BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007914
(585 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/566 (58%), Positives = 420/566 (74%), Gaps = 5/566 (0%)
Query: 19 VTASFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAERWSRTQVFIGNCYSVSPEILTRR 78
+ SFP+EVLE V S + +DR+SVSLVCK WY ERW R +VFIGNCY+VSP + RR
Sbjct: 5 IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRR 64
Query: 79 FPNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEF 138
FP +RSV LKGKP F+DFNLVP WG ++ W+ A ++ Y +LEE+RLKRM V+D+ LE
Sbjct: 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124
Query: 139 LASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFT 198
+A +F NFK+L L SC+GFSTDGLAAIA C+NL ELD++E+ ++D SG WLS FP+++T
Sbjct: 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184
Query: 199 SLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGS 258
SL LN + L SEV+ ALERLV+RC +LK LK+N+++ LE+L LL RAPQLEELGTG
Sbjct: 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG 244
Query: 259 FLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSG 318
+ ++ Y+ L A + CK + LSG W+AVP YLPA+Y+ C+ LT LNLSY +QS
Sbjct: 245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY 304
Query: 319 EFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGF 378
+ KL+ CP+L+RLWVLD +ED GLE + S C L ELRVFP++PF E +TE+G
Sbjct: 305 DLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364
Query: 379 VAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAF 438
V+VS GC +L VLYFCRQMTNAA+ TI +N PN T FRLCI+ P PDYLT EP+D F
Sbjct: 365 VSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF 424
Query: 439 GAVVKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLR 498
GA+V+ C L+RLS+SGLLTD FEYIG YAK +E LSVAFAG SD GM VL GC LR
Sbjct: 425 GAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLR 484
Query: 499 KLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMNACRRLAKQMPRLNVEVMKEDGSD 558
KLEIRDCPFG++ALL+ K E+MRSLWMS+C+V+ AC+ L ++MP+LNVEV+ E G+
Sbjct: 485 KLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP 544
Query: 559 DSQ-----ADKVYIYRTVAGPRRDAP 579
DS+ ++V+IYRTVAGPR D P
Sbjct: 545 DSRPESCPVERVFIYRTVAGPRFDMP 570
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 301 bits (770), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 187/579 (32%), Positives = 298/579 (51%), Gaps = 26/579 (4%)
Query: 25 DEVLEIVLSLLTSHRDRSSVSLVCKDWYRAERWSRTQVFIGNCYSVSPEILTRRFPNIRS 84
D+V+E V++ +T +DR S SLVC+ W++ + +R V + CY+ +P+ L+RRFPN+RS
Sbjct: 18 DDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRS 77
Query: 85 VTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFLA-SNF 143
+ LKGKPR + FNL+P NWG + W+ + L+ + +RM VSD L+ LA +
Sbjct: 78 LKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARA 137
Query: 144 PNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVL 203
+ + L L C GF+TDGL +I THC+ + L ++E+ + G WL + TSLEVL
Sbjct: 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVL 197
Query: 204 NFANLT-SEVNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQD 262
NF ++++ LE + C+SL +KV LE L A LEE GS +D
Sbjct: 198 NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNED 256
Query: 263 L-TARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFA 321
+ Y +L C+ GL P +P L+ A + L+L Y L++ +
Sbjct: 257 IGMPEKYMNLVFPRKLCR-----LGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHC 311
Query: 322 KLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRV-FPADPFDEEIIHG-VTEEGFV 379
L+ CP L L + + D+GLE + C L+ LR+ AD E G V++ G +
Sbjct: 312 TLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371
Query: 380 AVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFG 439
A++ GC+ L Y+ + +TN ++ +I N FRL ++ + +T+ P+D
Sbjct: 372 ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR--EERITDLPLDNGVR 429
Query: 440 AVVKTCSKLQRLSV---SGLLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPK 496
+++ C KL+R + G LTDL YIG+Y+ N+ + + + G SD G+ GCP
Sbjct: 430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPN 489
Query: 497 LRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMNACRRLAKQMPRLNVEVM---- 552
L+KLE+R C F A+ + + K S+R LW+ +M + P N+E++
Sbjct: 490 LQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRR 549
Query: 553 ----KEDGSDDSQADKVYI--YRTVAGPRRDAPPSVLTL 585
+ G +I Y ++AG R D P +V L
Sbjct: 550 VPEVNQQGEIREMEHPAHILAYYSLAGQRTDCPTTVRVL 588
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 97/240 (40%), Gaps = 36/240 (15%)
Query: 22 SFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYR-AERWSRTQVFIGNCYSVSPEILTRRFP 80
S PDE+L + S L + VS VCK WYR A S Q ++ P++ R
Sbjct: 11 SLPDELLLGIFSCLCL-PELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLS 69
Query: 81 NIRSVTLKGKPR----------FSDFNLVPPNWGADIH--AWLVAFAAKYPFLEELRLKR 128
+ V PR FS F + + + + L ++ L+ L L+
Sbjct: 70 --QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 127
Query: 129 MAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGS 188
+ +SD + LA N N L+L C GFS L + + C L EL++ S
Sbjct: 128 LRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL----------S 176
Query: 189 WLSCFPESFTSLEVLNFANLTSEVNTDA---------LERLVSRCKSLKVLKVNKSISLE 239
W F E + V + + +++N L LV RC +L L ++ S+ L+
Sbjct: 177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 236
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 440 AVVKTCSKLQRLSVSGL-LTDLTFEYIGKYAKNLETLSVA-FAGRSDRGMQCVLEGCPKL 497
++ CSKLQ LS+ GL L+D + K + NL L+++ +G S+ +Q +L C +L
Sbjct: 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSRL 170
Query: 498 RKLEIRDC 505
+L + C
Sbjct: 171 DELNLSWC 178
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 72/163 (44%), Gaps = 37/163 (22%)
Query: 168 HCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSEV----NTDALERL--- 220
+ NL L++ N I D S LS TSL+ LNF N +++ N LERL
Sbjct: 127 NLTNLNRLELSSNTISDISA--LS----GLTSLQQLNFGNQVTDLKPLANLTTLERLDIS 180
Query: 221 ---VSRCKSL-------KVLKVNKSIS-------LEQLQRLLVRAPQLEELGTGSFLQDL 263
VS L ++ N IS L L L + QL+++GT + L +L
Sbjct: 181 SNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNL 240
Query: 264 TARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLT 306
T DL+ A N N+ LSGL + L L A N +N++
Sbjct: 241 T-----DLDLANNQISNLAPLSGLTKLTELKLGA--NQISNIS 276
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 72/163 (44%), Gaps = 37/163 (22%)
Query: 168 HCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSEV----NTDALERL--- 220
+ NL L++ N I D S LS TSL+ LNF N +++ N LERL
Sbjct: 127 NLTNLNRLELSSNTISDISA--LS----GLTSLQQLNFGNQVTDLKPLANLTTLERLDIS 180
Query: 221 ---VSRCKSL-------KVLKVNKSIS-------LEQLQRLLVRAPQLEELGTGSFLQDL 263
VS L ++ N IS L L L + QL+++GT + L +L
Sbjct: 181 SNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNL 240
Query: 264 TARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLT 306
T DL+ A N N+ LSGL + L L A N +N++
Sbjct: 241 T-----DLDLANNQISNLAPLSGLTKLTELKLGA--NQISNIS 276
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 72/163 (44%), Gaps = 37/163 (22%)
Query: 168 HCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSEV----NTDALERL--- 220
+ NL L++ N I D S LS TSL+ L+F N +++ N LERL
Sbjct: 132 NLTNLNRLELSSNTISDISA--LS----GLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 185
Query: 221 ---VSRCKSL-------KVLKVNKSIS-------LEQLQRLLVRAPQLEELGTGSFLQDL 263
VS L ++ N IS L L L + QL+++GT + L +L
Sbjct: 186 SNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNL 245
Query: 264 TARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLT 306
T DL+ A N N+ LSGL + L L A N +N++
Sbjct: 246 T-----DLDLANNQISNLAPLSGLTKLTELKLGA--NQISNIS 281
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 73/165 (44%), Gaps = 37/165 (22%)
Query: 168 HCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSEV----NTDALERL--- 220
+ NL L++ N I D S LS TSL+ L+F N +++ N LERL
Sbjct: 131 NLTNLNRLELSSNTISDISA--LS----GLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 184
Query: 221 ---VSRCKSL-------KVLKVNKSIS-------LEQLQRLLVRAPQLEELGTGSFLQDL 263
VS L ++ N IS L L L + QL+++GT + L +L
Sbjct: 185 SNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNL 244
Query: 264 TARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFL 308
T DL+ A N N+ LSGL + L L A N +N++ L
Sbjct: 245 T-----DLDLANNQISNLAPLSGLTKLTELKLGA--NQISNISPL 282
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 26/158 (16%)
Query: 168 HCKNLTELDIQENGIEDSSG-SWLSCFPE-SFTSLEVLNF---ANLTSEVNTDALERLVS 222
+ NL L++ N I D S S L+ + SF+S +V + ANLT+ D VS
Sbjct: 127 NLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVS 186
Query: 223 RCKSL-------KVLKVNKSIS-------LEQLQRLLVRAPQLEELGTGSFLQDLTARPY 268
L ++ N IS L L L + QL+++GT + L +LT
Sbjct: 187 DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLT---- 242
Query: 269 ADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLT 306
DL+ A N N+ LSGL + L L A N +N++
Sbjct: 243 -DLDLANNQISNLAPLSGLTKLTELKLGA--NQISNIS 277
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 26/158 (16%)
Query: 168 HCKNLTELDIQENGIEDSSG-SWLSCFPE-SFTSLEVLNF---ANLTSEVNTDALERLVS 222
+ NL L++ N I D S S L+ + SF+S +V + ANLT+ D VS
Sbjct: 127 NLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVS 186
Query: 223 RCKSL-------KVLKVNKSIS-------LEQLQRLLVRAPQLEELGTGSFLQDLTARPY 268
L ++ N IS L L L + QL+++GT + L +LT
Sbjct: 187 DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLT---- 242
Query: 269 ADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLT 306
DL+ A N N+ LSGL + L L A N +N++
Sbjct: 243 -DLDLANNQISNLAPLSGLTKLTELKLGA--NQISNIS 277
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 71/164 (43%), Gaps = 38/164 (23%)
Query: 168 HCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFA-----NLTSEVNTDALERL-- 220
+ NL L++ N I D S LS TSL+ LNF+ +L N LERL
Sbjct: 127 NLTNLNRLELSSNTISDISA--LS----GLTSLQQLNFSSNQVTDLKPLANLTTLERLDI 180
Query: 221 ----VSRCKSL-------KVLKVNKSIS-------LEQLQRLLVRAPQLEELGTGSFLQD 262
VS L ++ N IS L L L + QL+++GT + L +
Sbjct: 181 SSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTN 240
Query: 263 LTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLT 306
LT DL+ A N N+ LSGL + L L A N +N++
Sbjct: 241 LT-----DLDLANNQISNLAPLSGLTKLTELKLGA--NQISNIS 277
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 14/113 (12%)
Query: 366 DEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGL 425
DEE ++G TE ++ + H ++ + +V + Q+ P+ + I TP
Sbjct: 17 DEEKLYGCTENKLGIANWLKDQGHELITTSDEEGGNSV--LDQHIPDAD---IIITTPFH 71
Query: 426 PDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTD-LTFEYIGKYAKNLETLSV 477
P Y+T E +D+A KL+ + V+G+ +D + +YI + K + L V
Sbjct: 72 PAYITKERIDKA--------KKLKLVVVAGVGSDHIDLDYINQTGKKISVLEV 116
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 14/113 (12%)
Query: 366 DEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGL 425
DEE ++G TE ++ + H ++ + +V + Q+ P+ + I TP
Sbjct: 16 DEEKLYGCTENKLGIANWLKDQGHELITTSDKEGGNSV--LDQHIPDAD---IIITTPFH 70
Query: 426 PDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTD-LTFEYIGKYAKNLETLSV 477
P Y+T E +D+A KL+ + V+G+ +D + +YI + K + L V
Sbjct: 71 PAYITKERIDKA--------KKLKLVVVAGVGSDHIDLDYINQTGKKISVLEV 115
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 440 AVVKTCSKLQRLSVSGL-LTDLTFEYIGKYAKNLETLSVA-FAGRSDRGMQCVLEGCPKL 497
++ CSKLQ LS+ GL L+D + K + NL L+++ +G S+ +Q +L C +L
Sbjct: 74 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSRL 132
Query: 498 RKLEIRDC 505
+L + C
Sbjct: 133 DELNLSWC 140
>pdb|3EZ1|A Chain A, Crystal Structure Of Putative Aminotransferase (Mocr
Family) (Yp_604413.1) From Deinococcus Geothermalis Dsm
11300 At 2.60 A Resolution
pdb|3EZ1|B Chain B, Crystal Structure Of Putative Aminotransferase (Mocr
Family) (Yp_604413.1) From Deinococcus Geothermalis Dsm
11300 At 2.60 A Resolution
Length = 423
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 23/88 (26%)
Query: 180 NGIEDSSGSWLSCFPES----------FTSLEVLNFANLTSEV-----NTDALERLVSRC 224
+G+ S+G WLS P+ F L+ L F LT + + DA+ERL
Sbjct: 111 HGVRGSTGPWLSQTPKXIVTVPGYDRHFLLLQTLGFELLTVDXQSDGPDVDAVERLAGTD 170
Query: 225 KSLK-VLKV-------NKSISLEQLQRL 244
S+K +L V ++ISLE+ +RL
Sbjct: 171 PSVKGILFVPTYSNPGGETISLEKARRL 198
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 487 MQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVT-MNACRR-LAKQM 544
++ + E CP L+ L + + + + L+K E+++SL + C VT +NA R + K +
Sbjct: 85 LEVLAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNAYRENVFKLL 144
Query: 545 PRLNVEVMKEDGSD 558
P +VM DG D
Sbjct: 145 P----QVMYLDGYD 154
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 482 RSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVT-MNACRR- 539
R G++ + E CP L L + + + + L+K E+++SL + C VT +N R
Sbjct: 75 RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYREN 134
Query: 540 LAKQMPRL 547
+ K +P+L
Sbjct: 135 VFKLLPQL 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,638,910
Number of Sequences: 62578
Number of extensions: 661224
Number of successful extensions: 1521
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1470
Number of HSP's gapped (non-prelim): 59
length of query: 585
length of database: 14,973,337
effective HSP length: 104
effective length of query: 481
effective length of database: 8,465,225
effective search space: 4071773225
effective search space used: 4071773225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)