Query 007916
Match_columns 585
No_of_seqs 286 out of 3243
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 13:40:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007916.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007916hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 5.7E-61 1.9E-65 507.9 52.6 567 18-585 4-576 (594)
2 3ogk_B Coronatine-insensitive 100.0 3.4E-59 1.1E-63 494.0 41.4 557 21-585 14-588 (592)
3 3ogk_B Coronatine-insensitive 100.0 3.3E-31 1.1E-35 279.8 33.7 417 111-560 65-528 (592)
4 2p1m_B Transport inhibitor res 100.0 3.6E-30 1.2E-34 272.1 32.7 412 74-531 99-542 (594)
5 1z7x_W Ribonuclease inhibitor; 100.0 5.3E-29 1.8E-33 254.4 32.8 394 111-549 20-459 (461)
6 1z7x_W Ribonuclease inhibitor; 100.0 9.9E-29 3.4E-33 252.4 29.8 380 119-546 3-424 (461)
7 2ast_B S-phase kinase-associat 99.9 5.6E-24 1.9E-28 207.5 22.4 215 18-258 7-231 (336)
8 3rgz_A Protein brassinosteroid 99.9 1.3E-25 4.6E-30 242.7 0.2 379 117-533 221-693 (768)
9 3rgz_A Protein brassinosteroid 99.9 4.7E-26 1.6E-30 246.2 -6.4 135 116-261 123-259 (768)
10 3t6q_A CD180 antigen; protein- 99.9 1.8E-25 6.1E-30 236.4 -3.8 135 75-235 52-189 (606)
11 4fmz_A Internalin; leucine ric 99.9 1E-21 3.4E-26 192.4 17.9 303 118-533 43-346 (347)
12 3t6q_A CD180 antigen; protein- 99.9 4.1E-25 1.4E-29 233.7 -7.2 425 80-547 33-526 (606)
13 1o6v_A Internalin A; bacterial 99.9 2.6E-21 8.8E-26 197.1 19.2 324 116-534 65-389 (466)
14 2z81_A CD282 antigen, TOLL-lik 99.9 2.3E-22 7.7E-27 210.1 9.8 133 117-259 48-182 (549)
15 2z81_A CD282 antigen, TOLL-lik 99.9 1E-21 3.5E-26 205.1 14.2 398 75-533 45-510 (549)
16 2z7x_B TOLL-like receptor 1, v 99.9 5.1E-23 1.7E-27 213.3 3.6 157 349-533 321-481 (520)
17 3vq2_A TLR4, TOLL-like recepto 99.9 3.3E-24 1.1E-28 226.7 -5.9 136 385-533 398-534 (606)
18 2z7x_B TOLL-like receptor 1, v 99.9 1.3E-22 4.5E-27 210.2 4.6 178 352-558 302-481 (520)
19 2z63_A TOLL-like receptor 4, v 99.9 4.9E-24 1.7E-28 223.9 -6.7 108 117-236 50-160 (570)
20 4eco_A Uncharacterized protein 99.9 1.4E-23 4.7E-28 221.7 -3.8 334 162-532 198-578 (636)
21 3vq2_A TLR4, TOLL-like recepto 99.8 1.1E-23 3.7E-28 222.8 -5.1 224 301-555 305-531 (606)
22 1o6v_A Internalin A; bacterial 99.8 4.1E-21 1.4E-25 195.6 14.1 337 118-552 45-382 (466)
23 4ecn_A Leucine-rich repeat pro 99.8 3.1E-23 1E-27 222.5 -2.2 333 162-532 440-818 (876)
24 2z63_A TOLL-like receptor 4, v 99.8 7.6E-24 2.6E-28 222.4 -8.7 114 75-209 47-160 (570)
25 4fmz_A Internalin; leucine ric 99.8 1.5E-19 5E-24 177.0 22.0 305 77-508 41-346 (347)
26 2ca6_A RAN GTPase-activating p 99.8 1.5E-19 5.3E-24 179.3 18.8 210 299-549 90-334 (386)
27 3v47_A TOLL-like receptor 5B a 99.8 4.8E-22 1.6E-26 202.5 0.6 364 119-534 30-409 (455)
28 1ziw_A TOLL-like receptor 3; i 99.8 3.2E-22 1.1E-26 214.3 -1.4 65 469-534 453-518 (680)
29 3j0a_A TOLL-like receptor 5; m 99.8 5E-23 1.7E-27 224.9 -9.2 62 300-362 287-348 (844)
30 4eco_A Uncharacterized protein 99.8 6.7E-23 2.3E-27 216.4 -9.1 345 142-533 204-600 (636)
31 3o6n_A APL1; leucine-rich repe 99.8 9.5E-21 3.2E-25 188.4 5.8 324 118-550 44-369 (390)
32 2ast_B S-phase kinase-associat 99.8 1E-18 3.6E-23 170.1 18.5 206 301-551 91-302 (336)
33 1ziw_A TOLL-like receptor 3; i 99.8 1.1E-21 3.7E-26 210.3 -3.1 395 80-532 25-442 (680)
34 3j0a_A TOLL-like receptor 5; m 99.8 1.9E-21 6.6E-26 212.4 -1.9 400 78-533 22-464 (844)
35 4ecn_A Leucine-rich repeat pro 99.8 8.3E-22 2.8E-26 211.5 -6.3 348 116-533 445-840 (876)
36 3v47_A TOLL-like receptor 5B a 99.8 5.7E-21 2E-25 194.5 0.1 356 144-562 30-412 (455)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 5.3E-21 1.8E-25 199.7 -1.8 157 349-533 350-510 (562)
38 3oja_B Anopheles plasmodium-re 99.8 9.8E-20 3.4E-24 191.2 5.7 323 118-549 50-374 (597)
39 2id5_A Lingo-1, leucine rich r 99.8 4E-20 1.4E-24 189.3 -0.6 178 144-362 32-210 (477)
40 2ca6_A RAN GTPase-activating p 99.8 9.2E-17 3.1E-21 159.3 23.2 248 295-561 24-319 (386)
41 2id5_A Lingo-1, leucine rich r 99.7 6.4E-20 2.2E-24 187.7 -1.4 299 119-507 32-332 (477)
42 3o6n_A APL1; leucine-rich repe 99.7 4.9E-19 1.7E-23 176.1 4.5 323 78-523 43-367 (390)
43 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 7.4E-19 2.5E-23 183.5 3.7 391 119-558 52-510 (562)
44 3bz5_A Internalin-J, INLJ; leu 99.7 8.4E-18 2.9E-22 169.6 9.7 206 77-363 39-244 (457)
45 3goz_A Leucine-rich repeat-con 99.7 1.8E-16 6E-21 155.6 16.1 220 300-535 47-299 (362)
46 3oja_B Anopheles plasmodium-re 99.7 3E-18 1E-22 179.9 2.9 318 79-519 50-369 (597)
47 3goz_A Leucine-rich repeat-con 99.7 1E-15 3.5E-20 150.1 17.6 244 294-553 13-290 (362)
48 3bz5_A Internalin-J, INLJ; leu 99.7 5.9E-17 2E-21 163.4 6.9 220 59-361 44-263 (457)
49 1jl5_A Outer protein YOPM; leu 99.6 4.1E-17 1.4E-21 164.4 0.6 303 119-534 91-410 (454)
50 1jl5_A Outer protein YOPM; leu 99.6 2.6E-17 8.7E-22 165.9 -1.2 180 299-534 191-371 (454)
51 1xku_A Decorin; proteoglycan, 99.6 2.6E-16 9.1E-21 152.5 4.8 289 145-531 32-330 (330)
52 2z80_A TOLL-like receptor 2, v 99.6 1.1E-15 3.7E-20 149.6 7.3 64 468-533 247-314 (353)
53 4g8a_A TOLL-like receptor 4; l 99.6 2.7E-17 9.3E-22 175.0 -4.7 108 117-236 74-184 (635)
54 2ft3_A Biglycan; proteoglycan, 99.6 2.6E-16 8.8E-21 152.6 0.8 288 145-531 34-331 (332)
55 3g06_A SSPH2 (leucine-rich rep 99.5 1E-14 3.5E-19 151.5 10.4 85 445-541 220-305 (622)
56 3o53_A Protein LRIM1, AGAP0063 99.5 4.3E-16 1.5E-20 149.8 -0.5 244 219-530 28-272 (317)
57 1xku_A Decorin; proteoglycan, 99.5 1.3E-15 4.5E-20 147.6 2.3 64 443-506 260-330 (330)
58 1wwl_A Monocyte differentiatio 99.5 7.2E-17 2.5E-21 154.8 -8.2 208 301-534 93-310 (312)
59 1ogq_A PGIP-2, polygalacturona 99.5 2.2E-17 7.7E-22 158.3 -12.0 84 443-531 218-302 (313)
60 4g8a_A TOLL-like receptor 4; l 99.5 9.8E-17 3.4E-21 170.7 -9.0 422 74-533 70-580 (635)
61 3un9_A NLR family member X1; l 99.5 2.4E-13 8.1E-18 132.7 15.4 146 387-542 102-261 (372)
62 3o53_A Protein LRIM1, AGAP0063 99.5 1.4E-15 4.8E-20 146.2 -1.4 253 227-548 12-265 (317)
63 2z66_A Variable lymphocyte rec 99.5 1.8E-15 6.3E-20 144.8 -2.2 64 468-533 197-261 (306)
64 1ogq_A PGIP-2, polygalacturona 99.5 3.1E-15 1.1E-19 143.4 -2.2 130 119-259 50-184 (313)
65 3g06_A SSPH2 (leucine-rich rep 99.4 2.1E-13 7.2E-18 141.7 11.1 79 410-510 220-299 (622)
66 2ft3_A Biglycan; proteoglycan, 99.4 9E-15 3.1E-19 141.7 0.2 128 118-260 53-183 (332)
67 2z80_A TOLL-like receptor 2, v 99.4 7.9E-14 2.7E-18 136.3 6.9 113 385-508 197-314 (353)
68 3oja_A Leucine-rich immune mol 99.4 1.2E-14 4E-19 148.0 0.5 80 445-528 190-270 (487)
69 3un9_A NLR family member X1; l 99.4 2E-12 6.9E-17 126.1 16.0 176 352-546 101-299 (372)
70 4fcg_A Uncharacterized protein 99.4 2E-14 6.8E-19 138.6 0.5 226 78-361 79-310 (328)
71 3e4g_A ATP synthase subunit S, 99.4 3E-13 1E-17 114.1 7.5 104 446-551 61-173 (176)
72 1wwl_A Monocyte differentiatio 99.4 9.2E-15 3.1E-19 140.1 -2.1 182 300-509 118-310 (312)
73 2z66_A Variable lymphocyte rec 99.4 2.8E-15 9.4E-20 143.6 -5.9 108 119-236 28-137 (306)
74 4fcg_A Uncharacterized protein 99.4 1.2E-14 4E-19 140.1 -1.9 36 409-455 275-310 (328)
75 1ozn_A Reticulon 4 receptor; N 99.4 3E-14 1E-18 134.8 -0.1 207 302-533 31-238 (285)
76 3zyi_A Leucine-rich repeat-con 99.4 2.3E-14 8E-19 145.1 -2.8 206 299-532 95-302 (452)
77 3zyj_A Leucine-rich repeat-con 99.4 2.5E-14 8.6E-19 144.3 -3.1 206 299-532 84-291 (440)
78 3oja_A Leucine-rich immune mol 99.4 8.1E-14 2.8E-18 141.8 0.4 212 297-547 52-264 (487)
79 1h6u_A Internalin H; cell adhe 99.3 9.2E-13 3.1E-17 125.7 7.6 192 301-534 39-231 (308)
80 3zyi_A Leucine-rich repeat-con 99.3 2.8E-13 9.6E-18 137.1 2.9 201 119-363 75-277 (452)
81 4glp_A Monocyte differentiatio 99.3 2.4E-12 8.1E-17 123.2 8.7 186 300-535 114-309 (310)
82 3zyj_A Leucine-rich repeat-con 99.3 2.9E-13 1E-17 136.5 2.3 226 119-398 64-291 (440)
83 1ozn_A Reticulon 4 receptor; N 99.3 1E-12 3.5E-17 124.2 4.1 202 119-362 32-235 (285)
84 4glp_A Monocyte differentiatio 99.3 7.8E-14 2.7E-18 133.6 -4.4 154 385-556 144-305 (310)
85 2z62_A TOLL-like receptor 4, v 99.3 8.4E-14 2.9E-18 131.1 -5.3 205 303-533 28-237 (276)
86 2ra8_A Uncharacterized protein 99.2 8.5E-11 2.9E-15 113.5 14.0 168 343-551 163-337 (362)
87 1h6u_A Internalin H; cell adhe 99.2 4.6E-11 1.6E-15 113.9 11.4 101 118-236 40-140 (308)
88 4ezg_A Putative uncharacterize 99.2 1.1E-11 3.9E-16 109.8 4.3 108 409-534 86-195 (197)
89 3rfs_A Internalin B, repeat mo 99.2 8.4E-12 2.9E-16 116.8 3.4 177 117-363 39-216 (272)
90 2ra8_A Uncharacterized protein 99.1 7.1E-11 2.4E-15 114.0 8.8 141 405-559 166-321 (362)
91 3rfs_A Internalin B, repeat mo 99.1 3.3E-12 1.1E-16 119.7 -0.7 59 300-363 38-96 (272)
92 1h6t_A Internalin B; cell adhe 99.1 2.5E-11 8.4E-16 114.7 4.7 172 300-535 43-215 (291)
93 1io0_A Tropomodulin; LRR prote 99.1 1.1E-09 3.8E-14 95.4 14.5 126 402-536 27-167 (185)
94 2z62_A TOLL-like receptor 4, v 99.1 7.3E-12 2.5E-16 117.7 0.1 130 119-259 28-159 (276)
95 1p9a_G Platelet glycoprotein I 99.1 1.1E-11 3.9E-16 116.9 0.4 199 302-533 9-208 (290)
96 2o6q_A Variable lymphocyte rec 99.1 6.8E-12 2.3E-16 117.4 -1.3 180 303-532 37-217 (270)
97 3e4g_A ATP synthase subunit S, 99.1 2.8E-10 9.7E-15 95.9 8.5 102 411-524 61-171 (176)
98 2o6q_A Variable lymphocyte rec 99.0 1.1E-10 3.9E-15 109.0 5.2 197 120-362 17-215 (270)
99 1m9s_A Internalin B; cell inva 99.0 9.3E-11 3.2E-15 121.7 3.6 171 300-534 40-211 (605)
100 1h6t_A Internalin B; cell adhe 99.0 1.9E-09 6.6E-14 101.6 10.7 101 118-236 45-145 (291)
101 1p9a_G Platelet glycoprotein I 99.0 1.7E-10 5.7E-15 108.9 3.3 61 300-362 145-205 (290)
102 4ezg_A Putative uncharacterize 99.0 1.5E-09 5.1E-14 96.0 9.3 103 143-258 43-145 (197)
103 2je0_A Acidic leucine-rich nuc 98.9 4E-10 1.4E-14 94.7 3.9 84 444-528 62-148 (149)
104 1m9s_A Internalin B; cell inva 98.9 2.7E-09 9.2E-14 110.7 10.0 100 118-235 42-141 (605)
105 1io0_A Tropomodulin; LRR prote 98.9 1.3E-08 4.4E-13 88.6 12.6 110 435-544 25-147 (185)
106 1xeu_A Internalin C; cellular 98.9 7.2E-10 2.4E-14 102.8 4.2 104 409-535 83-187 (263)
107 3m19_A Variable lymphocyte rec 98.9 1.6E-10 5.4E-15 106.7 -0.6 113 409-535 81-194 (251)
108 2ell_A Acidic leucine-rich nuc 98.9 3.2E-10 1.1E-14 97.5 1.3 110 409-532 47-159 (168)
109 1dce_A Protein (RAB geranylger 98.9 5.2E-12 1.8E-16 130.3 -12.1 207 300-549 346-564 (567)
110 2je0_A Acidic leucine-rich nuc 98.8 9E-10 3.1E-14 92.5 2.8 127 409-549 15-144 (149)
111 2xwt_C Thyrotropin receptor; s 98.8 6.2E-11 2.1E-15 108.7 -4.9 197 303-530 31-236 (239)
112 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 3E-09 1E-13 70.6 3.8 39 17-56 6-44 (53)
113 3m19_A Variable lymphocyte rec 98.8 1.8E-09 6.3E-14 99.5 3.8 107 119-236 35-142 (251)
114 3cvr_A Invasion plasmid antige 98.8 9.1E-10 3.1E-14 113.0 0.0 189 303-542 59-252 (571)
115 2xwt_C Thyrotropin receptor; s 98.8 7.7E-10 2.6E-14 101.3 -0.6 197 119-362 31-236 (239)
116 1xeu_A Internalin C; cellular 98.7 3.7E-08 1.3E-12 91.2 10.3 99 118-235 40-138 (263)
117 3sb4_A Hypothetical leucine ri 98.7 4.4E-09 1.5E-13 101.3 3.3 34 492-526 294-327 (329)
118 1a9n_A U2A', U2A'; complex (nu 98.7 5.9E-09 2E-13 90.2 3.8 112 409-534 40-154 (176)
119 2ell_A Acidic leucine-rich nuc 98.6 5.1E-08 1.8E-12 83.5 7.5 83 144-236 24-106 (168)
120 3e6j_A Variable lymphocyte rec 98.6 4.9E-09 1.7E-13 95.0 0.1 110 409-533 62-172 (229)
121 1pgv_A TMD-1, tropomodulin TMD 98.6 4.1E-07 1.4E-11 78.3 11.4 125 400-533 30-170 (197)
122 3sb4_A Hypothetical leucine ri 98.6 8.4E-09 2.9E-13 99.3 0.6 94 436-534 216-311 (329)
123 2xot_A Amphoterin-induced prot 98.5 2.1E-09 7.3E-14 104.9 -4.3 88 443-532 109-201 (361)
124 1ds9_A Outer arm dynein; leuci 98.5 6.5E-09 2.2E-13 91.9 -1.0 108 409-534 46-154 (198)
125 1ds9_A Outer arm dynein; leuci 98.5 8.5E-09 2.9E-13 91.1 -0.9 130 385-534 47-186 (198)
126 1dce_A Protein (RAB geranylger 98.5 9.7E-10 3.3E-14 113.4 -8.4 56 304-363 442-497 (567)
127 2v70_A SLIT-2, SLIT homolog 2 98.5 5.9E-09 2E-13 93.8 -2.4 111 409-533 55-166 (220)
128 2o6s_A Variable lymphocyte rec 98.5 3.7E-08 1.3E-12 87.9 2.4 132 169-363 27-159 (208)
129 2v9t_B SLIT homolog 2 protein 98.5 3.9E-09 1.3E-13 95.0 -4.5 110 409-532 54-164 (220)
130 3e6j_A Variable lymphocyte rec 98.5 8.3E-08 2.8E-12 86.8 4.2 129 119-259 40-169 (229)
131 2o6s_A Variable lymphocyte rec 98.4 1.3E-07 4.5E-12 84.2 4.4 129 119-258 28-157 (208)
132 1a9n_A U2A', U2A'; complex (nu 98.4 1.4E-07 4.7E-12 81.5 4.2 16 168-183 86-101 (176)
133 2v9t_B SLIT homolog 2 protein 98.4 7.8E-08 2.7E-12 86.4 1.7 130 119-259 32-162 (220)
134 1pgv_A TMD-1, tropomodulin TMD 98.4 3.4E-06 1.2E-10 72.5 11.5 129 107-236 29-168 (197)
135 3cvr_A Invasion plasmid antige 98.3 5.6E-07 1.9E-11 92.3 7.4 110 119-259 80-190 (571)
136 2v70_A SLIT-2, SLIT homolog 2 98.3 9.5E-08 3.3E-12 85.8 1.4 131 119-259 32-163 (220)
137 4ay9_X Follicle-stimulating ho 98.3 1E-08 3.5E-13 99.6 -6.9 201 303-531 30-234 (350)
138 2xot_A Amphoterin-induced prot 98.2 1.6E-07 5.3E-12 91.6 0.1 157 303-507 39-201 (361)
139 4b8c_D Glucose-repressible alc 98.2 1.2E-07 4.2E-12 101.0 -1.9 107 409-533 222-329 (727)
140 1w8a_A SLIT protein; signaling 98.1 4.4E-07 1.5E-11 79.5 1.2 110 411-533 29-139 (192)
141 2wfh_A SLIT homolog 2 protein 98.1 2.8E-07 9.5E-12 80.8 -0.4 107 411-532 31-138 (193)
142 4ay9_X Follicle-stimulating ho 98.1 1.5E-07 5.2E-12 91.3 -2.4 58 299-361 198-255 (350)
143 2o6r_A Variable lymphocyte rec 98.1 1.1E-06 3.9E-11 75.8 2.6 119 410-542 27-148 (177)
144 4b8c_D Glucose-repressible alc 98.0 5.7E-07 1.9E-11 95.8 -0.2 62 299-363 266-327 (727)
145 1w8a_A SLIT protein; signaling 97.9 3.4E-06 1.2E-10 73.7 3.1 109 119-237 29-138 (192)
146 2o6r_A Variable lymphocyte rec 97.9 6.9E-06 2.4E-10 70.8 4.2 109 118-237 27-136 (177)
147 2wfh_A SLIT homolog 2 protein 97.9 9.6E-06 3.3E-10 70.9 5.1 106 119-236 31-137 (193)
148 4fs7_A Uncharacterized protein 97.8 9.1E-07 3.1E-11 87.4 -2.8 78 442-525 316-393 (394)
149 3l2o_B F-box only protein 4; s 97.8 9.3E-06 3.2E-10 73.2 3.1 37 19-56 4-40 (312)
150 2e31_A FBS1, F-box only protei 97.8 9E-06 3.1E-10 74.4 2.5 38 18-56 49-87 (297)
151 3rw6_A Nuclear RNA export fact 97.7 3E-05 1E-09 70.6 5.5 89 465-557 165-261 (267)
152 2r9u_A Variable lymphocyte rec 97.6 9.5E-06 3.2E-10 69.5 0.2 84 446-533 33-118 (174)
153 3g39_A Variable lymphocyte rec 97.6 9.8E-06 3.4E-10 69.2 0.2 85 446-533 30-115 (170)
154 4fdw_A Leucine rich hypothetic 97.5 2.7E-06 9.1E-11 83.7 -5.7 15 300-314 177-191 (401)
155 3rw6_A Nuclear RNA export fact 97.3 0.00069 2.4E-08 61.6 8.9 31 226-256 221-258 (267)
156 4fs7_A Uncharacterized protein 97.3 1.1E-05 3.8E-10 79.5 -3.3 161 302-500 229-393 (394)
157 3g39_A Variable lymphocyte rec 97.3 0.00013 4.5E-09 62.0 3.3 99 144-252 30-135 (170)
158 2r9u_A Variable lymphocyte rec 97.3 0.00013 4.3E-09 62.4 3.0 62 167-236 54-116 (174)
159 4fdw_A Leucine rich hypothetic 97.2 2.4E-05 8.1E-10 76.9 -1.9 85 442-531 296-381 (401)
160 3v7d_B Cell division control p 97.2 9.8E-05 3.4E-09 74.5 2.5 41 16-57 11-51 (464)
161 4gt6_A Cell surface protein; l 97.1 3.9E-05 1.3E-09 75.6 -1.7 78 442-531 307-389 (394)
162 1p22_A F-BOX/WD-repeat protein 97.0 0.00025 8.6E-09 70.8 2.5 40 16-56 7-50 (435)
163 2ovr_B FBW7, F-BOX/WD repeat p 96.8 0.00045 1.6E-08 69.2 3.1 40 16-56 15-54 (445)
164 2ifg_A High affinity nerve gro 96.5 0.00027 9.3E-09 68.2 -1.3 62 468-532 54-115 (347)
165 4gt6_A Cell surface protein; l 96.4 0.0002 6.7E-09 70.5 -2.8 57 442-506 330-389 (394)
166 2ifg_A High affinity nerve gro 96.1 0.002 6.8E-08 62.0 2.2 64 118-184 30-94 (347)
167 4h09_A Hypothetical leucine ri 84.0 0.15 5E-06 49.5 -1.0 83 442-530 259-343 (379)
168 3rfe_A Platelet glycoprotein I 78.9 0.67 2.3E-05 36.6 1.3 36 496-532 32-67 (130)
169 4h09_A Hypothetical leucine ri 76.4 1.3 4.6E-05 42.5 3.0 124 117-258 215-342 (379)
170 3rfe_A Platelet glycoprotein I 70.9 1.4 4.7E-05 34.8 1.2 38 469-507 30-67 (130)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=5.7e-61 Score=507.93 Aligned_cols=567 Identities=58% Similarity=1.049 Sum_probs=500.1
Q ss_pred hhhcCCCHHHHHHHHhccCChhHHHHHHHHhHHHHHHHhhhccEEEeccccCCChhHHHhhCCCccEEEecCCCCcccCc
Q 007916 18 AVTASFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAERWSRTQVFIGNCYSVSPEILTRRFPNIRSVTLKGKPRFSDFN 97 (585)
Q Consensus 18 ~~i~~LP~eil~~If~~L~~~~d~~~~~~Vck~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~l~~~~~~~~~~ 97 (585)
+.+..||+||+.+||+||+..+|+.++++|||+|+++..+.+..+.+..++...+..++.++++++.+++.+++.+.+++
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 83 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFN 83 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGT
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcc
Confidence 67899999999999999965899999999999999997788999999999999999999999999999999999998899
Q ss_pred cCCCCCCCchHHHHHHHHhhCCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEc
Q 007916 98 LVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDI 177 (585)
Q Consensus 98 ~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L 177 (585)
+.+..|+....+|+..+...+++|++|+++++.+++..+..+...+++|++|++.+|..++..++..+...+++|++|++
T Consensus 84 l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L 163 (594)
T 2p1m_B 84 LVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL 163 (594)
T ss_dssp CSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEEC
T ss_pred cccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeC
Confidence 99999999999999999999999999999999999999999987799999999999977878888888889999999999
Q ss_pred ccCCCCccccccccccccCCCCcCEEEeccCCCCCChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhCCccccccCc
Q 007916 178 QENGIEDSSGSWLSCFPESFTSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTG 257 (585)
Q Consensus 178 ~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 257 (585)
++|.+++.+..++..++..+++|++|+++++...++.+.+..+...+++|++|++++|....+++..+..+++|++|.+.
T Consensus 164 ~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 164 RESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp TTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred cCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 99998888877788888899999999999887568889999988899999999999998888899999999999999988
Q ss_pred ccccccCCCchhhHHHHhhcCCcccccccccccCcCCHHHHhhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecc
Q 007916 258 SFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLD 337 (585)
Q Consensus 258 ~~~~~~~~~~~~~l~~~~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~ 337 (585)
.+........+..+...+..|++|+.+++.+......++.....+++|++|++++|.+++..+..++..+++|++|++.+
T Consensus 244 ~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~ 323 (594)
T 2p1m_B 244 GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD 323 (594)
T ss_dssp BCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEG
T ss_pred cccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcC
Confidence 77554444456667777788999999976666666777777778999999999999988888888889999999999999
Q ss_pred cCChhhHHHHHhcCCCCcEEEecCCCCC-chhhccccChhhHHHHHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceE
Q 007916 338 TVEDKGLEAVGSNCPLLEELRVFPADPF-DEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHF 416 (585)
Q Consensus 338 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L 416 (585)
+..+.++..+...+++|++|++.++++. ...+.. +++.++..+..++++|++|.++|+.+++..+..++..+++|++|
T Consensus 324 ~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~-l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L 402 (594)
T 2p1m_B 324 YIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA-LTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF 402 (594)
T ss_dssp GGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSC-CCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEE
T ss_pred ccCHHHHHHHHHhCCCCCEEEEecCcccccccCCC-CCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCccee
Confidence 8888888888888999999999653211 001344 88999999988899999999999999999999998889999999
Q ss_pred EeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEcccCCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCC
Q 007916 417 RLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPK 496 (585)
Q Consensus 417 ~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~ 496 (585)
+++.+....|+.+++.+.++++..++..|++|+.|++++.+++.++..++..+++|+.|++++|.+++.++..++.+|++
T Consensus 403 ~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 482 (594)
T 2p1m_B 403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDS 482 (594)
T ss_dssp EEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTT
T ss_pred EeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCC
Confidence 99954322367788777788999999999999999998899999999999779999999999999999999998899999
Q ss_pred ccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccCHHHHHHHHhhCCCCcEEEeccCCC-----CCCccceeeeeecc
Q 007916 497 LRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMNACRRLAKQMPRLNVEVMKEDGS-----DDSQADKVYIYRTV 571 (585)
Q Consensus 497 L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it~~~~~~~~~~~p~l~~~~~~~~~~-----~~~~~~~~~~~~~~ 571 (585)
|++|++++|++++.++...+.++++|++|++++|++++.|++.++..+|+++++++++.+. +.+.++++++|++.
T Consensus 483 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (594)
T 2p1m_B 483 LRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVFIYRTV 562 (594)
T ss_dssp CCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGGGSCTTSBCSEEEEEECS
T ss_pred cCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCccccccccchhhhhhhhhcc
Confidence 9999999999999888888888999999999999999999999999999999999987653 45677899999999
Q ss_pred cCCCCCCCCCCCCC
Q 007916 572 AGPRRDAPPSVLTL 585 (585)
Q Consensus 572 ~~~~~~~~~~~~~~ 585 (585)
+|||.|+|++|.++
T Consensus 563 ~~~~~~~p~~~~~l 576 (594)
T 2p1m_B 563 AGPRFDMPGFVWNM 576 (594)
T ss_dssp SCSCSCCCTTEEEC
T ss_pred CCCCCCCCCceEec
Confidence 99999999998764
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=3.4e-59 Score=493.98 Aligned_cols=557 Identities=32% Similarity=0.591 Sum_probs=481.7
Q ss_pred cCCCHHHHHHHHhccCChhHHHHHHHHhHHHHHHHhhhccEEEeccccCCChhHHHhhCCCccEEEecCCCCcccCccCC
Q 007916 21 ASFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAERWSRTQVFIGNCYSVSPEILTRRFPNIRSVTLKGKPRFSDFNLVP 100 (585)
Q Consensus 21 ~~LP~eil~~If~~L~~~~d~~~~~~Vck~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~l~~~~~~~~~~~~~ 100 (585)
..||+|||.+||+||+..+|+.++++|||+|+.+..+.+..+.+..++...+..++.++++++.|++++|+.+.+++.++
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 93 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIP 93 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSC
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhccccc
Confidence 47999999999999955899999999999999998888999999988888889999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhhCCCCcEEEecccccChHHHHHHHhhCCC-ccEEEecCCCCCCHHHHHHHHHhCCCCCEEEccc
Q 007916 101 PNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFLASNFPN-FKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQE 179 (585)
Q Consensus 101 ~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~l~~i~~~~~~-L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 179 (585)
..|+....+|+..+...+++|++|+|+++.+++..+..+...+++ |++|++.+|..++..++..+...|++|++|+|++
T Consensus 94 ~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 173 (592)
T 3ogk_B 94 ENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEE 173 (592)
T ss_dssp TTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTT
T ss_pred ccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcc
Confidence 999999999999999999999999999999999999988887777 9999999998777888888888999999999999
Q ss_pred CCCCccccccccccccCCCCcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhCCccccccCcc
Q 007916 180 NGIEDSSGSWLSCFPESFTSLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGS 258 (585)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 258 (585)
|.+++.+..++..++..+++|++|+++++... ++...+..++..+++|+.|++++|. ...++..+..+++|++|.+..
T Consensus 174 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 174 SSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp CEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECB
T ss_pred ccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccc
Confidence 99888777777777788999999999988754 5678888889999999999999965 455788899999999999986
Q ss_pred cccccCCCchhhHHHHhhcCCcccccccccccCcCCHHHHhhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEeccc
Q 007916 259 FLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDT 338 (585)
Q Consensus 259 ~~~~~~~~~~~~l~~~~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~ 338 (585)
+..... ..........+++|+.+.. +......++..+..+++|++|++++|.+++..+..++..+++|+.|++.++
T Consensus 253 ~~~~~~---~~~~~~~l~~~~~L~~L~l-~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~ 328 (592)
T 3ogk_B 253 LNEDIG---MPEKYMNLVFPRKLCRLGL-SYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV 328 (592)
T ss_dssp CCCCTT---CTTSSSCCCCCTTCCEEEE-TTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred cccccc---hHHHHHHhhccccccccCc-cccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc
Confidence 433311 1112223344566666642 224556677778889999999999999888888888899999999999988
Q ss_pred CChhhHHHHHhcCCCCcEEEecC--CCCCc-hhhccccChhhHHHHHhcCccchhhhccCCCCCHHHHHHHHHhCCCCce
Q 007916 339 VEDKGLEAVGSNCPLLEELRVFP--ADPFD-EEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTH 415 (585)
Q Consensus 339 ~~~~~l~~~~~~~~~L~~L~l~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~ 415 (585)
..+.++..+...+++|++|++.+ ..+.. ..+.. +++.++..+...+++|++|.++|+.+++..+..++..+++|++
T Consensus 329 ~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~ 407 (592)
T 3ogk_B 329 IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL-VSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCD 407 (592)
T ss_dssp GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC-CCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCE
T ss_pred cCHHHHHHHHHhCCCCCEEEeecCccccccccccCc-cCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcE
Confidence 88899999999999999999994 00000 00223 8888898888889999999889999999999999988999999
Q ss_pred EEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEcc---cCCChhHHHHHhhcCccccceecccccCChHHHHHHHh
Q 007916 416 FRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVS---GLLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLE 492 (585)
Q Consensus 416 L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~---~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~ 492 (585)
|+++++.. ++.+++.+.++++..++.+|++|+.|+++ +.+++..+..++..+++|+.|++++|++++.++..++.
T Consensus 408 L~l~~~~~--~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 485 (592)
T 3ogk_B 408 FRLVLLDR--EERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSR 485 (592)
T ss_dssp EEEEECSC--CSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHT
T ss_pred EEEeecCC--CccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHh
Confidence 99987653 77888777778999999999999999995 36899999999988999999999999999999999999
Q ss_pred cCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccCHHHHHHHHhhCCCCcEEEeccC----------CCCCCcc
Q 007916 493 GCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMNACRRLAKQMPRLNVEVMKED----------GSDDSQA 562 (585)
Q Consensus 493 ~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it~~~~~~~~~~~p~l~~~~~~~~----------~~~~~~~ 562 (585)
+|++|++|++++|++++.++...+..+++|++|+|++|++++.|++.+.+.+|.+++++++.. ..+.+.+
T Consensus 486 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (592)
T 3ogk_B 486 GCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHP 565 (592)
T ss_dssp CCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC---------------CC
T ss_pred cCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCccccccccccCCcCCcch
Confidence 999999999999999999898888999999999999999999999999999999999999874 4566778
Q ss_pred ceeeeeecccCCCCCCCCCCCCC
Q 007916 563 DKVYIYRTVAGPRRDAPPSVLTL 585 (585)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~ 585 (585)
++++.|++.+||++|+|++|-++
T Consensus 566 ~~~~~~~~~~g~~~~~p~~~~~l 588 (592)
T 3ogk_B 566 AHILAYYSLAGQRTDCPTTVRVL 588 (592)
T ss_dssp CEEEEEECTTCSCSCCCTTCEEC
T ss_pred hheEeeeecCCCccCCCCCeEec
Confidence 99999999999999999999764
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=3.3e-31 Score=279.77 Aligned_cols=417 Identities=16% Similarity=0.193 Sum_probs=332.5
Q ss_pred HHHHHhhCCCCcEEEeccc--------------ccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCC-CCEE
Q 007916 111 LVAFAAKYPFLEELRLKRM--------------AVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKN-LTEL 175 (585)
Q Consensus 111 l~~l~~~~~~L~~L~l~~~--------------~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~-L~~L 175 (585)
...+..++++|++|+++++ ......+..+...+++|++|++++|. +++..+..+...+++ |++|
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEE
Confidence 4567778999999999764 12344577777779999999999974 777777777665666 9999
Q ss_pred EcccCC-CCccccccccccccCCCCcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcch----hHHHHHHHhCC
Q 007916 176 DIQENG-IEDSSGSWLSCFPESFTSLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSISL----EQLQRLLVRAP 249 (585)
Q Consensus 176 ~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~ 249 (585)
++++|. +++.+ +..+...+++|++|+++++... ...+.+..+...+++|++|+++++... ..++..+..++
T Consensus 144 ~L~~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~ 220 (592)
T 3ogk_B 144 KLDKCSGFTTDG---LLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR 220 (592)
T ss_dssp EEESCEEEEHHH---HHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCT
T ss_pred ECcCCCCcCHHH---HHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCC
Confidence 999885 33322 4445568999999999988521 223336777889999999999987653 45788889999
Q ss_pred ccccccCcccccccCCCchhhHHHHhhcCCcccccccccccCc---CCHHHHhhcCCCCcEEEecccccCChhHHHHHhc
Q 007916 250 QLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVP---LYLPALYNSCANLTFLNLSYTALQSGEFAKLVVH 326 (585)
Q Consensus 250 ~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~l~~~~~~~~---~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~ 326 (585)
+|++|++..+ ....+......+++|+.+........ ......+..+++|+.+++.++. ...++.++..
T Consensus 221 ~L~~L~L~~~-------~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~l~~~~~~ 291 (592)
T 3ogk_B 221 SLVSVKVGDF-------EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG--PNEMPILFPF 291 (592)
T ss_dssp TCCEEECSSC-------BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC--TTTGGGGGGG
T ss_pred CCcEEeccCc-------cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc--hhHHHHHHhh
Confidence 9999999985 33445667777888988873211111 2222334667899999998753 3446667788
Q ss_pred CCCCcEEEeccc-CChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHHHHHhcCccchhhhcc-----------
Q 007916 327 CPRLRRLWVLDT-VEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYF----------- 394 (585)
Q Consensus 327 ~~~L~~L~l~~~-~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~----------- 394 (585)
+++|++|++.++ +.+..+..++..+++|+.|++.++ +.+.++..+...+++|++|++.
T Consensus 292 ~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~----------~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~ 361 (592)
T 3ogk_B 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV----------IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361 (592)
T ss_dssp GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG----------GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSST
T ss_pred cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc----------cCHHHHHHHHHhCCCCCEEEeecCccccccccc
Confidence 999999999987 566777777899999999999953 7888888888889999999776
Q ss_pred CCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEcc----c-CCCh----hHHHHH
Q 007916 395 CRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVS----G-LLTD----LTFEYI 465 (585)
Q Consensus 395 ~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~----~-~~~~----~~~~~l 465 (585)
|+.+++..+..+...|++|++|.+. ++.++ +.++..+...+++|+.|+++ . .+++ +++..+
T Consensus 362 ~~~~~~~~~~~l~~~~~~L~~L~l~------~~~l~----~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~ 431 (592)
T 3ogk_B 362 EGLVSQRGLIALAQGCQELEYMAVY------VSDIT----NESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL 431 (592)
T ss_dssp TCCCCHHHHHHHHHHCTTCSEEEEE------ESCCC----HHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH
T ss_pred cCccCHHHHHHHHhhCccCeEEEee------cCCcc----HHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH
Confidence 7899999999988899999999996 55678 78888888889999999995 2 5665 467777
Q ss_pred hhcCccccceeccccc--CChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccCHHHHHHHHhh
Q 007916 466 GKYAKNLETLSVAFAG--RSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMNACRRLAKQ 543 (585)
Q Consensus 466 ~~~~~~L~~L~l~~~~--i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it~~~~~~~~~~ 543 (585)
...+++|+.|++++|. +++.++..+...+++|+.|++++|.+++.+++..+..|++|++|+|++|++++.++..+...
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 7789999999998764 89999999988899999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEeccCCCCCC
Q 007916 544 MPRLNVEVMKEDGSDDS 560 (585)
Q Consensus 544 ~p~l~~~~~~~~~~~~~ 560 (585)
+|+++.-.+......+.
T Consensus 512 l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 512 LPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CSSCCEEEEESCBCCTT
T ss_pred cCccCeeECcCCcCCHH
Confidence 99988776666654433
No 4
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.98 E-value=3.6e-30 Score=272.06 Aligned_cols=412 Identities=20% Similarity=0.242 Sum_probs=328.3
Q ss_pred HHHhhCCCccEEEecCCCCcccCccCCCCCCCchHHHHHHHHhhCCCCcEEEeccc-ccChHHHHHHHhhCCCccEEEec
Q 007916 74 ILTRRFPNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRM-AVSDESLEFLASNFPNFKLLSLL 152 (585)
Q Consensus 74 ~l~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~-~l~~~~l~~i~~~~~~L~~L~l~ 152 (585)
.+...+++|+.|+++++. +.+ ..+..+...+++|++|++.+| .+++..+..+...+++|++|+++
T Consensus 99 ~l~~~~~~L~~L~L~~~~-~~~-------------~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~ 164 (594)
T 2p1m_B 99 AMSSSYTWLEEIRLKRMV-VTD-------------DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLR 164 (594)
T ss_dssp HHHHHCTTCCEEEEESCB-CCH-------------HHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECT
T ss_pred HHHHhCCCCCeEEeeCcE-EcH-------------HHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCc
Confidence 456789999999999874 322 225566667999999999999 78888888888889999999999
Q ss_pred CCC--CCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCCCcCEEEeccCCCCCChHHHHHHHhcCCCCcEE
Q 007916 153 SCD--GFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSEVNTDALERLVSRCKSLKVL 230 (585)
Q Consensus 153 ~~~--~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L 230 (585)
+|. ......+..+...+++|++|++++|. .......+..+...+++|++|++.++ .....+..++..+++|++|
T Consensus 165 ~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~---~~~~~l~~~~~~~~~L~~L 240 (594)
T 2p1m_B 165 ESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRA---VPLEKLATLLQRAPQLEEL 240 (594)
T ss_dssp TCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTT---SCHHHHHHHHHHCTTCSEE
T ss_pred CCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCC---CcHHHHHHHHhcCCcceEc
Confidence 876 12233455555688999999999986 22222225555567899999999987 3455588889999999999
Q ss_pred EecCCcc------hhHHHHHHHhCCccccc-cCcccccccCCCchhhHHHHhhcCCccccccc-ccccCcCCHHHHhhcC
Q 007916 231 KVNKSIS------LEQLQRLLVRAPQLEEL-GTGSFLQDLTARPYADLESAFNNCKNIHTLSG-LWEAVPLYLPALYNSC 302 (585)
Q Consensus 231 ~l~~~~~------~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~l~~~~~~~~~L~~l~~-~~~~~~~~l~~~~~~~ 302 (585)
+++.+.. +..++..+..+++|+.+ .+... ....+......+++|+.|.. .....+..+..++..+
T Consensus 241 ~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-------~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~ 313 (594)
T 2p1m_B 241 GTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-------VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC 313 (594)
T ss_dssp ECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC-------CGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC
T ss_pred ccccccCccchhhHHHHHHHHhcCCCcccccCCccc-------chhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC
Confidence 9877642 33466678899999998 44332 22344455557788998882 2224445566667789
Q ss_pred CCCcEEEecccccCChhHHHHHhcCCCCcEEEecc----------cCChhhHHHHHhcCCCCcEEEecCCCCCchhhccc
Q 007916 303 ANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLD----------TVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHG 372 (585)
Q Consensus 303 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~----------~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 372 (585)
++|++|++.+| +.+..+..+...+++|++|++.+ .+.+.++..+...+++|+.|.+..+.
T Consensus 314 ~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~--------- 383 (594)
T 2p1m_B 314 PKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQ--------- 383 (594)
T ss_dssp TTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESC---------
T ss_pred CCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCC---------
Confidence 99999999998 66777888888899999999932 36778888888889999999776543
Q ss_pred cChhhHHHHHhcCccchhhhcc------CCCCC----HHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHH
Q 007916 373 VTEEGFVAVSFGCRRLHYVLYF------CRQMT----NAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVV 442 (585)
Q Consensus 373 ~~~~~~~~~~~~~~~L~~L~~~------~~~l~----~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~ 442 (585)
+++.++..+...+++|+.|.+. |+.++ +..+..+...|++|++|++++ .++ +.++..+.
T Consensus 384 l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-------~l~----~~~~~~l~ 452 (594)
T 2p1m_B 384 MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-------LLT----DKVFEYIG 452 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-------SCC----HHHHHHHH
T ss_pred cCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-------ccc----HHHHHHHH
Confidence 8888888888889999999554 58888 788888888999999999964 466 78888888
Q ss_pred hcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcC
Q 007916 443 KTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYES 521 (585)
Q Consensus 443 ~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~ 521 (585)
..+++|+.|++++ .+++.++..++..+++|+.|++++|.+++.++..++..+++|+.|++++|++++.++..+...+|+
T Consensus 453 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~ 532 (594)
T 2p1m_B 453 TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPK 532 (594)
T ss_dssp HHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTT
T ss_pred HhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCC
Confidence 8899999999988 889999999877899999999999999999998888889999999999999999988887789999
Q ss_pred CcEEEccccc
Q 007916 522 MRSLWMSACN 531 (585)
Q Consensus 522 L~~L~l~~~~ 531 (585)
|+...+..+.
T Consensus 533 l~i~~~~~~~ 542 (594)
T 2p1m_B 533 LNVEVIDERG 542 (594)
T ss_dssp EEEEEECSSS
T ss_pred CEEEEecCCC
Confidence 9887777664
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=5.3e-29 Score=254.43 Aligned_cols=394 Identities=17% Similarity=0.187 Sum_probs=279.4
Q ss_pred HHHHHhhCCCCcEEEecccccChHHHHHHH---hhCCCccEEEecCCCCCCHHHHHHHHHhCC----CCCEEEcccCCCC
Q 007916 111 LVAFAAKYPFLEELRLKRMAVSDESLEFLA---SNFPNFKLLSLLSCDGFSTDGLAAIATHCK----NLTELDIQENGIE 183 (585)
Q Consensus 111 l~~l~~~~~~L~~L~l~~~~l~~~~l~~i~---~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~----~L~~L~L~~~~~~ 183 (585)
+..+...+++|++|++++|.+++.....+. ..+++|++|+++++. +++..+..+...++ +|++|++++|.++
T Consensus 20 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 98 (461)
T 1z7x_W 20 WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 98 (461)
T ss_dssp HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSCCB
T ss_pred HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCCCC
Confidence 444556778888888888888876544443 336888888888855 65666666666666 6888888888887
Q ss_pred ccccccccccccCCCCcCEEEeccCCCCCChHHHHHHHhc----CCCCcEEEecCCcchh----HHHHHHHhCCcccccc
Q 007916 184 DSSGSWLSCFPESFTSLEVLNFANLTSEVNTDALERLVSR----CKSLKVLKVNKSISLE----QLQRLLVRAPQLEELG 255 (585)
Q Consensus 184 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~----~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~ 255 (585)
+.+...+......+++|++|+++++. +++.++..+... .++|++|++++|.... .++..+..+++|++|+
T Consensus 99 ~~~~~~l~~~l~~~~~L~~L~Ls~n~--i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 176 (461)
T 1z7x_W 99 GAGCGVLSSTLRTLPTLQELHLSDNL--LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176 (461)
T ss_dssp GGGHHHHHHHTTSCTTCCEEECCSSB--CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHHHccCCceeEEECCCCc--CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence 66544444455678888888888775 666555554432 4578888888875333 2566677788888888
Q ss_pred CcccccccCCCchhhHHHHhhcCCcccccccccccCcCCHHH-HhhcCCCCcEEEecccccCChh---HHHHHhcCCCCc
Q 007916 256 TGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPA-LYNSCANLTFLNLSYTALQSGE---FAKLVVHCPRLR 331 (585)
Q Consensus 256 l~~~~~~~~~~~~~~l~~~~~~~~~L~~l~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~---l~~~~~~~~~L~ 331 (585)
+.++.... .....+.. +....++|++|++++|.++... +...+..+++|+
T Consensus 177 L~~n~i~~--------------------------~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 230 (461)
T 1z7x_W 177 VSNNDINE--------------------------AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230 (461)
T ss_dssp CCSSBCHH--------------------------HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred CcCCCcch--------------------------HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc
Confidence 87642110 00001111 1123568999999999877654 455567889999
Q ss_pred EEEeccc-CChhhHHHHH----hcCCCCcEEEecCCCCCchhhccccChhhHHHHH---hcCccchhhhccCCCCCHHHH
Q 007916 332 RLWVLDT-VEDKGLEAVG----SNCPLLEELRVFPADPFDEEIIHGVTEEGFVAVS---FGCRRLHYVLYFCRQMTNAAV 403 (585)
Q Consensus 332 ~L~l~~~-~~~~~l~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~~L~~~~~~l~~~~l 403 (585)
+|+++++ +.+.++..+. ..+++|++|++++|. +++.+...+. ..+++|++|+++.+.+++...
T Consensus 231 ~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~---------l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG---------ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC---------CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred EEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC---------CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 9999876 4444444433 357899999999875 7777654443 347889999888899988877
Q ss_pred HHHHHh----CCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhc----Cccccc
Q 007916 404 ATIVQN----CPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKY----AKNLET 474 (585)
Q Consensus 404 ~~l~~~----~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~----~~~L~~ 474 (585)
..+... .++|++|++++|. +++.. ...+...+..+++|++|++++ .+++.+...++.. .++|+.
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~------l~~~~-~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 374 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCS------FTAAC-CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV 374 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSC------CBGGG-HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred HHHHHHhccCCccceeeEcCCCC------CchHH-HHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEE
Confidence 777654 3699999998764 44110 123555667789999999988 7888887777643 679999
Q ss_pred eecccccCChHHHHHH---HhcCCCccEEEecCCCCChHHHHHHHhcCc----CCcEEEcccccc---CHHHHHHHHhhC
Q 007916 475 LSVAFAGRSDRGMQCV---LEGCPKLRKLEIRDCPFGNEALLSGLEKYE----SMRSLWMSACNV---TMNACRRLAKQM 544 (585)
Q Consensus 475 L~l~~~~i~~~~l~~l---~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~----~L~~L~l~~~~i---t~~~~~~~~~~~ 544 (585)
|++++|.++++|+..+ +..+++|++|++++|++++.++..+...++ +|+.|.+.++.+ ..+.++.+.+..
T Consensus 375 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~ 454 (461)
T 1z7x_W 375 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 454 (461)
T ss_dssp EECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHC
T ss_pred EECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhccC
Confidence 9999999998765554 456899999999999998888877776553 599998888764 456788888889
Q ss_pred CCCcE
Q 007916 545 PRLNV 549 (585)
Q Consensus 545 p~l~~ 549 (585)
|+++|
T Consensus 455 p~l~i 459 (461)
T 1z7x_W 455 PSLRV 459 (461)
T ss_dssp TTSEE
T ss_pred CCcEe
Confidence 99866
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=9.9e-29 Score=252.43 Aligned_cols=380 Identities=16% Similarity=0.173 Sum_probs=286.1
Q ss_pred CCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHH---HHHHHHHhCCCCCEEEcccCCCCccccccccc-cc
Q 007916 119 PFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTD---GLAAIATHCKNLTELDIQENGIEDSSGSWLSC-FP 194 (585)
Q Consensus 119 ~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~---~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~-~~ 194 (585)
++|++|+++++.+++..+..+...+++|++|++++|. ++.. .++..+..+++|++|++++|.+++.+...+.. +.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 5789999999999998888877779999999999987 6655 44556678899999999999988765333322 22
Q ss_pred cCCCCcCEEEeccCCCCCChH---HHHHHHhcCCCCcEEEecCCcchhHHHHHHH-----hCCccccccCcccccccCCC
Q 007916 195 ESFTSLEVLNFANLTSEVNTD---ALERLVSRCKSLKVLKVNKSISLEQLQRLLV-----RAPQLEELGTGSFLQDLTAR 266 (585)
Q Consensus 195 ~~~~~L~~L~l~~~~~~~~~~---~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~ 266 (585)
...++|++|+++++. +++. .+...+..+++|++|++++|.........+. ..++|++|++..+...
T Consensus 82 ~~~~~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~---- 155 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCC--LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS---- 155 (461)
T ss_dssp STTCCCCEEECTTSC--CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB----
T ss_pred hCCCceeEEEccCCC--CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCC----
Confidence 222379999999986 5653 4455577889999999999874433233222 2567999988765221
Q ss_pred chhhHHHHhhcCCcccccccccccCcCCHHHHhhcCCCCcEEEecccccCChhHHHHHh----cCCCCcEEEeccc-CCh
Q 007916 267 PYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVV----HCPRLRRLWVLDT-VED 341 (585)
Q Consensus 267 ~~~~l~~~~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~----~~~~L~~L~l~~~-~~~ 341 (585)
......++..+..+++|++|++++|.+.......+.. ..++|++|+++++ +.+
T Consensus 156 ----------------------~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 156 ----------------------AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp ----------------------GGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred ----------------------HHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 0111224455667899999999999977665555543 4569999999987 333
Q ss_pred hh---HHHHHhcCCCCcEEEecCCCCCchhhccccChhhHHHHHh----cCccchhhhccCCCCCHHHHHHHH---HhCC
Q 007916 342 KG---LEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAVSF----GCRRLHYVLYFCRQMTNAAVATIV---QNCP 411 (585)
Q Consensus 342 ~~---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~L~~L~~~~~~l~~~~l~~l~---~~~~ 411 (585)
.+ +...+..+++|++|++++|. +++.++..+.. .+++|++|+++.+.+++.....+. ..++
T Consensus 214 ~~~~~l~~~l~~~~~L~~L~Ls~n~---------l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 284 (461)
T 1z7x_W 214 DNCRDLCGIVASKASLRELALGSNK---------LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284 (461)
T ss_dssp THHHHHHHHHHHCTTCCEEECCSSB---------CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCccEEeccCCc---------CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC
Confidence 33 56666789999999999975 77777665543 478999999988999988755444 3689
Q ss_pred CCceEEeeccCCCCCCCCCCCcchhhHHHHHh----cCCCCcEEEccc-CCChhHHHHHh---hcCccccceecccccCC
Q 007916 412 NFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVK----TCSKLQRLSVSG-LLTDLTFEYIG---KYAKNLETLSVAFAGRS 483 (585)
Q Consensus 412 ~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~----~~~~L~~L~l~~-~~~~~~~~~l~---~~~~~L~~L~l~~~~i~ 483 (585)
+|++|++++| .++ +.+...+.. ..++|++|++++ .+++.+...+. ..+++|+.|++++|.++
T Consensus 285 ~L~~L~Ls~n------~i~----~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 285 SLKELSLAGN------ELG----DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp TCCEEECTTC------CCH----HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred CcceEECCCC------CCc----hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 9999999965 355 444444433 336999999998 78877655554 36799999999999999
Q ss_pred hHHHHHHHhc----CCCccEEEecCCCCChHH---HHHHHhcCcCCcEEEccccccCHHHHHHHHhhCCC
Q 007916 484 DRGMQCVLEG----CPKLRKLEIRDCPFGNEA---LLSGLEKYESMRSLWMSACNVTMNACRRLAKQMPR 546 (585)
Q Consensus 484 ~~~l~~l~~~----~~~L~~L~l~~~~~~~~~---l~~~~~~l~~L~~L~l~~~~it~~~~~~~~~~~p~ 546 (585)
+.++..+... +++|++|++++|.+++.+ ++..+..+++|++|++++|++++.|+..+...+|+
T Consensus 355 ~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~ 424 (461)
T 1z7x_W 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 424 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTS
T ss_pred cccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhcc
Confidence 9888766543 679999999999998743 45556789999999999999999999999988775
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.92 E-value=5.6e-24 Score=207.53 Aligned_cols=215 Identities=20% Similarity=0.218 Sum_probs=124.0
Q ss_pred hhhcCCCHHHHHHHHhccCChhHHHHHHHHhHHHHHHHh--hhccEEEeccccCCChhHHHhhC--CCccEEEecCCCCc
Q 007916 18 AVTASFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAER--WSRTQVFIGNCYSVSPEILTRRF--PNIRSVTLKGKPRF 93 (585)
Q Consensus 18 ~~i~~LP~eil~~If~~L~~~~d~~~~~~Vck~w~~~~~--~~~~~~~~~~~~~~~~~~l~~~~--~~l~~l~l~~~~~~ 93 (585)
..+..||+|++.+||+||+ .+|+.++++|||+|++++. ..|+.+.+....-. ...+... ++++.+++.++.-.
T Consensus 7 ~~~~~LP~eil~~If~~L~-~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~ 83 (336)
T 2ast_B 7 VSWDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMD 83 (336)
T ss_dssp CCSSSSCHHHHHHHHTTSC-HHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEEC
T ss_pred CChhhCCHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhcCchhheeeccccccCC--HHHHHhhhhccceEEEcCCcccc
Confidence 5689999999999999995 8899999999999999874 33666666543221 2333333 56666666654211
Q ss_pred ccCccCCCCCCCchHHHHHHHHhhCCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCC
Q 007916 94 SDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLT 173 (585)
Q Consensus 94 ~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~ 173 (585)
.. .+ . ...+++|++|+++++.+++..+..+...+++|++|++++|. ++......+ ..+++|+
T Consensus 84 -~~--~~-~------------~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l-~~~~~L~ 145 (336)
T 2ast_B 84 -QP--LA-E------------HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTL-AKNSNLV 145 (336)
T ss_dssp -SC--CC-S------------CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHH-TTCTTCS
T ss_pred -cc--ch-h------------hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHHH-hcCCCCC
Confidence 00 00 0 01356666777766666665555555556667777766653 444333333 3566666
Q ss_pred EEEcccC-CCCccccccccccccCCCCcCEEEeccC-CCCCChHHHHHHHhcCC-CCcEEEecCCc-ch--hHHHHHHHh
Q 007916 174 ELDIQEN-GIEDSSGSWLSCFPESFTSLEVLNFANL-TSEVNTDALERLVSRCK-SLKVLKVNKSI-SL--EQLQRLLVR 247 (585)
Q Consensus 174 ~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~l~~~-~~~~~~~~l~~l~~~~~-~L~~L~l~~~~-~~--~~~~~~~~~ 247 (585)
+|++++| .+++.. +......+++|++|+++++ . +++.++...+..++ +|++|++++|. .+ ..++..+..
T Consensus 146 ~L~L~~~~~l~~~~---l~~~~~~~~~L~~L~l~~~~~--l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~ 220 (336)
T 2ast_B 146 RLNLSGCSGFSEFA---LQTLLSSCSRLDELNLSWCFD--FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 220 (336)
T ss_dssp EEECTTCBSCCHHH---HHHHHHHCTTCCEEECCCCTT--CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred EEECCCCCCCCHHH---HHHHHhcCCCCCEEcCCCCCC--cChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh
Confidence 6666666 444322 2222344556666666555 3 45544555555566 66666666553 12 223444444
Q ss_pred CCccccccCcc
Q 007916 248 APQLEELGTGS 258 (585)
Q Consensus 248 ~~~L~~L~l~~ 258 (585)
+++|++|++.+
T Consensus 221 ~~~L~~L~l~~ 231 (336)
T 2ast_B 221 CPNLVHLDLSD 231 (336)
T ss_dssp CTTCSEEECTT
T ss_pred CCCCCEEeCCC
Confidence 55555554443
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=1.3e-25 Score=242.69 Aligned_cols=379 Identities=16% Similarity=0.156 Sum_probs=193.0
Q ss_pred hCCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccC
Q 007916 117 KYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPES 196 (585)
Q Consensus 117 ~~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 196 (585)
.+++|++|+++++.+++.....+.. +++|++|++++|. ++. .++.. .+++|++|++++|.+++.... .+...
T Consensus 221 ~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~-l~~-~~~~~--~l~~L~~L~L~~n~l~~~ip~---~~~~~ 292 (768)
T 3rgz_A 221 DCSALQHLDISGNKLSGDFSRAIST-CTELKLLNISSNQ-FVG-PIPPL--PLKSLQYLSLAENKFTGEIPD---FLSGA 292 (768)
T ss_dssp TCCSCCEEECCSSCCCSCHHHHTTT-CSSCCEEECCSSC-CEE-SCCCC--CCTTCCEEECCSSEEEESCCC---CSCTT
T ss_pred cCCCCCEEECcCCcCCCcccHHHhc-CCCCCEEECCCCc-ccC-ccCcc--ccCCCCEEECcCCccCCccCH---HHHhh
Confidence 3455555555555544433333332 4555555555543 110 00000 345555555555544322111 11123
Q ss_pred CCCcCEEEeccCCCC--CChHHHHHHHhcCCCCcEEEecCCcchhHHHH-HHHhCCccccccCcccccc-cCCCchhhHH
Q 007916 197 FTSLEVLNFANLTSE--VNTDALERLVSRCKSLKVLKVNKSISLEQLQR-LLVRAPQLEELGTGSFLQD-LTARPYADLE 272 (585)
Q Consensus 197 ~~~L~~L~l~~~~~~--~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~-~~~~~~~~l~ 272 (585)
+++|++|+++++... ++.. +..+++|++|++++|.....++. .+..+++|++|++..+... ..+..+..+.
T Consensus 293 ~~~L~~L~Ls~n~l~~~~p~~-----~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 367 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYGAVPPF-----FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367 (768)
T ss_dssp CTTCSEEECCSSEEEECCCGG-----GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHT
T ss_pred cCcCCEEECcCCcCCCccchH-----HhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhh
Confidence 477888888776422 3333 66778888888887765444443 3777888888888776543 2333333222
Q ss_pred -HHh-----------------hc--CCcccccccccccCcCCHHHHhhcCCCCcEEEecccccCChhHHHHHhcCCCCcE
Q 007916 273 -SAF-----------------NN--CKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRR 332 (585)
Q Consensus 273 -~~~-----------------~~--~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~ 332 (585)
.+. .. +++|+.|....+.-...++..+..+++|++|++++|.+... ++..+..+++|+.
T Consensus 368 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~ 446 (768)
T 3rgz_A 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT-IPSSLGSLSKLRD 446 (768)
T ss_dssp TTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCE
T ss_pred cCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCc-ccHHHhcCCCCCE
Confidence 000 00 22333333111111112334455667777777777764432 2233456677777
Q ss_pred EEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHHHHHhcCccchhhhccCCCCCHHHHHHHHHhCCC
Q 007916 333 LWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPN 412 (585)
Q Consensus 333 L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~ 412 (585)
|++.++.....++..+..+++|+.|++++|. ++......+ ..+++|+.|+++.+.+++.....+. .+++
T Consensus 447 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~---------l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~ 515 (768)
T 3rgz_A 447 LKLWLNMLEGEIPQELMYVKTLETLILDFND---------LTGEIPSGL-SNCTNLNWISLSNNRLTGEIPKWIG-RLEN 515 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSC---------CCSCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGG-GCTT
T ss_pred EECCCCcccCcCCHHHcCCCCceEEEecCCc---------ccCcCCHHH-hcCCCCCEEEccCCccCCcCChHHh-cCCC
Confidence 7776654333344444566777777777654 221111111 2366777776666666544333333 5677
Q ss_pred CceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHh-------------------------
Q 007916 413 FTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIG------------------------- 466 (585)
Q Consensus 413 L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~------------------------- 466 (585)
|+.|++++|.. + ..++..+..+++|+.|++++ .++......+.
T Consensus 516 L~~L~L~~N~l------~-----~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (768)
T 3rgz_A 516 LAILKLSNNSF------S-----GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584 (768)
T ss_dssp CCEEECCSSCC------E-----EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCC
T ss_pred CCEEECCCCcc------c-----CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccc
Confidence 77777765543 1 11122244566677776654 21111000000
Q ss_pred --------------------------------------------hcCccccceecccccCChHHHHHHHhcCCCccEEEe
Q 007916 467 --------------------------------------------KYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEI 502 (585)
Q Consensus 467 --------------------------------------------~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l 502 (585)
..+++|+.|++++|+++.. ++..+..+++|+.|++
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~-ip~~l~~l~~L~~L~L 663 (768)
T 3rgz_A 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY-IPKEIGSMPYLFILNL 663 (768)
T ss_dssp TTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC-CCGGGGGCTTCCEEEC
T ss_pred ccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccccc-CCHHHhccccCCEEeC
Confidence 0135566777777765432 2223456677777777
Q ss_pred cCCCCChHHHHHHHhcCcCCcEEEccccccC
Q 007916 503 RDCPFGNEALLSGLEKYESMRSLWMSACNVT 533 (585)
Q Consensus 503 ~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it 533 (585)
++|.++.. ++..+..+++|+.|+|++|+++
T Consensus 664 s~N~l~g~-ip~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 664 GHNDISGS-IPDEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp CSSCCCSC-CCGGGGGCTTCCEEECCSSCCE
T ss_pred cCCccCCC-CChHHhCCCCCCEEECCCCccc
Confidence 77776432 4455566677777777777654
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=4.7e-26 Score=246.24 Aligned_cols=135 Identities=16% Similarity=0.187 Sum_probs=82.1
Q ss_pred hhCCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHH--HHHhCCCCCEEEcccCCCCcccccccccc
Q 007916 116 AKYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAA--IATHCKNLTELDIQENGIEDSSGSWLSCF 193 (585)
Q Consensus 116 ~~~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 193 (585)
..+++|++|+++++.++......+...+++|++|++++|. ++...... .+..+++|++|++++|.+.+... .
T Consensus 123 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~ 196 (768)
T 3rgz_A 123 GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGNKISGDVD-----V 196 (768)
T ss_dssp GGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC-CEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-----C
T ss_pred hCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc-cCCcCChhhhhhccCCCCCEEECCCCcccccCC-----c
Confidence 3567777777777754432222222336677777777754 32221111 24567778888887776654321 1
Q ss_pred ccCCCCcCEEEeccCCCCCChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhCCccccccCccccc
Q 007916 194 PESFTSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQ 261 (585)
Q Consensus 194 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 261 (585)
..+++|++|+++++...-... . +..+++|++|++++|.....++..+..+++|++|++..+..
T Consensus 197 -~~l~~L~~L~Ls~n~l~~~~~---~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 259 (768)
T 3rgz_A 197 -SRCVNLEFLDVSSNNFSTGIP---F-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259 (768)
T ss_dssp -TTCTTCCEEECCSSCCCSCCC---B-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCC
T ss_pred -ccCCcCCEEECcCCcCCCCCc---c-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcc
Confidence 467788888887765321111 1 55677888888888775556777777888888888877543
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=1.8e-25 Score=236.42 Aligned_cols=135 Identities=17% Similarity=0.081 Sum_probs=70.3
Q ss_pred HHhhCCCccEEEecCCCCcccCccCCCCCCCchHHHHHHHHhhCCCCcEEEecccccChHHHHHHHhhCCCccEEEecCC
Q 007916 75 LTRRFPNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSC 154 (585)
Q Consensus 75 l~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~ 154 (585)
.+..+++|+.|++.++.-. . ..+. ....+++|++|+++++.++......+. .+++|++|++++|
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~-~--~~~~------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n 115 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIY-W--IHED------------TFQSQHRLDTLVLTANPLIFMAETALS-GPKALKHLFFIQT 115 (606)
T ss_dssp TSTTCTTCSEEECTTCCCC-E--ECTT------------TTTTCTTCCEEECTTCCCSEECTTTTS-SCTTCCEEECTTS
T ss_pred HhccCccceEEECCCCccc-e--eChh------------hccCccccCeeeCCCCcccccChhhhc-ccccccEeecccc
Confidence 3456667777777765311 1 0011 112467777777777765543222222 2667777777765
Q ss_pred CCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCCCcCEEEeccCCCC-CChHHHHHHHhcCCCCc--EEE
Q 007916 155 DGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSE-VNTDALERLVSRCKSLK--VLK 231 (585)
Q Consensus 155 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~--~L~ 231 (585)
. ++... +..+..+++|++|++++|.++.... ..+ ..+++|++|+++++... +..+. +..+++|+ .|+
T Consensus 116 ~-i~~l~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~-~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~l~L~ 185 (606)
T 3t6q_A 116 G-ISSID-FIPLHNQKTLESLYLGSNHISSIKL---PKG-FPTEKLKVLDFQNNAIHYLSKED----MSSLQQATNLSLN 185 (606)
T ss_dssp C-CSCGG-GSCCTTCTTCCEEECCSSCCCCCCC---CTT-CCCTTCCEEECCSSCCCEECHHH----HHTTTTCCSEEEE
T ss_pred C-cccCC-cchhccCCcccEEECCCCcccccCc---ccc-cCCcccCEEEcccCcccccChhh----hhhhcccceeEEe
Confidence 4 32211 1113467777777777776665321 111 12667777777766422 21221 44556666 555
Q ss_pred ecCC
Q 007916 232 VNKS 235 (585)
Q Consensus 232 l~~~ 235 (585)
+++|
T Consensus 186 l~~n 189 (606)
T 3t6q_A 186 LNGN 189 (606)
T ss_dssp CTTC
T ss_pred cCCC
Confidence 5554
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=1e-21 Score=192.42 Aligned_cols=303 Identities=16% Similarity=0.163 Sum_probs=162.1
Q ss_pred CCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCC
Q 007916 118 YPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESF 197 (585)
Q Consensus 118 ~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 197 (585)
+++|++|+++++.+.+. ..+. .+++|++|++++|. ++.. +. +..+++|++|++++|.+++.+ ....+
T Consensus 43 l~~L~~L~l~~~~i~~~--~~~~-~~~~L~~L~l~~n~-i~~~--~~-~~~l~~L~~L~L~~n~i~~~~------~~~~l 109 (347)
T 4fmz_A 43 LESITKLVVAGEKVASI--QGIE-YLTNLEYLNLNGNQ-ITDI--SP-LSNLVKLTNLYIGTNKITDIS------ALQNL 109 (347)
T ss_dssp HTTCSEEECCSSCCCCC--TTGG-GCTTCCEEECCSSC-CCCC--GG-GTTCTTCCEEECCSSCCCCCG------GGTTC
T ss_pred cccccEEEEeCCccccc--hhhh-hcCCccEEEccCCc-cccc--hh-hhcCCcCCEEEccCCcccCch------HHcCC
Confidence 45666666666654431 1222 25666666666653 3221 11 346666677776666655421 12456
Q ss_pred CCcCEEEeccCCCCCChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhCCccccccCcccccccCCCchhhHHHHhhc
Q 007916 198 TSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFNN 277 (585)
Q Consensus 198 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~ 277 (585)
++|++|+++++...--.. +..+++|+.|++++|.....++. +..+++|++|++.++...
T Consensus 110 ~~L~~L~l~~n~i~~~~~-----~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~--------------- 168 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISP-----LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK--------------- 168 (347)
T ss_dssp TTCSEEECTTSCCCCCGG-----GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC---------------
T ss_pred CcCCEEECcCCcccCchh-----hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcC---------------
Confidence 666666666654221111 44566666666666543222111 233333333333322100
Q ss_pred CCcccccccccccCcCCHHHHhhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEE
Q 007916 278 CKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEEL 357 (585)
Q Consensus 278 ~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L 357 (585)
..+. +..+++|++|++++|.+..... +..+++|+.|.+.
T Consensus 169 ----------------~~~~-~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~--------------------- 207 (347)
T 4fmz_A 169 ----------------DVTP-IANLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAY--------------------- 207 (347)
T ss_dssp ----------------CCGG-GGGCTTCSEEECTTSCCCCCGG---GGGCTTCCEEECC---------------------
T ss_pred ----------------Cchh-hccCCCCCEEEccCCccccccc---ccCCCccceeecc---------------------
Confidence 0000 2345555555555555333211 3344455555544
Q ss_pred EecCCCCCchhhccccChhhHHHHHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhh
Q 007916 358 RVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEA 437 (585)
Q Consensus 358 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~ 437 (585)
++. +++... ...+++|++|+++.+.+++... ...+++|++|++++|. +++.
T Consensus 208 ---~n~---------l~~~~~---~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~------l~~~----- 258 (347)
T 4fmz_A 208 ---VNQ---------ITDITP---VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQ------ISDI----- 258 (347)
T ss_dssp ---SSC---------CCCCGG---GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC------CCCC-----
T ss_pred ---cCC---------CCCCch---hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCc------cCCC-----
Confidence 432 111111 1224444444444444433221 2367888888887654 3311
Q ss_pred HHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHH
Q 007916 438 FGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGL 516 (585)
Q Consensus 438 l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~ 516 (585)
..+..+++|+.|++++ .+++. ..+ ..+++|+.|++++|.+++..... +..+++|++|++++|++++... +
T Consensus 259 --~~~~~l~~L~~L~l~~n~l~~~--~~~-~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~---~ 329 (347)
T 4fmz_A 259 --NAVKDLTKLKMLNVGSNQISDI--SVL-NNLSQLNSLFLNNNQLGNEDMEV-IGGLTNLTTLFLSQNHITDIRP---L 329 (347)
T ss_dssp --GGGTTCTTCCEEECCSSCCCCC--GGG-GGCTTCSEEECCSSCCCGGGHHH-HHTCTTCSEEECCSSSCCCCGG---G
T ss_pred --hhHhcCCCcCEEEccCCccCCC--hhh-cCCCCCCEEECcCCcCCCcChhH-hhccccCCEEEccCCccccccC---h
Confidence 1245678888888877 44443 222 37889999999999987765544 4789999999999999855311 6
Q ss_pred hcCcCCcEEEccccccC
Q 007916 517 EKYESMRSLWMSACNVT 533 (585)
Q Consensus 517 ~~l~~L~~L~l~~~~it 533 (585)
..+++|++|++++|+|+
T Consensus 330 ~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 330 ASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGCTTCSEESSSCC---
T ss_pred hhhhccceeehhhhccc
Confidence 78899999999999875
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=4.1e-25 Score=233.67 Aligned_cols=425 Identities=14% Similarity=0.066 Sum_probs=231.9
Q ss_pred CCccEEEecCCCCcccCccCCCCCCCchHHHHHHHHhhCCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCH
Q 007916 80 PNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFST 159 (585)
Q Consensus 80 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~ 159 (585)
+.++.|+++++.- ... .+.. ...+++|++|+++++.++......+.. +++|++|++++|. ++.
T Consensus 33 ~~l~~L~Ls~n~i-~~~--~~~~------------~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~-l~~ 95 (606)
T 3t6q_A 33 NSTECLEFSFNVL-PTI--QNTT------------FSRLINLTFLDLTRCQIYWIHEDTFQS-QHRLDTLVLTANP-LIF 95 (606)
T ss_dssp TTCCEEECTTCCC-SEE--CTTT------------STTCTTCSEEECTTCCCCEECTTTTTT-CTTCCEEECTTCC-CSE
T ss_pred CcCcEEEccCCcc-CcC--ChhH------------hccCccceEEECCCCccceeChhhccC-ccccCeeeCCCCc-ccc
Confidence 4689999987642 111 1111 236799999999999877643334444 8899999999875 422
Q ss_pred HHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCCCcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcch
Q 007916 160 DGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSISL 238 (585)
Q Consensus 160 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~ 238 (585)
..+..+..+++|++|++++|.++..+... ...+++|++|+++++... ++... ...+++|+.|++++|...
T Consensus 96 -~~~~~~~~l~~L~~L~L~~n~i~~l~~~~----~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 96 -MAETALSGPKALKHLFFIQTGISSIDFIP----LHNQKTLESLYLGSNHISSIKLPK----GFPTEKLKVLDFQNNAIH 166 (606)
T ss_dssp -ECTTTTSSCTTCCEEECTTSCCSCGGGSC----CTTCTTCCEEECCSSCCCCCCCCT----TCCCTTCCEEECCSSCCC
T ss_pred -cChhhhcccccccEeeccccCcccCCcch----hccCCcccEEECCCCcccccCccc----ccCCcccCEEEcccCccc
Confidence 22334568999999999999988753222 257899999999987633 22111 334899999999998654
Q ss_pred hHHHHHHHhCCccc--cccCcccccccCCC-chh-------------hHHHHhhcCC-----------------------
Q 007916 239 EQLQRLLVRAPQLE--ELGTGSFLQDLTAR-PYA-------------DLESAFNNCK----------------------- 279 (585)
Q Consensus 239 ~~~~~~~~~~~~L~--~L~l~~~~~~~~~~-~~~-------------~l~~~~~~~~----------------------- 279 (585)
...+..+..+++|+ .|++.++.....+. .+. .+......+.
T Consensus 167 ~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~ 246 (606)
T 3t6q_A 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246 (606)
T ss_dssp EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGG
T ss_pred ccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChh
Confidence 44567788899998 67777654322111 110 0000011000
Q ss_pred --------cccccccccccCcCCHHHHhhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcC
Q 007916 280 --------NIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNC 351 (585)
Q Consensus 280 --------~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~ 351 (585)
+++.+......-....+..+..+++|++|++++|.++. ++..+..+++|++|++.++......+..+..+
T Consensus 247 ~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 324 (606)
T 3t6q_A 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISASNF 324 (606)
T ss_dssp GGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC
T ss_pred HhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC--CChhhcccccCCEEECccCCcCcCchhhhhcc
Confidence 12222200000001111223445666666666665432 22223455666666666543222222233455
Q ss_pred CCCcEEEecCCCCCch---hh--------------ccccChhhH-HHHHhcCccchhhhccCCCCCHHHHHHHHHhCCCC
Q 007916 352 PLLEELRVFPADPFDE---EI--------------IHGVTEEGF-VAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNF 413 (585)
Q Consensus 352 ~~L~~L~l~~~~~~~~---~~--------------~~~~~~~~~-~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L 413 (585)
++|+.|++.++.-... .. .. ++.... ......+++|++|+++.+.+++.....+ ..+++|
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L 402 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF-KECPQL 402 (606)
T ss_dssp TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT-TTCTTC
T ss_pred CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCcCCcCCHHHh-cCCccC
Confidence 5566665555431000 00 00 111100 0001124555555544444432211112 245555
Q ss_pred ceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHH--HH
Q 007916 414 THFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQ--CV 490 (585)
Q Consensus 414 ~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~--~l 490 (585)
++|+++++.. +. ......+..+++|+.|++++ .++......++ .+++|+.|++++|.+++..+. ..
T Consensus 403 ~~L~l~~n~l------~~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~ 471 (606)
T 3t6q_A 403 ELLDLAFTRL------KV----KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD-GLPALQHLNLQGNHFPKGNIQKTNS 471 (606)
T ss_dssp SEEECTTCCE------EC----CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT-TCTTCCEEECTTCBCGGGEECSSCG
T ss_pred CeEECCCCcC------CC----cccchhhhCcccCCEEECCCCccCCcCHHHHh-CCCCCCEEECCCCCCCccccccchh
Confidence 5665554432 10 00011234567788888876 44443333333 678888888888887653221 23
Q ss_pred HhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccCHHHHHHHHhhCCCC
Q 007916 491 LEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMNACRRLAKQMPRL 547 (585)
Q Consensus 491 ~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it~~~~~~~~~~~p~l 547 (585)
+..+++|+.|++++|.++.. .+..+..+++|++|+|++|+++..+...+. .++.+
T Consensus 472 ~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~l~~L 526 (606)
T 3t6q_A 472 LQTLGRLEILVLSFCDLSSI-DQHAFTSLKMMNHVDLSHNRLTSSSIEALS-HLKGI 526 (606)
T ss_dssp GGGCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCGGGGGGGT-TCCSC
T ss_pred hccCCCccEEECCCCccCcc-ChhhhccccCCCEEECCCCccCcCChhHhC-ccccc
Confidence 56788888888888887543 124457788899999999888765544442 35555
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=2.6e-21 Score=197.11 Aligned_cols=324 Identities=15% Similarity=0.123 Sum_probs=221.6
Q ss_pred hhCCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCcccccccccccc
Q 007916 116 AKYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPE 195 (585)
Q Consensus 116 ~~~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 195 (585)
..+++|++|+++++.+++... ...+++|++|++++|. ++.. .. +..+++|++|++++|.+++.+. ..
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~-l~~~--~~-~~~l~~L~~L~L~~n~l~~~~~------~~ 131 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQ-IADI--TP-LANLTNLTGLTLFNNQITDIDP------LK 131 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCCC--GG-GTTCTTCCEEECCSSCCCCCGG------GT
T ss_pred hhhcCCCEEECCCCccCCchh---hhccccCCEEECCCCc-cccC--hh-hcCCCCCCEEECCCCCCCCChH------Hc
Confidence 357888999998887665322 3347889999988875 3221 12 5678889999998888776432 35
Q ss_pred CCCCcCEEEeccCCCCCChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhCCccccccCcccccccCCCchhhHHHHh
Q 007916 196 SFTSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAF 275 (585)
Q Consensus 196 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~ 275 (585)
.+++|++|+++++...--.. +..+++|+.|+++++. ..+. .+..+++|+.|++..+...
T Consensus 132 ~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l~~~~--~~~~-~~~~l~~L~~L~l~~n~l~------------- 190 (466)
T 1o6v_A 132 NLTNLNRLELSSNTISDISA-----LSGLTSLQQLSFGNQV--TDLK-PLANLTTLERLDISSNKVS------------- 190 (466)
T ss_dssp TCTTCSEEEEEEEEECCCGG-----GTTCTTCSEEEEEESC--CCCG-GGTTCTTCCEEECCSSCCC-------------
T ss_pred CCCCCCEEECCCCccCCChh-----hccCCcccEeecCCcc--cCch-hhccCCCCCEEECcCCcCC-------------
Confidence 78888899888775321111 6678888888886432 2211 2667778888877664211
Q ss_pred hcCCcccccccccccCcCCHHHHhhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCc
Q 007916 276 NNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLE 355 (585)
Q Consensus 276 ~~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~ 355 (585)
.++ .+..+++|++|++++|.+..... +..+++|+.|++.++.... + ..+..+++|+
T Consensus 191 ------------------~~~-~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~ 246 (466)
T 1o6v_A 191 ------------------DIS-VLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKD-I-GTLASLTNLT 246 (466)
T ss_dssp ------------------CCG-GGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCS
T ss_pred ------------------CCh-hhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCccc-c-hhhhcCCCCC
Confidence 011 24567888888888887554321 4567888888888762211 1 1245778888
Q ss_pred EEEecCCCCCchhhccccChhhHHHHHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcch
Q 007916 356 ELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMD 435 (585)
Q Consensus 356 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~ 435 (585)
.|++++|. ++.... ...+++|+.|.++.+.+++... ...+++|+.|++++|. +++.+
T Consensus 247 ~L~l~~n~---------l~~~~~---~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~------l~~~~-- 303 (466)
T 1o6v_A 247 DLDLANNQ---------ISNLAP---LSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQ------LEDIS-- 303 (466)
T ss_dssp EEECCSSC---------CCCCGG---GTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSC------CSCCG--
T ss_pred EEECCCCc---------cccchh---hhcCCCCCEEECCCCccCcccc---ccCCCccCeEEcCCCc------ccCch--
Confidence 99888865 322211 3357888888887777765332 3478999999998764 33211
Q ss_pred hhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHH
Q 007916 436 EAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLS 514 (585)
Q Consensus 436 ~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~ 514 (585)
. ...+++|+.|++++ .+++... + ..+++|+.|++++|.+++. . .+..+++|+.|++++|++++.. +
T Consensus 304 ----~-~~~l~~L~~L~L~~n~l~~~~~--~-~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l~~~~-~- 370 (466)
T 1o6v_A 304 ----P-ISNLKNLTYLTLYFNNISDISP--V-SSLTKLQRLFFYNNKVSDV--S-SLANLTNINWLSAGHNQISDLT-P- 370 (466)
T ss_dssp ----G-GGGCTTCSEEECCSSCCSCCGG--G-GGCTTCCEEECCSSCCCCC--G-GGTTCTTCCEEECCSSCCCBCG-G-
T ss_pred ----h-hcCCCCCCEEECcCCcCCCchh--h-ccCccCCEeECCCCccCCc--h-hhccCCCCCEEeCCCCccCccc-h-
Confidence 1 56789999999988 5554433 3 3789999999999998764 2 3578999999999999996542 2
Q ss_pred HHhcCcCCcEEEccccccCH
Q 007916 515 GLEKYESMRSLWMSACNVTM 534 (585)
Q Consensus 515 ~~~~l~~L~~L~l~~~~it~ 534 (585)
+..+++|+.|++++|+++.
T Consensus 371 -~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 371 -LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp -GTTCTTCCEEECCCEEEEC
T ss_pred -hhcCCCCCEEeccCCcccC
Confidence 6889999999999999764
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=2.3e-22 Score=210.07 Aligned_cols=133 Identities=16% Similarity=0.124 Sum_probs=76.8
Q ss_pred hCCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccC
Q 007916 117 KYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPES 196 (585)
Q Consensus 117 ~~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 196 (585)
.+++|++|+++++.++......+. .+++|++|++++|. ++. ..+..+..+++|++|++++|.++..+ .......
T Consensus 48 ~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~~ 121 (549)
T 2z81_A 48 ACANLQVLILKSSRINTIEGDAFY-SLGSLEHLDLSDNH-LSS-LSSSWFGPLSSLKYLNLMGNPYQTLG---VTSLFPN 121 (549)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTSC-CCS-CCHHHHTTCTTCCEEECTTCCCSSSC---SSCSCTT
T ss_pred cCCcccEEECCCCCcCccChhhcc-ccccCCEEECCCCc-cCc-cCHHHhccCCCCcEEECCCCcccccc---hhhhhhc
Confidence 467788888887766553322333 36778888887764 322 22333457778888888777766432 1122346
Q ss_pred CCCcCEEEeccCC--CCCChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhCCccccccCccc
Q 007916 197 FTSLEVLNFANLT--SEVNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSF 259 (585)
Q Consensus 197 ~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 259 (585)
+++|++|+++++. ..++... +..+++|++|++++|......+..+..+++|++|++..+
T Consensus 122 l~~L~~L~L~~n~~~~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 122 LTNLQTLRIGNVETFSEIRRID----FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp CTTCCEEEEEESSSCCEECTTT----TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred cCCccEEECCCCccccccCHhh----hhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 6777777777653 1122211 455677777777766543334445555666666666543
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=1e-21 Score=205.08 Aligned_cols=398 Identities=13% Similarity=0.090 Sum_probs=207.2
Q ss_pred HHhhCCCccEEEecCCCCcccCccCCCCCCCchHHHHHHHHhhCCCCcEEEecccccChHHHHHHHhhCCCccEEEecCC
Q 007916 75 LTRRFPNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSC 154 (585)
Q Consensus 75 l~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~ 154 (585)
.+..+++|+.|++.++. +... .+ .....+++|++|+++++.+++.....+.. +++|++|++++|
T Consensus 45 ~~~~l~~L~~L~Ls~n~-i~~~--~~------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n 108 (549)
T 2z81_A 45 DLRACANLQVLILKSSR-INTI--EG------------DAFYSLGSLEHLDLSDNHLSSLSSSWFGP-LSSLKYLNLMGN 108 (549)
T ss_dssp TTSSCTTCCEEECTTSC-CCEE--CT------------TTTTTCTTCCEEECTTSCCCSCCHHHHTT-CTTCCEEECTTC
T ss_pred hhhcCCcccEEECCCCC-cCcc--Ch------------hhccccccCCEEECCCCccCccCHHHhcc-CCCCcEEECCCC
Confidence 34567788888888663 2111 01 11235788999999999877655544554 889999999987
Q ss_pred CCCCHHHHHHHHHhCCCCCEEEcccCC-CCccccccccccccCCCCcCEEEeccCCCC--CChHHHHHHHhcCCCCcEEE
Q 007916 155 DGFSTDGLAAIATHCKNLTELDIQENG-IEDSSGSWLSCFPESFTSLEVLNFANLTSE--VNTDALERLVSRCKSLKVLK 231 (585)
Q Consensus 155 ~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~--~~~~~l~~l~~~~~~L~~L~ 231 (585)
. ++....+..+..+++|++|++++|. +...+.. ....+++|++|+++++... .+.. +..+++|++|+
T Consensus 109 ~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~-----l~~l~~L~~L~ 178 (549)
T 2z81_A 109 P-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI----DFAGLTSLNELEIKALSLRNYQSQS-----LKSIRDIHHLT 178 (549)
T ss_dssp C-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT----TTTTCCEEEEEEEEETTCCEECTTT-----TTTCSEEEEEE
T ss_pred c-ccccchhhhhhccCCccEEECCCCccccccCHh----hhhcccccCeeeccCCcccccChhh-----hhccccCceEe
Confidence 5 4322223344678899999999886 3332211 2246788888888876532 2222 55677788888
Q ss_pred ecCCcchhHHHHHHHhCCccccccCcccccccCC---C----------------------chhhHHHHhhcCCcccccc-
Q 007916 232 VNKSISLEQLQRLLVRAPQLEELGTGSFLQDLTA---R----------------------PYADLESAFNNCKNIHTLS- 285 (585)
Q Consensus 232 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~----------------------~~~~l~~~~~~~~~L~~l~- 285 (585)
++.+.....-......+++|+.|++..+.....+ . ....+......+++++.+.
T Consensus 179 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l 258 (549)
T 2z81_A 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258 (549)
T ss_dssp EECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred cccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccc
Confidence 7776532222223345777777777664332110 0 0111222222333333332
Q ss_pred -cccccCc---------------------------------CCHHHHhhcCCCCcEEEecccccCChhHHHHHhcCCCCc
Q 007916 286 -GLWEAVP---------------------------------LYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLR 331 (585)
Q Consensus 286 -~~~~~~~---------------------------------~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~ 331 (585)
....... ..+.......++|+.|+++++.+... ...+...+++|+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~i-p~~~~~~l~~L~ 337 (549)
T 2z81_A 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV-PCSFSQHLKSLE 337 (549)
T ss_dssp ESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCC-CHHHHHHCTTCC
T ss_pred ccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccC-CHHHHhcCcccc
Confidence 0000000 00111122234455555555543321 112223455666
Q ss_pred EEEecccCChhhHHHH---HhcCCCCcEEEecCCCCCchhhccccChhhH-HHHHhcCccchhhhccCCCCCHHHHHHHH
Q 007916 332 RLWVLDTVEDKGLEAV---GSNCPLLEELRVFPADPFDEEIIHGVTEEGF-VAVSFGCRRLHYVLYFCRQMTNAAVATIV 407 (585)
Q Consensus 332 ~L~l~~~~~~~~l~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~L~~~~~~l~~~~l~~l~ 407 (585)
.|+++++.....+... ...+++|+.|++++|. ++.... ......+++|++|+++.+.++. +....
T Consensus 338 ~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~---------l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~ 406 (549)
T 2z81_A 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH---------LRSMQKTGEILLTLKNLTSLDISRNTFHP--MPDSC 406 (549)
T ss_dssp EEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC---------CCCHHHHHHHGGGCTTCCEEECTTCCCCC--CCSCC
T ss_pred EEEccCCccccccccchhhhhccccCcEEEccCCc---------ccccccchhhhhcCCCCCEEECCCCCCcc--CChhh
Confidence 6666554322222111 2345556666666543 332211 1222335556666555555541 11111
Q ss_pred HhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHH
Q 007916 408 QNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRG 486 (585)
Q Consensus 408 ~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~ 486 (585)
..+++|++|++++|.. +..+ .. ..++|+.|++++ .+++. ...+++|+.|++++|+++.
T Consensus 407 ~~~~~L~~L~Ls~N~l------~~l~--~~------~~~~L~~L~Ls~N~l~~~-----~~~l~~L~~L~Ls~N~l~~-- 465 (549)
T 2z81_A 407 QWPEKMRFLNLSSTGI------RVVK--TC------IPQTLEVLDVSNNNLDSF-----SLFLPRLQELYISRNKLKT-- 465 (549)
T ss_dssp CCCTTCCEEECTTSCC------SCCC--TT------SCTTCSEEECCSSCCSCC-----CCCCTTCCEEECCSSCCSS--
T ss_pred cccccccEEECCCCCc------cccc--ch------hcCCceEEECCCCChhhh-----cccCChhcEEECCCCccCc--
Confidence 2345566666654432 2110 00 114567777765 33332 1257778888888887653
Q ss_pred HHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccC
Q 007916 487 MQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVT 533 (585)
Q Consensus 487 l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it 533 (585)
+.. ...+++|+.|++++|.++.. .+..+..+++|+.|++++|+++
T Consensus 466 ip~-~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 466 LPD-ASLFPVLLVMKISRNQLKSV-PDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp CCC-GGGCTTCCEEECCSSCCCCC-CTTGGGGCTTCCEEECCSSCBC
T ss_pred CCC-cccCccCCEEecCCCccCCc-CHHHHhcCcccCEEEecCCCcc
Confidence 332 24577888888888877432 2234567788888888888754
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=5.1e-23 Score=213.32 Aligned_cols=157 Identities=13% Similarity=0.174 Sum_probs=101.1
Q ss_pred hcCCCCcEEEecCCCCCchhhccccChhhHHHHHhcCccchhhhccCCCCCHH-HHHHHHHhCCCCceEEeeccCCCCCC
Q 007916 349 SNCPLLEELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNA-AVATIVQNCPNFTHFRLCIMTPGLPD 427 (585)
Q Consensus 349 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~l~~~-~l~~l~~~~~~L~~L~l~~~~~~~~~ 427 (585)
..+++|+.|+++++. ++......+ ..+++|+.|+++.+.+++. .+......+++|++|++++|..
T Consensus 321 ~~l~~L~~L~Ls~n~---------l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l---- 386 (520)
T 2z7x_B 321 SKISPFLHLDFSNNL---------LTDTVFENC-GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV---- 386 (520)
T ss_dssp SSCCCCCEEECCSSC---------CCTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC----
T ss_pred hhCCcccEEEeECCc---------cChhhhhhh-ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC----
Confidence 456778888888764 333211122 3477888888877888752 2223334788888888886643
Q ss_pred CCCC-CcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCC
Q 007916 428 YLTN-EPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDC 505 (585)
Q Consensus 428 ~l~~-~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~ 505 (585)
++ .+ . ..+..+++|+.|++++ .+++..... ..++|+.|++++|+++. +...+..+++|++|++++|
T Consensus 387 --~~~l~--~---~~~~~l~~L~~L~Ls~N~l~~~~~~~---l~~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 387 --SYDEK--K---GDCSWTKSLLSLNMSSNILTDTIFRC---LPPRIKVLDLHSNKIKS--IPKQVVKLEALQELNVASN 454 (520)
T ss_dssp --BCCGG--G---CSCCCCTTCCEEECCSSCCCGGGGGS---CCTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSS
T ss_pred --Ccccc--c---chhccCccCCEEECcCCCCCcchhhh---hcccCCEEECCCCcccc--cchhhhcCCCCCEEECCCC
Confidence 21 11 1 0134567888888877 555443321 12688999999888763 4444457889999999999
Q ss_pred CCChHHHHH-HHhcCcCCcEEEccccccC
Q 007916 506 PFGNEALLS-GLEKYESMRSLWMSACNVT 533 (585)
Q Consensus 506 ~~~~~~l~~-~~~~l~~L~~L~l~~~~it 533 (585)
.++. ++. .+..+++|++|++++|+++
T Consensus 455 ~l~~--l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 455 QLKS--VPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CCCC--CCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCc--cCHHHhccCCcccEEECcCCCCc
Confidence 8853 222 3567888999999998864
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=3.3e-24 Score=226.69 Aligned_cols=136 Identities=13% Similarity=0.092 Sum_probs=67.3
Q ss_pred CccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHH
Q 007916 385 CRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFE 463 (585)
Q Consensus 385 ~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~ 463 (585)
+++|+.|.+..+.++..........+++|++|++++|.. + ......+..+++|++|++++ .+++..+.
T Consensus 398 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l------~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 466 (606)
T 3vq2_A 398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT------K-----IDFDGIFLGLTSLNTLKMAGNSFKDNTLS 466 (606)
T ss_dssp CTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC------E-----ECCTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred CCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC------C-----ccchhhhcCCCCCCEEECCCCcCCCcchH
Confidence 455555555555444332211222556666666665432 1 11111234556666666655 33332111
Q ss_pred HHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccC
Q 007916 464 YIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVT 533 (585)
Q Consensus 464 ~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it 533 (585)
.....+++|+.|++++|.+++... ..+..+++|++|++++|.+++. .+..+..+++|++|+|++|+++
T Consensus 467 ~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 467 NVFANTTNLTFLDLSKCQLEQISW-GVFDTLHRLQLLNMSHNNLLFL-DSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCE-EGGGTTTCTTCCEEECTTSCCC
T ss_pred HhhccCCCCCEEECCCCcCCccCh-hhhcccccCCEEECCCCcCCCc-CHHHccCCCcCCEEECCCCcCc
Confidence 111255666666666666544211 1235566677777766666432 1234456666677777766654
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=1.3e-22 Score=210.16 Aligned_cols=178 Identities=11% Similarity=0.092 Sum_probs=119.3
Q ss_pred CCCcEEEecCCCCCchhhccccChhhHHHHHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCC
Q 007916 352 PLLEELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTN 431 (585)
Q Consensus 352 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~ 431 (585)
.+|+.|+++++. +....+ ...+++|++|+++.+.+++.....+ ..+++|++|++++|. +++
T Consensus 302 ~~L~~L~l~~n~---------l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~------l~~ 362 (520)
T 2z7x_B 302 MNIKNFTVSGTR---------MVHMLC---PSKISPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMNQ------LKE 362 (520)
T ss_dssp CCCSEEEEESSC---------CCCCCC---CSSCCCCCEEECCSSCCCTTTTTTC-CCCSSCCEEECCSSC------CCB
T ss_pred CceeEEEcCCCc---------cccccc---hhhCCcccEEEeECCccChhhhhhh-ccCCCCCEEEccCCc------cCc
Confidence 457777777654 221110 1357889999888888876444444 378899999998664 441
Q ss_pred CcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcC-CCccEEEecCCCCCh
Q 007916 432 EPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGC-PKLRKLEIRDCPFGN 509 (585)
Q Consensus 432 ~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~-~~L~~L~l~~~~~~~ 509 (585)
-..+...+..+++|+.|++++ .+++.........+++|+.|++++|.+++... ... ++|+.|++++|.++
T Consensus 363 ---l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~----~~l~~~L~~L~Ls~N~l~- 434 (520)
T 2z7x_B 363 ---LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF----RCLPPRIKVLDLHSNKIK- 434 (520)
T ss_dssp ---HHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG----GSCCTTCCEEECCSSCCC-
T ss_pred ---cccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchh----hhhcccCCEEECCCCccc-
Confidence 124455677889999999988 55542222222367899999999999875432 233 79999999999986
Q ss_pred HHHHHHHhcCcCCcEEEccccccCHHHHHHHHhhCCCCcEEEeccCCCC
Q 007916 510 EALLSGLEKYESMRSLWMSACNVTMNACRRLAKQMPRLNVEVMKEDGSD 558 (585)
Q Consensus 510 ~~l~~~~~~l~~L~~L~l~~~~it~~~~~~~~~~~p~l~~~~~~~~~~~ 558 (585)
.++..+..+++|++|++++|+++.-... ....++++..-.+.+.+..
T Consensus 435 -~ip~~~~~l~~L~~L~L~~N~l~~l~~~-~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 435 -SIPKQVVKLEALQELNVASNQLKSVPDG-IFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp -CCCGGGGGCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCBC
T ss_pred -ccchhhhcCCCCCEEECCCCcCCccCHH-HhccCCcccEEECcCCCCc
Confidence 2445556899999999999997631111 2345677776666666543
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=4.9e-24 Score=223.90 Aligned_cols=108 Identities=16% Similarity=0.130 Sum_probs=65.6
Q ss_pred hCCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccC
Q 007916 117 KYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPES 196 (585)
Q Consensus 117 ~~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 196 (585)
.+++|++|+++++.++......+. .+++|++|+++++. ++.. .+..+..+++|++|++++|.++..+... ...
T Consensus 50 ~l~~L~~L~Ls~n~i~~i~~~~~~-~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~----~~~ 122 (570)
T 2z63_A 50 SFPELQVLDLSRCEIQTIEDGAYQ-SLSHLSTLILTGNP-IQSL-ALGAFSGLSSLQKLVAVETNLASLENFP----IGH 122 (570)
T ss_dssp TCSSCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTCC-CCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCS----CTT
T ss_pred CCCCceEEECCCCcCCccCccccc-CchhCCEEeCcCCc-CCcc-CHhhhcCccccccccccccccccCCCcc----ccc
Confidence 567788888887766543222233 36778888887754 3221 1223346777888888777766543211 246
Q ss_pred CCCcCEEEeccCCCC---CChHHHHHHHhcCCCCcEEEecCCc
Q 007916 197 FTSLEVLNFANLTSE---VNTDALERLVSRCKSLKVLKVNKSI 236 (585)
Q Consensus 197 ~~~L~~L~l~~~~~~---~~~~~l~~l~~~~~~L~~L~l~~~~ 236 (585)
+++|++|+++++... ++.. +..+++|++|++++|.
T Consensus 123 l~~L~~L~L~~n~l~~~~lp~~-----~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 123 LKTLKELNVAHNLIQSFKLPEY-----FSNLTNLEHLDLSSNK 160 (570)
T ss_dssp CTTCCEEECCSSCCCCCCCCGG-----GGGCTTCCEEECTTSC
T ss_pred cccccEEecCCCccceecChhh-----hcccCCCCEEeCcCCc
Confidence 777778877776422 2333 5667777777777764
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.85 E-value=1.4e-23 Score=221.65 Aligned_cols=334 Identities=11% Similarity=0.105 Sum_probs=182.8
Q ss_pred HHHHHHhCCCCCEEEcccCCCCcc--cccc-----------cccccc--CCCCcCEEEeccCCC--CCChHHHHHHHhcC
Q 007916 162 LAAIATHCKNLTELDIQENGIEDS--SGSW-----------LSCFPE--SFTSLEVLNFANLTS--EVNTDALERLVSRC 224 (585)
Q Consensus 162 l~~~~~~~~~L~~L~L~~~~~~~~--~~~~-----------l~~~~~--~~~~L~~L~l~~~~~--~~~~~~l~~l~~~~ 224 (585)
++..+.++++|++|++++|.+++. ...| +..... .+++|++|+++++.. .++.. +..+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-----l~~l 272 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-----LKAL 272 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-----TTTC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-----HhcC
Confidence 344456778888888888877662 1111 111123 677788888877642 24433 6677
Q ss_pred CCCcEEEecCCc-chh-HHHHHHHhC------CccccccCcccccccCCCchhhHHH--HhhcCCcccccccccccCcCC
Q 007916 225 KSLKVLKVNKSI-SLE-QLQRLLVRA------PQLEELGTGSFLQDLTARPYADLES--AFNNCKNIHTLSGLWEAVPLY 294 (585)
Q Consensus 225 ~~L~~L~l~~~~-~~~-~~~~~~~~~------~~L~~L~l~~~~~~~~~~~~~~l~~--~~~~~~~L~~l~~~~~~~~~~ 294 (585)
++|+.|++++|. ... .++..+..+ ++|++|++..+... .++. .+..+++|+.|....+.-.+.
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-------~ip~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-------TFPVETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-------SCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-------ccCchhhhccCCCCCEEeCcCCcCccc
Confidence 788888888776 333 466666665 77888888775332 2222 344556666665222211112
Q ss_pred HHHHhhcCCCCcEEEecccccCChhHHHHHhcCCC-CcEEEecccCChhhHHHHHhc--CCCCcEEEecCCCCCchhhcc
Q 007916 295 LPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPR-LRRLWVLDTVEDKGLEAVGSN--CPLLEELRVFPADPFDEEIIH 371 (585)
Q Consensus 295 l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~~~~l~~~~~~--~~~L~~L~l~~~~~~~~~~~~ 371 (585)
++ .+..+++|++|++++|.+. .++..+..+++ |+.|+++++... .++..+.. +++|+.|++++|.
T Consensus 346 ip-~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~-------- 413 (636)
T 4eco_A 346 LP-AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNE-------- 413 (636)
T ss_dssp CC-CCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSC--------
T ss_pred hh-hhCCCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCc--------
Confidence 33 3455677788888777654 23333556677 888887765322 23322222 2367777777764
Q ss_pred ccChhhHHHHH------hcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHH---H
Q 007916 372 GVTEEGFVAVS------FGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAV---V 442 (585)
Q Consensus 372 ~~~~~~~~~~~------~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~---~ 442 (585)
++......+. ..+++|++|+++.+.++. ....+...+++|++|++++|... .+. ...+... .
T Consensus 414 -l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~---~i~----~~~~~~~~~~~ 484 (636)
T 4eco_A 414 -IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLT---EIP----KNSLKDENENF 484 (636)
T ss_dssp -TTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCS---BCC----SSSSEETTEEC
T ss_pred -CCCcchhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCC---CcC----HHHhccccccc
Confidence 2211100111 024567777777777762 22334445777888887765431 111 0000000 1
Q ss_pred hcCCCCcEEEccc-CCChhHHHHHh-hcCccccceecccccCChHHHHHHHhcCCCccEEEecC------CCCChHHHHH
Q 007916 443 KTCSKLQRLSVSG-LLTDLTFEYIG-KYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRD------CPFGNEALLS 514 (585)
Q Consensus 443 ~~~~~L~~L~l~~-~~~~~~~~~l~-~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~------~~~~~~~l~~ 514 (585)
.++++|+.|++++ .++ .....+. ..+++|+.|++++|.++. +...+..+++|+.|++++ |.+... ++.
T Consensus 485 ~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~-~p~ 560 (636)
T 4eco_A 485 KNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE-WPE 560 (636)
T ss_dssp TTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCC-CCT
T ss_pred cccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCccccc-ChH
Confidence 1223677777766 444 1112222 256777777777777654 433445677777777743 333221 334
Q ss_pred HHhcCcCCcEEEcccccc
Q 007916 515 GLEKYESMRSLWMSACNV 532 (585)
Q Consensus 515 ~~~~l~~L~~L~l~~~~i 532 (585)
.+..+++|++|+|++|++
T Consensus 561 ~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 561 GITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp TGGGCSSCCEEECCSSCC
T ss_pred HHhcCCCCCEEECCCCcC
Confidence 456677777777777775
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=1.1e-23 Score=222.80 Aligned_cols=224 Identities=15% Similarity=0.083 Sum_probs=127.8
Q ss_pred cCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhh-HH
Q 007916 301 SCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEG-FV 379 (585)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~ 379 (585)
.+++|++|++++|.+.. ++.+ .+++|+.|++.++...... ....+++|+.|+++++. ++..+ ..
T Consensus 305 ~~~~L~~L~l~~n~l~~--lp~~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~---------l~~~~~~~ 369 (606)
T 3vq2_A 305 KHFKWQSLSIIRCQLKQ--FPTL--DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNA---------LSFSGCCS 369 (606)
T ss_dssp TTCCCSEEEEESCCCSS--CCCC--CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSC---------EEEEEECC
T ss_pred ccccCCEEEcccccCcc--cccC--CCCccceeeccCCcCccch--hhccCCCCCEEECcCCc---------cCCCcchh
Confidence 34455555555555421 2222 4555666655544111111 12345566666666543 22111 01
Q ss_pred HHHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHH-HHHhcCCCCcEEEccc-CC
Q 007916 380 AVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFG-AVVKTCSKLQRLSVSG-LL 457 (585)
Q Consensus 380 ~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~-~~~~~~~~L~~L~l~~-~~ 457 (585)
.....+++|+.|+++.+.++... .....+++|+.|++++|.. ++ ... ..+..+++|+.|++++ .+
T Consensus 370 ~~~~~~~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~l~~n~l------~~-----~~~~~~~~~l~~L~~L~l~~n~l 436 (606)
T 3vq2_A 370 YSDLGTNSLRHLDLSFNGAIIMS--ANFMGLEELQHLDFQHSTL------KR-----VTEFSAFLSLEKLLYLDISYTNT 436 (606)
T ss_dssp HHHHCCSCCCEEECCSCSEEEEC--CCCTTCTTCCEEECTTSEE------ES-----TTTTTTTTTCTTCCEEECTTSCC
T ss_pred hhhccCCcccEeECCCCccccch--hhccCCCCCCeeECCCCcc------CC-----ccChhhhhccccCCEEECcCCCC
Confidence 11224667777766655554321 1122567777777775532 21 001 1245678899999987 44
Q ss_pred ChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccCHHHH
Q 007916 458 TDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMNAC 537 (585)
Q Consensus 458 ~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it~~~~ 537 (585)
+......+. .+++|+.|++++|.+++..+...+..+++|++|++++|.++.. .+..+..+++|++|++++|+++....
T Consensus 437 ~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~ 514 (606)
T 3vq2_A 437 KIDFDGIFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI-SWGVFDTLHRLQLLNMSHNNLLFLDS 514 (606)
T ss_dssp EECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCSCEEG
T ss_pred Cccchhhhc-CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCcc-ChhhhcccccCCEEECCCCcCCCcCH
Confidence 443333333 7889999999999887643444567889999999999998543 23456788999999999999765322
Q ss_pred HHHHhhCCCCcEEEeccC
Q 007916 538 RRLAKQMPRLNVEVMKED 555 (585)
Q Consensus 538 ~~~~~~~p~l~~~~~~~~ 555 (585)
..+ ..++++..-.+...
T Consensus 515 ~~~-~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 515 SHY-NQLYSLSTLDCSFN 531 (606)
T ss_dssp GGT-TTCTTCCEEECTTS
T ss_pred HHc-cCCCcCCEEECCCC
Confidence 222 34566655444443
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.85 E-value=4.1e-21 Score=195.64 Aligned_cols=337 Identities=16% Similarity=0.168 Sum_probs=237.3
Q ss_pred CCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCC
Q 007916 118 YPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESF 197 (585)
Q Consensus 118 ~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 197 (585)
++++++|++.++.++. +..+ ..+++|++|++++|. ++.. +. +..+++|++|++++|.+.+... ...+
T Consensus 45 l~~l~~L~l~~~~i~~--l~~~-~~l~~L~~L~Ls~n~-l~~~--~~-~~~l~~L~~L~l~~n~l~~~~~------~~~l 111 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS--IDGV-EYLNNLTQINFSNNQ-LTDI--TP-LKNLTKLVDILMNNNQIADITP------LANL 111 (466)
T ss_dssp HHTCCEEECCSSCCCC--CTTG-GGCTTCCEEECCSSC-CCCC--GG-GTTCTTCCEEECCSSCCCCCGG------GTTC
T ss_pred hccccEEecCCCCCcc--Ccch-hhhcCCCEEECCCCc-cCCc--hh-hhccccCCEEECCCCccccChh------hcCC
Confidence 4678899998886654 2233 348899999999875 4322 12 5688999999999998776432 3578
Q ss_pred CCcCEEEeccCCCCCChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhCCccccccCcccccccCCCchhhHHHHhhc
Q 007916 198 TSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFNN 277 (585)
Q Consensus 198 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~ 277 (585)
++|++|+++++...--.. +..+++|++|++++|.. ..++ .+..+++|+.|.+...
T Consensus 112 ~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~n~l-~~~~-~~~~l~~L~~L~l~~~------------------ 166 (466)
T 1o6v_A 112 TNLTGLTLFNNQITDIDP-----LKNLTNLNRLELSSNTI-SDIS-ALSGLTSLQQLSFGNQ------------------ 166 (466)
T ss_dssp TTCCEEECCSSCCCCCGG-----GTTCTTCSEEEEEEEEE-CCCG-GGTTCTTCSEEEEEES------------------
T ss_pred CCCCEEECCCCCCCCChH-----HcCCCCCCEEECCCCcc-CCCh-hhccCCcccEeecCCc------------------
Confidence 899999998875332222 67789999999988752 2222 2566677777766421
Q ss_pred CCcccccccccccCcCCHHHHhhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEE
Q 007916 278 CKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEEL 357 (585)
Q Consensus 278 ~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L 357 (585)
. ..+. .+..+++|++|++++|.+.... .+..+++|+.|++.++....... ...+++|+.|
T Consensus 167 ------------~--~~~~-~~~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 226 (466)
T 1o6v_A 167 ------------V--TDLK-PLANLTTLERLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITP--LGILTNLDEL 226 (466)
T ss_dssp ------------C--CCCG-GGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEE
T ss_pred ------------c--cCch-hhccCCCCCEEECcCCcCCCCh---hhccCCCCCEEEecCCccccccc--ccccCCCCEE
Confidence 0 1111 1567899999999999865532 26789999999999863222211 4678999999
Q ss_pred EecCCCCCchhhccccChhhHHHHHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhh
Q 007916 358 RVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEA 437 (585)
Q Consensus 358 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~ 437 (585)
+++++. ++..+ . ...+++|+.|+++.+.+++... ...+++|++|++++|. +++.+
T Consensus 227 ~l~~n~---------l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~------l~~~~---- 281 (466)
T 1o6v_A 227 SLNGNQ---------LKDIG--T-LASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQ------ISNIS---- 281 (466)
T ss_dssp ECCSSC---------CCCCG--G-GGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSC------CCCCG----
T ss_pred ECCCCC---------cccch--h-hhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCCc------cCccc----
Confidence 999975 33321 1 2358999999888888875432 3488999999999764 33211
Q ss_pred HHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHH
Q 007916 438 FGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGL 516 (585)
Q Consensus 438 l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~ 516 (585)
. ...+++|+.|++++ .+++... +. .+++|+.|++++|.+++... +..+++|+.|++++|.+++. ..+
T Consensus 282 --~-~~~l~~L~~L~L~~n~l~~~~~--~~-~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~---~~l 349 (466)
T 1o6v_A 282 --P-LAGLTALTNLELNENQLEDISP--IS-NLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV---SSL 349 (466)
T ss_dssp --G-GTTCTTCSEEECCSSCCSCCGG--GG-GCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC---GGG
T ss_pred --c-ccCCCccCeEEcCCCcccCchh--hc-CCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCc---hhh
Confidence 1 55789999999988 5544322 33 78999999999999876432 57899999999999999654 346
Q ss_pred hcCcCCcEEEccccccCHHHHHHHHhhCCCCcEEEe
Q 007916 517 EKYESMRSLWMSACNVTMNACRRLAKQMPRLNVEVM 552 (585)
Q Consensus 517 ~~l~~L~~L~l~~~~it~~~~~~~~~~~p~l~~~~~ 552 (585)
..+++|+.|++++|+++.... ...+|++..-.+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l 382 (466)
T 1o6v_A 350 ANLTNINWLSAGHNQISDLTP---LANLTRITQLGL 382 (466)
T ss_dssp TTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEEC
T ss_pred ccCCCCCEEeCCCCccCccch---hhcCCCCCEEec
Confidence 789999999999999765332 356677654333
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=3.1e-23 Score=222.53 Aligned_cols=333 Identities=12% Similarity=0.114 Sum_probs=193.3
Q ss_pred HHHHHHhCCCCCEEEcccCCCCccc--ccc-----------cccccc--CCCCcCEEEeccCC--CCCChHHHHHHHhcC
Q 007916 162 LAAIATHCKNLTELDIQENGIEDSS--GSW-----------LSCFPE--SFTSLEVLNFANLT--SEVNTDALERLVSRC 224 (585)
Q Consensus 162 l~~~~~~~~~L~~L~L~~~~~~~~~--~~~-----------l~~~~~--~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~ 224 (585)
++..+.++++|++|+|++|.+++.. ..+ +..... .+++|+.|+++++. ..++.. +..+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-----l~~L 514 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-----LYDL 514 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-----GGGC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-----HhCC
Confidence 3444567888888888888877620 000 111113 67888888888764 224544 6778
Q ss_pred CCCcEEEecCCc-chh-HHHHHHHhCC-------ccccccCcccccccCCCchhhHHH--HhhcCCcccccccccccCcC
Q 007916 225 KSLKVLKVNKSI-SLE-QLQRLLVRAP-------QLEELGTGSFLQDLTARPYADLES--AFNNCKNIHTLSGLWEAVPL 293 (585)
Q Consensus 225 ~~L~~L~l~~~~-~~~-~~~~~~~~~~-------~L~~L~l~~~~~~~~~~~~~~l~~--~~~~~~~L~~l~~~~~~~~~ 293 (585)
++|+.|++++|. ... .+|..+..++ +|+.|++..+... .++. .+..+++|+.|....+.-.
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-------~ip~~~~l~~L~~L~~L~Ls~N~l~- 586 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-------EFPASASLQKMVKLGLLDCVHNKVR- 586 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-------BCCCHHHHTTCTTCCEEECTTSCCC-
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-------ccCChhhhhcCCCCCEEECCCCCcc-
Confidence 888888888886 333 4666666554 8888888876433 2222 3445666666662221111
Q ss_pred CHHHHhhcCCCCcEEEecccccCChhHHHHHhcCCC-CcEEEecccCChhhHHHHHhcC--CCCcEEEecCCCCCchhhc
Q 007916 294 YLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPR-LRRLWVLDTVEDKGLEAVGSNC--PLLEELRVFPADPFDEEII 370 (585)
Q Consensus 294 ~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~~~~l~~~~~~~--~~L~~L~l~~~~~~~~~~~ 370 (585)
.++ .+..+++|+.|++++|.+. .++..+..+++ |+.|+++++... .++..+... ++|+.|++++|.
T Consensus 587 ~lp-~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~------- 655 (876)
T 4ecn_A 587 HLE-AFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNK------- 655 (876)
T ss_dssp BCC-CCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSC-------
T ss_pred cch-hhcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCc-------
Confidence 333 4566778888888888765 24444566677 888888766322 333332223 248888888764
Q ss_pred cccChhh--HH-HH-HhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHH---HHh
Q 007916 371 HGVTEEG--FV-AV-SFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGA---VVK 443 (585)
Q Consensus 371 ~~~~~~~--~~-~~-~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~---~~~ 443 (585)
+.... +. .+ ...+++|+.|+++.+.++ .....+...+++|+.|++++|.. +..+ ...+.. ...
T Consensus 656 --l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L------~~ip-~~~~~~~~~~l~ 725 (876)
T 4ecn_A 656 --IGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLM------TSIP-ENSLKPKDGNYK 725 (876)
T ss_dssp --TTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCC------SCCC-TTSSSCTTSCCT
T ss_pred --CCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcC------CccC-hHHhcccccccc
Confidence 21100 00 00 002347888877777776 23334444678888888886643 2111 000000 012
Q ss_pred cCCCCcEEEccc-CCChhHHHHHh-hcCccccceecccccCChHHHHHHHhcCCCccEEEecC------CCCChHHHHHH
Q 007916 444 TCSKLQRLSVSG-LLTDLTFEYIG-KYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRD------CPFGNEALLSG 515 (585)
Q Consensus 444 ~~~~L~~L~l~~-~~~~~~~~~l~-~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~------~~~~~~~l~~~ 515 (585)
+|++|+.|++++ .++ .....+. ..+++|+.|+|++|.++. +...+..+++|+.|++++ |.+... ++..
T Consensus 726 nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~-ip~~ 801 (876)
T 4ecn_A 726 NTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ-WPTG 801 (876)
T ss_dssp TGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCC-CCTT
T ss_pred ccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc--cchhhhcCCCCCEEECCCCCCccccccccc-ChHH
Confidence 334788888876 444 1122222 256788888888887765 444456778888888866 433221 3345
Q ss_pred HhcCcCCcEEEcccccc
Q 007916 516 LEKYESMRSLWMSACNV 532 (585)
Q Consensus 516 ~~~l~~L~~L~l~~~~i 532 (585)
+..+++|++|+|++|++
T Consensus 802 l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 802 ITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp GGGCSSCCEEECCSSCC
T ss_pred HhcCCCCCEEECCCCCC
Confidence 56778888888888876
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=7.6e-24 Score=222.41 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=69.4
Q ss_pred HHhhCCCccEEEecCCCCcccCccCCCCCCCchHHHHHHHHhhCCCCcEEEecccccChHHHHHHHhhCCCccEEEecCC
Q 007916 75 LTRRFPNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSC 154 (585)
Q Consensus 75 l~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~ 154 (585)
.+..+++|+.|++.++. +.... + .....+++|++|+++++.++......+.. +++|++|+++++
T Consensus 47 ~~~~l~~L~~L~Ls~n~-i~~i~--~------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n 110 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCE-IQTIE--D------------GAYQSLSHLSTLILTGNPIQSLALGAFSG-LSSLQKLVAVET 110 (570)
T ss_dssp TTTTCSSCCEEECTTCC-CCEEC--T------------TTTTTCTTCCEEECTTCCCCEECTTTTTT-CTTCCEEECTTS
T ss_pred HhhCCCCceEEECCCCc-CCccC--c------------ccccCchhCCEEeCcCCcCCccCHhhhcC-cccccccccccc
Confidence 44667888888888763 22110 0 11235788888888888766533233333 778888888876
Q ss_pred CCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCCCcCEEEeccCC
Q 007916 155 DGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLT 209 (585)
Q Consensus 155 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 209 (585)
. ++.... ..+..+++|++|++++|.++... +......+++|++|+++++.
T Consensus 111 ~-l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~---lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 111 N-LASLEN-FPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp C-CCCSTT-CSCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECTTSC
T ss_pred c-cccCCC-ccccccccccEEecCCCccceec---ChhhhcccCCCCEEeCcCCc
Confidence 4 321110 01357888888888888776532 11222467888888888765
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=1.5e-19 Score=176.97 Aligned_cols=305 Identities=18% Similarity=0.183 Sum_probs=211.6
Q ss_pred hhCCCccEEEecCCCCcccCccCCCCCCCchHHHHHHHHhhCCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCC
Q 007916 77 RRFPNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDG 156 (585)
Q Consensus 77 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~ 156 (585)
..+++++.+++.++.- .+. +. ...+++|++|+++++.+++... ...+++|++|++++|.
T Consensus 41 ~~l~~L~~L~l~~~~i-~~~---------------~~-~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~- 99 (347)
T 4fmz_A 41 EELESITKLVVAGEKV-ASI---------------QG-IEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNK- 99 (347)
T ss_dssp HHHTTCSEEECCSSCC-CCC---------------TT-GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-
T ss_pred hhcccccEEEEeCCcc-ccc---------------hh-hhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCc-
Confidence 4678899999987642 111 11 2368999999999997776332 4458999999999975
Q ss_pred CCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCCCcCEEEeccCCCCCChHHHHHHHhcCCCCcEEEecCCc
Q 007916 157 FSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSI 236 (585)
Q Consensus 157 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 236 (585)
++. ++ .+..+++|++|++++|.+++.+. ...+++|+.|+++++........ +..+++|++|++++|.
T Consensus 100 i~~--~~-~~~~l~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~l~~n~~~~~~~~----~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 100 ITD--IS-ALQNLTNLRELYLNEDNISDISP------LANLTKMYSLNLGANHNLSDLSP----LSNMTGLNYLTVTESK 166 (347)
T ss_dssp CCC--CG-GGTTCTTCSEEECTTSCCCCCGG------GTTCTTCCEEECTTCTTCCCCGG----GTTCTTCCEEECCSSC
T ss_pred ccC--ch-HHcCCCcCCEEECcCCcccCchh------hccCCceeEEECCCCCCcccccc----hhhCCCCcEEEecCCC
Confidence 433 22 25689999999999998876532 35789999999998843222221 6788999999999886
Q ss_pred chhHHHHHHHhCCccccccCcccccccCCCchhhHHHHhhcCCcccccccccccCcCCHHHHhhcCCCCcEEEecccccC
Q 007916 237 SLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQ 316 (585)
Q Consensus 237 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 316 (585)
.... +. +..+++|++|++.++... .++. +..+++|+.|+++++.+.
T Consensus 167 ~~~~-~~-~~~l~~L~~L~l~~n~l~-------------------------------~~~~-~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 167 VKDV-TP-IANLTDLYSLSLNYNQIE-------------------------------DISP-LASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp CCCC-GG-GGGCTTCSEEECTTSCCC-------------------------------CCGG-GGGCTTCCEEECCSSCCC
T ss_pred cCCc-hh-hccCCCCCEEEccCCccc-------------------------------cccc-ccCCCccceeecccCCCC
Confidence 3322 22 778899999998764221 1111 466899999999999865
Q ss_pred ChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHHHHHhcCccchhhhccCC
Q 007916 317 SGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCR 396 (585)
Q Consensus 317 ~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~ 396 (585)
.... +..+++|+.|++.++..... .. +..+++|+.|++++|. ++..
T Consensus 213 ~~~~---~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~---------l~~~-------------------- 258 (347)
T 4fmz_A 213 DITP---VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQ---------ISDI-------------------- 258 (347)
T ss_dssp CCGG---GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSC---------CCCC--------------------
T ss_pred CCch---hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCc---------cCCC--------------------
Confidence 5422 56778888888877522111 11 4566777777777653 2211
Q ss_pred CCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccce
Q 007916 397 QMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETL 475 (585)
Q Consensus 397 ~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L 475 (585)
.. ...+++|++|++++|. +++. ..+..+++|+.|++++ .+++.....++ .+++|+.|
T Consensus 259 -------~~-~~~l~~L~~L~l~~n~------l~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L 316 (347)
T 4fmz_A 259 -------NA-VKDLTKLKMLNVGSNQ------ISDI-------SVLNNLSQLNSLFLNNNQLGNEDMEVIG-GLTNLTTL 316 (347)
T ss_dssp -------GG-GTTCTTCCEEECCSSC------CCCC-------GGGGGCTTCSEEECCSSCCCGGGHHHHH-TCTTCSEE
T ss_pred -------hh-HhcCCCcCEEEccCCc------cCCC-------hhhcCCCCCCEEECcCCcCCCcChhHhh-ccccCCEE
Confidence 01 1267888888888664 3321 1245778999999988 77777777666 78999999
Q ss_pred ecccccCChHHHHHHHhcCCCccEEEecCCCCC
Q 007916 476 SVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFG 508 (585)
Q Consensus 476 ~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~ 508 (585)
++++|++++. .. +..+++|++|++++|+++
T Consensus 317 ~L~~n~l~~~--~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 317 FLSQNHITDI--RP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ECCSSSCCCC--GG-GGGCTTCSEESSSCC---
T ss_pred EccCCccccc--cC-hhhhhccceeehhhhccc
Confidence 9999998763 22 578999999999999873
No 26
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=1.5e-19 Score=179.35 Aligned_cols=210 Identities=15% Similarity=0.169 Sum_probs=126.7
Q ss_pred hhcCCCCcEEEecccccCChh---HHHHHhcCCCCcEEEecccCCh-hh---HHHHHhcC---------CCCcEEEecCC
Q 007916 299 YNSCANLTFLNLSYTALQSGE---FAKLVVHCPRLRRLWVLDTVED-KG---LEAVGSNC---------PLLEELRVFPA 362 (585)
Q Consensus 299 ~~~~~~L~~L~l~~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~~-~~---l~~~~~~~---------~~L~~L~l~~~ 362 (585)
+..+++|++|++++|.+...+ ++..+..+++|++|++++|... .+ +...+..+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 345677777777777655532 3334455666666666554221 11 11112222 55555555554
Q ss_pred CCCchhhccccChhhHHHHHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHH-
Q 007916 363 DPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAV- 441 (585)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~- 441 (585)
. +++.++..++ .....+++|++|++++| .++ +.++..+
T Consensus 170 ~---------l~~~~~~~l~----------------------~~l~~~~~L~~L~L~~n------~l~----~~g~~~l~ 208 (386)
T 2ca6_A 170 R---------LENGSMKEWA----------------------KTFQSHRLLHTVKMVQN------GIR----PEGIEHLL 208 (386)
T ss_dssp C---------CTGGGHHHHH----------------------HHHHHCTTCCEEECCSS------CCC----HHHHHHHH
T ss_pred C---------CCcHHHHHHH----------------------HHHHhCCCcCEEECcCC------CCC----HhHHHHHH
Confidence 3 3333332211 12225667777777654 344 4443333
Q ss_pred ---HhcCCCCcEEEccc-CCChhHHHHHh---hcCccccceecccccCChHHHHHHHhc-----CCCccEEEecCCCCCh
Q 007916 442 ---VKTCSKLQRLSVSG-LLTDLTFEYIG---KYAKNLETLSVAFAGRSDRGMQCVLEG-----CPKLRKLEIRDCPFGN 509 (585)
Q Consensus 442 ---~~~~~~L~~L~l~~-~~~~~~~~~l~---~~~~~L~~L~l~~~~i~~~~l~~l~~~-----~~~L~~L~l~~~~~~~ 509 (585)
+..+++|+.|++++ .+++.+...+. ..+++|+.|++++|.+++.+...+... +++|++|++++|.+++
T Consensus 209 ~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 209 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 34667788888877 66655554443 367889999999998888766654432 7889999999999877
Q ss_pred HH---HHHHH-hcCcCCcEEEccccccCHHH--HHHHHhhCCCCcE
Q 007916 510 EA---LLSGL-EKYESMRSLWMSACNVTMNA--CRRLAKQMPRLNV 549 (585)
Q Consensus 510 ~~---l~~~~-~~l~~L~~L~l~~~~it~~~--~~~~~~~~p~l~~ 549 (585)
.+ ++..+ .++++|+.|++++|+++..+ +..+...+|.+++
T Consensus 289 ~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~ 334 (386)
T 2ca6_A 289 DAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGR 334 (386)
T ss_dssp HHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCc
Confidence 43 33444 56799999999999987766 5777777766544
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=4.8e-22 Score=202.45 Aligned_cols=364 Identities=10% Similarity=0.072 Sum_probs=230.5
Q ss_pred CCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCC
Q 007916 119 PFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFT 198 (585)
Q Consensus 119 ~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~ 198 (585)
++|++|+++++.+++.....+.. +++|++|+++++. +.....+..+..+++|++|++++|.++...... ...++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~L~~n~-~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~ 103 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSR-LQDLQFLKVEQQT-PGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA----FNGLA 103 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSS-CTTCCEEECCCCS-TTCEECTTTTTTCTTCCEEECTTCTTCEECTTT----TTTCT
T ss_pred CccCEEEecCCccCcCChhHhcc-CccccEEECcCCc-ccceECcccccccccCCEEeCCCCccCccChhh----ccCcc
Confidence 68999999999777643333443 7899999999875 211111233457899999999999887653222 25788
Q ss_pred CcCEEEeccCCCCCChHHHH-HHHhcCCCCcEEEecCCcchhHHHH-HHHhCCccccccCcccccccCCCchhhHHHHhh
Q 007916 199 SLEVLNFANLTSEVNTDALE-RLVSRCKSLKVLKVNKSISLEQLQR-LLVRAPQLEELGTGSFLQDLTARPYADLESAFN 276 (585)
Q Consensus 199 ~L~~L~l~~~~~~~~~~~l~-~l~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 276 (585)
+|++|+++++. +...... ..+..+++|++|++++|......+. .+..+++|++|++..+....
T Consensus 104 ~L~~L~L~~n~--l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~------------- 168 (455)
T 3v47_A 104 NLEVLTLTQCN--LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS------------- 168 (455)
T ss_dssp TCCEEECTTSC--CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC-------------
T ss_pred cCCEEeCCCCC--CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc-------------
Confidence 99999999875 4332221 1256788999999998864333233 36788888888887652221
Q ss_pred cCCcccccccccccCcCCHHHHhhcCCCCcEEEecccccCChhH---H----HHHhcCCCCcEEEecccCChhhHHHHHh
Q 007916 277 NCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEF---A----KLVVHCPRLRRLWVLDTVEDKGLEAVGS 349 (585)
Q Consensus 277 ~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l---~----~~~~~~~~L~~L~l~~~~~~~~l~~~~~ 349 (585)
.....+.. ....+|+.|+++++.+..... . ..+..+++|+.|+++++.........+.
T Consensus 169 -------------~~~~~l~~--l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 233 (455)
T 3v47_A 169 -------------ICEEDLLN--FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFF 233 (455)
T ss_dssp -------------CCTTTSGG--GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHH
T ss_pred -------------cChhhhhc--cccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhh
Confidence 00011111 113678899998887443210 0 0122457899999988744333333322
Q ss_pred ---cCCCCcEEEecCCCCCchh--hccccChhhHHHHH-hcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCC
Q 007916 350 ---NCPLLEELRVFPADPFDEE--IIHGVTEEGFVAVS-FGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTP 423 (585)
Q Consensus 350 ---~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~ 423 (585)
..++|+.|++.++...... ... +.+.....+. -..++|+.|++..+.+++.....+ ..+++|++|++++|..
T Consensus 234 ~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l 311 (455)
T 3v47_A 234 DAIAGTKIQSLILSNSYNMGSSFGHTN-FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF-SHFTDLEQLTLAQNEI 311 (455)
T ss_dssp HHTTTCCEEEEECTTCTTTSCCTTCCS-SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT-TTCTTCCEEECTTSCC
T ss_pred ccccccceeeEeeccccccccccchhh-hccCcccccccccccCceEEEecCccccccchhhc-ccCCCCCEEECCCCcc
Confidence 2378999999876411110 000 0000000000 124689999888888875433333 3789999999997653
Q ss_pred CCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEe
Q 007916 424 GLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEI 502 (585)
Q Consensus 424 ~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l 502 (585)
++ .....+..+++|+.|++++ .++......+. .+++|+.|++++|.+++... ..+..+++|++|++
T Consensus 312 ------~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L 378 (455)
T 3v47_A 312 ------NK-----IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE-NLDKLEVLDLSYNHIRALGD-QSFLGLPNLKELAL 378 (455)
T ss_dssp ------CE-----ECTTTTTTCTTCCEEECCSSCCCEECGGGGT-TCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEEC
T ss_pred ------cc-----cChhHhcCcccCCEEECCCCccCCcChhHhc-CcccCCEEECCCCcccccCh-hhccccccccEEEC
Confidence 31 1111245689999999988 55544333333 78999999999999865422 23477899999999
Q ss_pred cCCCCChHHHHHHHhcCcCCcEEEccccccCH
Q 007916 503 RDCPFGNEALLSGLEKYESMRSLWMSACNVTM 534 (585)
Q Consensus 503 ~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it~ 534 (585)
++|.++... ...+..+++|++|+|++|+++.
T Consensus 379 ~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 379 DTNQLKSVP-DGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CSSCCSCCC-TTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCccccCC-HhHhccCCcccEEEccCCCccc
Confidence 999985432 2345788999999999999654
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=3.2e-22 Score=214.35 Aligned_cols=65 Identities=15% Similarity=0.111 Sum_probs=36.5
Q ss_pred CccccceecccccCChH-HHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccCH
Q 007916 469 AKNLETLSVAFAGRSDR-GMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTM 534 (585)
Q Consensus 469 ~~~L~~L~l~~~~i~~~-~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it~ 534 (585)
+++|+.|++++|.++.. .+...+..+++|+.|++++|.++.. .+..+..+++|++|++++|+++.
T Consensus 453 ~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI-NDDMLEGLEKLEILDLQHNNLAR 518 (680)
T ss_dssp CTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCGG
T ss_pred CcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcC-ChhhhccccccCEEeCCCCCccc
Confidence 34444444444443211 1122245577788888887776432 11335677788888888887653
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=5e-23 Score=224.90 Aligned_cols=62 Identities=13% Similarity=0.074 Sum_probs=29.0
Q ss_pred hcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCC
Q 007916 300 NSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPA 362 (585)
Q Consensus 300 ~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~ 362 (585)
..+++|+.|++++|.+... .+..+..+++|+.|+++++.........+..+++|+.|++++|
T Consensus 287 ~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 348 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKINKI-ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348 (844)
T ss_dssp SSCCCCCEEEEESCCCCEE-CTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSC
T ss_pred hcCCCCCEEECCCCcCCCC-ChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCC
Confidence 4455666666666554322 1122344556666666554222111222334555666666554
No 30
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.81 E-value=6.7e-23 Score=216.37 Aligned_cols=345 Identities=10% Similarity=0.045 Sum_probs=224.2
Q ss_pred hCCCccEEEecCCCCCCHH----------------HHHHHHH--hCCCCCEEEcccCCCCccccccccccccCCCCcCEE
Q 007916 142 NFPNFKLLSLLSCDGFSTD----------------GLAAIAT--HCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVL 203 (585)
Q Consensus 142 ~~~~L~~L~l~~~~~~~~~----------------~l~~~~~--~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L 203 (585)
.+++|++|+++++. ++.. .++..+. ++++|++|++++|.+.+... .....+++|++|
T Consensus 204 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L 278 (636)
T 4eco_A 204 RLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP----TFLKALPEMQLI 278 (636)
T ss_dssp GCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC----TTTTTCSSCCEE
T ss_pred cccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh----HHHhcCCCCCEE
Confidence 37889999999876 5431 1454455 78999999999997665422 223578899999
Q ss_pred EeccCCCCCChHHHHHHHhc------CCCCcEEEecCCcchhHHHH--HHHhCCccccccCcccccccCCCchhhHHHHh
Q 007916 204 NFANLTSEVNTDALERLVSR------CKSLKVLKVNKSISLEQLQR--LLVRAPQLEELGTGSFLQDLTARPYADLESAF 275 (585)
Q Consensus 204 ~l~~~~~~~~~~~l~~l~~~------~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~ 275 (585)
+++++.. ++...+..-+.. +++|++|++++|... .++. .+..+++|+.|++..+.... .++ .+
T Consensus 279 ~Ls~n~~-l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g------~ip-~~ 349 (636)
T 4eco_A 279 NVACNRG-ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEG------KLP-AF 349 (636)
T ss_dssp ECTTCTT-SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEE------ECC-CC
T ss_pred ECcCCCC-CccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCcc------chh-hh
Confidence 9988741 333122222333 489999999988654 6766 88899999999998864330 222 33
Q ss_pred hcCCcccccccccccCcCCHHHHhhcCCC-CcEEEecccccCChhHHHHHhc--CCCCcEEEecccCChhhHHHHHh---
Q 007916 276 NNCKNIHTLSGLWEAVPLYLPALYNSCAN-LTFLNLSYTALQSGEFAKLVVH--CPRLRRLWVLDTVEDKGLEAVGS--- 349 (585)
Q Consensus 276 ~~~~~L~~l~~~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~~~~~l~~~~~~--~~~L~~L~l~~~~~~~~l~~~~~--- 349 (585)
..+++|+.|....+.-. .++..+..+++ |++|++++|.+.. ++..+.. +++|+.|+++++......+..+.
T Consensus 350 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~ 426 (636)
T 4eco_A 350 GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKY--IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426 (636)
T ss_dssp EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSS--CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcc--cchhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence 45566776662221111 34444667788 9999999998662 3333333 34899999998744333332223
Q ss_pred ----cCCCCcEEEecCCCCCchhhccccChhhHHHHHhcCccchhhhccCCCCCHHHHHHHHHh-------CCCCceEEe
Q 007916 350 ----NCPLLEELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQN-------CPNFTHFRL 418 (585)
Q Consensus 350 ----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~-------~~~L~~L~l 418 (585)
.+++|+.|++++|. ++.... .+...+++|+.|+++.+.++. ........ +++|+.|++
T Consensus 427 ~~~~~~~~L~~L~Ls~N~---------l~~lp~-~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~~~~~~~~l~~L~~L~L 495 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQ---------ISKFPK-ELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYLLTSIDL 495 (636)
T ss_dssp SSCCCCCCEEEEECCSSC---------CCSCCT-HHHHTTCCCSEEECCSSCCSB-CCSSSSEETTEECTTGGGCCEEEC
T ss_pred cccccCCCCCEEECcCCc---------cCcCCH-HHHccCCCCCEEECCCCCCCC-cCHHHhccccccccccCCccEEEC
Confidence 55689999999975 332111 233458999999888888872 11111111 228999999
Q ss_pred eccCCCCCCCCCCCcchhhHHHHH--hcCCCCcEEEccc-CCChhHHHHHhhcCccccceeccc------ccCChHHHHH
Q 007916 419 CIMTPGLPDYLTNEPMDEAFGAVV--KTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAF------AGRSDRGMQC 489 (585)
Q Consensus 419 ~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~------~~i~~~~l~~ 489 (585)
++|.. +..+ ..+ ..+++|+.|++++ .++. ....+. .+++|+.|++++ |.+... +..
T Consensus 496 s~N~l------~~lp------~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~-~l~~L~~L~Ls~N~~ls~N~l~~~-~p~ 560 (636)
T 4eco_A 496 RFNKL------TKLS------DDFRATTLPYLVGIDLSYNSFSK-FPTQPL-NSSTLKGFGIRNQRDAQGNRTLRE-WPE 560 (636)
T ss_dssp CSSCC------CBCC------GGGSTTTCTTCCEEECCSSCCSS-CCCGGG-GCSSCCEEECCSCBCTTCCBCCCC-CCT
T ss_pred cCCcC------CccC------hhhhhccCCCcCEEECCCCCCCC-cChhhh-cCCCCCEEECCCCcccccCccccc-ChH
Confidence 97654 3211 123 3789999999988 5554 333344 689999999954 444322 333
Q ss_pred HHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccC
Q 007916 490 VLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVT 533 (585)
Q Consensus 490 l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it 533 (585)
.+..+++|++|++++|.++. ++.. -.++|++|+|++|+++
T Consensus 561 ~l~~l~~L~~L~Ls~N~l~~--ip~~--~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 561 GITLCPSLTQLQIGSNDIRK--VNEK--ITPNISVLDIKDNPNI 600 (636)
T ss_dssp TGGGCSSCCEEECCSSCCCB--CCSC--CCTTCCEEECCSCTTC
T ss_pred HHhcCCCCCEEECCCCcCCc--cCHh--HhCcCCEEECcCCCCc
Confidence 45779999999999999843 2222 2289999999999854
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.81 E-value=9.5e-21 Score=188.45 Aligned_cols=324 Identities=15% Similarity=0.108 Sum_probs=204.0
Q ss_pred CCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCC
Q 007916 118 YPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESF 197 (585)
Q Consensus 118 ~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 197 (585)
.++++.|+++++.++.-.. .+...+++|++|+++++. ++.. .+..+..+++|++|++++|.++...... ...+
T Consensus 44 l~~l~~l~l~~~~l~~l~~-~~~~~l~~L~~L~L~~n~-i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l 116 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPA-ALLDSFRQVELLNLNDLQ-IEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHV----FQNV 116 (390)
T ss_dssp GCCCSEEEEESCEESEECT-HHHHHCCCCSEEECTTSC-CCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTC
T ss_pred cCCceEEEecCCchhhCCh-hHhcccccCcEEECCCCc-cccc-ChhhccCCCCcCEEECCCCCCCcCCHHH----hcCC
Confidence 5788888888876554322 222347888888888765 4221 1123457888888888888876643222 2467
Q ss_pred CCcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhCCccccccCcccccccCCCchhhHHHHhh
Q 007916 198 TSLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFN 276 (585)
Q Consensus 198 ~~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 276 (585)
++|++|+++++... ++.. ++..+++|++|++++|......+.
T Consensus 117 ~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~L~~n~l~~~~~~--------------------------------- 159 (390)
T 3o6n_A 117 PLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLERIEDD--------------------------------- 159 (390)
T ss_dssp TTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCBCCTT---------------------------------
T ss_pred CCCCEEECCCCccCcCCHH----HhcCCCCCcEEECCCCccCccChh---------------------------------
Confidence 78888888776533 2222 145677788888877642111111
Q ss_pred cCCcccccccccccCcCCHHHHhhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcE
Q 007916 277 NCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEE 356 (585)
Q Consensus 277 ~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~ 356 (585)
.+..+++|++|++++|.++... ...+++|+.|++.++.... ....++|++
T Consensus 160 ---------------------~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~ 209 (390)
T 3o6n_A 160 ---------------------TFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLST-----LAIPIAVEE 209 (390)
T ss_dssp ---------------------TTSSCTTCCEEECCSSCCSBCC----GGGCTTCSEEECCSSCCSE-----EECCSSCSE
T ss_pred ---------------------hccCCCCCCEEECCCCcCCccc----cccccccceeecccccccc-----cCCCCcceE
Confidence 1234566666666666544432 2445666666666542111 122346777
Q ss_pred EEecCCCCCchhhccccChhhHHHHHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchh
Q 007916 357 LRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDE 436 (585)
Q Consensus 357 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~ 436 (585)
|+++++. +..... ...++|+.|.+..+.+++. . ....+++|++|+++++.. ++
T Consensus 210 L~l~~n~---------l~~~~~----~~~~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~Ls~n~l------~~----- 262 (390)
T 3o6n_A 210 LDASHNS---------INVVRG----PVNVELTILKLQHNNLTDT--A-WLLNYPGLVEVDLSYNEL------EK----- 262 (390)
T ss_dssp EECCSSC---------CCEEEC----CCCSSCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCC------CE-----
T ss_pred EECCCCe---------eeeccc----cccccccEEECCCCCCccc--H-HHcCCCCccEEECCCCcC------CC-----
Confidence 7777654 221110 1246677777777777653 2 234789999999987643 31
Q ss_pred hHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHH
Q 007916 437 AFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSG 515 (585)
Q Consensus 437 ~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~ 515 (585)
.....+..+++|+.|++++ .++.-.. ....+++|+.|++++|.++. +...+..+++|+.|++++|.++...
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~N~i~~~~---- 334 (390)
T 3o6n_A 263 IMYHPFVKMQRLERLYISNNRLVALNL--YGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTLK---- 334 (390)
T ss_dssp EESGGGTTCSSCCEEECCSSCCCEEEC--SSSCCTTCCEEECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCCCC----
T ss_pred cChhHccccccCCEEECCCCcCcccCc--ccCCCCCCCEEECCCCccee--cCccccccCcCCEEECCCCccceeC----
Confidence 1112345678999999987 4443211 11367899999999998764 3323456899999999999996542
Q ss_pred HhcCcCCcEEEccccccCHHHHHHHHhhCCCCcEE
Q 007916 516 LEKYESMRSLWMSACNVTMNACRRLAKQMPRLNVE 550 (585)
Q Consensus 516 ~~~l~~L~~L~l~~~~it~~~~~~~~~~~p~l~~~ 550 (585)
+..+++|++|++++|+++......+...++...+.
T Consensus 335 ~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~ 369 (390)
T 3o6n_A 335 LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVD 369 (390)
T ss_dssp CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBC
T ss_pred chhhccCCEEEcCCCCccchhHHHHHHHHHhhccc
Confidence 56789999999999999998888887777765543
No 32
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=1e-18 Score=170.10 Aligned_cols=206 Identities=16% Similarity=0.222 Sum_probs=117.2
Q ss_pred cCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHHH
Q 007916 301 SCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVA 380 (585)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 380 (585)
.+++|++|++++|.+....++..+..+++|++|++.++.........+..+++|++|++++| .. +++.++..
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~-------~~-l~~~~l~~ 162 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC-------SG-FSEFALQT 162 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC-------BS-CCHHHHHH
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC-------CC-CCHHHHHH
Confidence 46777777777777666556666667777777777665333333333445666666666663 12 44443433
Q ss_pred HHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCC-CCcEEEccc---C
Q 007916 381 VSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCS-KLQRLSVSG---L 456 (585)
Q Consensus 381 ~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~-~L~~L~l~~---~ 456 (585)
+...+++|++|++++|. .++ +.++...+..++ +|++|++++ .
T Consensus 163 -------------------------~~~~~~~L~~L~l~~~~-----~l~----~~~~~~~~~~l~~~L~~L~l~~~~~~ 208 (336)
T 2ast_B 163 -------------------------LLSSCSRLDELNLSWCF-----DFT----EKHVQVAVAHVSETITQLNLSGYRKN 208 (336)
T ss_dssp -------------------------HHHHCTTCCEEECCCCT-----TCC----HHHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred -------------------------HHhcCCCCCEEcCCCCC-----CcC----hHHHHHHHHhcccCCCEEEeCCCccc
Confidence 33345555555554431 233 333444445555 555555544 2
Q ss_pred CChhHHHHHhhcCccccceeccccc-CChHHHHHHHhcCCCccEEEecCCC-CChHHHHHHHhcCcCCcEEEccccccCH
Q 007916 457 LTDLTFEYIGKYAKNLETLSVAFAG-RSDRGMQCVLEGCPKLRKLEIRDCP-FGNEALLSGLEKYESMRSLWMSACNVTM 534 (585)
Q Consensus 457 ~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~l~~~~~~l~~L~~L~l~~~~it~ 534 (585)
+++..+..+...+++|+.|++++|. +++.++.. +..+++|++|++++|. +++.++ ..+.++++|++|++++| +++
T Consensus 209 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~-i~~ 285 (336)
T 2ast_B 209 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFGI-VPD 285 (336)
T ss_dssp SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTS-SCT
T ss_pred CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH-HhCCCCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEEeccCc-cCH
Confidence 4444444444456666666666665 55555543 3556777777777774 355443 33456677777777777 777
Q ss_pred HHHHHHHhhCCCCcEEE
Q 007916 535 NACRRLAKQMPRLNVEV 551 (585)
Q Consensus 535 ~~~~~~~~~~p~l~~~~ 551 (585)
.++..+...+|.+++..
T Consensus 286 ~~~~~l~~~l~~L~l~~ 302 (336)
T 2ast_B 286 GTLQLLKEALPHLQINC 302 (336)
T ss_dssp TCHHHHHHHSTTSEESC
T ss_pred HHHHHHHhhCcceEEec
Confidence 67777766677776543
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=1.1e-21 Score=210.31 Aligned_cols=395 Identities=16% Similarity=0.092 Sum_probs=229.4
Q ss_pred CCccEEEecCCCCcccCccCCCCCCCchHHHHHHHHhhCCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCH
Q 007916 80 PNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFST 159 (585)
Q Consensus 80 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~ 159 (585)
++++.|++.++. +... .......+++|++|+++++.++......+.. +++|++|++++|. ++
T Consensus 25 ~~l~~L~Ls~n~-l~~~--------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~-l~- 86 (680)
T 1ziw_A 25 TNITVLNLTHNQ-LRRL--------------PAANFTRYSQLTSLDVGFNTISKLEPELCQK-LPMLKVLNLQHNE-LS- 86 (680)
T ss_dssp TTCSEEECCSSC-CCCC--------------CGGGGGGGTTCSEEECCSSCCCCCCTTHHHH-CTTCCEEECCSSC-CC-
T ss_pred CCCcEEECCCCC-CCCc--------------CHHHHhCCCcCcEEECCCCccCccCHHHHhc-ccCcCEEECCCCc-cC-
Confidence 788999998764 2221 1112346789999999999776644444444 8999999999875 42
Q ss_pred HHHH-HHHHhCCCCCEEEcccCCCCccccccccccccCCCCcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcc
Q 007916 160 DGLA-AIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSIS 237 (585)
Q Consensus 160 ~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~ 237 (585)
.++ ..+..+++|++|++++|.++...... ...+++|++|+++++... ..... +..+++|++|++++|..
T Consensus 87 -~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 87 -QLSDKTFAFCTNLTELHLMSNSIQKIKNNP----FVKQKNLITLDLSHNGLSSTKLGT----QVQLENLQELLLSNNKI 157 (680)
T ss_dssp -CCCTTTTTTCTTCSEEECCSSCCCCCCSCT----TTTCTTCCEEECCSSCCSCCCCCS----SSCCTTCCEEECCSSCC
T ss_pred -ccChhhhccCCCCCEEECCCCccCccChhH----ccccCCCCEEECCCCcccccCchh----hcccccCCEEEccCCcc
Confidence 222 23457899999999999887644222 257889999999987532 11111 45789999999998864
Q ss_pred hhHHHHHHH--hCCccccccCcccccccCCCchhhHHHHhhcCCccccccccc-ccCcCCHHHH--hhcCCCCcEEEecc
Q 007916 238 LEQLQRLLV--RAPQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLW-EAVPLYLPAL--YNSCANLTFLNLSY 312 (585)
Q Consensus 238 ~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~l~~~~-~~~~~~l~~~--~~~~~~L~~L~l~~ 312 (585)
....+..+. .+++|++|++..+...... +..+..+++++.+.... .......... ....++|++|++++
T Consensus 158 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~ 231 (680)
T 1ziw_A 158 QALKSEELDIFANSSLKKLELSSNQIKEFS------PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231 (680)
T ss_dssp CCBCHHHHGGGTTCEESEEECTTCCCCCBC------TTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTT
T ss_pred cccCHHHhhccccccccEEECCCCcccccC------hhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccC
Confidence 333333333 5689999999876332111 11233445555554111 0110001111 11357899999999
Q ss_pred cccCChhHHHHHhcC--CCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHHHHHhcCccchh
Q 007916 313 TALQSGEFAKLVVHC--PRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHY 390 (585)
Q Consensus 313 ~~~~~~~l~~~~~~~--~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 390 (585)
+.+.... +..+..+ ++|+.|+++++.........+..+++|+.|+++++. ++......+ .++++|+.
T Consensus 232 n~l~~~~-~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~---------l~~~~~~~~-~~l~~L~~ 300 (680)
T 1ziw_A 232 SQLSTTS-NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN---------IQHLFSHSL-HGLFNVRY 300 (680)
T ss_dssp SCCCEEC-TTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC---------BSEECTTTT-TTCTTCCE
T ss_pred CcccccC-hhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc---------cCccChhhh-cCCCCccE
Confidence 8754432 1223334 459999998764333333345678999999999875 332211122 34788888
Q ss_pred hhccCCCCCHH----HHHH----HHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCC---
Q 007916 391 VLYFCRQMTNA----AVAT----IVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLT--- 458 (585)
Q Consensus 391 L~~~~~~l~~~----~l~~----l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~--- 458 (585)
|.+..+..... .+.. ....+++|++|+++++.. ++. ....+..+++|++|++++ .+.
T Consensus 301 L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l------~~~-----~~~~~~~l~~L~~L~Ls~n~~~~~~ 369 (680)
T 1ziw_A 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI------PGI-----KSNMFTGLINLKYLSLSNSFTSLRT 369 (680)
T ss_dssp EECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB------CCC-----CTTTTTTCTTCCEEECTTCBSCCCE
T ss_pred EeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc------CCC-----ChhHhccccCCcEEECCCCchhhhh
Confidence 87654432211 1110 123688999999987643 311 111245789999999976 211
Q ss_pred --hhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEcccccc
Q 007916 459 --DLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNV 532 (585)
Q Consensus 459 --~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i 532 (585)
+..+. ....++|+.|++++|+++.... ..+..+++|+.|++++|.++.......+..+++|++|++++|++
T Consensus 370 l~~~~f~--~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l 442 (680)
T 1ziw_A 370 LTNETFV--SLAHSPLHILNLTKNKISKIES-DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442 (680)
T ss_dssp ECTTTTG--GGTTSCCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSE
T ss_pred cchhhhc--ccccCcCceEECCCCCCCeECh-hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCc
Confidence 11111 0122467777777776543211 12345667777777776653211112334556666666666653
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=1.9e-21 Score=212.38 Aligned_cols=400 Identities=14% Similarity=0.067 Sum_probs=219.8
Q ss_pred hCCCccEEEecCCCCcccCccCCCCCCCchHHHHHHHHhhCCCCcEEEecccccChHH-HHHHHhhCCCccEEEecCCCC
Q 007916 78 RFPNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDES-LEFLASNFPNFKLLSLLSCDG 156 (585)
Q Consensus 78 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~-l~~i~~~~~~L~~L~l~~~~~ 156 (585)
..++++.|+++++. +.. ..+... ..+++|++|+++++...... ...+ ..+++|++|++++|.
T Consensus 22 lp~~l~~LdLs~N~-i~~--i~~~~~------------~~l~~L~~LdLs~n~~~~~i~~~~f-~~L~~L~~L~Ls~N~- 84 (844)
T 3j0a_A 22 VLNTTERLLLSFNY-IRT--VTASSF------------PFLEQLQLLELGSQYTPLTIDKEAF-RNLPNLRILDLGSSK- 84 (844)
T ss_dssp SCTTCCEEEEESCC-CCE--ECSSSC------------SSCCSCSEEEECTTCCCCEECTTTT-SSCTTCCEEECTTCC-
T ss_pred CCCCcCEEECCCCc-CCc--cChhHC------------cccccCeEEeCCCCCCccccCHHHh-cCCCCCCEEECCCCc-
Confidence 45788999998764 222 111222 36789999999988332211 1122 347889999999865
Q ss_pred CCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCCCcCEEEeccCCCCCChHHHHHHHhcCCCCcEEEecCCc
Q 007916 157 FSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSI 236 (585)
Q Consensus 157 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 236 (585)
++. ..+..+..+++|++|++++|.+++.... ......+++|++|+++++... .......+..+++|+.|++++|.
T Consensus 85 l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~~~L~~L~~L~Ls~N~l~--~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 85 IYF-LHPDAFQGLFHLFELRLYFCGLSDAVLK--DGYFRNLKALTRLDLSKNQIR--SLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CCE-ECTTSSCSCSSCCCEECTTCCCSSCCST--TCCCSSCSSCCEEEEESCCCC--CCCCCGGGGTCSSCCEEEEESSC
T ss_pred Ccc-cCHhHccCCcccCEeeCcCCCCCccccc--CccccccCCCCEEECCCCccc--ccccchhHhhCCCCCEEECCCCc
Confidence 422 2234456889999999999987763211 112357889999999987532 11111126788999999999876
Q ss_pred chhHHHHHHHhC--CccccccCccccccc-CCCchhhHHHHhhcCCcccccccccc-cCcC---CHHH------------
Q 007916 237 SLEQLQRLLVRA--PQLEELGTGSFLQDL-TARPYADLESAFNNCKNIHTLSGLWE-AVPL---YLPA------------ 297 (585)
Q Consensus 237 ~~~~~~~~~~~~--~~L~~L~l~~~~~~~-~~~~~~~l~~~~~~~~~L~~l~~~~~-~~~~---~l~~------------ 297 (585)
.....+..+..+ ++|+.|++..+.... .+.........+.. .+|+.|....+ .... .+..
T Consensus 160 i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l 238 (844)
T 3j0a_A 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN-MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238 (844)
T ss_dssp CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTT-CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred CCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcccc-CceeEEecCCCcCchhHHHHHHhhcCcccccceec
Confidence 432222222222 788888888754322 11111110000111 12555541111 0000 0000
Q ss_pred --------------------Hhhc--CCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCc
Q 007916 298 --------------------LYNS--CANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLE 355 (585)
Q Consensus 298 --------------------~~~~--~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~ 355 (585)
.+.. .++|+.|++++|.+... ....+..+++|+.|++.++.........+..+++|+
T Consensus 239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 317 (844)
T 3j0a_A 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL-NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317 (844)
T ss_dssp CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE-CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCC
T ss_pred ccccccccccccccCCCChhhhhccccCCccEEECCCCccccc-ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCC
Confidence 0011 25677777777664332 122345567777777766532222223345566777
Q ss_pred EEEecCCCCCchhhccccChhhHHHHHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcch
Q 007916 356 ELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMD 435 (585)
Q Consensus 356 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~ 435 (585)
.|++++|. ++...... ...+++|+.|+++.+.++......+ ..+++|+.|++++|. ++.
T Consensus 318 ~L~Ls~N~---------l~~~~~~~-~~~l~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~Ls~N~------l~~---- 376 (844)
T 3j0a_A 318 VLNLSYNL---------LGELYSSN-FYGLPKVAYIDLQKNHIAIIQDQTF-KFLEKLQTLDLRDNA------LTT---- 376 (844)
T ss_dssp EEEEESCC---------CSCCCSCS-CSSCTTCCEEECCSCCCCCCCSSCS-CSCCCCCEEEEETCC------SCC----
T ss_pred EEECCCCC---------CCccCHHH-hcCCCCCCEEECCCCCCCccChhhh-cCCCCCCEEECCCCC------CCc----
Confidence 77777754 21110001 1235667777666666543221111 256777777777553 221
Q ss_pred hhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHH
Q 007916 436 EAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLS 514 (585)
Q Consensus 436 ~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~ 514 (585)
...+++|+.|.+++ .++ .+.....+++.|++++|.+++.+....+..+++|+.|++++|.++......
T Consensus 377 ------i~~~~~L~~L~l~~N~l~-----~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 445 (844)
T 3j0a_A 377 ------IHFIPSIPDIFLSGNKLV-----TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445 (844)
T ss_dssp ------CSSCCSCSEEEEESCCCC-----CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS
T ss_pred ------ccCCCCcchhccCCCCcc-----cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc
Confidence 11256777777766 332 112235677888888887766444445567888888888888874321112
Q ss_pred HHhcCcCCcEEEccccccC
Q 007916 515 GLEKYESMRSLWMSACNVT 533 (585)
Q Consensus 515 ~~~~l~~L~~L~l~~~~it 533 (585)
....+++|+.|++++|.++
T Consensus 446 ~~~~~~~L~~L~Ls~N~l~ 464 (844)
T 3j0a_A 446 TPSENPSLEQLFLGENMLQ 464 (844)
T ss_dssp SSCSCTTCCBCEEESCCCS
T ss_pred ccccCCccccccCCCCccc
Confidence 2345688888888888865
No 35
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=8.3e-22 Score=211.48 Aligned_cols=348 Identities=11% Similarity=0.063 Sum_probs=186.2
Q ss_pred hhCCCCcEEEecccccChH-----------------HHHHHH-hhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEc
Q 007916 116 AKYPFLEELRLKRMAVSDE-----------------SLEFLA-SNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDI 177 (585)
Q Consensus 116 ~~~~~L~~L~l~~~~l~~~-----------------~l~~i~-~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L 177 (585)
..+++|+.|+|+++.++.+ ....+. ..+++|+.|++++|... ..++..+.++++|++|++
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~--~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM--TQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC--CSCCGGGGGCSSCCEEEC
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC--ccChHHHhCCCCCCEEEC
Confidence 3556677777777666552 122221 13566666666665421 122233446666666666
Q ss_pred ccCC-CCc-cccccccc---cccCCCCcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhCCcc
Q 007916 178 QENG-IED-SSGSWLSC---FPESFTSLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQL 251 (585)
Q Consensus 178 ~~~~-~~~-~~~~~l~~---~~~~~~~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 251 (585)
++|. +++ .....+.. ....+++|+.|+++++... ++.. ..+..+++|+.|++++|... .++ .+..+++|
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~---~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L 597 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS---ASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKL 597 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH---HHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh---hhhhcCCCCCEEECCCCCcc-cch-hhcCCCcc
Confidence 6665 554 21111111 1134556666666665422 2220 01555666666666665432 434 44555566
Q ss_pred ccccCcccccccCCCchhhHHHHhhcCCcccccccccccCcCCHHHHhhcCCC-CcEEEecccccCChhHHHHHhcC--C
Q 007916 252 EELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCAN-LTFLNLSYTALQSGEFAKLVVHC--P 328 (585)
Q Consensus 252 ~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~~~~~l~~~~~~~--~ 328 (585)
+.|++..+... .++..+..+++ |+.|++++|.+.. ++..+... +
T Consensus 598 ~~L~Ls~N~l~-------------------------------~lp~~l~~l~~~L~~L~Ls~N~L~~--lp~~~~~~~~~ 644 (876)
T 4ecn_A 598 TDLKLDYNQIE-------------------------------EIPEDFCAFTDQVEGLGFSHNKLKY--IPNIFNAKSVY 644 (876)
T ss_dssp SEEECCSSCCS-------------------------------CCCTTSCEECTTCCEEECCSSCCCS--CCSCCCTTCSS
T ss_pred eEEECcCCccc-------------------------------cchHHHhhccccCCEEECcCCCCCc--CchhhhccccC
Confidence 66665543211 23333455666 7777777776542 23322333 3
Q ss_pred CCcEEEecccCChhhHHHHH-----hcCCCCcEEEecCCCCCchhhccccChhhHHHHHhcCccchhhhccCCCCCHHHH
Q 007916 329 RLRRLWVLDTVEDKGLEAVG-----SNCPLLEELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAV 403 (585)
Q Consensus 329 ~L~~L~l~~~~~~~~l~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~l~~~~l 403 (585)
+|+.|+++++.....++.+. ..+++|+.|++++|. ++... ..+...+++|+.|+++.+.++. ..
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~---------L~~lp-~~~~~~l~~L~~L~Ls~N~L~~-ip 713 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE---------IQKFP-TELFATGSPISTIILSNNLMTS-IP 713 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC---------CCSCC-HHHHHTTCCCSEEECCSCCCSC-CC
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc---------CCccC-HHHHccCCCCCEEECCCCcCCc-cC
Confidence 47777777653222211111 123467777777764 33211 1223346777777777676651 11
Q ss_pred HHHHH-------hCCCCceEEeeccCCCCCCCCCCCcchhhHHHHH--hcCCCCcEEEccc-CCChhHHHHHhhcCcccc
Q 007916 404 ATIVQ-------NCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVV--KTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLE 473 (585)
Q Consensus 404 ~~l~~-------~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~ 473 (585)
..+.. .|++|+.|++++|.. +..+ . .+ ..+++|+.|++++ .++. ....+. .+++|+
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L------~~lp--~----~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~-~L~~L~ 779 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKL------TSLS--D----DFRATTLPYLSNMDVSYNCFSS-FPTQPL-NSSQLK 779 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCC------CCCC--G----GGSTTTCTTCCEEECCSSCCSS-CCCGGG-GCTTCC
T ss_pred hHHhccccccccccCCccEEECCCCCC------ccch--H----HhhhccCCCcCEEEeCCCCCCc-cchhhh-cCCCCC
Confidence 11111 223788888886643 3211 1 12 2678888888877 4443 222233 678888
Q ss_pred ceeccc------ccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccC
Q 007916 474 TLSVAF------AGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVT 533 (585)
Q Consensus 474 ~L~l~~------~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it 533 (585)
.|++++ |.+... +...+..+++|+.|++++|.++. ++.. -.++|+.|+|++|++.
T Consensus 780 ~L~Ls~N~~ls~N~l~~~-ip~~l~~L~~L~~L~Ls~N~L~~--Ip~~--l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 780 AFGIRHQRDAEGNRILRQ-WPTGITTCPSLIQLQIGSNDIRK--VDEK--LTPQLYILDIADNPNI 840 (876)
T ss_dssp EEECCCCBCTTCCBCCCC-CCTTGGGCSSCCEEECCSSCCCB--CCSC--CCSSSCEEECCSCTTC
T ss_pred EEECCCCCCccccccccc-ChHHHhcCCCCCEEECCCCCCCc--cCHh--hcCCCCEEECCCCCCC
Confidence 888876 444322 23345678999999999999832 2222 2378999999999854
No 36
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.79 E-value=5.7e-21 Score=194.48 Aligned_cols=356 Identities=10% Similarity=0.021 Sum_probs=227.4
Q ss_pred CCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCCCcCEEEeccCCCC-CChHHHHHHHh
Q 007916 144 PNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSE-VNTDALERLVS 222 (585)
Q Consensus 144 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~l~~ 222 (585)
++|++|+++++. ++.. .+..+..+++|++|++++|.+.... .......+++|++|+++++... +.... +.
T Consensus 30 ~~l~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~ 100 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAEL-NETSFSRLQDLQFLKVEQQTPGLVI---RNNTFRGLSSLIILKLDYNQFLQLETGA----FN 100 (455)
T ss_dssp TTCCEEECCSSC-CCEE-CTTTTSSCTTCCEEECCCCSTTCEE---CTTTTTTCTTCCEEECTTCTTCEECTTT----TT
T ss_pred CccCEEEecCCc-cCcC-ChhHhccCccccEEECcCCcccceE---CcccccccccCCEEeCCCCccCccChhh----cc
Confidence 679999999865 4322 2334568999999999999765321 1122357899999999987633 21211 67
Q ss_pred cCCCCcEEEecCCcchhHHHHH--HHhCCccccccCcccccccCCCchhhHHHHhhcCCcccccccccccCcCCHHHHhh
Q 007916 223 RCKSLKVLKVNKSISLEQLQRL--LVRAPQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYN 300 (585)
Q Consensus 223 ~~~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~l~~~~~~~~~~l~~~~~ 300 (585)
.+++|++|++++|......+.. +..+++|++|++.++.... ......+.
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------------------~~~~~~~~ 151 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK-----------------------------IQPASFFL 151 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS-----------------------------CCCCGGGG
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc-----------------------------cCcccccC
Confidence 7899999999998755444443 7788888888887642210 11112356
Q ss_pred cCCCCcEEEecccccCChhHHHHHhc--CCCCcEEEecccCChh------hH--HHHHhcCCCCcEEEecCCCCCchhhc
Q 007916 301 SCANLTFLNLSYTALQSGEFAKLVVH--CPRLRRLWVLDTVEDK------GL--EAVGSNCPLLEELRVFPADPFDEEII 370 (585)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~l~~~~~~--~~~L~~L~l~~~~~~~------~l--~~~~~~~~~L~~L~l~~~~~~~~~~~ 370 (585)
.+++|++|++++|.+....... +.. .++|+.|++.++.... +. ......+++|+.|+++++.
T Consensus 152 ~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~------- 223 (455)
T 3v47_A 152 NMRRFHVLDLTFNKVKSICEED-LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG------- 223 (455)
T ss_dssp GCTTCCEEECTTCCBSCCCTTT-SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC-------
T ss_pred CCCcccEEeCCCCcccccChhh-hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCc-------
Confidence 7899999999998865432211 122 2678888887652111 00 0112345679999998875
Q ss_pred cccChhhHHHHHhc--CccchhhhccCCCCCHHHH----------HHHH-HhCCCCceEEeeccCCCCCCCCCCCcchhh
Q 007916 371 HGVTEEGFVAVSFG--CRRLHYVLYFCRQMTNAAV----------ATIV-QNCPNFTHFRLCIMTPGLPDYLTNEPMDEA 437 (585)
Q Consensus 371 ~~~~~~~~~~~~~~--~~~L~~L~~~~~~l~~~~l----------~~l~-~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~ 437 (585)
++......+... .++|+.|.+..+......+ ..+. -.+++|+.|+++++.. + +.
T Consensus 224 --l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l------~-----~~ 290 (455)
T 3v47_A 224 --FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI------F-----AL 290 (455)
T ss_dssp --CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCC------C-----EE
T ss_pred --ccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccc------c-----cc
Confidence 555444444332 3677777655443221100 0000 1347899999987643 3 11
Q ss_pred HHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHH
Q 007916 438 FGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGL 516 (585)
Q Consensus 438 l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~ 516 (585)
....+..+++|+.|++++ .+++.....+. .+++|+.|++++|.++... ...+..+++|++|++++|.++.. .+..+
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~ 367 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFW-GLTHLLKLNLSQNFLGSID-SRMFENLDKLEVLDLSYNHIRAL-GDQSF 367 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCEEC-GGGGTTCTTCCEEECCSSCCCEE-CTTTT
T ss_pred chhhcccCCCCCEEECCCCcccccChhHhc-CcccCCEEECCCCccCCcC-hhHhcCcccCCEEECCCCccccc-Chhhc
Confidence 222356789999999988 66654444444 7899999999999986532 22357799999999999998543 23456
Q ss_pred hcCcCCcEEEccccccCHHHHHHHHhhCCCCcEEEeccCCCCCCcc
Q 007916 517 EKYESMRSLWMSACNVTMNACRRLAKQMPRLNVEVMKEDGSDDSQA 562 (585)
Q Consensus 517 ~~l~~L~~L~l~~~~it~~~~~~~~~~~p~l~~~~~~~~~~~~~~~ 562 (585)
..+++|++|+|++|+++..... ....++++..-.+.+.+...+.+
T Consensus 368 ~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 368 LGLPNLKELALDTNQLKSVPDG-IFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccccccEEECCCCccccCCHh-HhccCCcccEEEccCCCcccCCC
Confidence 7899999999999997652222 22467888777777666544443
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=5.3e-21 Score=199.74 Aligned_cols=157 Identities=12% Similarity=0.159 Sum_probs=96.9
Q ss_pred hcCCCCcEEEecCCCCCchhhccccChhhHHHHHhcCccchhhhccCCCCCHH-HHHHHHHhCCCCceEEeeccCCCCCC
Q 007916 349 SNCPLLEELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNA-AVATIVQNCPNFTHFRLCIMTPGLPD 427 (585)
Q Consensus 349 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~l~~~-~l~~l~~~~~~L~~L~l~~~~~~~~~ 427 (585)
..+++|+.|+++++. ++......+ ..+++|+.|+++.+.++.. ........+++|++|++++|....
T Consensus 350 ~~l~~L~~L~l~~n~---------l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~-- 417 (562)
T 3a79_B 350 PSPSSFTFLNFTQNV---------FTDSVFQGC-STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS-- 417 (562)
T ss_dssp SSCCCCCEEECCSSC---------CCTTTTTTC-CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS--
T ss_pred cCCCCceEEECCCCc---------cccchhhhh-cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC--
Confidence 345677777777654 332111111 2467777777777777642 122222367788888887664311
Q ss_pred CCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcC-ccccceecccccCChHHHHHHHhcCCCccEEEecCC
Q 007916 428 YLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYA-KNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDC 505 (585)
Q Consensus 428 ~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~-~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~ 505 (585)
.+. . ..+..+++|+.|++++ .+++..+. .. ++|+.|++++|+++. +...+..+++|++|++++|
T Consensus 418 ~~~-----~---~~~~~l~~L~~L~l~~n~l~~~~~~----~l~~~L~~L~L~~N~l~~--ip~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 418 HAY-----D---RTCAWAESILVLNLSSNMLTGSVFR----CLPPKVKVLDLHNNRIMS--IPKDVTHLQALQELNVASN 483 (562)
T ss_dssp CCS-----S---CCCCCCTTCCEEECCSSCCCGGGGS----SCCTTCSEEECCSSCCCC--CCTTTTSSCCCSEEECCSS
T ss_pred ccC-----h---hhhcCcccCCEEECCCCCCCcchhh----hhcCcCCEEECCCCcCcc--cChhhcCCCCCCEEECCCC
Confidence 011 0 0133567788888877 55543322 23 688999999888763 4333457889999999999
Q ss_pred CCChHHHHH-HHhcCcCCcEEEccccccC
Q 007916 506 PFGNEALLS-GLEKYESMRSLWMSACNVT 533 (585)
Q Consensus 506 ~~~~~~l~~-~~~~l~~L~~L~l~~~~it 533 (585)
.++. ++. .+..+++|+.|++++|+++
T Consensus 484 ~l~~--l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 484 QLKS--VPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CCCC--CCTTSTTTCTTCCCEECCSCCBC
T ss_pred CCCC--CCHHHHhcCCCCCEEEecCCCcC
Confidence 8853 223 2677889999999999864
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=9.8e-20 Score=191.15 Aligned_cols=323 Identities=15% Similarity=0.101 Sum_probs=200.8
Q ss_pred CCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCC
Q 007916 118 YPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESF 197 (585)
Q Consensus 118 ~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 197 (585)
.++++.++++++.++.... .+...+++|+.|++++|. ++.. .+..+..+++|++|+|++|.++..+... ...+
T Consensus 50 l~~l~~l~l~~~~l~~lp~-~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l 122 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPA-ALLDSFRQVELLNLNDLQ-IEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHV----FQNV 122 (597)
T ss_dssp GCCCSEEEESSCEESEECT-HHHHHCCCCSEEECTTSC-CCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTT----TTTC
T ss_pred CCCceEEEeeCCCCCCcCH-HHHccCCCCcEEECCCCC-CCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHH----HcCC
Confidence 5778888888875554222 223347888888888765 4321 1223457888888888888877654322 2467
Q ss_pred CCcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhCCccccccCcccccccCCCchhhHHHHhh
Q 007916 198 TSLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFN 276 (585)
Q Consensus 198 ~~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 276 (585)
++|++|+++++... ++.. ++..+++|+.|++++|......+..
T Consensus 123 ~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~-------------------------------- 166 (597)
T 3oja_B 123 PLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLERIEDDT-------------------------------- 166 (597)
T ss_dssp TTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCBCCTTT--------------------------------
T ss_pred CCCCEEEeeCCCCCCCCHH----HhccCCCCCEEEeeCCcCCCCChhh--------------------------------
Confidence 78888888777533 2222 1456777888888776522111112
Q ss_pred cCCcccccccccccCcCCHHHHhhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcE
Q 007916 277 NCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEE 356 (585)
Q Consensus 277 ~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~ 356 (585)
+..+++|++|++++|.+.... +..+++|+.|++.++.... +...++|+.
T Consensus 167 ----------------------~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~ 215 (597)
T 3oja_B 167 ----------------------FQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLST-----LAIPIAVEE 215 (597)
T ss_dssp ----------------------TTTCTTCCEEECTTSCCSBCC----GGGCTTCSEEECCSSCCSE-----EECCTTCSE
T ss_pred ----------------------hhcCCcCcEEECcCCCCCCcC----hhhhhhhhhhhcccCcccc-----ccCCchhhe
Confidence 334566666666666544322 2345666666666542211 123346777
Q ss_pred EEecCCCCCchhhccccChhhHHHHHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchh
Q 007916 357 LRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDE 436 (585)
Q Consensus 357 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~ 436 (585)
|+++++. ++.... ...++|+.|.++.+.+++. .. ...+++|+.|++++|.. ++
T Consensus 216 L~ls~n~---------l~~~~~----~~~~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~Ls~N~l------~~----- 268 (597)
T 3oja_B 216 LDASHNS---------INVVRG----PVNVELTILKLQHNNLTDT--AW-LLNYPGLVEVDLSYNEL------EK----- 268 (597)
T ss_dssp EECCSSC---------CCEEEC----SCCSCCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCC------CE-----
T ss_pred eeccCCc---------cccccc----ccCCCCCEEECCCCCCCCC--hh-hccCCCCCEEECCCCcc------CC-----
Confidence 7777654 211100 1135677777777777653 22 33788999999987643 31
Q ss_pred hHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHH
Q 007916 437 AFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSG 515 (585)
Q Consensus 437 ~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~ 515 (585)
.....+..+++|+.|++++ .++.-. .....+++|+.|+|++|.++. +...+..+++|+.|++++|.++...
T Consensus 269 ~~~~~~~~l~~L~~L~Ls~N~l~~l~--~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~l~~L~~L~L~~N~l~~~~---- 340 (597)
T 3oja_B 269 IMYHPFVKMQRLERLYISNNRLVALN--LYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTLK---- 340 (597)
T ss_dssp EESGGGTTCSSCCEEECTTSCCCEEE--CSSSCCTTCCEEECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCCCC----
T ss_pred CCHHHhcCccCCCEEECCCCCCCCCC--cccccCCCCcEEECCCCCCCc--cCcccccCCCCCEEECCCCCCCCcC----
Confidence 1122345788999999987 444311 111357899999999998864 3333467899999999999995432
Q ss_pred HhcCcCCcEEEccccccCHHHHHHHHhhCCCCcE
Q 007916 516 LEKYESMRSLWMSACNVTMNACRRLAKQMPRLNV 549 (585)
Q Consensus 516 ~~~l~~L~~L~l~~~~it~~~~~~~~~~~p~l~~ 549 (585)
+..+++|+.|+|++|+++......+...++...+
T Consensus 341 ~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~ 374 (597)
T 3oja_B 341 LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAV 374 (597)
T ss_dssp CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTB
T ss_pred hhhcCCCCEEEeeCCCCCChhHHHHHHHHhhhcc
Confidence 5678999999999999988877777666655433
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.76 E-value=4e-20 Score=189.28 Aligned_cols=178 Identities=15% Similarity=0.059 Sum_probs=111.3
Q ss_pred CCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCCCcCEEEeccCCCC-CChHHHHHHHh
Q 007916 144 PNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSE-VNTDALERLVS 222 (585)
Q Consensus 144 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~l~~ 222 (585)
++++.|+++++. ++... +..+..+++|++|+|++|.+++.... ....+++|++|+++++... ++... +.
T Consensus 32 ~~l~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~----~~ 101 (477)
T 2id5_A 32 TETRLLDLGKNR-IKTLN-QDEFASFPHLEELELNENIVSAVEPG----AFNNLFNLRTLGLRSNRLKLIPLGV----FT 101 (477)
T ss_dssp TTCSEEECCSSC-CCEEC-TTTTTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCSCCTTS----ST
T ss_pred CCCcEEECCCCc-cceEC-HhHccCCCCCCEEECCCCccCEeChh----hhhCCccCCEEECCCCcCCccCccc----cc
Confidence 469999999865 43221 23345899999999999988765322 2357889999999887533 33221 46
Q ss_pred cCCCCcEEEecCCcchhHHHHHHHhCCccccccCcccccccCCCchhhHHHHhhcCCcccccccccccCcCCHHHHhhcC
Q 007916 223 RCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSC 302 (585)
Q Consensus 223 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~l~~~~~~~~~~l~~~~~~~ 302 (585)
.+++|++|++++|......+..+..+++|++|++..+... . . .+..+..+
T Consensus 102 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~--------------------~------~----~~~~~~~l 151 (477)
T 2id5_A 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV--------------------Y------I----SHRAFSGL 151 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC--------------------E------E----CTTSSTTC
T ss_pred CCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc--------------------e------e----ChhhccCC
Confidence 7889999999987643333445566777777776653111 0 0 01123456
Q ss_pred CCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCC
Q 007916 303 ANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPA 362 (585)
Q Consensus 303 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~ 362 (585)
++|++|++++|.++.. ....+..+++|+.|++.++.........+..+++|+.|+++++
T Consensus 152 ~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 152 NSLEQLTLEKCNLTSI-PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp TTCCEEEEESCCCSSC-CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred CCCCEEECCCCcCccc-ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence 7788888888775543 2334566777888777765222222222345667777777764
No 40
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=9.2e-17 Score=159.33 Aligned_cols=248 Identities=15% Similarity=0.168 Sum_probs=184.2
Q ss_pred HHHHhhcCCCCcEEEecccccCChhHHHH---HhcCCCCcEEEecccCCh-------hhH---HHHHhcCCCCcEEEecC
Q 007916 295 LPALYNSCANLTFLNLSYTALQSGEFAKL---VVHCPRLRRLWVLDTVED-------KGL---EAVGSNCPLLEELRVFP 361 (585)
Q Consensus 295 l~~~~~~~~~L~~L~l~~~~~~~~~l~~~---~~~~~~L~~L~l~~~~~~-------~~l---~~~~~~~~~L~~L~l~~ 361 (585)
+...+..+++|++|++++|.++......+ +..+++|+.|+++++... .++ ...+..+++|+.|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 33456678999999999999877655443 557899999999875211 222 23346789999999999
Q ss_pred CCCCchhhccccChhhHH---HHHhcCccchhhhccCCCCCHHHHHHHHHhC------------CCCceEEeeccCCCCC
Q 007916 362 ADPFDEEIIHGVTEEGFV---AVSFGCRRLHYVLYFCRQMTNAAVATIVQNC------------PNFTHFRLCIMTPGLP 426 (585)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~------------~~L~~L~l~~~~~~~~ 426 (585)
|. ++..+.. .....+++|++|.++.+.+++.....++..+ ++|++|++++|.
T Consensus 104 n~---------l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~---- 170 (386)
T 2ca6_A 104 NA---------FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR---- 170 (386)
T ss_dssp CC---------CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC----
T ss_pred Cc---------CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC----
Confidence 76 6665443 2334589999999999999877666655433 999999999663
Q ss_pred CCCCCCcchhhHH---HHHhcCCCCcEEEccc-CCChhHHHHHhh----cCccccceecccccCChHHHHH---HHhcCC
Q 007916 427 DYLTNEPMDEAFG---AVVKTCSKLQRLSVSG-LLTDLTFEYIGK----YAKNLETLSVAFAGRSDRGMQC---VLEGCP 495 (585)
Q Consensus 427 ~~l~~~~~~~~l~---~~~~~~~~L~~L~l~~-~~~~~~~~~l~~----~~~~L~~L~l~~~~i~~~~l~~---l~~~~~ 495 (585)
++ +.++. ..+..+++|++|++++ .+++.+...+.. .+++|+.|++++|.+++.|... .+..++
T Consensus 171 --l~----~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~ 244 (386)
T 2ca6_A 171 --LE----NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244 (386)
T ss_dssp --CT----GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred --CC----cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence 55 45555 4456889999999998 888887666543 6899999999999998766544 457789
Q ss_pred CccEEEecCCCCChHHHH---HHHhc--CcCCcEEEccccccCHHHHHHHH----hhCCCCcEEEeccCCCCCCc
Q 007916 496 KLRKLEIRDCPFGNEALL---SGLEK--YESMRSLWMSACNVTMNACRRLA----KQMPRLNVEVMKEDGSDDSQ 561 (585)
Q Consensus 496 ~L~~L~l~~~~~~~~~l~---~~~~~--l~~L~~L~l~~~~it~~~~~~~~----~~~p~l~~~~~~~~~~~~~~ 561 (585)
+|++|++++|.+++.+.. ..+.. +++|++|+|++|.++..|+..+. ..+|++..-.+.........
T Consensus 245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 999999999999876544 34433 89999999999999997666555 44688877776666554333
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.74 E-value=6.4e-20 Score=187.75 Aligned_cols=299 Identities=16% Similarity=0.081 Sum_probs=181.4
Q ss_pred CCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCC
Q 007916 119 PFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFT 198 (585)
Q Consensus 119 ~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~ 198 (585)
++++.|+++++.++......+.. +++|++|+++++. ++.. .+..+..+++|++|+|++|.++..+... ...++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~-i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~ 104 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFAS-FPHLEELELNENI-VSAV-EPGAFNNLFNLRTLGLRSNRLKLIPLGV----FTGLS 104 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTT-CTTCCEEECTTSC-CCEE-CTTTTTTCTTCCEEECCSSCCCSCCTTS----STTCT
T ss_pred CCCcEEECCCCccceECHhHccC-CCCCCEEECCCCc-cCEe-ChhhhhCCccCCEEECCCCcCCccCccc----ccCCC
Confidence 68999999999777643333433 8899999999874 4322 1334468999999999999887654332 25789
Q ss_pred CcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhCCccccccCcccccccCCCchhhHHHHhhc
Q 007916 199 SLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFNN 277 (585)
Q Consensus 199 ~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~ 277 (585)
+|++|+++++... +.... +..+++|++|++++|......+..+..+++|++|++..+...
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--------------- 165 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYM----FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT--------------- 165 (477)
T ss_dssp TCCEEECTTSCCCEECTTT----TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS---------------
T ss_pred CCCEEECCCCccccCChhH----ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc---------------
Confidence 9999999987533 21111 678899999999988643333445677888888888764211
Q ss_pred CCcccccccccccCcCCHHHHhhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEE
Q 007916 278 CKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEEL 357 (585)
Q Consensus 278 ~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L 357 (585)
...+..+..+++|+.|+++++.+... ....+..+++|+.|++.++.....+........+|+.|
T Consensus 166 ---------------~~~~~~l~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 229 (477)
T 2id5_A 166 ---------------SIPTEALSHLHGLIVLRLRHLNINAI-RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL 229 (477)
T ss_dssp ---------------SCCHHHHTTCTTCCEEEEESCCCCEE-CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEE
T ss_pred ---------------ccChhHhcccCCCcEEeCCCCcCcEe-ChhhcccCcccceeeCCCCccccccCcccccCccccEE
Confidence 11233467789999999999885442 12235678999999998753222222222233478888
Q ss_pred EecCCCCCchhhccccChhhHHHHHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhh
Q 007916 358 RVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEA 437 (585)
Q Consensus 358 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~ 437 (585)
+++++. ++......+ ..+++|+.|+++++.. +..+
T Consensus 230 ~l~~n~---------l~~~~~~~~--------------------------~~l~~L~~L~Ls~n~l------~~~~---- 264 (477)
T 2id5_A 230 SITHCN---------LTAVPYLAV--------------------------RHLVYLRFLNLSYNPI------STIE---- 264 (477)
T ss_dssp EEESSC---------CCSCCHHHH--------------------------TTCTTCCEEECCSSCC------CEEC----
T ss_pred ECcCCc---------ccccCHHHh--------------------------cCccccCeeECCCCcC------CccC----
Confidence 888754 332211111 2455666666654432 2100
Q ss_pred HHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCC
Q 007916 438 FGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPF 507 (585)
Q Consensus 438 l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~ 507 (585)
...+..+++|+.|++++ .+++.....+. .+++|+.|++++|.++.... ..+..+++|+.|++++|++
T Consensus 265 -~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 265 -GSMLHELLRLQEIQLVGGQLAVVEPYAFR-GLNYLRVLNVSGNQLTTLEE-SVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp -TTSCTTCTTCCEEECCSSCCSEECTTTBT-TCTTCCEEECCSSCCSCCCG-GGBSCGGGCCEEECCSSCE
T ss_pred -hhhccccccCCEEECCCCccceECHHHhc-CcccCCEEECCCCcCceeCH-hHcCCCcccCEEEccCCCc
Confidence 01123455566666655 33332222222 45666666666666543211 1234566777777777765
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.74 E-value=4.9e-19 Score=176.07 Aligned_cols=323 Identities=14% Similarity=0.079 Sum_probs=191.3
Q ss_pred hCCCccEEEecCCCCcccCccCCCCCCCchHHHHHHHHhhCCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCC
Q 007916 78 RFPNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGF 157 (585)
Q Consensus 78 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~ 157 (585)
..++++.+++.++. +... ...+...+++|++|+++++.+++.....+. .+++|++|+++++. +
T Consensus 43 ~l~~l~~l~l~~~~-l~~l--------------~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~-l 105 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKL--------------PAALLDSFRQVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNA-I 105 (390)
T ss_dssp GGCCCSEEEEESCE-ESEE--------------CTHHHHHCCCCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSC-C
T ss_pred ccCCceEEEecCCc-hhhC--------------ChhHhcccccCcEEECCCCcccccChhhcc-CCCCcCEEECCCCC-C
Confidence 35788889888653 2211 123446789999999999977764333333 37899999999875 4
Q ss_pred CHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCCCcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCc
Q 007916 158 STDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSI 236 (585)
Q Consensus 158 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~ 236 (585)
+. ..+..+..+++|++|++++|.++..+.. +...+++|++|+++++... +.... +..+++|+.|++++|.
T Consensus 106 ~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 106 RY-LPPHVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLERIEDDT----FQATTSLQNLQLSSNR 176 (390)
T ss_dssp CC-CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCBCCTTT----TSSCTTCCEEECCSSC
T ss_pred Cc-CCHHHhcCCCCCCEEECCCCccCcCCHH----HhcCCCCCcEEECCCCccCccChhh----ccCCCCCCEEECCCCc
Confidence 22 2223346899999999999988764332 2357899999999987533 22221 5678999999999875
Q ss_pred chhHHHHHHHhCCccccccCcccccccCCCchhhHHHHhhcCCcccccccccccCcCCHHHHhhcCCCCcEEEecccccC
Q 007916 237 SLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQ 316 (585)
Q Consensus 237 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 316 (585)
.... .+..+++|+.|++..+... .+...++|++|+++++.+.
T Consensus 177 l~~~---~~~~l~~L~~L~l~~n~l~-----------------------------------~~~~~~~L~~L~l~~n~l~ 218 (390)
T 3o6n_A 177 LTHV---DLSLIPSLFHANVSYNLLS-----------------------------------TLAIPIAVEELDASHNSIN 218 (390)
T ss_dssp CSBC---CGGGCTTCSEEECCSSCCS-----------------------------------EEECCSSCSEEECCSSCCC
T ss_pred CCcc---ccccccccceeeccccccc-----------------------------------ccCCCCcceEEECCCCeee
Confidence 2211 1233444444444332100 0011235555555555432
Q ss_pred ChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHHHHHhcCccchhhhccCC
Q 007916 317 SGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCR 396 (585)
Q Consensus 317 ~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~ 396 (585)
.... ...++ |+.|++.++. +++. .....+++|+.|+++.+
T Consensus 219 ~~~~----~~~~~------------------------L~~L~l~~n~---------l~~~---~~l~~l~~L~~L~Ls~n 258 (390)
T 3o6n_A 219 VVRG----PVNVE------------------------LTILKLQHNN---------LTDT---AWLLNYPGLVEVDLSYN 258 (390)
T ss_dssp EEEC----CCCSS------------------------CCEEECCSSC---------CCCC---GGGGGCTTCSEEECCSS
T ss_pred eccc----ccccc------------------------ccEEECCCCC---------Cccc---HHHcCCCCccEEECCCC
Confidence 2100 11234 4555554432 2211 11123455555555445
Q ss_pred CCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccce
Q 007916 397 QMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETL 475 (585)
Q Consensus 397 ~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L 475 (585)
.+++.....+ ..+++|++|+++++. +++.+ .....+++|+.|++++ .++.- ...+. .+++|+.|
T Consensus 259 ~l~~~~~~~~-~~l~~L~~L~L~~n~------l~~~~------~~~~~l~~L~~L~L~~n~l~~~-~~~~~-~l~~L~~L 323 (390)
T 3o6n_A 259 ELEKIMYHPF-VKMQRLERLYISNNR------LVALN------LYGQPIPTLKVLDLSHNHLLHV-ERNQP-QFDRLENL 323 (390)
T ss_dssp CCCEEESGGG-TTCSSCCEEECCSSC------CCEEE------CSSSCCTTCCEEECCSSCCCCC-GGGHH-HHTTCSEE
T ss_pred cCCCcChhHc-cccccCCEEECCCCc------CcccC------cccCCCCCCCEEECCCCcceec-Ccccc-ccCcCCEE
Confidence 4443222222 257788888887654 33111 1124568888888877 44321 11222 57899999
Q ss_pred ecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCc
Q 007916 476 SVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMR 523 (585)
Q Consensus 476 ~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~ 523 (585)
++++|.+++.. +..+++|+.|++++|+++.......+..++...
T Consensus 324 ~L~~N~i~~~~----~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~ 367 (390)
T 3o6n_A 324 YLDHNSIVTLK----LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPA 367 (390)
T ss_dssp ECCSSCCCCCC----CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTT
T ss_pred ECCCCccceeC----chhhccCCEEEcCCCCccchhHHHHHHHHHhhc
Confidence 99999887643 467899999999999997766666666555443
No 43
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.73 E-value=7.4e-19 Score=183.50 Aligned_cols=391 Identities=12% Similarity=0.084 Sum_probs=219.4
Q ss_pred CCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCC
Q 007916 119 PFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFT 198 (585)
Q Consensus 119 ~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~ 198 (585)
+++++|+++++.++......+. .+++|++|++++|. ++. ..+..+..+++|++|++++|.++..+ .. .++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~-~l~~L~~L~Ls~N~-l~~-~~~~~~~~l~~L~~L~Ls~N~l~~lp-----~~--~l~ 121 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDIS-FLSELRVLRLSHNR-IRS-LDFHVFLFNQDLEYLDVSHNRLQNIS-----CC--PMA 121 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTT-TCTTCCEEECCSCC-CCE-ECTTTTTTCTTCCEEECTTSCCCEEC-----SC--CCT
T ss_pred CCcCEEECCCCCccccChhhhc-cCCCccEEECCCCC-CCc-CCHHHhCCCCCCCEEECCCCcCCccC-----cc--ccc
Confidence 7899999999977654333343 37899999999875 432 11333457899999999999887533 22 688
Q ss_pred CcCEEEeccCCCC-CC--hHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhCCcc--ccccCccccc--cc-CCCchhh
Q 007916 199 SLEVLNFANLTSE-VN--TDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQL--EELGTGSFLQ--DL-TARPYAD 270 (585)
Q Consensus 199 ~L~~L~l~~~~~~-~~--~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~-~~~~~~~ 270 (585)
+|++|+++++... ++ .. +..+++|++|++++|..... .+..+++| +.|++..+.. .. .+..+..
T Consensus 122 ~L~~L~Ls~N~l~~l~~p~~-----~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~ 193 (562)
T 3a79_B 122 SLRHLDLSFNDFDVLPVCKE-----FGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQI 193 (562)
T ss_dssp TCSEEECCSSCCSBCCCCGG-----GGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEE
T ss_pred cCCEEECCCCCccccCchHh-----hcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccc
Confidence 9999999988643 22 23 77889999999998764332 23344455 8888876533 10 0111000
Q ss_pred HHHHhh--------------------cCCccccccccccc----CcCCHHHHhhcCCCCcEEEecccccCChhHHHHHh-
Q 007916 271 LESAFN--------------------NCKNIHTLSGLWEA----VPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVV- 325 (585)
Q Consensus 271 l~~~~~--------------------~~~~L~~l~~~~~~----~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~- 325 (585)
+.. .. .+++|+.+....+. ........+...++|+.+++..+.+.+..+..+..
T Consensus 194 l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~ 272 (562)
T 3a79_B 194 PNT-TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272 (562)
T ss_dssp CCE-EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH
T ss_pred cCc-ceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh
Confidence 000 00 00000000000000 00001112233455555555555444433332211
Q ss_pred -cCCCCcEEEecccCCh--------------------------------hhHHHHHhcCCCCcEEEecCCCCCchhhccc
Q 007916 326 -HCPRLRRLWVLDTVED--------------------------------KGLEAVGSNCPLLEELRVFPADPFDEEIIHG 372 (585)
Q Consensus 326 -~~~~L~~L~l~~~~~~--------------------------------~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 372 (585)
..++|+.|++.++... ..+..+. ...+|+.|+++++.
T Consensus 273 ~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~-~~~~L~~L~l~~n~--------- 342 (562)
T 3a79_B 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF-AEMNIKMLSISDTP--------- 342 (562)
T ss_dssp HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHH-HTCCCSEEEEESSC---------
T ss_pred hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhh-ccCcceEEEccCCC---------
Confidence 2236666666543111 0111111 11234444444432
Q ss_pred cChhhHHHHHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEE
Q 007916 373 VTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLS 452 (585)
Q Consensus 373 ~~~~~~~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~ 452 (585)
+.... +...+++|++|+++.+.+++.....+ ..+++|++|+++++. +++ ...+...+..+++|+.|+
T Consensus 343 ~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~------l~~---~~~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 343 FIHMV---CPPSPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNG------LKN---FFKVALMTKNMSSLETLD 409 (562)
T ss_dssp CCCCC---CCSSCCCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSSC------CCB---TTHHHHTTTTCTTCCEEE
T ss_pred ccccc---CccCCCCceEEECCCCccccchhhhh-cccCCCCEEECCCCC------cCC---cccchhhhcCCCCCCEEE
Confidence 11100 00347788888888888876433333 367889999998654 331 123344456789999999
Q ss_pred ccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcC-CCccEEEecCCCCChHHHHHHHhcCcCCcEEEcccc
Q 007916 453 VSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGC-PKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSAC 530 (585)
Q Consensus 453 l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~-~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~ 530 (585)
+++ .++..........+++|+.|++++|.+++... ... ++|+.|++++|.++. ++..+..+++|++|++++|
T Consensus 410 l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~l~~~L~~L~L~~N~l~~--ip~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF----RCLPPKVKVLDLHNNRIMS--IPKDVTHLQALQELNVASN 483 (562)
T ss_dssp CTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG----SSCCTTCSEEECCSSCCCC--CCTTTTSSCCCSEEECCSS
T ss_pred CCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh----hhhcCcCCEEECCCCcCcc--cChhhcCCCCCCEEECCCC
Confidence 987 44432222122367899999999999875322 334 699999999999853 4444458899999999999
Q ss_pred ccCHHHHHHHHhhCCCCcEEEeccCCCC
Q 007916 531 NVTMNACRRLAKQMPRLNVEVMKEDGSD 558 (585)
Q Consensus 531 ~it~~~~~~~~~~~p~l~~~~~~~~~~~ 558 (585)
+++.-... ....++++..-.+.+++..
T Consensus 484 ~l~~l~~~-~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 484 QLKSVPDG-VFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CCCCCCTT-STTTCTTCCCEECCSCCBC
T ss_pred CCCCCCHH-HHhcCCCCCEEEecCCCcC
Confidence 97631111 1345677666555555443
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.72 E-value=8.4e-18 Score=169.64 Aligned_cols=206 Identities=17% Similarity=0.096 Sum_probs=126.5
Q ss_pred hhCCCccEEEecCCCCcccCccCCCCCCCchHHHHHHHHhhCCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCC
Q 007916 77 RRFPNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDG 156 (585)
Q Consensus 77 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~ 156 (585)
..+++++.|++.++. +.+. + . ...+++|++|+++++.++... + ..+++|++|++++|.
T Consensus 39 ~~l~~L~~L~Ls~n~-l~~~---~------------~-l~~l~~L~~L~Ls~n~l~~~~---~-~~l~~L~~L~Ls~N~- 96 (457)
T 3bz5_A 39 EQLATLTSLDCHNSS-ITDM---T------------G-IEKLTGLTKLICTSNNITTLD---L-SQNTNLTYLACDSNK- 96 (457)
T ss_dssp HHHTTCCEEECCSSC-CCCC---T------------T-GGGCTTCSEEECCSSCCSCCC---C-TTCTTCSEEECCSSC-
T ss_pred hHcCCCCEEEccCCC-cccC---h------------h-hcccCCCCEEEccCCcCCeEc---c-ccCCCCCEEECcCCC-
Confidence 456788888888653 2211 1 0 236788999999888776631 2 347888999988865
Q ss_pred CCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCCCcCEEEeccCCCCCChHHHHHHHhcCCCCcEEEecCCc
Q 007916 157 FSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSI 236 (585)
Q Consensus 157 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 236 (585)
++.. + +..+++|++|++++|.+++.+ ...+++|++|+++++... .- . +..+++|+.|++++|.
T Consensus 97 l~~~--~--~~~l~~L~~L~L~~N~l~~l~-------~~~l~~L~~L~l~~N~l~--~l--~--l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 97 LTNL--D--VTPLTKLTYLNCDTNKLTKLD-------VSQNPLLTYLNCARNTLT--EI--D--VSHNTQLTELDCHLNK 159 (457)
T ss_dssp CSCC--C--CTTCTTCCEEECCSSCCSCCC-------CTTCTTCCEEECTTSCCS--CC--C--CTTCTTCCEEECTTCS
T ss_pred Ccee--e--cCCCCcCCEEECCCCcCCeec-------CCCCCcCCEEECCCCccc--ee--c--cccCCcCCEEECCCCC
Confidence 4332 1 457888999999888876632 256788888888877532 11 1 5677888888888875
Q ss_pred chhHHHHHHHhCCccccccCcccccccCCCchhhHHHHhhcCCcccccccccccCcCCHHHHhhcCCCCcEEEecccccC
Q 007916 237 SLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQ 316 (585)
Q Consensus 237 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 316 (585)
.+..+ .+..+++|+.|++..+.... ++ +..+++|+.|++++|.++
T Consensus 160 ~~~~~--~~~~l~~L~~L~ls~n~l~~-------------------------------l~--l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 160 KITKL--DVTPQTQLTTLDCSFNKITE-------------------------------LD--VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp CCCCC--CCTTCTTCCEEECCSSCCCC-------------------------------CC--CTTCTTCCEEECCSSCCS
T ss_pred ccccc--ccccCCcCCEEECCCCccce-------------------------------ec--cccCCCCCEEECcCCcCC
Confidence 44443 24566777777776542210 11 234566666666666654
Q ss_pred ChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCC
Q 007916 317 SGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPAD 363 (585)
Q Consensus 317 ~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 363 (585)
... +..+++|+.|+++++.... ++ +..+++|+.|+++++.
T Consensus 205 ~~~----l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 205 KLD----LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp CCC----CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSC
T ss_pred eec----cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCc
Confidence 431 3455666666666542111 12 3455666666666653
No 45
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.70 E-value=1.8e-16 Score=155.59 Aligned_cols=220 Identities=10% Similarity=0.062 Sum_probs=123.3
Q ss_pred hcCC-CCcEEEecccccCChhH---HHHHhcC-CCCcEEEeccc-CCh---hhHHHHHhcC-CCCcEEEecCCCCCchhh
Q 007916 300 NSCA-NLTFLNLSYTALQSGEF---AKLVVHC-PRLRRLWVLDT-VED---KGLEAVGSNC-PLLEELRVFPADPFDEEI 369 (585)
Q Consensus 300 ~~~~-~L~~L~l~~~~~~~~~l---~~~~~~~-~~L~~L~l~~~-~~~---~~l~~~~~~~-~~L~~L~l~~~~~~~~~~ 369 (585)
..++ +|++|++++|.++.... ..++... ++|++|+++++ +.+ ..+...+..+ ++|+.|++++|.
T Consensus 47 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~------ 120 (362)
T 3goz_A 47 ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND------ 120 (362)
T ss_dssp HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC------
T ss_pred HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc------
Confidence 3344 56666666655443322 2222222 56666666654 221 2223333344 566677666654
Q ss_pred ccccChhhHHHHHh---c-CccchhhhccCCCCCHHHHHHHHH---hCC-CCceEEeeccCCCCCCCCCCCcchhhHHHH
Q 007916 370 IHGVTEEGFVAVSF---G-CRRLHYVLYFCRQMTNAAVATIVQ---NCP-NFTHFRLCIMTPGLPDYLTNEPMDEAFGAV 441 (585)
Q Consensus 370 ~~~~~~~~~~~~~~---~-~~~L~~L~~~~~~l~~~~l~~l~~---~~~-~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~ 441 (585)
+++.+...+.. . +.+|++|+++.+.+++.....+.. .++ +|++|++++|. +++.. ...+...
T Consensus 121 ---l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~------l~~~~-~~~l~~~ 190 (362)
T 3goz_A 121 ---FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN------LASKN-CAELAKF 190 (362)
T ss_dssp ---GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC------GGGSC-HHHHHHH
T ss_pred ---CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC------Cchhh-HHHHHHH
Confidence 44333333322 2 346666666666666433333322 344 78888887653 33111 2334444
Q ss_pred HhcC-CCCcEEEccc-CCChhHHHHHhh----cCccccceecccccCChHHH---HHHHhcCCCccEEEecCCC---CCh
Q 007916 442 VKTC-SKLQRLSVSG-LLTDLTFEYIGK----YAKNLETLSVAFAGRSDRGM---QCVLEGCPKLRKLEIRDCP---FGN 509 (585)
Q Consensus 442 ~~~~-~~L~~L~l~~-~~~~~~~~~l~~----~~~~L~~L~l~~~~i~~~~l---~~l~~~~~~L~~L~l~~~~---~~~ 509 (585)
+..+ ++|+.|++++ .+++.+...+.. .+++|+.|++++|.+++.+. ..++..+++|++|++++|. +++
T Consensus 191 l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~ 270 (362)
T 3goz_A 191 LASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSK 270 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCH
T ss_pred HHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCH
Confidence 4555 4788888877 666655554432 24588888888888777544 3344567888888888887 555
Q ss_pred HHHHHHHh---cCcCCcEEEccccccCHH
Q 007916 510 EALLSGLE---KYESMRSLWMSACNVTMN 535 (585)
Q Consensus 510 ~~l~~~~~---~l~~L~~L~l~~~~it~~ 535 (585)
..+..+.. .+++|++|++++|++.+.
T Consensus 271 ~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 271 EQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 55544443 446777888888886554
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=3e-18 Score=179.85 Aligned_cols=318 Identities=15% Similarity=0.085 Sum_probs=184.9
Q ss_pred CCCccEEEecCCCCcccCccCCCCCCCchHHHHHHHHhhCCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCC
Q 007916 79 FPNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFS 158 (585)
Q Consensus 79 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~ 158 (585)
.++++.+++.++. +... ...+...+++|+.|+++++.++......+. .+++|++|++++|. ++
T Consensus 50 l~~l~~l~l~~~~-l~~l--------------p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~-l~ 112 (597)
T 3oja_B 50 LNNQKIVTFKNST-MRKL--------------PAALLDSFRQVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNA-IR 112 (597)
T ss_dssp GCCCSEEEESSCE-ESEE--------------CTHHHHHCCCCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSC-CC
T ss_pred CCCceEEEeeCCC-CCCc--------------CHHHHccCCCCcEEECCCCCCCCCChHHhc-CCCCCCEEECCCCc-CC
Confidence 4567777777653 1111 123456789999999999987764333343 37899999999876 43
Q ss_pred HHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCCCcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcc
Q 007916 159 TDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSIS 237 (585)
Q Consensus 159 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~ 237 (585)
. ..+..+..+++|++|+|++|.++..+.. +...+++|++|+++++... +.... +..+++|+.|++++|..
T Consensus 113 ~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~l 183 (597)
T 3oja_B 113 Y-LPPHVFQNVPLLTVLVLERNDLSSLPRG----IFHNTPKLTTLSMSNNNLERIEDDT----FQATTSLQNLQLSSNRL 183 (597)
T ss_dssp C-CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCBCCTTT----TTTCTTCCEEECTTSCC
T ss_pred C-CCHHHHcCCCCCCEEEeeCCCCCCCCHH----HhccCCCCCEEEeeCCcCCCCChhh----hhcCCcCcEEECcCCCC
Confidence 2 2233446899999999999988764432 2357899999999988533 22221 66789999999998752
Q ss_pred hhHHHHHHHhCCccccccCcccccccCCCchhhHHHHhhcCCcccccccccccCcCCHHHHhhcCCCCcEEEecccccCC
Q 007916 238 LEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQS 317 (585)
Q Consensus 238 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~ 317 (585)
... .+..+++|+.|++..+... .+...++|+.|++++|.+..
T Consensus 184 ~~~---~~~~l~~L~~L~l~~n~l~-----------------------------------~l~~~~~L~~L~ls~n~l~~ 225 (597)
T 3oja_B 184 THV---DLSLIPSLFHANVSYNLLS-----------------------------------TLAIPIAVEELDASHNSINV 225 (597)
T ss_dssp SBC---CGGGCTTCSEEECCSSCCS-----------------------------------EEECCTTCSEEECCSSCCCE
T ss_pred CCc---ChhhhhhhhhhhcccCccc-----------------------------------cccCCchhheeeccCCcccc
Confidence 211 1233444444444332100 01122345555555554322
Q ss_pred hhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHHHHHhcCccchhhhccCCC
Q 007916 318 GEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQ 397 (585)
Q Consensus 318 ~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~ 397 (585)
... ...+ +|+.|++++|. +++. .....+++|+.|+++.+.
T Consensus 226 ~~~----~~~~------------------------~L~~L~L~~n~---------l~~~---~~l~~l~~L~~L~Ls~N~ 265 (597)
T 3oja_B 226 VRG----PVNV------------------------ELTILKLQHNN---------LTDT---AWLLNYPGLVEVDLSYNE 265 (597)
T ss_dssp EEC----SCCS------------------------CCCEEECCSSC---------CCCC---GGGGGCTTCSEEECCSSC
T ss_pred ccc----ccCC------------------------CCCEEECCCCC---------CCCC---hhhccCCCCCEEECCCCc
Confidence 100 1123 45555555433 2211 111224555555554455
Q ss_pred CCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCcccccee
Q 007916 398 MTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLS 476 (585)
Q Consensus 398 l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~ 476 (585)
+++.....+. .+++|+.|++++|. +++. ......+++|+.|++++ .++. ....+. .+++|+.|+
T Consensus 266 l~~~~~~~~~-~l~~L~~L~Ls~N~------l~~l------~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~-~l~~L~~L~ 330 (597)
T 3oja_B 266 LEKIMYHPFV-KMQRLERLYISNNR------LVAL------NLYGQPIPTLKVLDLSHNHLLH-VERNQP-QFDRLENLY 330 (597)
T ss_dssp CCEEESGGGT-TCSSCCEEECTTSC------CCEE------ECSSSCCTTCCEEECCSSCCCC-CGGGHH-HHTTCSEEE
T ss_pred cCCCCHHHhc-CccCCCEEECCCCC------CCCC------CcccccCCCCcEEECCCCCCCc-cCcccc-cCCCCCEEE
Confidence 4432222222 56778888877553 3311 11124567888888877 4432 112222 678899999
Q ss_pred cccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcC
Q 007916 477 VAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKY 519 (585)
Q Consensus 477 l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l 519 (585)
+++|.++... +..+++|+.|++++|+++...+...+..+
T Consensus 331 L~~N~l~~~~----~~~~~~L~~L~l~~N~~~~~~~~~~~~~~ 369 (597)
T 3oja_B 331 LDHNSIVTLK----LSTHHTLKNLTLSHNDWDCNSLRALFRNV 369 (597)
T ss_dssp CCSSCCCCCC----CCTTCCCSEEECCSSCEEHHHHHHHTTTC
T ss_pred CCCCCCCCcC----hhhcCCCCEEEeeCCCCCChhHHHHHHHH
Confidence 9988876532 46688999999999998666555555444
No 47
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.67 E-value=1e-15 Score=150.14 Aligned_cols=244 Identities=10% Similarity=0.078 Sum_probs=175.9
Q ss_pred CHHHHhhcCCCCcEEEecccccCChhH---HHHHhcCC-CCcEEEeccc-CChh---hHHHHHhcC-CCCcEEEecCCCC
Q 007916 294 YLPALYNSCANLTFLNLSYTALQSGEF---AKLVVHCP-RLRRLWVLDT-VEDK---GLEAVGSNC-PLLEELRVFPADP 364 (585)
Q Consensus 294 ~l~~~~~~~~~L~~L~l~~~~~~~~~l---~~~~~~~~-~L~~L~l~~~-~~~~---~l~~~~~~~-~~L~~L~l~~~~~ 364 (585)
.++.+....++|++|++++|.++.... ...+..++ +|++|+++++ +.+. .+...+... ++|++|++++|.
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~- 91 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF- 91 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-
T ss_pred HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-
Confidence 455566667779999999998665443 34566788 9999999987 3333 333334444 899999999986
Q ss_pred CchhhccccChhhHH---HHHhcC-ccchhhhccCCCCCHHHHHHHHHh----CCCCceEEeeccCCCCCCCCCCCcchh
Q 007916 365 FDEEIIHGVTEEGFV---AVSFGC-RRLHYVLYFCRQMTNAAVATIVQN----CPNFTHFRLCIMTPGLPDYLTNEPMDE 436 (585)
Q Consensus 365 ~~~~~~~~~~~~~~~---~~~~~~-~~L~~L~~~~~~l~~~~l~~l~~~----~~~L~~L~l~~~~~~~~~~l~~~~~~~ 436 (585)
+++.+.. .....+ ++|++|+++.+.+++.....++.. +++|++|++++|. +++.. ..
T Consensus 92 --------l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~------l~~~~-~~ 156 (362)
T 3goz_A 92 --------LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND------LGIKS-SD 156 (362)
T ss_dssp --------GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC------GGGSC-HH
T ss_pred --------CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc------CCHHH-HH
Confidence 5544443 333335 799999999999987776666543 4699999999764 44111 12
Q ss_pred hHHHHHhcCC-CCcEEEccc-CCChhHHHHHhh---cC-ccccceecccccCChHHHHHHH---hc-CCCccEEEecCCC
Q 007916 437 AFGAVVKTCS-KLQRLSVSG-LLTDLTFEYIGK---YA-KNLETLSVAFAGRSDRGMQCVL---EG-CPKLRKLEIRDCP 506 (585)
Q Consensus 437 ~l~~~~~~~~-~L~~L~l~~-~~~~~~~~~l~~---~~-~~L~~L~l~~~~i~~~~l~~l~---~~-~~~L~~L~l~~~~ 506 (585)
.+...+...+ +|++|++++ .+++.+...++. .+ ++|+.|++++|.+++.+...+. .. +++|++|++++|.
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 3344445555 999999998 777766655542 34 5999999999999886655443 33 5699999999999
Q ss_pred CChH---HHHHHHhcCcCCcEEEccccc---cCHHHHHHHHhhCCCCc-EEEec
Q 007916 507 FGNE---ALLSGLEKYESMRSLWMSACN---VTMNACRRLAKQMPRLN-VEVMK 553 (585)
Q Consensus 507 ~~~~---~l~~~~~~l~~L~~L~l~~~~---it~~~~~~~~~~~p~l~-~~~~~ 553 (585)
+++. .+...+..+++|++|++++|. ++..++..+...++.+. +..++
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~Ld 290 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVD 290 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEEC
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEe
Confidence 9663 445555788999999999998 89999999999888764 44444
No 48
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.66 E-value=5.9e-17 Score=163.41 Aligned_cols=220 Identities=15% Similarity=0.083 Sum_probs=147.4
Q ss_pred ccEEEeccccCCChhHHHhhCCCccEEEecCCCCcccCccCCCCCCCchHHHHHHHHhhCCCCcEEEecccccChHHHHH
Q 007916 59 RTQVFIGNCYSVSPEILTRRFPNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEF 138 (585)
Q Consensus 59 ~~~~~~~~~~~~~~~~l~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~l~~ 138 (585)
-+.+.+.+..-.... -+..+++|+.|++.++. +.... ...+++|++|+++++.++...
T Consensus 44 L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~-l~~~~-----------------~~~l~~L~~L~Ls~N~l~~~~--- 101 (457)
T 3bz5_A 44 LTSLDCHNSSITDMT-GIEKLTGLTKLICTSNN-ITTLD-----------------LSQNTNLTYLACDSNKLTNLD--- 101 (457)
T ss_dssp CCEEECCSSCCCCCT-TGGGCTTCSEEECCSSC-CSCCC-----------------CTTCTTCSEEECCSSCCSCCC---
T ss_pred CCEEEccCCCcccCh-hhcccCCCCEEEccCCc-CCeEc-----------------cccCCCCCEEECcCCCCceee---
Confidence 455555554322212 36778999999999764 32211 135789999999999877642
Q ss_pred HHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCCCcCEEEeccCCCCCChHHHH
Q 007916 139 LASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSEVNTDALE 218 (585)
Q Consensus 139 i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 218 (585)
+ ..+++|++|+++++. ++.. + +..+++|++|++++|.+++.+ ...+++|+.|+++++...-...
T Consensus 102 ~-~~l~~L~~L~L~~N~-l~~l--~--~~~l~~L~~L~l~~N~l~~l~-------l~~l~~L~~L~l~~n~~~~~~~--- 165 (457)
T 3bz5_A 102 V-TPLTKLTYLNCDTNK-LTKL--D--VSQNPLLTYLNCARNTLTEID-------VSHNTQLTELDCHLNKKITKLD--- 165 (457)
T ss_dssp C-TTCTTCCEEECCSSC-CSCC--C--CTTCTTCCEEECTTSCCSCCC-------CTTCTTCCEEECTTCSCCCCCC---
T ss_pred c-CCCCcCCEEECCCCc-CCee--c--CCCCCcCCEEECCCCccceec-------cccCCcCCEEECCCCCcccccc---
Confidence 3 348899999999975 4332 2 468999999999999987742 2578999999999873211111
Q ss_pred HHHhcCCCCcEEEecCCcchhHHHHHHHhCCccccccCcccccccCCCchhhHHHHhhcCCcccccccccccCcCCHHHH
Q 007916 219 RLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPAL 298 (585)
Q Consensus 219 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~l~~~~~~~~~~l~~~ 298 (585)
+..+++|+.|++++|.. ..++ +..+++|+.|++..+.... . .
T Consensus 166 --~~~l~~L~~L~ls~n~l-~~l~--l~~l~~L~~L~l~~N~l~~-----------------------------~----~ 207 (457)
T 3bz5_A 166 --VTPQTQLTTLDCSFNKI-TELD--VSQNKLLNRLNCDTNNITK-----------------------------L----D 207 (457)
T ss_dssp --CTTCTTCCEEECCSSCC-CCCC--CTTCTTCCEEECCSSCCSC-----------------------------C----C
T ss_pred --cccCCcCCEEECCCCcc-ceec--cccCCCCCEEECcCCcCCe-----------------------------e----c
Confidence 56789999999998853 3333 6778888988887652221 0 1
Q ss_pred hhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecC
Q 007916 299 YNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFP 361 (585)
Q Consensus 299 ~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~ 361 (585)
+..+++|++|++++|.++.. + +..+++|+.|+++++..... + ...+++|+.|++..
T Consensus 208 l~~l~~L~~L~Ls~N~l~~i--p--~~~l~~L~~L~l~~N~l~~~-~--~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSNKLTEI--D--VTPLTQLTYFDCSVNPLTEL-D--VSTLSKLTTLHCIQ 263 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECTT
T ss_pred cccCCCCCEEECcCCccccc--C--ccccCCCCEEEeeCCcCCCc-C--HHHCCCCCEEeccC
Confidence 34567888888888876652 2 56678888888876522111 1 34566777776654
No 49
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.62 E-value=4.1e-17 Score=164.43 Aligned_cols=303 Identities=16% Similarity=0.176 Sum_probs=139.4
Q ss_pred CCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCC
Q 007916 119 PFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFT 198 (585)
Q Consensus 119 ~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~ 198 (585)
++|++|+++++.++. +...+++|++|+++++. ++. ++ ...++|++|++++|.+++.+ . ...++
T Consensus 91 ~~L~~L~l~~n~l~~-----lp~~~~~L~~L~l~~n~-l~~--l~---~~~~~L~~L~L~~n~l~~lp-----~-~~~l~ 153 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-----LPELPQSLKSLLVDNNN-LKA--LS---DLPPLLEYLGVSNNQLEKLP-----E-LQNSS 153 (454)
T ss_dssp TTCSEEECCSSCCSS-----CCCCCTTCCEEECCSSC-CSC--CC---SCCTTCCEEECCSSCCSSCC-----C-CTTCT
T ss_pred CCCCEEEccCCcCCc-----cccccCCCcEEECCCCc-cCc--cc---CCCCCCCEEECcCCCCCCCc-----c-cCCCC
Confidence 577788887776554 11224667888877754 321 11 11257788888777766532 1 24677
Q ss_pred CcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhCCccccccCcccccccCCCchhhHHHHhhc
Q 007916 199 SLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFNN 277 (585)
Q Consensus 199 ~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~ 277 (585)
+|++|+++++... ++ ...++|++|++++|.. ..++ .+..+++|+.|++.++.....+
T Consensus 154 ~L~~L~l~~N~l~~lp--------~~~~~L~~L~L~~n~l-~~l~-~~~~l~~L~~L~l~~N~l~~l~------------ 211 (454)
T 1jl5_A 154 FLKIIDVDNNSLKKLP--------DLPPSLEFIAAGNNQL-EELP-ELQNLPFLTAIYADNNSLKKLP------------ 211 (454)
T ss_dssp TCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSSCCSSCC------------
T ss_pred CCCEEECCCCcCcccC--------CCcccccEEECcCCcC-CcCc-cccCCCCCCEEECCCCcCCcCC------------
Confidence 7788887776422 11 1234777777777642 2233 3566677777777654221100
Q ss_pred CCcccccccccccCcCCHHHHhhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEE
Q 007916 278 CKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEEL 357 (585)
Q Consensus 278 ~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L 357 (585)
...++|++|++++|.+.. ++. +..+++|+.|+++++.... ++ ...++|+.|
T Consensus 212 ----------------------~~~~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~~-l~---~~~~~L~~L 262 (454)
T 1jl5_A 212 ----------------------DLPLSLESIVAGNNILEE--LPE-LQNLPFLTTIYADNNLLKT-LP---DLPPSLEAL 262 (454)
T ss_dssp ----------------------CCCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSS-CC---SCCTTCCEE
T ss_pred ----------------------CCcCcccEEECcCCcCCc--ccc-cCCCCCCCEEECCCCcCCc-cc---ccccccCEE
Confidence 011355555555554331 111 3345555555555431110 10 122455566
Q ss_pred EecCCCCCchhhccccChhhHHHHHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhh
Q 007916 358 RVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEA 437 (585)
Q Consensus 358 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~ 437 (585)
++++|. ++. +....++|+.|+++.+.+++. ....++|+.|++++|. +++
T Consensus 263 ~l~~N~---------l~~-----l~~~~~~L~~L~ls~N~l~~l-----~~~~~~L~~L~l~~N~------l~~------ 311 (454)
T 1jl5_A 263 NVRDNY---------LTD-----LPELPQSLTFLDVSENIFSGL-----SELPPNLYYLNASSNE------IRS------ 311 (454)
T ss_dssp ECCSSC---------CSC-----CCCCCTTCCEEECCSSCCSEE-----SCCCTTCCEEECCSSC------CSE------
T ss_pred ECCCCc---------ccc-----cCcccCcCCEEECcCCccCcc-----cCcCCcCCEEECcCCc------CCc------
Confidence 555543 111 001134555555555554431 0122456666665443 221
Q ss_pred HHHHHhcC-CCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCCh-HHHHH
Q 007916 438 FGAVVKTC-SKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGN-EALLS 514 (585)
Q Consensus 438 l~~~~~~~-~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~-~~l~~ 514 (585)
+... ++|+.|++++ .++. +...+++|+.|++++|.++. +.. .+++|++|++++|+++. ..++.
T Consensus 312 ----i~~~~~~L~~L~Ls~N~l~~-----lp~~~~~L~~L~L~~N~l~~--lp~---~l~~L~~L~L~~N~l~~l~~ip~ 377 (454)
T 1jl5_A 312 ----LCDLPPSLEELNVSNNKLIE-----LPALPPRLERLIASFNHLAE--VPE---LPQNLKQLHVEYNPLREFPDIPE 377 (454)
T ss_dssp ----ECCCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSSCCCCCT
T ss_pred ----ccCCcCcCCEEECCCCcccc-----ccccCCcCCEEECCCCcccc--ccc---hhhhccEEECCCCCCCcCCCChH
Confidence 0112 3566666655 3322 11234566666666666542 221 35666666666666532 01122
Q ss_pred HHhcC-------------cCCcEEEccccccCH
Q 007916 515 GLEKY-------------ESMRSLWMSACNVTM 534 (585)
Q Consensus 515 ~~~~l-------------~~L~~L~l~~~~it~ 534 (585)
.+..+ ++|+.|++++|+++.
T Consensus 378 ~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 378 SVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp TCCEEECCC------------------------
T ss_pred HHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 22222 678888888888764
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.61 E-value=2.6e-17 Score=165.95 Aligned_cols=180 Identities=12% Similarity=0.045 Sum_probs=123.0
Q ss_pred hhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhH
Q 007916 299 YNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGF 378 (585)
Q Consensus 299 ~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 378 (585)
+..+++|++|++++|.+... + ...++|+.|++.++... .++. +..+++|+.|+++++. ++..
T Consensus 191 ~~~l~~L~~L~l~~N~l~~l--~---~~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~---------l~~l-- 252 (454)
T 1jl5_A 191 LQNLPFLTAIYADNNSLKKL--P---DLPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNL---------LKTL-- 252 (454)
T ss_dssp CTTCTTCCEEECCSSCCSSC--C---CCCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSC---------CSSC--
T ss_pred ccCCCCCCEEECCCCcCCcC--C---CCcCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCc---------CCcc--
Confidence 46688999999999886541 1 12368999999876322 3332 4678899999999864 3221
Q ss_pred HHHHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CC
Q 007916 379 VAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LL 457 (585)
Q Consensus 379 ~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~ 457 (585)
....++|+.|+++.+.++. +...+++|++|++++|. +++.+ .-.++|+.|++++ .+
T Consensus 253 ---~~~~~~L~~L~l~~N~l~~-----l~~~~~~L~~L~ls~N~------l~~l~---------~~~~~L~~L~l~~N~l 309 (454)
T 1jl5_A 253 ---PDLPPSLEALNVRDNYLTD-----LPELPQSLTFLDVSENI------FSGLS---------ELPPNLYYLNASSNEI 309 (454)
T ss_dssp ---CSCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSC------CSEES---------CCCTTCCEEECCSSCC
T ss_pred ---cccccccCEEECCCCcccc-----cCcccCcCCEEECcCCc------cCccc---------CcCCcCCEEECcCCcC
Confidence 1135788888887787764 22245789999998664 33110 1126799999987 44
Q ss_pred ChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccCH
Q 007916 458 TDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTM 534 (585)
Q Consensus 458 ~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it~ 534 (585)
+. +....++|+.|++++|+++. +. ..+++|+.|++++|.++. ++. .+++|++|++++|+++.
T Consensus 310 ~~-----i~~~~~~L~~L~Ls~N~l~~--lp---~~~~~L~~L~L~~N~l~~--lp~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 310 RS-----LCDLPPSLEELNVSNNKLIE--LP---ALPPRLERLIASFNHLAE--VPE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp SE-----ECCCCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSS
T ss_pred Cc-----ccCCcCcCCEEECCCCcccc--cc---ccCCcCCEEECCCCcccc--ccc---hhhhccEEECCCCCCCc
Confidence 43 22234689999999998864 22 336899999999999853 333 57899999999999765
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.60 E-value=2.6e-16 Score=152.45 Aligned_cols=289 Identities=11% Similarity=0.031 Sum_probs=150.8
Q ss_pred CccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCCCcCEEEeccCCCC-CChHHHHHHHhc
Q 007916 145 NFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSE-VNTDALERLVSR 223 (585)
Q Consensus 145 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~l~~~ 223 (585)
+++.++++++. ++ .++. .-.++|++|++++|.+++..... ...+++|++|+++++... +.... +..
T Consensus 32 ~l~~l~~~~~~-l~--~lp~--~~~~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~----~~~ 98 (330)
T 1xku_A 32 HLRVVQCSDLG-LE--KVPK--DLPPDTALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGA----FAP 98 (330)
T ss_dssp ETTEEECTTSC-CC--SCCC--SCCTTCCEEECCSSCCCCBCTTT----TTTCTTCCEEECCSSCCCCBCTTT----TTT
T ss_pred CCeEEEecCCC-cc--ccCc--cCCCCCeEEECCCCcCCEeChhh----hccCCCCCEEECCCCcCCeeCHHH----hcC
Confidence 47777776643 22 1111 12367888888888776643222 245677777777766422 21111 456
Q ss_pred CCCCcEEEecCCcchhHHHHHHHhCCccccccCcccccccCCCchhhHHHHhhcCCcccccccccccCcCCHHHHhhcCC
Q 007916 224 CKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCA 303 (585)
Q Consensus 224 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~l~~~~~~~~~~l~~~~~~~~ 303 (585)
+++|++|++++|.. ..++ . ...+
T Consensus 99 l~~L~~L~Ls~n~l-~~l~------------------------------------------------------~--~~~~ 121 (330)
T 1xku_A 99 LVKLERLYLSKNQL-KELP------------------------------------------------------E--KMPK 121 (330)
T ss_dssp CTTCCEEECCSSCC-SBCC------------------------------------------------------S--SCCT
T ss_pred CCCCCEEECCCCcC-CccC------------------------------------------------------h--hhcc
Confidence 67777777766541 1100 0 0125
Q ss_pred CCcEEEecccccCChhHHHHHhcCCCCcEEEecccCCh--hhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHHHH
Q 007916 304 NLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVED--KGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAV 381 (585)
Q Consensus 304 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 381 (585)
+|++|++++|.+... ....+..+++|+.|++.++... ......+..+++|+.|+++++. ++....
T Consensus 122 ~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~---------l~~l~~--- 188 (330)
T 1xku_A 122 TLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN---------ITTIPQ--- 188 (330)
T ss_dssp TCCEEECCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC---------CCSCCS---
T ss_pred cccEEECCCCccccc-CHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc---------cccCCc---
Confidence 677777777665443 2233456677777777654221 1222334566777777777654 221100
Q ss_pred HhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChh
Q 007916 382 SFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDL 460 (585)
Q Consensus 382 ~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~ 460 (585)
...++|++|+++.+.+++.....+ ..+++|++|+++++.. ++.+ ...+..+++|+.|++++ .++ .
T Consensus 189 -~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l------~~~~-----~~~~~~l~~L~~L~L~~N~l~-~ 254 (330)
T 1xku_A 189 -GLPPSLTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNSI------SAVD-----NGSLANTPHLRELHLNNNKLV-K 254 (330)
T ss_dssp -SCCTTCSEEECTTSCCCEECTGGG-TTCTTCCEEECCSSCC------CEEC-----TTTGGGSTTCCEEECCSSCCS-S
T ss_pred -cccccCCEEECCCCcCCccCHHHh-cCCCCCCEEECCCCcC------ceeC-----hhhccCCCCCCEEECCCCcCc-c
Confidence 012566666666666654322222 2567777777775532 2110 01234567777777766 333 1
Q ss_pred HHHHHhhcCccccceecccccCChHHHHHHH-----hcCCCccEEEecCCCCChHH-HHHHHhcCcCCcEEEccccc
Q 007916 461 TFEYIGKYAKNLETLSVAFAGRSDRGMQCVL-----EGCPKLRKLEIRDCPFGNEA-LLSGLEKYESMRSLWMSACN 531 (585)
Q Consensus 461 ~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~-----~~~~~L~~L~l~~~~~~~~~-l~~~~~~l~~L~~L~l~~~~ 531 (585)
....+. .+++|+.|++++|.++..+...+. ...+.|+.|++.+|++.... .+..+.++++|+.++|++|+
T Consensus 255 lp~~l~-~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 255 VPGGLA-DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCTTTT-TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CChhhc-cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 111122 567777788877776543222111 11367778888888773321 22345566778888887764
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.59 E-value=1.1e-15 Score=149.64 Aligned_cols=64 Identities=11% Similarity=0.207 Sum_probs=45.9
Q ss_pred cCccccceecccccCChHHHHH---HHhcCCCccEEEecCCCCChHHHHH-HHhcCcCCcEEEccccccC
Q 007916 468 YAKNLETLSVAFAGRSDRGMQC---VLEGCPKLRKLEIRDCPFGNEALLS-GLEKYESMRSLWMSACNVT 533 (585)
Q Consensus 468 ~~~~L~~L~l~~~~i~~~~l~~---l~~~~~~L~~L~l~~~~~~~~~l~~-~~~~l~~L~~L~l~~~~it 533 (585)
.+..++.++++.+.+++.++.. .+..+++|++|++++|.++. ++. ++..+++|++|++++|+++
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS--VPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc--cCHHHHhcCCCCCEEEeeCCCcc
Confidence 4456666677777666654443 45678999999999998853 222 2478899999999999864
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.58 E-value=2.7e-17 Score=174.97 Aligned_cols=108 Identities=16% Similarity=0.130 Sum_probs=70.6
Q ss_pred hCCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccC
Q 007916 117 KYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPES 196 (585)
Q Consensus 117 ~~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 196 (585)
.+++|++|+|++|.++.-....+ ..+++|++|++++|. ++. ..+..+.++++|++|++++|.++..+... ...
T Consensus 74 ~l~~L~~L~Ls~N~i~~i~~~~f-~~L~~L~~L~Ls~N~-l~~-l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~----~~~ 146 (635)
T 4g8a_A 74 SFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILTGNP-IQS-LALGAFSGLSSLQKLVAVETNLASLENFP----IGH 146 (635)
T ss_dssp TCTTCCEEECTTCCCCEECTTTT-TTCTTCCEEECTTCC-CCE-ECGGGGTTCTTCCEEECTTSCCCCSTTCC----CTT
T ss_pred CCCCCCEEECCCCcCCCcChhHh-cCCCCCCEEEccCCc-CCC-CCHHHhcCCCCCCEEECCCCcCCCCChhh----hhc
Confidence 57888888888886654222222 337788888888865 422 11233457888888888888776643222 256
Q ss_pred CCCcCEEEeccCCCC---CChHHHHHHHhcCCCCcEEEecCCc
Q 007916 197 FTSLEVLNFANLTSE---VNTDALERLVSRCKSLKVLKVNKSI 236 (585)
Q Consensus 197 ~~~L~~L~l~~~~~~---~~~~~l~~l~~~~~~L~~L~l~~~~ 236 (585)
+++|++|+++++... .+.. +..+++|++|++++|.
T Consensus 147 L~~L~~L~Ls~N~l~~~~~~~~-----~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 147 LKTLKELNVAHNLIQSFKLPEY-----FSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CTTCCEEECCSSCCCCCCCCGG-----GGGCTTCCEEECCSSC
T ss_pred CcccCeeccccCccccCCCchh-----hccchhhhhhcccCcc
Confidence 788888888877532 2222 5677888888888775
No 54
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.57 E-value=2.6e-16 Score=152.62 Aligned_cols=288 Identities=11% Similarity=0.043 Sum_probs=149.7
Q ss_pred CccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCCCcCEEEeccCCCC-CChHHHHHHHhc
Q 007916 145 NFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSE-VNTDALERLVSR 223 (585)
Q Consensus 145 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~l~~~ 223 (585)
+++.++++++. ++ .++.. -.++|++|++++|.++..... ....+++|++|+++++... +.... +..
T Consensus 34 ~l~~l~~~~~~-l~--~ip~~--~~~~l~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~----~~~ 100 (332)
T 2ft3_A 34 HLRVVQCSDLG-LK--AVPKE--ISPDTTLLDLQNNDISELRKD----DFKGLQHLYALVLVNNKISKIHEKA----FSP 100 (332)
T ss_dssp ETTEEECCSSC-CS--SCCSC--CCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECGGG----STT
T ss_pred cCCEEECCCCC-cc--ccCCC--CCCCCeEEECCCCcCCccCHh----HhhCCCCCcEEECCCCccCccCHhH----hhC
Confidence 47777777654 32 11111 136788888888776654321 1245677777777766422 11111 455
Q ss_pred CCCCcEEEecCCcchhHHHHHHHhCCccccccCcccccccCCCchhhHHHHhhcCCcccccccccccCcCCHHHHhhcCC
Q 007916 224 CKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCA 303 (585)
Q Consensus 224 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~l~~~~~~~~~~l~~~~~~~~ 303 (585)
+++|++|++++|... .++. ...+
T Consensus 101 l~~L~~L~L~~n~l~-~l~~--------------------------------------------------------~~~~ 123 (332)
T 2ft3_A 101 LRKLQKLYISKNHLV-EIPP--------------------------------------------------------NLPS 123 (332)
T ss_dssp CTTCCEEECCSSCCC-SCCS--------------------------------------------------------SCCT
T ss_pred cCCCCEEECCCCcCC-ccCc--------------------------------------------------------cccc
Confidence 677777777665411 1000 0014
Q ss_pred CCcEEEecccccCChhHHHHHhcCCCCcEEEecccCCh-h-hHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHHHH
Q 007916 304 NLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVED-K-GLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAV 381 (585)
Q Consensus 304 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 381 (585)
+|++|++++|.+... ....+..+++|+.|++.++... . .....+..+ +|+.|+++++. ++....
T Consensus 124 ~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~---------l~~l~~--- 189 (332)
T 2ft3_A 124 SLVELRIHDNRIRKV-PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK---------LTGIPK--- 189 (332)
T ss_dssp TCCEEECCSSCCCCC-CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB---------CSSCCS---
T ss_pred cCCEEECCCCccCcc-CHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC---------CCccCc---
Confidence 666666666654321 1122345666666666654221 1 111112222 66777776653 221100
Q ss_pred HhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChh
Q 007916 382 SFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDL 460 (585)
Q Consensus 382 ~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~ 460 (585)
...++|+.|+++.+.++......+. .+++|+.|+++++.. ++.+ . ..+..+++|+.|++++ .++ .
T Consensus 190 -~~~~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~L~~N~l------~~~~-~----~~~~~l~~L~~L~L~~N~l~-~ 255 (332)
T 2ft3_A 190 -DLPETLNELHLDHNKIQAIELEDLL-RYSKLYRLGLGHNQI------RMIE-N----GSLSFLPTLRELHLDNNKLS-R 255 (332)
T ss_dssp -SSCSSCSCCBCCSSCCCCCCTTSST-TCTTCSCCBCCSSCC------CCCC-T----TGGGGCTTCCEEECCSSCCC-B
T ss_pred -cccCCCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcC------CcCC-h----hHhhCCCCCCEEECCCCcCe-e
Confidence 0125677776666666543322222 567788888876543 2111 1 1234667788888876 443 1
Q ss_pred HHHHHhhcCccccceecccccCChHHHHHHHh-----cCCCccEEEecCCCCCh-HHHHHHHhcCcCCcEEEccccc
Q 007916 461 TFEYIGKYAKNLETLSVAFAGRSDRGMQCVLE-----GCPKLRKLEIRDCPFGN-EALLSGLEKYESMRSLWMSACN 531 (585)
Q Consensus 461 ~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~-----~~~~L~~L~l~~~~~~~-~~l~~~~~~l~~L~~L~l~~~~ 531 (585)
....+. .+++|+.|++++|.+++.+...+.. ..++|+.|++.+|++.. ...+..+..+++|+.+++++|+
T Consensus 256 lp~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 256 VPAGLP-DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCTTGG-GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cChhhh-cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 111222 6778888888888776543322211 14678888888888742 2223445677888888888774
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.54 E-value=1e-14 Score=151.50 Aligned_cols=85 Identities=20% Similarity=0.155 Sum_probs=56.6
Q ss_pred CCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCc
Q 007916 445 CSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMR 523 (585)
Q Consensus 445 ~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~ 523 (585)
+++|+.|++++ .++. +...+++|+.|++++|.++. +.. .+++|+.|++++|.++. ++..+.++++|+
T Consensus 220 ~~~L~~L~Ls~N~L~~-----lp~~l~~L~~L~Ls~N~L~~--lp~---~~~~L~~L~Ls~N~L~~--lp~~l~~l~~L~ 287 (622)
T 3g06_A 220 PSGLKELIVSGNRLTS-----LPVLPSELKELMVSGNRLTS--LPM---LPSGLLSLSVYRNQLTR--LPESLIHLSSET 287 (622)
T ss_dssp CTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCCS--CCGGGGGSCTTC
T ss_pred CCCCCEEEccCCccCc-----CCCCCCcCcEEECCCCCCCc--CCc---ccccCcEEeCCCCCCCc--CCHHHhhccccC
Confidence 35677777766 3332 11356778888888887753 222 56788888888888752 345567788888
Q ss_pred EEEccccccCHHHHHHHH
Q 007916 524 SLWMSACNVTMNACRRLA 541 (585)
Q Consensus 524 ~L~l~~~~it~~~~~~~~ 541 (585)
.|+|++|+++......+.
T Consensus 288 ~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 288 TVNLEGNPLSERTLQALR 305 (622)
T ss_dssp EEECCSCCCCHHHHHHHH
T ss_pred EEEecCCCCCCcCHHHHH
Confidence 888888887765555443
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.54 E-value=4.3e-16 Score=149.81 Aligned_cols=244 Identities=15% Similarity=0.072 Sum_probs=113.9
Q ss_pred HHHhcCCCCcEEEecCCcchhHHHHHHHhCCccccccCcccccccCCCchhhHHHHhhcCCcccccccccccCcCCHHHH
Q 007916 219 RLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPAL 298 (585)
Q Consensus 219 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~l~~~~~~~~~~l~~~ 298 (585)
.+...+++|++|++++|......+..+..+++|++|++..+.... ...
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-------------------------------~~~- 75 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-------------------------------TLD- 75 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-------------------------------EEE-
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-------------------------------chh-
Confidence 344455566666666654332234455556666666655431110 000
Q ss_pred hhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhH
Q 007916 299 YNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGF 378 (585)
Q Consensus 299 ~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 378 (585)
+..+++|++|++++|.++.. ...++|+.|++.++...... ...+++|+.|+++++. ++....
T Consensus 76 ~~~l~~L~~L~Ls~n~l~~l------~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~l~~N~---------l~~~~~ 137 (317)
T 3o53_A 76 LESLSTLRTLDLNNNYVQEL------LVGPSIETLHAANNNISRVS---CSRGQGKKNIYLANNK---------ITMLRD 137 (317)
T ss_dssp ETTCTTCCEEECCSSEEEEE------EECTTCCEEECCSSCCSEEE---ECCCSSCEEEECCSSC---------CCSGGG
T ss_pred hhhcCCCCEEECcCCccccc------cCCCCcCEEECCCCccCCcC---ccccCCCCEEECCCCC---------CCCccc
Confidence 34567777777777765432 13467777777654211100 1234667777777654 222111
Q ss_pred HHHHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CC
Q 007916 379 VAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LL 457 (585)
Q Consensus 379 ~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~ 457 (585)
..+ ..+++|++|+++.+.+++.....+...+++|++|++++|. +++.+ . ...+++|+.|++++ .+
T Consensus 138 ~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~------l~~~~--~-----~~~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 138 LDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF------IYDVK--G-----QVVFAKLKTLDLSSNKL 203 (317)
T ss_dssp BCT-GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC------CCEEE--C-----CCCCTTCCEEECCSSCC
T ss_pred hhh-hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc------Ccccc--c-----ccccccCCEEECCCCcC
Confidence 111 1245555555555555543333333345566666665443 22100 0 01245555555554 33
Q ss_pred ChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEcccc
Q 007916 458 TDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSAC 530 (585)
Q Consensus 458 ~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~ 530 (585)
+.-... +. .+++|+.|++++|.++. +...+..+++|+.|++++|+++...++..+..+++|+.|++.+|
T Consensus 204 ~~l~~~-~~-~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 204 AFMGPE-FQ-SAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CEECGG-GG-GGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Ccchhh-hc-ccCcccEEECcCCcccc--hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 221111 11 44555555555555442 22223444555555555555543334444555555555554433
No 57
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.53 E-value=1.3e-15 Score=147.56 Aligned_cols=64 Identities=5% Similarity=-0.040 Sum_probs=35.1
Q ss_pred hcCCCCcEEEccc-CCChhHHHHHh-----hcCccccceecccccCChHHHH-HHHhcCCCccEEEecCCC
Q 007916 443 KTCSKLQRLSVSG-LLTDLTFEYIG-----KYAKNLETLSVAFAGRSDRGMQ-CVLEGCPKLRKLEIRDCP 506 (585)
Q Consensus 443 ~~~~~L~~L~l~~-~~~~~~~~~l~-----~~~~~L~~L~l~~~~i~~~~l~-~l~~~~~~L~~L~l~~~~ 506 (585)
..+++|++|++++ .++......++ ...+.|+.|++++|.+....+. ..+..+++|+.+++++|+
T Consensus 260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 4556677777765 33332222221 1246788888888876543222 234567889999998874
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.51 E-value=7.2e-17 Score=154.84 Aligned_cols=208 Identities=16% Similarity=0.097 Sum_probs=121.8
Q ss_pred cCCCCcEEEecccccCChhHHHH-HhcCCCCcEEEecccCChhhHHHHHhc-----CCCCcEEEecCCCCCchhhccccC
Q 007916 301 SCANLTFLNLSYTALQSGEFAKL-VVHCPRLRRLWVLDTVEDKGLEAVGSN-----CPLLEELRVFPADPFDEEIIHGVT 374 (585)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~l~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~ 374 (585)
.+++|++|++++|.+.......+ ...+++|+.|+++++..... +..+.. +++|++|+++++. ++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~---------l~ 162 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAH---------SL 162 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCS---------CC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCC---------Cc
Confidence 35666666666666543211111 24566666666665422111 111112 2677777777754 22
Q ss_pred hhhHHHHHhcCccchhhhccCCCCCHHH--HHHH-HHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEE
Q 007916 375 EEGFVAVSFGCRRLHYVLYFCRQMTNAA--VATI-VQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRL 451 (585)
Q Consensus 375 ~~~~~~~~~~~~~L~~L~~~~~~l~~~~--l~~l-~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L 451 (585)
......+ ..+++|++|+++.+.+.... ...+ ...+++|++|++++|. ++. +......+...+++|+.|
T Consensus 163 ~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~------l~~--~~~~~~~~~~~l~~L~~L 233 (312)
T 1wwl_A 163 NFSCEQV-RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG------MET--PSGVCSALAAARVQLQGL 233 (312)
T ss_dssp CCCTTTC-CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC------CCC--HHHHHHHHHHTTCCCSEE
T ss_pred cchHHHh-ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc------Ccc--hHHHHHHHHhcCCCCCEE
Confidence 2111111 13677777777777765431 2222 1467888888888654 331 112233455677888888
Q ss_pred Eccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEcccc
Q 007916 452 SVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSAC 530 (585)
Q Consensus 452 ~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~ 530 (585)
++++ .+++.........+++|+.|++++|.++. +...+ .++|++|++++|++++. +. +..+++|++|++++|
T Consensus 234 ~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~--~~~L~~L~Ls~N~l~~~--p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ--VPKGL--PAKLSVLDLSYNRLDRN--PS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp ECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS--CCSSC--CSEEEEEECCSSCCCSC--CC-TTTSCEEEEEECTTC
T ss_pred ECCCCcCCcccchhhhhhcCCCCEEECCCCccCh--hhhhc--cCCceEEECCCCCCCCC--hh-HhhCCCCCEEeccCC
Confidence 8877 45443211111246889999999998763 32222 27999999999998554 23 678899999999999
Q ss_pred ccCH
Q 007916 531 NVTM 534 (585)
Q Consensus 531 ~it~ 534 (585)
++++
T Consensus 307 ~l~~ 310 (312)
T 1wwl_A 307 PFLD 310 (312)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 9865
No 59
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.51 E-value=2.2e-17 Score=158.28 Aligned_cols=84 Identities=13% Similarity=0.053 Sum_probs=44.3
Q ss_pred hcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcC
Q 007916 443 KTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYES 521 (585)
Q Consensus 443 ~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~ 521 (585)
..+++|+.|++++ .++..... + ..+++|+.|++++|.+++. +...+..+++|+.|++++|++++. ++.. ..+++
T Consensus 218 ~~l~~L~~L~L~~N~l~~~~~~-~-~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~-ip~~-~~l~~ 292 (313)
T 1ogq_A 218 GSDKNTQKIHLAKNSLAFDLGK-V-GLSKNLNGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFNNLCGE-IPQG-GNLQR 292 (313)
T ss_dssp CTTSCCSEEECCSSEECCBGGG-C-CCCTTCCEEECCSSCCEEC-CCGGGGGCTTCCEEECCSSEEEEE-CCCS-TTGGG
T ss_pred hcCCCCCEEECCCCceeeecCc-c-cccCCCCEEECcCCcccCc-CChHHhcCcCCCEEECcCCccccc-CCCC-ccccc
Confidence 3456666666655 22211111 1 2456666666666665422 222345566777777777766322 2222 45666
Q ss_pred CcEEEccccc
Q 007916 522 MRSLWMSACN 531 (585)
Q Consensus 522 L~~L~l~~~~ 531 (585)
|+.+++++|+
T Consensus 293 L~~l~l~~N~ 302 (313)
T 1ogq_A 293 FDVSAYANNK 302 (313)
T ss_dssp SCGGGTCSSS
T ss_pred cChHHhcCCC
Confidence 6666676665
No 60
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.50 E-value=9.8e-17 Score=170.67 Aligned_cols=422 Identities=14% Similarity=0.072 Sum_probs=213.3
Q ss_pred HHHhhCCCccEEEecCCCCcccCccCCCCCCCchHHHHHHHHhhCCCCcEEEecccccChHHHHHHHhhCCCccEEEecC
Q 007916 74 ILTRRFPNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLS 153 (585)
Q Consensus 74 ~l~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~ 153 (585)
..+..+++|+.|+++++. +.. ++. .....+++|++|+|+++.++.-....+ ..+++|++|++++
T Consensus 70 ~~f~~l~~L~~L~Ls~N~-i~~---i~~-----------~~f~~L~~L~~L~Ls~N~l~~l~~~~f-~~L~~L~~L~Ls~ 133 (635)
T 4g8a_A 70 YSFFSFPELQVLDLSRCE-IQT---IED-----------GAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLVAVE 133 (635)
T ss_dssp TTTTTCTTCCEEECTTCC-CCE---ECT-----------TTTTTCTTCCEEECTTCCCCEECGGGG-TTCTTCCEEECTT
T ss_pred HHHhCCCCCCEEECCCCc-CCC---cCh-----------hHhcCCCCCCEEEccCCcCCCCCHHHh-cCCCCCCEEECCC
Confidence 456788999999999773 211 111 112357899999999997765322223 3488999999998
Q ss_pred CCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCCCcCEEEeccCCCC-CChHHHHHHHhcCC-------
Q 007916 154 CDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSE-VNTDALERLVSRCK------- 225 (585)
Q Consensus 154 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~l~~~~~------- 225 (585)
|. ++.. .+..+..+++|++|++++|.++... +......+++|++|+++++... +....+..+.....
T Consensus 134 N~-l~~l-~~~~~~~L~~L~~L~Ls~N~l~~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 134 TN-LASL-ENFPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp SC-CCCS-TTCCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred Cc-CCCC-ChhhhhcCcccCeeccccCccccCC---CchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 75 3211 1122468899999999999876543 2233457899999999987533 33444443221111
Q ss_pred ----------------CCcEEEecCCcchhH-HHHHHHhCCccccccCccccccc-------CCCchhhH----------
Q 007916 226 ----------------SLKVLKVNKSISLEQ-LQRLLVRAPQLEELGTGSFLQDL-------TARPYADL---------- 271 (585)
Q Consensus 226 ----------------~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~~~l---------- 271 (585)
.+..+.+.++..... ....+..+..++...+....... ........
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence 123444444432222 34556666666544332110000 00000000
Q ss_pred ----------HHHhhcCCcccccccccccCcCCHHHHhhcCCCCcEEEecccccCCh---hHH---------------HH
Q 007916 272 ----------ESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSG---EFA---------------KL 323 (585)
Q Consensus 272 ----------~~~~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~---~l~---------------~~ 323 (585)
........++..+..... ...... .+.....++.|++.++.+... .+. ..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 366 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSV-TIERVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS 366 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESC-EEEECG-GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCC
T ss_pred hhhcccccchhhhhhhhccccccccccc-cccccc-ccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcc
Confidence 000111111111110000 000000 112233444554444431110 000 00
Q ss_pred HhcCCCCcEEEecccCCh--hhHHHHHhcCCCCcEEEecCCCCCchh-----h----------ccccChhhHHHHHhcCc
Q 007916 324 VVHCPRLRRLWVLDTVED--KGLEAVGSNCPLLEELRVFPADPFDEE-----I----------IHGVTEEGFVAVSFGCR 386 (585)
Q Consensus 324 ~~~~~~L~~L~l~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~-----~----------~~~~~~~~~~~~~~~~~ 386 (585)
...+++|+.|.+..+... .........+.+|+.+++..+...... . .. ............++
T Consensus 367 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~-~~~~~~~~~~~~l~ 445 (635)
T 4g8a_A 367 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLR 445 (635)
T ss_dssp CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSE-EESTTSSCTTTTCT
T ss_pred cccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcc-cccccccccccccc
Confidence 113456666666543111 111112233445555555543200000 0 00 00000001112345
Q ss_pred cchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHH
Q 007916 387 RLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYI 465 (585)
Q Consensus 387 ~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l 465 (585)
+++.+++..+.+..... .....+++|+.|+++++.. .. ......+..+++|+.|++++ .++......+
T Consensus 446 ~l~~l~ls~n~l~~~~~-~~~~~~~~L~~L~Ls~N~~-----~~-----~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f 514 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSF-----QE-----NFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 514 (635)
T ss_dssp TCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEE-----GG-----GEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ccccccccccccccccc-cccccchhhhhhhhhhccc-----cc-----ccCchhhhhccccCEEECCCCccCCcChHHH
Confidence 55566555555542211 1223567888888876532 11 11112345678999999987 5554433333
Q ss_pred hhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcC-cCCcEEEccccccC
Q 007916 466 GKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKY-ESMRSLWMSACNVT 533 (585)
Q Consensus 466 ~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l-~~L~~L~l~~~~it 533 (585)
. .+++|+.|+|++|+++.... ..+..+++|+.|++++|+++.. .+..+..+ ++|+.|+|++|+++
T Consensus 515 ~-~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 515 N-SLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIMTS-KKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp T-TCTTCCEEECTTSCCCBCCC-GGGTTCTTCCEEECTTSCCCBC-CSSCTTCCCTTCCEEECTTCCBC
T ss_pred c-CCCCCCEEECCCCcCCCCCh-hHHhCCCCCCEEECCCCcCCCC-CHHHHHhhhCcCCEEEeeCCCCc
Confidence 3 78899999999998754221 1246789999999999998443 12344556 68999999998853
No 61
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.50 E-value=2.4e-13 Score=132.69 Aligned_cols=146 Identities=18% Similarity=0.165 Sum_probs=68.4
Q ss_pred cchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHH----hcCCCCcEEEccc-CCChhH
Q 007916 387 RLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVV----KTCSKLQRLSVSG-LLTDLT 461 (585)
Q Consensus 387 ~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~----~~~~~L~~L~l~~-~~~~~~ 461 (585)
+|+.|+++.+.+++..+..++..+++|++|++++| .++ +.+...+. ..++.|++|++++ .+++.+
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n------~l~----~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~ 171 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN------SLG----PEACKDLRDLLLHDQCQITTLRLSNNPLTAAG 171 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS------CCC----HHHHHHHHHHHHSTTCCCCEEECCSSCCHHHH
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC------CCC----HHHHHHHHHHHHhcCCccceeeCCCCCCChHH
Confidence 44444444444444444444444444555555433 233 22222221 1234455555554 444444
Q ss_pred HHHHh---hcCccccceecccccCChHHHHHHH---hcCCCccEEEecCCCCChHHHHHH---HhcCcCCcEEEcccccc
Q 007916 462 FEYIG---KYAKNLETLSVAFAGRSDRGMQCVL---EGCPKLRKLEIRDCPFGNEALLSG---LEKYESMRSLWMSACNV 532 (585)
Q Consensus 462 ~~~l~---~~~~~L~~L~l~~~~i~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~l~~~---~~~l~~L~~L~l~~~~i 532 (585)
...++ ..+++|++|+|++|.+++.|+..+. ..+++|++|++++|.+++.+...+ +..+++|++|+|++|+|
T Consensus 172 ~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 172 VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 44443 1345555555555555555443332 334555555555555554433222 23445555555555555
Q ss_pred CHHHHHHHHh
Q 007916 533 TMNACRRLAK 542 (585)
Q Consensus 533 t~~~~~~~~~ 542 (585)
++.|+..+..
T Consensus 252 ~~~g~~~L~~ 261 (372)
T 3un9_A 252 SSEGRQVLRD 261 (372)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 5555555544
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.49 E-value=1.4e-15 Score=146.21 Aligned_cols=253 Identities=14% Similarity=0.084 Sum_probs=172.9
Q ss_pred CcEEEecCCcchhHHHHHHHhCCccccccCcccccccCCCchhhHHHHhhcCCcccccccccccCcCCHHHHhhcCCCCc
Q 007916 227 LKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLT 306 (585)
Q Consensus 227 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~ 306 (585)
++..+++.+............+++|++|++.++... ...+..+..+++|+
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~------------------------------~~~~~~~~~l~~L~ 61 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS------------------------------QISAADLAPFTKLE 61 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC------------------------------CCCHHHHTTCTTCC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccC------------------------------cCCHHHhhCCCcCC
Confidence 444444444332334455566778888888764221 12234567789999
Q ss_pred EEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHHHHHhcCc
Q 007916 307 FLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAVSFGCR 386 (585)
Q Consensus 307 ~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (585)
+|++++|.+.... . +..+++|+.|+++++.... ...+++|+.|+++++. ++... ...++
T Consensus 62 ~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~l~~-----l~~~~~L~~L~l~~n~---------l~~~~----~~~~~ 120 (317)
T 3o53_A 62 LLNLSSNVLYETL--D-LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNN---------ISRVS----CSRGQ 120 (317)
T ss_dssp EEECTTSCCEEEE--E-ETTCTTCCEEECCSSEEEE-----EEECTTCCEEECCSSC---------CSEEE----ECCCS
T ss_pred EEECCCCcCCcch--h-hhhcCCCCEEECcCCcccc-----ccCCCCcCEEECCCCc---------cCCcC----ccccC
Confidence 9999999865432 1 6788999999999762111 1244899999999975 33321 12378
Q ss_pred cchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHH
Q 007916 387 RLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYI 465 (585)
Q Consensus 387 ~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l 465 (585)
+|+.|.++.+.++......+ ..+++|++|++++|. +++ .....+...+++|++|++++ .+++.. ..
T Consensus 121 ~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~------l~~----~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~ 187 (317)
T 3o53_A 121 GKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLNE------IDT----VNFAELAASSDTLEHLNLQYNFIYDVK--GQ 187 (317)
T ss_dssp SCEEEECCSSCCCSGGGBCT-GGGSSEEEEECTTSC------CCE----EEGGGGGGGTTTCCEEECTTSCCCEEE--CC
T ss_pred CCCEEECCCCCCCCccchhh-hccCCCCEEECCCCC------CCc----ccHHHHhhccCcCCEEECCCCcCcccc--cc
Confidence 89999998898876433233 368999999999764 442 11222345679999999988 544331 11
Q ss_pred hhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccCHHHHHHHHhhCC
Q 007916 466 GKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMNACRRLAKQMP 545 (585)
Q Consensus 466 ~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it~~~~~~~~~~~p 545 (585)
. .+++|+.|++++|.++.. ...+..+++|+.|++++|.++. ++..+..+++|+.|++++|+++...+......+|
T Consensus 188 ~-~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~ 262 (317)
T 3o53_A 188 V-VFAKLKTLDLSSNKLAFM--GPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (317)
T ss_dssp C-CCTTCCEEECCSSCCCEE--CGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred c-ccccCCEEECCCCcCCcc--hhhhcccCcccEEECcCCcccc--hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccc
Confidence 1 488999999999998753 2235788999999999999964 3445678899999999999998555666666666
Q ss_pred CCc
Q 007916 546 RLN 548 (585)
Q Consensus 546 ~l~ 548 (585)
.+.
T Consensus 263 ~L~ 265 (317)
T 3o53_A 263 RVQ 265 (317)
T ss_dssp HHH
T ss_pred cce
Confidence 553
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.47 E-value=1.8e-15 Score=144.85 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=39.6
Q ss_pred cCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcC-cCCcEEEccccccC
Q 007916 468 YAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKY-ESMRSLWMSACNVT 533 (585)
Q Consensus 468 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l-~~L~~L~l~~~~it 533 (585)
.+++|+.|++++|.+++.... .+..+++|+.|++++|.++... +..+..+ ++|++|+|++|+++
T Consensus 197 ~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~-~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 197 SLSSLQVLNMSHNNFFSLDTF-PYKCLNSLQVLDYSLNHIMTSK-KQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp TCTTCCEEECTTSCCSBCCSG-GGTTCTTCCEEECTTSCCCBCS-SSSCCCCCTTCCEEECTTCCEE
T ss_pred CCCCCCEEECCCCccCccChh-hccCcccCCEeECCCCCCcccC-HHHHHhhhccCCEEEccCCCee
Confidence 456666666666665442211 1356788888888888874431 1233455 47888888888754
No 64
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.45 E-value=3.1e-15 Score=143.38 Aligned_cols=130 Identities=12% Similarity=0.120 Sum_probs=67.6
Q ss_pred CCCcEEEecccccCh--HHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccC
Q 007916 119 PFLEELRLKRMAVSD--ESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPES 196 (585)
Q Consensus 119 ~~L~~L~l~~~~l~~--~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 196 (585)
.++++|+++++.++. .....+.. +++|++|+++++..+. ..++..+..+++|++|++++|.+++... .....
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~-l~~L~~L~L~~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLV-GPIPPAIAKLTQLHYLYITHTNVSGAIP----DFLSQ 123 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEE-SCCCGGGGGCTTCSEEEEEEECCEEECC----GGGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhC-CCCCCeeeCCCCCccc-ccCChhHhcCCCCCEEECcCCeeCCcCC----HHHhC
Confidence 456666666665553 22223333 6666666666422221 1122223466666777766666553211 11235
Q ss_pred CCCcCEEEeccCCCC--CChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhCC-ccccccCccc
Q 007916 197 FTSLEVLNFANLTSE--VNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAP-QLEELGTGSF 259 (585)
Q Consensus 197 ~~~L~~L~l~~~~~~--~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~ 259 (585)
+++|++|+++++... ++.. +..+++|++|++++|.....++..+..++ +|+.|++..+
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~-----~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPS-----ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGG-----GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred CCCCCEEeCCCCccCCcCChH-----HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence 666666666665422 2222 45566677777666654334444555555 6666666554
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.45 E-value=2.1e-13 Score=141.68 Aligned_cols=79 Identities=22% Similarity=0.192 Sum_probs=51.8
Q ss_pred CCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHH
Q 007916 410 CPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQ 488 (585)
Q Consensus 410 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~ 488 (585)
+++|+.|++++|. ++..+ ..+++|+.|++++ .++. +...+++|+.|++++|.++. +.
T Consensus 220 ~~~L~~L~Ls~N~------L~~lp---------~~l~~L~~L~Ls~N~L~~-----lp~~~~~L~~L~Ls~N~L~~--lp 277 (622)
T 3g06_A 220 PSGLKELIVSGNR------LTSLP---------VLPSELKELMVSGNRLTS-----LPMLPSGLLSLSVYRNQLTR--LP 277 (622)
T ss_dssp CTTCCEEECCSSC------CSCCC---------CCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCCS--CC
T ss_pred CCCCCEEEccCCc------cCcCC---------CCCCcCcEEECCCCCCCc-----CCcccccCcEEeCCCCCCCc--CC
Confidence 4677777777553 33211 3456788888876 3331 11256788888888888763 44
Q ss_pred HHHhcCCCccEEEecCCCCChH
Q 007916 489 CVLEGCPKLRKLEIRDCPFGNE 510 (585)
Q Consensus 489 ~l~~~~~~L~~L~l~~~~~~~~ 510 (585)
..+..+++|+.|++++|+++..
T Consensus 278 ~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 278 ESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp GGGGGSCTTCEEECCSCCCCHH
T ss_pred HHHhhccccCEEEecCCCCCCc
Confidence 4467788899999998888654
No 66
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.44 E-value=9e-15 Score=141.73 Aligned_cols=128 Identities=14% Similarity=0.080 Sum_probs=83.5
Q ss_pred CCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCC
Q 007916 118 YPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESF 197 (585)
Q Consensus 118 ~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 197 (585)
.++++.|+++++.++......+. .+++|++|++++|. ++.. .+..+..+++|++|++++|.++..+.. ..
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~-------~~ 122 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFK-GLQHLYALVLVNNK-ISKI-HEKAFSPLRKLQKLYISKNHLVEIPPN-------LP 122 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSC-CCEE-CGGGSTTCTTCCEEECCSSCCCSCCSS-------CC
T ss_pred CCCCeEEECCCCcCCccCHhHhh-CCCCCcEEECCCCc-cCcc-CHhHhhCcCCCCEEECCCCcCCccCcc-------cc
Confidence 36889999998877653322333 37889999998865 4321 133345789999999999887654322 12
Q ss_pred CCcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcchh--HHHHHHHhCCccccccCcccc
Q 007916 198 TSLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSISLE--QLQRLLVRAPQLEELGTGSFL 260 (585)
Q Consensus 198 ~~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~ 260 (585)
++|++|+++++... ++... +..+++|+.|++++|.... ..+..+..+ +|+.|++..+.
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGV----FSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGG----GSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred ccCCEEECCCCccCccCHhH----hCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence 78999999887533 22221 5678899999998876432 123333444 77777777653
No 67
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.44 E-value=7.9e-14 Score=136.34 Aligned_cols=113 Identities=11% Similarity=0.091 Sum_probs=71.3
Q ss_pred CccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHH
Q 007916 385 CRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFE 463 (585)
Q Consensus 385 ~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~ 463 (585)
+++|++|+++.+.++... ......+++|++|+++++.. ++.+ ...+. ....++.++.+++++ .+++..+.
T Consensus 197 l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l------~~~~-~~~l~-~~~~~~~l~~l~L~~~~l~~~~l~ 267 (353)
T 2z80_A 197 IQNVSHLILHMKQHILLL-EIFVDVTSSVECLELRDTDL------DTFH-FSELS-TGETNSLIKKFTFRNVKITDESLF 267 (353)
T ss_dssp CSEEEEEEEECSCSTTHH-HHHHHHTTTEEEEEEESCBC------TTCC-CC-------CCCCCCEEEEESCBCCHHHHH
T ss_pred cccCCeecCCCCccccch-hhhhhhcccccEEECCCCcc------cccc-ccccc-cccccchhhccccccccccCcchh
Confidence 455555555555554322 22333678888888886643 2111 01111 123457788888887 77777665
Q ss_pred HHh---hcCccccceecccccCChHHHHH-HHhcCCCccEEEecCCCCC
Q 007916 464 YIG---KYAKNLETLSVAFAGRSDRGMQC-VLEGCPKLRKLEIRDCPFG 508 (585)
Q Consensus 464 ~l~---~~~~~L~~L~l~~~~i~~~~l~~-l~~~~~~L~~L~l~~~~~~ 508 (585)
.+. ..+++|+.|++++|+++. +.. ++..+++|++|++++|+++
T Consensus 268 ~l~~~l~~l~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 268 QVMKLLNQISGLLELEFSRNQLKS--VPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp HHHHHHHTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhHHHHhcccCCCEEECCCCCCCc--cCHHHHhcCCCCCEEEeeCCCcc
Confidence 543 368899999999998864 332 2467899999999999983
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.43 E-value=1.2e-14 Score=148.00 Aligned_cols=80 Identities=18% Similarity=0.142 Sum_probs=43.7
Q ss_pred CCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCc
Q 007916 445 CSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMR 523 (585)
Q Consensus 445 ~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~ 523 (585)
+++|+.|++++ .++.-... +. .+++|+.|++++|.++. ++..+..+++|+.|++++|+++...++..+..++.|+
T Consensus 190 l~~L~~L~Ls~N~l~~~~~~-~~-~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~ 265 (487)
T 3oja_A 190 FAKLKTLDLSSNKLAFMGPE-FQ-SAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (487)
T ss_dssp CTTCCEEECCSSCCCEECGG-GG-GGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHH
T ss_pred CCCCCEEECCCCCCCCCCHh-Hc-CCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCc
Confidence 45566666655 33321111 22 45666666666666553 3333445666777777777665444555566666665
Q ss_pred EEEcc
Q 007916 524 SLWMS 528 (585)
Q Consensus 524 ~L~l~ 528 (585)
.+++.
T Consensus 266 ~l~~~ 270 (487)
T 3oja_A 266 TVAKQ 270 (487)
T ss_dssp HHHHH
T ss_pred EEecc
Confidence 55553
No 69
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.43 E-value=2e-12 Score=126.12 Aligned_cols=176 Identities=15% Similarity=0.146 Sum_probs=116.2
Q ss_pred CCCcEEEecCCCCCchhhccccChhhHHHHHhcCccchhhhccCCCCCHHHHHHHHH----hCCCCceEEeeccCCCCCC
Q 007916 352 PLLEELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQ----NCPNFTHFRLCIMTPGLPD 427 (585)
Q Consensus 352 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~----~~~~L~~L~l~~~~~~~~~ 427 (585)
++|++|++++|. +++.++..+...+++|+.|+++.+.+++.....++. .+++|++|++++|.
T Consensus 101 ~~L~~L~Ls~n~---------l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~----- 166 (372)
T 3un9_A 101 HALDEVNLASCQ---------LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP----- 166 (372)
T ss_dssp SCEEEEECTTCC---------CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-----
T ss_pred CCceEEEecCCC---------CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-----
Confidence 466666666654 666666665555666666766667777666666553 35778888888653
Q ss_pred CCCCCcchhhHHH---HHhcCCCCcEEEccc-CCChhHHHHHhh---cCccccceecccccCChHHHHHHHh---cCCCc
Q 007916 428 YLTNEPMDEAFGA---VVKTCSKLQRLSVSG-LLTDLTFEYIGK---YAKNLETLSVAFAGRSDRGMQCVLE---GCPKL 497 (585)
Q Consensus 428 ~l~~~~~~~~l~~---~~~~~~~L~~L~l~~-~~~~~~~~~l~~---~~~~L~~L~l~~~~i~~~~l~~l~~---~~~~L 497 (585)
++ +.+... .+..++.|++|++++ .+++.+...++. .+++|+.|+|++|.+++.+...+.. .+++|
T Consensus 167 -l~----~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L 241 (372)
T 3un9_A 167 -LT----AAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSL 241 (372)
T ss_dssp -CH----HHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSC
T ss_pred -CC----hHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCC
Confidence 44 344333 345678899999988 788887766653 4678999999999999887766544 57899
Q ss_pred cEEEecCCCCChHHHHHHHhcC-cC---CcEEE--ccccccCHH---HHHHHHhhCCC
Q 007916 498 RKLEIRDCPFGNEALLSGLEKY-ES---MRSLW--MSACNVTMN---ACRRLAKQMPR 546 (585)
Q Consensus 498 ~~L~l~~~~~~~~~l~~~~~~l-~~---L~~L~--l~~~~it~~---~~~~~~~~~p~ 546 (585)
++|++++|.+++.++..+.... +. |+.+. +.++.+++. .+..+.+..+.
T Consensus 242 ~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~~~~~l~~l~~~~~~ 299 (372)
T 3un9_A 242 ELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNS 299 (372)
T ss_dssp CEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHHHHHHHHHHHHHSTT
T ss_pred CEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHHHHHHHHHHHHHhhh
Confidence 9999999999888876554322 12 77777 777777654 33344444444
No 70
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.41 E-value=2e-14 Score=138.56 Aligned_cols=226 Identities=18% Similarity=0.189 Sum_probs=125.3
Q ss_pred hCCCccEEEecCCCCcccCccCCCCCCCchHHHHHHHHhhCCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCC
Q 007916 78 RFPNIRSVTLKGKPRFSDFNLVPPNWGADIHAWLVAFAAKYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGF 157 (585)
Q Consensus 78 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~ 157 (585)
..++++.|++.++. +. .++.. ...+++|++|+++++.++. ....+. .+++|++|++++|. +
T Consensus 79 ~~~~l~~L~L~~n~-l~---~lp~~------------l~~l~~L~~L~L~~n~l~~-lp~~~~-~l~~L~~L~Ls~n~-l 139 (328)
T 4fcg_A 79 TQPGRVALELRSVP-LP---QFPDQ------------AFRLSHLQHMTIDAAGLME-LPDTMQ-QFAGLETLTLARNP-L 139 (328)
T ss_dssp TSTTCCEEEEESSC-CS---SCCSC------------GGGGTTCSEEEEESSCCCC-CCSCGG-GGTTCSEEEEESCC-C
T ss_pred cccceeEEEccCCC-ch---hcChh------------hhhCCCCCEEECCCCCccc-hhHHHh-ccCCCCEEECCCCc-c
Confidence 35777888887653 21 11211 1236778888888776652 222232 36778888887764 4
Q ss_pred CHHHHHHHHHhCCCCCEEEcccCCCCcccccccc-----ccccCCCCcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEE
Q 007916 158 STDGLAAIATHCKNLTELDIQENGIEDSSGSWLS-----CFPESFTSLEVLNFANLTSE-VNTDALERLVSRCKSLKVLK 231 (585)
Q Consensus 158 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~-----~~~~~~~~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~ 231 (585)
+ .++..+..+++|++|++++|.+.......+. .....+++|++|+++++... ++.. +..+++|++|+
T Consensus 140 ~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-----l~~l~~L~~L~ 212 (328)
T 4fcg_A 140 R--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS-----IANLQNLKSLK 212 (328)
T ss_dssp C--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG-----GGGCTTCCEEE
T ss_pred c--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHh-----hcCCCCCCEEE
Confidence 3 3344455777888888887654333211111 01124677777777776532 3332 56677777777
Q ss_pred ecCCcchhHHHHHHHhCCccccccCcccccccCCCchhhHHHHhhcCCcccccccccccCcCCHHHHhhcCCCCcEEEec
Q 007916 232 VNKSISLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLS 311 (585)
Q Consensus 232 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~ 311 (585)
+++|... .++..+..+++|++|++.++... ..++..+..+++|++|+++
T Consensus 213 L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~------------------------------~~~p~~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 213 IRNSPLS-ALGPAIHHLPKLEELDLRGCTAL------------------------------RNYPPIFGGRAPLKRLILK 261 (328)
T ss_dssp EESSCCC-CCCGGGGGCTTCCEEECTTCTTC------------------------------CBCCCCTTCCCCCCEEECT
T ss_pred ccCCCCC-cCchhhccCCCCCEEECcCCcch------------------------------hhhHHHhcCCCCCCEEECC
Confidence 7776532 33334556666666666553211 1122234456677777777
Q ss_pred ccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecC
Q 007916 312 YTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFP 361 (585)
Q Consensus 312 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~ 361 (585)
+|.+... ++..+..+++|+.|++++|.....++..+..+++|+.+.+..
T Consensus 262 ~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 262 DCSNLLT-LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TCTTCCB-CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCCchhh-cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 6653322 222345666777777766544444555556666666666654
No 71
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.41 E-value=3e-13 Score=114.05 Aligned_cols=104 Identities=13% Similarity=0.322 Sum_probs=91.5
Q ss_pred CCCcEEEccc-CCChhHHHHHhhcCccccceeccccc-CChHHHHHHHhc---CCCccEEEecCCC-CChHHHHHHHhcC
Q 007916 446 SKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAG-RSDRGMQCVLEG---CPKLRKLEIRDCP-FGNEALLSGLEKY 519 (585)
Q Consensus 446 ~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~l~~l~~~---~~~L~~L~l~~~~-~~~~~l~~~~~~l 519 (585)
..|+.|++++ .++|.++..+. .|++|++|+|++|. +||.|+..+... |++|++|++++|. +||.++.. +..|
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~-L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA-LHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH-GGGC
T ss_pred ceEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH-HhcC
Confidence 4689999998 89999998886 89999999999995 999999998763 6799999999997 69999955 5689
Q ss_pred cCCcEEEccccc-cCHHH--HHHHHhhCCCCcEEE
Q 007916 520 ESMRSLWMSACN-VTMNA--CRRLAKQMPRLNVEV 551 (585)
Q Consensus 520 ~~L~~L~l~~~~-it~~~--~~~~~~~~p~l~~~~ 551 (585)
++|++|+|++|+ ||+.| +..+.+.+|++.|..
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V~~ 173 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELKL 173 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEEEE
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCcEEEe
Confidence 999999999998 99865 789999999998864
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.41 E-value=9.2e-15 Score=140.12 Aligned_cols=182 Identities=14% Similarity=0.120 Sum_probs=119.1
Q ss_pred hcCCCCcEEEecccccCChhHHHHHhc-----CCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccC
Q 007916 300 NSCANLTFLNLSYTALQSGEFAKLVVH-----CPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVT 374 (585)
Q Consensus 300 ~~~~~L~~L~l~~~~~~~~~l~~~~~~-----~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 374 (585)
..+++|++|++++|.++.. +..+.. +++|++|+++++.........+..+++|++|++++|. +.
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~---------l~ 186 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR--DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP---------EL 186 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS--SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT---------TC
T ss_pred hcCCCccEEEccCCCCcch--hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC---------cC
Confidence 4577888888888875543 122222 2788888888763333222334567888888888864 33
Q ss_pred hh-hHHHHH--hcCccchhhhccCCCCCH--HHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCc
Q 007916 375 EE-GFVAVS--FGCRRLHYVLYFCRQMTN--AAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQ 449 (585)
Q Consensus 375 ~~-~~~~~~--~~~~~L~~L~~~~~~l~~--~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~ 449 (585)
.. ++..-. ..+++|++|+++.+.++. .....+...+++|++|++++|...+..... ....+++|+
T Consensus 187 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----------~~~~l~~L~ 256 (312)
T 1wwl_A 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP----------SCDWPSQLN 256 (312)
T ss_dssp HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS----------CCCCCTTCC
T ss_pred cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh----------hhhhcCCCC
Confidence 21 121111 457888888888888872 344455567899999999977542211001 123468999
Q ss_pred EEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCCh
Q 007916 450 RLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGN 509 (585)
Q Consensus 450 ~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~ 509 (585)
.|++++ .++ ..... ..++|+.|++++|++++. .. +..+++|++|++++|++++
T Consensus 257 ~L~Ls~N~l~-~ip~~---~~~~L~~L~Ls~N~l~~~--p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 257 SLNLSFTGLK-QVPKG---LPAKLSVLDLSYNRLDRN--PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEECTTSCCS-SCCSS---CCSEEEEEECCSSCCCSC--CC-TTTSCEEEEEECTTCTTTC
T ss_pred EEECCCCccC-hhhhh---ccCCceEEECCCCCCCCC--hh-HhhCCCCCEEeccCCCCCC
Confidence 999988 444 11111 227999999999998764 33 6789999999999999864
No 73
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.41 E-value=2.8e-15 Score=143.63 Aligned_cols=108 Identities=19% Similarity=0.164 Sum_probs=66.4
Q ss_pred CCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHH-HHHHHHhCCCCCEEEcccCCCCccccccccccccCC
Q 007916 119 PFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDG-LAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESF 197 (585)
Q Consensus 119 ~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~-l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 197 (585)
+++++|+++++.++.... .+...+++|++|+++++. ++..+ .+.....+++|++|++++|.++..+. ....+
T Consensus 28 ~~l~~L~L~~n~l~~i~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~-----~~~~l 100 (306)
T 2z66_A 28 SSATRLELESNKLQSLPH-GVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-----NFLGL 100 (306)
T ss_dssp TTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCSEEEEEE-----EEETC
T ss_pred CCCCEEECCCCccCccCH-hHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCccccChh-----hcCCC
Confidence 578888888887664221 222347888999988865 43211 11223368889999998887665322 12467
Q ss_pred CCcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCc
Q 007916 198 TSLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSI 236 (585)
Q Consensus 198 ~~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~ 236 (585)
++|++|+++++... ++. ...+..+++|++|++++|.
T Consensus 101 ~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~ 137 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTH 137 (306)
T ss_dssp TTCCEEECTTSEEESSTT---TTTTTTCTTCCEEECTTSC
T ss_pred CCCCEEECCCCccccccc---chhhhhccCCCEEECCCCc
Confidence 88888888776422 111 0115567778888877765
No 74
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.40 E-value=1.2e-14 Score=140.14 Aligned_cols=36 Identities=8% Similarity=0.037 Sum_probs=21.5
Q ss_pred hCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc
Q 007916 409 NCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG 455 (585)
Q Consensus 409 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~ 455 (585)
.+++|++|++++|.. .. .++..+.++++|+.+.+..
T Consensus 275 ~l~~L~~L~L~~n~~-----~~------~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 275 RLTQLEKLDLRGCVN-----LS------RLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp GCTTCCEEECTTCTT-----CC------CCCGGGGGSCTTCEEECCG
T ss_pred cCCCCCEEeCCCCCc-----hh------hccHHHhhccCceEEeCCH
Confidence 667777777776543 11 1222345677777777765
No 75
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.39 E-value=3e-14 Score=134.80 Aligned_cols=207 Identities=14% Similarity=0.088 Sum_probs=140.4
Q ss_pred CCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHHHH
Q 007916 302 CANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAV 381 (585)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 381 (585)
.++|++|+++++.+.... ...+..+++|+.|++.++.........+..+++|+.|+++++..... +... .
T Consensus 31 ~~~l~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~-----~~~~---~- 100 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS-----VDPA---T- 100 (285)
T ss_dssp CTTCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC-----CCTT---T-
T ss_pred CCCceEEEeeCCcCCccC-HHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccc-----cCHH---H-
Confidence 468899999988765431 22346788999999987633222233456778899999988631110 1111 1
Q ss_pred HhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChh
Q 007916 382 SFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDL 460 (585)
Q Consensus 382 ~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~ 460 (585)
...+++|++|++..+.++......+ ..+++|++|+++++.. +..+ ...+..+++|+.|++++ .++..
T Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l------~~~~-----~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCGLQELGPGLF-RGLAALQYLYLQDNAL------QALP-----DDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTT-TTCTTCCEEECCSSCC------CCCC-----TTTTTTCTTCCEEECCSSCCCEE
T ss_pred hcCCcCCCEEECCCCcCCEECHhHh-hCCcCCCEEECCCCcc------cccC-----HhHhccCCCccEEECCCCccccc
Confidence 1247888899888787764322222 3789999999997653 3111 11245678999999988 55543
Q ss_pred HHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccC
Q 007916 461 TFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVT 533 (585)
Q Consensus 461 ~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it 533 (585)
....+. .+++|+.|++++|.+++... ..+..+++|+.|++++|.+++. ....+..+++|++|++++|+++
T Consensus 169 ~~~~~~-~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 169 PERAFR-GLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSAL-PTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CTTTTT-TCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCC-CHHHHTTCTTCCEEECCSSCEE
T ss_pred CHHHhc-CccccCEEECCCCcccccCH-hHccCcccccEeeCCCCcCCcC-CHHHcccCcccCEEeccCCCcc
Confidence 332333 68999999999999866432 2346789999999999999653 2256789999999999999854
No 76
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.36 E-value=2.3e-14 Score=145.08 Aligned_cols=206 Identities=13% Similarity=0.038 Sum_probs=136.1
Q ss_pred hhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhH
Q 007916 299 YNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGF 378 (585)
Q Consensus 299 ~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 378 (585)
+..+++|++|++++|.+... ....+..+++|+.|+++++.........+..+++|++|++++|. ++....
T Consensus 95 ~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~---------l~~~~~ 164 (452)
T 3zyi_A 95 FRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP---------IESIPS 164 (452)
T ss_dssp TTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC---------CCEECT
T ss_pred cCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC---------cceeCH
Confidence 45678888888888875543 12334677888888888763322222334567889999998865 322111
Q ss_pred HHHHhcCccchhhhccC-CCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-C
Q 007916 379 VAVSFGCRRLHYVLYFC-RQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-L 456 (585)
Q Consensus 379 ~~~~~~~~~L~~L~~~~-~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~ 456 (585)
.. ...+++|+.|+++. +.++..... ....+++|++|++++|.. ++.+ -+..+++|+.|++++ .
T Consensus 165 ~~-~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l------~~~~-------~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 165 YA-FNRVPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMCNI------KDMP-------NLTPLVGLEELEMSGNH 229 (452)
T ss_dssp TT-TTTCTTCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTTSCC------SSCC-------CCTTCTTCCEEECTTSC
T ss_pred hH-HhcCCcccEEeCCCCCCccccChh-hccCCCCCCEEECCCCcc------cccc-------cccccccccEEECcCCc
Confidence 11 22478888886644 444322111 223788999999997653 3211 134678999999988 5
Q ss_pred CChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEcccccc
Q 007916 457 LTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNV 532 (585)
Q Consensus 457 ~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i 532 (585)
+++.....+. .+++|+.|++++|.++..... .+..+++|+.|++++|.++... ...+..+++|++|+|++|++
T Consensus 230 l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 230 FPEIRPGSFH-GLSSLKKLWVMNSQVSLIERN-AFDGLASLVELNLAHNNLSSLP-HDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CSEECGGGGT-TCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSCCC-TTSSTTCTTCCEEECCSSCE
T ss_pred CcccCccccc-CccCCCEEEeCCCcCceECHH-HhcCCCCCCEEECCCCcCCccC-hHHhccccCCCEEEccCCCc
Confidence 5544344444 788999999999987653222 3477899999999999985321 23456789999999999984
No 77
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.35 E-value=2.5e-14 Score=144.29 Aligned_cols=206 Identities=12% Similarity=0.055 Sum_probs=135.1
Q ss_pred hhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhH
Q 007916 299 YNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGF 378 (585)
Q Consensus 299 ~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 378 (585)
+..+++|++|++++|.+.... ...+..+++|+.|+++++.........+..+++|+.|+++++. ++....
T Consensus 84 ~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~---------i~~~~~ 153 (440)
T 3zyj_A 84 FKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP---------IESIPS 153 (440)
T ss_dssp TSSCSSCCEEECCSSCCCEEC-GGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC---------CCEECT
T ss_pred hhCCCCCCEEECCCCcCCccC-hhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc---------ccccCH
Confidence 456788888888888755431 2335678888888888763222222234567888889888865 322211
Q ss_pred HHHHhcCccchhhhccC-CCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-C
Q 007916 379 VAVSFGCRRLHYVLYFC-RQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-L 456 (585)
Q Consensus 379 ~~~~~~~~~L~~L~~~~-~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~ 456 (585)
..+ ..+++|++|++.. +.++.... .....+++|++|++++|.. +..+ -+..+++|+.|++++ .
T Consensus 154 ~~~-~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l------~~~~-------~~~~l~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 154 YAF-NRIPSLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCNL------REIP-------NLTPLIKLDELDLSGNH 218 (440)
T ss_dssp TTT-TTCTTCCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTSCC------SSCC-------CCTTCSSCCEEECTTSC
T ss_pred HHh-hhCcccCEeCCCCCCCcceeCc-chhhcccccCeecCCCCcC------cccc-------ccCCCcccCEEECCCCc
Confidence 111 2477888886654 44432111 1223688999999987653 3221 135678999999987 5
Q ss_pred CChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEcccccc
Q 007916 457 LTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNV 532 (585)
Q Consensus 457 ~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i 532 (585)
+++.....+. .+++|+.|++++|.+++.... .+..+++|+.|++++|.++... ...+..+++|+.|+|++|++
T Consensus 219 l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 219 LSAIRPGSFQ-GLMHLQKLWMIQSQIQVIERN-AFDNLQSLVEINLAHNNLTLLP-HDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCEECTTTTT-TCTTCCEEECTTCCCCEECTT-SSTTCTTCCEEECTTSCCCCCC-TTTTSSCTTCCEEECCSSCE
T ss_pred cCccChhhhc-cCccCCEEECCCCceeEEChh-hhcCCCCCCEEECCCCCCCccC-hhHhccccCCCEEEcCCCCc
Confidence 5544333333 788999999999988654322 3467899999999999985432 24457789999999999984
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.35 E-value=8.1e-14 Score=141.84 Aligned_cols=212 Identities=13% Similarity=0.080 Sum_probs=149.4
Q ss_pred HHhhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChh
Q 007916 297 ALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEE 376 (585)
Q Consensus 297 ~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 376 (585)
..+..+++|++|++++|.++...- +..+++|+.|+++++.... +...++|+.|++++|. ++..
T Consensus 52 ~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~-----l~~~~~L~~L~L~~N~---------l~~~ 114 (487)
T 3oja_A 52 ADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNN---------ISRV 114 (487)
T ss_dssp GGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEE-----EEECTTCCEEECCSSC---------CCCE
T ss_pred HHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCC-----CCCCCCcCEEECcCCc---------CCCC
Confidence 345678999999999988654221 6778999999998762111 1234789999999875 3322
Q ss_pred hHHHHHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-
Q 007916 377 GFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG- 455 (585)
Q Consensus 377 ~~~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~- 455 (585)
.. ..+++|+.|.++.+.++......+. .+++|+.|++++|. +++ .....+...+++|+.|++++
T Consensus 115 ~~----~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~------l~~----~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 115 SC----SRGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNE------IDT----VNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EE----CCCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSC------CCE----EEGGGGGGGTTTCCEEECTTS
T ss_pred Cc----cccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCC------CCC----cChHHHhhhCCcccEEecCCC
Confidence 11 2368899998888888764333333 68999999999664 442 11222344689999999988
Q ss_pred CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccCHH
Q 007916 456 LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMN 535 (585)
Q Consensus 456 ~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it~~ 535 (585)
.+++.. ... .+++|+.|++++|.++. +...+..+++|+.|++++|.++. ++..+..+++|+.|++++|+++..
T Consensus 180 ~l~~~~--~~~-~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 180 FIYDVK--GQV-VFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp CCCEEE--CCC-CCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBCHH
T ss_pred cccccc--ccc-cCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCcCc
Confidence 554331 111 58999999999999875 32335788999999999999964 444567889999999999999865
Q ss_pred HHHHHHhhCCCC
Q 007916 536 ACRRLAKQMPRL 547 (585)
Q Consensus 536 ~~~~~~~~~p~l 547 (585)
.+......++.+
T Consensus 253 ~~~~~~~~l~~L 264 (487)
T 3oja_A 253 TLRDFFSKNQRV 264 (487)
T ss_dssp HHHHHHTTCHHH
T ss_pred chHHHHHhCCCC
Confidence 555555555544
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.35 E-value=9.2e-13 Score=125.72 Aligned_cols=192 Identities=19% Similarity=0.156 Sum_probs=139.2
Q ss_pred cCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHHH
Q 007916 301 SCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVA 380 (585)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 380 (585)
.+++|++|+++++.+... + .+..+++|+.|+++++.... +.. +..+++|+.|+++++. ++... .
T Consensus 39 ~l~~L~~L~l~~~~i~~l--~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~---------l~~~~--~ 102 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI--E-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNP---------LKNVS--A 102 (308)
T ss_dssp HHHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCC---------CSCCG--G
T ss_pred HcCCcCEEEeeCCCccCc--h-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCc---------CCCch--h
Confidence 467889999988876542 2 25678899999998762221 112 5778899999999875 33321 1
Q ss_pred HHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCCh
Q 007916 381 VSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTD 459 (585)
Q Consensus 381 ~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~ 459 (585)
...+++|++|+++.+.+++.. . ...+++|++|++++|. +++.+ . +..+++|+.|++++ .+++
T Consensus 103 -~~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n~------l~~~~---~----l~~l~~L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 103 -IAGLQSIKTLDLTSTQITDVT--P-LAGLSNLQVLYLDLNQ------ITNIS---P----LAGLTNLQYLSIGNAQVSD 165 (308)
T ss_dssp -GTTCTTCCEEECTTSCCCCCG--G-GTTCTTCCEEECCSSC------CCCCG---G----GGGCTTCCEEECCSSCCCC
T ss_pred -hcCCCCCCEEECCCCCCCCch--h-hcCCCCCCEEECCCCc------cCcCc---c----ccCCCCccEEEccCCcCCC
Confidence 234788899988888887532 2 3488999999999764 44211 1 56789999999988 5554
Q ss_pred hHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccCH
Q 007916 460 LTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTM 534 (585)
Q Consensus 460 ~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it~ 534 (585)
... + ..+++|+.|++++|.+++.. . +..+++|++|++++|.+++.. .+..+++|+.|++++|+++.
T Consensus 166 ~~~--l-~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 166 LTP--L-ANLSKLTTLKADDNKISDIS--P-LASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CGG--G-TTCTTCCEEECCSSCCCCCG--G-GGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEEEEEC
T ss_pred Chh--h-cCCCCCCEEECCCCccCcCh--h-hcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCCeeec
Confidence 322 3 37899999999999987633 2 578999999999999995542 26889999999999999765
No 80
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.33 E-value=2.8e-13 Score=137.10 Aligned_cols=201 Identities=16% Similarity=0.092 Sum_probs=129.3
Q ss_pred CCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCC
Q 007916 119 PFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFT 198 (585)
Q Consensus 119 ~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~ 198 (585)
++++.|+++++.++......+. .+++|+.|+++++. ++.. .+..+..+++|++|+|++|.++..+... ...++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~ 147 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFR-HLHHLEVLQLGRNS-IRQI-EVGAFNGLASLNTLELFDNWLTVIPSGA----FEYLS 147 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTT-TCTTCCEEECCSSC-CCEE-CTTTTTTCTTCCEEECCSSCCSBCCTTT----SSSCT
T ss_pred CCccEEECcCCcCceECHHHcC-CCCCCCEEECCCCc-cCCc-ChhhccCcccCCEEECCCCcCCccChhh----hcccC
Confidence 6899999999877664333333 37889999999864 4322 1233457899999999999887654332 35688
Q ss_pred CcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcchhHHH-HHHHhCCccccccCcccccccCCCchhhHHHHhh
Q 007916 199 SLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSISLEQLQ-RLLVRAPQLEELGTGSFLQDLTARPYADLESAFN 276 (585)
Q Consensus 199 ~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 276 (585)
+|++|+++++... ++.. .+..+++|+.|++++|..+..++ ..+..+++|+.|++..+.....
T Consensus 148 ~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------------ 211 (452)
T 3zyi_A 148 KLRELWLRNNPIESIPSY----AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM------------ 211 (452)
T ss_dssp TCCEEECCSCCCCEECTT----TTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC------------
T ss_pred CCCEEECCCCCcceeCHh----HHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc------------
Confidence 9999999887633 2222 16678999999999876665543 3466788888888876532210
Q ss_pred cCCcccccccccccCcCCHHHHhhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcE
Q 007916 277 NCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEE 356 (585)
Q Consensus 277 ~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~ 356 (585)
+ .+..+++|++|++++|.+... .+..+..+++|+.|++.++.........+..+++|+.
T Consensus 212 -------------------~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 270 (452)
T 3zyi_A 212 -------------------P-NLTPLVGLEELEMSGNHFPEI-RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270 (452)
T ss_dssp -------------------C-CCTTCTTCCEEECTTSCCSEE-CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred -------------------c-cccccccccEEECcCCcCccc-CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCE
Confidence 0 123456777777777765432 2233456677777777665322222233455677777
Q ss_pred EEecCCC
Q 007916 357 LRVFPAD 363 (585)
Q Consensus 357 L~l~~~~ 363 (585)
|++++|.
T Consensus 271 L~L~~N~ 277 (452)
T 3zyi_A 271 LNLAHNN 277 (452)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 7777764
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.32 E-value=2.4e-12 Score=123.20 Aligned_cols=186 Identities=13% Similarity=0.095 Sum_probs=92.5
Q ss_pred hcCCCCcEEEecccccCChh--HH-HHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChh
Q 007916 300 NSCANLTFLNLSYTALQSGE--FA-KLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEE 376 (585)
Q Consensus 300 ~~~~~L~~L~l~~~~~~~~~--l~-~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 376 (585)
..+++|++|++++|.+.... +. ..+..+++|+.|+++++.........+..+++|+.|++++|. +...
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~---------l~~~ 184 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNP---------GLGE 184 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCT---------TCHH
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCC---------Cccc
Confidence 34566777777776654311 11 112355666666666542222222223455667777777653 2221
Q ss_pred h-HH--HHHhcCccchhhhccCCCCC--HHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEE
Q 007916 377 G-FV--AVSFGCRRLHYVLYFCRQMT--NAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRL 451 (585)
Q Consensus 377 ~-~~--~~~~~~~~L~~L~~~~~~l~--~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L 451 (585)
. +. .....+++|++|.++.+.++ ......+...+++|++|++++|..
T Consensus 185 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l---------------------------- 236 (310)
T 4glp_A 185 RGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSL---------------------------- 236 (310)
T ss_dssp HHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCC----------------------------
T ss_pred hhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCC----------------------------
Confidence 1 11 00123455555555555554 222222233555566665554432
Q ss_pred EcccCCChhHHHHHhh--cCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccc
Q 007916 452 SVSGLLTDLTFEYIGK--YAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSA 529 (585)
Q Consensus 452 ~l~~~~~~~~~~~l~~--~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~ 529 (585)
++.....+.. .+++|+.|++++|+++. +... -.++|+.|++++|.++... ....+++|+.|+|++
T Consensus 237 ------~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~--~~~~L~~L~Ls~N~l~~~~---~~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 237 ------RATVNPSAPRCMWSSALNSLNLSFAGLEQ--VPKG--LPAKLRVLDLSSNRLNRAP---QPDELPEVDNLTLDG 303 (310)
T ss_dssp ------CCCCCSCCSSCCCCTTCCCEECCSSCCCS--CCSC--CCSCCSCEECCSCCCCSCC---CTTSCCCCSCEECSS
T ss_pred ------CccchhhHHhccCcCcCCEEECCCCCCCc--hhhh--hcCCCCEEECCCCcCCCCc---hhhhCCCccEEECcC
Confidence 2111111110 23577777777776652 2211 1367888888888775421 135677888888888
Q ss_pred cccCHH
Q 007916 530 CNVTMN 535 (585)
Q Consensus 530 ~~it~~ 535 (585)
|++++.
T Consensus 304 N~l~~~ 309 (310)
T 4glp_A 304 NPFLVP 309 (310)
T ss_dssp TTTSCC
T ss_pred CCCCCC
Confidence 877653
No 82
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.32 E-value=2.9e-13 Score=136.45 Aligned_cols=226 Identities=15% Similarity=0.090 Sum_probs=137.0
Q ss_pred CCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCC
Q 007916 119 PFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFT 198 (585)
Q Consensus 119 ~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~ 198 (585)
++++.|+|+++.++......+. .+++|++|+++++. ++... ...+..+++|++|+|++|.++..+... ...++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~-i~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~ 136 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFK-HLRHLEILQLSRNH-IRTIE-IGAFNGLANLNTLELFDNRLTTIPNGA----FVYLS 136 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTS-SCSSCCEEECCSSC-CCEEC-GGGGTTCSSCCEEECCSSCCSSCCTTT----SCSCS
T ss_pred CCCcEEEccCCcCCeeCHHHhh-CCCCCCEEECCCCc-CCccC-hhhccCCccCCEEECCCCcCCeeCHhH----hhccc
Confidence 6788999998876654333333 37889999998865 43221 233457889999999998877654322 25678
Q ss_pred CcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcchhHHH-HHHHhCCccccccCcccccccCCCchhhHHHHhh
Q 007916 199 SLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSISLEQLQ-RLLVRAPQLEELGTGSFLQDLTARPYADLESAFN 276 (585)
Q Consensus 199 ~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 276 (585)
+|++|+++++... ++... +..+++|+.|++++|..+..++ ..+..+++|+.|++..+.....
T Consensus 137 ~L~~L~L~~N~i~~~~~~~----~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~------------ 200 (440)
T 3zyj_A 137 KLKELWLRNNPIESIPSYA----FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI------------ 200 (440)
T ss_dssp SCCEEECCSCCCCEECTTT----TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC------------
T ss_pred cCceeeCCCCcccccCHHH----hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc------------
Confidence 8999999887533 22221 5678899999998876555543 3566788888888876532210
Q ss_pred cCCcccccccccccCcCCHHHHhhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcE
Q 007916 277 NCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEE 356 (585)
Q Consensus 277 ~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~ 356 (585)
+ .+..+++|++|++++|.+... .+..+..+++|+.|++.++.........+..+++|+.
T Consensus 201 -------------------~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 259 (440)
T 3zyj_A 201 -------------------P-NLTPLIKLDELDLSGNHLSAI-RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE 259 (440)
T ss_dssp -------------------C-CCTTCSSCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCE
T ss_pred -------------------c-ccCCCcccCEEECCCCccCcc-ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCE
Confidence 0 123456777777777765432 1223456677777777665322222223345677777
Q ss_pred EEecCCCCCchhhccccChhhHHHHHhcCccchhhhccCCCC
Q 007916 357 LRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQM 398 (585)
Q Consensus 357 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~l 398 (585)
|++++|. ++..... ....+++|+.|+++.|.+
T Consensus 260 L~L~~N~---------l~~~~~~-~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 260 INLAHNN---------LTLLPHD-LFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp EECTTSC---------CCCCCTT-TTSSCTTCCEEECCSSCE
T ss_pred EECCCCC---------CCccChh-HhccccCCCEEEcCCCCc
Confidence 7777764 2221111 112356677776555543
No 83
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.29 E-value=1e-12 Score=124.23 Aligned_cols=202 Identities=14% Similarity=0.061 Sum_probs=97.2
Q ss_pred CCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCC-CCccccccccccccCC
Q 007916 119 PFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENG-IEDSSGSWLSCFPESF 197 (585)
Q Consensus 119 ~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~ 197 (585)
+++++|+++++.++......+. .+++|++|+++++. ++.. .+..+..+++|++|++++|. ++..... ....+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~-~~~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~~l~~~~~~----~~~~l 104 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFR-ACRNLTILWLHSNV-LARI-DAAAFTGLALLEQLDLSDNAQLRSVDPA----TFHGL 104 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSC-CCEE-CTTTTTTCTTCCEEECCSCTTCCCCCTT----TTTTC
T ss_pred CCceEEEeeCCcCCccCHHHcc-cCCCCCEEECCCCc-ccee-CHhhcCCccCCCEEeCCCCCCccccCHH----HhcCC
Confidence 5677777777655543222222 25667777776653 3211 12223456777777777764 5443221 12356
Q ss_pred CCcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhCCccccccCcccccccCCCchhhHHHHhh
Q 007916 198 TSLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFN 276 (585)
Q Consensus 198 ~~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~ 276 (585)
++|++|+++++... +... .+..+++|++|++++|......+..+..+++|+.|++.++...
T Consensus 105 ~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------------- 166 (285)
T 1ozn_A 105 GRLHTLHLDRCGLQELGPG----LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-------------- 166 (285)
T ss_dssp TTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--------------
T ss_pred cCCCEEECCCCcCCEECHh----HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc--------------
Confidence 66777777665422 1111 1445666777777665422111222344445555554432110
Q ss_pred cCCcccccccccccCcCCHHHHhhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcE
Q 007916 277 NCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEE 356 (585)
Q Consensus 277 ~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~ 356 (585)
. . .+..+..+++|++|++++|.+... .+..+..+++|+.|++.++.........+..+++|+.
T Consensus 167 ------~------~----~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 229 (285)
T 1ozn_A 167 ------S------V----PERAFRGLHSLDRLLLHQNRVAHV-HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 229 (285)
T ss_dssp ------E------E----CTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred ------c------c----CHHHhcCccccCEEECCCCccccc-CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCE
Confidence 0 0 001123456666666666654332 1222344556666666554222222233445566666
Q ss_pred EEecCC
Q 007916 357 LRVFPA 362 (585)
Q Consensus 357 L~l~~~ 362 (585)
|+++++
T Consensus 230 L~l~~N 235 (285)
T 1ozn_A 230 LRLNDN 235 (285)
T ss_dssp EECCSS
T ss_pred EeccCC
Confidence 666654
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.28 E-value=7.8e-14 Score=133.56 Aligned_cols=154 Identities=11% Similarity=0.116 Sum_probs=92.0
Q ss_pred CccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHH--HhcCCCCcEEEccc-CCCh--
Q 007916 385 CRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAV--VKTCSKLQRLSVSG-LLTD-- 459 (585)
Q Consensus 385 ~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~--~~~~~~L~~L~l~~-~~~~-- 459 (585)
+++|++|.++.+.++......+ ..+++|++|++++|. +.+ ..++... ...+++|++|++++ .++.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~------l~~---~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 213 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQV-RAFPALTSLDLSDNP------GLG---ERGLMAALCPHKFPAIQNLALRNTGMETPT 213 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSC-CCCTTCCEEECCSCT------TCH---HHHHHTTSCTTSSCCCCSCBCCSSCCCCHH
T ss_pred ccCCCEEEeeCCCcchhhHHHh-ccCCCCCEEECCCCC------Ccc---chhhhHHHhhhcCCCCCEEECCCCCCCchH
Confidence 4555555544444432221112 256778888887653 220 1122111 24567888888877 5542
Q ss_pred hHHHHHhhcCccccceecccccCChHHHHHHHhcC---CCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccCHHH
Q 007916 460 LTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGC---PKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMNA 536 (585)
Q Consensus 460 ~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~---~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it~~~ 536 (585)
.....+...+++|++|++++|.+++.... .+..+ ++|++|++++|.++. ++..+ .++|++|+|++|+++.-.
T Consensus 214 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~--~~~L~~L~Ls~N~l~~~~ 288 (310)
T 4glp_A 214 GVCAALAAAGVQPHSLDLSHNSLRATVNP-SAPRCMWSSALNSLNLSFAGLEQ--VPKGL--PAKLRVLDLSSNRLNRAP 288 (310)
T ss_dssp HHHHHHHHHTCCCSSEECTTSCCCCCCCS-CCSSCCCCTTCCCEECCSSCCCS--CCSCC--CSCCSCEECCSCCCCSCC
T ss_pred HHHHHHHhcCCCCCEEECCCCCCCccchh-hHHhccCcCcCCEEECCCCCCCc--hhhhh--cCCCCEEECCCCcCCCCc
Confidence 22223334789999999999998653211 12334 799999999999863 22222 389999999999987421
Q ss_pred HHHHHhhCCCCcEEEeccCC
Q 007916 537 CRRLAKQMPRLNVEVMKEDG 556 (585)
Q Consensus 537 ~~~~~~~~p~l~~~~~~~~~ 556 (585)
. ...+|++..-.+.++.
T Consensus 289 ~---~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 289 Q---PDELPEVDNLTLDGNP 305 (310)
T ss_dssp C---TTSCCCCSCEECSSTT
T ss_pred h---hhhCCCccEEECcCCC
Confidence 1 2456777666665554
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.26 E-value=8.4e-14 Score=131.05 Aligned_cols=205 Identities=11% Similarity=0.092 Sum_probs=133.1
Q ss_pred CCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHHHHH
Q 007916 303 ANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAVS 382 (585)
Q Consensus 303 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 382 (585)
++|++|+++++.++... ...+..+++|+.|+++++.........+..+++|+.|+++++. ++......+
T Consensus 28 ~~l~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~---------l~~~~~~~~- 96 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP---------IQSLALGAF- 96 (276)
T ss_dssp TTCCEEECTTCCCCEEC-TTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC---------CCEECTTTT-
T ss_pred CCccEEECCCCcccccC-HhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc---------cCccChhhh-
Confidence 57899999988765432 1234678899999998763322222234677899999999875 332221122
Q ss_pred hcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChh-
Q 007916 383 FGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDL- 460 (585)
Q Consensus 383 ~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~- 460 (585)
..+++|++|.+..+.++......+ ..+++|++|+++++. +++.. +...+..+++|+.|++++ .+++.
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~------l~~~~----l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLENFPI-GHLKTLKELNVAHNL------IQSFK----LPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCC-TTCTTCCEEECCSSC------CCCCC----CCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred cCCccccEEECCCCCccccCchhc-ccCCCCCEEECcCCc------cceec----CchhhccCCCCCEEECCCCCCCcCC
Confidence 247888888877777754322222 378999999999764 33211 222356789999999987 55443
Q ss_pred --HHHHHhhcCcccc-ceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccC
Q 007916 461 --TFEYIGKYAKNLE-TLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVT 533 (585)
Q Consensus 461 --~~~~l~~~~~~L~-~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it 533 (585)
.+..+. .++.|. .|++++|.++... .......+|+.|++++|.++... ...+..+++|++|++++|+++
T Consensus 166 ~~~~~~l~-~L~~l~l~L~ls~n~l~~~~--~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 166 CTDLRVLH-QMPLLNLSLDLSLNPMNFIQ--PGAFKEIRLKELALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp GGGGHHHH-TCTTCCEEEECCSSCCCEEC--TTSSCSCCEEEEECCSSCCSCCC-TTTTTTCCSCCEEECCSSCBC
T ss_pred HHHhhhhh-hccccceeeecCCCcccccC--ccccCCCcccEEECCCCceeecC-HhHhcccccccEEEccCCccc
Confidence 333222 333333 7889999876532 22233458999999999985431 244578999999999999865
No 86
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.23 E-value=8.5e-11 Score=113.49 Aligned_cols=168 Identities=18% Similarity=0.257 Sum_probs=105.5
Q ss_pred hHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHHHHHhcCccchhhhccCCCCCHHHHHHHHH-hCCCCceEEeecc
Q 007916 343 GLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAVSFGCRRLHYVLYFCRQMTNAAVATIVQ-NCPNFTHFRLCIM 421 (585)
Q Consensus 343 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~l~~~~l~~l~~-~~~~L~~L~l~~~ 421 (585)
++..++..+|+|++|.+.++.. .. +.. + ..++|++|.+.++.+++..+..++. .+|+|++|+|+.+
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~-----l~-l~~-----~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~ 229 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNN-----LS-IGK-----K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVG 229 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBT-----CB-CCS-----C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECB
T ss_pred CHHHHHhcCCCCcEEEEeCCCC-----ce-ecc-----c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecc
Confidence 3556666777788888776410 00 110 0 2566666666666666666666653 4677777776521
Q ss_pred CCCCCCCCCCCcchhhHHHHHhcCCCCcEEEcccCCChhHHHHH-hhcCccccceecccccCChHHHHHHHh--cCCCcc
Q 007916 422 TPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLLTDLTFEYI-GKYAKNLETLSVAFAGRSDRGMQCVLE--GCPKLR 498 (585)
Q Consensus 422 ~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~~L~~L~l~~~~i~~~~l~~l~~--~~~~L~ 498 (585)
.. +... +.++..+ . ..+ +..+|+|+.|.+.+|.+++.+...++. .+|+|+
T Consensus 230 ~~---~~~~----~~~~~~l-------~-------------~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~ 282 (362)
T 2ra8_A 230 VE---DYGF----DGDMNVF-------R-------------PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE 282 (362)
T ss_dssp CG---GGTC----CSCGGGT-------G-------------GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCS
T ss_pred cc---cccc----chhHHHH-------H-------------HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCC
Confidence 10 0000 0000000 0 000 125788888888888888776665554 478999
Q ss_pred EEEecCCCCChHHHHHHH---hcCcCCcEEEccccccCHHHHHHHHhhCCCCcEEE
Q 007916 499 KLEIRDCPFGNEALLSGL---EKYESMRSLWMSACNVTMNACRRLAKQMPRLNVEV 551 (585)
Q Consensus 499 ~L~l~~~~~~~~~l~~~~---~~l~~L~~L~l~~~~it~~~~~~~~~~~p~l~~~~ 551 (585)
+|+++.|.+++.+...+. .++++|+.|+|++|.|++.+++.+.+.+ .+.++.
T Consensus 283 ~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~ 337 (362)
T 2ra8_A 283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDV 337 (362)
T ss_dssp EEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEEC
T ss_pred EEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEe
Confidence 999999999887765554 5679999999999999999999999877 434444
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.22 E-value=4.6e-11 Score=113.91 Aligned_cols=101 Identities=18% Similarity=0.167 Sum_probs=47.9
Q ss_pred CCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCC
Q 007916 118 YPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESF 197 (585)
Q Consensus 118 ~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 197 (585)
+++|++|+++++.+++. ..+. .+++|++|++++|. ++.. +. +..+++|++|++++|.+++.+ ....+
T Consensus 40 l~~L~~L~l~~~~i~~l--~~~~-~l~~L~~L~L~~n~-i~~~--~~-~~~l~~L~~L~L~~n~l~~~~------~~~~l 106 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI--EGVQ-YLNNLIGLELKDNQ-ITDL--AP-LKNLTKITELELSGNPLKNVS------AIAGL 106 (308)
T ss_dssp HHTCCEEECTTSCCCCC--TTGG-GCTTCCEEECCSSC-CCCC--GG-GTTCCSCCEEECCSCCCSCCG------GGTTC
T ss_pred cCCcCEEEeeCCCccCc--hhhh-ccCCCCEEEccCCc-CCCC--hh-HccCCCCCEEEccCCcCCCch------hhcCC
Confidence 34555666655544431 1222 25556666665543 2211 11 345566666666666554421 11345
Q ss_pred CCcCEEEeccCCCCCChHHHHHHHhcCCCCcEEEecCCc
Q 007916 198 TSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSI 236 (585)
Q Consensus 198 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 236 (585)
++|++|+++++...--.. +..+++|++|++++|.
T Consensus 107 ~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~ 140 (308)
T 1h6u_A 107 QSIKTLDLTSTQITDVTP-----LAGLSNLQVLYLDLNQ 140 (308)
T ss_dssp TTCCEEECTTSCCCCCGG-----GTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCCCCCchh-----hcCCCCCCEEECCCCc
Confidence 556666665554221111 4455566666665553
No 88
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.17 E-value=1.1e-11 Score=109.76 Aligned_cols=108 Identities=17% Similarity=0.242 Sum_probs=79.2
Q ss_pred hCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceeccccc-CChHH
Q 007916 409 NCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAG-RSDRG 486 (585)
Q Consensus 409 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~ 486 (585)
.+++|++|++++|.. + ... ...+..+++|++|++++ .+++..+..++ .+++|+.|++++|. +++.
T Consensus 86 ~l~~L~~L~l~~n~l------~----~~~-~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~- 152 (197)
T 4ezg_A 86 GLSNLERLRIMGKDV------T----SDK-IPNLSGLTSLTLLDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITDI- 152 (197)
T ss_dssp TCTTCCEEEEECTTC------B----GGG-SCCCTTCTTCCEEECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCCCC-
T ss_pred cCCCCCEEEeECCcc------C----ccc-ChhhcCCCCCCEEEecCCccCcHhHHHHh-hCCCCCEEEccCCCCcccc-
Confidence 678888888887643 2 001 11134678899999988 77777777776 78999999999997 7763
Q ss_pred HHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccCH
Q 007916 487 MQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTM 534 (585)
Q Consensus 487 l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it~ 534 (585)
. .+..+++|+.|++++|.+++.. .+..+++|++|++++|+|.+
T Consensus 153 -~-~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 153 -M-PLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -G-GGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC----
T ss_pred -H-hhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCcccCC
Confidence 2 3578999999999999986632 56788999999999998754
No 89
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.17 E-value=8.4e-12 Score=116.84 Aligned_cols=177 Identities=16% Similarity=0.193 Sum_probs=99.4
Q ss_pred hCCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccC
Q 007916 117 KYPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPES 196 (585)
Q Consensus 117 ~~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 196 (585)
.+++|+.|++.++.+++. ..+. .+++|++|++++|. ++. ++ .+..+++|++|++++|.++...... ...
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~~l~-~l~~L~~L~l~~n~-l~~--~~-~l~~l~~L~~L~L~~n~l~~~~~~~----~~~ 107 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--QGIQ-YLPNVRYLALGGNK-LHD--IS-ALKELTNLTYLILTGNQLQSLPNGV----FDK 107 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGG-GCTTCCEEECTTSC-CCC--CG-GGTTCTTCCEEECTTSCCCCCCTTT----TTT
T ss_pred cccceeeeeeCCCCcccc--cccc-cCCCCcEEECCCCC-CCC--ch-hhcCCCCCCEEECCCCccCccChhH----hcC
Confidence 346777777777755542 2233 36777777777765 322 12 2346777888888777766543221 245
Q ss_pred CCCcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhCCccccccCcccccccCCCchhhHHHHh
Q 007916 197 FTSLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAF 275 (585)
Q Consensus 197 ~~~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~ 275 (585)
+++|++|+++++... ++.. .+..+++|++|++++|... .+
T Consensus 108 l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~-~~---------------------------------- 148 (272)
T 3rfs_A 108 LTNLKELVLVENQLQSLPDG----VFDKLTNLTYLNLAHNQLQ-SL---------------------------------- 148 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCC-CC----------------------------------
T ss_pred CcCCCEEECCCCcCCccCHH----HhccCCCCCEEECCCCccC-cc----------------------------------
Confidence 667777777766422 2211 1445667777777665311 10
Q ss_pred hcCCcccccccccccCcCCHHHHhhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCc
Q 007916 276 NNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLE 355 (585)
Q Consensus 276 ~~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~ 355 (585)
.+..+..+++|++|++++|.++.. ....+..+++|+.|++.++.........+..+++|+
T Consensus 149 -------------------~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 149 -------------------PKGVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp -------------------CTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred -------------------CHHHhccCccCCEEECCCCCcCcc-CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence 011234466777777777765432 122345567777777776532222223345677888
Q ss_pred EEEecCCC
Q 007916 356 ELRVFPAD 363 (585)
Q Consensus 356 ~L~l~~~~ 363 (585)
.|++.+|.
T Consensus 209 ~L~l~~N~ 216 (272)
T 3rfs_A 209 YIWLHDNP 216 (272)
T ss_dssp EEECCSSC
T ss_pred EEEccCCC
Confidence 88888753
No 90
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.14 E-value=7.1e-11 Score=114.04 Aligned_cols=141 Identities=21% Similarity=0.173 Sum_probs=96.8
Q ss_pred HHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhh-cCccccceecccc--
Q 007916 405 TIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGK-YAKNLETLSVAFA-- 480 (585)
Q Consensus 405 ~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~-~~~~L~~L~l~~~-- 480 (585)
.+...+|+|++|.+.++.. ..+. . . ..++|++|++.. .+++..+..++. .+|+|+.|+|+.+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~---l~l~-----~-----~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~ 231 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNN---LSIG-----K-----K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVE 231 (362)
T ss_dssp HHHHTCTTCCEEEEECCBT---CBCC-----S-----C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCG
T ss_pred HHHhcCCCCcEEEEeCCCC---ceec-----c-----c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccc
Confidence 3445788999999986521 1111 0 1 268899999976 788888888874 6899999998632
Q ss_pred c-CCh---HHHHHHH--hcCCCccEEEecCCCCChHHHHHHHh--cCcCCcEEEccccccCHHHHHHHHhh---CCCCcE
Q 007916 481 G-RSD---RGMQCVL--EGCPKLRKLEIRDCPFGNEALLSGLE--KYESMRSLWMSACNVTMNACRRLAKQ---MPRLNV 549 (585)
Q Consensus 481 ~-i~~---~~l~~l~--~~~~~L~~L~l~~~~~~~~~l~~~~~--~l~~L~~L~l~~~~it~~~~~~~~~~---~p~l~~ 549 (585)
. ..+ .++..++ ..+|+|+.|++.+|.+++.....+.. .+|+|++|+|+.|.+++.|...+... +|++..
T Consensus 232 ~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~ 311 (362)
T 2ra8_A 232 DYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311 (362)
T ss_dssp GGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSE
T ss_pred ccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceE
Confidence 1 122 1222233 25899999999999997765544443 57999999999999999998888744 566655
Q ss_pred EEeccCCCCC
Q 007916 550 EVMKEDGSDD 559 (585)
Q Consensus 550 ~~~~~~~~~~ 559 (585)
-.+......+
T Consensus 312 L~L~~n~i~d 321 (362)
T 2ra8_A 312 INMKYNYLSD 321 (362)
T ss_dssp EECCSBBCCH
T ss_pred EECCCCcCCH
Confidence 4444444433
No 91
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.14 E-value=3.3e-12 Score=119.65 Aligned_cols=59 Identities=12% Similarity=0.032 Sum_probs=36.5
Q ss_pred hcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCC
Q 007916 300 NSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPAD 363 (585)
Q Consensus 300 ~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 363 (585)
..+++|+.|+++++.+.... .+..+++|+.|++.++.... +. .+..+++|+.|++++|.
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~---~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~ 96 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ---GIQYLPNVRYLALGGNKLHD-IS-ALKELTNLTYLILTGNQ 96 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT---TGGGCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECTTSC
T ss_pred ccccceeeeeeCCCCccccc---ccccCCCCcEEECCCCCCCC-ch-hhcCCCCCCEEECCCCc
Confidence 34678888888887754421 14567788888887652211 11 34566777777777754
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.13 E-value=2.5e-11 Score=114.68 Aligned_cols=172 Identities=15% Similarity=0.144 Sum_probs=108.1
Q ss_pred hcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHH
Q 007916 300 NSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFV 379 (585)
Q Consensus 300 ~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 379 (585)
..+++|++|+++++.+... + .+..+++|+.|+++++.... +.. +..+++|+.|+++++. ++..
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~---------l~~~--- 105 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--Q-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENK---------VKDL--- 105 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC---------CCCG---
T ss_pred hhcCcccEEEccCCCcccC--h-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCc---------CCCC---
Confidence 3467888898888875543 1 14567777777777652211 111 4566677777777653 2221
Q ss_pred HHHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCC
Q 007916 380 AVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLT 458 (585)
Q Consensus 380 ~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~ 458 (585)
.. ...+++|++|++++|. +++. ..+..+++|+.|++++ .++
T Consensus 106 ------------------------~~-l~~l~~L~~L~L~~n~------i~~~-------~~l~~l~~L~~L~l~~n~l~ 147 (291)
T 1h6t_A 106 ------------------------SS-LKDLKKLKSLSLEHNG------ISDI-------NGLVHLPQLESLYLGNNKIT 147 (291)
T ss_dssp ------------------------GG-GTTCTTCCEEECTTSC------CCCC-------GGGGGCTTCCEEECCSSCCC
T ss_pred ------------------------hh-hccCCCCCEEECCCCc------CCCC-------hhhcCCCCCCEEEccCCcCC
Confidence 11 1256677777776553 3311 1134567777777766 444
Q ss_pred hhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccCHH
Q 007916 459 DLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMN 535 (585)
Q Consensus 459 ~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it~~ 535 (585)
+- ..+. .+++|+.|++++|.+++.. . +..+++|+.|++++|.+++. ..+..+++|+.|++++|+++..
T Consensus 148 ~~--~~l~-~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~L~L~~N~i~~l---~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 148 DI--TVLS-RLTKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CC--GGGG-GCTTCSEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCBC---GGGTTCTTCSEEEEEEEEEECC
T ss_pred cc--hhhc-cCCCCCEEEccCCccccch--h-hcCCCccCEEECCCCcCCCC---hhhccCCCCCEEECcCCcccCC
Confidence 32 2223 6788888888888876632 2 57788999999999888653 2267788999999998887654
No 93
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.12 E-value=1.1e-09 Score=95.40 Aligned_cols=126 Identities=20% Similarity=0.231 Sum_probs=96.2
Q ss_pred HHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHH---HhcCCCCcEEEccc-CCChhHHHHHhh---cCccccc
Q 007916 402 AVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAV---VKTCSKLQRLSVSG-LLTDLTFEYIGK---YAKNLET 474 (585)
Q Consensus 402 ~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~---~~~~~~L~~L~l~~-~~~~~~~~~l~~---~~~~L~~ 474 (585)
.+..+...+++|++|++++|. .+. ++++..+ +...+.|++|++++ .+++.+...++. ..++|++
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~-----~i~----~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~ 97 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIM-----NIP----VPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKS 97 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCT-----TCC----HHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCE
T ss_pred HHHHHHhcCCCCCEEEecCCC-----CCC----HHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCE
Confidence 444455577888888887541 355 5555444 34567899999988 888888887764 4578999
Q ss_pred eecccccCChHHHHHHHh---cCCCccEEEe--cCCCCChHHH---HHHHhcCcCCcEEEccccccCHHH
Q 007916 475 LSVAFAGRSDRGMQCVLE---GCPKLRKLEI--RDCPFGNEAL---LSGLEKYESMRSLWMSACNVTMNA 536 (585)
Q Consensus 475 L~l~~~~i~~~~l~~l~~---~~~~L~~L~l--~~~~~~~~~l---~~~~~~l~~L~~L~l~~~~it~~~ 536 (585)
|+|++|.|+++|+..+.. .+++|++|++ ++|.+++.+. ...+...++|++|+|++|.+++.|
T Consensus 98 L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 98 LNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp EECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred EECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 999999999999877754 4678999999 8899988774 444566789999999999998876
No 94
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.11 E-value=7.3e-12 Score=117.69 Aligned_cols=130 Identities=19% Similarity=0.194 Sum_probs=68.4
Q ss_pred CCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCC
Q 007916 119 PFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFT 198 (585)
Q Consensus 119 ~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~ 198 (585)
+++++|+++++.++......+. .+++|++|++++|. ++.. ....+..+++|++|++++|.++..... ....++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~-~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~ 100 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCE-IQTI-EDGAYQSLSHLSTLILTGNPIQSLALG----AFSGLS 100 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTT-TCTTCSEEECTTCC-CCEE-CTTTTTTCTTCCEEECTTCCCCEECTT----TTTTCT
T ss_pred CCccEEECCCCcccccCHhHhc-cccCCcEEECCCCc-CCcc-CHHHccCCcCCCEEECCCCccCccChh----hhcCCc
Confidence 4577777777655543222222 25667777777653 3211 112234567777777777766554322 124566
Q ss_pred CcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcchh-HHHHHHHhCCccccccCccc
Q 007916 199 SLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSISLE-QLQRLLVRAPQLEELGTGSF 259 (585)
Q Consensus 199 ~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~ 259 (585)
+|++|+++++... +.... +..+++|++|++++|.... .++..+..+++|++|++.++
T Consensus 101 ~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 101 SLQKLVAVETNLASLENFP----IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp TCCEEECTTSCCCCSTTCC----CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred cccEEECCCCCccccCchh----cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence 7777777665422 11111 4456677777777664322 13444555555666655543
No 95
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.09 E-value=1.1e-11 Score=116.89 Aligned_cols=199 Identities=16% Similarity=0.072 Sum_probs=116.2
Q ss_pred CCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHHHH
Q 007916 302 CANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAV 381 (585)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 381 (585)
++++++++++++.++.. +. .-.++++.|+++++.........+..+++|+.|+++++. ++.....
T Consensus 9 l~~l~~l~~~~~~l~~i--p~--~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~---------l~~~~~~-- 73 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTAL--PP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE---------LTKLQVD-- 73 (290)
T ss_dssp STTCCEEECTTSCCSSC--CS--CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC---------CCEEECC--
T ss_pred cCCccEEECCCCCCCcC--CC--CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc---------cCcccCC--
Confidence 45556666655543321 00 012456666665542222222233455666666666654 2211110
Q ss_pred HhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChh
Q 007916 382 SFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDL 460 (585)
Q Consensus 382 ~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~ 460 (585)
..+++|+.|+++.+.++. +......+++|+.|+++++.. +..+ . ..+..+++|+.|++++ .++.-
T Consensus 74 -~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~l~~N~l------~~l~-~----~~~~~l~~L~~L~L~~N~l~~~ 139 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFNRL------TSLP-L----GALRGLGELQELYLKGNELKTL 139 (290)
T ss_dssp -SCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEECCSSCC------CCCC-S----STTTTCTTCCEEECTTSCCCCC
T ss_pred -CCCCcCCEEECCCCcCCc--CchhhccCCCCCEEECCCCcC------cccC-H----HHHcCCCCCCEEECCCCCCCcc
Confidence 246667777666666652 111223678899999986643 3211 0 1245678899999987 44432
Q ss_pred HHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccC
Q 007916 461 TFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVT 533 (585)
Q Consensus 461 ~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it 533 (585)
....+ ..+++|+.|++++|+++.... ..+..+++|+.|++++|.++. ++..+..+++|+.|+|++|++.
T Consensus 140 ~~~~~-~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 140 PPGLL-TPTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTTT-TTCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSCCCC--CCTTTTTTCCCSEEECCSCCBC
T ss_pred Chhhc-ccccCCCEEECCCCcCCccCH-HHhcCcCCCCEEECCCCcCCc--cChhhcccccCCeEEeCCCCcc
Confidence 22222 267899999999998764211 234678999999999999853 3445566789999999999853
No 96
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.08 E-value=6.8e-12 Score=117.40 Aligned_cols=180 Identities=17% Similarity=0.152 Sum_probs=104.2
Q ss_pred CCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHHHHH
Q 007916 303 ANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAVS 382 (585)
Q Consensus 303 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 382 (585)
+++++|+++++.+.... ...+..+++|+.|++.++.........+..+++|+.|+++++
T Consensus 37 ~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-------------------- 95 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-------------------- 95 (270)
T ss_dssp TTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS--------------------
T ss_pred CCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC--------------------
Confidence 46777887777654321 112345666666666654211111112234555666666554
Q ss_pred hcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhH
Q 007916 383 FGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLT 461 (585)
Q Consensus 383 ~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~ 461 (585)
.++.... .....+++|++|+++++.. +..+ ...+..+++|++|++++ .++...
T Consensus 96 --------------~l~~~~~-~~~~~l~~L~~L~l~~n~l------~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 96 --------------KLQALPI-GVFDQLVNLAELRLDRNQL------KSLP-----PRVFDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp --------------CCCCCCT-TTTTTCSSCCEEECCSSCC------CCCC-----TTTTTTCTTCCEEECCSSCCCCCC
T ss_pred --------------cCCcCCH-hHcccccCCCEEECCCCcc------CeeC-----HHHhCcCcCCCEEECCCCcCCccC
Confidence 3321111 1112567788888775532 2111 11234677888888876 444322
Q ss_pred HHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEcccccc
Q 007916 462 FEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNV 532 (585)
Q Consensus 462 ~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i 532 (585)
...+. .+++|+.|++++|.++..... .+..+++|++|++++|.++... ...+..+++|+.|+|++|++
T Consensus 150 ~~~~~-~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 150 KGVFD-KLTSLKELRLYNNQLKRVPEG-AFDKLTELKTLKLDNNQLKRVP-EGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTT-TCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCB
T ss_pred HhHcc-CCcccceeEecCCcCcEeChh-HhccCCCcCEEECCCCcCCcCC-HHHhccccCCCEEEecCCCe
Confidence 22222 678899999998887553221 2466899999999999885321 13456789999999999985
No 97
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.08 E-value=2.8e-10 Score=95.94 Aligned_cols=102 Identities=12% Similarity=0.183 Sum_probs=83.8
Q ss_pred CCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc--CCChhHHHHHhhc---Cccccceeccccc-CCh
Q 007916 411 PNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG--LLTDLTFEYIGKY---AKNLETLSVAFAG-RSD 484 (585)
Q Consensus 411 ~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~--~~~~~~~~~l~~~---~~~L~~L~l~~~~-i~~ 484 (585)
.+|++|++++|. ++ ++++..+ ..|++|++|++++ .++|.++..++.. +++|+.|+|++|. |||
T Consensus 61 ~~L~~LDLs~~~------It----d~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSC------IM----SIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCC------CC----GGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCC------cc----HHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 368999999753 77 7777766 6899999999988 6999999999953 6799999999995 999
Q ss_pred HHHHHHHhcCCCccEEEecCCCC-ChHH--HHHHHhcCcCCcE
Q 007916 485 RGMQCVLEGCPKLRKLEIRDCPF-GNEA--LLSGLEKYESMRS 524 (585)
Q Consensus 485 ~~l~~l~~~~~~L~~L~l~~~~~-~~~~--l~~~~~~l~~L~~ 524 (585)
.|+..+ ..|++|++|++++|+. +|.+ ...+-+.+|+++.
T Consensus 130 ~Gl~~L-~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 130 KGIIAL-HHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp HHHHHG-GGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred HHHHHH-hcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 999987 5799999999999985 8765 3344477888753
No 98
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.04 E-value=1.1e-10 Score=109.01 Aligned_cols=197 Identities=14% Similarity=0.102 Sum_probs=99.9
Q ss_pred CCcEEEecccccChHHHHHHHhh-CCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCC
Q 007916 120 FLEELRLKRMAVSDESLEFLASN-FPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFT 198 (585)
Q Consensus 120 ~L~~L~l~~~~l~~~~l~~i~~~-~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~ 198 (585)
+.+.+++++..++. +... .+++++|+++++. ++.. ....+..+++|++|++++|.++..+.. ....++
T Consensus 17 ~~~~l~~~~~~l~~-----ip~~~~~~l~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l~~i~~~----~~~~l~ 85 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-----IPSNIPADTKKLDLQSNK-LSSL-PSKAFHRLTKLRLLYLNDNKLQTLPAG----IFKELK 85 (270)
T ss_dssp TTTEEECTTSCCSS-----CCSCCCTTCSEEECCSSC-CSCC-CTTSSSSCTTCCEEECCSSCCSCCCTT----TTSSCT
T ss_pred CCCEEEccCCCCCc-----cCCCCCCCCCEEECcCCC-CCee-CHHHhcCCCCCCEEECCCCccCeeChh----hhcCCC
Confidence 45667776665543 1111 2357777777654 3211 111234667777777777766543221 224567
Q ss_pred CcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhCCccccccCcccccccCCCchhhHHHHhhc
Q 007916 199 SLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSFLQDLTARPYADLESAFNN 277 (585)
Q Consensus 199 ~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~ 277 (585)
+|++|+++++... ++.. .+..+++|++|++++|....-.+..+..+++|++|++..+...
T Consensus 86 ~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--------------- 146 (270)
T 2o6q_A 86 NLETLWVTDNKLQALPIG----VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ--------------- 146 (270)
T ss_dssp TCCEEECCSSCCCCCCTT----TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------------
T ss_pred CCCEEECCCCcCCcCCHh----HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC---------------
Confidence 7777777766432 2221 1455677777777766422222233445555555555443111
Q ss_pred CCcccccccccccCcCCHHHHhhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEE
Q 007916 278 CKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEEL 357 (585)
Q Consensus 278 ~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L 357 (585)
...+..+..+++|++|++++|.+.... ...+..+++|+.|++.++.........+..+++|+.|
T Consensus 147 ---------------~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 147 ---------------SLPKGVFDKLTSLKELRLYNNQLKRVP-EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210 (270)
T ss_dssp ---------------CCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred ---------------ccCHhHccCCcccceeEecCCcCcEeC-hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence 000112344667777777776644321 1123456677777776542221111223455667777
Q ss_pred EecCC
Q 007916 358 RVFPA 362 (585)
Q Consensus 358 ~l~~~ 362 (585)
++.++
T Consensus 211 ~l~~N 215 (270)
T 2o6q_A 211 QLQEN 215 (270)
T ss_dssp ECCSS
T ss_pred EecCC
Confidence 77764
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.01 E-value=9.3e-11 Score=121.71 Aligned_cols=171 Identities=15% Similarity=0.137 Sum_probs=103.9
Q ss_pred hcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHH
Q 007916 300 NSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFV 379 (585)
Q Consensus 300 ~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 379 (585)
..+++|+.|+++++.+.... -+..+++|+.|+++++..... .. +..+++|+.|+|++|. +...
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~---------l~~l--- 102 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDENK---------IKDL--- 102 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT---TGGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCSSC---------CCCC---
T ss_pred hcCCCCCEEECcCCCCCCCh---HHccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcCCC---------CCCC---
Confidence 44678889999888765431 256778888888876522211 11 5677778888877754 2221
Q ss_pred HHHhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCC
Q 007916 380 AVSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLT 458 (585)
Q Consensus 380 ~~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~ 458 (585)
..+ ..+++|+.|++++|. +++. . .+..+++|+.|++++ .++
T Consensus 103 ------------------------~~l-~~l~~L~~L~Ls~N~------l~~l---~----~l~~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 103 ------------------------SSL-KDLKKLKSLSLEHNG------ISDI---N----GLVHLPQLESLYLGNNKIT 144 (605)
T ss_dssp ------------------------TTS-TTCTTCCEEECTTSC------CCCC---G----GGGGCTTCSEEECCSSCCC
T ss_pred ------------------------hhh-ccCCCCCEEEecCCC------CCCC---c----cccCCCccCEEECCCCccC
Confidence 011 245666666666543 2211 0 134566777777766 343
Q ss_pred hhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccCH
Q 007916 459 DLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTM 534 (585)
Q Consensus 459 ~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it~ 534 (585)
+. ..+. .+++|+.|+|++|.+++.. . +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|+++.
T Consensus 145 ~l--~~l~-~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~i~~l---~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 145 DI--TVLS-RLTKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CC--GGGG-SCTTCSEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCBC---GGGTTCTTCSEEECCSEEEEC
T ss_pred Cc--hhhc-ccCCCCEEECcCCcCCCch--h-hccCCCCCEEECcCCCCCCC---hHHccCCCCCEEEccCCcCcC
Confidence 32 2222 6677777888777765532 2 56778888888888877553 235677888888888887654
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.97 E-value=1.9e-09 Score=101.64 Aligned_cols=101 Identities=16% Similarity=0.161 Sum_probs=49.6
Q ss_pred CCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCC
Q 007916 118 YPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESF 197 (585)
Q Consensus 118 ~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 197 (585)
+++|+.|+++++.+++. ..+ ..+++|++|++++|. ++.. .. +..+++|++|++++|.+++.+ . ...+
T Consensus 45 l~~L~~L~l~~~~i~~~--~~~-~~l~~L~~L~L~~n~-l~~~--~~-l~~l~~L~~L~l~~n~l~~~~-----~-l~~l 111 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--QGI-QYLPNVTKLFLNGNK-LTDI--KP-LANLKNLGWLFLDENKVKDLS-----S-LKDL 111 (291)
T ss_dssp HHTCCEEECTTSCCCCC--TTG-GGCTTCCEEECCSSC-CCCC--GG-GTTCTTCCEEECCSSCCCCGG-----G-GTTC
T ss_pred cCcccEEEccCCCcccC--hhH-hcCCCCCEEEccCCc-cCCC--cc-cccCCCCCEEECCCCcCCCCh-----h-hccC
Confidence 35566666666544432 122 225666666666544 2211 11 345666666666666555422 1 2345
Q ss_pred CCcCEEEeccCCCCCChHHHHHHHhcCCCCcEEEecCCc
Q 007916 198 TSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKSI 236 (585)
Q Consensus 198 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~ 236 (585)
++|++|+++++...--.. +..+++|+.|++++|.
T Consensus 112 ~~L~~L~L~~n~i~~~~~-----l~~l~~L~~L~l~~n~ 145 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDING-----LVHLPQLESLYLGNNK 145 (291)
T ss_dssp TTCCEEECTTSCCCCCGG-----GGGCTTCCEEECCSSC
T ss_pred CCCCEEECCCCcCCCChh-----hcCCCCCCEEEccCCc
Confidence 566666665554221111 4455566666665543
No 101
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.97 E-value=1.7e-10 Score=108.86 Aligned_cols=61 Identities=16% Similarity=0.004 Sum_probs=32.5
Q ss_pred hcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCC
Q 007916 300 NSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPA 362 (585)
Q Consensus 300 ~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~ 362 (585)
..+++|+.|++++|.++.. ...++..+++|+.|++.++... .++..+...++|+.|++.++
T Consensus 145 ~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 145 TPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp TTCTTCCEEECTTSCCSCC-CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred ccccCCCEEECCCCcCCcc-CHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCC
Confidence 4456777777777665432 1122345667777777654211 12222234456777777765
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.97 E-value=1.5e-09 Score=95.97 Aligned_cols=103 Identities=16% Similarity=0.248 Sum_probs=60.2
Q ss_pred CCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCCCcCEEEeccCCCCCChHHHHHHHh
Q 007916 143 FPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSEVNTDALERLVS 222 (585)
Q Consensus 143 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 222 (585)
+++|++|+++++. ++ .++ .+..+++|++|++++|.+++.. ....+++|++|+++++. +....... +.
T Consensus 43 l~~L~~L~l~~n~-i~--~l~-~l~~l~~L~~L~l~~n~~~~~~------~l~~l~~L~~L~l~~n~--l~~~~~~~-l~ 109 (197)
T 4ezg_A 43 MNSLTYITLANIN-VT--DLT-GIEYAHNIKDLTINNIHATNYN------PISGLSNLERLRIMGKD--VTSDKIPN-LS 109 (197)
T ss_dssp HHTCCEEEEESSC-CS--CCT-TGGGCTTCSEEEEESCCCSCCG------GGTTCTTCCEEEEECTT--CBGGGSCC-CT
T ss_pred cCCccEEeccCCC-cc--ChH-HHhcCCCCCEEEccCCCCCcch------hhhcCCCCCEEEeECCc--cCcccChh-hc
Confidence 5678888887754 33 222 2457788888888887655421 12457777777777764 22211111 45
Q ss_pred cCCCCcEEEecCCcchhHHHHHHHhCCccccccCcc
Q 007916 223 RCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGS 258 (585)
Q Consensus 223 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 258 (585)
.+++|+.|++++|......+..+..+++|++|++..
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~ 145 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCS
T ss_pred CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccC
Confidence 667777777777654443445555555555555554
No 103
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.94 E-value=4e-10 Score=94.74 Aligned_cols=84 Identities=17% Similarity=0.112 Sum_probs=36.1
Q ss_pred cCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHH--HHHHhcCc
Q 007916 444 TCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEAL--LSGLEKYE 520 (585)
Q Consensus 444 ~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l--~~~~~~l~ 520 (585)
.+++|++|++++ .+++.... ....+++|+.|++++|.+++......+..+++|++|++++|.+++... ...+..++
T Consensus 62 ~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~ 140 (149)
T 2je0_A 62 KLNKLKKLELSDNRVSGGLEV-LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP 140 (149)
T ss_dssp CCTTCCEEECCSSCCCSCTHH-HHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCT
T ss_pred cCCCCCEEECCCCcccchHHH-HhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCC
Confidence 344555555544 33322111 111345555555555555443222333445555555555555422111 12344555
Q ss_pred CCcEEEcc
Q 007916 521 SMRSLWMS 528 (585)
Q Consensus 521 ~L~~L~l~ 528 (585)
+|+.|+++
T Consensus 141 ~L~~L~l~ 148 (149)
T 2je0_A 141 QLTYLDGY 148 (149)
T ss_dssp TCCEETTB
T ss_pred CcccccCC
Confidence 55555543
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.91 E-value=2.7e-09 Score=110.74 Aligned_cols=100 Identities=18% Similarity=0.168 Sum_probs=46.4
Q ss_pred CCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCC
Q 007916 118 YPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESF 197 (585)
Q Consensus 118 ~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 197 (585)
+++|+.|+++++.+... ..+. .+++|+.|+|++|. ++.. +. +..+++|+.|+|++|.+.+.+ ....+
T Consensus 42 L~~L~~L~l~~n~i~~l--~~l~-~l~~L~~L~Ls~N~-l~~~--~~-l~~l~~L~~L~Ls~N~l~~l~------~l~~l 108 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSV--QGIQ-YLPNVTKLFLNGNK-LTDI--KP-LTNLKNLGWLFLDENKIKDLS------SLKDL 108 (605)
T ss_dssp HTTCCCCBCTTCCCCCC--TTGG-GCTTCCEEECTTSC-CCCC--GG-GGGCTTCCEEECCSSCCCCCT------TSTTC
T ss_pred CCCCCEEECcCCCCCCC--hHHc-cCCCCCEEEeeCCC-CCCC--hh-hccCCCCCEEECcCCCCCCCh------hhccC
Confidence 34555555555544331 1222 25556666665543 2111 11 345566666666665554421 11345
Q ss_pred CCcCEEEeccCCCCCChHHHHHHHhcCCCCcEEEecCC
Q 007916 198 TSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKS 235 (585)
Q Consensus 198 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 235 (585)
++|+.|+++++...-... +..+++|+.|+|++|
T Consensus 109 ~~L~~L~Ls~N~l~~l~~-----l~~l~~L~~L~Ls~N 141 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDING-----LVHLPQLESLYLGNN 141 (605)
T ss_dssp TTCCEEECTTSCCCCCGG-----GGGCTTCSEEECCSS
T ss_pred CCCCEEEecCCCCCCCcc-----ccCCCccCEEECCCC
Confidence 555555555554221111 444555555555554
No 105
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.91 E-value=1.3e-08 Score=88.56 Aligned_cols=110 Identities=11% Similarity=0.135 Sum_probs=92.8
Q ss_pred hhhHHHHHhcCCCCcEEEccc--CCChhHHHHHhh---cCccccceecccccCChHHHHHHH---hcCCCccEEEecCCC
Q 007916 435 DEAFGAVVKTCSKLQRLSVSG--LLTDLTFEYIGK---YAKNLETLSVAFAGRSDRGMQCVL---EGCPKLRKLEIRDCP 506 (585)
Q Consensus 435 ~~~l~~~~~~~~~L~~L~l~~--~~~~~~~~~l~~---~~~~L~~L~l~~~~i~~~~l~~l~---~~~~~L~~L~l~~~~ 506 (585)
.+.+......++.|++|++++ .+++.+...++. ..++|++|+|++|.++++|...+. ...++|++|++++|.
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 466777888899999999987 689998888874 468899999999999999877664 457899999999999
Q ss_pred CChHHHHHHH---hcCcCCcEEEc--cccccCHHHHHHHHhhC
Q 007916 507 FGNEALLSGL---EKYESMRSLWM--SACNVTMNACRRLAKQM 544 (585)
Q Consensus 507 ~~~~~l~~~~---~~l~~L~~L~l--~~~~it~~~~~~~~~~~ 544 (585)
+++.++..+. ...++|++|+| ++|.|+++|...+...+
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L 147 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANML 147 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHH
Confidence 9998876665 45579999999 88999999988877665
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.89 E-value=7.2e-10 Score=102.84 Aligned_cols=104 Identities=18% Similarity=0.182 Sum_probs=72.5
Q ss_pred hCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHH
Q 007916 409 NCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGM 487 (585)
Q Consensus 409 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l 487 (585)
.+++|++|++++|.. ++.+ . ... ++|+.|++++ .+++- ..+. .+++|+.|++++|.+++.
T Consensus 83 ~l~~L~~L~L~~N~l------~~l~------~-~~~-~~L~~L~L~~N~l~~~--~~l~-~l~~L~~L~Ls~N~i~~~-- 143 (263)
T 1xeu_A 83 DLTKLEELSVNRNRL------KNLN------G-IPS-ACLSRLFLDNNELRDT--DSLI-HLKNLEILSIRNNKLKSI-- 143 (263)
T ss_dssp TCSSCCEEECCSSCC------SCCT------T-CCC-SSCCEEECCSSCCSBS--GGGT-TCTTCCEEECTTSCCCBC--
T ss_pred cCCCCCEEECCCCcc------CCcC------c-ccc-CcccEEEccCCccCCC--hhhc-CcccccEEECCCCcCCCC--
Confidence 677788888776543 2111 0 111 6788888877 44442 2233 678899999999988764
Q ss_pred HHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccCHH
Q 007916 488 QCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMN 535 (585)
Q Consensus 488 ~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it~~ 535 (585)
. .+..+++|+.|++++|.+++. ..+..+++|+.|++++|+++..
T Consensus 144 ~-~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 144 V-MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp G-GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEECC
T ss_pred h-HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCcccCC
Confidence 2 357789999999999998654 4467889999999999987544
No 107
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.88 E-value=1.6e-10 Score=106.74 Aligned_cols=113 Identities=11% Similarity=0.153 Sum_probs=73.2
Q ss_pred hCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHH
Q 007916 409 NCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGM 487 (585)
Q Consensus 409 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l 487 (585)
.+++|++|+++++.. +..+ ...+..+++|++|++++ .++.-....+ ..+++|+.|++++|.++....
T Consensus 81 ~l~~L~~L~L~~n~l------~~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~ 148 (251)
T 3m19_A 81 DLTELGTLGLANNQL------ASLP-----LGVFDHLTQLDKLYLGGNQLKSLPSGVF-DRLTKLKELRLNTNQLQSIPA 148 (251)
T ss_dssp TCTTCCEEECTTSCC------CCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCT
T ss_pred cCCcCCEEECCCCcc------cccC-----hhHhcccCCCCEEEcCCCcCCCcChhHh-ccCCcccEEECcCCcCCccCH
Confidence 567777777775543 2111 11234567788888876 4442222112 267889999999998764221
Q ss_pred HHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccCHH
Q 007916 488 QCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMN 535 (585)
Q Consensus 488 ~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it~~ 535 (585)
..+..+++|+.|++++|.++... +..+..+++|+.|+|++|+++..
T Consensus 149 -~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 149 -GAFDKLTNLQTLSLSTNQLQSVP-HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp -TTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCCBCTT
T ss_pred -HHcCcCcCCCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCCceeCC
Confidence 13467899999999999985321 23457889999999999997543
No 108
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.88 E-value=3.2e-10 Score=97.50 Aligned_cols=110 Identities=15% Similarity=0.097 Sum_probs=62.8
Q ss_pred hCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHH
Q 007916 409 NCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGM 487 (585)
Q Consensus 409 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l 487 (585)
.+++|+.|++++|.. ++. ..+..+++|+.|++++ .+++. +..+...+++|+.|++++|.+++...
T Consensus 47 ~l~~L~~L~l~~n~l------~~~-------~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~ 112 (168)
T 2ell_A 47 EFVNLEFLSLINVGL------ISV-------SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNLSGNKLKDIST 112 (168)
T ss_dssp GGGGCCEEEEESSCC------CCC-------SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEECBSSSCCSSGG
T ss_pred hCCCCCEEeCcCCCC------CCh-------hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEeccCCccCcchh
Confidence 456666666665432 210 1233456677777765 44332 12222256777777777777655322
Q ss_pred HHHHhcCCCccEEEecCCCCChHH--HHHHHhcCcCCcEEEcccccc
Q 007916 488 QCVLEGCPKLRKLEIRDCPFGNEA--LLSGLEKYESMRSLWMSACNV 532 (585)
Q Consensus 488 ~~l~~~~~~L~~L~l~~~~~~~~~--l~~~~~~l~~L~~L~l~~~~i 532 (585)
...+..+++|+.|++++|+++... ....+..+++|+.|++++|.+
T Consensus 113 ~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 113 LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 133466777777887777763321 123566777788877777764
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.87 E-value=5.2e-12 Score=130.27 Aligned_cols=207 Identities=14% Similarity=0.080 Sum_probs=128.9
Q ss_pred hcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHH
Q 007916 300 NSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFV 379 (585)
Q Consensus 300 ~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 379 (585)
..+++|+.|+++++.+. .++..+..|++|+.|++.++.....+...... +++.+ .. .
T Consensus 346 ~~~~~L~~L~Ls~n~L~--~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~------~~~~~-----------~~----~ 402 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST--VLQSELESCKELQELEPENKWCLLTIILLMRA------LDPLL-----------YE----K 402 (567)
T ss_dssp STTTTSSSCCCCHHHHH--HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH------HCTGG-----------GH----H
T ss_pred ccCccceeccCChhhHH--hhHHHHHHHHHHHHhccccchhhhhHHHHHHh------ccccc-----------CC----H
Confidence 34678888888887763 46666777777887777554221111111110 11111 11 1
Q ss_pred HHHhcCccchhhh-ccCCCCCH--------HHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcE
Q 007916 380 AVSFGCRRLHYVL-YFCRQMTN--------AAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQR 450 (585)
Q Consensus 380 ~~~~~~~~L~~L~-~~~~~l~~--------~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~ 450 (585)
.....+++|+.|+ +.++.+.+ ..+..+ ....|+.|++++|. +++.+ . +..+++|+.
T Consensus 403 ~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l--~~~~L~~L~Ls~n~------l~~lp------~-~~~l~~L~~ 467 (567)
T 1dce_A 403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM--EYADVRVLHLAHKD------LTVLC------H-LEQLLLVTH 467 (567)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH--HHTTCSEEECTTSC------CSSCC------C-GGGGTTCCE
T ss_pred HHHHHHHhcccCcchhhcccchhhhhhhhccccccc--CccCceEEEecCCC------CCCCc------C-ccccccCcE
Confidence 1112245555553 33333221 122222 22469999999764 44221 2 457889999
Q ss_pred EEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccc
Q 007916 451 LSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSA 529 (585)
Q Consensus 451 L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~ 529 (585)
|++++ .++ .....++ .+++|+.|+|++|.++. +. .+..+++|+.|++++|.++....+..+..+++|+.|+|++
T Consensus 468 L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 468 LDLSHNRLR-ALPPALA-ALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp EECCSSCCC-CCCGGGG-GCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred eecCccccc-ccchhhh-cCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 99988 555 2223344 78999999999999876 44 4688999999999999995542246678999999999999
Q ss_pred cccCH--HHHHHHHhhCCCCcE
Q 007916 530 CNVTM--NACRRLAKQMPRLNV 549 (585)
Q Consensus 530 ~~it~--~~~~~~~~~~p~l~~ 549 (585)
|+++. ..+..+...+|++++
T Consensus 543 N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 543 NSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp SGGGGSSSCTTHHHHHCTTCSE
T ss_pred CcCCCCccHHHHHHHHCcccCc
Confidence 99754 234455666888765
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.84 E-value=9e-10 Score=92.51 Aligned_cols=127 Identities=20% Similarity=0.275 Sum_probs=91.4
Q ss_pred hCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHH
Q 007916 409 NCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGM 487 (585)
Q Consensus 409 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l 487 (585)
..++|+.|++++|.. + +..+...+..+++|+.|++++ .+++. ..++ .+++|+.|++++|.+++. +
T Consensus 15 ~~~~l~~L~l~~n~l------~----~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~-~l~~L~~L~Ls~n~i~~~-~ 80 (149)
T 2je0_A 15 TPSDVKELVLDNSRS------N----EGKLEGLTDEFEELEFLSTINVGLTSI--ANLP-KLNKLKKLELSDNRVSGG-L 80 (149)
T ss_dssp CGGGCSEEECTTCBC------B----TTBCCSCCTTCTTCCEEECTTSCCCCC--TTCC-CCTTCCEEECCSSCCCSC-T
T ss_pred CCccCeEEEccCCcC------C----hhHHHHHHhhcCCCcEEECcCCCCCCc--hhhh-cCCCCCEEECCCCcccch-H
Confidence 346789999987654 2 011222345678999999987 55543 2233 789999999999998764 4
Q ss_pred HHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccCHHHH--HHHHhhCCCCcE
Q 007916 488 QCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMNAC--RRLAKQMPRLNV 549 (585)
Q Consensus 488 ~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it~~~~--~~~~~~~p~l~~ 549 (585)
...+..+++|++|++++|.+++...+..+..+++|++|++++|+++.... ......+|+++.
T Consensus 81 ~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 144 (149)
T 2je0_A 81 EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY 144 (149)
T ss_dssp HHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred HHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence 55667799999999999999775455677899999999999999765322 234456777643
No 111
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.84 E-value=6.2e-11 Score=108.66 Aligned_cols=197 Identities=12% Similarity=0.043 Sum_probs=102.2
Q ss_pred CCCcEEEecccccCChhHHHHHhcCCCCcEEEecccC-ChhhHHHHHhcCCCCcEEEecC-CCCCchhhccccChhhHHH
Q 007916 303 ANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTV-EDKGLEAVGSNCPLLEELRVFP-ADPFDEEIIHGVTEEGFVA 380 (585)
Q Consensus 303 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~ 380 (585)
++|++|+++++.++... ...+..+++|+.|++.++. ...--...+..+++|++|++++ +. ++......
T Consensus 31 ~~l~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~---------l~~i~~~~ 100 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN---------LTYIDPDA 100 (239)
T ss_dssp TTCCEEEEESCCCSEEC-TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT---------CCEECTTS
T ss_pred CcccEEEEeCCcceEEC-HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC---------eeEcCHHH
Confidence 47889999888755421 1234567888888888763 2221122345677888888876 43 22111111
Q ss_pred HHhcCccchhhhccCCCCCHHHHHHHHHhCCCCc---eEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCc-EEEccc-
Q 007916 381 VSFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFT---HFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQ-RLSVSG- 455 (585)
Q Consensus 381 ~~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~---~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~-~L~l~~- 455 (585)
...+++|++|++..+.++. +.. ...+++|+ .|+++++. .++..+ ...+..+++|+ .|++++
T Consensus 101 -f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~-----~l~~i~-----~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 101 -LKELPLLKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNP-----YMTSIP-----VNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp -EECCTTCCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCT-----TCCEEC-----TTTTTTTBSSEEEEECCSC
T ss_pred -hCCCCCCCEEeCCCCCCcc--ccc-cccccccccccEEECCCCc-----chhhcC-----cccccchhcceeEEEcCCC
Confidence 1235667777665555543 111 22555665 77776541 122111 01133556677 777755
Q ss_pred CCChhHHHHHhhcCccccceeccccc-CChHHHHHHHhcC-CCccEEEecCCCCChHHHHHHHhcCcCCcEEEcccc
Q 007916 456 LLTDLTFEYIGKYAKNLETLSVAFAG-RSDRGMQCVLEGC-PKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSAC 530 (585)
Q Consensus 456 ~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~l~~l~~~~-~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~ 530 (585)
.++.-.... . ..++|+.|++++|+ ++.... ..+..+ ++|+.|++++|.++.. +. ..+++|+.|+++++
T Consensus 167 ~l~~i~~~~-~-~~~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~N~l~~l--~~--~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 167 GFTSVQGYA-F-NGTKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQTSVTAL--PS--KGLEHLKELIARNT 236 (239)
T ss_dssp CCCEECTTT-T-TTCEEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTTCCCCCC--CC--TTCTTCSEEECTTC
T ss_pred CCcccCHhh-c-CCCCCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCCCccccC--Ch--hHhccCceeeccCc
Confidence 333111111 1 12567777777663 543211 123445 6777777777666321 11 14566777766655
No 112
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.81 E-value=3e-09 Score=70.63 Aligned_cols=39 Identities=38% Similarity=0.503 Sum_probs=34.2
Q ss_pred hhhhcCCCHHHHHHHHhccCChhHHHHHHHHhHHHHHHHh
Q 007916 17 LAVTASFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAER 56 (585)
Q Consensus 17 ~~~i~~LP~eil~~If~~L~~~~d~~~~~~Vck~w~~~~~ 56 (585)
...+..||+|++.+||+||+ .+|+.++++|||+|+.++.
T Consensus 6 ~~~~~~LP~eil~~I~~~L~-~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSC-GGGHHHHHTTCHHHHHHHT
T ss_pred CCCHHHCCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhC
Confidence 35689999999999999995 8899999999999999876
No 113
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.80 E-value=1.8e-09 Score=99.53 Aligned_cols=107 Identities=18% Similarity=0.181 Sum_probs=60.2
Q ss_pred CCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCC
Q 007916 119 PFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFT 198 (585)
Q Consensus 119 ~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~ 198 (585)
++++.|+++++.++......+. .+++|++|+++++. ++. ..+..+..+++|++|++++|.++...... ...++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~ 107 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFR-GLTKLTWLNLDYNQ-LQT-LSAGVFDDLTELGTLGLANNQLASLPLGV----FDHLT 107 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSC-CCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTT----TTTCT
T ss_pred CCCCEEEccCCCcCccCHhHhc-CcccCCEEECCCCc-CCc-cCHhHhccCCcCCEEECCCCcccccChhH----hcccC
Confidence 4677777777765543222222 36677777777754 321 11222346677777777777766543222 24566
Q ss_pred CcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCc
Q 007916 199 SLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSI 236 (585)
Q Consensus 199 ~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~ 236 (585)
+|++|+++++... ++.. .+..+++|+.|++++|.
T Consensus 108 ~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~ 142 (251)
T 3m19_A 108 QLDKLYLGGNQLKSLPSG----VFDRLTKLKELRLNTNQ 142 (251)
T ss_dssp TCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSC
T ss_pred CCCEEEcCCCcCCCcChh----HhccCCcccEEECcCCc
Confidence 7777777766432 2221 13456677777776654
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.76 E-value=9.1e-10 Score=112.97 Aligned_cols=189 Identities=16% Similarity=0.077 Sum_probs=113.3
Q ss_pred CCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHHHHH
Q 007916 303 ANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAVS 382 (585)
Q Consensus 303 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 382 (585)
.+|+.|+++++.++. ++. .-.++|+.|+++++... .++ ..+++|+.|++++|. ++.... +
T Consensus 59 ~~L~~L~Ls~n~L~~--lp~--~l~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~---------l~~ip~--l- 118 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS--LPD--NLPPQITVLEITQNALI-SLP---ELPASLEYLDACDNR---------LSTLPE--L- 118 (571)
T ss_dssp TTCSEEECCSSCCSC--CCS--CCCTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSC---------CSCCCC--C-
T ss_pred CCccEEEeCCCCCCc--cCH--hHcCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCC---------CCCcch--h-
Confidence 477777777776543 211 01367777777765222 222 345778888887764 322110 1
Q ss_pred hcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhH
Q 007916 383 FGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLT 461 (585)
Q Consensus 383 ~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~ 461 (585)
..+|++|+++.|.++. +.. .+++|+.|++++|. ++..+ . .+++|+.|++++ .++.-.
T Consensus 119 --~~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~------l~~lp--~-------~l~~L~~L~Ls~N~L~~lp 176 (571)
T 3cvr_A 119 --PASLKHLDVDNNQLTM--LPE---LPALLEYINADNNQ------LTMLP--E-------LPTSLEVLSVRNNQLTFLP 176 (571)
T ss_dssp --CTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSC------CSCCC--C-------CCTTCCEEECCSSCCSCCC
T ss_pred --hcCCCEEECCCCcCCC--CCC---cCccccEEeCCCCc------cCcCC--C-------cCCCcCEEECCCCCCCCcc
Confidence 2277777777777764 111 56788888888654 33221 1 457888888877 444311
Q ss_pred HHHHhhcCccccceecccccCChHHHHHH----HhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccCHHHH
Q 007916 462 FEYIGKYAKNLETLSVAFAGRSDRGMQCV----LEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTMNAC 537 (585)
Q Consensus 462 ~~~l~~~~~~L~~L~l~~~~i~~~~l~~l----~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it~~~~ 537 (585)
. + .++|+.|++++|.++. +..+ ....+.|+.|++++|.++. ++..+..+++|+.|+|++|+++....
T Consensus 177 ~--l---~~~L~~L~Ls~N~L~~--lp~~~~~L~~~~~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 177 E--L---PESLEALDVSTNLLES--LPAVPVRNHHSEETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp C--C---CTTCCEEECCSSCCSS--CCCCC--------CCEEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred h--h---hCCCCEEECcCCCCCc--hhhHHHhhhcccccceEEecCCCccee--cCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 1 1 2788899998888763 2221 1112233999999998853 44545568999999999999877655
Q ss_pred HHHHh
Q 007916 538 RRLAK 542 (585)
Q Consensus 538 ~~~~~ 542 (585)
..+..
T Consensus 248 ~~l~~ 252 (571)
T 3cvr_A 248 ESLSQ 252 (571)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 115
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.75 E-value=7.7e-10 Score=101.29 Aligned_cols=197 Identities=13% Similarity=0.047 Sum_probs=112.8
Q ss_pred CCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEccc-CCCCccccccccccccCC
Q 007916 119 PFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQE-NGIEDSSGSWLSCFPESF 197 (585)
Q Consensus 119 ~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~-~~~~~~~~~~l~~~~~~~ 197 (585)
++++.|+++++.++......+. .+++|++|+++++..++... ...+..+++|++|++++ |.++..+... ...+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~-~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~----f~~l 104 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFS-NLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDA----LKEL 104 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTT-TCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTS----EECC
T ss_pred CcccEEEEeCCcceEECHHHcc-CCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHH----hCCC
Confidence 4688888888766553222222 37788888888764332111 12235678888888887 7766543222 2467
Q ss_pred CCcCEEEeccCCCC-CChHHHHHHHhcCCCCc---EEEecCCcchhHHH-HHHHhCCccc-cccCcccccccCCCchhhH
Q 007916 198 TSLEVLNFANLTSE-VNTDALERLVSRCKSLK---VLKVNKSISLEQLQ-RLLVRAPQLE-ELGTGSFLQDLTARPYADL 271 (585)
Q Consensus 198 ~~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~---~L~l~~~~~~~~~~-~~~~~~~~L~-~L~l~~~~~~~~~~~~~~l 271 (585)
++|++|+++++... ++. +..+++|+ .|++++|..+..++ ..+..+++|+ +|++.++....
T Consensus 105 ~~L~~L~l~~n~l~~lp~------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-------- 170 (239)
T 2xwt_C 105 PLLKFLGIFNTGLKMFPD------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-------- 170 (239)
T ss_dssp TTCCEEEEEEECCCSCCC------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE--------
T ss_pred CCCCEEeCCCCCCccccc------cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc--------
Confidence 78888888876432 221 44566666 88888873344432 3456677777 77776532110
Q ss_pred HHHhhcCCcccccccccccCcCCHHHHhhcCCCCcEEEecccc-cCChhHHHHHhcC-CCCcEEEecccCChhhHHHHHh
Q 007916 272 ESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTA-LQSGEFAKLVVHC-PRLRRLWVLDTVEDKGLEAVGS 349 (585)
Q Consensus 272 ~~~~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~l~~~~~~~-~~L~~L~l~~~~~~~~l~~~~~ 349 (585)
+.. ..+. .++|++|++++|. +... ....+..+ ++|+.|+++++... .++. .
T Consensus 171 ------------------i~~----~~~~-~~~L~~L~L~~n~~l~~i-~~~~~~~l~~~L~~L~l~~N~l~-~l~~--~ 223 (239)
T 2xwt_C 171 ------------------VQG----YAFN-GTKLDAVYLNKNKYLTVI-DKDAFGGVYSGPSLLDVSQTSVT-ALPS--K 223 (239)
T ss_dssp ------------------ECT----TTTT-TCEEEEEECTTCTTCCEE-CTTTTTTCSBCCSEEECTTCCCC-CCCC--T
T ss_pred ------------------cCH----hhcC-CCCCCEEEcCCCCCcccC-CHHHhhccccCCcEEECCCCccc-cCCh--h
Confidence 000 0112 2577888888773 5432 12234556 78888888765211 1111 1
Q ss_pred cCCCCcEEEecCC
Q 007916 350 NCPLLEELRVFPA 362 (585)
Q Consensus 350 ~~~~L~~L~l~~~ 362 (585)
.+++|+.|++.++
T Consensus 224 ~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 224 GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCSEEECTTC
T ss_pred HhccCceeeccCc
Confidence 4677888888764
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.74 E-value=3.7e-08 Score=91.24 Aligned_cols=99 Identities=17% Similarity=0.215 Sum_probs=46.4
Q ss_pred CCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCC
Q 007916 118 YPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESF 197 (585)
Q Consensus 118 ~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 197 (585)
+++|+.|+++++.+++. ..+. .+++|++|++++|. ++.. +. +..+++|++|++++|.+++.+ .+..
T Consensus 40 l~~L~~L~l~~n~i~~l--~~l~-~l~~L~~L~L~~N~-i~~~--~~-l~~l~~L~~L~L~~N~l~~l~-----~~~~-- 105 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSL--AGMQ-FFTNLKELHLSHNQ-ISDL--SP-LKDLTKLEELSVNRNRLKNLN-----GIPS-- 105 (263)
T ss_dssp HTTCSEEECTTSCCCCC--TTGG-GCTTCCEEECCSSC-CCCC--GG-GTTCSSCCEEECCSSCCSCCT-----TCCC--
T ss_pred cCcCcEEECcCCCcccc--hHHh-hCCCCCEEECCCCc-cCCC--hh-hccCCCCCEEECCCCccCCcC-----cccc--
Confidence 45566666666554432 1222 25566666666543 2211 11 345666666666666554422 1111
Q ss_pred CCcCEEEeccCCCCCChHHHHHHHhcCCCCcEEEecCC
Q 007916 198 TSLEVLNFANLTSEVNTDALERLVSRCKSLKVLKVNKS 235 (585)
Q Consensus 198 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 235 (585)
++|+.|+++++...-... +..+++|+.|++++|
T Consensus 106 ~~L~~L~L~~N~l~~~~~-----l~~l~~L~~L~Ls~N 138 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDTDS-----LIHLKNLEILSIRNN 138 (263)
T ss_dssp SSCCEEECCSSCCSBSGG-----GTTCTTCCEEECTTS
T ss_pred CcccEEEccCCccCCChh-----hcCcccccEEECCCC
Confidence 555555555543221111 344555555555544
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=4.4e-09 Score=101.30 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=18.2
Q ss_pred hcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEE
Q 007916 492 EGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLW 526 (585)
Q Consensus 492 ~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~ 526 (585)
.+|++|+.|++.++.++.-+- ..+.+|++|+.|.
T Consensus 294 ~~c~~L~~l~l~~n~i~~I~~-~aF~~~~~L~~ly 327 (329)
T 3sb4_A 294 MGCDNLRYVLATGDKITTLGD-ELFGNGVPSKLIY 327 (329)
T ss_dssp TTCTTEEEEEECSSCCCEECT-TTTCTTCCCCEEE
T ss_pred hCCccCCEEEeCCCccCccch-hhhcCCcchhhhc
Confidence 556666666666665522111 2345666666654
No 118
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.71 E-value=5.9e-09 Score=90.21 Aligned_cols=112 Identities=15% Similarity=0.084 Sum_probs=73.1
Q ss_pred hCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHH
Q 007916 409 NCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGM 487 (585)
Q Consensus 409 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l 487 (585)
..++|+.|++++|.. ++ + ..+..+++|++|++++ .++.-... +...+++|+.|++++|.+++..-
T Consensus 40 ~~~~L~~L~Ls~N~l------~~------~-~~l~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~i~~~~~ 105 (176)
T 1a9n_A 40 TLDQFDAIDFSDNEI------RK------L-DGFPLLRRLKTLLVNNNRICRIGEG-LDQALPDLTELILTNNSLVELGD 105 (176)
T ss_dssp GTTCCSEEECCSSCC------CE------E-CCCCCCSSCCEEECCSSCCCEECSC-HHHHCTTCCEEECCSCCCCCGGG
T ss_pred cCCCCCEEECCCCCC------Cc------c-cccccCCCCCEEECCCCcccccCcc-hhhcCCCCCEEECCCCcCCcchh
Confidence 445788888876543 21 0 1234567888888877 44432211 11267889999999888865322
Q ss_pred HHHHhcCCCccEEEecCCCCChH--HHHHHHhcCcCCcEEEccccccCH
Q 007916 488 QCVLEGCPKLRKLEIRDCPFGNE--ALLSGLEKYESMRSLWMSACNVTM 534 (585)
Q Consensus 488 ~~l~~~~~~L~~L~l~~~~~~~~--~l~~~~~~l~~L~~L~l~~~~it~ 534 (585)
...+..+++|+.|++++|+++.. .-...+..+++|+.|++++|.+.+
T Consensus 106 ~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 106 LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred hHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 12456789999999999987432 112356788999999999888655
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.64 E-value=5.1e-08 Score=83.54 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=43.4
Q ss_pred CCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCCCcCEEEeccCCCCCChHHHHHHHhc
Q 007916 144 PNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSEVNTDALERLVSR 223 (585)
Q Consensus 144 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~ 223 (585)
++|++|++++|. +++..++..+..+++|++|++++|.+++. .....+++|++|+++++...-. +...+..
T Consensus 24 ~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~ 93 (168)
T 2ell_A 24 AAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGG---LDMLAEK 93 (168)
T ss_dssp TSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCCCCSC---CCHHHHH
T ss_pred ccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCcCchH---HHHHHhh
Confidence 457777777654 33223333344566777777777665543 1223456666666665542210 1122444
Q ss_pred CCCCcEEEecCCc
Q 007916 224 CKSLKVLKVNKSI 236 (585)
Q Consensus 224 ~~~L~~L~l~~~~ 236 (585)
+++|+.|++++|.
T Consensus 94 l~~L~~L~Ls~N~ 106 (168)
T 2ell_A 94 LPNLTHLNLSGNK 106 (168)
T ss_dssp CTTCCEEECBSSS
T ss_pred CCCCCEEeccCCc
Confidence 5666666665553
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.60 E-value=4.9e-09 Score=94.99 Aligned_cols=110 Identities=14% Similarity=0.132 Sum_probs=73.7
Q ss_pred hCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHH
Q 007916 409 NCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGM 487 (585)
Q Consensus 409 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l 487 (585)
.+++|++|+++++.. +..+ ...+..+++|+.|++++ .++.-....+ ..+++|+.|++++|.++. +
T Consensus 62 ~l~~L~~L~L~~N~l------~~i~-----~~~~~~l~~L~~L~Ls~N~l~~l~~~~~-~~l~~L~~L~Ls~N~l~~--l 127 (229)
T 3e6j_A 62 SLINLKELYLGSNQL------GALP-----VGVFDSLTQLTVLDLGTNQLTVLPSAVF-DRLVHLKELFMCCNKLTE--L 127 (229)
T ss_dssp TCTTCCEEECCSSCC------CCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCS--C
T ss_pred CccCCcEEECCCCCC------CCcC-----hhhcccCCCcCEEECCCCcCCccChhHh-CcchhhCeEeccCCcccc--c
Confidence 567777777775542 2111 01234567788888876 4442222112 267889999999998764 4
Q ss_pred HHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccC
Q 007916 488 QCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVT 533 (585)
Q Consensus 488 ~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it 533 (585)
...+..+++|+.|++++|.++... ...+..+++|+.|++++|+++
T Consensus 128 p~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 128 PRGIERLTHLTHLALDQNQLKSIP-HGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CTTGGGCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECTTSCBC
T ss_pred CcccccCCCCCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCCCcc
Confidence 444578899999999999985321 144678899999999999965
No 121
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.58 E-value=4.1e-07 Score=78.26 Aligned_cols=125 Identities=11% Similarity=0.225 Sum_probs=88.1
Q ss_pred HHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHh---cCCCCcEEEccc-CCChhHHHHHhh---cCccc
Q 007916 400 NAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVK---TCSKLQRLSVSG-LLTDLTFEYIGK---YAKNL 472 (585)
Q Consensus 400 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~---~~~~L~~L~l~~-~~~~~~~~~l~~---~~~~L 472 (585)
+..+..+...-+.|++|+++++ +.+. +++...++. .-..|+.|+|++ .++|.+..+++. ..+.|
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~n-----n~ig----d~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL 100 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNM-----KRVS----KERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSL 100 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTC-----CSSC----HHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSC
T ss_pred HHHHHHHHhcCCCccEEECCCC-----CCCC----HHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCcc
Confidence 4455555556778888888742 2466 666555543 336788899887 888888877764 34678
Q ss_pred cceecccccCChHHHHHHHhcC---CCccEEEecCC---CCChHH---HHHHHhcCcCCcEEEccccccC
Q 007916 473 ETLSVAFAGRSDRGMQCVLEGC---PKLRKLEIRDC---PFGNEA---LLSGLEKYESMRSLWMSACNVT 533 (585)
Q Consensus 473 ~~L~l~~~~i~~~~l~~l~~~~---~~L~~L~l~~~---~~~~~~---l~~~~~~l~~L~~L~l~~~~it 533 (585)
+.|+|+.|.|+++|...+.+.+ +.|++|++++| .+++.+ +.+.+..-++|++|+++.|.+.
T Consensus 101 ~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 101 RVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp CEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred CeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 8899998888888888876653 56888888765 456654 4445566688888888877653
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.57 E-value=8.4e-09 Score=99.31 Aligned_cols=94 Identities=16% Similarity=0.199 Sum_probs=56.7
Q ss_pred hhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCcc-EEEecCCCCChHHHH
Q 007916 436 EAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLR-KLEIRDCPFGNEALL 513 (585)
Q Consensus 436 ~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~-~L~l~~~~~~~~~l~ 513 (585)
..+..+...|++|+.+++++ .++.-.-.++. .|++|+.|.+..+ ++..+- ..+.+|++|+ .|++.+ .++.-+ .
T Consensus 216 ~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~-~~~~L~~l~l~~n-i~~I~~-~aF~~~~~L~~~l~l~~-~l~~I~-~ 290 (329)
T 3sb4_A 216 ADFKLIRDYMPNLVSLDISKTNATTIPDFTFA-QKKYLLKIKLPHN-LKTIGQ-RVFSNCGRLAGTLELPA-SVTAIE-F 290 (329)
T ss_dssp HHHHHHHHHCTTCCEEECTTBCCCEECTTTTT-TCTTCCEEECCTT-CCEECT-TTTTTCTTCCEEEEECT-TCCEEC-T
T ss_pred HHHHHHHHhcCCCeEEECCCCCcceecHhhhh-CCCCCCEEECCcc-cceehH-HHhhCChhccEEEEEcc-cceEEc-h
Confidence 44444445567777777765 23322222222 6777888888765 322111 1247789999 999987 442211 1
Q ss_pred HHHhcCcCCcEEEccccccCH
Q 007916 514 SGLEKYESMRSLWMSACNVTM 534 (585)
Q Consensus 514 ~~~~~l~~L~~L~l~~~~it~ 534 (585)
..+.+|++|++|++++|.++.
T Consensus 291 ~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 291 GAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp TTTTTCTTEEEEEECSSCCCE
T ss_pred hhhhCCccCCEEEeCCCccCc
Confidence 446789999999998887654
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.54 E-value=2.1e-09 Score=104.88 Aligned_cols=88 Identities=15% Similarity=0.125 Sum_probs=49.1
Q ss_pred hcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHH--HHhcCCCccEEEecCCCCChHHHHHHHhcC
Q 007916 443 KTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQC--VLEGCPKLRKLEIRDCPFGNEALLSGLEKY 519 (585)
Q Consensus 443 ~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~--l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l 519 (585)
..+++|+.|++++ .++......+. .+++|+.|+|++|.++...... ....+++|+.|++++|.++.... ..+..+
T Consensus 109 ~~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l 186 (361)
T 2xot_A 109 SDLQALEVLLLYNNHIVVVDRNAFE-DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL-TDLQKL 186 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH-HHHHHS
T ss_pred CCCcCCCEEECCCCcccEECHHHhC-CcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH-HHhhhc
Confidence 4556677777765 44332222222 5677777777777764421110 01457788888888887743222 344556
Q ss_pred cC--CcEEEcccccc
Q 007916 520 ES--MRSLWMSACNV 532 (585)
Q Consensus 520 ~~--L~~L~l~~~~i 532 (585)
+. |+.|+|++|++
T Consensus 187 ~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 187 PAWVKNGLYLHNNPL 201 (361)
T ss_dssp CHHHHTTEECCSSCE
T ss_pred cHhhcceEEecCCCc
Confidence 55 47788888774
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.54 E-value=6.5e-09 Score=91.93 Aligned_cols=108 Identities=17% Similarity=0.218 Sum_probs=67.2
Q ss_pred hCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHH
Q 007916 409 NCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGM 487 (585)
Q Consensus 409 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l 487 (585)
.+++|++|+++++.. ++.+ .+..+++|+.|++++ .++. +......+++|+.|++++|.+++ +
T Consensus 46 ~l~~L~~L~ls~n~l------~~l~-------~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~--l 108 (198)
T 1ds9_A 46 TLKACKHLALSTNNI------EKIS-------SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIAS--L 108 (198)
T ss_dssp HTTTCSEEECSEEEE------SCCC-------CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCC--H
T ss_pred cCCCCCEEECCCCCC------cccc-------ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCc--C
Confidence 677777777776542 2111 234457777777766 3331 11112245778888888887765 3
Q ss_pred HHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccCH
Q 007916 488 QCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTM 534 (585)
Q Consensus 488 ~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it~ 534 (585)
.. +..+++|+.|++++|.+++......+..+++|++|++++|+++.
T Consensus 109 ~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 109 SG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HH-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred Cc-cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 32 45677888888888887553333456777888888888887644
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.51 E-value=8.5e-09 Score=91.15 Aligned_cols=130 Identities=14% Similarity=0.117 Sum_probs=86.3
Q ss_pred CccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHH
Q 007916 385 CRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFE 463 (585)
Q Consensus 385 ~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~ 463 (585)
+++|++|+++.+.+++. ..+ ..+++|+.|++++|.. +.. ......+++|+.|++++ .+++ +.
T Consensus 47 l~~L~~L~ls~n~l~~l--~~~-~~l~~L~~L~l~~n~l------~~l------~~~~~~~~~L~~L~L~~N~l~~--l~ 109 (198)
T 1ds9_A 47 LKACKHLALSTNNIEKI--SSL-SGMENLRILSLGRNLI------KKI------ENLDAVADTLEELWISYNQIAS--LS 109 (198)
T ss_dssp TTTCSEEECSEEEESCC--CCH-HHHTTCCEEEEEEEEE------CSC------SSHHHHHHHCSEEEEEEEECCC--HH
T ss_pred CCCCCEEECCCCCCccc--ccc-ccCCCCCEEECCCCCc------ccc------cchhhcCCcCCEEECcCCcCCc--CC
Confidence 44444444443444331 122 3678899999987653 321 12234457899999987 5554 23
Q ss_pred HHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChH---------HHHHHHhcCcCCcEEEccccccCH
Q 007916 464 YIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNE---------ALLSGLEKYESMRSLWMSACNVTM 534 (585)
Q Consensus 464 ~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~---------~l~~~~~~l~~L~~L~l~~~~it~ 534 (585)
.+. .+++|+.|++++|.+++.+....+..+++|+.|++++|++++. .....+..+++|+.|+ +++++.
T Consensus 110 ~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 110 GIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred ccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 444 7889999999999998754434568899999999999988332 1223468899999887 777654
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.50 E-value=9.7e-10 Score=113.35 Aligned_cols=56 Identities=14% Similarity=0.083 Sum_probs=33.0
Q ss_pred CCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCC
Q 007916 304 NLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPAD 363 (585)
Q Consensus 304 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 363 (585)
.|+.|++++|.++. ++. +..+++|+.|+++++... .++..+..+++|+.|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 497 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA 497 (567)
T ss_dssp TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC
Confidence 57777777777554 223 456667777777655222 333344556666666666653
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.50 E-value=5.9e-09 Score=93.76 Aligned_cols=111 Identities=14% Similarity=0.169 Sum_probs=73.0
Q ss_pred hCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHH
Q 007916 409 NCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGM 487 (585)
Q Consensus 409 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l 487 (585)
.+++|+.|+++++. ++..+ ...+..+++|+.|++++ .++......+. .+++|+.|++++|.++...
T Consensus 55 ~l~~L~~L~L~~N~------i~~i~-----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~- 121 (220)
T 2v70_A 55 KLPQLRKINFSNNK------ITDIE-----EGAFEGASGVNEILLTSNRLENVQHKMFK-GLESLKTLMLRSNRITCVG- 121 (220)
T ss_dssp GCTTCCEEECCSSC------CCEEC-----TTTTTTCTTCCEEECCSSCCCCCCGGGGT-TCSSCCEEECTTSCCCCBC-
T ss_pred cCCCCCEEECCCCc------CCEEC-----HHHhCCCCCCCEEECCCCccCccCHhHhc-CCcCCCEEECCCCcCCeEC-
Confidence 56777777777553 22110 11234667888888876 44433222233 6788999999988875421
Q ss_pred HHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccC
Q 007916 488 QCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVT 533 (585)
Q Consensus 488 ~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it 533 (585)
...+..+++|+.|++++|.++.. .+..+..+++|+.|+|++|+++
T Consensus 122 ~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 122 NDSFIGLSSVRLLSLYDNQITTV-APGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTSSTTCTTCSEEECTTSCCCCB-CTTTTTTCTTCCEEECCSCCEE
T ss_pred HhHcCCCccCCEEECCCCcCCEE-CHHHhcCCCCCCEEEecCcCCc
Confidence 12346789999999999998442 1245678899999999999854
No 128
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.48 E-value=3.7e-08 Score=87.85 Aligned_cols=132 Identities=17% Similarity=0.161 Sum_probs=74.5
Q ss_pred CCCCCEEEcccCCCCccccccccccccCCCCcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHh
Q 007916 169 CKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVR 247 (585)
Q Consensus 169 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 247 (585)
.++|++|++++|.++..... ....+++|++|+++++... ++.. .+..+++|++|++++|... .+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~-~~------ 91 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNG----VFDELTSLTQLYLGGNKLQSLPNG----VFNKLTSLTYLNLSTNQLQ-SL------ 91 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCC-CC------
T ss_pred CCCCcEEEcCCCccCcCChh----hhcccccCcEEECCCCccCccChh----hcCCCCCcCEEECCCCcCC-cc------
Confidence 45788888888877654322 2246778888888776432 2221 1456777888887776411 10
Q ss_pred CCccccccCcccccccCCCchhhHHHHhhcCCcccccccccccCcCCHHHHhhcCCCCcEEEecccccCChhHHHHHhcC
Q 007916 248 APQLEELGTGSFLQDLTARPYADLESAFNNCKNIHTLSGLWEAVPLYLPALYNSCANLTFLNLSYTALQSGEFAKLVVHC 327 (585)
Q Consensus 248 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~~~~L~~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~ 327 (585)
.+..+..+++|++|++++|.+... ....+..+
T Consensus 92 -----------------------------------------------~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l 123 (208)
T 2o6s_A 92 -----------------------------------------------PNGVFDKLTQLKELALNTNQLQSL-PDGVFDKL 123 (208)
T ss_dssp -----------------------------------------------CTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTC
T ss_pred -----------------------------------------------CHhHhcCccCCCEEEcCCCcCccc-CHhHhccC
Confidence 011133456777777777664432 11223456
Q ss_pred CCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCC
Q 007916 328 PRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPAD 363 (585)
Q Consensus 328 ~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 363 (585)
++|+.|++.++.........+..+++|+.|++.++.
T Consensus 124 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 124 TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 677777776542222112224556778888888753
No 129
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.47 E-value=3.9e-09 Score=94.99 Aligned_cols=110 Identities=11% Similarity=0.072 Sum_probs=69.2
Q ss_pred hCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHH
Q 007916 409 NCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGM 487 (585)
Q Consensus 409 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l 487 (585)
.+++|+.|+++++.. +. .....+.++++|++|++++ .++.-... +...+++|+.|++++|.++....
T Consensus 54 ~l~~L~~L~Ls~N~i------~~-----~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~f~~l~~L~~L~L~~N~l~~~~~ 121 (220)
T 2v9t_B 54 PYKKLRRIDLSNNQI------SE-----LAPDAFQGLRSLNSLVLYGNKITELPKS-LFEGLFSLQLLLLNANKINCLRV 121 (220)
T ss_dssp TCTTCCEEECCSSCC------CE-----ECTTTTTTCSSCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCCCCEEECCCCcC------CC-----cCHHHhhCCcCCCEEECCCCcCCccCHh-HccCCCCCCEEECCCCCCCEeCH
Confidence 456777777765532 21 0011234567777787776 33321111 11267888888888888754321
Q ss_pred HHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEcccccc
Q 007916 488 QCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNV 532 (585)
Q Consensus 488 ~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i 532 (585)
..+..+++|+.|++++|.++... ...+..+++|+.|+|++|++
T Consensus 122 -~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 122 -DAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp -TTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCE
T ss_pred -HHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEeCCCCc
Confidence 23467889999999999884431 13456788999999999985
No 130
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.46 E-value=8.3e-08 Score=86.84 Aligned_cols=129 Identities=15% Similarity=0.067 Sum_probs=73.1
Q ss_pred CCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCC
Q 007916 119 PFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFT 198 (585)
Q Consensus 119 ~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~ 198 (585)
++|+.|+++++.++......+. .+++|++|+++++. ++. .....+..+++|++|+|++|.++..... ....++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~N~-l~~-i~~~~~~~l~~L~~L~Ls~N~l~~l~~~----~~~~l~ 112 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFD-SLINLKELYLGSNQ-LGA-LPVGVFDSLTQLTVLDLGTNQLTVLPSA----VFDRLV 112 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSC-CCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCT
T ss_pred CCCCEEEcCCCccCccCHHHhh-CccCCcEEECCCCC-CCC-cChhhcccCCCcCEEECCCCcCCccChh----HhCcch
Confidence 5677777777765543222222 35677777777654 321 1112234667777777777776654322 124567
Q ss_pred CcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhCCccccccCccc
Q 007916 199 SLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSF 259 (585)
Q Consensus 199 ~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 259 (585)
+|+.|+++++... ++.. +..+++|+.|++++|....-.+..+..+++|+.|++.++
T Consensus 113 ~L~~L~Ls~N~l~~lp~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 113 HLKELFMCCNKLTELPRG-----IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp TCCEEECCSSCCCSCCTT-----GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred hhCeEeccCCcccccCcc-----cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 7777777766533 3222 456677777777776422111234556677777777664
No 131
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.42 E-value=1.3e-07 Score=84.22 Aligned_cols=129 Identities=12% Similarity=0.115 Sum_probs=53.4
Q ss_pred CCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCC
Q 007916 119 PFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFT 198 (585)
Q Consensus 119 ~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~ 198 (585)
+++++|+++++.++..... ....+++|++|+++++. ++. .....+..+++|++|++++|.++..... ....++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~ 100 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNG-VFDELTSLTQLYLGGNK-LQS-LPNGVFNKLTSLTYLNLSTNQLQSLPNG----VFDKLT 100 (208)
T ss_dssp TTCSEEECCSSCCCCCCTT-TTTTCTTCSEEECCSSC-CCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCT
T ss_pred CCCcEEEcCCCccCcCChh-hhcccccCcEEECCCCc-cCc-cChhhcCCCCCcCEEECCCCcCCccCHh----HhcCcc
Confidence 3455555555544321111 11224555555555532 211 1111223455555555555554432211 113445
Q ss_pred CcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhCCccccccCcc
Q 007916 199 SLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGS 258 (585)
Q Consensus 199 ~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 258 (585)
+|++|+++++... ++.. .+..+++|++|++++|......+..+..+++|+.|++.+
T Consensus 101 ~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 101 QLKELALNTNQLQSLPDG----VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp TCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEcCCCcCcccCHh----HhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecC
Confidence 5555555554322 1111 133455555555555432211122234455555555544
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.42 E-value=1.4e-07 Score=81.52 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=7.7
Q ss_pred hCCCCCEEEcccCCCC
Q 007916 168 HCKNLTELDIQENGIE 183 (585)
Q Consensus 168 ~~~~L~~L~L~~~~~~ 183 (585)
.+++|++|++++|.++
T Consensus 86 ~l~~L~~L~L~~N~i~ 101 (176)
T 1a9n_A 86 ALPDLTELILTNNSLV 101 (176)
T ss_dssp HCTTCCEEECCSCCCC
T ss_pred cCCCCCEEECCCCcCC
Confidence 4445555555544443
No 133
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.37 E-value=7.8e-08 Score=86.37 Aligned_cols=130 Identities=15% Similarity=0.142 Sum_probs=59.5
Q ss_pred CCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCC
Q 007916 119 PFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFT 198 (585)
Q Consensus 119 ~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~ 198 (585)
++++.|+++++.++......+ ..+++|+.|+++++. ++. ..+..+..+++|++|+|++|.++..+... ...++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~-~~l~~L~~L~Ls~N~-i~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~----f~~l~ 104 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAF-SPYKKLRRIDLSNNQ-ISE-LAPDAFQGLRSLNSLVLYGNKITELPKSL----FEGLF 104 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSS-TTCTTCCEEECCSSC-CCE-ECTTTTTTCSSCCEEECCSSCCCCCCTTT----TTTCT
T ss_pred cCCCEEECCCCcCCCcCHhHh-hCCCCCCEEECCCCc-CCC-cCHHHhhCCcCCCEEECCCCcCCccCHhH----ccCCC
Confidence 355666666554443211111 124556666666543 221 11222335566666666666555432211 13455
Q ss_pred CcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhCCccccccCccc
Q 007916 199 SLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSF 259 (585)
Q Consensus 199 ~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 259 (585)
+|+.|+++++... +.... +..+++|+.|++++|....-.+..+..+++|+.|++.++
T Consensus 105 ~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 105 SLQLLLLNANKINCLRVDA----FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp TCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEECCCCCCCEeCHHH----cCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 6666666655422 11111 445556666666655422212233444555555555543
No 134
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.36 E-value=3.4e-06 Score=72.52 Aligned_cols=129 Identities=14% Similarity=0.119 Sum_probs=97.7
Q ss_pred hHHHHHHHHhhCCCCcEEEeccc-ccChHHHHHHHhhC---CCccEEEecCCCCCCHHHH---HHHHHhCCCCCEEEccc
Q 007916 107 IHAWLVAFAAKYPFLEELRLKRM-AVSDESLEFLASNF---PNFKLLSLLSCDGFSTDGL---AAIATHCKNLTELDIQE 179 (585)
Q Consensus 107 ~~~~l~~l~~~~~~L~~L~l~~~-~l~~~~l~~i~~~~---~~L~~L~l~~~~~~~~~~l---~~~~~~~~~L~~L~L~~ 179 (585)
+...+..+...-+.|++|+|+++ .+.+++...++..+ ..|+.|+|++|. +++.+. ..++..-+.|++|+|+.
T Consensus 29 v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 29 VESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp HHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCC
Confidence 45567777778889999999986 89998888887655 359999999865 766654 44456778899999999
Q ss_pred CCCCccccccccccccCCCCcCEEEeccCCC-CCChHH---HHHHHhcCCCCcEEEecCCc
Q 007916 180 NGIEDSSGSWLSCFPESFTSLEVLNFANLTS-EVNTDA---LERLVSRCKSLKVLKVNKSI 236 (585)
Q Consensus 180 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~-~~~~~~---l~~l~~~~~~L~~L~l~~~~ 236 (585)
|.+++.+...+......-+.|+.|+++++.. .+.+.+ +...+...+.|+.|+++.+.
T Consensus 108 N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 108 NFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp SBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 9998888777776666677799999986544 466654 45556677889888887654
No 135
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.34 E-value=5.6e-07 Score=92.31 Aligned_cols=110 Identities=25% Similarity=0.236 Sum_probs=67.2
Q ss_pred CCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCC
Q 007916 119 PFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFT 198 (585)
Q Consensus 119 ~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~ 198 (585)
++|+.|++++|.++. +. ..+++|+.|++++|. ++. ++. +. .+|++|++++|.++..+ ..++
T Consensus 80 ~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~-l~~--ip~-l~--~~L~~L~Ls~N~l~~lp--------~~l~ 140 (571)
T 3cvr_A 80 PQITVLEITQNALIS--LP---ELPASLEYLDACDNR-LST--LPE-LP--ASLKHLDVDNNQLTMLP--------ELPA 140 (571)
T ss_dssp TTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSC-CSC--CCC-CC--TTCCEEECCSSCCSCCC--------CCCT
T ss_pred CCCCEEECcCCCCcc--cc---cccCCCCEEEccCCC-CCC--cch-hh--cCCCEEECCCCcCCCCC--------CcCc
Confidence 678888888876663 11 336778888888764 322 222 21 27888888887766522 2567
Q ss_pred CcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhCCccccccCccc
Q 007916 199 SLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSF 259 (585)
Q Consensus 199 ~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 259 (585)
+|+.|+++++... ++. .+++|+.|++++|.. ..++. +. ++|+.|++.++
T Consensus 141 ~L~~L~Ls~N~l~~lp~--------~l~~L~~L~Ls~N~L-~~lp~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 141 LLEYINADNNQLTMLPE--------LPTSLEVLSVRNNQL-TFLPE-LP--ESLEALDVSTN 190 (571)
T ss_dssp TCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCC-SCCCC-CC--TTCCEEECCSS
T ss_pred cccEEeCCCCccCcCCC--------cCCCcCEEECCCCCC-CCcch-hh--CCCCEEECcCC
Confidence 7888888777532 221 456788888877752 22333 22 66777777664
No 136
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.34 E-value=9.5e-08 Score=85.82 Aligned_cols=131 Identities=13% Similarity=0.126 Sum_probs=62.4
Q ss_pred CCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCC
Q 007916 119 PFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFT 198 (585)
Q Consensus 119 ~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~ 198 (585)
+.++.|+++++.++..........+++|+.|+++++. ++.. .+..+..+++|++|++++|.++...... ...++
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~ 105 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDI-EEGAFEGASGVNEILLTSNRLENVQHKM----FKGLE 105 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEE-CTTTTTTCTTCCEEECCSSCCCCCCGGG----GTTCS
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEE-CHHHhCCCCCCCEEECCCCccCccCHhH----hcCCc
Confidence 3455666666654432111112235566666666543 3211 1112335566666666666655433221 13456
Q ss_pred CcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcchhHHHHHHHhCCccccccCccc
Q 007916 199 SLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSISLEQLQRLLVRAPQLEELGTGSF 259 (585)
Q Consensus 199 ~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 259 (585)
+|++|+++++... +.... +..+++|+.|++++|....-.+..+..+++|+.|++.++
T Consensus 106 ~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 106 SLKTLMLRSNRITCVGNDS----FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp SCCEEECTTSCCCCBCTTS----STTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCCEEECCCCcCCeECHhH----cCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 6666666655422 11111 345566666666665432222444555566666666553
No 137
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.28 E-value=1e-08 Score=99.65 Aligned_cols=201 Identities=13% Similarity=0.038 Sum_probs=103.5
Q ss_pred CCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHH-HHHhcCCCCcEEEecCCCCCchhhccccChhhHHHH
Q 007916 303 ANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLE-AVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAV 381 (585)
Q Consensus 303 ~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 381 (585)
+++++|++++|.++.. -...+..+++|+.|+++++.....++ ..+..+++++++.+..++. ++.... ..
T Consensus 30 ~~l~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~--------l~~l~~-~~ 99 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN--------LLYINP-EA 99 (350)
T ss_dssp TTCSEEEEESCCCSEE-CTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT--------CCEECT-TS
T ss_pred CCCCEEEccCCcCCCc-CHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc--------ccccCc-hh
Confidence 6899999999986542 11235678899999998763222111 1234566666654443211 221111 11
Q ss_pred HhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcC-CCCcEEEccc-CCCh
Q 007916 382 SFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTC-SKLQRLSVSG-LLTD 459 (585)
Q Consensus 382 ~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~-~~L~~L~l~~-~~~~ 459 (585)
...+++|++|.++.+.++........ ...++..+.+.++. .+...+.. .+..+ ..++.|++++ .++.
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~l~~l~l~~~~-----~i~~l~~~-----~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPDVHKI-HSLQKVLLDIQDNI-----NIHTIERN-----SFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCCCCTTC-CBSSCEEEEEESCT-----TCCEECTT-----SSTTSBSSCEEEECCSSCCCE
T ss_pred hhhccccccccccccccccCCchhhc-ccchhhhhhhcccc-----cccccccc-----chhhcchhhhhhccccccccC
Confidence 12467788887776666432111111 23355566665421 23311100 01122 4577888876 4432
Q ss_pred hHHHHHhhcCccccceecccc-cCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccc
Q 007916 460 LTFEYIGKYAKNLETLSVAFA-GRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACN 531 (585)
Q Consensus 460 ~~~~~l~~~~~~L~~L~l~~~-~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~ 531 (585)
-... +-...+|++|.++++ .++... ...+.++++|+.|++++|.++.. +. ..+.+|+.|.+.++.
T Consensus 169 i~~~--~f~~~~L~~l~l~~~n~l~~i~-~~~f~~l~~L~~LdLs~N~l~~l--p~--~~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 169 IHNS--AFNGTQLDELNLSDNNNLEELP-NDVFHGASGPVILDISRTRIHSL--PS--YGLENLKKLRARSTY 234 (350)
T ss_dssp ECTT--SSTTEEEEEEECTTCTTCCCCC-TTTTTTEECCSEEECTTSCCCCC--CS--SSCTTCCEEECTTCT
T ss_pred CChh--hccccchhHHhhccCCcccCCC-HHHhccCcccchhhcCCCCcCcc--Ch--hhhccchHhhhccCC
Confidence 1111 113467888888754 443311 11246678889999988887432 11 234566666655553
No 138
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.22 E-value=1.6e-07 Score=91.62 Aligned_cols=157 Identities=14% Similarity=0.084 Sum_probs=79.5
Q ss_pred CCCcEEEecccccCChhHHHHHh-cCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHHHH
Q 007916 303 ANLTFLNLSYTALQSGEFAKLVV-HCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFVAV 381 (585)
Q Consensus 303 ~~L~~L~l~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 381 (585)
+.++.|++++|.++.... ..+. .+++|+.|+++++.........+..+++|+.|+++++.
T Consensus 39 ~~l~~L~Ls~N~l~~l~~-~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~------------------ 99 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRA-EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH------------------ 99 (361)
T ss_dssp TTCSEEECCSSCCCEECT-TSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC------------------
T ss_pred CCCCEEECCCCCCCccCh-hhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc------------------
Confidence 457888888887554311 1222 56777777777652221111223455666666666653
Q ss_pred HhcCccchhhhccCCCCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChh
Q 007916 382 SFGCRRLHYVLYFCRQMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDL 460 (585)
Q Consensus 382 ~~~~~~L~~L~~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~ 460 (585)
++..... ....+++|+.|++++|.. +.. ....+..+++|+.|++++ .++.-
T Consensus 100 ----------------l~~~~~~-~~~~l~~L~~L~L~~N~i------~~~-----~~~~~~~l~~L~~L~L~~N~l~~l 151 (361)
T 2xot_A 100 ----------------LHTLDEF-LFSDLQALEVLLLYNNHI------VVV-----DRNAFEDMAQLQKLYLSQNQISRF 151 (361)
T ss_dssp ----------------CCEECTT-TTTTCTTCCEEECCSSCC------CEE-----CTTTTTTCTTCCEEECCSSCCCSC
T ss_pred ----------------CCcCCHH-HhCCCcCCCEEECCCCcc------cEE-----CHHHhCCcccCCEEECCCCcCCee
Confidence 2211000 112455666666664432 210 011134456666666665 33321
Q ss_pred HHHHHh--hcCccccceecccccCChHHHHHHHhcCCC--ccEEEecCCCC
Q 007916 461 TFEYIG--KYAKNLETLSVAFAGRSDRGMQCVLEGCPK--LRKLEIRDCPF 507 (585)
Q Consensus 461 ~~~~l~--~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~--L~~L~l~~~~~ 507 (585)
....+. ..+++|+.|+|++|.++...... +..++. |+.|++++|++
T Consensus 152 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~-~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTD-LQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CGGGTC----CTTCCEEECCSSCCCCCCHHH-HHHSCHHHHTTEECCSSCE
T ss_pred CHHHhcCcccCCcCCEEECCCCCCCccCHHH-hhhccHhhcceEEecCCCc
Confidence 111110 25677788888877765433322 345565 47788888876
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.18 E-value=1.2e-07 Score=100.98 Aligned_cols=107 Identities=17% Similarity=0.131 Sum_probs=61.3
Q ss_pred hCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHH
Q 007916 409 NCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGM 487 (585)
Q Consensus 409 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l 487 (585)
.+++|+.|+|+++.. ..++ .. +..+++|++|+|++ .++ .....++ .+++|+.|+|++|.++. +
T Consensus 222 ~l~~L~~L~Ls~n~l------~~l~--~~----~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~~--l 285 (727)
T 4b8c_D 222 DDQLWHALDLSNLQI------FNIS--AN----IFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLTS--L 285 (727)
T ss_dssp CCCCCCEEECTTSCC------SCCC--GG----GGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCSS--C
T ss_pred cCCCCcEEECCCCCC------CCCC--hh----hcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCCc--c
Confidence 556677777765432 2111 11 22566677777766 333 2222232 56677777777776652 3
Q ss_pred HHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccC
Q 007916 488 QCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVT 533 (585)
Q Consensus 488 ~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it 533 (585)
...+..+++|+.|+|++|.++. ++..+..+++|+.|+|++|+++
T Consensus 286 p~~~~~l~~L~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNMVTT--LPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CSSGGGGTTCSEEECCSSCCCC--CCSSTTSCTTCCCEECTTSCCC
T ss_pred ChhhcCCCCCCEEECCCCCCCc--cChhhhcCCCccEEeCCCCccC
Confidence 3344566777777777776642 3334566677777777777765
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.14 E-value=4.4e-07 Score=79.52 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=73.1
Q ss_pred CCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHH
Q 007916 411 PNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQC 489 (585)
Q Consensus 411 ~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~ 489 (585)
++|++|+++++.. +..+... .+..+++|++|++++ .++......+. .+++|+.|++++|.++.... .
T Consensus 29 ~~l~~L~l~~n~i------~~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~-~ 96 (192)
T 1w8a_A 29 LHTTELLLNDNEL------GRISSDG----LFGRLPHLVKLELKRNQLTGIEPNAFE-GASHIQELQLGENKIKEISN-K 96 (192)
T ss_dssp TTCSEEECCSCCC------CSBCCSC----SGGGCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSCCCCEECS-S
T ss_pred CCCCEEECCCCcC------CccCCcc----ccccCCCCCEEECCCCCCCCcCHhHcC-CcccCCEEECCCCcCCccCH-H
Confidence 3777888876543 2111010 235677888888877 45443333333 67889999999998765321 1
Q ss_pred HHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccC
Q 007916 490 VLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVT 533 (585)
Q Consensus 490 l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it 533 (585)
.+..+++|++|++++|.++.. .+..+..+++|++|+|++|+++
T Consensus 97 ~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 97 MFLGLHQLKTLNLYDNQISCV-MPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SSTTCTTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECTTCCBC
T ss_pred HhcCCCCCCEEECCCCcCCee-CHHHhhcCCCCCEEEeCCCCcc
Confidence 246689999999999998543 2345577899999999999864
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.13 E-value=2.8e-07 Score=80.76 Aligned_cols=107 Identities=15% Similarity=0.149 Sum_probs=73.2
Q ss_pred CCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHH
Q 007916 411 PNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQC 489 (585)
Q Consensus 411 ~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~ 489 (585)
++|++|+++++. ++..+ ..+.++++|+.|++++ .++......+. .+++|+.|++++|.++.... .
T Consensus 31 ~~l~~L~L~~n~------i~~ip------~~~~~l~~L~~L~Ls~N~i~~i~~~~f~-~l~~L~~L~Ls~N~l~~i~~-~ 96 (193)
T 2wfh_A 31 RDVTELYLDGNQ------FTLVP------KELSNYKHLTLIDLSNNRISTLSNQSFS-NMTQLLTLILSYNRLRCIPP-R 96 (193)
T ss_dssp TTCCEEECCSSC------CCSCC------GGGGGCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCBCCT-T
T ss_pred CCCCEEECCCCc------CchhH------HHhhcccCCCEEECCCCcCCEeCHhHcc-CCCCCCEEECCCCccCEeCH-H
Confidence 578888887554 33221 1245678888888877 44433322233 67899999999998765321 1
Q ss_pred HHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEcccccc
Q 007916 490 VLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNV 532 (585)
Q Consensus 490 l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i 532 (585)
.+..+++|+.|++++|.++... ...+..+++|+.|+|++|++
T Consensus 97 ~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 97 TFDGLKSLRLLSLHGNDISVVP-EGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECCSSCE
T ss_pred HhCCCCCCCEEECCCCCCCeeC-hhhhhcCccccEEEeCCCCe
Confidence 3467899999999999985321 13456789999999999985
No 142
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.12 E-value=1.5e-07 Score=91.28 Aligned_cols=58 Identities=19% Similarity=0.141 Sum_probs=27.4
Q ss_pred hhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecC
Q 007916 299 YNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFP 361 (585)
Q Consensus 299 ~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~ 361 (585)
+..+++|+.|++++|.++.- +. ..+.+|+.|.+.++..-..++. +..+++|+.+++.+
T Consensus 198 f~~l~~L~~LdLs~N~l~~l--p~--~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 198 FHGASGPVILDISRTRIHSL--PS--YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TTTEECCSEEECTTSCCCCC--CS--SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred hccCcccchhhcCCCCcCcc--Ch--hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 34566777777777664431 10 2245555655544322222221 23445555555543
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.08 E-value=1.1e-06 Score=75.79 Aligned_cols=119 Identities=14% Similarity=0.156 Sum_probs=76.1
Q ss_pred CCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHH
Q 007916 410 CPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQ 488 (585)
Q Consensus 410 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~ 488 (585)
.++|++|+++++.. +..+ ...+..+++|++|++++ .++......++ .+++|+.|++++|.++... .
T Consensus 27 ~~~l~~L~l~~n~l------~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~-~ 93 (177)
T 2o6r_A 27 PSSATRLELESNKL------QSLP-----HGVFDKLTQLTKLSLSQNQIQSLPDGVFD-KLTKLTILYLHENKLQSLP-N 93 (177)
T ss_dssp CTTCSEEECCSSCC------CCCC-----TTTTTTCTTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCC-T
T ss_pred CCCCcEEEeCCCcc------cEeC-----HHHhcCcccccEEECCCCcceEeChhHcc-CCCccCEEECCCCCccccC-H
Confidence 35778888876543 2111 11234667888888876 44422222222 6789999999999876421 1
Q ss_pred HHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEccccccCH--HHHHHHHh
Q 007916 489 CVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNVTM--NACRRLAK 542 (585)
Q Consensus 489 ~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~it~--~~~~~~~~ 542 (585)
..+..+++|+.|++++|.++.. ....+..+++|++|++++|+++. ..+..+..
T Consensus 94 ~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~ 148 (177)
T 2o6r_A 94 GVFDKLTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 148 (177)
T ss_dssp TTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHH
T ss_pred HHhhCCcccCEEECcCCcceEe-CHHHhcCCcccCEEEecCCCeeccCccHHHHHH
Confidence 1346789999999999998532 11345678999999999999643 33444443
No 144
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.04 E-value=5.7e-07 Score=95.84 Aligned_cols=62 Identities=24% Similarity=0.212 Sum_probs=32.8
Q ss_pred hhcCCCCcEEEecccccCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCC
Q 007916 299 YNSCANLTFLNLSYTALQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPAD 363 (585)
Q Consensus 299 ~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 363 (585)
+..+++|+.|+|++|.++. ++..+..+++|+.|++.++... .++..+..+++|+.|+|++|.
T Consensus 266 ~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 266 IKNLSNLRVLDLSHNRLTS--LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp GGGGTTCCEEECTTSCCSS--CCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSC
T ss_pred hhCCCCCCEEeCcCCcCCc--cChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCc
Confidence 3445666666666665441 3333455566666666654221 222224555666666666654
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.95 E-value=3.4e-06 Score=73.74 Aligned_cols=109 Identities=19% Similarity=0.163 Sum_probs=71.0
Q ss_pred CCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCC
Q 007916 119 PFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFT 198 (585)
Q Consensus 119 ~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~ 198 (585)
++++.|+++++.++......+...+++|++|+++++. ++. ..+..+..+++|++|++++|.++...... ...++
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~ 102 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTG-IEPNAFEGASHIQELQLGENKIKEISNKM----FLGLH 102 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCC-BCTTTTTTCTTCCEEECCSCCCCEECSSS----STTCT
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCC-cCHhHcCCcccCCEEECCCCcCCccCHHH----hcCCC
Confidence 4788888888876543222223347888999988865 422 11334457888999999888877654322 24678
Q ss_pred CcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcc
Q 007916 199 SLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSIS 237 (585)
Q Consensus 199 ~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~ 237 (585)
+|++|+++++... +.... +..+++|++|++++|..
T Consensus 103 ~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 103 QLKTLNLYDNQISCVMPGS----FEHLNSLTSLNLASNPF 138 (192)
T ss_dssp TCCEEECCSSCCCEECTTS----STTCTTCCEEECTTCCB
T ss_pred CCCEEECCCCcCCeeCHHH----hhcCCCCCEEEeCCCCc
Confidence 8888888887533 11111 55678888888888753
No 146
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.90 E-value=6.9e-06 Score=70.77 Aligned_cols=109 Identities=16% Similarity=0.154 Sum_probs=69.3
Q ss_pred CCCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCC
Q 007916 118 YPFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESF 197 (585)
Q Consensus 118 ~~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 197 (585)
.++|++|+++++.++......+ ..+++|++|+++++. ++. .....+..+++|++|++++|.++..... ....+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~----~~~~l 99 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVF-DKLTQLTKLSLSQNQ-IQS-LPDGVFDKLTKLTILYLHENKLQSLPNG----VFDKL 99 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTT-TTCTTCSEEECCSSC-CCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT----TTTTC
T ss_pred CCCCcEEEeCCCcccEeCHHHh-cCcccccEEECCCCc-ceE-eChhHccCCCccCEEECCCCCccccCHH----HhhCC
Confidence 3678888888886654221112 336788888888764 431 1122335788888888888887764322 22467
Q ss_pred CCcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCcc
Q 007916 198 TSLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSIS 237 (585)
Q Consensus 198 ~~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~ 237 (585)
++|+.|+++++... ++.. ++..+++|++|++++|..
T Consensus 100 ~~L~~L~l~~N~l~~~~~~----~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 100 TQLKELALDTNQLKSVPDG----IFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TTCCEEECCSSCCSCCCTT----TTTTCTTCCEEECCSSCB
T ss_pred cccCEEECcCCcceEeCHH----HhcCCcccCEEEecCCCe
Confidence 88888888877533 2222 145678888888888763
No 147
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.90 E-value=9.6e-06 Score=70.86 Aligned_cols=106 Identities=18% Similarity=0.122 Sum_probs=69.5
Q ss_pred CCCcEEEecccccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCC
Q 007916 119 PFLEELRLKRMAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFT 198 (585)
Q Consensus 119 ~~L~~L~l~~~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~ 198 (585)
+++++|+++++.++.-. .. ...+++|+.|+++++. ++.. .+..+..+++|++|+|++|.++...... ...++
T Consensus 31 ~~l~~L~L~~n~i~~ip-~~-~~~l~~L~~L~Ls~N~-i~~i-~~~~f~~l~~L~~L~Ls~N~l~~i~~~~----f~~l~ 102 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP-KE-LSNYKHLTLIDLSNNR-ISTL-SNQSFSNMTQLLTLILSYNRLRCIPPRT----FDGLK 102 (193)
T ss_dssp TTCCEEECCSSCCCSCC-GG-GGGCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSCCCBCCTTT----TTTCT
T ss_pred CCCCEEECCCCcCchhH-HH-hhcccCCCEEECCCCc-CCEe-CHhHccCCCCCCEEECCCCccCEeCHHH----hCCCC
Confidence 57888888888766421 22 2347888888888765 4221 1223457888888888888877654322 24678
Q ss_pred CcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCc
Q 007916 199 SLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSI 236 (585)
Q Consensus 199 ~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~ 236 (585)
+|+.|+++++... ++... +..+++|+.|++++|.
T Consensus 103 ~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 103 SLRLLSLHGNDISVVPEGA----FNDLSALSHLAIGANP 137 (193)
T ss_dssp TCCEEECCSSCCCBCCTTT----TTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCCCCeeChhh----hhcCccccEEEeCCCC
Confidence 8888888887543 22221 5567888888888775
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.84 E-value=9.1e-07 Score=87.35 Aligned_cols=78 Identities=14% Similarity=0.297 Sum_probs=38.2
Q ss_pred HhcCCCCcEEEcccCCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcC
Q 007916 442 VKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYES 521 (585)
Q Consensus 442 ~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~ 521 (585)
+.+|.+|+.+.+...++.-+-.++. .|.+|+.+.+..+ ++..+-. .+.+|++|+.+++..+--. +...+.+|++
T Consensus 316 F~~c~~L~~i~lp~~v~~I~~~aF~-~c~~L~~i~lp~~-l~~I~~~-aF~~C~~L~~i~lp~~~~~---~~~~F~~c~~ 389 (394)
T 4fs7_A 316 FESCTSLVSIDLPYLVEEIGKRSFR-GCTSLSNINFPLS-LRKIGAN-AFQGCINLKKVELPKRLEQ---YRYDFEDTTK 389 (394)
T ss_dssp TTTCTTCCEECCCTTCCEECTTTTT-TCTTCCEECCCTT-CCEECTT-TBTTCTTCCEEEEEGGGGG---GGGGBCTTCE
T ss_pred hcCCCCCCEEEeCCcccEEhHHhcc-CCCCCCEEEECcc-ccEehHH-HhhCCCCCCEEEECCCCEE---hhheecCCCC
Confidence 4466777777775422211111111 5677777777544 2211111 2356777777777543211 1123455666
Q ss_pred CcEE
Q 007916 522 MRSL 525 (585)
Q Consensus 522 L~~L 525 (585)
|+.+
T Consensus 390 L~~I 393 (394)
T 4fs7_A 390 FKWI 393 (394)
T ss_dssp EEEE
T ss_pred CcEE
Confidence 6654
No 149
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.79 E-value=9.3e-06 Score=73.17 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=34.7
Q ss_pred hhcCCCHHHHHHHHhccCChhHHHHHHHHhHHHHHHHh
Q 007916 19 VTASFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAER 56 (585)
Q Consensus 19 ~i~~LP~eil~~If~~L~~~~d~~~~~~Vck~w~~~~~ 56 (585)
.++.||+||+.+||+|| +++|+.++++|||+|+.++.
T Consensus 4 ~l~~LP~ei~l~IlsfL-~p~DL~~l~~vcr~Wr~la~ 40 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFL-SPHDLCQLGSTNHYWNETVR 40 (312)
T ss_dssp HHHHSCHHHHHHHHHTS-CHHHHHHHHTTCHHHHHHHT
T ss_pred hhHhCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhc
Confidence 47889999999999999 59999999999999999987
No 150
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.75 E-value=9e-06 Score=74.37 Aligned_cols=38 Identities=26% Similarity=0.417 Sum_probs=35.1
Q ss_pred hhhcCCCHHHHHHHHhccCChhHHH-HHHHHhHHHHHHHh
Q 007916 18 AVTASFPDEVLEIVLSLLTSHRDRS-SVSLVCKDWYRAER 56 (585)
Q Consensus 18 ~~i~~LP~eil~~If~~L~~~~d~~-~~~~Vck~w~~~~~ 56 (585)
..+..||+|++.+||.+|| .++++ ++++|||+|++++.
T Consensus 49 ~~~~~LP~ell~~Il~~Lp-~~~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELP-ATELVQACRLVCLRWKELVD 87 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSC-HHHHHHTGGGTCHHHHHHHT
T ss_pred cChhhCCHHHHHHHHHcCC-HHHHHHHHHHHhHHHHHHhc
Confidence 4688999999999999996 88999 99999999999975
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.72 E-value=3e-05 Score=70.64 Aligned_cols=89 Identities=15% Similarity=0.301 Sum_probs=60.7
Q ss_pred HhhcCccccceecccccCCh-HHHHHHHhcCCCccEEEecCCCCChH-HHHHHHhcCcCCcEEEccccccCH------HH
Q 007916 465 IGKYAKNLETLSVAFAGRSD-RGMQCVLEGCPKLRKLEIRDCPFGNE-ALLSGLEKYESMRSLWMSACNVTM------NA 536 (585)
Q Consensus 465 l~~~~~~L~~L~l~~~~i~~-~~l~~l~~~~~~L~~L~l~~~~~~~~-~l~~~~~~l~~L~~L~l~~~~it~------~~ 536 (585)
+...+++|+.|+|++|.++. .++...+..+++|+.|+|++|.+++. .+ ..+..+ +|++|+|++|+++. .-
T Consensus 165 ~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l-~~l~~l-~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 165 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL-DKIKGL-KLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGG-GGGTTS-CCSEEECTTSTTGGGCSSHHHH
T ss_pred HHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhh-hhcccC-CcceEEccCCcCccccCcchhH
Confidence 33568889999999888755 23445567789999999999998543 22 222333 89999999999763 33
Q ss_pred HHHHHhhCCCCcEEEeccCCC
Q 007916 537 CRRLAKQMPRLNVEVMKEDGS 557 (585)
Q Consensus 537 ~~~~~~~~p~l~~~~~~~~~~ 557 (585)
...+...+|+| ..+++..+
T Consensus 243 ~~~il~~~P~L--~~LDg~~v 261 (267)
T 3rw6_A 243 ISAIRERFPKL--LRLDGHEL 261 (267)
T ss_dssp HHHHHHHCTTC--CEESSCBC
T ss_pred HHHHHHHCccc--CeECCcCC
Confidence 45667788885 34454433
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.60 E-value=9.5e-06 Score=69.52 Aligned_cols=84 Identities=15% Similarity=0.202 Sum_probs=58.0
Q ss_pred CCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHH-HHhcCCCccEEEecCCCCChHHHHHHHhcCcCCc
Q 007916 446 SKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQC-VLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMR 523 (585)
Q Consensus 446 ~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~-l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~ 523 (585)
++|+.|++++ .++......+. .+++|+.|+|++|+++. +.. .+..+++|+.|++++|.++.. ....+..+++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~ 108 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFD-HLVNLQQLYFNSNKLTA--IPTGVFDKLTQLTQLDLNDNHLKSI-PRGAFDNLKSLT 108 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCS
T ss_pred CCCcEEEeCCCCccccCHHHhc-CCcCCCEEECCCCCCCc--cChhHhCCcchhhEEECCCCcccee-CHHHhccccCCC
Confidence 5677777766 44332222223 67888888998888754 222 246789999999999998532 113367889999
Q ss_pred EEEccccccC
Q 007916 524 SLWMSACNVT 533 (585)
Q Consensus 524 ~L~l~~~~it 533 (585)
.|+|++|+++
T Consensus 109 ~L~L~~N~~~ 118 (174)
T 2r9u_A 109 HIYLYNNPWD 118 (174)
T ss_dssp EEECCSSCBC
T ss_pred EEEeCCCCcc
Confidence 9999999864
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.59 E-value=9.8e-06 Score=69.17 Aligned_cols=85 Identities=14% Similarity=0.164 Sum_probs=58.1
Q ss_pred CCCcEEEccc-CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcE
Q 007916 446 SKLQRLSVSG-LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRS 524 (585)
Q Consensus 446 ~~L~~L~l~~-~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~ 524 (585)
+.|+.|++++ .++......+. .+++|+.|++++|+++... ...+..+++|+.|++++|.++.. ....+..+++|+.
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~ 106 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFD-RLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDNQLKSI-PRGAFDNLKSLTH 106 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCcEEEcCCCcCCccChhhhc-CcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCCccCEe-CHHHhcCCCCCCE
Confidence 5677777766 33332222223 6788888999888875421 11246789999999999998432 1134678899999
Q ss_pred EEccccccC
Q 007916 525 LWMSACNVT 533 (585)
Q Consensus 525 L~l~~~~it 533 (585)
|+|++|+++
T Consensus 107 L~L~~N~~~ 115 (170)
T 3g39_A 107 IWLLNNPWD 115 (170)
T ss_dssp EECCSSCBC
T ss_pred EEeCCCCCC
Confidence 999999864
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.47 E-value=2.7e-06 Score=83.67 Aligned_cols=15 Identities=40% Similarity=0.397 Sum_probs=8.4
Q ss_pred hcCCCCcEEEecccc
Q 007916 300 NSCANLTFLNLSYTA 314 (585)
Q Consensus 300 ~~~~~L~~L~l~~~~ 314 (585)
..|++|+.+++..+.
T Consensus 177 ~~c~~L~~l~l~~n~ 191 (401)
T 4fdw_A 177 YYCYNLKKADLSKTK 191 (401)
T ss_dssp TTCTTCCEEECTTSC
T ss_pred hCcccCCeeecCCCc
Confidence 345666666665543
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.32 E-value=0.00069 Score=61.64 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=14.6
Q ss_pred CCcEEEecCCcchh------H-HHHHHHhCCccccccC
Q 007916 226 SLKVLKVNKSISLE------Q-LQRLLVRAPQLEELGT 256 (585)
Q Consensus 226 ~L~~L~l~~~~~~~------~-~~~~~~~~~~L~~L~l 256 (585)
+|+.|++.+|.... . ....+..+|+|+.|+-
T Consensus 221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 55555555554322 1 1234455555555554
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.32 E-value=1.1e-05 Score=79.51 Aligned_cols=161 Identities=14% Similarity=0.207 Sum_probs=78.8
Q ss_pred CCCCcEEEecccc--cCChhHHHHHhcCCCCcEEEecccCChhhHHHHHhcCCCCcEEEecCCCCCchhhccccChhhHH
Q 007916 302 CANLTFLNLSYTA--LQSGEFAKLVVHCPRLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPADPFDEEIIHGVTEEGFV 379 (585)
Q Consensus 302 ~~~L~~L~l~~~~--~~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 379 (585)
+.+|+.+.+.... +... ....|..|+.+.+......-+ ...+..+..++.+...... +.+.
T Consensus 229 ~~~l~~i~ip~~~~~i~~~----~f~~~~~l~~~~~~~~~~~i~-~~~F~~~~~l~~~~~~~~~---------i~~~--- 291 (394)
T 4fs7_A 229 KTGVKNIIIPDSFTELGKS----VFYGCTDLESISIQNNKLRIG-GSLFYNCSGLKKVIYGSVI---------VPEK--- 291 (394)
T ss_dssp TCCCCEEEECTTCCEECSS----TTTTCSSCCEEEECCTTCEEC-SCTTTTCTTCCEEEECSSE---------ECTT---
T ss_pred cCCCceEEECCCceecccc----cccccccceeEEcCCCcceee-ccccccccccceeccCcee---------eccc---
Confidence 4567777665432 2221 234566777776654321110 0112345566665554421 2111
Q ss_pred HHHhcCccchhhhccCC--CCCHHHHHHHHHhCCCCceEEeeccCCCCCCCCCCCcchhhHHHHHhcCCCCcEEEcccCC
Q 007916 380 AVSFGCRRLHYVLYFCR--QMTNAAVATIVQNCPNFTHFRLCIMTPGLPDYLTNEPMDEAFGAVVKTCSKLQRLSVSGLL 457 (585)
Q Consensus 380 ~~~~~~~~L~~L~~~~~--~l~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 457 (585)
.+..|.+|+.+.+..+ .+.+. ....|.+|+.+.+.. .++.. .+ ..+.+|.+|+.+.+...+
T Consensus 292 -~F~~~~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~-------~v~~I--~~---~aF~~c~~L~~i~lp~~l 354 (394)
T 4fs7_A 292 -TFYGCSSLTEVKLLDSVKFIGEE----AFESCTSLVSIDLPY-------LVEEI--GK---RSFRGCTSLSNINFPLSL 354 (394)
T ss_dssp -TTTTCTTCCEEEECTTCCEECTT----TTTTCTTCCEECCCT-------TCCEE--CT---TTTTTCTTCCEECCCTTC
T ss_pred -cccccccccccccccccceechh----hhcCCCCCCEEEeCC-------cccEE--hH---HhccCCCCCCEEEECccc
Confidence 1224566666543211 11111 123677888887732 23311 11 124578889998886532
Q ss_pred ChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEE
Q 007916 458 TDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKL 500 (585)
Q Consensus 458 ~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L 500 (585)
+.-+-.++ ..|++|+.+.+..+- +. +...+.+|++|+.+
T Consensus 355 ~~I~~~aF-~~C~~L~~i~lp~~~-~~--~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 355 RKIGANAF-QGCINLKKVELPKRL-EQ--YRYDFEDTTKFKWI 393 (394)
T ss_dssp CEECTTTB-TTCTTCCEEEEEGGG-GG--GGGGBCTTCEEEEE
T ss_pred cEehHHHh-hCCCCCCEEEECCCC-EE--hhheecCCCCCcEE
Confidence 22111122 278899999887542 11 12235678888775
No 157
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.27 E-value=0.00013 Score=62.03 Aligned_cols=99 Identities=18% Similarity=0.196 Sum_probs=50.7
Q ss_pred CCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccccCCCCcCEEEeccCCCC-CChHHHHHHHh
Q 007916 144 PNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSE-VNTDALERLVS 222 (585)
Q Consensus 144 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~l~~ 222 (585)
++|+.|+++++. ++. ..+..+..+++|++|+|++|.++...... ...+++|++|+++++... ++... +.
T Consensus 30 ~~l~~L~L~~N~-i~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~----f~~l~~L~~L~L~~N~l~~~~~~~----~~ 99 (170)
T 3g39_A 30 TTTQVLYLYDNQ-ITK-LEPGVFDRLTQLTRLDLDNNQLTVLPAGV----FDKLTQLTQLSLNDNQLKSIPRGA----FD 99 (170)
T ss_dssp TTCSEEECCSSC-CCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTT----TT
T ss_pred CCCcEEEcCCCc-CCc-cChhhhcCcccCCEEECCCCCcCccChhh----ccCCCCCCEEECCCCccCEeCHHH----hc
Confidence 346666666543 211 11222345666666666666655433221 235566666666665432 22211 45
Q ss_pred cCCCCcEEEecCCcc------hhHHHHHHHhCCccc
Q 007916 223 RCKSLKVLKVNKSIS------LEQLQRLLVRAPQLE 252 (585)
Q Consensus 223 ~~~~L~~L~l~~~~~------~~~~~~~~~~~~~L~ 252 (585)
.+++|+.|++++|.. +..+...+...+.+.
T Consensus 100 ~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~ 135 (170)
T 3g39_A 100 NLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLV 135 (170)
T ss_dssp TCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGE
T ss_pred CCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCccee
Confidence 567777777777642 333455555554443
No 158
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.26 E-value=0.00013 Score=62.41 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=30.7
Q ss_pred HhCCCCCEEEcccCCCCccccccccccccCCCCcCEEEeccCCCC-CChHHHHHHHhcCCCCcEEEecCCc
Q 007916 167 THCKNLTELDIQENGIEDSSGSWLSCFPESFTSLEVLNFANLTSE-VNTDALERLVSRCKSLKVLKVNKSI 236 (585)
Q Consensus 167 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~l~~~~ 236 (585)
..+++|++|+|++|.++..+.. ....+++|+.|+++++... ++.. .+..+++|+.|++++|.
T Consensus 54 ~~l~~L~~L~Ls~N~l~~i~~~----~~~~l~~L~~L~L~~N~l~~l~~~----~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 54 DHLVNLQQLYFNSNKLTAIPTG----VFDKLTQLTQLDLNDNHLKSIPRG----AFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSC
T ss_pred cCCcCCCEEECCCCCCCccChh----HhCCcchhhEEECCCCccceeCHH----HhccccCCCEEEeCCCC
Confidence 3555666666666555443221 1134555666666555322 2211 14455666666666654
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.24 E-value=2.4e-05 Score=76.86 Aligned_cols=85 Identities=9% Similarity=0.205 Sum_probs=41.6
Q ss_pred HhcCCCCcEEEcccCCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcC-c
Q 007916 442 VKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKY-E 520 (585)
Q Consensus 442 ~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l-~ 520 (585)
+.+|++|+.+.+...++.-+-.++. .|.+|+.+.+..+ ++..+-. .+.+| +|+.|.+.+|...... ...+..+ .
T Consensus 296 F~~c~~L~~l~l~~~i~~I~~~aF~-~c~~L~~l~lp~~-l~~I~~~-aF~~~-~L~~l~l~~n~~~~l~-~~~F~~~~~ 370 (401)
T 4fdw_A 296 LEGCPKLARFEIPESIRILGQGLLG-GNRKVTQLTIPAN-VTQINFS-AFNNT-GIKEVKVEGTTPPQVF-EKVWYGFPD 370 (401)
T ss_dssp TTTCTTCCEECCCTTCCEECTTTTT-TCCSCCEEEECTT-CCEECTT-SSSSS-CCCEEEECCSSCCBCC-CSSCCCSCT
T ss_pred hhCCccCCeEEeCCceEEEhhhhhc-CCCCccEEEECcc-ccEEcHH-hCCCC-CCCEEEEcCCCCcccc-cccccCCCC
Confidence 3456666666665422211111111 5667777777543 2111111 23567 7888888777652110 1123344 3
Q ss_pred CCcEEEccccc
Q 007916 521 SMRSLWMSACN 531 (585)
Q Consensus 521 ~L~~L~l~~~~ 531 (585)
+++.|.+-.+.
T Consensus 371 ~l~~l~vp~~~ 381 (401)
T 4fdw_A 371 DITVIRVPAES 381 (401)
T ss_dssp TCCEEEECGGG
T ss_pred CccEEEeCHHH
Confidence 66777776654
No 160
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.24 E-value=9.8e-05 Score=74.48 Aligned_cols=41 Identities=20% Similarity=0.263 Sum_probs=37.0
Q ss_pred hhhhhcCCCHHHHHHHHhccCChhHHHHHHHHhHHHHHHHhh
Q 007916 16 ELAVTASFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAERW 57 (585)
Q Consensus 16 ~~~~i~~LP~eil~~If~~L~~~~d~~~~~~Vck~w~~~~~~ 57 (585)
+.+.|..||+|++.+||+||+ .+++.++++|||+|++++..
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQ-FEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSC-HHHHHHHHTTCHHHHHHHTT
T ss_pred ccCChHHCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHcC
Confidence 457799999999999999995 89999999999999998753
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.13 E-value=3.9e-05 Score=75.61 Aligned_cols=78 Identities=13% Similarity=0.269 Sum_probs=37.3
Q ss_pred HhcCCCCcEEEcccC---CChhHHHHHhhcCccccceecccc--cCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHH
Q 007916 442 VKTCSKLQRLSVSGL---LTDLTFEYIGKYAKNLETLSVAFA--GRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGL 516 (585)
Q Consensus 442 ~~~~~~L~~L~l~~~---~~~~~~~~l~~~~~~L~~L~l~~~--~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~ 516 (585)
+.+|.+|+.+.+... +.+..+ ..|.+|+.+.+..+ .|.+. .+.+|++|+.+++.++.. ....+
T Consensus 307 F~~c~~L~~i~lp~~v~~I~~~aF----~~C~~L~~i~ip~sv~~I~~~----aF~~C~~L~~i~~~~~~~----~~~~~ 374 (394)
T 4gt6_A 307 FAGCISLKSIDIPEGITQILDDAF----AGCEQLERIAIPSSVTKIPES----AFSNCTALNNIEYSGSRS----QWNAI 374 (394)
T ss_dssp TTTCTTCCEEECCTTCCEECTTTT----TTCTTCCEEEECTTCCBCCGG----GGTTCTTCCEEEESSCHH----HHHTC
T ss_pred ecCCCCcCEEEeCCcccEehHhHh----hCCCCCCEEEECcccCEEhHh----HhhCCCCCCEEEECCcee----ehhhh
Confidence 456677777777542 222222 15677777777543 23222 235677777777766532 11234
Q ss_pred hcCcCCcEEEccccc
Q 007916 517 EKYESMRSLWMSACN 531 (585)
Q Consensus 517 ~~l~~L~~L~l~~~~ 531 (585)
..+..|+.+.+..+.
T Consensus 375 ~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 375 STDSGLQNLPVAPGS 389 (394)
T ss_dssp BCCCCC---------
T ss_pred hccCCCCEEEeCCCC
Confidence 556677777666544
No 162
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.97 E-value=0.00025 Score=70.83 Aligned_cols=40 Identities=30% Similarity=0.659 Sum_probs=36.8
Q ss_pred hhhhhcCCCHH----HHHHHHhccCChhHHHHHHHHhHHHHHHHh
Q 007916 16 ELAVTASFPDE----VLEIVLSLLTSHRDRSSVSLVCKDWYRAER 56 (585)
Q Consensus 16 ~~~~i~~LP~e----il~~If~~L~~~~d~~~~~~Vck~w~~~~~ 56 (585)
+.+.+..||+| |+.+||+||+ .+++.++++|||+|+.++.
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~ 50 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLD-AKSLCAAELVCKEWYRVTS 50 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCC-HHHHHHHHHHCHHHHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhc
Confidence 45789999999 9999999995 9999999999999999876
No 163
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.84 E-value=0.00045 Score=69.16 Aligned_cols=40 Identities=23% Similarity=0.388 Sum_probs=36.8
Q ss_pred hhhhhcCCCHHHHHHHHhccCChhHHHHHHHHhHHHHHHHh
Q 007916 16 ELAVTASFPDEVLEIVLSLLTSHRDRSSVSLVCKDWYRAER 56 (585)
Q Consensus 16 ~~~~i~~LP~eil~~If~~L~~~~d~~~~~~Vck~w~~~~~ 56 (585)
..+.+..||+|++.+||+||+ .+|+.++++|||+|+.++.
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~-~~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLE-PKDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSC-HHHHHHHTTSCHHHHHHHT
T ss_pred cCChhHHCCHHHHHHHHHhCC-HHHHHHHHHHhHHHHhhcC
Confidence 457899999999999999995 9999999999999999875
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.50 E-value=0.00027 Score=68.18 Aligned_cols=62 Identities=13% Similarity=0.151 Sum_probs=28.4
Q ss_pred cCccccceecccccCChHHHHHHHhcCCCccEEEecCCCCChHHHHHHHhcCcCCcEEEcccccc
Q 007916 468 YAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNV 532 (585)
Q Consensus 468 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i 532 (585)
.+++|+.|+|++|.++... ...+..+++|+.|+|++|.++... +..+..++ |+.|+|.+|++
T Consensus 54 ~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 54 GLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNALESLS-WKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp SCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCCSCCC-STTTCSCC-CCEEECCSSCC
T ss_pred cccCCCEEECCCCccceeC-HHHhcCCcCCCEEeCCCCccceeC-HHHcccCC-ceEEEeeCCCc
Confidence 4555555555555543311 112344556666666666553210 01122222 66666665554
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.44 E-value=0.0002 Score=70.52 Aligned_cols=57 Identities=12% Similarity=0.275 Sum_probs=28.5
Q ss_pred HhcCCCCcEEEccc---CCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCC
Q 007916 442 VKTCSKLQRLSVSG---LLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCP 506 (585)
Q Consensus 442 ~~~~~~L~~L~l~~---~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~ 506 (585)
+.+|.+|+.+.+.. .+.+..+. .|.+|+.+.+..+... . ..+..|.+|+.+.+..+.
T Consensus 330 F~~C~~L~~i~ip~sv~~I~~~aF~----~C~~L~~i~~~~~~~~---~-~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 330 FAGCEQLERIAIPSSVTKIPESAFS----NCTALNNIEYSGSRSQ---W-NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TTTCTTCCEEEECTTCCBCCGGGGT----TCTTCCEEEESSCHHH---H-HTCBCCCCC---------
T ss_pred hhCCCCCCEEEECcccCEEhHhHhh----CCCCCCEEEECCceee---h-hhhhccCCCCEEEeCCCC
Confidence 45677788877755 23333222 6788888887765431 1 223567788887776554
No 166
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.07 E-value=0.002 Score=62.04 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=29.2
Q ss_pred CCCCcEEEecc-cccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCc
Q 007916 118 YPFLEELRLKR-MAVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIED 184 (585)
Q Consensus 118 ~~~L~~L~l~~-~~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 184 (585)
..+|+.|+|++ +.++......+. .+++|+.|+|+++. ++. ..+..+..+++|++|+|++|.++.
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~-~l~~L~~L~l~~N~-l~~-~~~~~~~~l~~L~~L~l~~N~l~~ 94 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLR-GLGELRNLTIVKSG-LRF-VAPDAFHFTPRLSRLNLSFNALES 94 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSC-SCCCCSEEECCSSC-CCE-ECTTGGGSCSCCCEEECCSSCCSC
T ss_pred CCCeeEEEccCCCCCCCcChhHhc-cccCCCEEECCCCc-cce-eCHHHhcCCcCCCEEeCCCCccce
Confidence 34566666654 544332111121 24556666665543 321 112223455556666666555544
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=84.01 E-value=0.15 Score=49.45 Aligned_cols=83 Identities=11% Similarity=0.205 Sum_probs=44.9
Q ss_pred HhcCCCCcEEEcccCCChhHHHHHhhcCccccceecccccCChHHHHHHHhcCCCccEEEecCCCC--ChHHHHHHHhcC
Q 007916 442 VKTCSKLQRLSVSGLLTDLTFEYIGKYAKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPF--GNEALLSGLEKY 519 (585)
Q Consensus 442 ~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~--~~~~l~~~~~~l 519 (585)
..+|..|+.+.+...+..-+..++ ..|.+|+.+.+..+.++..+-. .+.+|.+|+.+.+..+-. .+ ..+.+|
T Consensus 259 F~~~~~l~~i~l~~~i~~i~~~aF-~~c~~L~~i~l~~~~i~~I~~~-aF~~c~~L~~i~lp~~l~~I~~----~aF~~C 332 (379)
T 4h09_A 259 LQNCTALKTLNFYAKVKTVPYLLC-SGCSNLTKVVMDNSAIETLEPR-VFMDCVKLSSVTLPTALKTIQV----YAFKNC 332 (379)
T ss_dssp TTTCTTCCEEEECCCCSEECTTTT-TTCTTCCEEEECCTTCCEECTT-TTTTCTTCCEEECCTTCCEECT----TTTTTC
T ss_pred cceeehhccccccccceecccccc-ccccccccccccccccceehhh-hhcCCCCCCEEEcCccccEEHH----HHhhCC
Confidence 345667777777542222111111 2677777777766554321111 246677888887754421 22 234677
Q ss_pred cCCcEEEcccc
Q 007916 520 ESMRSLWMSAC 530 (585)
Q Consensus 520 ~~L~~L~l~~~ 530 (585)
++|+++.+..+
T Consensus 333 ~~L~~i~ip~~ 343 (379)
T 4h09_A 333 KALSTISYPKS 343 (379)
T ss_dssp TTCCCCCCCTT
T ss_pred CCCCEEEECCc
Confidence 77777776543
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=78.88 E-value=0.67 Score=36.64 Aligned_cols=36 Identities=11% Similarity=0.079 Sum_probs=21.4
Q ss_pred CccEEEecCCCCChHHHHHHHhcCcCCcEEEcccccc
Q 007916 496 KLRKLEIRDCPFGNEALLSGLEKYESMRSLWMSACNV 532 (585)
Q Consensus 496 ~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~i 532 (585)
+|+.|+|++|.++... ...+..+++|+.|+|++|++
T Consensus 32 ~l~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALP-PGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCC-TTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccC-hhhhhhccccCEEEecCCCe
Confidence 5777777777663211 13345667777777777763
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=76.43 E-value=1.3 Score=42.53 Aligned_cols=124 Identities=9% Similarity=0.150 Sum_probs=73.9
Q ss_pred hCCCCcEEEeccc--ccChHHHHHHHhhCCCccEEEecCCCCCCHHHHHHHHHhCCCCCEEEcccCCCCccccccccccc
Q 007916 117 KYPFLEELRLKRM--AVSDESLEFLASNFPNFKLLSLLSCDGFSTDGLAAIATHCKNLTELDIQENGIEDSSGSWLSCFP 194 (585)
Q Consensus 117 ~~~~L~~L~l~~~--~l~~~~l~~i~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 194 (585)
.+.+++.+.+... .+.+ .....+..|+.+.+... ++..+ .....+|.+|+.+.+... +...+. ...
T Consensus 215 ~~~~l~~i~~~~~~~~i~~----~~f~~~~~L~~i~lp~~--v~~I~-~~aF~~~~~l~~i~l~~~-i~~i~~----~aF 282 (379)
T 4h09_A 215 YGKNLKKITITSGVTTLGD----GAFYGMKALDEIAIPKN--VTSIG-SFLLQNCTALKTLNFYAK-VKTVPY----LLC 282 (379)
T ss_dssp TCSSCSEEECCTTCCEECT----TTTTTCSSCCEEEECTT--CCEEC-TTTTTTCTTCCEEEECCC-CSEECT----TTT
T ss_pred cccccceeeeccceeEEcc----ccccCCccceEEEcCCC--ccEeC-ccccceeehhcccccccc-ceeccc----ccc
Confidence 5677888888654 2222 11223677888888652 22111 122347888998888543 222221 223
Q ss_pred cCCCCcCEEEeccCCC-CCChHHHHHHHhcCCCCcEEEecCCcchhHH-HHHHHhCCccccccCcc
Q 007916 195 ESFTSLEVLNFANLTS-EVNTDALERLVSRCKSLKVLKVNKSISLEQL-QRLLVRAPQLEELGTGS 258 (585)
Q Consensus 195 ~~~~~L~~L~l~~~~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~ 258 (585)
..|.+|+.+.+..... .+.+.. +..|.+|+.+.|..+. ..+ ...+.+|.+|+.+.+..
T Consensus 283 ~~c~~L~~i~l~~~~i~~I~~~a----F~~c~~L~~i~lp~~l--~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIETLEPRV----FMDCVKLSSVTLPTAL--KTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTCTTCCEEEECCTTCCEECTTT----TTTCTTCCEEECCTTC--CEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccccccccceehhhh----hcCCCCCCEEEcCccc--cEEHHHHhhCCCCCCEEEECC
Confidence 5788899998865432 244432 6778899999986542 222 24567788899888754
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=70.89 E-value=1.4 Score=34.78 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=27.0
Q ss_pred CccccceecccccCChHHHHHHHhcCCCccEEEecCCCC
Q 007916 469 AKNLETLSVAFAGRSDRGMQCVLEGCPKLRKLEIRDCPF 507 (585)
Q Consensus 469 ~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~~~~ 507 (585)
.++|+.|+|++|.++...- ..+..+++|+.|+|.+|++
T Consensus 30 p~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 30 PVDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CTTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCC
T ss_pred CcCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCe
Confidence 4468888888887654211 1346788999999999987
Done!