Query 007916
Match_columns 585
No_of_seqs 286 out of 3243
Neff 10.9
Searched_HMMs 46136
Date Thu Mar 28 17:03:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007916.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007916hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 1.4E-32 3.1E-37 250.4 17.4 375 20-553 72-460 (483)
2 PLN00113 leucine-rich repeat r 99.9 5.2E-24 1.1E-28 237.6 15.4 115 296-422 349-463 (968)
3 PLN00113 leucine-rich repeat r 99.9 1.1E-23 2.4E-28 235.1 15.6 308 221-556 232-558 (968)
4 KOG2120 SCF ubiquitin ligase, 99.9 5.9E-23 1.3E-27 179.5 8.7 219 20-257 98-346 (419)
5 KOG4341 F-box protein containi 99.9 1.1E-22 2.4E-27 186.2 10.4 319 77-529 135-461 (483)
6 KOG4194 Membrane glycoprotein 99.8 2.8E-21 6E-26 184.0 0.3 340 119-531 78-427 (873)
7 KOG4194 Membrane glycoprotein 99.8 1.4E-19 3E-24 172.6 0.8 367 121-555 54-426 (873)
8 KOG0444 Cytoskeletal regulator 99.8 3.1E-20 6.7E-25 178.4 -3.7 375 119-571 7-393 (1255)
9 cd00116 LRR_RI Leucine-rich re 99.7 2.9E-16 6.4E-21 152.8 19.3 78 468-545 219-303 (319)
10 cd00116 LRR_RI Leucine-rich re 99.7 2.7E-15 5.9E-20 146.0 20.7 218 297-531 75-318 (319)
11 KOG0444 Cytoskeletal regulator 99.6 6.5E-18 1.4E-22 162.7 -3.7 337 118-506 31-373 (1255)
12 KOG1909 Ran GTPase-activating 99.6 1.9E-14 4.2E-19 129.8 14.6 158 385-549 156-329 (382)
13 PLN03210 Resistant to P. syrin 99.5 9.7E-15 2.1E-19 163.6 8.9 310 145-531 590-904 (1153)
14 KOG2120 SCF ubiquitin ligase, 99.5 1.6E-14 3.5E-19 127.1 7.1 203 303-524 185-391 (419)
15 KOG1909 Ran GTPase-activating 99.5 1.9E-13 4.1E-18 123.5 13.7 185 111-363 22-224 (382)
16 KOG1947 Leucine rich repeat pr 99.5 9.3E-14 2E-18 143.8 13.4 285 195-543 158-451 (482)
17 KOG0618 Serine/threonine phosp 99.5 3.1E-14 6.6E-19 143.9 7.5 218 302-540 240-499 (1081)
18 PLN03210 Resistant to P. syrin 99.4 1E-12 2.2E-17 147.5 9.4 200 295-531 673-880 (1153)
19 KOG0618 Serine/threonine phosp 99.3 2.1E-13 4.5E-18 138.0 -1.0 317 167-535 196-515 (1081)
20 KOG1947 Leucine rich repeat pr 99.3 1.3E-11 2.8E-16 127.8 10.1 193 295-528 261-460 (482)
21 KOG0472 Leucine-rich repeat pr 99.2 1.2E-13 2.5E-18 126.8 -7.6 107 408-533 432-541 (565)
22 KOG3207 Beta-tubulin folding c 99.1 1.3E-11 2.7E-16 115.0 2.0 187 297-507 140-338 (505)
23 KOG3207 Beta-tubulin folding c 99.1 8.5E-11 1.8E-15 109.6 5.1 114 117-235 119-232 (505)
24 PRK15387 E3 ubiquitin-protein 99.1 1.6E-10 3.5E-15 120.6 6.5 70 146-236 203-273 (788)
25 KOG0472 Leucine-rich repeat pr 99.0 2.9E-12 6.4E-17 117.7 -7.7 53 476-532 418-470 (565)
26 PRK15387 E3 ubiquitin-protein 99.0 1.1E-09 2.4E-14 114.4 8.4 93 119-236 201-293 (788)
27 PF12937 F-box-like: F-box-lik 98.9 2E-09 4.3E-14 70.2 3.1 36 20-56 1-36 (47)
28 COG5238 RNA1 Ran GTPase-activa 98.8 2.8E-08 6.2E-13 87.2 10.1 238 299-570 26-295 (388)
29 PF14580 LRR_9: Leucine-rich r 98.8 1.8E-09 3.9E-14 91.9 1.3 143 409-569 17-162 (175)
30 PRK15370 E3 ubiquitin-protein 98.7 2E-07 4.3E-12 98.5 12.3 130 386-541 304-436 (754)
31 KOG3665 ZYG-1-like serine/thre 98.6 2.9E-07 6.4E-12 96.2 11.9 149 385-547 121-277 (699)
32 PF14580 LRR_9: Leucine-rich r 98.5 6.1E-08 1.3E-12 82.6 2.6 128 385-528 18-148 (175)
33 KOG3665 ZYG-1-like serine/thre 98.5 8E-07 1.7E-11 93.0 11.1 159 302-478 121-283 (699)
34 KOG4237 Extracellular matrix p 98.5 9.8E-09 2.1E-13 94.8 -2.6 87 442-531 270-357 (498)
35 KOG2982 Uncharacterized conser 98.5 4.3E-08 9.3E-13 87.2 1.3 95 293-396 61-156 (418)
36 COG5238 RNA1 Ran GTPase-activa 98.5 8.3E-06 1.8E-10 72.1 14.7 134 409-549 90-243 (388)
37 PF00646 F-box: F-box domain; 98.4 1.4E-07 3E-12 62.0 2.4 37 19-56 2-38 (48)
38 KOG2982 Uncharacterized conser 98.4 2.3E-07 5.1E-12 82.7 4.4 208 120-338 46-259 (418)
39 KOG4237 Extracellular matrix p 98.4 6.4E-08 1.4E-12 89.6 0.4 92 400-507 263-358 (498)
40 PRK15370 E3 ubiquitin-protein 98.4 1.7E-06 3.6E-11 91.6 9.8 106 386-513 325-433 (754)
41 smart00256 FBOX A Receptor for 98.3 1.3E-06 2.9E-11 55.1 4.4 33 23-56 1-33 (41)
42 KOG1259 Nischarin, modulator o 98.2 2.4E-07 5.3E-12 82.6 0.1 129 385-532 283-411 (490)
43 KOG3864 Uncharacterized conser 98.1 5E-06 1.1E-10 70.3 4.8 102 448-551 103-210 (221)
44 KOG0617 Ras suppressor protein 98.0 4.2E-08 9.2E-13 79.9 -8.2 81 118-208 32-112 (264)
45 KOG1259 Nischarin, modulator o 98.0 3.9E-06 8.4E-11 75.1 3.1 70 112-184 175-251 (490)
46 KOG4658 Apoptotic ATPase [Sign 97.9 6.1E-06 1.3E-10 88.9 3.0 106 143-258 544-651 (889)
47 KOG1859 Leucine-rich repeat pr 97.8 3.5E-06 7.7E-11 84.5 -0.0 106 409-532 185-291 (1096)
48 PF13855 LRR_8: Leucine rich r 97.7 3.3E-06 7E-11 58.7 -1.9 61 470-532 1-61 (61)
49 KOG4308 LRR-containing protein 97.7 4.6E-05 9.9E-10 76.5 5.1 229 301-545 202-457 (478)
50 KOG4658 Apoptotic ATPase [Sign 97.7 3.1E-05 6.8E-10 83.6 4.1 154 169-361 522-677 (889)
51 KOG0617 Ras suppressor protein 97.6 2.4E-06 5.2E-11 69.9 -3.8 132 117-262 54-186 (264)
52 PF12799 LRR_4: Leucine Rich r 97.5 0.0001 2.2E-09 46.7 2.8 35 471-507 2-36 (44)
53 PF12799 LRR_4: Leucine Rich r 97.5 0.00012 2.6E-09 46.4 3.1 38 495-534 1-38 (44)
54 KOG4308 LRR-containing protein 97.4 8.1E-05 1.8E-09 74.7 3.1 211 305-531 89-329 (478)
55 KOG3864 Uncharacterized conser 97.4 0.00019 4.2E-09 61.0 3.7 77 471-549 102-180 (221)
56 PF13855 LRR_8: Leucine rich r 97.2 0.00035 7.5E-09 48.4 2.8 15 221-235 45-59 (61)
57 PLN03150 hypothetical protein; 96.9 0.001 2.2E-08 70.2 5.3 83 448-533 420-503 (623)
58 KOG1859 Leucine-rich repeat pr 96.9 8.4E-05 1.8E-09 75.0 -2.8 84 442-534 183-268 (1096)
59 PLN03150 hypothetical protein; 96.8 0.0017 3.6E-08 68.7 5.4 63 443-507 439-502 (623)
60 KOG2123 Uncharacterized conser 96.8 0.00038 8.2E-09 62.1 0.4 113 410-540 18-135 (388)
61 smart00367 LRR_CC Leucine-rich 96.5 0.0026 5.7E-08 35.0 2.5 24 519-542 1-25 (26)
62 KOG2123 Uncharacterized conser 96.5 0.00056 1.2E-08 61.1 -0.5 104 118-231 18-123 (388)
63 KOG2739 Leucine-rich acidic nu 96.4 0.0011 2.4E-08 59.0 1.0 42 143-184 64-105 (260)
64 COG4886 Leucine-rich repeat (L 96.4 0.0025 5.5E-08 63.9 3.4 103 144-259 116-219 (394)
65 COG4886 Leucine-rich repeat (L 96.4 0.002 4.4E-08 64.5 2.8 60 468-532 230-289 (394)
66 PF13516 LRR_6: Leucine Rich r 96.4 0.0033 7.2E-08 33.8 2.4 23 519-541 1-23 (24)
67 KOG2739 Leucine-rich acidic nu 96.3 0.0031 6.7E-08 56.2 2.8 66 468-533 63-129 (260)
68 KOG2997 F-box protein FBX9 [Ge 96.0 0.0078 1.7E-07 54.8 4.1 41 16-56 103-147 (366)
69 KOG1644 U2-associated snRNP A' 95.8 0.0055 1.2E-07 52.3 2.2 88 443-531 61-151 (233)
70 smart00368 LRR_RI Leucine rich 95.6 0.018 3.9E-07 32.2 3.0 26 520-545 2-27 (28)
71 PLN03215 ascorbic acid mannose 95.6 0.011 2.4E-07 56.7 3.4 38 19-56 3-40 (373)
72 KOG4579 Leucine-rich repeat (L 95.4 0.0034 7.4E-08 50.0 -0.3 118 446-569 53-170 (177)
73 KOG0281 Beta-TrCP (transducin 95.1 0.028 6.1E-07 51.7 4.2 38 18-56 73-114 (499)
74 KOG1644 U2-associated snRNP A' 95.0 0.015 3.2E-07 49.8 2.2 97 447-548 43-143 (233)
75 PF13516 LRR_6: Leucine Rich r 94.8 0.018 3.8E-07 30.9 1.3 20 470-489 2-21 (24)
76 smart00367 LRR_CC Leucine-rich 94.7 0.036 7.9E-07 30.3 2.6 21 470-490 2-23 (26)
77 KOG0532 Leucine-rich repeat (L 93.9 0.0047 1E-07 61.1 -3.6 80 167-258 118-198 (722)
78 PRK15386 type III secretion pr 93.8 0.037 8.1E-07 53.9 2.3 54 301-361 50-103 (426)
79 KOG4579 Leucine-rich repeat (L 93.7 0.028 6.2E-07 44.9 1.1 37 221-258 96-132 (177)
80 KOG0531 Protein phosphatase 1, 93.5 0.02 4.3E-07 57.6 -0.2 103 385-507 94-198 (414)
81 KOG3763 mRNA export factor TAP 93.1 0.15 3.2E-06 50.9 5.0 93 461-557 209-311 (585)
82 smart00368 LRR_RI Leucine rich 92.3 0.19 4.2E-06 28.0 2.8 20 471-490 3-22 (28)
83 KOG0531 Protein phosphatase 1, 92.0 0.048 1E-06 54.9 0.3 106 409-534 93-200 (414)
84 PRK15386 type III secretion pr 91.2 0.39 8.5E-06 47.1 5.4 12 303-314 156-167 (426)
85 PF13013 F-box-like_2: F-box-l 90.2 0.47 1E-05 36.8 4.0 30 19-49 21-50 (109)
86 KOG0532 Leucine-rich repeat (L 90.1 0.073 1.6E-06 53.1 -0.5 60 468-532 187-246 (722)
87 PF13504 LRR_7: Leucine rich r 89.2 0.29 6.3E-06 23.6 1.4 14 520-533 1-14 (17)
88 KOG3763 mRNA export factor TAP 83.4 2 4.4E-05 43.2 5.1 38 143-180 217-254 (585)
89 KOG0274 Cdc4 and related F-box 82.9 0.51 1.1E-05 48.7 0.9 42 14-56 102-143 (537)
90 PF00560 LRR_1: Leucine Rich R 80.2 1 2.2E-05 23.4 1.0 13 521-533 1-13 (22)
91 PF07723 LRR_2: Leucine Rich R 79.1 1.3 2.9E-05 24.1 1.3 24 472-495 2-26 (26)
92 KOG3735 Tropomodulin and leiom 69.1 10 0.00022 35.7 5.2 83 446-528 198-291 (353)
93 PF09372 PRANC: PRANC domain; 68.4 5.1 0.00011 30.6 2.8 26 18-44 70-95 (97)
94 smart00370 LRR Leucine-rich re 65.9 5.1 0.00011 21.6 1.7 16 519-534 1-16 (26)
95 smart00369 LRR_TYP Leucine-ric 65.9 5.1 0.00011 21.6 1.7 16 519-534 1-16 (26)
96 KOG3735 Tropomodulin and leiom 58.2 21 0.00045 33.8 5.1 89 458-546 186-281 (353)
97 smart00365 LRR_SD22 Leucine-ri 57.8 8.7 0.00019 21.0 1.6 14 520-533 2-15 (26)
98 PF13306 LRR_5: Leucine rich r 57.1 2.6 5.7E-05 34.0 -0.8 81 443-529 32-112 (129)
99 KOG3926 F-box proteins [Amino 50.7 14 0.0003 33.6 2.6 37 19-55 201-237 (332)
100 smart00364 LRR_BAC Leucine-ric 33.2 26 0.00056 19.2 1.0 14 520-533 2-15 (26)
101 PF07735 FBA_2: F-box associat 25.9 2.1E+02 0.0046 19.8 5.1 20 497-516 34-53 (70)
102 PF14287 DUF4368: Domain of un 21.0 1.7E+02 0.0038 20.7 3.7 37 532-573 29-65 (71)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=100.00 E-value=1.4e-32 Score=250.38 Aligned_cols=375 Identities=24% Similarity=0.410 Sum_probs=262.1
Q ss_pred hcCCCHHHHHHHHhccCChhHHHHHHHHhHHHHHHHhh--hccEEEeccccCCChhHHHhhCCCccEEEecCCCCcccCc
Q 007916 20 TASFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAERW--SRTQVFIGNCYSVSPEILTRRFPNIRSVTLKGKPRFSDFN 97 (585)
Q Consensus 20 i~~LP~eil~~If~~L~~~~d~~~~~~Vck~w~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~l~~l~l~~~~~~~~~~ 97 (585)
.-.||+|++..||++| +.+.+++++.+|+.|+-.+.. .|.++.+... +...+.+
T Consensus 72 ~~~LPpEl~lkvFS~L-Dtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~-----------------------~rDv~g~ 127 (483)
T KOG4341|consen 72 SRSLPPELLLKVFSML-DTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTF-----------------------QRDVDGG 127 (483)
T ss_pred cccCCHHHHHHHHHHH-hHHHHHHHHHHHHHhhhhhhccccceeeehhcc-----------------------hhcCCCc
Confidence 3479999999999999 488999999999999998763 2444433321 1110100
Q ss_pred cCCCCCCCchHHHHHHHHhh-CCCCcEEEeccc-ccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEE
Q 007916 98 LVPPNWGADIHAWLVAFAAK-YPFLEELRLKRM-AVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTEL 175 (585)
Q Consensus 98 ~~~~~~~~~~~~~l~~l~~~-~~~L~~L~l~~~-~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L 175 (585)
.+..+.++ ...||.|.+.++ .+.+..+..+...||++++|.+.+|.++++..+..+...|++|+.|
T Consensus 128 ------------VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l 195 (483)
T KOG4341|consen 128 ------------VVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHL 195 (483)
T ss_pred ------------ceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhh
Confidence 02222222 234555555555 4445555555555666666666666656555555555556666555
Q ss_pred EcccCCCCccccccccccccCCCCcCEEEeccCCCCCChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhCCcccccc
Q 007916 176 DIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELG 255 (585)
Q Consensus 176 ~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 255 (585)
++..|. .+++..+..+...|++|++|+++.|..
T Consensus 196 ~L~~c~-----------------------------~iT~~~Lk~la~gC~kL~~lNlSwc~q------------------ 228 (483)
T KOG4341|consen 196 NLHSCS-----------------------------SITDVSLKYLAEGCRKLKYLNLSWCPQ------------------ 228 (483)
T ss_pred hhcccc-----------------------------hhHHHHHHHHHHhhhhHHHhhhccCch------------------
Confidence 554431 033334444444555555555554432
Q ss_pred CcccccccCCCchhhHHHHhhcCCcccccccccccCcCCHHHHhhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEe
Q 007916 256 TGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWV 335 (585)
Q Consensus 256 l~~~~~~~~~~~~~~l~~~~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l 335 (585)
+....+..+.+++..++.+..
T Consensus 229 -----------------------------------------------------------i~~~gv~~~~rG~~~l~~~~~ 249 (483)
T KOG4341|consen 229 -----------------------------------------------------------ISGNGVQALQRGCKELEKLSL 249 (483)
T ss_pred -----------------------------------------------------------hhcCcchHHhccchhhhhhhh
Confidence 222223333333333333333
Q ss_pred ccc--CChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHHHHHhcCccchhh-hccCCCCCHHHHHHHHHhCCC
Q 007916 336 LDT--VEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYV-LYFCRQMTNAAVATIVQNCPN 412 (585)
Q Consensus 336 ~~~--~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L-~~~~~~l~~~~l~~l~~~~~~ 412 (585)
.+| ..++.+..+...++-+.++++.. |.. ++|.++..+..+|..|+.+ ..+|+++++..+..+.+.+++
T Consensus 250 kGC~e~~le~l~~~~~~~~~i~~lnl~~-------c~~-lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 250 KGCLELELEALLKAAAYCLEILKLNLQH-------CNQ-LTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN 321 (483)
T ss_pred cccccccHHHHHHHhccChHhhccchhh-------hcc-ccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence 333 23344555556666677777666 445 9999999999999999999 678999999999999999999
Q ss_pred CceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc--CCChhHHHHHhhcCccccceeccccc-CChHHHHH
Q 007916 413 FTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG--LLTDLTFEYIGKYAKNLETLSVAFAG-RSDRGMQC 489 (585)
Q Consensus 413 L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~--~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~l~~ 489 (585)
|+.+.+.+| .+++ +.++..+..+|+.|+.+++.+ .+.|..+..++.+|+.|++|+++.|. +||+|+..
T Consensus 322 L~~l~l~~c-----~~fs----d~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~ 392 (483)
T KOG4341|consen 322 LQVLELSGC-----QQFS----DRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRH 392 (483)
T ss_pred eEEEecccc-----chhh----hhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhh
Confidence 999999885 4588 889999999999999999977 67777899999999999999999996 89999988
Q ss_pred HHh---cCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccc-cCHHHHHHHHhhCCCCcEEEec
Q 007916 490 VLE---GCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACN-VTMNACRRLAKQMPRLNVEVMK 553 (585)
Q Consensus 490 l~~---~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~-it~~~~~~~~~~~p~l~~~~~~ 553 (585)
+.. +...|+.+.+++|+.+.+...+-+..|++|+.+++.+|+ ++.+++..++..+|++.|.-+-
T Consensus 393 l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 393 LSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred hhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 744 356899999999998444444788999999999999998 9999999999999998775433
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=5.2e-24 Score=237.65 Aligned_cols=115 Identities=14% Similarity=0.125 Sum_probs=52.3
Q ss_pred HHHhhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccCh
Q 007916 296 PALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTE 375 (585)
Q Consensus 296 ~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 375 (585)
+..+..+++|+.|++++|.+... ++..+..+++|+.|.+.++.....++..+..+++|+.|++.+|. ++.
T Consensus 349 p~~l~~~~~L~~L~Ls~n~l~~~-~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~---------l~~ 418 (968)
T PLN00113 349 PKNLGKHNNLTVLDLSTNNLTGE-IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS---------FSG 418 (968)
T ss_pred ChHHhCCCCCcEEECCCCeeEee-CChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE---------eee
Confidence 33344455555555555543322 12222334455555554443233333344555666666666543 221
Q ss_pred hhHHHHHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccC
Q 007916 376 EGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMT 422 (585)
Q Consensus 376 ~~~~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~ 422 (585)
.....+ ..+++|+.|+++.+.+++.....+ ..+++|+.|++++|.
T Consensus 419 ~~p~~~-~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 419 ELPSEF-TKLPLVYFLDISNNNLQGRINSRK-WDMPSLQMLSLARNK 463 (968)
T ss_pred ECChhH-hcCCCCCEEECcCCcccCccChhh-ccCCCCcEEECcCce
Confidence 111111 235566666665555554322222 245666666666543
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=1.1e-23 Score=235.05 Aligned_cols=308 Identities=15% Similarity=0.105 Sum_probs=148.9
Q ss_pred HhcCCCCcEEEecCCcchhHHHHHHHhCCccccccCcccccccCCCchhhHHHHhhcCCcccccccccccCcCCHHHHhh
Q 007916 221 VSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYN 300 (585)
Q Consensus 221 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~l~~~~~~~~~~l~~~~~ 300 (585)
+..+++|++|++++|.....++..+..+++|+.|++..+... ..++..+..+++|+.|....+.-...++..+.
T Consensus 232 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~------~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 232 IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS------GPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred HhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee------ccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence 344455555555554433334444555555555555443211 01112222334444444222211223344445
Q ss_pred cCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHHH
Q 007916 301 SCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVA 380 (585)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 380 (585)
.+++|+.|++++|.+... .+..+..+++|+.|++.++.....++..+..+++|+.|++++|. ++......
T Consensus 306 ~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~---------l~~~~p~~ 375 (968)
T PLN00113 306 QLQNLEILHLFSNNFTGK-IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN---------LTGEIPEG 375 (968)
T ss_pred CCCCCcEEECCCCccCCc-CChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe---------eEeeCChh
Confidence 556666666666554332 23334556666666666554333344444555666666666543 11100001
Q ss_pred HHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCC------------------CCCCCCCcchhhHHHHH
Q 007916 381 VSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGL------------------PDYLTNEPMDEAFGAVV 442 (585)
Q Consensus 381 ~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~------------------~~~l~~~~~~~~l~~~~ 442 (585)
+. .+++|+.|.+..+.++......+. .+++|+.|++++|...+ .+.++ ..+....
T Consensus 376 ~~-~~~~L~~L~l~~n~l~~~~p~~~~-~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-----~~~~~~~ 448 (968)
T PLN00113 376 LC-SSGNLFKLILFSNSLEGEIPKSLG-ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQ-----GRINSRK 448 (968)
T ss_pred Hh-CcCCCCEEECcCCEecccCCHHHh-CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCccc-----CccChhh
Confidence 11 133344443333333322222222 34444444444332100 00111 1111222
Q ss_pred hcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcC
Q 007916 443 KTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYES 521 (585)
Q Consensus 443 ~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~ 521 (585)
..+++|+.|++++ .+.......+ ..++|+.|++++|+++.. +...+..+++|+.|++++|.++.. ++..+..+++
T Consensus 449 ~~l~~L~~L~L~~n~~~~~~p~~~--~~~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~ 524 (968)
T PLN00113 449 WDMPSLQMLSLARNKFFGGLPDSF--GSKRLENLDLSRNQFSGA-VPRKLGSLSELMQLKLSENKLSGE-IPDELSSCKK 524 (968)
T ss_pred ccCCCCcEEECcCceeeeecCccc--ccccceEEECcCCccCCc-cChhhhhhhccCEEECcCCcceee-CChHHcCccC
Confidence 3456666666655 2221111111 346788888888876543 223346678899999999988433 4456778899
Q ss_pred CcEEEccccccCHHHHHHHHhhCCCCcEEEeccCC
Q 007916 522 MRSLWMSACNVTMNACRRLAKQMPRLNVEVMKEDG 556 (585)
Q Consensus 522 L~~L~l~~~~it~~~~~~~~~~~p~l~~~~~~~~~ 556 (585)
|++|+|++|.++......+ ..++++..-.+..+.
T Consensus 525 L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~ 558 (968)
T PLN00113 525 LVSLDLSHNQLSGQIPASF-SEMPVLSQLDLSQNQ 558 (968)
T ss_pred CCEEECCCCcccccCChhH-hCcccCCEEECCCCc
Confidence 9999999999775443334 346666554444443
No 4
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=5.9e-23 Score=179.49 Aligned_cols=219 Identities=22% Similarity=0.316 Sum_probs=148.9
Q ss_pred hcCCCHHHHHHHHhccCChhHHHHHHHHhHHHHHHHhhh--ccEEEeccccCCCh---hHHHhhC---------------
Q 007916 20 TASFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAERWS--RTQVFIGNCYSVSP---EILTRRF--------------- 79 (585)
Q Consensus 20 i~~LP~eil~~If~~L~~~~d~~~~~~Vck~w~~~~~~~--~~~~~~~~~~~~~~---~~l~~~~--------------- 79 (585)
+..|||||++.||+.|+ .+++.+++.|||+|++++... |..+++.... ..| ..+.++.
T Consensus 98 ~~slpDEill~IFs~L~-kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~-i~p~~l~~l~~rgV~v~Rlar~~~~~pr 175 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLC-KKELLKVSGVCKRFYRLASDESLWQTLDLTGRN-IHPDVLGRLLSRGVIVFRLARSFMDQPR 175 (419)
T ss_pred cccCCHHHHHHHHHhcc-HHHHHHHHHHHHHHhhccccccceeeeccCCCc-cChhHHHHHHhCCeEEEEcchhhhcCch
Confidence 78999999999999996 889999999999999997744 5555544322 122 1222221
Q ss_pred ---------CCccEEEecCCCCcccCccCCCCCCCchHHHHHHHHhhCCCCcEEEecccccChHHHHHHHhhCCCccEEE
Q 007916 80 ---------PNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFLASNFPNFKLLS 150 (585)
Q Consensus 80 ---------~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~ 150 (585)
..++.++++.. ...-.-+..+...|..|+.|.+.+..+.|.....+++ -.+|+.|+
T Consensus 176 lae~~~~frsRlq~lDLS~s--------------~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~ln 240 (419)
T KOG2120|consen 176 LAEHFSPFRSRLQHLDLSNS--------------VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLN 240 (419)
T ss_pred hhhhhhhhhhhhHHhhcchh--------------heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeec
Confidence 11222222211 0112225556677888888888888888888777777 47888888
Q ss_pred ecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCCCcCEEEeccCCCCCChHHHHHHHhcCCCCcEE
Q 007916 151 LLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSEVNTDALERLVSRCKSLKVL 230 (585)
Q Consensus 151 l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L 230 (585)
++.|.+++..++.-++.+|+.|.+|+|+.|......... .+..--++|..|+++++-..+....+..+.+.||+|.+|
T Consensus 241 lsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv--~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 241 LSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV--AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred cccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH--HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 888888888888888888888888888888654432111 122345778888888876666777788888888888888
Q ss_pred EecCCcchhH-HHHHHHhCCccccccCc
Q 007916 231 KVNKSISLEQ-LQRLLVRAPQLEELGTG 257 (585)
Q Consensus 231 ~l~~~~~~~~-~~~~~~~~~~L~~L~l~ 257 (585)
+++.|..+.+ ....+.+++.|++|.++
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehh
Confidence 8888776554 33444444444444443
No 5
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.88 E-value=1.1e-22 Score=186.21 Aligned_cols=319 Identities=24% Similarity=0.361 Sum_probs=217.9
Q ss_pred hhCCCccEEEecCCCCcccCccCCCCCCCchHHHHHHHHhhCCCCcEEEeccc-ccChHHHHHHHhhCCCccEEEecCCC
Q 007916 77 RRFPNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRM-AVSDESLEFLASNFPNFKLLSLLSCD 155 (585)
Q Consensus 77 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~l~~~~l~~i~~~~~~L~~L~l~~~~ 155 (585)
+....++.|.++||....+.+ +..+...||++++|++.+| .+++..+..+++.|++|++|++..|.
T Consensus 135 Rcgg~lk~LSlrG~r~v~~ss-------------lrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~ 201 (483)
T KOG4341|consen 135 RCGGFLKELSLRGCRAVGDSS-------------LRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS 201 (483)
T ss_pred hhccccccccccccccCCcch-------------hhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc
Confidence 334578999999998765443 6677889999999999999 89999999999999999999999999
Q ss_pred CCCHHHHHHHHHhCCCCCEEEcccC-CCCccccccccccccCCCCcCEEEeccCCCCCChHHHHHHHhcCCCCcEEEecC
Q 007916 156 GFSTDGLAAIATHCKNLTELDIQEN-GIEDSSGSWLSCFPESFTSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNK 234 (585)
Q Consensus 156 ~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~ 234 (585)
.+++..+..+...|++|++|+++.| .+++ .++..+.+.+..++.+...|
T Consensus 202 ~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~------------------------------~gv~~~~rG~~~l~~~~~kG 251 (483)
T KOG4341|consen 202 SITDVSLKYLAEGCRKLKYLNLSWCPQISG------------------------------NGVQALQRGCKELEKLSLKG 251 (483)
T ss_pred hhHHHHHHHHHHhhhhHHHhhhccCchhhc------------------------------CcchHHhccchhhhhhhhcc
Confidence 9999999989999999999999988 3333 33444456666666665556
Q ss_pred CcchhHHHHHHHhCCccccccCcccccccCCCchhhHHHHhhcCCcccccccccccCcCCHHHHhhcCCCCcEEEecccc
Q 007916 235 SISLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTA 314 (585)
Q Consensus 235 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 314 (585)
|..... ..+...-..++-+.++++..|.
T Consensus 252 C~e~~l----------------------------------------------------e~l~~~~~~~~~i~~lnl~~c~ 279 (483)
T KOG4341|consen 252 CLELEL----------------------------------------------------EALLKAAAYCLEILKLNLQHCN 279 (483)
T ss_pred cccccH----------------------------------------------------HHHHHHhccChHhhccchhhhc
Confidence 543222 1111112223344444444554
Q ss_pred -cCChhHHHHHhcCCCCcEEEeccc--CChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHHHHHhcCccchhh
Q 007916 315 -LQSGEFAKLVVHCPRLRRLWVLDT--VEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYV 391 (585)
Q Consensus 315 -~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 391 (585)
+++.++..+...|..|+.|..+++ .++..+..+.+++++|+.|.+.+ +.+ +++.++..+.++++.|+.+
T Consensus 280 ~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~-------c~~-fsd~~ft~l~rn~~~Le~l 351 (483)
T KOG4341|consen 280 QLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSG-------CQQ-FSDRGFTMLGRNCPHLERL 351 (483)
T ss_pred cccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccc-------cch-hhhhhhhhhhcCChhhhhh
Confidence 556666666666666666666654 55566666777777777777777 345 7777777777777777777
Q ss_pred -hccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEcccCCChhHHHHHhhcCc
Q 007916 392 -LYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTDLTFEYIGKYAK 470 (585)
Q Consensus 392 -~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~ 470 (585)
...|..+++..+.+++..||.|+.+.+++|+. ++ |+|+..+... .....
T Consensus 352 ~~e~~~~~~d~tL~sls~~C~~lr~lslshce~-----it----D~gi~~l~~~---------------------~c~~~ 401 (483)
T KOG4341|consen 352 DLEECGLITDGTLASLSRNCPRLRVLSLSHCEL-----IT----DEGIRHLSSS---------------------SCSLE 401 (483)
T ss_pred cccccceehhhhHhhhccCCchhccCChhhhhh-----hh----hhhhhhhhhc---------------------ccccc
Confidence 44566666666666666777777777666442 45 4443332211 11445
Q ss_pred cccceeccccc-CChHHHHHHHhcCCCccEEEecCCCC-ChHHHHHHHhcCcCCcEEEccc
Q 007916 471 NLETLSVAFAG-RSDRGMQCVLEGCPKLRKLEIRDCPF-GNEALLSGLEKYESMRSLWMSA 529 (585)
Q Consensus 471 ~L~~L~l~~~~-i~~~~l~~l~~~~~~L~~L~l~~~~~-~~~~l~~~~~~l~~L~~L~l~~ 529 (585)
.|..+.+++|+ ++|..+.. +..|++|+.+++.+|.. +..++.....++|+++...+-+
T Consensus 402 ~l~~lEL~n~p~i~d~~Le~-l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a 461 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLEH-LSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFA 461 (483)
T ss_pred ccceeeecCCCCchHHHHHH-HhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhcc
Confidence 67777777776 44444444 47788888888888875 7777777778888877665543
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=2.8e-21 Score=184.05 Aligned_cols=340 Identities=16% Similarity=0.169 Sum_probs=165.2
Q ss_pred CCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCC
Q 007916 119 PFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFT 198 (585)
Q Consensus 119 ~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~ 198 (585)
+.-+.|+++++.+.+..+..+.. +++|+.+++..+. ...++.......+|+.|.|.+|.|+....+.+ ..++
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~n-l~nLq~v~l~~N~---Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L----~~l~ 149 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYN-LPNLQEVNLNKNE---LTRIPRFGHESGHLEKLDLRHNLISSVTSEEL----SALP 149 (873)
T ss_pred cceeeeeccccccccCcHHHHhc-CCcceeeeeccch---hhhcccccccccceeEEeeeccccccccHHHH----HhHh
Confidence 44556777777666655555554 6777777776643 33445555455667777777666655433322 3455
Q ss_pred CcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcchhHH-HHHHHhCCccccccCcccccccCCCchhhHHHHhh
Q 007916 199 SLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSISLEQL-QRLLVRAPQLEELGTGSFLQDLTARPYADLESAFN 276 (585)
Q Consensus 199 ~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 276 (585)
.|+.||++.+... ++... +..-.++++|++++|. ++++ ...+..+.+|..|.+..+...
T Consensus 150 alrslDLSrN~is~i~~~s----fp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrit-------------- 210 (873)
T KOG4194|consen 150 ALRSLDLSRNLISEIPKPS----FPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRIT-------------- 210 (873)
T ss_pred hhhhhhhhhchhhcccCCC----CCCCCCceEEeecccc-ccccccccccccchheeeecccCccc--------------
Confidence 6666666655311 11111 2223456666666654 2221 223333334444444332111
Q ss_pred cCCcccccccccccCcCCHHHHhhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcE
Q 007916 277 NCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEE 356 (585)
Q Consensus 277 ~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~ 356 (585)
.--...+..+++|+.|++..|.+.-... .-++++++|+.|.+..+....--...+-.|.++++
T Consensus 211 ----------------tLp~r~Fk~L~~L~~LdLnrN~irive~-ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~ 273 (873)
T KOG4194|consen 211 ----------------TLPQRSFKRLPKLESLDLNRNRIRIVEG-LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEH 273 (873)
T ss_pred ----------------ccCHHHhhhcchhhhhhccccceeeehh-hhhcCchhhhhhhhhhcCcccccCcceeeecccce
Confidence 0111223446666666666655322211 11355666666666543111111111234566666
Q ss_pred EEecCCCCCchhhccccChhhHHHHHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchh
Q 007916 357 LRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDE 436 (585)
Q Consensus 357 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~ 436 (585)
|+|..+. ... ++...+ .++..|++|+++.|.+.......+. .+++|++|+++++ .++.. ++
T Consensus 274 l~L~~N~-----l~~-vn~g~l----fgLt~L~~L~lS~NaI~rih~d~Ws-ftqkL~~LdLs~N------~i~~l--~~ 334 (873)
T KOG4194|consen 274 LNLETNR-----LQA-VNEGWL----FGLTSLEQLDLSYNAIQRIHIDSWS-FTQKLKELDLSSN------RITRL--DE 334 (873)
T ss_pred eecccch-----hhh-hhcccc----cccchhhhhccchhhhheeecchhh-hcccceeEecccc------ccccC--Ch
Confidence 6666643 111 221111 1456666666666666544444443 6667777777644 23311 11
Q ss_pred hHHHHHhcCCCCcEEEcccCCChhHHHHHh----hcCccccceecccccC----ChHHHHHHHhcCCCccEEEecCCCCC
Q 007916 437 AFGAVVKTCSKLQRLSVSGLLTDLTFEYIG----KYAKNLETLSVAFAGR----SDRGMQCVLEGCPKLRKLEIRDCPFG 508 (585)
Q Consensus 437 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~----~~~~~L~~L~l~~~~i----~~~~l~~l~~~~~~L~~L~l~~~~~~ 508 (585)
+ .+..+..|+.|.++. +.+..++ ..+.+|++|+|+.|.+ .| -...+.++++|++|++.||++.
T Consensus 335 ~---sf~~L~~Le~LnLs~----Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED--aa~~f~gl~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 335 G---SFRVLSQLEELNLSH----NSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED--AAVAFNGLPSLRKLRLTGNQLK 405 (873)
T ss_pred h---HHHHHHHhhhhcccc----cchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec--chhhhccchhhhheeecCceee
Confidence 1 122334566666654 1222221 2456666666666642 23 1222355666666666666652
Q ss_pred hHHHHHHHhcCcCCcEEEccccc
Q 007916 509 NEALLSGLEKYESMRSLWMSACN 531 (585)
Q Consensus 509 ~~~l~~~~~~l~~L~~L~l~~~~ 531 (585)
.. -...+++++.|++|+|.+|.
T Consensus 406 ~I-~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 406 SI-PKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred ec-chhhhccCcccceecCCCCc
Confidence 22 12445666666666666665
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.75 E-value=1.4e-19 Score=172.57 Aligned_cols=367 Identities=15% Similarity=0.157 Sum_probs=234.0
Q ss_pred CcEEEecccccChHHHHHHHhhCC-CccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCCC
Q 007916 121 LEELRLKRMAVSDESLEFLASNFP-NFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTS 199 (585)
Q Consensus 121 L~~L~l~~~~l~~~~l~~i~~~~~-~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~ 199 (585)
-+.|+.++..+.......+...+| .-+.|+++++. +....+..+ .++++|+++++.+|.++..+ .+.....+
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNk-l~~id~~~f-~nl~nLq~v~l~~N~Lt~IP-----~f~~~sgh 126 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNK-LSHIDFEFF-YNLPNLQEVNLNKNELTRIP-----RFGHESGH 126 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccc-cccCcHHHH-hcCCcceeeeeccchhhhcc-----cccccccc
Confidence 456666666655533333333333 47789999854 655444444 48999999999999876632 33345677
Q ss_pred cCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcchhHHH-HHHHhCCccccccCcccccccCCCchhhHHHHhhc
Q 007916 200 LEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSISLEQLQ-RLLVRAPQLEELGTGSFLQDLTARPYADLESAFNN 277 (585)
Q Consensus 200 L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~ 277 (585)
|++|++.++... ++.+. ++..+.|+.|+++.|. +..++ ..+....++++|++.++...
T Consensus 127 l~~L~L~~N~I~sv~se~----L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It--------------- 186 (873)
T KOG4194|consen 127 LEKLDLRHNLISSVTSEE----LSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRIT--------------- 186 (873)
T ss_pred eeEEeeeccccccccHHH----HHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeecccccc---------------
Confidence 999999987533 55554 5567889999999875 33322 22344566777777664221
Q ss_pred CCcccccccccccCcCCHHHHhhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEE
Q 007916 278 CKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEEL 357 (585)
Q Consensus 278 ~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L 357 (585)
....+. +..+.+|..|.++.|.++.- -...++++|+|+.|++..+.....-...+..+++|+.|
T Consensus 187 -----------~l~~~~----F~~lnsL~tlkLsrNrittL-p~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nl 250 (873)
T KOG4194|consen 187 -----------TLETGH----FDSLNSLLTLKLSRNRITTL-PQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNL 250 (873)
T ss_pred -----------cccccc----ccccchheeeecccCccccc-CHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhh
Confidence 111121 23456888899998887654 23346778999999887652221112224667888888
Q ss_pred EecCCCCCchhhccccChhhHHHHHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhh
Q 007916 358 RVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEA 437 (585)
Q Consensus 358 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~ 437 (585)
.+..++ ... ..|- .+.++.++++|++..|+++...-..+. .+..|+.|+++++.+ . ..
T Consensus 251 klqrN~-----I~k-L~DG----~Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI------~-----ri 308 (873)
T KOG4194|consen 251 KLQRND-----ISK-LDDG----AFYGLEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSYNAI------Q-----RI 308 (873)
T ss_pred hhhhcC-----ccc-ccCc----ceeeecccceeecccchhhhhhccccc-ccchhhhhccchhhh------h-----ee
Confidence 888765 222 3332 123588899998888888654444444 778999999997653 2 11
Q ss_pred HHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCC--ChHHHHH
Q 007916 438 FGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPF--GNEALLS 514 (585)
Q Consensus 438 l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~l~~ 514 (585)
-......|++|+.|+++. .++.-.-..+. .+..|++|.|+.|.++... ...+.++.+|++||+.+|.+ .-+....
T Consensus 309 h~d~WsftqkL~~LdLs~N~i~~l~~~sf~-~L~~Le~LnLs~Nsi~~l~-e~af~~lssL~~LdLr~N~ls~~IEDaa~ 386 (873)
T KOG4194|consen 309 HIDSWSFTQKLKELDLSSNRITRLDEGSFR-VLSQLEELNLSHNSIDHLA-EGAFVGLSSLHKLDLRSNELSWCIEDAAV 386 (873)
T ss_pred ecchhhhcccceeEeccccccccCChhHHH-HHHHhhhhcccccchHHHH-hhHHHHhhhhhhhcCcCCeEEEEEecchh
Confidence 222356789999999987 44433223333 5678999999999875432 22346789999999999986 1122335
Q ss_pred HHhcCcCCcEEEccccccCHHHHHHHHhhCCCCcEEEeccC
Q 007916 515 GLEKYESMRSLWMSACNVTMNACRRLAKQMPRLNVEVMKED 555 (585)
Q Consensus 515 ~~~~l~~L~~L~l~~~~it~~~~~~~~~~~p~l~~~~~~~~ 555 (585)
.+..+++|+.|.+.||++..-.-+.| ..++.+..-.+..+
T Consensus 387 ~f~gl~~LrkL~l~gNqlk~I~krAf-sgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 387 AFNGLPSLRKLRLTGNQLKSIPKRAF-SGLEALEHLDLGDN 426 (873)
T ss_pred hhccchhhhheeecCceeeecchhhh-ccCcccceecCCCC
Confidence 66789999999999999544333333 34566554444443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.75 E-value=3.1e-20 Score=178.39 Aligned_cols=375 Identities=16% Similarity=0.154 Sum_probs=195.0
Q ss_pred CCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCC
Q 007916 119 PFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFT 198 (585)
Q Consensus 119 ~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~ 198 (585)
|-+|-++++++..+...+..-.+.++.++.|.+.... ...++.-+..+.+|+.|.+.+|++.....+. ..+|
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~---L~~vPeEL~~lqkLEHLs~~HN~L~~vhGEL-----s~Lp 78 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK---LEQVPEELSRLQKLEHLSMAHNQLISVHGEL-----SDLP 78 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhh---hhhChHHHHHHhhhhhhhhhhhhhHhhhhhh-----ccch
Confidence 3444555555544432222222224556666665422 2334444445666666666666544432221 3455
Q ss_pred CcCEEEeccCCC---CCChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhCCccccccCcccccccCCCchhhHHHHh
Q 007916 199 SLEVLNFANLTS---EVNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAF 275 (585)
Q Consensus 199 ~L~~L~l~~~~~---~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~ 275 (585)
.|+.+.++.+.. .++++ +-.+..|+.|++++|. +.+.|..+..+.++-.|+++.+....+|...
T Consensus 79 ~LRsv~~R~N~LKnsGiP~d-----iF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~IetIPn~l------- 145 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTD-----IFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNIETIPNSL------- 145 (1255)
T ss_pred hhHHHhhhccccccCCCCch-----hcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCccccCCchH-------
Confidence 555555554421 14444 4455666666666543 4455556666666666666554332211110
Q ss_pred hcCCcccccc--cccccCcCCHHHHhhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCC
Q 007916 276 NNCKNIHTLS--GLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPL 353 (585)
Q Consensus 276 ~~~~~L~~l~--~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~ 353 (585)
+.+|++|- ...+-..+.+|.....+..|++|++++|++....+.+ +| .+.+
T Consensus 146 --finLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ----LP---------------------smts 198 (1255)
T KOG0444|consen 146 --FINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ----LP---------------------SMTS 198 (1255)
T ss_pred --HHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc----Cc---------------------cchh
Confidence 00011000 0000011223334444555555555555543322222 22 2334
Q ss_pred CcEEEecCCCCCchhhccccChhhHHHHHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCc
Q 007916 354 LEELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEP 433 (585)
Q Consensus 354 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~ 433 (585)
|+.|.+++.. -+-..+..-...+.+|..+++++|+++-. ...+ -.+++|+.|+++++. ++.+.
T Consensus 199 L~vLhms~Tq---------RTl~N~Ptsld~l~NL~dvDlS~N~Lp~v-Pecl-y~l~~LrrLNLS~N~------iteL~ 261 (1255)
T KOG0444|consen 199 LSVLHMSNTQ---------RTLDNIPTSLDDLHNLRDVDLSENNLPIV-PECL-YKLRNLRRLNLSGNK------ITELN 261 (1255)
T ss_pred hhhhhccccc---------chhhcCCCchhhhhhhhhccccccCCCcc-hHHH-hhhhhhheeccCcCc------eeeee
Confidence 4455555422 11111111111356666777777777521 2222 267788888888553 44221
Q ss_pred chhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHH
Q 007916 434 MDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEAL 512 (585)
Q Consensus 434 ~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l 512 (585)
. ......+|++|+++. .++ ....++. .+++|++|.+.+|+++-+|++.-++.+..|+.+...+|.+.- +
T Consensus 262 ~------~~~~W~~lEtLNlSrNQLt-~LP~avc-KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl--V 331 (1255)
T KOG0444|consen 262 M------TEGEWENLETLNLSRNQLT-VLPDAVC-KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL--V 331 (1255)
T ss_pred c------cHHHHhhhhhhccccchhc-cchHHHh-hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc--C
Confidence 1 122345688888876 222 2233344 678899999999999888888888888899999998888732 5
Q ss_pred HHHHhcCcCCcEEEccccc-cCHHHHHHHHhhCCCCcEEEeccCC--CCCCcc---ceeeeeecc
Q 007916 513 LSGLEKYESMRSLWMSACN-VTMNACRRLAKQMPRLNVEVMKEDG--SDDSQA---DKVYIYRTV 571 (585)
Q Consensus 513 ~~~~~~l~~L~~L~l~~~~-it~~~~~~~~~~~p~l~~~~~~~~~--~~~~~~---~~~~~~~~~ 571 (585)
++.+..|++|+.|.|+.|. ||...--++ +|.+.+--+++++ +.+..+ .+-..|||+
T Consensus 332 PEglcRC~kL~kL~L~~NrLiTLPeaIHl---L~~l~vLDlreNpnLVMPPKP~da~~~lefYNI 393 (1255)
T KOG0444|consen 332 PEGLCRCVKLQKLKLDHNRLITLPEAIHL---LPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI 393 (1255)
T ss_pred chhhhhhHHHHHhcccccceeechhhhhh---cCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence 6778899999999999998 665444333 5666665555554 233222 234557765
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=2.9e-16 Score=152.79 Aligned_cols=78 Identities=18% Similarity=0.161 Sum_probs=40.4
Q ss_pred cCccccceecccccCChHHHHHHHhcC----CCccEEEecCCCCChHHHH---HHHhcCcCCcEEEccccccCHHHHHHH
Q 007916 468 YAKNLETLSVAFAGRSDRGMQCVLEGC----PKLRKLEIRDCPFGNEALL---SGLEKYESMRSLWMSACNVTMNACRRL 540 (585)
Q Consensus 468 ~~~~L~~L~l~~~~i~~~~l~~l~~~~----~~L~~L~l~~~~~~~~~l~---~~~~~l~~L~~L~l~~~~it~~~~~~~ 540 (585)
.+++|+.|++++|.+++.++..+...+ +.|++|++++|.+++.+.. ..+..+++|+++++++|.+++++...+
T Consensus 219 ~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~ 298 (319)
T cd00116 219 SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLL 298 (319)
T ss_pred ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHH
Confidence 344555555555555555555444443 4566666666655433322 223334556666666666665555555
Q ss_pred HhhCC
Q 007916 541 AKQMP 545 (585)
Q Consensus 541 ~~~~p 545 (585)
.+.+.
T Consensus 299 ~~~~~ 303 (319)
T cd00116 299 AESLL 303 (319)
T ss_pred HHHHh
Confidence 54443
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=2.7e-15 Score=145.97 Aligned_cols=218 Identities=21% Similarity=0.213 Sum_probs=154.2
Q ss_pred HHhhcCCCCcEEEecccccCCh---hHHHHHhcCCCCcEEEeccc-CChhhHHH---HHhcC-CCCcEEEecCCCCCchh
Q 007916 297 ALYNSCANLTFLNLSYTALQSG---EFAKLVVHCPRLRRLWVLDT-VEDKGLEA---VGSNC-PLLEELRVFPADPFDEE 368 (585)
Q Consensus 297 ~~~~~~~~L~~L~l~~~~~~~~---~l~~~~~~~~~L~~L~l~~~-~~~~~l~~---~~~~~-~~L~~L~l~~~~~~~~~ 368 (585)
..+..+++|++|+++++.+... .+..+... ++|++|++.++ ..+.++.. ....+ ++|++|++.+|.
T Consensus 75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~----- 148 (319)
T cd00116 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR----- 148 (319)
T ss_pred HHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-----
Confidence 3455688999999999986532 23333334 66999999876 44344433 34455 889999999976
Q ss_pred hccccChhhH---HHHHhcCccchhhhccCCCCCHHHHHHHHHh---CCCCceEEeeccCCCCCCCCCCCcchhhHHHHH
Q 007916 369 IIHGVTEEGF---VAVSFGCRRLHYVLYFCRQMTNAAVATIVQN---CPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVV 442 (585)
Q Consensus 369 ~~~~~~~~~~---~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~---~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~ 442 (585)
++..+. ......+++|++|++..+.+++..+..+... +++|++|++++|. +++.. ...+...+
T Consensus 149 ----l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~------i~~~~-~~~l~~~~ 217 (319)
T cd00116 149 ----LEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG------LTDEG-ASALAETL 217 (319)
T ss_pred ----CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc------cChHH-HHHHHHHh
Confidence 553333 3334456789999888899988776666543 4599999998764 44100 12234455
Q ss_pred hcCCCCcEEEccc-CCChhHHHHHhhcC----ccccceecccccCChHHHHHHH---hcCCCccEEEecCCCCChHHHHH
Q 007916 443 KTCSKLQRLSVSG-LLTDLTFEYIGKYA----KNLETLSVAFAGRSDRGMQCVL---EGCPKLRKLEIRDCPFGNEALLS 514 (585)
Q Consensus 443 ~~~~~L~~L~l~~-~~~~~~~~~l~~~~----~~L~~L~l~~~~i~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~l~~ 514 (585)
..+++|++|++++ .+++.++..++..+ ++|+.|++++|.+++.+...+. ..+++|+.+++++|.+++.+...
T Consensus 218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~ 297 (319)
T cd00116 218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL 297 (319)
T ss_pred cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHH
Confidence 6778999999998 78887887777553 7999999999999877665554 44578999999999997665444
Q ss_pred HH---hcC-cCCcEEEccccc
Q 007916 515 GL---EKY-ESMRSLWMSACN 531 (585)
Q Consensus 515 ~~---~~l-~~L~~L~l~~~~ 531 (585)
.. ... +.|++|++.+++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 298 LAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHhhcCCchhhcccCCCC
Confidence 43 444 689999998875
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.64 E-value=6.5e-18 Score=162.66 Aligned_cols=337 Identities=15% Similarity=0.123 Sum_probs=146.0
Q ss_pred CCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCC
Q 007916 118 YPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESF 197 (585)
Q Consensus 118 ~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 197 (585)
+..++-|.|...++.. ..+.++. +.+|++|.+.++. + ..+-.-+..+|.||.+.+++|++...+ +..-.-.+
T Consensus 31 Mt~~~WLkLnrt~L~~-vPeEL~~-lqkLEHLs~~HN~-L--~~vhGELs~Lp~LRsv~~R~N~LKnsG---iP~diF~l 102 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQ-VPEELSR-LQKLEHLSMAHNQ-L--ISVHGELSDLPRLRSVIVRDNNLKNSG---IPTDIFRL 102 (1255)
T ss_pred hhheeEEEechhhhhh-ChHHHHH-Hhhhhhhhhhhhh-h--HhhhhhhccchhhHHHhhhccccccCC---CCchhccc
Confidence 3445555555443221 1222332 4455555555533 1 122222234555555555555443332 11111234
Q ss_pred CCcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcchhHHH-HHHHhCCccccccCcccccccCCCchhhHHHHh
Q 007916 198 TSLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSISLEQLQ-RLLVRAPQLEELGTGSFLQDLTARPYADLESAF 275 (585)
Q Consensus 198 ~~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~ 275 (585)
..|..|+++.+... ++.. +...+++-.|++++|. +..+| ..+.++..|-.|+++.+.- ..++.-.
T Consensus 103 ~dLt~lDLShNqL~EvP~~-----LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrL-------e~LPPQ~ 169 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLREVPTN-----LEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRL-------EMLPPQI 169 (1255)
T ss_pred ccceeeecchhhhhhcchh-----hhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchh-------hhcCHHH
Confidence 45555555554322 2222 3344555555555543 23332 2334455555555544322 2222222
Q ss_pred hcCCcccccccccccCcCCHHHH---hhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCC
Q 007916 276 NNCKNIHTLSGLWEAVPLYLPAL---YNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCP 352 (585)
Q Consensus 276 ~~~~~L~~l~~~~~~~~~~l~~~---~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~ 352 (585)
..+..|++|....+ ...... +..+.+|+.|++++..-+-..++..+..+.||..++++.+.. ..++.-+-.++
T Consensus 170 RRL~~LqtL~Ls~N---PL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L-p~vPecly~l~ 245 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNN---PLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL-PIVPECLYKLR 245 (1255)
T ss_pred HHHhhhhhhhcCCC---hhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC-CcchHHHhhhh
Confidence 22223333321110 111112 334566777888887644444555566677777777775421 12233334556
Q ss_pred CCcEEEecCCCCCchhhccccChhhHHHHHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCC
Q 007916 353 LLEELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNE 432 (585)
Q Consensus 353 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~ 432 (585)
+|+.|.++++. ++...+. .....+|++|.++.|+++.. ...++ .++.|+.|.+.++ .++
T Consensus 246 ~LrrLNLS~N~---------iteL~~~--~~~W~~lEtLNlSrNQLt~L-P~avc-KL~kL~kLy~n~N------kL~-- 304 (1255)
T KOG0444|consen 246 NLRRLNLSGNK---------ITELNMT--EGEWENLETLNLSRNQLTVL-PDAVC-KLTKLTKLYANNN------KLT-- 304 (1255)
T ss_pred hhheeccCcCc---------eeeeecc--HHHHhhhhhhccccchhccc-hHHHh-hhHHHHHHHhccC------ccc--
Confidence 77777777754 4332211 01144566665555555421 11222 4555655555422 333
Q ss_pred cchhhHHHHHhcCCCCcEEEcccCCChhHHHHHhhcCccccceeccccc-CChHHHHHHHhcCCCccEEEecCCC
Q 007916 433 PMDEAFGAVVKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLSVAFAG-RSDRGMQCVLEGCPKLRKLEIRDCP 506 (585)
Q Consensus 433 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~l~~l~~~~~~L~~L~l~~~~ 506 (585)
-+|++.-+..+.+|+.+...++.-.-..+.++ .|.+|++|.|+.|. || ++..+.-++.|+.||+..|+
T Consensus 305 --FeGiPSGIGKL~~Levf~aanN~LElVPEglc-RC~kL~kL~L~~NrLiT---LPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 305 --FEGIPSGIGKLIQLEVFHAANNKLELVPEGLC-RCVKLQKLKLDHNRLIT---LPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred --ccCCccchhhhhhhHHHHhhccccccCchhhh-hhHHHHHhcccccceee---chhhhhhcCCcceeeccCCc
Confidence 23333333333344444443321222222333 44555555555554 22 22222334555555555544
No 12
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.60 E-value=1.9e-14 Score=129.75 Aligned_cols=158 Identities=16% Similarity=0.211 Sum_probs=118.4
Q ss_pred CccchhhhccCCCCCHHHHHHH---HHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChh
Q 007916 385 CRRLHYVLYFCRQMTNAAVATI---VQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDL 460 (585)
Q Consensus 385 ~~~L~~L~~~~~~l~~~~l~~l---~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~ 460 (585)
-+.|+.++.+.|.+.+.+...+ .+.+|.|+.+++..+. +.... ...+..-+..|+.|+.|++.+ .++..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~------I~~eG-~~al~eal~~~~~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNG------IRPEG-VTALAEALEHCPHLEVLDLRDNTFTLE 228 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEeccc------ccCch-hHHHHHHHHhCCcceeeecccchhhhH
Confidence 4678888887787766655444 4577999999998654 44111 122344567899999999988 77777
Q ss_pred HHHHHhh---cCccccceecccccCChHHHHHHHh----cCCCccEEEecCCCCChHHHHHHH---hcCcCCcEEEcccc
Q 007916 461 TFEYIGK---YAKNLETLSVAFAGRSDRGMQCVLE----GCPKLRKLEIRDCPFGNEALLSGL---EKYESMRSLWMSAC 530 (585)
Q Consensus 461 ~~~~l~~---~~~~L~~L~l~~~~i~~~~l~~l~~----~~~~L~~L~l~~~~~~~~~l~~~~---~~l~~L~~L~l~~~ 530 (585)
+-.+++. .+++|++|++++|.+.++|..+++. +.|+|+.|.+.+|.++..+...+. ..-|.|+.|+|++|
T Consensus 229 gs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 229 GSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 7777764 4578999999999998888777654 378999999999999554443332 34599999999999
Q ss_pred cc--CHHHHHHHHhhCCCCcE
Q 007916 531 NV--TMNACRRLAKQMPRLNV 549 (585)
Q Consensus 531 ~i--t~~~~~~~~~~~p~l~~ 549 (585)
.+ .++++..++..++-..+
T Consensus 309 ~l~e~de~i~ei~~~~~~~~~ 329 (382)
T KOG1909|consen 309 RLGEKDEGIDEIASKFDTAHV 329 (382)
T ss_pred cccccchhHHHHHHhcccccc
Confidence 98 78999999998865433
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.54 E-value=9.7e-15 Score=163.57 Aligned_cols=310 Identities=18% Similarity=0.197 Sum_probs=166.4
Q ss_pred CccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCCCcCEEEeccCCCC--CChHHHHHHHh
Q 007916 145 NFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSE--VNTDALERLVS 222 (585)
Q Consensus 145 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~--~~~~~l~~l~~ 222 (585)
+|+.|.+.++. + ..++..+ ...+|++|++.++.+.... .-...+++|+.|+++++... +++ +.
T Consensus 590 ~Lr~L~~~~~~-l--~~lP~~f-~~~~L~~L~L~~s~l~~L~-----~~~~~l~~Lk~L~Ls~~~~l~~ip~------ls 654 (1153)
T PLN03210 590 KLRLLRWDKYP-L--RCMPSNF-RPENLVKLQMQGSKLEKLW-----DGVHSLTGLRNIDLRGSKNLKEIPD------LS 654 (1153)
T ss_pred ccEEEEecCCC-C--CCCCCcC-CccCCcEEECcCccccccc-----cccccCCCCCEEECCCCCCcCcCCc------cc
Confidence 46666666543 1 2222222 3467777777777654421 11245777888887765311 221 45
Q ss_pred cCCCCcEEEecCCcchhHHHHHHHhCCccccccCcccccccCCCchhhHHHHhhcCCcccccccccccCcCCHHHHhhcC
Q 007916 223 RCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSC 302 (585)
Q Consensus 223 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~l~~~~~~~~~~l~~~~~~~ 302 (585)
.+++|+.|++.+|..+..++..+..+++|+.|++.+|.. ++. ++... .+
T Consensus 655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~-------------------L~~-----------Lp~~i-~l 703 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN-------------------LEI-----------LPTGI-NL 703 (1153)
T ss_pred cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCC-------------------cCc-----------cCCcC-CC
Confidence 677888888888777777777777788888887765421 111 11111 35
Q ss_pred CCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCch--hhccccChhhHHH
Q 007916 303 ANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDE--EIIHGVTEEGFVA 380 (585)
Q Consensus 303 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~~ 380 (585)
++|+.|++++|..... ++ ....+|+.|++.++.. ..++.. ..+++|+.|.+.++..... .... +.. .
T Consensus 704 ~sL~~L~Lsgc~~L~~-~p---~~~~nL~~L~L~~n~i-~~lP~~-~~l~~L~~L~l~~~~~~~l~~~~~~-l~~----~ 772 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKS-FP---DISTNISWLDLDETAI-EEFPSN-LRLENLDELILCEMKSEKLWERVQP-LTP----L 772 (1153)
T ss_pred CCCCEEeCCCCCCccc-cc---cccCCcCeeecCCCcc-cccccc-ccccccccccccccchhhccccccc-cch----h
Confidence 6677777777642110 11 1235667776665421 112211 1345666666655220000 0000 000 0
Q ss_pred HHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEcccCCChh
Q 007916 381 VSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTDL 460 (585)
Q Consensus 381 ~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 460 (585)
....+++|+.|.+..+.........+ ..+++|+.|++++|. .+...| .+ . ++++|+.|+++++-.
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~si-~~L~~L~~L~Ls~C~-----~L~~LP--~~----~-~L~sL~~L~Ls~c~~-- 837 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPSSI-QNLHKLEHLEIENCI-----NLETLP--TG----I-NLESLESLDLSGCSR-- 837 (1153)
T ss_pred hhhccccchheeCCCCCCccccChhh-hCCCCCCEEECCCCC-----CcCeeC--CC----C-CccccCEEECCCCCc--
Confidence 11124677777655443322222233 367888888887653 233211 11 1 467788888876211
Q ss_pred HHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCC-ChHHHHHHHhcCcCCcEEEccccc
Q 007916 461 TFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPF-GNEALLSGLEKYESMRSLWMSACN 531 (585)
Q Consensus 461 ~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~-~~~~l~~~~~~l~~L~~L~l~~~~ 531 (585)
+..+.....+|+.|++++|.++. ++..+..+++|+.|++++|+. +. ++.....+++|+.+++++|.
T Consensus 838 -L~~~p~~~~nL~~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~--l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 838 -LRTFPDISTNISDLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQR--VSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred -cccccccccccCEeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCcCc--cCcccccccCCCeeecCCCc
Confidence 11122234678888888887754 444556778888888888764 32 33344567788888888886
No 14
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.6e-14 Score=127.09 Aligned_cols=203 Identities=18% Similarity=0.249 Sum_probs=151.2
Q ss_pred CCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHHHHH
Q 007916 303 ANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAVS 382 (585)
Q Consensus 303 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 382 (585)
..|+++|++...++...+..++..|.+|+.|.+++.-.++.+..-++.-.+|++|+|++| .. ++..++..+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~-------sG-~t~n~~~ll~ 256 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC-------SG-FTENALQLLL 256 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc-------cc-cchhHHHHHH
Confidence 469999999988999999999999999999999988666666666667789999999984 34 8889999888
Q ss_pred hcCccchhh-hccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc--CCCh
Q 007916 383 FGCRRLHYV-LYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG--LLTD 459 (585)
Q Consensus 383 ~~~~~L~~L-~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~--~~~~ 459 (585)
+.|.+|..| ...|...++..-..+++.-++|+.|+++|+.. .+. ...+..+++.||+|..|++++ .+++
T Consensus 257 ~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rr----nl~----~sh~~tL~~rcp~l~~LDLSD~v~l~~ 328 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRR----NLQ----KSHLSTLVRRCPNLVHLDLSDSVMLKN 328 (419)
T ss_pred HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHh----hhh----hhHHHHHHHhCCceeeeccccccccCc
Confidence 889999999 45666666664444555667888999988743 444 456777788888888888887 6677
Q ss_pred hHHHHHhhcCccccceeccccc-CChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcE
Q 007916 460 LTFEYIGKYAKNLETLSVAFAG-RSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRS 524 (585)
Q Consensus 460 ~~~~~l~~~~~~L~~L~l~~~~-i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~ 524 (585)
..+..+. .++.|++|+++.|. |..+-+.. +.+.|+|.+|++.+|-- |..+.-+.+.||+|+.
T Consensus 329 ~~~~~~~-kf~~L~~lSlsRCY~i~p~~~~~-l~s~psl~yLdv~g~vs-dt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 329 DCFQEFF-KFNYLQHLSLSRCYDIIPETLLE-LNSKPSLVYLDVFGCVS-DTTMELLKEMLSHLKI 391 (419)
T ss_pred hHHHHHH-hcchheeeehhhhcCCChHHeee-eccCcceEEEEeccccC-chHHHHHHHhCccccc
Confidence 6565555 77888888888884 54444443 36678888888877744 4445445566676653
No 15
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.52 E-value=1.9e-13 Score=123.46 Aligned_cols=185 Identities=21% Similarity=0.255 Sum_probs=100.4
Q ss_pred HHHHHhhCCCCcEEEecccccChHHHHHHHhhCC---CccEEEecCCC-CCCHHHHH-------HHHHhCCCCCEEEccc
Q 007916 111 LVAFAAKYPFLEELRLKRMAVSDESLEFLASNFP---NFKLLSLLSCD-GFSTDGLA-------AIATHCKNLTELDIQE 179 (585)
Q Consensus 111 l~~l~~~~~~L~~L~l~~~~l~~~~l~~i~~~~~---~L~~L~l~~~~-~~~~~~l~-------~~~~~~~~L~~L~L~~ 179 (585)
+......+..++.++|+++.+..+....++..+. +|+..++++.. +-....++ ..+..+|+|++|+|++
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 4444556788889999998888877777776554 45555555321 00011111 2234567788888887
Q ss_pred CCCCccccccccccccCCCCcCEEEeccCCCCCChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhCCccccccCccc
Q 007916 180 NGIEDSSGSWLSCFPESFTSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSF 259 (585)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 259 (585)
|.+...+ ...+..+++.|..|++|.+.+|..-..--..++.. |.+|.
T Consensus 102 NA~G~~g---------------------------~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~a--l~~l~---- 148 (382)
T KOG1909|consen 102 NAFGPKG---------------------------IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRA--LFELA---- 148 (382)
T ss_pred cccCccc---------------------------hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHH--HHHHH----
Confidence 7655433 34555667777777777777765322211111100 00000
Q ss_pred ccccCCCchhhHHHHhhcCCcccccccccccCcCCHHHHhhcCCCCcEEEecccccCC---hhHHHHHhcCCCCcEEEec
Q 007916 260 LQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQS---GEFAKLVVHCPRLRRLWVL 336 (585)
Q Consensus 260 ~~~~~~~~~~~l~~~~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~---~~l~~~~~~~~~L~~L~l~ 336 (585)
.......-+.|+.+....|.+.+ ..+...++.+|.|+.+.+.
T Consensus 149 -----------------------------------~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~ 193 (382)
T KOG1909|consen 149 -----------------------------------VNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLS 193 (382)
T ss_pred -----------------------------------HHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEe
Confidence 00112334667777777765333 3344455666677776665
Q ss_pred cc-CChhhH---HHHHhcCCCCcEEEecCCC
Q 007916 337 DT-VEDKGL---EAVGSNCPLLEELRVFPAD 363 (585)
Q Consensus 337 ~~-~~~~~l---~~~~~~~~~L~~L~l~~~~ 363 (585)
.+ +...++ ...+.+|++|+.|+|.+|.
T Consensus 194 qN~I~~eG~~al~eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 194 QNGIRPEGVTALAEALEHCPHLEVLDLRDNT 224 (382)
T ss_pred cccccCchhHHHHHHHHhCCcceeeecccch
Confidence 43 332222 3335667777777777753
No 16
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.52 E-value=9.3e-14 Score=143.75 Aligned_cols=285 Identities=27% Similarity=0.421 Sum_probs=192.0
Q ss_pred cCCCCcCEEEeccCCCCCChHHHHHHHhcCCCCcEEEecCCcchhH--HHHHHHhCCccccccCcccccccCCCchhhHH
Q 007916 195 ESFTSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSISLEQ--LQRLLVRAPQLEELGTGSFLQDLTARPYADLE 272 (585)
Q Consensus 195 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 272 (585)
.....++.++............+..+...++.|+.+.+.++..+.+ +......+++|++|+++.+...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---------- 227 (482)
T KOG1947|consen 158 RGLANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLL---------- 227 (482)
T ss_pred HHHHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccc----------
Confidence 4556777777777766677777888888899999999999988877 6788888999999988752000
Q ss_pred HHhhcCCcccccccccccCcCCHHHHhhcCCCCcEEEecccc-cCChhHHHHHhcCCCCcEEEeccc--CChhhHHHHHh
Q 007916 273 SAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTA-LQSGEFAKLVVHCPRLRRLWVLDT--VEDKGLEAVGS 349 (585)
Q Consensus 273 ~~~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~~~~ 349 (585)
..............+++|+.|+++++. +++..+..+...|++|++|.+.+| +++.++..+..
T Consensus 228 ---------------~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~ 292 (482)
T KOG1947|consen 228 ---------------ITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAE 292 (482)
T ss_pred ---------------cccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHH
Confidence 000111122245567889999999888 888888888888899999887766 47888888888
Q ss_pred cCCCCcEEEecCCCCCchhhccccChhhHHHHHhcCccchhhh-ccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCC
Q 007916 350 NCPLLEELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVL-YFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDY 428 (585)
Q Consensus 350 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~-~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~ 428 (585)
.|++|++|+++.| .. +++.++..+...|++++.+. ..+.. |+.++.+.+.++..
T Consensus 293 ~~~~L~~L~l~~c-------~~-~~d~~l~~~~~~c~~l~~l~~~~~~~------------c~~l~~~~l~~~~~----- 347 (482)
T KOG1947|consen 293 RCPSLRELDLSGC-------HG-LTDSGLEALLKNCPNLRELKLLSLNG------------CPSLTDLSLSGLLT----- 347 (482)
T ss_pred hcCcccEEeeecC-------cc-chHHHHHHHHHhCcchhhhhhhhcCC------------CccHHHHHHHHhhc-----
Confidence 8888999999884 44 66777777777777777762 22222 34444444433211
Q ss_pred CCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCC
Q 007916 429 LTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPF 507 (585)
Q Consensus 429 l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~ 507 (585)
... +.........|++++.+.+.. ...+.+...+...|+.| + +++......+..++.|+++.|..
T Consensus 348 ~~~---d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l----------~-~~l~~~~~~~~~l~~L~l~~~~~ 413 (482)
T KOG1947|consen 348 LTS---DDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL----------T-ESLELRLCRSDSLRVLNLSDCRL 413 (482)
T ss_pred cCc---hhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc----------c-hHHHHHhccCCccceEecccCcc
Confidence 110 133444566777777777755 33444433333344444 3 33444444455589999999987
Q ss_pred -ChHHHHHHHhcCcCCcEEEccccc-cCHHHHHHHHhh
Q 007916 508 -GNEALLSGLEKYESMRSLWMSACN-VTMNACRRLAKQ 543 (585)
Q Consensus 508 -~~~~l~~~~~~l~~L~~L~l~~~~-it~~~~~~~~~~ 543 (585)
++..+......+..++.+++.+|. ++..++..+...
T Consensus 414 ~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 451 (482)
T KOG1947|consen 414 VTDKGLRCLADSCSNLKDLDLSGCRVITLKSLEGFASN 451 (482)
T ss_pred ccccchHHHhhhhhccccCCccCcccccchhhhhhhcc
Confidence 777776555558889999999998 787777766554
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.50 E-value=3.1e-14 Score=143.93 Aligned_cols=218 Identities=17% Similarity=0.210 Sum_probs=141.2
Q ss_pred CCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCCh---------hhH-------------HHHHhcCCCCcEEEe
Q 007916 302 CANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVED---------KGL-------------EAVGSNCPLLEELRV 359 (585)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~---------~~l-------------~~~~~~~~~L~~L~l 359 (585)
..+|++++++.+.+.. ++.++..|++|+.+....+... ..+ +......+.|+.|++
T Consensus 240 p~nl~~~dis~n~l~~--lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSN--LPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred cccceeeecchhhhhc--chHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeee
Confidence 3567788888776544 4577778888888877653110 111 111233567888888
Q ss_pred cCCC--CCchhhccccChhhHHHHHh--------------cCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCC
Q 007916 360 FPAD--PFDEEIIHGVTEEGFVAVSF--------------GCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTP 423 (585)
Q Consensus 360 ~~~~--~~~~~~~~~~~~~~~~~~~~--------------~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~ 423 (585)
..+. .+++.... +....+..+.. ..+.|+.|.+.+|.++|..+..+. .+++|+.|+++++.
T Consensus 318 ~~N~L~~lp~~~l~-v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhLsyNr- 394 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLA-VLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV-NFKHLKVLHLSYNR- 394 (1081)
T ss_pred hhccccccchHHHh-hhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc-cccceeeeeecccc-
Confidence 8765 12211111 22222221111 124577788888999999998886 88999999999764
Q ss_pred CCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEe
Q 007916 424 GLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEI 502 (585)
Q Consensus 424 ~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l 502 (585)
+. ..-.....++..|+.|+++| .++ .....++ .++.|+.|...+|.+.. ++. +...+.|+.+|+
T Consensus 395 -----L~-----~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva-~~~~L~tL~ahsN~l~~--fPe-~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 395 -----LN-----SFPASKLRKLEELEELNLSGNKLT-TLPDTVA-NLGRLHTLRAHSNQLLS--FPE-LAQLPQLKVLDL 459 (1081)
T ss_pred -----cc-----cCCHHHHhchHHhHHHhcccchhh-hhhHHHH-hhhhhHHHhhcCCceee--chh-hhhcCcceEEec
Confidence 33 11223456778899999998 333 2224444 78899999998887643 443 467899999999
Q ss_pred cCCCCChHHHHHHHhcCcCCcEEEccccc---cCHHHHHHH
Q 007916 503 RDCPFGNEALLSGLEKYESMRSLWMSACN---VTMNACRRL 540 (585)
Q Consensus 503 ~~~~~~~~~l~~~~~~l~~L~~L~l~~~~---it~~~~~~~ 540 (585)
+.|.++...+++.... |+|++|+++||. ++...+..+
T Consensus 460 S~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l 499 (1081)
T KOG0618|consen 460 SCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVL 499 (1081)
T ss_pred ccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHh
Confidence 9999977666544333 899999999997 455544444
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.37 E-value=1e-12 Score=147.48 Aligned_cols=200 Identities=17% Similarity=0.183 Sum_probs=122.5
Q ss_pred HHHHhhcCCCCcEEEecccc-cCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhcccc
Q 007916 295 LPALYNSCANLTFLNLSYTA-LQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGV 373 (585)
Q Consensus 295 l~~~~~~~~~L~~L~l~~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 373 (585)
++..+..+++|+.|++++|. +.. ++... .+++|+.|.+.+|.....++. ...+|+.|++.++. +
T Consensus 673 lp~si~~L~~L~~L~L~~c~~L~~--Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~---------i 737 (1153)
T PLN03210 673 LPSSIQYLNKLEDLDMSRCENLEI--LPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETA---------I 737 (1153)
T ss_pred cchhhhccCCCCEEeCCCCCCcCc--cCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCc---------c
Confidence 44456678889999998876 322 22211 578899999988744333332 24678889888754 2
Q ss_pred ChhhHHHHHhcCccchhhhccCCCC---CHH---HHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCC
Q 007916 374 TEEGFVAVSFGCRRLHYVLYFCRQM---TNA---AVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSK 447 (585)
Q Consensus 374 ~~~~~~~~~~~~~~L~~L~~~~~~l---~~~---~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 447 (585)
... ... ..+++|+.|.+..... ... ........+++|+.|++++|.. +. .++..+.++++
T Consensus 738 ~~l--P~~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~-----l~------~lP~si~~L~~ 803 (1153)
T PLN03210 738 EEF--PSN-LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS-----LV------ELPSSIQNLHK 803 (1153)
T ss_pred ccc--ccc-ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCC-----cc------ccChhhhCCCC
Confidence 211 000 1256677664432111 000 0001122457999999987643 22 23334668899
Q ss_pred CcEEEcccCCChhHHHHHhhcCccccceecccccC-ChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEE
Q 007916 448 LQRLSVSGLLTDLTFEYIGKYAKNLETLSVAFAGR-SDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLW 526 (585)
Q Consensus 448 L~~L~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i-~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~ 526 (585)
|+.|+++++-.-..+.. ...+++|+.|++++|.. .. + ....++|+.|++++|.++. ++..+..+++|+.|+
T Consensus 804 L~~L~Ls~C~~L~~LP~-~~~L~sL~~L~Ls~c~~L~~--~---p~~~~nL~~L~Ls~n~i~~--iP~si~~l~~L~~L~ 875 (1153)
T PLN03210 804 LEHLEIENCINLETLPT-GINLESLESLDLSGCSRLRT--F---PDISTNISDLNLSRTGIEE--VPWWIEKFSNLSFLD 875 (1153)
T ss_pred CCEEECCCCCCcCeeCC-CCCccccCEEECCCCCcccc--c---cccccccCEeECCCCCCcc--ChHHHhcCCCCCEEE
Confidence 99999987211111111 11578999999999863 21 2 1235789999999999854 556678999999999
Q ss_pred ccccc
Q 007916 527 MSACN 531 (585)
Q Consensus 527 l~~~~ 531 (585)
|++|+
T Consensus 876 L~~C~ 880 (1153)
T PLN03210 876 MNGCN 880 (1153)
T ss_pred CCCCC
Confidence 99987
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.31 E-value=2.1e-13 Score=138.03 Aligned_cols=317 Identities=17% Similarity=0.174 Sum_probs=175.2
Q ss_pred HhCCCCCEEEcccCCCCccccccccccccCCCCcCEEEeccCCCCCChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHH
Q 007916 167 THCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLV 246 (585)
Q Consensus 167 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~ 246 (585)
..+++|+.|....+.+. .+....++|+.|....+.....+. ...-.+|++++++.+. ...++.++.
T Consensus 196 s~~~~l~~l~c~rn~ls--------~l~~~g~~l~~L~a~~n~l~~~~~-----~p~p~nl~~~dis~n~-l~~lp~wi~ 261 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLS--------ELEISGPSLTALYADHNPLTTLDV-----HPVPLNLQYLDISHNN-LSNLPEWIG 261 (1081)
T ss_pred hhccchhhhhhhhcccc--------eEEecCcchheeeeccCcceeecc-----ccccccceeeecchhh-hhcchHHHH
Confidence 35556666655555432 222355667777766664221110 1122468888888754 556778888
Q ss_pred hCCccccccCcccccccCCCchhhHHHHhhcCCcccccccccccCcCCHHHHhhcCCCCcEEEecccccCChhHHHHHhc
Q 007916 247 RAPQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVH 326 (585)
Q Consensus 247 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~ 326 (585)
.+.+|+.+....+ .+.+++.......+|+.+.... .....++.......+|++|++..+.+..- ...++.-
T Consensus 262 ~~~nle~l~~n~N-------~l~~lp~ri~~~~~L~~l~~~~-nel~yip~~le~~~sL~tLdL~~N~L~~l-p~~~l~v 332 (1081)
T KOG0618|consen 262 ACANLEALNANHN-------RLVALPLRISRITSLVSLSAAY-NELEYIPPFLEGLKSLRTLDLQSNNLPSL-PDNFLAV 332 (1081)
T ss_pred hcccceEecccch-------hHHhhHHHHhhhhhHHHHHhhh-hhhhhCCCcccccceeeeeeehhcccccc-chHHHhh
Confidence 8999998888664 3344444444445555554221 12234455556688999999998874331 0011111
Q ss_pred CC-CCcEEEecccCChhhHHHH-HhcCCCCcEEEecCCCCCchhhccccChhhHHHHHhcCccchhhhccCCCCCHHHHH
Q 007916 327 CP-RLRRLWVLDTVEDKGLEAV-GSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVA 404 (585)
Q Consensus 327 ~~-~L~~L~l~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~l~~~~l~ 404 (585)
.. .|+.|..+.+... .++.. -...+.|+.|.+.++. .++..+..+. ++.+|+.|+++.|.+....-.
T Consensus 333 ~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~---------Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas 401 (1081)
T KOG0618|consen 333 LNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNH---------LTDSCFPVLV-NFKHLKVLHLSYNRLNSFPAS 401 (1081)
T ss_pred hhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCc---------ccccchhhhc-cccceeeeeecccccccCCHH
Confidence 11 1222222211000 00000 0122346667777654 5554444333 477788887776766533333
Q ss_pred HHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCC
Q 007916 405 TIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRS 483 (585)
Q Consensus 405 ~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~ 483 (585)
.+ ..++.|++|.++|+. ++ .++.....|+.|++|..++ .+. .+..++ .++.|+.++++.|+++
T Consensus 402 ~~-~kle~LeeL~LSGNk------L~------~Lp~tva~~~~L~tL~ahsN~l~--~fPe~~-~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 402 KL-RKLEELEELNLSGNK------LT------TLPDTVANLGRLHTLRAHSNQLL--SFPELA-QLPQLKVLDLSCNNLS 465 (1081)
T ss_pred HH-hchHHhHHHhcccch------hh------hhhHHHHhhhhhHHHhhcCCcee--echhhh-hcCcceEEecccchhh
Confidence 33 267788888888764 23 3445566778888888766 221 122444 7889999999999886
Q ss_pred hHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccCHH
Q 007916 484 DRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMN 535 (585)
Q Consensus 484 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it~~ 535 (585)
...+..... .|+|++||++||.-..... +-+..|.++...++.-++.++.
T Consensus 466 ~~~l~~~~p-~p~LkyLdlSGN~~l~~d~-~~l~~l~~l~~~~i~~~~~~d~ 515 (1081)
T KOG0618|consen 466 EVTLPEALP-SPNLKYLDLSGNTRLVFDH-KTLKVLKSLSQMDITLNNTPDG 515 (1081)
T ss_pred hhhhhhhCC-CcccceeeccCCcccccch-hhhHHhhhhhheecccCCCCcc
Confidence 655554322 2799999999998422211 3345556666666665544443
No 20
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.27 E-value=1.3e-11 Score=127.79 Aligned_cols=193 Identities=27% Similarity=0.480 Sum_probs=118.7
Q ss_pred HHHHhhcCCCCcEEEecccc-cCChhHHHHHhcCCCCcEEEeccc--CChhhHHHHHhcCCCCcEEEecCCCCCchhhcc
Q 007916 295 LPALYNSCANLTFLNLSYTA-LQSGEFAKLVVHCPRLRRLWVLDT--VEDKGLEAVGSNCPLLEELRVFPADPFDEEIIH 371 (585)
Q Consensus 295 l~~~~~~~~~L~~L~l~~~~-~~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 371 (585)
+..+...|++|++|.+.+|. +++.++..+...|++|++|++..| +.+.++..+...|++|+.|.+....
T Consensus 261 l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~-------- 332 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN-------- 332 (482)
T ss_pred HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC--------
Confidence 33334446666666666666 666777777777777777777765 3466677777777777777666521
Q ss_pred ccChhhHHHHHhcCccchhhh-ccCCCCC-HHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCc
Q 007916 372 GVTEEGFVAVSFGCRRLHYVL-YFCRQMT-NAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQ 449 (585)
Q Consensus 372 ~~~~~~~~~~~~~~~~L~~L~-~~~~~l~-~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~ 449 (585)
+|+.++.+. ..+.... +......+..|++|+.+.+.++. .. +.+....+..|+.|.
T Consensus 333 ------------~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~------~~----~~~~~~~l~gc~~l~ 390 (482)
T KOG1947|consen 333 ------------GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG------IS----DLGLELSLRGCPNLT 390 (482)
T ss_pred ------------CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh------cc----CcchHHHhcCCcccc
Confidence 144455552 2233333 45556666688888888887643 33 345556677788773
Q ss_pred EEEcccCCChhHHHHHhhcCccccceeccccc-CChHHHHHHHhcCCCccEEEecCCCC-ChHHHHHHHhcCcCCcEEEc
Q 007916 450 RLSVSGLLTDLTFEYIGKYAKNLETLSVAFAG-RSDRGMQCVLEGCPKLRKLEIRDCPF-GNEALLSGLEKYESMRSLWM 527 (585)
Q Consensus 450 ~L~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~l~~l~~~~~~L~~L~l~~~~~-~~~~l~~~~~~l~~L~~L~l 527 (585)
..+ ......+..++.|.++.|. .++.++......|.+++.+++.+|.. +........... .....+.
T Consensus 391 -~~l---------~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 459 (482)
T KOG1947|consen 391 -ESL---------ELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLEGFASNC-DLISLDV 459 (482)
T ss_pred -hHH---------HHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhhhhhhccc-ccccccc
Confidence 222 2222234448889998885 67777777655588899999999987 555554333333 4444433
Q ss_pred c
Q 007916 528 S 528 (585)
Q Consensus 528 ~ 528 (585)
.
T Consensus 460 ~ 460 (482)
T KOG1947|consen 460 G 460 (482)
T ss_pred c
Confidence 3
No 21
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.21 E-value=1.2e-13 Score=126.75 Aligned_cols=107 Identities=18% Similarity=0.195 Sum_probs=69.0
Q ss_pred HhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEcccCCChhHHHHHhh---cCccccceecccccCCh
Q 007916 408 QNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTDLTFEYIGK---YAKNLETLSVAFAGRSD 484 (585)
Q Consensus 408 ~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~---~~~~L~~L~l~~~~i~~ 484 (585)
..+++|..|+++++. +.++| .-......|+.|+++.. .+..+-. ....|+.+-.+++++..
T Consensus 432 ~~l~kLt~L~L~NN~------Ln~LP------~e~~~lv~Lq~LnlS~N----rFr~lP~~~y~lq~lEtllas~nqi~~ 495 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNL------LNDLP------EEMGSLVRLQTLNLSFN----RFRMLPECLYELQTLETLLASNNQIGS 495 (565)
T ss_pred Hhhhcceeeecccch------hhhcc------hhhhhhhhhheeccccc----ccccchHHHhhHHHHHHHHhccccccc
Confidence 377888888888543 33222 22334556888888762 1221111 22334444445566543
Q ss_pred HHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccC
Q 007916 485 RGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVT 533 (585)
Q Consensus 485 ~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it 533 (585)
.... -+.++.+|.+||+.+|.+ ..++..+.+|.+|++|.++||++.
T Consensus 496 vd~~-~l~nm~nL~tLDL~nNdl--q~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 496 VDPS-GLKNMRNLTTLDLQNNDL--QQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cChH-HhhhhhhcceeccCCCch--hhCChhhccccceeEEEecCCccC
Confidence 2222 236789999999999988 336788999999999999999975
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.3e-11 Score=115.02 Aligned_cols=187 Identities=14% Similarity=0.046 Sum_probs=94.1
Q ss_pred HHhhcCCCCcEEEecccc-cCChhHHHHHhcCCCCcEEEecccC----ChhhHHHHHhcCCCCcEEEecCCCCCchhhcc
Q 007916 297 ALYNSCANLTFLNLSYTA-LQSGEFAKLVVHCPRLRRLWVLDTV----EDKGLEAVGSNCPLLEELRVFPADPFDEEIIH 371 (585)
Q Consensus 297 ~~~~~~~~L~~L~l~~~~-~~~~~l~~~~~~~~~L~~L~l~~~~----~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 371 (585)
.....|++++.|+++.|- -....+..++..+|+|+.|.++.+. .+.... ..+++|+.|.++.|.
T Consensus 140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~---~~l~~lK~L~l~~CG-------- 208 (505)
T KOG3207|consen 140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT---LLLSHLKQLVLNSCG-------- 208 (505)
T ss_pred hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch---hhhhhhheEEeccCC--------
Confidence 345557777777777765 3334456666777777777776531 111111 134567777777664
Q ss_pred ccChhhHHHHHhcCccchhhhccCCC-CCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcE
Q 007916 372 GVTEEGFVAVSFGCRRLHYVLYFCRQ-MTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQR 450 (585)
Q Consensus 372 ~~~~~~~~~~~~~~~~L~~L~~~~~~-l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~ 450 (585)
++..++..+...||+|+.|.+..|. +.-.... ...+..|++|+|+++.. ++ .........+|.|..
T Consensus 209 -ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~l-----i~-----~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 209 -LSWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNL-----ID-----FDQGYKVGTLPGLNQ 275 (505)
T ss_pred -CCHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCcc-----cc-----cccccccccccchhh
Confidence 6666666666667777777554442 2111110 11344566666665432 11 111122345566666
Q ss_pred EEccc-CCCh-----hHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCC
Q 007916 451 LSVSG-LLTD-----LTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPF 507 (585)
Q Consensus 451 L~l~~-~~~~-----~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~ 507 (585)
|+++. .+++ .........+++|+.|.+..|+|.+-....-+...++|+.|.+..+++
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 66644 2111 111111234566666666666654322222224456666666666665
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=8.5e-11 Score=109.61 Aligned_cols=114 Identities=19% Similarity=0.185 Sum_probs=59.0
Q ss_pred hCCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccC
Q 007916 117 KYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPES 196 (585)
Q Consensus 117 ~~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 196 (585)
.+..|+.+.|.++.+.........+.|++++.|+++.+-...-..+..++..+|+|+.|+++.|.+....... ....
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~---~~~~ 195 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN---TTLL 195 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc---chhh
Confidence 3455666666666555544444555566666666665432222334455566666666666666543321111 1123
Q ss_pred CCCcCEEEeccCCCCCChHHHHHHHhcCCCCcEEEecCC
Q 007916 197 FTSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKS 235 (585)
Q Consensus 197 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 235 (585)
+++|+.|.+++|+ ++...+..++..+|+|+.|.+..|
T Consensus 196 l~~lK~L~l~~CG--ls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 196 LSHLKQLVLNSCG--LSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hhhhheEEeccCC--CCHHHHHHHHHhCCcHHHhhhhcc
Confidence 4555555555554 445555555555555555555554
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.07 E-value=1.6e-10 Score=120.65 Aligned_cols=70 Identities=16% Similarity=0.124 Sum_probs=36.3
Q ss_pred ccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCCCcCEEEeccCCCC-CChHHHHHHHhcC
Q 007916 146 FKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSE-VNTDALERLVSRC 224 (585)
Q Consensus 146 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~l~~~~ 224 (585)
-..|+++.+. ++ .++..+ .++|+.|.+.+|.++.. +...++|++|+++++... ++ ...
T Consensus 203 ~~~LdLs~~~-Lt--sLP~~l--~~~L~~L~L~~N~Lt~L--------P~lp~~Lk~LdLs~N~LtsLP--------~lp 261 (788)
T PRK15387 203 NAVLNVGESG-LT--TLPDCL--PAHITTLVIPDNNLTSL--------PALPPELRTLEVSGNQLTSLP--------VLP 261 (788)
T ss_pred CcEEEcCCCC-CC--cCCcch--hcCCCEEEccCCcCCCC--------CCCCCCCcEEEecCCccCccc--------Ccc
Confidence 5566666642 32 222211 13677777777665542 233466777777665421 11 123
Q ss_pred CCCcEEEecCCc
Q 007916 225 KSLKVLKVNKSI 236 (585)
Q Consensus 225 ~~L~~L~l~~~~ 236 (585)
++|+.|++.+|.
T Consensus 262 ~sL~~L~Ls~N~ 273 (788)
T PRK15387 262 PGLLELSIFSNP 273 (788)
T ss_pred cccceeeccCCc
Confidence 466777776654
No 25
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.02 E-value=2.9e-12 Score=117.74 Aligned_cols=53 Identities=15% Similarity=0.106 Sum_probs=34.3
Q ss_pred ecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEcccccc
Q 007916 476 SVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNV 532 (585)
Q Consensus 476 ~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i 532 (585)
.++++.++- +...+...++|..|++++|.+.+ ++.-+..+-.|+.|+++.|++
T Consensus 418 ~lsnn~isf--v~~~l~~l~kLt~L~L~NN~Ln~--LP~e~~~lv~Lq~LnlS~NrF 470 (565)
T KOG0472|consen 418 VLSNNKISF--VPLELSQLQKLTFLDLSNNLLND--LPEEMGSLVRLQTLNLSFNRF 470 (565)
T ss_pred HhhcCcccc--chHHHHhhhcceeeecccchhhh--cchhhhhhhhhheeccccccc
Confidence 344554433 33345667888888888887744 445556666788888888764
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.98 E-value=1.1e-09 Score=114.45 Aligned_cols=93 Identities=14% Similarity=0.064 Sum_probs=61.7
Q ss_pred CCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCC
Q 007916 119 PFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFT 198 (585)
Q Consensus 119 ~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~ 198 (585)
.+-..|+++.+.++. ....+ .++|+.|.+.++. ++. ++. ..++|++|++++|.++..+ ...+
T Consensus 201 ~~~~~LdLs~~~Lts-LP~~l---~~~L~~L~L~~N~-Lt~--LP~---lp~~Lk~LdLs~N~LtsLP--------~lp~ 262 (788)
T PRK15387 201 NGNAVLNVGESGLTT-LPDCL---PAHITTLVIPDNN-LTS--LPA---LPPELRTLEVSGNQLTSLP--------VLPP 262 (788)
T ss_pred CCCcEEEcCCCCCCc-CCcch---hcCCCEEEccCCc-CCC--CCC---CCCCCcEEEecCCccCccc--------Cccc
Confidence 557789999887663 11112 2479999999854 432 332 3689999999999877532 3357
Q ss_pred CcCEEEeccCCCCCChHHHHHHHhcCCCCcEEEecCCc
Q 007916 199 SLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSI 236 (585)
Q Consensus 199 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 236 (585)
+|+.|++.++. +. .+. ....+|+.|++++|.
T Consensus 263 sL~~L~Ls~N~--L~--~Lp---~lp~~L~~L~Ls~N~ 293 (788)
T PRK15387 263 GLLELSIFSNP--LT--HLP---ALPSGLCKLWIFGNQ 293 (788)
T ss_pred ccceeeccCCc--hh--hhh---hchhhcCEEECcCCc
Confidence 89999998774 22 121 223578888888764
No 27
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.85 E-value=2e-09 Score=70.19 Aligned_cols=36 Identities=42% Similarity=0.738 Sum_probs=32.1
Q ss_pred hcCCCHHHHHHHHhccCChhHHHHHHHHhHHHHHHHh
Q 007916 20 TASFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAER 56 (585)
Q Consensus 20 i~~LP~eil~~If~~L~~~~d~~~~~~Vck~w~~~~~ 56 (585)
|..||+||+.+||+|| +.+|+.++++|||+|++++.
T Consensus 1 i~~LP~Eil~~If~~L-~~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYL-DPRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS--HHHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHC
Confidence 5789999999999999 58999999999999999985
No 28
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.82 E-value=2.8e-08 Score=87.15 Aligned_cols=238 Identities=15% Similarity=0.161 Sum_probs=139.5
Q ss_pred hhcCCCCcEEEecccccCChhHHHHHhcC---CCCcEEEecccCCh----------hhHHHHHhcCCCCcEEEecCCCCC
Q 007916 299 YNSCANLTFLNLSYTALQSGEFAKLVVHC---PRLRRLWVLDTVED----------KGLEAVGSNCPLLEELRVFPADPF 365 (585)
Q Consensus 299 ~~~~~~L~~L~l~~~~~~~~~l~~~~~~~---~~L~~L~l~~~~~~----------~~l~~~~~~~~~L~~L~l~~~~~~ 365 (585)
+.....+++++++||.+..++...+.... .+|+...+++-++. ..+...+..||+|+..+++++.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA-- 103 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA-- 103 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc--
Confidence 34478899999999998887776665444 45555555542211 1223345678888888888864
Q ss_pred chhhccccChhhHHHHHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHH----
Q 007916 366 DEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAV---- 441 (585)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~---- 441 (585)
... -....+..+.. .-.+|++|.+++|..+ .+.+-.+...+..+
T Consensus 104 ---fg~-~~~e~L~d~is-------------------------~~t~l~HL~l~NnGlG---p~aG~rigkal~~la~nK 151 (388)
T COG5238 104 ---FGS-EFPEELGDLIS-------------------------SSTDLVHLKLNNNGLG---PIAGGRIGKALFHLAYNK 151 (388)
T ss_pred ---cCc-ccchHHHHHHh-------------------------cCCCceeEEeecCCCC---ccchhHHHHHHHHHHHHh
Confidence 111 11122222222 3345555555544321 11100011111111
Q ss_pred -HhcCCCCcEEEccc-CCChhHHHH---HhhcCccccceecccccCChHHHHHHH----hcCCCccEEEecCCCCChHHH
Q 007916 442 -VKTCSKLQRLSVSG-LLTDLTFEY---IGKYAKNLETLSVAFAGRSDRGMQCVL----EGCPKLRKLEIRDCPFGNEAL 512 (585)
Q Consensus 442 -~~~~~~L~~L~l~~-~~~~~~~~~---l~~~~~~L~~L~l~~~~i~~~~l~~l~----~~~~~L~~L~l~~~~~~~~~l 512 (585)
+.+-|.|++..... .+..-+... ....-..|+.+.+..|.|..+|+..++ ..|.+|+.||+.+|-+|..+-
T Consensus 152 Kaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS 231 (388)
T COG5238 152 KAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS 231 (388)
T ss_pred hhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH
Confidence 23347788877755 333222222 222335899999999999888777653 458999999999998865543
Q ss_pred H---HHHhcCcCCcEEEccccccCHHHHHHHHhhCCC---CcEEEeccCCCCCCccceeeeeec
Q 007916 513 L---SGLEKYESMRSLWMSACNVTMNACRRLAKQMPR---LNVEVMKEDGSDDSQADKVYIYRT 570 (585)
Q Consensus 513 ~---~~~~~l~~L~~L~l~~~~it~~~~~~~~~~~p~---l~~~~~~~~~~~~~~~~~~~~~~~ 570 (585)
. ..+..++.|++|.+..|-++..|...+...+.. .++..++..+.+...-.+..++++
T Consensus 232 ~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~ 295 (388)
T COG5238 232 RYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLN 295 (388)
T ss_pred HHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechh
Confidence 3 334566889999999999888888777766543 234666666555554455554543
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.78 E-value=1.8e-09 Score=91.91 Aligned_cols=143 Identities=17% Similarity=0.155 Sum_probs=52.2
Q ss_pred hCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHH
Q 007916 409 NCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGM 487 (585)
Q Consensus 409 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l 487 (585)
.+.++++|++.++.+ + .+..+...+.+|+.|++++ .++. +..+. .+++|+.|++++|.|++.+
T Consensus 17 n~~~~~~L~L~~n~I------~------~Ie~L~~~l~~L~~L~Ls~N~I~~--l~~l~-~L~~L~~L~L~~N~I~~i~- 80 (175)
T PF14580_consen 17 NPVKLRELNLRGNQI------S------TIENLGATLDKLEVLDLSNNQITK--LEGLP-GLPRLKTLDLSNNRISSIS- 80 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S-C-
T ss_pred ccccccccccccccc------c------cccchhhhhcCCCEEECCCCCCcc--ccCcc-ChhhhhhcccCCCCCCccc-
Confidence 445677888876643 2 1222223456788888877 3332 11222 6789999999999987632
Q ss_pred HHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccCH--HHHHHHHhhCCCCcEEEeccCCCCCCcccee
Q 007916 488 QCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTM--NACRRLAKQMPRLNVEVMKEDGSDDSQADKV 565 (585)
Q Consensus 488 ~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it~--~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~ 565 (585)
..+...+|+|++|++++|.+.+..-...+..||+|+.|+|.+|+++. .=...+...+|+ +..+++..+.++-+...
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~--Lk~LD~~~V~~~ER~~A 158 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPS--LKVLDGQDVTEEERQEA 158 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT---SEETTEETTS-B----
T ss_pred cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcCh--hheeCCEEccHHHhccc
Confidence 12335689999999999998442222455788999999999999764 335566677888 45566666655555555
Q ss_pred eeee
Q 007916 566 YIYR 569 (585)
Q Consensus 566 ~~~~ 569 (585)
..+|
T Consensus 159 ~~~f 162 (175)
T PF14580_consen 159 EKLF 162 (175)
T ss_dssp ----
T ss_pred cccc
Confidence 5555
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.66 E-value=2e-07 Score=98.47 Aligned_cols=130 Identities=15% Similarity=0.079 Sum_probs=78.2
Q ss_pred ccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHH
Q 007916 386 RRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEY 464 (585)
Q Consensus 386 ~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~ 464 (585)
++|+.|.++.|.++... . ...++|+.|.+++|. ++.++ ..+ +++|+.|++++ .++. ....
T Consensus 304 ~sL~~L~Ls~N~Lt~LP--~--~l~~sL~~L~Ls~N~------Lt~LP--~~l------~~sL~~L~Ls~N~L~~-LP~~ 364 (754)
T PRK15370 304 SGITHLNVQSNSLTALP--E--TLPPGLKTLEAGENA------LTSLP--ASL------PPELQVLDVSKNQITV-LPET 364 (754)
T ss_pred hhHHHHHhcCCccccCC--c--cccccceeccccCCc------cccCC--hhh------cCcccEEECCCCCCCc-CChh
Confidence 35677766666665311 1 123678888887653 33211 111 25788888876 3331 1111
Q ss_pred HhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCCh--HHHHHHHhcCcCCcEEEccccccCHHHHHHHH
Q 007916 465 IGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGN--EALLSGLEKYESMRSLWMSACNVTMNACRRLA 541 (585)
Q Consensus 465 l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~--~~l~~~~~~l~~L~~L~l~~~~it~~~~~~~~ 541 (585)
..++|+.|++++|+++. ++.-+ .++|+.|++++|.++. ..++.....++.+..|++.+|+++...+..+.
T Consensus 365 ---lp~~L~~LdLs~N~Lt~--LP~~l--~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~~L~ 436 (754)
T PRK15370 365 ---LPPTITTLDVSRNALTN--LPENL--PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNMQ 436 (754)
T ss_pred ---hcCCcCEEECCCCcCCC--CCHhH--HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccHHHHHHHH
Confidence 24678888888887753 22211 1368888888888732 23555556668888888888888877666654
No 31
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.61 E-value=2.9e-07 Score=96.18 Aligned_cols=149 Identities=19% Similarity=0.201 Sum_probs=107.7
Q ss_pred CccchhhhccC-CCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHH
Q 007916 385 CRRLHYVLYFC-RQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTF 462 (585)
Q Consensus 385 ~~~L~~L~~~~-~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~ 462 (585)
-.+|++|++.+ ..+.......++..+|+|++|.+.+.. +. .+.+..++.++|+|..||+++ ++++-
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~------~~----~~dF~~lc~sFpNL~sLDIS~TnI~nl-- 188 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ------FD----NDDFSQLCASFPNLRSLDISGTNISNL-- 188 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCce------ec----chhHHHHhhccCccceeecCCCCccCc--
Confidence 35688885543 344566667788889999999998643 33 344778888999999999988 55543
Q ss_pred HHHhhcCccccceecccccCCh-HHHHHHHhcCCCccEEEecCCCCChHH--HHHHH---hcCcCCcEEEccccccCHHH
Q 007916 463 EYIGKYAKNLETLSVAFAGRSD-RGMQCVLEGCPKLRKLEIRDCPFGNEA--LLSGL---EKYESMRSLWMSACNVTMNA 536 (585)
Q Consensus 463 ~~l~~~~~~L~~L~l~~~~i~~-~~l~~l~~~~~~L~~L~l~~~~~~~~~--l~~~~---~~l~~L~~L~l~~~~it~~~ 536 (585)
..++ .+++|+.|.+.+-.+.. ..+..+ .++.+|+.||++..+..+.. +...+ ..+|.|+.||.+++.++.+.
T Consensus 189 ~GIS-~LknLq~L~mrnLe~e~~~~l~~L-F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 189 SGIS-RLKNLQVLSMRNLEFESYQDLIDL-FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HHHh-ccccHHHHhccCCCCCchhhHHHH-hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 3333 78899999988887644 345544 57899999999988763322 22222 35699999999999999999
Q ss_pred HHHHHhhCCCC
Q 007916 537 CRRLAKQMPRL 547 (585)
Q Consensus 537 ~~~~~~~~p~l 547 (585)
++.+..+-|++
T Consensus 267 le~ll~sH~~L 277 (699)
T KOG3665|consen 267 LEELLNSHPNL 277 (699)
T ss_pred HHHHHHhCccH
Confidence 99999888865
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.49 E-value=6.1e-08 Score=82.60 Aligned_cols=128 Identities=20% Similarity=0.180 Sum_probs=48.3
Q ss_pred CccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHH
Q 007916 385 CRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFE 463 (585)
Q Consensus 385 ~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~ 463 (585)
+.+++.|.+.++.++. +..+...+.+|+.|++++|.. +. -++ +..++.|+.|++++ .+++-. .
T Consensus 18 ~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I------~~---l~~----l~~L~~L~~L~L~~N~I~~i~-~ 81 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQI------TK---LEG----LPGLPRLKTLDLSNNRISSIS-E 81 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--------S-----TT--------TT--EEE--SS---S-C-H
T ss_pred cccccccccccccccc--ccchhhhhcCCCEEECCCCCC------cc---ccC----ccChhhhhhcccCCCCCCccc-c
Confidence 3456666666666653 234443567888888886643 31 122 23468899999987 555432 1
Q ss_pred HHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCCh-HH-HHHHHhcCcCCcEEEcc
Q 007916 464 YIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGN-EA-LLSGLEKYESMRSLWMS 528 (585)
Q Consensus 464 ~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~-~~-l~~~~~~l~~L~~L~l~ 528 (585)
.+...+|+|++|++++|+|.+.+-..-+..+|+|+.|++.+|++++ .. =..++..+|+|+.||-.
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 2333688999999999987553222334789999999999999843 22 23456889999988644
No 33
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.48 E-value=8e-07 Score=92.97 Aligned_cols=159 Identities=14% Similarity=0.168 Sum_probs=110.7
Q ss_pred CCCCcEEEecccc-cCChhHHHHHhcCCCCcEEEeccc-CChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHH
Q 007916 302 CANLTFLNLSYTA-LQSGEFAKLVVHCPRLRRLWVLDT-VEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFV 379 (585)
Q Consensus 302 ~~~L~~L~l~~~~-~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 379 (585)
-.+|++|+|+|.. +.......+...+|+|++|.+.+. +....+..+..++|+|..|||++++ +++.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn---------I~nl--- 188 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN---------ISNL--- 188 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC---------ccCc---
Confidence 4689999999977 655556677788999999999985 5566688889999999999999965 5544
Q ss_pred HHHhcCccchhhhccCCCCCH-HHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CC
Q 007916 380 AVSFGCRRLHYVLYFCRQMTN-AAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LL 457 (585)
Q Consensus 380 ~~~~~~~~L~~L~~~~~~l~~-~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~ 457 (585)
.....+.+|+.|...+-.+.. ..+..+. .+++|+.|+++.... .....+.....+....+|+|+.|+.++ .+
T Consensus 189 ~GIS~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~-----~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 189 SGISRLKNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKN-----NDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHHhccccHHHHhccCCCCCchhhHHHHh-cccCCCeeecccccc-----ccchHHHHHHHHhcccCccccEEecCCcch
Confidence 222347888888666555543 5666776 788999999985322 111001122222334568888888888 77
Q ss_pred ChhHHHHHhhcCccccceecc
Q 007916 458 TDLTFEYIGKYAKNLETLSVA 478 (585)
Q Consensus 458 ~~~~~~~l~~~~~~L~~L~l~ 478 (585)
+++.++.+-..-|+|+.+.+-
T Consensus 263 ~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 263 NEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred hHHHHHHHHHhCccHhhhhhh
Confidence 777777777666666666543
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.48 E-value=9.8e-09 Score=94.83 Aligned_cols=87 Identities=16% Similarity=0.146 Sum_probs=47.4
Q ss_pred HhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCc
Q 007916 442 VKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYE 520 (585)
Q Consensus 442 ~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~ 520 (585)
++.+++|++|++++ .++...-.++. ...++++|.|..|++... -..++++...|+.|++++|+++-. .+-.+..+.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe-~~a~l~eL~L~~N~l~~v-~~~~f~~ls~L~tL~L~~N~it~~-~~~aF~~~~ 346 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFE-GAAELQELYLTRNKLEFV-SSGMFQGLSGLKTLSLYDNQITTV-APGAFQTLF 346 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhc-chhhhhhhhcCcchHHHH-HHHhhhccccceeeeecCCeeEEE-ecccccccc
Confidence 44556666666655 33322222222 555677777777765321 112345667777777777776433 223455666
Q ss_pred CCcEEEccccc
Q 007916 521 SMRSLWMSACN 531 (585)
Q Consensus 521 ~L~~L~l~~~~ 531 (585)
+|.+|++-.|+
T Consensus 347 ~l~~l~l~~Np 357 (498)
T KOG4237|consen 347 SLSTLNLLSNP 357 (498)
T ss_pred eeeeeehccCc
Confidence 77777766655
No 35
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=4.3e-08 Score=87.23 Aligned_cols=95 Identities=9% Similarity=-0.008 Sum_probs=62.9
Q ss_pred CCHHHHhhcCCCCcEEEecccccCC-hhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhcc
Q 007916 293 LYLPALYNSCANLTFLNLSYTALQS-GEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIH 371 (585)
Q Consensus 293 ~~l~~~~~~~~~L~~L~l~~~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 371 (585)
+.+..+-..+..++++++.+|.+++ ..+..++.++|.|+.|+++.+-....+........+|+.|-+.+..
T Consensus 61 gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~-------- 132 (418)
T KOG2982|consen 61 GDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG-------- 132 (418)
T ss_pred hhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC--------
Confidence 4455555678889999999988544 6677888899999999998764444443332334578888888754
Q ss_pred ccChhhHHHHHhcCccchhhhccCC
Q 007916 372 GVTEEGFVAVSFGCRRLHYVLYFCR 396 (585)
Q Consensus 372 ~~~~~~~~~~~~~~~~L~~L~~~~~ 396 (585)
........+...+|.++.|.++-|
T Consensus 133 -L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 133 -LSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred -CChhhhhhhhhcchhhhhhhhccc
Confidence 444444555555666666644433
No 36
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.45 E-value=8.3e-06 Score=72.05 Aligned_cols=134 Identities=19% Similarity=0.207 Sum_probs=98.6
Q ss_pred hCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHH-------h-----hcCccccce
Q 007916 409 NCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYI-------G-----KYAKNLETL 475 (585)
Q Consensus 409 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l-------~-----~~~~~L~~L 475 (585)
.||+|+..+++.+.+ .... .+.+..++++-..|.+|.+++ .+...+-..+ + ..-|.|+..
T Consensus 90 kcp~l~~v~LSDNAf--g~~~-----~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~v 162 (388)
T COG5238 90 KCPRLQKVDLSDNAF--GSEF-----PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVV 162 (388)
T ss_pred cCCcceeeecccccc--Cccc-----chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEE
Confidence 899999999997654 1111 356667777888999999987 3332222222 2 245889999
Q ss_pred ecccccC---ChHHHHHHHhcCCCccEEEecCCCCChHHHHHH----HhcCcCCcEEEccccccCHHHHHHHHhhCCCCc
Q 007916 476 SVAFAGR---SDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSG----LEKYESMRSLWMSACNVTMNACRRLAKQMPRLN 548 (585)
Q Consensus 476 ~l~~~~i---~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~----~~~l~~L~~L~l~~~~it~~~~~~~~~~~p~l~ 548 (585)
....|.+ +.+-....+++-.+|+++.+.+|-+...++..+ +..+.+|+.|+|..|-+|..|-..++..+|.|+
T Consensus 163 icgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~ 242 (388)
T COG5238 163 ICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN 242 (388)
T ss_pred EeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence 9998875 333333445556799999999999865544333 357799999999999999999999999999887
Q ss_pred E
Q 007916 549 V 549 (585)
Q Consensus 549 ~ 549 (585)
.
T Consensus 243 ~ 243 (388)
T COG5238 243 L 243 (388)
T ss_pred h
Confidence 6
No 37
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.42 E-value=1.4e-07 Score=62.00 Aligned_cols=37 Identities=35% Similarity=0.548 Sum_probs=31.9
Q ss_pred hhcCCCHHHHHHHHhccCChhHHHHHHHHhHHHHHHHh
Q 007916 19 VTASFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAER 56 (585)
Q Consensus 19 ~i~~LP~eil~~If~~L~~~~d~~~~~~Vck~w~~~~~ 56 (585)
++.+||+|++.+||+||+ .+|+.++++|||+|++++.
T Consensus 2 ~~~~LP~~il~~Il~~l~-~~~~~~l~~vsk~~~~~~~ 38 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLD-PKDLLRLSLVSKRWRSLVD 38 (48)
T ss_dssp HHHHS-HHHHHHHHHTS--HHHHHHHCTT-HHHHHHHT
T ss_pred CHHHCCHHHHHHHHHHCc-HHHHHHHHHHhhHHHHHHc
Confidence 578899999999999995 9999999999999999876
No 38
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=2.3e-07 Score=82.66 Aligned_cols=208 Identities=16% Similarity=0.122 Sum_probs=120.3
Q ss_pred CCcEEEecccccChH-HHHHHHhhCCCccEEEecCCCCCC-HHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCC
Q 007916 120 FLEELRLKRMAVSDE-SLEFLASNFPNFKLLSLLSCDGFS-TDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESF 197 (585)
Q Consensus 120 ~L~~L~l~~~~l~~~-~l~~i~~~~~~L~~L~l~~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 197 (585)
.++-+.+.++.+... ....+...+..++.+++.++. ++ -..+..++.++|+|+.|+|+.|.+... +..++...
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~s~----I~~lp~p~ 120 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLSSD----IKSLPLPL 120 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCCCc----cccCcccc
Confidence 344566667754433 355666678889999999865 44 356778889999999999999987553 44555567
Q ss_pred CCcCEEEeccCCCCCChHHHHHHHhcCCCCcEEEecCCcch---hHHHHHHHhCCccccccCcccccccCCCchhhHHHH
Q 007916 198 TSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSISL---EQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESA 274 (585)
Q Consensus 198 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 274 (585)
.+|+.|.+.++. ++.......+...|.++.|+++.|... .+....-.--+.+.++....|... .+.....+
T Consensus 121 ~nl~~lVLNgT~--L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~----~w~~~~~l 194 (418)
T KOG2982|consen 121 KNLRVLVLNGTG--LSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ----LWLNKNKL 194 (418)
T ss_pred cceEEEEEcCCC--CChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHH----HHHHHHhH
Confidence 789999998876 666667777888999999988876311 010000011123333333333211 22333334
Q ss_pred hhcCCcccccccccc-cCcCCHHHHhhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEeccc
Q 007916 275 FNNCKNIHTLSGLWE-AVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDT 338 (585)
Q Consensus 275 ~~~~~~L~~l~~~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 338 (585)
.+..|++.++..+.. ..+.....-....+.+-.|+++.+++.+-+-...+..++.|..|.+.+.
T Consensus 195 ~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~ 259 (418)
T KOG2982|consen 195 SRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSEN 259 (418)
T ss_pred HhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCC
Confidence 444555554442211 1111111222334555566666666554333334566677777776654
No 39
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.40 E-value=6.4e-08 Score=89.57 Aligned_cols=92 Identities=18% Similarity=0.209 Sum_probs=55.7
Q ss_pred HHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEcccCCChhHHHHH----hhcCccccce
Q 007916 400 NAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTDLTFEYI----GKYAKNLETL 475 (585)
Q Consensus 400 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l----~~~~~~L~~L 475 (585)
........+.+|+|+.|+++++. ++ +.-...+.....++.|.+.+ +.++.+ ...+..|+.|
T Consensus 263 ~~cP~~cf~~L~~L~~lnlsnN~------i~-----~i~~~aFe~~a~l~eL~L~~----N~l~~v~~~~f~~ls~L~tL 327 (498)
T KOG4237|consen 263 SICPAKCFKKLPNLRKLNLSNNK------IT-----RIEDGAFEGAAELQELYLTR----NKLEFVSSGMFQGLSGLKTL 327 (498)
T ss_pred CcChHHHHhhcccceEeccCCCc------cc-----hhhhhhhcchhhhhhhhcCc----chHHHHHHHhhhccccceee
Confidence 33344445678888888888654 33 11122344556677777755 233332 2367788888
Q ss_pred ecccccCChHHHHHHHhcCCCccEEEecCCCC
Q 007916 476 SVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPF 507 (585)
Q Consensus 476 ~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~ 507 (585)
+|.+|+||-..-. .++...+|.+|++-.|++
T Consensus 328 ~L~~N~it~~~~~-aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 328 SLYDNQITTVAPG-AFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred eecCCeeEEEecc-cccccceeeeeehccCcc
Confidence 8888887653222 235567888888887776
No 40
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.35 E-value=1.7e-06 Score=91.55 Aligned_cols=106 Identities=15% Similarity=0.169 Sum_probs=64.2
Q ss_pred ccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHH
Q 007916 386 RRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEY 464 (585)
Q Consensus 386 ~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~ 464 (585)
++|+.|.+..+.++.. .. ..+++|+.|++++|. ++..+ ..+ .+.|+.|++++ .++. ....
T Consensus 325 ~sL~~L~Ls~N~Lt~L--P~--~l~~sL~~L~Ls~N~------L~~LP--~~l------p~~L~~LdLs~N~Lt~-LP~~ 385 (754)
T PRK15370 325 PGLKTLEAGENALTSL--PA--SLPPELQVLDVSKNQ------ITVLP--ETL------PPTITTLDVSRNALTN-LPEN 385 (754)
T ss_pred ccceeccccCCccccC--Ch--hhcCcccEEECCCCC------CCcCC--hhh------cCCcCEEECCCCcCCC-CCHh
Confidence 4566665555555431 11 124688888888654 33211 111 25788888877 3331 1111
Q ss_pred HhhcCccccceecccccCCh--HHHHHHHhcCCCccEEEecCCCCChHHHH
Q 007916 465 IGKYAKNLETLSVAFAGRSD--RGMQCVLEGCPKLRKLEIRDCPFGNEALL 513 (585)
Q Consensus 465 l~~~~~~L~~L~l~~~~i~~--~~l~~l~~~~~~L~~L~l~~~~~~~~~l~ 513 (585)
+ ...|+.|++++|+++. .++..+...++++..|++.+|+++...+.
T Consensus 386 l---~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~ 433 (754)
T PRK15370 386 L---PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQ 433 (754)
T ss_pred H---HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccHHHHH
Confidence 2 2368889999998753 34555666679999999999999765553
No 41
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.28 E-value=1.3e-06 Score=55.09 Aligned_cols=33 Identities=33% Similarity=0.530 Sum_probs=31.0
Q ss_pred CCHHHHHHHHhccCChhHHHHHHHHhHHHHHHHh
Q 007916 23 FPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAER 56 (585)
Q Consensus 23 LP~eil~~If~~L~~~~d~~~~~~Vck~w~~~~~ 56 (585)
||+|++.+||.||+ .+|+.+++.|||+|+.++.
T Consensus 1 lP~~ll~~I~~~l~-~~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKLP-PKDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhc
Confidence 79999999999995 8999999999999999875
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.23 E-value=2.4e-07 Score=82.59 Aligned_cols=129 Identities=15% Similarity=0.109 Sum_probs=84.2
Q ss_pred CccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEcccCCChhHHHH
Q 007916 385 CRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTDLTFEY 464 (585)
Q Consensus 385 ~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 464 (585)
+..|+.++++.|.++.. ..-.+-.|.++.|+++++.. . .+.. ++.+++|+.|+++++.- ..+.-
T Consensus 283 Wq~LtelDLS~N~I~~i--DESvKL~Pkir~L~lS~N~i------~------~v~n-La~L~~L~~LDLS~N~L-s~~~G 346 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQI--DESVKLAPKLRRLILSQNRI------R------TVQN-LAELPQLQLLDLSGNLL-AECVG 346 (490)
T ss_pred Hhhhhhccccccchhhh--hhhhhhccceeEEeccccce------e------eehh-hhhcccceEeecccchh-Hhhhh
Confidence 56778888877777532 22233678888888886543 2 1222 44668888888887211 11112
Q ss_pred HhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEcccccc
Q 007916 465 IGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNV 532 (585)
Q Consensus 465 l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i 532 (585)
....+-+++.|.++.|.+.+ +.. +..+-+|..||+++|++....-...+.++|.|+.+.|.+|++
T Consensus 347 wh~KLGNIKtL~La~N~iE~--LSG-L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 347 WHLKLGNIKTLKLAQNKIET--LSG-LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hHhhhcCEeeeehhhhhHhh--hhh-hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 22356788888888888744 222 244568888899998884443446678888899998888884
No 43
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=5e-06 Score=70.29 Aligned_cols=102 Identities=20% Similarity=0.296 Sum_probs=84.5
Q ss_pred CcEEEccc-CCChhHHHHHhhcCccccceeccccc-CChHHHHHHHhcCCCccEEEecCCCC-ChHHHHHHHhcCcCCcE
Q 007916 448 LQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAG-RSDRGMQCVLEGCPKLRKLEIRDCPF-GNEALLSGLEKYESMRS 524 (585)
Q Consensus 448 L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~l~~l~~~~~~L~~L~l~~~~~-~~~~l~~~~~~l~~L~~ 524 (585)
++.++-++ .|..++++.+. .++.++.|.+.+|. +.|.++..+..-.|+|+.|++++|+- |+.++ ..+.++++|+.
T Consensus 103 IeaVDAsds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-ACLLKLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-HHHHHhhhhHH
Confidence 56666677 77778888877 88999999999995 89999999888789999999999985 88888 77889999999
Q ss_pred EEccccc-cC--HHHHHHHHhhCCCCcEEE
Q 007916 525 LWMSACN-VT--MNACRRLAKQMPRLNVEV 551 (585)
Q Consensus 525 L~l~~~~-it--~~~~~~~~~~~p~l~~~~ 551 (585)
|.|.+=+ +. ......+...+|+++|.-
T Consensus 181 L~l~~l~~v~~~e~~~~~Le~aLP~c~I~~ 210 (221)
T KOG3864|consen 181 LHLYDLPYVANLELVQRQLEEALPKCDIVG 210 (221)
T ss_pred HHhcCchhhhchHHHHHHHHHhCcccceec
Confidence 9998876 32 355667788899998854
No 44
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.01 E-value=4.2e-08 Score=79.92 Aligned_cols=81 Identities=20% Similarity=0.195 Sum_probs=45.6
Q ss_pred CCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCC
Q 007916 118 YPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESF 197 (585)
Q Consensus 118 ~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 197 (585)
..+++.|.++.++++.. ...|+. +.+|+.|++.++. ...++..++.+++|+.|++..|.+...+ .-...+
T Consensus 32 ~s~ITrLtLSHNKl~~v-ppnia~-l~nlevln~~nnq---ie~lp~~issl~klr~lnvgmnrl~~lp-----rgfgs~ 101 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVV-PPNIAE-LKNLEVLNLSNNQ---IEELPTSISSLPKLRILNVGMNRLNILP-----RGFGSF 101 (264)
T ss_pred hhhhhhhhcccCceeec-CCcHHH-hhhhhhhhcccch---hhhcChhhhhchhhhheecchhhhhcCc-----cccCCC
Confidence 35666777777755441 223333 5667777776643 3444555557777777777766543322 111456
Q ss_pred CCcCEEEeccC
Q 007916 198 TSLEVLNFANL 208 (585)
Q Consensus 198 ~~L~~L~l~~~ 208 (585)
|.|+.|++.++
T Consensus 102 p~levldltyn 112 (264)
T KOG0617|consen 102 PALEVLDLTYN 112 (264)
T ss_pred chhhhhhcccc
Confidence 66666666554
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.00 E-value=3.9e-06 Score=75.12 Aligned_cols=70 Identities=19% Similarity=0.231 Sum_probs=36.2
Q ss_pred HHHHhhCCCCcEEEecccc-------cChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCc
Q 007916 112 VAFAAKYPFLEELRLKRMA-------VSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIED 184 (585)
Q Consensus 112 ~~l~~~~~~L~~L~l~~~~-------l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 184 (585)
..+..-|..|+.|..+... +....+..-...|.+|+.+.++.|. ...+..+...-|.|+.+...+..+.+
T Consensus 175 ~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~---~~~i~~~~~~kptl~t~~v~~s~~~~ 251 (490)
T KOG1259|consen 175 SHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS---TENIVDIELLKPTLQTICVHNTTIQD 251 (490)
T ss_pred HHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc---hhheeceeecCchhheeeeecccccc
Confidence 3444456667777776541 2222222212235667777777665 44444443345667776666554443
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.90 E-value=6.1e-06 Score=88.88 Aligned_cols=106 Identities=17% Similarity=0.200 Sum_probs=51.7
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccC-CCCccccccccccccCCCCcCEEEeccCCCC-CChHHHHHH
Q 007916 143 FPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQEN-GIEDSSGSWLSCFPESFTSLEVLNFANLTSE-VNTDALERL 220 (585)
Q Consensus 143 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~l 220 (585)
+++|++|-+..+...-......++..+|.|++|+|++| .+.. +......+-+|++|+++.+... +|..
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~-----LP~~I~~Li~LryL~L~~t~I~~LP~~----- 613 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK-----LPSSIGELVHLRYLDLSDTGISHLPSG----- 613 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc-----CChHHhhhhhhhcccccCCCccccchH-----
Confidence 44566666665432001111223445666666666665 2222 1111134555666666555422 2222
Q ss_pred HhcCCCCcEEEecCCcchhHHHHHHHhCCccccccCcc
Q 007916 221 VSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGS 258 (585)
Q Consensus 221 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 258 (585)
+.+++.|.+|++..+.....++.....+.+|++|.+..
T Consensus 614 l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 614 LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred HHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 55555666666665554444445555566666665543
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.84 E-value=3.5e-06 Score=84.46 Aligned_cols=106 Identities=17% Similarity=0.222 Sum_probs=68.0
Q ss_pred hCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHH
Q 007916 409 NCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGM 487 (585)
Q Consensus 409 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l 487 (585)
.+|.|+.|+|++|. ++ .+. .+..|+.|++|+|+. ++.. +..++....+|..|.+++|.++. +
T Consensus 185 ll~ale~LnLshNk------~~------~v~-~Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc~L~~L~lrnN~l~t--L 247 (1096)
T KOG1859|consen 185 LLPALESLNLSHNK------FT------KVD-NLRRLPKLKHLDLSYNCLRH--VPQLSMVGCKLQLLNLRNNALTT--L 247 (1096)
T ss_pred HHHHhhhhccchhh------hh------hhH-HHHhcccccccccccchhcc--ccccchhhhhheeeeecccHHHh--h
Confidence 55778888887553 33 122 345678888888865 2211 11122222348888888888754 3
Q ss_pred HHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEcccccc
Q 007916 488 QCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNV 532 (585)
Q Consensus 488 ~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i 532 (585)
.. +.++.+|+.||+++|-+.+..-..-+..+..|+.|+|.||++
T Consensus 248 ~g-ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 248 RG-IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hh-HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 32 356788999999988875544445556678889999999984
No 48
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.71 E-value=3.3e-06 Score=58.75 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=45.0
Q ss_pred ccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEcccccc
Q 007916 470 KNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNV 532 (585)
Q Consensus 470 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i 532 (585)
|+|+.|++++|+++...- ..+.++++|++|++++|.++.. -+..+..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~-~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPP-DSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECT-TTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCH-HHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCcC
Confidence 578888888887654211 2356789999999999988432 124568889999999999874
No 49
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.69 E-value=4.6e-05 Score=76.50 Aligned_cols=229 Identities=20% Similarity=0.177 Sum_probs=132.2
Q ss_pred cCCCCcEEEecccccCChhHHHHHh---cCCC-CcEEEeccc-CChhhHHHHHh---cC-CCCcEEEecCCCCCchhhcc
Q 007916 301 SCANLTFLNLSYTALQSGEFAKLVV---HCPR-LRRLWVLDT-VEDKGLEAVGS---NC-PLLEELRVFPADPFDEEIIH 371 (585)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~l~~~~~---~~~~-L~~L~l~~~-~~~~~l~~~~~---~~-~~L~~L~l~~~~~~~~~~~~ 371 (585)
...++++|++.+|.++......+.. ..+. +..|++..+ ..+.++..... .+ ..++++++..|.
T Consensus 202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-------- 273 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNS-------- 273 (478)
T ss_pred ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCC--------
Confidence 3567888888888766655544433 3333 455666644 44444544433 33 456888888865
Q ss_pred ccChhhHH---HHHhcCccchhhhccCCCCCHHHHHHHHHhC---CCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcC
Q 007916 372 GVTEEGFV---AVSFGCRRLHYVLYFCRQMTNAAVATIVQNC---PNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTC 445 (585)
Q Consensus 372 ~~~~~~~~---~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~---~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~ 445 (585)
+++.+.. .....++.++.+.++++.+++.....+.+.. ..+.++.+.++. ..+. .....+......-
T Consensus 274 -i~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~-----~~~~-~~~~~~~~~~~~~ 346 (478)
T KOG4308|consen 274 -ITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTG-----KGTR-GGTSVLAEADAQR 346 (478)
T ss_pred -ccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccC-----ccch-hHHHHHHHHHHHh
Confidence 5555544 3334567888888899999888777766533 455555555332 1220 0011111111111
Q ss_pred CCCcEEEccc-CCChhHHHHHhh----cCccccceecccccCChHHHHHH---HhcCCCccEEEecCCCCChHHHHHHH-
Q 007916 446 SKLQRLSVSG-LLTDLTFEYIGK----YAKNLETLSVAFAGRSDRGMQCV---LEGCPKLRKLEIRDCPFGNEALLSGL- 516 (585)
Q Consensus 446 ~~L~~L~l~~-~~~~~~~~~l~~----~~~~L~~L~l~~~~i~~~~l~~l---~~~~~~L~~L~l~~~~~~~~~l~~~~- 516 (585)
..+....+++ ...++....+.. .-+.+..+++..+.+.+.+...+ ....+.++.++++.|...++....+.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~ 426 (478)
T KOG4308|consen 347 QLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTE 426 (478)
T ss_pred hhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHH
Confidence 2222333333 444554444331 23346666666666555444333 45578999999999987555444444
Q ss_pred ---hcCcCCcEEEccccccCHHHHHHHHhhCC
Q 007916 517 ---EKYESMRSLWMSACNVTMNACRRLAKQMP 545 (585)
Q Consensus 517 ---~~l~~L~~L~l~~~~it~~~~~~~~~~~p 545 (585)
.+. .++.+.++.++++..+.........
T Consensus 427 ~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ 457 (478)
T KOG4308|consen 427 QLSRNG-SLKALRLSRNPITALGTEELQRALA 457 (478)
T ss_pred hhhhcc-cchhhhhccChhhhcchHHHHHHHh
Confidence 345 8999999999988877777666543
No 50
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.68 E-value=3.1e-05 Score=83.56 Aligned_cols=154 Identities=19% Similarity=0.165 Sum_probs=91.8
Q ss_pred CCCCCEEEcccCCCCccccccccccccCCCCcCEEEeccCCCCCChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhC
Q 007916 169 CKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRA 248 (585)
Q Consensus 169 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 248 (585)
....+.+.+.++.+.... -...+++|++|-+..+... -...-..++..+|.|+.|++++|.....+|..++.+
T Consensus 522 ~~~~rr~s~~~~~~~~~~------~~~~~~~L~tLll~~n~~~-l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L 594 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIA------GSSENPKLRTLLLQRNSDW-LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL 594 (889)
T ss_pred hhheeEEEEeccchhhcc------CCCCCCccceEEEeecchh-hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh
Confidence 345677777666543221 1135668888888765310 111112237788999999999999999999999999
Q ss_pred CccccccCcccccccCCCchhhHHHHhhcCCcccccccccccCcCCHHHHhhcCCCCcEEEecccccCChhHHHHHhcCC
Q 007916 249 PQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCP 328 (585)
Q Consensus 249 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~ 328 (585)
-+|+.|++.... + ..+|.-+..+..|.+|++..+..-.. ++.+...++
T Consensus 595 i~LryL~L~~t~-------I------------------------~~LP~~l~~Lk~L~~Lnl~~~~~l~~-~~~i~~~L~ 642 (889)
T KOG4658|consen 595 VHLRYLDLSDTG-------I------------------------SHLPSGLGNLKKLIYLNLEVTGRLES-IPGILLELQ 642 (889)
T ss_pred hhhhcccccCCC-------c------------------------cccchHHHHHHhhheecccccccccc-ccchhhhcc
Confidence 999999987631 1 23444555566777777776541111 134445567
Q ss_pred CCcEEEecccC--ChhhHHHHHhcCCCCcEEEecC
Q 007916 329 RLRRLWVLDTV--EDKGLEAVGSNCPLLEELRVFP 361 (585)
Q Consensus 329 ~L~~L~l~~~~--~~~~l~~~~~~~~~L~~L~l~~ 361 (585)
+|++|.+.... .+.....-+..+.+|+.+.+..
T Consensus 643 ~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 643 SLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 77777776432 1111111124455555555543
No 51
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.64 E-value=2.4e-06 Score=69.93 Aligned_cols=132 Identities=20% Similarity=0.209 Sum_probs=92.4
Q ss_pred hCCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccC
Q 007916 117 KYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPES 196 (585)
Q Consensus 117 ~~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 196 (585)
...+|+.|++.++++++ ....++. +++|+.|++.-+. ...++.-++.+|-|+.|++.+|++.... +..-.-.
T Consensus 54 ~l~nlevln~~nnqie~-lp~~iss-l~klr~lnvgmnr---l~~lprgfgs~p~levldltynnl~e~~---lpgnff~ 125 (264)
T KOG0617|consen 54 ELKNLEVLNLSNNQIEE-LPTSISS-LPKLRILNVGMNR---LNILPRGFGSFPALEVLDLTYNNLNENS---LPGNFFY 125 (264)
T ss_pred Hhhhhhhhhcccchhhh-cChhhhh-chhhhheecchhh---hhcCccccCCCchhhhhhcccccccccc---CCcchhH
Confidence 34688999999988766 2233444 7889999887543 2233444568899999999999876542 1111123
Q ss_pred CCCcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhCCccccccCcccccc
Q 007916 197 FTSLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQD 262 (585)
Q Consensus 197 ~~~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 262 (585)
+..|+.|.+..++.. ++.+ +..+++|+.|.+..++ +-.++..++.+.+|++|.+.++.-.
T Consensus 126 m~tlralyl~dndfe~lp~d-----vg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 126 MTTLRALYLGDNDFEILPPD-----VGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred HHHHHHHHhcCCCcccCChh-----hhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccceee
Confidence 456666777776654 4444 7788999999998865 5567899999999999999886443
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.48 E-value=0.0001 Score=46.73 Aligned_cols=35 Identities=29% Similarity=0.460 Sum_probs=16.2
Q ss_pred cccceecccccCChHHHHHHHhcCCCccEEEecCCCC
Q 007916 471 NLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPF 507 (585)
Q Consensus 471 ~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~ 507 (585)
+|+.|++++|+|++ +...+..+++|+.|++++|++
T Consensus 2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCC
Confidence 45555555555544 333334555555555555554
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.47 E-value=0.00012 Score=46.37 Aligned_cols=38 Identities=16% Similarity=0.289 Sum_probs=31.2
Q ss_pred CCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccCH
Q 007916 495 PKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTM 534 (585)
Q Consensus 495 ~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it~ 534 (585)
++|++|++++|.+++ ++..+.+|++|+.|++++|+|++
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCC
Confidence 589999999999976 44557999999999999999873
No 54
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.44 E-value=8.1e-05 Score=74.74 Aligned_cols=211 Identities=18% Similarity=0.246 Sum_probs=93.4
Q ss_pred CcEEEecccccCChhHHHH---HhcCCCCcEEEeccc-CChhhHHHHHhcCC----CCcEEEecCCCCCchhhccccChh
Q 007916 305 LTFLNLSYTALQSGEFAKL---VVHCPRLRRLWVLDT-VEDKGLEAVGSNCP----LLEELRVFPADPFDEEIIHGVTEE 376 (585)
Q Consensus 305 L~~L~l~~~~~~~~~l~~~---~~~~~~L~~L~l~~~-~~~~~l~~~~~~~~----~L~~L~l~~~~~~~~~~~~~~~~~ 376 (585)
+..+.+.+|.+.+.....+ +...+.|+.|+++.+ +.+.+...+....+ .++.|.+..|. ++..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~---------l~~~ 159 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCS---------LTSE 159 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccc---------cccc
Confidence 6677777777555444443 334456666666643 44555554443333 23445555443 4444
Q ss_pred hHHHHHhc---CccchhhhccCCCCCHHHHHHHHHhC-------CCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCC
Q 007916 377 GFVAVSFG---CRRLHYVLYFCRQMTNAAVATIVQNC-------PNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCS 446 (585)
Q Consensus 377 ~~~~~~~~---~~~L~~L~~~~~~l~~~~l~~l~~~~-------~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~ 446 (585)
+...+... ...++.+++..|.+...+...+.+.. .++++|++.+|.. +... -..+.......+
T Consensus 160 g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~------t~~~-c~~l~~~l~~~~ 232 (478)
T KOG4308|consen 160 GAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGV------TSSS-CALLDEVLASGE 232 (478)
T ss_pred chHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCc------ChHH-HHHHHHHHhccc
Confidence 44333322 34455555555555444433333222 2355555554432 1000 011122222222
Q ss_pred C-CcEEEccc-CCChhHHHHHhhcC----ccccceecccccCChHHHHHH---HhcCCCccEEEecCCCCChHHHHHHHh
Q 007916 447 K-LQRLSVSG-LLTDLTFEYIGKYA----KNLETLSVAFAGRSDRGMQCV---LEGCPKLRKLEIRDCPFGNEALLSGLE 517 (585)
Q Consensus 447 ~-L~~L~l~~-~~~~~~~~~l~~~~----~~L~~L~l~~~~i~~~~l~~l---~~~~~~L~~L~l~~~~~~~~~l~~~~~ 517 (585)
. +..|++.. .+.|.++..+...+ +.+++++++.|.+++.+...+ +..|+.++.+.+++|++++.+....++
T Consensus 233 ~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~ 312 (478)
T KOG4308|consen 233 SLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLE 312 (478)
T ss_pred hhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHH
Confidence 2 33444443 44444444443222 234555555555544433332 223455555555555555544444333
Q ss_pred cC---cCCcEEEccccc
Q 007916 518 KY---ESMRSLWMSACN 531 (585)
Q Consensus 518 ~l---~~L~~L~l~~~~ 531 (585)
.+ ..+..+.+.++.
T Consensus 313 ~l~~~~~~~~~~l~~~~ 329 (478)
T KOG4308|consen 313 ALERKTPLLHLVLGGTG 329 (478)
T ss_pred HhhhcccchhhhccccC
Confidence 22 334444444333
No 55
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.00019 Score=60.95 Aligned_cols=77 Identities=17% Similarity=0.258 Sum_probs=65.2
Q ss_pred cccceecccccCChHHHHHHHhcCCCccEEEecCCCC-ChHHHHHHHhcCcCCcEEEccccc-cCHHHHHHHHhhCCCCc
Q 007916 471 NLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPF-GNEALLSGLEKYESMRSLWMSACN-VTMNACRRLAKQMPRLN 548 (585)
Q Consensus 471 ~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~-~~~~l~~~~~~l~~L~~L~l~~~~-it~~~~~~~~~~~p~l~ 548 (585)
.++.++-+++.|..+|+..+ ..+++++.|.+.+|.- .|..+..+..-.++|+.|+|++|+ ||+.|+..+.+ +++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHL-RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHH-hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhH
Confidence 57788888999999999987 8999999999999986 777776665666999999999998 99999999865 56654
Q ss_pred E
Q 007916 549 V 549 (585)
Q Consensus 549 ~ 549 (585)
.
T Consensus 180 ~ 180 (221)
T KOG3864|consen 180 R 180 (221)
T ss_pred H
Confidence 3
No 56
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.15 E-value=0.00035 Score=48.44 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=8.3
Q ss_pred HhcCCCCcEEEecCC
Q 007916 221 VSRCKSLKVLKVNKS 235 (585)
Q Consensus 221 ~~~~~~L~~L~l~~~ 235 (585)
+..+++|++|++++|
T Consensus 45 f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 45 FSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTTSTTESEEEETSS
T ss_pred HcCCCCCCEEeCcCC
Confidence 445555555555554
No 57
>PLN03150 hypothetical protein; Provisional
Probab=96.95 E-value=0.001 Score=70.24 Aligned_cols=83 Identities=14% Similarity=0.218 Sum_probs=39.6
Q ss_pred CcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEE
Q 007916 448 LQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLW 526 (585)
Q Consensus 448 L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~ 526 (585)
++.|++++ .+.......++ .+++|+.|+|++|.++.. +...+..+++|+.|++++|.++.. ++..+.++++|+.|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~-~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILN 496 (623)
T ss_pred EEEEECCCCCccccCCHHHh-CCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEE
Confidence 44455544 33323333333 455555555555554321 222334555555555555555322 334445555555555
Q ss_pred ccccccC
Q 007916 527 MSACNVT 533 (585)
Q Consensus 527 l~~~~it 533 (585)
|++|+++
T Consensus 497 Ls~N~l~ 503 (623)
T PLN03150 497 LNGNSLS 503 (623)
T ss_pred CcCCccc
Confidence 5555543
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.92 E-value=8.4e-05 Score=74.99 Aligned_cols=84 Identities=20% Similarity=0.340 Sum_probs=60.2
Q ss_pred HhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHH-hcCCCccEEEecCCCCChHHHHHHHhcC
Q 007916 442 VKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVL-EGCPKLRKLEIRDCPFGNEALLSGLEKY 519 (585)
Q Consensus 442 ~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~-~~~~~L~~L~l~~~~~~~~~l~~~~~~l 519 (585)
++-++.|+.|+++. .+++.. ++ ..|++|++|+|++|.++- +..+. .+|. |+.|.+.||.++. + ..++++
T Consensus 183 Lqll~ale~LnLshNk~~~v~--~L-r~l~~LkhLDlsyN~L~~--vp~l~~~gc~-L~~L~lrnN~l~t--L-~gie~L 253 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD--NL-RRLPKLKHLDLSYNCLRH--VPQLSMVGCK-LQLLNLRNNALTT--L-RGIENL 253 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH--HH-Hhcccccccccccchhcc--ccccchhhhh-heeeeecccHHHh--h-hhHHhh
Confidence 44457799999987 444332 22 379999999999998644 33332 3454 9999999999832 2 445788
Q ss_pred cCCcEEEccccccCH
Q 007916 520 ESMRSLWMSACNVTM 534 (585)
Q Consensus 520 ~~L~~L~l~~~~it~ 534 (585)
.+|+.||+++|-|.+
T Consensus 254 ksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSE 268 (1096)
T ss_pred hhhhccchhHhhhhc
Confidence 999999999997544
No 59
>PLN03150 hypothetical protein; Provisional
Probab=96.80 E-value=0.0017 Score=68.69 Aligned_cols=63 Identities=19% Similarity=0.270 Sum_probs=28.7
Q ss_pred hcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCC
Q 007916 443 KTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPF 507 (585)
Q Consensus 443 ~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~ 507 (585)
..+++|+.|++++ .+.......++ .+++|+.|+|++|+++.. +...+..+++|+.|++++|.+
T Consensus 439 ~~L~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNSL 502 (623)
T ss_pred hCCCCCCEEECCCCcccCcCChHHh-CCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECcCCcc
Confidence 3445555555544 33322222333 445555555555554322 222234455555555555554
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.00038 Score=62.13 Aligned_cols=113 Identities=17% Similarity=0.118 Sum_probs=74.7
Q ss_pred CCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHH
Q 007916 410 CPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQ 488 (585)
Q Consensus 410 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~ 488 (585)
+.+.+.|+..||. ++ -..++..+|.|+.|.|+- .|+ ++..+. .|++|++|+|..|.|.+..-.
T Consensus 18 l~~vkKLNcwg~~------L~-------DIsic~kMp~lEVLsLSvNkIs--sL~pl~-rCtrLkElYLRkN~I~sldEL 81 (388)
T KOG2123|consen 18 LENVKKLNCWGCG------LD-------DISICEKMPLLEVLSLSVNKIS--SLAPLQ-RCTRLKELYLRKNCIESLDEL 81 (388)
T ss_pred HHHhhhhcccCCC------cc-------HHHHHHhcccceeEEeeccccc--cchhHH-HHHHHHHHHHHhcccccHHHH
Confidence 3467788888774 33 123567789999998875 222 233333 789999999999888765555
Q ss_pred HHHhcCCCccEEEecCCCC-ChHH---HHHHHhcCcCCcEEEccccccCHHHHHHH
Q 007916 489 CVLEGCPKLRKLEIRDCPF-GNEA---LLSGLEKYESMRSLWMSACNVTMNACRRL 540 (585)
Q Consensus 489 ~l~~~~~~L~~L~l~~~~~-~~~~---l~~~~~~l~~L~~L~l~~~~it~~~~~~~ 540 (585)
.-+.+.|+|+.|+|..|+. ...+ =..++..+|+|+.|+ +-.+|.+.++..
T Consensus 82 ~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD--nv~VteeEle~A 135 (388)
T KOG2123|consen 82 EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD--NVPVTEEELEEA 135 (388)
T ss_pred HHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc--CccccHHHHHHH
Confidence 5568899999999998885 2111 123456778888764 334776655443
No 61
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.52 E-value=0.0026 Score=34.96 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=16.7
Q ss_pred CcCCcEEEccccc-cCHHHHHHHHh
Q 007916 519 YESMRSLWMSACN-VTMNACRRLAK 542 (585)
Q Consensus 519 l~~L~~L~l~~~~-it~~~~~~~~~ 542 (585)
|++|++|+|++|. ||+.|+..+.+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 4677777777776 77777776653
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.00056 Score=61.08 Aligned_cols=104 Identities=20% Similarity=0.266 Sum_probs=60.6
Q ss_pred CCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCC
Q 007916 118 YPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESF 197 (585)
Q Consensus 118 ~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 197 (585)
..+++.|++-+|.++|. .+...++.|+.|.|+-+. + ..+..+ ..|.+|++|.|+.|.|.+.+ -.....++
T Consensus 18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNk-I--ssL~pl-~rCtrLkElYLRkN~I~sld---EL~YLknl 87 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNK-I--SSLAPL-QRCTRLKELYLRKNCIESLD---ELEYLKNL 87 (388)
T ss_pred HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccc-c--ccchhH-HHHHHHHHHHHHhcccccHH---HHHHHhcC
Confidence 45667777777777763 233447777777777644 3 222222 36777888877777766642 11223566
Q ss_pred CCcCEEEeccCCCC--CChHHHHHHHhcCCCCcEEE
Q 007916 198 TSLEVLNFANLTSE--VNTDALERLVSRCKSLKVLK 231 (585)
Q Consensus 198 ~~L~~L~l~~~~~~--~~~~~l~~l~~~~~~L~~L~ 231 (585)
|+|+.|=|..+.+. -+...-...++.+|+|++|+
T Consensus 88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred chhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 66666666655433 22233334466677777775
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.44 E-value=0.0011 Score=59.01 Aligned_cols=42 Identities=31% Similarity=0.439 Sum_probs=22.0
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCc
Q 007916 143 FPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIED 184 (585)
Q Consensus 143 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 184 (585)
+|+|+.|.++.+..-...++..++..+|+|++|++++|.+.+
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence 455666666554222233444444555666666666665543
No 64
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.39 E-value=0.0025 Score=63.89 Aligned_cols=103 Identities=22% Similarity=0.277 Sum_probs=52.2
Q ss_pred CCccEEEecCCCCCCHHHHHHHHHhC-CCCCEEEcccCCCCccccccccccccCCCCcCEEEeccCCCCCChHHHHHHHh
Q 007916 144 PNFKLLSLLSCDGFSTDGLAAIATHC-KNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSEVNTDALERLVS 222 (585)
Q Consensus 144 ~~L~~L~l~~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 222 (585)
+.++.|.+.++. + ..++...... ++|++|+++++.+.... .-...+++|+.|+++.+.. . .+.....
T Consensus 116 ~~l~~L~l~~n~-i--~~i~~~~~~~~~nL~~L~l~~N~i~~l~-----~~~~~l~~L~~L~l~~N~l--~--~l~~~~~ 183 (394)
T COG4886 116 TNLTSLDLDNNN-I--TDIPPLIGLLKSNLKELDLSDNKIESLP-----SPLRNLPNLKNLDLSFNDL--S--DLPKLLS 183 (394)
T ss_pred cceeEEecCCcc-c--ccCccccccchhhcccccccccchhhhh-----hhhhccccccccccCCchh--h--hhhhhhh
Confidence 456666665543 2 2222223233 26666666666654421 1113566666666666531 1 1111122
Q ss_pred cCCCCcEEEecCCcchhHHHHHHHhCCccccccCccc
Q 007916 223 RCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSF 259 (585)
Q Consensus 223 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 259 (585)
..++|+.|+++++. +.+++..+.....|+++.+..+
T Consensus 184 ~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 184 NLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred hhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCC
Confidence 56677777777654 4444555455555666666553
No 65
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.39 E-value=0.002 Score=64.55 Aligned_cols=60 Identities=18% Similarity=0.241 Sum_probs=31.9
Q ss_pred cCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEcccccc
Q 007916 468 YAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNV 532 (585)
Q Consensus 468 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i 532 (585)
.+.++..+.+..+++.+ +...+..+++++.|++++|.+++... +....+|+.|+++++.+
T Consensus 230 ~~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 230 NLKNLSGLELSNNKLED--LPESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSL 289 (394)
T ss_pred hcccccccccCCceeee--ccchhccccccceecccccccccccc---ccccCccCEEeccCccc
Confidence 44555555555555433 12233455566666666666644321 44556666666666653
No 66
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.39 E-value=0.0033 Score=33.77 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=15.5
Q ss_pred CcCCcEEEccccccCHHHHHHHH
Q 007916 519 YESMRSLWMSACNVTMNACRRLA 541 (585)
Q Consensus 519 l~~L~~L~l~~~~it~~~~~~~~ 541 (585)
+++|++|+|++|+|+++|+..++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 46778888888888888877765
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.27 E-value=0.0031 Score=56.20 Aligned_cols=66 Identities=24% Similarity=0.374 Sum_probs=46.3
Q ss_pred cCccccceecccccC-ChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccC
Q 007916 468 YAKNLETLSVAFAGR-SDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVT 533 (585)
Q Consensus 468 ~~~~L~~L~l~~~~i-~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it 533 (585)
.+++|++|.++.|.. -..++..++..||+|++|++++|++.+..-..-+..+++|..|++.+|..+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 567888888888832 233466677778888888888888854322244566778888888888743
No 68
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.02 E-value=0.0078 Score=54.85 Aligned_cols=41 Identities=34% Similarity=0.644 Sum_probs=34.1
Q ss_pred hhhhhcCCCHHHHHHHHhccC----ChhHHHHHHHHhHHHHHHHh
Q 007916 16 ELAVTASFPDEVLEIVLSLLT----SHRDRSSVSLVCKDWYRAER 56 (585)
Q Consensus 16 ~~~~i~~LP~eil~~If~~L~----~~~d~~~~~~Vck~w~~~~~ 56 (585)
....|..||+||+..||+.+- +.+++.++++|||.|+-.+.
T Consensus 103 ~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R 147 (366)
T KOG2997|consen 103 ELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCAR 147 (366)
T ss_pred hhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHc
Confidence 345588999999999999762 34789999999999998765
No 69
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.81 E-value=0.0055 Score=52.32 Aligned_cols=88 Identities=23% Similarity=0.293 Sum_probs=55.8
Q ss_pred hcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHH-HH-HHHhcC
Q 007916 443 KTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEA-LL-SGLEKY 519 (585)
Q Consensus 443 ~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-l~-~~~~~l 519 (585)
..+++|.+|.+++ .|++-. ..+...+++|+.|.+.+|.+..-|=..-+.+||+|+.|.+-+|+.++.. .. .++..+
T Consensus 61 p~l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~kl 139 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKL 139 (233)
T ss_pred CCccccceEEecCCcceeec-cchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEec
Confidence 3456777777766 444221 2233467788888888887644322222467999999999999874431 11 223577
Q ss_pred cCCcEEEccccc
Q 007916 520 ESMRSLWMSACN 531 (585)
Q Consensus 520 ~~L~~L~l~~~~ 531 (585)
|+|+.||+.+=.
T Consensus 140 p~l~~LDF~kVt 151 (233)
T KOG1644|consen 140 PSLRTLDFQKVT 151 (233)
T ss_pred CcceEeehhhhh
Confidence 999999887644
No 70
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=95.60 E-value=0.018 Score=32.25 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=19.6
Q ss_pred cCCcEEEccccccCHHHHHHHHhhCC
Q 007916 520 ESMRSLWMSACNVTMNACRRLAKQMP 545 (585)
Q Consensus 520 ~~L~~L~l~~~~it~~~~~~~~~~~p 545 (585)
++|++|+|++|.|+++|+..+.+.+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEALK 27 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHhc
Confidence 56788888888888888877776643
No 71
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=95.55 E-value=0.011 Score=56.70 Aligned_cols=38 Identities=18% Similarity=0.451 Sum_probs=34.8
Q ss_pred hhcCCCHHHHHHHHhccCChhHHHHHHHHhHHHHHHHh
Q 007916 19 VTASFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAER 56 (585)
Q Consensus 19 ~i~~LP~eil~~If~~L~~~~d~~~~~~Vck~w~~~~~ 56 (585)
++..||+|++..|...|+..-|+.+.+.||+.||..+.
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 46789999999999999878899999999999999765
No 72
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.44 E-value=0.0034 Score=49.96 Aligned_cols=118 Identities=17% Similarity=0.117 Sum_probs=79.0
Q ss_pred CCCcEEEcccCCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEE
Q 007916 446 SKLQRLSVSGLLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSL 525 (585)
Q Consensus 446 ~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L 525 (585)
..|...+++++.-......+...++.++.|++++|.+.| ++.-+..+|.|+.|++..|++.. .+..+..+.+|-.|
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l~~--~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRSLNLRFNPLNA--EPRVIAPLIKLDML 128 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhhcccccCcccc--chHHHHHHHhHHHh
Confidence 557777887622223333455578899999999999887 44346789999999999999844 33455557888888
Q ss_pred EccccccCHHHHHHHHhhCCCCcEEEeccCCCCCCccceeeeee
Q 007916 526 WMSACNVTMNACRRLAKQMPRLNVEVMKEDGSDDSQADKVYIYR 569 (585)
Q Consensus 526 ~l~~~~it~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~ 569 (585)
+..+|.+-+-....+-...|.+ +.. .-++-.+....+.++|.
T Consensus 129 ds~~na~~eid~dl~~s~~~al-~~l-gnepl~~~~~~klqa~k 170 (177)
T KOG4579|consen 129 DSPENARAEIDVDLFYSSLPAL-IKL-GNEPLGDETKKKLQALK 170 (177)
T ss_pred cCCCCccccCcHHHhccccHHH-HHh-cCCcccccCcccccccC
Confidence 9888885554444565555553 222 22344556667777776
No 73
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.07 E-value=0.028 Score=51.73 Aligned_cols=38 Identities=32% Similarity=0.593 Sum_probs=34.9
Q ss_pred hhhcCCC----HHHHHHHHhccCChhHHHHHHHHhHHHHHHHh
Q 007916 18 AVTASFP----DEVLEIVLSLLTSHRDRSSVSLVCKDWYRAER 56 (585)
Q Consensus 18 ~~i~~LP----~eil~~If~~L~~~~d~~~~~~Vck~w~~~~~ 56 (585)
+.|..|| ++|.+.||+|| +..++..+-+|||.|+++..
T Consensus 73 DFi~~lP~~gl~hi~e~ilsyl-d~~sLc~celv~k~W~r~l~ 114 (499)
T KOG0281|consen 73 DFITALPEQGLDHIAENILSYL-DALSLCACELVCKEWKRVLS 114 (499)
T ss_pred HHHHhcccccHHHHHHHHHHhc-chhhhhHHHHHHHHHHHHhc
Confidence 6689999 99999999999 58899999999999999864
No 74
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.04 E-value=0.015 Score=49.79 Aligned_cols=97 Identities=12% Similarity=0.091 Sum_probs=63.1
Q ss_pred CCcEEEcccCCChhHHHHHh--hcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcE
Q 007916 447 KLQRLSVSGLLTDLTFEYIG--KYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRS 524 (585)
Q Consensus 447 ~L~~L~l~~~~~~~~~~~l~--~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~ 524 (585)
+...+++++ +.+..+. ..++.|..|.+++|.|+..+- .+....|+|+.|.+.+|.+..-+=..-+..||+|++
T Consensus 43 ~~d~iDLtd----Ndl~~l~~lp~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 43 QFDAIDLTD----NDLRKLDNLPHLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccceecccc----cchhhcccCCCccccceEEecCCcceeecc-chhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 445555544 3333332 367899999999999876321 123447999999999999833222245678999999
Q ss_pred EEccccccCHH-H-HHHHHhhCCCCc
Q 007916 525 LWMSACNVTMN-A-CRRLAKQMPRLN 548 (585)
Q Consensus 525 L~l~~~~it~~-~-~~~~~~~~p~l~ 548 (585)
|.+-+|+++.. . ..++...+|+++
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~ 143 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLR 143 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcce
Confidence 99999998663 1 223333456643
No 75
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.77 E-value=0.018 Score=30.89 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=8.2
Q ss_pred ccccceecccccCChHHHHH
Q 007916 470 KNLETLSVAFAGRSDRGMQC 489 (585)
Q Consensus 470 ~~L~~L~l~~~~i~~~~l~~ 489 (585)
++|+.|+|++|+|+++|+..
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 34444444444444444443
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=94.73 E-value=0.036 Score=30.34 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=10.5
Q ss_pred ccccceeccccc-CChHHHHHH
Q 007916 470 KNLETLSVAFAG-RSDRGMQCV 490 (585)
Q Consensus 470 ~~L~~L~l~~~~-i~~~~l~~l 490 (585)
++|+.|+|++|. +||.|+..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 445555555552 555555443
No 77
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=93.89 E-value=0.0047 Score=61.10 Aligned_cols=80 Identities=21% Similarity=0.219 Sum_probs=40.8
Q ss_pred HhCCCCCEEEcccCCCCccccccccccccCCCCcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcchhHHHHHH
Q 007916 167 THCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSISLEQLQRLL 245 (585)
Q Consensus 167 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 245 (585)
.++..|++|+|+.|.+...+.. -+.--|+.|-++++... ++++ +...+.|..|+.+.|. +..++.-+
T Consensus 118 ~~L~~lt~l~ls~NqlS~lp~~------lC~lpLkvli~sNNkl~~lp~~-----ig~~~tl~~ld~s~ne-i~slpsql 185 (722)
T KOG0532|consen 118 CNLEALTFLDLSSNQLSHLPDG------LCDLPLKVLIVSNNKLTSLPEE-----IGLLPTLAHLDVSKNE-IQSLPSQL 185 (722)
T ss_pred hhhhHHHHhhhccchhhcCChh------hhcCcceeEEEecCccccCCcc-----cccchhHHHhhhhhhh-hhhchHHh
Confidence 3555666666666654432211 12334566665555433 3333 3445566666666544 34445555
Q ss_pred HhCCccccccCcc
Q 007916 246 VRAPQLEELGTGS 258 (585)
Q Consensus 246 ~~~~~L~~L~l~~ 258 (585)
..+.+|+.|.+..
T Consensus 186 ~~l~slr~l~vrR 198 (722)
T KOG0532|consen 186 GYLTSLRDLNVRR 198 (722)
T ss_pred hhHHHHHHHHHhh
Confidence 5555666555544
No 78
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.83 E-value=0.037 Score=53.93 Aligned_cols=54 Identities=17% Similarity=0.039 Sum_probs=25.8
Q ss_pred cCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecC
Q 007916 301 SCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFP 361 (585)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~ 361 (585)
.+.+++.|++++|.+.. ++ .--++|++|.+.+|..-..++..+ .++|+.|.+.+
T Consensus 50 ~~~~l~~L~Is~c~L~s--LP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~ 103 (426)
T PRK15386 50 EARASGRLYIKDCDIES--LP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCH 103 (426)
T ss_pred HhcCCCEEEeCCCCCcc--cC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccC
Confidence 35777777777765333 22 112356666666543222222111 13455555555
No 79
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.74 E-value=0.028 Score=44.92 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=18.8
Q ss_pred HhcCCCCcEEEecCCcchhHHHHHHHhCCccccccCcc
Q 007916 221 VSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGS 258 (585)
Q Consensus 221 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 258 (585)
+..++.|+.|+++.|.. ...++.+..+.++..|+...
T Consensus 96 ~Aam~aLr~lNl~~N~l-~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 96 LAAMPALRSLNLRFNPL-NAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred HhhhHHhhhcccccCcc-ccchHHHHHHHhHHHhcCCC
Confidence 44556666666665542 22344444455555555444
No 80
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.50 E-value=0.02 Score=57.64 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=52.1
Q ss_pred CccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEcccCCChhHHHH
Q 007916 385 CRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTDLTFEY 464 (585)
Q Consensus 385 ~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 464 (585)
+.+|+.+++..+.+... ......+++|+.|+++++.+ ++ ..+ +..++.|+.|++++ +.+..
T Consensus 94 ~~~l~~l~l~~n~i~~i--~~~l~~~~~L~~L~ls~N~I------~~---i~~----l~~l~~L~~L~l~~----N~i~~ 154 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKI--ENLLSSLVNLQVLDLSFNKI------TK---LEG----LSTLTLLKELNLSG----NLISD 154 (414)
T ss_pred ccceeeeeccccchhhc--ccchhhhhcchheecccccc------cc---ccc----hhhccchhhheecc----Ccchh
Confidence 55666666666666432 12123567777777765432 21 111 12234466666655 11111
Q ss_pred Hhh--cCccccceecccccCChHHHHHHHhcCCCccEEEecCCCC
Q 007916 465 IGK--YAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPF 507 (585)
Q Consensus 465 l~~--~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~ 507 (585)
+.. .++.|+.+++++|.+++..-.. +..+.+|+.+++.+|.+
T Consensus 155 ~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 155 ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence 211 2566666666666665422101 35566677777766665
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=93.07 E-value=0.15 Score=50.86 Aligned_cols=93 Identities=13% Similarity=0.142 Sum_probs=64.0
Q ss_pred HHHHHhhcCccccceecccccC-ChHHHHHHHhcCCCccEEEecCC--CC-ChHHHHHHHhcCcCCcEEEccccccCH--
Q 007916 461 TFEYIGKYAKNLETLSVAFAGR-SDRGMQCVLEGCPKLRKLEIRDC--PF-GNEALLSGLEKYESMRSLWMSACNVTM-- 534 (585)
Q Consensus 461 ~~~~l~~~~~~L~~L~l~~~~i-~~~~l~~l~~~~~~L~~L~l~~~--~~-~~~~l~~~~~~l~~L~~L~l~~~~it~-- 534 (585)
.+..+....+.+..++|++|++ .-+++..+.+..|+|+.|+|++| .+ ++..+.+ -+...|++|.+.||++..
T Consensus 209 ~L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K--~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 209 VLKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK--LKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred HHHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh--hcCCCHHHeeecCCccccch
Confidence 3444556788888888888875 33457777788999999999999 44 2322221 144689999999999532
Q ss_pred ----HHHHHHHhhCCCCcEEEeccCCC
Q 007916 535 ----NACRRLAKQMPRLNVEVMKEDGS 557 (585)
Q Consensus 535 ----~~~~~~~~~~p~l~~~~~~~~~~ 557 (585)
+-+..+++.+|+| ..++|-.+
T Consensus 287 ~~~s~yv~~i~~~FPKL--~~LDG~ev 311 (585)
T KOG3763|consen 287 SDRSEYVSAIRELFPKL--LRLDGVEV 311 (585)
T ss_pred hhhHHHHHHHHHhcchh--eeecCccc
Confidence 5677888899986 34444433
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=92.32 E-value=0.19 Score=28.01 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=9.8
Q ss_pred cccceecccccCChHHHHHH
Q 007916 471 NLETLSVAFAGRSDRGMQCV 490 (585)
Q Consensus 471 ~L~~L~l~~~~i~~~~l~~l 490 (585)
+|+.|+|++|.++++|...+
T Consensus 3 ~L~~LdL~~N~i~~~G~~~L 22 (28)
T smart00368 3 SLRELDLSNNKLGDEGARAL 22 (28)
T ss_pred ccCEEECCCCCCCHHHHHHH
Confidence 44455555555555444444
No 83
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=92.03 E-value=0.048 Score=54.90 Aligned_cols=106 Identities=16% Similarity=0.091 Sum_probs=74.9
Q ss_pred hCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCCh-hHHHHHhhcCccccceecccccCChHH
Q 007916 409 NCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTD-LTFEYIGKYAKNLETLSVAFAGRSDRG 486 (585)
Q Consensus 409 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~-~~~~~l~~~~~~L~~L~l~~~~i~~~~ 486 (585)
.+.+|+.+.+.++.+ . .+......+++|++|++++ .|++ .++. .++.|+.|++.+|.|++
T Consensus 93 ~~~~l~~l~l~~n~i------~------~i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~N~i~~-- 154 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKI------E------KIENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSGNLISD-- 154 (414)
T ss_pred cccceeeeeccccch------h------hcccchhhhhcchheeccccccccccchh----hccchhhheeccCcchh--
Confidence 678899998885543 2 2222245689999999988 4433 2232 55669999999999875
Q ss_pred HHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccCH
Q 007916 487 MQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTM 534 (585)
Q Consensus 487 l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it~ 534 (585)
+.. +..+++|+.+++++|.+++..-.. ...+.+++.+.+.+|.+..
T Consensus 155 ~~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 155 ISG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred ccC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 222 245889999999999985532211 5788999999999998543
No 84
>PRK15386 type III secretion protein GogB; Provisional
Probab=91.15 E-value=0.39 Score=47.07 Aligned_cols=12 Identities=25% Similarity=0.282 Sum_probs=8.4
Q ss_pred CCCcEEEecccc
Q 007916 303 ANLTFLNLSYTA 314 (585)
Q Consensus 303 ~~L~~L~l~~~~ 314 (585)
++|++|++++|.
T Consensus 156 sSLk~L~Is~c~ 167 (426)
T PRK15386 156 PSLKTLSLTGCS 167 (426)
T ss_pred CcccEEEecCCC
Confidence 567777777665
No 85
>PF13013 F-box-like_2: F-box-like domain
Probab=90.16 E-value=0.47 Score=36.79 Aligned_cols=30 Identities=17% Similarity=0.328 Sum_probs=26.2
Q ss_pred hhcCCCHHHHHHHHhccCChhHHHHHHHHhH
Q 007916 19 VTASFPDEVLEIVLSLLTSHRDRSSVSLVCK 49 (585)
Q Consensus 19 ~i~~LP~eil~~If~~L~~~~d~~~~~~Vck 49 (585)
.+.+||+||+..||.|.. ..+...+...|+
T Consensus 21 tl~DLP~ELl~~I~~~C~-~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCN-DPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcC-cHHHHHHHHHHH
Confidence 478899999999999995 678888888887
No 86
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=90.12 E-value=0.073 Score=53.12 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=28.1
Q ss_pred cCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEcccccc
Q 007916 468 YAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNV 532 (585)
Q Consensus 468 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i 532 (585)
.+.+|+.|.+..|++.+ +..-+. +=.|.+||+++|+++- ++.-+.+++.|++|-|.+|++
T Consensus 187 ~l~slr~l~vrRn~l~~--lp~El~-~LpLi~lDfScNkis~--iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNHLED--LPEELC-SLPLIRLDFSCNKISY--LPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred hHHHHHHHHHhhhhhhh--CCHHHh-CCceeeeecccCceee--cchhhhhhhhheeeeeccCCC
Confidence 34445555555554322 111111 3355556665555522 333445555666666665554
No 87
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.19 E-value=0.29 Score=23.57 Aligned_cols=14 Identities=29% Similarity=0.375 Sum_probs=6.3
Q ss_pred cCCcEEEccccccC
Q 007916 520 ESMRSLWMSACNVT 533 (585)
Q Consensus 520 ~~L~~L~l~~~~it 533 (585)
++|+.|+|++|+++
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 35666666666543
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=83.40 E-value=2 Score=43.19 Aligned_cols=38 Identities=29% Similarity=0.458 Sum_probs=16.9
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccC
Q 007916 143 FPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQEN 180 (585)
Q Consensus 143 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 180 (585)
+|.+..++++++.-.....+..+....|+|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 44444444444432233333444444455555555544
No 89
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=82.88 E-value=0.51 Score=48.66 Aligned_cols=42 Identities=26% Similarity=0.456 Sum_probs=37.2
Q ss_pred hhhhhhhcCCCHHHHHHHHhccCChhHHHHHHHHhHHHHHHHh
Q 007916 14 TAELAVTASFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAER 56 (585)
Q Consensus 14 ~~~~~~i~~LP~eil~~If~~L~~~~d~~~~~~Vck~w~~~~~ 56 (585)
....+.+..||.|+..+||.||+ .+++.++++||+.|+.++.
T Consensus 102 ~~~~dfi~~lp~el~~~il~~Ld-~~~l~~~~~v~~~w~~~~~ 143 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILSFLD-GRDLLAVRQVCRNWNKLLD 143 (537)
T ss_pred ccccchhhcccchhcccccccCC-HHHhhhhhhhcchhhhhhh
Confidence 34457799999999999999995 8999999999999999865
No 90
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=80.19 E-value=1 Score=23.36 Aligned_cols=13 Identities=31% Similarity=0.330 Sum_probs=9.8
Q ss_pred CCcEEEccccccC
Q 007916 521 SMRSLWMSACNVT 533 (585)
Q Consensus 521 ~L~~L~l~~~~it 533 (585)
+|++|+|++|+++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4778888888765
No 91
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=79.05 E-value=1.3 Score=24.11 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=11.1
Q ss_pred ccceecccccCChH-HHHHHHhcCC
Q 007916 472 LETLSVAFAGRSDR-GMQCVLEGCP 495 (585)
Q Consensus 472 L~~L~l~~~~i~~~-~l~~l~~~~~ 495 (585)
|+.|+|....+.++ .+..++.+||
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccCc
Confidence 44555554444332 4444555444
No 92
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=69.14 E-value=10 Score=35.75 Aligned_cols=83 Identities=14% Similarity=0.171 Sum_probs=47.6
Q ss_pred CCCcEEEccc--CCChhHHHHHhhc---CccccceecccccCCh---HHHHHHHhcCCCccEEEecCCCCChHHHHHHHh
Q 007916 446 SKLQRLSVSG--LLTDLTFEYIGKY---AKNLETLSVAFAGRSD---RGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLE 517 (585)
Q Consensus 446 ~~L~~L~l~~--~~~~~~~~~l~~~---~~~L~~L~l~~~~i~~---~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~ 517 (585)
+.++..++++ ++....+..++.. ....+...+.+...+| .++..++..|+.|+.|++.+|.+|..++..++.
T Consensus 198 ~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~~ 277 (353)
T KOG3735|consen 198 TGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALLR 277 (353)
T ss_pred CCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHHH
Confidence 4555555544 4444444444322 2334444454443332 245556677888888888888888887777776
Q ss_pred cCc---CCcEEEcc
Q 007916 518 KYE---SMRSLWMS 528 (585)
Q Consensus 518 ~l~---~L~~L~l~ 528 (585)
.+. +|.++.+.
T Consensus 278 al~~n~tl~el~~d 291 (353)
T KOG3735|consen 278 ALQSNKSLTELKND 291 (353)
T ss_pred HHhccchhhHhhhh
Confidence 663 44444433
No 93
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=68.44 E-value=5.1 Score=30.56 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=21.7
Q ss_pred hhhcCCCHHHHHHHHhccCChhHHHHH
Q 007916 18 AVTASFPDEVLEIVLSLLTSHRDRSSV 44 (585)
Q Consensus 18 ~~i~~LP~eil~~If~~L~~~~d~~~~ 44 (585)
..+..||.||...|++||+ -+|+..+
T Consensus 70 ~~w~~LP~EIk~~Il~~L~-~~dL~~l 95 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLS-NKDLKKL 95 (97)
T ss_pred CchhhCCHHHHHHHHHcCC-HHHHHHH
Confidence 4588999999999999994 7787653
No 94
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=65.91 E-value=5.1 Score=21.60 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=12.0
Q ss_pred CcCCcEEEccccccCH
Q 007916 519 YESMRSLWMSACNVTM 534 (585)
Q Consensus 519 l~~L~~L~l~~~~it~ 534 (585)
+++|+.|+|++|+|+.
T Consensus 1 L~~L~~L~L~~N~l~~ 16 (26)
T smart00370 1 LPNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCCEEECCCCcCCc
Confidence 3678888888888543
No 95
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=65.91 E-value=5.1 Score=21.60 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=12.0
Q ss_pred CcCCcEEEccccccCH
Q 007916 519 YESMRSLWMSACNVTM 534 (585)
Q Consensus 519 l~~L~~L~l~~~~it~ 534 (585)
+++|+.|+|++|+|+.
T Consensus 1 L~~L~~L~L~~N~l~~ 16 (26)
T smart00369 1 LPNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCCEEECCCCcCCc
Confidence 3678888888888543
No 96
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=58.18 E-value=21 Score=33.82 Aligned_cols=89 Identities=13% Similarity=0.140 Sum_probs=65.1
Q ss_pred ChhHHHHHhhcCccccceeccccc-CChHHHHHHHhc---CCCccEEEecCCCCChH---HHHHHHhcCcCCcEEEcccc
Q 007916 458 TDLTFEYIGKYAKNLETLSVAFAG-RSDRGMQCVLEG---CPKLRKLEIRDCPFGNE---ALLSGLEKYESMRSLWMSAC 530 (585)
Q Consensus 458 ~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~l~~l~~~---~~~L~~L~l~~~~~~~~---~l~~~~~~l~~L~~L~l~~~ 530 (585)
.+..+..+...-+.|+...+++.. |+..-+...... ....+...+.+-...|. ++..++..++.|++|++.+|
T Consensus 186 ~e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesn 265 (353)
T KOG3735|consen 186 VESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESN 265 (353)
T ss_pred HHHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheecccc
Confidence 346677777788999999999884 665555555444 34566666666555443 44455677899999999999
Q ss_pred ccCHHHHHHHHhhCCC
Q 007916 531 NVTMNACRRLAKQMPR 546 (585)
Q Consensus 531 ~it~~~~~~~~~~~p~ 546 (585)
.||..|+..+...+..
T Consensus 266 FItg~gi~a~~~al~~ 281 (353)
T KOG3735|consen 266 FITGLGIMALLRALQS 281 (353)
T ss_pred ccccHHHHHHHHHHhc
Confidence 9999999998888764
No 97
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=57.82 E-value=8.7 Score=20.97 Aligned_cols=14 Identities=14% Similarity=0.240 Sum_probs=10.2
Q ss_pred cCCcEEEccccccC
Q 007916 520 ESMRSLWMSACNVT 533 (585)
Q Consensus 520 ~~L~~L~l~~~~it 533 (585)
.+|++|+++.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 56777888877764
No 98
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=57.14 E-value=2.6 Score=34.05 Aligned_cols=81 Identities=15% Similarity=0.337 Sum_probs=27.1
Q ss_pred hcCCCCcEEEcccCCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCC
Q 007916 443 KTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESM 522 (585)
Q Consensus 443 ~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L 522 (585)
.+|+.|+.+.+.+.+..-.-..+. .+++|+.+.+..+ +...+ ...+..|++|+.+.+..+ ++..+- ..+.++ +|
T Consensus 32 ~~~~~l~~i~~~~~~~~i~~~~F~-~~~~l~~i~~~~~-~~~i~-~~~F~~~~~l~~i~~~~~-~~~i~~-~~f~~~-~l 105 (129)
T PF13306_consen 32 SNCTSLKSINFPNNLTSIGDNAFS-NCKSLESITFPNN-LKSIG-DNAFSNCTNLKNIDIPSN-ITEIGS-SSFSNC-NL 105 (129)
T ss_dssp TT-TT-SEEEESSTTSCE-TTTTT-T-TT-EEEEETST-T-EE--TTTTTT-TTECEEEETTT--BEEHT-TTTTT--T-
T ss_pred ccccccccccccccccccceeeee-ccccccccccccc-ccccc-cccccccccccccccCcc-ccEEch-hhhcCC-Cc
Confidence 345556666665421111111111 4445666666432 11100 012344566666666443 211100 223444 56
Q ss_pred cEEEccc
Q 007916 523 RSLWMSA 529 (585)
Q Consensus 523 ~~L~l~~ 529 (585)
+.+.+.+
T Consensus 106 ~~i~~~~ 112 (129)
T PF13306_consen 106 KEINIPS 112 (129)
T ss_dssp -EEE-TT
T ss_pred eEEEECC
Confidence 6665554
No 99
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=50.73 E-value=14 Score=33.57 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=31.1
Q ss_pred hhcCCCHHHHHHHHhccCChhHHHHHHHHhHHHHHHH
Q 007916 19 VTASFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAE 55 (585)
Q Consensus 19 ~i~~LP~eil~~If~~L~~~~d~~~~~~Vck~w~~~~ 55 (585)
.+.+||.|+...|+..|++.+|+.+++.|-..-..++
T Consensus 201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~ 237 (332)
T KOG3926|consen 201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLS 237 (332)
T ss_pred CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHH
Confidence 4779999999999999999999999998865555543
No 100
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=33.19 E-value=26 Score=19.16 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=10.0
Q ss_pred cCCcEEEccccccC
Q 007916 520 ESMRSLWMSACNVT 533 (585)
Q Consensus 520 ~~L~~L~l~~~~it 533 (585)
++|+.|++++|+++
T Consensus 2 ~~L~~L~vs~N~Lt 15 (26)
T smart00364 2 PSLKELNVSNNQLT 15 (26)
T ss_pred cccceeecCCCccc
Confidence 46777888888754
No 101
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=25.86 E-value=2.1e+02 Score=19.77 Aligned_cols=20 Identities=35% Similarity=0.444 Sum_probs=9.0
Q ss_pred ccEEEecCCCCChHHHHHHH
Q 007916 497 LRKLEIRDCPFGNEALLSGL 516 (585)
Q Consensus 497 L~~L~l~~~~~~~~~l~~~~ 516 (585)
-+.+.+.++.++...+...+
T Consensus 34 c~~i~l~~~~~t~~dln~Fl 53 (70)
T PF07735_consen 34 CKKIELWNSKFTNEDLNKFL 53 (70)
T ss_pred CCEEEEECCCCCHHHHHHHH
Confidence 34444444444444444444
No 102
>PF14287 DUF4368: Domain of unknown function (DUF4368)
Probab=20.97 E-value=1.7e+02 Score=20.72 Aligned_cols=37 Identities=24% Similarity=0.380 Sum_probs=30.3
Q ss_pred cCHHHHHHHHhhCCCCcEEEeccCCCCCCccceeeeeecccC
Q 007916 532 VTMNACRRLAKQMPRLNVEVMKEDGSDDSQADKVYIYRTVAG 573 (585)
Q Consensus 532 it~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (585)
+|...+..|... +.+-...+..+...+++.+||+-.|
T Consensus 29 Lt~~il~elIdk-----I~V~e~~~~~~~r~q~I~I~ynfiG 65 (71)
T PF14287_consen 29 LTPEILNELIDK-----IVVHEPEKSDGKRTQKIEIYYNFIG 65 (71)
T ss_pred CCHHHHHHHHHe-----EEEeccccCCCcEEEEEEEEEEeeE
Confidence 678888888775 8887777888888999999998654
Done!