWWRFLYTTLVLALCLIVCLLGSALFAKA 222 (945)
T ss_pred ccCCeeeehhhHHHHhcchhhhhhhhHHHHHhcC-ccccCC-cccccCCCCcchhhHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 9999999999999999999999999999999887 222110 11124678888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhheecccCCCC------------------CCCC-----------------CcChhHHHHHHHH
Q 007913 235 NWISSIVSSCVIVFVIIVGFVHGKTTNL------------------DPFL-----------------PYGTEGVFEAAAV 279 (585)
Q Consensus 235 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~------------------~~~~-----------------~~g~~~~~~~~~~ 279 (585)
.++..+...+.+....+..+..++..+. +++. ..+...+-..+..
T Consensus 223 s~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV 302 (945)
T KOG1288|consen 223 SNILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGV 302 (945)
T ss_pred hhhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhhee
Confidence 9888776666665555554443322211 1110 0111235555666
Q ss_pred HHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhCcHHHHHHHHH
Q 007913 280 VYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSV 359 (585)
Q Consensus 280 ~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (585)
.+-+-+|.-+.++|++|.|+|.|.+||+.+.++..+++.|++..+......|...+.++-.+ +... ..-..++.+
T Consensus 303 ~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v---~~~i--sl~p~fi~i 377 (945)
T KOG1288|consen 303 FFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYDV---MMHI--SLHPPFILI 377 (945)
T ss_pred eeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchhh---eeec--cccchHHHH
Confidence 67788999999999999999999999999999999999999999999888887766554322 2211 112345667
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHhcCCCc--hhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 007913 360 CALKGMTTSLLVGSLGQARYTTQIARAHMIP--PWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSI 437 (585)
Q Consensus 360 ~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP--~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~ 437 (585)
+.+.+.+.+.++.+.++||++.++|||+.+| -.|+|...+.+.|+.|+.++.+++-+..+.+++|.+.++.++.++++
T Consensus 378 Gi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~~FLlt 457 (945)
T KOG1288|consen 378 GILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITMTFLLT 457 (945)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 7777888888899999999999999999999 67888888899999999999999998888899999999999999999
Q ss_pred HHHHHHHHHHHHhcc-CCCCCCCchhHH-HHHHHHHHHHHhHHhh
Q 007913 438 FMLMAIALLVRRYYE-KDVTPKNNLVKF-LVCLTVVVASSIGITA 480 (585)
Q Consensus 438 ~~~~~~~~l~~r~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 480 (585)
|..++++++.++... |+-++.++...| .+.++.+.+..++++.
T Consensus 458 y~~vNLacl~LeissAPNFRPtFkyF~w~TclvG~l~s~~mMfvV 502 (945)
T KOG1288|consen 458 YGAVNLACLLLEISSAPNFRPTFKYFNWHTCLVGVLLSLGMMFVV 502 (945)
T ss_pred HHHHHHHHHHhhhccCCCCCchhhhhhHHHHHHHHHHHHhhhhee
Confidence 999999999998865 554555665555 4555555555554443
No 40
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.93 E-value=1.5e-22 Score=207.88 Aligned_cols=285 Identities=15% Similarity=0.165 Sum_probs=233.6
Q ss_pred ccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHH
Q 007913 78 CLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVA 157 (585)
Q Consensus 78 ~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g 157 (585)
++|.+|.+++.++.++|+|++..|+..++. +|+.++++++++++.+++.+++++|+++++|+. +.+.|.++.+||..|
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~-a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~~g 79 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQS-AGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKILG 79 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhc-cCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHHHH
Confidence 589999999999999999999999988776 888899999999999999999999999999987 799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 007913 158 YIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWI 237 (585)
Q Consensus 158 ~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~ 237 (585)
++.+|.+++......+......++++..... .+.+ .....+.+++++...+..|.|..+|++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~tp---------------~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i 143 (359)
T TIGR00912 80 RLLSILFILYFFLIAAYLIRIFADFIKTYLL-PRTP---------------IIVIIILIIIVSIYIVRKGIEVLLRTAEI 143 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC---------------HHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 9999999988888877888888888776543 1111 23667777888889999999999999999
Q ss_pred HHHHHHHH-HHHHHHhheecccCCCCCCCCCcChhHHHHHHH-HHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHH
Q 007913 238 SSIVSSCV-IVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAA-VVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMI 315 (585)
Q Consensus 238 ~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~ 315 (585)
+..+++.. ++++........+.+|..|..++|+.+.+.+.. ...++|.|+|......+|+||| |+.||++..+..++
T Consensus 144 ~~~~~i~~~~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~~~~~~~~ 222 (359)
T TIGR00912 144 LLIIFLILFILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK-KKIKKSIIKAIIIG 222 (359)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-hhhHHHHHHHHHHH
Confidence 99888777 344444444455677888888888888888876 7889999999999999999997 57999999999999
Q ss_pred HHHHHHHHHHHHhccccccccc-ccHHHHHHHHhCcH-H---HHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 007913 316 TAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMN-W---AKYLVSVCALKGMTTSLLVGSLGQARYTT 381 (585)
Q Consensus 316 ~~~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 381 (585)
+++|.+..+...+..+.++.+. ..|..+..+....+ . ...++......+.+.....+++..++.+.
T Consensus 223 ~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~ 293 (359)
T TIGR00912 223 VLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLS 293 (359)
T ss_pred HHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999898887764 45888888855433 2 22344445555666666667777777654
No 41
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=99.90 E-value=2.7e-23 Score=209.29 Aligned_cols=392 Identities=16% Similarity=0.223 Sum_probs=313.8
Q ss_pred ccccChhHHHHH-hhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhcc-CCCchhHhHHHHh
Q 007913 76 QKCLTWWDLTWL-CFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIP-VAGGSFSFLRVEL 152 (585)
Q Consensus 76 ~r~l~~~~~~~i-~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P-~~Gg~y~~~~~~~ 152 (585)
+-++|+|+.++. ++-++.|.-+|...+++.++ +|.+ .++...++.++++.++++..-++++-- ++||.|..+++.+
T Consensus 27 ~v~fg~~~gv~~~cmlni~gv~lflrl~wivgq-agi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~sl 105 (643)
T KOG2083|consen 27 PVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQ-AGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSL 105 (643)
T ss_pred ceEEeeeehhhhhhhHHHHHHHHhhhhhheeec-chhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEecc
Confidence 446999999887 56677899999999999988 8886 778788889999999999999999887 8999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhh
Q 007913 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (585)
Q Consensus 153 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 232 (585)
|+..|...|..|.++...+++.+..++++.+..++. .. +...++.++.+..+++..+|..|+++..
T Consensus 106 g~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~-~~-------------s~~~i~gi~~vt~~ill~i~~ag~~w~~ 171 (643)
T KOG2083|consen 106 GPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFE-TE-------------SKEMIDGIGSVTVLILLAINVAGVEWEA 171 (643)
T ss_pred cccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHH-hc-------------cHHHhcchhHHHHHHHHHhhhccchhHH
Confidence 999999999999999999999999999999999987 22 1112345788888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhheeccc-CC---------CC-CCCCCc--ChhHHHHHHHHHHHHhhcHhHHhhhhhhhcC
Q 007913 233 WLNWISSIVSSCVIVFVIIVGFVHGK-TT---------NL-DPFLPY--GTEGVFEAAAVVYWSYTGFDMVATMAEETKK 299 (585)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~---------~~-~~~~~~--g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~ 299 (585)
++|.++..+.++.+.-+++..+...+ .+ ++ +++.|+ .-..++..+...+.+.+|.-+..+++++.|+
T Consensus 172 k~q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~ 251 (643)
T KOG2083|consen 172 KLQIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKD 251 (643)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCC
Confidence 99999998888888777766554322 00 01 011121 0134666677778899999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHhccccccccc-----cc----HHHHHHHHhC-cHHHHHHHHHHHHHHHHHHH
Q 007913 300 PSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-----NA----AYSIAFRQIG-MNWAKYLVSVCALKGMTTSL 369 (585)
Q Consensus 300 p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 369 (585)
|++++|++...++.....+|..+..-.....-.+.... .. .+.+-++... ..........+...+.+++.
T Consensus 252 Pq~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~Pl~~AGi~~a~LSsa 331 (643)
T KOG2083|consen 252 PQKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFGPLITAGILAAELSSA 331 (643)
T ss_pred chhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcccchhhHHHHHHHHHH
Confidence 99999999999999999999887766544333222211 11 2222222111 12223455667777888888
Q ss_pred HHhhhhhhHHHHHHHhcCCCc--hhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007913 370 LVGSLGQARYTTQIARAHMIP--PWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIALLV 447 (585)
Q Consensus 370 ~~~~~~~sR~l~~~ardg~lP--~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 447 (585)
.+++.+++++++++.+|+..| .+|+|-.++++.|.++..++..++..++..+..+.+..+.+...+..|...+.+++.
T Consensus 332 lsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~syAlinf~~f~ 411 (643)
T KOG2083|consen 332 LSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLSYALINFSCFH 411 (643)
T ss_pred HHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhhhhccchhhhh
Confidence 999999999999999999999 788898999999999999999999988889999999999999999999999999998
Q ss_pred HHhccCCCCCCCchh--HHHHHHHHHHHHHhHHhhhc
Q 007913 448 RRYYEKDVTPKNNLV--KFLVCLTVVVASSIGITAFW 482 (585)
Q Consensus 448 ~r~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 482 (585)
.+...++.+|+.... +|...++.+.|..+++..-|
T Consensus 412 aSl~~s~~wRp~f~~yn~wVSllGalKOG~ImFli~w 448 (643)
T KOG2083|consen 412 ASLAISEGWRPSFKFYNAWVSLLGALLCLAIMFLISW 448 (643)
T ss_pred hhhccccccCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877766664433 47899999999998888877
No 42
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.87 E-value=1.2e-18 Score=175.42 Aligned_cols=335 Identities=13% Similarity=0.152 Sum_probs=251.0
Q ss_pred hcccccccchhccHHhHhhccC-h-h-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHHHHHHHHH
Q 007913 89 FGSVVGSGIFVITGQEAKKHAG-P-A-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNIL 165 (585)
Q Consensus 89 ~~~~ig~gi~~~~~~~~~~~~G-~-~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~ 165 (585)
++.-+|+|.+..|...... +| . . ++++|+++++...+.+++ +.|++||.|++.++.+||..|++.+|..+
T Consensus 5 FamffGAGNlIfPp~lG~~-aG~~~~~a~lgf~ltgV~lpllgl~------av~~~gG~~~~l~~~~g~~f~~lf~~~~~ 77 (378)
T TIGR00796 5 FALFFGAGNIIFPPMLGLA-AGEHVWTAALGFLLTGVGLPLLGLI------ALALVGGGYDSLSARIGKVFGILFTVILY 77 (378)
T ss_pred HHHHHhhhHHhhhHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHh------eeeecCCCHHHHHHHhChHHHHHHHHHHH
Confidence 3344789999999988877 55 3 2 788999999999888887 78999999999999999999999999777
Q ss_pred HHHH-HH----HHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 007913 166 LEAV-VG----AAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSI 240 (585)
Q Consensus 166 l~~~-~~----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~ 240 (585)
+..- .. .+..+...+ +...++ ... ......+..+++..+..++++++.|...+++++++.
T Consensus 78 l~iGP~~aiPRtaa~s~e~~--i~p~~~-~~~------------~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP 142 (378)
T TIGR00796 78 LTIGPLFAIPRTATVSFEMG--IAPLLH-SPT------------SLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTP 142 (378)
T ss_pred HHHHhchhhhHHHHHHHHHH--HHhccC-ccc------------chHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHH
Confidence 5433 22 233333222 333333 100 001123566677777778999999999999999999
Q ss_pred HHHHHHHHHHHhheecccCCCCCCCCCcCh-hHHHHHHHHHHHHhh-------cHhHHhhhhh-hhcCCCCChhhHHHHH
Q 007913 241 VSSCVIVFVIIVGFVHGKTTNLDPFLPYGT-EGVFEAAAVVYWSYT-------GFDMVATMAE-ETKKPSRDIPIGLVGS 311 (585)
Q Consensus 241 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~-------G~e~~~~~~~-E~k~p~r~~p~ai~~~ 311 (585)
++++.++++++.++.+...+...+..+... ..+..++.-..+.+. |+-....+.+ |.|||+|+.|+.+..+
T Consensus 143 ~lLi~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G 222 (378)
T TIGR00796 143 ALLVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAG 222 (378)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999998887643221111111111 347777888888888 9888888888 9999999999999999
Q ss_pred H-HHHHHHHHHHHHHHHhcccccccc----cccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhc
Q 007913 312 M-CMITAVYCLMALALTMMVKYTEID----MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARA 386 (585)
Q Consensus 312 ~-~~~~~~y~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ard 386 (585)
+ ..+...|+...++..+..+.++.. .++.+.++.+...|+.+..++.+...++++++.++...+.++
T Consensus 223 ~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~-------- 294 (378)
T TIGR00796 223 LIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSE-------- 294 (378)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 9 666777888888887777655443 234667777788889999999999999999999998877554
Q ss_pred CCCchhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccCCCCCCCc
Q 007913 387 HMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIALLV--RRYYEKDVTPKNN 460 (585)
Q Consensus 387 g~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~--~r~~~~~~~~~~~ 460 (585)
+|+|.++| +|+++.++...+...+.....++.+.++..-...+.|-+.....+. +|++.|+.+|++|
T Consensus 295 -----~f~~~~~k--~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~~y~ 363 (378)
T TIGR00796 295 -----YFHKLVPK--LSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRAVYQ 363 (378)
T ss_pred -----HHHHhcCC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeee
Confidence 46677654 9999999888888777777789999998888777888777666665 7777777666655
No 43
>PHA02764 hypothetical protein; Provisional
Probab=99.85 E-value=3.8e-19 Score=165.81 Aligned_cols=279 Identities=11% Similarity=0.099 Sum_probs=175.1
Q ss_pred hcCCccccccChhHHHHHhhcccccccch-hccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhH
Q 007913 70 ESKQPLQKCLTWWDLTWLCFGSVVGSGIF-VITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFL 148 (585)
Q Consensus 70 ~~~~~l~r~l~~~~~~~i~~~~~ig~gi~-~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~ 148 (585)
++.+++-|+.+.+|.+...++.+.+ |.- ..+........|...+++|+++++++++.+++|+|+++++|++||.|.|.
T Consensus 5 ReSSGLVREvs~lDAF~~Nl~~m~~-Gi~Is~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYI 83 (399)
T PHA02764 5 RKSSGIIKSFNILDIFSINLLYMGI-LSGISYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYI 83 (399)
T ss_pred hhcCCceeeccHHHHHHHHHHhhcc-chhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEh
Confidence 3677899999999999999987732 221 11222222224555889999999999999999999999999999999999
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhh
Q 007913 149 RVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGT 228 (585)
Q Consensus 149 ~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 228 (585)
+|++||.+|++.||..|+.+..+.+..+-.-. ++ +. . .+.+.. ..+-.- ......+...|.
T Consensus 84 SRAFGP~~GFLvG~a~WLtl~~G~Pal~~l~~--~~--~~-i-~~~~~~------------f~~~~s-~~~i~~~i~~~~ 144 (399)
T PHA02764 84 RTAFSSKFYTIFGISLWLTYVLSQPILGDLVL--LN--FN-I-QNQFEQ------------FLIVES-LFPIVLLIIANK 144 (399)
T ss_pred HHhhCccHHHHHHHHHHHHHHhhcchhhheee--ee--ee-e-HHHHHH------------HHHHHH-HHHHHHHHHccc
Confidence 99999999999999999998887766432110 00 00 0 000000 011111 112222333567
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhheecccCCCCCCCCCcCh-hHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhH
Q 007913 229 RRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGT-EGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIG 307 (585)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~a 307 (585)
|..+|...++.....+ +.-+...+.-|+.. .+... .....+...-.-.|.=.|+..+.++|.||-+|....+
T Consensus 145 ~~~~~~v~il~~a~~i------~aif~~~~s~n~~~-~~f~~snt~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~~g 217 (399)
T PHA02764 145 KIYAKIVDILAIAQII------IAIFIAFKSFNFQY-QNFTISNTLLSALLFDLSAFIFINAISYIAGEIKNIKKSSMIG 217 (399)
T ss_pred HHHHHHHHHHHHHHHH------HHHHhhccceeEEE-cceeehHHHHHHHHHHHHHHHHhccHHHHHHHhhcchhhhhhh
Confidence 7777776664433332 11111122222210 01111 1245555555667777899999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcC
Q 007913 308 LVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAH 387 (585)
Q Consensus 308 i~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg 387 (585)
-..+...+.++-+..+. + + . .++.+.+....++-+....-..||+.++|+-|+
T Consensus 218 yf~s~~~~~~~~ii~sy--------~-----n-~-------------~il~~~~~~w~~~y~~~~~~~~srli~~~~fd~ 270 (399)
T PHA02764 218 YFVSYGIVAILSIIDSY--------S-----N-L-------------NILFALMPIWFFSYMPIANKIQSRLIQTMSFDK 270 (399)
T ss_pred hHHHHHHHHHHHHHHhh--------h-----h-H-------------HHHHHHHHHHHHhheeeecchHHHHHHHHHhhh
Confidence 77776665554443321 0 0 1 111111233333444445556899999999999
Q ss_pred CCchhhhccCCCCCchH
Q 007913 388 MIPPWFALVHPKTQTPI 404 (585)
Q Consensus 388 ~lP~~~~~~~~~~~~P~ 404 (585)
.+|++|+|+|| ++|+
T Consensus 271 ~lpe~f~k~~~--nv~~ 285 (399)
T PHA02764 271 VLPEKFSKINP--NVLL 285 (399)
T ss_pred hchHHHhccCC--Ccee
Confidence 99999999984 6787
No 44
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.84 E-value=4.3e-17 Score=167.18 Aligned_cols=353 Identities=16% Similarity=0.165 Sum_probs=265.5
Q ss_pred cccChhHHHHHhhcccccccchhccHHhHhhccCh-hHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchh
Q 007913 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGP-AIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDF 155 (585)
Q Consensus 77 r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~ 155 (585)
|+-+.+...++..|+.+|+|++..|-.... +|- ...+..+++..++...++.++|...+.|+..+.-..+++.+||.
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~--~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAG--AGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKK 78 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHh--CchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChH
Confidence 456778899999999999999999977643 564 37788889999999999999999999999889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHH
Q 007913 156 VAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLN 235 (585)
Q Consensus 156 ~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 235 (585)
++++.+..+++.......++..+.++.+.+.++......+ .......++.+++..+.+.|.|...|++
T Consensus 79 g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~------------~~~~~~~~f~~i~~~iv~~g~~~v~~~n 146 (394)
T PF03222_consen 79 GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDL------------SPWLSSLLFTIIFGGIVYFGTKAVDRIN 146 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCC------------cHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999998888888888999999999988872111111 1235666677777888889999999999
Q ss_pred HHHHHHHHHHHHHHHHhheecccCCCCCCC--CCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHH
Q 007913 236 WISSIVSSCVIVFVIIVGFVHGKTTNLDPF--LPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMC 313 (585)
Q Consensus 236 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~ 313 (585)
..+...+++.++.+.+..+.+.+.+|.... .+..+...+.+++..+++|.-...++.+.+..++-+|+++|++..+..
T Consensus 147 ~~lv~~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~ 226 (394)
T PF03222_consen 147 RVLVFGMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSL 226 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHH
Confidence 999999999999999988888887776542 234567788899999999999999999999998767889999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccc----cc---cHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHh
Q 007913 314 MITAVYCLMALALTMMVKYTEID----MN---AAYSIAFR-QIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIAR 385 (585)
Q Consensus 314 ~~~~~y~l~~~~~~~~~~~~~~~----~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ar 385 (585)
+..++|++-..++.+..|.++.. .+ +++....+ ..++++...+..+...++..+|..+...+....+...
T Consensus 227 i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~-- 304 (394)
T PF03222_consen 227 IPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADL-- 304 (394)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 99999999999888888877642 12 24444444 4567888888999999999999999888877766432
Q ss_pred cCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccC
Q 007913 386 AHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF--SSLNILSSVFSFSTLSIFMLMAIA-LLVRRYYEK 453 (585)
Q Consensus 386 dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~-~l~~r~~~~ 453 (585)
|.+.+++.+ -.....++.+...+++.. ..|....+..+....+.+.+.... ..+.|++++
T Consensus 305 -------~k~~~~~~~-r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG~~~~il~~ilP~~m~~~~r~~~~ 367 (394)
T PF03222_consen 305 -------FKLKNNSSG-RLKTWLLTFLPPLIFALLFPNGFLIALGYAGIGIAILLGILPALMVWKARKRKP 367 (394)
T ss_pred -------HcCCccccc-hHHHHHHHHHhHHHHHHHCcHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHcccC
Confidence 222111111 123344455555555555 335555555554444444443333 334444443
No 45
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.81 E-value=3.9e-17 Score=167.07 Aligned_cols=289 Identities=13% Similarity=0.117 Sum_probs=220.2
Q ss_pred hHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHH----HHhhhhccC-CCchhHhHHHHhchhH
Q 007913 82 WDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCY----TEFAVEIPV-AGGSFSFLRVELGDFV 156 (585)
Q Consensus 82 ~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~----~el~s~~P~-~Gg~y~~~~~~~g~~~ 156 (585)
+.......++++|+|++..|... |..+++.++++++++++.++.+ .|.....|. ..+.++++++.+||.+
T Consensus 6 ~~w~~~l~gt~IGaGiL~LP~~a-----g~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~ 80 (397)
T TIGR00814 6 TGWMLGLYGTAIGAGVLFLPIQA-----GLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNW 80 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-----HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHH
Confidence 34556677888999999999752 3344666667666666655554 444333344 6789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 007913 157 AYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNW 236 (585)
Q Consensus 157 g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~ 236 (585)
|.+.++.|++........++....+.+...+..... .+.+ ...+.++.+++.+..++..|.|...|++.
T Consensus 81 G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~-------~~~p----~~~i~~lilv~il~~iv~~G~~~i~r~~~ 149 (397)
T TIGR00814 81 GILITLLYFFAIYPILLIYSVAITNDSASFLVNQLG-------TAPP----LRGLLSLALILILVAIMSFGEKLLFKIMG 149 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCc----HHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 999999999999999888888887777776641000 0000 11256667777778999999999999999
Q ss_pred HHHHHHHHHHHHHHHhheecccCCCCC--CCCCcChhHHHHHHHHHHHHhhcHhHHhhhh----hhhcCC---CCChhhH
Q 007913 237 ISSIVSSCVIVFVIIVGFVHGKTTNLD--PFLPYGTEGVFEAAAVVYWSYTGFDMVATMA----EETKKP---SRDIPIG 307 (585)
Q Consensus 237 ~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~----~E~k~p---~r~~p~a 307 (585)
++...+++.++.+.+..+.+.+.+|.. +.....+..++.++...+|+|.|+|..++++ +|.+|| +|+..|+
T Consensus 150 il~~~~ii~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~ 229 (397)
T TIGR00814 150 PLVFPLVLILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRI 229 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHH
Confidence 999999998888888888888877764 2222345678999999999999999999998 777655 4677899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccc----c-cHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 007913 308 LVGSMCMITAVYCLMALALTMMVKYTEIDM----N-AAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQ 382 (585)
Q Consensus 308 i~~~~~~~~~~y~l~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 382 (585)
+..+..+..++|+...+.+.+..++++... + +.+....+....+....+..+...++..+|..+...+....+..
T Consensus 230 i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~ 309 (397)
T TIGR00814 230 MKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNG 309 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999888877532 2 22333444667788888888888888888888888888888777
Q ss_pred HHhc
Q 007913 383 IARA 386 (585)
Q Consensus 383 ~ard 386 (585)
+-++
T Consensus 310 l~~~ 313 (397)
T TIGR00814 310 IVLN 313 (397)
T ss_pred HHHH
Confidence 7643
No 46
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.79 E-value=1.1e-15 Score=154.80 Aligned_cols=343 Identities=12% Similarity=0.051 Sum_probs=246.2
Q ss_pred ChhHHHHHhhcccccccchhccHHhHhhccCh-hHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHH
Q 007913 80 TWWDLTWLCFGSVVGSGIFVITGQEAKKHAGP-AIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAY 158 (585)
Q Consensus 80 ~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~ 158 (585)
+.+...++..|+.||+|++..|-.... +|- .+.+..+++.+++..+++.+.|...++|..-+.-..+++.+||.+..
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~--~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAG--AWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHH
Confidence 677789999999999999998876543 554 37788899999999999999999999998888999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 007913 159 IAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWIS 238 (585)
Q Consensus 159 ~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 238 (585)
+.+..+.+-.-....+|..+.++.++..++... .+ +. .....++.+.+++..+.+.|.|...|+++++
T Consensus 88 i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~--~~-------~i---~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l 155 (415)
T PRK09664 88 ISGITVAFVLYILTYAYISANGAIISETISMNL--GY-------HA---NPRIVGICTAIFVASVLWISSLAASRITSLF 155 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc--cC-------CC---cHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 887777666666667777778888888775100 00 00 0125668888899999999999999999999
Q ss_pred HHHHHHHHHHHHHhheecccCCCCCCCCC-cC----hhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHH
Q 007913 239 SIVSSCVIVFVIIVGFVHGKTTNLDPFLP-YG----TEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMC 313 (585)
Q Consensus 239 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g----~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~ 313 (585)
...+++.++.++.....+.+.++...... .+ +..++.+++..+++|.=...++.+..-.++-.|+++|+++.+..
T Consensus 156 ~~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~ 235 (415)
T PRK09664 156 LGLKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSL 235 (415)
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHH
Confidence 99999988887777777776665542111 11 23467788888888888888888888887656789999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccc----ccc---HH-HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHh
Q 007913 314 MITAVYCLMALALTMMVKYTEID----MNA---AY-SIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIAR 385 (585)
Q Consensus 314 ~~~~~y~l~~~~~~~~~~~~~~~----~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ar 385 (585)
+..++|++-..++.+..|+++.. +.+ .+ ....+...+++...+..+...++..+|..+...+....+..+-+
T Consensus 236 IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~ 315 (415)
T PRK09664 236 LALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFK 315 (415)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999988877642 111 22 22333556678888888888888888888877666666554332
Q ss_pred cCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007913 386 AHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIALL 446 (585)
Q Consensus 386 dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 446 (585)
.+ + +.+-......++.+...++.++.+-..+..+.-.+.........+..+
T Consensus 316 ~~---------~-~~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~~~il~~ilP~l 366 (415)
T PRK09664 316 ID---------N-SHGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLCATIWAVIIPAV 366 (415)
T ss_pred CC---------C-ccccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1 111122234456777777777755444444444444333333344333
No 47
>PRK10483 tryptophan permease; Provisional
Probab=99.78 E-value=1.2e-15 Score=154.69 Aligned_cols=344 Identities=13% Similarity=0.035 Sum_probs=251.5
Q ss_pred cccccChhHHHHHhhcccccccchhccHHhHhhccCh-hHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhc
Q 007913 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGP-AIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELG 153 (585)
Q Consensus 75 l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g 153 (585)
.|++.+.+...++..|+.||+|++..|-.... .|- .+....+++.+++..+++.+.|...++|+.-+....+++.+|
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~--~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG 84 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSG--AWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLG 84 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcC
Confidence 35679999999999999999999998876543 554 377888999999999999999999999988889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhH
Q 007913 154 DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (585)
Q Consensus 154 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 233 (585)
|.+..+.+..+.+-.-....+|..+.++.+...++. .+ + +. .....++++.+++..+.+.|.|...|
T Consensus 85 ~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~-~~--~-----~i-----~~~~~~llF~~~~~~iv~~gt~~vd~ 151 (414)
T PRK10483 85 KGWNVVNGISIAFVLYILTYAYISASGSILHHTFAE-MS--L-----NV-----PARAAGFGFALLVAFVVWLSTKAVSR 151 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHh-cC--C-----CC-----cHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 998887777766665666677777788888887751 00 0 00 12367788888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhheecccCCCCCCC--CC-cChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHH
Q 007913 234 LNWISSIVSSCVIVFVIIVGFVHGKTTNLDPF--LP-YGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVG 310 (585)
Q Consensus 234 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~-~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~ 310 (585)
+++++...+++.++.++...+.+.+.+|.... .. ..+...+.+++..+++|.=...++.+.+..++-.|++.|+++.
T Consensus 152 ~n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~i 231 (414)
T PRK10483 152 MTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVY 231 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHH
Confidence 99999999999888777776666665544321 11 1234577888899999998899999988887655689999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccc----ccc---HHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 007913 311 SMCMITAVYCLMALALTMMVKYTEID----MNA---AYSIAFR-QIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQ 382 (585)
Q Consensus 311 ~~~~~~~~y~l~~~~~~~~~~~~~~~----~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 382 (585)
+..+..++|++-..++.+..|.++.. .++ .+....+ ..+.++...+..+...++..+|..+...+....+..
T Consensus 232 Gs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D 311 (414)
T PRK10483 232 GTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLAD 311 (414)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877642 122 2323333 456678888888888889999888877777776665
Q ss_pred HHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 007913 383 IARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAI 443 (585)
Q Consensus 383 ~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 443 (585)
+-+-+ +++.+ ......++.+...++.+..+-..+..+.-.+.........+
T Consensus 312 ~~k~~---------~~~~~-r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~~~il~~il 362 (414)
T PRK10483 312 LFGFD---------DSAMG-RFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLAATIWAAIV 362 (414)
T ss_pred HhCCC---------Ccccc-ceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44321 11111 11234456777777777754444444444443333333333
No 48
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.75 E-value=1.2e-14 Score=148.36 Aligned_cols=347 Identities=16% Similarity=0.154 Sum_probs=251.4
Q ss_pred ChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHH
Q 007913 80 TWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAY 158 (585)
Q Consensus 80 ~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~ 158 (585)
+.+...++..|+.+|+|++..|-.... +|.. +....++++.++...++.++|.....|+..+....+++.+||.+++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~--~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~ 81 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAG--VGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQW 81 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHH
Confidence 567788899999999999999876643 5654 6777888888899999999998888887778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 007913 159 IAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWIS 238 (585)
Q Consensus 159 ~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 238 (585)
+.+..+++.......+|..+.++.+...++..-.. +. ......+.+.++...+.+.|.|...|++.++
T Consensus 82 i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~-------~i-----~~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L 149 (403)
T PRK15132 82 LTGFSMMFLMYALTAAYISGAGELLASSISDWTGI-------SM-----SPTAGVLLFTLVAGGVVCVGTSSVDLFNRFL 149 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC-------CC-----ChHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999988888888888888777776665410000 00 0124556666777778888999999999999
Q ss_pred HHHHHHHHHHHHHhheecccCCCCCCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHH
Q 007913 239 SIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAV 318 (585)
Q Consensus 239 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~ 318 (585)
...+++.++.+....+.+.+.+|+... +.+..-.+.+++..+++|.=...++.+....++-+|+++|++..+..+..++
T Consensus 150 ~~~~ii~~~~~~~~l~p~~~~~~L~~~-~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~ 228 (403)
T PRK15132 150 FSAKIIFLVVMLALMMPHIHKVNLLTL-PLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVA 228 (403)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhcC-CccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 999998888777777777777766421 1111237788889999999999999999998877789999999999999999
Q ss_pred HHHHHHHHHhcccccccc----ccc---HHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCc
Q 007913 319 YCLMALALTMMVKYTEID----MNA---AYSIAFR-QIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIP 390 (585)
Q Consensus 319 y~l~~~~~~~~~~~~~~~----~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP 390 (585)
|++-..++.+..|.++.. ++. +..+..+ ..+.++...+..+...++..+|..+...+....+..+-+.+
T Consensus 229 yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~--- 305 (403)
T PRK15132 229 YIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRR--- 305 (403)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---
Confidence 999999999999877642 121 3333333 56778888999999999999999998888888777654321
Q ss_pred hhhhccCCCCCchHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Q 007913 391 PWFALVHPKTQTPINATLLVTTLSAIIALFS--SLNILSSVFSFSTL-SIFMLMAIALLVRRYY 451 (585)
Q Consensus 391 ~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~--~~~~l~~~~~~~~~-~~~~~~~~~~l~~r~~ 451 (585)
.+++.+ .....++.+...+++... .|....+..+.... +.+.+......+.|++
T Consensus 306 -----~~~~~r--~~~~~l~flppli~a~~~P~~F~~al~~aG~~~ail~~ilP~~m~~~~r~~ 362 (403)
T PRK15132 306 -----NTVGGR--LQTGLITFLPPLAFALFYPRGFVMALGYAGVALAVLALLLPSLLVWQSRKQ 362 (403)
T ss_pred -----ccccCC--chhehhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 011112 223445555565555553 34444455444332 2233333344444433
No 49
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.72 E-value=5.5e-14 Score=145.31 Aligned_cols=287 Identities=14% Similarity=0.064 Sum_probs=229.7
Q ss_pred CccccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCC-chhHhHHH
Q 007913 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAG-GSFSFLRV 150 (585)
Q Consensus 73 ~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~G-g~y~~~~~ 150 (585)
++.+++.+..+.+.+..++.+|+|++..|-... . +|-. .++..++++.++....+.+.|.....|+.. +.+.-+++
T Consensus 3 ~~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~-~-~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~ 80 (415)
T COG0814 3 SSMKKTSSDLGGVLILAGTAIGAGVLFLPVAFG-G-GGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVED 80 (415)
T ss_pred ccccCCcchHHHHHHHHccccccchhhhhHHhc-C-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHH
Confidence 345677888999999999999999999887552 2 5654 778889999999999999999999999884 99999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhh
Q 007913 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (585)
Q Consensus 151 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (585)
.+||.++++.+..+.+.......++....++.+...++..-.. +........+++...+..+.+.|.+.
T Consensus 81 ~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~-----------~~~~r~~~~lif~~~~~~l~~~~~~~ 149 (415)
T COG0814 81 YLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGL-----------NPLPRKLGSLIFALVLAFLSWLGTLA 149 (415)
T ss_pred HhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhccc-----------CCcchHHHHHHHHHHHHHHHHhchhH
Confidence 9999999999999999999999999999999998887721100 00123466777777778899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhheecccCCCCCCC--C-CcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCC-hhh
Q 007913 231 SSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPF--L-PYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRD-IPI 306 (585)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~-~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~-~p~ 306 (585)
.-|.+..+...+++.++++......+.+.++.... . +..+..++.+++..+++|.+......+..|+|+++++ ++|
T Consensus 150 ~lk~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k 229 (415)
T COG0814 150 VLKITSLLVFGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRK 229 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHH
Confidence 99999999999999999888888887766655332 2 2456778999999999999999999999999988777 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccc-------cccHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHh
Q 007913 307 GLVGSMCMITAVYCLMALALTMMVKYTEID-------MNAAYSIAFR-QIGMNWAKYLVSVCALKGMTTSLLVG 372 (585)
Q Consensus 307 ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (585)
++..+..+..++|+...+......+.+.-+ +......+.. ....+.......+..+.+..++..+.
T Consensus 230 ~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv 303 (415)
T COG0814 230 AILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGV 303 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999998888876322 2233444433 34555566666777777776665543
No 50
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.71 E-value=2.2e-14 Score=144.65 Aligned_cols=285 Identities=15% Similarity=0.172 Sum_probs=238.4
Q ss_pred ccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHH
Q 007913 78 CLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVA 157 (585)
Q Consensus 78 ~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g 157 (585)
|+|.+|...+.+..++|.++...|+..++. +| .+|++.+++++..+..++.+..+.+++|+. ....+.++.+||..|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~-~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~-~l~~~~~~~~Gk~lg 77 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQ-AG-DAWISVLLGGLIGLLLALLIYYLLKRFPGK-TLVEISEKLFGKWLG 77 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhCcHHH
Confidence 478999999999999999999999998877 56 889999999999999999999999999975 789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 007913 158 YIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWI 237 (585)
Q Consensus 158 ~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~ 237 (585)
.+.+..+.+.+....+.....+++.+...+- .+.+ ...+...+++.+......|.+..+|...+
T Consensus 78 ~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l-p~TP---------------~~~i~~~~ll~~~y~a~~G~e~i~R~~~~ 141 (320)
T PF03845_consen 78 KIINLLYILYFLLISALVLREFSEFIKTYLL-PETP---------------IWVIILLFLLVAAYAARKGIEVIARVAEI 141 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcCC---------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999999999999988764 1222 23677777888889999999999999998
Q ss_pred HHHHHHHHHHHHHHhheecccCCCCCCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHH
Q 007913 238 SSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITA 317 (585)
Q Consensus 238 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~ 317 (585)
...+.++.++.+........+.+|..|..+.|+..++.+.....+.|.|.|....+...+|||+ +..|....+..++++
T Consensus 142 ~~~~~~i~~~~i~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~-~~~k~~~~~~~~~~~ 220 (320)
T PF03845_consen 142 LFPIFLILLLLILLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKK-KLKKSLLIAILISGL 220 (320)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHHHHHH
Confidence 8888888888788777888888899999999999999999899999999999999999999974 568999999999999
Q ss_pred HHHHHHHHHHhccccccccc-ccHHHHHHHHhCcH----HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 007913 318 VYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMN----WAKYLVSVCALKGMTTSLLVGSLGQARYTTQ 382 (585)
Q Consensus 318 ~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 382 (585)
++.+..+...+..+.++... .-|..+..+....+ -...++...-..+.+......++..++.+..
T Consensus 221 ~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~ 290 (320)
T PF03845_consen 221 FLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQ 290 (320)
T ss_pred HHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888776544 45777777744322 2334444555556666666677777776554
No 51
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.66 E-value=6e-13 Score=135.06 Aligned_cols=289 Identities=13% Similarity=0.100 Sum_probs=224.5
Q ss_pred HHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhc-cCCCchhHhHHHHhchhHHHHHHH
Q 007913 85 TWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEI-PVAGGSFSFLRVELGDFVAYIAAG 162 (585)
Q Consensus 85 ~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~-P~~Gg~y~~~~~~~g~~~g~~~g~ 162 (585)
.....|+.+|+|++.+|-... . +|.. .++..+++..++...+..+.|..... |+..+.-..+++.+||.++.+.+.
T Consensus 25 ~l~l~GTAIGAGmLfLPI~~g-~-~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~i 102 (443)
T PRK13629 25 TLGLFGTAIGAGVLFFPIRAG-F-GGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITF 102 (443)
T ss_pred HHHHHHHHHhHHHHHHHHHHh-c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHH
Confidence 366778889999999997653 2 5654 77778889999999999999999988 555678888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 007913 163 NILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVS 242 (585)
Q Consensus 163 ~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~ 242 (585)
.|++........|.....+.+.+.+. +. .+. ++. ...+.++++++++..+.+.|.|..-|++.++...+
T Consensus 103 lYff~ly~ll~aY~~~itn~l~sfl~-~q---l~~--~~~-----~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~ 171 (443)
T PRK13629 103 LYFFAICPLLWIYGVTITNTFMTFWE-NQ---LGF--APL-----NRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPF 171 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hh---cCc--CCc-----cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99998888888888777777776533 00 000 000 12478888899999999999999999999999999
Q ss_pred HHHHHHHHHhheecccCCCCCCCC----Cc----Ch-hHHHHHHHHHHHHhhcHhHHhhhhhh----hc-----C-CCCC
Q 007913 243 SCVIVFVIIVGFVHGKTTNLDPFL----PY----GT-EGVFEAAAVVYWSYTGFDMVATMAEE----TK-----K-PSRD 303 (585)
Q Consensus 243 ~~~~~~~~i~~~~~~~~~~~~~~~----~~----g~-~~~~~~~~~~~~~~~G~e~~~~~~~E----~k-----~-p~r~ 303 (585)
++.++.+.+..+.+.+.+|+.... +. +. ..++.+++..+++|.=.-.++.++.. .+ | .+|+
T Consensus 172 i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k 251 (443)
T PRK13629 172 IASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERK 251 (443)
T ss_pred HHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHH
Confidence 999999999999888877765211 11 11 24777888888888777777776655 42 2 2477
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccccccc----cccH-HHHHHHHhCc---------HHHHHHHHHHHHHHHHHHH
Q 007913 304 IPIGLVGSMCMITAVYCLMALALTMMVKYTEID----MNAA-YSIAFRQIGM---------NWAKYLVSVCALKGMTTSL 369 (585)
Q Consensus 304 ~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 369 (585)
..|++..+..+..++|++..+.+.+..++++.. ++.+ +....+..++ ++...+..+...++..+|.
T Consensus 252 ~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSF 331 (443)
T PRK13629 252 CSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSF 331 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999988863 3335 5555665554 6788888888888999999
Q ss_pred HHhhhhhhHHHHHHHhc
Q 007913 370 LVGSLGQARYTTQIARA 386 (585)
Q Consensus 370 ~~~~~~~sR~l~~~ard 386 (585)
++...+..-.+..+.+.
T Consensus 332 lGv~LGl~E~l~gl~~~ 348 (443)
T PRK13629 332 FGHYLGTLEGLNGLILK 348 (443)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99888888888887753
No 52
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=99.39 E-value=5.1e-10 Score=113.33 Aligned_cols=292 Identities=15% Similarity=0.165 Sum_probs=192.9
Q ss_pred CccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccC-------CCchh
Q 007913 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPV-------AGGSF 145 (585)
Q Consensus 73 ~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~-------~Gg~y 145 (585)
++-++++|.++.+..+++..+|.|-.......... +||+++....+.+++...+.++=.-|+.+|.+ .||..
T Consensus 13 ~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~-GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~ 91 (416)
T PF01235_consen 13 KEEEGGISPFQALCTALAGTVGTGNIAGVATAIAI-GGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPM 91 (416)
T ss_pred CCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHH
Confidence 33456899999999999999999998888777766 99997666777788888888888888877763 37899
Q ss_pred HhHHHHhchhH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHH
Q 007913 146 SFLRVELGDFV-AYIAAGNILLEAVVG-AAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGI 223 (585)
Q Consensus 146 ~~~~~~~g~~~-g~~~g~~~~l~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 223 (585)
+|.++.+|.++ +.+.+......+... ....+...++.+...++ .+ ....++++.++..++
T Consensus 92 yyi~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f~-i~-----------------~~~~gi~l~~l~~~v 153 (416)
T PF01235_consen 92 YYIEKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAFG-IP-----------------PWITGIILAILVALV 153 (416)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcc-cc-----------------HHHHHHHHHHHHHHH
Confidence 99999998653 333333323333222 33334444444444333 11 136677777888888
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHhheecccCCCCC---------CCCCc----ChhHHH------HHHHHHHHHh
Q 007913 224 AMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLD---------PFLPY----GTEGVF------EAAAVVYWSY 284 (585)
Q Consensus 224 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------~~~~~----g~~~~~------~~~~~~~~~~ 284 (585)
..-|+|..+++...+..++.+.-++..+..+.. +.++.. .|.+. |..|.. .|+.=..|+-
T Consensus 154 i~GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~-n~~~ip~~~~~If~~AF~~~aa~GG~~G~~i~~ai~~Gv~Rg~fSN 232 (416)
T PF01235_consen 154 IFGGIKRIAKVSEKLVPFMAILYILGGLIIIII-NIDQIPAAFSLIFSSAFTPKAAFGGFAGSTIMMAIRQGVARGLFSN 232 (416)
T ss_pred HHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHcCCccchhhHHHHHHHHHHHHhhhhhhccC
Confidence 889999999999999888877665544443321 111111 23332 222211 2333334444
Q ss_pred ---hcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhccccccc---ccccHHHHHHHHhCcHHHHHHHH
Q 007913 285 ---TGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEI---DMNAAYSIAFRQIGMNWAKYLVS 358 (585)
Q Consensus 285 ---~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 358 (585)
.|.....|-+.|.++|.|.--.++.-..+-+.++..++.+.+.....++.. +...-...+++..-++++..++.
T Consensus 233 EAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v~ 312 (416)
T PF01235_consen 233 EAGLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYFVA 312 (416)
T ss_pred CCCCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHHHH
Confidence 677888888899999988776777666665666666666665544332221 11222345666666688899999
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHH
Q 007913 359 VCALKGMTTSLLVGSLGQARYTTQIA 384 (585)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~sR~l~~~a 384 (585)
+..++-.+++.+++.+..-+.+.-+.
T Consensus 313 i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 313 IALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999888887766544
No 53
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.35 E-value=6.8e-10 Score=114.06 Aligned_cols=352 Identities=13% Similarity=0.137 Sum_probs=215.5
Q ss_pred cccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCc-----hhHhH
Q 007913 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGG-----SFSFL 148 (585)
Q Consensus 75 l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg-----~y~~~ 148 (585)
.+|+-++++..+-.++.++|.|+..+|- +..+ .|.. .+...++.+++.+.++..+.+.-...+.-.| .-+..
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~-A~~~-lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~ 111 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLPY-ALAQ-LGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLG 111 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhHH-HHHh-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHH
Confidence 4678999999999999999999998884 4445 7765 5888899999999999999999888887777 77777
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhh
Q 007913 149 RVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGT 228 (585)
Q Consensus 149 ~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 228 (585)
+++||+..-.++++...+.....+..+....++.+...++....+. ...+ ...+.+..+++. +....+...
T Consensus 112 ~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~-------~~l~-~~~f~iif~~i~-~~~s~lp~~ 182 (437)
T KOG1303|consen 112 QAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLND-------NSLD-KQYFIIIFGLIV-LPLSQLPNF 182 (437)
T ss_pred HHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-------cccc-ceehhhhHHHHH-HHHHHCCCc
Confidence 8899988777888888777777777888888888888876211110 0000 011122111111 112223444
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhheecccCC--CCCCCCCcChhHH-HHHHHHHHHHhhcHhHHhhhhhhhcCCCCChh
Q 007913 229 RRSSWLNWISSIVSSCVIVFVIIVGFVHGKTT--NLDPFLPYGTEGV-FEAAAVVYWSYTGFDMVATMAEETKKPSRDIP 305 (585)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~g~~~~-~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p 305 (585)
.....+.....+..+.........+...+-.. ...+....+..+. +.++....|+|.|......+-..+|+|++ ++
T Consensus 183 ~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~-f~ 261 (437)
T KOG1303|consen 183 HSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPK-FK 261 (437)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchh-hh
Confidence 55555555555555555555555555544222 1111111112222 77888899999999999999999999977 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 007913 306 IGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQI-GMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIA 384 (585)
Q Consensus 306 ~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 384 (585)
|+...+..+++.+|+..++.-+...+++..+ +..... ...|.....++.+.+-.+++..-...-..-..-.+.
T Consensus 262 ~~~lis~~~~~~~y~~vai~GY~aFG~~~~~------~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~ 335 (437)
T KOG1303|consen 262 KALLISYIIVTFLYFPVAIIGYWAFGDSVPD------NILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLI 335 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhccccch------hhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHh
Confidence 9999999999999999999877766654332 122222 355666666666666666544332222222222211
Q ss_pred hcCCCchhhhc-cCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 007913 385 RAHMIPPWFAL-VHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFS--TLSIFMLMAIALLVR 448 (585)
Q Consensus 385 rdg~lP~~~~~-~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~l~~ 448 (585)
+ .-++.+.+ .+. .+.=.+... ......+-..++.|+.+.++.+.. ..+.+.+.++.++..
T Consensus 336 ~--~~~~~~~~~~~~-~R~~~Rt~~-v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~ 398 (437)
T KOG1303|consen 336 G--VKHPDFKKRSLV-LRLLVRTFF-VAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLI 398 (437)
T ss_pred c--cCCccccccccc-eeeehhhHH-HHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 11111221 100 111111111 111112222335677777777644 356777777776655
No 54
>PLN03074 auxin influx permease; Provisional
Probab=99.33 E-value=3.9e-09 Score=111.06 Aligned_cols=238 Identities=11% Similarity=0.101 Sum_probs=134.1
Q ss_pred cccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHH----HhhhhccCCCch-------
Q 007913 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYT----EFAVEIPVAGGS------- 144 (585)
Q Consensus 77 r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~----el~s~~P~~Gg~------- 144 (585)
+.-+..+...-.+.+.+|.|++..|.... . +|.. .++..++.++++..+++.+. |...+.|+.+-.
T Consensus 44 ~~~s~~~~~~~l~~~~vG~GILaLP~Af~-~-~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~ 121 (473)
T PLN03074 44 HGGSVYDAWFSCASNQVAQVLLTLPYSFS-Q-LGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQ 121 (473)
T ss_pred CCchHHHHHHHHHHHHHhHHHHhHHHHHH-H-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHH
Confidence 34566666667888889999998887653 4 7754 66677777777777777655 456666654321
Q ss_pred -hHhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHH
Q 007913 145 -FSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGI 223 (585)
Q Consensus 145 -y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 223 (585)
..-..+.+||.++.+......+.....+..+....++.+.......+...| ..+++.+.+.+.
T Consensus 122 ~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~~~~~~-------------~~i~~~v~~~~~--- 185 (473)
T PLN03074 122 WFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTW-------------TYIFGACCATTV--- 185 (473)
T ss_pred HHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCcCCCeE-------------EeehHHHHHHHH---
Confidence 222334678888776654443333333333333322222221110111111 112222222222
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHhheecccCCCCCCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCC
Q 007913 224 AMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRD 303 (585)
Q Consensus 224 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ 303 (585)
-.+..|...++..+.....+.....+.+......+......-.+.+...++.++..++|+|.|.-....+-.|||||+ +
T Consensus 186 ~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~-~ 264 (473)
T PLN03074 186 FIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-K 264 (473)
T ss_pred HccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHHhcccccHHHHHHhccChh-c
Confidence 234455555555444443333222223333323222222111123455677778889999999999999999999995 6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 007913 304 IPIGLVGSMCMITAVYCLMALALTMMVKYT 333 (585)
Q Consensus 304 ~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~ 333 (585)
.++....+...+...|+...+..+...+++
T Consensus 265 F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~ 294 (473)
T PLN03074 265 FKYIYLAATLYVLTLTLPSAAAVYWAFGDE 294 (473)
T ss_pred ccchHHHHHHHHHHHHHHHHHeeeeeechh
Confidence 898888888888888888766655555543
No 55
>PTZ00206 amino acid transporter; Provisional
Probab=99.29 E-value=1.4e-08 Score=107.29 Aligned_cols=245 Identities=13% Similarity=0.108 Sum_probs=154.1
Q ss_pred ChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHH
Q 007913 80 TWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAY 158 (585)
Q Consensus 80 ~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~ 158 (585)
|..+..+-.+.+++|+|++..|.... . +|.. .++..++.++++......+.+.+.+ ++.-...+-.+..+||...+
T Consensus 61 g~~~s~fnL~~~~iGaGILsLP~Af~-~-~G~v~giillil~a~ls~ys~~lL~~~~~~-~~~~sY~~la~~~~G~~g~~ 137 (467)
T PTZ00206 61 GIAASAFNIASSTVGAGIVGLPSAAN-S-SGLVMAMIYLIIITAMTIFSIYALGVAADK-TNIRTYEGVARVLLGPWGSY 137 (467)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHH-H-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHhCHHHHH
Confidence 55667777778889999998887653 3 6654 6666677777777777777776665 33345666667789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 007913 159 IAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWIS 238 (585)
Q Consensus 159 ~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 238 (585)
++....++.....+..+....++.+...+.......+.. ....+. .......+.+.+-+...+.++..+.+..+.
T Consensus 138 ~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~---~~~~~r--~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~ 212 (467)
T PTZ00206 138 YVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLK---QKSGNR--LLTSLMWLCFMLPLVIPRHIDSLRYVSTIA 212 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhh---hccCcE--EeeeehhhhHhhhcccccchHHHHHHHHHH
Confidence 999999888888889999999998888775221111100 000000 001111111222222345556665555444
Q ss_pred HHHHHHHHHHHHHhheecccCCCCC-----C-------CCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCC-CChh
Q 007913 239 SIVSSCVIVFVIIVGFVHGKTTNLD-----P-------FLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPS-RDIP 305 (585)
Q Consensus 239 ~~~~~~~~~~~~i~~~~~~~~~~~~-----~-------~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~-r~~p 305 (585)
....+...+.+++.......+++.. . .++ .....+.++....|+|.+.......-+|+|||. |+..
T Consensus 213 ~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~ 291 (467)
T PTZ00206 213 VSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFN-SGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFV 291 (467)
T ss_pred HHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEec-CchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHH
Confidence 3332222222222222221111111 0 111 113577889999999999999999999999974 6788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccc
Q 007913 306 IGLVGSMCMITAVYCLMALALTMMVKYT 333 (585)
Q Consensus 306 ~ai~~~~~~~~~~y~l~~~~~~~~~~~~ 333 (585)
+.+..++.++.++|.+..+.-+...+++
T Consensus 292 ~v~~~s~~i~~~lY~~~G~~GYl~fG~~ 319 (467)
T PTZ00206 292 LASTIAMGMCFTMYVLTAFFGYMDFGRN 319 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 9999999999999999998877666644
No 56
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=99.28 E-value=1e-08 Score=104.65 Aligned_cols=286 Identities=14% Similarity=0.159 Sum_probs=177.0
Q ss_pred cccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhcc---C----CCchhHhHH
Q 007913 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIP---V----AGGSFSFLR 149 (585)
Q Consensus 77 r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P---~----~Gg~y~~~~ 149 (585)
+++|.++.+..+++..+|.|-.......... +||+++....+++++...+.+.-.-++.++. + .||..+|.+
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~-GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~ 123 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAI-GGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIK 123 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHH
Confidence 4699999999999999999844444444555 9998644445556666666666655665554 2 245558888
Q ss_pred HHhc-hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhh
Q 007913 150 VELG-DFVAYIAAGNILLEA-VVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSG 227 (585)
Q Consensus 150 ~~~g-~~~g~~~g~~~~l~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 227 (585)
+.++ |++|.+.+.. .+.+ .......+...++.+...++ .+ .+..++++.++...+..-|
T Consensus 124 ~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~~-~~-----------------~~v~~i~l~~l~~~vi~GG 184 (425)
T TIGR00835 124 KGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAFN-VP-----------------KLVTGIVLTVLTALIIFGG 184 (425)
T ss_pred HHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHcC-Cc-----------------HHHHHHHHHHHHHHHHhcC
Confidence 8766 7777776665 3343 34455556666666654333 11 2356666677777776679
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhheecccCCCCC---------CCCCcC----hhH------HHHHHHHHHHHh---h
Q 007913 228 TRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLD---------PFLPYG----TEG------VFEAAAVVYWSY---T 285 (585)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------~~~~~g----~~~------~~~~~~~~~~~~---~ 285 (585)
.|..+++...+..+.....+...+..+. .+.+|.. .|.++. ..| +-.|+.=..|+- .
T Consensus 185 ik~Ia~v~~~lvP~m~~~Y~~~~l~ii~-~n~~~lp~~~~~If~~AF~~~a~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG~ 263 (425)
T TIGR00835 185 LKRIAKISSVVVPFMALLYVIMALYIII-MNIEQLPAVISLIFRSAFGGDAAAGGFAGSTVAQAIMIGVKRGLFSNEAGM 263 (425)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHHhhHHHHhcccccc
Confidence 9999999999998877766444332222 2222221 222322 222 112333344544 6
Q ss_pred cHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhccccccc-c-cccHH-HHHHHHhCcHHHHHHHHHHHH
Q 007913 286 GFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEI-D-MNAAY-SIAFRQIGMNWAKYLVSVCAL 362 (585)
Q Consensus 286 G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~-~-~~~~~-~~~~~~~~~~~~~~~~~~~~~ 362 (585)
|....+|-+.|++||.|.--.++.--.+-+.++..++.+.+.....+++. + +...+ ..+++...++++..++.+..+
T Consensus 264 Gsa~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~g~~lt~~af~~~~g~~g~~~v~i~~~ 343 (425)
T TIGR00835 264 GSAPIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLSGAQLTQQALSYGLGSFGAVFVAVALF 343 (425)
T ss_pred CcHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 77888888999999987766666555554555566666654443323211 1 11222 345665455688899999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHH
Q 007913 363 KGMTTSLLVGSLGQARYTTQI 383 (585)
Q Consensus 363 ~~~~~~~~~~~~~~sR~l~~~ 383 (585)
+-.+++.+++.+..-+.+.-+
T Consensus 344 lFaftTii~~~yyge~~~~yl 364 (425)
T TIGR00835 344 LFAFSTIIGWYYYGEKNAEFL 364 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999888887776654
No 57
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=99.26 E-value=3.4e-08 Score=98.98 Aligned_cols=291 Identities=17% Similarity=0.188 Sum_probs=200.1
Q ss_pred ccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccC-------CCchhH
Q 007913 74 PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPV-------AGGSFS 146 (585)
Q Consensus 74 ~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~-------~Gg~y~ 146 (585)
+-++.+|.++.+..+++..+|+|-.......... +||+++....+.+++...+.++=+-|+..|.+ .||.-+
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~-GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~y 136 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIAL-GGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAY 136 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHc-CCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHH
Confidence 3467799999999999999999998888777766 99996655666677888888888888888862 479999
Q ss_pred hHHHHhc-hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHH
Q 007913 147 FLRVELG-DFVAYIAAGNILLEAV-VGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIA 224 (585)
Q Consensus 147 ~~~~~~g-~~~g~~~g~~~~l~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (585)
|+++.+| |+.|.+.+....+++- ......+.+.++.+...++ .+ ....++++.++..++.
T Consensus 137 Yi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~-~~-----------------~~~~gi~la~l~~~VI 198 (452)
T COG1115 137 YIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFG-IP-----------------PLVTGIVLALLVALVI 198 (452)
T ss_pred HHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcC-Cc-----------------HHHHHHHHHHHHHHHH
Confidence 9999998 4556666655555555 4667777777777777776 21 2377788888888888
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHhheecccCCCC---------CCCCCc----Chh------HHHHHHHHHHHHh-
Q 007913 225 MSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNL---------DPFLPY----GTE------GVFEAAAVVYWSY- 284 (585)
Q Consensus 225 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------~~~~~~----g~~------~~~~~~~~~~~~~- 284 (585)
.-|+|..+++......+.-+.-++..+..+.. +.++. +.|.+. |.. .+..|+.-..|+-
T Consensus 199 ~GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~-n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNE 277 (452)
T COG1115 199 FGGIKRIAKVSSKVVPFMAILYVLVALVIIVL-NISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNE 277 (452)
T ss_pred HcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhccc
Confidence 99999999999888877665544433332221 11110 122222 111 2333444445655
Q ss_pred --hcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccc--cccHH-HHHHHHhCcHHHHHHHHH
Q 007913 285 --TGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEID--MNAAY-SIAFRQIGMNWAKYLVSV 359 (585)
Q Consensus 285 --~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~ 359 (585)
.|....++.+.+++||.|.--..+....+-+.++...+.+.+.....++..+ +...+ ..+++..-++++..++.+
T Consensus 278 AGmGsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~~fv~i 357 (452)
T COG1115 278 AGMGSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGSYFVAI 357 (452)
T ss_pred ccCCcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHHHHHHH
Confidence 5677777888889999877655555544445566666666655544333222 22233 346667777899999999
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHH
Q 007913 360 CALKGMTTSLLVGSLGQARYTTQIA 384 (585)
Q Consensus 360 ~~~~~~~~~~~~~~~~~sR~l~~~a 384 (585)
...+-.+++.+++.+..-|.+.-+.
T Consensus 358 ~l~lFafTTIlg~yyyge~~~~fl~ 382 (452)
T COG1115 358 ALFLFAFTTILGWYYYGEKNIEFLF 382 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999888888776544
No 58
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.25 E-value=5.8e-09 Score=105.51 Aligned_cols=345 Identities=12% Similarity=0.102 Sum_probs=198.3
Q ss_pred cccChhHHHHHhhcccccccchhccHHhHhhccChh--HHHHHHHHHHHHHH---HHHHHHHhhhhccCC----------
Q 007913 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA--IVLSYLASGLSALL---SAFCYTEFAVEIPVA---------- 141 (585)
Q Consensus 77 r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~--~~~~~ll~~~~~~~---~a~~~~el~s~~P~~---------- 141 (585)
.-.+..+.+.--+-+++|+|++..|... .. +|.. .+...+++.+...+ ..-+.-+++++.-++
T Consensus 45 ~~~s~~~tl~hl~k~~iGtG~l~lP~AF-k~-sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~ 122 (449)
T KOG1304|consen 45 HPTSATQTLIHLLKGSIGTGILSLPLAF-KN-SGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAES 122 (449)
T ss_pred CCCchHHHHHHHHHhhhccccccChHHH-Hh-cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHH
Confidence 3467777777788888999999888765 33 6653 33344444444443 344556666664211
Q ss_pred --CchhHhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHH
Q 007913 142 --GGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLV 219 (585)
Q Consensus 142 --Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (585)
-+.+.| .|.+||...+++-....+.+...+..+....++-+....+......+.. .....+.+..
T Consensus 123 a~~~~~~~-~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~------------~~~i~~~~~~ 189 (449)
T KOG1304|consen 123 AMEGGPGW-LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSV------------RLYILIQLPP 189 (449)
T ss_pred HHcCCcHH-HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccH------------HHHHHHHHHH
Confidence 122235 6789999999999999999999999999999999988887222222211 1333333333
Q ss_pred HHHHH-hhhhhhhhHHHHHHHHHHHHHHHHHHHhheeccc-CCCCCCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhh
Q 007913 220 CNGIA-MSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGK-TTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEET 297 (585)
Q Consensus 220 ~~~i~-~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~ 297 (585)
...+| .+..|..+-+..+.-++.++.++++....+.... .++...+ .++.++...+..++|+|-|.-.+..+=+++
T Consensus 190 ~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~--~~~~~~~lf~GtaifafEGig~VLPlEn~M 267 (449)
T KOG1304|consen 190 LLLLNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAV--TGWSGLPLFFGTAIFAFEGIGMVLPLENSM 267 (449)
T ss_pred HHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccc--cchhhhHHHHHHHHHHhccceEEEehhhcc
Confidence 33333 3455555555555555555555444443333222 1122222 236778888889999999999999999999
Q ss_pred cCCCCChh---hHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhh
Q 007913 298 KKPSRDIP---IGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSL 374 (585)
Q Consensus 298 k~p~r~~p---~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (585)
|+|+ ++| ..+-.++.+++++|....+.-+...+++..++-. -+....+....+.+...++.+-+.--.++
T Consensus 268 k~P~-~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sIT------LNLP~~~l~~~Vkl~~ai~I~ls~pLQ~y 340 (449)
T KOG1304|consen 268 KKPQ-KFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSIT------LNLPQEILSQTVKLLLAIAIFLTYPLQFY 340 (449)
T ss_pred cChh-hcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEE------ecCCccHHHHHHHHHHHHHHHHcCchhhh
Confidence 9994 677 9999999999999999988877666655433100 01112233333344444444444334445
Q ss_pred hhhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHhc
Q 007913 375 GQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIAL-FSSLNILSSVFSFSTL--SIFMLMAIALLVRRYY 451 (585)
Q Consensus 375 ~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~-~~~~~~l~~~~~~~~~--~~~~~~~~~~l~~r~~ 451 (585)
..-++++.- +.+++++ ++++=.+..-=....+++..++. +++++.++++.+.... +.+++..+--+...+.
T Consensus 341 v~~eIi~~~-----i~~k~~~-~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~ 414 (449)
T KOG1304|consen 341 VPIEIIEPG-----IRKKFSE-NRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYP 414 (449)
T ss_pred hhHHHHHHh-----HHHhcCc-chhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcc
Confidence 555555432 2233331 10000111111111222222222 4788888888886554 4444444444444433
No 59
>PRK11375 allantoin permease; Provisional
Probab=99.18 E-value=2.7e-07 Score=97.73 Aligned_cols=330 Identities=13% Similarity=0.033 Sum_probs=158.0
Q ss_pred CccccccChhHHHHHhhcccccccchhccHHhHhhccCh-hHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHH
Q 007913 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGP-AIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (585)
Q Consensus 73 ~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~ 151 (585)
++.+|+-++++.+.+=++..+..+.+...+......-+. .++++.+++.++........+..+.++-. +.....+..
T Consensus 21 p~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl--~~~v~sR~s 98 (484)
T PRK11375 21 TQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYGV--PFAMILRAS 98 (484)
T ss_pred CccccCCcHHHHHHHHHHHhccHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHhcccccccCC--ChhHhHHHH
Confidence 444688999998888777665544442333333221122 25555666555555554444444444332 466778889
Q ss_pred hchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccC-CCCCc-chHHHHHHHHHHHHHHhhhh
Q 007913 152 LGDFVAYIAAGNIL-LEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFA-DGFNL-LDPVAVLILLVCNGIAMSGT 228 (585)
Q Consensus 152 ~g~~~g~~~g~~~~-l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~i~~~g~ 228 (585)
||.+.+.+.+.... +..+.-.+......++.+...+....+ .+.......+ ..... ..+..+++.++.+.+...|.
T Consensus 99 FG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~-~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~~~g~ 177 (484)
T PRK11375 99 YGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWP-GFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGFGGG 177 (484)
T ss_pred HccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccccccccccCCCcHHHHHHHHHHHHHHHHHHHcCH
Confidence 99877676666552 344444444444445554443321110 0000000000 00000 11233344455666667899
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhheecccCCCCCCCCCc-------ChhHHHHHHHHHHHHhh-cHhHHhhhhhhhcCC
Q 007913 229 RRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPY-------GTEGVFEAAAVVYWSYT-GFDMVATMAEETKKP 300 (585)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~-G~e~~~~~~~E~k~p 300 (585)
|...+++.+...+.++..+.+.+..+...+.+......+. ....+..++...+=++. +.-..+.++...|++
T Consensus 178 ~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~ 257 (484)
T PRK11375 178 KVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAHSF 257 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcccCCh
Confidence 9999999888887766555544443333322211111111 12334444433222232 334566778888887
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHH-HhcccccccccccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-HhhhhhhH
Q 007913 301 SRDIPIGLVGSMCMITAVYCLMALAL-TMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLL-VGSLGQAR 378 (585)
Q Consensus 301 ~r~~p~ai~~~~~~~~~~y~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sR 378 (585)
+ +.-++...+..+...+.....+.. ............+|. ++....+......+..+..+++..++.. ..+++.+-
T Consensus 258 ~-~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~-~i~~~~~~~~~~~~a~l~~v~a~~~tN~~~N~ys~~~ 335 (484)
T PRK11375 258 R-AQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVL-DIVQRWDSLFASFFAVLVILMTTISTNATGNIIPAGY 335 (484)
T ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHH-HHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccHHH
Confidence 4 445666666555544432222221 111111001123343 3333334344444455555666665543 34444433
Q ss_pred HHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH
Q 007913 379 YTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF 420 (585)
Q Consensus 379 ~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~ 420 (585)
- -.+.+||+. |.| ++.++.++++.++...
T Consensus 336 ~-----l~~l~pk~i---~~~-----~~~~i~~iig~~~~pw 364 (484)
T PRK11375 336 Q-----IAALAPTKL---TYK-----NGVLIASIISLLICPW 364 (484)
T ss_pred H-----HHHhCcCcc---chh-----hHHHHHHHHHHHhccH
Confidence 3 345667543 212 3555666666555544
No 60
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=99.10 E-value=1.8e-10 Score=79.37 Aligned_cols=51 Identities=43% Similarity=0.785 Sum_probs=49.4
Q ss_pred CcccccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhcccc
Q 007913 518 WGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFIICSAVMLVYYLLVGLHAT 568 (585)
Q Consensus 518 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~ 568 (585)
||+|.+|++|+++++.|++++.+++..+|..+++|+++|++.|+.||+||+
T Consensus 1 F~vP~vP~~P~~si~~ni~Lm~~L~~~twirf~iWl~iGl~iYf~YG~~hS 51 (51)
T PF13906_consen 1 FKVPLVPFLPALSILINIYLMAQLSALTWIRFGIWLAIGLVIYFGYGIRHS 51 (51)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHheeeecC
Confidence 688999999999999999999999999999999999999999999999986
No 61
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=99.03 E-value=2e-06 Score=82.63 Aligned_cols=264 Identities=14% Similarity=0.071 Sum_probs=163.4
Q ss_pred HHhhcccccccchhccHHhHhhccChh---HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHHHHHH
Q 007913 86 WLCFGSVVGSGIFVITGQEAKKHAGPA---IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAG 162 (585)
Q Consensus 86 ~i~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~ 162 (585)
+..++.++|+|. .+-..+.+ .-|+- +.++.++++++....+....|+++++. +...-++.++.+||.++-+.-.
T Consensus 10 f~~ig~~vGAGf-AsGqEi~Q-FF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~-a~~y~~~~~~v~~~~~~ki~d~ 86 (349)
T COG3949 10 FAFIGTVVGAGF-ASGQEIMQ-FFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFN-ATSYREILKYVSGPKFAKIIDI 86 (349)
T ss_pred HHHHHHhhcccc-cchHHHHH-HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHhhHHHHHHHHH
Confidence 445567889884 33334443 35543 889999999999999999999999887 4567889999999999887755
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHH
Q 007913 163 NILLEAVVGAAGLARS-WSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSG-TRRSSWLNWISSI 240 (585)
Q Consensus 163 ~~~l~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g-~~~~~~~~~~~~~ 240 (585)
...+. .+..+....+ .++.+...++ .+. ++-+++++.+......++ .+..-+++.+.+.
T Consensus 87 ~iif~-lf~~~vVM~AGags~~~e~~~-lP~-----------------wiGali~i~~v~i~lfl~~vegi~tvn~iI~P 147 (349)
T COG3949 87 IIIFF-LFSTAVVMLAGAGSLLEEMFG-LPY-----------------WIGALIIILLVLILLFLGRVEGIITVNGIITP 147 (349)
T ss_pred HHHHH-HHHHHHHHhccchhHHHHHhC-ccH-----------------HHHHHHHHHHHHHHHHHhcccceeeeheeHHH
Confidence 44443 3444444443 4447777666 211 234456666666666666 7777777777776
Q ss_pred HHHHHHHHHHHhheeccc--CCCCCCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHH
Q 007913 241 VSSCVIVFVIIVGFVHGK--TTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAV 318 (585)
Q Consensus 241 ~~~~~~~~~~i~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~ 318 (585)
+.++.+............ ..+...-...+|..-..+ ....-..........+++|+|++ |+.-+|-..+-++.+++
T Consensus 148 ~LIi~l~~v~~~~~f~~~~~~a~~~~~~~~~W~~~~~~-Y~alNi~~~~avLv~lg~~~~~~-~~~~~g~l~gglIlgvl 225 (349)
T COG3949 148 FLIIILVLVTLSFQFTNLGNAAQIVLTKQGNWKASAVG-YGALNILVAVAVLVPLGGRMESR-KVSGIGGLIGGLILGVL 225 (349)
T ss_pred HHHHHHHHHHHHHHHhhccchhhhcCCcCCChHHHHHh-hhhHHHHhHhHhhhhhccccccc-chhhhhhhhhhHHHHHH
Confidence 665553333222211111 111111111223222111 11111223444556777999996 67778888888888888
Q ss_pred HHHHHHHHHhcccccccccccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007913 319 YCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLG 375 (585)
Q Consensus 319 y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (585)
..+.+..+....+ +....+-|..++.++.. +....++.+.......++..+.+++
T Consensus 226 ~~l~nlsLi~~~~-~v~~~dIP~l~i~~~~~-~~i~lvm~vIi~~~IytT~vg~iy~ 280 (349)
T COG3949 226 LFLINLSLIALYD-KVVNYDIPLLTIAKNFS-PLIGLVMSVIIWLEIYTTTVGLIYG 280 (349)
T ss_pred HHHHHHHHHhhcc-hhhccCCcHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887766544 33334558888888777 6666777777777777776665555
No 62
>PRK11017 codB cytosine permease; Provisional
Probab=98.87 E-value=2.7e-05 Score=80.93 Aligned_cols=218 Identities=11% Similarity=0.030 Sum_probs=112.2
Q ss_pred ccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCC-chhHhHHHHhc
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAG-GSFSFLRVELG 153 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~G-g~y~~~~~~~g 153 (585)
+|+ +.++....-.+..+....+..-+.. ...-+.. ++++.+++.++........+-.+ |+.| ......+..||
T Consensus 8 ~r~-~~~~~~~~~~g~~~~~~~~~~g~~l-~~GLs~~~ai~aiilG~~i~~~~~~l~~~~G---~k~G~~~~v~sR~~FG 82 (404)
T PRK11017 8 ARK-GVLSLTMVMLGFTFFSASMWAGGTL-GTGLSFVDFLLAVLIGNLLLGIYTAALGYIG---AKTGLSTHLLARFSFG 82 (404)
T ss_pred Hhc-chHhHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCcCHHHHHHHHhc
Confidence 455 7777655544433322222222222 1112222 56666666555544444444444 4444 45667778999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhH
Q 007913 154 DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (585)
Q Consensus 154 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 233 (585)
.+.+.+.+....+..+.-.+......+..+....+ .+. ....+++.++.......|.|...+
T Consensus 83 ~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~-~~~-----------------~~~~~i~~~l~~~~~~~G~~~i~~ 144 (404)
T PRK11017 83 EKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG-LDI-----------------NLLIVLSGLLMTVTAYFGISALTI 144 (404)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CCH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888887766665555555555555554444443 111 122334445556667789999999
Q ss_pred HHHHHHHHHHHHHHHHHHhheeccc-CCCCCCCCCcChhHHHHHHHHHH-HHhhcHhHHhhhhhhhcCCCCChhhHHHHH
Q 007913 234 LNWISSIVSSCVIVFVIIVGFVHGK-TTNLDPFLPYGTEGVFEAAAVVY-WSYTGFDMVATMAEETKKPSRDIPIGLVGS 311 (585)
Q Consensus 234 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~-~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~ 311 (585)
++++......+.++...+..+...+ .+......+.+...+..++...+ +...+.-..+.++...|++++ .-.+...+
T Consensus 145 ~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~-~~~~~~lg 223 (404)
T PRK11017 145 LSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKI-AVLATMVA 223 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCccc-eeehhHHH
Confidence 9998877666655444332222211 11111111222233444443322 223444566778888888653 33555555
Q ss_pred HHHHHH
Q 007913 312 MCMITA 317 (585)
Q Consensus 312 ~~~~~~ 317 (585)
..+...
T Consensus 224 ~~i~~~ 229 (404)
T PRK11017 224 FFLGNS 229 (404)
T ss_pred HHHHHH
Confidence 444433
No 63
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.87 E-value=2.3e-05 Score=80.21 Aligned_cols=169 Identities=11% Similarity=0.025 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 007913 113 IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNS 192 (585)
Q Consensus 113 ~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~ 192 (585)
++++.+++-++.......+++++.+...+ ...-.+..||.+.+.+.....++.++.-.+......++..... +
T Consensus 54 si~aillG~llG~i~~A~~s~~Ga~~Glp--qmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~---- 126 (442)
T COG1457 54 SLLAILLGNLLGGIFMAYFSYQGARTGLP--QMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-T---- 126 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCC--hheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-C----
Confidence 56666666666666666666665544432 3444566899988888777777766555555544444431111 1
Q ss_pred ccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhheeccc-CCCCCCCCCcChh
Q 007913 193 DLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGK-TTNLDPFLPYGTE 271 (585)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~g~~ 271 (585)
+.+ .....++..++.++..++|.|...+++++.....+...+......+...+ .+....-.|..+.
T Consensus 127 --------~~~-----~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~ 193 (442)
T COG1457 127 --------GLP-----VWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKGPTSPL 193 (442)
T ss_pred --------CCc-----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeccCCCcch
Confidence 011 12444555667788888999999999999998877776655555443121 1111111244455
Q ss_pred HHHHHHHHHHHHhhcH-hHHhhhhhhhcCCC
Q 007913 272 GVFEAAAVVYWSYTGF-DMVATMAEETKKPS 301 (585)
Q Consensus 272 ~~~~~~~~~~~~~~G~-e~~~~~~~E~k~p~ 301 (585)
.+..++..++=.+..+ -.++.++.-.|+|+
T Consensus 194 ~fl~a~slv~g~~~sw~~~~aDysRy~~~~t 224 (442)
T COG1457 194 SFLSALSLVIGSFASWGPYAADYSRYAPSPT 224 (442)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcCCCc
Confidence 5666665554334333 44566666677664
No 64
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=98.75 E-value=9.3e-10 Score=115.43 Aligned_cols=355 Identities=14% Similarity=0.128 Sum_probs=199.1
Q ss_pred cccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhcc---CCCchhHhHHHHh
Q 007913 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIP---VAGGSFSFLRVEL 152 (585)
Q Consensus 77 r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P---~~Gg~y~~~~~~~ 152 (585)
|+-|.++.....+++++|+|++..|.... + +|.. .++..++.++++..+...+.|.....| +.-...+-.++.+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~-~-~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFA-Q-SGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHH-H-hhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 46788999999999999999998887664 3 6764 777788888888899999999988765 3334444457899
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHH-hhhhhhh
Q 007913 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIA-MSGTRRS 231 (585)
Q Consensus 153 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~g~~~~ 231 (585)
||+.+++......+.....+..+....++.+....+...+. . ..+. ....++..++...+. .+..+..
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-~-------~~~~---~~~~~i~~~i~~pls~~~~l~~l 147 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-L-------FISR---YVWIIIFALIVLPLSFLKNLKSL 147 (409)
T ss_pred cccccccccchheeccccccceeEEEeeeeeeccccccccc-c-------cccc---cccccccccccccccccchhhHH
Confidence 99999988887777777766666666677666665521110 0 0000 011111111111222 1223333
Q ss_pred hHHHHHHHHHHHHHHHHHHHhheec--ccCCCCC---CCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCC--Ch
Q 007913 232 SWLNWISSIVSSCVIVFVIIVGFVH--GKTTNLD---PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSR--DI 304 (585)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r--~~ 304 (585)
..+..+.....+..+.+........ .+..+.. .+....+.++..++....|+|.+......+.+|+|+|+| +.
T Consensus 148 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~ 227 (409)
T PF01490_consen 148 RYLSILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKM 227 (409)
T ss_pred HHHhhhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCcccccc
Confidence 3332222222211111111111111 1111111 112234568899999999999999999999999999864 45
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 007913 305 PIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMN-WAKYLVSVCALKGMTTSLLVGSLGQARYTTQI 383 (585)
Q Consensus 305 p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ 383 (585)
.|+...+..+++++|.+..+......+++..+ .+..+.... +...+..+...+..+.+..-..+...+.+...
T Consensus 228 ~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~------~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~ 301 (409)
T PF01490_consen 228 KKVLSISMIICFIIYLLFGIFGYLAFGDSVQG------NILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENL 301 (409)
T ss_pred ceeeeehhhhhhHHhhhhhhcccceeeeeecc------hhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhh
Confidence 59999999999999999998876665543211 222222221 23333344444444444333444444444443
Q ss_pred HhcC-----CCchhhhccCCCCCchHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccC
Q 007913 384 ARAH-----MIPPWFALVHPKTQTPINATLLVTTLSAII-ALFSSLNILSSVFSFS--TLSIFMLMAIALLVRRYYEK 453 (585)
Q Consensus 384 ardg-----~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~-~~~~~~~~l~~~~~~~--~~~~~~~~~~~~l~~r~~~~ 453 (585)
-+.. ..++.- +.++..+.-.+.. ..+++.++ ....+++.+.++.+.. ..+.|.+.++.+++.+++++
T Consensus 302 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~ 376 (409)
T PF01490_consen 302 LFKRAASSRDSPKNT-PSSRWLRYLIRII--LVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKR 376 (409)
T ss_pred eeccccccccccccc-cccceeeeeeecc--hhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccc
Confidence 3221 111000 0000001111111 11122222 3336788888877643 36788888888887776654
No 65
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=98.66 E-value=0.00023 Score=73.05 Aligned_cols=328 Identities=12% Similarity=0.086 Sum_probs=170.9
Q ss_pred CCccccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHH
Q 007913 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (585)
Q Consensus 72 ~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 150 (585)
.++.+|+.++++.+.+=.+.+.-.+-+...+...+...++. .+++.+++-++....+..-+..++++-. ..-...+.
T Consensus 34 ~~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gI--pFpv~~Ra 111 (497)
T COG1953 34 TPAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGI--PFPVLSRA 111 (497)
T ss_pred CccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCC--CchHHHHH
Confidence 34557999999999987777665555555555555433444 7777777777666666555555554432 23455677
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhccc--ccCCCCCcchHHHH-HHHHHHHHHHhhh
Q 007913 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVD--CFADGFNLLDPVAV-LILLVCNGIAMSG 227 (585)
Q Consensus 151 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~~~g 227 (585)
.||-+.+-+-..+-.+.-++--...+...+..++.++....+. +....+ ....... ...++. ++-++...+...|
T Consensus 112 SFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~-~~~~~~~~~~lg~tt-~~~i~F~ifW~l~~l~~~~g 189 (497)
T COG1953 112 SFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPS-LLIPNTLSPLLGLTT-LELICFFIFWVLQLLVLFKG 189 (497)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccc-cccCCccccccCCcH-HHHHHHHHHHHHHHHHHhcC
Confidence 8887666655555555445545555555555555555422111 211110 0111111 123333 3334445555679
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhheecccCCCCCCCCC----cC---hhHHHHHHHHHH-HHhhcHhHHhhhhhhhcC
Q 007913 228 TRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLP----YG---TEGVFEAAAVVY-WSYTGFDMVATMAEETKK 299 (585)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~g---~~~~~~~~~~~~-~~~~G~e~~~~~~~E~k~ 299 (585)
.+...|++.+...+..+..+.+.+....+.+..+.....| .+ +..++.++.... +-=+..-..+..+.+.|+
T Consensus 190 ~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DFsRfa~s 269 (497)
T COG1953 190 MESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDFTRFAKS 269 (497)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchhhcccCC
Confidence 9999999999999988888888887776655432221111 11 112222221111 111333445677777787
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHhccccccccc--ccHHHHHHHHhCcHHHHH-HHHHHHHHHHHHHHHHhhhhh
Q 007913 300 PSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM--NAAYSIAFRQIGMNWAKY-LVSVCALKGMTTSLLVGSLGQ 376 (585)
Q Consensus 300 p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 376 (585)
| |+.-++-++++-+...+.-+..+......- ..... -+| .++........... +..+..++++++...+.-..+
T Consensus 270 ~-~~~~~gq~~gLPv~~~l~~ligvv~tsa~~-~lyG~~~w~P-~di~~~~~~~~~~~fl~~l~~~iati~~Ni~aN~vs 346 (497)
T COG1953 270 Q-KAQIWGQLVGLPVNFALFSLIGVVVTSASY-ILYGETIWDP-LDIVARFLSGFYAAFLAGLTFAVATISTNIAANIVS 346 (497)
T ss_pred h-hhhhhccchhhhHHHHHHHHHHhhHHHHHH-HhhCcccCCH-HHHHHHhccchHHHHHHHHHHHHHHHhhhHHhccCC
Confidence 6 444556555555555555444444322110 00011 123 34455554443443 555666666666554433333
Q ss_pred hHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHH
Q 007913 377 ARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIA 418 (585)
Q Consensus 377 sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~ 418 (585)
+-.=. .+.+||.... | ++-+++++++.+++
T Consensus 347 p~~D~----s~l~Pk~in~---k-----rg~liaA~ial~~~ 376 (497)
T COG1953 347 PGYDL----SALFPKYINI---K-----RGGLIAAIIALLIC 376 (497)
T ss_pred hHHHH----HHhcccccch---h-----hhHHHHHHHHHHHc
Confidence 32211 1466776652 2 23455555554443
No 66
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.61 E-value=0.0014 Score=70.05 Aligned_cols=283 Identities=12% Similarity=0.068 Sum_probs=149.0
Q ss_pred ccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHH---HHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHH
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSY---LASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~---ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~ 151 (585)
.|+++++-...-..++.++.+.+......... .|.. .+.+. ....+.....+.-+.++.++. +.-..++|.++.
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~l~~R 117 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYK-YGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY-NAVTLNDMLRAR 117 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
Confidence 58888887777666766665555444333333 4433 11111 111112222333445555554 344789999999
Q ss_pred hchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhh
Q 007913 152 LGDF-VAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (585)
Q Consensus 152 ~g~~-~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (585)
||+. .....+....+..+...+....+.+..++..++ .+.. ..+.+..++...+...-|.|.
T Consensus 118 yg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g-i~~~----------------~~iii~~~iv~iYt~~GGl~a 180 (483)
T PRK09442 118 YQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG-ISYE----------------TGLLIFGITVALYTAFGGFRA 180 (483)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHH----------------HHHHHHHHHHHHHHHhccHHH
Confidence 9964 466666666665566667777777777777766 2210 012222223344555568887
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhheecc-------------cCCCCCCCCCcChh--HHHHH-HHHHHHHhhcHhHHhhhh
Q 007913 231 SSWLNWISSIVSSCVIVFVIIVGFVHG-------------KTTNLDPFLPYGTE--GVFEA-AAVVYWSYTGFDMVATMA 294 (585)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-------------~~~~~~~~~~~g~~--~~~~~-~~~~~~~~~G~e~~~~~~ 294 (585)
..+.+.+-.++.++..+++.+..+... +++.+.+..+.++. ..... .....+...+.....+-.
T Consensus 181 v~~TD~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~ 260 (483)
T PRK09442 181 VVLTDALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLPHTAVRC 260 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 777776666655554443332222110 01111111111111 11111 111222333433333444
Q ss_pred hhhcCCCCChhhHHHHHHHHHHHHHHHHHHHH---HhcccccccccccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Q 007913 295 EETKKPSRDIPIGLVGSMCMITAVYCLMALAL---TMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLV 371 (585)
Q Consensus 295 ~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (585)
=..||+ |+..|+..++......+++...+.- ....|. ..+++..++....+..++++..++.++.+.+.+++..+
T Consensus 261 ~aaks~-~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~-~~~~~~~~p~l~~~~lp~~l~gl~~a~~~aA~mST~~s 338 (483)
T PRK09442 261 MSYKDS-KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPD-LTVPDKVIPTLMLKVLPPFAAGIFLAAPMAAIMSTVDS 338 (483)
T ss_pred HHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccchHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 446776 6778888887666555554433321 112232 12344566666777777888888888888888888777
Q ss_pred hhhhhhHH
Q 007913 372 GSLGQARY 379 (585)
Q Consensus 372 ~~~~~sR~ 379 (585)
.+.+.+-.
T Consensus 339 ~l~~~ss~ 346 (483)
T PRK09442 339 QLLQSSST 346 (483)
T ss_pred HHHHHHHH
Confidence 77666553
No 67
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.55 E-value=0.00049 Score=72.67 Aligned_cols=244 Identities=11% Similarity=0.054 Sum_probs=123.8
Q ss_pred CccccccChhHHHHHhhcccccccchhccHHhHhhccCh-hHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHH
Q 007913 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGP-AIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (585)
Q Consensus 73 ~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~ 151 (585)
++.+|+.++++.+.+=++..+...-+..-+......-+. .++++.+++.++........+..+.++-. ......|..
T Consensus 8 p~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl--~~~v~sR~~ 85 (442)
T TIGR00800 8 KEEERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGL--PFPVLSRAS 85 (442)
T ss_pred CcccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCC--Ccchhhhhh
Confidence 444677889998888776665433333322222110122 25666666666555555555555554443 356778889
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHH--HHHhhhhh
Q 007913 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCN--GIAMSGTR 229 (585)
Q Consensus 152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~g~~ 229 (585)
||.+.+.+.+....+..+.-.+..+...++.+...++...+.... .+.+......+..++..... +....|.|
T Consensus 86 FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~-----~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~ 160 (442)
T TIGR00800 86 FGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLH-----LGNGMTTLELICFIIFWALVLVFLFFFGYK 160 (442)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccc-----cCCcccHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 999988888888887777777777777777766665521110000 00000001123322322222 23455666
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhheecccCCCCC-C----CCCcChhHHHHHHHHHH-HHhhcHhHHhhhhhhhcCCCCC
Q 007913 230 RSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLD-P----FLPYGTEGVFEAAAVVY-WSYTGFDMVATMAEETKKPSRD 303 (585)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~----~~~~g~~~~~~~~~~~~-~~~~G~e~~~~~~~E~k~p~r~ 303 (585)
...+.+.......++.++.++.......+..+.. . -.+.....++.++...+ +...+....+.++...|+++ +
T Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~-~ 239 (442)
T TIGR00800 161 IRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKK-T 239 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCcc-c
Confidence 6666666555544444433332211111111111 1 11222344554444432 22234456778888888864 4
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 007913 304 IPIGLVGSMCMITAVYCLMAL 324 (585)
Q Consensus 304 ~p~ai~~~~~~~~~~y~l~~~ 324 (585)
..++...+.....+...+...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~g~ 260 (442)
T TIGR00800 240 AIWGQFLALPGGFTLTCFFGI 260 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 456666555555444444333
No 68
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.46 E-value=0.00062 Score=71.21 Aligned_cols=285 Identities=12% Similarity=0.035 Sum_probs=154.3
Q ss_pred ccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhch-
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGD- 154 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~- 154 (585)
.|+++++....-..++.++.+.+......... .|...++..+...+.....+..+.+.-++.+ .-..++|.++.||+
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~e~l~~Ryg~~ 79 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYA-YGFAIGFYELGALVLLIILGWLFVPIFINNG-AYTMPEYLEKRFGKR 79 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHhCch
Confidence 47888888877777777765555444433333 4533333223333344556666666655544 45789999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHH
Q 007913 155 FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWL 234 (585)
Q Consensus 155 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 234 (585)
....+.+....+..+...+....+.+..++..++ .+.. ..+.+...+.......-|.|...+.
T Consensus 80 ~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g-i~~~----------------~~~ii~~~i~~~Yt~~GG~~av~~T 142 (407)
T TIGR00813 80 ILRGLSVLSLILYIFLYMSVDLFSGALLIELITG-LDLY----------------LSLLLLGAITILYTVFGGLKAVVWT 142 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHH----------------HHHHHHHHHHHHHHHHcchHHHHHH
Confidence 5667777777777778888888888888888776 3210 1122222333344555688877777
Q ss_pred HHHHHHHHHHHHHHHHHhheeccc-------------C------CCCCC-CCCcC-hhHH---HHHHHHHHHHhhcHhHH
Q 007913 235 NWISSIVSSCVIVFVIIVGFVHGK-------------T------TNLDP-FLPYG-TEGV---FEAAAVVYWSYTGFDMV 290 (585)
Q Consensus 235 ~~~~~~~~~~~~~~~~i~~~~~~~-------------~------~~~~~-~~~~g-~~~~---~~~~~~~~~~~~G~e~~ 290 (585)
+.+-..+.++..+++.+..+.+.+ + +++.. ..+.. ...+ ..+.......+..-...
T Consensus 143 d~iQ~~i~~~~~i~~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 222 (407)
T TIGR00813 143 DTIQAVIMILGTFILPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWYWTNQVI 222 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHHHhcCHHH
Confidence 766666555443333332221110 0 00000 00000 0011 01111110111110111
Q ss_pred hhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHH-H--Hhccc----ccc----cccccHHHHHHHHhCcHHHHHHHHH
Q 007913 291 ATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALA-L--TMMVK----YTE----IDMNAAYSIAFRQIGMNWAKYLVSV 359 (585)
Q Consensus 291 ~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~-~--~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (585)
.+-.=-.||+ |+..|+...+.....+.+.+..+. + ....+ ..+ .+++..+.....+..+++..-++.+
T Consensus 223 ~qR~~a~ks~-~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~l~gl~~a 301 (407)
T TIGR00813 223 VQRCLAAKSA-KHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPGLAGLFLA 301 (407)
T ss_pred hhHHHhcCCH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcchHHHHHH
Confidence 2222335664 678888888876665555443322 1 11222 111 1344566666777777888888888
Q ss_pred HHHHHHHHHHHHhhhhhhHHH
Q 007913 360 CALKGMTTSLLVGSLGQARYT 380 (585)
Q Consensus 360 ~~~~~~~~~~~~~~~~~sR~l 380 (585)
+.+.+.+++..+.+.+.+-.+
T Consensus 302 gilaA~mST~~s~l~a~ss~~ 322 (407)
T TIGR00813 302 AILAAVMSTLSSQLNSASTVF 322 (407)
T ss_pred HHHHHHHHhhhhhHHHHHHHH
Confidence 888888888887777776653
No 69
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=98.36 E-value=0.0023 Score=65.15 Aligned_cols=288 Identities=15% Similarity=0.052 Sum_probs=142.9
Q ss_pred hhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhcc-CCCchhHhHHHHhchhHHHH
Q 007913 81 WWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIP-VAGGSFSFLRVELGDFVAYI 159 (585)
Q Consensus 81 ~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P-~~Gg~y~~~~~~~g~~~g~~ 159 (585)
....+.-+.|+.+|.|-.-..++.+.+.+|.+-++-|++ .++..-.-...+|++---- +.+..-.|- +..++.....
T Consensus 11 rlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli-~~l~~GiPlli~Ef~iGr~~~~~~~~a~~-~l~~~~~~~~ 88 (439)
T COG0733 11 RLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLI-FLLLVGIPLLLAEFAIGRRGRKNAVGAFR-KLAPKKKWEW 88 (439)
T ss_pred HHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHH-HHHHHhHHHHHHHHHhhhhcCCChhHHHH-HhccCccchh
Confidence 344445577888999988888888777566553333333 2233333344556543111 222222222 2222233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccC--CccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhh-hh
Q 007913 160 AAGNILLEAVVGAAGLARSWSSYLASMID----SNN--SDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR-SS 232 (585)
Q Consensus 160 ~g~~~~l~~~~~~a~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~ 232 (585)
.||.-.+........++...+=.+.+... ... .............+.......-.++.++..++..+|++. ..
T Consensus 89 ~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~~GIE 168 (439)
T COG0733 89 IGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVKKGIE 168 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHHhhHH
Confidence 44544444444444444333322222221 111 111111011111112112233355566667777789887 78
Q ss_pred HHHHHHHHHHHHHHHHHHHhheeccc---------CCCCCCCCCcChhHHHHHHHHHHHHh-hcHhHHhhhhhhhcCCCC
Q 007913 233 WLNWISSIVSSCVIVFVIIVGFVHGK---------TTNLDPFLPYGTEGVFEAAAVVYWSY-TGFDMVATMAEETKKPSR 302 (585)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~~g~~~~~~~~~~~~~~~-~G~e~~~~~~~E~k~p~r 302 (585)
|.++++.....+.++++.+-.+.... ..+++...+ ...+..+...++|+. .|+.....++.-.++ +.
T Consensus 169 k~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~--~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k-~~ 245 (439)
T COG0733 169 KANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTD--PKVWLAALGQAFFSLSLGFGIMITYSSYLSK-KS 245 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCc--hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCc-cc
Confidence 88898888777776666655443211 011222221 344667777787877 677766667666654 67
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHh---cccccccccc----cHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHhh
Q 007913 303 DIPIGLVGSMCMITAVYCLMALALTM---MVKYTEIDMN----AAYSIAFRQIG-MNWAKYLVSVCALKGMTTSLLVGS 373 (585)
Q Consensus 303 ~~p~ai~~~~~~~~~~y~l~~~~~~~---~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 373 (585)
|+++.-......-..+-++..+.+.. ....+.-+.. ..++.++.+.+ +.....++.....++.++|..+.+
T Consensus 246 ~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~iSml 324 (439)
T COG0733 246 DLVSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAISML 324 (439)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777776666665555544322 2222211111 24667777665 223334444444455555544433
No 70
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.36 E-value=0.0051 Score=63.60 Aligned_cols=198 Identities=15% Similarity=0.123 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 007913 113 IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNS 192 (585)
Q Consensus 113 ~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~ 192 (585)
++++.+++.++........+..+.++.. ......|..||++.+.+......+..+.-.+......++.++...+...+
T Consensus 31 ai~aiilG~~i~~~~~~l~~~~G~~~Gl--~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~ 108 (386)
T TIGR02358 31 GLLAILLGHLVGVLLLSAAGVIGADTGL--SAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFG 108 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCc--CHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5666666665555544455554444332 46777888999999988888888888877788887788888777651101
Q ss_pred ccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhheecccCCCCCCCCCcChhH
Q 007913 193 DLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEG 272 (585)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~ 272 (585)
. .. ......++.++.......|.|...+++++...+..+..+........+.+.... +.+.+..+
T Consensus 109 ~-----------~~--~~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~s 173 (386)
T TIGR02358 109 E-----------ES--PMLWILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSEL--WNRAGDMS 173 (386)
T ss_pred C-----------Cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh--cCCCCCcc
Confidence 0 00 112223333456666778999999999999887777665555433333322111 11111122
Q ss_pred HHHHHHHHHHH-hhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 007913 273 VFEAAAVVYWS-YTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTM 328 (585)
Q Consensus 273 ~~~~~~~~~~~-~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~ 328 (585)
+..++....-. ..+.-..++++...|+|+ +.-++...+..+...+..+.......
T Consensus 174 ~~~~~~~~~~~~~swa~~~~DysRy~k~~~-~~~~~~~~G~~i~~~~~~~~G~~~~~ 229 (386)
T TIGR02358 174 FAVAVELVIAMPLSWLPLIADYTRFARNPR-HVFLGTVLGYFIGSCWMYFLGLAVTL 229 (386)
T ss_pred HHHHHHHHHHHHHHHHHHccchhhhcCCCc-ceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222111 122233677778888764 45577777666666655555554443
No 71
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.36 E-value=0.0033 Score=64.68 Aligned_cols=313 Identities=14% Similarity=0.143 Sum_probs=167.2
Q ss_pred ccccccchhccHHhHhhccChh---HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHHHHHHHHHHH
Q 007913 91 SVVGSGIFVITGQEAKKHAGPA---IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLE 167 (585)
Q Consensus 91 ~~ig~gi~~~~~~~~~~~~G~~---~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l~ 167 (585)
.-.|+|-...|...-.. +|.. +.+++++.++..=..+..- .-+.||.+.=..+..||..|.+......+.
T Consensus 15 mFFGAGNLIFPp~lG~~-aG~~~~~a~~GF~lTgV~lP~Lgvia------~~~~~~~~~~l~~~v~~~f~~if~~~i~l~ 87 (427)
T PF05525_consen 15 MFFGAGNLIFPPFLGQQ-AGSNWWPAMIGFLLTGVGLPLLGVIA------VAKSGGGIEDLASRVGPKFALIFTILIYLS 87 (427)
T ss_pred HHhCCccccchHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHH------HhhcCCCHHHHhcccCcHHHHHHHHHHHHH
Confidence 33688888888877655 7753 5666777665543333221 122354555555667777776665332221
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCccchhcccccC-CCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 007913 168 AVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFA-DGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVI 246 (585)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~ 246 (585)
--. .-...+..+........ |..+ ++.....+..+++..+..++.+...|...++-++++.+.++.+
T Consensus 88 IGP-~~aiPRtaa~sfe~~i~-----------p~~~~~~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~~l 155 (427)
T PF05525_consen 88 IGP-LFAIPRTAAVSFEMGIA-----------PFFPENSNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLILL 155 (427)
T ss_pred HHh-cccCcchhhhhHHHhhh-----------ccCCcccccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Confidence 100 00111111111111110 1111 1112234677788888889999999999999999999999999
Q ss_pred HHHHHhheecccCCCCCC---CCCcCh-hHHHHH----HHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHH---
Q 007913 247 VFVIIVGFVHGKTTNLDP---FLPYGT-EGVFEA----AAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMI--- 315 (585)
Q Consensus 247 ~~~~i~~~~~~~~~~~~~---~~~~g~-~~~~~~----~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~--- 315 (585)
+++++.++.+...+...+ +..+.+ .|+..| =..+...|...-..+--....||+ |+..|.+..+-++.
T Consensus 156 ~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iIi~~i~~~g~~~~-k~~~~~~~~ag~ia~~l 234 (427)
T PF05525_consen 156 AILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIIIINAIRQKGYKDK-KEIKKYTIKAGLIAGIL 234 (427)
T ss_pred HHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHH
Confidence 999988887643221111 111111 122211 122223333332222223334443 44455554444444
Q ss_pred -HHHHHHHHHHHHhcccc--cccccccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCchh
Q 007913 316 -TAVYCLMALALTMMVKY--TEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPW 392 (585)
Q Consensus 316 -~~~y~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~~ 392 (585)
.++|......-....+. ++.+..+-+..+.++..|+.+..++.+...++++++..+-..+.+....
T Consensus 235 L~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~----------- 303 (427)
T PF05525_consen 235 LALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFS----------- 303 (427)
T ss_pred HHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 34444444332222111 1122234566777777889999999999999999999998888887655
Q ss_pred hhccCCCCCchHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 007913 393 FALVHPKTQTPINAT-LLVTTLSAIIALFSSLNILSSVFSFSTLSIFM 439 (585)
Q Consensus 393 ~~~~~~~~~~P~~ai-~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~ 439 (585)
+..| +.+++.. ++.++++.++..++ ++.++++..-...+.|=
T Consensus 304 --~~~~--kisY~~~v~i~~i~S~~ian~G-l~~Ii~~s~PiL~~iYP 346 (427)
T PF05525_consen 304 --ELFP--KISYKVWVIIFTIFSFIIANLG-LDQIIKISVPILMFIYP 346 (427)
T ss_pred --HHhc--ccChHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHhH
Confidence 3333 3333322 23345555555553 67777766654444443
No 72
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.36 E-value=0.0067 Score=64.77 Aligned_cols=284 Identities=10% Similarity=0.003 Sum_probs=148.8
Q ss_pred ccccChhHHHHHhhcccccccchhccHHhHhhccChhH-HHHH---HHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHH
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAI-VLSY---LASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~-~~~~---ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~ 151 (585)
.|+++++....-.+++.+|.+.+......... .|... .+.+ ..+.++....+.-+.++.++. +.-..++|.++.
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~T~~e~l~~R 116 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYN-YGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKY-NAITINDVLKAR 116 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
Confidence 58899998888877777776665544433333 34321 1111 111111111233344444444 345789999999
Q ss_pred hchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhh
Q 007913 152 LGDF-VAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (585)
Q Consensus 152 ~g~~-~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (585)
||++ ...+.+....+...........+.+..++..++ .+.. ..+.+..++.......-|.|.
T Consensus 117 yg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g-i~~~----------------~~iii~~~iv~iYt~~GG~~a 179 (471)
T TIGR02119 117 YNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG-LSYL----------------TALFIFSSSVLIYTTFGGFRA 179 (471)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHH----------------HHHHHHHHHHHHHHHhhhHHH
Confidence 9954 456666555555555555666666777777666 2210 112222233444555568888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhheecc-cC------------CCCCCCCCcChh--HHHHHH-HHHHHHhhcHhHHhhhh
Q 007913 231 SSWLNWISSIVSSCVIVFVIIVGFVHG-KT------------TNLDPFLPYGTE--GVFEAA-AVVYWSYTGFDMVATMA 294 (585)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~------------~~~~~~~~~g~~--~~~~~~-~~~~~~~~G~e~~~~~~ 294 (585)
..+.+.+-..+.++..+++.+..+... +. +.+.++.++++. .+.... ....+...+.....+-.
T Consensus 180 v~~td~iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~ 259 (471)
T TIGR02119 180 VALTDAIQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLPQTAVRC 259 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCchHHHHHH
Confidence 888777766666554444433332221 11 111122222211 111111 11122223333334455
Q ss_pred hhhcCCCCChhhHHHHHHHHHHHHHHHHHHHH-Hh-cccccccccccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh
Q 007913 295 EETKKPSRDIPIGLVGSMCMITAVYCLMALAL-TM-MVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVG 372 (585)
Q Consensus 295 ~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (585)
-..||+ |+..|+...+..+...++....+.- .. ...++..+++..++....+..+++...++.++.+.+.+++..+.
T Consensus 260 ~aak~~-~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~mST~~s~ 338 (471)
T TIGR02119 260 MSYKDS-KAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDKVIPLLAIKVLPPILAGIFLAAPMAAIMSTVNSL 338 (471)
T ss_pred HhcCCH-HHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHH
Confidence 566775 6788888888766555544433321 11 11112223455566666666778888888888888888887777
Q ss_pred hhhhhHH
Q 007913 373 SLGQARY 379 (585)
Q Consensus 373 ~~~~sR~ 379 (585)
+.+.+-.
T Consensus 339 l~~~ss~ 345 (471)
T TIGR02119 339 LLQSSST 345 (471)
T ss_pred HHHHHHH
Confidence 7766654
No 73
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.35 E-value=0.0071 Score=64.77 Aligned_cols=283 Identities=12% Similarity=0.080 Sum_probs=135.3
Q ss_pred ccccChhHHHHHhhcccccccchh-ccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhcc----CCCchhHhHHH
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFV-ITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIP----VAGGSFSFLRV 150 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~-~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P----~~Gg~y~~~~~ 150 (585)
.|+++++-...-..++.++...+. .++.... .|....+..+...+..+...+.+++--+++. ..-..++|.++
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~--~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYV--TGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFEN 112 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHH
Confidence 478888876655555555444333 4444432 4543222221111222333344444333222 23357999999
Q ss_pred Hhch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhh
Q 007913 151 ELGD---FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSG 227 (585)
Q Consensus 151 ~~g~---~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 227 (585)
.||+ ....+.+....+......+....+.+..++..++ .+.. ..+.+...+.......-|
T Consensus 113 Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g-i~~~----------------~~iii~~~i~~~Yt~~GG 175 (487)
T TIGR02121 113 RFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG-LDYK----------------TGLLIGALIIVIYTFFGG 175 (487)
T ss_pred HhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHH----------------HHHHHHHHHHHHHHHhhh
Confidence 9994 4444555444444555556666666777777665 2210 112222334445555567
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhheecc-------------cCCCCCCCCCcChhHHHHHHHHHHHHhhcHhHHhhhh
Q 007913 228 TRRSSWLNWISSIVSSCVIVFVIIVGFVHG-------------KTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMA 294 (585)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~ 294 (585)
.|...+.+.+-.++.++..+++.+..+.+. +++..+.+.+..+.++...+.. ...+.|.....+-.
T Consensus 176 l~av~~TD~iQ~~i~~~~~~~v~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~p~~~qR~ 254 (487)
T TIGR02121 176 FLAVSWTDFVQGLLMFFALVLVPIVALFNLGGFGETLSAVAAINPHLLDMFKGASVIAIISLLAW-GLGYFGQPHIIVRF 254 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCccccCCCCCCCHHHHHHHHHH-HHHhccchHHHHHH
Confidence 787777666655555544333332222111 1111111112222222221111 11222322222222
Q ss_pred hhhcCCCCChhhHHHHHHHHHHHHHHHHHHH-HH--hcccc-cc---cccccHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Q 007913 295 EETKKPSRDIPIGLVGSMCMITAVYCLMALA-LT--MMVKY-TE---IDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTT 367 (585)
Q Consensus 295 ~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~-~~--~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (585)
=-.||+ |+..|+...+........+...+. +. ...+. .+ .+++..+....++..+++..-++..+.+.+.++
T Consensus 255 ~aaks~-k~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~p~~~~~~~d~~~~~~~~~~~p~~l~gl~~a~ilaA~mS 333 (487)
T TIGR02121 255 MAIRSH-KELPKARRIGMSWMILSLLGAIAVGLTGIAYFNKNPHVELVDRETIFIVLSQILFHPWIAGILLAAILAAIMS 333 (487)
T ss_pred HhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 334564 577788776654332222111111 11 11111 11 123445566666667788878888888888888
Q ss_pred HHHHhhhhhhHH
Q 007913 368 SLLVGSLGQARY 379 (585)
Q Consensus 368 ~~~~~~~~~sR~ 379 (585)
+..+.+.+.+-.
T Consensus 334 T~~s~l~s~ss~ 345 (487)
T TIGR02121 334 TISSQLLVSSSA 345 (487)
T ss_pred HHHHHHHHHHHH
Confidence 888887777665
No 74
>PRK00701 manganese transport protein MntH; Reviewed
Probab=98.32 E-value=0.0049 Score=64.54 Aligned_cols=68 Identities=12% Similarity=-0.019 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhhhhcc-CCC-chhHhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007913 121 GLSALLSAFCYTEFAVEIP-VAG-GSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMID 188 (585)
Q Consensus 121 ~~~~~~~a~~~~el~s~~P-~~G-g~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~ 188 (585)
-+++.+....+-|++.|.- ..| |..+-+++.+||.+++.......++..........+.+.-++.+++
T Consensus 71 llls~~~~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~g 140 (439)
T PRK00701 71 ILLSNLMAMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFG 140 (439)
T ss_pred HHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444455666777777776 344 7888889999999888776555556555555555555555555444
No 75
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=98.21 E-value=0.0034 Score=64.39 Aligned_cols=244 Identities=15% Similarity=0.137 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHhhhhccC--CCchhHhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcc
Q 007913 122 LSALLSAFCYTEFAVEIPV--AGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKV 199 (585)
Q Consensus 122 ~~~~~~a~~~~el~s~~P~--~Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (585)
+++.+..+.+-|++.|+-. .-+..+-.++.+||.+++.......+...........+.+.-++.+++ .+.
T Consensus 20 ll~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g-~~~------- 91 (358)
T PF01566_consen 20 LLSNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFG-IPL------- 91 (358)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCc-------
Confidence 3445556666777777662 236667778899999999888777777777766666666666665553 221
Q ss_pred cccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhe-ecccCCC-CCCC----CCcChhHH
Q 007913 200 DCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGF-VHGKTTN-LDPF----LPYGTEGV 273 (585)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~-~~~~----~~~g~~~~ 273 (585)
.....+..+....+.+...+...++++++..+..+..+.+++..+ .+.+... ..++ .|. ..++
T Consensus 92 ----------~~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~~~P~~p~-~~~~ 160 (358)
T PF01566_consen 92 ----------WIWVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGLVVPSIPG-PGSL 160 (358)
T ss_pred ----------HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhccCCCCcc-hhHH
Confidence 122223333333333322344556666665555554333333322 2222221 1122 222 1222
Q ss_pred HHHHHHHHHHhhcHhHHhhhh---hhhcCCC---CC-hhhHHHHHHHHHHHHHHHHHHHH----Hhcc-cc-cccccccH
Q 007913 274 FEAAAVVYWSYTGFDMVATMA---EETKKPS---RD-IPIGLVGSMCMITAVYCLMALAL----TMMV-KY-TEIDMNAA 340 (585)
Q Consensus 274 ~~~~~~~~~~~~G~e~~~~~~---~E~k~p~---r~-~p~ai~~~~~~~~~~y~l~~~~~----~~~~-~~-~~~~~~~~ 340 (585)
...+...-.....++...|-+ |+-.+.+ ++ --|....=..+..++..+.+.++ .... +. .+..+.+.
T Consensus 161 ~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~~~~~~~~~~~~ 240 (358)
T PF01566_consen 161 LFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGMIVSFLINVAILIVAAAVLYPGGSEVETAAQ 240 (358)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence 222222222222333222222 1111111 11 01222222222222222222221 1111 11 12233345
Q ss_pred HHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 007913 341 YSIAFRQIGM-NWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIA 384 (585)
Q Consensus 341 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 384 (585)
..+.++..-+ ++...++.++.+.+.+++......+.++.+.+.-
T Consensus 241 ~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~ 285 (358)
T PF01566_consen 241 AAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFL 285 (358)
T ss_pred HHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhh
Confidence 6677776666 7999999999999999999999888888776544
No 76
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=98.16 E-value=0.0089 Score=61.58 Aligned_cols=310 Identities=10% Similarity=0.068 Sum_probs=156.5
Q ss_pred ccccccchhccHHhHhhccChh---HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHHHHHHHHHHH
Q 007913 91 SVVGSGIFVITGQEAKKHAGPA---IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLE 167 (585)
Q Consensus 91 ~~ig~gi~~~~~~~~~~~~G~~---~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l~ 167 (585)
.-.|+|-...|...-.. +|.. +.+++++.++..=..+..- .-++||.+.=..+..||..|.+......+
T Consensus 20 mFFGAGNLIFPp~LG~~-aG~~~~~a~~GF~iT~VglPlLgiia------va~~~g~~~~l~~rv~~~f~~~f~~~i~l- 91 (439)
T PRK15433 20 LFVGAGNIIFPPMVGLQ-AGEHVWTAAFGFLITAVGLPVLTVVA------LAKVGGGVDSLSTPIGKVAGVLLATVCYL- 91 (439)
T ss_pred HHhcCcchhccHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHH------HhhcCCCHHHHhhhcchHHHHHHHHHHHH-
Confidence 33689988888877665 7753 5666666665533332221 11233444444556677776655332221
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCccchhcc-cccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 007913 168 AVVGAAGLARSWSSYLASMIDSNNSDLLRFKV-DCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVI 246 (585)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~ 246 (585)
...+..+ .+......++... |-.+++.....+..+++..+..++.++.-|...++-++++...++.+
T Consensus 92 --~IGP~~a----------iPRtaavsfEm~i~p~~~~~~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l 159 (439)
T PRK15433 92 --AVGPLFA----------TPRTATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIAL 159 (439)
T ss_pred --HHhhccc----------cCCccccchhheeeccCCcccHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHH
Confidence 1111100 0100111122111 11221111223567778888888899999999999999999999999
Q ss_pred HHHHHhheecccCCC--C-CCCCCcCh-hHHHHH----HHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHH----
Q 007913 247 VFVIIVGFVHGKTTN--L-DPFLPYGT-EGVFEA----AAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCM---- 314 (585)
Q Consensus 247 ~~~~i~~~~~~~~~~--~-~~~~~~g~-~~~~~~----~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~---- 314 (585)
+++++.++.+..... . ..+..+.+ .|+..| =..+...|...-.-+--....||+ |++-|.+..+-.+
T Consensus 160 ~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii~~i~~~G~~~~-~~~~k~t~~ag~ia~~~ 238 (439)
T PRK15433 160 VILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEA-RLLTRYTVWAGLMAGVG 238 (439)
T ss_pred HHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHH
Confidence 888888877532211 1 11111101 111111 112222222222222223335554 3444444443333
Q ss_pred HHHHHHHHHHHHHhccc-cccccccc-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCchh
Q 007913 315 ITAVYCLMALALTMMVK-YTEIDMNA-AYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPW 392 (585)
Q Consensus 315 ~~~~y~l~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~~ 392 (585)
-.++|......-....+ .++.++.. -........-++++..++.+....+++++..+...+.++.+..
T Consensus 239 L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~---------- 308 (439)
T PRK15433 239 LTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQ---------- 308 (439)
T ss_pred HHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 34445444443222211 11111222 2233444556689999999999999999999988888876543
Q ss_pred hhccCCCCCchHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 007913 393 FALVHPKTQTPIN-ATLLVTTLSAIIALFSSLNILSSVFSFSTLSIF 438 (585)
Q Consensus 393 ~~~~~~~~~~P~~-ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~ 438 (585)
.- ..|+. ..++.++++.++..++ ++.++++..-...+.|
T Consensus 309 ---~~---~isY~~~v~i~~l~S~~lSn~G-~~~II~~s~PiL~~iY 348 (439)
T PRK15433 309 ---YV---PLSYRTLVFILGGFSMVVSNLG-LSQLIQISVPVLTAIY 348 (439)
T ss_pred ---hc---CCcHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHh
Confidence 21 13333 3334444454444443 5666665554433333
No 77
>PRK10484 putative transporter; Provisional
Probab=98.15 E-value=0.02 Score=61.86 Aligned_cols=291 Identities=11% Similarity=-0.002 Sum_probs=134.5
Q ss_pred ccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHH-HHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhch
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLA-SGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGD 154 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll-~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~ 154 (585)
.|+++++-..+-..++.+++..+......... .|..... |.. ..+...+.++.++.--.+. ..=..++|.++.||+
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~-~G~~~~~-~~~~~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Ryg~ 113 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYA-SGMSVMA-WEVTAAIALIILALIFLPRYLKS-GITTIPDFLEERYDK 113 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHH-hCHHHHH-HHHHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHhcCc
Confidence 58899988776666666665555433333223 4544221 222 2233333444444433333 233678999999998
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHH--HHHHHHHHHhhhhhhh
Q 007913 155 FVAYIAAGNILLEAVVG-AAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVL--ILLVCNGIAMSGTRRS 231 (585)
Q Consensus 155 ~~g~~~g~~~~l~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~g~~~~ 231 (585)
......+....+.+... .+......+..+...+. ... .+ +. +......+... .++.......-|.|..
T Consensus 114 ~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~-~~~-~~-----gi--~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV 184 (523)
T PRK10484 114 TTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFH-VSE-LL-----GI--SYGAAIWLLVWLIGIIGAIYAVFGGLKAV 184 (523)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-chh-hc-----CC--cHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 76666655555444433 22222223333333221 000 00 00 00000011111 1222344445688877
Q ss_pred hHHHHHHHHHHHHHHHHHHHhheecc---------------cCCCCCCCCC----cChhHHHHHHHHHHHHhhc-HhHHh
Q 007913 232 SWLNWISSIVSSCVIVFVIIVGFVHG---------------KTTNLDPFLP----YGTEGVFEAAAVVYWSYTG-FDMVA 291 (585)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~~~~~---------------~~~~~~~~~~----~g~~~~~~~~~~~~~~~~G-~e~~~ 291 (585)
.+.+.+-.++.++..+++.+..+... +++.++.+.+ ..+..++.+.......+.+ -....
T Consensus 185 ~~TD~iQ~vim~i~~iiv~~~~l~~~g~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 264 (523)
T PRK10484 185 AVSDTINGIGLLIGGLLVPVFGLIALGDGSFMQGLEQLTTVHPEKLNSIGGATDPVPFPTLFTGLILVNLFYWCTNQSIV 264 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHhHHHHHhhcCchhhcccCCCCCCCcHHHHHHHHHHHHHHHHhCCHHHH
Confidence 77666665555444332222211110 1111111111 1222233332222122222 11222
Q ss_pred hhhhhhcCCCCChhhHHHHHHHHHHHHHHHHH---HHHHhcccccccccccHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Q 007913 292 TMAEETKKPSRDIPIGLVGSMCMITAVYCLMA---LALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTS 368 (585)
Q Consensus 292 ~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (585)
+-.=-.||+ |+..|+...+.....+.++... +......|++..+++..++....+..+++..-++..+.+.+.+++
T Consensus 265 qR~~aak~~-k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA~mST 343 (523)
T PRK10484 265 QRALGAKNL-AEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGDGLPNADMAYPTLVNDVLPVPLVGFFAAVLFGAILST 343 (523)
T ss_pred HHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhhHHHHHHHHHcchhHHHHHHHHHHHHHHHH
Confidence 333335664 6677887776555444333322 222222333222345566666667777887777777878888888
Q ss_pred HHHhhhhhhHH
Q 007913 369 LLVGSLGQARY 379 (585)
Q Consensus 369 ~~~~~~~~sR~ 379 (585)
..+.+.+.|-.
T Consensus 344 ~~s~l~s~st~ 354 (523)
T PRK10484 344 FNGFLNSASTL 354 (523)
T ss_pred HHHHHHHHHHH
Confidence 77777777655
No 78
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.14 E-value=0.00026 Score=74.04 Aligned_cols=289 Identities=16% Similarity=0.118 Sum_probs=134.4
Q ss_pred ccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchh
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDF 155 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~ 155 (585)
.|+++++-...-.+++.+|.+.+......... .|....+..+...+...+.++.++.--++. +.-...+|.++.||+.
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~~~~Ryg~~ 82 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYS-YGISGLWYAIGYAIGFLLFALFFAPRLRRS-GAVTIPEYLEKRYGSK 82 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHH-T-GGGGHHHHHHHHHHHHHHHHTHHHHHHT-T--SHHHHHHHHT-HH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeeccccchhHHHHHHHHHHhhccc-chhhhhhhhhhhcCCc
Confidence 47889887777777777766555443333333 455433333333333344444444433333 3447899999999998
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhH
Q 007913 156 V--AYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (585)
Q Consensus 156 ~--g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 233 (585)
. ..+.+....+..+...+....+.+..++..++ .+.. ....+...+.......-|.|...+
T Consensus 83 ~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g-i~~~----------------~~~~i~~~i~~iYt~~GGl~av~~ 145 (406)
T PF00474_consen 83 ALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG-IPYN----------------TAILIVGVIVIIYTFFGGLRAVAW 145 (406)
T ss_dssp H-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT---HH----------------HHHHHHHHHHHHTTCTT------S
T ss_pred hhhhhhcccccchhhhhhhhccccccccchhhccc-hhhh----------------HHHHHHHHHHHHhhhhhhHhhhhH
Confidence 8 66655556666667777777888888887776 2210 111122222333344457777776
Q ss_pred HHHHHHHHHHHHHHHHHHhheec-------------ccCCCCCCCCCcCh---hHHHHHHHHHHHHhhcHhHHhhhhhh-
Q 007913 234 LNWISSIVSSCVIVFVIIVGFVH-------------GKTTNLDPFLPYGT---EGVFEAAAVVYWSYTGFDMVATMAEE- 296 (585)
Q Consensus 234 ~~~~~~~~~~~~~~~~~i~~~~~-------------~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~G~e~~~~~~~E- 296 (585)
.+.+-.++.++..+++.+..+.. .+++..+.+.|.+. .+........+....|.....++...
T Consensus 146 td~iQ~~i~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~ 225 (406)
T PF00474_consen 146 TDFIQGVIMIIGAIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFFLSFWIALMLGTFGAPHFWQRF 225 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGGGS-TTHHHHSTHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCcccccchhhhHHHHHHHHhhhccchHHHHHH
Confidence 66555555544433333322211 01100111112221 00000000000111233333433333
Q ss_pred --hcCCCCChhhHHHHHHHHHHHHHHHH------HHHHHhccc----ccccccccHHHHHHHHhCcHHHHHHHHHHHHHH
Q 007913 297 --TKKPSRDIPIGLVGSMCMITAVYCLM------ALALTMMVK----YTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKG 364 (585)
Q Consensus 297 --~k~p~r~~p~ai~~~~~~~~~~y~l~------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (585)
.||+ |+..|++..+.....+++... ........| .++.+++..+.....+..+++..-++.++.+.+
T Consensus 226 ~aak~~-~~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~~~~~~aA 304 (406)
T PF00474_consen 226 LAAKSP-KTARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLAGLFLAGILAA 304 (406)
T ss_dssp HSSSHH-HHHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHHHHHHHHHHHH
T ss_pred HhcCCH-HHHHHHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhhhhccchhHHHHHHHHHHh
Confidence 3554 567787776654443333331 111222222 112233446677777777788888888888888
Q ss_pred HHHHHHHhhhhhhHHHHHHHhcC
Q 007913 365 MTTSLLVGSLGQARYTTQIARAH 387 (585)
Q Consensus 365 ~~~~~~~~~~~~sR~l~~~ardg 387 (585)
..++..+.+.+.+-. ++||=
T Consensus 305 ~~ST~~s~l~a~ss~---~~~Di 324 (406)
T PF00474_consen 305 IMSTADSLLLAISSI---FSRDI 324 (406)
T ss_dssp HHHHHHHHHHHHHHH---HHHHC
T ss_pred hhHHHHHHHhhhhhh---hhHHh
Confidence 888888887777765 45663
No 79
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=98.09 E-value=0.018 Score=59.19 Aligned_cols=74 Identities=15% Similarity=0.057 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc-CCC-chhHhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007913 115 LSYLASGLSALLSAFCYTEFAVEIP-VAG-GSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMID 188 (585)
Q Consensus 115 ~~~ll~~~~~~~~a~~~~el~s~~P-~~G-g~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~ 188 (585)
+.++..-+++.+.++..-|++.+.- .+| |.-.-+++.++|.+++..-....++.+...-.+..+.+..++.+++
T Consensus 48 y~ll~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ 123 (416)
T COG1914 48 YSLLWVILLSNLMAYILQELSARLGIVTGKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFG 123 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344445556667777777777776 344 4677788889999888876666666666666666666666666664
No 80
>PRK12488 acetate permease; Provisional
Probab=98.08 E-value=0.029 Score=60.93 Aligned_cols=154 Identities=14% Similarity=0.057 Sum_probs=89.7
Q ss_pred ccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHH-HHHHHHHhhhhccCCCchhHhHHHHhc-
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALL-SAFCYTEFAVEIPVAGGSFSFLRVELG- 153 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~-~a~~~~el~s~~P~~Gg~y~~~~~~~g- 153 (585)
.|++++|.......++.+++..|......... .|...++ +.++..+..+ ..+.+++--++... -..++|.++.||
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~-~G~~~~~-~~~g~~~g~~~~~~~~a~~lr~~g~-~T~~d~l~~Rf~s 142 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFM-NGYDGLL-YALGVLAGWPIILFLIAERLRNLGK-YTFADVVSYRLAQ 142 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChhHHH-HHHHHHHHHHHHHHHHHHHHHHCCC-cchHHHHHHHcCC
Confidence 58899999887777777766555543333333 4543322 2233333332 23444544444332 367888888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhH
Q 007913 154 DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (585)
Q Consensus 154 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 233 (585)
|....+.+....+..+........+.+..++..++ .+.. ..+.+..++...+...-|.|...+
T Consensus 143 ~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g-i~~~----------------~~iii~~~i~~~Yt~~GGm~av~~ 205 (549)
T PRK12488 143 GPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG-ISYL----------------YAVVIVGALMVLYVTFGGMLATTW 205 (549)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHH----------------HHHHHHHHHHHHHHhccchhHHHH
Confidence 56888888777777777777777777777777765 2210 012222223333444568888877
Q ss_pred HHHHHHHHHHHHHHHH
Q 007913 234 LNWISSIVSSCVIVFV 249 (585)
Q Consensus 234 ~~~~~~~~~~~~~~~~ 249 (585)
.+.+-.++.++..+++
T Consensus 206 td~iQ~~im~~~~i~~ 221 (549)
T PRK12488 206 VQIIKAVLLLSGTSFM 221 (549)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7776666665544433
No 81
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=98.07 E-value=0.0021 Score=66.29 Aligned_cols=250 Identities=18% Similarity=0.134 Sum_probs=133.1
Q ss_pred ccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhch
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGD 154 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~ 154 (585)
+++-+.+..+.-...++.|+|++..|... .. .|-. .++...+.+++.....+.+.+.++..++. ....-.++.+|+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~af-k~-~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~-ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAF-KT-AGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER-TYSSLGDLIFGK 79 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHH-HH-hcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC-CHHHHHHHHcCC
Confidence 45567788888888899999999888755 34 6654 66677778888888889999998888866 444455566666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHH
Q 007913 155 FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWL 234 (585)
Q Consensus 155 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 234 (585)
..........-. +..++.++.....+.+.........+++... ..........+....++..+++.+ ..... +.
T Consensus 80 ~g~~~~~v~~~~-~~~g~i~yliiigd~~p~~~~~~~~~~~~~~--~~~~~~~~ill~~~~~i~pLsl~k--~l~~L-k~ 153 (411)
T KOG1305|consen 80 LGKVDAAVAVKC-FGVGMVSYLIIIGDLLPGFIRSLFLDEEGGS--HYLDRNFLILLVLLFIILPLSLLK--NLDSL-KY 153 (411)
T ss_pred CceeeehhhHHh-hhccceEEEEEEccccchhhhhccccccccc--ccccceeEeehHHHHHHHHHHHHH--hhhhH-HH
Confidence 542211111000 0000000000011111111110000000000 000000001122222222233322 11111 12
Q ss_pred HHHHHHHHHHHHHHHHHhheecccC--CCCCCCCCcCh--hHHHHHHHHHHHHhhcHhHHhhhhhhhcCCC-CChhhHHH
Q 007913 235 NWISSIVSSCVIVFVIIVGFVHGKT--TNLDPFLPYGT--EGVFEAAAVVYWSYTGFDMVATMAEETKKPS-RDIPIGLV 309 (585)
Q Consensus 235 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~g~--~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~-r~~p~ai~ 309 (585)
...++...+..++.+++......+. .......+++. .+++.+++...++|.........-.|+|||+ |++-+...
T Consensus 154 tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~ 233 (411)
T KOG1305|consen 154 TSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSN 233 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHH
Confidence 2222222222222222222222111 11112222232 5788999999999999999999999999996 67889999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccc
Q 007913 310 GSMCMITAVYCLMALALTMMVKYTE 334 (585)
Q Consensus 310 ~~~~~~~~~y~l~~~~~~~~~~~~~ 334 (585)
.+...+..+|......-....+++.
T Consensus 234 ~~~~~~~~iy~~~g~~GYL~Fg~~v 258 (411)
T KOG1305|consen 234 IAIILATLIYLLTGLFGYLTFGDLV 258 (411)
T ss_pred HHHHHHHHHHHHHHHhhhheecccc
Confidence 9999999999999888776666543
No 82
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.05 E-value=0.03 Score=60.22 Aligned_cols=282 Identities=10% Similarity=-0.005 Sum_probs=129.7
Q ss_pred ccccChhHHHHHhhcccccccchh-ccHHhHhhccChhHHHHHHHHHHHH-HHHHHHHH-Hhh---hhccCCCchhHhHH
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFV-ITGQEAKKHAGPAIVLSYLASGLSA-LLSAFCYT-EFA---VEIPVAGGSFSFLR 149 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~-~~~~~~~~~~G~~~~~~~ll~~~~~-~~~a~~~~-el~---s~~P~~Gg~y~~~~ 149 (585)
.|++++|-...-..++.++...+. .++... . .|....+. .++..+. ......++ .+- .+....-..++|.+
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y-~-~G~~~~~~-~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~ 115 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVF-L-SGISESWI-AIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFT 115 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHH-H-cCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHH
Confidence 588999888776666666655554 344433 3 55543222 1222222 11111111 111 11233446889999
Q ss_pred HHhch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhh
Q 007913 150 VELGD---FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMS 226 (585)
Q Consensus 150 ~~~g~---~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 226 (585)
+.||+ ....+.+....+......+....+.+..++..++ .+. ...+.+...+.......-
T Consensus 116 ~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g-i~~----------------~~~iii~~~iv~iYt~~G 178 (502)
T PRK15419 116 GRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG-MSY----------------ETALWAGAAATILYTFIG 178 (502)
T ss_pred HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCH----------------HHHHHHHHHHHHHHHHhh
Confidence 99984 4555555555555555556666666677776665 211 012222233344445556
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhheec-c------------cCCCCCCCCCcChhHHHHHHHHHHHHhhcHhHHhhh
Q 007913 227 GTRRSSWLNWISSIVSSCVIVFVIIVGFVH-G------------KTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATM 293 (585)
Q Consensus 227 g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~ 293 (585)
|.|...+.+.+-.++.++..+++.+..+.. + +..+.+...+.++..+. +.......+.|.....+-
T Consensus 179 Gl~aV~~TD~iQ~~imi~g~i~~~~~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~p~~~qR 257 (502)
T PRK15419 179 GFLAVSWTDTVQASLMIFALILTPVIVIISVGGFGDSLEVIKQKSIENVDMLKGLNFVAII-SLMGWGLGYFGQPHILAR 257 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCccccCcccCCCHHHHH-HHHHHHHHHcCChHHHHh
Confidence 788777766666555544433322222111 1 01111111111122222 111112223333222222
Q ss_pred hhhhcCCCCChhhHHHHH----HHHHHHHHHHHHHHHHh--ccccc----ccccccHHHHHHHHhCcHHHHHHHHHHHHH
Q 007913 294 AEETKKPSRDIPIGLVGS----MCMITAVYCLMALALTM--MVKYT----EIDMNAAYSIAFRQIGMNWAKYLVSVCALK 363 (585)
Q Consensus 294 ~~E~k~p~r~~p~ai~~~----~~~~~~~y~l~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (585)
.--.||+ |++.++...+ ........++....... ..|.. ..+++..+.....+..++++.-++..+.+.
T Consensus 258 ~~aak~~-~~~~~a~~~~~~~~~~~~~~~~~ig~~~~~~~~~~p~~~~~~~~~~d~~~~~l~~~~lp~~l~gl~~a~ilA 336 (502)
T PRK15419 258 FMAADSH-HSIVHARRISMTWMILCLAGAVAVGFFGIAYFNEHPAVAGAVNQNAERVFIELAQILFNPWIAGILLSAILA 336 (502)
T ss_pred heecCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCcchHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 2223554 2233332221 11111111111111111 11210 012344566666666778888888888888
Q ss_pred HHHHHHHHhhhhhhHH
Q 007913 364 GMTTSLLVGSLGQARY 379 (585)
Q Consensus 364 ~~~~~~~~~~~~~sR~ 379 (585)
+.+++..+.+.+.|-.
T Consensus 337 A~mST~~s~l~a~ss~ 352 (502)
T PRK15419 337 AVMSTLSCQLLVCSSA 352 (502)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888777654
No 83
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.99 E-value=0.00045 Score=73.14 Aligned_cols=171 Identities=15% Similarity=0.120 Sum_probs=89.2
Q ss_pred cccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCC-chhHhHHHHh
Q 007913 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAG-GSFSFLRVEL 152 (585)
Q Consensus 75 l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~G-g~y~~~~~~~ 152 (585)
.+|+-++++.+.+=++..+....+..-.......-+.. ++++.+++.++........+.++ |+.| ......|..|
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G---~r~Gl~~~v~sR~~F 81 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIG---PRTGLPTMVLSRASF 81 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHH---HCC---HHHHTTTTS
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccc---cccCCCchhcchhcc
Confidence 36778889988886665554444432222211111222 66666666666555544445554 4444 3566667789
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhccc-ccCCCCCcchHHHHHHHHHHHHHHhhhhhhh
Q 007913 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVD-CFADGFNLLDPVAVLILLVCNGIAMSGTRRS 231 (585)
Q Consensus 153 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 231 (585)
|.+.+.+......+..+.-.+......++.+....+...+. +.. .+ ..........+..+++.++.......|.|..
T Consensus 82 G~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~-~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~l 159 (440)
T PF02133_consen 82 GYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGS-FLW-IGNAIIGIALPLWVCFFIFWLIQTLFAIYGMKAL 159 (440)
T ss_dssp -TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------HH-----------HHHHHHHHHHHHHHCTHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCc-chh-hhhhhhcchhhHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99888888888777777777777777788888777621110 000 00 0000000111222333445566677888888
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 007913 232 SWLNWISSIVSSCVIVFVI 250 (585)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~ 250 (585)
.+++.+...+.....+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~ 178 (440)
T PF02133_consen 160 RRLAVIAAPILLVVFIGML 178 (440)
T ss_dssp HHHHHCCHHHHHHHHHHHH
T ss_pred HhHHhhhhHHHHhhhhhee
Confidence 8888877765544433333
No 84
>PRK09395 actP acetate permease; Provisional
Probab=97.93 E-value=0.054 Score=58.95 Aligned_cols=151 Identities=11% Similarity=0.041 Sum_probs=82.0
Q ss_pred ccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHH-HHHHHHHhhhhccCCCchhHhHHHHhc-
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALL-SAFCYTEFAVEIPVAGGSFSFLRVELG- 153 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~-~a~~~~el~s~~P~~Gg~y~~~~~~~g- 153 (585)
.|++++|.......++.++...|......... .|...++ +.++..+..+ ..+.+++--++.. .-..++|.++.||
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~-~G~~~~~-~~~~~~~g~~~~~~~~~~~~r~~g-~~T~~d~l~~Rygs 144 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFT-SGYDGLI-YSIGFLVGWPIILFLIAERLRNLG-KYTFADVASYRLKQ 144 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHH-hCHHHHH-HHHHHHHHHHHHHHHHHHHHhhCC-CccHHHHHHHHcCC
Confidence 47899887666666666665544433333223 4544322 2222322222 2333333222222 2356778889998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhH
Q 007913 154 DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (585)
Q Consensus 154 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 233 (585)
|....+.+....+..+........+.+..++..++ .+. ...+.+..++.......-|.|...+
T Consensus 145 ~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g-i~~----------------~~~ili~~~i~~iYt~~GGm~av~~ 207 (551)
T PRK09395 145 GPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG-LNY----------------HVAVVLVGVLMMVYVLFGGMLATTW 207 (551)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCH----------------HHHHHHHHHHHHHHHhhcchHHHHH
Confidence 56788887777766666666767777777777665 221 0122222233444445568888777
Q ss_pred HHHHHHHHHHHHH
Q 007913 234 LNWISSIVSSCVI 246 (585)
Q Consensus 234 ~~~~~~~~~~~~~ 246 (585)
.+.+-.++.++..
T Consensus 208 TD~iQ~iim~~g~ 220 (551)
T PRK09395 208 VQIIKAVLLLSGA 220 (551)
T ss_pred HHHHHHHHHHHHH
Confidence 7666655555443
No 85
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.91 E-value=0.058 Score=58.60 Aligned_cols=152 Identities=12% Similarity=0.071 Sum_probs=82.1
Q ss_pred ccccChhHHHHHhhcccccccchh-ccHHhHhhccChhHHHHHHHHHHHHH-HHHHHHHHhhhhccCCCchhHhHHHHhc
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFV-ITGQEAKKHAGPAIVLSYLASGLSAL-LSAFCYTEFAVEIPVAGGSFSFLRVELG 153 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~-~~~~~~~~~~G~~~~~~~ll~~~~~~-~~a~~~~el~s~~P~~Gg~y~~~~~~~g 153 (585)
.|++++|....-..++.++..-|. .++... . .|...++.. ++..+.. ...+.+++--++.-. -...+|.++.||
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y-~-~G~~~~~~~-~g~~~~~~i~~~~~a~~lrr~g~-~T~~d~l~~Rf~ 141 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVY-T-SGYDGLIYS-LGFLVGWPIILFLIAERLRNLGR-YTFADVASYRLK 141 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hChHHHHHH-HHHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHcC
Confidence 578888866554455545443333 344333 2 454322211 2333332 334455554444432 356778888887
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhh
Q 007913 154 -DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (585)
Q Consensus 154 -~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 232 (585)
|....+.+....+..+........+.+..++..++ .+. ...+.+..++.......-|.|...
T Consensus 142 s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g-i~~----------------~~~iii~~~i~~~Yt~~GGm~av~ 204 (549)
T TIGR02711 142 QRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG-LNY----------------HVAVVLVGILMVMYVLFGGMLATT 204 (549)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCH----------------HHHHHHHHHHHHHHHHhhhhHHHH
Confidence 55677777666666666666666777777777666 211 011222223334444556888888
Q ss_pred HHHHHHHHHHHHHHHH
Q 007913 233 WLNWISSIVSSCVIVF 248 (585)
Q Consensus 233 ~~~~~~~~~~~~~~~~ 248 (585)
+.+.+-.++.++..++
T Consensus 205 ~td~iQ~~im~~g~i~ 220 (549)
T TIGR02711 205 WVQIIKAVLLLFGATF 220 (549)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777666665554433
No 86
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.89 E-value=0.064 Score=58.44 Aligned_cols=148 Identities=10% Similarity=0.054 Sum_probs=86.4
Q ss_pred ccccChhHHHHHhhcccccccchhccHHhHhhccChhH-H--HHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHh
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAI-V--LSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVEL 152 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~-~--~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~ 152 (585)
.|++++|-...-..++.+++..+......... .|... + +++.++ ....++.+++.-++... -..++|.++.|
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~-~G~~~~~~~~g~~~~---~~~~~~~~~p~~rr~~~-~T~~e~l~~Rf 105 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAF-LGYDGLAYLMGWTGG---YVLLALLLAPYLRKFGK-YTVPDFIGDRY 105 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHH-hChHHHHHHHHHHHH---HHHHHHHHHHHHHHCCC-ccHHHHHHHHh
Confidence 58899998777777766665544433322222 45432 1 222222 23345666666666653 47899999999
Q ss_pred c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhh
Q 007913 153 G-DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRS 231 (585)
Q Consensus 153 g-~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 231 (585)
| |....+.+....+..+...+....+.+..++...+ .+.. ..+.+..++.......-|.|..
T Consensus 106 ~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g-i~~~----------------~~iii~~~i~~iYt~~GG~~aV 168 (552)
T TIGR03648 106 YSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE-VDFE----------------TGVFIGMAIVFFYAVLGGMKGV 168 (552)
T ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHH----------------HHHHHHHHHHHHHHHhhhHHHH
Confidence 8 44677777777777777777777777777777766 2210 1121222333444445688877
Q ss_pred hHHHHHHHHHHHHH
Q 007913 232 SWLNWISSIVSSCV 245 (585)
Q Consensus 232 ~~~~~~~~~~~~~~ 245 (585)
.+.+.+-.++.++.
T Consensus 169 ~~TD~iQ~iim~ig 182 (552)
T TIGR03648 169 TWTQVAQYIVLIVA 182 (552)
T ss_pred HHHHHHHHHHHHHH
Confidence 77665555544443
No 87
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.80 E-value=0.077 Score=56.76 Aligned_cols=282 Identities=13% Similarity=0.091 Sum_probs=145.4
Q ss_pred ccccChhHHHHHhhccc-cc-ccchhccHHhHhhccChhHHHHHH----HHHHHHHHHHHHHHHhhhhccCCCchhHhHH
Q 007913 76 QKCLTWWDLTWLCFGSV-VG-SGIFVITGQEAKKHAGPAIVLSYL----ASGLSALLSAFCYTEFAVEIPVAGGSFSFLR 149 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~-ig-~gi~~~~~~~~~~~~G~~~~~~~l----l~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~ 149 (585)
.|+++++ ..+++.+.. .+ ...+..++.... .|....+..+ ...+.....+--..+++ +-+..-..++|.+
T Consensus 37 gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~--~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~ 112 (493)
T COG0591 37 GRSLGPF-VYALSAAASDTSGWTFLGLPGLAYA--SGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLE 112 (493)
T ss_pred CCcCChH-HHHHHHHHHHHHHHHHhcchHHHHh--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHH
Confidence 5889998 666655543 34 555556666543 4554333222 33344444555566666 4555668899999
Q ss_pred HHhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhh
Q 007913 150 VELG-DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGT 228 (585)
Q Consensus 150 ~~~g-~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 228 (585)
+.|| +....+.+....+..+...+....+.+..+...++ .+.. ....+...++.......|.
T Consensus 113 ~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~~~----------------~~~~~~~~~v~~Yt~~gG~ 175 (493)
T COG0591 113 ARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-ISYV----------------TGILIGALIVALYTFLGGL 175 (493)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCHH----------------HHHHHHHHHHHHHHHHcCh
Confidence 9999 88999999988999999999999988888866665 2210 1222223333444444566
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhheec-c----------cCCC---CCCCC-CcChhHHHH--HH-HHHHHHhhcHhHH
Q 007913 229 RRSSWLNWISSIVSSCVIVFVIIVGFVH-G----------KTTN---LDPFL-PYGTEGVFE--AA-AVVYWSYTGFDMV 290 (585)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~----------~~~~---~~~~~-~~g~~~~~~--~~-~~~~~~~~G~e~~ 290 (585)
|...+...+=..+..+.+..+.+..... . ..++ ..++. +..+..... .. ......+..-+..
T Consensus 176 ~av~~Td~iqg~im~i~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~ 255 (493)
T COG0591 176 RAVVWTDFIQGLIMLIALIVIPILVLILFGGFGELFAVLASLAPLFLTHPFDGALSPIYIISLIAWGTLFLGYFGQPHIL 255 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhcccccccCcccccchHHHHHHHHHHHHHHhhhhcCchhh
Confidence 6655544444443333332222222111 0 0010 01111 011111111 11 1112223333444
Q ss_pred hhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHH-----HHhcccc-----cccccccHHHHHHHHhCcHHHHHHHHHH
Q 007913 291 ATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALA-----LTMMVKY-----TEIDMNAAYSIAFRQIGMNWAKYLVSVC 360 (585)
Q Consensus 291 ~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~-----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (585)
.+.-. .|+++ +.||.......+-.+.+++..++ ....... .+.+.+..+........+++..-++..+
T Consensus 256 ~r~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~g~~~~a 333 (493)
T COG0591 256 PRFMA-AKSIK-SLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLLPDLSVPLLNPELVFPYLILALFPPWIAGLLLAA 333 (493)
T ss_pred hhhhh-hccHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCHHHHHHHHHHHHChHHHHHHHHHH
Confidence 44444 55553 33533333333333322222111 1111111 1123445677777777788888777777
Q ss_pred HHHHHHHHHHHhhhhhhHHH
Q 007913 361 ALKGMTTSLLVGSLGQARYT 380 (585)
Q Consensus 361 ~~~~~~~~~~~~~~~~sR~l 380 (585)
.+.+..++..+.+...+-.+
T Consensus 334 ilaAvmSt~ss~ll~~ss~~ 353 (493)
T COG0591 334 ILAAVMSTASSQLLVASSAI 353 (493)
T ss_pred HHHHHHHHHHHHHHhhhHHH
Confidence 77777777766666665543
No 88
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=97.70 E-value=0.099 Score=55.21 Aligned_cols=344 Identities=13% Similarity=0.129 Sum_probs=151.5
Q ss_pred cccccChhHHHHHhhcccccccchhcc-----------HHhHhhccC-h-------------hHHHHHHHHHHHHHHHHH
Q 007913 75 LQKCLTWWDLTWLCFGSVVGSGIFVIT-----------GQEAKKHAG-P-------------AIVLSYLASGLSALLSAF 129 (585)
Q Consensus 75 l~r~l~~~~~~~i~~~~~ig~gi~~~~-----------~~~~~~~~G-~-------------~~~~~~ll~~~~~~~~a~ 129 (585)
-|.++|.++.+++.+++-+|.|+..-. +... . .+ + ..+.+|.+-++..+..++
T Consensus 71 ~kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~-~-p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay 148 (485)
T PF02028_consen 71 AKPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGI-E-PGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAY 148 (485)
T ss_dssp S--SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT--T-TT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCC-C-CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhe
Confidence 356799999999999988888875321 1110 0 11 0 023466777777777777
Q ss_pred HHHHhhhhccCCCchhHhHHHHhchhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcccCCccchhcccccCCC
Q 007913 130 CYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVV----GAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADG 205 (585)
Q Consensus 130 ~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (585)
.+..-.....-+...|....+...+..|.+.=....++.+. +........+.-++..++ .+++...
T Consensus 149 ~~y~k~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~G-i~~~~~~--------- 218 (485)
T PF02028_consen 149 FFYNKGKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLSSLFG-IPNTFGL--------- 218 (485)
T ss_dssp HHHTS---SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SSSTHHH---------
T ss_pred eeeecCCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcC-CCCchHH---------
Confidence 77663333333444444444333233444443333343333 333334444555555555 3332211
Q ss_pred CCcchHHHHHHHHHHHHHHhhh----hhhhhHHHHHHHHHHHHHHHHHHHhheec--------------cc---C-CCCC
Q 007913 206 FNLLDPVAVLILLVCNGIAMSG----TRRSSWLNWISSIVSSCVIVFVIIVGFVH--------------GK---T-TNLD 263 (585)
Q Consensus 206 ~~~~~~~~~~~~~~~~~i~~~g----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--------------~~---~-~~~~ 263 (585)
...+..++.++.+.-...| +|..+++|..+... .++.+.+.+-.. .+ . -+..
T Consensus 219 ---~~~ii~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~---ll~~vl~~Gpt~fil~~~~~s~G~yl~~f~~~s~~t~ 292 (485)
T PF02028_consen 219 ---QIIIIIVITVIFTISAVSGLDKGIKRLSNINVYLAFA---LLLFVLLFGPTVFILNLFTESIGDYLQNFFRMSLWTD 292 (485)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH---HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT--T
T ss_pred ---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1233334444444445544 45555555544443 333333222110 00 0 0111
Q ss_pred CCCCcC-hhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhc--cccc-----cc
Q 007913 264 PFLPYG-TEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMM--VKYT-----EI 335 (585)
Q Consensus 264 ~~~~~g-~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~--~~~~-----~~ 335 (585)
++.+.+ |.+-+..+..+.|.-.+--....++.=.|. |++.--+...++... +....-..+.+. ...+ +.
T Consensus 293 ~~~~~~~w~~~WTvFYwaWWiawaPfvG~FiArISkG--RTIRE~il~~~~~ps-l~~~~wf~ifGg~al~~~~~g~~~~ 369 (485)
T PF02028_consen 293 PFGNSGQWPQDWTVFYWAWWIAWAPFVGLFIARISKG--RTIREFILGVLLVPS-LFCFLWFSIFGGYALYLQLSGAGDL 369 (485)
T ss_dssp TTTTTTHHHHHTHHHHHHHHHHTHHHHHHHHHHCTTT--SBHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCTSS-H
T ss_pred cccCcccccCCCHHHHHHHHHHHHHHHHHHHhhhcCC--cCHHHHHHHHHHhhH-HHHHHHHHHHCchHHhhHhhhhhhH
Confidence 333333 544444444444443443444444444443 787544444433333 322222222211 1111 11
Q ss_pred ---cccc---HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCchhhhccCCCCCchHHHHHH
Q 007913 336 ---DMNA---AYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLL 409 (585)
Q Consensus 336 ---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~ 409 (585)
..++ .+...+++.. ...++.+..++..+....+..-+.+..+-.++.+| +.+ -..+.+..|-
T Consensus 370 ~~~~~~g~~~a~~~~l~~lP---~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~-------~~e--p~~~~ri~W~ 437 (485)
T PF02028_consen 370 AAANEQGPEAALFAFLEQLP---LSKILSILFLILIFIFFVTSADSATYVLAMLSSKG-------DEE--PPRWLRIFWG 437 (485)
T ss_dssp HHHHHH-HHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-------TSS--S-HHHHHHHH
T ss_pred HHHhhcchhhHHHHHHHHhh---HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCC-------CCC--CchHHHHHHH
Confidence 0111 2223333332 23344444444555555556666777777777665 112 2233333332
Q ss_pred H--HHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007913 410 V--TTLSAIIALFSS---LNILSSVFSFSTLSIFMLMAIALLVRRYY 451 (585)
Q Consensus 410 ~--~~i~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~l~~r~~ 451 (585)
. ++++..+...+. .+.+..+.++...+...+.+.+.++.-|+
T Consensus 438 ~~~~~~a~~ll~~ggl~~lq~~~ii~~lP~~~v~~~~~~~~~k~l~~ 484 (485)
T PF02028_consen 438 LIIGALAIVLLLIGGLDALQSASIIGGLPFSFVMLLMCISFIKALKE 484 (485)
T ss_dssp HHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 233334444444 44455555556666666666676654443
No 89
>PLN00151 potassium transporter; Provisional
Probab=97.46 E-value=0.043 Score=60.08 Aligned_cols=221 Identities=12% Similarity=0.071 Sum_probs=102.6
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhe---ecccCCCCCCCCCc---------ChhHHHHH
Q 007913 209 LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGF---VHGKTTNLDPFLPY---------GTEGVFEA 276 (585)
Q Consensus 209 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~~---------g~~~~~~~ 276 (585)
+..+++++++.+..+.-+|+...++ .+..+.++-++.+...|+ .+.++.-+..+.|. +..+ +..
T Consensus 274 VV~Is~~ILv~LF~~Q~~GT~kVg~---~FgPImllWFl~i~~iGiynI~~~~p~Vl~AlnP~Y~~~Ff~~~~~~g-w~~ 349 (852)
T PLN00151 274 VVMISVAFLVILFSVQRFGTSKVGF---AFGPALALWFCSLGGIGIYNLVKYDSSVFRAFNPVYIYYFFKRNSTKA-WSA 349 (852)
T ss_pred ehhHHHHHHHHHHHHHhccchhhhh---hhccHHHHHHHHHHHHHHHHHHhcCHHHHhhhCHHHHHHHHHhCCCce-EEE
Confidence 3467788888888888888766554 455544444444444444 34444333344442 1111 122
Q ss_pred HHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhCcHHHHHH
Q 007913 277 AAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYL 356 (585)
Q Consensus 277 ~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (585)
+..++.+.+|.|+.-.=-+.. .+|.+.+|-..-+.=+.++--+-.-++...-| + +..+|+.. ...+++.+-
T Consensus 350 LGgVvLciTGaEALfADLGHF--g~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p-~--~~~npFy~----svP~~~~wP 420 (852)
T PLN00151 350 LGGCVLCATGSEAMFADLGYF--SVRSIQLAFTCLVLPCLLLAYMGQAAYLMKNP-D--SAEQIFFS----SVPSSLFWP 420 (852)
T ss_pred ecceeeeeccchhhhcccCCC--CccceeeeehhhHHHHHHHHHcchHHHHhcCc-c--cccCcHHH----hCCchhHHH
Confidence 344557778888763321221 23445444332222222221111122221111 1 12334432 233444443
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCch-hhhccCCCC-C---chHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 007913 357 VSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP-WFALVHPKT-Q---TPINATLLVTTLSAIIALFSSLNILSSVFS 431 (585)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~~-~---~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~ 431 (585)
+.+.+.++..-+.-+.+.++=-+....-+-|.+|+ +.-|.+++. | .|..-.++.....++...+.+-+.+.+..+
T Consensus 421 ~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l~~AYG 500 (852)
T PLN00151 421 VFLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVCSFRSITDIGNAYG 500 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhheeeecCHHHHHHHhh
Confidence 33333333333333333333344445556789994 334444332 2 465544444333333444456677777777
Q ss_pred HHHHHHHHHHH
Q 007913 432 FSTLSIFMLMA 442 (585)
Q Consensus 432 ~~~~~~~~~~~ 442 (585)
++......+..
T Consensus 501 iAV~~vM~iTT 511 (852)
T PLN00151 501 IAEVGVMMVST 511 (852)
T ss_pred hhhhhhhhHHH
Confidence 77665555543
No 90
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=97.29 E-value=0.18 Score=53.29 Aligned_cols=229 Identities=17% Similarity=0.154 Sum_probs=115.5
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhheeccc--CCCCCCCCC---------cChhHHHHHH
Q 007913 209 LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGK--TTNLDPFLP---------YGTEGVFEAA 277 (585)
Q Consensus 209 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~---------~g~~~~~~~~ 277 (585)
+..+++++++.+..+.-+|....+++ +..+.++=++.+.+.|+...- ++-+..++| ++..+ +..+
T Consensus 132 Vv~it~~ILv~LF~iQ~~GT~~ig~~---FgPim~~WF~~l~~~G~~~I~~~p~Vl~A~nP~yai~f~~~~~~~~-~~~L 207 (534)
T PF02705_consen 132 VVPITIAILVGLFAIQRFGTAKIGKL---FGPIMLLWFLTLGVLGLYNIIQHPEVLKALNPYYAIRFFIRNGWIG-FFVL 207 (534)
T ss_pred ehhHHHHHHHHHHHHHhhhhhHHHHH---HhHHHHHHHHHHHHHHHHHHhhCHHHHHHhCHHHHHHHHHHcCCch-hhhc
Confidence 34677788888888888887666554 555555555555555544321 221222222 22222 2345
Q ss_pred HHHHHHhhcHhHHhhhhhhhcCC-CCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhCcHHHHHH
Q 007913 278 AVVYWSYTGFDMVATMAEETKKP-SRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYL 356 (585)
Q Consensus 278 ~~~~~~~~G~e~~~~~~~E~k~p-~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (585)
...+.+.+|-|+.-. ++-+= +|++.++-..-+.-+.++.-+-.-+....-| + ..++|+... ..+|..+-
T Consensus 208 G~V~L~~TGaEALyA---DmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p-~--~~~npFf~~----~P~~~~~p 277 (534)
T PF02705_consen 208 GAVFLCVTGAEALYA---DMGHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHP-E--AVSNPFFLL----IPEWLLWP 277 (534)
T ss_pred chHHHHHhhHHHHHh---hhccccchhhhhhHHHHHHHHHHHHHccHHHHHHcCc-c--hhhhHHHHH----hHHHHHHH
Confidence 566788899998753 33332 3455444332122211111111111111111 1 123455433 33455554
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCch-hhhccCCCC-C---chHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 007913 357 VSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP-WFALVHPKT-Q---TPINATLLVTTLSAIIALFSSLNILSSVFS 431 (585)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~~-~---~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~ 431 (585)
+.+.+.++..-+..+.+.++=-+....-+-|.+|+ ...|.+++. | .|..-.++......+...+.+-+.+.+..+
T Consensus 278 ~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~AYG 357 (534)
T PF02705_consen 278 MVILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAAYG 357 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHHHHH
Confidence 44444444444444444445555666678899994 344444333 2 465544444443334444556678888888
Q ss_pred HHHHHHHHHHHHH-HHHHHhc
Q 007913 432 FSTLSIFMLMAIA-LLVRRYY 451 (585)
Q Consensus 432 ~~~~~~~~~~~~~-~l~~r~~ 451 (585)
++......+..+- .++.|++
T Consensus 358 iAVt~tM~iTT~L~~~v~~~~ 378 (534)
T PF02705_consen 358 IAVTGTMLITTILLFLVMRRV 378 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 8877777665543 3344443
No 91
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=97.27 E-value=0.27 Score=49.79 Aligned_cols=314 Identities=14% Similarity=0.179 Sum_probs=159.6
Q ss_pred HHhhcccccccchhccHHhHhhccChh---HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHHHHHH
Q 007913 86 WLCFGSVVGSGIFVITGQEAKKHAGPA---IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAG 162 (585)
Q Consensus 86 ~i~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~ 162 (585)
++.++.-.|+|-...|...-.. +|.. +.+++++.++..=..+..- .-.+||.+.=..+..||+.|.+..-
T Consensus 12 fmLFalFFGAGNlIFPP~LG~~-aG~~~~~A~lGFllTgVglPlLgiIa------~a~~g~~~~~l~~~i~~~fg~~f~~ 84 (431)
T COG1114 12 FMLFALFFGAGNLIFPPMLGLH-AGEHVWPAILGFLLTGVGLPLLGIIA------VALYGGGVESLATRIGPWFGVLFAI 84 (431)
T ss_pred HHHHHHHhcCCCccCChhhhhh-cCccHHHHHHHHHHHHhhHHHHHHHH------hhccCCCHHHHhhhccchHHHHHHH
Confidence 3344444688887777765444 7753 6667777766543333222 2234565665666778877766543
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHhhcccCCccchhcc-cccCC-CCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 007913 163 NILLEAVVGAAGL--ARSWSSYLASMIDSNNSDLLRFKV-DCFAD-GFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWIS 238 (585)
Q Consensus 163 ~~~l~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 238 (585)
...+. ..+.. .+..+ ..++... |...+ +.....+..+++..+..++.+...|...|+.+++
T Consensus 85 ~iyLs---IGPffAiPRt~~------------vsfe~~i~p~~~~~~~~~l~ifs~ifF~ia~~~sl~psklid~vGk~L 149 (431)
T COG1114 85 AIYLS---IGPFFAIPRTGA------------VSFEVGISPLLGDSSLPSLFIFSVIFFAIAYLFSLNPSKLIDRVGKFL 149 (431)
T ss_pred HHHHH---hcccccCCcccc------------hhHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 22221 11110 00000 0111110 11111 1222346777888888899999999999999999
Q ss_pred HHHHHHHHHHHHHhheecccCCCC--------CCCCCcCh-hHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHH
Q 007913 239 SIVSSCVIVFVIIVGFVHGKTTNL--------DPFLPYGT-EGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLV 309 (585)
Q Consensus 239 ~~~~~~~~~~~~i~~~~~~~~~~~--------~~~~~~g~-~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~ 309 (585)
+.++++.++++.+..+.+.+..-. +++.. |+ .|..+.=..+..+|...-.-+--..-.+++ |+..|-.+
T Consensus 150 TPilLv~l~il~i~~~~~p~g~~~~a~~~y~~~pf~~-GfleGY~TMDaLAal~FgivIv~alk~~g~~~~-~~~~~~~~ 227 (431)
T COG1114 150 TPILLVLLLILVIAAIIPPAGPISAASGAYQSQPFSK-GFLEGYLTMDALAALAFGIVIVNALKSKGVTTK-KQIIKYTI 227 (431)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCcccccHHHHhChHHH-HHhcchHHHHHHHHHHHHHHHHHHHHHhccCcH-HHHHHHHH
Confidence 999999988888876654332111 11111 11 122222223334444432222222333333 34445544
Q ss_pred HHHHHHHHHHHHHHHHH--Hhcccccccc---cc-cHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 007913 310 GSMCMITAVYCLMALAL--TMMVKYTEID---MN-AAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQI 383 (585)
Q Consensus 310 ~~~~~~~~~y~l~~~~~--~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ 383 (585)
.+-.+..+.-.+.-..+ .+....+... +. .-+....+...|+.+..++.+...++++++..+...+.+..
T Consensus 228 ~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aef---- 303 (431)
T COG1114 228 KAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEF---- 303 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 44444433322222222 2222222111 11 12334445666788888888888889888888877776654
Q ss_pred HhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 007913 384 ARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIF 438 (585)
Q Consensus 384 ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~ 438 (585)
|+|.-||-.-..++++ ..+++.++.-. .++.+..+..-.-...|
T Consensus 304 ---------F~~~~p~~SY~~~v~i-f~i~sflvan~-GL~~Ii~isvPvL~~iY 347 (431)
T COG1114 304 ---------FSKLVPKLSYKTWVII-FTLISFLVANL-GLEQIIKISVPVLTAIY 347 (431)
T ss_pred ---------HHHhcccccHHHHHHH-HHHHHHHHHHh-hHHHHHHHHHHHHHHHh
Confidence 4455544444444443 33344444433 35666665554333444
No 92
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.66 E-value=1 Score=46.49 Aligned_cols=270 Identities=10% Similarity=0.080 Sum_probs=139.8
Q ss_pred HHHHHHHhhhhccCCCchhHhHH-HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCC
Q 007913 127 SAFCYTEFAVEIPVAGGSFSFLR-VELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADG 205 (585)
Q Consensus 127 ~a~~~~el~s~~P~~Gg~y~~~~-~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (585)
..+..+|--+++-+- ..-++.. |.-.+...++.+....+...+.......+.+..+..+++ .+.
T Consensus 90 ~~fL~A~~LRk~Gky-T~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g-v~~------------- 154 (529)
T COG4147 90 LLFLIAEYLRKLGKY-TFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG-VPY------------- 154 (529)
T ss_pred HHHHHHHHHHhcCCc-chHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC-CCc-------------
Confidence 566777776666543 3444444 444567777777777777777777777788888887776 211
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhheeccc--CC-------------CCCCCCCcCh
Q 007913 206 FNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGK--TT-------------NLDPFLPYGT 270 (585)
Q Consensus 206 ~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-------------~~~~~~~~g~ 270 (585)
...+.++.++......+-|+|...+.|.+=.++.+...++..+....+.+ +. +.+...+.|.
T Consensus 155 ---~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl 231 (529)
T COG4147 155 ---HVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGL 231 (529)
T ss_pred ---eeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCC
Confidence 11334444555566666788888888876666555544443333222211 10 0000111111
Q ss_pred --hHHHHHHHHHHHHhhcHhHHhhhhhh---hcCCCCChhhHHHHHHHHHHHHHHHHHHHHH----hcc--ccc------
Q 007913 271 --EGVFEAAAVVYWSYTGFDMVATMAEE---TKKPSRDIPIGLVGSMCMITAVYCLMALALT----MMV--KYT------ 333 (585)
Q Consensus 271 --~~~~~~~~~~~~~~~G~e~~~~~~~E---~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~----~~~--~~~------ 333 (585)
...+..+...+--..|.-..+|.--. +++ .|+..|+..++......+|+..-..-. .+. |..
T Consensus 232 ~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~-~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A~~~v~t~~~~~p~w~~ 310 (529)
T COG4147 232 LYKDPIDFISLGFALMVGTAGLPHILMRFFTVPD-AKEARKSVFWATGFIGIFYILTPIIGAGARLLVGTNPVGKPAWAA 310 (529)
T ss_pred cccCHHHHHHHHHHHHHccCCCCeEEEEEEecCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhh
Confidence 22333344444444666666665422 122 255667788888899999988655421 111 111
Q ss_pred ------cccc-------ccHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHhcCCCchhhhc
Q 007913 334 ------EIDM-------NAAYSIAFRQIG-MNWAKYLVSVCALKGMTTSLLVGSLGQ----ARYTTQIARAHMIPPWFAL 395 (585)
Q Consensus 334 ------~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----sR~l~~~ardg~lP~~~~~ 395 (585)
|... +.....+....+ +++...++..+.+...++..-+..... ||=+|.+--++. .++
T Consensus 311 ~w~~~~D~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~iasavsHDiY~~vik~~----ase 386 (529)
T COG4147 311 KWIKTGDANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLVIASAVSHDLYAMVIKKG----ATE 386 (529)
T ss_pred cccccccccccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhCCC----CCc
Confidence 1110 112333344555 577766666666665555544444333 344444332221 222
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHH
Q 007913 396 VHPKTQTPINATLLVTTLSAIIALF 420 (585)
Q Consensus 396 ~~~~~~~P~~ai~~~~~i~~~~~~~ 420 (585)
.. +-..-..+..+..+++..+...
T Consensus 387 ~~-~v~vaRi~~v~~~vva~~lgi~ 410 (529)
T COG4147 387 KK-EVRVARIAVVILGVVAILLGIL 410 (529)
T ss_pred cc-eehhHHHHHHHHHHHHHHheec
Confidence 11 2333334555555555555444
No 93
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=96.49 E-value=0.015 Score=56.40 Aligned_cols=230 Identities=11% Similarity=0.081 Sum_probs=127.3
Q ss_pred ccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCc-------hhHhH
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGG-------SFSFL 148 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg-------~y~~~ 148 (585)
+.+++.|+.-.-.-..+-|.=+..+|-.+ ..+|-.++.+.+..+.++..+.-.+.|--= -|...| .|.-+
T Consensus 114 ~~kI~a~qAaWNVTNAIQGMFivgLP~Av--lhGGyw~i~amvg~A~vCcyTGk~Li~CLY-E~~~dGevVrvRdsYvaI 190 (524)
T KOG4303|consen 114 SEKISALQAAWNVTNAIQGMFIVGLPIAV--LHGGYWSIGAMVGVAYVCCYTGKLLIECLY-ENGEDGEVVRVRDSYVAI 190 (524)
T ss_pred CCccHHHHHhhhhhhhhheeeEeccceee--eEcchhHHHHHHhhhhhhhccchhhhhhhc-cCCCCCcEEEeehhHHHH
Confidence 45688888765555444454444445444 337776666666666555444433322110 011122 34444
Q ss_pred HHH-hchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cCCccchhcccccCCCCCcchHHHHHHHHHHHHHH
Q 007913 149 RVE-LGDFVA-YIAAGNILLEAVVGAAGLARSWSSYLASMIDS--NNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIA 224 (585)
Q Consensus 149 ~~~-~g~~~g-~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (585)
.+. ++|.+| ..+....++..+.++..+....++.+...+++ .+...| ..+..+.++-+.+
T Consensus 191 A~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sW--------------m~i~~a~LLpc~F-- 254 (524)
T KOG4303|consen 191 ADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASW--------------MMITSASLLPCSF-- 254 (524)
T ss_pred HHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCccccch--------------hhhhhHHHhhhHH--
Confidence 444 666655 55555666777777778888888888877762 112222 1333444444443
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHhheecccCCCCCCC-CCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCC
Q 007913 225 MSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPF-LPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRD 303 (585)
Q Consensus 225 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ 303 (585)
+...|..+++..+.+.-+++.-++++..++.....-.|+-. +.-....+-..+..+.|+|+.--..+++-+.+|||.+
T Consensus 255 Lk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~- 333 (524)
T KOG4303|consen 255 LKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQ- 333 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhH-
Confidence 35778888988888888887777776666654432222200 0000111111223345777777777888889999964
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 007913 304 IPIGLVGSMCMITAVYCLMALA 325 (585)
Q Consensus 304 ~p~ai~~~~~~~~~~y~l~~~~ 325 (585)
+-.-+-++-+...++=.+....
T Consensus 334 Fn~Ml~WsHIAAaVfK~~Fg~~ 355 (524)
T KOG4303|consen 334 FNVMLKWSHIAAAVFKVVFGML 355 (524)
T ss_pred heeeeehHHHHHHHHHHHHHHh
Confidence 4455556666666655554444
No 94
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=96.32 E-value=1.7 Score=45.46 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=17.5
Q ss_pred ccccChhHHHHHhhcccccccch
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIF 98 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~ 98 (585)
|-++|.++.+++.+++-+|.|+.
T Consensus 34 kPefS~~sW~aMlf~aG~G~gll 56 (453)
T TIGR00842 34 KPEFSTLSWLAMLFAAGMGIGLM 56 (453)
T ss_pred CCCCcchHHHHHHHHHhhhhhhh
Confidence 45688888888888877777764
No 95
>PLN00150 potassium ion transporter family protein; Provisional
Probab=96.29 E-value=2 Score=47.43 Aligned_cols=220 Identities=13% Similarity=0.143 Sum_probs=103.4
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhee---cccCCCCCCCCCc---------ChhHHHHH
Q 007913 209 LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFV---HGKTTNLDPFLPY---------GTEGVFEA 276 (585)
Q Consensus 209 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~---------g~~~~~~~ 276 (585)
+..+++++++.+..+.-+|+...++ .+..+.++-++.+...|+. ..++.-+..++|. +..+ +..
T Consensus 214 Vv~is~~ILv~LF~iQ~~GT~kVg~---~FgPIm~~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g-~~~ 289 (779)
T PLN00150 214 VTIISCVILVILFSLQRFGTHKVSF---LFAPIFLCWFFSLALIGCYNIIKWDKSVFLAFNPLYIVSFFIRNGRQG-WES 289 (779)
T ss_pred ehhhHHHHHHHHHHHHhccchhhhh---hhccHHHHHHHHHHHHHHHHHHhcCHHHHhhcCHHHHHHHHHhCCCce-EEE
Confidence 3467788888888888888765554 4555555544444444444 3334333344442 1111 123
Q ss_pred HHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhCcHHHHHH
Q 007913 277 AAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYL 356 (585)
Q Consensus 277 ~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (585)
+..++.+.+|.|+.-.=-+.. .+|.+.+|-..-+.-+.++--+-.-+....-| + +.++|+.. ...+++.+-
T Consensus 290 LG~V~L~iTGaEALyADlGHF--g~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~~p-~--~~~npFf~----~iP~~~~~P 360 (779)
T PLN00150 290 LGGIVLCMTGTEAMFADLGHF--TVKSMQIAFTSLVYPCLLLTYLGQAAYLVKHM-E--DVNDPFYR----SLPKPIYWP 360 (779)
T ss_pred ecceeeeecchhhhhccccCC--CccceeeeehhhHHHHHHHHHcchHHHHhcCc-c--cccCcHHH----hCCchhHHH
Confidence 444567778988763221221 23455444332222222221111111111111 1 12345432 233444444
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCch-hhhccCCCCC----chHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 007913 357 VSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP-WFALVHPKTQ----TPINATLLVTTLSAIIALFSSLNILSSVFS 431 (585)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~~~----~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~ 431 (585)
+.+.+.++..-+.-+.+.++=-+....-+-|.+|+ +.-|.+++.+ .|..-.++......+...+.+-+.+.+..+
T Consensus 361 ~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYG 440 (779)
T PLN00150 361 IFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLVITAGFRDTDEIGNAYG 440 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheEEecChHHHHHHhh
Confidence 44444443333333334444444555556789994 3344443322 465444433333333333456677777777
Q ss_pred HHHHHHHHHH
Q 007913 432 FSTLSIFMLM 441 (585)
Q Consensus 432 ~~~~~~~~~~ 441 (585)
++......+.
T Consensus 441 iAV~~vM~iT 450 (779)
T PLN00150 441 IAVVGVMIIT 450 (779)
T ss_pred hheehhhHHH
Confidence 7765555543
No 96
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=96.28 E-value=0.42 Score=52.09 Aligned_cols=222 Identities=17% Similarity=0.181 Sum_probs=107.3
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhee---cccCCCCCCCCCc---------ChhHHHHH
Q 007913 209 LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFV---HGKTTNLDPFLPY---------GTEGVFEA 276 (585)
Q Consensus 209 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~---------g~~~~~~~ 276 (585)
+..+++++++.+..+.-+|+...++ .+..+.++=++.+.+.|+. ..++.-+..++|. +..+ +..
T Consensus 168 Vv~it~~ILv~LF~iQ~~GT~kvg~---~FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f~~~~~~~~-~~~ 243 (688)
T TIGR00794 168 VVPISCIILVLLFLIQRFGTAKVGF---TFAPIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQFFIEYGTVG-WVS 243 (688)
T ss_pred ehhHHHHHHHHHHHHhccccHHHhh---hhhhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHHCCCce-eee
Confidence 3467777888888888888765554 4555555555444444444 3233333333332 2222 223
Q ss_pred HHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhCcHHHHHH
Q 007913 277 AAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYL 356 (585)
Q Consensus 277 ~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (585)
+..++.+.+|-|+.-.=.+.. .+|++.++-..-+.-+.++--+-.-+....-| + ...+|+... ..+|..+-
T Consensus 244 LG~V~L~iTGaEALyADmGHF--g~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~p-~--~~~NpFf~~----~P~~~~~p 314 (688)
T TIGR00794 244 LGGVVLSITGVEAMFADLGHF--GKLPIQLAWFTFVYPSLILCYIGQAAYLSKHP-E--AIKNPFFLS----IPDWALWP 314 (688)
T ss_pred ccchhheeccHhhhhcccCCC--CcccceeehHHHHHHHHHHHHcchHHHHhcCc-c--hhcCcHHHh----CchHHHHH
Confidence 445667889988763322222 23445433332222221111111111111111 1 123455432 33555554
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCch-hhhccCCC-CC---chHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 007913 357 VSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP-WFALVHPK-TQ---TPINATLLVTTLSAIIALFSSLNILSSVFS 431 (585)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~-~~---~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~ 431 (585)
+.+.+.++..-+.-+.+.++=-+....-+-|.+|+ ...|.+++ .| .|..-.++......+...+.+-+.+.+..+
T Consensus 315 ~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~la~AYG 394 (688)
T TIGR00794 315 LFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNNLGAAYG 394 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHHHHHHhh
Confidence 44444444443334444444445555667799994 34444433 22 465444433333333334456677777777
Q ss_pred HHHHHHHHHHHH
Q 007913 432 FSTLSIFMLMAI 443 (585)
Q Consensus 432 ~~~~~~~~~~~~ 443 (585)
++......+..+
T Consensus 395 iaVt~tM~iTT~ 406 (688)
T TIGR00794 395 IAVTGTFLVTTC 406 (688)
T ss_pred hhhhhhhHHHHH
Confidence 777666665443
No 97
>PLN00149 potassium transporter; Provisional
Probab=96.05 E-value=1.6 Score=48.32 Aligned_cols=223 Identities=14% Similarity=0.111 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhee---cccCCCCCCCCCcChhH--------HHHHHH
Q 007913 210 DPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFV---HGKTTNLDPFLPYGTEG--------VFEAAA 278 (585)
Q Consensus 210 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~g~~~--------~~~~~~ 278 (585)
..+++++++.+..+.-+|+...++ .+..+.++-++.+...|+. ..++.-+..+.|.-... -+..+.
T Consensus 199 v~is~~ILv~LF~~Q~~GT~kvg~---~FgPIml~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~f~~~~~~~g~~~LG 275 (779)
T PLN00149 199 VPVACIILIGLFALQHYGTHRVGF---LFAPVVLTWLLCISAIGVYNIFHWNPHVYQALSPYYMYKFLKKTQRGGWMSLG 275 (779)
T ss_pred hHHHHHHHHHHHHHhccccHHHhh---hhhhHHHHHHHHHHHHHHHHHHhcCHhHhhhcCHHHHHHHHHHCCCceeEeec
Confidence 357788888888888888765554 4555555544444444443 44444444444421111 122344
Q ss_pred HHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhCcHHHHHHHH
Q 007913 279 VVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVS 358 (585)
Q Consensus 279 ~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (585)
.++.+.+|.|+.-.=-+. -.+|.+.+|-..-+.=+.++--+-.-++...-|...-+-++|+.. ...+++.+-+.
T Consensus 276 gV~L~iTG~EALyADlGH--F~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~~~~~~pFy~----~iP~~~~~P~~ 349 (779)
T PLN00149 276 GILLCITGSEAMFADLGH--FSQLSIKIAFTSLVYPSLILAYMGQAAYLSKHHVIESDYRIGFYV----SVPEKLRWPVL 349 (779)
T ss_pred chhhcccchhhhhhcccC--CCccceeeeehhhHHHHHHHHhhhHHHHHhcCcchhccccCcHHH----hCCchhHHHHH
Confidence 556788899876332222 133555444332222222222222222222122111111235432 23344444444
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCch-hhhccCCCCC----chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 007913 359 VCALKGMTTSLLVGSLGQARYTTQIARAHMIPP-WFALVHPKTQ----TPINATLLVTTLSAIIALFSSLNILSSVFSFS 433 (585)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~~~----~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~ 433 (585)
+.+.++..-+.-+.+.++=-+....-+-|.+|+ +.-|.+++.. .|..-.++.....++...+.+-+.+.+..+++
T Consensus 350 vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGiA 429 (779)
T PLN00149 350 VIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLCLAVTVGFRDTKRLGNASGLA 429 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheeEecChHHHHHHhhhh
Confidence 444433333333334444444455556789994 3334443322 46544444333333334445667777777777
Q ss_pred HHHHHHHH
Q 007913 434 TLSIFMLM 441 (585)
Q Consensus 434 ~~~~~~~~ 441 (585)
......+.
T Consensus 430 V~~vM~iT 437 (779)
T PLN00149 430 VITVMLVT 437 (779)
T ss_pred hehHHHHH
Confidence 65555543
No 98
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=95.94 E-value=2.7 Score=45.30 Aligned_cols=222 Identities=15% Similarity=0.162 Sum_probs=104.1
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhheecc--cCCCCCCCCCc---------ChhHHHHHH
Q 007913 209 LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHG--KTTNLDPFLPY---------GTEGVFEAA 277 (585)
Q Consensus 209 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~---------g~~~~~~~~ 277 (585)
+..+++++++.+..+.-+|....++ .+..+.++=++.+.+.|+... +++-+..++|. +..+ +..+
T Consensus 143 Vvpit~~ILv~LF~iQ~~GT~~vG~---~FgPIm~vWF~~i~~~Gi~~I~~~P~Vl~AlnP~ya~~f~~~~~~~g-f~~L 218 (622)
T PRK10745 143 IVPLSIIVLTLLFMIQKHGTGMVGK---LFAPIMLTWFLTLAVLGLRSIIANPEVLHALNPMWAVHFFLEYKTVS-FFAL 218 (622)
T ss_pred cHHHHHHHHHHHHHHhccccHHHhh---hhhhHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHhCCCce-EEEe
Confidence 3467777778888888888765554 455555555544444444432 22222233332 2211 1234
Q ss_pred HHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhCcHHHHHHH
Q 007913 278 AVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLV 357 (585)
Q Consensus 278 ~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (585)
..++.+.+|-|+.-.=.+. -.+|.+.++-..-+.-+.++.-+-.-+....-| + ..++|+... ..+|..+-+
T Consensus 219 G~V~L~vTGaEALYADmGH--FG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~~p-~--~~~NpFf~~----~P~~~~~p~ 289 (622)
T PRK10745 219 GAVVLAITGVEALYADMGH--FGKFPIRLAWFTVVLPSLVLNYFGQGALLLKNP-E--AIKNPFFLL----APDWALIPL 289 (622)
T ss_pred cceeeeccchHHHhhccCC--CCccceeeeehhhHHHHHHHHhcchHHHHhcCc-h--hhcCcHHHh----CChhHHHHH
Confidence 4456777898876322222 134555544332222122221111111111111 1 124555433 334555544
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCch-hhhccCCC-CC---chHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 007913 358 SVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP-WFALVHPK-TQ---TPINATLLVTTLSAIIALFSSLNILSSVFSF 432 (585)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~-~~---~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~ 432 (585)
.+.+.++..-+..+.+.++=-+....-+-|.+|+ ...|.+++ .| .|..-.++......+...+.+-+.+.+..++
T Consensus 290 viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~~La~AYGi 369 (622)
T PRK10745 290 LILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSSNLAAAYGI 369 (622)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEecCchHHHHHhhh
Confidence 4444444443334444444445555667799994 34444433 22 4554333333332233333455677777777
Q ss_pred HHHHHHHHHHH
Q 007913 433 STLSIFMLMAI 443 (585)
Q Consensus 433 ~~~~~~~~~~~ 443 (585)
+......+..+
T Consensus 370 AVt~tM~iTT~ 380 (622)
T PRK10745 370 AVTGTMVLTSI 380 (622)
T ss_pred hheeHhHHHHH
Confidence 66555555443
No 99
>PRK09950 putative transporter; Provisional
Probab=95.94 E-value=2.9 Score=44.50 Aligned_cols=23 Identities=9% Similarity=0.125 Sum_probs=19.2
Q ss_pred ccccChhHHHHHhhcccccccch
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIF 98 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~ 98 (585)
|.++|.++.+++.+++-+|.|+.
T Consensus 81 kPefS~~sW~aMlf~aG~G~gll 103 (506)
T PRK09950 81 KPEYSTLSWLFMFICAGLGSSTL 103 (506)
T ss_pred CCCccchhHHHHHHHHhhhhHHH
Confidence 56799999999999888888764
No 100
>PLN00148 potassium transporter; Provisional
Probab=95.59 E-value=1.8 Score=47.87 Aligned_cols=220 Identities=13% Similarity=0.130 Sum_probs=104.4
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhe---ecccCCCCCCCCCc---------ChhHHHHH
Q 007913 209 LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGF---VHGKTTNLDPFLPY---------GTEGVFEA 276 (585)
Q Consensus 209 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~~---------g~~~~~~~ 276 (585)
+..+++++++.+..+.-+|+...++ .+..+.++-++.+...|+ .+.++.-+..++|. +..+ +..
T Consensus 197 vv~is~~ILv~LF~vQ~~GT~kVg~---~FgPIm~lWf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g-~~~ 272 (785)
T PLN00148 197 LVLLACVILVGLFALQHCGTHRVAF---MFAPIVIIWLLSIGSIGLYNIIHWNPKIIHALSPYYIIKFFRVTGKDG-WIS 272 (785)
T ss_pred ehhHHHHHHHHHHHHhccccHHHHh---hhhhHHHHHHHHHHHHHHHHHHhcCHHHhhhcCHHHHHHHHHhCCCce-EEe
Confidence 3467778888888888888765554 455555554444444444 34444434444442 2111 123
Q ss_pred HHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhCcHHHHHH
Q 007913 277 AAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYL 356 (585)
Q Consensus 277 ~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (585)
+..++.+.+|.|+.-.=-+.. .+|.+.+|-..-+.=+.++--+-.-+....-| + +.++|+.. ...++..+-
T Consensus 273 LGgV~L~iTGaEALyADlGHF--g~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~~p-~--~~~npFf~----~iP~~~~~P 343 (785)
T PLN00148 273 LGGILLSITGTEAMFADLGHF--TAASIRLAFATVIYPCLVVQYMGQAAFLSKNI-P--SIPNSFYD----SIPDPVFWP 343 (785)
T ss_pred ecchheeccchhhhhhhccCC--CccceEEeeeehHHHHHHHHHcchHHHHhcCc-c--cccCcHHH----hCCchhHHH
Confidence 445567788988763322221 23555444332222222221111222222112 1 12345433 233444444
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCch-hhhccCCCC-C---chHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 007913 357 VSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP-WFALVHPKT-Q---TPINATLLVTTLSAIIALFSSLNILSSVFS 431 (585)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~~-~---~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~ 431 (585)
+.+.+.++..-+.-+.+.++=-+....-+-|.+|+ +.-|.+++. | .|..-.++.....++...+.+-+.+.+..+
T Consensus 344 ~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~la~AYG 423 (785)
T PLN00148 344 VFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAVTIGFRDTTLIGNAYG 423 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHhheeeccchhHHHhhh
Confidence 44433333333333333344344445556789994 344444332 2 465544444443334444456677777777
Q ss_pred HHHHHHHHHH
Q 007913 432 FSTLSIFMLM 441 (585)
Q Consensus 432 ~~~~~~~~~~ 441 (585)
++......+.
T Consensus 424 iAV~~vM~iT 433 (785)
T PLN00148 424 LACMTVMFIT 433 (785)
T ss_pred hheeeHHHHH
Confidence 6665544443
No 101
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=95.47 E-value=4.1 Score=42.96 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcC-CCchhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHH---HH
Q 007913 355 YLVSVCALKGMTTSLLVGSLGQARYTTQIARAH-MIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSS---VF 430 (585)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg-~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~---~~ 430 (585)
.+..+..++....-..+...+.+-++-.++..| .-|+..-|+- +++ +.++++..+.+.+.++.+.+ +.
T Consensus 405 ~v~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~~~~pp~~~r~~-------W~v-~~~~ia~~lL~~ggl~aLqt~~ii~ 476 (537)
T COG1292 405 TLTSLLALLVIAIFFVTSADSGSYVLAMISSRGGEDPPRWVRVF-------WGV-LIGLIAAVLLLIGGLEALQTAAIIT 476 (537)
T ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHhccCCCCChHHHHHH-------HHH-HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 333343333334444556667777787777665 2233333321 333 34444555555554444444 44
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 007913 431 SFSTLSIFMLMAIALLVRRYYE 452 (585)
Q Consensus 431 ~~~~~~~~~~~~~~~l~~r~~~ 452 (585)
...+.+..++.+.+.++--+++
T Consensus 477 alPF~~vll~~~~sl~k~l~~d 498 (537)
T COG1292 477 ALPFSLVLLVMMFSLIKDLKQD 498 (537)
T ss_pred HccHHHHHHHHHHHHHHHHHhh
Confidence 4555666666777777644443
No 102
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=95.31 E-value=2.2 Score=44.11 Aligned_cols=302 Identities=11% Similarity=0.069 Sum_probs=135.4
Q ss_pred CccccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhH---
Q 007913 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFL--- 148 (585)
Q Consensus 73 ~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~--- 148 (585)
++-+|+.|+|+.+..=.+..+..+.+...+..++..-.+. .+.+++++=++.......-+ +.|..|+-.
T Consensus 50 ~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~~~f~~lns-------~~G~~yhIsFpv 122 (572)
T KOG2466|consen 50 PPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFTAIFLVLNS-------RPGSDYHISFPV 122 (572)
T ss_pred CcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHHHHHHHHcc-------CCCcccccceee
Confidence 4457899999999887777777777766666654312222 55555554444333322222 234445433
Q ss_pred --HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------cCCccchhcccccCCCCCcchHHHHHHHHH-
Q 007913 149 --RVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDS------NNSDLLRFKVDCFADGFNLLDPVAVLILLV- 219 (585)
Q Consensus 149 --~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 219 (585)
+..||=+.+-.--..-.+..++--...+...++.++.++.+ +.++++. -+.... -..++..+..+
T Consensus 123 ~sR~sFGiygS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~~~hipntl~-----~~~~tt-~e~i~FfIFwv~ 196 (572)
T KOG2466|consen 123 LSRSSFGIYGSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKSFSHIPNTLG-----KPGTTT-YEFIGFFIFWVA 196 (572)
T ss_pred eeeeehhhhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhhhhcCccccC-----CCCCch-HHHHHHHHHHHH
Confidence 22444333322222333333344444555555555555432 1112111 011111 12344333333
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhheecccC--C-CCCCCCCcChhHHHHHHHHHHHHhhcHhHHhhhh--
Q 007913 220 CNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKT--T-NLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMA-- 294 (585)
Q Consensus 220 ~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~-~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~-- 294 (585)
...+.+++.....++...-.+......+.+.+..+...+. + +..+-...+..-.+.-+-.+...+.++.....-.
T Consensus 197 s~~~~~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~pD 276 (572)
T KOG2466|consen 197 SLPFYWFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNAPD 276 (572)
T ss_pred hhheeeccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhccCch
Confidence 3334445666666665555555545555555555544332 1 1112222232222223334455555655444433
Q ss_pred --hhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhccccccccc---ccHHHHHHH-------HhCcHHHHHHHHHHHH
Q 007913 295 --EETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM---NAAYSIAFR-------QIGMNWAKYLVSVCAL 362 (585)
Q Consensus 295 --~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~---~~~~~~~~~-------~~~~~~~~~~~~~~~~ 362 (585)
.=.|+|. +.+..-+.++-+...+..+..++. ....+.+-. -+|+ +++. ..|...+..++..+..
T Consensus 277 FsRF~ksp~-a~~~~Ql~alp~~~~l~~liGVlv--~sa~~~iYG~~~W~Pl-dil~~~l~~~y~~G~RAgvFfi~~~f~ 352 (572)
T KOG2466|consen 277 FSRFAKSPN-AIWWGQLIALPLPFGLTPLIGVLV--TSASKIIYGTNYWSPL-DILNQWLDTNYSAGARAGVFFIGFGFA 352 (572)
T ss_pred hHhhcCCCC-ccchhhhhhhhhhhhhhhheeeEe--hhhhhhhhcccccCHH-HHHHHHhccccccccchhhhHHHHHHH
Confidence 3345552 223333332222222111111110 001111111 1343 3333 2355577778888888
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHhcCCCchhhhc
Q 007913 363 KGMTTSLLVGSLGQARYTTQIARAHMIPPWFAL 395 (585)
Q Consensus 363 ~~~~~~~~~~~~~~sR~l~~~ardg~lP~~~~~ 395 (585)
++.++...+.-..++ ++.-.+++||++.-
T Consensus 353 laql~~NISan~vaa----gnDl~~L~PkyinI 381 (572)
T KOG2466|consen 353 LAQLGTNISANSVAA----GNDLSALLPKYINI 381 (572)
T ss_pred HHHHhcchhcccccc----chhhHhhCcceEEe
Confidence 888876554322222 23344688888754
No 103
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=95.29 E-value=5.4 Score=43.20 Aligned_cols=97 Identities=16% Similarity=0.210 Sum_probs=49.8
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHhheec-cc--------CCCCCCCCCcChhHHHHHHHHHHHHh-hcHhHHhhh
Q 007913 224 AMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVH-GK--------TTNLDPFLPYGTEGVFEAAAVVYWSY-TGFDMVATM 293 (585)
Q Consensus 224 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~--------~~~~~~~~~~g~~~~~~~~~~~~~~~-~G~e~~~~~ 293 (585)
...|+|..+|+......+-.+.++++.+-++.. +. ..+++...+ ..-+..++..++|+. .|+.....+
T Consensus 195 i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~--~~vW~~A~~Q~ffsl~ig~G~~it~ 272 (523)
T PF00209_consen 195 IWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLD--PKVWIAALGQVFFSLSIGFGIMITY 272 (523)
T ss_dssp TTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTS--HHHHHHHHHHHHHHTTTTSSHHHHH
T ss_pred eEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhH--HHHHHHHHHHHhhccCCCcceEEEE
Confidence 356888887776665543333333333332211 00 112222211 233566777888887 577777777
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 007913 294 AEETKKPSRDIPIGLVGSMCMITAVYCLMA 323 (585)
Q Consensus 294 ~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~ 323 (585)
+.-.|+ ++|++|...........+.++..
T Consensus 273 ~Sy~~~-~~n~~~~a~~v~~~~~~~sllag 301 (523)
T PF00209_consen 273 GSYNKF-KNNIFRDALIVAFINTLVSLLAG 301 (523)
T ss_dssp HTTS-T-TS-SHHHHHHHHHHHHHHHHTTG
T ss_pred cCcCCC-CccccccceEEEcCchhhhHhHH
Confidence 776665 57888866655555555444433
No 104
>PRK09928 choline transport protein BetT; Provisional
Probab=94.29 E-value=10 Score=41.70 Aligned_cols=91 Identities=7% Similarity=-0.045 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHH---HHHHH
Q 007913 355 YLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNIL---SSVFS 431 (585)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l---~~~~~ 431 (585)
.++.+..++..+....++.-+++-++-.++..|.-|+ .-.|+...=.|++.+ ++++..+...+.++.+ .-+.+
T Consensus 409 ~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~---~~pp~~~RifW~v~i-g~la~~LL~~GGL~aLQt~sii~a 484 (679)
T PRK09928 409 TFSASVATITGLLFYVTSADSGALVLGNFTSKLKDIN---SDAPNWLRVFWSVAI-GLLTLGMLMTNGISALQNTTVIMG 484 (679)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCCC---CCCCcceeeHHHHHH-HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3334444444444455555666777766666553221 111122223345543 3334444444444444 44445
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007913 432 FSTLSIFMLMAIALLVRR 449 (585)
Q Consensus 432 ~~~~~~~~~~~~~~l~~r 449 (585)
+...+..++.+.+.++.-
T Consensus 485 lPf~~I~ll~~~sl~k~l 502 (679)
T PRK09928 485 LPFSFVIFFVMAGLYKSL 502 (679)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555566666666666533
No 105
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=92.04 E-value=0.044 Score=51.49 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=0.0
Q ss_pred ccCCCCCchHHHHHHHHHH
Q 007913 395 LVHPKTQTPINATLLVTTL 413 (585)
Q Consensus 395 ~~~~~~~~P~~ai~~~~~i 413 (585)
|.+||--.|..++.+..++
T Consensus 13 ~r~pr~p~~~a~l~~~~ll 31 (381)
T PF05297_consen 13 RRPPRCPQPHASLLFGLLL 31 (381)
T ss_dssp -------------------
T ss_pred CCCCCCCCcchhHHHHHHH
Confidence 4566666676666554443
No 106
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=91.56 E-value=3.1 Score=43.50 Aligned_cols=68 Identities=19% Similarity=0.127 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCCccccc-chHHHHHHHHHHHHHh---cCC-HHHHHHHHHHHHHHHHHHHHhh
Q 007913 494 VTIAPWFLGTLGMALLPKQRVPKLWGVPLV-PWLPSLSIAMNLFLIG---SLG-YLAFLRFIICSAVMLVYYLLVG 564 (585)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~i~~~~y~~~~ 564 (585)
.........+.++..+.+++.+|++|+|.. |.+- ++.+++++. ..+ .....+....++.|+.+|+...
T Consensus 368 ~l~~~l~~~gll~lR~k~p~~~rPiKvpl~~p~~~---~~~~i~lvvip~~~~~~~~~~ig~~i~l~G~~~Y~~~i 440 (479)
T KOG1287|consen 368 WLFRGLSMAGLLWLRWKHPPLPRPIKVPLFIPILF---LLICIFLVVIPIISDFPVETLIGIGIILSGVPFYFLFI 440 (479)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCCEeeeeehHHHH---HHHHHHHhheeeeecCCccchhHHHHHHHhhhhheEEE
Confidence 344445556677777778889999999864 4433 333333333 222 2224566777788898887654
No 107
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=91.50 E-value=22 Score=37.97 Aligned_cols=23 Identities=9% Similarity=0.231 Sum_probs=19.4
Q ss_pred ccccChhHHHHHhhcccccccch
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIF 98 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~ 98 (585)
|.+++.++.+++.+++-+|.|+.
T Consensus 83 kPefs~~sW~aMlf~aG~G~gll 105 (504)
T PRK03356 83 KPEFSTASWIFMMFASCTSAAVL 105 (504)
T ss_pred CCCccchHHHHHHHHHhhhhhhh
Confidence 66799999999999888888874
No 108
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=90.27 E-value=28 Score=37.06 Aligned_cols=228 Identities=16% Similarity=0.209 Sum_probs=100.9
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhheecc--cCCCCCCCCCc---------ChhHHHHHH
Q 007913 209 LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHG--KTTNLDPFLPY---------GTEGVFEAA 277 (585)
Q Consensus 209 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~---------g~~~~~~~~ 277 (585)
+..+++++++.+..+.-+|....++ ++..+.++-++.+...|+.+. +++-+...+|. ++.+++ .+
T Consensus 148 Vvpitl~IL~~LF~iQ~~GT~~Vg~---~FGPVm~lWF~~l~~~Gl~~i~~~p~IL~AiNP~yAi~fl~~~~~~gf~-vL 223 (627)
T COG3158 148 VVPITLIILVLLFLIQRFGTGRVGK---LFGPVMLLWFLALAVLGLINIIDDPEILRAINPYYAVHFLLEEGFVGFF-VL 223 (627)
T ss_pred cHHHHHHHHHHHHHHhcccchhhhh---hhccHHHHHHHHHHHHHHHHHhcCHHHHHHhChHHHHHHHHhCCceEEE-Ee
Confidence 4467777788888888888765554 566666666666666666542 22222222231 222211 12
Q ss_pred HHHHHHhhcHhHHhhhhhhhcCC-CCChhhHHHHHHHHHHHHHHHHHHHHHhccccccc-ccccHHHHHHHHhCcHHHHH
Q 007913 278 AVVYWSYTGFDMVATMAEETKKP-SRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEI-DMNAAYSIAFRQIGMNWAKY 355 (585)
Q Consensus 278 ~~~~~~~~G~e~~~~~~~E~k~p-~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 355 (585)
...+.+.+|-|+.-. ++-+= +|.+-+|=..-..= .++.++.-.+..--.+. ...+|+.. ....|...
T Consensus 224 GaVfLavTGaEALYA---DmGHfGr~pI~~AWf~vv~P----~L~LNY~GQGA~vL~~p~a~~npFF~----~~P~~ali 292 (627)
T COG3158 224 GAVFLAVTGAEALYA---DMGHFGRKPIRVAWFFVVLP----CLLLNYFGQGALLLSNPEAIGNPFFL----LAPDWALI 292 (627)
T ss_pred eeeeeeeccHHHHHh---hccccCCccHHHHHHHHHHH----HHHHHHccccceeccCcccccCcHHH----hChhhHHH
Confidence 334566788887532 33332 34544332211110 12222221111000010 11235332 23344333
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCch-hhhccCCC-CC---chHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 007913 356 LVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP-WFALVHPK-TQ---TPINATLLVTTLSAIIALFSSLNILSSVF 430 (585)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~-~~---~P~~ai~~~~~i~~~~~~~~~~~~l~~~~ 430 (585)
-+.+.+..+..-+..+.+.++=-+....-|-|++|+ ...+.+++ .| .|..-.++...+..+..-+.+-..+.+..
T Consensus 293 P~viLAT~ATVIASQAvISGaFSLtrQAi~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~~S~~LAaAY 372 (627)
T COG3158 293 PLVILATAATVIASQAVISGAFSLTRQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFGSSSNLAAAY 372 (627)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhCCCCceEEEecCCcccceEEehHHHHHHHHHHhheeeEecChHHHHHhh
Confidence 333322222222222222233233344457799994 34444433 22 46655544444443333344456666666
Q ss_pred HHHHHHHHHHHHH-HHHHHHhc
Q 007913 431 SFSTLSIFMLMAI-ALLVRRYY 451 (585)
Q Consensus 431 ~~~~~~~~~~~~~-~~l~~r~~ 451 (585)
+++......+..+ ...+.|++
T Consensus 373 GiAVTgtM~iTt~L~~~~~~~~ 394 (627)
T COG3158 373 GIAVTGTMVITTILLTVVMRKK 394 (627)
T ss_pred ChheeehhHHHHHHHHHHHHHh
Confidence 6655544444433 33444544
No 109
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=90.18 E-value=22 Score=35.78 Aligned_cols=245 Identities=11% Similarity=0.073 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHH-HHHHHhhhhccC------CCchhHhHHHH-hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007913 115 LSYLASGLSALLSA-FCYTEFAVEIPV------AGGSFSFLRVE-LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASM 186 (585)
Q Consensus 115 ~~~ll~~~~~~~~a-~~~~el~s~~P~------~Gg~y~~~~~~-~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~ 186 (585)
++|++-+.+..+++ +++.-++.++.. +=...++.+.. -+++.-++.+....+.....+...-.+.+..+...
T Consensus 72 lgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~ 151 (473)
T COG4145 72 LGWVLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETA 151 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45666666665543 455555544431 22344555544 56788899999888888888888888889988888
Q ss_pred hcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhheec----------
Q 007913 187 IDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVH---------- 256 (585)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---------- 256 (585)
.+ .+-. ...-+...........-|.|....-..+-..+.++.-+++.+..+..
T Consensus 152 ~g-idY~----------------tgL~ifa~~V~iYt~fGGFRAvvltD~IQG~vmligtv~Lf~~~i~~~GG~~~av~t 214 (473)
T COG4145 152 LG-IDYT----------------TGLLIFAVSVAIYTAFGGFRAVVLTDTIQGLVMLIGTVVLFVGVIYAGGGLSNAVET 214 (473)
T ss_pred HC-CCch----------------hhHHHHHHHHHHHHhhcceeeeehHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 77 2210 01111111222233345666665544444444444333333322211
Q ss_pred ---ccCCCCCCCCCcC--hhHHHHHH-HHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHH-H--
Q 007913 257 ---GKTTNLDPFLPYG--TEGVFEAA-AVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALAL-T-- 327 (585)
Q Consensus 257 ---~~~~~~~~~~~~g--~~~~~~~~-~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~-~-- 327 (585)
.|++-..|...+. ...++..+ ....+...|.-....-.-..|| +|.+.++|+.+..++.++-+.+-++- .
T Consensus 215 l~~iDp~lv~P~~~~~~l~~~Fm~Sfwilv~~gvlglP~t~vr~ia~kD-skaih~gmiigt~vi~il~~gmhl~G~~gr 293 (473)
T COG4145 215 LTTIDPGLVTPQGADDILDPPFMASFWILVCFGVLGLPHTAVRCIAFKD-SKAIHRGMIIGTIVIAILMLGMHLAGALGR 293 (473)
T ss_pred HHhCCccccCCCCCcccccchHHHHHHHHHHHHHhcCcHHHHHHHhccc-hhHHhcCcchHHHHHHHHHHHHHHhhhhhh
Confidence 1111112221111 11222222 1223334444333333344577 47788888888877776655544431 1
Q ss_pred hcccccccccccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 007913 328 MMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQAR 378 (585)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 378 (585)
.+.| |-...|.-++..+-+...|....++..+.+.+.+++.++.+.-.|-
T Consensus 294 aViP-dlt~~D~Vip~lalkvlpp~~agifl~apmaAiMSTIds~L~~~ss 343 (473)
T COG4145 294 AVIP-DLTVVDLVIPTLALKVLPPFAAGIFLAAPMAAIMSTINSQLLQSSS 343 (473)
T ss_pred hhcC-CCCccchhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223 2222444555666667777777777777777888887776655544
No 110
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=88.50 E-value=33 Score=35.47 Aligned_cols=42 Identities=17% Similarity=0.102 Sum_probs=30.1
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 007913 341 YSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQ 382 (585)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 382 (585)
..+..+..-+++...++.++.+.+-.+|..+..++..=+...
T Consensus 282 ~~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~g 323 (390)
T TIGR01197 282 IGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEG 323 (390)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344455566678889999999988888888877765544443
No 111
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=87.67 E-value=16 Score=39.47 Aligned_cols=222 Identities=14% Similarity=0.138 Sum_probs=102.9
Q ss_pred CchhHhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHH-
Q 007913 142 GGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVC- 220 (585)
Q Consensus 142 Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 220 (585)
...|.|.+..|++....+....+.+..........+.-+..++...+ .+ .+.....+..++
T Consensus 108 ~~~~eYl~~Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg-~~-----------------~~l~~~~~~~ic~ 169 (585)
T KOG2349|consen 108 TTMYEYLEKRFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTG-IN-----------------LYLIVVILGLICV 169 (585)
T ss_pred eehhHHHHHHhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhc-cC-----------------ceeehHHHHHHHH
Confidence 47899999999998655555555555555444444444444444443 10 001111122222
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhheeccc-------------CCCCC-CCCC-----cChhHHHHHHHHHH
Q 007913 221 NGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGK-------------TTNLD-PFLP-----YGTEGVFEAAAVVY 281 (585)
Q Consensus 221 ~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~~-~~~~-----~g~~~~~~~~~~~~ 281 (585)
.....-|.|..-+...+=+.+.+...+.+++.+..... ..|+. .+.. +.+..++.|-....
T Consensus 170 ~YT~~GGlkaVi~TDv~Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~ 249 (585)
T KOG2349|consen 170 FYTALGGLKAVIWTDVVQTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMW 249 (585)
T ss_pred HHHHhcCeeEEEEhhHHHHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHH
Confidence 22233466666665666666666666666665543211 01111 1221 12223555544555
Q ss_pred HHhhcHhHHh-hhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHh-cccccc--------cc-cccHHHHHHHHhCc
Q 007913 282 WSYTGFDMVA-TMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTM-MVKYTE--------ID-MNAAYSIAFRQIGM 350 (585)
Q Consensus 282 ~~~~G~e~~~-~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~-~~~~~~--------~~-~~~~~~~~~~~~~~ 350 (585)
..+.|.+... +----.|+ .|+..+++........+...+....-.. ..-+.+ .. +|.-.+.......+
T Consensus 250 l~~~~vnQ~~VQR~lsl~s-lk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~Cdpl~~g~v~~~D~~~P~fV~d~~~ 328 (585)
T KOG2349|consen 250 LSYYGVNQLIVQRYLSLPS-LKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTDCDPLCGGLVGCPDQLLPLFVMDLMG 328 (585)
T ss_pred HHHHhhhHHHHhHHhcccc-HHHhhhhhhhhhhHHHHHHHhhcccceeEeeecccCCcccccccCCccccccHHHHHhcC
Confidence 5556655432 21112222 2444555555544444443333222110 000111 11 22222333333332
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 007913 351 --NWAKYLVSVCALKGMTTSLLVGSLGQARYTTQ 382 (585)
Q Consensus 351 --~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 382 (585)
+...-++..++..+.++++.+.+.+.|-+.+.
T Consensus 329 ~~pGl~GLfia~vfsA~LSsLSS~~NS~s~v~~e 362 (585)
T KOG2349|consen 329 HLPGLRGLFIAVVFSAALSSLSSIFNSLSTVFLE 362 (585)
T ss_pred CCCCccchhHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 33444555566666777777777778877664
No 112
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=80.95 E-value=68 Score=34.57 Aligned_cols=57 Identities=14% Similarity=0.276 Sum_probs=30.4
Q ss_pred ccCCCCCCcccccc----hHHHHHHHHHHHHHhc-------------CCHHHHHH--HHHHHHHHHHHHHHhhccc
Q 007913 511 KQRVPKLWGVPLVP----WLPSLSIAMNLFLIGS-------------LGYLAFLR--FIICSAVMLVYYLLVGLHA 567 (585)
Q Consensus 511 ~~~~~~~~~~~~~p----~~~~~~~~~~~~~~~~-------------~~~~~~~~--~~~~~~i~~~~y~~~~~~~ 567 (585)
+++.+|+||.|..+ ....++++.+++.+.. ++|..... ++++.++++++|..++||+
T Consensus 389 ~p~~~rpf~~pg~~~~~~i~~~~~~~~~~~~~v~~~~Pp~~~~~~~~~~y~~~~~~~~~~~~~~~~~~y~~~~~~~ 464 (507)
T TIGR00910 389 HPDLKRTFNIPGGIGGKLIIAGIGFLLSIFAFFISFLPPANIAGDETDMYQEILLISFLVTAALPFIIYALHDKKG 464 (507)
T ss_pred cCCCCCCeEecCCccchhhHHHHHHHHHHHHHheeeeCCCccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55677889998654 3445555555544431 12222211 1234556677776666554
No 113
>PTZ00206 amino acid transporter; Provisional
Probab=79.83 E-value=83 Score=33.51 Aligned_cols=56 Identities=11% Similarity=0.135 Sum_probs=43.0
Q ss_pred cHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCchhhh
Q 007913 339 AAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFA 394 (585)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~~~~ 394 (585)
..+.++.+...++++..++.+..++..++++.+++...+..+...-++...|+++.
T Consensus 121 ~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~ 176 (467)
T PTZ00206 121 RTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLK 176 (467)
T ss_pred CCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 35677777766789999999999999999999999988888776655444455544
No 114
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=75.12 E-value=1.2e+02 Score=32.42 Aligned_cols=97 Identities=16% Similarity=-0.005 Sum_probs=58.1
Q ss_pred ChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHHH
Q 007913 80 TWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYI 159 (585)
Q Consensus 80 ~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~ 159 (585)
+.+-++..=+.++.|+|..+.|-..++- +=+.+.+..+++++++-.+-=-+.-+.|.--+.-+.-+.+++.+|+..+.+
T Consensus 53 nk~vlfGhHFaaIAGAGPivGPvlAAq~-G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~~ 131 (575)
T COG1966 53 NKWVLFGHHFASIAGAGPIVGPALAAQY-GWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKVF 131 (575)
T ss_pred CchhhhHHHHHHHhccCcchhHHHHHHh-cCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHHH
Confidence 3345566667778899998887665432 424445545666666666554444444433333356677788899988887
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007913 160 AAGNILLEAVVGAAGLAR 177 (585)
Q Consensus 160 ~g~~~~l~~~~~~a~~~~ 177 (585)
.....++--+...+..+.
T Consensus 132 ~~~~~l~iliiv~Avfa~ 149 (575)
T COG1966 132 FLLLALILLILVGAVFAA 149 (575)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 766554444444444333
No 115
>PHA03049 IMV membrane protein; Provisional
Probab=73.91 E-value=6.1 Score=28.53 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHhhcccccchh
Q 007913 547 LRFIICSAVMLVYYLLVGLHATYDVA 572 (585)
Q Consensus 547 ~~~~~~~~i~~~~y~~~~~~~~~~~~ 572 (585)
...+.+.++|++.|-.|.|++..+..
T Consensus 7 l~iICVaIi~lIvYgiYnkk~~~q~~ 32 (68)
T PHA03049 7 LVIICVVIIGLIVYGIYNKKTTTSQN 32 (68)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCC
Confidence 35577888999999999887654433
No 116
>COG4146 Predicted symporter [General function prediction only]
Probab=69.94 E-value=1.3e+02 Score=30.49 Aligned_cols=46 Identities=15% Similarity=-0.011 Sum_probs=35.7
Q ss_pred chhHhHHHHhchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhc
Q 007913 143 GSFSFLRVELGDFVAYIAAGNILLEAV-VGAAGLARSWSSYLASMID 188 (585)
Q Consensus 143 g~y~~~~~~~g~~~g~~~g~~~~l~~~-~~~a~~~~~~~~~~~~~~~ 188 (585)
-.-++.++.|.+...-+...++.++|. +..+....+.+..++++++
T Consensus 104 TIPdFlE~RfD~~TR~Iis~lFLi~y~~~flPtvLYsGAla~nsiF~ 150 (571)
T COG4146 104 TIPDFLEERFDKTTRMIISFLFLIAYGVCFLPTVLYSGALALNSIFH 150 (571)
T ss_pred cchHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHhhhhc
Confidence 456889999999999999988888775 4456666677777777775
No 117
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=68.97 E-value=9.3 Score=27.78 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHhhcccccchhh
Q 007913 547 LRFIICSAVMLVYYLLVGLHATYDVAH 573 (585)
Q Consensus 547 ~~~~~~~~i~~~~y~~~~~~~~~~~~~ 573 (585)
...+.+.++|++.|-.|.|++..+.+.
T Consensus 7 Li~ICVaii~lIlY~iYnr~~~~q~~~ 33 (68)
T PF05961_consen 7 LIIICVAIIGLILYGIYNRKKTTQNTN 33 (68)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCCC
Confidence 355778889999999998876554433
No 118
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=67.47 E-value=99 Score=28.13 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=25.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 007913 399 KTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFM 439 (585)
Q Consensus 399 ~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~ 439 (585)
..+.|.+...+.+++.+++..+.-++...+.......+...
T Consensus 14 ~l~~~w~~~l~~Gv~lii~Gl~~l~~P~~s~~~l~~~vG~~ 54 (185)
T COG3247 14 MLKKPWWWVLLLGVLLIILGLLALFNPAISTVALVYVVGIL 54 (185)
T ss_pred hhcCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34567777888888887777775555555555544444333
No 119
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=66.57 E-value=2.1e+02 Score=31.65 Aligned_cols=60 Identities=22% Similarity=0.310 Sum_probs=38.1
Q ss_pred ChhHHHHHhhcccccccchhccHHhHhhccChhHHHH----HHHHHHHHHHHHHHHHHhhhhcc
Q 007913 80 TWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLS----YLASGLSALLSAFCYTEFAVEIP 139 (585)
Q Consensus 80 ~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~----~ll~~~~~~~~a~~~~el~s~~P 139 (585)
+..+.+.-.++..+|.|-+.......-..||.+-++- .++.|+..+..=+++++..++-|
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~~g~ 102 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTSQGP 102 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhcCCh
Confidence 6678888889999999998877766666566543333 33344445555556666554433
No 120
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=65.57 E-value=10 Score=31.82 Aligned_cols=19 Identities=16% Similarity=0.328 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhhcccc
Q 007913 550 IICSAVMLVYYLLVGLHAT 568 (585)
Q Consensus 550 ~~~~~i~~~~y~~~~~~~~ 568 (585)
++..++.+++|++.++||+
T Consensus 76 GvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 76 GVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 4444556677766554444
No 121
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=63.81 E-value=28 Score=27.12 Aligned_cols=20 Identities=15% Similarity=0.130 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 007913 548 RFIICSAVMLVYYLLVGLHA 567 (585)
Q Consensus 548 ~~~~~~~i~~~~y~~~~~~~ 567 (585)
+++..+.+|.+.|-.|+|+=
T Consensus 53 I~giil~lG~~i~s~ygr~C 72 (92)
T PF05767_consen 53 ILGIILTLGIVIFSMYGRYC 72 (92)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 44677789999998888754
No 122
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=61.19 E-value=2e+02 Score=29.39 Aligned_cols=101 Identities=17% Similarity=-0.022 Sum_probs=62.5
Q ss_pred cChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHH
Q 007913 79 LTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVA 157 (585)
Q Consensus 79 l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g 157 (585)
.+.+-++..=+.++.|.|-...|-..+ . =|+. +++..++++++.-.+-=-.+-+.|.--+.-+.-.-+++..||..+
T Consensus 52 ~~~~vlfghhf~sIAGaGPI~GPi~aa-~-~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~ 129 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAGAGPIVGPILAA-Q-FGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAK 129 (376)
T ss_pred CchHHhhHHHHHHHhccccchHHHHHH-H-hcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHH
Confidence 345566677777888999887776553 2 5655 555455566665555444444444333333667777889999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 007913 158 YIAAGNILLEAVVGAAGLARSWSS 181 (585)
Q Consensus 158 ~~~g~~~~l~~~~~~a~~~~~~~~ 181 (585)
.+..+..++..+...+......++
T Consensus 130 ~lf~~f~~~~lilV~avF~~v~a~ 153 (376)
T PF02554_consen 130 KLFLIFIFFLLILVIAVFADVVAN 153 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888776666655555554443333
No 123
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=56.13 E-value=2.4e+02 Score=28.86 Aligned_cols=56 Identities=11% Similarity=-0.066 Sum_probs=33.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 007913 399 KTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDV 455 (585)
Q Consensus 399 ~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~ 455 (585)
|...-.-+.+...+++....-. ....+.........+...+..+-.++.|+|+++.
T Consensus 308 ~~~~~~~~~~~pl~~a~~~p~~-~~~~l~~~G~~~~~~~~~~p~l~~~~~r~~~~~~ 363 (381)
T TIGR00837 308 RFKTGLLTFLPPLVFALFYPEG-FLYAIGYAGLAATIWAVIIPALLAWKARKKFPNA 363 (381)
T ss_pred CchhhhhhHHhHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4555555555555555433222 2344444556677777888888888899876653
No 124
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=54.91 E-value=2.3e+02 Score=28.90 Aligned_cols=22 Identities=9% Similarity=0.200 Sum_probs=16.3
Q ss_pred ccccchHHHHHHHHHHHHHhcC
Q 007913 520 VPLVPWLPSLSIAMNLFLIGSL 541 (585)
Q Consensus 520 ~~~~p~~~~~~~~~~~~~~~~~ 541 (585)
....+..|+++++....++...
T Consensus 286 s~~~~L~PV~a~llg~l~LgE~ 307 (358)
T PLN00411 286 AIFKPLSILIAVVMGAIFLNDS 307 (358)
T ss_pred HHHHhHHHHHHHHHHHHHhCCC
Confidence 3446788999999888877654
No 125
>TIGR00930 2a30 K-Cl cotransporter.
Probab=53.79 E-value=4.3e+02 Score=31.09 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHhHHhhhc
Q 007913 461 LVKFLVCLTVVVASSIGITAFW 482 (585)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~ 482 (585)
..++++.+++++|+.+++..-|
T Consensus 498 ~~~~~sllG~l~c~~lmf~i~w 519 (953)
T TIGR00930 498 YHWWLSLLGASLCCAIMFLISW 519 (953)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 3457888999999888777654
No 126
>PRK11056 hypothetical protein; Provisional
Probab=53.42 E-value=1.3e+02 Score=24.93 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhhccc
Q 007913 551 ICSAVMLVYYLLVGLHA 567 (585)
Q Consensus 551 ~~~~i~~~~y~~~~~~~ 567 (585)
..+.+.++.|..++.+.
T Consensus 97 ~il~~~L~~Wi~~kl~~ 113 (120)
T PRK11056 97 AVLSVILVFWIGRKLRN 113 (120)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33445556665554443
No 127
>PHA03048 IMV membrane protein; Provisional
Probab=50.13 E-value=75 Score=24.68 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 007913 548 RFIICSAVMLVYYLLVGLHAT 568 (585)
Q Consensus 548 ~~~~~~~i~~~~y~~~~~~~~ 568 (585)
+.+.++.+|++.|-.|+|+=+
T Consensus 52 Ilgivl~lG~~ifsmy~r~C~ 72 (93)
T PHA03048 52 VLGIVMTIGMLIYSMWGRYCT 72 (93)
T ss_pred HHHHHHHHHHHHHHHHhcccC
Confidence 446777899999988887543
No 128
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=47.52 E-value=3.6e+02 Score=28.36 Aligned_cols=76 Identities=12% Similarity=0.177 Sum_probs=56.7
Q ss_pred HhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHh
Q 007913 146 SFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAM 225 (585)
Q Consensus 146 ~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 225 (585)
..+.+.+|+....+.+...+++...+......+.++++...++ .. ...+..++.++...+..
T Consensus 269 ~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-is-----------------Y~~~v~i~~l~S~~lSn 330 (439)
T PRK15433 269 AYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-LS-----------------YRTLVFILGGFSMVVSN 330 (439)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-Cc-----------------HHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999888754 11 12556666777777777
Q ss_pred hhhhhhhHHHHHHH
Q 007913 226 SGTRRSSWLNWISS 239 (585)
Q Consensus 226 ~g~~~~~~~~~~~~ 239 (585)
.|.+..-++..=..
T Consensus 331 ~G~~~II~~s~PiL 344 (439)
T PRK15433 331 LGLSQLIQISVPVL 344 (439)
T ss_pred hHHHHHHHHHHHHH
Confidence 88766655544333
No 129
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=46.21 E-value=4.3e+02 Score=28.84 Aligned_cols=114 Identities=15% Similarity=0.218 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhheecccCCCC--CCCCCc-----ChhHHHHHHHHHHHH
Q 007913 211 PVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNL--DPFLPY-----GTEGVFEAAAVVYWS 283 (585)
Q Consensus 211 ~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~-----g~~~~~~~~~~~~~~ 283 (585)
+...++.+++.+..+.|.|.++++..+...+-.+.+.++.+-++-..+..|. .-..|+ ....+.-+...++++
T Consensus 256 lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl~l~ga~~g~~y~~~~~~~kl~~~~vW~dAAtqiffs 335 (629)
T KOG3659|consen 256 LCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGLTLPGAKNGIQYYLTPDIEKLKEPSVWIDAATQIFFS 335 (629)
T ss_pred HHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcccccccccchhheecccHHHHhhHHHHHHHHHHHHhh
Confidence 3444555566777889999999986666655544444444444321111111 111111 113344555555555
Q ss_pred h-hcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 007913 284 Y-TGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALA 325 (585)
Q Consensus 284 ~-~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~ 325 (585)
. .|+.....++.-.|- +.|.=|=-+..-++....+++...+
T Consensus 336 lg~GfG~L~AfaSyn~F-~NNc~rDAll~S~in~~ts~~sgfv 377 (629)
T KOG3659|consen 336 LGPGFGVLIAFASYNKF-HNNCYRDALLTSIINCLTSFLSGFV 377 (629)
T ss_pred cCccchhhhhhhhhccc-ccchhhhhHHHHHHHHHHHHHHHHH
Confidence 4 566666666554443 2333333333333444444444433
No 130
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=45.82 E-value=2.5e+02 Score=26.01 Aligned_cols=9 Identities=22% Similarity=0.228 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 007913 407 TLLVTTLSA 415 (585)
Q Consensus 407 i~~~~~i~~ 415 (585)
+++.++++.
T Consensus 87 L~~~~if~~ 95 (206)
T PF06570_consen 87 LLFFGIFSL 95 (206)
T ss_pred HHHHHHHHH
Confidence 333333333
No 131
>PHA02898 virion envelope protein; Provisional
Probab=41.28 E-value=1.1e+02 Score=23.75 Aligned_cols=22 Identities=5% Similarity=0.064 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhhccccc
Q 007913 548 RFIICSAVMLVYYLLVGLHATY 569 (585)
Q Consensus 548 ~~~~~~~i~~~~y~~~~~~~~~ 569 (585)
+.+.++.+|++.|-.|+|+=+.
T Consensus 53 Ilgivl~lG~~ifs~y~r~C~~ 74 (92)
T PHA02898 53 ILAIILILGIIFFKGYNMFCGG 74 (92)
T ss_pred HHHHHHHHHHHHHHHHhhhcCC
Confidence 3467778999999888875443
No 132
>PF14256 YwiC: YwiC-like protein
Probab=40.12 E-value=2.3e+02 Score=24.04 Aligned_cols=46 Identities=7% Similarity=-0.021 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007913 407 TLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIALLVRRYYE 452 (585)
Q Consensus 407 i~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~ 452 (585)
-+...++..+++........--....+.+..|....-....+|.|+
T Consensus 7 AW~Ml~~P~l~G~~~~~~w~~~~L~~aw~~~yl~~~p~~~~~k~r~ 52 (129)
T PF14256_consen 7 AWAMLLVPFLLGMAGGPSWAHLPLLLAWLFGYLAFYPFLLWLKQRR 52 (129)
T ss_pred hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4445555555555544444444445566667776665555555554
No 133
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=37.73 E-value=5.1e+02 Score=27.30 Aligned_cols=87 Identities=20% Similarity=0.149 Sum_probs=52.6
Q ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHH-HHHHHHHHHhhHHH
Q 007913 347 QIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVT-TLSAIIALFSSLNI 425 (585)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~-~i~~~~~~~~~~~~ 425 (585)
...++++..++....+++.+|.+..++.-.++-+.+.-+. +.....+.+-.++.. ..-+.+..+.+...
T Consensus 132 r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~----------~~~~~~s~~~~i~~~~~~~lll~~Ir~Lk~ 201 (449)
T KOG1304|consen 132 RKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDE----------HSPGVLSVRLYILIQLPPLLLLNLIRNLKI 201 (449)
T ss_pred HhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhc----------cCCCCccHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3445888999999999999999888888888888776651 112233333333322 23333444456666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007913 426 LSSVFSFSTLSIFMLMAI 443 (585)
Q Consensus 426 l~~~~~~~~~~~~~~~~~ 443 (585)
+..++.++..+...-..+
T Consensus 202 Lsp~Sl~Anv~~~~g~~i 219 (449)
T KOG1304|consen 202 LSPFSLFANVFILVGLAI 219 (449)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 666555555444443333
No 134
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=35.83 E-value=4.2e+02 Score=25.70 Aligned_cols=96 Identities=13% Similarity=0.048 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHHhhH-----HHHH
Q 007913 353 AKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSL-----NILS 427 (585)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~-----~~l~ 427 (585)
...++....+...+.........+.|.+ .|.|.-.+.+.+.+ +.+.|.+.+++..+........... +.+.
T Consensus 157 ~~~~~P~~~~i~~~~~~~~~~~l~~~il---~r~~~~~~~~~~~~-~~~lP~~~~~~~i~~~~~~l~~~~~~~~~~~~i~ 232 (290)
T PF09991_consen 157 IKRLFPALLIISALLMSLINYYLARRIL---RRLGIPIPPLPPFR-EWRLPRWLIWLLIVALALSLVGGGFGGSWLQIIG 232 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCCCCCCCchH-HHhCcHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 3344444444444444444444455544 34443323333444 5678888877665544333332211 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 007913 428 SVFSFSTLSIFMLMAIALLVRRYYE 452 (585)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~l~~r~~~ 452 (585)
.-........|.+..++.+....++
T Consensus 233 ~Nl~~v~~~l~~~qGla~~~~~~~~ 257 (290)
T PF09991_consen 233 LNLLIVLSFLFFIQGLAVIHFFLKR 257 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223334456667667666544443
No 135
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=35.14 E-value=5.5e+02 Score=26.94 Aligned_cols=49 Identities=10% Similarity=0.227 Sum_probs=32.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHHh
Q 007913 364 GMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFS 421 (585)
Q Consensus 364 ~~~~~~~~~~~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~ 421 (585)
+.+++.....++.|+.+..+=-|+. |||.=.| ..+++++++.+++.+..
T Consensus 67 G~i~s~f~i~YG~sKf~~G~~sDr~--------npr~fm~-~gLilsai~nil~Gfs~ 115 (448)
T COG2271 67 GILGSAFSITYGVSKFVMGVLSDRS--------NPRYFMA-FGLILSAIVNILFGFSP 115 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccC--------CCceeeh-HHHHHHHHHHHHHhhhh
Confidence 3445666778889999888877854 5443333 35667777777666664
No 136
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=34.95 E-value=3.8e+02 Score=27.06 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhh
Q 007913 550 IICSAVMLVYYLLVG 564 (585)
Q Consensus 550 ~~~~~i~~~~y~~~~ 564 (585)
.+.+++|++.|....
T Consensus 293 f~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 293 FALIIIGFVVYNLAE 307 (334)
T ss_pred HHHHHHHhheEEccC
Confidence 445577888775543
No 137
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=34.87 E-value=65 Score=30.33 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=20.1
Q ss_pred hcccccCCCCCCcccccchHHHHHHHHHHHH
Q 007913 507 ALLPKQRVPKLWGVPLVPWLPSLSIAMNLFL 537 (585)
Q Consensus 507 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 537 (585)
..+..+..|+++|...+||=..+|+...+..
T Consensus 146 ~tfl~pg~~~~~Rs~lmP~H~~~Gl~~f~la 176 (245)
T KOG1619|consen 146 FTFLFPGSPESYRSRLMPWHVFLGLAIFILA 176 (245)
T ss_pred HHHhcCCCCccHHhhhhhHHHHHHHHHHHHH
Confidence 3333456677888888998766665544443
No 138
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=34.33 E-value=3e+02 Score=23.57 Aligned_cols=18 Identities=17% Similarity=0.045 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHhccCC
Q 007913 437 IFMLMAIALLVRRYYEKD 454 (585)
Q Consensus 437 ~~~~~~~~~l~~r~~~~~ 454 (585)
+..+...+....|+++.+
T Consensus 15 s~~ll~~g~~~Ir~~~~~ 32 (133)
T PF04238_consen 15 SAVLLLIGWYFIRRGRIK 32 (133)
T ss_pred HHHHHHHHHHHHHhCCHH
Confidence 333444444444544433
No 139
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=33.51 E-value=4.7e+02 Score=25.61 Aligned_cols=41 Identities=12% Similarity=0.046 Sum_probs=21.1
Q ss_pred cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHh
Q 007913 523 VPWLPSLSIAMNLFLIGSLGYLAFLRFIICSAVMLVYYLLV 563 (585)
Q Consensus 523 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~ 563 (585)
.-.-|+.+++..+.+........-......++.+.+.+-.+
T Consensus 242 ~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 242 MSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 34557777777777765433222223344444555544333
No 140
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=33.51 E-value=3.2e+02 Score=23.62 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHH
Q 007913 527 PSLSIAMNLFLIGS---LGYLAFLRFIICSAVMLVYYLL 562 (585)
Q Consensus 527 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~y~~ 562 (585)
..+.+...+.++.+ .+...+..+..|.+..+.+-+.
T Consensus 98 ~~~l~ga~ialigQ~y~~~~~~~~~~~~W~~~~l~~~~~ 136 (145)
T PF09925_consen 98 GAVLFGALIALIGQIYQTGADPWQLFLLWALLALPLAYL 136 (145)
T ss_pred HHHHHHHHHHHHHhHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 33334444555443 4666666777787766655433
No 141
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=31.80 E-value=4.5e+02 Score=24.86 Aligned_cols=67 Identities=19% Similarity=0.182 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHhccc-ccCCCCCCcccccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q 007913 490 IGYVVTIAPWFLGTLGMALLP-KQRVPKLWGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFIICSAVMLVYY 560 (585)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y 560 (585)
....+..+.|.+....+.+.. .++++|+++....-.+.+.++...--+...++. ....+++.|.+.|
T Consensus 116 ~~~~~~~iiW~lal~Gi~~kl~~~~~~r~ls~~~yl~mGw~~v~~~~~l~~~l~~----~~~~~l~~GGv~Y 183 (226)
T COG1272 116 LGWILLGLIWGLALAGILFKLFFKKRFRKLSLVLYLAMGWLGLIVIKPLIAKLGL----IGLVLLALGGVLY 183 (226)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhccCcCceeeehhhHHHHHHHHHHHHHHHHhCch----HHHHHHHHHhHHh
Confidence 344566666666665544433 335666666666666666666655555555554 5567777787777
No 142
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=31.60 E-value=6.3e+02 Score=26.52 Aligned_cols=93 Identities=12% Similarity=0.131 Sum_probs=62.6
Q ss_pred HhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHh
Q 007913 146 SFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAM 225 (585)
Q Consensus 146 ~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 225 (585)
..+++.+|+....+.+....++...++.....+.++|+...++... -..+..++.+....+..
T Consensus 265 ~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~kis-----------------Y~~~v~i~~i~S~~ian 327 (427)
T PF05525_consen 265 QIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKIS-----------------YKVWVIIFTIFSFIIAN 327 (427)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----------------hHHHHHHHHHHHHHHHH
Confidence 4456789999999999999999998888888889999998776111 12555666677777777
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhee
Q 007913 226 SGTRRSSWLNWISSIVSSCVIVFVIIVGFV 255 (585)
Q Consensus 226 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 255 (585)
.|....-++..-...+.--..+++++..+.
T Consensus 328 ~Gl~~Ii~~s~PiL~~iYP~~IvLIll~l~ 357 (427)
T PF05525_consen 328 LGLDQIIKISVPILMFIYPVAIVLILLNLF 357 (427)
T ss_pred hCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 887766555443333333333344444443
No 143
>PRK11383 hypothetical protein; Provisional
Probab=29.62 E-value=3.7e+02 Score=23.18 Aligned_cols=85 Identities=12% Similarity=0.104 Sum_probs=37.0
Q ss_pred CCCchHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccCCCC---CCCchhHHHHHHHH
Q 007913 399 KTQTPINATL----LVTTLSAIIALFSSLNILSSVFSFSTLS-IFMLMAIALLVRRYYEKDVT---PKNNLVKFLVCLTV 470 (585)
Q Consensus 399 ~~~~P~~ai~----~~~~i~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~l~~r~~~~~~~---~~~~~~~~~~~~~~ 470 (585)
+.+.|..|.. +..+++++..+++-++.=..+..-++.+ .+.+..++.+...|..+|.. +....+..++....
T Consensus 4 ~~~~~t~af~~~sw~al~~g~~~y~iGLwnA~~~LsEKGyY~~vl~lglF~avs~QK~vRD~~egi~vt~~f~~~cw~a~ 83 (145)
T PRK11383 4 KISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEGIPTTSIYYMTCLTVF 83 (145)
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHHHhhcccCCChhHHHHHHHHHHH
Confidence 3455555543 3333333334444455444444444432 33333344443333222221 11123444555556
Q ss_pred HHHHHhHHhhhcc
Q 007913 471 VVASSIGITAFWN 483 (585)
Q Consensus 471 ~~~~~~~~~~~~~ 483 (585)
++++.++.+..|+
T Consensus 84 l~~i~LL~iGLwN 96 (145)
T PRK11383 84 IISVALLMVGLWN 96 (145)
T ss_pred HHHHHHHHHHHhc
Confidence 6665555555553
No 144
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=29.23 E-value=72 Score=29.32 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=24.5
Q ss_pred hhhhcCCC-CChhhHHHHHHHHHHHHHHHHHHH
Q 007913 294 AEETKKPS-RDIPIGLVGSMCMITAVYCLMALA 325 (585)
Q Consensus 294 ~~E~k~p~-r~~p~ai~~~~~~~~~~y~l~~~~ 325 (585)
-|-..||| |..||+++.+.+.+.+.-++..+.
T Consensus 204 IEGfHDPKFKr~p~~vias~vaS~~~gii~v~~ 236 (240)
T PRK00968 204 IEGFHDPKFKRWPRAVIASFVASLVCGIVAVLM 236 (240)
T ss_pred eecCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 36678998 899999999988877766655443
No 145
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=27.72 E-value=6.1e+02 Score=25.13 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=22.8
Q ss_pred chHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHH
Q 007913 402 TPINATLLVTTLSAIIALF--SSLNILSSVFSFSTLSIFMLM 441 (585)
Q Consensus 402 ~P~~ai~~~~~i~~~~~~~--~~~~~l~~~~~~~~~~~~~~~ 441 (585)
.|..++.+..+++.+-..+ ...|.+.........+.|..+
T Consensus 97 ~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~v 138 (304)
T COG0109 97 SPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVV 138 (304)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4777888777766543322 234555555555555555443
No 146
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=27.15 E-value=5.9e+02 Score=26.96 Aligned_cols=12 Identities=8% Similarity=0.357 Sum_probs=5.0
Q ss_pred HHHHHHHHHhhc
Q 007913 554 AVMLVYYLLVGL 565 (585)
Q Consensus 554 ~i~~~~y~~~~~ 565 (585)
.+.++.|..|+.
T Consensus 451 ~~~~~~~~~~~~ 462 (478)
T TIGR00913 451 PIFIALYIGHKV 462 (478)
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 147
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=26.93 E-value=82 Score=27.82 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=23.7
Q ss_pred hhhcCCC-CChhhHHHHHHHHHHHHHHHHHHH
Q 007913 295 EETKKPS-RDIPIGLVGSMCMITAVYCLMALA 325 (585)
Q Consensus 295 ~E~k~p~-r~~p~ai~~~~~~~~~~y~l~~~~ 325 (585)
|...||| |..||+++.+.+...+.-++..+.
T Consensus 195 EGfHDPKfkk~pk~vias~vasil~~iia~l~ 226 (230)
T COG4060 195 EGFHDPKFKKLPKAVIASLVASILAGIIAVLL 226 (230)
T ss_pred ecccChhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 6678998 889999999988777666555444
No 148
>PLN02351 cytochromes b561 family protein
Probab=26.93 E-value=5.6e+02 Score=24.44 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=12.1
Q ss_pred cCCCCCCcccccchHHHHHHHH
Q 007913 512 QRVPKLWGVPLVPWLPSLSIAM 533 (585)
Q Consensus 512 ~~~~~~~~~~~~p~~~~~~~~~ 533 (585)
|..++..|....||=...|.+.
T Consensus 145 P~~~~~~Ra~~~P~Hv~~Gl~i 166 (242)
T PLN02351 145 RGEMRTTRTTVLPWHVFLGLYT 166 (242)
T ss_pred CCCchhhHHHHhHHHHHHHHHH
Confidence 3444456667777755554443
No 149
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=26.27 E-value=8.8e+02 Score=26.47 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=32.6
Q ss_pred hccCCC--CCCCc--hhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhccc
Q 007913 450 YYEKDV--TPKNN--LVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLP 510 (585)
Q Consensus 450 ~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (585)
+++|+. +|++| ..++++.++.++|..++.-.-+ ...+...+|+..+++.++.+
T Consensus 494 ~~~~~~~~~~~f~~p~~p~~p~~~i~~~~~l~~~l~~--------~~~~~~~~w~~~g~~~y~~y 550 (557)
T TIGR00906 494 WRQPQNKQKVAFKVPLVPFLPALSILINIFLMVQLDA--------DTWVRFAIWMAIGFLIYFLY 550 (557)
T ss_pred hcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHHHHHHhhh
Confidence 334554 44443 4456888888888877654433 33466677777777666555
No 150
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=25.15 E-value=43 Score=21.88 Aligned_cols=17 Identities=6% Similarity=0.085 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHhhcc
Q 007913 550 IICSAVMLVYYLLVGLH 566 (585)
Q Consensus 550 ~~~~~i~~~~y~~~~~~ 566 (585)
.+.+++++++|+.|+|+
T Consensus 23 vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 23 VIIIVLGAFLFFWYRRK 39 (40)
T ss_pred HHHHHHHHHhheEEecc
Confidence 33444555555444443
No 151
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=24.81 E-value=72 Score=26.20 Aligned_cols=20 Identities=5% Similarity=0.006 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhhcccccch
Q 007913 552 CSAVMLVYYLLVGLHATYDV 571 (585)
Q Consensus 552 ~~~i~~~~y~~~~~~~~~~~ 571 (585)
++++..++||+..|+++++.
T Consensus 10 lv~i~~i~yF~~iRPQkKr~ 29 (109)
T PRK05886 10 FLLIMGGFMYFASRRQRKAM 29 (109)
T ss_pred HHHHHHHHHHHHccHHHHHH
Confidence 33444455555555444433
No 152
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=24.72 E-value=58 Score=25.32 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=9.3
Q ss_pred HHHHHHHHHHhhcccccch
Q 007913 553 SAVMLVYYLLVGLHATYDV 571 (585)
Q Consensus 553 ~~i~~~~y~~~~~~~~~~~ 571 (585)
.++..++||+.-|..+++.
T Consensus 10 vv~~~i~yf~~~rpqkK~~ 28 (84)
T TIGR00739 10 VLIFLIFYFLIIRPQRKRR 28 (84)
T ss_pred HHHHHHHHHheechHHHHH
Confidence 3445566666544443333
No 153
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=24.13 E-value=8.3e+02 Score=25.46 Aligned_cols=74 Identities=11% Similarity=0.205 Sum_probs=55.2
Q ss_pred hHhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHH
Q 007913 145 FSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIA 224 (585)
Q Consensus 145 y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (585)
-.+.++.||+....+.|-...++...+........+||++...+.. . -..++.++.+....+.
T Consensus 266 ~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~~-----S------------Y~~~v~if~i~sflva 328 (431)
T COG1114 266 SAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPKL-----S------------YKTWVIIFTLISFLVA 328 (431)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----c------------HHHHHHHHHHHHHHHH
Confidence 3566789999999999999999999988888889999999887611 1 1256666777777777
Q ss_pred hhhhhhhhHHH
Q 007913 225 MSGTRRSSWLN 235 (585)
Q Consensus 225 ~~g~~~~~~~~ 235 (585)
..|....-++.
T Consensus 329 n~GL~~Ii~is 339 (431)
T COG1114 329 NLGLEQIIKIS 339 (431)
T ss_pred HhhHHHHHHHH
Confidence 77766554443
No 154
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=23.60 E-value=8.3e+02 Score=25.27 Aligned_cols=20 Identities=20% Similarity=0.203 Sum_probs=10.7
Q ss_pred CCCCCchHHHHHHHHHHHHH
Q 007913 397 HPKTQTPINATLLVTTLSAI 416 (585)
Q Consensus 397 ~~~~~~P~~ai~~~~~i~~~ 416 (585)
..|++.+.+.+.+..+++.+
T Consensus 61 aDr~~~~~~~l~~~~l~~~~ 80 (400)
T PF03825_consen 61 ADRFGSAKRILALLSLLSAL 80 (400)
T ss_pred HhHhhhHHHHHHHHHHHHHH
Confidence 33555666666555555443
No 155
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=23.20 E-value=4.4e+02 Score=21.86 Aligned_cols=18 Identities=17% Similarity=0.192 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhhccc
Q 007913 550 IICSAVMLVYYLLVGLHA 567 (585)
Q Consensus 550 ~~~~~i~~~~y~~~~~~~ 567 (585)
..++.+.++.|..++.+.
T Consensus 96 p~il~l~L~~Wi~~kl~~ 113 (117)
T PF07226_consen 96 PSILCLILVFWIGYKLGF 113 (117)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344455556665555443
No 156
>COG4025 Predicted membrane protein [Function unknown]
Probab=22.46 E-value=6.7e+02 Score=23.73 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=12.2
Q ss_pred hhHHHHHHHhcCCCc
Q 007913 376 QARYTTQIARAHMIP 390 (585)
Q Consensus 376 ~sR~l~~~ardg~lP 390 (585)
.-|-...++||+.+|
T Consensus 56 ~ve~v~e~~re~~i~ 70 (284)
T COG4025 56 KVEKVMEKVREFQIP 70 (284)
T ss_pred HHHHHHHHHhcCCCc
Confidence 456788899999987
No 157
>PRK03557 zinc transporter ZitB; Provisional
Probab=22.18 E-value=7.8e+02 Score=24.44 Aligned_cols=17 Identities=0% Similarity=-0.126 Sum_probs=7.8
Q ss_pred HHHhccCCCCCCCchhH
Q 007913 447 VRRYYEKDVTPKNNLVK 463 (585)
Q Consensus 447 ~~r~~~~~~~~~~~~~~ 463 (585)
++.+|.++.+.|+-..|
T Consensus 69 ~~s~kp~d~~hpyG~~r 85 (312)
T PRK03557 69 QFSRRPPTIRHTFGWLR 85 (312)
T ss_pred HHhcCCCCCCCCCchHH
Confidence 33445555554544334
No 158
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=22.04 E-value=8.8e+02 Score=24.98 Aligned_cols=74 Identities=15% Similarity=0.203 Sum_probs=51.7
Q ss_pred HhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHh
Q 007913 146 SFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAM 225 (585)
Q Consensus 146 ~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 225 (585)
+.+++.+|+..+.+.+....++...++.....+.++++....+ . .. ...+.+...+....+..
T Consensus 259 ~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~-k--~~--------------y~~~v~~~~l~s~~ia~ 321 (378)
T TIGR00796 259 AYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP-K--LS--------------YKTWVIVFTLFSFIVAN 321 (378)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C--CC--------------HHHHHHHHHHHHHHHHH
Confidence 5667899999999999999999888888888888898888754 1 00 11344455555555666
Q ss_pred hhhhhhhHHHH
Q 007913 226 SGTRRSSWLNW 236 (585)
Q Consensus 226 ~g~~~~~~~~~ 236 (585)
.|....-++..
T Consensus 322 ~Gl~~Ii~~~~ 332 (378)
T TIGR00796 322 LGLTQIISISI 332 (378)
T ss_pred hCHHHHHHHHH
Confidence 67666555443
No 159
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=22.01 E-value=1.2e+02 Score=20.70 Aligned_cols=12 Identities=8% Similarity=0.110 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 007913 551 ICSAVMLVYYLL 562 (585)
Q Consensus 551 ~~~~i~~~~y~~ 562 (585)
....+|+++|.+
T Consensus 19 ~~~F~gi~~w~~ 30 (49)
T PF05545_consen 19 FVFFIGIVIWAY 30 (49)
T ss_pred HHHHHHHHHHHH
Confidence 333455566543
No 160
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=21.58 E-value=85 Score=24.25 Aligned_cols=18 Identities=11% Similarity=0.312 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhhccccc
Q 007913 552 CSAVMLVYYLLVGLHATY 569 (585)
Q Consensus 552 ~~~i~~~~y~~~~~~~~~ 569 (585)
.+++..++||+.-|.+++
T Consensus 8 lv~~~~i~yf~~~rpqkk 25 (82)
T PF02699_consen 8 LVIIFVIFYFLMIRPQKK 25 (82)
T ss_dssp HHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHhhheecHHHH
Confidence 335555666655444333
No 161
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=21.46 E-value=84 Score=25.68 Aligned_cols=20 Identities=10% Similarity=0.223 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhhccccc
Q 007913 550 IICSAVMLVYYLLVGLHATY 569 (585)
Q Consensus 550 ~~~~~i~~~~y~~~~~~~~~ 569 (585)
+.+.++..++||+..|..++
T Consensus 22 l~lvii~~i~yf~~~RpqkK 41 (106)
T PRK05585 22 LPLVVFFAIFYFLIIRPQQK 41 (106)
T ss_pred HHHHHHHHHHHHHhccHHHH
Confidence 33444555666665443333
No 162
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=21.13 E-value=6.3e+02 Score=22.97 Aligned_cols=47 Identities=17% Similarity=0.279 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhcHhHHhhhh--hhhcCCC-CChhhHHHHHHHHHHHH
Q 007913 272 GVFEAAAVVYWSYTGFDMVATMA--EETKKPS-RDIPIGLVGSMCMITAV 318 (585)
Q Consensus 272 ~~~~~~~~~~~~~~G~e~~~~~~--~E~k~p~-r~~p~ai~~~~~~~~~~ 318 (585)
++.......+|+|.-.-..-.+. ++.++|+ .+..|.+..++.+..+-
T Consensus 65 gl~~l~~si~~~fry~Rlar~L~~~~~~~~P~k~~~~~~l~~Gl~~nl~G 114 (183)
T PF12263_consen 65 GLVALFFSIFWSFRYTRLARRLRSPNPAKRPSKADVVRLLRIGLIINLVG 114 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34444445556554333222221 2233443 34556666665554443
No 163
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=21.09 E-value=5.5e+02 Score=22.28 Aligned_cols=69 Identities=20% Similarity=0.293 Sum_probs=30.4
Q ss_pred chhHHHHHHHHHHHHHhHHhhhccC----CC------cchHHHHHHHHHHHHHHHH--HhcccccCCCCCCcccccchHH
Q 007913 460 NLVKFLVCLTVVVASSIGITAFWNS----NG------RGWIGYVVTIAPWFLGTLG--MALLPKQRVPKLWGVPLVPWLP 527 (585)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~ 527 (585)
+...+..-...++|..+++...+.. +. .+|.++...++..+-.... .+.+| ..++.+|....||=.
T Consensus 41 k~iH~~l~~la~~~~vvGl~avf~~~~~~~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P--~~~~~~r~~~~p~H~ 118 (144)
T cd08766 41 KAVHLTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFP--GASRNTRAALLPWHV 118 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHH
Confidence 3444444444455555554444332 11 3444444433333333333 23444 344456666667644
Q ss_pred HHH
Q 007913 528 SLS 530 (585)
Q Consensus 528 ~~~ 530 (585)
..|
T Consensus 119 ~~G 121 (144)
T cd08766 119 FLG 121 (144)
T ss_pred HHH
Confidence 433
No 164
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=20.79 E-value=8.9e+02 Score=24.55 Aligned_cols=20 Identities=10% Similarity=-0.099 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 007913 548 RFIICSAVMLVYYLLVGLHA 567 (585)
Q Consensus 548 ~~~~~~~i~~~~y~~~~~~~ 567 (585)
..++.++++++-|.+.++++
T Consensus 189 ~~~~~~via~~D~~~qr~~~ 208 (342)
T TIGR01404 189 CLGFFLVVGLADFAFQRYLF 208 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44566677888876644433
No 165
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=20.53 E-value=5.7e+02 Score=27.67 Aligned_cols=19 Identities=16% Similarity=0.397 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 007913 542 GYLAFLRFIICSAVMLVYY 560 (585)
Q Consensus 542 ~~~~~~~~~~~~~i~~~~y 560 (585)
+|...+...+.+.+...|+
T Consensus 412 GW~pl~ia~~l~~iM~tW~ 430 (534)
T PF02705_consen 412 GWFPLLIAAVLFTIMYTWR 430 (534)
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 166
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=20.47 E-value=95 Score=30.70 Aligned_cols=19 Identities=21% Similarity=0.553 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 007913 549 FIICSAVMLVYYLLVGLHA 567 (585)
Q Consensus 549 ~~~~~~i~~~~y~~~~~~~ 567 (585)
.++.+++.+++|+..+.||
T Consensus 265 IliIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 265 ILIIVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455556665544433
No 167
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=20.27 E-value=4e+02 Score=20.28 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=31.3
Q ss_pred hHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 007913 288 DMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALT 327 (585)
Q Consensus 288 e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~ 327 (585)
+.-..+-+|++.|=|.+.+-...+...+..+..++.+.-.
T Consensus 4 ~~~~rLraE~~aPfR~lR~f~y~a~~aSa~iG~~i~~~rl 43 (75)
T PF11998_consen 4 EQYARLRAEAQAPFRGLRRFFYGAFGASAGIGLFIFLFRL 43 (75)
T ss_pred HHHHHHHHHHHCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667899999999999999998888887777666533
Done!