Query 007913
Match_columns 585
No_of_seqs 311 out of 3254
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 13:35:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007913.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007913hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 5.8E-53 2E-57 446.1 40.6 420 73-571 4-435 (445)
2 3gia_A Uncharacterized protein 100.0 5.6E-51 1.9E-55 430.7 40.1 365 74-454 3-371 (444)
3 4djk_A Probable glutamate/gamm 100.0 2E-48 7E-53 418.7 42.0 436 71-566 5-467 (511)
4 2jln_A MHP1; hydantoin, transp 99.3 5.8E-09 2E-13 110.1 31.5 283 75-383 23-329 (501)
5 2xq2_A Sodium/glucose cotransp 98.7 0.00036 1.2E-08 75.1 42.5 282 76-380 48-377 (593)
6 3dh4_A Sodium/glucose cotransp 98.7 5.1E-05 1.7E-09 80.6 34.2 285 76-387 19-352 (530)
7 2a65_A Leutaa, Na(+):neurotran 97.9 0.017 6E-07 60.2 30.5 238 80-321 10-292 (519)
8 4ain_A Glycine betaine transpo 94.9 4.2 0.00015 42.0 24.5 23 76-98 93-115 (539)
9 2wsw_A BCCT family betaine/car 89.9 19 0.00067 36.9 29.3 24 76-99 88-111 (509)
10 2l2t_A Receptor tyrosine-prote 44.8 18 0.00061 23.3 2.8 14 554-567 25-38 (44)
11 2ks1_B Epidermal growth factor 40.9 22 0.00075 22.9 2.7 14 554-567 26-39 (44)
12 2jwa_A Receptor tyrosine-prote 25.8 62 0.0021 20.8 2.9 12 555-566 27-38 (44)
13 2knc_A Integrin alpha-IIB; tra 25.4 53 0.0018 22.1 2.7 12 552-563 23-34 (54)
14 2jo1_A Phospholemman; FXYD1, N 23.4 60 0.002 23.0 2.7 30 554-584 29-58 (72)
15 2rdd_B UPF0092 membrane protei 21.6 68 0.0023 19.6 2.5 16 554-569 11-26 (37)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=5.8e-53 Score=446.13 Aligned_cols=420 Identities=20% Similarity=0.288 Sum_probs=357.4
Q ss_pred CccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHh
Q 007913 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVEL 152 (585)
Q Consensus 73 ~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~ 152 (585)
++.||+++.++++++.+++++|+|+|..++.. .. +||.++++|+++++++++.+++++|+++++|++||.|+|+++.+
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~-~~-~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~ 81 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANL-AS-TGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCF 81 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHH-HH-HCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHS
T ss_pred CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHH-HH-hhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHc
Confidence 34679999999999999999999999998875 34 78888999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhh
Q 007913 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (585)
Q Consensus 153 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 232 (585)
||.+|++.||.+++.+....+.+....++++...++. ....+ ...+++++++++++.+|++|+|..+
T Consensus 82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------~~~~~~~~~~~~~~~in~~g~~~~~ 148 (445)
T 3l1l_A 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI-LKDPW------------VLTITCVVVLWIFVLLNIVGPKMIT 148 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGG-GGSHH------------HHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc-ccccH------------HHHHHHHHHHHHHHHHHHhchHHHH
Confidence 9999999999999999999888888888888766551 11111 1346788888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhheecccCCCCC-CCCCcC---hhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHH
Q 007913 233 WLNWISSIVSSCVIVFVIIVGFVHGKTTNLD-PFLPYG---TEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGL 308 (585)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~g---~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai 308 (585)
+++.+++.++++.++++++.++.+.+.+++. ++.+.+ +.+++.++...+|+|.|+|..++++||+|||+|++||++
T Consensus 149 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~ 228 (445)
T 3l1l_A 149 RVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIAT 228 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHH
Confidence 9999999999999988888887766655543 343433 457888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccc-cccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcC
Q 007913 309 VGSMCMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAH 387 (585)
Q Consensus 309 ~~~~~~~~~~y~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg 387 (585)
..+..+++++|++..++.....|+++.. .++|+.++++..++++...++.+..+++.+++.++.+++.+|++++|||||
T Consensus 229 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg 308 (445)
T 3l1l_A 229 IGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDG 308 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999998888887764 456999999988888899999999999999999999999999999999999
Q ss_pred CCchhhhccCCCCCchHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCc
Q 007913 388 MIPPWFALVHPKTQTPINATLLVTTLSAIIALF-------SSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPKNN 460 (585)
Q Consensus 388 ~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~ 460 (585)
.+|++|+|+| |+++|+++++++++++.++.+. ..++.+.++.+...++.|.+.+++++++|+|+| ++
T Consensus 309 ~lP~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-~~---- 382 (445)
T 3l1l_A 309 LFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF-GK---- 382 (445)
T ss_dssp SSCGGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-GG----
T ss_pred CCcHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-cc----
Confidence 9999999999 6799999999999988776654 347899999999999999999999999998754 11
Q ss_pred hhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccchHHHHHHHHHHHHHhc
Q 007913 461 LVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGS 540 (585)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 540 (585)
|.|..++++.++.+.+++++..
T Consensus 383 ----------------------------------------------------------r~~~~~~~~~~~~~~~~~~~~~ 404 (445)
T 3l1l_A 383 ----------------------------------------------------------ARPAYLAVTTIAFLYCIWAVVG 404 (445)
T ss_dssp ----------------------------------------------------------GCTTTHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------ccchhHHHHHHHHHHHHHHHHH
Confidence 1134567888888888888888
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcccccch
Q 007913 541 LGYLAFLRFIICSAVMLVYYLLVGLHATYDV 571 (585)
Q Consensus 541 ~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~ 571 (585)
.++..+....+++++|+++|+.++||++++.
T Consensus 405 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~ 435 (445)
T 3l1l_A 405 SGAKEVMWSFVTLMVITAMYALNYNRLHKNP 435 (445)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHSTTCCCS
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhhcccCc
Confidence 8888888889999999999987766554433
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=5.6e-51 Score=430.73 Aligned_cols=365 Identities=19% Similarity=0.342 Sum_probs=327.1
Q ss_pred ccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhc
Q 007913 74 PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELG 153 (585)
Q Consensus 74 ~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g 153 (585)
+.||+++.++.+++++++++|+|++..++..... +||..+++|+++++++++++++++|+++++|++||.|+|+++.+|
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~-~G~~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G 81 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKI-AGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIG 81 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHH-HGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHC
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhC
Confidence 3578999999999999999999999999988776 899999999999999999999999999999999999999999999
Q ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhh
Q 007913 154 DFV-AYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (585)
Q Consensus 154 ~~~-g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 232 (585)
|.+ +...+|.+++.+....+.++..+++++...++ ..++.+ ...+++.+++++++.+|++|.|..+
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~------------~~~~~~~~~~~~~~~in~~g~~~~~ 148 (444)
T 3gia_A 82 DNIITGALSILLWMSYVISIALFAKGFAGYFLPLIN-APINTF------------NIAITEIGIVAFFTALNFFGSKAVG 148 (444)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCHH------------HHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchH------------HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 963 55568999999999999999999999998876 322222 1236788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhheecccCCCCCC-CCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHH
Q 007913 233 WLNWISSIVSSCVIVFVIIVGFVHGKTTNLDP-FLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGS 311 (585)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~ 311 (585)
+++.+++.++++.++++++.++...+++|+.+ +.++++.+++.++...+|+|.|+|..++++||+|||+|++||++..+
T Consensus 149 ~~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~ 228 (444)
T 3gia_A 149 RAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFIS 228 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHH
Confidence 99999999999999988888887777777765 55667778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccc--cccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCC
Q 007913 312 MCMITAVYCLMALALTMMVKYTEID--MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMI 389 (585)
Q Consensus 312 ~~~~~~~y~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~l 389 (585)
..+++++|++..++.....|++++. ++.|+.++++...++++..++.+..+++.+++.++.+++.||++++|||||.+
T Consensus 229 ~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~l 308 (444)
T 3gia_A 229 ILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGEL 308 (444)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 9999999999999998888887764 34578888887777888889999999999999999999999999999999999
Q ss_pred chhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 007913 390 PPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKD 454 (585)
Q Consensus 390 P~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~ 454 (585)
|++|+|+| | ++|.++++++++++.++.++.+++.+.++.+.+.++.|.+.+++++++|+++|+
T Consensus 309 P~~f~~~~-~-~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 371 (444)
T 3gia_A 309 PEFFERKV-W-FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVGG 371 (444)
T ss_dssp CSSCCTTS-C-CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC
T ss_pred CHHHhCCC-C-CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999988 4 569999999999999888888999999999999999999999999999888643
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=2e-48 Score=418.67 Aligned_cols=436 Identities=16% Similarity=0.227 Sum_probs=319.7
Q ss_pred cCCccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHH-HHHHHHHHHhhh--hccCCCchhHh
Q 007913 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSA-LLSAFCYTEFAV--EIPVAGGSFSF 147 (585)
Q Consensus 71 ~~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~-~~~a~~~~el~s--~~P~~Gg~y~~ 147 (585)
+++++||+++.+++++++++.++| ++..+. ... +|+..++.+++++++. ++.+++++|+++ ++| +||.|+|
T Consensus 5 ~~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~--~~~-~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~ 78 (511)
T 4djk_A 5 VQTGKAKQLTLLGFFAITASMVMA--VYEYPT--FAT-SGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAW 78 (511)
T ss_dssp -------CCCHHHHHHHTGGGGCC--GGGHHH--HHT-TTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHH
T ss_pred ccCccCccccHHHHHHHHHHHHHh--hchhHH--HHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhh
Confidence 456789999999999999999986 443443 233 8888777777777665 569999999999 999 9999999
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhh
Q 007913 148 LRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSG 227 (585)
Q Consensus 148 ~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 227 (585)
+++.+||.+||+.||.++++++...+......+.++...+. . ++.+.+.+...+++++++++++.+|++|
T Consensus 79 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------p~~~~~~~~~~~~~~~~~~~~~~in~~g 148 (511)
T 4djk_A 79 VSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILK-W---------PALNEDPITKTIAALIILWALALTQFGG 148 (511)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT-C---------GGGTSCSSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---------cccccCcHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999988888888888765531 0 1222222334578888899999999999
Q ss_pred hhhhhHHHHHHHHHHHHH-HHHHHHhheecc---cC----CCCCCCCCcC-hhHHHHHHHHHHHHhhcHhHHhhhhhhhc
Q 007913 228 TRRSSWLNWISSIVSSCV-IVFVIIVGFVHG---KT----TNLDPFLPYG-TEGVFEAAAVVYWSYTGFDMVATMAEETK 298 (585)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~---~~----~~~~~~~~~g-~~~~~~~~~~~~~~~~G~e~~~~~~~E~k 298 (585)
.|..++++.+.+.++++. ++++++.++... +. .+..++.|+. ..+.+.++...+|+|.|+|.+++++||+|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k 228 (511)
T 4djk_A 149 TKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMS 228 (511)
T ss_dssp SSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 999999999998875443 444444444321 11 1223333332 12344566778899999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHH----HHHHhC--cHHHHHHHHHHHHHHHHHHHHHh
Q 007913 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSI----AFRQIG--MNWAKYLVSVCALKGMTTSLLVG 372 (585)
Q Consensus 299 ~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 372 (585)
||+|++|||+..++.+++++|++..+++....|+++...+++..+ +++..| .++...++.+..+++.+++.++.
T Consensus 229 ~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (511)
T 4djk_A 229 NPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASW 308 (511)
T ss_dssp CCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888765544433 334455 57888899999999999999999
Q ss_pred hhhhhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHH-HHHHhh--------HHHHHHHHHHHHHHHHHHHHH
Q 007913 373 SLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAI-IALFSS--------LNILSSVFSFSTLSIFMLMAI 443 (585)
Q Consensus 373 ~~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~-~~~~~~--------~~~l~~~~~~~~~~~~~~~~~ 443 (585)
+++.||++++|||||.+|++|+|+| |+++|+++++++.++..+ +..+++ ++.+.++.+.+.++.|.+.++
T Consensus 309 ~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~ 387 (511)
T 4djk_A 309 IVGPSRGMYVTAQKNLLPAAFAKMN-KNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFI 387 (511)
T ss_dssp TTHHHHHTCHHHHGGGCSSSCCCCC-SSSCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCcccHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 579999999998554333 333333 789999999999999999999
Q ss_pred HHHHHHhccCCCCCCCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCccccc
Q 007913 444 ALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLV 523 (585)
Q Consensus 444 ~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (585)
+++++|+|+++.+|++|.. .++.+.+.++++.+++.++.++..++|....+.. .
T Consensus 388 ~~~~~r~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~-- 441 (511)
T 4djk_A 388 GYIVLVLKHPDLKRTFNIP---------------------GGKGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGD---S-- 441 (511)
T ss_dssp HHHHHHHHCCSCCCSCCCS---------------------STTHHHHHHHHHHHHHHHHHHHHTTCCCSCSTTC---C--
T ss_pred HHHHHHHhCCCCCCCeecC---------------------CCchHHHHHHHHHHHHHHHHHHeeeeCCccccCC---c--
Confidence 9999999887777665521 1122334556666666677777777774433322 1
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhcc
Q 007913 524 PWLPSLSIAMNLFLIGSLGYLAFLRFIICSAVMLVYYLLVGLH 566 (585)
Q Consensus 524 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~ 566 (585)
.+++ .....+++++++.++|+.|+++
T Consensus 442 ----------------~~~~-~~~~~~~~~~~~~i~~~~~~~~ 467 (511)
T 4djk_A 442 ----------------TDMY-VELLVVSFLVVLALPFILYAVH 467 (511)
T ss_dssp ----------------CCCH-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred ----------------hHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 2233 2334556666666666665443
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=99.26 E-value=5.8e-09 Score=110.13 Aligned_cols=283 Identities=12% Similarity=0.026 Sum_probs=153.3
Q ss_pred cccccChhHHHHHhhcccccccchhccHHhHhhccChh---HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHH
Q 007913 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA---IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (585)
Q Consensus 75 l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~ 151 (585)
.+|+.++++.+.+=++..+..+.+..-+... .|.. ++++.+++.++........+.++.++-.+ .....+..
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~---~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl~--~~v~~R~~ 97 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMT---SSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGIN--FTVAARMP 97 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHT---TTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCC--HHHHTTTT
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHh---cCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCCC--hhhhhHhh
Confidence 3577899999988888776665554333222 1332 55555555555555444455555544322 45577889
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---ccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhh
Q 007913 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMID---SNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGT 228 (585)
Q Consensus 152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 228 (585)
||++.+.+......+..+...+......++.+...+. +..+ ..+..+++.++...+.+.|.
T Consensus 98 FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~----------------~~v~~~i~~~l~~~~~~~G~ 161 (501)
T 2jln_A 98 FGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTN----------------LPLWIVIFGAIQVVTTFYGI 161 (501)
T ss_dssp SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------------HHHHHHHHHHHHHHHHTTHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch----------------HHHHHHHHHHHHHHHHHhCH
Confidence 9999998888777766666666666666666665542 0111 11334445566777788999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhheecccC--CCCCCCCC-cChhHHHHHHHHH-HHHhhcHhHHhhhhhhhcCCCCC-
Q 007913 229 RRSSWLNWISSIVSSCVIVFVIIVGFVHGKT--TNLDPFLP-YGTEGVFEAAAVV-YWSYTGFDMVATMAEETKKPSRD- 303 (585)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~-~g~~~~~~~~~~~-~~~~~G~e~~~~~~~E~k~p~r~- 303 (585)
|...+++.+...+.++.++.+.+..+...+. ++.....+ ....+++.++... .+...+.-..+.++.+.|++++.
T Consensus 162 ~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~ 241 (501)
T 2jln_A 162 TFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNAS 241 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCcccc
Confidence 9999999999888777766665554443322 11111111 1122344444332 22223334567888888887541
Q ss_pred ----------hhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhCcHHH-HHHHH-HHHHHHHHHHHHH
Q 007913 304 ----------IPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWA-KYLVS-VCALKGMTTSLLV 371 (585)
Q Consensus 304 ----------~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~ 371 (585)
.-.+...+..+...+..+........ ....+|...+.+...++.. ..+.. +..+++.+++...
T Consensus 242 ~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~-----~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~ 316 (501)
T 2jln_A 242 REGQTKADARYATAQWLGMVPASIIFGFIGAASMVL-----VGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPA 316 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333333332222222221111 1223455444443333322 45555 6666676665553
Q ss_pred -hhhhhhHHHHHH
Q 007913 372 -GSLGQARYTTQI 383 (585)
Q Consensus 372 -~~~~~sR~l~~~ 383 (585)
..++.+--+..+
T Consensus 317 ~n~ys~~~~l~~~ 329 (501)
T 2jln_A 317 ANLLSPAYTLCST 329 (501)
T ss_dssp HHTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHh
Confidence 566666555543
No 5
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.72 E-value=0.00036 Score=75.07 Aligned_cols=282 Identities=14% Similarity=0.112 Sum_probs=140.7
Q ss_pred ccccChhHHHHHhhcccccccchh-ccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhc
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFV-ITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELG 153 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~-~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g 153 (585)
.|+++++-...-.+++.+++..+. .++... . .|.. ..+.|. +.+.....++.+...-.+. +.-..++|.++.||
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y-~-~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Rfg 123 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGY-S-IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFN 123 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHH-H-TCGGGGHHHHH-HHHHHHHHHHTHHHHHHHT-TCCSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHH-H-cCHHHHHHHHH-HHHHHHHHHHHHHHHHHhC-CCCCcHHHHHHHcc
Confidence 477888866655556656554443 344333 3 4543 333322 2223333444444444443 34578999999999
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhh
Q 007913 154 DFVAYIAAGNILLEAVV-GAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (585)
Q Consensus 154 ~~~g~~~g~~~~l~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 232 (585)
+....+.+....+.+.+ ..+....+.+..++..++ .+. ...+.+..++.......-|.|...
T Consensus 124 ~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G-i~~----------------~~~i~i~~~i~~~Yt~~GGl~av~ 186 (593)
T 2xq2_A 124 KKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG-IPL----------------MYSILGLALFALVYSIYGGLSAVV 186 (593)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-CCH----------------HHHHHHHHHHHHHHHHTTC---CC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccH----------------HHHHHHHHHHHHHHHHhcchHHHH
Confidence 98877776655544433 344444555666666665 211 001212222334444556888877
Q ss_pred HHHHHHHHHHHHHHHHHHHhheecc----------------cCCCCCCCCCcC--------hhHHHH-HHHHHHHHhhcH
Q 007913 233 WLNWISSIVSSCVIVFVIIVGFVHG----------------KTTNLDPFLPYG--------TEGVFE-AAAVVYWSYTGF 287 (585)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~i~~~~~~----------------~~~~~~~~~~~g--------~~~~~~-~~~~~~~~~~G~ 287 (585)
+.+.+-.+++++..+++.+..+... .++.+..+.+.+ +...+. +.......+.|.
T Consensus 187 ~TD~iQ~iiml~~~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 266 (593)
T 2xq2_A 187 WTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGF 266 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHHHHhhcC
Confidence 7776666666554443333222110 011121111111 111111 121223345555
Q ss_pred h-HHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHH---HHHHhc-cc--------------cccc-ccccHHHHHHHH
Q 007913 288 D-MVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMA---LALTMM-VK--------------YTEI-DMNAAYSIAFRQ 347 (585)
Q Consensus 288 e-~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~---~~~~~~-~~--------------~~~~-~~~~~~~~~~~~ 347 (585)
+ ...+..=+.||+ |+..|+...+......+.++.. +..... .+ ..+. +++..++... +
T Consensus 267 ~q~~~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~p~l~-~ 344 (593)
T 2xq2_A 267 NQYIIQRTLAAKSV-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLT-Q 344 (593)
T ss_dssp TCSHHHHHHTTSCH-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHHHHHH-H
T ss_pred ChHHHHHhheeCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHHHHHH-H
Confidence 4 245555678886 6778888777655444333221 111111 00 1112 2344555556 6
Q ss_pred hCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 007913 348 IGMNWAKYLVSVCALKGMTTSLLVGSLGQARYT 380 (585)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 380 (585)
..++++.-++.++.+.+.+++..+.+.+.|-.+
T Consensus 345 ~lp~~l~gl~~a~llaA~mST~~s~l~a~st~~ 377 (593)
T 2xq2_A 345 FLPVGVKGVVFAALAAAIVSSLASMLNSTATIF 377 (593)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888888888777777653
No 6
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.69 E-value=5.1e-05 Score=80.58 Aligned_cols=285 Identities=13% Similarity=0.083 Sum_probs=137.7
Q ss_pred ccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhch
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGD 154 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~ 154 (585)
.|++++|-...-..++.+++..+......... .|.. ..+.|. +++.....+..+...-.+. +.-..++|.++.||+
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~-~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~~-~~~T~~e~l~~Rfg~ 95 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 95 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHH-TCGGGHHHHHH-HHHHHHHHHHHTHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHH-HHHHHHHHHHHHHHHHHHc-CCccHHHHHHHHcCc
Confidence 48899998877777766665554443333323 4543 333332 2222233344444443333 345789999999999
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHH--HHHHHHHhhhhhhh
Q 007913 155 FVAYIAAGNILLEAVV-GAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLIL--LVCNGIAMSGTRRS 231 (585)
Q Consensus 155 ~~g~~~g~~~~l~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~g~~~~ 231 (585)
....+.+....+.+.+ ..+......+..++..++ .+. ..++.+. +.......-|.|..
T Consensus 96 ~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G-i~~------------------~~~i~i~~~i~~~Yt~~GGl~aV 156 (530)
T 3dh4_A 96 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILG-IPL------------------MYSILGLALFALVYSIYGGLSAV 156 (530)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CCH------------------HHHHHHHHHHHHHTTC------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCH------------------HHHHHHHHHHHHHHHHhcchHHH
Confidence 8877777655544433 334444445555666655 211 1112111 11222233477777
Q ss_pred hHHHHHHHHHHHHHHHHHHHhheecc----------------cCCCCCCC----CC-----cChhHHHHHHHHHHHHhhc
Q 007913 232 SWLNWISSIVSSCVIVFVIIVGFVHG----------------KTTNLDPF----LP-----YGTEGVFEAAAVVYWSYTG 286 (585)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~~~~~----------------~~~~~~~~----~~-----~g~~~~~~~~~~~~~~~~G 286 (585)
.+.+.+-.++.++..+++.+..+... +++.+..+ .+ .++..++.+.......|.|
T Consensus 157 ~~TD~iQ~~im~~g~~~v~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~g 236 (530)
T 3dh4_A 157 VWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWG 236 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHCGGGGCSSCCSSSSGGGGSCTTHHHHSTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCchhcccccCCCCccccccchHHHHHHHHHHHHHHHHc
Confidence 77666666555544433332222110 11111111 11 0111111122122334555
Q ss_pred HhH-HhhhhhhhcCCCCChhhHHHHHHHHHHHHHHH---HHHHHHhccc----------------ccccccccHHHHHHH
Q 007913 287 FDM-VATMAEETKKPSRDIPIGLVGSMCMITAVYCL---MALALTMMVK----------------YTEIDMNAAYSIAFR 346 (585)
Q Consensus 287 ~e~-~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l---~~~~~~~~~~----------------~~~~~~~~~~~~~~~ 346 (585)
.+. ..+-.=..||+ |+..|+...+........++ ..++.....+ ++..+++..++...+
T Consensus 237 ~~q~i~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~l~~ 315 (530)
T 3dh4_A 237 FNQYIIQRTLAAKSV-SEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQ 315 (530)
T ss_dssp TTCHHHHHHHSSSCH-HHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHCHHHHHHHCTTCCSCCCCSSSGGGHHHHHHT
T ss_pred CCHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccccccCCCCCCcchHHHHHHH
Confidence 432 33444446776 56778877766544332211 1111111111 111234556666665
Q ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcC
Q 007913 347 QIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAH 387 (585)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg 387 (585)
..++++.-++..+.+.+.+++..+.+.+.|-.+ ++|=
T Consensus 316 -~lp~~l~Gl~~a~llAA~mST~ss~l~s~st~~---~~Di 352 (530)
T 3dh4_A 316 -FLPVGVKGVVFAALAAAIVSSLASMLNSTATIF---TMDI 352 (530)
T ss_dssp -TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHT
T ss_pred -HcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HhHH
Confidence 666777777777888888888888877777653 4553
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=97.90 E-value=0.017 Score=60.18 Aligned_cols=238 Identities=17% Similarity=0.149 Sum_probs=119.9
Q ss_pred ChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHH----HHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchh
Q 007913 80 TWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLA----SGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDF 155 (585)
Q Consensus 80 ~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll----~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~ 155 (585)
+..+.+.-++|..+|.|-.-.......+.||.+-++-+++ .|+..+..=+++++.+++.-+.|..-.|-+ ...+.
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~-l~~~~ 88 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYL-LWRNR 88 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHH-HSCSH
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHH-hcCCc
Confidence 4566677788888999988888888877676653444443 333333333344444443444454444432 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cccC------C--c--------cchhcc--cccCCC----CCcc
Q 007913 156 VAYIAAGNILLEAVVGAAGLARSWSSYLASMI----DSNN------S--D--------LLRFKV--DCFADG----FNLL 209 (585)
Q Consensus 156 ~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~----~~~~------~--~--------~~~~~~--~~~~~~----~~~~ 209 (585)
..-..||...+........+....+-.+.+.+ +..+ + . .|.... ++..++ .+..
T Consensus 89 ~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g~~~~~~ 168 (519)
T 2a65_A 89 FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFA 168 (519)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCCCCHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCcccccCccHHH
Confidence 11123333333222222222222222222211 1111 0 0 000000 000000 0111
Q ss_pred hHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHHhheeccc-------------CCCCCCCCCcChhHHHH
Q 007913 210 DPVAVLILLVCNGIAMSGT-RRSSWLNWISSIVSSCVIVFVIIVGFVHGK-------------TTNLDPFLPYGTEGVFE 275 (585)
Q Consensus 210 ~~~~~~~~~~~~~i~~~g~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~~~~~~~g~~~~~~ 275 (585)
.+.-.++.++...+..+|+ |-..|+.+++...-.+.++++.+-++...+ ..+++... +...+..
T Consensus 169 ~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~--~~~vw~~ 246 (519)
T 2a65_A 169 YIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLK--DPGVWIA 246 (519)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTT--CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhC--CHHHHHH
Confidence 2233444555667777899 778999999988777777666665543222 01122211 1234677
Q ss_pred HHHHHHHHh-hcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHH
Q 007913 276 AAAVVYWSY-TGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCL 321 (585)
Q Consensus 276 ~~~~~~~~~-~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l 321 (585)
+...++|++ .|+-....++.=.|+ +.|++|........-..+-++
T Consensus 247 A~gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~sll 292 (519)
T 2a65_A 247 AVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEVI 292 (519)
T ss_dssp HHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHHH
Confidence 788888888 577777777766654 578888766665555544433
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=94.86 E-value=4.2 Score=42.03 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=20.0
Q ss_pred ccccChhHHHHHhhcccccccch
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIF 98 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~ 98 (585)
|-++|.++.+++.+++-+|.|+.
T Consensus 93 kPefS~~sW~aMlF~AGmGiGl~ 115 (539)
T 4ain_A 93 APEFRTVSWISMMFAAGMGIGLM 115 (539)
T ss_dssp CCSSCHHHHHHHHHTTSCCTHHH
T ss_pred CCCCcchHHHHHHHHHhhcchhe
Confidence 56799999999999988888875
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=89.86 E-value=19 Score=36.91 Aligned_cols=24 Identities=8% Similarity=0.223 Sum_probs=19.6
Q ss_pred ccccChhHHHHHhhcccccccchh
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFV 99 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~ 99 (585)
|-+++.++.+++.+++-+|.|+..
T Consensus 88 kPefs~~sW~aMlF~aGmGiGl~f 111 (509)
T 2wsw_A 88 KPEFSTASWIFMMFASCTSAAVLF 111 (509)
T ss_dssp CCSSCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCccchHHHHHHHHhhhhHHhh
Confidence 457999999999999888888643
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=44.82 E-value=18 Score=23.26 Aligned_cols=14 Identities=21% Similarity=0.233 Sum_probs=6.3
Q ss_pred HHHHHHHHHhhccc
Q 007913 554 AVMLVYYLLVGLHA 567 (585)
Q Consensus 554 ~i~~~~y~~~~~~~ 567 (585)
++++.+|++.+||+
T Consensus 25 ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 25 IVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhhh
Confidence 34444444444443
No 11
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=40.94 E-value=22 Score=22.86 Aligned_cols=14 Identities=21% Similarity=0.074 Sum_probs=6.5
Q ss_pred HHHHHHHHHhhccc
Q 007913 554 AVMLVYYLLVGLHA 567 (585)
Q Consensus 554 ~i~~~~y~~~~~~~ 567 (585)
++.+++|++.+||+
T Consensus 26 ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 26 VVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhhhH
Confidence 34445454444443
No 12
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=25.76 E-value=62 Score=20.75 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=4.4
Q ss_pred HHHHHHHHhhcc
Q 007913 555 VMLVYYLLVGLH 566 (585)
Q Consensus 555 i~~~~y~~~~~~ 566 (585)
+++++.++.+||
T Consensus 27 ~~l~~~~~~RRR 38 (44)
T 2jwa_A 27 LGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhheehh
Confidence 333333333333
No 13
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=25.40 E-value=53 Score=22.13 Aligned_cols=12 Identities=0% Similarity=-0.028 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHh
Q 007913 552 CSAVMLVYYLLV 563 (585)
Q Consensus 552 ~~~i~~~~y~~~ 563 (585)
.+++.++.|.+|
T Consensus 23 LllL~li~~~Lw 34 (54)
T 2knc_A 23 LLLLTILVLAMW 34 (54)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444343
No 14
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=23.37 E-value=60 Score=22.98 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhcccccchhhhhhccccccCC
Q 007913 554 AVMLVYYLLVGLHATYDVAHQNQEKSNNEEG 584 (585)
Q Consensus 554 ~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 584 (585)
++|+++- +.++.+.+.+++.....++++||
T Consensus 29 i~GI~ii-lS~KckCk~~qk~r~~~p~~e~g 58 (72)
T 2jo1_A 29 ILGILIV-LSRRCRCKFNQQQRTGEPDEEEG 58 (72)
T ss_dssp HHHHHHH-HHHHHHHHHCTTTSSSCCCTTTS
T ss_pred HHHHHHH-HcCccccCCCCCCCCCCCccccc
Confidence 3444433 44554444333333334444443
No 15
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=21.60 E-value=68 Score=19.57 Aligned_cols=16 Identities=13% Similarity=0.305 Sum_probs=7.9
Q ss_pred HHHHHHHHHhhccccc
Q 007913 554 AVMLVYYLLVGLHATY 569 (585)
Q Consensus 554 ~i~~~~y~~~~~~~~~ 569 (585)
++..++||+.-|..++
T Consensus 11 ~~~~ifYFl~iRPQ~K 26 (37)
T 2rdd_B 11 VFGLIFYFMILRPQQK 26 (37)
T ss_dssp HHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHhhhHHH
Confidence 3334566665544333
Done!