Query 007917
Match_columns 585
No_of_seqs 238 out of 1364
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 17:04:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007917.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007917hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02573 pyruvate decarboxylas 100.0 9E-101 2E-105 840.9 62.4 571 15-585 3-578 (578)
2 COG0028 IlvB Thiamine pyrophos 100.0 7E-100 1E-104 818.7 47.7 513 26-562 1-534 (550)
3 TIGR01504 glyox_carbo_lig glyo 100.0 4.7E-95 1E-99 798.2 48.5 521 26-565 2-561 (588)
4 PRK08979 acetolactate synthase 100.0 1.2E-94 2.6E-99 794.9 47.0 523 26-565 3-552 (572)
5 COG3961 Pyruvate decarboxylase 100.0 1.4E-93 3.1E-98 720.4 49.7 547 25-580 2-556 (557)
6 TIGR03393 indolpyr_decarb indo 100.0 8.2E-93 1.8E-97 775.8 58.4 528 27-569 1-537 (539)
7 PRK06965 acetolactate synthase 100.0 3.3E-94 7.2E-99 793.0 46.2 536 7-567 7-570 (587)
8 PRK07979 acetolactate synthase 100.0 5.9E-94 1.3E-98 790.5 47.5 525 25-565 2-554 (574)
9 PRK09107 acetolactate synthase 100.0 1.3E-93 2.8E-98 787.9 48.2 521 25-564 9-559 (595)
10 PRK06466 acetolactate synthase 100.0 1.8E-93 3.8E-98 786.7 47.2 521 25-565 2-554 (574)
11 TIGR03394 indol_phenyl_DC indo 100.0 3.4E-92 7.4E-97 767.3 55.4 522 28-571 1-533 (535)
12 PRK07282 acetolactate synthase 100.0 1.7E-93 3.6E-98 784.1 44.9 519 25-565 8-547 (566)
13 PRK06048 acetolactate synthase 100.0 4.7E-93 1E-97 781.3 48.3 522 21-565 2-544 (561)
14 PRK06725 acetolactate synthase 100.0 4.2E-93 9.1E-98 780.0 47.8 521 24-565 12-551 (570)
15 PRK07418 acetolactate synthase 100.0 7.8E-93 1.7E-97 786.3 50.0 520 23-564 15-564 (616)
16 PRK11269 glyoxylate carboligas 100.0 5.6E-93 1.2E-97 784.5 47.6 519 26-564 3-561 (591)
17 PRK07789 acetolactate synthase 100.0 9.9E-93 2.2E-97 784.9 49.7 540 6-564 8-581 (612)
18 PRK08322 acetolactate synthase 100.0 1.8E-92 3.9E-97 776.8 50.6 523 27-574 1-543 (547)
19 PRK08978 acetolactate synthase 100.0 1E-92 2.2E-97 777.8 46.3 514 27-566 1-532 (548)
20 PRK08527 acetolactate synthase 100.0 1.2E-92 2.6E-97 778.3 46.1 520 26-566 2-545 (563)
21 PRK06456 acetolactate synthase 100.0 2E-92 4.4E-97 779.2 46.5 522 27-565 2-551 (572)
22 TIGR03457 sulphoacet_xsc sulfo 100.0 5.2E-92 1.1E-96 775.7 48.9 525 26-572 1-570 (579)
23 PLN02470 acetolactate synthase 100.0 3.8E-92 8.3E-97 777.0 47.1 522 25-566 11-564 (585)
24 PRK08155 acetolactate synthase 100.0 7.6E-92 1.7E-96 772.8 49.4 519 26-566 12-550 (564)
25 PRK08617 acetolactate synthase 100.0 1.2E-91 2.6E-96 769.9 48.1 521 25-569 3-546 (552)
26 TIGR02418 acolac_catab acetola 100.0 1.1E-91 2.3E-96 768.2 46.9 515 29-567 1-538 (539)
27 PRK07710 acetolactate synthase 100.0 1.2E-91 2.6E-96 771.6 46.9 520 26-566 15-555 (571)
28 KOG1184 Thiamine pyrophosphate 100.0 1.6E-90 3.4E-95 695.0 50.5 556 25-581 2-561 (561)
29 CHL00099 ilvB acetohydroxyacid 100.0 2.1E-91 4.6E-96 770.4 48.7 522 26-565 9-561 (585)
30 PRK08273 thiamine pyrophosphat 100.0 3E-91 6.6E-96 770.9 48.1 512 27-562 3-549 (597)
31 PRK08611 pyruvate oxidase; Pro 100.0 5.3E-91 1.1E-95 765.9 47.1 512 26-564 3-535 (576)
32 PRK06457 pyruvate dehydrogenas 100.0 4.7E-91 1E-95 763.5 45.7 514 27-576 2-536 (549)
33 PRK09124 pyruvate dehydrogenas 100.0 1.5E-90 3.2E-95 764.1 49.8 512 26-564 2-535 (574)
34 TIGR00118 acolac_lg acetolacta 100.0 9.1E-91 2E-95 763.9 46.5 521 27-567 1-544 (558)
35 PRK06882 acetolactate synthase 100.0 1.2E-90 2.7E-95 765.4 47.2 523 27-566 4-553 (574)
36 PRK08199 thiamine pyrophosphat 100.0 9.9E-91 2.2E-95 762.9 45.4 515 25-565 6-544 (557)
37 PRK05858 hypothetical protein; 100.0 2.4E-90 5.3E-95 756.8 47.7 512 24-565 2-536 (542)
38 PRK06276 acetolactate synthase 100.0 2.1E-90 4.6E-95 763.3 46.2 516 27-563 1-547 (586)
39 PRK06546 pyruvate dehydrogenas 100.0 4E-90 8.8E-95 758.4 48.1 510 26-563 2-534 (578)
40 TIGR02720 pyruv_oxi_spxB pyruv 100.0 5.5E-90 1.2E-94 757.7 48.1 515 29-565 1-538 (575)
41 PRK06154 hypothetical protein; 100.0 1.1E-89 2.3E-94 752.4 49.5 512 23-562 16-558 (565)
42 PRK07525 sulfoacetaldehyde ace 100.0 8.9E-90 1.9E-94 758.7 48.6 521 25-567 4-570 (588)
43 PRK07524 hypothetical protein; 100.0 7.7E-89 1.7E-93 745.0 47.3 506 27-561 2-531 (535)
44 PRK06112 acetolactate synthase 100.0 2E-88 4.3E-93 747.8 50.7 531 15-566 2-567 (578)
45 PRK07064 hypothetical protein; 100.0 6.6E-89 1.4E-93 748.1 44.7 505 26-561 2-530 (544)
46 TIGR03254 oxalate_oxc oxalyl-C 100.0 1.7E-88 3.6E-93 744.8 47.5 515 26-566 2-545 (554)
47 PRK09259 putative oxalyl-CoA d 100.0 6.8E-88 1.5E-92 741.6 45.8 515 26-565 9-552 (569)
48 PRK08266 hypothetical protein; 100.0 6.6E-88 1.4E-92 739.3 45.4 506 26-565 3-531 (542)
49 PRK08327 acetolactate synthase 100.0 6.6E-87 1.4E-91 732.4 43.5 512 26-560 6-568 (569)
50 PRK07586 hypothetical protein; 100.0 1.6E-85 3.5E-90 715.9 49.4 488 27-558 1-514 (514)
51 PRK12474 hypothetical protein; 100.0 1.9E-85 4.1E-90 714.4 48.9 485 25-558 3-518 (518)
52 PRK07092 benzoylformate decarb 100.0 1.5E-85 3.2E-90 717.8 47.6 504 24-559 9-530 (530)
53 PRK07449 2-succinyl-5-enolpyru 100.0 9.6E-86 2.1E-90 726.2 36.3 526 27-576 9-566 (568)
54 KOG1185 Thiamine pyrophosphate 100.0 9.4E-85 2E-89 647.1 38.6 517 24-565 11-566 (571)
55 KOG4166 Thiamine pyrophosphate 100.0 1.3E-84 2.9E-89 633.8 27.8 523 26-567 90-655 (675)
56 PLN02980 2-oxoglutarate decarb 100.0 1E-76 2.2E-81 711.1 40.1 530 27-576 301-906 (1655)
57 COG3960 Glyoxylate carboligase 100.0 2.3E-70 5E-75 520.3 23.4 519 26-564 3-561 (592)
58 COG3962 Acetolactate synthase 100.0 1.4E-68 3E-73 527.7 32.5 527 27-566 7-582 (617)
59 TIGR00173 menD 2-succinyl-5-en 100.0 3.5E-69 7.5E-74 573.4 28.0 410 29-453 2-431 (432)
60 COG1165 MenD 2-succinyl-6-hydr 100.0 5.8E-59 1.3E-63 475.4 31.1 520 27-577 8-564 (566)
61 cd07039 TPP_PYR_POX Pyrimidine 100.0 5.5E-41 1.2E-45 307.8 17.4 161 28-196 1-162 (164)
62 cd07038 TPP_PYR_PDC_IPDC_like 100.0 5.4E-39 1.2E-43 294.3 18.3 162 31-192 1-162 (162)
63 cd07037 TPP_PYR_MenD Pyrimidin 100.0 3.4E-39 7.3E-44 293.3 16.3 153 32-192 2-162 (162)
64 TIGR03336 IOR_alpha indolepyru 100.0 3.8E-35 8.2E-40 322.8 43.2 484 25-562 3-533 (595)
65 PF02776 TPP_enzyme_N: Thiamin 100.0 9.7E-38 2.1E-42 290.3 14.1 164 27-197 1-166 (172)
66 TIGR03297 Ppyr-DeCO2ase phosph 100.0 7.7E-34 1.7E-38 290.3 30.7 327 41-564 1-341 (361)
67 cd02013 TPP_Xsc_like Thiamine 100.0 9.6E-35 2.1E-39 275.4 15.9 179 389-572 2-192 (196)
68 cd02006 TPP_Gcl Thiamine pyrop 100.0 4.4E-34 9.4E-39 272.6 14.3 172 388-564 5-199 (202)
69 cd02005 TPP_PDC_IPDC Thiamine 100.0 8.6E-33 1.9E-37 258.9 18.8 176 390-567 1-182 (183)
70 cd02010 TPP_ALS Thiamine pyrop 100.0 9.2E-33 2E-37 257.3 16.1 165 393-564 1-175 (177)
71 cd07035 TPP_PYR_POX_like Pyrim 100.0 1.6E-32 3.4E-37 251.4 16.3 153 31-192 1-155 (155)
72 cd02003 TPP_IolD Thiamine pyro 100.0 5.6E-33 1.2E-37 265.2 11.5 172 394-572 2-197 (205)
73 cd02015 TPP_AHAS Thiamine pyro 100.0 2E-32 4.3E-37 258.0 15.0 168 391-565 1-180 (186)
74 cd02009 TPP_SHCHC_synthase Thi 100.0 9E-32 1.9E-36 250.5 15.1 160 392-559 2-175 (175)
75 cd02014 TPP_POX Thiamine pyrop 100.0 3.4E-31 7.3E-36 247.7 16.4 168 390-564 1-178 (178)
76 cd02004 TPP_BZL_OCoD_HPCL Thia 100.0 5.6E-31 1.2E-35 245.1 15.9 160 393-559 1-172 (172)
77 cd07034 TPP_PYR_PFOR_IOR-alpha 100.0 2.4E-30 5.1E-35 238.2 17.1 154 29-190 1-158 (160)
78 PRK06163 hypothetical protein; 100.0 1.2E-29 2.7E-34 239.2 17.6 161 387-563 9-177 (202)
79 cd02002 TPP_BFDC Thiamine pyro 100.0 1.7E-29 3.6E-34 236.8 14.0 160 391-558 1-178 (178)
80 cd02001 TPP_ComE_PpyrDC Thiami 100.0 1.7E-28 3.6E-33 223.5 16.8 151 394-561 2-157 (157)
81 cd06586 TPP_enzyme_PYR Pyrimid 100.0 1.7E-28 3.7E-33 224.5 16.4 154 31-192 1-154 (154)
82 TIGR03846 sulfopy_beta sulfopy 100.0 6E-28 1.3E-32 224.8 16.7 154 394-564 2-161 (181)
83 cd03371 TPP_PpyrDC Thiamine py 100.0 8.3E-28 1.8E-32 225.5 16.8 157 394-564 2-168 (188)
84 PF02775 TPP_enzyme_C: Thiamin 100.0 3.3E-28 7.2E-33 222.0 11.3 137 413-556 1-153 (153)
85 cd02008 TPP_IOR_alpha Thiamine 99.9 3.2E-27 6.9E-32 220.7 16.3 158 388-559 7-177 (178)
86 cd03375 TPP_OGFOR Thiamine pyr 99.9 1.7E-26 3.6E-31 218.0 16.5 146 404-564 24-189 (193)
87 cd03376 TPP_PFOR_porB_like Thi 99.9 5.5E-26 1.2E-30 220.3 18.4 165 388-561 8-202 (235)
88 cd00568 TPP_enzymes Thiamine p 99.9 2.1E-26 4.6E-31 213.8 14.6 156 396-558 2-168 (168)
89 cd03372 TPP_ComE Thiamine pyro 99.9 4.9E-26 1.1E-30 212.2 16.4 153 394-564 2-160 (179)
90 cd02018 TPP_PFOR Thiamine pyro 99.9 4.8E-26 1E-30 221.2 16.8 169 388-562 8-206 (237)
91 PRK09628 oorB 2-oxoglutarate-a 99.9 8E-26 1.7E-30 222.5 17.5 159 389-562 24-204 (277)
92 TIGR03845 sulfopyru_alph sulfo 99.9 5.5E-26 1.2E-30 205.8 13.7 152 31-194 2-156 (157)
93 PRK11867 2-oxoglutarate ferred 99.9 9.5E-25 2.1E-29 216.4 17.6 171 389-575 21-219 (286)
94 COG4231 Indolepyruvate ferredo 99.9 2.8E-22 6.1E-27 209.1 33.6 480 24-556 13-551 (640)
95 PRK05778 2-oxoglutarate ferred 99.9 1.4E-24 3.1E-29 215.9 15.9 155 391-560 28-204 (301)
96 PRK11869 2-oxoacid ferredoxin 99.9 5.9E-24 1.3E-28 208.7 15.2 158 390-562 13-196 (280)
97 PF00205 TPP_enzyme_M: Thiamin 99.9 1.1E-23 2.5E-28 188.3 12.7 132 225-358 1-137 (137)
98 PRK11866 2-oxoacid ferredoxin 99.9 8.6E-23 1.9E-27 200.7 17.1 161 388-563 10-196 (279)
99 TIGR02177 PorB_KorB 2-oxoacid: 99.9 6.1E-23 1.3E-27 202.2 14.3 157 391-563 7-190 (287)
100 PRK13030 2-oxoacid ferredoxin 99.9 5.8E-20 1.3E-24 209.4 36.1 480 21-554 14-598 (1159)
101 PRK09193 indolepyruvate ferred 99.9 1.7E-19 3.8E-24 204.8 36.3 485 19-554 20-612 (1165)
102 PRK13029 2-oxoacid ferredoxin 99.8 2.3E-17 5E-22 187.1 37.6 483 20-554 24-626 (1186)
103 cd02012 TPP_TK Thiamine pyroph 99.7 2.7E-17 5.8E-22 162.7 11.7 120 436-565 102-233 (255)
104 cd02000 TPP_E1_PDC_ADC_BCADC T 99.7 3.4E-16 7.4E-21 157.8 11.3 115 436-560 101-229 (293)
105 TIGR03181 PDH_E1_alph_x pyruva 99.6 4.1E-16 8.9E-21 159.9 10.5 113 436-560 119-247 (341)
106 CHL00149 odpA pyruvate dehydro 99.6 1.1E-15 2.4E-20 156.1 11.4 112 436-560 125-260 (341)
107 TIGR03182 PDH_E1_alph_y pyruva 99.6 7.6E-16 1.6E-20 156.3 9.9 115 436-560 107-235 (315)
108 PRK05899 transketolase; Review 99.6 5.9E-15 1.3E-19 164.1 11.6 113 436-560 115-249 (624)
109 PRK11865 pyruvate ferredoxin o 99.5 1.5E-13 3.2E-18 136.1 17.0 165 387-562 20-214 (299)
110 PLN02374 pyruvate dehydrogenas 99.5 1.3E-13 2.8E-18 144.0 12.0 113 435-560 190-326 (433)
111 PRK11864 2-ketoisovalerate fer 99.5 1.1E-12 2.3E-17 129.9 16.2 164 389-562 22-210 (300)
112 PRK00945 acetyl-CoA decarbonyl 99.4 3.5E-13 7.6E-18 121.9 9.2 130 226-360 25-166 (171)
113 cd02007 TPP_DXS Thiamine pyrop 99.4 6.7E-13 1.4E-17 125.3 11.0 108 436-561 72-192 (195)
114 TIGR00315 cdhB CO dehydrogenas 99.4 3.7E-13 8E-18 121.0 8.3 130 226-360 18-158 (162)
115 PRK05444 1-deoxy-D-xylulose-5- 99.3 7E-12 1.5E-16 138.3 11.8 119 436-563 114-246 (580)
116 TIGR03710 OAFO_sf 2-oxoacid:ac 99.2 1.9E-09 4.2E-14 118.0 23.2 170 19-196 188-364 (562)
117 PRK07119 2-ketoisovalerate fer 99.2 5.2E-09 1.1E-13 107.8 24.5 161 25-197 5-176 (352)
118 PRK08659 2-oxoglutarate ferred 99.1 3.3E-09 7.2E-14 110.2 17.6 165 25-197 5-176 (376)
119 PRK12571 1-deoxy-D-xylulose-5- 99.1 7E-10 1.5E-14 123.1 12.5 120 437-563 121-287 (641)
120 PLN02790 transketolase 99.1 6.7E-10 1.5E-14 123.6 12.2 115 435-560 101-239 (654)
121 COG1013 PorB Pyruvate:ferredox 99.1 2.9E-09 6.2E-14 106.1 15.3 162 389-562 19-207 (294)
122 PRK09627 oorA 2-oxoglutarate-a 99.1 3.6E-09 7.7E-14 109.6 16.1 165 25-197 4-175 (375)
123 PRK12754 transketolase; Review 99.0 2.2E-09 4.7E-14 118.7 12.1 114 436-560 111-247 (663)
124 PTZ00089 transketolase; Provis 99.0 2.1E-09 4.6E-14 119.8 12.0 114 436-560 113-250 (661)
125 PF00456 Transketolase_N: Tran 99.0 7.4E-10 1.6E-14 112.4 7.4 114 436-560 108-244 (332)
126 TIGR00232 tktlase_bact transke 99.0 2.5E-09 5.4E-14 119.1 12.2 114 436-560 107-243 (653)
127 PRK12753 transketolase; Review 99.0 2.4E-09 5.2E-14 119.2 11.2 114 436-560 111-247 (663)
128 PRK12315 1-deoxy-D-xylulose-5- 98.9 4.3E-09 9.3E-14 115.8 12.2 118 437-563 111-247 (581)
129 COG4032 Predicted thiamine-pyr 98.9 8.3E-09 1.8E-13 87.5 10.6 162 25-194 2-165 (172)
130 PRK08366 vorA 2-ketoisovalerat 98.9 3.1E-08 6.8E-13 103.0 15.7 156 25-192 4-166 (390)
131 PRK09622 porA pyruvate flavodo 98.9 4.2E-08 9.1E-13 103.2 16.2 161 24-194 10-177 (407)
132 PRK08367 porA pyruvate ferredo 98.9 4.6E-08 1E-12 102.0 15.6 159 25-193 5-170 (394)
133 COG1071 AcoA Pyruvate/2-oxoglu 98.9 1.3E-08 2.9E-13 102.6 10.8 115 436-560 133-262 (358)
134 PF00676 E1_dh: Dehydrogenase 98.9 4E-09 8.7E-14 106.4 6.9 113 438-560 100-226 (300)
135 cd02017 TPP_E1_EcPDC_like Thia 98.8 1.9E-08 4.1E-13 102.5 11.4 114 437-561 116-319 (386)
136 PF01855 POR_N: Pyruvate flavo 98.8 3.1E-08 6.6E-13 95.7 11.0 152 35-195 1-157 (230)
137 COG3959 Transketolase, N-termi 98.8 4.6E-08 9.9E-13 90.5 10.9 112 437-559 117-241 (243)
138 PLN02269 Pyruvate dehydrogenas 98.8 2.6E-08 5.6E-13 102.5 9.7 112 436-560 135-260 (362)
139 PF13292 DXP_synthase_N: 1-deo 98.8 6.2E-08 1.3E-12 92.9 11.0 159 391-558 44-270 (270)
140 COG0021 TktA Transketolase [Ca 98.7 6E-08 1.3E-12 102.8 11.7 112 437-559 114-248 (663)
141 cd02016 TPP_E1_OGDC_like Thiam 98.7 5.8E-08 1.3E-12 94.7 8.6 117 436-561 110-248 (265)
142 TIGR00204 dxs 1-deoxy-D-xylulo 98.7 9.9E-08 2.1E-12 105.7 11.4 119 437-563 109-278 (617)
143 PLN02234 1-deoxy-D-xylulose-5- 98.7 1.4E-07 3.1E-12 103.3 12.4 126 436-567 174-329 (641)
144 cd02011 TPP_PK Thiamine pyroph 98.6 1.6E-07 3.5E-12 89.3 10.5 99 436-544 59-170 (227)
145 TIGR03186 AKGDH_not_PDH alpha- 98.5 5.4E-07 1.2E-11 101.3 11.8 114 436-560 186-389 (889)
146 cd03377 TPP_PFOR_PNO Thiamine 98.5 4.2E-06 9.2E-11 84.8 16.4 170 387-562 8-270 (365)
147 KOG0523 Transketolase [Carbohy 98.4 1.4E-06 3E-11 91.6 11.3 115 434-559 113-241 (632)
148 COG0674 PorA Pyruvate:ferredox 98.4 7.8E-06 1.7E-10 84.7 16.2 157 25-194 4-167 (365)
149 PLN02582 1-deoxy-D-xylulose-5- 98.4 1.6E-06 3.5E-11 96.0 11.9 122 436-562 141-323 (677)
150 TIGR00759 aceE pyruvate dehydr 98.4 1.9E-06 4E-11 95.9 11.8 85 436-530 186-289 (885)
151 PLN02225 1-deoxy-D-xylulose-5- 98.4 3.4E-06 7.3E-11 92.9 12.4 167 390-562 122-367 (701)
152 PRK13012 2-oxoacid dehydrogena 98.3 3.7E-06 7.9E-11 95.1 12.5 114 436-560 200-403 (896)
153 COG1880 CdhB CO dehydrogenase/ 98.3 2.9E-06 6.4E-11 73.7 8.4 129 227-362 27-168 (170)
154 COG1154 Dxs Deoxyxylulose-5-ph 98.3 3.6E-06 7.8E-11 89.1 9.5 163 391-561 48-281 (627)
155 PRK09405 aceE pyruvate dehydro 98.2 7.3E-06 1.6E-10 92.4 12.4 114 436-560 192-395 (891)
156 PRK05261 putative phosphoketol 98.2 4.9E-06 1.1E-10 92.5 10.6 114 437-560 140-284 (785)
157 TIGR00239 2oxo_dh_E1 2-oxoglut 98.2 5.9E-06 1.3E-10 93.7 9.7 117 435-560 311-450 (929)
158 PRK09404 sucA 2-oxoglutarate d 98.1 5.8E-06 1.2E-10 94.2 8.9 113 438-560 313-449 (924)
159 KOG0225 Pyruvate dehydrogenase 97.9 2.8E-05 6E-10 76.1 7.1 113 436-560 162-288 (394)
160 TIGR02176 pyruv_ox_red pyruvat 97.9 0.00039 8.4E-09 82.5 17.1 155 26-191 3-168 (1165)
161 TIGR02176 pyruv_ox_red pyruvat 97.7 0.00081 1.8E-08 79.8 16.1 169 387-561 807-1069(1165)
162 KOG1182 Branched chain alpha-k 97.5 8.5E-05 1.8E-09 72.0 4.0 109 439-560 193-319 (432)
163 PF02552 CO_dh: CO dehydrogena 97.3 0.00038 8.3E-09 63.1 4.9 127 224-360 23-165 (167)
164 cd07035 TPP_PYR_POX_like Pyrim 96.6 0.026 5.6E-07 51.2 11.5 102 444-557 46-154 (155)
165 cd07039 TPP_PYR_POX Pyrimidine 96.5 0.03 6.5E-07 51.4 11.1 115 430-560 39-160 (164)
166 cd06586 TPP_enzyme_PYR Pyrimid 96.5 0.027 5.9E-07 50.8 10.4 101 444-557 47-153 (154)
167 cd07033 TPP_PYR_DXS_TK_like Py 96.3 0.2 4.3E-06 45.5 15.2 148 30-192 4-156 (156)
168 PF02776 TPP_enzyme_N: Thiamin 96.3 0.04 8.8E-07 50.9 10.5 115 429-559 39-162 (172)
169 COG1029 FwdB Formylmethanofura 96.2 0.02 4.3E-07 57.2 8.3 113 220-338 64-188 (429)
170 PF09364 XFP_N: XFP N-terminal 96.0 0.011 2.5E-07 59.5 5.7 92 438-537 139-241 (379)
171 PTZ00182 3-methyl-2-oxobutanat 95.9 1.2 2.7E-05 46.2 20.5 160 22-195 30-208 (355)
172 cd07038 TPP_PYR_PDC_IPDC_like 95.5 0.13 2.8E-06 47.1 10.2 105 444-557 47-161 (162)
173 smart00861 Transket_pyr Transk 95.0 0.72 1.6E-05 42.3 13.8 113 68-192 52-166 (168)
174 PRK08611 pyruvate oxidase; Pro 94.8 0.21 4.6E-06 55.7 11.2 114 430-559 44-164 (576)
175 cd02013 TPP_Xsc_like Thiamine 94.6 0.62 1.4E-05 44.0 12.4 116 77-194 58-180 (196)
176 cd07036 TPP_PYR_E1-PDHc-beta_l 94.5 2.2 4.7E-05 39.2 15.3 149 29-192 3-167 (167)
177 PLN02470 acetolactate synthase 94.4 0.82 1.8E-05 51.1 14.8 152 390-559 12-173 (585)
178 TIGR03845 sulfopyru_alph sulfo 94.2 0.69 1.5E-05 42.0 11.2 104 442-557 44-153 (157)
179 cd02006 TPP_Gcl Thiamine pyrop 94.1 0.65 1.4E-05 44.1 11.4 116 78-194 63-195 (202)
180 PF02775 TPP_enzyme_C: Thiamin 94.1 0.099 2.1E-06 47.3 5.5 112 75-190 31-153 (153)
181 cd07037 TPP_PYR_MenD Pyrimidin 94.1 0.31 6.7E-06 44.5 8.7 113 430-558 36-162 (162)
182 PRK07710 acetolactate synthase 94.0 0.31 6.8E-06 54.3 10.4 103 444-559 65-175 (571)
183 TIGR01504 glyox_carbo_lig glyo 93.9 0.48 1E-05 53.0 11.8 105 444-560 53-165 (588)
184 cd02005 TPP_PDC_IPDC Thiamine 93.9 1.7 3.7E-05 40.6 13.7 111 79-194 57-175 (183)
185 TIGR00232 tktlase_bact transke 93.9 1.1 2.5E-05 50.5 14.6 120 64-194 395-516 (653)
186 PRK09259 putative oxalyl-CoA d 93.9 0.39 8.5E-06 53.5 10.9 116 430-559 48-171 (569)
187 cd02004 TPP_BZL_OCoD_HPCL Thia 93.8 0.36 7.8E-06 44.5 8.9 111 77-193 53-172 (172)
188 PRK07586 hypothetical protein; 93.8 0.34 7.4E-06 53.2 10.1 115 430-560 40-162 (514)
189 PRK12754 transketolase; Review 93.8 1.1 2.5E-05 50.3 14.2 119 64-194 401-522 (663)
190 PRK08322 acetolactate synthase 93.7 0.37 7.9E-06 53.5 10.3 103 444-559 50-160 (547)
191 TIGR03254 oxalate_oxc oxalyl-C 93.7 0.42 9E-06 53.1 10.7 116 430-559 41-164 (554)
192 PRK08266 hypothetical protein; 93.7 0.98 2.1E-05 50.0 13.6 117 429-559 43-168 (542)
193 PRK06466 acetolactate synthase 93.7 0.68 1.5E-05 51.7 12.3 115 429-559 42-164 (574)
194 PRK12270 kgd alpha-ketoglutara 93.5 0.36 7.8E-06 55.0 9.4 91 460-560 650-754 (1228)
195 PF02779 Transket_pyr: Transke 93.5 0.55 1.2E-05 43.6 9.5 118 67-194 49-174 (178)
196 PRK07525 sulfoacetaldehyde ace 93.4 0.46 9.9E-06 53.2 10.5 114 430-559 44-164 (588)
197 PTZ00089 transketolase; Provis 93.4 0.68 1.5E-05 52.3 11.8 116 68-194 406-523 (661)
198 PRK07979 acetolactate synthase 93.4 0.49 1.1E-05 52.8 10.6 116 429-560 42-165 (574)
199 PRK07418 acetolactate synthase 93.3 0.61 1.3E-05 52.5 11.3 114 430-559 61-182 (616)
200 PRK08617 acetolactate synthase 93.3 0.44 9.5E-06 52.9 10.0 114 430-559 43-164 (552)
201 TIGR00118 acolac_lg acetolacta 93.3 1.2 2.5E-05 49.6 13.4 114 430-559 40-161 (558)
202 PRK12753 transketolase; Review 93.2 1.9 4.1E-05 48.8 14.8 117 67-194 403-522 (663)
203 PRK06456 acetolactate synthase 93.2 0.57 1.2E-05 52.2 10.8 115 430-560 44-166 (572)
204 PRK06725 acetolactate synthase 93.2 0.56 1.2E-05 52.2 10.6 115 430-560 53-175 (570)
205 PRK06276 acetolactate synthase 93.1 0.67 1.5E-05 51.8 11.3 103 444-559 50-160 (586)
206 cd02009 TPP_SHCHC_synthase Thi 93.1 2.3 5E-05 39.3 13.1 124 66-193 42-175 (175)
207 PRK06457 pyruvate dehydrogenas 93.1 0.53 1.2E-05 52.2 10.4 114 430-559 40-160 (549)
208 PRK11269 glyoxylate carboligas 93.1 0.55 1.2E-05 52.6 10.5 115 430-559 43-165 (591)
209 PLN02790 transketolase 93.0 2.2 4.8E-05 48.2 15.2 118 64-194 391-513 (654)
210 TIGR03181 PDH_E1_alph_x pyruva 93.0 0.68 1.5E-05 47.9 10.2 98 91-194 145-247 (341)
211 cd02001 TPP_ComE_PpyrDC Thiami 92.9 3.5 7.7E-05 37.3 13.7 139 43-193 15-155 (157)
212 PRK07524 hypothetical protein; 92.9 0.74 1.6E-05 50.9 11.1 105 444-559 51-164 (535)
213 cd02010 TPP_ALS Thiamine pyrop 92.9 0.54 1.2E-05 43.7 8.5 110 80-194 56-171 (177)
214 CHL00144 odpB pyruvate dehydro 92.8 13 0.00028 38.2 20.6 152 27-192 4-174 (327)
215 PRK09107 acetolactate synthase 92.8 0.56 1.2E-05 52.5 9.9 116 429-560 49-172 (595)
216 PRK08199 thiamine pyrophosphat 92.8 0.6 1.3E-05 51.9 10.2 103 444-559 58-168 (557)
217 PRK06882 acetolactate synthase 92.7 0.67 1.4E-05 51.7 10.5 114 430-559 43-164 (574)
218 PRK08979 acetolactate synthase 92.7 0.68 1.5E-05 51.6 10.5 115 430-560 43-165 (572)
219 PRK08978 acetolactate synthase 92.7 0.57 1.2E-05 51.9 9.8 104 444-560 50-161 (548)
220 PRK07064 hypothetical protein; 92.6 0.98 2.1E-05 50.0 11.6 116 430-559 42-166 (544)
221 TIGR03457 sulphoacet_xsc sulfo 92.6 0.74 1.6E-05 51.4 10.6 104 444-560 51-161 (579)
222 PRK06112 acetolactate synthase 92.6 0.75 1.6E-05 51.4 10.6 103 444-559 61-171 (578)
223 PRK12474 hypothetical protein; 92.6 0.8 1.7E-05 50.4 10.7 115 430-560 44-166 (518)
224 cd02003 TPP_IolD Thiamine pyro 92.5 1.1 2.4E-05 42.6 10.3 146 44-194 17-185 (205)
225 COG0028 IlvB Thiamine pyrophos 92.5 0.57 1.2E-05 51.7 9.3 103 444-559 51-161 (550)
226 PRK06048 acetolactate synthase 92.5 0.72 1.6E-05 51.3 10.3 103 444-559 57-167 (561)
227 TIGR02720 pyruv_oxi_spxB pyruv 92.4 0.83 1.8E-05 51.0 10.7 114 430-559 39-159 (575)
228 cd02761 MopB_FmdB-FwdB The Mop 92.4 0.41 8.9E-06 51.0 7.9 115 220-340 55-181 (415)
229 cd02015 TPP_AHAS Thiamine pyro 92.3 1 2.2E-05 42.2 9.5 111 77-194 55-175 (186)
230 PRK07282 acetolactate synthase 92.2 0.73 1.6E-05 51.3 9.9 115 430-560 49-171 (566)
231 PRK08155 acetolactate synthase 92.2 2.4 5.1E-05 47.3 13.9 115 429-559 51-173 (564)
232 cd02008 TPP_IOR_alpha Thiamine 92.2 1.7 3.8E-05 40.3 10.9 109 79-190 58-174 (178)
233 PRK06965 acetolactate synthase 92.0 2.2 4.7E-05 47.8 13.5 115 429-559 59-181 (587)
234 PRK07789 acetolactate synthase 91.9 1 2.2E-05 50.7 10.7 114 430-559 70-191 (612)
235 TIGR02418 acolac_catab acetola 91.6 0.96 2.1E-05 50.0 9.9 114 430-559 37-158 (539)
236 PF00676 E1_dh: Dehydrogenase 91.6 0.51 1.1E-05 47.8 7.1 107 83-193 112-225 (300)
237 CHL00099 ilvB acetohydroxyacid 91.5 0.94 2E-05 50.7 9.8 114 430-559 52-173 (585)
238 PRK08273 thiamine pyrophosphat 91.3 1.1 2.3E-05 50.3 10.0 115 430-560 43-165 (597)
239 cd07034 TPP_PYR_PFOR_IOR-alpha 91.3 0.75 1.6E-05 41.8 7.3 101 443-556 52-158 (160)
240 PRK06163 hypothetical protein; 91.2 1.9 4.2E-05 40.9 10.2 108 78-194 63-174 (202)
241 PRK08327 acetolactate synthase 91.2 0.83 1.8E-05 50.9 9.0 120 431-559 52-181 (569)
242 PRK08527 acetolactate synthase 91.0 1.2 2.5E-05 49.7 9.8 103 444-559 53-163 (563)
243 cd07036 TPP_PYR_E1-PDHc-beta_l 90.8 1.9 4.2E-05 39.5 9.5 94 444-555 56-164 (167)
244 cd00568 TPP_enzymes Thiamine p 90.8 1.2 2.5E-05 40.7 8.2 106 78-191 52-167 (168)
245 PRK06154 hypothetical protein; 90.8 1.8 3.9E-05 48.2 11.1 113 430-559 55-176 (565)
246 COG3957 Phosphoketolase [Carbo 90.8 0.46 1E-05 52.0 6.1 78 438-520 152-240 (793)
247 PRK05899 transketolase; Review 90.8 2.4 5.2E-05 47.8 12.2 116 67-193 368-486 (624)
248 PRK05858 hypothetical protein; 90.7 1.8 3.9E-05 47.9 11.0 114 430-559 43-164 (542)
249 PRK05444 1-deoxy-D-xylulose-5- 90.7 4.5 9.9E-05 45.1 14.1 153 27-194 279-440 (580)
250 TIGR00173 menD 2-succinyl-5-en 90.6 0.85 1.8E-05 48.9 8.1 115 430-560 39-167 (432)
251 PRK07092 benzoylformate decarb 90.5 1.5 3.3E-05 48.4 10.1 116 430-560 49-172 (530)
252 PLN02683 pyruvate dehydrogenas 90.2 12 0.00027 38.8 15.9 153 26-192 26-197 (356)
253 PRK06546 pyruvate dehydrogenas 90.1 1.5 3.3E-05 48.9 9.8 103 444-559 53-162 (578)
254 cd02002 TPP_BFDC Thiamine pyro 90.1 4.8 0.0001 37.1 11.8 140 45-191 20-177 (178)
255 cd02000 TPP_E1_PDC_ADC_BCADC T 90.1 1.5 3.2E-05 44.3 8.9 111 80-196 112-231 (293)
256 PRK09212 pyruvate dehydrogenas 90.0 25 0.00054 36.1 20.4 238 27-311 4-261 (327)
257 cd03375 TPP_OGFOR Thiamine pyr 89.8 4.9 0.00011 37.8 11.6 157 28-196 9-187 (193)
258 cd07033 TPP_PYR_DXS_TK_like Py 89.8 2.9 6.3E-05 37.8 9.7 98 444-556 51-154 (156)
259 PRK11866 2-oxoacid ferredoxin 89.8 3.8 8.3E-05 40.9 11.2 156 29-193 18-192 (279)
260 TIGR03182 PDH_E1_alph_y pyruva 89.5 1.7 3.6E-05 44.4 8.8 111 80-196 118-237 (315)
261 PRK11892 pyruvate dehydrogenas 88.8 12 0.00026 40.4 14.9 148 25-189 140-309 (464)
262 cd02014 TPP_POX Thiamine pyrop 88.7 19 0.00041 33.3 14.6 123 66-193 42-173 (178)
263 PRK12571 1-deoxy-D-xylulose-5- 88.6 3.7 8E-05 46.3 11.4 151 27-194 319-480 (641)
264 TIGR03394 indol_phenyl_DC indo 88.3 2.2 4.7E-05 47.1 9.3 108 80-194 411-522 (535)
265 PLN02582 1-deoxy-D-xylulose-5- 88.2 13 0.00029 42.0 15.4 153 27-194 356-517 (677)
266 TIGR00204 dxs 1-deoxy-D-xylulo 88.2 14 0.00029 41.7 15.5 152 27-194 310-471 (617)
267 COG1071 AcoA Pyruvate/2-oxoglu 88.2 3.6 7.8E-05 42.3 9.9 117 69-191 137-259 (358)
268 PRK12315 1-deoxy-D-xylulose-5- 88.1 4 8.7E-05 45.5 11.2 149 27-194 278-438 (581)
269 PRK05778 2-oxoglutarate ferred 88.1 6.4 0.00014 39.8 11.6 159 28-194 28-204 (301)
270 PRK09628 oorB 2-oxoglutarate-a 88.1 14 0.00031 36.9 14.0 156 30-194 28-202 (277)
271 COG2609 AceE Pyruvate dehydrog 87.9 2.2 4.8E-05 46.9 8.5 84 437-530 190-292 (887)
272 PRK09444 pntB pyridine nucleot 87.6 0.52 1.1E-05 49.4 3.5 39 225-263 296-334 (462)
273 CHL00149 odpA pyruvate dehydro 87.3 3.9 8.4E-05 42.3 9.8 97 91-193 158-259 (341)
274 cd03372 TPP_ComE Thiamine pyro 87.2 18 0.0004 33.5 13.5 105 79-194 49-156 (179)
275 PRK11916 electron transfer fla 86.9 1.9 4.1E-05 43.7 7.1 111 238-363 196-311 (312)
276 TIGR03846 sulfopy_beta sulfopy 86.4 5.1 0.00011 37.3 9.2 106 78-194 48-157 (181)
277 PLN02374 pyruvate dehydrogenas 86.1 4.2 9.1E-05 43.3 9.5 96 91-192 224-324 (433)
278 cd03371 TPP_PpyrDC Thiamine py 86.1 6.2 0.00013 37.0 9.7 108 77-194 53-164 (188)
279 PRK09124 pyruvate dehydrogenas 85.8 13 0.00029 41.4 13.9 158 33-194 364-531 (574)
280 TIGR03297 Ppyr-DeCO2ase phosph 85.8 30 0.00064 36.1 15.4 158 27-195 172-338 (361)
281 TIGR00300 conserved hypothetic 85.7 1.4 3E-05 45.2 5.3 67 295-363 332-405 (407)
282 PRK13012 2-oxoacid dehydrogena 85.7 35 0.00076 39.8 17.1 178 64-265 572-761 (896)
283 cd02018 TPP_PFOR Thiamine pyro 85.5 10 0.00022 36.9 11.3 88 104-195 103-205 (237)
284 TIGR03336 IOR_alpha indolepyru 85.1 5.8 0.00013 44.4 10.6 117 78-195 409-532 (595)
285 PRK11869 2-oxoacid ferredoxin 84.7 14 0.0003 37.0 11.8 155 29-192 19-192 (280)
286 PRK14138 NAD-dependent deacety 84.7 1.6 3.5E-05 42.8 5.2 68 295-362 171-241 (244)
287 COG0075 Serine-pyruvate aminot 84.4 5.2 0.00011 41.7 8.9 64 458-541 56-127 (383)
288 COG1282 PntB NAD/NADP transhyd 84.3 0.94 2E-05 45.7 3.4 88 225-312 298-393 (463)
289 PLN02225 1-deoxy-D-xylulose-5- 83.7 25 0.00055 39.7 14.5 153 27-194 381-542 (701)
290 TIGR03129 one_C_dehyd_B formyl 83.6 5.9 0.00013 42.1 9.5 114 220-340 61-187 (421)
291 PRK00481 NAD-dependent deacety 83.6 2.1 4.5E-05 42.0 5.5 68 295-362 170-240 (242)
292 PRK03363 fixB putative electro 83.6 2.9 6.2E-05 42.5 6.5 111 238-363 197-312 (313)
293 PLN00022 electron transfer fla 83.5 2.8 6E-05 43.3 6.5 112 238-364 239-354 (356)
294 PF02233 PNTB: NAD(P) transhyd 83.1 1.2 2.6E-05 47.2 3.8 88 225-312 297-392 (463)
295 cd02768 MopB_NADH-Q-OR-NuoG2 M 82.0 4.6 9.9E-05 42.5 7.8 113 220-338 70-189 (386)
296 PLN02573 pyruvate decarboxylas 81.8 30 0.00065 38.6 14.5 113 78-194 434-553 (578)
297 cd02752 MopB_Formate-Dh-Na-lik 81.6 1.4 3.1E-05 49.5 3.9 114 221-339 73-211 (649)
298 PRK07449 2-succinyl-5-enolpyru 81.3 14 0.0003 41.2 11.7 123 66-194 416-550 (568)
299 COG3958 Transketolase, C-termi 80.9 18 0.00039 35.9 10.5 156 27-193 7-168 (312)
300 cd03376 TPP_PFOR_porB_like Thi 80.0 28 0.00062 33.8 11.9 95 97-195 87-202 (235)
301 COG1029 FwdB Formylmethanofura 79.9 8.8 0.00019 39.0 8.2 116 222-338 232-370 (429)
302 cd01460 vWA_midasin VWA_Midasi 79.8 8.5 0.00018 38.1 8.2 82 459-545 166-257 (266)
303 PTZ00408 NAD-dependent deacety 79.0 4 8.7E-05 39.9 5.6 68 295-362 165-235 (242)
304 cd02750 MopB_Nitrate-R-NarG-li 78.3 3.8 8.3E-05 44.3 5.8 117 220-340 86-212 (461)
305 cd02773 MopB_Res-Cmplx1_Nad11 77.7 7.2 0.00016 40.9 7.5 111 220-338 69-186 (375)
306 PLN02234 1-deoxy-D-xylulose-5- 77.5 59 0.0013 36.6 14.7 152 27-194 357-518 (641)
307 PRK11864 2-ketoisovalerate fer 76.7 43 0.00094 33.8 12.2 123 65-191 63-205 (300)
308 PRK10886 DnaA initiator-associ 76.5 20 0.00043 33.8 9.4 103 26-128 27-149 (196)
309 PRK11867 2-oxoglutarate ferred 75.6 17 0.00037 36.5 9.2 158 28-194 27-203 (286)
310 cd01408 SIRT1 SIRT1: Eukaryoti 75.6 3.5 7.7E-05 40.1 4.2 64 295-358 168-235 (235)
311 TIGR01973 NuoG NADH-quinone ox 75.5 7.1 0.00015 43.9 7.1 114 220-340 287-405 (603)
312 COG2025 FixB Electron transfer 75.5 9.3 0.0002 38.6 7.1 111 239-364 198-312 (313)
313 PLN02269 Pyruvate dehydrogenas 75.4 20 0.00043 37.4 9.8 108 77-192 147-258 (362)
314 TIGR02177 PorB_KorB 2-oxoacid: 75.3 17 0.00037 36.5 9.0 150 31-193 14-186 (287)
315 PF02779 Transket_pyr: Transke 74.2 29 0.00062 32.1 9.8 101 444-557 60-171 (178)
316 TIGR03186 AKGDH_not_PDH alpha- 74.0 69 0.0015 37.4 14.4 182 64-264 559-752 (889)
317 PLN02980 2-oxoglutarate decarb 74.0 8.4 0.00018 48.6 7.8 113 78-194 767-890 (1655)
318 cd02774 MopB_Res-Cmplx1_Nad11- 73.9 15 0.00032 38.4 8.5 112 220-337 70-188 (366)
319 cd01412 SIRT5_Af1_CobB SIRT5_A 73.6 4.9 0.00011 38.8 4.6 63 296-358 158-223 (224)
320 PRK05333 NAD-dependent deacety 73.2 6 0.00013 39.8 5.2 69 295-363 207-278 (285)
321 PRK13936 phosphoheptose isomer 73.0 29 0.00063 32.7 9.6 100 28-127 31-150 (197)
322 cd02772 MopB_NDH-1_NuoG2 MopB_ 72.8 8.3 0.00018 41.0 6.6 112 220-338 70-192 (414)
323 PLN02683 pyruvate dehydrogenas 72.7 33 0.00072 35.7 10.7 146 391-555 27-194 (356)
324 PRK00414 gmhA phosphoheptose i 72.3 30 0.00064 32.5 9.4 102 26-128 30-151 (192)
325 cd00368 Molybdopterin-Binding 72.3 3 6.4E-05 43.6 3.0 117 220-340 72-198 (374)
326 TIGR03479 DMSO_red_II_alp DMSO 71.6 11 0.00023 44.7 7.6 117 220-340 140-266 (912)
327 TIGR03393 indolpyr_decarb indo 71.5 21 0.00046 39.4 9.6 110 80-194 412-528 (539)
328 cd01453 vWA_transcription_fact 71.3 21 0.00045 33.2 8.1 66 457-544 107-179 (183)
329 PRK11865 pyruvate ferredoxin o 71.1 46 0.00099 33.6 10.9 147 40-191 37-209 (299)
330 TIGR00441 gmhA phosphoheptose 70.5 34 0.00073 30.7 9.1 97 31-127 2-118 (154)
331 TIGR01591 Fdh-alpha formate de 69.7 7.4 0.00016 44.3 5.7 115 220-339 69-196 (671)
332 cd02767 MopB_ydeP The MopB_yde 68.7 8.1 0.00018 43.0 5.5 114 220-338 82-203 (574)
333 PRK13937 phosphoheptose isomer 68.1 40 0.00087 31.4 9.4 102 27-128 25-146 (188)
334 cd02012 TPP_TK Thiamine pyroph 67.7 41 0.0009 33.1 9.8 107 80-195 113-229 (255)
335 PRK11892 pyruvate dehydrogenas 66.9 36 0.00077 36.8 9.7 94 444-554 201-308 (464)
336 PRK05261 putative phosphoketol 66.4 1.1E+02 0.0023 35.4 13.6 116 65-193 449-581 (785)
337 cd01413 SIR2_Af2 SIR2_Af2: Arc 66.1 5.6 0.00012 38.4 3.2 46 295-340 164-211 (222)
338 cd01409 SIRT4 SIRT4: Eukaryoti 66.1 5.8 0.00013 39.3 3.4 47 295-341 197-245 (260)
339 PRK09212 pyruvate dehydrogenas 65.2 53 0.0012 33.7 10.3 96 443-554 62-170 (327)
340 cd02007 TPP_DXS Thiamine pyrop 65.0 60 0.0013 30.5 9.9 99 80-192 83-189 (195)
341 cd01410 SIRT7 SIRT7: Eukaryoti 64.6 6.3 0.00014 37.5 3.2 46 295-340 148-195 (206)
342 PTZ00409 Sir2 (Silent Informat 64.4 6.6 0.00014 39.1 3.4 68 295-363 192-263 (271)
343 PRK09130 NADH dehydrogenase su 64.2 18 0.00039 41.2 7.3 110 220-337 288-404 (687)
344 cd02016 TPP_E1_OGDC_like Thiam 64.0 36 0.00079 33.7 8.4 96 91-192 141-245 (265)
345 smart00861 Transket_pyr Transk 63.4 56 0.0012 29.7 9.2 99 444-556 61-164 (168)
346 cd02753 MopB_Formate-Dh-H Form 62.4 13 0.00027 40.9 5.5 116 220-340 70-198 (512)
347 COG0777 AccD Acetyl-CoA carbox 62.3 10 0.00022 37.2 4.0 61 434-494 127-210 (294)
348 PF01855 POR_N: Pyruvate flavo 61.9 37 0.00081 32.9 8.0 97 444-556 48-152 (230)
349 KOG1905 Class IV sirtuins (SIR 61.7 36 0.00078 33.8 7.6 77 294-370 208-287 (353)
350 cd01411 SIR2H SIR2H: Uncharact 61.2 7.1 0.00015 37.7 2.9 46 295-340 164-210 (225)
351 COG1154 Dxs Deoxyxylulose-5-ph 61.2 42 0.00092 36.9 8.8 100 443-557 369-474 (627)
352 TIGR00853 pts-lac PTS system, 61.1 15 0.00032 30.2 4.4 34 235-268 3-36 (95)
353 COG2247 LytB Putative cell wal 60.0 20 0.00044 36.0 5.8 55 238-312 30-85 (337)
354 PRK09939 putative oxidoreducta 60.0 8.9 0.00019 44.1 3.8 113 220-337 126-247 (759)
355 cd05007 SIS_Etherase N-acetylm 59.7 45 0.00098 32.9 8.3 102 27-128 36-158 (257)
356 TIGR01701 Fdhalpha-like oxidor 59.6 15 0.00033 42.3 5.7 113 220-337 117-237 (743)
357 PF02603 Hpr_kinase_N: HPr Ser 59.3 10 0.00022 33.0 3.3 47 223-272 68-114 (127)
358 PRK13761 hypothetical protein; 58.8 24 0.00052 33.6 5.7 48 221-269 53-100 (248)
359 PRK13938 phosphoheptose isomer 58.4 56 0.0012 30.8 8.3 101 27-128 32-153 (196)
360 PF13519 VWA_2: von Willebrand 57.9 24 0.00052 31.6 5.7 67 457-542 99-171 (172)
361 cd00368 Molybdopterin-Binding 57.4 58 0.0013 33.8 9.3 88 222-317 230-321 (374)
362 PRK09129 NADH dehydrogenase su 56.8 27 0.00059 40.5 7.2 114 220-339 288-411 (776)
363 cd02766 MopB_3 The MopB_3 CD i 56.6 8 0.00017 42.3 2.7 116 220-340 74-199 (501)
364 COG0552 FtsY Signal recognitio 56.2 23 0.0005 36.0 5.6 48 222-269 153-200 (340)
365 KOG0451 Predicted 2-oxoglutara 54.1 26 0.00057 37.7 5.7 90 458-558 318-424 (913)
366 TIGR01553 formate-DH-alph form 54.0 15 0.00033 43.7 4.6 114 221-339 125-262 (1009)
367 cd05564 PTS_IIB_chitobiose_lic 52.9 28 0.00061 28.5 4.7 32 237-268 1-32 (96)
368 COG0794 GutQ Predicted sugar p 51.5 56 0.0012 30.8 7.0 38 91-128 88-126 (202)
369 PRK09405 aceE pyruvate dehydro 51.1 4.2E+02 0.009 31.3 15.1 178 64-265 564-756 (891)
370 cd01407 SIR2-fam SIR2 family o 50.9 12 0.00026 35.9 2.6 46 295-340 160-207 (218)
371 COG4032 Predicted thiamine-pyr 50.1 37 0.00081 29.8 5.0 97 446-554 56-159 (172)
372 COG1701 Uncharacterized protei 50.0 37 0.0008 31.9 5.3 48 221-269 55-102 (256)
373 PRK08659 2-oxoglutarate ferred 50.0 1.3E+02 0.0029 31.5 10.3 47 443-491 59-109 (376)
374 COG0541 Ffh Signal recognition 49.5 30 0.00064 36.6 5.2 47 223-269 115-161 (451)
375 cd02751 MopB_DMSOR-like The Mo 49.1 27 0.00059 39.2 5.5 120 220-340 77-219 (609)
376 cd02761 MopB_FmdB-FwdB The Mop 49.0 95 0.0021 32.8 9.4 42 222-263 222-267 (415)
377 COG0567 SucA 2-oxoglutarate de 48.7 41 0.00089 38.8 6.5 111 439-560 298-432 (906)
378 PF13580 SIS_2: SIS domain; PD 48.4 99 0.0022 27.1 7.9 97 26-123 21-138 (138)
379 PRK07860 NADH dehydrogenase su 48.1 31 0.00068 40.1 5.8 112 220-338 295-417 (797)
380 KOG4166 Thiamine pyrophosphate 48.0 1.2E+02 0.0026 31.9 9.0 99 447-559 144-251 (675)
381 cd05565 PTS_IIB_lactose PTS_II 47.7 33 0.00071 28.4 4.3 32 237-268 2-33 (99)
382 PF02302 PTS_IIB: PTS system, 47.7 28 0.00061 27.7 4.0 53 237-309 1-54 (90)
383 PTZ00182 3-methyl-2-oxobutanat 47.6 1.4E+02 0.003 31.0 10.0 39 510-554 163-201 (355)
384 COG2204 AtoC Response regulato 47.3 2.3E+02 0.005 30.6 11.6 134 98-268 60-197 (464)
385 CHL00144 odpB pyruvate dehydro 46.0 1.4E+02 0.003 30.6 9.6 40 510-555 132-171 (327)
386 PF00465 Fe-ADH: Iron-containi 45.3 21 0.00044 37.3 3.5 75 225-311 11-87 (366)
387 PF00766 ETF_alpha: Electron t 44.9 23 0.00049 28.5 2.8 64 237-312 8-73 (86)
388 cd05006 SIS_GmhA Phosphoheptos 44.3 1.7E+02 0.0038 26.6 9.3 102 27-128 20-141 (177)
389 PRK12570 N-acetylmuramic acid- 44.1 64 0.0014 32.6 6.7 102 27-128 45-167 (296)
390 COG0021 TktA Transketolase [Ca 44.1 2.1E+02 0.0045 32.0 10.7 157 25-192 355-520 (663)
391 cd02754 MopB_Nitrate-R-NapA-li 44.1 22 0.00048 39.5 3.7 115 220-340 71-201 (565)
392 PRK07119 2-ketoisovalerate fer 43.9 42 0.00091 34.8 5.5 46 443-490 59-108 (352)
393 PRK05441 murQ N-acetylmuramic 43.8 1E+02 0.0022 31.2 8.1 101 28-128 50-171 (299)
394 cd05569 PTS_IIB_fructose PTS_I 43.7 68 0.0015 26.2 5.7 59 240-313 5-64 (96)
395 PF10087 DUF2325: Uncharacteri 43.0 71 0.0015 26.1 5.7 52 239-309 2-55 (97)
396 PF12804 NTP_transf_3: MobA-li 42.9 2.4E+02 0.0051 24.9 11.3 95 27-124 24-124 (160)
397 PRK09330 cell division protein 42.7 61 0.0013 34.0 6.4 82 221-310 84-167 (384)
398 PRK09860 putative alcohol dehy 42.7 77 0.0017 33.3 7.3 43 224-266 18-62 (383)
399 cd08193 HVD 5-hydroxyvalerate 42.4 96 0.0021 32.5 8.0 43 225-267 14-58 (376)
400 TIGR00274 N-acetylmuramic acid 41.0 88 0.0019 31.5 7.1 101 28-128 45-166 (291)
401 COG0846 SIR2 NAD-dependent pro 40.6 39 0.00084 33.2 4.3 66 295-362 175-245 (250)
402 cd00296 SIR2 SIR2 superfamily 40.2 22 0.00048 34.0 2.6 45 296-340 163-209 (222)
403 cd08190 HOT Hydroxyacid-oxoaci 40.1 96 0.0021 33.0 7.7 43 225-267 11-55 (414)
404 cd08185 Fe-ADH1 Iron-containin 39.7 92 0.002 32.7 7.4 43 225-267 14-58 (380)
405 PRK11557 putative DNA-binding 39.7 67 0.0014 31.9 6.1 69 221-309 114-182 (278)
406 PRK02947 hypothetical protein; 39.6 1.1E+02 0.0023 30.0 7.4 100 26-127 26-145 (246)
407 PF09936 Methyltrn_RNA_4: SAM- 39.5 89 0.0019 28.9 6.1 65 225-308 90-158 (185)
408 KOG0523 Transketolase [Carbohy 39.5 3.9E+02 0.0084 29.6 11.7 204 30-268 323-538 (632)
409 COG1737 RpiR Transcriptional r 39.4 62 0.0013 32.4 5.7 71 221-311 116-186 (281)
410 cd02974 AhpF_NTD_N Alkyl hydro 39.4 87 0.0019 25.6 5.6 45 534-579 4-48 (94)
411 PF00448 SRP54: SRP54-type pro 39.4 48 0.001 31.2 4.7 45 224-268 17-61 (196)
412 PRK13982 bifunctional SbtC-lik 39.3 95 0.0021 33.6 7.4 88 391-489 233-342 (475)
413 cd08194 Fe-ADH6 Iron-containin 39.3 98 0.0021 32.4 7.5 44 224-267 10-55 (375)
414 cd02753 MopB_Formate-Dh-H Form 39.1 1.8E+02 0.0039 31.8 9.9 42 222-263 265-310 (512)
415 TIGR02638 lactal_redase lactal 39.1 88 0.0019 32.8 7.1 43 225-267 17-61 (379)
416 KOG0081 GTPase Rab27, small G 39.0 47 0.001 29.9 4.1 40 235-274 122-166 (219)
417 COG1419 FlhF Flagellar GTP-bin 38.9 84 0.0018 33.1 6.6 57 233-308 231-287 (407)
418 COG1454 EutG Alcohol dehydroge 38.8 1.2E+02 0.0026 31.8 7.8 44 224-267 16-61 (377)
419 cd08176 LPO Lactadehyde:propan 38.8 1.2E+02 0.0025 31.9 7.9 75 225-311 16-94 (377)
420 cd08192 Fe-ADH7 Iron-containin 38.6 1.2E+02 0.0026 31.6 8.0 75 225-311 12-90 (370)
421 TIGR00239 2oxo_dh_E1 2-oxoglut 38.5 95 0.0021 36.5 7.6 98 91-192 344-448 (929)
422 cd02774 MopB_Res-Cmplx1_Nad11- 38.4 36 0.00078 35.5 4.0 37 226-262 212-252 (366)
423 cd08770 DAP_dppA_3 Peptidase M 38.3 3.3E+02 0.0071 27.0 10.3 142 29-181 38-204 (263)
424 COG1737 RpiR Transcriptional r 37.9 2.1E+02 0.0046 28.5 9.3 92 31-128 121-217 (281)
425 COG0299 PurN Folate-dependent 37.7 1.8E+02 0.0039 27.3 7.8 37 458-494 2-43 (200)
426 TIGR03127 RuMP_HxlB 6-phospho 37.6 2E+02 0.0043 26.3 8.5 89 30-128 20-112 (179)
427 cd02762 MopB_1 The MopB_1 CD i 37.2 51 0.0011 36.4 5.2 114 221-340 71-204 (539)
428 KOG0450 2-oxoglutarate dehydro 37.1 87 0.0019 35.0 6.5 90 460-560 404-508 (1017)
429 PRK15482 transcriptional regul 37.0 69 0.0015 32.0 5.7 69 221-309 121-189 (285)
430 cd05005 SIS_PHI Hexulose-6-pho 37.0 2.5E+02 0.0055 25.6 9.2 88 31-128 24-115 (179)
431 PF07905 PucR: Purine cataboli 36.9 72 0.0016 27.4 5.0 45 224-268 60-104 (123)
432 COG2086 FixA Electron transfer 36.5 44 0.00094 33.0 4.0 41 229-269 104-144 (260)
433 cd02766 MopB_3 The MopB_3 CD i 36.3 2.4E+02 0.0052 30.8 10.2 93 222-317 266-371 (501)
434 TIGR00065 ftsZ cell division p 36.1 1E+02 0.0023 31.9 6.9 82 222-310 89-171 (349)
435 TIGR01012 Sa_S2_E_A ribosomal 35.5 2E+02 0.0044 27.1 8.0 73 223-314 47-120 (196)
436 PF07085 DRTGG: DRTGG domain; 35.4 46 0.001 27.6 3.5 32 236-271 62-93 (105)
437 KOG3954 Electron transfer flav 35.4 89 0.0019 30.6 5.6 120 230-364 205-335 (336)
438 PRK15454 ethanol dehydrogenase 35.3 1.3E+02 0.0028 31.8 7.6 43 225-267 37-81 (395)
439 cd08663 DAP_dppA_1 Peptidase M 35.3 2.1E+02 0.0046 28.4 8.5 141 29-180 38-204 (266)
440 PRK10624 L-1,2-propanediol oxi 35.2 1.1E+02 0.0025 32.0 7.2 44 224-267 17-62 (382)
441 cd08189 Fe-ADH5 Iron-containin 35.1 1.2E+02 0.0025 31.8 7.3 43 225-267 14-58 (374)
442 COG1915 Uncharacterized conser 34.9 9.8 0.00021 37.7 -0.8 98 261-364 301-405 (415)
443 TIGR01580 narG respiratory nit 34.7 1E+02 0.0022 37.3 7.1 117 220-340 161-287 (1235)
444 cd05005 SIS_PHI Hexulose-6-pho 34.6 2E+02 0.0043 26.3 8.0 46 221-268 19-64 (179)
445 cd08181 PPD-like 1,3-propanedi 34.5 1.3E+02 0.0028 31.3 7.4 43 225-267 14-58 (357)
446 PF02146 SIR2: Sir2 family; I 34.5 36 0.00078 31.4 3.0 20 295-314 156-175 (178)
447 cd02201 FtsZ_type1 FtsZ is a G 34.4 1.1E+02 0.0025 30.9 6.8 82 222-310 72-154 (304)
448 cd08769 DAP_dppA_2 Peptidase M 34.1 78 0.0017 31.4 5.3 143 28-181 37-205 (270)
449 cd02759 MopB_Acetylene-hydrata 34.0 24 0.00052 38.3 1.9 113 220-335 74-198 (477)
450 cd02757 MopB_Arsenate-R This C 33.9 35 0.00075 37.6 3.2 112 220-339 80-205 (523)
451 PRK09404 sucA 2-oxoglutarate d 33.8 1.6E+02 0.0034 34.9 8.4 96 91-192 343-447 (924)
452 PTZ00254 40S ribosomal protein 33.8 1.1E+02 0.0023 30.1 6.0 73 223-314 56-130 (249)
453 PRK13685 hypothetical protein; 33.7 2E+02 0.0043 29.4 8.6 79 458-544 194-287 (326)
454 TIGR02717 AcCoA-syn-alpha acet 33.5 6.3E+02 0.014 27.1 13.6 43 226-271 391-434 (447)
455 cd08178 AAD_C C-terminal alcoh 33.5 1E+02 0.0022 32.6 6.6 41 227-267 13-53 (398)
456 cd08191 HHD 6-hydroxyhexanoate 33.5 1.4E+02 0.0031 31.3 7.6 43 225-267 11-54 (386)
457 cd02771 MopB_NDH-1_NuoG2-N7 Mo 33.1 73 0.0016 34.4 5.5 90 220-317 70-160 (472)
458 PRK05333 NAD-dependent deacety 32.9 42 0.00092 33.7 3.4 38 221-270 5-42 (285)
459 COG1208 GCD1 Nucleoside-diphos 32.9 2.8E+02 0.0061 28.8 9.6 63 7-73 15-82 (358)
460 PRK08366 vorA 2-ketoisovalerat 32.9 83 0.0018 33.2 5.6 42 444-487 61-106 (390)
461 cd05014 SIS_Kpsf KpsF-like pro 32.8 1.4E+02 0.003 25.4 6.2 39 90-128 48-87 (128)
462 PRK06091 membrane protein FdrA 32.7 7.2E+02 0.016 27.5 17.5 50 24-73 200-260 (555)
463 PLN02522 ATP citrate (pro-S)-l 32.5 6.1E+02 0.013 28.5 12.3 95 441-545 206-315 (608)
464 PRK08493 NADH dehydrogenase su 32.5 52 0.0011 38.2 4.3 107 222-335 297-408 (819)
465 PRK13532 nitrate reductase cat 32.3 88 0.0019 36.7 6.3 41 299-339 203-249 (830)
466 cd08170 GlyDH Glycerol dehydro 32.1 1E+02 0.0022 31.9 6.2 41 225-266 11-52 (351)
467 cd08188 Fe-ADH4 Iron-containin 31.8 1.4E+02 0.0031 31.2 7.3 43 225-267 16-60 (377)
468 PTZ00410 NAD-dependent SIR2; P 31.7 44 0.00095 34.5 3.2 43 296-338 199-242 (349)
469 PRK10586 putative oxidoreducta 31.5 1.5E+02 0.0031 31.0 7.1 40 224-264 21-62 (362)
470 PRK05579 bifunctional phosphop 31.2 1.6E+02 0.0034 31.2 7.4 142 391-544 168-340 (399)
471 cd02072 Glm_B12_BD B12 binding 31.2 82 0.0018 27.4 4.4 27 33-60 100-126 (128)
472 PRK11382 frlB fructoselysine-6 30.8 78 0.0017 32.6 5.0 95 31-128 33-132 (340)
473 cd02770 MopB_DmsA-EC This CD ( 30.7 61 0.0013 36.5 4.6 117 220-340 79-211 (617)
474 PRK06027 purU formyltetrahydro 30.6 1.9E+02 0.004 29.1 7.5 45 457-520 90-138 (286)
475 cd08187 BDH Butanol dehydrogen 30.3 1.9E+02 0.0041 30.3 7.9 41 227-267 19-61 (382)
476 COG2894 MinD Septum formation 30.2 1.6E+02 0.0035 28.3 6.4 113 435-553 8-141 (272)
477 COG3960 Glyoxylate carboligase 29.9 43 0.00094 33.7 2.7 50 505-559 113-165 (592)
478 PRK11337 DNA-binding transcrip 29.6 81 0.0017 31.6 4.8 45 222-268 127-171 (292)
479 cd08186 Fe-ADH8 Iron-containin 29.3 2.1E+02 0.0046 30.0 8.1 33 235-267 26-59 (383)
480 COG3925 N-terminal domain of t 29.3 57 0.0012 26.4 2.7 31 301-337 39-69 (103)
481 PRK08285 cobH precorrin-8X met 29.2 1.2E+02 0.0025 28.9 5.3 52 223-274 138-191 (208)
482 TIGR01706 NAPA periplasmic nit 29.1 1.1E+02 0.0023 36.0 6.3 42 298-339 202-249 (830)
483 PF00384 Molybdopterin: Molybd 29.1 25 0.00054 37.4 1.0 114 222-335 23-149 (432)
484 cd05013 SIS_RpiR RpiR-like pro 28.9 98 0.0021 26.4 4.7 43 224-268 2-44 (139)
485 cd08551 Fe-ADH iron-containing 28.9 1.7E+02 0.0036 30.5 7.2 43 225-267 11-55 (370)
486 KOG1184 Thiamine pyrophosphate 28.9 87 0.0019 33.8 4.8 89 465-561 77-172 (561)
487 cd02771 MopB_NDH-1_NuoG2-N7 Mo 28.8 90 0.002 33.7 5.3 44 222-265 252-295 (472)
488 PF06711 DUF1198: Protein of u 28.8 44 0.00094 29.3 2.2 31 238-268 11-41 (148)
489 cd08175 G1PDH Glycerol-1-phosp 28.4 1.6E+02 0.0035 30.4 6.9 41 225-266 11-53 (348)
490 cd05009 SIS_GlmS_GlmD_2 SIS (S 28.3 2E+02 0.0044 25.1 6.8 94 31-126 4-100 (153)
491 PRK11337 DNA-binding transcrip 28.1 3.4E+02 0.0073 27.0 9.1 94 31-128 131-227 (292)
492 TIGR00509 bisC_fam molybdopter 28.1 1.3E+02 0.0029 34.8 6.9 42 299-340 164-217 (770)
493 cd01455 vWA_F11C1-5a_type Von 28.0 3.8E+02 0.0082 25.1 8.4 81 444-545 92-187 (191)
494 COG3142 CutC Uncharacterized p 28.0 1E+02 0.0022 29.7 4.6 155 91-264 26-194 (241)
495 cd02765 MopB_4 The MopB_4 CD i 27.9 1.6E+02 0.0035 32.7 7.3 116 220-339 75-200 (567)
496 TIGR00162 conserved hypothetic 27.6 4.7E+02 0.01 24.4 9.1 93 27-131 33-126 (188)
497 PRK10892 D-arabinose 5-phospha 27.5 3.4E+02 0.0075 27.5 9.1 92 32-128 38-134 (326)
498 PRK04020 rps2P 30S ribosomal p 27.5 2.4E+02 0.0052 26.8 7.1 73 223-314 53-126 (204)
499 TIGR03590 PseG pseudaminic aci 27.0 3.4E+02 0.0074 26.9 8.8 17 107-123 252-268 (279)
500 PF07355 GRDB: Glycine/sarcosi 26.8 1.7E+02 0.0037 30.1 6.3 49 221-269 65-117 (349)
No 1
>PLN02573 pyruvate decarboxylase
Probab=100.00 E-value=9.4e-101 Score=840.89 Aligned_cols=571 Identities=85% Similarity=1.387 Sum_probs=473.7
Q ss_pred Cccccccc-cCCcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCccEE
Q 007917 15 SAPAPVRG-GASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGAC 93 (585)
Q Consensus 15 ~~~~~~~~-~~~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~ 93 (585)
++|-|-+. .++.++++++|++.|+++||+||||+||+++.+|+++|.+.++|++|.||||++|+||||||||+||.|||
T Consensus 3 ~~~~~~~~~~~~~~~~a~~l~~~L~~~Gv~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyaR~tg~gv~ 82 (578)
T PLN02573 3 SAPKPATPVSSSDATLGRHLARRLVEIGVTDVFSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARARGVGAC 82 (578)
T ss_pred CCCCCCCccccccccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHhCCCeE
Confidence 44444443 34468999999999999999999999999999999999655579999999999999999999999999999
Q ss_pred EEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHH
Q 007917 94 VVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELID 173 (585)
Q Consensus 94 ~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~ 173 (585)
++|+|||++|+++||++||.+++|||+|+|+.++...+++..+||.....+..++.++|+++|||+.++.+++++++.++
T Consensus 83 ~~t~GpG~~n~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~s~~v~~~~~~~~~l~ 162 (578)
T PLN02573 83 VVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVINNLEDAHELID 162 (578)
T ss_pred EEecCccHHHHHHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEEEEEeCCHHHHHHHHH
Confidence 99999999999999999999999999999999988777776677765433455678999999999999999999999999
Q ss_pred HHHHHhhhcCCcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHH
Q 007917 174 TAISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQK 253 (585)
Q Consensus 174 ~A~~~a~~~~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~ 253 (585)
+||+.|+++||||||+||.|++..+.+.....+.+....+......+.+..+++++++|.+||||+||+|.|+.++++.+
T Consensus 163 ~A~~~A~~~~gPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~AkrPvil~G~g~~~~~a~~ 242 (578)
T PLN02573 163 TAISTALKESKPVYISVSCNLAAIPHPTFSREPVPFFLTPRLSNKMSLEAAVEAAAEFLNKAVKPVLVGGPKLRVAKACK 242 (578)
T ss_pred HHHHHHHhcCCCEEEEeehhhhcCccccccCCCCCcccccCCCChHHHHHHHHHHHHHHHhCCCCEEEEChhhcccchHH
Confidence 99999999889999999999976432111111111111111111123566799999999999999999999999989999
Q ss_pred HHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEE
Q 007917 254 AFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIV 333 (585)
Q Consensus 254 ~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~i 333 (585)
++++|||++++||+||++|||+||++||+++|++.|..+++.+++++++||+||+||+++++..+..|..+.++.++|||
T Consensus 243 ~l~~lae~~~~PV~tt~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~i 322 (578)
T PLN02573 243 AFVELADASGYPVAVMPSAKGLVPEHHPHFIGTYWGAVSTPFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIV 322 (578)
T ss_pred HHHHHHHHhCCCEEECcccCCCCCCcCCCceEEeeCCCCCHHHHHHHHhCCEEEEECCccCCcccccccccCCCCcEEEE
Confidence 99999999999999999999999999999999987888899999999999999999999999888767655566789999
Q ss_pred cCCceeecCCCccccccHHHHHHHHHHHhccCccchhhhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEec
Q 007917 334 QPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAE 413 (585)
Q Consensus 334 d~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d 413 (585)
|.|+..+++.......+++.+|++|++.++.....|..|++...............++++.++++.|++.++++++++.|
T Consensus 323 d~d~~~i~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iiv~D 402 (578)
T PLN02573 323 QPDRVTIGNGPAFGCVLMKDFLEALAKRVKKNTTAYENYKRIFVPEGEPLKSEPGEPLRVNVLFKHIQKMLSGDTAVIAE 402 (578)
T ss_pred eCCEEEECCcceECCcCHHHHHHHHHHHhhccccccccccccccCcccCCCCCCCCccCHHHHHHHHHHhcCCCCEEEEe
Confidence 99999997322233447899999999887643222223322211111011112344699999999999999999999999
Q ss_pred CCccccccccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeC
Q 007917 414 TGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINN 489 (585)
Q Consensus 414 ~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN 489 (585)
+|++++...+++.+++..++.+.++|+|||++|+|||+++|.|+|+||+++|||||+ ||+|++||++|+++||+||
T Consensus 403 ~G~~~~~~~~~~~~~~~~~~~~~~~gsmG~glpaaiGa~lA~p~r~vv~i~GDG~f~m~~~EL~Ta~r~~lpvv~vV~NN 482 (578)
T PLN02573 403 TGDSWFNCQKLKLPEGCGYEFQMQYGSIGWSVGATLGYAQAAPDKRVIACIGDGSFQVTAQDVSTMIRCGQKSIIFLINN 482 (578)
T ss_pred cccchhhHHhccCCCCCeEEeecchhhhhhhhhHHHHHHHhCCCCceEEEEeccHHHhHHHHHHHHHHcCCCCEEEEEeC
Confidence 999854334566777777889999999999999999999999999999999999999 9999999999999999999
Q ss_pred CceeeeeeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChHHHHH
Q 007917 490 GGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLE 569 (585)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~~~~~~~ 569 (585)
++|++.+..++..+++++++||.++|++||...+++++++|++.+||+++|+++++...++|+||||.+++++.++.+..
T Consensus 483 ~~yg~~~~~~~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V~~~~eL~~al~~a~~~~~~~p~lieV~v~~~~~~~~~~~ 562 (578)
T PLN02573 483 GGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKVRTEEELIEAIATATGEKKDCLCFIEVIVHKDDTSKELLE 562 (578)
T ss_pred CceeEEEeecccCccccCCCCHHHHHHHhcCcCCceeEEEecCHHHHHHHHHHHHhhCCCCcEEEEEEcCcCCCCHHHHH
Confidence 99998554444456667789999999999721011389999999999999999983126899999999999999999999
Q ss_pred HHHhhhhhcCCCCCCC
Q 007917 570 WGSRVSAANSRPPNPQ 585 (585)
Q Consensus 570 ~~~~~~~~~~~~~~~~ 585 (585)
+...+++.|+++.|||
T Consensus 563 ~~~~~~~~~~~~~~~~ 578 (578)
T PLN02573 563 WGSRVSAANSRPPNPQ 578 (578)
T ss_pred HHHHHhhcccCCCCCC
Confidence 9999999999999998
No 2
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=6.9e-100 Score=818.74 Aligned_cols=513 Identities=27% Similarity=0.406 Sum_probs=433.7
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (585)
.++++++|++.|+++||++|||+||+.+++++|+|.++ +||+|.||||++|+|||+||||+||+ |||++|+|||++|+
T Consensus 1 ~~~ga~~lv~~L~~~GV~~VFGiPG~~i~~~~dal~~~-~i~~I~~RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~ 79 (550)
T COG0028 1 MMTGAEALVEALEANGVDTVFGIPGGSILPLYDALYDS-GIRHILVRHEQGAAFAADGYARATGKPGVCLVTSGPGATNL 79 (550)
T ss_pred CCcHHHHHHHHHHHcCCcEEEeCCCccHHHHHHHHHhC-CCcEEEeccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHH
Confidence 37899999999999999999999999999999999987 99999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-C
Q 007917 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (585)
Q Consensus 105 ~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (585)
++||++|+.|++|||+||||.++...+++ .+| ..|+..|++++|||++++.+++++++.+++||+.|.++ |
T Consensus 80 ~tgla~A~~d~~Pll~itGqv~~~~~g~~-----afQ---e~D~~~l~~p~tk~~~~v~~~~~ip~~i~~Af~~A~sgrp 151 (550)
T COG0028 80 LTGLADAYMDSVPLLAITGQVPTSLIGTD-----AFQ---EVDQVGLFRPITKYNFEVRSPEDIPEVVARAFRIALSGRP 151 (550)
T ss_pred HHHHHHHHhcCCCEEEEeCCccccccCcc-----hhh---hcchhhHhhhhheeEEEeCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999988876 333 45899999999999999999999999999999999997 5
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhC
Q 007917 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (585)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~ 263 (585)
|||||+||.|++..+.......+.. .........+. +++++++++|.+||||+|++|+|+.++++.+++++|+|+++
T Consensus 152 Gpv~i~iP~Dv~~~~~~~~~~~~~~--~~~~~p~~~~~-~~i~~aa~~L~~AkrPvIl~G~G~~~a~a~~~l~~lae~~~ 228 (550)
T COG0028 152 GPVVVDLPKDVLAAEAEEPGPEPAI--LPPYRPAPPPP-EAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLG 228 (550)
T ss_pred ceEEEEcChhHhhcccccccccccc--cccCCCCCCcH-HHHHHHHHHHHhCCCCEEEECCCccccccHHHHHHHHHHHC
Confidence 9999999999987432221111111 11111111122 78999999999999999999999999999999999999999
Q ss_pred CCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecCC
Q 007917 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (585)
Q Consensus 264 ~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~~ 343 (585)
+||++|++|||.+|++||+++|.. |..++..++.++.+||+||+||++|+++.+. |..+.++.++||||+|+.+++ +
T Consensus 229 ~Pv~~t~~gkg~~p~~hp~~lG~~-g~~g~~~a~~~~~~aDlll~vG~rf~~~~~~-~~~f~~~~~ii~iDidp~ei~-k 305 (550)
T COG0028 229 APVVTTLMGKGAVPEDHPLSLGML-GMHGTKAANEALEEADLLLAVGARFDDRVTG-YSGFAPPAAIIHIDIDPAEIG-K 305 (550)
T ss_pred CCEEEccCcCccCCCCCccccccc-cccccHHHHHHhhcCCEEEEecCCCcccccc-hhhhCCcCCEEEEeCChHHhC-C
Confidence 999999999999999999999996 7888888899999999999999999999987 776665544999999999997 4
Q ss_pred Ccccc----ccHHHHHHHHHHHhccC-ccchhhh---hhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEecCC
Q 007917 344 PSLGW----VFMADFLSALAKKLRKN-TTALENY---RRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETG 415 (585)
Q Consensus 344 ~~~~~----~~~~~~l~~L~~~l~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d~G 415 (585)
.+..+ .|++.+|++|.+.++.. ..++.+. ++.+..... ........+|.++++.|++.+++|.|++.|+|
T Consensus 306 ~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~v~~~l~~~~~~daiv~~d~G 383 (550)
T COG0028 306 NYPVDVPIVGDAKATLEALLEELKPERAAWLEELLEARAAYRDLAL--EELADDGIKPQYVIKVLRELLPDDAIVVTDVG 383 (550)
T ss_pred CCCCCeeEeccHHHHHHHHHHhhhhcchHHHHHHHHHHHhhhhhhh--hccCCCccCHHHHHHHHHHhCCCCeEEEeCCc
Confidence 33332 38999999999988753 2222211 111101100 11112223799999999999999999999999
Q ss_pred cccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCC
Q 007917 416 DSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNG 490 (585)
Q Consensus 416 ~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~ 490 (585)
++..|. ++++..++++++.+.++|+||||+|+|||||++.|+|+||+|+|||||+ ||+|++||++|+++||+||+
T Consensus 384 ~~~~w~a~~~~~~~p~~~~~s~~~GtMG~glPaAIGAkla~P~r~Vv~i~GDG~F~m~~qEL~Ta~r~~lpv~ivv~nN~ 463 (550)
T COG0028 384 QHQMWAARYFDFYRPRRFLTSGGLGTMGFGLPAAIGAKLAAPDRKVVAIAGDGGFMMNGQELETAVRYGLPVKIVVLNNG 463 (550)
T ss_pred HHHHHHHHhcccCCCCcEEcCCCCccccchHHHHHHHHhhCCCCcEEEEEcccHHhccHHHHHHHHHhCCCEEEEEEECC
Confidence 998875 4455556667999999999999999999999999999999999999999 99999999999999999999
Q ss_pred ceeeeee----ecCC--CCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCC
Q 007917 491 GYTIEVE----IHDG--PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 562 (585)
Q Consensus 491 ~~~~~~~----~~~~--~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~ 562 (585)
+|++.++ .+.. ...++.+++|.++|++||+ ++++|++++||+++|+++++ .++|+||||.||++.
T Consensus 464 ~~g~v~~~q~~~~~~~~~~~~~~~~~f~klAea~G~-----~g~~v~~~~el~~al~~al~--~~~p~lidv~id~~~ 534 (550)
T COG0028 464 GYGMVRQWQELFYGGRYSGTDLGNPDFVKLAEAYGA-----KGIRVETPEELEEALEEALA--SDGPVLIDVVVDPEE 534 (550)
T ss_pred ccccchHHHHHhcCCCcceeecCCccHHHHHHHcCC-----eeEEeCCHHHHHHHHHHHHh--CCCCEEEEEEecCcc
Confidence 9999322 2222 2245544349999999999 99999999999999999997 899999999999983
No 3
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=100.00 E-value=4.7e-95 Score=798.22 Aligned_cols=521 Identities=18% Similarity=0.214 Sum_probs=430.0
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhc-Cc-cEEEEeCCcchHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSR-GV-GACVVTFTVGGLS 103 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~t-g~-~v~~~t~GpG~~n 103 (585)
.++++++|++.|+++||+||||+||+++.+|+++|.++++|++|.||||++|+|||+||||+| |+ |||++|+|||++|
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~V~~rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N 81 (588)
T TIGR01504 2 RMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALKAHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 81 (588)
T ss_pred CccHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHH
Confidence 478999999999999999999999999999999997656899999999999999999999999 88 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-
Q 007917 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (585)
Q Consensus 104 ~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (585)
+++||++||.+++|||+|+|+.++...+++. + |..||..+|+++|||+.++.+++++++.|++||+.|.++
T Consensus 82 ~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~~-----~---q~~D~~~~~~~vtk~~~~v~~~~~i~~~i~~A~~~A~~~~ 153 (588)
T TIGR01504 82 MITGLYSASADSIPILCITGQAPRARLHKED-----F---QAVDIAAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGR 153 (588)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCCc-----c---cccCHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHccCC
Confidence 9999999999999999999999988655532 2 345889999999999999999999999999999999986
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHh
Q 007917 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (585)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l 262 (585)
+|||||+||.|++..+.+.. ..+.+. ..... +.+++..+++++++|.+||||+||+|.|+.++++.++|.+|||++
T Consensus 154 ~GPV~l~iP~Dv~~~~~~~~-~~~~~~-~~~~~--~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~ 229 (588)
T TIGR01504 154 PGPVLIDLPFDVQVAEIEFD-PDTYEP-LPVYK--PAATRAQIEKAVEMLNAAERPLIVAGGGVINADAADLLQEFAELT 229 (588)
T ss_pred CCeEEEEeCcchhhcccCCc-cccccc-ccCCC--CCCCHHHHHHHHHHHHhCCCcEEEECCCcchhhhHHHHHHHHHHh
Confidence 69999999999976322111 110000 01101 112456799999999999999999999999999999999999999
Q ss_pred CCCeEEccCCccCCCCCCCCceeeecCCC-CCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeec
Q 007917 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAV-SSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (585)
Q Consensus 263 ~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~-~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~ 341 (585)
++||++|++|||+||++||+++|++ |.. +++.+++++++||+||+||+++++..+..|..+.++.++||||.|+.+++
T Consensus 230 g~PV~tt~~gkg~~p~~hpl~~G~~-g~~~~~~~a~~~l~~aD~iL~lG~~l~~~~t~~~~~~~~~~~~I~id~d~~~i~ 308 (588)
T TIGR01504 230 GVPVIPTLMGWGCIPDDHELMAGMV-GLQTSHRYGNATLLESDFVFGIGNRWANRHTGSVDVYTEGRKFVHVDIEPTQIG 308 (588)
T ss_pred CCCeEEcCccCCCCCCCChhhCcCC-CCCCCcHHHHHHHHhCCEEEEECCCCCccccCcccccCCCCeEEEeeCCHHHhc
Confidence 9999999999999999999999997 543 67888899999999999999999888877765566678999999999887
Q ss_pred CCCcccc----ccHHHHHHHHHHHhccC---c--cchhhhhhc---cCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCE
Q 007917 342 NGPSLGW----VFMADFLSALAKKLRKN---T--TALENYRRI---YVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTA 409 (585)
Q Consensus 342 ~~~~~~~----~~~~~~l~~L~~~l~~~---~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~i 409 (585)
+++..+ .|++.+|++|.+.+... . ..+..|.+. ............+.++++.++++.|++.++++.+
T Consensus 309 -~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l~~d~i 387 (588)
T TIGR01504 309 -RVFAPDLGIVSDAKAALKLLVEVAQELKKAGRLPDRSEWAADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVC 387 (588)
T ss_pred -CcCCCCeEEEeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhCcccccCCCCCcCHHHHHHHHHHhCCCCCE
Confidence 433333 38999999998866321 0 011122110 0000000011233469999999999999999999
Q ss_pred EEecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEE
Q 007917 410 VIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSII 484 (585)
Q Consensus 410 i~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~i 484 (585)
++.|+|++..|. .+++.+++.+|+++.++|+|||++|+|||+++|.|+|+||+++|||||+ ||+|++||++|+++
T Consensus 388 vv~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~pdr~Vv~i~GDG~f~m~~~EL~Ta~r~~lpvv~ 467 (588)
T TIGR01504 388 YVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTIPAALGVCAADPKRNVVALSGDYDFQFMIEELAVGAQHNIPYIH 467 (588)
T ss_pred EEECCcHHHHHHHHhccccCCCcEEeCCccccccchHhHHHhhhhhCCCCcEEEEEcchHhhccHHHHHHHHHhCCCeEE
Confidence 999999987664 4566666667999999999999999999999999999999999999998 99999999999999
Q ss_pred EEEeCCceeeeeee----cCCC-----CC-------CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh-c-
Q 007917 485 FLINNGGYTIEVEI----HDGP-----YN-------VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG-E- 546 (585)
Q Consensus 485 vV~NN~~~~~~~~~----~~~~-----~~-------~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~-~- 546 (585)
||+||++|++.+.. +.+. +. +.+++||.++|++||+ ++.+|++.+||+++|+++++ .
T Consensus 468 iV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~V~~~~eL~~al~~a~~~~~ 542 (588)
T TIGR01504 468 VLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGC-----KAIRVFKPEEIAPAFEQAKALMA 542 (588)
T ss_pred EEEeCCchHHHHHHHHHhcccccceeeccccccccccCCCCCHHHHHHHCCC-----EEEEECCHHHHHHHHHHHHhhcc
Confidence 99999999983211 1111 11 1136999999999999 99999999999999999983 1
Q ss_pred CCCCeEEEEEEcCCCCChH
Q 007917 547 QKDSLCFIEVFVHKDDTSK 565 (585)
Q Consensus 547 ~~~gp~vIeV~v~~~~~~~ 565 (585)
..++|+||||.+++++.++
T Consensus 543 ~~~~p~lIeV~i~~~~~~~ 561 (588)
T TIGR01504 543 EHRVPVVVEVILERVTNIS 561 (588)
T ss_pred cCCCcEEEEEEeccccCCC
Confidence 2689999999999998864
No 4
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=1.2e-94 Score=794.95 Aligned_cols=523 Identities=20% Similarity=0.268 Sum_probs=431.5
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (585)
+++++|+|++.|+++||+||||+||+++.+|+++|.+.++|++|.+|||++|+|||+||+|+||+ |||++|+|||++|+
T Consensus 3 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~ 82 (572)
T PRK08979 3 MLSGASMIVRSLIDEGVKHIFGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGYARATGKVGVVLVTSGPGATNT 82 (572)
T ss_pred cccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHH
Confidence 47899999999999999999999999999999999765579999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-C
Q 007917 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (585)
Q Consensus 105 ~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (585)
++||++||.+++|||+|+|+.++...+++ .+ |..||..+|+++|||+.++.+++++++.|++|++.|.++ +
T Consensus 83 l~gia~A~~~~~Pvl~i~G~~~~~~~~~~-----~~---q~~d~~~~~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~~ 154 (572)
T PRK08979 83 ITGIATAYMDSIPMVVLSGQVPSNLIGND-----AF---QECDMIGISRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRP 154 (572)
T ss_pred HHHHHHHhhcCCCEEEEecCCCccccCCC-----CC---cccchhHHhhhceeEEEecCCHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999998766553 22 345889999999999999999999999999999999996 6
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhC
Q 007917 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (585)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~ 263 (585)
|||||+||.|++..+.+.....+.+....+..+...+.+..+++++++|.+||||+|++|.|++++++.++|++|||+++
T Consensus 155 GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~ 234 (572)
T PRK08979 155 GPVVIDLPKDCLNPAILHPYEYPESIKMRSYNPTTSGHKGQIKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKLN 234 (572)
T ss_pred CcEEEecCHhHhhhhhcccccCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhC
Confidence 99999999999763221100001110001000100123567999999999999999999999998899999999999999
Q ss_pred CCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecCC
Q 007917 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (585)
Q Consensus 264 ~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~~ 343 (585)
+||+||++|||+||++||+++|++ |..+++.+++++++||+||+||+++++..+..|..+.++.++||||.|+.+++ +
T Consensus 235 ~pv~tt~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~~~~aD~vl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~-~ 312 (572)
T PRK08979 235 LPVVSTLMGLGAFPGTHKNSLGML-GMHGRYEANMAMHNADLIFGIGVRFDDRTTNNLEKYCPNATILHIDIDPSSIS-K 312 (572)
T ss_pred CCEEEcccccccCCCCCcccccCC-ccCCCHHHHHHHHhCCEEEEEcCCCCccccCchhhcCCCCeEEEEECCHHHhC-C
Confidence 999999999999999999999997 88889999999999999999999999888766655556678999999999887 4
Q ss_pred Ccccc----ccHHHHHHHHHHHhccCcc-----chhhhh----hccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEE
Q 007917 344 PSLGW----VFMADFLSALAKKLRKNTT-----ALENYR----RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAV 410 (585)
Q Consensus 344 ~~~~~----~~~~~~l~~L~~~l~~~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii 410 (585)
.+..+ .|++.+|++|.+.+..+.. ....|. ......... ......++++.++++.|++.++++.++
T Consensus 313 ~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~l~~~l~~d~iv 391 (572)
T PRK08979 313 TVRVDIPIVGSADKVLDSMLALLDESGETNDEAAIASWWNEIEVWRSRNCLA-YDKSSERIKPQQVIETLYKLTNGDAYV 391 (572)
T ss_pred ccCCceEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhCchh-ccCCCCCcCHHHHHHHHHHhcCCCeEE
Confidence 33333 4899999999887753210 001121 110000000 011234699999999999999999999
Q ss_pred EecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEE
Q 007917 411 IAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIF 485 (585)
Q Consensus 411 ~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~iv 485 (585)
+.|+|++..|. .++..+++.+|+.+.++|+|||++|+|||+++|+|+++||+++|||||+ ||+|++||++|+++|
T Consensus 392 v~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~EL~Ta~r~~lpv~~v 471 (572)
T PRK08979 392 ASDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAAMGVKFAMPDETVVCVTGDGSIQMNIQELSTALQYDIPVKII 471 (572)
T ss_pred EECCcHHHHHHHHhcCcCCCCeEEccCCcccccchhhHHHhhhhhCCCCeEEEEEcchHhhccHHHHHHHHHcCCCeEEE
Confidence 99999987654 4566666677999999999999999999999999999999999999999 999999999999999
Q ss_pred EEeCCceeeeee----ecCCCC--CCC-CCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEc
Q 007917 486 LINNGGYTIEVE----IHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFV 558 (585)
Q Consensus 486 V~NN~~~~~~~~----~~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v 558 (585)
|+||++|++.+. .+.+.+ ..+ .++||.++|++||+ ++++|++.+||+++|+++++ ..++|+||||.+
T Consensus 472 V~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~-----~~~~v~~~~eL~~al~~a~~-~~~~p~lIev~i 545 (572)
T PRK08979 472 NLNNRFLGMVKQWQDMIYQGRHSHSYMDSVPDFAKIAEAYGH-----VGIRISDPDELESGLEKALA-MKDRLVFVDINV 545 (572)
T ss_pred EEeCCccHHHHHHHHHHhCCcccccCCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh-cCCCcEEEEEEe
Confidence 999999998321 122222 122 45899999999999 99999999999999999985 238999999999
Q ss_pred CCCCChH
Q 007917 559 HKDDTSK 565 (585)
Q Consensus 559 ~~~~~~~ 565 (585)
++++.+.
T Consensus 546 ~~~~~~~ 552 (572)
T PRK08979 546 DETEHVY 552 (572)
T ss_pred CCccccC
Confidence 9877543
No 5
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=1.4e-93 Score=720.37 Aligned_cols=547 Identities=40% Similarity=0.637 Sum_probs=491.8
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcchHHH
Q 007917 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSV 104 (585)
Q Consensus 25 ~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~n~ 104 (585)
++++++++|+++|.+.||+++||+||+.|++|+|.|...+++||+.|.||.+|+||||||||.+|.+++++|.|+|.+.+
T Consensus 2 ~~~tvG~YL~~RL~qlgi~~iFGVPGDyNL~lLD~i~~~~~lrWvGn~NELNaaYAADGYaR~~Gi~alvTTfGVGELSA 81 (557)
T COG3961 2 SPITVGDYLFDRLAQLGIKSIFGVPGDYNLSLLDKIYSVPGLRWVGNANELNAAYAADGYARLNGISALVTTFGVGELSA 81 (557)
T ss_pred CceeHHHHHHHHHHhcCCceeeeCCCcccHHHHHHhhcCCCceeecccchhhhhhhhcchhhhcCceEEEEecccchhhh
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCC
Q 007917 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (585)
Q Consensus 105 ~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~g 184 (585)
++||+++|++++|||+|+|-+++..+.++.++||++|+++|..+.+|++++++....+++.+.++..|+|+++.+...++
T Consensus 82 ~NGIAGSYAE~vpVvhIvG~P~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~~~R 161 (557)
T COG3961 82 LNGIAGSYAEHVPVVHIVGVPTTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPREIDRVIRTALKQRR 161 (557)
T ss_pred hcccchhhhhcCCEEEEEcCCCcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCC
Q 007917 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (585)
Q Consensus 185 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~ 264 (585)
||||.+|.|+... +++.+. .|.......+++....+.++.++++|.++|+|+|++|..+.+.+..+++++|++++++
T Consensus 162 PvYI~lP~dva~~--~~~~p~-~Pl~~~~~~sd~e~~~e~i~~i~~lI~~ak~p~ILad~~~~r~~~~~~~~~l~~~t~~ 238 (557)
T COG3961 162 PVYIGLPADVADL--PIEAPL-TPLDLQLKTSDPEALSEVIDTIAELINKAKKPVILADALVSRFGLEKELKKLINATGF 238 (557)
T ss_pred CeEEEcchHHhcC--cCCCCC-CccccccCCCCHHHHHHHHHHHHHHHhccCCcEEecchhhhhhhhHHHHHHHHHhcCC
Confidence 9999999999774 433220 2222222233434556778999999999999999999999999999999999999999
Q ss_pred CeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecCCC
Q 007917 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (585)
Q Consensus 265 Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~~~ 344 (585)
|++++++|||+|+|.||.|+|+|+|..+.+.+++.++.||+||.+|+.|+++++++|+...+..++|+++.+..++. ..
T Consensus 239 p~~~~pmGKg~idEs~P~y~GvY~G~~s~~~vre~vE~aD~il~iG~~ltD~~Tg~Ft~~~~~~~~i~~~~~~v~I~-~~ 317 (557)
T COG3961 239 PVATLPMGKGVIDESHPNYLGVYNGKLSEPEVREAVESADLILTIGVLLTDFNTGGFTYQYKPANIIEIHPDSVKIK-DA 317 (557)
T ss_pred CeEEeecccccccccCCCeeeEEecccCCHHHHHHhhcCCEEEEeceEEeeccccceeeecCcccEEEeccCeeEec-cc
Confidence 99999999999999999999999999999999999999999999999999999999998777789999999998886 56
Q ss_pred ccccccHHHHHHHHHHHhccCccch--hhhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEecCCccccccc
Q 007917 345 SLGWVFMADFLSALAKKLRKNTTAL--ENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQ 422 (585)
Q Consensus 345 ~~~~~~~~~~l~~L~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~~ 422 (585)
.+..+.++.+|+.|...+..+.... .++.... ..........++++.++++.+++++.++++|++|.|+++|+..
T Consensus 318 ~f~~l~m~~~L~~L~~~i~~~~~~~~~~~~~~~~---p~~~~~~~~~pLtq~~~w~~~~~fl~p~dviiaetGtS~FG~~ 394 (557)
T COG3961 318 VFTNLSMKDALQELAKKIDKRNLSAPPVAYPART---PPTPYPPANEPLTQEWLWNTVQNFLKPGDVIIAETGTSFFGAL 394 (557)
T ss_pred ccCCeeHHHHHHHHHHHhhhcccCCCCccCCCCC---CCCCCCCCCCcccHHHHHHHHHhhCCCCCEEEEccccccccce
Confidence 6777889999999999887654211 1111111 0111234456799999999999999999999999999999999
Q ss_pred cccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCCceeeeeee
Q 007917 423 KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNGGYTIEVEI 498 (585)
Q Consensus 423 ~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~~~~~~~~~ 498 (585)
.+.+|++..++++.-||+|||++|+|+|+++|.|+||||+++|||||+ |+.|..|++++.+|+|+||+||.|++.+
T Consensus 395 ~~~lP~~~~~i~Q~lWGSIG~t~pAalGa~~A~~drR~IL~iGDGs~QlTvQEiStmiR~gl~p~ifvlNN~GYTIEr~I 474 (557)
T COG3961 395 DIRLPKGATFISQPLWGSIGYTLPAALGAALAAPDRRVILFIGDGSLQLTVQEISTMIRWGLKPIIFVLNNDGYTIERAI 474 (557)
T ss_pred eeecCCCCeEEcccchhhcccccHhhhhhhhcCCCccEEEEEcCchhhhhHHHHHHHHHcCCCcEEEEEcCCCcEEEehh
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cC--CCCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChHHHHHHHHhhhh
Q 007917 499 HD--GPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSA 576 (585)
Q Consensus 499 ~~--~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~~~~~~~~~~~~~~ 576 (585)
|+ .+|+++.+|||.++.++||+...+. ..++++.++|..+++.+.+ ..+++.+|||+++..|.|+.+.++.+....
T Consensus 475 Hg~~~~YNdI~~Wd~~~l~~afg~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~~i~lIEv~lp~~D~P~~L~~~~~~~a~ 552 (557)
T COG3961 475 HGPTAPYNDIQSWDYTALPEAFGAKNGEA-KFRATTGEELALALDVAFA-NNDRIRLIEVMLPVLDAPELLIDQAKATAA 552 (557)
T ss_pred cCCCcCcccccccchhhhhhhcCCCCceE-EEeecChHHHHHHHHHHhc-CCCceEEEEEecCcccCCHHHHHHHHhhhh
Confidence 96 6899999999999999999954332 2788999999999999985 567899999999999999999999999988
Q ss_pred hcCC
Q 007917 577 ANSR 580 (585)
Q Consensus 577 ~~~~ 580 (585)
+|++
T Consensus 553 ~n~k 556 (557)
T COG3961 553 QNNK 556 (557)
T ss_pred hhcC
Confidence 8754
No 6
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=100.00 E-value=8.2e-93 Score=775.75 Aligned_cols=528 Identities=34% Similarity=0.522 Sum_probs=439.1
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcchHHHHH
Q 007917 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLN 106 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~ 106 (585)
+|++++|++.|+++||++|||+||+++++|+++|.+.++|++|.+|||++|+|||+||+|+||++||++|+|||++|+++
T Consensus 1 ~t~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdgyar~tg~gv~~~t~GPG~~n~~~ 80 (539)
T TIGR03393 1 YTVGDYLLDRLTDIGIDHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNAAYAADGYARCKGAAALLTTFGVGELSAIN 80 (539)
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhhCCCCcEeccCCcccHHHHhhhhhhhcCceEEEEecCccHHHHhh
Confidence 37899999999999999999999999999999997656899999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCCcE
Q 007917 107 AIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPV 186 (585)
Q Consensus 107 gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV 186 (585)
||++||.+++|||+|+|+.++...+++...|+..+...+.+..++++++|||+..+ +++++++.+++|++.|.+++|||
T Consensus 81 gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~itk~~~~~-~~~~~~~~i~~a~~~A~~~~gPv 159 (539)
T TIGR03393 81 GIAGSYAEHLPVIHIVGAPGTAAQQRGELLHHTLGDGDFRHFYRMAAEVTVAQAVL-TEQNATAEIDRVITTALRERRPG 159 (539)
T ss_pred HHHHHhhccCCEEEEECCCCcchhhcCceeeeecCCCchHHHHHHhhceEEEEEEe-ChhhhHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998876666667776665444555678999999999866 78999999999999999988999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCe
Q 007917 187 YISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (585)
Q Consensus 187 ~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv 266 (585)
||+||.|++.. +.+... .+............++..+++++++|.+||||+|++|+|+.++++.+++.+|||++++||
T Consensus 160 ~l~iP~Dv~~~--~~~~~~-~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~pv 236 (539)
T TIGR03393 160 YLMLPVDVAAK--AVTPPV-NPLVTHKPAHADSALRAFRDAAENKLAMAKRVSLLADFLALRHGLKHALQKWVKEVPMPH 236 (539)
T ss_pred EEEecccccCC--ccCCCC-cccCcCCCCCChHHHHHHHHHHHHHHHhCCCCEEEeChhhcccChHHHHHHHHHHhCCCE
Confidence 99999999764 222111 111010011111222345899999999999999999999998899999999999999999
Q ss_pred EEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecCCCcc
Q 007917 267 AIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSL 346 (585)
Q Consensus 267 ~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~~~~~ 346 (585)
++|++|||+||++||+++|.+.|..+.+.+++++++||+||+||+++++..+.+|....+..++|+||+|+..++ +.+.
T Consensus 237 ~tt~~gkg~~~~~hpl~lG~~~g~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~~~~~~~-~~~~ 315 (539)
T TIGR03393 237 ATLLMGKGILDEQQAGFYGTYSGSASTGAVKEAIEGADAVICVGVRFTDTITAGFTHQLTPEQTIDVQPHAARVG-NVWF 315 (539)
T ss_pred EECcccCccccCcCCCeEEEEeCCCCCHHHHHHHhhCCEEEEECCcccccccceeeccCCcccEEEEcCCeEEEC-ceEe
Confidence 999999999999999999998677778889999999999999999999888766653223357999999998887 3333
Q ss_pred cc---ccHHHHHHHHHHHhccCccchhhhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEecCCcccccccc
Q 007917 347 GW---VFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQK 423 (585)
Q Consensus 347 ~~---~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~~~ 423 (585)
.+ .|+..+|++|.+.+... |...... +... ......++++..+++.|++.++++++++.|.|++.++..+
T Consensus 316 ~~~~i~D~~~~l~~l~~~l~~~---~~~~~~~--~~~~--~~~~~~~l~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~ 388 (539)
T TIGR03393 316 TGIPMNDAIETLVELCEHAGLM---WSSSGAI--PFPQ--PDESRSALSQENFWQTLQTFLRPGDIILADQGTSAFGAAD 388 (539)
T ss_pred CCcCHHHHHHHHHHHhhhcccc---ccccccc--CcCC--CCCCCCccCHHHHHHHHHHhcCCCCEEEEccCchhhhhhh
Confidence 33 46778888887766321 1111000 1000 1112246999999999999999999999999998755556
Q ss_pred ccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCCceeeeeeec
Q 007917 424 LRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNGGYTIEVEIH 499 (585)
Q Consensus 424 ~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~~~~~~~~~~ 499 (585)
+..+.+.+++.+.++|+|||++|+|||+++|.|+|+|||++|||||+ ||+|++||++|+++||+||++|++.+..+
T Consensus 389 ~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~ 468 (539)
T TIGR03393 389 LRLPADVNFIVQPLWGSIGYTLPAAFGAQTACPNRRVILLIGDGSAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIH 468 (539)
T ss_pred ccCCCCCeEEechhhhhhhhHHHHHHHHHhcCCCCCeEEEEcCcHHHhHHHHHHHHHHcCCCCEEEEEeCCceEEEEeec
Confidence 66777667999999999999999999999999999999999999999 99999999999999999999999955433
Q ss_pred --CCCCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChHHHHH
Q 007917 500 --DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLE 569 (585)
Q Consensus 500 --~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~~~~~~~ 569 (585)
...|.+++++||.++|++||+. +++++++|++.+||+++|+++++ .++|+||||.+++++.|+.+..
T Consensus 469 ~~~~~~~~~~~~df~~la~a~G~~-~~~~~~~v~~~~el~~al~~a~~--~~~p~liev~i~~~~~p~~~~~ 537 (539)
T TIGR03393 469 GAEQRYNDIALWNWTHLPQALSLD-PQSECWRVSEAEQLADVLEKVAA--HERLSLIEVVLPKADIPPLLGA 537 (539)
T ss_pred CCCCCcCcCCCCCHHHHHHHcCCC-CccceEEeccHHHHHHHHHHHhc--cCCeEEEEEEcCcccCCHHHHh
Confidence 2356677889999999999981 12248999999999999999996 8999999999999999987654
No 7
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=3.3e-94 Score=792.96 Aligned_cols=536 Identities=21% Similarity=0.272 Sum_probs=436.7
Q ss_pred cCCCCCCCCccccccccCCcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhh
Q 007917 7 MGSTGQPGSAPAPVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYAR 86 (585)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar 86 (585)
-=||.+.-++| ...++++++|++.|+++||+||||+||+++.+|+++|.+.++|++|.||||++|+|||+||+|
T Consensus 7 ~~~~~~~~~~~------~~~~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~AdgYar 80 (587)
T PRK06965 7 EFSTAESLSPP------AADSIGAEILMKALAAEGVEFIWGYPGGAVLYIYDELYKQDKIQHVLVRHEQAAVHAADGYAR 80 (587)
T ss_pred ccccccccCCC------chhccHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHH
Confidence 34555555544 335678899999999999999999999999999999976567999999999999999999999
Q ss_pred hcCc-cEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCc
Q 007917 87 SRGV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNL 165 (585)
Q Consensus 87 ~tg~-~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~ 165 (585)
++|+ +||++|+|||++|+++||++||.+++|||+|+|+.+....+++ .+ |..||..+|+++|||+.++.++
T Consensus 81 ~tg~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~---q~~d~~~l~~~itk~~~~v~~~ 152 (587)
T PRK06965 81 ATGKVGVALVTSGPGVTNAVTGIATAYMDSIPMVVISGQVPTAAIGQD-----AF---QECDTVGITRPIVKHNFLVKDV 152 (587)
T ss_pred HhCCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccCCC-----Cc---ccccHHHHhcCCcceeEEeCCH
Confidence 9999 9999999999999999999999999999999999998866654 22 3468999999999999999999
Q ss_pred chhHHHHHHHHHHhhhc-CCcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCc
Q 007917 166 GDAHELIDTAISTALKE-SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGP 244 (585)
Q Consensus 166 ~~~~~~l~~A~~~a~~~-~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~ 244 (585)
+++++.|++|++.|.++ +|||||+||.|++..+ .....+.+...........+.++.+++++++|.+||||+||+|.
T Consensus 153 ~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~ 230 (587)
T PRK06965 153 RDLAETVKKAFYIARTGRPGPVVVDIPKDVSKTP--CEYEYPKSVEMRSYNPVTKGHSGQIRKAVSLLLSAKRPYIYTGG 230 (587)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEeChhhhhCh--hccccCccccccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 99999999999999997 6999999999997642 21111111000000000012456799999999999999999999
Q ss_pred ccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCccccccccc
Q 007917 245 NIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLL 324 (585)
Q Consensus 245 g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~ 324 (585)
|++++++.+++++|+|++|+||++|++|||+||++||+++|++ |..+++.+++++++||+||+||+++++..+..+..+
T Consensus 231 g~~~~~a~~~l~~lae~~g~pv~tt~~gkg~~~~~hpl~~G~~-G~~~~~~a~~~~~~aDlvl~lG~~~~~~~~~~~~~~ 309 (587)
T PRK06965 231 GVILANASRELRQLADLLGYPVTNTLMGLGAYPASDKKFLGML-GMHGTYEANMAMQHCDVLIAIGARFDDRVIGNPAHF 309 (587)
T ss_pred CccccchHHHHHHHHHHhCCCEEEccccCCCCCCCChhhcCCC-CCCCCHHHHHHHHhCCEEEEECCCCcccccCChhhc
Confidence 9999899999999999999999999999999999999999997 888888999999999999999999988876544334
Q ss_pred C-CCcceEEEcCCceeecCCCcccc----ccHHHHHHHHHHHhccCc-----cchhhhh----hccCCCCCCCCCCCCCC
Q 007917 325 I-KKEKAIIVQPHRVTVGNGPSLGW----VFMADFLSALAKKLRKNT-----TALENYR----RIYVPPGIPVKRAQNEP 390 (585)
Q Consensus 325 ~-~~~~~i~id~~~~~~~~~~~~~~----~~~~~~l~~L~~~l~~~~-----~~~~~~~----~~~~~~~~~~~~~~~~~ 390 (585)
. ++.++||||.|+..++ +.+..+ .|++.+|++|.+.+.... .....|. +...... ........+
T Consensus 310 ~~~~~~~i~id~d~~~~~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 387 (587)
T PRK06965 310 ASRPRKIIHIDIDPSSIS-KRVKVDIPIVGDVKEVLKELIEQLQTAEHGPDADALAQWWKQIEGWRSRDC-LKYDRESEI 387 (587)
T ss_pred CCCCceEEEEeCCHHHhC-CcCCCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhCh-hhccccCCC
Confidence 3 3468999999998886 332222 488999999988774321 0111221 1100000 000112346
Q ss_pred CCHHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchh
Q 007917 391 LRVNVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF 469 (585)
Q Consensus 391 ~~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf 469 (585)
+++.++++.|++.+|++++++.|+|++..|. .++..+++.+|+.+.++|+|||++|+|||+++|+|+|+||+++|||||
T Consensus 388 i~~~~~~~~l~~~l~~d~ii~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDGsf 467 (587)
T PRK06965 388 IKPQYVVEKLWELTDGDAFVCSDVGQHQMWAAQFYRFNEPRRWINSGGLGTMGVGLPYAMGIKMAHPDDDVVCITGEGSI 467 (587)
T ss_pred cCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchhh
Confidence 9999999999999999999999999987654 456666667799999999999999999999999999999999999999
Q ss_pred H----hHHHHHHhCCCeEEEEEeCCceeeeeee----cCCCC--CCC-CCCCHHHHHHHhcCCCCCccEEEecCHHHHHH
Q 007917 470 Q----EISTMIRCGQRSIIFLINNGGYTIEVEI----HDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTE 538 (585)
Q Consensus 470 ~----eL~ta~~~~lpv~ivV~NN~~~~~~~~~----~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~ 538 (585)
+ ||+|++||++|+++||+||++|++.+.. +.+.+ ..+ ..+||.++|++||+ ++++|++.+||++
T Consensus 468 ~m~~~eL~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~-----~~~~v~~~~eL~~ 542 (587)
T PRK06965 468 QMCIQELSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSKRYSHSYMDALPDFVKLAEAYGH-----VGMRIEKTSDVEP 542 (587)
T ss_pred hcCHHHHHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCCCccccCCCCCCCHHHHHHHCCC-----EEEEECCHHHHHH
Confidence 9 9999999999999999999999983211 22222 223 36899999999999 9999999999999
Q ss_pred HHHHhhhcCCCCeEEEEEEcCCCCChHHH
Q 007917 539 AMKTATGEQKDSLCFIEVFVHKDDTSKEL 567 (585)
Q Consensus 539 al~~a~~~~~~gp~vIeV~v~~~~~~~~~ 567 (585)
+|++|++ ..++|+||||.+++++.+.++
T Consensus 543 al~~a~~-~~~~p~lieV~i~~~~~~~p~ 570 (587)
T PRK06965 543 ALREALR-LKDRTVFLDFQTDPTENVWPM 570 (587)
T ss_pred HHHHHHh-cCCCcEEEEEEeccccccCCc
Confidence 9999985 237899999999988865443
No 8
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=5.9e-94 Score=790.47 Aligned_cols=525 Identities=19% Similarity=0.254 Sum_probs=432.5
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHH
Q 007917 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (585)
Q Consensus 25 ~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (585)
++++++|+|++.|+++||++|||+||+.+.+|++++.+.++|++|.||||++|+|||+||+|+||+ |||++|+|||++|
T Consensus 2 ~~~~~a~~l~~~L~~~Gv~~vFgvpG~~~~~l~d~l~~~~~i~~i~~rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n 81 (574)
T PRK07979 2 EMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATN 81 (574)
T ss_pred CcccHHHHHHHHHHHcCCCEEEEccCcchHHHHHHHHhcCCceEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCccHhh
Confidence 357899999999999999999999999999999999754579999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-
Q 007917 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (585)
Q Consensus 104 ~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (585)
+++||++|+.+++|||+|+|+.+....+++ .+ |..|+..+++++|||+.++++++++++.|++||+.|.++
T Consensus 82 ~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~---q~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~ 153 (574)
T PRK07979 82 AITGIATAYMDSIPLVVLSGQVATSLIGYD-----AF---QECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGR 153 (574)
T ss_pred hHHHHHHHhhcCCCEEEEECCCChhccCCC-----CC---ceecHHHHhhcccceEEEeCCHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999998866654 22 235889999999999999999999999999999999997
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHh
Q 007917 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (585)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l 262 (585)
+|||||+||.|++..+.+.....+.+...........++++.+++++++|.+|+||+|++|.|+.++++.++|++|||++
T Consensus 154 ~GPv~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~ 233 (574)
T PRK07979 154 PGPVVVDLPKDILNPANKLPYVWPESVSMRSYNPTTQGHKGQIKRALQTLVAAKKPVVYVGGGAINAACHQQLKELVEKL 233 (574)
T ss_pred CCcEEEEcChhhhhhhhccccccCcccccccCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHh
Confidence 69999999999975321110000111000000011112456799999999999999999999999889999999999999
Q ss_pred CCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecC
Q 007917 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (585)
Q Consensus 263 ~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~ 342 (585)
++||++|++|||+||++||+++|++ |..++..+++++++||+||+||+++++..+..|..+.++.++||||.|+.+++
T Consensus 234 ~~pv~tt~~gkg~~p~~hp~~~G~~-G~~~~~~~~~~l~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~- 311 (574)
T PRK07979 234 NLPVVSSLMGLGAFPATHRQSLGML-GMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSIS- 311 (574)
T ss_pred CCCEEEccccCCCCCCCCcccccCC-cCCCCHHHHHHHHhCCEEEEeCCCCcccccCChhhcCCCCeEEEEECCHHHhC-
Confidence 9999999999999999999999996 88888999999999999999999999888766655556678999999999887
Q ss_pred CCcccc----ccHHHHHHHHHHHhccCc-----cchhhhh----hccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCE
Q 007917 343 GPSLGW----VFMADFLSALAKKLRKNT-----TALENYR----RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTA 409 (585)
Q Consensus 343 ~~~~~~----~~~~~~l~~L~~~l~~~~-----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~i 409 (585)
+.+..+ .|++.+|++|++.+.... .....|. +...... ........++++.+++++|++.++++++
T Consensus 312 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~l~~~l~~d~i 390 (574)
T PRK07979 312 KTVTADIPIVGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRARQC-LKYDTHSEKIKPQAVIETLWRLTKGDAY 390 (574)
T ss_pred CcccCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhCh-hhccCCCCCcCHHHHHHHHHhhcCCCEE
Confidence 433333 489999999988775321 0111121 1100000 0001123469999999999999999999
Q ss_pred EEecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEE
Q 007917 410 VIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSII 484 (585)
Q Consensus 410 i~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~i 484 (585)
++.|+|++..|. .++..+++.+|+.+.++|+|||++|+|||+++|+|+++||+++|||||+ ||+|++||++|+++
T Consensus 391 vv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~r~~l~v~i 470 (574)
T PRK07979 391 VTSDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLV 470 (574)
T ss_pred EEeCCcHHHHHHHHhcccCCCCeEEeCCCccchhhHHHHHHHHHHhCCCCeEEEEEcchhhhccHHHHHHHHHhCCCeEE
Confidence 999999987654 5566666667999999999999999999999999999999999999999 99999999999999
Q ss_pred EEEeCCceeeeee----ecCCCC--CCC-CCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh-cCCCCeEEEEE
Q 007917 485 FLINNGGYTIEVE----IHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG-EQKDSLCFIEV 556 (585)
Q Consensus 485 vV~NN~~~~~~~~----~~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~-~~~~gp~vIeV 556 (585)
||+||++|++.+. .+.+.+ ..+ +++||.++|++||+ ++++|++.+||+++|+++++ .+.++|+||||
T Consensus 471 vV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~-----~g~~v~~~~eL~~al~~a~~~~~~~~p~lIeV 545 (574)
T PRK07979 471 LNLNNRYLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGH-----VGIQISHPDELESKLSEALEQVRNNRLVFVDV 545 (574)
T ss_pred EEEeCchhhHHHHHHHHhcCCccccccCCCCCCHHHHHHHCCC-----EEEEECCHHHHHHHHHHHHhccCCCCcEEEEE
Confidence 9999999998321 122222 222 45899999999999 99999999999999999986 11389999999
Q ss_pred EcCCCCChH
Q 007917 557 FVHKDDTSK 565 (585)
Q Consensus 557 ~v~~~~~~~ 565 (585)
.+++++.++
T Consensus 546 ~i~~~~~~~ 554 (574)
T PRK07979 546 TVDGSEHVY 554 (574)
T ss_pred EECCccCcC
Confidence 999877553
No 9
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=1.3e-93 Score=787.93 Aligned_cols=521 Identities=20% Similarity=0.283 Sum_probs=430.3
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHH
Q 007917 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (585)
Q Consensus 25 ~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (585)
..++++++|++.|+++||++|||+||+++.+|+++|.+.++|++|.||||++|+|||+||+|+||+ +||++|+|||++|
T Consensus 9 ~~~t~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~I~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N 88 (595)
T PRK09107 9 RQMTGAEMVVQALKDQGVEHIFGYPGGAVLPIYDEIFQQDDIQHILVRHEQGAGHAAEGYARSTGKPGVVLVTSGPGATN 88 (595)
T ss_pred hhhhHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhhcCCCeEEEECChHHHHHHHHHHHHHhCCCEEEEECCCccHhH
Confidence 457999999999999999999999999999999999765689999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-
Q 007917 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (585)
Q Consensus 104 ~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (585)
+++||++||.+++|||+|+|+.++...+.+ .+ |..||..+++++|||++++.+++++++.|++|++.|+++
T Consensus 89 ~l~gia~A~~~~~Pvl~i~G~~~~~~~~~~-----~~---q~~d~~~l~~~vtk~~~~v~~~~~i~~~l~~A~~~A~s~~ 160 (595)
T PRK09107 89 AVTPLQDALMDSIPLVCITGQVPTHLIGSD-----AF---QECDTVGITRPCTKHNWLVKDVNDLARVIHEAFHVATSGR 160 (595)
T ss_pred HHHHHHHHhhcCCCEEEEEcCCChhhcCCC-----CC---cccchhhhhhhheEEEEEeCCHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999998766553 22 346889999999999999999999999999999999997
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhc--hHHHHHHHHH
Q 007917 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAK--AQKAFIELAD 260 (585)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~--a~~~l~~lae 260 (585)
+|||||+||.|++..+.+...+...+. ..+......++++.+++++++|.+|+||+||+|.|+.+++ +.+++++|||
T Consensus 161 ~GPV~l~iP~Dv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~a~~~L~~A~rPvil~G~g~~~~~~~a~~~l~~lae 239 (595)
T PRK09107 161 PGPVVVDIPKDVQFATGTYTPPQKAPV-HVSYQPKVKGDAEAITEAVELLANAKRPVIYSGGGVINSGPEASRLLRELVE 239 (595)
T ss_pred CceEEEecCCChhhccccccccccccc-ccCCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCcccccchhHHHHHHHHHH
Confidence 699999999999763211101110000 0000011122456799999999999999999999998775 8999999999
Q ss_pred HhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceee
Q 007917 261 ATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTV 340 (585)
Q Consensus 261 ~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~ 340 (585)
++|+||++|++|||+||++||+++|++ |..++..+++++++||+||+||+++++..+..|..+.++.++||||.|+.++
T Consensus 240 ~lg~pv~tt~~gkg~~p~~hpl~~G~~-G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~i 318 (595)
T PRK09107 240 LTGFPITSTLMGLGAYPASGKNWLGML-GMHGTYEANMAMHDCDVMLCVGARFDDRITGRLDAFSPNSKKIHIDIDPSSI 318 (595)
T ss_pred HHCCCEEECccccccCCCCCCcccCCC-CCCccHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHh
Confidence 999999999999999999999999997 7788888999999999999999999988876665556667899999999988
Q ss_pred cCCCcccc----ccHHHHHHHHHHHhccCc-----cchhhhhh----ccCCCCCCCCCCCCCCCCHHHHHHHHHhhCC-C
Q 007917 341 GNGPSLGW----VFMADFLSALAKKLRKNT-----TALENYRR----IYVPPGIPVKRAQNEPLRVNVLFKHIQDMLS-G 406 (585)
Q Consensus 341 ~~~~~~~~----~~~~~~l~~L~~~l~~~~-----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~-~ 406 (585)
+ +.+..+ .|++.+|++|.+.+.... .....|.+ ........ ......++++.++++.|++.++ +
T Consensus 319 ~-~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~l~~~ 396 (595)
T PRK09107 319 N-KNVRVDVPIIGDVGHVLEDMLRLWKARGKKPDKEALADWWGQIARWRARNSLA-YTPSDDVIMPQYAIQRLYELTKGR 396 (595)
T ss_pred C-CCCCCCeEEecCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhChhh-ccCCCCCcCHHHHHHHHHHhCCCC
Confidence 7 333222 489999999988775321 00112211 11000000 0112346999999999999997 5
Q ss_pred CCEEEecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCC
Q 007917 407 DTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQR 481 (585)
Q Consensus 407 ~~ii~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lp 481 (585)
+.+++.|+|++..|. .+++.+++.+|+.+.++|+|||++|+|||+++|+|+|+||+++|||||+ ||+|++||++|
T Consensus 397 d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDG~f~m~~~EL~Ta~r~~lp 476 (595)
T PRK09107 397 DTYITTEVGQHQMWAAQFFGFEEPNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDIAGDASIQMCIQEMSTAVQYNLP 476 (595)
T ss_pred CeEEEECCcHHHHHHHHhcccCCCCeEEcCCCchhhhhhHHHHHHHHHhCCCCeEEEEEcCchhhccHHHHHHHHHhCCC
Confidence 888999999987664 4566667777999999999999999999999999999999999999999 99999999999
Q ss_pred eEEEEEeCCceeeee----eecCCCCC--CC-CCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEE
Q 007917 482 SIIFLINNGGYTIEV----EIHDGPYN--VI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFI 554 (585)
Q Consensus 482 v~ivV~NN~~~~~~~----~~~~~~~~--~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vI 554 (585)
+++||+||++|++.+ ..+...+. .. .++||.++|++||+ ++++|++++||+++|+++++ .++|+||
T Consensus 477 vi~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~lI 549 (595)
T PRK09107 477 VKIFILNNQYMGMVRQWQQLLHGNRLSHSYTEAMPDFVKLAEAYGA-----VGIRCEKPGDLDDAIQEMID--VDKPVIF 549 (595)
T ss_pred eEEEEEeCCccHHHHHHHHHHhCCccccccCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCEEE
Confidence 999999999999832 11232222 12 35899999999999 99999999999999999986 7899999
Q ss_pred EEEcCCCCCh
Q 007917 555 EVFVHKDDTS 564 (585)
Q Consensus 555 eV~v~~~~~~ 564 (585)
||.+++.+.+
T Consensus 550 eV~i~~~~~~ 559 (595)
T PRK09107 550 DCRVANLENC 559 (595)
T ss_pred EEEecCcccc
Confidence 9999987643
No 10
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=1.8e-93 Score=786.67 Aligned_cols=521 Identities=21% Similarity=0.310 Sum_probs=430.6
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHH
Q 007917 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (585)
Q Consensus 25 ~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (585)
++++++++|++.|+++||++|||+||+++.+|+++|.++++|++|.+|||++|+||||||||+||+ +||++|+|||++|
T Consensus 2 ~~~~~a~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N 81 (574)
T PRK06466 2 ELLSGAEMLVRALRDEGVEYIYGYPGGAVLHIYDALFKQDKVEHILVRHEQAATHMADGYARATGKTGVVLVTSGPGATN 81 (574)
T ss_pred CcccHHHHHHHHHHHcCCCEEEECCCcchhHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence 357899999999999999999999999999999999765689999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-
Q 007917 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (585)
Q Consensus 104 ~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (585)
+++||++|+.+++|||+|+|+.++...+++. .|..||..+|+++|||+.++.+++++++.+++|++.|.++
T Consensus 82 ~l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~--------~q~~d~~~l~~~itk~s~~v~~~~~~~~~~~rA~~~A~~~~ 153 (574)
T PRK06466 82 AITGIATAYMDSIPMVVLSGQVPSTLIGEDA--------FQETDMVGISRPIVKHSFMVKHASEIPEIIKKAFYIAQSGR 153 (574)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCccccCCCc--------ccccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999988665532 2346889999999999999999999999999999999997
Q ss_pred CCcEEEEecCCCCCCCCCCC--CCCCCCcc-CCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHH
Q 007917 183 SKPVYISISCNLPGIPHPTF--ARDPVPFF-LAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELA 259 (585)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~la 259 (585)
||||||+||.|++....+.. ...+.+.. ..+.. .+.++.+++++++|.+||||+|++|.|+.++++.++|.+||
T Consensus 154 ~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~la 230 (574)
T PRK06466 154 PGPVVVDIPKDMTNPAEKFEYEYPKKVKLRSYSPAV---RGHSGQIRKAVEMLLAAKRPVIYSGGGVVLGNASALLTELA 230 (574)
T ss_pred CCcEEEEcCHhHhhhhhccccccCcccccccCCCCC---CCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHH
Confidence 69999999999964211110 00111100 01110 12345789999999999999999999999889999999999
Q ss_pred HHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCcee
Q 007917 260 DATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVT 339 (585)
Q Consensus 260 e~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~ 339 (585)
|++++||++|++|||+||++||+++|++ |..++..+++++++||+||+||+++++..+..|..+.++.++||||.|+.+
T Consensus 231 e~~g~pv~tt~~~kg~~~~~hp~~~G~~-G~~~~~~~~~~l~~aD~il~vG~~~~~~~~~~~~~~~~~~~vi~id~d~~~ 309 (574)
T PRK06466 231 HLLNLPVTNTLMGLGGFPGTDRQFLGML-GMHGTYEANMAMHHADVILAVGARFDDRVTNGPAKFCPNAKIIHIDIDPAS 309 (574)
T ss_pred HHhCCCEEEcCccCCCCCCCChhhcCCC-ccccCHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHH
Confidence 9999999999999999999999999997 778888899999999999999999998887766655556689999999998
Q ss_pred ecCCCcccc----ccHHHHHHHHHHHhccCc-----cchhhhh----hccCCCCC-CCCCCCCCCCCHHHHHHHHHhhCC
Q 007917 340 VGNGPSLGW----VFMADFLSALAKKLRKNT-----TALENYR----RIYVPPGI-PVKRAQNEPLRVNVLFKHIQDMLS 405 (585)
Q Consensus 340 ~~~~~~~~~----~~~~~~l~~L~~~l~~~~-----~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~~l~ 405 (585)
++ +.+..+ .|++.+|++|.+.++... ..+..|. +.+..... ......+.++++.++++.|++.++
T Consensus 310 i~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~ 388 (574)
T PRK06466 310 IS-KTIKADIPIVGPVESVLTEMLAILKEIGEKPDKEALAAWWKQIDEWRGRHGLFPYDKGDGGIIKPQQVVETLYEVTN 388 (574)
T ss_pred hC-CccCCCeEEecCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHhCcchhcccCCCCCcCHHHHHHHHHhhCC
Confidence 87 333223 488999999988764321 1111221 11101000 001112346999999999999999
Q ss_pred CCCEEEecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCC
Q 007917 406 GDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQ 480 (585)
Q Consensus 406 ~~~ii~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~l 480 (585)
++.+++.|+|++..|. .++..+++.+|+.++++|+|||++|+|||+++|.|+|+||+++|||||+ ||+|++||++
T Consensus 389 ~~~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~~eL~Ta~r~~l 468 (574)
T PRK06466 389 GDAYVTSDVGQHQMFAAQYYKFNKPNRWINSGGLGTMGFGLPAAMGVKLAFPDQDVACVTGEGSIQMNIQELSTCLQYGL 468 (574)
T ss_pred CCeEEEECCcHHHHHHHHhccccCCCcEEcCCCcchhhchHHHHHHHHHhCCCCeEEEEEcchhhhccHHHHHHHHHhCC
Confidence 9999999999987654 4555666667999999999999999999999999999999999999999 9999999999
Q ss_pred CeEEEEEeCCceeeeee----ecCCCC--CCC-CCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCC-CCeE
Q 007917 481 RSIIFLINNGGYTIEVE----IHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQK-DSLC 552 (585)
Q Consensus 481 pv~ivV~NN~~~~~~~~----~~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~-~gp~ 552 (585)
|+++||+||++|++.+. .+++.+ ..+ ..+||.++|++||+ ++.+|++.+||+++|+++++ . ++|+
T Consensus 469 pv~ivV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~el~~al~~a~~--~~~~p~ 541 (574)
T PRK06466 469 PVKIINLNNGALGMVRQWQDMQYEGRHSHSYMESLPDFVKLAEAYGH-----VGIRITDLKDLKPKLEEAFA--MKDRLV 541 (574)
T ss_pred CeEEEEEeCCccHHHHHHHHHhcCCceeecCCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--cCCCcE
Confidence 99999999999998321 123322 222 45899999999999 99999999999999999985 4 8999
Q ss_pred EEEEEcCCCCChH
Q 007917 553 FIEVFVHKDDTSK 565 (585)
Q Consensus 553 vIeV~v~~~~~~~ 565 (585)
||||.+++++.+.
T Consensus 542 lIev~i~~~~~~~ 554 (574)
T PRK06466 542 FIDIYVDRSEHVY 554 (574)
T ss_pred EEEEEeCCccccC
Confidence 9999999877543
No 11
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=100.00 E-value=3.4e-92 Score=767.28 Aligned_cols=522 Identities=25% Similarity=0.401 Sum_probs=426.7
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHHH
Q 007917 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLN 106 (585)
Q Consensus 28 ~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~ 106 (585)
+.+++|++.|+++||++|||+||+++.+|+++|.+.++|++|.||||++|+|||+||||+||+ +||++|+|||++|+++
T Consensus 1 ~~~~~l~~~L~~~Gv~~vFGvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~ 80 (535)
T TIGR03394 1 KLAEALLRALKDRGAQEMFGIPGDFALPFFKVIEETGILPLHTLSHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVN 80 (535)
T ss_pred CHHHHHHHHHHHcCCCEEEECCCcccHHHHHHHhhCCCCeEEcccCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhh
Confidence 468999999999999999999999999999999765459999999999999999999999999 9999999999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCCcE
Q 007917 107 AIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPV 186 (585)
Q Consensus 107 gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV 186 (585)
||++||.+++|||+|+|+.++...+++..+|+..+ +..+|.++|+++|||+.++.+++++++.+++|++.|.++||||
T Consensus 81 gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~vtk~~~~v~~~~~~~~~~~~A~~~a~~~~gPv 158 (535)
T TIGR03394 81 AIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGR--TLDSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSARELSRPV 158 (535)
T ss_pred HHHHHhhcCCCEEEEECCCCcccccCCceeEeecc--chHHHHHhhhhheEEEEEeCChHHhHHHHHHHHHHHHHCCCCE
Confidence 99999999999999999999887777655544321 2335889999999999999999999999999999999988999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCe
Q 007917 187 YISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (585)
Q Consensus 187 ~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv 266 (585)
||+||.|++..+ .+..... ...+......+..+++++++|.+||||+|++|+|+.++++.+++++|||++|+||
T Consensus 159 ~i~iP~Dv~~~~--~~~~~~~----~~~~~~~~~~~~~v~~~~~~l~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pv 232 (535)
T TIGR03394 159 YLEIPRDMVNAE--VEPVPDD----PAWPVDRDALDACADEVLARMRSATSPVMMVCVEVRRYGLEAKVAELAQRLGVPV 232 (535)
T ss_pred EEEechhhccCc--cCCCCCC----CCCCCChHHHHHHHHHHHHHHHhCCCCEEEEChhhcccCcHHHHHHHHHHhCCCE
Confidence 999999997643 2211111 1111112234567899999999999999999999999899999999999999999
Q ss_pred EEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecCCCcc
Q 007917 267 AIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSL 346 (585)
Q Consensus 267 ~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~~~~~ 346 (585)
+||++|||+||++||+++|.+.|..+++.+++++++||+||+||+++++..+..+..+.++.++||||.|+.+++ .++.
T Consensus 233 ~tT~~gkg~~pe~hpl~~G~~~G~~~~~~~~~~l~~aDliL~iG~~l~~~~~~~~~~~~~~~~~I~id~~~~~~~-~~~~ 311 (535)
T TIGR03394 233 VTTFMGRGLLADAPTPPLGTYLGVAGDAELSRLVEESDGLLLLGVILSDTNFAVSQRKIDLRRTIHAFDRAVTLG-YHVY 311 (535)
T ss_pred EEccccCcCCCCCCccccccccCCCCCHHHHHHHHhCCEEEEECCcccccccccccccCCCCcEEEEeCCEEEEC-CeeE
Confidence 999999999999999999977788899999999999999999999998875533333344568999999999887 5555
Q ss_pred ccccHHHHH---HHHHHHhccCccchhhhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCC--CEEEecCCcccccc
Q 007917 347 GWVFMADFL---SALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGD--TAVIAETGDSWFNC 421 (585)
Q Consensus 347 ~~~~~~~~l---~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~--~ii~~d~G~~~~~~ 421 (585)
.++.+.++. .+|.+.+...... .+.... ............++++.++++.|++.++++ .+++.|+|++.++.
T Consensus 312 ~~~~i~d~~~~L~~l~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~i~p~~~~~~l~~~l~~~~~~ii~~D~G~~~~~~ 388 (535)
T TIGR03394 312 ADIPLAGLVDALLALLCGLPPSDRT--TRGKGP-HAYPRGLQADAEPIAPMDIARAVNDRFARHGQMPLAADIGDCLFTA 388 (535)
T ss_pred CCccHHHHHHHHHHhhhcccccccc--cccccc-cccccccCCCCCCcCHHHHHHHHHHHhCCCCCEEEEEccCHHHHHH
Confidence 555444444 4444333211110 010000 000000012234699999999999999875 46899999987666
Q ss_pred ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCCceeeeee
Q 007917 422 QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNGGYTIEVE 497 (585)
Q Consensus 422 ~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~~~~~~~~ 497 (585)
..++ ..+|+.+.++|+|||++|+|||+++|.+ +++|+++|||||+ ||+|++||++|+++||+||++|++.+.
T Consensus 389 ~~~~---~~~~~~~~~~g~mG~glpaaiGa~lA~~-~r~v~i~GDG~f~m~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~ 464 (535)
T TIGR03394 389 MDMD---DAGLMAPGYYAGMGFGVPAGIGAQCTSG-KRILTLVGDGAFQMTGWELGNCRRLGIDPIVILFNNASWEMLRV 464 (535)
T ss_pred HhcC---CCcEECcCccchhhhHHHHHHHHHhCCC-CCeEEEEeChHHHhHHHHHHHHHHcCCCcEEEEEECCccceeeh
Confidence 5442 3458888999999999999999999975 5678899999999 999999999999999999999999544
Q ss_pred ecC-CCCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChHHHHHHH
Q 007917 498 IHD-GPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWG 571 (585)
Q Consensus 498 ~~~-~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~~~~~~~~~ 571 (585)
.+. ..|+++.++||+++|++||+ ++++|++.+||+++|+++++ ..++|+||||.+++++.++.++++.
T Consensus 465 ~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~eL~~al~~a~~-~~~~p~lIev~i~~~~~~~~~~~~~ 533 (535)
T TIGR03394 465 FQPESAFNDLDDWRFADMAAGMGG-----DGVRVRTRAELAAALDKAFA-TRGRFQLIEAMLPRGVLSDTLARFV 533 (535)
T ss_pred hccCCCcccCCCCCHHHHHHHcCC-----CceEeCCHHHHHHHHHHHHh-cCCCeEEEEEECCcccCCHHHHHHh
Confidence 332 34667778999999999999 99999999999999999985 2355999999999999999886654
No 12
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=1.7e-93 Score=784.14 Aligned_cols=519 Identities=20% Similarity=0.254 Sum_probs=430.8
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHH
Q 007917 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (585)
Q Consensus 25 ~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (585)
+.++++++|++.|+++||++|||+||+++.+|+++|.+.++|++|.||||++|+|||+||+|+||+ +||++|+|||++|
T Consensus 8 ~~~~~~~~i~~~L~~~Gv~~vFgipG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n 87 (566)
T PRK07282 8 SPKSGSDLVLETLRDLGVDTIFGYPGGAVLPLYDAIYNFEGIRHILARHEQGALHEAEGYAKSTGKLGVAVVTSGPGATN 87 (566)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHhhcCCceEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHH
Confidence 567999999999999999999999999999999999765689999999999999999999999998 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-
Q 007917 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (585)
Q Consensus 104 ~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (585)
+++||++|+.+++|||+|+|+.++...+++ .+ |..||..+++++|||+.++.+++++++.|++|++.|.++
T Consensus 88 ~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~-----~~---q~~d~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~~~ 159 (566)
T PRK07282 88 AITGIADAMSDSVPLLVFTGQVARAGIGKD-----AF---QEADIVGITMPITKYNYQIRETADIPRIITEAVHIATTGR 159 (566)
T ss_pred HHHHHHHHhhcCCCEEEEecccccccCCCC-----Cc---cccChhchhcCCCceeEEcCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999988766654 22 235788999999999999999999999999999999997
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHh
Q 007917 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (585)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l 262 (585)
+|||||+||.|++..+.+.......+.... . ....+++..+++++++|.+|+||+|++|.|+.++++.+++++|||++
T Consensus 160 ~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~l 237 (566)
T PRK07282 160 PGPVVIDLPKDVSALETDFIYDPEVNLPSY-Q-PTLEPNDMQIKKILKQLSKAKKPVILAGGGINYAEAATELNAFAERY 237 (566)
T ss_pred CCeEEEeCChhhhhhhhcccccccccccCC-C-CCCCCCHHHHHHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHh
Confidence 699999999999764211100000111000 0 10112356799999999999999999999999889999999999999
Q ss_pred CCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecC
Q 007917 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (585)
Q Consensus 263 ~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~ 342 (585)
++||++|++|||+||++||+++|.+ |..++...++++++||+||+||+++++..+..+..+.++.++||||.|+.+++
T Consensus 238 ~~pv~tt~~gkg~ip~~hpl~~G~~-G~~~~~~~~~~~~~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~i~- 315 (566)
T PRK07282 238 QIPVVTTLLGQGTIATSHPLFLGMG-GMHGSYAANIAMTEADFMINIGSRFDDRLTGNPKTFAKNAKVAHIDIDPAEIG- 315 (566)
T ss_pred CCCEEeccccCCCCCCCChhhcCCC-CCCCCHHHHHHHHhCCEEEEECCCCCccccCChhhcCCCCeEEEEECCHHHhC-
Confidence 9999999999999999999999986 77888889999999999999999999887766655556678999999999887
Q ss_pred CCcccc----ccHHHHHHHHHHHhccCcc--ch-hhhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEecCC
Q 007917 343 GPSLGW----VFMADFLSALAKKLRKNTT--AL-ENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETG 415 (585)
Q Consensus 343 ~~~~~~----~~~~~~l~~L~~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d~G 415 (585)
+.+..+ .|++.+|++|++.++.... .| ..+.+..... ........++++.+++++|++.++++++++.|+|
T Consensus 316 ~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~l~~~~~~~~ivv~d~G 393 (566)
T PRK07282 316 KIIKTDIPVVGDAKKALQMLLAEPTVHNNTEKWIEKVTKDKNRV--RSYDKKERVVQPQAVIERIGELTNGDAIVVTDVG 393 (566)
T ss_pred CCCCCCeEEecCHHHHHHHHHHhhcccCChHHHHHHHHHHHHhc--hhccCcCCCcCHHHHHHHHHhhcCCCeEEEECCc
Confidence 333222 4899999999987754311 12 1111110000 0011123469999999999999999999999999
Q ss_pred cccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCC
Q 007917 416 DSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNG 490 (585)
Q Consensus 416 ~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~ 490 (585)
++..|. .++..+++.+|+.+.++|+|||++|+|||+++|.|+|+||+++|||||+ ||+|++||++|+++||+||+
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~i~~vV~NN~ 473 (566)
T PRK07282 394 QHQMWAAQYYPYQNERQLVTSGGLGTMGFGIPAAIGAKIANPDKEVILFVGDGGFQMTNQELAILNIYKVPIKVVMLNNH 473 (566)
T ss_pred HHHHHHHHhcccCCCCcEecCCccccccchhhHhheeheecCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEEEEeCC
Confidence 987664 4566666777999999999999999999999999999999999999999 99999999999999999999
Q ss_pred ceeeeee----ecCCCC--CCC-CCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCC
Q 007917 491 GYTIEVE----IHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDT 563 (585)
Q Consensus 491 ~~~~~~~----~~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~ 563 (585)
+|++.+. .+.+.+ ..+ +++||.++|++||+ ++++|++.+||+++|+. +. .++|+||||.+++++.
T Consensus 474 ~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~el~~al~~-~~--~~~p~lIeV~v~~~~~ 545 (566)
T PRK07282 474 SLGMVRQWQESFYEGRTSESVFDTLPDFQLMAQAYGI-----KHYKFDNPETLAQDLEV-IT--EDVPMLIEVDISRKEH 545 (566)
T ss_pred CchHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCC-----EEEEECCHHHHHHHHHH-hc--CCCCEEEEEEeCCccc
Confidence 9998321 122222 233 46899999999999 99999999999999974 54 6899999999998775
Q ss_pred hH
Q 007917 564 SK 565 (585)
Q Consensus 564 ~~ 565 (585)
+.
T Consensus 546 ~~ 547 (566)
T PRK07282 546 VL 547 (566)
T ss_pred cC
Confidence 43
No 13
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=100.00 E-value=4.7e-93 Score=781.27 Aligned_cols=522 Identities=21% Similarity=0.322 Sum_probs=433.6
Q ss_pred cccCCcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCc
Q 007917 21 RGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTV 99 (585)
Q Consensus 21 ~~~~~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~Gp 99 (585)
|++...++++++|++.|+++||++|||+||+++.+|+++|.+ ++|++|.||||++|+|||+||+|+||+ +||++|+||
T Consensus 2 ~~~~~~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~-~~i~~v~~~hE~~A~~~Adgyar~tg~~~v~~~t~Gp 80 (561)
T PRK06048 2 TGSTEKMTGARAIIKCLEKEGVEVIFGYPGGAIIPVYDELYD-SDLRHILVRHEQAAAHAADGYARATGKVGVCVATSGP 80 (561)
T ss_pred CCccccccHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhh-CCCeEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCC
Confidence 455556899999999999999999999999999999999965 589999999999999999999999999 999999999
Q ss_pred chHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHh
Q 007917 100 GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTA 179 (585)
Q Consensus 100 G~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a 179 (585)
|++|+++||++||.+++|||+|+|+.+....+++ .+ |..||..+|+++|||++++++++++++.|++|++.|
T Consensus 81 G~~n~~~gl~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~---q~~d~~~~~~~itk~s~~v~~~~~i~~~i~~A~~~A 152 (561)
T PRK06048 81 GATNLVTGIATAYMDSVPIVALTGQVPRSMIGND-----AF---QEADITGITMPITKHNYLVQDAKDLPRIIKEAFHIA 152 (561)
T ss_pred cHHHHHHHHHHHhhcCCCEEEEeccCCccccCCC-----Cc---cccchhhhccCcceEEEEeCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998765553 22 235889999999999999999999999999999999
Q ss_pred hhc-CCcEEEEecCCCCCCCCCCCCCCCCCc-cCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHH
Q 007917 180 LKE-SKPVYISISCNLPGIPHPTFARDPVPF-FLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIE 257 (585)
Q Consensus 180 ~~~-~gPV~i~iP~dv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~ 257 (585)
.++ +|||||+||.|++..+.+...+...+. ...+. ..++.+.+++++++|.+||||+|++|.|++++++.+++++
T Consensus 153 ~~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~a~~L~~AkrPvil~G~g~~~~~a~~~l~~ 229 (561)
T PRK06048 153 STGRPGPVLIDLPKDVTTAEIDFDYPDKVELRGYKPT---YKGNPQQIKRAAELIMKAERPIIYAGGGVISSNASEELVE 229 (561)
T ss_pred hcCCCCeEEEecChhhhhcccccccCcccccccCCCC---CCCCHHHHHHHHHHHHhCCCCEEEECCCcccccHHHHHHH
Confidence 996 699999999999763211100110111 00111 1124567999999999999999999999999899999999
Q ss_pred HHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCc
Q 007917 258 LADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHR 337 (585)
Q Consensus 258 lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~ 337 (585)
|||++|+||+||++|||+||++||+++|.+ |..+++.+++++++||+||+||+++++..+..|..+.+..++||||.|+
T Consensus 230 lae~lg~pV~tt~~~kg~~~~~hpl~~G~~-g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~ 308 (561)
T PRK06048 230 LAETIPAPVTTTLMGIGAIPTEHPLSLGML-GMHGTKYANYAIQESDLIIAVGARFDDRVTGKLASFAPNAKIIHIDIDP 308 (561)
T ss_pred HHHHhCCCEEEccccCccCCCCCccccCCC-CCCCCHHHHHHHHhCCEEEEECCCCCccccCChhhcCCCCeEEEEECCH
Confidence 999999999999999999999999999996 7888889999999999999999999988776665555667899999999
Q ss_pred eeecCCCcccc----ccHHHHHHHHHHHhccCcc-ch-hhhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEE
Q 007917 338 VTVGNGPSLGW----VFMADFLSALAKKLRKNTT-AL-ENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVI 411 (585)
Q Consensus 338 ~~~~~~~~~~~----~~~~~~l~~L~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~ 411 (585)
.+++ +++..+ .|++.+|++|++.+..... .| +.+.......... ......++++..++++|++.+| +.+++
T Consensus 309 ~~~~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~~p-~~iiv 385 (561)
T PRK06048 309 AEIS-KNVKVDVPIVGDAKQVLKSLIKYVQYCDRKEWLDKINQWKKEYPLK-YKEREDVIKPQYVIEQIYELCP-DAIIV 385 (561)
T ss_pred HHhC-CCCCCCeEEEeCHHHHHHHHHHhccccCcHHHHHHHHHHHHhChhh-ccCCCCCcCHHHHHHHHHhhCC-CcEEE
Confidence 8886 333332 4899999999988764321 12 1111111000000 0112347999999999999998 79999
Q ss_pred ecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEE
Q 007917 412 AETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFL 486 (585)
Q Consensus 412 ~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV 486 (585)
.|+|++..|. .++..+++.+|+.+.++|+|||++|+|||+++|.|+|+||+++|||||+ ||+|++||++|+++||
T Consensus 386 ~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~i~~vV 465 (561)
T PRK06048 386 TEVGQHQMWAAQYFKYKYPRTFITSGGLGTMGYGFPAAIGAKVGKPDKTVIDIAGDGSFQMNSQELATAVQNDIPVIVAI 465 (561)
T ss_pred EcCcHHHHHHHHhcccCCCCeEEeCCCccccccHHHHHHHHHHhCCCCcEEEEEeCchhhccHHHHHHHHHcCCCeEEEE
Confidence 9999986654 4566666677999999999999999999999999999999999999999 9999999999999999
Q ss_pred EeCCceeeeee----ecCCCC--CCC-CCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcC
Q 007917 487 INNGGYTIEVE----IHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVH 559 (585)
Q Consensus 487 ~NN~~~~~~~~----~~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~ 559 (585)
+||++|++.+. .++..+ .++ +++||.++|++||+ ++++|++.+||+++|+++++ .++|+||||.++
T Consensus 466 ~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~t~~el~~al~~a~~--~~~p~liev~~~ 538 (561)
T PRK06048 466 LNNGYLGMVRQWQELFYDKRYSHTCIKGSVDFVKLAEAYGA-----LGLRVEKPSEVRPAIEEAVA--SDRPVVIDFIVE 538 (561)
T ss_pred EECCccHHHHHHHHHHcCCcccccCCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCEEEEEEec
Confidence 99999998321 122333 233 67999999999999 99999999999999999996 789999999999
Q ss_pred CCCChH
Q 007917 560 KDDTSK 565 (585)
Q Consensus 560 ~~~~~~ 565 (585)
+++.+.
T Consensus 539 ~~~~~~ 544 (561)
T PRK06048 539 CEENVS 544 (561)
T ss_pred CccccC
Confidence 887653
No 14
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=4.2e-93 Score=780.04 Aligned_cols=521 Identities=19% Similarity=0.241 Sum_probs=433.3
Q ss_pred CCcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchH
Q 007917 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGL 102 (585)
Q Consensus 24 ~~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~ 102 (585)
...++++++|++.|+++||+||||+||+++++|+++|.+ .+|++|.||||++|+|||+||||+||+ |||++|+|||++
T Consensus 12 ~~~~~~a~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~-~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~ 90 (570)
T PRK06725 12 CEEVTGAGHVIQCLKKLGVTTVFGYPGGAILPVYDALYE-SGLKHILTRHEQAAIHAAEGYARASGKVGVVFATSGPGAT 90 (570)
T ss_pred cccccHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHh-cCCcEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHH
Confidence 346899999999999999999999999999999999975 479999999999999999999999999 999999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc
Q 007917 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (585)
Q Consensus 103 n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~ 182 (585)
|+++||++||.+++|||+|+|+.++...+++ .+ |..||..+++++|||+.++.+++++++.|++||+.|.++
T Consensus 91 N~~~gla~A~~~~~Pvl~I~G~~~~~~~~~~-----~~---q~~d~~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~s~ 162 (570)
T PRK06725 91 NLVTGLADAYMDSIPLVVITGQVATPLIGKD-----GF---QEADVVGITVPVTKHNYQVRDVNQLSRIVQEAFYIAESG 162 (570)
T ss_pred HHHHHHHHHhhcCcCEEEEecCCCcccccCC-----CC---cccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998765553 22 345889999999999999999999999999999999997
Q ss_pred -CCcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHH
Q 007917 183 -SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (585)
Q Consensus 183 -~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~ 261 (585)
+|||||+||.|++..+.+.......+ ..+......+++..+++++++|.+||||+|++|.|+.++++.++|.+|||+
T Consensus 163 ~~GPV~l~iP~Dv~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~~A~rPvIl~G~g~~~~~a~~~l~~lae~ 240 (570)
T PRK06725 163 RPGPVLIDIPKDVQNEKVTSFYNEVVE--IPGYKPEPRPDSMKLREVAKAISKAKRPLLYIGGGVIHSGGSEELIEFARE 240 (570)
T ss_pred CCCcEEEccccchhhcccccccCcccc--cccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCccccchHHHHHHHHHH
Confidence 69999999999976322110111000 000000012345679999999999999999999999998999999999999
Q ss_pred hCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeec
Q 007917 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (585)
Q Consensus 262 l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~ 341 (585)
+++||+||++|||.||++||+++|++ |..++..+++++++||+||+||+++++..+..+..+.++.++||||.|+.+++
T Consensus 241 ~~~PV~tt~~~kg~~p~~hp~~~G~~-G~~~~~~~~~~l~~aDlil~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~ 319 (570)
T PRK06725 241 NRIPVVSTLMGLGAYPPGDPLFLGML-GMHGTYAANMAVTECDLLLALGVRFDDRVTGKLELFSPHSKKVHIDIDPSEFH 319 (570)
T ss_pred hCCCEEECCccCcCCCCCChhhcCCC-CCCCCHHHHHHHHhCCEEEEeCCCCCccccCcccccCCCCeEEEEeCCHHHhC
Confidence 99999999999999999999999997 88888889999999999999999999888766555555668999999999887
Q ss_pred CCCcccc----ccHHHHHHHHHHHhccCcc-ch-hhhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEecCC
Q 007917 342 NGPSLGW----VFMADFLSALAKKLRKNTT-AL-ENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETG 415 (585)
Q Consensus 342 ~~~~~~~----~~~~~~l~~L~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d~G 415 (585)
+.+..+ .|+..+|++|.+.+..... .| ..+........ ........++++.++++.|++.++++.+++.|+|
T Consensus 320 -~~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~l~~~l~~d~iiv~d~g 397 (570)
T PRK06725 320 -KNVAVEYPVVGDVKKALHMLLHMSIHTQTDEWLQKVKTWKEEYP-LSYKQKESELKPQHVINLVSELTNGEAIVTTEVG 397 (570)
T ss_pred -CCCCCCeEEecCHHHHHHHHHHhccccCcHHHHHHHHHHHHhCh-hhhcccCCCcCHHHHHHHHHhhCCCCcEEEeCCc
Confidence 433333 3899999999887754211 11 11111100000 0001123469999999999999999999999999
Q ss_pred cccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCC
Q 007917 416 DSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNG 490 (585)
Q Consensus 416 ~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~ 490 (585)
++..|. .++..+.+.+|+.+.++|+|||++|+|||+++|+|+++||+++|||||+ ||+|++++++|+++||+||+
T Consensus 398 ~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~el~Ta~~~~lpi~~vV~NN~ 477 (570)
T PRK06725 398 QHQMWAAHFYKAKNPRTFLTSGGLGTMGFGFPAAIGAQLAKEEELVICIAGDASFQMNIQELQTIAENNIPVKVFIINNK 477 (570)
T ss_pred HHHHHHHHhccccCCCeEEccCCcccccchhhHHHhhHhhcCCCeEEEEEecchhhccHHHHHHHHHhCCCeEEEEEECC
Confidence 987654 4466666667999999999999999999999999999999999999998 99999999999999999999
Q ss_pred ceeeeee----ecCCCC--CCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCCh
Q 007917 491 GYTIEVE----IHDGPY--NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTS 564 (585)
Q Consensus 491 ~~~~~~~----~~~~~~--~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~~ 564 (585)
+|++.+. .++..+ .++.++||.++|++||+ ++++|++.+||+++|+++++ .++|+||||.+++++.+
T Consensus 478 ~~~~~~~~q~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~l~~al~~a~~--~~~p~liev~id~~~~~ 550 (570)
T PRK06725 478 FLGMVRQWQEMFYENRLSESKIGSPDFVKVAEAYGV-----KGLRATNSTEAKQVMLEAFA--HEGPVVVDFCVEEGENV 550 (570)
T ss_pred ccHHHHHHHHHhcCCccccCcCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEeCCcccc
Confidence 9998321 122333 34567999999999999 99999999999999999997 78999999999987755
Q ss_pred H
Q 007917 565 K 565 (585)
Q Consensus 565 ~ 565 (585)
.
T Consensus 551 ~ 551 (570)
T PRK06725 551 F 551 (570)
T ss_pred C
Confidence 4
No 15
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=100.00 E-value=7.8e-93 Score=786.30 Aligned_cols=520 Identities=23% Similarity=0.288 Sum_probs=430.4
Q ss_pred cCCcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC---CCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCC
Q 007917 23 GASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGV-GACVVTFT 98 (585)
Q Consensus 23 ~~~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~---~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~G 98 (585)
....++++++|++.|+++||+||||+||+.+.+|+++|.+. ++|++|.+|||++|+|||+||+|+||+ |||++|+|
T Consensus 15 ~~~~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~~~i~~i~~rhE~~Aa~aA~gyar~tgk~gv~~~t~G 94 (616)
T PRK07418 15 TPQRATGAYALMDSLKRHGVKHIFGYPGGAILPIYDELYKAEAEGWLKHILVRHEQGAAHAADGYARATGKVGVCFGTSG 94 (616)
T ss_pred CCccccHHHHHHHHHHHcCCCEEEeCcCcchHHHHHHHHhcccCCCceEEEeccHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 34568999999999999999999999999999999999642 369999999999999999999999999 99999999
Q ss_pred cchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHH
Q 007917 99 VGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAIST 178 (585)
Q Consensus 99 pG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~ 178 (585)
||++|+++||++|+.+++|||+|+|+.++...+++ .+| ..||..+|+++|||+.++.+++++++.|++||+.
T Consensus 95 PG~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~~~~-----~~Q---e~d~~~~~~~vtk~~~~v~~~~~i~~~l~~A~~~ 166 (616)
T PRK07418 95 PGATNLVTGIATAQMDSVPMVVITGQVPRPAIGTD-----AFQ---ETDIFGITLPIVKHSYVVRDPSDMARIVAEAFHI 166 (616)
T ss_pred ccHHHHHHHHHHHHhcCCCEEEEecCCCccccCCC-----Ccc---cccHHHHhhhcceeEEEeCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998866654 232 3588999999999999999999999999999999
Q ss_pred hhhc-CCcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHH
Q 007917 179 ALKE-SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIE 257 (585)
Q Consensus 179 a~~~-~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~ 257 (585)
|.++ +|||||+||.|++..+.+.....+.............++++.+++++++|++||||+|++|.|++++++.++|++
T Consensus 167 A~~~~~GPv~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~L~~AkrPvI~~G~g~~~~~a~~~l~~ 246 (616)
T PRK07418 167 ASSGRPGPVLIDIPKDVGQEEFDYVPVEPGSVKPPGYRPTVKGNPRQINAALKLIEEAERPLLYVGGGAISAGAHAELKE 246 (616)
T ss_pred HhcCCCCcEEEecchhhhhchhcccccCccccccCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcCcccHHHHHHH
Confidence 9997 599999999999764222110000000000000001234568999999999999999999999998899999999
Q ss_pred HHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCc
Q 007917 258 LADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHR 337 (585)
Q Consensus 258 lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~ 337 (585)
|||++++||++|++|||+||++||+++|.+ |..+++.+++++++||+||+||+++++..+..|..+.+..++||||.|+
T Consensus 247 lae~l~~pV~tt~~gkg~~p~~hpl~~G~~-G~~g~~~~~~~l~~aDlvL~vG~~~~~~~~~~~~~~~~~~~~i~id~d~ 325 (616)
T PRK07418 247 LAERFQIPVTTTLMGKGAFDEHHPLSVGML-GMHGTAYANFAVTECDLLIAVGARFDDRVTGKLDEFASRAKVIHIDIDP 325 (616)
T ss_pred HHHHHCCCEEEccCCCcCCCCCCcccccCC-CCCCCHHHHHHHHhCCEEEEEcCCCCccccCChhhcCCCCeEEEEeCCH
Confidence 999999999999999999999999999986 8888889999999999999999999988776665555667899999999
Q ss_pred eeecCCCcccc----ccHHHHHHHHHHHhccCc-----cchh----hhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhC
Q 007917 338 VTVGNGPSLGW----VFMADFLSALAKKLRKNT-----TALE----NYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDML 404 (585)
Q Consensus 338 ~~~~~~~~~~~----~~~~~~l~~L~~~l~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l 404 (585)
.+++ +++..+ .|++.+|++|++.+.... ..|. +|++.... .......++++.+++++|++.+
T Consensus 326 ~~ig-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~v~~~l~~~~ 400 (616)
T PRK07418 326 AEVG-KNRRPDVPIVGDVRKVLVKLLERSLEPTTPPRTQAWLERINRWKQDYPL----VVPPYEGEIYPQEVLLAVRDLA 400 (616)
T ss_pred HHhC-CccCCCeEEecCHHHHHHHHHHhhhccccccchHHHHHHHHHHHHhCcc----cccCCCCCcCHHHHHHHHHhhC
Confidence 9887 433332 489999999998875422 1121 12111100 0111235799999999999999
Q ss_pred CCCCEEEecCCccccccccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCC
Q 007917 405 SGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQ 480 (585)
Q Consensus 405 ~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~l 480 (585)
+ +++++.|+|++..|...+...++.+++++.++|+|||++|+|||+++|.|+|+||+|+|||||+ ||+|++||++
T Consensus 401 ~-d~i~~~D~G~~~~~~~~~~~~~p~~~~~s~~~g~mG~glpaAiGA~lA~p~r~Vv~i~GDG~f~m~~~eL~Ta~r~~l 479 (616)
T PRK07418 401 P-DAYYTTDVGQHQMWAAQFLRNGPRRWISSAGLGTMGFGMPAAMGVKVALPDEEVICIAGDASFLMNIQELGTLAQYGI 479 (616)
T ss_pred C-CcEEEECChHHHHHHHHhhhcCCCeEEcCCCccccccHHHHHHHHHHhCCCCcEEEEEcchHhhhhHHHHHHHHHhCC
Confidence 8 5999999999877754332244556898999999999999999999999999999999999999 9999999999
Q ss_pred CeEEEEEeCCceeeeee----ecCCCC--CCC--CCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeE
Q 007917 481 RSIIFLINNGGYTIEVE----IHDGPY--NVI--KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLC 552 (585)
Q Consensus 481 pv~ivV~NN~~~~~~~~----~~~~~~--~~~--~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~ 552 (585)
|+++||+||++|++.+. .+...+ .++ +.+||.++|++||+ ++++|++++||+++|+++++ .++|+
T Consensus 480 pvi~vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~d~~~~A~a~G~-----~g~~V~~~~el~~al~~a~~--~~~p~ 552 (616)
T PRK07418 480 NVKTVIINNGWQGMVRQWQESFYGERYSASNMEPGMPDFVKLAEAFGV-----KGMVISERDQLKDAIAEALA--HDGPV 552 (616)
T ss_pred CeEEEEEECCcchHHHHHHHHhcCCCceeecCCCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCE
Confidence 99999999999998221 112222 233 46899999999999 99999999999999999986 78999
Q ss_pred EEEEEcCCCCCh
Q 007917 553 FIEVFVHKDDTS 564 (585)
Q Consensus 553 vIeV~v~~~~~~ 564 (585)
||||++++++.+
T Consensus 553 lIeV~i~~~~~~ 564 (616)
T PRK07418 553 LIDVHVRRDENC 564 (616)
T ss_pred EEEEEecCcccc
Confidence 999999987753
No 16
>PRK11269 glyoxylate carboligase; Provisional
Probab=100.00 E-value=5.6e-93 Score=784.54 Aligned_cols=519 Identities=18% Similarity=0.220 Sum_probs=427.4
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhc-Cc-cEEEEeCCcchHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSR-GV-GACVVTFTVGGLS 103 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~t-g~-~v~~~t~GpG~~n 103 (585)
.++++++|++.|+++||+||||+||+++.+|+++|.++++|++|.||||++|+|||+||||+| |+ +||++|+|||++|
T Consensus 3 ~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N 82 (591)
T PRK11269 3 KMRAVDAAVLVLEKEGVTTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 82 (591)
T ss_pred cccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHH
Confidence 479999999999999999999999999999999997656899999999999999999999999 98 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-
Q 007917 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (585)
Q Consensus 104 ~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (585)
+++||++||.+++|||+|+|++++...+++ . .|..||..+|+++|||+.++.++++++++|++||+.|.++
T Consensus 83 ~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-----~---~q~~d~~~l~~~itk~s~~v~~~~~~~~~i~~A~~~A~~~~ 154 (591)
T PRK11269 83 MITGLYSASADSIPILCITGQAPRARLHKE-----D---FQAVDIESIAKPVTKWAVTVREPALVPRVFQQAFHLMRSGR 154 (591)
T ss_pred HHHHHHHHhhcCCCEEEEecCCCccccCCC-----c---ccccChhhHhhcceeEEEEcCCHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999998866554 2 2346899999999999999999999999999999999997
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHh
Q 007917 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (585)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l 262 (585)
+|||||+||.|++.. +.+...+........ ...+.++.+++++++|.+||||+||+|.|+.++++.+++.+|||++
T Consensus 155 ~GPV~l~iP~Dv~~~--~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~ 230 (591)
T PRK11269 155 PGPVLIDLPFDVQVA--EIEFDPDTYEPLPVY--KPAATRAQIEKALEMLNAAERPLIVAGGGVINADASDLLVEFAELT 230 (591)
T ss_pred CCeEEEEeChhhhhc--ccccccccccccccC--CCCCCHHHHHHHHHHHHhCCCcEEEECCCCcccCHHHHHHHHHHHh
Confidence 699999999999763 221111110001111 1112456789999999999999999999999889999999999999
Q ss_pred CCCeEEccCCccCCCCCCCCceeeecCCC-CCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeec
Q 007917 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAV-SSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (585)
Q Consensus 263 ~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~-~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~ 341 (585)
|+||++|++|||+||++||+++|++ |.. +.+.+++++++||+||+||++++++.+..|..+.++.++||||.|+..++
T Consensus 231 g~PV~tt~~gkg~~p~~hpl~~G~~-g~~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~i~Vd~d~~~~~ 309 (591)
T PRK11269 231 GVPVIPTLMGWGAIPDDHPLMAGMV-GLQTSHRYGNATLLASDFVLGIGNRWANRHTGSVEVYTKGRKFVHVDIEPTQIG 309 (591)
T ss_pred CCCeEecccccCcCCCCChhhccCC-cCCCCcHHHHHHHHhCCEEEEeCCCCCccccCchhhcCCCCeEEEeeCCHHHhC
Confidence 9999999999999999999999997 543 66778889999999999999999888766665556678999999999887
Q ss_pred CCCcccc----ccHHHHHHHHHHHhccCc-----cchhhhh----hccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCC
Q 007917 342 NGPSLGW----VFMADFLSALAKKLRKNT-----TALENYR----RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDT 408 (585)
Q Consensus 342 ~~~~~~~----~~~~~~l~~L~~~l~~~~-----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 408 (585)
+.+..+ .|++.+|+.|.+.++... .....|. +.... ........+.++++..++++|++.+++++
T Consensus 310 -~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~l~~~l~~d~ 387 (591)
T PRK11269 310 -RVFGPDLGIVSDAKAALELLVEVAREWKAAGRLPDRSAWVADCQERKRT-LLRKTHFDNVPIKPQRVYEEMNKAFGRDT 387 (591)
T ss_pred -CCCCCCeEEEeCHHHHHHHHHHHhhhhcccccccchHHHHHHHHHHHHh-chhhccCCCCCcCHHHHHHHHHHhcCCCc
Confidence 333222 488999999988774310 1111221 11100 00101122346999999999999999999
Q ss_pred EEEecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeE
Q 007917 409 AVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSI 483 (585)
Q Consensus 409 ii~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ 483 (585)
+++.|+|++..|. .++..+++..|+.++++|+|||++|+|||+++|.|+|+||+++|||||+ ||+|++||++|++
T Consensus 388 ivv~d~g~~~~~~~~~~~~~~p~~~~~~~~~G~mG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~~eL~Ta~~~~lpv~ 467 (591)
T PRK11269 388 CYVSTIGLSQIAAAQFLHVYKPRHWINCGQAGPLGWTIPAALGVRAADPDRNVVALSGDYDFQFLIEELAVGAQFNLPYI 467 (591)
T ss_pred EEEECCcHHHHHHHHhcccCCCCcEEeCCccccccchhhhHHhhhhhCCCCcEEEEEccchhhcCHHHHHHHHHhCCCeE
Confidence 9999999987654 4555556666888889999999999999999999999999999999998 9999999999999
Q ss_pred EEEEeCCceeeeeee----cCC-----CCCC-------CCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--
Q 007917 484 IFLINNGGYTIEVEI----HDG-----PYNV-------IKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG-- 545 (585)
Q Consensus 484 ivV~NN~~~~~~~~~----~~~-----~~~~-------~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~-- 545 (585)
+||+||++|++.+.. ... .|.. .+++||.++|++||+ ++.+|++++||+++|+++++
T Consensus 468 ~vV~NN~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~-----~~~~v~~~~eL~~al~~a~~~~ 542 (591)
T PRK11269 468 HVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSPELNGYGVDHVKVAEGLGC-----KAIRVFKPEDIAPALEQAKALM 542 (591)
T ss_pred EEEEeCCchhHHHHHHHHhccCccceeeccccccccccCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHhhc
Confidence 999999999983211 111 1111 146999999999999 99999999999999999983
Q ss_pred cCCCCeEEEEEEcCCCCCh
Q 007917 546 EQKDSLCFIEVFVHKDDTS 564 (585)
Q Consensus 546 ~~~~gp~vIeV~v~~~~~~ 564 (585)
.+.+||+||||.+++++.+
T Consensus 543 ~~~~gp~lieV~v~~~~~~ 561 (591)
T PRK11269 543 AEFRVPVVVEVILERVTNI 561 (591)
T ss_pred ccCCCcEEEEEEeccccCC
Confidence 1268999999999988753
No 17
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=100.00 E-value=9.9e-93 Score=784.88 Aligned_cols=540 Identities=22% Similarity=0.299 Sum_probs=441.9
Q ss_pred ccCCCCCCCCcc--ccccccCCcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhh
Q 007917 6 AMGSTGQPGSAP--APVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADG 83 (585)
Q Consensus 6 ~~~~~~~~~~~~--~~~~~~~~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~g 83 (585)
+-.|...|..+| -||-.....++++++|++.|+++||++|||+||+++.+|+++|.++++|++|.||||++|+|||+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~i~~v~~rhE~~A~~~Adg 87 (612)
T PRK07789 8 AAASAAPPPAAPAARPRIVAPERMTGAQAVVRSLEELGVDVVFGIPGGAILPVYDPLFDSTKVRHVLVRHEQGAGHAAEG 87 (612)
T ss_pred hhhccCCCCCCccccccccccccccHHHHHHHHHHHCCCCEEEEcCCcchHHHHHHHhccCCceEEEeccHHHHHHHHHH
Confidence 445666666666 444455666899999999999999999999999999999999976568999999999999999999
Q ss_pred hhhhcCc-cEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEe
Q 007917 84 YARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVV 162 (585)
Q Consensus 84 yar~tg~-~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v 162 (585)
|+|+||+ +||++|+|||++|+++||++||.+++|||+|+|+.+....+.+ .+ |..||..+|+++|||+.++
T Consensus 88 yar~tg~~gv~~~t~GPG~~N~l~gl~~A~~~~~PllvI~G~~~~~~~~~~-----~~---q~~d~~~l~~~~tk~s~~v 159 (612)
T PRK07789 88 YAQATGRVGVCMATSGPGATNLVTPIADANMDSVPVVAITGQVGRGLIGTD-----AF---QEADIVGITMPITKHNFLV 159 (612)
T ss_pred HHHHhCCCEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccCCC-----cC---cccchhhhhhcceeEEEEc
Confidence 9999999 9999999999999999999999999999999999998766553 22 3458999999999999999
Q ss_pred cCcchhHHHHHHHHHHhhhc-CCcEEEEecCCCCCCCCCCCCCCCCCcc-CCCCCCChhhHHHHHHHHHHHHHhcCCCEE
Q 007917 163 NNLGDAHELIDTAISTALKE-SKPVYISISCNLPGIPHPTFARDPVPFF-LAPKVSNQLGLEAAVEATADFLNKAVKPVL 240 (585)
Q Consensus 163 ~~~~~~~~~l~~A~~~a~~~-~gPV~i~iP~dv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~a~rpvI 240 (585)
.++++++++|++|++.|+++ +|||||+||.|++..+.+.......+.. ..+.. .+.+..+++++++|.+||||+|
T Consensus 160 ~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~---~p~~~~i~~~~~~L~~AkrPlI 236 (612)
T PRK07789 160 TDADDIPRVIAEAFHIASTGRPGPVLVDIPKDALQAQTTFSWPPRMDLPGYRPVT---KPHGKQIREAAKLIAAARRPVL 236 (612)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCceEEEEEccchhhcccccccCccccccCCCCCC---CCCHHHHHHHHHHHHhCCCCEE
Confidence 99999999999999999996 6999999999997642211001100110 01110 1235679999999999999999
Q ss_pred EeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCccccc
Q 007917 241 VGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVG 320 (585)
Q Consensus 241 i~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~ 320 (585)
|+|.|+.++++.+++++|||++++||++|++|||+||++||+++|.+ |..++..+++++++||+||+||+++++..+..
T Consensus 237 l~G~g~~~~~a~~~l~~lae~l~~PV~tt~~~kg~~p~~hpl~~G~~-G~~~~~~~~~~l~~aDlvL~lG~~l~~~~t~~ 315 (612)
T PRK07789 237 YVGGGVIRAEASAELRELAELTGIPVVTTLMARGAFPDSHPQHLGMP-GMHGTVAAVAALQRSDLLIALGARFDDRVTGK 315 (612)
T ss_pred EECCCccccCHHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCC-cccCcHHHHHHHHhCCEEEEECCCCCccccCC
Confidence 99999998899999999999999999999999999999999999986 88888888999999999999999998877765
Q ss_pred ccccCCCcceEEEcCCceeecCCCcccc----ccHHHHHHHHHHHhccCc-----cchhhhhh----ccCCCCCCCCCCC
Q 007917 321 YSLLIKKEKAIIVQPHRVTVGNGPSLGW----VFMADFLSALAKKLRKNT-----TALENYRR----IYVPPGIPVKRAQ 387 (585)
Q Consensus 321 ~~~~~~~~~~i~id~~~~~~~~~~~~~~----~~~~~~l~~L~~~l~~~~-----~~~~~~~~----~~~~~~~~~~~~~ 387 (585)
+..+.++.++||||.|+.+++ +++..+ .|++.+|++|++.++... ..+..|.+ .+...........
T Consensus 316 ~~~~~~~~~~i~Id~d~~~i~-~~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 394 (612)
T PRK07789 316 LDSFAPDAKVIHADIDPAEIG-KNRHADVPIVGDVKEVIAELIAALRAEHAAGGKPDLTAWWAYLDGWRETYPLGYDEPS 394 (612)
T ss_pred hhhcCCCCcEEEEECCHHHhC-CCCCCCeEEecCHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHHhCcccccccc
Confidence 555556678999999999887 333332 489999999998775321 11122211 1100000001112
Q ss_pred CCCCCHHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcC
Q 007917 388 NEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGD 466 (585)
Q Consensus 388 ~~~~~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GD 466 (585)
+.++++..+++.|++.++++++++.|+|++..|. .++..+++.+|+.+.++|+|||++|+|||+++++|+++||+++||
T Consensus 395 ~~~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~G~mG~glpaaiGa~la~p~~~Vv~i~GD 474 (612)
T PRK07789 395 DGSLAPQYVIERLGEIAGPDAIYVAGVGQHQMWAAQFIDYEKPRTWLNSGGLGTMGYAVPAAMGAKVGRPDKEVWAIDGD 474 (612)
T ss_pred CCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchhhhHHhhhccCCCCcEEEEEcc
Confidence 3469999999999999999999999999987664 445666666799999999999999999999999999999999999
Q ss_pred chhH----hHHHHHHhCCCeEEEEEeCCceeeeee----ecCCCC--CCC-----CCCCHHHHHHHhcCCCCCccEEEec
Q 007917 467 GSFQ----EISTMIRCGQRSIIFLINNGGYTIEVE----IHDGPY--NVI-----KNWDYTGLVNAIHNGEGKCWTAKVR 531 (585)
Q Consensus 467 Gsf~----eL~ta~~~~lpv~ivV~NN~~~~~~~~----~~~~~~--~~~-----~~~d~~~la~a~G~~~~~~~~~~v~ 531 (585)
|||+ ||+|++|+++|+++||+||++|++.+. .+.+.+ .++ +.+||.++|++||+ ++++|+
T Consensus 475 G~f~m~~~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~V~ 549 (612)
T PRK07789 475 GCFQMTNQELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAYGC-----VGLRCE 549 (612)
T ss_pred hhhhccHHHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHCCC-----eEEEEC
Confidence 9999 999999999999999999999998321 122222 122 24899999999999 999999
Q ss_pred CHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCCh
Q 007917 532 SEDELTEAMKTATGEQKDSLCFIEVFVHKDDTS 564 (585)
Q Consensus 532 ~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~~ 564 (585)
+.+||+++|+++++ ..++|+||||.+++++..
T Consensus 550 ~~~eL~~al~~a~~-~~~~p~lIev~i~~~~~~ 581 (612)
T PRK07789 550 REEDVDAVIEKARA-INDRPVVIDFVVGKDAMV 581 (612)
T ss_pred CHHHHHHHHHHHHh-cCCCcEEEEEEECCcccc
Confidence 99999999999985 227999999999987643
No 18
>PRK08322 acetolactate synthase; Reviewed
Probab=100.00 E-value=1.8e-92 Score=776.79 Aligned_cols=523 Identities=20% Similarity=0.261 Sum_probs=434.5
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHH
Q 007917 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (585)
|+++++|++.|+++||++|||+||+++.||+++|.+ ++|++|.+|||++|+|||+||||+||+ +||++|+|||++|++
T Consensus 1 m~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~-~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~ 79 (547)
T PRK08322 1 MKAADLFVKCLENEGVEYIFGIPGEENLDLLEALRD-SSIKLILTRHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLV 79 (547)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHh-cCCcEEEeccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHH
Confidence 678999999999999999999999999999999964 689999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-CC
Q 007917 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (585)
Q Consensus 106 ~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~g 184 (585)
+||++||.+++|||+|+|++++...+++. .|..||.++|+++|||+.++.+++++++.+++|++.|.++ +|
T Consensus 80 ~~i~~A~~~~~Pll~i~g~~~~~~~~~~~--------~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~G 151 (547)
T PRK08322 80 TGVAYAQLGGMPMVAITGQKPIKRSKQGS--------FQIVDVVAMMAPLTKWTRQIVSPDNIPEVVREAFRLAEEERPG 151 (547)
T ss_pred HHHHHHhhcCCCEEEEeccccccccCCCc--------cccccHHHHhhhheeEEEEeCCHHHHHHHHHHHHHHHccCCCC
Confidence 99999999999999999999987655531 2356899999999999999999999999999999999997 69
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCC
Q 007917 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (585)
Q Consensus 185 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~ 264 (585)
||||+||.|++.. +.+.. +........ ..+++..+++++++|.+||||+|++|+|+.++++.+++.+|||++++
T Consensus 152 PV~l~iP~dv~~~--~~~~~-~~~~~~~~~---~~~~~~~i~~~~~~l~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~ 225 (547)
T PRK08322 152 AVHLELPEDIAAE--ETDGK-PLPRSYSRR---PYASPKAIERAAEAIQAAKNPLILIGAGANRKTASKALTEFVDKTGI 225 (547)
T ss_pred cEEEEcChhhhhC--ccccc-cccccCCCC---CCCCHHHHHHHHHHHHhCCCcEEEECCCcchhcHHHHHHHHHHHhCC
Confidence 9999999999763 22111 111111111 11235678999999999999999999999988899999999999999
Q ss_pred CeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecCCC
Q 007917 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (585)
Q Consensus 265 Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~~~ 344 (585)
||++|++|||.||++||+++|.+ |..+++.+++++++||+||+||+++.+..+..|. ..++.++||||.|+..++ +.
T Consensus 226 pv~tt~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~l~~aDlil~lG~~l~~~~~~~~~-~~~~~~~i~id~d~~~~~-~~ 302 (547)
T PRK08322 226 PFFTTQMGKGVIPETHPLSLGTA-GLSQGDYVHCAIEHADLIINVGHDVIEKPPFFMN-PNGDKKVIHINFLPAEVD-PV 302 (547)
T ss_pred CEEEccccCCcCCCCCchhccCC-CCCCCHHHHHHHHhCCEEEEECCCCccccccccC-CCCCCeEEEEeCCHHHcC-CC
Confidence 99999999999999999999985 7778888899999999999999999887765554 234568999999998886 33
Q ss_pred cccc----ccHHHHHHHHHHHhccCcc----chhhhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEecCCc
Q 007917 345 SLGW----VFMADFLSALAKKLRKNTT----ALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGD 416 (585)
Q Consensus 345 ~~~~----~~~~~~l~~L~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d~G~ 416 (585)
+..+ .|++.+|++|.+.++.... ++.++++...+...........++++.++++.|++.++++++++.|.|+
T Consensus 303 ~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ii~~d~G~ 382 (547)
T PRK08322 303 YFPQVEVVGDIANSLWQLKERLADQPHWDFPRFLKIREAIEAHLEEGADDDRFPMKPQRIVADLRKVMPDDDIVILDNGA 382 (547)
T ss_pred cCCCeEEecCHHHHHHHHHHhccccccccHHHHHHHHHHHHHhhhhcccCCCCCcCHHHHHHHHHHHCCCCeEEEECCcH
Confidence 3222 4899999999887754221 1122221110100000111233689999999999999999999999999
Q ss_pred cccccc-cccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCCc
Q 007917 417 SWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNGG 491 (585)
Q Consensus 417 ~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~~ 491 (585)
+..|.. ++...++.+++.+.++|+|||++|+|||+++|.|+++||+++|||||+ ||+|+++|++|+++||+||++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~iiV~NN~~ 462 (547)
T PRK08322 383 YKIWFARNYRAYEPNTCLLDNALATMGAGLPSAIAAKLVHPDRKVLAVCGDGGFMMNSQELETAVRLGLPLVVLILNDNA 462 (547)
T ss_pred HHHHHHHhcccCCCCCEEcCCCcccccchhHHHHHHHHhCCCCcEEEEEcchhHhccHHHHHHHHHhCCCeEEEEEeCCC
Confidence 876643 445555566999999999999999999999999999999999999999 999999999999999999999
Q ss_pred eeeeeee----cC-CCCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChHH
Q 007917 492 YTIEVEI----HD-GPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKE 566 (585)
Q Consensus 492 ~~~~~~~----~~-~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~~~~ 566 (585)
|++.+.. +. ..+.+++++||.++|++||+ ++++|++.+||+++|+++++ .++|+||||.+++++.++.
T Consensus 463 ~g~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~-----~~~~v~~~~eL~~al~~a~~--~~~p~lIev~v~~~~~~~~ 535 (547)
T PRK08322 463 YGMIRWKQENMGFEDFGLDFGNPDFVKYAESYGA-----KGYRVESADDLLPTLEEALA--QPGVHVIDCPVDYSENDRV 535 (547)
T ss_pred cchHHHHHHhhcCCcccccCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEecCccCcch
Confidence 9983211 11 12345567999999999999 99999999999999999986 7899999999999988876
Q ss_pred HHHHHHhh
Q 007917 567 LLEWGSRV 574 (585)
Q Consensus 567 ~~~~~~~~ 574 (585)
+....+.+
T Consensus 536 ~~~~~~~~ 543 (547)
T PRK08322 536 LNQELGEL 543 (547)
T ss_pred hhhhhhhc
Confidence 66654433
No 19
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=100.00 E-value=1e-92 Score=777.82 Aligned_cols=514 Identities=23% Similarity=0.297 Sum_probs=430.1
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHH
Q 007917 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (585)
|+++++|++.|+++||++|||+||+++.+|+++|.+ .+|++|.||||++|+|||+||||+||+ +||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~v~~~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~ 79 (548)
T PRK08978 1 MNGAQWVVHALRAQGVDTVFGYPGGAIMPVYDALYD-GGVEHLLCRHEQGAAMAAIGYARATGKVGVCIATSGPGATNLI 79 (548)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHh-cCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHH
Confidence 588999999999999999999999999999999975 489999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-CC
Q 007917 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (585)
Q Consensus 106 ~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~g 184 (585)
+||++|+.+++|||+|+|++++...+++ .+ |..||..+++++|||+.++.+++++++++++|++.|.++ +|
T Consensus 80 ~~l~~A~~~~~Pvl~i~g~~~~~~~~~~-----~~---q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~G 151 (548)
T PRK08978 80 TGLADALLDSVPVVAITGQVSSPLIGTD-----AF---QEIDVLGLSLACTKHSFLVQSLEELPEIMAEAFEIASSGRPG 151 (548)
T ss_pred HHHHHHhhcCCCEEEEecCCCccccCCC-----CC---cccchhccccCceeeEEEECCHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999998766554 22 346899999999999999999999999999999999996 69
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCC
Q 007917 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (585)
Q Consensus 185 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~ 264 (585)
||||+||.|++..+ .....+.+ .... ...++++.+++++++|.+||||+|++|.|+.++++.+++.+|||++++
T Consensus 152 PV~l~iP~dv~~~~--~~~~~~~~--~~~~--~~~~~~~~l~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~ 225 (548)
T PRK08978 152 PVLVDIPKDIQLAE--GELEPHLT--TVEN--EPAFPAAELEQARALLAQAKKPVLYVGGGVGMAGAVPALREFLAATGM 225 (548)
T ss_pred cEEEecChhhhhcc--cccccccc--ccCC--CCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHHCC
Confidence 99999999997643 21111111 0100 112245678999999999999999999999988899999999999999
Q ss_pred CeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecCCC
Q 007917 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (585)
Q Consensus 265 Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~~~ 344 (585)
||++|++|||+||++||+++|.+ |..+++..++++++||+||+||+++++..+..+..+.++.++||||.|+.+++ +.
T Consensus 226 Pv~tt~~gkg~~~~~hp~~~G~~-g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~ 303 (548)
T PRK08978 226 PAVATLKGLGAVEADHPYYLGML-GMHGTKAANLAVQECDLLIAVGARFDDRVTGKLNTFAPHAKVIHLDIDPAEIN-KL 303 (548)
T ss_pred CEEEccccCCCCCCCCccccCCC-CCCCCHHHHHHHHhCCEEEEEcCCCCccccCCccccCCCCeEEEEECCHHHhC-CC
Confidence 99999999999999999999996 77788889999999999999999998877765555566678999999999886 33
Q ss_pred ccc----cccHHHHHHHHHHHhccCccchhhhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEecCCccccc
Q 007917 345 SLG----WVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFN 420 (585)
Q Consensus 345 ~~~----~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d~G~~~~~ 420 (585)
+.. ..|++.+|++|.+.+.... +.+.+.+...... ........++++..++++|++.++++.+++.|+|++..|
T Consensus 304 ~~~~~~i~~d~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~iiv~d~g~~~~~ 381 (548)
T PRK08978 304 RQAHVALQGDLNALLPALQQPLNIDA-WRQHCAQLRAEHA-WRYDHPGEAIYAPALLKQLSDRKPADTVVTTDVGQHQMW 381 (548)
T ss_pred CCCCeEEecCHHHHHHHHHHhccchH-HHHHHHHHHHhCc-hhccCCCCCcCHHHHHHHHHHhCCCCcEEEecCcHHHHH
Confidence 322 2489999999987663221 1111111110000 000112346999999999999999999999999998765
Q ss_pred c-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCCceeee
Q 007917 421 C-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNGGYTIE 495 (585)
Q Consensus 421 ~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
. .++..+++.+|+++.++|+|||++|+|||+++|.|+++||+++|||||+ ||+|++|+++|+++||+||++|++.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~l~v~ivV~NN~~~~~~ 461 (548)
T PRK08978 382 VAQHMRFTRPENFITSSGLGTMGFGLPAAIGAQVARPDDTVICVSGDGSFMMNVQELGTIKRKQLPVKIVLLDNQRLGMV 461 (548)
T ss_pred HHHhcccCCCCeEEeCCchhhhhchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEEEeCCccHHH
Confidence 4 4555666667999999999999999999999999999999999999999 9999999999999999999999983
Q ss_pred eee----cCCCC--CCC-CCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChHH
Q 007917 496 VEI----HDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKE 566 (585)
Q Consensus 496 ~~~----~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~~~~ 566 (585)
+.. +++.+ .++ +++||.++|++||+ ++++|++++||+++|+++++ .++|+||||.+++++.+..
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~lIeV~id~~~~~~~ 532 (548)
T PRK08978 462 RQWQQLFFDERYSETDLSDNPDFVMLASAFGI-----PGQTITRKDQVEAALDTLLN--SEGPYLLHVSIDELENVWP 532 (548)
T ss_pred HHHHHHHhCCcceecCCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCEEEEEEecCcccccc
Confidence 211 22222 233 56999999999999 99999999999999999996 7899999999998886543
No 20
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=1.2e-92 Score=778.30 Aligned_cols=520 Identities=20% Similarity=0.275 Sum_probs=433.0
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (585)
.++++++|++.|++.||++|||+||+++.+|+++|.+.++|++|.||||++|+|||+||||+||+ +||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~~l~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~ 81 (563)
T PRK08527 2 KLSGSQMVCEALKEEGVKVVFGYPGGAILNIYDEIYKQNYFKHILTRHEQAAVHAADGYARASGKVGVAIVTSGPGFTNA 81 (563)
T ss_pred CCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHH
Confidence 37899999999999999999999999999999999765689999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-C
Q 007917 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (585)
Q Consensus 105 ~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (585)
++||++|+.+++|||+|+|+.++...+++ .+ |..||..+++++|||+.++++++++++.|++|++.|+++ |
T Consensus 82 ~~gla~A~~~~~Pvl~i~G~~~~~~~~~~-----~~---q~~d~~~~~~~~tk~s~~v~~~~~i~~~l~~A~~~a~s~~~ 153 (563)
T PRK08527 82 VTGLATAYMDSIPLVLISGQVPNSLIGTD-----AF---QEIDAVGISRPCVKHNYLVKSIEELPRILKEAFYIARSGRP 153 (563)
T ss_pred HHHHHHHhhcCCCEEEEecCCCccccCCC-----CC---cccchhhhhhcccceEEEcCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999988765543 22 346889999999999999999999999999999999996 6
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCCcc-CCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHh
Q 007917 184 KPVYISISCNLPGIPHPTFARDPVPFF-LAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (585)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l 262 (585)
|||||+||.|++..+.+.....+.+.. ..+. ..++++.+++++++|.+|+||+|++|.|+.++++.++|++|+|++
T Consensus 154 GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~L~~A~rPviv~G~g~~~~~a~~~l~~lae~~ 230 (563)
T PRK08527 154 GPVHIDIPKDVTATLGEFEYPKEISLKTYKPT---YKGNSRQIKKAAEAIKEAKKPLFYLGGGAILSNASEEIRELVKKT 230 (563)
T ss_pred CcEEEEcCHhHhhhhhccccccccccccCCCC---CCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHH
Confidence 999999999997632111011111100 1111 012456799999999999999999999999989999999999999
Q ss_pred CCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecC
Q 007917 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (585)
Q Consensus 263 ~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~ 342 (585)
++||++|++|||+||++||+++|.+ |..+++..++++++||+||+||+++++..+..|..+.++.++||||.|+.+++
T Consensus 231 ~~pV~tt~~~kg~~~~~hpl~~G~~-g~~~~~~~~~~l~~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~~~- 308 (563)
T PRK08527 231 GIPAVETLMARGVLRSDDPLLLGML-GMHGSYAANMAMSECDLLISLGARFDDRVTGKLSEFAKHAKIIHVDIDPSSIS- 308 (563)
T ss_pred CCCEEEccccCCCCCCCChhhcCCC-cccCCHHHHHHHHhCCEEEEeCCCCCccccCChhhcCCCCeEEEEECCHHHhC-
Confidence 9999999999999999999999996 77888899999999999999999999888766665666678999999999886
Q ss_pred CCccc----cccHHHHHHHHHHHhccCc-cchhhhhh----ccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEec
Q 007917 343 GPSLG----WVFMADFLSALAKKLRKNT-TALENYRR----IYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAE 413 (585)
Q Consensus 343 ~~~~~----~~~~~~~l~~L~~~l~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d 413 (585)
..+.. ..|++.+|++|.+.++... .....|.+ .+...... ......++++.+++++|++.++++++++.|
T Consensus 309 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d 387 (563)
T PRK08527 309 KIVNADYPIVGDLKNVLKEMLEELKEENPTTYKEWREILKRYNELHPLS-YEDSDEVLKPQWVIERVGELLGDDAIISTD 387 (563)
T ss_pred CCCCCCeEEecCHHHHHHHHHHhhhhccccchHHHHHHHHHHHHhCccc-ccCCCCCcCHHHHHHHHHhhCCCCeEEEEC
Confidence 32221 2489999999998775421 11111211 10000000 011234799999999999999999999999
Q ss_pred CCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEe
Q 007917 414 TGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLIN 488 (585)
Q Consensus 414 ~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~N 488 (585)
+|++..|. .++..+++.+|+.+.++|+|||++|+|||+++|.|+++||+++|||||+ ||+|++++++|+++||+|
T Consensus 388 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~lpvi~vV~N 467 (563)
T PRK08527 388 VGQHQMWVAQFYPFNYPRQLATSGGLGTMGYGLPAALGAKLAVPDKVVINFTGDGSILMNIQELMTAVEYKIPVINIILN 467 (563)
T ss_pred CcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEecCchhcccHHHHHHHHHhCCCeEEEEEE
Confidence 99887664 4566666667999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCceeeeeee----cCCCC--CCC-CCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCC
Q 007917 489 NGGYTIEVEI----HDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKD 561 (585)
Q Consensus 489 N~~~~~~~~~----~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~ 561 (585)
|++|++.+.. +...+ .++ .++||.++|++||+ ++++|++.+||+++|+++++ .++|+||||.+++.
T Consensus 468 N~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~lieV~v~~~ 540 (563)
T PRK08527 468 NNFLGMVRQWQTFFYEERYSETDLSTQPDFVKLAESFGG-----IGFRVTTKEEFDKALKEALE--SDKVALIDVKIDRF 540 (563)
T ss_pred CCcchhHHHHHHhhcCCceeeccCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCEEEEEEECCc
Confidence 9999983321 22222 334 36899999999999 99999999999999999986 78999999999987
Q ss_pred CChHH
Q 007917 562 DTSKE 566 (585)
Q Consensus 562 ~~~~~ 566 (585)
+.+..
T Consensus 541 ~~~~~ 545 (563)
T PRK08527 541 ENVLP 545 (563)
T ss_pred ccccc
Confidence 76543
No 21
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=2e-92 Score=779.24 Aligned_cols=522 Identities=22% Similarity=0.275 Sum_probs=428.3
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhc---CCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchH
Q 007917 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIA---EPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGL 102 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~---~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~ 102 (585)
++++++|++.|+++||+||||+||+++++|+++|.+ +++|++|.||||++|+|||+||+|+||+ +||++|+|||++
T Consensus 2 ~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~ 81 (572)
T PRK06456 2 PTGARILVDSLKREGVKVIFGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADGYARASGVPGVCTATSGPGTT 81 (572)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhhccCCCCeEEEeCcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHH
Confidence 579999999999999999999999999999999964 2469999999999999999999999999 999999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc
Q 007917 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (585)
Q Consensus 103 n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~ 182 (585)
|+++||++|+.+++|||+|+|+.++...+++. + |..||..+|+++|||+.++++++++++.|++|++.|.++
T Consensus 82 N~l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~-----~---q~~d~~~i~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~ 153 (572)
T PRK06456 82 NLVTGLITAYWDSSPVIAITGQVPRSVMGKMA-----F---QEADAMGVFENVTKYVIGIKRIDEIPQWIKNAFYIATTG 153 (572)
T ss_pred HHHHHHHHHHhhCCCEEEEecCCCccccCCCC-----c---cccchhhhhhccceeEEEeCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999988666542 2 345889999999999999999999999999999999997
Q ss_pred -CCcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHH
Q 007917 183 -SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (585)
Q Consensus 183 -~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~ 261 (585)
+|||||+||.|++..+.+.......+......+....+++..+++++++|.+|+||+|++|.|+.++++.+++++|+|+
T Consensus 154 ~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~ 233 (572)
T PRK06456 154 RPGPVVIDIPRDIFYEKMEEIKWPEKPLVKGYRDFPTRIDRLALKKAAEILINAERPIILVGTGVVWSNATPEVLELAEL 233 (572)
T ss_pred CCCcEEEecChhHhhcccccccccccccccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCcccchHHHHHHHHHH
Confidence 6999999999997643211000000000000000111245678999999999999999999999988999999999999
Q ss_pred hCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCC-CcceEEEcCCceee
Q 007917 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIK-KEKAIIVQPHRVTV 340 (585)
Q Consensus 262 l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~-~~~~i~id~~~~~~ 340 (585)
+++||++|++|||+||++||+++|++ |..++..+++.+++||+||+||+++++..+..|..+.+ ..++||||.|+.++
T Consensus 234 ~~~pv~tt~~gkg~i~~~hp~~~G~~-g~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~ 312 (572)
T PRK06456 234 LHIPIVSTFPGKTAIPHDHPLYFGPM-GYYGRAEASMAALESDAMLVVGARFSDRTFTSYDEMVETRKKFIMVNIDPTDG 312 (572)
T ss_pred hCCCEEEcCccCcCCCCCCccccccC-CCCCCHHHHHHHHhCCEEEEECCCCchhhccccccccCCCCeEEEEeCChHHh
Confidence 99999999999999999999999986 77888888899999999999999999887766654433 56899999999888
Q ss_pred cCCCccc----cccHHHHHHHHHHHhccCc-----cchh-hhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEE
Q 007917 341 GNGPSLG----WVFMADFLSALAKKLRKNT-----TALE-NYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAV 410 (585)
Q Consensus 341 ~~~~~~~----~~~~~~~l~~L~~~l~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii 410 (585)
+ +.+.. ..|++.+|+.|.+.+.... ..|. .+.................++++.++++.|++.+++++++
T Consensus 313 ~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ii 391 (572)
T PRK06456 313 E-KAIKVDVGIYGNAKIILRELIKAITELGQKRDRSAWLKRVKEYKEYYSQFYYTEENGKLKPWKIMKTIRQALPRDAIV 391 (572)
T ss_pred C-CccCCCeEEecCHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHhchhhcccccCCCcCHHHHHHHHHHhCCCCEEE
Confidence 6 33222 2488999999988775321 1121 1111100000000011234699999999999999999999
Q ss_pred EecCCccccccc-cccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEE
Q 007917 411 IAETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIF 485 (585)
Q Consensus 411 ~~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~iv 485 (585)
+.|+|++.+|.. ++..+++.+++.+.++|+|||++|+|||+++|.|+++||+++|||||+ ||+|++||++|+++|
T Consensus 392 ~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~l~i~iv 471 (572)
T PRK06456 392 TTGVGQHQMWAEVFWEVLEPRTFLTSSGMGTMGFGLPAAMGAKLARPDKVVVDLDGDGSFLMTGTNLATAVDEHIPVISV 471 (572)
T ss_pred EECCcHHHHHHHHhcCcCCCCcEEcCCCcccccchhHHHHHHHHhCCCCeEEEEEccchHhcchHHHHHHHHhCCCeEEE
Confidence 999999877653 345555566999999999999999999999999999999999999999 999999999999999
Q ss_pred EEeCCceeeeeee----cCCCC--CCC-CCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEc
Q 007917 486 LINNGGYTIEVEI----HDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFV 558 (585)
Q Consensus 486 V~NN~~~~~~~~~----~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v 558 (585)
|+||++|++.+.. +.+.+ .++ +++||.++|++||+ ++++|++.+||+++|+++++ .++|+||||.+
T Consensus 472 V~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~-----~~~~v~~~~eL~~al~~a~~--~~~p~lIev~v 544 (572)
T PRK06456 472 IFDNRTLGLVRQVQDLFFGKRIVGVDYGPSPDFVKLAEAFGA-----LGFNVTTYEDIEKSLKSAIK--EDIPAVIRVPV 544 (572)
T ss_pred EEECCchHHHHHHHHHhhCCCcccccCCCCCCHHHHHHHCCC-----eeEEeCCHHHHHHHHHHHHh--CCCCEEEEEEe
Confidence 9999999983321 22222 234 46999999999999 99999999999999999986 78999999999
Q ss_pred CCCCChH
Q 007917 559 HKDDTSK 565 (585)
Q Consensus 559 ~~~~~~~ 565 (585)
++++.+.
T Consensus 545 ~~~~~~~ 551 (572)
T PRK06456 545 DKEELAL 551 (572)
T ss_pred CcccccC
Confidence 9877553
No 22
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=100.00 E-value=5.2e-92 Score=775.74 Aligned_cols=525 Identities=19% Similarity=0.269 Sum_probs=432.2
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (585)
+|+++++|++.|+++||++|||+||+++.+|++++.+ ++|++|.||||++|+|||+||+|+||+ +||++|+|||++|+
T Consensus 1 ~~~~~~~l~~~L~~~GV~~vFGipG~~~~~l~dal~~-~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~ 79 (579)
T TIGR03457 1 KMTPSEAFVEVLVANGVTHAFGIMGSAFMDAMDLFPP-AGIRFIPVVHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNC 79 (579)
T ss_pred CCcHHHHHHHHHHHCCCCEEEEccCcchHHHHHHHhh-cCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHH
Confidence 4789999999999999999999999999999999975 589999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCC
Q 007917 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (585)
Q Consensus 105 ~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~g 184 (585)
++||++||.+++|||+|+|+.++...+++ .+ |..||..+|+++|||+.++.+++++++.|++|++.|.+++|
T Consensus 80 ~~gla~A~~~~~Pvl~I~g~~~~~~~~~~-----~~---Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~G 151 (579)
T TIGR03457 80 VTAIAAAYWAHTPVVIVTPEAGTKTIGLG-----GF---QEADQLPMFQEFTKYQGHVRHPSRMAEVLNRCFERAWREMG 151 (579)
T ss_pred HHHHHHHhhcCCCEEEEeCCCccccCCCC-----CC---cccchhhhhhcceeEEEecCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998765553 22 34588999999999999999999999999999999999889
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCC
Q 007917 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (585)
Q Consensus 185 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~ 264 (585)
||||+||.|++..+ .+...+.+..... ..+++..+++++++|.+||||+|++|+|+.++++.++|++|||++++
T Consensus 152 PV~l~iP~Dv~~~~--~~~~~~~~~~~~~----~~~~~~~i~~~~~~L~~A~rP~i~~G~g~~~~~a~~~l~~lae~~~~ 225 (579)
T TIGR03457 152 PAQLNIPRDYFYGE--IDVEIPRPVRLDR----GAGGATSLAQAARLLAEAKFPVIISGGGVVMGDAVEECKALAERLGA 225 (579)
T ss_pred CEEEEeCcchhhhh--cccccCcccccCC----CCCCHHHHHHHHHHHHhCCCCEEEECcCccccChHHHHHHHHHHhCC
Confidence 99999999997642 2111111111111 12245678999999999999999999999999999999999999999
Q ss_pred CeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCccccc-c--cccCCCcceEEEcCCceeec
Q 007917 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVG-Y--SLLIKKEKAIIVQPHRVTVG 341 (585)
Q Consensus 265 Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~-~--~~~~~~~~~i~id~~~~~~~ 341 (585)
||++|++|||.||++||+++|++ |..+++..++++++||+||+||++++++.+.. | ..+.+..++||||.|+.+++
T Consensus 226 PV~tt~~gkg~~p~~hp~~~G~~-g~~g~~~~~~~l~~aDlil~lG~~~~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~ 304 (579)
T TIGR03457 226 PVVNSYLHNDSFPASHPLWVGPL-GYQGSKAAMKLISDADVVLALGTRLGPFGTLPQYGIDYWPKNAKIIQVDANAKMIG 304 (579)
T ss_pred CEEEcccccccCCCCCchhccCC-cCcchHHHHHHHHhCCEEEEECCCCcccccccccccccCCCCCeEEEEeCCHHHhC
Confidence 99999999999999999999985 77888888999999999999999998765421 2 23344578999999999887
Q ss_pred CCCcccc----ccHHHHHHHHHHHhccCc-------------cchhhhhh----ccC-CCCC------CCCCCCCCCCCH
Q 007917 342 NGPSLGW----VFMADFLSALAKKLRKNT-------------TALENYRR----IYV-PPGI------PVKRAQNEPLRV 393 (585)
Q Consensus 342 ~~~~~~~----~~~~~~l~~L~~~l~~~~-------------~~~~~~~~----~~~-~~~~------~~~~~~~~~~~~ 393 (585)
+++..+ .|++.+|++|.+.+.... ..+..|.+ ... .... ......+.++++
T Consensus 305 -~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 383 (579)
T TIGR03457 305 -LVKKVTVGICGDAKAAAAEILQRLAGKAGDANRAERKAKIQAERSAWEQELSEMTHERDPFSLDMIVEQRQEEGNWLHP 383 (579)
T ss_pred -CCCCCCeeEecCHHHHHHHHHHhhhhcccccchhhhhhhhhhhHHHHHHHHHHHHhhccccccccccccccCCCCCcCH
Confidence 333332 488999999988774320 00112211 000 0000 000123346999
Q ss_pred HHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH--
Q 007917 394 NVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ-- 470 (585)
Q Consensus 394 ~~~~~~L~~~l~~~~ii~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~-- 470 (585)
.+++++|++.++++++++.|+|++..|. .++..+++.+|+.+.++|+|||++|+|||+++|+|+++||+++|||||+
T Consensus 384 ~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~p~~~Vv~i~GDG~f~m~ 463 (579)
T TIGR03457 384 RQVLRELEKAMPEDAIVSTDIGNINSVANSYLRFEKPRKFLAPMSFGNCGYAFPTIIGAKIAAPDRPVVAYAGDGAWGMS 463 (579)
T ss_pred HHHHHHHHHhCCCCeEEEECCchhHHHHHHhcCcCCCCeEEcCCccccccchHHHHHhhhhhCCCCcEEEEEcchHHhcc
Confidence 9999999999999999999999987665 4566667777999999999999999999999999999999999999999
Q ss_pred --hHHHHHHhCCCeEEEEEeCCceeeeee----ecCCCC--CCCCC-CCHHHHHHHhcCCCCCccEEEecCHHHHHHHHH
Q 007917 471 --EISTMIRCGQRSIIFLINNGGYTIEVE----IHDGPY--NVIKN-WDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMK 541 (585)
Q Consensus 471 --eL~ta~~~~lpv~ivV~NN~~~~~~~~----~~~~~~--~~~~~-~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~ 541 (585)
||+|++||++|+++||+||++|++.+. .+++.+ .++.. +||.++|++||+ ++++|++++||+++|+
T Consensus 464 ~~eL~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~g~~v~~~~el~~al~ 538 (579)
T TIGR03457 464 MNEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESELSFAGIADAMGA-----KGVVVDKPEDVGPALK 538 (579)
T ss_pred HHHHHHHHHhCCCeEEEEEECcchHHHHHHHHHhhCCcceeccCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHH
Confidence 999999999999999999999998321 122222 23443 799999999999 9999999999999999
Q ss_pred Hhhh-cCCCCeEEEEEEcCCCCChHHHHHHHH
Q 007917 542 TATG-EQKDSLCFIEVFVHKDDTSKELLEWGS 572 (585)
Q Consensus 542 ~a~~-~~~~gp~vIeV~v~~~~~~~~~~~~~~ 572 (585)
++++ .+.++|+||||.+++++.++.-+.+.+
T Consensus 539 ~a~~~~~~~~p~lieV~v~~~~~~~~~~~~~~ 570 (579)
T TIGR03457 539 KAIAAQAEGKTTVIEIVCTRELGDPFRRDALS 570 (579)
T ss_pred HHHhhCCCCCcEEEEEEeCCCcCCchhhhhcc
Confidence 9985 235789999999999997665544433
No 23
>PLN02470 acetolactate synthase
Probab=100.00 E-value=3.8e-92 Score=777.01 Aligned_cols=522 Identities=19% Similarity=0.247 Sum_probs=427.1
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHH
Q 007917 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (585)
Q Consensus 25 ~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (585)
.+++++++|++.|+++||++|||+||+++++|+++|.+.++|++|.||||++|+|||+||+|+||+ |||++|+|||++|
T Consensus 11 ~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N 90 (585)
T PLN02470 11 EPRKGADILVEALEREGVDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQGEVFAAEGYAKASGKVGVCIATSGPGATN 90 (585)
T ss_pred ccccHHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHH
Confidence 347899999999999999999999999999999999765579999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-
Q 007917 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (585)
Q Consensus 104 ~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (585)
+++||++||.+++|||+|+|+.++...+++ .+ |..||..+++++|||++++.+++++++.|++|++.|.++
T Consensus 91 ~l~gia~A~~~~~Pvl~I~G~~~~~~~~~~-----~~---q~~d~~~l~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~ 162 (585)
T PLN02470 91 LVTGLADALLDSVPLVAITGQVPRRMIGTD-----AF---QETPIVEVTRSITKHNYLVMDVEDIPRVIREAFFLASSGR 162 (585)
T ss_pred HHHHHHHHHhcCCcEEEEecCCChhhcCCC-----cC---cccchhhhhhhheEEEEEcCCHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999998765553 22 345889999999999999999999999999999999997
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHh
Q 007917 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (585)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l 262 (585)
+|||||+||.|++..+.......+.+...........++++.+++++++|.+|+||+|++|.|+. ++.++|++|||++
T Consensus 163 ~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~A~rPvI~~G~g~~--~a~~~l~~lae~~ 240 (585)
T PLN02470 163 PGPVLVDIPKDIQQQLAVPNWNQPMKLPGYLSRLPKPPEKSQLEQIVRLISESKRPVVYVGGGCL--NSSEELREFVELT 240 (585)
T ss_pred CCeEEEEecCchhhhhccccccccccccccCCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCChh--hhHHHHHHHHHHh
Confidence 59999999999976321110001111000000001122456799999999999999999999987 4789999999999
Q ss_pred CCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecC
Q 007917 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (585)
Q Consensus 263 ~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~ 342 (585)
++||++|++|||+||++||+++|.+ |..+.+.+++++++||+||+||+++++..+..|..+.+..++||||+|+.+++
T Consensus 241 ~~pv~tt~~gkg~~~~~hpl~~G~~-G~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~d~~~i~- 318 (585)
T PLN02470 241 GIPVASTLMGLGAFPASDELSLQML-GMHGTVYANYAVDSADLLLAFGVRFDDRVTGKLEAFASRASIVHIDIDPAEIG- 318 (585)
T ss_pred CCCEEEccCccccCCCCCcccccCC-CCCCCHHHHHHHHhCCEEEEECCCCcccccCChhhcCCCCeEEEEECCHHHhC-
Confidence 9999999999999999999999986 77888889999999999999999998887766655556668999999999887
Q ss_pred CCcccc----ccHHHHHHHHHHHhccCcc---chhhhh----hccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEE
Q 007917 343 GPSLGW----VFMADFLSALAKKLRKNTT---ALENYR----RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVI 411 (585)
Q Consensus 343 ~~~~~~----~~~~~~l~~L~~~l~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~ 411 (585)
+++..+ .|++.+|++|.+.+..... ....|. +...... ........++++.++++.|++.++++.+++
T Consensus 319 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~l~~~~~~d~iv~ 397 (585)
T PLN02470 319 KNKQPHVSVCADVKLALQGLNKLLEERKAKRPDFSAWRAELDEQKEKFP-LSYPTFGDAIPPQYAIQVLDELTDGNAIIS 397 (585)
T ss_pred CCcCCCeEEecCHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHhCh-hcccCCCCCcCHHHHHHHHHhhCCCCEEEE
Confidence 433322 4899999999887754210 111221 1110000 000111247999999999999999999999
Q ss_pred ecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEE
Q 007917 412 AETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFL 486 (585)
Q Consensus 412 ~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV 486 (585)
.|+|++..|. .++..+++.+|+.+.++|+|||++|+|||+++|+|+++||+++|||||+ ||+|++|+++|++|||
T Consensus 398 ~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~eL~Ta~~~~l~v~ivV 477 (585)
T PLN02470 398 TGVGQHQMWAAQWYKYKEPRRWLTSGGLGAMGFGLPAAIGAAAANPDAIVVDIDGDGSFIMNIQELATIHVENLPVKIMV 477 (585)
T ss_pred ECCcHHHHHHHHhcccCCCCeEEcCCccccccchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEE
Confidence 9999987654 4566666667999999999999999999999999999999999999999 9999999999999999
Q ss_pred EeCCceeeeeee----cCCCC--CCC--------CCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeE
Q 007917 487 INNGGYTIEVEI----HDGPY--NVI--------KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLC 552 (585)
Q Consensus 487 ~NN~~~~~~~~~----~~~~~--~~~--------~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~ 552 (585)
+||++|++.++. +...+ ..+ ..+||.++|++||+ ++.+|++.+||+++|+++++ .++|+
T Consensus 478 ~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~ 550 (585)
T PLN02470 478 LNNQHLGMVVQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAEGCKI-----PAARVTRKSDLREAIQKMLD--TPGPY 550 (585)
T ss_pred EeCCcchHHHHHHHHHhCCceeeeecCccccccCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCE
Confidence 999999983211 11111 111 13799999999999 99999999999999999996 78999
Q ss_pred EEEEEcCCCCChHH
Q 007917 553 FIEVFVHKDDTSKE 566 (585)
Q Consensus 553 vIeV~v~~~~~~~~ 566 (585)
||||.+++++.+..
T Consensus 551 lieV~i~~~~~~~~ 564 (585)
T PLN02470 551 LLDVIVPHQEHVLP 564 (585)
T ss_pred EEEEEeCCccCcCC
Confidence 99999998775543
No 24
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=7.6e-92 Score=772.78 Aligned_cols=519 Identities=20% Similarity=0.265 Sum_probs=431.2
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (585)
.++++++|++.|+++||++|||+||+++.+|+++|.++++|++|.+|||++|+|||+||||++|+ +||++|+|||++|+
T Consensus 12 ~~~~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~ 91 (564)
T PRK08155 12 RFTGAELIVRLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNL 91 (564)
T ss_pred cccHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHH
Confidence 37899999999999999999999999999999999766689999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-C
Q 007917 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (585)
Q Consensus 105 ~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (585)
++||++|+.+++|||+|+|+.++...+++ .+ |..||..+|+++|||+.++++++++++.+++|++.|.++ +
T Consensus 92 l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~---q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~ 163 (564)
T PRK08155 92 VTAIADARLDSIPLVCITGQVPASMIGTD-----AF---QEVDTYGISIPITKHNYLVRDIEELPQVISDAFRIAQSGRP 163 (564)
T ss_pred HHHHHHHHhcCCCEEEEeccCCcccccCC-----Cc---cccchhhhhhccceEEEEcCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998766553 22 345889999999999999999999999999999999987 6
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhC
Q 007917 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (585)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~ 263 (585)
|||||+||.|++..+.+.. ..+.+.. ... . ..++++.+++++++|.+||||+|++|.|+.++++.+++.+|||+++
T Consensus 164 GPV~i~iP~Dv~~~~~~~~-~~~~~~~-~~~-~-~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~~ 239 (564)
T PRK08155 164 GPVWIDIPKDVQTAVIELE-ALPAPAE-KDA-A-PAFDEESIRDAAAMINAAKRPVLYLGGGVINSGAPARARELAEKAQ 239 (564)
T ss_pred CcEEEEcCHhHHhhhcccc-cCCCccc-cCC-C-CCCCHHHHHHHHHHHHhCCCCEEEECCCccccchHHHHHHHHHHHC
Confidence 9999999999976321111 1111110 000 1 1123457899999999999999999999998889999999999999
Q ss_pred CCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecCC
Q 007917 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (585)
Q Consensus 264 ~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~~ 343 (585)
+||++|++|||+||++||+++|.+ |..+.+.+++++++||+||+||+++++..+..+..+.+..++||||.|+..++ +
T Consensus 240 ~pv~tt~~~kg~i~~~hp~~~G~~-g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~-~ 317 (564)
T PRK08155 240 LPTTMTLMALGMLPKAHPLSLGML-GMHGARSTNYILQEADLLIVLGARFDDRAIGKTEQFCPNAKIIHVDIDRAELG-K 317 (564)
T ss_pred CCEEEcccccccCCCCChhhccCC-CCCCCHHHHHHHHhCCEEEEECCCCCccccCCHhhcCCCCeEEEEECCHHHhC-C
Confidence 999999999999999999999997 77778888899999999999999999887765555556678999999999886 3
Q ss_pred Cccc----cccHHHHHHHHHHHhccCcc-ch-hhhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEecCCcc
Q 007917 344 PSLG----WVFMADFLSALAKKLRKNTT-AL-ENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDS 417 (585)
Q Consensus 344 ~~~~----~~~~~~~l~~L~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d~G~~ 417 (585)
.+.. ..|++.+|++|++.+..... .| +++........ ........++++.++++.|++.+|++.+++.|+|++
T Consensus 318 ~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~v~~~l~~~l~~~~iv~~D~G~~ 396 (564)
T PRK08155 318 IKQPHVAIQADVDDVLAQLLPLVEAQPRAEWHQLVADLQREFP-CPIPKADDPLSHYGLINAVAACVDDNAIITTDVGQH 396 (564)
T ss_pred CcCCCeEEecCHHHHHHHHHHhhcccchHHHHHHHHHHHHhCh-hhcccCCCCcCHHHHHHHHHHhCCCCeEEEECCchH
Confidence 3222 34899999999887754221 12 11111110000 001112347999999999999999999999999998
Q ss_pred cccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCCce
Q 007917 418 WFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNGGY 492 (585)
Q Consensus 418 ~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~~~ 492 (585)
..|. .++..+++.+|+.+.++|+|||++|+|+|+++|.|+++||+++|||||+ ||+|++++++|+++||+||++|
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~~~~~eL~ta~~~~lpvi~vV~NN~~~ 476 (564)
T PRK08155 397 QMWTAQAYPLNRPRQWLTSGGLGTMGFGLPAAIGAALANPERKVLCFSGDGSLMMNIQEMATAAENQLDVKIILMNNEAL 476 (564)
T ss_pred HHHHHHhccccCCCeEEeCCCcccccchhHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEEEeCCcc
Confidence 7654 4566666667999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred eeeee----ecCCCC--CCC-CCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChH
Q 007917 493 TIEVE----IHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSK 565 (585)
Q Consensus 493 ~~~~~----~~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~~~ 565 (585)
++.+. .+...+ .++ .++||.++|++||+ ++++|++.+||+++|+++++ .++|+||||.+++++.+.
T Consensus 477 g~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~lIeV~~~~~~~~~ 549 (564)
T PRK08155 477 GLVHQQQSLFYGQRVFAATYPGKINFMQIAAGFGL-----ETCDLNNEADPQAALQEAIN--RPGPALIHVRIDAEEKVY 549 (564)
T ss_pred cccHHHHHHhcCCCeeeccCCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEeCCCcccC
Confidence 98321 122222 223 46899999999999 99999999999999999996 789999999999887654
Q ss_pred H
Q 007917 566 E 566 (585)
Q Consensus 566 ~ 566 (585)
.
T Consensus 550 ~ 550 (564)
T PRK08155 550 P 550 (564)
T ss_pred C
Confidence 3
No 25
>PRK08617 acetolactate synthase; Reviewed
Probab=100.00 E-value=1.2e-91 Score=769.89 Aligned_cols=521 Identities=20% Similarity=0.238 Sum_probs=430.3
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHH
Q 007917 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (585)
Q Consensus 25 ~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (585)
+.++++++|++.|+++||++|||+||+++.+|+++|.+ ++|++|.+|||++|+|||+||+|+||+ +||++|+|||++|
T Consensus 3 ~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~-~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N 81 (552)
T PRK08617 3 KKKYGADLVVDSLINQGVKYVFGIPGAKIDRVFDALED-SGPELIVTRHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSN 81 (552)
T ss_pred ccccHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhh-CCCCEEEeccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhH
Confidence 35789999999999999999999999999999999975 589999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-
Q 007917 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (585)
Q Consensus 104 ~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (585)
+++||++|+.+++|||+|+|+.++...+++ . .|..||.++|+++|||+.++++++++++.+++|++.|.++
T Consensus 82 ~l~gl~~A~~~~~PvlvisG~~~~~~~~~~-----~---~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~ 153 (552)
T PRK08617 82 LATGLVTATAEGDPVVAIGGQVKRADRLKR-----T---HQSMDNVALFRPITKYSAEVQDPDNLSEVLANAFRAAESGR 153 (552)
T ss_pred hHHHHHHHhhcCCCEEEEecCCcccccCCC-----C---ccccchhhhhhhhcceEEEeCCHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999988766553 2 2356899999999999999999999999999999999997
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHh
Q 007917 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (585)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l 262 (585)
||||||+||.|++.. ++.... ......+ ....++++.+++++++|.+||||+|++|.|+.++++.+++++|||++
T Consensus 154 ~GPV~l~iP~dv~~~--~~~~~~-~~~~~~~--~~~~~~~~~i~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~ 228 (552)
T PRK08617 154 PGAAFVSLPQDVVDA--PVTSKA-IAPLSKP--KLGPASPEDINYLAELIKNAKLPVLLLGMRASSPEVTAAIRRLLERT 228 (552)
T ss_pred CCcEEEeChhhhhhc--cccccc-cccccCC--CCCCCCHHHHHHHHHHHHhCCCCEEEECCCcchhhHHHHHHHHHHHh
Confidence 699999999999764 322111 1100111 11112345789999999999999999999999888999999999999
Q ss_pred CCCeEEccCCccCCCCCCC-CceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeec
Q 007917 263 GYPIAIMPSGKGLVPEHHP-HFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (585)
Q Consensus 263 ~~Pv~~t~~gkg~~~~~hp-~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~ 341 (585)
++||++|++|||+||++|| +++|.+ |..+++.+++++++||+||+||+++.++.+..|... ++.++||||.|+..++
T Consensus 229 ~~pV~tt~~gkg~~~~~hp~~~~G~~-g~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~i~id~d~~~~~ 306 (552)
T PRK08617 229 NLPVVETFQAAGVISRELEDHFFGRV-GLFRNQPGDELLKKADLVITIGYDPIEYEPRNWNSE-GDATIIHIDVLPAEID 306 (552)
T ss_pred CCCEEeccccCccCCCCCchhhccCC-cCCCcHHHHHHHHhCCEEEEecCccccccccccccC-CCCcEEEEeCChHHhC
Confidence 9999999999999999998 699985 777888888999999999999998876665445432 3468999999999886
Q ss_pred CCCcccc----ccHHHHHHHHHHHhccCc------cchhhhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEE
Q 007917 342 NGPSLGW----VFMADFLSALAKKLRKNT------TALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVI 411 (585)
Q Consensus 342 ~~~~~~~----~~~~~~l~~L~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~ 411 (585)
..+..+ .|++.+|++|++.++... .+.+.|++...............++++.++++.|++.++++.+++
T Consensus 307 -~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ii~ 385 (552)
T PRK08617 307 -NYYQPERELIGDIAATLDLLAEKLDGLSLSPQSLEILEELRAQLEELAERPARLEEGAVHPLRIIRALQDIVTDDTTVT 385 (552)
T ss_pred -CccCCCeEEeCCHHHHHHHHHHhhhcccCccchHHHHHHHHHHHHHhhhhhcccCCCCcCHHHHHHHHHHhcCCCcEEE
Confidence 333332 489999999988765321 011222211100000001122346999999999999999999999
Q ss_pred ecCCccccccc-cccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEE
Q 007917 412 AETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFL 486 (585)
Q Consensus 412 ~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV 486 (585)
.|.|++..|.. ++...++.+++.+.++|+|||++|+|||+++|.|+++||+++|||||+ ||+|+++|++|+++||
T Consensus 386 ~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~~vV 465 (552)
T PRK08617 386 VDVGSHYIWMARYFRSYEPRHLLFSNGMQTLGVALPWAIAAALVRPGKKVVSVSGDGGFLFSAMELETAVRLKLNIVHII 465 (552)
T ss_pred eCCcHHHHHHHHhccccCCCeEEecCccccccccccHHHhhHhhcCCCcEEEEEechHHhhhHHHHHHHHHhCCCeEEEE
Confidence 99999876643 444455566888889999999999999999999999999999999999 9999999999999999
Q ss_pred EeCCceeeeeee----cCC-CCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCC
Q 007917 487 INNGGYTIEVEI----HDG-PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKD 561 (585)
Q Consensus 487 ~NN~~~~~~~~~----~~~-~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~ 561 (585)
+||++|++.+.. +.. ...+++++||.++|++||+ ++++|++++||+++|+++++ .++|+||||.++++
T Consensus 466 ~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~eL~~al~~a~~--~~~p~liev~~~~~ 538 (552)
T PRK08617 466 WNDGHYNMVEFQEEMKYGRSSGVDFGPVDFVKYAESFGA-----KGLRVTSPDELEPVLREALA--TDGPVVIDIPVDYS 538 (552)
T ss_pred EECCccchHHHHHHhhcCCcccCCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCcEEEEEEeccc
Confidence 999999983211 111 2234567999999999999 99999999999999999986 78999999999999
Q ss_pred CChHHHHH
Q 007917 562 DTSKELLE 569 (585)
Q Consensus 562 ~~~~~~~~ 569 (585)
+.++.++.
T Consensus 539 ~~~~~~~~ 546 (552)
T PRK08617 539 DNIKLMEQ 546 (552)
T ss_pred ccchhhhh
Confidence 98776643
No 26
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=100.00 E-value=1.1e-91 Score=768.21 Aligned_cols=515 Identities=19% Similarity=0.252 Sum_probs=425.4
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHHHH
Q 007917 29 LGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNA 107 (585)
Q Consensus 29 ~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~g 107 (585)
++++|++.|+++||++|||+||+++.+|++++.+ ++|++|.||||++|+|||+||+|+||+ +||++|+|||++|+++|
T Consensus 1 ~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~dal~~-~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~g 79 (539)
T TIGR02418 1 GADLVVDQLENQGVRYVFGIPGAKIDRVFDALED-KGIELIVVRHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTG 79 (539)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhh-CCCCEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHH
Confidence 4799999999999999999999999999999975 589999999999999999999999999 99999999999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-CCcE
Q 007917 108 IAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SKPV 186 (585)
Q Consensus 108 l~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~gPV 186 (585)
|++|+.+++|||+|+|+.++...+++ . +|..||.++|+++|||+.++.+++++++.+++|++.|.++ ||||
T Consensus 80 l~~A~~~~~Pvl~I~G~~~~~~~~~~-----~---~q~~d~~~~~~~~tk~~~~i~~~~~~~~~~~~A~~~a~~~~~GPV 151 (539)
T TIGR02418 80 LATANSEGDPVVAIGGQVKRADLLKL-----T---HQSMDNVALFRPITKYSAEVQDPDALSEVVANAFRAAESGKPGAA 151 (539)
T ss_pred HHHHhhcCCCEEEEeCCCcccccccC-----c---ccccchhhhhhcceeeeeecCCHHHHHHHHHHHHHHHhcCCCCCE
Confidence 99999999999999999888755543 1 2346889999999999999999999999999999999986 6999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCe
Q 007917 187 YISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (585)
Q Consensus 187 ~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv 266 (585)
||+||.|++.. ++... +.+....+. . ..+.+..+++++++|.+||||+|++|.|+.++++.+++++|||++|+||
T Consensus 152 ~l~iP~dv~~~--~~~~~-~~~~~~~~~-~-~~~~~~~i~~~~~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~g~pv 226 (539)
T TIGR02418 152 FVSLPQDVVDS--PVSVK-AIPASYAPK-L-GAAPDDAIDEVAEAIQNAKLPVLLLGLRASSPETTEAVRRLLKKTQLPV 226 (539)
T ss_pred EEEcChhHhhC--ccccc-ccCcccCCC-C-CCCCHHHHHHHHHHHHcCCCCEEEECCCcCcccHHHHHHHHHHHhCCCE
Confidence 99999999764 33211 111001111 1 1123457899999999999999999999998899999999999999999
Q ss_pred EEccCCccCCCCCC-CCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecCCCc
Q 007917 267 AIMPSGKGLVPEHH-PHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPS 345 (585)
Q Consensus 267 ~~t~~gkg~~~~~h-p~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~~~~ 345 (585)
++|++|||.||++| |+++|++ |..+++.+++++++||+||++|+++.++.+..|... .+.++||||.|+.+++ ..+
T Consensus 227 ~tt~~gkg~i~~~~~~~~~G~~-G~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~-~~~~~i~id~d~~~~~-~~~ 303 (539)
T TIGR02418 227 VETFQGAGAVSRELEDHFFGRV-GLFRNQPGDRLLKQADLVITIGYDPIEYEPRNWNSE-NDATIVHIDVEPAQID-NNY 303 (539)
T ss_pred EEccccCcCCCCCCChhhcccC-cCCCcHHHHHHHHhCCEEEEecCcccccCccccCcC-CCCeEEEEeCChHHcC-Ccc
Confidence 99999999999997 7899985 888888889999999999999999887776666532 2358999999999887 333
Q ss_pred ccc----ccHHHHHHHHHHHhccCc--cc---h-hhhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEecCC
Q 007917 346 LGW----VFMADFLSALAKKLRKNT--TA---L-ENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETG 415 (585)
Q Consensus 346 ~~~----~~~~~~l~~L~~~l~~~~--~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d~G 415 (585)
..+ .|++.+|++|.+.++... .. | ..+++.+.............++++.++++.|++.++++++++.|+|
T Consensus 304 ~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ii~~d~G 383 (539)
T TIGR02418 304 QPDLELVGDIASTLDLLAERIPGYELPPDALAILEDLKQQREALDRVPATLKQAHLHPLEIIKAMQAIVTDDVTVTVDMG 383 (539)
T ss_pred CCCeEEecCHHHHHHHHHHhhccccCccchHHHHHHHHHHHHHhhhccccCCCCCcCHHHHHHHHHhhCCCCCEEEECCc
Confidence 322 488999999988775421 11 1 1111110000000001123469999999999999999999999999
Q ss_pred cccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCC
Q 007917 416 DSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNG 490 (585)
Q Consensus 416 ~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~ 490 (585)
++..|. .++....+.+++.+.++|+|||++|+|||+++|.|+++||+++|||||+ ||+|++||++|+++||+||+
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~~~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpi~ivV~NN~ 463 (539)
T TIGR02418 384 SHYIWMARYFRSYRARHLLISNGMQTLGVALPWAIGAALVRPNTKVVSVSGDGGFLFSSMELETAVRLKLNIVHIIWNDN 463 (539)
T ss_pred HHHHHHHHhcccCCCCceecCCCccccccHHHHHHHHHHhCCCCcEEEEEcchhhhchHHHHHHHHHhCCCeEEEEEECC
Confidence 987664 3455555566888899999999999999999999999999999999999 99999999999999999999
Q ss_pred ceeeeeee----cCC-CCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChH
Q 007917 491 GYTIEVEI----HDG-PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSK 565 (585)
Q Consensus 491 ~~~~~~~~----~~~-~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~~~ 565 (585)
+|++.+.. +.. ...+++++||.++|++||+ ++.+|++++||+++|+++++ .++|+||||.+++++.+.
T Consensus 464 ~y~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~V~~~~eL~~al~~a~~--~~~p~lIev~v~~~~~~~ 536 (539)
T TIGR02418 464 GYNMVEFQEEMKYQRSSGVDFGPIDFVKYAESFGA-----KGLRVESPDQLEPTLRQAME--VEGPVVVDIPVDYSDNPK 536 (539)
T ss_pred cchHHHHHHHHhcCCcccccCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCEEEEEEecCccccc
Confidence 99983211 121 2235578999999999999 99999999999999999986 789999999999998875
Q ss_pred HH
Q 007917 566 EL 567 (585)
Q Consensus 566 ~~ 567 (585)
.|
T Consensus 537 ~~ 538 (539)
T TIGR02418 537 LM 538 (539)
T ss_pred cC
Confidence 43
No 27
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=1.2e-91 Score=771.62 Aligned_cols=520 Identities=19% Similarity=0.239 Sum_probs=431.0
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (585)
+++++++|++.|+++||++|||+||+++.+|++++.+ .+|++|.+|||++|+|||+||+|+||+ +||++|+|||++|+
T Consensus 15 ~~~~~~~i~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N~ 93 (571)
T PRK07710 15 LMTGAQMLIEALEKEGVEVIFGYPGGAVLPLYDALYD-CGIPHILTRHEQGAIHAAEGYARISGKPGVVIATSGPGATNV 93 (571)
T ss_pred cchHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHh-cCCcEEEeCCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHH
Confidence 4789999999999999999999999999999999975 479999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-C
Q 007917 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (585)
Q Consensus 105 ~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (585)
++||++|+.+++|||+|+|+.++...+++ .+ |..||..+|+++|||++++.+++++++.+++|++.|.++ +
T Consensus 94 ~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~-----~~---q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~ 165 (571)
T PRK07710 94 VTGLADAMIDSLPLVVFTGQVATSVIGSD-----AF---QEADIMGITMPVTKHNYQVRKASDLPRIIKEAFHIATTGRP 165 (571)
T ss_pred HHHHHHHhhcCCCEEEEeccCCccccCCC-----Cc---cccchhhhhhcccceEEecCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998866554 22 346899999999999999999999999999999999997 6
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhC
Q 007917 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (585)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~ 263 (585)
|||||+||.|++..+.+.......+. ........+++..+++++++|.+|+||+|++|.|+.++++.++|++|+|+++
T Consensus 166 GPV~l~iP~Dv~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~~ 243 (571)
T PRK07710 166 GPVLIDIPKDMVVEEGEFCYDVQMDL--PGYQPNYEPNLLQIRKLVQAVSVAKKPVILAGAGVLHAKASKELTSYAEQQE 243 (571)
T ss_pred CcEEEEcChhHhhccccccccccccc--cCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcCccchHHHHHHHHHHhC
Confidence 99999999999763211100100011 0000001124556899999999999999999999988889999999999999
Q ss_pred CCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecCC
Q 007917 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (585)
Q Consensus 264 ~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~~ 343 (585)
+||++|++|||.||++||+++|++ |..+++.++++++++|+||+||+++++..+..|..+.++.++||||.|+..++ +
T Consensus 244 ~pv~tt~~~kg~i~~~hpl~~G~~-G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~ig-~ 321 (571)
T PRK07710 244 IPVVHTLLGLGGFPADHPLFLGMA-GMHGTYTANMALYECDLLINIGARFDDRVTGNLAYFAKEATVAHIDIDPAEIG-K 321 (571)
T ss_pred CCEEEcCccCccCCCCCccccCCC-CCCCCHHHHHHHHhCCEEEEeCCCCCccccCchhhcCCCCeEEEEECCHHHhc-C
Confidence 999999999999999999999985 88889999999999999999999999887765555556678999999998887 3
Q ss_pred Cccc----cccHHHHHHHHHHHhccCc--cchh-hhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEecCCc
Q 007917 344 PSLG----WVFMADFLSALAKKLRKNT--TALE-NYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGD 416 (585)
Q Consensus 344 ~~~~----~~~~~~~l~~L~~~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d~G~ 416 (585)
.+.. ..|++.+|++|.+.+.... ..|. .++....... ........++++..+++.|++.++++++++.|+|+
T Consensus 322 ~~~~~~~i~~D~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~ 400 (571)
T PRK07710 322 NVPTEIPIVADAKQALQVLLQQEGKKENHHEWLSLLKNWKEKYP-LSYKRNSESIKPQKAIEMLYEITKGEAIVTTDVGQ 400 (571)
T ss_pred cCCCCeEEecCHHHHHHHHHHhhhccCCcHHHHHHHHHHHHhCh-hhhcCCCCCcCHHHHHHHHHhhCCCCeEEEECCcH
Confidence 3222 2489999999988765421 1121 1111100000 00011134699999999999999999999999999
Q ss_pred ccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCCc
Q 007917 417 SWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNGG 491 (585)
Q Consensus 417 ~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~~ 491 (585)
+..|. .++..+++.+|+.+.++|+|||++|+|||+++|.|+++||+++|||||+ ||+|++||++|+++||+||++
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaAiGaala~p~~~vv~i~GDGsf~m~~~eL~ta~r~~lpi~ivV~NN~~ 480 (571)
T PRK07710 401 HQMWAAQYYPFKTPDKWVTSGGLGTMGFGLPAAIGAQLAKPDETVVAIVGDGGFQMTLQELSVIKELSLPVKVVILNNEA 480 (571)
T ss_pred HHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhHHHHHHHHHhCCCeEEEEEECch
Confidence 87664 4466666667999999999999999999999999999999999999999 999999999999999999999
Q ss_pred eeeeeee----cCCCC--CCC-CCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCCh
Q 007917 492 YTIEVEI----HDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTS 564 (585)
Q Consensus 492 ~~~~~~~----~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~~ 564 (585)
|++.+.. ++..+ ..+ .++||.++|++||+ ++++|++.+||+++|+++++ .++|+||||.+++++.+
T Consensus 481 ~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~lieV~vd~~~~~ 553 (571)
T PRK07710 481 LGMVRQWQEEFYNQRYSHSLLSCQPDFVKLAEAYGI-----KGVRIDDELEAKEQLQHAIE--LQEPVVIDCRVLQSEKV 553 (571)
T ss_pred HHHHHHHHHHHhCCcceeccCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCEEEEEEecCcccc
Confidence 9983221 22222 223 46999999999999 99999999999999999986 78999999999988765
Q ss_pred HH
Q 007917 565 KE 566 (585)
Q Consensus 565 ~~ 566 (585)
..
T Consensus 554 ~~ 555 (571)
T PRK07710 554 MP 555 (571)
T ss_pred cc
Confidence 43
No 28
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=1.6e-90 Score=695.04 Aligned_cols=556 Identities=62% Similarity=0.983 Sum_probs=510.6
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcchHHH
Q 007917 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSV 104 (585)
Q Consensus 25 ~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~n~ 104 (585)
..++++++|+++|.+.||++|||+||+.|+.|+|-|+..+++||+.|+||.+|||+||||||..|.++|++|.|+|.+.+
T Consensus 2 ~~i~~G~YLf~RL~q~gvksvfgVPGDFNL~LLD~l~~~~~lrwvGn~NELNaAYAADGYAR~~Gi~a~VtTfgVGeLSA 81 (561)
T KOG1184|consen 2 SPITLGEYLFRRLVQAGVKTVFGVPGDFNLSLLDKLYAVPGLRWVGNCNELNAAYAADGYARSKGIGACVTTFGVGELSA 81 (561)
T ss_pred CceeHHHHHHHHHHHcCCceeEECCCcccHHHHHHhhhcCCceeecccchhhhhhhhcchhhhcCceEEEEEeccchhhh
Confidence 35789999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCC
Q 007917 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (585)
Q Consensus 105 ~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~g 184 (585)
++|+++||++++|||+|+|.+++..++++.++||++|+++|..+.+|++.+++++..+.+.+++++.|++|++.|....+
T Consensus 82 lNGIAGsYAE~vpVihIVG~Pnt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~~ID~aI~~~~~~~r 161 (561)
T KOG1184|consen 82 LNGIAGAYAENVPVIHIVGVPNTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPEQIDKAIRTALKESK 161 (561)
T ss_pred hcccchhhhhcCCEEEEECCCCcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCC
Q 007917 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (585)
Q Consensus 185 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~ 264 (585)
||||.||.|+.....+...+.+.+....+.+++.....+.++.+++++.++++|+|++|.-.++.++.++..+|++.++.
T Consensus 162 PVYi~iP~n~~~~~~~~~~l~~~p~~~~~~~s~~e~~~~~v~~i~e~i~~~~~Pvil~~~~~~r~~~~~~~~~l~~~~~~ 241 (561)
T KOG1184|consen 162 PVYIGVPANLADLPVPAFGLLPVPLDLSPKPSNKEGLEEAVDAILELINKAKKPVILGDPKLRRAKAESAFVELADATGF 241 (561)
T ss_pred CeEEEeecccccCcCCcccCCCCCcccCCCCCcHHHHHHHHHHHHHHhhhccCCeeeccccccHHHHHHHHHHHHHhhCC
Confidence 99999999998765444433344555555556556666789999999999999999999999999999999999999999
Q ss_pred CeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecCCC
Q 007917 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (585)
Q Consensus 265 Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~~~ 344 (585)
|++.|++|||.++|+||.|.|+|+|..+.+...+.++.+|++|.+|.-++++++.+|+...++.+.++++.|...+. ..
T Consensus 242 p~~vtp~gKg~i~E~hp~y~Gvy~G~vs~~~~~e~vesaDlil~~G~~~sd~ss~~~~~~~k~~~~i~~~~d~v~i~-~~ 320 (561)
T KOG1184|consen 242 PVFVTPMGKGFIPESHPHYGGVYWGAVSTPFVKEIVESADLIIFAGPLFNDYSSGGFSYLYKKKNAIEFHSDRVKIR-NA 320 (561)
T ss_pred CeeEeecccccccCcCCceeeEEecccccHhHHHHHhhcCeEEEecccccccccceeEeecCccceEEEecceEEec-cc
Confidence 99999999999999999999999999999999999999999999999999999999998888889999999998885 56
Q ss_pred ccccccHHHHHHHHHHHhccCccchhhhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEecCCccccccccc
Q 007917 345 SLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKL 424 (585)
Q Consensus 345 ~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~~~~ 424 (585)
.++.++++.+|+.|+++++......+++.+.+..+..+....+..+++...++..+++.+.+++++++|+|.++|....+
T Consensus 321 ~f~~v~mk~~l~~Lak~I~~~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~d~v~~ETG~S~F~~~~~ 400 (561)
T KOG1184|consen 321 TFGGVLMKDFLQELAKRIKKNKTSYENYVRIPVPEPKPLACPPNAPLRQEWMWNHIQKFLSSGDVVIAETGDSWFGINQT 400 (561)
T ss_pred cccceeHHHHHHHHHHhhcccccchhcccccCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCCceEEEecccceecceee
Confidence 78888999999999999987765544444333333333344555679999999999999999999999999999999899
Q ss_pred cccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCCceeeeeeecC
Q 007917 425 RLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNGGYTIEVEIHD 500 (585)
Q Consensus 425 ~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~ 500 (585)
.+|.+..+.++..||++||++|+++|++.|.|+++|++++|||||+ |+.|+.|+++|..|+|+||+||.+++.+|+
T Consensus 401 ~fP~g~~~~~q~~wgsIG~svga~lG~a~a~~e~rvilfiGDGs~qlTvQeiStmir~gl~~~if~~NN~GYTIE~~IH~ 480 (561)
T KOG1184|consen 401 KFPKGCGYESQMQWGSIGWSVGATLGYAQAAPEKRVILFIGDGSFQLTVQEISTMIRWGLKPIIFLINNGGYTIEVEIHD 480 (561)
T ss_pred ccccccceEEEEEEeeccccchhhhhhhhccCCceEEEEecCccceeeHHHHHHHHhcCCCcEEEEEeCCceEEEEeecC
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999998
Q ss_pred CCCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChHHHHHHHHhhhhhcCC
Q 007917 501 GPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSR 580 (585)
Q Consensus 501 ~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~~~~~~~~~~~~~~~~~~ 580 (585)
++|+++.+|||.++.++||...++|+..++.+.+|+.++++++...+.+++.+|||+++.+|.|+.+.+|++..++.|+|
T Consensus 481 ~~Yn~I~~Wd~~~l~~afg~~~gk~~~~~v~~~~e~~~~~~~~~~~~~~~i~liEv~l~~~D~p~~L~~~~~~~a~~n~k 560 (561)
T KOG1184|consen 481 GPYNDIQNWDYTALLEAFGAGEGKYETHKVRTEEELVEAIKDATFEKNDKIRLIEVILPVDDAPKELLEWGSLVAAANSK 560 (561)
T ss_pred CCccccccchHHHHHHhhcCccceeEEeeeccchHHHHHHhhhhhcccCceEEEEEecCcccChHHHHHHHHHhhhcccC
Confidence 88999999999999999999878899999999999999999998545678999999999999999999999999998876
Q ss_pred C
Q 007917 581 P 581 (585)
Q Consensus 581 ~ 581 (585)
+
T Consensus 561 ~ 561 (561)
T KOG1184|consen 561 P 561 (561)
T ss_pred C
Confidence 4
No 29
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=100.00 E-value=2.1e-91 Score=770.37 Aligned_cols=522 Identities=21% Similarity=0.270 Sum_probs=426.9
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC---CCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcch
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGG 101 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~---~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~ 101 (585)
.++++++|++.|+++||++|||+||+++.+|+++|.+. ++|++|.||||++|+|||+||+|+||+ +||++|+|||+
T Consensus 9 ~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~d~l~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~ 88 (585)
T CHL00099 9 EKTGAFALIDSLVRHGVKHIFGYPGGAILPIYDELYAWEKKGLIKHILVRHEQGAAHAADGYARSTGKVGVCFATSGPGA 88 (585)
T ss_pred cccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHhcCcCCCceEEEecCHHHHHHHHHHHHHhcCCcEEEEECCCCcH
Confidence 47899999999999999999999999999999999642 359999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhh
Q 007917 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK 181 (585)
Q Consensus 102 ~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~ 181 (585)
+|+++||++|+.+++|||+|+|+.++...+++ .+ |..||..+++++|||+.++.+++++++.+++||+.|.+
T Consensus 89 ~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-----~~---q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~ 160 (585)
T CHL00099 89 TNLVTGIATAQMDSVPLLVITGQVGRAFIGTD-----AF---QEVDIFGITLPIVKHSYVVRDARDISRIVAEAFYIAKH 160 (585)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCCCccccCCC-----Cc---cccchhhhhcCceeEEEEeCCHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999988766553 22 24588899999999999999999999999999999998
Q ss_pred c-CCcEEEEecCCCCCCCCCCCCCCCCC--ccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHH
Q 007917 182 E-SKPVYISISCNLPGIPHPTFARDPVP--FFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIEL 258 (585)
Q Consensus 182 ~-~gPV~i~iP~dv~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~l 258 (585)
+ +|||||+||.|++..+.+.....+.. ...........++++.+++++++|.+||||+|++|+|+.++++.++|++|
T Consensus 161 ~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~l 240 (585)
T CHL00099 161 GRPGPVLIDIPKDVGLEKFDYYPPEPGNTIIKILGCRPIYKPTIKRIEQAAKLILQSSQPLLYVGGGAIISDAHQEITEL 240 (585)
T ss_pred CCCCeEEEecChhhhhhhcccccccccccccccccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCCchhchHHHHHHH
Confidence 6 69999999999976321111110100 00111001112345679999999999999999999999988999999999
Q ss_pred HHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCce
Q 007917 259 ADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRV 338 (585)
Q Consensus 259 ae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~ 338 (585)
||++|+||+||++|||+||++||+++|++ |..++..++.++.+||+||+||+++++..+..|..+.++.++||||.|+.
T Consensus 241 ae~lg~PV~tt~~~kg~~~~~hpl~~G~~-G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~ 319 (585)
T CHL00099 241 AELYKIPVTTTLMGKGIFDEDHPLCLGML-GMHGTAYANFAVSECDLLIALGARFDDRVTGKLDEFACNAQVIHIDIDPA 319 (585)
T ss_pred HHHHCCCEEEccccCcCCCCCCCcccCCC-CCCCCHHHHHHHHhCCEEEEECCCCcccccCCHhHcCCCCeEEEEECCHH
Confidence 99999999999999999999999999996 77888889999999999999999999887765555556678999999998
Q ss_pred eecCCCcccc----ccHHHHHHHHHHHhccCcc-----chhhhhh---ccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCC
Q 007917 339 TVGNGPSLGW----VFMADFLSALAKKLRKNTT-----ALENYRR---IYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSG 406 (585)
Q Consensus 339 ~~~~~~~~~~----~~~~~~l~~L~~~l~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 406 (585)
+++ +.+..+ .|++.+|++|.+.+..... ....|.+ ...............++++.+++++|++.+|
T Consensus 320 ~i~-~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~- 397 (585)
T CHL00099 320 EIG-KNRIPQVAIVGDVKKVLQELLELLKNSPNLLESEQTQAWRERINRWRKEYPLLIPKPSTSLSPQEVINEISQLAP- 397 (585)
T ss_pred HhC-CCCCCCeEEecCHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHhChhhccccCCCcCHHHHHHHHHhhCC-
Confidence 887 433332 4889999999887753211 0111211 0000000000112347999999999999999
Q ss_pred CCEEEecCCccccccccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCe
Q 007917 407 DTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRS 482 (585)
Q Consensus 407 ~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv 482 (585)
+++++.|+|++..|...+...++.+|+.+.++|+|||++|+|||+++|.|+++||+|+|||||+ ||+|+++|++|+
T Consensus 398 d~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGaala~p~~~vv~i~GDG~f~m~~~eL~Ta~~~~l~~ 477 (585)
T CHL00099 398 DAYFTTDVGQHQMWAAQFLKCKPRKWLSSAGLGTMGYGLPAAIGAQIAHPNELVICISGDASFQMNLQELGTIAQYNLPI 477 (585)
T ss_pred CeEEEECCcHHHHHHHHhccCCCCcEEcCccccchhhhHHHHHHHHHhCCCCeEEEEEcchhhhhhHHHHHHHHHhCCCe
Confidence 8999999999876654332223456898999999999999999999999999999999999999 999999999999
Q ss_pred EEEEEeCCceeeeee----ecCCCCC----CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEE
Q 007917 483 IIFLINNGGYTIEVE----IHDGPYN----VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFI 554 (585)
Q Consensus 483 ~ivV~NN~~~~~~~~----~~~~~~~----~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vI 554 (585)
++||+||++|++.+. .+...+. ..+.+||.++|++||+ ++++|++.+||+++|+++++ .+||.||
T Consensus 478 ~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~~d~~~la~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~li 550 (585)
T CHL00099 478 KIIIINNKWQGMVRQWQQAFYGERYSHSNMEEGAPDFVKLAEAYGI-----KGLRIKSRKDLKSSLKEALD--YDGPVLI 550 (585)
T ss_pred EEEEEECCcchHHHHHHHHhcCCCcccccCCCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEE
Confidence 999999999998321 1222222 1246899999999999 99999999999999999986 7899999
Q ss_pred EEEcCCCCChH
Q 007917 555 EVFVHKDDTSK 565 (585)
Q Consensus 555 eV~v~~~~~~~ 565 (585)
||++++++.+.
T Consensus 551 ev~v~~~~~~~ 561 (585)
T CHL00099 551 DCQVIEDENCY 561 (585)
T ss_pred EEEECCCcccC
Confidence 99999877643
No 30
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=100.00 E-value=3e-91 Score=770.92 Aligned_cols=512 Identities=20% Similarity=0.242 Sum_probs=421.5
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-CCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHH
Q 007917 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-PELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~-~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (585)
++++++|++.|+++||+||||+||+++.+|+++|.+. ++|++|.+|||++|+|||+||+|+||+ |||++|+|||++|+
T Consensus 3 ~~~a~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~ 82 (597)
T PRK08273 3 QTVADFILERLREWGVRRVFGYPGDGINGLLGALGRADDKPEFVQARHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIHL 82 (597)
T ss_pred ccHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHH
Confidence 7899999999999999999999999999999999753 469999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhce-eEEEEecCcchhHHHHHHHHHHhhhcC
Q 007917 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAIT-CSQAVVNNLGDAHELIDTAISTALKES 183 (585)
Q Consensus 105 ~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-k~~~~v~~~~~~~~~l~~A~~~a~~~~ 183 (585)
++||++||.+++|||+|+|+.++...+++ .+ |..||.++|+++| ||+.++.+++++++.|++|++.|.+++
T Consensus 83 ~~gi~~A~~d~vPvl~I~G~~~~~~~~~~-----~~---q~~d~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~~~ 154 (597)
T PRK08273 83 LNGLYDAKLDHVPVVAIVGQQARAALGGH-----YQ---QEVDLQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALAER 154 (597)
T ss_pred HHHHHHHHhcCCCEEEEecCCchhhcCCC-----CC---CccCHHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999998866654 22 2357889999999 999999999999999999999999988
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCC----CccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHH
Q 007917 184 KPVYISISCNLPGIPHPTFARDPV----PFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELA 259 (585)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~la 259 (585)
|||||+||.|++..+ ...+... ............++++.+++++++|.+||||+|++|.|+. ++.+++.+||
T Consensus 155 gPV~i~iP~Dv~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvi~~G~g~~--~a~~~l~~la 230 (597)
T PRK08273 155 TVTAVILPNDVQELE--YEPPPHAHGTVHSGVGYTRPRVVPYDEDLRRAAEVLNAGRKVAILVGAGAL--GATDEVIAVA 230 (597)
T ss_pred CCEEEEeCcchhhCc--ccCccccccccccccCCCCCCCCCCHHHHHHHHHHHhcCCCEEEEECcchH--hHHHHHHHHH
Confidence 999999999997632 2111100 0000000011123466799999999999999999999996 6899999999
Q ss_pred HHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCcee
Q 007917 260 DATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVT 339 (585)
Q Consensus 260 e~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~ 339 (585)
|++++||++|++|||.||++||+++|++ |..+++.+++++++||+||+||++++... +....++.++||||.|+.+
T Consensus 231 e~~~~PV~tt~~gkg~~~e~hp~~~G~~-G~~g~~~a~~~~~~aDlvl~lG~~~~~~~---~~~~~~~~~~i~Id~d~~~ 306 (597)
T PRK08273 231 ERLGAGVAKALLGKAALPDDLPWVTGSI-GLLGTKPSYELMRECDTLLMVGSSFPYSE---FLPKEGQARGVQIDIDGRM 306 (597)
T ss_pred HHhCCceeecccCcccCCCCCccceecC-CCCccHHHHHHHHhCCEEEEeCCCCCHHh---cCCCCCCCeEEEEeCCHHH
Confidence 9999999999999999999999999996 88899999999999999999999875321 1111234589999999988
Q ss_pred ecCCCccc----cccHHHHHHHHHHHhccCcc-ch-hh---hhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEE
Q 007917 340 VGNGPSLG----WVFMADFLSALAKKLRKNTT-AL-EN---YRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAV 410 (585)
Q Consensus 340 ~~~~~~~~----~~~~~~~l~~L~~~l~~~~~-~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii 410 (585)
++ +.+.. ..|++.+|++|.+.+..... .| .. +++.+.............++++.++++.|++.+++++++
T Consensus 307 ~~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l~~~~iv 385 (597)
T PRK08273 307 LG-LRYPMEVNLVGDAAETLRALLPLLERKKDRSWRERIEKWVARWWETLEARAMVPADPVNPQRVFWELSPRLPDNAIL 385 (597)
T ss_pred cC-CCCCCCceEecCHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhHhhhhhhhcCCCCCcCHHHHHHHHHhhCCCCeEE
Confidence 86 32222 24899999999887764321 11 11 111110000000112234799999999999999999999
Q ss_pred EecCCccccc-cccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH-----hHHHHHHh-----C
Q 007917 411 IAETGDSWFN-CQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ-----EISTMIRC-----G 479 (585)
Q Consensus 411 ~~d~G~~~~~-~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~-----eL~ta~~~-----~ 479 (585)
+.|+|++..| ..+++.+++.+++.+.++|+|||++|+|||+++|+|+++||+|+|||||+ ||+|++|| +
T Consensus 386 v~d~G~~~~~~~~~~~~~~~~~~~~s~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~~EL~Ta~r~~~~~~~ 465 (597)
T PRK08273 386 TADSGSCANWYARDLRMRRGMMASLSGTLATMGPAVPYAIAAKFAHPDRPVIALVGDGAMQMNGMAELITVAKYWRQWSD 465 (597)
T ss_pred EECCcHHHHHHHHhCCCCCCCeEEecCccccccchHHHHHHHHHhCCCCcEEEEEcchhHhccchHHHHHHHHHhhcccC
Confidence 9999998755 45566666677999999999999999999999999999999999999995 99999999 8
Q ss_pred CCeEEEEEeCCceeeee----eecCC----CCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCe
Q 007917 480 QRSIIFLINNGGYTIEV----EIHDG----PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSL 551 (585)
Q Consensus 480 lpv~ivV~NN~~~~~~~----~~~~~----~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp 551 (585)
+|+++||+||++|++.+ ..+++ .+.+++++||.++|++||+ ++++|++.+||+++|+++++ .++|
T Consensus 466 lpviivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~eL~~al~~a~~--~~~p 538 (597)
T PRK08273 466 PRLIVLVLNNRDLNQVTWEQRVMEGDPKFEASQDLPDVPYARFAELLGL-----KGIRVDDPEQLGAAWDEALA--ADRP 538 (597)
T ss_pred CCEEEEEEeCCcchHHHHHHHHhcCCCcccccccCCCCCHHHHHHHCCC-----EEEEECCHHHHHHHHHHHHh--CCCC
Confidence 99999999999999821 11222 1234578999999999999 99999999999999999997 7999
Q ss_pred EEEEEEcCCCC
Q 007917 552 CFIEVFVHKDD 562 (585)
Q Consensus 552 ~vIeV~v~~~~ 562 (585)
+||||.+++++
T Consensus 539 ~lIeV~~~~~~ 549 (597)
T PRK08273 539 VVLEVKTDPNV 549 (597)
T ss_pred EEEEEEeCCCC
Confidence 99999999887
No 31
>PRK08611 pyruvate oxidase; Provisional
Probab=100.00 E-value=5.3e-91 Score=765.92 Aligned_cols=512 Identities=21% Similarity=0.320 Sum_probs=422.5
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-CCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-PELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~-~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (585)
.++++++|++.|+++||++|||+||+++.+|+++|.+. ++|++|.+|||++|+|||+||+|+||+ +||++|+|||++|
T Consensus 3 ~~~~~~~l~~~L~~~GV~~vFgipG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N 82 (576)
T PRK08611 3 KIKAGEALVKLLQDWGIDHVYGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIH 82 (576)
T ss_pred CCcHHHHHHHHHHHcCCCEEEecCCcchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCcHHH
Confidence 47899999999999999999999999999999999653 579999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcC
Q 007917 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKES 183 (585)
Q Consensus 104 ~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~ 183 (585)
+++||++||.+++|||+|+|+.++...+++. + |..||.++|+++|||++++.+++++++.+++|++.|.+++
T Consensus 83 ~l~gla~A~~~~~Pvl~ItG~~~~~~~~~~~-----~---q~~d~~~l~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~ 154 (576)
T PRK08611 83 LLNGLYDAKMDHVPVLALAGQVTSDLLGTDF-----F---QEVNLEKMFEDVAVYNHQIMSAENLPEIVNQAIRTAYEKK 154 (576)
T ss_pred HHHHHHHHhhcCCCEEEEecCCcccccCCCC-----c---cccCHHHHhhcccceeEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999988666542 2 3458899999999999999999999999999999999988
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhC
Q 007917 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (585)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~ 263 (585)
|||||+||.|++..+.+.....+.+. ..+ ....++++.+++++++|.+||||+|++|+|++ ++.+++.+|||+++
T Consensus 155 GPV~l~iP~Dv~~~~~~~~~~~~~~~-~~~--~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~--~a~~~l~~lae~~~ 229 (576)
T PRK08611 155 GVAVLTIPDDLPAQKIKDTTNKTVDT-FRP--TVPSPKPKDIKKAAKLINKAKKPVILAGLGAK--HAKEELLAFAEKAK 229 (576)
T ss_pred CCEEEEeChhhhhccccccccccccc-CCC--CCCCCCHHHHHHHHHHHHcCCCcEEEECcCcc--hHHHHHHHHHHHhC
Confidence 99999999999764221100000111 000 11123456789999999999999999999997 47899999999999
Q ss_pred CCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecCC
Q 007917 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (585)
Q Consensus 264 ~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~~ 343 (585)
+||++|++|||+||++||+++|.+ |..+++.++++++++|+||+||++++... | +.++.++||||.|+.+++ .
T Consensus 230 ~PV~tt~~gkg~~~~~hp~~~G~~-g~~~~~~a~~~l~~aDlvl~iG~~~~~~~---~--~~~~~~~i~id~d~~~i~-~ 302 (576)
T PRK08611 230 IPIIHTLPAKGIIPDDHPYSLGNL-GKIGTKPAYEAMQEADLLIMVGTNYPYVD---Y--LPKKAKAIQIDTDPANIG-K 302 (576)
T ss_pred CCEEEccccccccCCCCccccccC-CCCCcHHHHHHHHhCCEEEEeCCCCCccc---c--CCCCCcEEEEeCCHHHcC-C
Confidence 999999999999999999999986 77788888899999999999999875321 1 223468999999999887 3
Q ss_pred Ccccc----ccHHHHHHHHHHHhccCcc-ch-hhh---hhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEecC
Q 007917 344 PSLGW----VFMADFLSALAKKLRKNTT-AL-ENY---RRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAET 414 (585)
Q Consensus 344 ~~~~~----~~~~~~l~~L~~~l~~~~~-~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d~ 414 (585)
.+..+ .|++.+|+.|.+.+..... .| +.+ ++.............+.++++.++++.|++.+|++++++.|+
T Consensus 303 ~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~l~~~l~~~~ivv~d~ 382 (576)
T PRK08611 303 RYPVNVGLVGDAKKALHQLTENIKHVEDRRFLEACQENMAKWWKWMEEDENNASTPIKPERVMAAIQKIADDDAVLSVDV 382 (576)
T ss_pred ccCCCeeEecCHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHhhhcCCCeEEEEcC
Confidence 33222 4889999999988754321 11 111 111000000001122346999999999999999999999999
Q ss_pred Ccccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeC
Q 007917 415 GDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINN 489 (585)
Q Consensus 415 G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN 489 (585)
|++..|. .++..+++.+|+.+.++|+|||++|+|||++++.|+++||+++|||||+ ||+|++||++|+++||+||
T Consensus 383 G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~Vv~i~GDGsf~m~~~eL~Ta~r~~l~~iivV~NN 462 (576)
T PRK08611 383 GTVTVWSARYLNLGTNQKFIISSWLGTMGCGLPGAIAAKIAFPDRQAIAICGDGGFSMVMQDFVTAVKYKLPIVVVVLNN 462 (576)
T ss_pred hHHHHHHHhcCCcCCCCeEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcccHHhhhHHHHHHHHHhCCCeEEEEEeC
Confidence 9987664 4566666667898899999999999999999999999999999999999 9999999999999999999
Q ss_pred Cceeeeee---ecC-C-CCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCCh
Q 007917 490 GGYTIEVE---IHD-G-PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTS 564 (585)
Q Consensus 490 ~~~~~~~~---~~~-~-~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~~ 564 (585)
++|++.+. ... . .+.++.++||.++|++||+ ++++|++++||+++|+++++ .++|+||||.+++.+.+
T Consensus 463 ~~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~eL~~al~~a~~--~~~p~lIeV~vd~~~~~ 535 (576)
T PRK08611 463 QQLAFIKYEQQAAGELEYAIDLSDMDYAKFAEACGG-----KGYRVEKAEELDPAFEEALA--QDKPVIIDVYVDPNAAP 535 (576)
T ss_pred CcchHHHHHHHHhcCCcccccCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEeCCcccC
Confidence 99998321 111 1 2345678999999999999 99999999999999999996 78999999999988755
No 32
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=4.7e-91 Score=763.50 Aligned_cols=514 Identities=19% Similarity=0.267 Sum_probs=419.5
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHH
Q 007917 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (585)
++++++|++.|+++||++|||+||+++.+|++++.+. +|++|.+|||++|+|||+||||+||+ +||++|+|||++|++
T Consensus 2 ~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~-~i~~v~~~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l 80 (549)
T PRK06457 2 PSVAEVIIRVLEDNGIQRIYGIPGDSIDPLVDAIRKS-KVKYVQVRHEEGAALAASVEAKITGKPSACMGTSGPGSIHLL 80 (549)
T ss_pred CcHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHHhc-CCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhH
Confidence 6899999999999999999999999999999999764 69999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCCc
Q 007917 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKP 185 (585)
Q Consensus 106 ~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gP 185 (585)
+||++|+.+++|||+|+|+.+....+++ .+ |..||.++|+++|||+.++++++++++.+++||+.|++++||
T Consensus 81 ~~l~~A~~~~~Pvl~i~G~~~~~~~~~~-----~~---q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~GP 152 (549)
T PRK06457 81 NGLYDAKMDHAPVIALTGQVESDMIGHD-----YF---QEVNLTKLFDDVAVFNQILINPENAEYIIRRAIREAISKRGV 152 (549)
T ss_pred HHHHHHHhcCCCEEEEecCCCccccCCC-----cc---cccchhhhhccceeEEEEeCCHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999988755543 23 346899999999999999999999999999999999998899
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCC
Q 007917 186 VYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (585)
Q Consensus 186 V~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~P 265 (585)
|||+||.|++..+ .+... ......+ . +.....+++++++|++||||+|++|.|++ ++.+++++|||++++|
T Consensus 153 V~l~iP~Dv~~~~--~~~~~-~~~~~~~--~--~~~~~~i~~~~~~L~~AkrPvii~G~g~~--~a~~~l~~lAe~~~~P 223 (549)
T PRK06457 153 AHINLPVDILRKS--SEYKG-SKNTEVG--K--VKYSIDFSRAKELIKESEKPVLLIGGGTR--GLGKEINRFAEKIGAP 223 (549)
T ss_pred EEEEeCHhHhhcc--ccccc-ccccCCC--C--CCCHHHHHHHHHHHHcCCCcEEEECcchh--hHHHHHHHHHHHHCCC
Confidence 9999999997632 21111 1100001 1 11124688999999999999999999997 4779999999999999
Q ss_pred eEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecCCCc
Q 007917 266 IAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPS 345 (585)
Q Consensus 266 v~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~~~~ 345 (585)
|++|++|||.||++||+++|.+ |..+++.+++++++||+||+||++++... | +.++.++||||.|+.+++ +.+
T Consensus 224 V~tt~~gkg~~~~~hp~~~G~~-g~~~~~~~~~~l~~aDlvl~lG~~~~~~~---~--~~~~~~ii~id~d~~~~~-~~~ 296 (549)
T PRK06457 224 IIYTLNGKGILPDLDPKVMGGI-GLLGTKPSIEAMDKADLLIMLGTSFPYVN---F--LNKSAKVIQVDIDNSNIG-KRL 296 (549)
T ss_pred EEEcccccccCCCCChhhccCC-CCCCCHHHHHHHHhCCEEEEECCCCChhh---c--CCCCCcEEEEeCCHHHhC-CCC
Confidence 9999999999999999999996 77888889999999999999999886432 1 223568999999999887 333
Q ss_pred ccc----ccHHHHHHHHHHHhccCc-c----chhhhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEecCCc
Q 007917 346 LGW----VFMADFLSALAKKLRKNT-T----ALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGD 416 (585)
Q Consensus 346 ~~~----~~~~~~l~~L~~~l~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d~G~ 416 (585)
..+ .|++.+|+.+........ . ....|.+.... . ......++++.+++++|++.+|++++++.|+|+
T Consensus 297 ~~~~~i~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~g~ 372 (549)
T PRK06457 297 DVDLSYPIPVAEFLNIDIEEKSDKFYEELKGKKEDWLDSISK-Q---ENSLDKPMKPQRVAYIVSQKCKKDAVIVTDTGN 372 (549)
T ss_pred CCCeEEecCHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH-h---hcCCCCCcCHHHHHHHHHhhCCCCeEEEECCcH
Confidence 333 488899964432211000 0 01122211000 0 011234799999999999999999999999999
Q ss_pred ccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcC-CCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCC
Q 007917 417 SWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAK-DKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNG 490 (585)
Q Consensus 417 ~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p-~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~ 490 (585)
+..|. .++..+++.+++++.++|+|||++|+|||+++|+| +|+||+++|||||+ ||+|+++|++|+++||+||+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la~p~~~~Vv~i~GDGsf~~~~~eL~Ta~~~~lpi~ivV~NN~ 452 (549)
T PRK06457 373 VTMWTARHFRASGEQTFIFSAWLGSMGIGVPGSVGASFAVENKRQVISFVGDGGFTMTMMELITAKKYDLPVKIIIYNNS 452 (549)
T ss_pred HHHHHHHhCCCCCCCeEEeCCCcchhhhhHHHHHHHHhcCCCCCeEEEEEcccHHhhhHHHHHHHHHHCCCeEEEEEECC
Confidence 87664 34555556668999999999999999999999998 99999999999999 99999999999999999999
Q ss_pred ceeeeee---ec--CCCCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChH
Q 007917 491 GYTIEVE---IH--DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSK 565 (585)
Q Consensus 491 ~~~~~~~---~~--~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~~~ 565 (585)
+|++.+. .+ .....+++++||.++|++||+ ++++|++++||+++|+++++ .++|+||||.+++++.+.
T Consensus 453 ~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~lIeV~i~~~~~~~ 525 (549)
T PRK06457 453 KLGMIKFEQEVMGYPEWGVDLYNPDFTKIAESIGF-----KGFRLEEPKEAEEIIEEFLN--TKGPAVLDAIVDPNERPM 525 (549)
T ss_pred ccchHHHHHHHhcCCcccccCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEeCccccCC
Confidence 9998321 11 122345678999999999999 99999999999999999996 789999999999888664
Q ss_pred HHHHHHHhhhh
Q 007917 566 ELLEWGSRVSA 576 (585)
Q Consensus 566 ~~~~~~~~~~~ 576 (585)
+.+.++...+.
T Consensus 526 ~~~~~~~~~~~ 536 (549)
T PRK06457 526 PPKLTFKQAGE 536 (549)
T ss_pred CCeechhhhhh
Confidence 43444444433
No 33
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-90 Score=764.07 Aligned_cols=512 Identities=19% Similarity=0.233 Sum_probs=423.1
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (585)
.++++++|++.|+++||++|||+||+++.+|+++|.+.++|++|.+|||++|+|||+||||+||+ +||++|+|||.+|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~ 81 (574)
T PRK09124 2 KQTVADYIAKTLEQAGVKRIWGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHL 81 (574)
T ss_pred CccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCcEEEeCcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHHH
Confidence 47899999999999999999999999999999999765689999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCC
Q 007917 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (585)
Q Consensus 105 ~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~g 184 (585)
++||++|+.+++|||+|+|+.+....+++. + |..||.++|+++|||+.++.+++++++.+++|++.|.+++|
T Consensus 82 ~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~-----~---Q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~~g 153 (574)
T PRK09124 82 INGLFDCHRNHVPVLAIAAHIPSSEIGSGY-----F---QETHPQELFRECSHYCELVSNPEQLPRVLAIAMRKAILNRG 153 (574)
T ss_pred HHHHHHHhhcCCCEEEEecCCccccCCCCC-----c---cccChhhhcccceeeeEEeCCHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999988766642 2 34688999999999999999999999999999999998889
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCC
Q 007917 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (585)
Q Consensus 185 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~ 264 (585)
||||+||.|++..+.+.. ............. .+++..+++++++|.+||||+||+|+|+. ++.+++.+|||++++
T Consensus 154 PV~l~iP~Dv~~~~~~~~-~~~~~~~~~~~~~--~~~~~~i~~~~~~L~~AkrPvii~G~g~~--~a~~~l~~lae~l~~ 228 (574)
T PRK09124 154 VAVVVLPGDVALKPAPER-ATPHWYHAPQPVV--TPAEEELRKLAALLNGSSNITLLCGSGCA--GAHDELVALAETLKA 228 (574)
T ss_pred CEEEEeChhhhhCccccc-cccccccCCCCCC--CCCHHHHHHHHHHHHcCCCCEEEECcChH--hHHHHHHHHHHHhCC
Confidence 999999999976432211 1000000000001 12356789999999999999999999984 588999999999999
Q ss_pred CeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecCCC
Q 007917 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (585)
Q Consensus 265 Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~~~ 344 (585)
||++|++|||+||++||+++|.+ |..+++..++++++||+||+||++++... | +.++.++||||.|+.+++ +.
T Consensus 229 PV~tt~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~~~~aDlvl~lG~~~~~~~---~--~~~~~~ii~id~d~~~~~-~~ 301 (574)
T PRK09124 229 PIVHALRGKEHVEYDNPYDVGMT-GLIGFSSGYHAMMNCDTLLMLGTDFPYRQ---F--YPTDAKIIQIDINPGSLG-RR 301 (574)
T ss_pred ceEEcccccccCCCCCcccccCC-ccCCCHHHHHHHHhCCEEEEECCCCCccc---c--cCCCCcEEEeeCCHHHhC-CC
Confidence 99999999999999999999985 77888888899999999999999875321 1 233468999999999887 33
Q ss_pred cccc----ccHHHHHHHHHHHhccCcc--chhhhhh---ccCCC--CCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEec
Q 007917 345 SLGW----VFMADFLSALAKKLRKNTT--ALENYRR---IYVPP--GIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAE 413 (585)
Q Consensus 345 ~~~~----~~~~~~l~~L~~~l~~~~~--~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d 413 (585)
+..+ .|++.+|++|.+.+..+.. +.+.+.+ ..... ..........++++..+++.|++.++++++++.|
T Consensus 302 ~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ivv~d 381 (574)
T PRK09124 302 SPVDLGLVGDVKATLAALLPLLEEKTDRKFLDKALEHYRKARKGLDDLAVPSDGGKPIHPQYLARQISEFAADDAIFTCD 381 (574)
T ss_pred CCCCeEEEccHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHhhhhhhcccCCCCcCCHHHHHHHHHhhcCCCcEEEEc
Confidence 3322 4799999999887753221 1111110 00000 0000111234699999999999999999999999
Q ss_pred CCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEe
Q 007917 414 TGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLIN 488 (585)
Q Consensus 414 ~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~N 488 (585)
+|++.+|. .++..+++.+|+.+.++|+|||++|+|||+++|.|+++||+++|||||+ ||+|++||++|+++||+|
T Consensus 382 ~g~~~~~~~~~~~~~~~~~~~~~~~~G~mG~~lpaAiGa~la~p~r~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~N 461 (574)
T PRK09124 382 VGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQAAHPGRQVVALSGDGGFSMLMGDFLSLVQLKLPVKIVVFN 461 (574)
T ss_pred CCHHHHHHHHhcccCCCCeEEecCCcccccchHHHHHHHHHhCCCCeEEEEecCcHHhccHHHHHHHHHhCCCeEEEEEe
Confidence 99988764 3455666677999999999999999999999999999999999999998 999999999999999999
Q ss_pred CCceeeeee---ecC--CCCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCC
Q 007917 489 NGGYTIEVE---IHD--GPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDT 563 (585)
Q Consensus 489 N~~~~~~~~---~~~--~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~ 563 (585)
|++|++.+. ... ..+++++++||.++|++||+ ++++|++++||+++|+++++ .++|+||||.+++++.
T Consensus 462 N~~~g~i~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~eL~~al~~a~~--~~~p~lIev~i~~~~~ 534 (574)
T PRK09124 462 NSVLGFVAMEMKAGGYLTDGTDLHNPDFAAIAEACGI-----TGIRVEKASELDGALQRAFA--HDGPALVDVVTAKQEL 534 (574)
T ss_pred CCccccHHHHHHhcCCccccCcCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEecCccc
Confidence 999998321 111 13356678999999999999 99999999999999999986 7899999999998775
Q ss_pred h
Q 007917 564 S 564 (585)
Q Consensus 564 ~ 564 (585)
+
T Consensus 535 ~ 535 (574)
T PRK09124 535 A 535 (574)
T ss_pred C
Confidence 4
No 34
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=100.00 E-value=9.1e-91 Score=763.92 Aligned_cols=521 Identities=22% Similarity=0.287 Sum_probs=431.2
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHH
Q 007917 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (585)
|+++++|++.|+++||+||||+||+++.+|+++|.++++|++|.||||++|+|||+||+|+||+ +||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~~l~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l 80 (558)
T TIGR00118 1 MSGAEAIIESLKDEGVKTVFGYPGGAILPIYDALYNDSGIEHILVRHEQGAAHAADGYARASGKVGVVLVTSGPGATNLV 80 (558)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHH
Confidence 5789999999999999999999999999999999766789999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-CC
Q 007917 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (585)
Q Consensus 106 ~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~g 184 (585)
+||++|+.+++|||+|+|++++...+++ . .|..||..+++++|||+.++.+++++++.|++|++.|.++ +|
T Consensus 81 ~~i~~A~~~~~Pvl~i~g~~~~~~~~~~-----~---~q~~d~~~~~~~~tk~~~~v~~~~~~~~~v~~A~~~A~~~~~G 152 (558)
T TIGR00118 81 TGIATAYMDSIPMVVFTGQVPTSLIGSD-----A---FQEADILGITMPITKHSFQVKSAEDIPRIIKEAFHIATTGRPG 152 (558)
T ss_pred HHHHHHHhcCCCEEEEecCCCccccCCC-----C---CcccChhhhhcCccceeEEeCCHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999998766554 2 2345889999999999999999999999999999999997 69
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCC
Q 007917 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (585)
Q Consensus 185 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~ 264 (585)
||||+||.|++.. +.....+.............+.+..+++++++|.+||||+|++|+|++++++.++|.+|+|++++
T Consensus 153 PV~i~iP~dv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~ 230 (558)
T TIGR00118 153 PVLVDLPKDVTTA--EIEYPYPEKVNLPGYRPTVKGHPLQIKKAAELINLAKKPVILVGGGVIIAGASEELKELAERIQI 230 (558)
T ss_pred eEEEEcChhhhhh--hccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCccccchHHHHHHHHHHhCC
Confidence 9999999999763 22111110100000001001234568999999999999999999999988999999999999999
Q ss_pred CeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecCCC
Q 007917 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (585)
Q Consensus 265 Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~~~ 344 (585)
||++|++|||.||++||+++|.+ |..+++.+++++++||+||+||+++++..+..|..+.++.++||||.|+..++ ..
T Consensus 231 pv~tt~~~kg~~~e~hp~~~G~~-g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~ 308 (558)
T TIGR00118 231 PVTTTLMGLGSFPEDHPLSLGML-GMHGTKTANLAVHECDLIIAVGARFDDRVTGNLAKFAPNAKIIHIDIDPAEIG-KN 308 (558)
T ss_pred CEEEccccCCCCCCCCccccCCC-CCCCCHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCcEEEEeCCHHHhC-Cc
Confidence 99999999999999999999996 77888889999999999999999999887766665556678999999998876 33
Q ss_pred ccc----cccHHHHHHHHHHHhccCc----cchhhh-hhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEecCC
Q 007917 345 SLG----WVFMADFLSALAKKLRKNT----TALENY-RRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETG 415 (585)
Q Consensus 345 ~~~----~~~~~~~l~~L~~~l~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d~G 415 (585)
+.. ..|++.+|++|.+.+.... ..|.+. +....... ......+.++++.++++.|++.+|++++++.|+|
T Consensus 309 ~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g 387 (558)
T TIGR00118 309 VRVDIPIVGDARNVLEELLKKLFELKERKESAWLEQINKWKKEYP-LKMDYTEEGIKPQQVIEELSRVTKDEAIVTTDVG 387 (558)
T ss_pred CCCCeEEecCHHHHHHHHHHhhhhccccCcHHHHHHHHHHHHhCh-hhccCCCCCcCHHHHHHHHHhhCCCCeEEEeCCc
Confidence 322 2488999999998774321 112111 11110000 0001123469999999999999999999999999
Q ss_pred cccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCC
Q 007917 416 DSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNG 490 (585)
Q Consensus 416 ~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~ 490 (585)
++..|. .++..+++.+|+.++++|+|||++|+|||+++|.|+++||+++|||||+ ||+|++++++|+++||+||+
T Consensus 388 ~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~l~aaiGa~la~~~~~vv~~~GDG~f~~~~~eL~ta~~~~l~~~~vv~NN~ 467 (558)
T TIGR00118 388 QHQMWAAQFYPFRKPRRFITSGGLGTMGFGLPAAIGAKVAKPESTVICITGDGSFQMNLQELSTAVQYDIPVKILILNNR 467 (558)
T ss_pred HHHHHHHHhcccCCCCeEEeCCccccccchhhHHHhhhhhCCCCcEEEEEcchHHhccHHHHHHHHHhCCCeEEEEEeCC
Confidence 886554 4556666667999999999999999999999999999999999999999 99999999999999999999
Q ss_pred ceeeeee----ecCCCC--CCC-CCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCC
Q 007917 491 GYTIEVE----IHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDT 563 (585)
Q Consensus 491 ~~~~~~~----~~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~ 563 (585)
+|++... .+.+.+ ..+ +++||.++|++||+ ++++|++.+||+++|+++++ .++|+||||++++++.
T Consensus 468 ~~~~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~l~~al~~a~~--~~~p~liev~~~~~~~ 540 (558)
T TIGR00118 468 YLGMVRQWQELFYEERYSHTHMGSLPDFVKLAEAYGI-----KGIRIEKPEELDEKLKEALS--SNEPVLLDVVVDKPEN 540 (558)
T ss_pred chHHHHHHHHHhcCCceeeccCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCEEEEEEeCCccc
Confidence 9997321 122222 122 46899999999999 99999999999999999996 7899999999998776
Q ss_pred hHHH
Q 007917 564 SKEL 567 (585)
Q Consensus 564 ~~~~ 567 (585)
+..+
T Consensus 541 ~~~~ 544 (558)
T TIGR00118 541 VLPM 544 (558)
T ss_pred cccc
Confidence 5433
No 35
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=1.2e-90 Score=765.38 Aligned_cols=523 Identities=21% Similarity=0.260 Sum_probs=428.6
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHH
Q 007917 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (585)
++++++|++.|+++||++|||+||+++++|+++|.++++|++|.|+||++|+|||+||+|+||+ +||++|+|||++|++
T Consensus 4 ~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l 83 (574)
T PRK06882 4 LSGAEMVVQSLRDEGVEYVFGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAI 83 (574)
T ss_pred ccHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhhcCCCeEEEeccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHHH
Confidence 7899999999999999999999999999999999764579999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-CC
Q 007917 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (585)
Q Consensus 106 ~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~g 184 (585)
+||++|+.+++|||+|+|+++....+++ . .|..||..+|+++|||+.++.+++++++.+++|++.|.++ +|
T Consensus 84 ~~i~~A~~~~~Pvlvi~G~~~~~~~~~~-----~---~q~~d~~~l~~~vtk~s~~v~~~~~~~~~l~~A~~~A~~~~~G 155 (574)
T PRK06882 84 TGIATAYTDSVPLVILSGQVPSNLIGTD-----A---FQECDMLGISRPVVKHSFIVKNAEDIPSTIKKAFYIASTGRPG 155 (574)
T ss_pred HHHHHHhhcCCCEEEEecCCCccccCCC-----c---ccccchhhhhhcccceEEEeCCHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999998866553 2 2346889999999999999999999999999999999986 69
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCC
Q 007917 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (585)
Q Consensus 185 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~ 264 (585)
||||+||.|++....+.....+......+......+.+..+++++++|.+||||+|++|.|+.++++.++|.+|+|++++
T Consensus 156 PV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~ 235 (574)
T PRK06882 156 PVVIDIPKDMVNPANKFTYEYPEEVSLRSYNPTVQGHKGQIKKALKALLVAKKPVLFVGGGVITAECSEQLTQFAQKLNL 235 (574)
T ss_pred CEEEecCHHHhhhhcccccccCcccccccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccchHHHHHHHHHHhCC
Confidence 99999999997532110000000000000000001235678999999999999999999999988899999999999999
Q ss_pred CeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecCCC
Q 007917 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (585)
Q Consensus 265 Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~~~ 344 (585)
||++|++|||+||++||+++|++ |..+++.+++++++||+||+||+++++..+..|..+.++.++||||.|+..++ +.
T Consensus 236 pv~tt~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~-~~ 313 (574)
T PRK06882 236 PVTSSLMGLGAYPSTDKQFLGML-GMHGTYEANNAMHESDLILGIGVRFDDRTTNNLAKYCPNAKVIHIDIDPTSIS-KN 313 (574)
T ss_pred CEEEcCccCcCCCCCChhhcCCC-cccccHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhc-Cc
Confidence 99999999999999999999986 88888899999999999999999999888766655556678999999998886 33
Q ss_pred ccc----cccHHHHHHHHHHHhccCc-----cchhhhh----hccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEE
Q 007917 345 SLG----WVFMADFLSALAKKLRKNT-----TALENYR----RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVI 411 (585)
Q Consensus 345 ~~~----~~~~~~~l~~L~~~l~~~~-----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~ 411 (585)
+.. ..|++.+|++|.+.+.... ..+..|. +..... .........++++..+++.|++.++++.+++
T Consensus 314 ~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~~~l~~~~ii~ 392 (574)
T PRK06882 314 VPAYIPIVGSAKNVLEEFLSLLEEENLAKSQTDLTAWWQQINEWKAKK-CLEFDRTSDVIKPQQVVEAIYRLTNGDAYVA 392 (574)
T ss_pred cCCceEEecCHHHHHHHHHHHhhhhcccccccccHHHHHHHHHHHHhC-hhhhccCCCCcCHHHHHHHHHhhcCCCeEEE
Confidence 222 2489999999988774321 0111121 111000 0000111236999999999999999999999
Q ss_pred ecCCccccc-cccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEE
Q 007917 412 AETGDSWFN-CQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFL 486 (585)
Q Consensus 412 ~d~G~~~~~-~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV 486 (585)
.|+|++..| ..++..+.+.+|+.++++|+|||++|+|||+++|.|+++||+++|||||+ ||+|+++|++|+++||
T Consensus 393 ~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~lpv~~vV 472 (574)
T PRK06882 393 SDVGQHQMFAALHYPFDKPRRWINSGGAGTMGFGLPAAIGVKFAHPEATVVCVTGDGSIQMNIQELSTAKQYDIPVVIVS 472 (574)
T ss_pred ecCchhHHHHHHhccccCCCcEEeCCCcccccchhHHHHHHHhhcCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEEE
Confidence 999998655 44566666666998899999999999999999999999999999999999 9999999999999999
Q ss_pred EeCCceeeeee----ecCCCC--CCC-CCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcC
Q 007917 487 INNGGYTIEVE----IHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVH 559 (585)
Q Consensus 487 ~NN~~~~~~~~----~~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~ 559 (585)
+||++|++.+. .+++.+ ..+ ..+||.++|++||+ ++++|++.+||+++|+++++ ..++|+||||.++
T Consensus 473 ~NN~~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~la~a~G~-----~~~~v~~~~eL~~al~~a~~-~~~~p~liev~i~ 546 (574)
T PRK06882 473 LNNRFLGMVKQWQDLIYSGRHSQVYMNSLPDFAKLAEAYGH-----VGIQIDTPDELEEKLTQAFS-IKDKLVFVDVNVD 546 (574)
T ss_pred EECchhHHHHHHHHHhcCCcccccCCCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh-cCCCcEEEEEEec
Confidence 99999997321 122222 122 35899999999999 99999999999999999985 2378999999999
Q ss_pred CCCChHH
Q 007917 560 KDDTSKE 566 (585)
Q Consensus 560 ~~~~~~~ 566 (585)
+++.+.+
T Consensus 547 ~~~~~~~ 553 (574)
T PRK06882 547 ETEHVYP 553 (574)
T ss_pred CccccCC
Confidence 8876543
No 36
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=100.00 E-value=9.9e-91 Score=762.85 Aligned_cols=515 Identities=21% Similarity=0.288 Sum_probs=425.3
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHH
Q 007917 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (585)
Q Consensus 25 ~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (585)
..++++++|++.|+++||++|||+||+++.+|+++|.++++|++|.||||++|+|||+||||+||+ +||++|+|||++|
T Consensus 6 ~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N 85 (557)
T PRK08199 6 RARTGGQILVDALRANGVERVFCVPGESYLAVLDALHDETDIRVIVCRQEGGAAMMAEAYGKLTGRPGICFVTRGPGATN 85 (557)
T ss_pred ccCcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHhhccCCCcEEEeccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHH
Confidence 357899999999999999999999999999999999876679999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-
Q 007917 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (585)
Q Consensus 104 ~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (585)
+++||++||.+++|||+|+|+.+....+++. + |..||..+|+++|||+.++.+++++++.+++|++.|.++
T Consensus 86 ~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~-----~---q~~d~~~l~~~~tk~~~~v~~~~~~~~~~~~A~~~A~~~~ 157 (557)
T PRK08199 86 ASIGVHTAFQDSTPMILFVGQVARDFREREA-----F---QEIDYRRMFGPMAKWVAEIDDAARIPELVSRAFHVATSGR 157 (557)
T ss_pred HHHHHHHHhhcCCCEEEEecCCccccCCCCc-----c---cccCHHHhhhhhhceeeecCCHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999988666642 2 346899999999999999999999999999999999997
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHh
Q 007917 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (585)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l 262 (585)
+|||||+||.|++.. +........ ..+. ...++++.+++++++|.+||||+|++|+|+.++++.++|.+|||++
T Consensus 158 ~GPV~l~iP~dl~~~--~~~~~~~~~--~~~~--~~~~~~~~i~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~ 231 (557)
T PRK08199 158 PGPVVLALPEDVLSE--TAEVPDAPP--YRRV--AAAPGAADLARLAELLARAERPLVILGGSGWTEAAVADLRAFAERW 231 (557)
T ss_pred CCcEEEEcCHhHhhC--cccccccCC--cCCC--CCCCCHHHHHHHHHHHHhCCCCEEEECCCcCchhHHHHHHHHHHHh
Confidence 699999999999763 221111101 1111 1123456789999999999999999999999888999999999999
Q ss_pred CCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccC---CCcceEEEcCCcee
Q 007917 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLI---KKEKAIIVQPHRVT 339 (585)
Q Consensus 263 ~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~---~~~~~i~id~~~~~ 339 (585)
++||++|++|||+||++||+++|.+ |..+++.+++++++||+||+||+++++..+..|..+. +..++||||.|+.+
T Consensus 232 ~~pV~tt~~~kg~~~~~hp~~~G~~-g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~~ 310 (557)
T PRK08199 232 GLPVACAFRRQDLFDNRHPNYAGDL-GLGINPALAARIREADLVLAVGTRLGEVTTQGYTLLDIPVPRQTLVHVHPDAEE 310 (557)
T ss_pred CCCEEEcCCcCCCCCCCChhhccCC-cCcCCHHHHHHHHhCCEEEEeCCCCccccccccccccccCCCCeEEEEeCCHHH
Confidence 9999999999999999999999985 7777888899999999999999999888765554332 45689999999988
Q ss_pred ecCCCcccc----ccHHHHHHHHHHHhccCccchhhhh----hccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEE
Q 007917 340 VGNGPSLGW----VFMADFLSALAKKLRKNTTALENYR----RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVI 411 (585)
Q Consensus 340 ~~~~~~~~~----~~~~~~l~~L~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~ 411 (585)
++ ..+..+ .|++.+|++|.+.+......|..+. +.+.. ... ......++++.++++.|++.++++++++
T Consensus 311 ~~-~~~~~~~~i~~D~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~l~~~l~~~~ii~ 387 (557)
T PRK08199 311 LG-RVYRPDLAIVADPAAFAAALAALEPPASPAWAEWTAAAHADYLA-WSA-PLPGPGAVQLGEVMAWLRERLPADAIIT 387 (557)
T ss_pred hC-CccCCCeEEecCHHHHHHHHHhcccccchhHHHHHHHHHHHHHh-hcc-ccCCCCCcCHHHHHHHHHHhCCCCeEEE
Confidence 86 333222 4899999999876543222222211 11100 000 1112346999999999999999999999
Q ss_pred ecCCccccccc-cccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEE
Q 007917 412 AETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFL 486 (585)
Q Consensus 412 ~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV 486 (585)
.|+|++..|.. ++...+...++. .++|+|||++|+|||+++++|+++||+++|||||+ ||+|++++++|+++||
T Consensus 388 ~d~g~~~~~~~~~~~~~~~~~~~~-~~~g~mG~glpaaiGa~la~p~~~vv~i~GDGsf~~~~~el~ta~~~~l~i~~vv 466 (557)
T PRK08199 388 NGAGNYATWLHRFFRFRRYRTQLA-PTSGSMGYGLPAAIAAKLLFPERTVVAFAGDGCFLMNGQELATAVQYGLPIIVIV 466 (557)
T ss_pred ECChHHHHHHHHhcCcCCCCeEEC-CCCccccchHHHHHHHHHhCCCCcEEEEEcchHhhccHHHHHHHHHhCCCeEEEE
Confidence 99998876543 344444444554 45799999999999999999999999999999999 9999999999999999
Q ss_pred EeCCceeeeee----ecCCC--CCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007917 487 INNGGYTIEVE----IHDGP--YNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHK 560 (585)
Q Consensus 487 ~NN~~~~~~~~----~~~~~--~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~ 560 (585)
+||++|++.+. .+.+. .+++.++||.++|++||+ ++++|++++||+++|+++++ .+||+||||++++
T Consensus 467 ~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~gp~li~v~~~~ 539 (557)
T PRK08199 467 VNNGMYGTIRMHQEREYPGRVSGTDLTNPDFAALARAYGG-----HGETVERTEDFAPAFERALA--SGKPALIEIRIDP 539 (557)
T ss_pred EeCCcchHHHHHHHHhcCCccccccCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEeCH
Confidence 99999997321 12222 245567899999999999 99999999999999999986 7899999999998
Q ss_pred CCChH
Q 007917 561 DDTSK 565 (585)
Q Consensus 561 ~~~~~ 565 (585)
++.++
T Consensus 540 ~~~~~ 544 (557)
T PRK08199 540 EAITP 544 (557)
T ss_pred HHcCC
Confidence 87653
No 37
>PRK05858 hypothetical protein; Provisional
Probab=100.00 E-value=2.4e-90 Score=756.75 Aligned_cols=512 Identities=21% Similarity=0.280 Sum_probs=419.3
Q ss_pred CCcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchH
Q 007917 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGL 102 (585)
Q Consensus 24 ~~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~ 102 (585)
+++++++++|++.|+++||++|||+||+++.+|++++.+ .+|++|.||||++|+|||+||+|+||+ +||++|+|||++
T Consensus 2 ~~~~~~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~-~~i~~i~~rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~ 80 (542)
T PRK05858 2 AQTGHAGRLAARRLKAHGVDTMFTLSGGHLFPLYDGARE-EGIRLIDVRHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVT 80 (542)
T ss_pred cccCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHHh-cCCCEEeeccHHHHHHHHHHHHHhcCCCeEEEEcCCchHH
Confidence 357899999999999999999999999999999999975 479999999999999999999999999 999999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc
Q 007917 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (585)
Q Consensus 103 n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~ 182 (585)
|+++||++|+.+++|||+|+|+.+....+++. . |..||..+|+++|||+.++++++++++.+++|++.|.++
T Consensus 81 n~~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~-----~---q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~ 152 (542)
T PRK05858 81 NGMSAMAAAQFNQSPLVVLGGRAPALRWGMGS-----L---QEIDHVPFVAPVTKFAATAQSAENAGRLVDQALQAAVTP 152 (542)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcccCCCCC-----C---cccchhhhhhhhhceEEEeCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999988666542 2 346889999999999999999999999999999999986
Q ss_pred -CCcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHH
Q 007917 183 -SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (585)
Q Consensus 183 -~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~ 261 (585)
+|||||+||.|++..+.+.. ..+.+..... ....++++.+++++++|.+||||+|++|.|++++++.+++++|||+
T Consensus 153 ~~GPV~l~iP~dv~~~~~~~~-~~~~~~~~~~--~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~ 229 (542)
T PRK05858 153 HRGPVFVDFPMDHAFSMADDD-GRPGALTELP--AGPTPDPDALARAAGLLAEAQRPVIMAGTDVWWGHAEAALLRLAEE 229 (542)
T ss_pred CCCeEEEEcChhhhhcccccc-ccccccccCC--CCCCCCHHHHHHHHHHHHhCCCcEEEECCCccccChHHHHHHHHHH
Confidence 69999999999976422111 0111110000 0112345679999999999999999999999988899999999999
Q ss_pred hCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeec
Q 007917 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (585)
Q Consensus 262 l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~ 341 (585)
+|+||++|++|||.||++||+++|. ..+++++++|+||+||+++++..+.++ +.+..++||||.|+.+++
T Consensus 230 lg~pV~tt~~~kg~~~~~hpl~~~~--------~~~~~l~~aD~vl~vG~~~~~~~~~~~--~~~~~~~i~id~d~~~~~ 299 (542)
T PRK05858 230 LGIPVLMNGMGRGVVPADHPLAFSR--------ARGKALGEADVVLVVGVPMDFRLGFGV--FGGTAQLVHVDDAPPQRA 299 (542)
T ss_pred hCCCEEEcCCcCCCCCCCCchhhhH--------HHHHHHHhCCEEEEECCCCcccccccc--cCCCCEEEEECCCHHHhc
Confidence 9999999999999999999999863 467889999999999999876544332 334468999999998886
Q ss_pred CCCccc----cccHHHHHHHHHHHhccCcc--ch-hhhhhc---cCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEE
Q 007917 342 NGPSLG----WVFMADFLSALAKKLRKNTT--AL-ENYRRI---YVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVI 411 (585)
Q Consensus 342 ~~~~~~----~~~~~~~l~~L~~~l~~~~~--~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~ 411 (585)
..+.. ..|++.++++|.+.+..... .| ..+++. ..............++++.++++.|++.+|++.+++
T Consensus 300 -~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv 378 (542)
T PRK05858 300 -HHRPVAAGLYGDLSAILSALAGAGGDRTDHQGWIEELRTAETAARARDAAELADDRDPIHPMRVYGELAPLLDRDAIVI 378 (542)
T ss_pred -CCCCCceEEeCCHHHHHHHHHHhcccccCcHHHHHHHHHHHHhhhhhhhhhccCCCCCcCHHHHHHHHHHhcCCCeEEE
Confidence 32222 24899999999887754221 11 111111 100000001123347999999999999999999999
Q ss_pred ecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEE
Q 007917 412 AETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFL 486 (585)
Q Consensus 412 ~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV 486 (585)
.|+|++..|. .++....+.+|+.+.++|+|||++|+|||+++|.|+|+||+++|||||+ ||+|++||++|+++||
T Consensus 379 ~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~la~p~r~vv~i~GDG~f~~~~~eL~Ta~~~~lpi~ivV 458 (542)
T PRK05858 379 GDGGDFVSYAGRYIDPYRPGCWLDPGPFGCLGTGPGYALAARLARPSRQVVLLQGDGAFGFSLMDVDTLVRHNLPVVSVI 458 (542)
T ss_pred ECCcHHHHHHHHHccccCCCCEEeCCCccccccchhHHHHHHHhCCCCcEEEEEcCchhcCcHHHHHHHHHcCCCEEEEE
Confidence 9999987554 4455555556888889999999999999999999999999999999998 9999999999999999
Q ss_pred EeCCceeeeee----ecCC-CCCCC-CCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007917 487 INNGGYTIEVE----IHDG-PYNVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHK 560 (585)
Q Consensus 487 ~NN~~~~~~~~----~~~~-~~~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~ 560 (585)
+||++|++.+. .+.. ...++ +++||.++|++||+ ++.+|++++||+++|+++++ .++|+||||.+++
T Consensus 459 ~NN~~y~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~eL~~al~~a~~--~~~p~lIev~~~~ 531 (542)
T PRK05858 459 GNNGIWGLEKHPMEALYGYDVAADLRPGTRYDEVVRALGG-----HGELVTVPAELGPALERAFA--SGVPYLVNVLTDP 531 (542)
T ss_pred EeCCchhhHHHHHHHhcCCccccccCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCcEEEEEEECC
Confidence 99999998321 1111 22233 67999999999999 99999999999999999997 7899999999998
Q ss_pred CCChH
Q 007917 561 DDTSK 565 (585)
Q Consensus 561 ~~~~~ 565 (585)
++.++
T Consensus 532 ~~~~~ 536 (542)
T PRK05858 532 SVAYP 536 (542)
T ss_pred CcCCC
Confidence 86543
No 38
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=2.1e-90 Score=763.29 Aligned_cols=516 Identities=22% Similarity=0.325 Sum_probs=428.1
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHH
Q 007917 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (585)
|+++++|++.|+++||++|||+||+++.+|+++|.+ .+|++|.||||++|+|||+||+|+||+ +||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~-~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l 79 (586)
T PRK06276 1 MKGAEAIIKALEAEGVKIIFGYPGGALLPFYDALYD-SDLIHILTRHEQAAAHAADGYARASGKVGVCVATSGPGATNLV 79 (586)
T ss_pred CcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHh-CCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHH
Confidence 578999999999999999999999999999999975 489999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-CC
Q 007917 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (585)
Q Consensus 106 ~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~g 184 (585)
+||++|+.+++|||+|+|+.+....+.+ .+ |..||.++|+++|||+.++++++++++.|++|++.|.++ +|
T Consensus 80 ~~i~~A~~~~~Pvl~I~G~~~~~~~~~~-----~~---q~~d~~~l~~~~tk~s~~v~~~~~i~~~i~~A~~~A~~~~~G 151 (586)
T PRK06276 80 TGIATAYADSSPVIALTGQVPTKLIGND-----AF---QEIDALGIFMPITKHNFQIKKPEEIPEIFRAAFEIAKTGRPG 151 (586)
T ss_pred HHHHHHHhcCCCEEEEeCCCCccccCCC-----CC---ccccHhhHHhhhcceEEecCCHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999998765553 22 346899999999999999999999999999999999997 69
Q ss_pred cEEEEecCCCCCCCCCCCCC-CCCCcc--CCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHH
Q 007917 185 PVYISISCNLPGIPHPTFAR-DPVPFF--LAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (585)
Q Consensus 185 PV~i~iP~dv~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~ 261 (585)
||||+||.|++.. +.... .+.+.. .........+.+..+++++++|.+||||+|++|.|++++++.+++.+|+|+
T Consensus 152 PV~l~iP~Dv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~ 229 (586)
T PRK06276 152 PVHIDLPKDVQEG--ELDLEKYPIPAKIDLPGYKPTTFGHPLQIKKAAELIAEAERPVILAGGGVIISGASEELIELSEL 229 (586)
T ss_pred cEEEEcChhHHhh--hhccccccccccccccCCCCCCCCCHHHHHHHHHHHHcCCCeEEEECCCcCcccHHHHHHHHHHH
Confidence 9999999999763 22111 011000 000000001235679999999999999999999999988999999999999
Q ss_pred hCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeec
Q 007917 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (585)
Q Consensus 262 l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~ 341 (585)
+++||++|++|||+||++||+++|.+ |..+++..++++++||+||+||+++++..+..+..+.++.++||||.|+.+++
T Consensus 230 ~~~pv~tt~~~kg~~p~~hp~~~G~~-G~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 308 (586)
T PRK06276 230 VKIPVCTTLMGKGAFPEDHPLALGMV-GMHGTKAANYSVTESDVLIAIGCRFSDRTTGDISSFAPNAKIIHIDIDPAEIG 308 (586)
T ss_pred HCCCEEEcCCCCccCCCCCcccccCC-CCCCCHHHHHHHHcCCEEEEECCCCCccccCCccccCCCCeEEEEECCHHHhC
Confidence 99999999999999999999999996 88888889999999999999999999887766655556678999999998886
Q ss_pred CCCcccc----ccHHHHHHHHHHHhccCc----cchhhh-hhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCC-----C
Q 007917 342 NGPSLGW----VFMADFLSALAKKLRKNT----TALENY-RRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSG-----D 407 (585)
Q Consensus 342 ~~~~~~~----~~~~~~l~~L~~~l~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~-----~ 407 (585)
..+..+ .|++.+|++|.+.+.... ..|.+. .+.. ....+.....+.++++..+++.|++.+++ +
T Consensus 309 -~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~~~~ 386 (586)
T PRK06276 309 -KNVRVDVPIVGDAKNVLRDLLAELMKKEIKNKSEWLERVKKLK-KESIPRMDFDDKPIKPQRVIKELMEVLREIDPSKN 386 (586)
T ss_pred -CcCCCceEEecCHHHHHHHHHHhhhhhcccchHHHHHHHHHHH-HhccccccCCCCCcCHHHHHHHHHHhccccCCCCC
Confidence 333222 489999999998775421 112111 1110 00001111123469999999999999998 9
Q ss_pred CEEEecCCccccccc-cccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCe
Q 007917 408 TAVIAETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRS 482 (585)
Q Consensus 408 ~ii~~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv 482 (585)
++++.|+|++..|.. ++..+++.+|+++.++|+|||++|+|||+++|+|+++||+++|||||+ ||+|++|+++|+
T Consensus 387 ~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGa~la~p~~~Vv~i~GDGsf~m~~~eL~Ta~~~~lpv 466 (586)
T PRK06276 387 TIITTDVGQNQMWMAHFFKTSAPRSFISSGGLGTMGFGFPAAIGAKVAKPDANVIAITGDGGFLMNSQELATIAEYDIPV 466 (586)
T ss_pred eEEEeCCcHHHHHHHHhcccCCCCeEEcCCCccccccchhHHHhhhhhcCCCcEEEEEcchHhhccHHHHHHHHHhCCCe
Confidence 999999998876643 455666667999999999999999999999999999999999999999 999999999999
Q ss_pred EEEEEeCCceeeee----eecCCCC--CCC-CCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEE
Q 007917 483 IIFLINNGGYTIEV----EIHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIE 555 (585)
Q Consensus 483 ~ivV~NN~~~~~~~----~~~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIe 555 (585)
++||+||++|++.. ..++..+ .++ +++||.++|++||+ ++++|++++||+++|+++++ .++|+|||
T Consensus 467 ~~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~lIe 539 (586)
T PRK06276 467 VICIFDNRTLGMVYQWQNLYYGKRQSEVHLGETPDFVKLAESYGV-----KADRVEKPDEIKEALKEAIK--SGEPYLLD 539 (586)
T ss_pred EEEEEeCCchHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCEEEE
Confidence 99999999999721 1122222 344 46999999999999 99999999999999999986 78999999
Q ss_pred EEcCCCCC
Q 007917 556 VFVHKDDT 563 (585)
Q Consensus 556 V~v~~~~~ 563 (585)
|.+++++.
T Consensus 540 V~i~~~~~ 547 (586)
T PRK06276 540 IIIDPAEA 547 (586)
T ss_pred EEeccccc
Confidence 99997764
No 39
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=4e-90 Score=758.45 Aligned_cols=510 Identities=18% Similarity=0.244 Sum_probs=421.7
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (585)
.++++++|++.|+++||++|||+||+++.+|+++|.++.+|++|.||||++|+|||+||+|+||+ +||++|+|||++|+
T Consensus 2 ~~t~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~ 81 (578)
T PRK06546 2 AKTVAEQLVEQLVAAGVKRIYGIVGDSLNPIVDAVRRTGGIEWVHVRHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHL 81 (578)
T ss_pred CccHHHHHHHHHHHcCCCEEEECCCCchHHHHHHHhccCCCeEEEeCcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHH
Confidence 37999999999999999999999999999999999876689999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCC
Q 007917 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (585)
Q Consensus 105 ~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~g 184 (585)
++||++|+.+++|||+|+|+.+....+++. + |..||.++|+++|||++++++++++++.+++|++.|.++||
T Consensus 82 ~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~-----~---Qe~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~G 153 (578)
T PRK06546 82 INGLYDAHRSGAPVLAIASHIPSAQIGSGF-----F---QETHPDRLFVECSGYCEMVSSAEQAPRVLHSAIQHAVAGGG 153 (578)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCccccCCCC-----c---cccChhhhcccceeeEeEeCCHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999987666542 2 34578899999999999999999999999999999998889
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCC
Q 007917 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (585)
Q Consensus 185 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~ 264 (585)
||||+||.|++.. +.+... ......+......++++.+++++++|.+||||+|++|+|++ ++.+++.+|||++++
T Consensus 154 PV~l~lP~Dv~~~--~~~~~~-~~~~~~~~~~~~~~~~~~i~~a~~~L~~A~rPvii~G~g~~--~a~~~l~~lae~~g~ 228 (578)
T PRK06546 154 VSVVTLPGDIADE--PAPEGF-APSVISPRRPTVVPDPAEVRALADAINEAKKVTLFAGAGVR--GAHAEVLALAEKIKA 228 (578)
T ss_pred CEEEEcChhhhhc--cccccc-cccccccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECcchH--HHHHHHHHHHHHhCc
Confidence 9999999999764 222111 00000010111123456799999999999999999999997 588999999999999
Q ss_pred CeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecCCC
Q 007917 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (585)
Q Consensus 265 Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~~~ 344 (585)
||++|++|||+||++||+++|+. |..+++.+++++++||+||+||++++. ..+.++.++||||.|+.+++ ++
T Consensus 229 Pv~~t~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~l~~aDlvl~lG~~~~~------~~~~~~~~~I~vd~d~~~~~-~~ 300 (578)
T PRK06546 229 PVGHSLRGKEWIQYDNPFDVGMS-GLLGYGAAHEAMHEADLLILLGTDFPY------DQFLPDVRTAQVDIDPEHLG-RR 300 (578)
T ss_pred ceEECcccccCCCCCCccccCCC-CCCCCHHHHHHHHhCCEEEEEcCCCCh------hhcCCCCcEEEEeCCHHHhC-CC
Confidence 99999999999999999999984 888888999999999999999998752 12334567999999999887 33
Q ss_pred ccc----cccHHHHHHHHHHHhccCcc-ch-hh---hhhccCCC---CCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEe
Q 007917 345 SLG----WVFMADFLSALAKKLRKNTT-AL-EN---YRRIYVPP---GIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIA 412 (585)
Q Consensus 345 ~~~----~~~~~~~l~~L~~~l~~~~~-~~-~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~ 412 (585)
+.. ..|++.+|++|.+.+..+.. .| .. +++....+ ..........++++..+++.|++.++++++++.
T Consensus 301 ~~~~~~i~~D~~~~l~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~ 380 (578)
T PRK06546 301 TRVDLAVHGDVAETIRALLPLVKEKTDRRFLDRMLKKHARKLEKVVGAYTRKVEKHTPIHPEYVASILDELAADDAVFTV 380 (578)
T ss_pred CCCCeEEEcCHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHhhhhhhhccccCCCCCcCHHHHHHHHHHhccCCcEEEE
Confidence 222 24899999999988764321 11 11 11110000 000011223469999999999999999999999
Q ss_pred cCCcccccccc-ccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEE
Q 007917 413 ETGDSWFNCQK-LRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLI 487 (585)
Q Consensus 413 d~G~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~ 487 (585)
|.|++..|... +...++.+++.+.++|+|||++|+|||+++|+|+++||+++|||||+ ||+|+++|++|+++||+
T Consensus 381 d~G~~~~~~~~~~~~~~~~~~~~s~~~gsmG~~~paAiGa~la~p~~~vv~i~GDGsf~~~~~el~Ta~~~~lpv~~vV~ 460 (578)
T PRK06546 381 DTGMCNVWAARYITPNGRRRVIGSFRHGSMANALPHAIGAQLADPGRQVISMSGDGGLSMLLGELLTVKLYDLPVKVVVF 460 (578)
T ss_pred CCcHHHHHHHHhcCCCCCceEEccCCcccccchhHHHHHHHHhCCCCcEEEEEcCchHhhhHHHHHHHHHhCCCeEEEEE
Confidence 99998766543 44444566888889999999999999999999999999999999999 99999999999999999
Q ss_pred eCCceeeee--e-ecC--CCCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCC
Q 007917 488 NNGGYTIEV--E-IHD--GPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 562 (585)
Q Consensus 488 NN~~~~~~~--~-~~~--~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~ 562 (585)
||++|++.+ + ... ...++++++||.++|++||+ ++.+|++++||+++|+++++ .+||+||||.+++.+
T Consensus 461 NN~~~g~i~~~q~~~~~~~~~~~~~~~df~~lA~a~G~-----~~~~v~~~~el~~al~~a~~--~~gp~lIev~~~~~~ 533 (578)
T PRK06546 461 NNSTLGMVKLEMLVDGLPDFGTDHPPVDYAAIAAALGI-----HAVRVEDPKDVRGALREAFA--HPGPALVDVVTDPNA 533 (578)
T ss_pred ECCccccHHHHHHhcCCCcccccCCCCCHHHHHHHCCC-----eeEEeCCHHHHHHHHHHHHh--CCCCEEEEEEeCCCc
Confidence 999999832 1 111 12244678999999999999 99999999999999999996 789999999999876
Q ss_pred C
Q 007917 563 T 563 (585)
Q Consensus 563 ~ 563 (585)
.
T Consensus 534 ~ 534 (578)
T PRK06546 534 L 534 (578)
T ss_pred c
Confidence 4
No 40
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=100.00 E-value=5.5e-90 Score=757.70 Aligned_cols=515 Identities=17% Similarity=0.233 Sum_probs=420.9
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCC-CCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHHH
Q 007917 29 LGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEP-ELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLN 106 (585)
Q Consensus 29 ~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~-~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~ 106 (585)
++++|++.|+++||++|||+||+++.+|+++|.+++ +|++|.||||++|+|||+||+|+||+ |||++|+|||++|+++
T Consensus 1 ~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~~i~~v~~rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~ 80 (575)
T TIGR02720 1 ASAAVLKVLEAWGVDHIYGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLN 80 (575)
T ss_pred CHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCcEEEeccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHH
Confidence 479999999999999999999999999999997643 59999999999999999999999999 9999999999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCCcE
Q 007917 107 AIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPV 186 (585)
Q Consensus 107 gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV 186 (585)
||++||.+++|||+|+|+.++...+++ .+ |..||..+++++|||+.++.+++++++.+++|++.|.+++|||
T Consensus 81 ~i~~A~~~~~Pvl~I~G~~~~~~~~~~-----~~---q~id~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~GPV 152 (575)
T TIGR02720 81 GLYDAKEDHVPVLALVGQVPTTGMNMD-----TF---QEMNENPIYADVAVYNRTAMTAESLPHVIDEAIRRAYAHNGVA 152 (575)
T ss_pred HHHHHhhcCCCEEEEecCCccccCCCC-----Cc---ceechhhhhhhcceEEEEeCCHHHHHHHHHHHHHHHhhCCCCE
Confidence 999999999999999999998765543 22 3458899999999999999999999999999999999988999
Q ss_pred EEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCe
Q 007917 187 YISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (585)
Q Consensus 187 ~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv 266 (585)
||+||.|++..+.+.......+....+.. ...++++.+++++++|.+||||+|++|.|++ ++.++|.+|||++++||
T Consensus 153 ~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~L~~AkrPvil~G~g~~--~a~~~l~~lae~l~~PV 229 (575)
T TIGR02720 153 VVTIPVDFGWQEIPDNDYYASSVSYQTPL-LPAPDVEAVTRAVQTLKAAERPVIYYGIGAR--KAGEELEALSEKLKIPL 229 (575)
T ss_pred EEEECcchhhccccccccccccccccCCC-CCCCCHHHHHHHHHHHHcCCCcEEEECcchh--hHHHHHHHHHHHhCCCE
Confidence 99999999764322111000011000010 1123466899999999999999999999997 47899999999999999
Q ss_pred EEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecCCCcc
Q 007917 267 AIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSL 346 (585)
Q Consensus 267 ~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~~~~~ 346 (585)
+||++|||.||++||+++|++ |..+++.+++++++||+||++|++++.... .+. +.+..++||||.|+.+++ +.+.
T Consensus 230 ~tt~~gkg~~~~~hpl~~G~~-g~~~~~~~~~~l~~aDlvl~vG~~~~~~~~-~~~-~~~~~~~I~id~d~~~~~-~~~~ 305 (575)
T TIGR02720 230 ISTGLAKGIIEDRYPAYLGSA-YRVAQKPANEALFQADLVLFVGNNYPFAEV-SKA-FKNTKYFIQIDIDPAKLG-KRHH 305 (575)
T ss_pred EEcccccccCCCCCcccccCC-cCCCcHHHHHHHHhCCEEEEeCCCCCcccc-ccc-cCCCceEEEEeCCHHHhC-CCCC
Confidence 999999999999999999996 777888889999999999999999864322 122 223344699999998887 3333
Q ss_pred c----cccHHHHHHHHHHHhccCcc-chh-hhh---hccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEecCCcc
Q 007917 347 G----WVFMADFLSALAKKLRKNTT-ALE-NYR---RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDS 417 (585)
Q Consensus 347 ~----~~~~~~~l~~L~~~l~~~~~-~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d~G~~ 417 (585)
. ..|++.+|++|.+.+..+.. .|. .+. +...+...........++++.++++.|++.++++++++.|+|++
T Consensus 306 ~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~ii~~D~g~~ 385 (575)
T TIGR02720 306 TDIAVLADAKKALAAILAQVEPRESTPWWQANVANVKNWRAYLASLEDKTEGPLQAYQVYRAINKIAEDDAIYSIDVGDI 385 (575)
T ss_pred CCeEEecCHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhhccCCCCcCHHHHHHHHHHhCCCCcEEEeCCcHH
Confidence 2 24889999999988754321 121 110 00000000001122347999999999999999999999999998
Q ss_pred cccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCCce
Q 007917 418 WFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNGGY 492 (585)
Q Consensus 418 ~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~~~ 492 (585)
..|. .+++.+.+.+|+.+.++|+|||++|+|||+++|.|+|+||+++|||||+ ||+|++||++|+++||+||++|
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~gsmG~glpaAiGa~la~p~r~Vv~i~GDGsf~m~~~eL~Tavr~~lpi~~VV~NN~~y 465 (575)
T TIGR02720 386 NINSNRHLKMTPKNKWITSNLFATMGVGVPGAIAAKLNYPDRQVFNLAGDGAFSMTMQDLLTQVQYHLPVINIVFSNCTY 465 (575)
T ss_pred HHHHHHhCCcCCCCeEEcCCCcchhhchHHHHHHHHHhCCCCcEEEEEcccHHHhhHHHHHHHHHhCCCeEEEEEeCCcc
Confidence 7775 4456666667999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred eeee-e--ecCCCC--CCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhh--hcCCCCeEEEEEEcCCCCChH
Q 007917 493 TIEV-E--IHDGPY--NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTAT--GEQKDSLCFIEVFVHKDDTSK 565 (585)
Q Consensus 493 ~~~~-~--~~~~~~--~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~--~~~~~gp~vIeV~v~~~~~~~ 565 (585)
++.+ . ...+.+ .+++++||.++|++||+ ++++|++.+||+++|++++ + .++|+||||.+++++.++
T Consensus 466 g~i~~~~~~~~~~~~~~~~~~~df~~iA~a~G~-----~~~~v~~~~el~~al~~a~~~~--~~~p~liev~i~~~~~~~ 538 (575)
T TIGR02720 466 GFIKDEQEDTNQPLIGVDFNDADFAKIAEGVGA-----VGFRVNKIEQLPAVFEQAKAIK--QGKPVLIDAKITGDRPLP 538 (575)
T ss_pred HHHHHHHHHhCCCcccccCCCCCHHHHHHHCCC-----EEEEeCCHHHHHHHHHHHHhhC--CCCcEEEEEEeCCCCCCC
Confidence 9722 1 112222 35678999999999999 9999999999999999998 5 789999999999988655
No 41
>PRK06154 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-89 Score=752.37 Aligned_cols=512 Identities=20% Similarity=0.233 Sum_probs=416.3
Q ss_pred cCCcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhc--Cc-cEEEEeCCc
Q 007917 23 GASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSR--GV-GACVVTFTV 99 (585)
Q Consensus 23 ~~~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~t--g~-~v~~~t~Gp 99 (585)
+.+.++++++|++.|+++||++|||+|| .+|+++|.+ .+|++|.||||++|+|||+||+|+| |+ +||++|+||
T Consensus 16 ~~~~~~~a~~l~~~L~~~GV~~vFGip~---~~l~dal~~-~~i~~i~~rhE~~A~~mAdgyar~t~g~~~gv~~~t~GP 91 (565)
T PRK06154 16 EAKTMKVAEAVAEILKEEGVELLFGFPV---NELFDAAAA-AGIRPVIARTERVAVHMADGYARATSGERVGVFAVQYGP 91 (565)
T ss_pred CcCcccHHHHHHHHHHHcCCCEEEeCcC---HHHHHHHHh-cCCeEEeeCcHHHHHHHHHHHHHhcCCCCCEEEEECCCc
Confidence 3556899999999999999999999995 489999975 5899999999999999999999999 37 999999999
Q ss_pred chHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHh
Q 007917 100 GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTA 179 (585)
Q Consensus 100 G~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a 179 (585)
|++|+++||++||.+++|||+|+|+.+....+.+ +..|+..+|+++|||+.++.+++++++.|++||+.|
T Consensus 92 G~~N~~~gla~A~~~~~Pvl~i~G~~~~~~~~~~----------~~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A 161 (565)
T PRK06154 92 GAENAFGGVAQAYGDSVPVLFLPTGYPRGSTDVA----------PNFESLRNYRHITKWCEQVTLPDEVPELMRRAFTRL 161 (565)
T ss_pred cHHHHHHHHHHHhhcCCCEEEEeCCCCcccccCC----------CCcchhhhHhhcceeEEECCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887644332 124678999999999999999999999999999999
Q ss_pred hhc-CCcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHH
Q 007917 180 LKE-SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIEL 258 (585)
Q Consensus 180 ~~~-~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~l 258 (585)
.++ +|||||+||.|++..+ .... +.+..... .....+++..+++++++|.+||||+|++|.|++++++.+++.+|
T Consensus 162 ~s~~~GPV~l~iP~Dv~~~~--~~~~-~~~~~~~~-~~~~~~~~~~i~~aa~~L~~A~rPvil~G~g~~~~~a~~~l~~l 237 (565)
T PRK06154 162 RNGRPGPVVLELPVDVLAEE--LDEL-PLDHRPSR-RSRPGADPVEVVEAAALLLAAERPVIYAGQGVLYAQATPELKEL 237 (565)
T ss_pred hcCCCceEEEecchHHhhhh--cccc-cccccCCC-CCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHH
Confidence 996 6999999999997642 2110 11000000 00112345679999999999999999999999999999999999
Q ss_pred HHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCce
Q 007917 259 ADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRV 338 (585)
Q Consensus 259 ae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~ 338 (585)
||++++||+||++|||+||++||+++|.. |..+.+.+++++++||+||+||+++++... ++. +.++.++||||.|+.
T Consensus 238 ae~l~~PV~tt~~gkg~~~~~hpl~~G~~-g~~~~~~~~~~~~~aDlvL~lG~~l~~~~~-~~~-~~~~~~vI~id~d~~ 314 (565)
T PRK06154 238 AELLEIPVMTTLNGKSAFPEDHPLALGSG-GRARPATVAHFLREADVLFGIGCSLTRSYY-GLP-MPEGKTIIHSTLDDA 314 (565)
T ss_pred HHHhCCCEEECCCcccCCCCCCccccCCC-CCCCcHHHHHHHHhCCEEEEECCCCccccc-Ccc-CCCCCeEEEEECCHH
Confidence 99999999999999999999999999985 666777889999999999999999987543 333 344678999999999
Q ss_pred eecCCCcccc----ccHHHHHHHHHHHhccCccc----hhhh-------hhccCCCCCCCCCCCCCCCCHHHHHHHHHhh
Q 007917 339 TVGNGPSLGW----VFMADFLSALAKKLRKNTTA----LENY-------RRIYVPPGIPVKRAQNEPLRVNVLFKHIQDM 403 (585)
Q Consensus 339 ~~~~~~~~~~----~~~~~~l~~L~~~l~~~~~~----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 403 (585)
+++ +.+..+ .|++.+|++|.+.+..+... ...| ++...............++++.+++++|++.
T Consensus 315 ~~~-~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~ 393 (565)
T PRK06154 315 DLN-KDYPIDHGLVGDAALVLKQMIEELRRRVGPDRGRAQQVAAEIEAVRAAWLAKWMPKLTSDSTPINPYRVVWELQHA 393 (565)
T ss_pred Hhc-cccCCCeeEEcCHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHhHHhhhhhccCCCCCcCHHHHHHHHHHh
Confidence 887 333222 38999999998877643110 0112 1111001101111234479999999999999
Q ss_pred CC-CCCEEEecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHH
Q 007917 404 LS-GDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIR 477 (585)
Q Consensus 404 l~-~~~ii~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~ 477 (585)
++ ++.+++.|+|++..|. .++...++.+|+.+.++|+|||++|+|||+++|.|+|+||+++|||||+ ||+|++|
T Consensus 394 l~~~d~iv~~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la~p~r~Vv~i~GDG~f~m~~~EL~Ta~r 473 (565)
T PRK06154 394 VDIKTVIITHDAGSPRDQLSPFYVASRPGSYLGWGKTTQLGYGLGLAMGAKLARPDALVINLWGDAAFGMTGMDFETAVR 473 (565)
T ss_pred cCCCCEEEEECCcccHHHHHHhCCCCCCCeEEccCCCcccccHHHHHHHHHHhCCCCcEEEEEcchHHhccHHHHHHHHH
Confidence 97 5888888999988764 3455556667998889999999999999999999999999999999999 9999999
Q ss_pred hCCCeEEEEEeCCceeeeeeec---CCCC--CCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh-cCCCCe
Q 007917 478 CGQRSIIFLINNGGYTIEVEIH---DGPY--NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG-EQKDSL 551 (585)
Q Consensus 478 ~~lpv~ivV~NN~~~~~~~~~~---~~~~--~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~-~~~~gp 551 (585)
|++|+++||+||++|++.+..+ ...+ .+ .++||.++|++||+ ++++|++.+||+++|+++++ .+.++|
T Consensus 474 ~~lpi~~vV~NN~~yg~~~~~~~~~~~~~~~~~-~~~df~~lA~a~G~-----~g~~V~~~~el~~al~~a~~~~~~~~p 547 (565)
T PRK06154 474 ERIPILTILLNNFSMGGYDKVMPVSTTKYRATD-ISGDYAAIARALGG-----YGERVEDPEMLVPALLRALRKVKEGTP 547 (565)
T ss_pred hCCCeEEEEEECCccceeehhhhhhcCcccccC-CCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHhhccCCCe
Confidence 9999999999999999843221 1222 22 35799999999999 99999999999999999984 125789
Q ss_pred EEEEEEcCCCC
Q 007917 552 CFIEVFVHKDD 562 (585)
Q Consensus 552 ~vIeV~v~~~~ 562 (585)
+||||.+++++
T Consensus 548 ~lIev~v~~~~ 558 (565)
T PRK06154 548 ALLEVITSEET 558 (565)
T ss_pred EEEEEEeChHH
Confidence 99999998764
No 42
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=100.00 E-value=8.9e-90 Score=758.67 Aligned_cols=521 Identities=20% Similarity=0.275 Sum_probs=428.2
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHH
Q 007917 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (585)
Q Consensus 25 ~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (585)
..++++++|++.|+++||++|||+||+++.+|++++.+ .+|++|.||||++|+|||+||+|++|+ +||++|+|||++|
T Consensus 4 ~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~-~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n 82 (588)
T PRK07525 4 MKMTPSEAFVETLQAHGITHAFGIIGSAFMDASDLFPP-AGIRFIDVAHEQNAGHMADGYTRVTGRMGMVIGQNGPGITN 82 (588)
T ss_pred ccccHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhc-cCCCEEEecCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHH
Confidence 34899999999999999999999999999999999964 579999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcC
Q 007917 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKES 183 (585)
Q Consensus 104 ~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~ 183 (585)
+++||++|+.+++|||+|+|+.+....+.+ .+ |..||..+++++|||+.++++++++++.|++|++.|++++
T Consensus 83 ~~~gi~~A~~~~~Pvl~I~g~~~~~~~~~~-----~~---q~~d~~~l~~~~tk~~~~i~~~~~~~~~i~rA~~~A~~~~ 154 (588)
T PRK07525 83 FVTAVATAYWAHTPVVLVTPQAGTKTIGQG-----GF---QEAEQMPMFEDMTKYQEEVRDPSRMAEVLNRVFDKAKRES 154 (588)
T ss_pred HHHHHHHHhhcCCCEEEEeCCCCcccCCCC-----CC---cccchhhhhhhheeEEEECCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999988755543 12 3458899999999999999999999999999999999989
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhC
Q 007917 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (585)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~ 263 (585)
|||||+||.|++..+.+. ..+.+... .. ..+++..+++++++|.+|+||+|++|.|++++++.++|++|||++|
T Consensus 155 GPV~i~iP~Dv~~~~~~~--~~~~~~~~-~~---~~~~~~~i~~a~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~ 228 (588)
T PRK07525 155 GPAQINIPRDYFYGVIDV--EIPQPVRL-ER---GAGGEQSLAEAAELLSEAKFPVILSGAGVVLSDAIEECKALAERLD 228 (588)
T ss_pred CCEEEEcChhHhhhhccc--ccCccccC-CC---CCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhC
Confidence 999999999997643221 11111110 01 1224567999999999999999999999999899999999999999
Q ss_pred CCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccc---cccCCCcceEEEcCCceee
Q 007917 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGY---SLLIKKEKAIIVQPHRVTV 340 (585)
Q Consensus 264 ~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~---~~~~~~~~~i~id~~~~~~ 340 (585)
+||+||++|||.||++||+++|.+ |..++...++++++||+||+||+++++..+..+ ..+.++.++||||.|+..+
T Consensus 229 ~pv~tT~~gkg~~p~~hpl~~G~~-g~~g~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~~~ 307 (588)
T PRK07525 229 APVACGYLHNDAFPGSHPLWVGPL-GYNGSKAAMELIAKADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRI 307 (588)
T ss_pred CCeEEcccccccCCCCCccccccC-cccCcHHHHHHHHhCCEEEEECCCCchhhcccccccccCCCCCeEEEEECCHHHh
Confidence 999999999999999999999986 777888889999999999999999987655322 2344567899999999888
Q ss_pred cCCCcccc----ccHHHHHHHHHHHhccCc--------------cchhhhhh----ccCCCC------CCC-CCCCCCCC
Q 007917 341 GNGPSLGW----VFMADFLSALAKKLRKNT--------------TALENYRR----IYVPPG------IPV-KRAQNEPL 391 (585)
Q Consensus 341 ~~~~~~~~----~~~~~~l~~L~~~l~~~~--------------~~~~~~~~----~~~~~~------~~~-~~~~~~~~ 391 (585)
+ .++..+ .|++.+|++|.+.+.... .....|.+ ...... ... ......++
T Consensus 308 ~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 386 (588)
T PRK07525 308 G-LTKKVSVGICGDAKAVARELLARLAERLAGDAGREERKALIAAEKSAWEQELSSWDHEDDDPGTDWNEEARARKPDYM 386 (588)
T ss_pred C-CCCCCCceEecCHHHHHHHHHHhhhhhccccccchhhhhhhhhhHHHHHHHHHHHHhccccccccccccccccCCCCc
Confidence 6 333322 488999999988775320 00111211 000000 000 00123479
Q ss_pred CHHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH
Q 007917 392 RVNVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ 470 (585)
Q Consensus 392 ~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~ 470 (585)
++.+++++|++.+|++++++.|+|++..|. .+++.+++.+++.+.++|+|||++|+|||+++|.|+|+||+++|||||+
T Consensus 387 ~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glp~aiGa~la~p~r~vv~i~GDG~f~ 466 (588)
T PRK07525 387 HPRQALREIQKALPEDAIVSTDIGNNCSIANSYLRFEKGRKYLAPGSFGNCGYAFPAIIGAKIACPDRPVVGFAGDGAWG 466 (588)
T ss_pred CHHHHHHHHHHhCCCCcEEEECCcccHHHHHHhcccCCCCeEEccccccccccHHHHHHHHHHhCCCCcEEEEEcCchHh
Confidence 999999999999999999999999987665 4456666777999999999999999999999999999999999999999
Q ss_pred ----hHHHHHHhCCCeEEEEEeCCceeeeee----ecCCCC--CCC-CCCCHHHHHHHhcCCCCCccEEEecCHHHHHHH
Q 007917 471 ----EISTMIRCGQRSIIFLINNGGYTIEVE----IHDGPY--NVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEA 539 (585)
Q Consensus 471 ----eL~ta~~~~lpv~ivV~NN~~~~~~~~----~~~~~~--~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~a 539 (585)
||+|++++++|+++||+||++|++.+. .+++.+ .++ +.+||.++|++||+ ++++|++.+||+++
T Consensus 467 ~~~~el~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~el~~a 541 (588)
T PRK07525 467 ISMNEVMTAVRHNWPVTAVVFRNYQWGAEKKNQVDFYNNRFVGTELDNNVSYAGIAEAMGA-----EGVVVDTQEELGPA 541 (588)
T ss_pred ccHHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCC-----eEEEECCHHHHHHH
Confidence 999999999999999999999998321 112222 234 45899999999999 99999999999999
Q ss_pred HHHhhh-cCCCCeEEEEEEcCCCCChHHH
Q 007917 540 MKTATG-EQKDSLCFIEVFVHKDDTSKEL 567 (585)
Q Consensus 540 l~~a~~-~~~~gp~vIeV~v~~~~~~~~~ 567 (585)
|+++++ .+.++|+||||.++++..++.-
T Consensus 542 l~~a~~~~~~~~p~lIev~~~~~~~~~~~ 570 (588)
T PRK07525 542 LKRAIDAQNEGKTTVIEIMCNQELGEPFR 570 (588)
T ss_pred HHHHHhcCCCCCcEEEEEEeccccCCchH
Confidence 999986 1136999999999977654433
No 43
>PRK07524 hypothetical protein; Provisional
Probab=100.00 E-value=7.7e-89 Score=744.99 Aligned_cols=506 Identities=22% Similarity=0.288 Sum_probs=415.6
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHH
Q 007917 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (585)
.+++|+|++.|+++||++|||+||+++++|+++|.+ .+|++|.||||++|+|||+||||+||+ +||++|+|||++|++
T Consensus 2 ~~~a~~l~~~L~~~Gv~~vFg~pG~~~~~~~dal~~-~~i~~i~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~ 80 (535)
T PRK07524 2 TTCGEALVRLLEAYGVETVFGIPGVHTVELYRGLAG-SGIRHVTPRHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIA 80 (535)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhh-cCCcEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHH
Confidence 588999999999999999999999999999999975 489999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCccCCCcc-ceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-C
Q 007917 106 NAIAGAYSENLPVICIVGGPNSNDYGTNR-ILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (585)
Q Consensus 106 ~gl~~A~~~~~Pll~I~g~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (585)
+||++||.+++|||+|+|+.+....+++. ++| +..||.++|+++|||+.++.+++++++.|++|++.|.++ +
T Consensus 81 ~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~------~~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~ 154 (535)
T PRK07524 81 TAMGQAYADSIPMLVISSVNRRASLGKGRGKLH------ELPDQRAMVAGVAAFSHTLMSAEDLPEVLARAFAVFDSARP 154 (535)
T ss_pred HHHHHHHhcCCCEEEEeCCCChhhcCCCCcccc------ccccHHHHhhhhceeEEEeCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999987666532 222 345889999999999999999999999999999999986 6
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhC
Q 007917 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (585)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~ 263 (585)
|||||+||.|++.. +.+.....+. ... ....++++.+++++++|.+||||+|++|.|++ ++.++|.+|||+++
T Consensus 155 GPV~l~iP~Dv~~~--~~~~~~~~~~-~~~--~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~--~a~~~l~~lae~l~ 227 (535)
T PRK07524 155 RPVHIEIPLDVLAA--PADHLLPAPP-TRP--ARPGPAPAALAQAAERLAAARRPLILAGGGAL--AAAAALRALAERLD 227 (535)
T ss_pred CcEEEEeCHhHHhc--ccccccCccc-ccC--CCCCCCHHHHHHHHHHHHhCCCcEEEECCChH--HHHHHHHHHHHHHC
Confidence 99999999999764 3221111100 000 01123456799999999999999999999997 58899999999999
Q ss_pred CCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCccccc-c-cccCCCcceEEEcCCceeec
Q 007917 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVG-Y-SLLIKKEKAIIVQPHRVTVG 341 (585)
Q Consensus 264 ~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~-~-~~~~~~~~~i~id~~~~~~~ 341 (585)
+||++|++|||.||++||+++|.. | ++..+++++++||+||+||+++++..+.. | ..+.++.++||||.|+.+++
T Consensus 228 ~pV~tt~~~kg~~p~~hp~~~G~~-~--~~~~~~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 304 (535)
T PRK07524 228 APVALTINAKGLLPAGHPLLLGAS-Q--SLPAVRALIAEADVVLAVGTELGETDYDVYFDGGFPLPGELIRIDIDPDQLA 304 (535)
T ss_pred CCEEEcccccccCCCCChhhccCC-C--CCHHHHHHHHhCCEEEEeCCCcCccccccccccccCCCCCEEEEECCHHHhC
Confidence 999999999999999999999974 3 66788999999999999999987665421 1 12344568999999998886
Q ss_pred CCCccc----cccHHHHHHHHHHHhccCcc--chh-h-hhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEec
Q 007917 342 NGPSLG----WVFMADFLSALAKKLRKNTT--ALE-N-YRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAE 413 (585)
Q Consensus 342 ~~~~~~----~~~~~~~l~~L~~~l~~~~~--~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d 413 (585)
+.+.. ..|++.+|++|.+.++.+.. .|. + +.+.+... .. ......+++.++++.|++.+| +.+++.|
T Consensus 305 -~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~l~~~l~-~~~i~~d 379 (535)
T PRK07524 305 -RNYPPALALVGDARAALEALLARLPGQAAAADWGAARVAALRQAL--RA-EWDPLTAAQVALLDTILAALP-DAIFVGD 379 (535)
T ss_pred -CCcCCCceEecCHHHHHHHHHHhccccCCchhhHHHHHHHHHHhc--hh-hccccccCHHHHHHHHHHhCC-CCEEEeC
Confidence 33222 24899999999998765321 111 1 11111000 00 011234677889999999998 6888999
Q ss_pred CCcccccc-ccccccCCCeeEe-ccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEE
Q 007917 414 TGDSWFNC-QKLRLPENCGYEF-QMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLI 487 (585)
Q Consensus 414 ~G~~~~~~-~~~~~~~~~~~~~-~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~ 487 (585)
.|++.+|. .++..+++.+|+. +.++|+|||++|+|||+++|+|+++||+++|||||+ ||+|+++|++|+++||+
T Consensus 380 ~g~~~~~~~~~~~~~~p~~~~~~~~~~g~mG~~lp~aiGa~lA~p~~~vv~i~GDG~f~~~~~el~ta~~~~lpi~~vV~ 459 (535)
T PRK07524 380 STQPVYAGNLYFDADAPRRWFNASTGYGTLGYGLPAAIGAALGAPERPVVCLVGDGGLQFTLPELASAVEADLPLIVLLW 459 (535)
T ss_pred CcHHHHHHHHhcccCCCCceEeCCCCcccccchHHHHHHHHHhCCCCcEEEEEcchHHhhhHHHHHHHHHhCCCeEEEEE
Confidence 99887654 4566666667887 889999999999999999999999999999999999 99999999999999999
Q ss_pred eCCceeeeee-ec--CC--CCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCC
Q 007917 488 NNGGYTIEVE-IH--DG--PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKD 561 (585)
Q Consensus 488 NN~~~~~~~~-~~--~~--~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~ 561 (585)
||++|++.+. ++ .. .+.+++++||.++|++||+ ++++|++++||+++|+++++ .++|+||||++++-
T Consensus 460 NN~~~g~i~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~liev~~~~~ 531 (535)
T PRK07524 460 NNDGYGEIRRYMVARDIEPVGVDPYTPDFIALARAFGC-----AAERVADLEQLQAALRAAFA--RPGPTLIEVDQACW 531 (535)
T ss_pred ECCchHHHHHHHHHhcCCccccCCCCCCHHHHHHHCCC-----cEEEeCCHHHHHHHHHHHHh--CCCCEEEEEECCcc
Confidence 9999997211 11 11 2345678999999999999 99999999999999999996 79999999999874
No 44
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=2e-88 Score=747.82 Aligned_cols=531 Identities=23% Similarity=0.288 Sum_probs=428.9
Q ss_pred CccccccccCCcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEE
Q 007917 15 SAPAPVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GAC 93 (585)
Q Consensus 15 ~~~~~~~~~~~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~ 93 (585)
++|+.-.|.++.++++++|++.|+++||++|||+|+.. .+++++.+ ++|++|.||||++|+|||+||||+||+ +||
T Consensus 2 ~~~~~~~~~~~~~~~a~~i~~~L~~~GV~~vFG~~~~~--~~~~~~~~-~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~ 78 (578)
T PRK06112 2 SKPLSAPGFTLNGTVAHAIARALKRHGVEQIFGQSLPS--ALFLAAEA-IGIRQIAYRTENAGGAMADGYARVSGKVAVV 78 (578)
T ss_pred CcccCCCCCccCcCHHHHHHHHHHHCCCCEEeecccch--HhHHHHhh-cCCcEEEeccHHHHHHHHHHHHHHhCCCEEE
Confidence 45666667677899999999999999999999998653 34566754 579999999999999999999999999 999
Q ss_pred EEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHH
Q 007917 94 VVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELID 173 (585)
Q Consensus 94 ~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~ 173 (585)
++|+|||++|+++||++||.+++|||+|+|+.+....+++ .+ |..||..+|+++|||+.++.+++++++.++
T Consensus 79 ~~t~GpG~~N~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~-----~~---Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~ 150 (578)
T PRK06112 79 TAQNGPAATLLVAPLAEALKASVPIVALVQDVNRDQTDRN-----AF---QELDHIALFQSCTKWVRRVTVAERIDDYVD 150 (578)
T ss_pred EeCCCCcHHHHHHHHHHHhhcCCCEEEEecCCccccCCCC-----Cc---cccChhhhhccccceEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999999998866654 22 346899999999999999999999999999
Q ss_pred HHHHHhhhc-CCcEEEEecCCCCCCCCCCCCCCCCCccCCCCC-CChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhch
Q 007917 174 TAISTALKE-SKPVYISISCNLPGIPHPTFARDPVPFFLAPKV-SNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKA 251 (585)
Q Consensus 174 ~A~~~a~~~-~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a 251 (585)
+||+.|.++ +|||||+||.|++..+.+... .+.+....... ....+++..+++++++|.+||||+|++|+|+.++++
T Consensus 151 ~A~~~A~~~~~GPv~l~iP~Dv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a 229 (578)
T PRK06112 151 QAFTAATSGRPGPVVLLLPADLLTAAAAAPA-APRSNSLGHFPLDRTVPAPQRLAEAASLLAQAQRPVVVAGGGVHISGA 229 (578)
T ss_pred HHHHHHhhCCCCcEEEEcCHhHhhCcccccc-CcccccccCCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCccccch
Confidence 999999997 699999999999764321110 11110000000 011134567899999999999999999999998899
Q ss_pred HHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCC-CC----HHHHHHhhhCCEEEEeCCccCCcccccccccCC
Q 007917 252 QKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAV-SS----SFCGEIVESADAYVFVGPIFNDYSSVGYSLLIK 326 (585)
Q Consensus 252 ~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~-~~----~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~ 326 (585)
.+++.+|||++|+||++|++|||.||++||+++|.+ |.. ++ +.++++++++|+||+||++++++.+.+|..+.+
T Consensus 230 ~~~l~~lae~lg~pV~~t~~~kg~~p~~hp~~~G~~-g~~~~~~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~ 308 (578)
T PRK06112 230 SAALAALQSLAGLPVATTNMGKGAVDETHPLSLGVV-GSLMGPRSPGRHLRDLVREADVVLLVGTRTNQNGTDSWSLYPE 308 (578)
T ss_pred HHHHHHHHHHhCCCEEEcccccccCCCCCccccccc-cccCCCccchHHHHHHHHhCCEEEEECCCCCccccccccccCC
Confidence 999999999999999999999999999999999986 432 22 467789999999999999999988877766556
Q ss_pred CcceEEEcCCceeecCCCcc---ccccHHHHHHHHHHHhccCc--------cch-hhhh---hccCCCCCCCCCCCCCCC
Q 007917 327 KEKAIIVQPHRVTVGNGPSL---GWVFMADFLSALAKKLRKNT--------TAL-ENYR---RIYVPPGIPVKRAQNEPL 391 (585)
Q Consensus 327 ~~~~i~id~~~~~~~~~~~~---~~~~~~~~l~~L~~~l~~~~--------~~~-~~~~---~~~~~~~~~~~~~~~~~~ 391 (585)
..++||||.|+.+++ ..+. -..|++.+|++|.+.+...+ ..| ..+. +...............++
T Consensus 309 ~~~~i~id~d~~~~~-~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 387 (578)
T PRK06112 309 QAQYIHIDVDGEEVG-RNYEALRLVGDARLTLAALTDALRGRDLAARAGRRAALEPAIAAGREAHREDSAPVALSDASPI 387 (578)
T ss_pred CCeEEEEECChHHhC-ccccceEEEeCHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHhhhhhhhhhhcCCCCCc
Confidence 678999999998876 2221 12488999999988764321 111 1111 111000000011123469
Q ss_pred CHHHHHHHHHhhCCCCCEEEecCCccccccc-cccccC-CCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchh
Q 007917 392 RVNVLFKHIQDMLSGDTAVIAETGDSWFNCQ-KLRLPE-NCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF 469 (585)
Q Consensus 392 ~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~~-~~~~~~-~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf 469 (585)
++.++++.|++.++++++++.|+|++..|.. ++.... ..+|+++.++|+|||++|+|+|+++|+|+++|||++|||||
T Consensus 388 ~~~~v~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~gsmG~~l~~aiGa~la~~~~~vv~i~GDGsf 467 (578)
T PRK06112 388 RPERIMAELQAVLTGDTIVVADASYSSIWVANFLTARRAGMRFLTPRGLAGLGWGVPMAIGAKVARPGAPVICLVGDGGF 467 (578)
T ss_pred CHHHHHHHHHHhCCCCCEEEEcccHHHHHHHHhcCccCCCceEECCCCccccccHHHHHHHHHhhCCCCcEEEEEcchHH
Confidence 9999999999999999999999998876653 344433 33588889999999999999999999999999999999999
Q ss_pred H----hHHHHHHhCCCeEEEEEeCCceeeeeee----cCC--CCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHH
Q 007917 470 Q----EISTMIRCGQRSIIFLINNGGYTIEVEI----HDG--PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEA 539 (585)
Q Consensus 470 ~----eL~ta~~~~lpv~ivV~NN~~~~~~~~~----~~~--~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~a 539 (585)
+ ||+|+++|++|+++||+||++|++.... +.. .+.++.++||.++|++||+ ++++|++.+||+++
T Consensus 468 ~~~~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~-----~~~~v~~~~el~~a 542 (578)
T PRK06112 468 AHVWAELETARRMGVPVTIVVLNNGILGFQKHAETVKFGTHTDACHFAAVDHAAIARACGC-----DGVRVEDPAELAQA 542 (578)
T ss_pred HhHHHHHHHHHHhCCCeEEEEEeCCccCCEEeccccccCCccccCcCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHH
Confidence 9 9999999999999999999999984321 111 2234567999999999999 99999999999999
Q ss_pred HHHhhhcCCCCeEEEEEEcCCCCChHH
Q 007917 540 MKTATGEQKDSLCFIEVFVHKDDTSKE 566 (585)
Q Consensus 540 l~~a~~~~~~gp~vIeV~v~~~~~~~~ 566 (585)
|+++++ .+||+||||++++++.|+.
T Consensus 543 l~~a~~--~~gp~lIev~~~~~~~p~~ 567 (578)
T PRK06112 543 LAAAMA--APGPTLIEVITDPSAFPPI 567 (578)
T ss_pred HHHHHh--CCCCEEEEEEcCcccCCCc
Confidence 999986 7899999999999998863
No 45
>PRK07064 hypothetical protein; Provisional
Probab=100.00 E-value=6.6e-89 Score=748.05 Aligned_cols=505 Identities=23% Similarity=0.295 Sum_probs=412.5
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (585)
.++++++|++.|+++||++|||+||+++.+|++++.++++|++|.||||++|+|||+||+|+||+ +||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~Gv~~vFgvpG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~ 81 (544)
T PRK07064 2 KVTVGELIAAFLEQCGVKTAFGVISIHNMPILDAIGRRGKIRFVPARGEAGAVNMADAHARVSGGLGVALTSTGTGAGNA 81 (544)
T ss_pred CccHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhccCCccEEeeccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHH
Confidence 47899999999999999999999999999999999765689999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCccCCCcc-ceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-
Q 007917 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNR-ILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (585)
Q Consensus 105 ~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (585)
++||++||.+++|||+|+|+.++...+++. ++| +..||.++|+++|||+.++++++++++.|++|++.|.++
T Consensus 82 ~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~------~~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~ 155 (544)
T PRK07064 82 AGALVEALTAGTPLLHITGQIETPYLDQDLGYIH------EAPDQLTMLRAVSKAAFRVRSAETALATIREAVRVALTAP 155 (544)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccccCCCcccc------cccCHHHHhhhhcceEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 999999999999999999998887655542 222 345889999999999999999999999999999999997
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHh
Q 007917 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (585)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l 262 (585)
+|||||+||.|++..+.+.. ....+. .. ....++++.+++++++|.+||||+|++|.|+. ++.++|.+||| +
T Consensus 156 ~GPV~l~iP~dv~~~~~~~~-~~~~~~--~~--~~~~~~~~~i~~~~~~l~~AkrPvi~~G~g~~--~a~~~l~~lae-~ 227 (544)
T PRK07064 156 TGPVSVEIPIDIQAAEIELP-DDLAPV--HV--AVPEPDAAAVAELAERLAAARRPLLWLGGGAR--HAGAEVKRLVD-L 227 (544)
T ss_pred CCcEEEEeCHhHhhcccccc-cccccc--cC--CCCCCCHHHHHHHHHHHHhCCCCEEEECCChH--hHHHHHHHHHH-c
Confidence 79999999999976422111 000011 10 11123456789999999999999999999987 47889999999 9
Q ss_pred CCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecC
Q 007917 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (585)
Q Consensus 263 ~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~ 342 (585)
++||++|++|||+||++||+++|++ + +++.+++++++||+||+||+++++..+..|....+ .++||||.|+..++
T Consensus 228 ~~pv~~t~~~kg~~~~~hp~~~G~~-~--~~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~-~~~i~id~d~~~~~- 302 (544)
T PRK07064 228 GFGVVTSTQGRGVVPEDHPASLGAF-N--NSAAVEALYKTCDLLLVVGSRLRGNETLKYSLALP-RPLIRVDADAAADG- 302 (544)
T ss_pred CCCEEEccCccccCCCCChhhcccC-C--CCHHHHHHHHhCCEEEEecCCCCcccccccccCCC-CceEEEeCCHHHhC-
Confidence 9999999999999999999999986 3 67788899999999999999999888766654333 47999999998876
Q ss_pred CCcc----ccccHHHHHHHHHHHhccCc---cch-hhhhhccCCCCCCCCCCCCCCCCH-HHHHHHHHhhCCCCCEEEec
Q 007917 343 GPSL----GWVFMADFLSALAKKLRKNT---TAL-ENYRRIYVPPGIPVKRAQNEPLRV-NVLFKHIQDMLSGDTAVIAE 413 (585)
Q Consensus 343 ~~~~----~~~~~~~~l~~L~~~l~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~~l~~~~ii~~d 413 (585)
..+. ...|++.+|++|.+.+.... ..| ..+...+.... . . ...++.+ ..+++.|++.+|++++++.|
T Consensus 303 ~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~-~-~--~~~~~~~~~~~~~~l~~~l~~~~ii~~d 378 (544)
T PRK07064 303 RGYPNDLFVHGDAARVLARLADRLEGRLSVDPAFAADLRAAREAAV-A-D--LRKGLGPYAKLVDALRAALPRDGNWVRD 378 (544)
T ss_pred CcCCCCceEecCHHHHHHHHHHhhhhccccchHHHHHHHHHHHhhh-h-h--cccccCcHHHHHHHHHHhCCCCCEEEeC
Confidence 3222 23589999999988775421 112 11111110000 0 0 0123444 56999999999999999999
Q ss_pred CCcc-ccc-cccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEE
Q 007917 414 TGDS-WFN-CQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLI 487 (585)
Q Consensus 414 ~G~~-~~~-~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~ 487 (585)
+|.+ ..| ..+++.+.+..++++.+ |+|||++|+|||+++|+|+++||+++|||||+ ||+|++||++|+++||+
T Consensus 379 ~~~~~~~~~~~~~~~~~p~~~~~~~~-g~mG~~lpaAiGa~lA~p~~~vv~i~GDGsf~m~~~eL~Ta~~~~lpv~ivV~ 457 (544)
T PRK07064 379 VTISNSTWGNRLLPIFEPRANVHALG-GGIGQGLAMAIGAALAGPGRKTVGLVGDGGLMLNLGELATAVQENANMVIVLM 457 (544)
T ss_pred CccchHHHHHHhcCccCCCceeccCC-CccccccchhhhhhhhCcCCcEEEEEcchHhhhhHHHHHHHHHhCCCeEEEEE
Confidence 9853 443 34455555544666555 89999999999999999999999999999999 99999999999999999
Q ss_pred eCCceeeeeee----cCC--CCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCC
Q 007917 488 NNGGYTIEVEI----HDG--PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKD 561 (585)
Q Consensus 488 NN~~~~~~~~~----~~~--~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~ 561 (585)
||++|++.+.. +.. .++++.++||.++|++||+ ++++|++++||+++|+++++ .++|+||||.++..
T Consensus 458 NN~~yg~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~eL~~al~~a~~--~~~p~lIeV~~~~~ 530 (544)
T PRK07064 458 NDGGYGVIRNIQDAQYGGRRYYVELHTPDFALLAASLGL-----PHWRVTSADDFEAVLREALA--KEGPVLVEVDMLSI 530 (544)
T ss_pred eCChhHHHHHHHHHhcCCccccccCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHc--CCCCEEEEEEcccc
Confidence 99999983211 122 3556778999999999999 99999999999999999986 78999999999843
No 46
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=100.00 E-value=1.7e-88 Score=744.75 Aligned_cols=515 Identities=21% Similarity=0.236 Sum_probs=414.2
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (585)
.++++++|++.|+++||+||||+||+++.++++++.+ ++|++|.||||++|+|||+||+|+||+ +||++|+|||++|+
T Consensus 2 ~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~-~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~ 80 (554)
T TIGR03254 2 LTDGFHLVIDALKLNGINTIYGVVGIPVTDLARLAQA-KGMRYIGFRHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNG 80 (554)
T ss_pred CCcHHHHHHHHHHHcCCCEEEeCCCcchhHHHHHHhh-cCCcEEEeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhH
Confidence 4679999999999999999999999999999999964 589999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-C
Q 007917 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (585)
Q Consensus 105 ~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (585)
++||++|+.+++|||+|+|+.+....+.+ .+..|..||..+|+++|||+.++.+++++++.|++||+.|.++ |
T Consensus 81 ~~gia~A~~~~~Pvl~I~G~~~~~~~~~~------~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~p 154 (554)
T TIGR03254 81 LTALANATTNCFPMIMISGSSERHIVDLQ------QGDYEEMDQLAAAKPFAKAAYRVLRAEDIGIGIARAIRTAVSGRP 154 (554)
T ss_pred HHHHHHHHhcCCCEEEEEccCCccccccC------CCCcchhhHHHHhhhhheeEEEcCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999887632211 1112346899999999999999999999999999999999986 6
Q ss_pred CcEEEEecCCCCCCCCCCCCCCC-CCc-cCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHH
Q 007917 184 KPVYISISCNLPGIPHPTFARDP-VPF-FLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (585)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~ 261 (585)
|||||+||.|++..+ ...... .+. ..........+.+..+++++++|.+||||+|++|.|++++++.+++.+|+|+
T Consensus 155 GPV~l~iP~Dv~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~ 232 (554)
T TIGR03254 155 GGVYLDLPAAVLGQT--MEAEKAKKTLVKVVDPAPKQLPSPDSVDRAVELLKDAKRPLILLGKGAAYAQADEEIREFVEK 232 (554)
T ss_pred CcEEEEcCHHHhhcc--ccccccccccccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHH
Confidence 999999999997643 221110 000 0000001112345679999999999999999999999998999999999999
Q ss_pred hCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCccccccc-ccCCCcceEEEcCCceee
Q 007917 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYS-LLIKKEKAIIVQPHRVTV 340 (585)
Q Consensus 262 l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~-~~~~~~~~i~id~~~~~~ 340 (585)
+++||++|++|||+||++||+++|. ..++++++||+||+||++++++.+.+|. .+.+..++||||.|+..+
T Consensus 233 ~~~pv~tt~~gkg~~p~~hp~~~g~--------~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~vI~id~d~~~~ 304 (554)
T TIGR03254 233 TGIPFLPMSMAKGLLPDTHPQSAAA--------ARSFALAEADVVMLVGARLNWLLSHGKGKLWGEDAKFIQVDIEPTEM 304 (554)
T ss_pred HCCCEEEcCCcceeCCCCCchhhhH--------HHHHHHhcCCEEEEECCCCchhhccCchhhcCCCCcEEEcCCCHHHh
Confidence 9999999999999999999999874 3567899999999999999988776553 344567899999999887
Q ss_pred cCCCccc----cccHHHHHHHHHHHhccC----ccchh----hhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCC--
Q 007917 341 GNGPSLG----WVFMADFLSALAKKLRKN----TTALE----NYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSG-- 406 (585)
Q Consensus 341 ~~~~~~~----~~~~~~~l~~L~~~l~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~-- 406 (585)
+ .++.. ..|++.+|++|.+.++.. ...|. ++++...............++++..+++.|++.+++
T Consensus 305 ~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ 383 (554)
T TIGR03254 305 D-SNRPIAAPVVGDIGSVVQALLSAAKNGGVKPPADWRNAIKTKSEKNVAKMAERLSASESPMNYHGALEAIRDVLKDNP 383 (554)
T ss_pred C-CCcCCceEEecCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHhchhhhhhhcccCCCCcCHHHHHHHHHHhcCCCC
Confidence 6 32221 238999999999887532 11121 111111100000001123479999999999999974
Q ss_pred CCEEEecCCcccccccc-ccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCC
Q 007917 407 DTAVIAETGDSWFNCQK-LRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQR 481 (585)
Q Consensus 407 ~~ii~~d~G~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lp 481 (585)
+.+++.|.|++..|..+ +...++.+++.+.++|+|||++|+|||+++| ++++||+++|||||+ ||+|++||++|
T Consensus 384 ~~ivv~d~~~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGaala-~~~~vv~i~GDGsf~m~~~EL~Ta~r~~l~ 462 (554)
T TIGR03254 384 DIYLVNEGANTLDLARNVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAVE-TGKPVVALEGDSAFGFSGMEVETICRYNLP 462 (554)
T ss_pred CEEEEeCCchHHHHHHHhcccCCCCcEeeCCCCCcCCchHHHHHHHHhc-CCCcEEEEEcCchhcccHHHHHHHHHcCCC
Confidence 67788888877666543 4444455588899999999999999999998 589999999999999 99999999999
Q ss_pred eEEEEEeCCceeeeee--ecC--CCCCCC-CCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEE
Q 007917 482 SIIFLINNGGYTIEVE--IHD--GPYNVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEV 556 (585)
Q Consensus 482 v~ivV~NN~~~~~~~~--~~~--~~~~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV 556 (585)
+++||+||++|....+ .+. ..+.++ +++||.++|++||+ ++++|++.+||+++|+++++ .++|+||||
T Consensus 463 v~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~lIev 535 (554)
T TIGR03254 463 VCVVIFNNGGIYRGDDVNVVGADPAPTVLVHGARYDKMMKAFGG-----VGYNVTTPDELKAALNEALA--SGKPTLINA 535 (554)
T ss_pred EEEEEEeChhhhhhhhhhhcCCCCCccccCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEE
Confidence 9999999999843211 111 123444 68999999999999 99999999999999999986 789999999
Q ss_pred EcCCCCChHH
Q 007917 557 FVHKDDTSKE 566 (585)
Q Consensus 557 ~v~~~~~~~~ 566 (585)
.+++++.++.
T Consensus 536 ~id~~~~~~~ 545 (554)
T TIGR03254 536 VIDPSAGTES 545 (554)
T ss_pred EECCCcCCcc
Confidence 9998887653
No 47
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=100.00 E-value=6.8e-88 Score=741.60 Aligned_cols=515 Identities=21% Similarity=0.246 Sum_probs=410.9
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (585)
+++++++|++.|+++||++|||+||+.+.++++++.+ ++|++|.||||++|+|||+||+|+||+ |||++|+|||++|+
T Consensus 9 ~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~~~~~~-~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~ 87 (569)
T PRK09259 9 LTDGFHLVIDALKLNGIDTIYGVVGIPITDLARLAQA-EGIRYIGFRHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNG 87 (569)
T ss_pred CCcHHHHHHHHHHHcCCCEEEeCCCcchHHHHHHHhh-CCCCEEeeCCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHH
Confidence 4789999999999999999999999999999999964 589999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-C
Q 007917 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (585)
Q Consensus 105 ~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (585)
++||++|+.+++|||+|+|+.++...+.+ +.. .|..||..+|+++|||+.++.+++++++.|++||+.|.++ |
T Consensus 88 l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~---~~~---~q~~d~~~~~~~~tk~s~~v~~~~~~~~~i~~A~~~A~~~~~ 161 (569)
T PRK09259 88 LTALANATTNCFPMIMISGSSEREIVDLQ---QGD---YEELDQLNAAKPFCKAAFRVNRAEDIGIGVARAIRTAVSGRP 161 (569)
T ss_pred HHHHHHHHhcCCCEEEEEccCCccccccc---CCC---ccccchhhhhhhheeeeEEcCCHHHHHHHHHHHHHHhhhCCC
Confidence 99999999999999999999876532211 012 2346899999999999999999999999999999999996 7
Q ss_pred CcEEEEecCCCCCCCCCCCCCC-CCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHh
Q 007917 184 KPVYISISCNLPGIPHPTFARD-PVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (585)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l 262 (585)
|||||+||.|++..+.+..... +......+. ....+++..+++++++|.+||||+|++|.|++++++.+++.+|||++
T Consensus 162 GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~L~~AkrPvIi~G~g~~~~~a~~~l~~lae~l 240 (569)
T PRK09259 162 GGVYLDLPAKVLAQTMDADEALTSLVKVVDPA-PAQLPAPEAVDRALDLLKKAKRPLIILGKGAAYAQADEQIREFVEKT 240 (569)
T ss_pred CcEEEEeCHHHhhCcccccccccccccccCCC-CCCCCCHHHHHHHHHHHHhCCCCEEEECcCccccChHHHHHHHHHHH
Confidence 9999999999976432211000 000000010 01123456799999999999999999999999989999999999999
Q ss_pred CCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccc-cccCCCcceEEEcCCceeec
Q 007917 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGY-SLLIKKEKAIIVQPHRVTVG 341 (585)
Q Consensus 263 ~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~-~~~~~~~~~i~id~~~~~~~ 341 (585)
++||++|++|||+||++||+++|. ..++++++||+||+||+++++..+..+ ..+.++.++||||.|+.+++
T Consensus 241 ~iPV~tt~~gkg~~~e~hpl~~G~--------~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~ii~Id~d~~~~~ 312 (569)
T PRK09259 241 GIPFLPMSMAKGLLPDTHPQSAAA--------ARSLALANADVVLLVGARLNWLLSHGKGKTWGADKKFIQIDIEPQEID 312 (569)
T ss_pred CCCEEecccccccCCCCChhhhhH--------HHHHHHhcCCEEEEeCCCCchhcccCchhccCCCCcEEEecCChHHhc
Confidence 999999999999999999999985 346778999999999999988766544 23445678999999998876
Q ss_pred CCCccc----cccHHHHHHHHHHHhccCc----cch-h---hhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCC--CC
Q 007917 342 NGPSLG----WVFMADFLSALAKKLRKNT----TAL-E---NYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLS--GD 407 (585)
Q Consensus 342 ~~~~~~----~~~~~~~l~~L~~~l~~~~----~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~--~~ 407 (585)
..+.. ..|++.+|++|.+.++... ..| + .+++...............++++.++++.|++.++ ++
T Consensus 313 -~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~d 391 (569)
T PRK09259 313 -SNRPIAAPVVGDIGSVMQALLAGLKQNTFKAPAEWLDALAERKEKNAAKMAEKLSTDTQPMNFYNALGAIRDVLKENPD 391 (569)
T ss_pred -CCccCceeEecCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHhChhhhhhhhcCCCCCcCHHHHHHHHHHHhCCCCC
Confidence 22211 2489999999998875321 112 1 11111110100000113347999999999999995 47
Q ss_pred CEEEecCCccccccc-cccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCe
Q 007917 408 TAVIAETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRS 482 (585)
Q Consensus 408 ~ii~~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv 482 (585)
.+++.|.|++..+.. ++....+.+++++.++|+|||++|+|||+++| ++++||+++|||||+ ||+|++||++|+
T Consensus 392 ~iv~~~~~~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la-~~~~vv~i~GDG~f~m~~~EL~Ta~r~~lpi 470 (569)
T PRK09259 392 IYLVNEGANTLDLARNIIDMYKPRHRLDCGTWGVMGIGMGYAIAAAVE-TGKPVVAIEGDSAFGFSGMEVETICRYNLPV 470 (569)
T ss_pred EEEEeCchHHHHHHHHhcccCCCCceEeCCCCccccccHHHHHHHHhc-CCCcEEEEecCccccccHHHHHHHHHcCCCE
Confidence 788888777655543 34444444588888999999999999999999 689999999999999 999999999999
Q ss_pred EEEEEeCCcee--eeeeecC-CC--CCCC-CCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEE
Q 007917 483 IIFLINNGGYT--IEVEIHD-GP--YNVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEV 556 (585)
Q Consensus 483 ~ivV~NN~~~~--~~~~~~~-~~--~~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV 556 (585)
++||+||++|. ++..... .. ..++ +++||.++|++||+ ++++|++.+||+++|+++++ .++|+||||
T Consensus 471 ~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~lIev 543 (569)
T PRK09259 471 TVVIFNNGGIYRGDDVNLSGAGDPSPTVLVHHARYDKMMEAFGG-----VGYNVTTPDELRHALTEAIA--SGKPTLINV 543 (569)
T ss_pred EEEEEeChhHHHHHHHHhhcCCCccccccCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCEEEEE
Confidence 99999999862 2211111 11 1233 68999999999999 99999999999999999996 789999999
Q ss_pred EcCCCCChH
Q 007917 557 FVHKDDTSK 565 (585)
Q Consensus 557 ~v~~~~~~~ 565 (585)
.+++++.++
T Consensus 544 ~id~~~~~~ 552 (569)
T PRK09259 544 VIDPAAGTE 552 (569)
T ss_pred EECCCCCCC
Confidence 999887664
No 48
>PRK08266 hypothetical protein; Provisional
Probab=100.00 E-value=6.6e-88 Score=739.29 Aligned_cols=506 Identities=23% Similarity=0.299 Sum_probs=414.2
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-CCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-PELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~-~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (585)
.++++++|++.|+++||++|||+||+++.+|+++|.+. ++|++|.++||++|+|||+||+|+||+ +||++|+|||++|
T Consensus 3 ~~~~~~~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N 82 (542)
T PRK08266 3 TMTGGEAIVAGLVAHGVDTVFGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLN 82 (542)
T ss_pred CCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhcCCCCeEEeeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHH
Confidence 47999999999999999999999999999999999764 579999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-
Q 007917 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (585)
Q Consensus 104 ~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (585)
+++||++|+.+++|||+|+|+.++...+++.. +.++..||..+|+++|||+.++.+++++++.|++|++.|.++
T Consensus 83 ~~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~~~-----~~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~ 157 (542)
T PRK08266 83 AGAALLTAYGCNSPVLCLTGQIPSALIGKGRG-----HLHEMPDQLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSGR 157 (542)
T ss_pred HHHHHHHHHhhCCCEEEEecCCChhhccCCCC-----cceecccHhhHHhhhcceEEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999876555421 112335899999999999999999999999999999999996
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHh
Q 007917 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (585)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l 262 (585)
+|||||+||.|++..+.+.. ..+ ...... ...++++.+++++++|.+||||+|++|.|+. ++.++|.+|||++
T Consensus 158 ~GPV~l~iP~dv~~~~~~~~-~~~-~~~~~~---~~~~~~~~i~~~~~~L~~AkrPvIv~G~g~~--~a~~~l~~lae~~ 230 (542)
T PRK08266 158 PRPVALEMPWDVFGQRAPVA-AAP-PLRPAP---PPAPDPDAIAAAAALIAAAKNPMIFVGGGAA--GAGEEIRELAEML 230 (542)
T ss_pred CCcEEEEeCHhHhhCccccc-ccc-cccCCC---CCCCCHHHHHHHHHHHHhCCCCEEEECCChh--hHHHHHHHHHHHH
Confidence 69999999999976422211 101 110000 1123456789999999999999999999964 5899999999999
Q ss_pred CCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecC
Q 007917 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (585)
Q Consensus 263 ~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~ 342 (585)
|+||++|+.|||.||++||+++|.. .+++++++||+||+||+++++. +..|..+.+..++||||.|+..++
T Consensus 231 g~pv~tt~~~kg~~~~~hp~~~g~~-------~~~~~~~~aDlvl~lG~~~~~~-~~~~~~~~~~~~~i~id~d~~~~~- 301 (542)
T PRK08266 231 QAPVVAFRSGRGIVSDRHPLGLNFA-------AAYELWPQTDVVIGIGSRLELP-TFRWPWRPDGLKVIRIDIDPTEMR- 301 (542)
T ss_pred CCCEEEeccccccCCCCCccccCCH-------HHHHHHHhCCEEEEeCCCcCcc-cccccccCCCCcEEEEECCHHHhC-
Confidence 9999999999999999999998752 4677889999999999999887 545654445568999999998886
Q ss_pred CCcccc----ccHHHHHHHHHHHhccC---ccch-hhhhhccCCCCCCCCCCCCCCCCHH-HHHHHHHhhCCCCCEEEec
Q 007917 343 GPSLGW----VFMADFLSALAKKLRKN---TTAL-ENYRRIYVPPGIPVKRAQNEPLRVN-VLFKHIQDMLSGDTAVIAE 413 (585)
Q Consensus 343 ~~~~~~----~~~~~~l~~L~~~l~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~~~ii~~d 413 (585)
+ +..+ .|++.+|++|.+.++.. ...| ..+..... .... ....+++. .+++.|++.+|++.+++.|
T Consensus 302 ~-~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~l~~~lp~d~ivv~d 375 (542)
T PRK08266 302 R-LKPDVAIVADAKAGTAALLDALSKAGSKRPSRRAELRELKA-AARQ----RIQAVQPQASYLRAIREALPDDGIFVDE 375 (542)
T ss_pred C-cCCCceEecCHHHHHHHHHHhhhhcccCchHHHHHHHHHHH-hhhh----ccccCCHHHHHHHHHHHhcCCCcEEEeC
Confidence 3 3332 48899999999887642 1111 11111100 0000 00125665 4899999999999999999
Q ss_pred CCcccccccc-ccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEe
Q 007917 414 TGDSWFNCQK-LRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLIN 488 (585)
Q Consensus 414 ~G~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~N 488 (585)
+|++.+|..+ ++...+.+++.+.++|+|||++|+|||+++++|+++||+++|||||+ ||+|+++|++|+++||+|
T Consensus 376 ~g~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lp~aiGa~la~p~~~vv~v~GDG~f~~~~~eL~ta~~~~lpv~ivv~N 455 (542)
T PRK08266 376 LSQVGFASWFAFPVYAPRTFVTCGYQGTLGYGFPTALGAKVANPDRPVVSITGDGGFMFGVQELATAVQHNIGVVTVVFN 455 (542)
T ss_pred CcHHHHHHHHhcccCCCCcEEeCCCCcccccHHHHHHHHHHhCCCCcEEEEEcchhhhccHHHHHHHHHhCCCeEEEEEe
Confidence 9998766543 44445556888889999999999999999999999999999999999 999999999999999999
Q ss_pred CCceeeee----eecCC--CCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCC
Q 007917 489 NGGYTIEV----EIHDG--PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 562 (585)
Q Consensus 489 N~~~~~~~----~~~~~--~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~ 562 (585)
|++|++.+ ..+++ .++++.++||.++|++||+ ++++|++.+||+++|+++++ .++|+||||.+++.+
T Consensus 456 N~~y~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~liev~i~~~~ 528 (542)
T PRK08266 456 NNAYGNVRRDQKRRFGGRVVASDLVNPDFVKLAESFGV-----AAFRVDSPEELRAALEAALA--HGGPVLIEVPVPRGS 528 (542)
T ss_pred CCcchHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCC-----eEEEeCCHHHHHHHHHHHHh--CCCcEEEEEEecCCC
Confidence 99999722 11222 2244567899999999999 99999999999999999986 789999999999886
Q ss_pred ChH
Q 007917 563 TSK 565 (585)
Q Consensus 563 ~~~ 565 (585)
...
T Consensus 529 ~~~ 531 (542)
T PRK08266 529 EAS 531 (542)
T ss_pred Ccc
Confidence 653
No 49
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=6.6e-87 Score=732.39 Aligned_cols=512 Identities=20% Similarity=0.235 Sum_probs=408.8
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCC-----CCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCc
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEP-----ELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTV 99 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~-----~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~Gp 99 (585)
+++++|+|++.|+++||++|||+||+++.+|++++.+++ +|++|.||||++|+||||||+|+||+ |||++|+||
T Consensus 6 ~~~~a~~l~~~L~~~GV~~iFgvpG~~~~~l~dal~~~~~~g~~~i~~V~~rhE~~A~~~Adgyar~tgk~gv~~~t~GP 85 (569)
T PRK08327 6 MYTAAELFLELLKELGVDYIFINSGTDYPPIIEAKARARAAGRPLPEFVICPHEIVAISMAHGYALVTGKPQAVMVHVDV 85 (569)
T ss_pred cccHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHHhhhhcCCCCCcEEecCCHHHHHHHHHHHHHhhCCCeEEEEecCH
Confidence 468999999999999999999999999999999997543 39999999999999999999999999 999999999
Q ss_pred chHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCcc---ceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHH
Q 007917 100 GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNR---ILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAI 176 (585)
Q Consensus 100 G~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~---~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~ 176 (585)
|++|+++||++||.+++|||+|+|+.+....+++. ..++.+| +..||..+|+++|||+.++.+++++.+.|++|+
T Consensus 86 G~~N~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~q--e~~d~~~~~~~vtk~~~~v~~~~~~~~~l~~A~ 163 (569)
T PRK08327 86 GTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQ--EMRDQGGLVREYVKWDYEIRRGDQIGEVVARAI 163 (569)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCccccccccccccCcccch--hhhhHHHHHhhhhhhhcccCCHHHHHHHHHHHH
Confidence 99999999999999999999999998877554421 1112232 235899999999999999999999999999999
Q ss_pred HHhhhc-CCcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHH
Q 007917 177 STALKE-SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAF 255 (585)
Q Consensus 177 ~~a~~~-~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l 255 (585)
+.|.++ +|||||+||.|++..+.+... .+.+..... ....++++.+++++++|++||||+|++|+|+.++++.+++
T Consensus 164 ~~a~~~~~GPV~i~iP~Dv~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l 240 (569)
T PRK08327 164 QIAMSEPKGPVYLTLPREVLAEEVPEVK-ADAGRQMAP--APPAPDPEDIARAAEMLAAAERPVIITWRAGRTAEGFASL 240 (569)
T ss_pred HHHhcCCCCCEEEECcHHHHhhhccccc-cCccccCCC--CCCCCCHHHHHHHHHHHHhCCCCEEEEecccCCcccHHHH
Confidence 999986 799999999999764321110 110000011 1112346679999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcC
Q 007917 256 IELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQP 335 (585)
Q Consensus 256 ~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~ 335 (585)
.+|||++++||++|++|||.||++||+++|.+ ++++++++|+||+||+++++..+..+ +.++.++||||.
T Consensus 241 ~~lae~l~~Pv~tt~~gkg~~~~~hp~~~G~~--------~~~~~~~aDlvl~lG~~l~~~~~~~~--~~~~~~vi~Id~ 310 (569)
T PRK08327 241 RRLAEELAIPVVEYAGEVVNYPSDHPLHLGPD--------PRADLAEADLVLVVDSDVPWIPKKIR--PDADARVIQIDV 310 (569)
T ss_pred HHHHHHhCCCEEecCCCceeCCCCCccccccc--------cchhhhhCCEEEEeCCCCCCcccccc--CCCCCeEEEEeC
Confidence 99999999999999999999999999999863 56788999999999999876544321 334568999999
Q ss_pred CceeecC--CCcccc----ccHHHHHHHHHHHhccCcc-----------chhhhhhccCCCCCC--CCCCCCCCCCHHHH
Q 007917 336 HRVTVGN--GPSLGW----VFMADFLSALAKKLRKNTT-----------ALENYRRIYVPPGIP--VKRAQNEPLRVNVL 396 (585)
Q Consensus 336 ~~~~~~~--~~~~~~----~~~~~~l~~L~~~l~~~~~-----------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 396 (585)
|+.+++. +++..+ .|++.+|++|++.+..... .|.+++......... .....+.++++.++
T Consensus 311 d~~~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 390 (569)
T PRK08327 311 DPLKSRIPLWGFPCDLCIQADTSTALDQLEERLKSLASAERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGPITPAYL 390 (569)
T ss_pred ChhhhcccccCcceeEEEecCHHHHHHHHHHHHhhcccchhhhhhhhHHHHHHHHHHhhhhhhhhhhccCCCCCcCHHHH
Confidence 9987751 122222 4899999999988754211 111111110000000 01123357999999
Q ss_pred HHHHHhhCCCCCEEEecCCccccccccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----h-
Q 007917 397 FKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----E- 471 (585)
Q Consensus 397 ~~~L~~~l~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----e- 471 (585)
+++|++.++++++++.|.+ +...+++.+++.+|+++.++|+|||++|+|+|+++|+|+++||+++|||||+ |
T Consensus 391 ~~~l~~~l~~~~~vv~~~~---~~~~~~~~~~~~~~~~~~~~gsmG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~e~ 467 (569)
T PRK08327 391 SYCLGEVADEYDAIVTEYP---FVPRQARLNKPGSYFGDGSAGGLGWALGAALGAKLATPDRLVIATVGDGSFIFGVPEA 467 (569)
T ss_pred HHHHHHhcCccceEEeccH---HHHHhcCccCCCCeeeCCCCCCCCcchHHHHHHhhcCCCCeEEEEecCcceeecCcHH
Confidence 9999999999898886643 2234556666667999999999999999999999999999999999999998 4
Q ss_pred -HHHHHHhCCCeEEEEEeCCceeeeee----ecCC-------C--CCCC-CCCCHHHHHHHhcCCCCCccEEEecCHHHH
Q 007917 472 -ISTMIRCGQRSIIFLINNGGYTIEVE----IHDG-------P--YNVI-KNWDYTGLVNAIHNGEGKCWTAKVRSEDEL 536 (585)
Q Consensus 472 -L~ta~~~~lpv~ivV~NN~~~~~~~~----~~~~-------~--~~~~-~~~d~~~la~a~G~~~~~~~~~~v~~~~eL 536 (585)
|+|++|+++|+++||+||++|++.+. ++.. . ...+ +++||.++|++||+ ++++|++.+||
T Consensus 468 ~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~-----~~~~v~~~~el 542 (569)
T PRK08327 468 AHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGG-----YGERVEDPEEL 542 (569)
T ss_pred HHHHHHHhCCCEEEEEEeCcccccchhHHhhhCcccccccccccccccCCCCCCHHHHHHhCCC-----CceEeCCHHHH
Confidence 89999999999999999999998321 2211 1 2334 67999999999999 99999999999
Q ss_pred HHHHHHhhh--cCCCCeEEEEEEcCC
Q 007917 537 TEAMKTATG--EQKDSLCFIEVFVHK 560 (585)
Q Consensus 537 ~~al~~a~~--~~~~gp~vIeV~v~~ 560 (585)
+++|+++++ .+.+||+||||.+++
T Consensus 543 ~~al~~a~~~~~~~~gp~liev~v~~ 568 (569)
T PRK08327 543 KGALRRALAAVRKGRRSAVLDVIVDR 568 (569)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEccC
Confidence 999999986 112689999999975
No 50
>PRK07586 hypothetical protein; Validated
Probab=100.00 E-value=1.6e-85 Score=715.92 Aligned_cols=488 Identities=20% Similarity=0.157 Sum_probs=390.8
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHH
Q 007917 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (585)
|+++++|++.|+++||++|||+||+++.+|+++|.+.++|++|.||||++|+|||+||||+||+ +||++|+|||++|++
T Consensus 1 ~~~~~~l~~~L~~~Gv~~vFG~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~ 80 (514)
T PRK07586 1 MNGAESLVRTLVDGGVDVCFANPGTSEMHFVAALDRVPGMRCVLGLFEGVATGAADGYARMAGKPAATLLHLGPGLANGL 80 (514)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHH
Confidence 5789999999999999999999999999999999765689999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-CC
Q 007917 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (585)
Q Consensus 106 ~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~g 184 (585)
+||++||.+++|||+|+|+.++...+++. .|..||.++|+++|||+.++.+++++++.|++||+.|.++ +|
T Consensus 81 ~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~--------~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~~G 152 (514)
T PRK07586 81 ANLHNARRARTPIVNIVGDHATYHRKYDA--------PLTSDIEALARPVSGWVRRSESAADVAADAAAAVAAARGAPGQ 152 (514)
T ss_pred HHHHHHHhcCCCEEEEecCCchhccCCCc--------ccccchhhhhccccceeeecCCHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999887655432 2345889999999999999999999999999999999996 79
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCC
Q 007917 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (585)
Q Consensus 185 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~ 264 (585)
||||+||.|++..+ .+.... +....+ ...+++..+++++++|.+||||+|++|.|+.++++.+++.+|||++++
T Consensus 153 PV~l~iP~Dv~~~~--~~~~~~-~~~~~~---~~~~~~~~v~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~l~~ 226 (514)
T PRK07586 153 VATLILPADVAWSE--GGPPAP-PPPAPA---PAAVDPAAVEAAAAALRSGEPTVLLLGGRALRERGLAAAARIAAATGA 226 (514)
T ss_pred cEEEEeccchhccc--cccccc-cCCCCC---CCCCCHHHHHHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHHCC
Confidence 99999999997632 211111 100111 112346689999999999999999999999999999999999999999
Q ss_pred CeEEcc------CCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCce
Q 007917 265 PIAIMP------SGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRV 338 (585)
Q Consensus 265 Pv~~t~------~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~ 338 (585)
||++|. +|||+||++|+.+.+ +.+++++++||+||+||+++.... ..+ .....++++.+.+..
T Consensus 227 pV~t~~~~~~~~~gkg~~~~~~~~~~~--------~~~~~~~~~aDlvl~vG~~~~~~~-~~~--~~~~~~~~~~~~~~~ 295 (514)
T PRK07586 227 RLLAETFPARMERGAGRPAVERLPYFA--------EQALAQLAGVRHLVLVGAKAPVAF-FAY--PGKPSRLVPEGCEVH 295 (514)
T ss_pred CEEecccccccccCCCCCCcccccchH--------HHHHHHHhcCCEEEEECCCCcccc-ccc--CCCccccCCCCceEE
Confidence 999864 599999988876543 456778999999999999863210 001 011112222222222
Q ss_pred eecCCCccccccHHHHHHHHHHHhccCccchhhhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEecCCccc
Q 007917 339 TVGNGPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSW 418 (585)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d~G~~~ 418 (585)
.+. ....|++.+|++|.+.++...... ..... . . ......++++.++++.|++.+|++++++.|+|++.
T Consensus 296 ~~~----~~~~d~~~~l~~L~~~l~~~~~~~-~~~~~---~--~-~~~~~~~i~~~~~~~~l~~~l~~~~ivv~d~g~~~ 364 (514)
T PRK07586 296 TLA----GPGEDAAAALEALADALGAKPAAP-PLAAP---A--R-PPLPTGALTPEAIAQVIAALLPENAIVVDESITSG 364 (514)
T ss_pred EEC----CCcccHHHHHHHHHHhhcccccch-hhhhc---c--c-cCCCCCCcCHHHHHHHHHHhCCCCeEEEeCCCcCH
Confidence 221 113488999999988775321110 11000 0 0 11124469999999999999999999999999987
Q ss_pred cccc-cccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCCcee
Q 007917 419 FNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNGGYT 493 (585)
Q Consensus 419 ~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~~~~ 493 (585)
+|.. ++....+.+|+.+.+ |+|||++|+|||+++|.|+++|||++|||||+ ||+|++|+++|+++||+||++|+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~-g~mG~~lpaaiGa~lA~p~r~Vv~i~GDGsf~m~~~EL~Ta~~~~lpv~ivV~NN~~y~ 443 (514)
T PRK07586 365 RGFFPATAGAAPHDWLTLTG-GAIGQGLPLATGAAVACPDRKVLALQGDGSAMYTIQALWTQARENLDVTTVIFANRAYA 443 (514)
T ss_pred HHHHHhccccCCCCEEccCC-cccccHHHHHHHHHHhCCCCeEEEEEechHHHhHHHHHHHHHHcCCCCEEEEEeCchhH
Confidence 7654 344445555777665 99999999999999999999999999999999 99999999999999999999999
Q ss_pred eeee---ec-C---C----CCCCC--CCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEc
Q 007917 494 IEVE---IH-D---G----PYNVI--KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFV 558 (585)
Q Consensus 494 ~~~~---~~-~---~----~~~~~--~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v 558 (585)
+.+. .+ . + .+.++ +++||.++|++||+ ++++|++++||+++|+++++ .++|+||||.+
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~V~~~~el~~al~~a~~--~~~p~liev~~ 514 (514)
T PRK07586 444 ILRGELARVGAGNPGPRALDMLDLDDPDLDWVALAEGMGV-----PARRVTTAEEFADALAAALA--EPGPHLIEAVV 514 (514)
T ss_pred HHHHHHHHhcCCCCCccccccccCCCCCCCHHHHHHHCCC-----cEEEeCCHHHHHHHHHHHHc--CCCCEEEEEEC
Confidence 8321 11 1 1 12333 46899999999999 99999999999999999996 78999999975
No 51
>PRK12474 hypothetical protein; Provisional
Probab=100.00 E-value=1.9e-85 Score=714.39 Aligned_cols=485 Identities=17% Similarity=0.145 Sum_probs=389.8
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHH
Q 007917 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (585)
Q Consensus 25 ~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (585)
.+++++++|++.|+++||++|||+||+++++|+++|.+.++|++|.||||++|+||||||||+||+ +||++|+|||++|
T Consensus 3 ~~~~~~~~l~~~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N 82 (518)
T PRK12474 3 QTMNGADSVVDTLLNCGVEVCFANPGTSEMHFVAALDRVPRMRPVLCLFEGVVTGAADGYGRIAGKPAVTLLHLGPGLAN 82 (518)
T ss_pred cCccHHHHHHHHHHHCCCCEEEECCCcchHHHHHHhhccCCceEEEecchHHHHHHHHHHHHHhCCCEEEEEccchhHhH
Confidence 468999999999999999999999999999999999765689999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-
Q 007917 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (585)
Q Consensus 104 ~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (585)
+++||++||.+++|||+|+|+.++...+.+. + |..|+..+++++|||+.++.+++++++.|+|||+.|.++
T Consensus 83 ~~~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~-----~---q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~ 154 (518)
T PRK12474 83 GLANLHNARRAASPIVNIVGDHAVEHLQYDA-----P---LTSDIDGFARPVSRWVHRSASAGAVDSDVARAVQAAQSAP 154 (518)
T ss_pred hHHHHHHHhhcCCCEEEEeccCchhhcCCCC-----c---cccCHHHhhhcccceeeecCCHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998877555431 2 234889999999999999999999999999999999997
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHh
Q 007917 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (585)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l 262 (585)
+|||||+||.|++..+.+.. ..+.+. ..+ ..++++.+++++++|.+||||+|++|+|+.++++.+++++|||++
T Consensus 155 ~GPV~l~iP~Dv~~~~~~~~-~~~~~~-~~~----~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~ 228 (518)
T PRK12474 155 GGIATLIMPADVAWNEAAYA-AQPLRG-IGP----APVAAETVERIAALLRNGKKSALLLRGSALRGAPLEAAGRIQAKT 228 (518)
T ss_pred CCcEEEEechhhhcccccCC-cCCCCC-CCC----CCCCHHHHHHHHHHHHcCCCcEEEECCccchhhHHHHHHHHHHHH
Confidence 59999999999976422111 111110 011 123456899999999999999999999999989999999999999
Q ss_pred CCCeEEc------cCCccCCCC-CCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCc--cc-cccc-ccCCCcceE
Q 007917 263 GYPIAIM------PSGKGLVPE-HHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDY--SS-VGYS-LLIKKEKAI 331 (585)
Q Consensus 263 ~~Pv~~t------~~gkg~~~~-~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~--~~-~~~~-~~~~~~~~i 331 (585)
++||++| ++|||+||+ +||++. +...+++++||+||+||++++.. .+ ..+. .+.+..+++
T Consensus 229 g~PV~~t~~~~~~~~gkg~~~~~~~~~~~---------~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~ 299 (518)
T PRK12474 229 GVRLYCDTFAPRIERGAGRVPIERIPYFH---------EQITAFLKDVEQLVLVGAKPPVSFFAYPGKPSWGAPPGCEIV 299 (518)
T ss_pred CCCEEEecCcccccCCCCCCCCcccccch---------HHHHHHHhhCCEEEEECCCCCccccccCCCccccCCCCCEEE
Confidence 9999975 469999995 667652 34667899999999999986321 11 1111 122234566
Q ss_pred EEcCCceeecCCCccccccHHHHHHHHHHHhccCccchhhhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEE
Q 007917 332 IVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVI 411 (585)
Q Consensus 332 ~id~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~ 411 (585)
+++.. +.|++.+|++|.+.++........+ ..... .....++++.+++++|++.++++++++
T Consensus 300 ~~~~~-----------~~d~~~~l~~L~~~l~~~~~~~~~~-----~~~~~--~~~~~~i~~~~~~~~l~~~l~~d~iv~ 361 (518)
T PRK12474 300 YLAQP-----------DEDLAQALQDLADAVDAPAEPAART-----PLALP--ALPKGALNSLGVAQLIAHRTPDQAIYA 361 (518)
T ss_pred EECCC-----------CcCHHHHHHHHHHhccccccccccc-----ccccc--CCCCCCcCHHHHHHHHHHHCCCCeEEE
Confidence 66531 2478899999988765321110000 00000 112346999999999999999999999
Q ss_pred ecCCccccccc-cccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEE
Q 007917 412 AETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFL 486 (585)
Q Consensus 412 ~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV 486 (585)
.|+|++..|.. +++..++.+++.+. +|+|||++|+|||+++|+|+|+||+++|||||+ ||+|++||++|+++||
T Consensus 362 ~d~g~~~~~~~~~~~~~~p~~~~~~~-~gsmG~glpaAiGa~lA~p~r~vv~i~GDG~f~m~~qEL~Ta~r~~lpv~iiV 440 (518)
T PRK12474 362 DEALTSGLFFDMSYDRARPHTHLPLT-GGSIGQGLPLAAGAAVAAPDRKVVCPQGDGGAAYTMQALWTMARENLDVTVVI 440 (518)
T ss_pred ECCCcCHHHHHHhhcccCCCCEEccC-CCccCccHHHHHHHHHHCCCCcEEEEEcCchhcchHHHHHHHHHHCCCcEEEE
Confidence 99999876654 34444555577654 499999999999999999999999999999999 9999999999999999
Q ss_pred EeCCceeeeee---ec----CC----CCCCC--CCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEE
Q 007917 487 INNGGYTIEVE---IH----DG----PYNVI--KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCF 553 (585)
Q Consensus 487 ~NN~~~~~~~~---~~----~~----~~~~~--~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~v 553 (585)
+||++|++.+. .+ .+ .+.++ +++||.++|++||+ ++++|++++||.++|+++++ .++|+|
T Consensus 441 ~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~rv~~~~eL~~al~~a~~--~~~p~l 513 (518)
T PRK12474 441 FANRSYAILNGELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGLGV-----EASRATTAEEFSAQYAAAMA--QRGPRL 513 (518)
T ss_pred EcCCcchHHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHc--CCCCEE
Confidence 99999998321 11 11 12333 35899999999999 99999999999999999996 789999
Q ss_pred EEEEc
Q 007917 554 IEVFV 558 (585)
Q Consensus 554 IeV~v 558 (585)
|||.+
T Consensus 514 iev~~ 518 (518)
T PRK12474 514 IEAMI 518 (518)
T ss_pred EEEEC
Confidence 99975
No 52
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=100.00 E-value=1.5e-85 Score=717.77 Aligned_cols=504 Identities=22% Similarity=0.256 Sum_probs=412.2
Q ss_pred CCcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchH
Q 007917 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGL 102 (585)
Q Consensus 24 ~~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~ 102 (585)
+..++++++|++.|+++||++|||+||+++.+|++++.+ +|++|.||||++|+|||+||||+||+ +||++|+|||++
T Consensus 9 ~~~~~~a~~l~~~L~~~GV~~vFgiPG~~~~~l~dal~~--~i~~i~~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~ 86 (530)
T PRK07092 9 AAMTTVRDATIDLLRRFGITTVFGNPGSTELPFLRDFPD--DFRYVLGLQEAVVVGMADGYAQATGNAAFVNLHSAAGVG 86 (530)
T ss_pred cccCcHHHHHHHHHHHcCCCEEEeCCCCcchHHHHHHhh--cCCEEEEccHHHHHHHHHHHHHHhCCceEEEeccCchHH
Confidence 345789999999999999999999999999999999963 69999999999999999999999999 999999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc
Q 007917 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (585)
Q Consensus 103 n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~ 182 (585)
|+++||++|+.+++|||+|+|+.+....+++.+ + +..||..+|+++|||+.++.+++++++.|++|++.|.++
T Consensus 87 N~~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~-----~--~~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~ 159 (530)
T PRK07092 87 NAMGNLFTAFKNHTPLVITAGQQARSILPFEPF-----L--AAVQAAELPKPYVKWSIEPARAEDVPAAIARAYHIAMQP 159 (530)
T ss_pred HHHHHHHHHhhcCCCEEEEecCCcccccCccch-----h--cccCHHHhhcccccceeecCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999876665431 1 234778999999999999999999999999999999997
Q ss_pred -CCcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHH
Q 007917 183 -SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (585)
Q Consensus 183 -~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~ 261 (585)
+|||||+||.|++..+ ..... .....+ ...+++..+++++++|.+||||+|++|.|++++++.++|++|||+
T Consensus 160 ~~GPv~l~iP~d~~~~~--~~~~~--~~~~~~---~~~~~~~~~~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~ 232 (530)
T PRK07092 160 PRGPVFVSIPYDDWDQP--AEPLP--ARTVSS---AVRPDPAALARLGDALDAARRPALVVGPAVDRAGAWDDAVRLAER 232 (530)
T ss_pred CCCcEEEEccHHHhhCc--ccccc--cCCCCC---CCCCCHHHHHHHHHHHHcCCCcEEEECCCcchhhhHHHHHHHHHH
Confidence 6999999999997642 21111 100111 112345678999999999999999999999988899999999999
Q ss_pred hCCCeEEccC-CccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCccccccc-ccCCCcceEEEcCCcee
Q 007917 262 TGYPIAIMPS-GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYS-LLIKKEKAIIVQPHRVT 339 (585)
Q Consensus 262 l~~Pv~~t~~-gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~-~~~~~~~~i~id~~~~~ 339 (585)
+|+||++|++ +||+||++||+++|.+ |. +.....+++++||+||+||+++.+..+..|. .+.++.++||||.|+..
T Consensus 233 lg~pV~~t~~~~kg~~~~~hp~~~G~~-g~-~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~ 310 (530)
T PRK07092 233 HRAPVWVAPMSGRCSFPEDHPLFAGFL-PA-SREKISALLDGHDLVLVIGAPVFTYHVEGPGPHLPEGAELVQLTDDPGE 310 (530)
T ss_pred HCCcEEEecCCCcCcCCCCCccccCcC-Cc-cHHHHHHHHhhCCEEEEECCcccccccCCccccCCCCCeEEEEeCChHH
Confidence 9999999876 7999999999999986 33 3456778999999999999975444443333 33445689999999987
Q ss_pred ecCCCccc---cccHHHHHHHHHHHhccCccchhhhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEecCCc
Q 007917 340 VGNGPSLG---WVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGD 416 (585)
Q Consensus 340 ~~~~~~~~---~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d~G~ 416 (585)
++ ..... ..|++.+|++|.+.++........+++. . ........++++.++++.|++.++++++++.|+|+
T Consensus 311 ~~-~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~--~---~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~g~ 384 (530)
T PRK07092 311 AA-WAPMGDAIVGDIRLALRDLLALLPPSARPAPPARPM--P---PPAPAPGEPLSVAFVLQTLAALRPADAIVVEEAPS 384 (530)
T ss_pred hc-CCCCCCcccCCHHHHHHHHHHhhccccccchhhhhc--c---ccccCCCCCcCHHHHHHHHHHhCCCCeEEEeCCCc
Confidence 65 22111 2388999999999886432111111110 0 00112345799999999999999999999999998
Q ss_pred cccccc-cccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCCc
Q 007917 417 SWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNGG 491 (585)
Q Consensus 417 ~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~~ 491 (585)
+..|.. +++..++.+++.+ .+|+|||++|+|+|++++.|+++|||++|||+|+ ||+|++++++|+++||+||++
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~-~~g~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~~eL~ta~~~~lp~~~vv~NN~~ 463 (530)
T PRK07092 385 TRPAMQEHLPMRRQGSFYTM-ASGGLGYGLPAAVGVALAQPGRRVIGLIGDGSAMYSIQALWSAAQLKLPVTFVILNNGR 463 (530)
T ss_pred cHHHHHHhcCcCCCCceEcc-CCCcccchHHHHHHHHHhCCCCeEEEEEeCchHhhhHHHHHHHHHhCCCcEEEEEeChH
Confidence 876643 4555555557754 4599999999999999999999999999999999 999999999999999999999
Q ss_pred eeeeeee----c-CC-CCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcC
Q 007917 492 YTIEVEI----H-DG-PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVH 559 (585)
Q Consensus 492 ~~~~~~~----~-~~-~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~ 559 (585)
|++.+.. + +. .+.+++++||.++|++||+ ++++|++.+||+++|+++++ .++|+||||.+|
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~-----~~~~v~~~~~l~~al~~a~~--~~~p~liev~~d 530 (530)
T PRK07092 464 YGALRWFAPVFGVRDVPGLDLPGLDFVALARGYGC-----EAVRVSDAAELADALARALA--ADGPVLVEVEVA 530 (530)
T ss_pred HHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEcC
Confidence 9983211 1 11 3445678999999999999 99999999999999999986 789999999986
No 53
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=100.00 E-value=9.6e-86 Score=726.15 Aligned_cols=526 Identities=17% Similarity=0.157 Sum_probs=411.1
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHH
Q 007917 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (585)
++++++|++.|+++||++|||+||+++.+|++++.++++|++|.+|||++|+|||+||+|+||+ +||++|+|||++|++
T Consensus 9 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~~l~~~~~i~~v~~~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~l 88 (568)
T PRK07449 9 TLWAAVILEELTRLGVRHVVIAPGSRSTPLTLAAAEHPRLRLHTHFDERSAGFLALGLAKASKRPVAVIVTSGTAVANLY 88 (568)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCcEEEeecCcccHHHHHHHHHHhhCCCEEEEECCccHHHhhh
Confidence 7889999999999999999999999999999999766689999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCc--chhHHHHHHHHHH---hh
Q 007917 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNL--GDAHELIDTAIST---AL 180 (585)
Q Consensus 106 ~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~--~~~~~~l~~A~~~---a~ 180 (585)
+||++||.+++|||+|+|+++....+++. .|..||.++++++|++..+..+. +.++..++++++. |.
T Consensus 89 ~~i~~A~~~~~Pvl~IsG~~~~~~~~~~~--------~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~ 160 (568)
T PRK07449 89 PAVIEAGLTGVPLIVLTADRPPELRDCGA--------NQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQ 160 (568)
T ss_pred HHHHHHhhcCCcEEEEECCCCHHHhcCCC--------CceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999987665542 24568999999999777766544 3345445555554 55
Q ss_pred hc-CCcEEEEecCCCCCCCCCCCCC-CC--CCccC--CC-CCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHH
Q 007917 181 KE-SKPVYISISCNLPGIPHPTFAR-DP--VPFFL--AP-KVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQK 253 (585)
Q Consensus 181 ~~-~gPV~i~iP~dv~~~~~~~~~~-~~--~~~~~--~~-~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~ 253 (585)
++ +|||||+||.|++..+...... .+ .+... .+ ......+++..+++++++|.+ |||+||+|.|+++ +.+
T Consensus 161 ~~~~GPV~i~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-krPvii~G~g~~~--~~~ 237 (568)
T PRK07449 161 TLQAGPVHINCPFREPLYPDDDDDTGSPWLAPLGDWWQDDWLRQTVQPEVTSQRDWDIWRQ-KRGVVIAGRLSAE--EGQ 237 (568)
T ss_pred CCCCCCEEEeCCCCCCCCCCCcccccccccccccccccccccccccCccccchhhhhhhcc-CCeEEEECCCChH--HHH
Confidence 55 7999999999986432110000 00 01000 00 000011234568899999998 9999999999986 349
Q ss_pred HHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEE
Q 007917 254 AFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIV 333 (585)
Q Consensus 254 ~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~i 333 (585)
++.+|||++|+||++|++||+.||++||+++|++.+..+++.+.+.+++||+||+||+++++..+..|.... ..++|||
T Consensus 238 ~l~~lae~~g~PV~tt~~~~~~~~~~hp~~~G~~g~~~~~~~~~~~l~~aD~vl~vG~~l~~~~~~~~~~~~-~~~~i~i 316 (568)
T PRK07449 238 AIAALAQLLGWPLLADPLSPRNYAPLHPQPIPCYDLWLRNPKAAEELLQPDIVIQFGSPPTSKRLLQWLADC-EPEYWVV 316 (568)
T ss_pred HHHHHHHHCCCeEEEecCCCCCCCCCCccccchHHHHhcCchhhhhcCCCCEEEEeCCCCCchhHHHHHhcC-CCCEEEE
Confidence 999999999999999999999999999999998754446667788999999999999999766555553222 2389999
Q ss_pred cCCceeecCCCccc----cccHHHHHHHHHHHhccCccchhhhhhccC--CCCCCCCCCCCCCCCHHHHHHHHHhhCCCC
Q 007917 334 QPHRVTVGNGPSLG----WVFMADFLSALAKKLRKNTTALENYRRIYV--PPGIPVKRAQNEPLRVNVLFKHIQDMLSGD 407 (585)
Q Consensus 334 d~~~~~~~~~~~~~----~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 407 (585)
|.|+..++ ..+.. ..|++.+|++ ..... ...+...+..... ..... ......++++.++++.|++.+|++
T Consensus 317 d~d~~~~~-~~~~~~~~i~~d~~~~l~~-~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~l~~~l~~~ 392 (568)
T PRK07449 317 DPGPGRLD-PAHHATRRLTASVATWLEA-HPAEK-RKPWLQEWQALNEKAREAVR-EQLAEDTFTEAKVAAALADLLPEG 392 (568)
T ss_pred CCCCCcCC-CCCCceEEEEEcHHHHHHh-ccccc-chHHHHHHHHHHHHHHHHHH-HHhccCCccHHHHHHHHHHhCCCC
Confidence 99998886 32222 2478889888 32111 1111111111000 00000 001234699999999999999999
Q ss_pred CEEEecCCccccccc-cccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCe
Q 007917 408 TAVIAETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRS 482 (585)
Q Consensus 408 ~ii~~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv 482 (585)
++++.|.|++.++.. ++..+.+.+++.+.++++|||++|+|||+++| |+++||+++|||||+ ||+|++|+++|+
T Consensus 393 ~iv~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~lpaaiGaala-~~~~vv~i~GDGsf~~~~~eL~Ta~r~~l~i 471 (568)
T PRK07449 393 GQLFVGNSLPVRDVDAFGQLPDGYPVYSNRGASGIDGLLSTAAGVARA-SAKPTVALIGDLSFLHDLNGLLLLKQVPAPL 471 (568)
T ss_pred CeEEEECcHHHHHHHHccCcCCCceEEecCCccchhhHHHHHHHHHhc-CCCCEEEEechHHhhcCcHHHHhhcccCCCe
Confidence 999999998876653 44555556688889999999999999999999 899999999999999 999999999999
Q ss_pred EEEEEeCCceeeeeeec---C----C-CCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEE
Q 007917 483 IIFLINNGGYTIEVEIH---D----G-PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFI 554 (585)
Q Consensus 483 ~ivV~NN~~~~~~~~~~---~----~-~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vI 554 (585)
++||+||++|++.+.+. . + .+....++||+++|++||+ ++++|++++||+++|+++++ .++|+||
T Consensus 472 ~ivVlNN~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~-----~~~~V~~~~eL~~al~~a~~--~~~p~lI 544 (568)
T PRK07449 472 TIVVVNNNGGGIFSLLPQPEEEPVFERFFGTPHGVDFAHAAAMYGL-----EYHRPETWAELEEALADALP--TPGLTVI 544 (568)
T ss_pred EEEEEECCCCccccCCCCCCCcchhhHhhcCCCCCCHHHHHHHcCC-----CccCCCCHHHHHHHHHHHhc--CCCCEEE
Confidence 99999999999743221 1 1 2233467999999999999 99999999999999999986 7899999
Q ss_pred EEEcCCCCChHHHHHHHHhhhh
Q 007917 555 EVFVHKDDTSKELLEWGSRVSA 576 (585)
Q Consensus 555 eV~v~~~~~~~~~~~~~~~~~~ 576 (585)
||.+++++.++.++.+.+.++.
T Consensus 545 ev~id~~~~~~~~~~~~~~~~~ 566 (568)
T PRK07449 545 EVKTNRSQGAQLLQALLAQVSH 566 (568)
T ss_pred EEeCChhhhHHHHHHHHHHhhc
Confidence 9999999999999888876543
No 54
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=9.4e-85 Score=647.10 Aligned_cols=517 Identities=22% Similarity=0.287 Sum_probs=426.5
Q ss_pred CCcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchH
Q 007917 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGL 102 (585)
Q Consensus 24 ~~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~ 102 (585)
.+.+.+++.+++.|+.+||++|||+-|.++.+|..+.++. +||||.+|||++|+|+|++|++.||+ |||.+++|||.+
T Consensus 11 ~~~~~g~~~vA~~Lk~~gVe~iFgiVGipV~el~~aaqal-GIk~I~~RnEqaA~yAA~A~gyLt~kpGV~lVvsGPGl~ 89 (571)
T KOG1185|consen 11 ASSRHGGELVAAVLKAQGVEYIFGIVGIPVIELAVAAQAL-GIKFIGTRNEQAAVYAASAYGYLTGKPGVLLVVSGPGLT 89 (571)
T ss_pred cccccHHHHHHHHHHHcCceEEEEEeccchHHHHHHHHHc-CCeEeecccHHHHHHHHHHhhhhcCCCeEEEEecCChHH
Confidence 4568999999999999999999999999999999999875 99999999999999999999999999 999999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc
Q 007917 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (585)
Q Consensus 103 n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~ 182 (585)
|+++|++||+.+++|||+|.|..++.+.+++. + |..||+++++|+|||+.+++++++++..+++|++.|+++
T Consensus 90 hal~gv~NA~~n~wPll~IgGsa~~~~~~rGa-----f---Qe~dQvel~rp~~K~~~r~~~~~~I~~~i~kA~r~a~~G 161 (571)
T KOG1185|consen 90 HALAGVANAQMNCWPLLLIGGSASTLLENRGA-----F---QELDQVELFRPLCKFVARPTSVRDIPPTIRKAVRAAMSG 161 (571)
T ss_pred HHHHHhhhhhhccCcEEEEecccchhhhcccc-----c---ccccHHhhhhhhhhhccCCCChhhccHHHHHHHHHHhcC
Confidence 99999999999999999999999998888762 3 356999999999999999999999999999999999997
Q ss_pred -CCcEEEEecCCCCCCCCCCCCC----CCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHH
Q 007917 183 -SKPVYISISCNLPGIPHPTFAR----DPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIE 257 (585)
Q Consensus 183 -~gPV~i~iP~dv~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~ 257 (585)
|||||+++|.|+.......+.. .+.+..+.|.. +.+++.++++++++|++||||++|+|.|+.++.+.++|++
T Consensus 162 ~PG~~yvD~P~d~v~~~~~~e~~~~~~~p~~~~p~P~i--~~p~~s~i~~av~llk~AKrPLlvvGkgAa~~~ae~~l~~ 239 (571)
T KOG1185|consen 162 RPGPVYVDLPADVVLPSKMVEKEIDVSEPQPPIPLPPI--PGPPPSQIQKAVQLLKSAKRPLLVVGKGAAYAPAEDQLRK 239 (571)
T ss_pred CCCceEEecccceeeeecccccccccCCCCCCCCCCCC--CCCCHHHHHHHHHHHHhcCCcEEEEecccccCccHHHHHH
Confidence 8999999999954322121110 11111111111 1345678999999999999999999999999889999999
Q ss_pred HHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccc-cCCCcceEEEcCC
Q 007917 258 LADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSL-LIKKEKAIIVQPH 336 (585)
Q Consensus 258 lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~-~~~~~~~i~id~~ 336 (585)
|.|.+|+|++.|+||||++|++||++++. ....+|++||+||++|+++++...++... +.++.|+||||.+
T Consensus 240 ~Ve~~glPflptpMgKGll~d~hPl~v~~--------aRS~ALk~ADvvll~GarlnwiLhfG~~Pk~~kd~KfIqvd~n 311 (571)
T KOG1185|consen 240 FVETTGLPFLPTPMGKGLLPDNHPLNVSS--------ARSLALKKADVVLLAGARLNWILHFGLPPKWSKDVKFIQVDIN 311 (571)
T ss_pred HHHhcCCCcccCcccccCCCCCCchhhhH--------HHHHHHhhCCEEEEecceeeEEEecCCCCccCCCceEEEEeCC
Confidence 99999999999999999999999999864 45678999999999999999988877654 4467899999999
Q ss_pred ceeecCCCcccc----ccHHHHHHHHHHHhccCccch---hhh-hhccCC----C--CCCCCCCCCCCCCHHHHHHHHHh
Q 007917 337 RVTVGNGPSLGW----VFMADFLSALAKKLRKNTTAL---ENY-RRIYVP----P--GIPVKRAQNEPLRVNVLFKHIQD 402 (585)
Q Consensus 337 ~~~~~~~~~~~~----~~~~~~l~~L~~~l~~~~~~~---~~~-~~~~~~----~--~~~~~~~~~~~~~~~~~~~~L~~ 402 (585)
++++++....++ .|++.++.+|.+.++..++.| ..| +++++. + ..........++++..+++.+++
T Consensus 312 ~Eel~~n~~k~~v~i~gDig~~~~~L~e~l~~~~~~~~~s~~w~k~Lrek~~~ne~~~~~~~~~~~~pLN~~~~~~~vre 391 (571)
T KOG1185|consen 312 PEELGNNFVKPDVAIQGDIGLFVLQLVEELQDQPWTWGPSTDWVKELREKDKQNEAAVEEKAAKKSTPLNYYQVLQTVRE 391 (571)
T ss_pred HHHHhcccCCCCceeeecHHHHHHHHHHHhcCCCcccCCchhHHHHHHHHHHhhHHHHHHHhhccCCCCcHHHHHHHHHH
Confidence 999973212233 489999999999998754311 122 112110 0 00112234457999999999999
Q ss_pred hCC-CCCEEEecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHH
Q 007917 403 MLS-GDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMI 476 (585)
Q Consensus 403 ~l~-~~~ii~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~ 476 (585)
.|| ++.|+|+|.++..-.. ..+....+++.+..+.||+||.|+++||++|++.|+++|+|+-||++|. |++|++
T Consensus 392 ~L~~~d~ilVsEGantmdigr~~l~~~~Pr~rLDaGtfgTMGVG~Gfalaaa~~~P~~~V~~veGDsaFGfSaME~ET~v 471 (571)
T KOG1185|consen 392 LLPNDDTILVSEGANTMDIGRTLLPPRGPRRRLDAGTFGTMGVGLGFALAAALAAPDRKVVCVEGDSAFGFSAMELETFV 471 (571)
T ss_pred hcCCCCcEEEecCCcchhhhhhhccCCCcccccCCccccccccchhHHHHHHhhCCCCeEEEEecCcccCcchhhHHHHH
Confidence 999 8899999988876322 2233333455899999999999999999999999999999999999998 999999
Q ss_pred HhCCCeEEEEEeCCc-eeee----eeecCC-------CCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhh
Q 007917 477 RCGQRSIIFLINNGG-YTIE----VEIHDG-------PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTAT 544 (585)
Q Consensus 477 ~~~lpv~ivV~NN~~-~~~~----~~~~~~-------~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~ 544 (585)
||+||+++||+||+| ||.. .++..+ +...+.+.+|.+++++||. +++.|++++||.++++++.
T Consensus 472 R~~Lpvv~vV~NN~Giyg~d~~~~~~I~e~~~~~~~p~~~l~~~~rY~~v~ka~G~-----kG~~v~t~~el~~~l~~a~ 546 (571)
T KOG1185|consen 472 RYKLPVVIVVGNNNGIYGLDDDGWKQISEQDPTLDLPPTALLANTRYDKVAKAFGG-----KGYFVSTVEELLAALQQAC 546 (571)
T ss_pred HhcCCeEEEEecCCcccccCcccHHHHhhcCcccCCCcccccccccHHHHHHHcCC-----CceeeCCHHHHHHHHHHHH
Confidence 999999999996654 7761 112111 1233478999999999999 9999999999999999999
Q ss_pred hcCCCCeEEEEEEcCCCCChH
Q 007917 545 GEQKDSLCFIEVFVHKDDTSK 565 (585)
Q Consensus 545 ~~~~~gp~vIeV~v~~~~~~~ 565 (585)
+ .+++|+||+|.+++.+..+
T Consensus 547 q-~~~~psvINVlI~p~~~rk 566 (571)
T KOG1185|consen 547 Q-DTDKPSVINVLIGPTAFRK 566 (571)
T ss_pred h-cCCCCeEEEEEeccccccc
Confidence 5 4569999999999987643
No 55
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=1.3e-84 Score=633.76 Aligned_cols=523 Identities=19% Similarity=0.230 Sum_probs=435.9
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (585)
.++|+|+++++|.++||++|||+||+.++|++|++.+++.+++|+-|||++|+|||.||||++|+ |||++|+|||++|.
T Consensus 90 g~tGg~If~emm~rqnV~tVFgYPGGAilpv~dAi~rS~~f~fvLPrHEQgaghaAegYaR~sgKPGvvlvTSGPGATNv 169 (675)
T KOG4166|consen 90 GRTGGDIFVEMMERQNVETVFGYPGGAILPVHDAITRSSSFRFVLPRHEQGAGHAAEGYARSSGKPGVVLVTSGPGATNV 169 (675)
T ss_pred CCchhHHHHHHHHhcCCceEeecCCcceeehHhhhhcCccccccccccccccchhhhhhhhhcCCCcEEEEecCCCcccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-C
Q 007917 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (585)
Q Consensus 105 ~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (585)
++++++|+.|++||+++|||.|+...|++ .+| ..|.+.+-+++|||.+.+.+.+++|..|++||.+|.++ |
T Consensus 170 vtp~ADAlaDg~PlVvftGQVptsaIGtD-----AFQ---EadiVgisRScTKwNvmVkdVedlPrrI~EAFeiATSGRP 241 (675)
T KOG4166|consen 170 VTPLADALADGVPLVVFTGQVPTSAIGTD-----AFQ---EADIVGISRSCTKWNVMVKDVEDLPRRIEEAFEIATSGRP 241 (675)
T ss_pred cchhhHHhhcCCcEEEEecccchhhcccc-----hhc---cCCeeeeeeccceeheeeecHHHhhHHHHHHhhhhccCCC
Confidence 99999999999999999999999988886 343 23567899999999999999999999999999999997 7
Q ss_pred CcEEEEecCCCCCC--CCCCCCCCCCCccCCCCCCChhhHH---HHHHHHHHHHHhcCCCEEEeCcccchh-chHHHHHH
Q 007917 184 KPVYISISCNLPGI--PHPTFARDPVPFFLAPKVSNQLGLE---AAVEATADFLNKAVKPVLVGGPNIRVA-KAQKAFIE 257 (585)
Q Consensus 184 gPV~i~iP~dv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~a~rpvIi~G~g~~~~-~a~~~l~~ 257 (585)
|||.+++|.|+... ..|.+.....|..........++++ ..+++++++|+.+|+||+++|+|+..+ +....|.+
T Consensus 242 GPVLVDlPKDvta~~l~~pip~~~~lPsn~~m~~~~~~~~~~v~~~i~~~a~Li~laKKPVlyvG~G~Ln~~d~p~lL~~ 321 (675)
T KOG4166|consen 242 GPVLVDLPKDVTAQLLIPPIPQAMRLPSNAYMSRMPKPPEDFVMSHIEQIARLISLAKKPVLYVGGGCLNSSDGPRLLGR 321 (675)
T ss_pred CCeEeeCcHHHHHHHhcCCchhhhcCCchhhHhhCCCCchhhHHHHHHHHHHHHHhccCceEEeCcccccCCcchHHHHH
Confidence 99999999999652 1111111111111000000111222 578999999999999999999999874 56789999
Q ss_pred HHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcc--------
Q 007917 258 LADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEK-------- 329 (585)
Q Consensus 258 lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~-------- 329 (585)
|.|+++|||.+|.+|-|.++.++++.+.++ |..|.-+++.+++++|+||++|.+|+++.|+..+.|.+.++
T Consensus 322 fser~qIPVtttL~GLGs~d~~d~lSLhML-GMHG~~yAN~Avq~aDLilA~GvRFDDRVTGn~s~FAp~Ar~aaae~rg 400 (675)
T KOG4166|consen 322 FSERTQIPVTTTLMGLGSYDCDDELSLHML-GMHGTVYANYAVQHADLILAFGVRFDDRVTGNLSAFAPRARRAAAEGRG 400 (675)
T ss_pred HHHhhcCcceehhhcccCcCCCCchhhhhh-cccccceehhhhhccceeEEecceeccccccchhhhChhhhhhhhcccC
Confidence 999999999999999999999999998885 77788899999999999999999999999999888877666
Q ss_pred -eEEEcCCceeecCCCccc----cccHHHHHHHHHHHhccCcc----ch----hhhhhccCCCCCCCCCCCCCCCCHHHH
Q 007917 330 -AIIVQPHRVTVGNGPSLG----WVFMADFLSALAKKLRKNTT----AL----ENYRRIYVPPGIPVKRAQNEPLRVNVL 396 (585)
Q Consensus 330 -~i~id~~~~~~~~~~~~~----~~~~~~~l~~L~~~l~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (585)
+||+|+++..+| +...+ +.|+...|..+...++.... .| ..|++...-. -....++..+.|+++
T Consensus 401 gIiHfdispknIg-Kvvqp~~aveGDv~~~L~~m~s~~kn~~~~~r~dW~~qin~wK~~fP~s--f~~~tpGe~ikPQ~v 477 (675)
T KOG4166|consen 401 GIIHFDISPKNIG-KVVQPHVAVEGDVKLALQGMNSVLKNRAEELRLDWRNQINVWKQKFPLS--FKEETPGEAIKPQYV 477 (675)
T ss_pred ceEEEecCHHHhC-cccCcceeeeccHHHHHHHHHhHhhcccchhhhhHHHHHHHHHHhCCee--eeccCCccccChHHH
Confidence 999999999997 43332 34788888877766554322 11 1233221100 012345567999999
Q ss_pred HHHHHhhCCC---CCEEEecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH--
Q 007917 397 FKHIQDMLSG---DTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ-- 470 (585)
Q Consensus 397 ~~~L~~~l~~---~~ii~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~-- 470 (585)
++.|++...+ +.||.+.+|.+.+|+ ++++..++.+|++++|.|+||||||+||||++|+|+.-||-+.||+||.
T Consensus 478 Ik~Ldk~t~d~~~kviitTGVGqHQMWAAqfy~w~kP~~~~tSGGLGtMGfGLPAAIGAsVA~P~~iViDIDGDaSF~Mt 557 (675)
T KOG4166|consen 478 IKVLDKLTDDTGRKVIITTGVGQHQMWAAQFYNWKKPRQWLTSGGLGTMGFGLPAAIGASVANPDAIVIDIDGDASFIMT 557 (675)
T ss_pred HHHHHHhccCcCceEEEeccccHHHHHHHHHhcccCccceeecCCccccccCcchhhcccccCcccEEEeccCCceeeee
Confidence 9999998765 778889999999886 4455555666999999999999999999999999999999999999998
Q ss_pred --hHHHHHHhCCCeEEEEEeCCceeee----eeecCCCCCC--CCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHH
Q 007917 471 --EISTMIRCGQRSIIFLINNGGYTIE----VEIHDGPYNV--IKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKT 542 (585)
Q Consensus 471 --eL~ta~~~~lpv~ivV~NN~~~~~~----~~~~~~~~~~--~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~ 542 (585)
||.|+.+.++|+.|+|+||...||. ..+|...|.- -.++||.++|+++|+ ++.||++.+||++.+++
T Consensus 558 ~~ELat~rq~~~PVKiLiLNNeeqGMVtQWq~lFYe~rysHThQ~nPnf~klA~AmGi-----kalRV~K~edL~~k~ke 632 (675)
T KOG4166|consen 558 VQELATIRQENLPVKILILNNEEQGMVTQWQDLFYEARYSHTHQENPNFLKLAAAMGI-----KALRVTKKEDLREKIKE 632 (675)
T ss_pred hHhhhhhhhcCCceEEEEecchhhhhHHHHHHHHHHhhhccccccCccHHHHHHhcCC-----chheeehHHHHHHHHHH
Confidence 9999999999999999999999982 2233333322 247999999999999 99999999999999999
Q ss_pred hhhcCCCCeEEEEEEcCCCCChHHH
Q 007917 543 ATGEQKDSLCFIEVFVHKDDTSKEL 567 (585)
Q Consensus 543 a~~~~~~gp~vIeV~v~~~~~~~~~ 567 (585)
.+. .+||+|+||.++..+..-+|
T Consensus 633 fls--TkGPvLleV~v~~kehVlPm 655 (675)
T KOG4166|consen 633 FLS--TKGPVLLEVIVPHKEHVLPM 655 (675)
T ss_pred HhC--CCCCeEEEEEccCccceeee
Confidence 996 89999999999988776554
No 56
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=100.00 E-value=1e-76 Score=711.12 Aligned_cols=530 Identities=16% Similarity=0.143 Sum_probs=406.1
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHH
Q 007917 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (585)
..++++|++.|+++||++|||+||++++||++++.+.++|++|.++||++|+|||+||||+||+ |||++|+|||++|++
T Consensus 301 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~pL~dAl~~~~~i~~i~~rhErsAafmAdGyAR~TgkpgV~i~TsGPG~tN~l 380 (1655)
T PLN02980 301 AVWASLIIEECTRLGLTYFCVAPGSRSSPLAIAASNHPLTTCIACFDERSLAFHALGYARGSLKPAVVITSSGTAVSNLL 380 (1655)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHhCCCCeEEeccCcchHHHHHHHHHHHhCCCEEEEEeCcHHHHHHH
Confidence 4599999999999999999999999999999999766689999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchh------HHHHHHHHHHh
Q 007917 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDA------HELIDTAISTA 179 (585)
Q Consensus 106 ~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~------~~~l~~A~~~a 179 (585)
+||++|+.+++|||+||||+|....+++. .|..||..+|+++|||+.++.+++++ ++.+++|++.|
T Consensus 381 ~av~eA~~d~vPlLvItgd~p~~~~~~ga--------~Q~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A 452 (1655)
T PLN02980 381 PAVVEASQDFVPLLLLTADRPPELQDAGA--------NQAINQVNHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWA 452 (1655)
T ss_pred HHHHHHhhcCCCEEEEeCCCCHHHhcCCC--------CcccchhhHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999988766652 34579999999999999999999984 58999999999
Q ss_pred hhc-CCcEEEEecCCCCCCCCCCCC------------CCCCCcc-CC--CCCCChhhHHHHHHHHHHHHHhcCCCEEEeC
Q 007917 180 LKE-SKPVYISISCNLPGIPHPTFA------------RDPVPFF-LA--PKVSNQLGLEAAVEATADFLNKAVKPVLVGG 243 (585)
Q Consensus 180 ~~~-~gPV~i~iP~dv~~~~~~~~~------------~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G 243 (585)
.++ ||||||+||.|.+........ ....+.. .. +......+.+..+++++++|.+||||+||+|
T Consensus 453 ~s~rpGPVhL~iP~~~pld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkRPvIvaG 532 (1655)
T PLN02980 453 TSSPCGPVHINCPFREPLDGSPTNWMSSCLKGLDMWMSNAEPFTKYIQMQSSKADGDTTGQITEVLEVIQEAKRGLLLIG 532 (1655)
T ss_pred hCCCCCCEEEECccCCccccccccccccccccchhcccCCCccccccccccccccccchhhHHHHHHHHHhCCCcEEEEc
Confidence 997 699999999764321110000 0000000 00 0000011245678999999999999999999
Q ss_pred cccchhchHHHHHHHHHHhCCCeEEccCC-c------cCCCC--CCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccC
Q 007917 244 PNIRVAKAQKAFIELADATGYPIAIMPSG-K------GLVPE--HHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFN 314 (585)
Q Consensus 244 ~g~~~~~a~~~l~~lae~l~~Pv~~t~~g-k------g~~~~--~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~ 314 (585)
+|+..+++. ++.+|||+++|||++|+++ + |+||+ +||+++|.+ |..........+.++|+||+||++++
T Consensus 533 ~G~~~~~a~-~~~~LAe~l~~PV~tt~~sg~~~~~~~g~ipe~~~~pl~~g~~-g~~~~~~~~~~~~~aDlVl~iG~rl~ 610 (1655)
T PLN02980 533 AIHTEDDIW-AALLLAKHLMWPVVADILSGLRLRKLFKSFPEFELNILFVDHL-DHALLSDSVRNWIQFDVVIQIGSRIT 610 (1655)
T ss_pred CCCchHHHH-HHHHHHHhCCCeEEEeCCCCCCCCccccccccccccccccchH-HHHhCchhhhccCCCCEEEEeCCccc
Confidence 998776555 4589999999999999975 4 99999 899999986 43111224556789999999999987
Q ss_pred Cc-ccccccccCCCcceEEEcCCceeecCCCccc----cccHHHHHHHHHHHhccCc-cch-hhhhhccCC--CCCCCCC
Q 007917 315 DY-SSVGYSLLIKKEKAIIVQPHRVTVGNGPSLG----WVFMADFLSALAKKLRKNT-TAL-ENYRRIYVP--PGIPVKR 385 (585)
Q Consensus 315 ~~-~~~~~~~~~~~~~~i~id~~~~~~~~~~~~~----~~~~~~~l~~L~~~l~~~~-~~~-~~~~~~~~~--~~~~~~~ 385 (585)
+. .+..+....+ .++||||+|+..++ ..+.. ..|++.++++|.+...... ..| ..+...... .......
T Consensus 611 s~~~t~~~~~~~~-~~~I~ID~d~~~i~-~~~~~~~~i~~D~~~~l~~L~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 688 (1655)
T PLN02980 611 SKRVSQMLEKCFP-FSYILVDKHPCRHD-PSHLVTHRVQSNIVQFADCLLKAQFPRRRSKWHGHLQALDGMVAQEISFQI 688 (1655)
T ss_pred cHHHHHHHHhCCC-CeEEEECCCCCccC-CcccceEEEEeCHHHHHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHhhh
Confidence 53 3333322233 35999999998886 22221 2488999998866432211 112 112111000 0000000
Q ss_pred CCCCCCCHHHHHHHHHhhCCCCCEEEecCCccc----ccc-ccc-----------cccCCCeeEe-ccCcccccc--hHH
Q 007917 386 AQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSW----FNC-QKL-----------RLPENCGYEF-QMQYGSIGW--SVG 446 (585)
Q Consensus 386 ~~~~~~~~~~~~~~L~~~l~~~~ii~~d~G~~~----~~~-~~~-----------~~~~~~~~~~-~~~~g~mG~--~lp 446 (585)
....++++.++++.|++.+|++.+++.|.|++. .|. .++ ..+.+.+++. +.++|+||+ ++|
T Consensus 689 ~~~~~l~~~~v~~~L~~~Lp~d~ivv~d~g~~ird~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~G~mG~~G~lp 768 (1655)
T PLN02980 689 HAESSLTEPYVAHVISEALTSDSALFIGNSMAIRDADMYGCSSENYSSRIVDMMLSAELPCQWIQVAGNRGASGIDGLLS 768 (1655)
T ss_pred hcCCCcchHHHHHHHHHhCCCCCeEEEECcHHHHHHHHcCCccccccccccccccccccccccceEEecCCccchhhhHH
Confidence 112258899999999999999999999988642 332 222 1233444664 788999999 599
Q ss_pred HHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHh--CCCeEEEEEeCCceeeeeeec----------CCCCCCCCCCC
Q 007917 447 ATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRC--GQRSIIFLINNGGYTIEVEIH----------DGPYNVIKNWD 510 (585)
Q Consensus 447 aAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~--~lpv~ivV~NN~~~~~~~~~~----------~~~~~~~~~~d 510 (585)
+|||++++. +++|++|+|||||+ ||+|++|+ ++|++|||+||++|++++... +..+....++|
T Consensus 769 aAIGaala~-~r~Vv~i~GDGsF~m~~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~~~~~~~~~~~~~~~~~~~d 847 (1655)
T PLN02980 769 TAIGFAVGC-NKRVLCVVGDISFLHDTNGLSILSQRIARKPMTILVINNHGGAIFSLLPIAKRTEPRVLNQYFYTSHDIS 847 (1655)
T ss_pred HHHHHhhcC-CCCEEEEEehHHHHhhhhHHHHhhcccCCCCEEEEEEeCCCcHhhhcCccCCCCcchhHHHHhcCCCCCC
Confidence 999999997 89999999999999 99999984 999999999999999853210 11122335799
Q ss_pred HHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChHHHHHHHHhhhh
Q 007917 511 YTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSA 576 (585)
Q Consensus 511 ~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~~~~~~~~~~~~~~ 576 (585)
|.++|++||+ ++++|++++||+++|+++++ .++|+||||.++++++++..+.+.....+
T Consensus 848 f~~lA~a~G~-----~~~rV~~~~eL~~aL~~a~~--~~~p~lIEV~t~~~~~~~~~~~~~~~~~~ 906 (1655)
T PLN02980 848 IENLCLAHGV-----RHLHVGTKSELEDALFTSQV--EQMDCVVEVESSIDANAAFHSTLRKFACQ 906 (1655)
T ss_pred HHHHHHHcCC-----ceeecCCHHHHHHHHHHhhc--cCCCEEEEEecChhhhHHHHHHHHHHHHH
Confidence 9999999999 99999999999999999986 78999999999999999987776655543
No 57
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=100.00 E-value=2.3e-70 Score=520.30 Aligned_cols=519 Identities=18% Similarity=0.225 Sum_probs=427.1
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhc-Cc-cEEEEeCCcchHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSR-GV-GACVVTFTVGGLS 103 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~t-g~-~v~~~t~GpG~~n 103 (585)
.|+.-|+-+..|++.||++.||+||..+.|++.+|.+...|+.|++||-.+|.+||.||.|++ |. |+|+.||||..+.
T Consensus 3 kmravdaav~vlekegi~~afgvpgaainp~ysalr~~g~i~hvlarhvegashmaegytra~~gnigvcigtsgpagtd 82 (592)
T COG3960 3 KMRAVDAAVYVLEKEGITTAFGVPGAAINPFYSALRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTD 82 (592)
T ss_pred chhhhhHHHHHHHhcCcceecCCCccccCHHHHHHHhcCcHHHHHHHHhcchhhhhcccccccCCceEEEecCCCCCccc
Confidence 467778999999999999999999999999999999888999999999999999999999987 55 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-
Q 007917 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (585)
Q Consensus 104 ~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (585)
+++|+..|+.|++|+|+||||.|+....+. -+ |..|..++.+|++||...+..|..+|..+++||+++.++
T Consensus 83 mitglysa~adsipilcitgqaprarl~ke-----df---qavdi~~ia~pv~kwavtv~epalvp~v~qkafhlmrs~r 154 (592)
T COG3960 83 MITGLYSASADSIPILCITGQAPRARLHKE-----DF---QAVDIEAIAKPVSKWAVTVREPALVPRVLQQAFHLMRSGR 154 (592)
T ss_pred hhhhhhhcccccccEEEecCCCchhhhchh-----hh---hhhhHHHhhhhhhhhhhhhcchhhhHHHHHHHHHHHhcCC
Confidence 999999999999999999999998744432 12 345788999999999999999999999999999999996
Q ss_pred CCcEEEEecCCCCCCCCCCCCC--CCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHH
Q 007917 183 SKPVYISISCNLPGIPHPTFAR--DPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELAD 260 (585)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae 260 (585)
||||.|++|+|+|..+.+.+.. +|.+. . .+.....+.+++..+|..++||+|++|+|+-+.++.+.+.+|||
T Consensus 155 pgpvlidlp~dvq~aeiefd~d~yepl~~----~--kpaatr~qaekalaml~~aerplivagggiinadaa~l~~efae 228 (592)
T COG3960 155 PGPVLIDLPFDVQVAEIEFDPDMYEPLPV----Y--KPAATRVQAEKALAMLIQAERPLIVAGGGVINADAAALLQEFAE 228 (592)
T ss_pred CCCeEEecccceEEEEEecCccccCcCCc----C--CchhHHHHHHHHHHHHhhccCcEEEecCceecccHHHHHHHHHH
Confidence 7999999999998754322211 12221 1 11234556788999999999999999999999999999999999
Q ss_pred HhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceee
Q 007917 261 ATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTV 340 (585)
Q Consensus 261 ~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~ 340 (585)
..|+||+.|.||-|++|+|||+..|+..--.++++.+..+-++|+|+-+|.++..+.|++...+.+..++||+|++|..+
T Consensus 229 l~gvpviptlmgwg~ipddhplmagm~glqtshrygnatll~sd~vfgignrwanrhtgsv~vyt~gr~fihvdieptqi 308 (592)
T COG3960 229 LTGVPVIPTLMGWGCIPDDHPLMAGMVGLQTSHRYGNATLLASDMVFGIGNRWANRHTGSVEVYTEGRKFIHVDIEPTQI 308 (592)
T ss_pred HcCCcccchhccccccCCcchhhcccccceecccccchhhhhhhheeeccchhhhcccCceeeeecCceEEEEecccccc
Confidence 99999999999999999999999999633356778888889999999999999888888877777788999999999999
Q ss_pred cCCCcccc----ccHHHHHHHHHHHhcc-Cc----cchhhhh---hccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCC
Q 007917 341 GNGPSLGW----VFMADFLSALAKKLRK-NT----TALENYR---RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDT 408 (585)
Q Consensus 341 ~~~~~~~~----~~~~~~l~~L~~~l~~-~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 408 (585)
| +...++ .|.++.|+.+++...+ +. ..|..|. +.+.........-++-|+.|.++++++++.++.|.
T Consensus 309 g-rvf~pdlgivsda~aal~~~ldva~ewk~agkl~~~~aw~~~cq~rkrtl~rkthfd~vp~kpqrvyeemn~~fgrd~ 387 (592)
T COG3960 309 G-RVFCPDLGIVSDAKAALTLLLDVAQEWKKAGKLPCRKAWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDV 387 (592)
T ss_pred c-eeecCccceeechHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHhhcCCce
Confidence 8 322333 2678888877764321 11 1233332 11111111222345568999999999999999999
Q ss_pred EEEecCCcccc-ccccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeE
Q 007917 409 AVIAETGDSWF-NCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSI 483 (585)
Q Consensus 409 ii~~d~G~~~~-~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ 483 (585)
-+++-+|.+.+ .++++...+++.|+..+..|.+||.+|+|+|...|.|+|.||++.||-.|+ ||....++++|.+
T Consensus 388 ~yvstiglsqia~aqflhv~~pr~wincgqagplgwtipaalgv~~adp~r~vvalsgdydfqfmieelavgaq~k~pyi 467 (592)
T COG3960 388 CYVTTIGLSQIAAAQFLHVFKPRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDYDFQFLIEELAVGAQFKIPYI 467 (592)
T ss_pred eEEEeccHHHHhhhhhhhhcCCcceeecCccCCcccccchhhceeecCCCCceEEeecCchHHHHHHHHhhhhcccCceE
Confidence 99999998875 456666666666999999999999999999999999999999999999998 9999999999999
Q ss_pred EEEEeCCceeeeeeec---CCCC------CC-------CCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--
Q 007917 484 IFLINNGGYTIEVEIH---DGPY------NV-------IKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG-- 545 (585)
Q Consensus 484 ivV~NN~~~~~~~~~~---~~~~------~~-------~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~-- 545 (585)
.||.||...|..++.+ +-.| .+ --.+|..++++++|+ +.+||.+++|+..+++++..
T Consensus 468 hv~vnnaylglirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~v~eglgc-----kairv~~p~e~a~af~~a~~lm 542 (592)
T COG3960 468 HVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGC-----KAIRVFKPEDIAPAFEQAKALM 542 (592)
T ss_pred EEEecchHHHHHHHHHhcCCccceeeehhhccCCccccccCccceeehhccCc-----eeEEecChHHhhHHHHHHHHHH
Confidence 9999999888621110 1111 11 135799999999998 99999999999999999865
Q ss_pred cCCCCeEEEEEEcCCCCCh
Q 007917 546 EQKDSLCFIEVFVHKDDTS 564 (585)
Q Consensus 546 ~~~~gp~vIeV~v~~~~~~ 564 (585)
.+..-|+|+|+.+.+-.+.
T Consensus 543 ~eh~vpvvve~ilervtni 561 (592)
T COG3960 543 AQHRVPVVVEVILERVTNI 561 (592)
T ss_pred HhcCCCeeeehHHHHhhcc
Confidence 4567899999998875543
No 58
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-68 Score=527.68 Aligned_cols=527 Identities=21% Similarity=0.275 Sum_probs=413.5
Q ss_pred ccHHHHHHHHHHHcC---------CCEEEecCCCChH-HHHHhhhcCC-CCeEEecCchhhHHHhhhhhhhhcCc---cE
Q 007917 27 GTLGRHLARRLVEIG---------AKDVFSVPGDFNL-TLLDHLIAEP-ELNLVGCCNELNAGYAADGYARSRGV---GA 92 (585)
Q Consensus 27 ~~~a~~i~~~L~~~G---------v~~vFg~PG~~~~-~l~~al~~~~-~i~~i~~~~E~~A~~~A~gyar~tg~---~v 92 (585)
+|.++++++.|.+.= |.-||.+-|..|. .|=++|+..+ .+.++..+|||+.+++|.+|+|...| -+
T Consensus 7 lT~aQAlvrfL~~Q~~~~ge~~p~~~GvfaIFGHGNVaGiGeAL~~~~~~l~~yqg~NEQgMAhaAiayaKq~~Rrr~~A 86 (617)
T COG3962 7 LTMAQALVRFLAQQMTEIGEIVPFVGGVFAIFGHGNVAGIGEALYQVRDHLPTYQGHNEQGMAHAAIAYAKQHRRRRIYA 86 (617)
T ss_pred hHHHHHHHHHHHhhhhhhcccccccceeeEEecCcchhhhHHHHHhCccccchhhcccHhHHHHHHHHHHHHHhhceeeE
Confidence 688999999998653 3467888886654 5777887654 59999999999999999999999864 56
Q ss_pred EEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCC-hHHHHHHhhhceeEEEEecCcchhHHH
Q 007917 93 CVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPD-FTQELRCFQAITCSQAVVNNLGDAHEL 171 (585)
Q Consensus 93 ~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~k~~~~v~~~~~~~~~ 171 (585)
|..+.|||++|++++.+-|..+++|+|+|-||.-.. +..++.+|+.-+.++ .+...+.|+|++||..+|++||++-..
T Consensus 87 ~tsSiGPGA~NmvTaAalA~~NrlPvLllPgDvfA~-R~PDPVLQQ~E~~~d~~it~NDcfrPVSRYfDRItRPEQl~sa 165 (617)
T COG3962 87 VTSSIGPGAANMVTAAALAHVNRLPVLLLPGDVFAT-RQPDPVLQQLEQFGDGTITTNDCFRPVSRYFDRITRPEQLMSA 165 (617)
T ss_pred EecccCCcHHHHHHHHHHHHhhcCceEeeccchhcc-cCCChHHHhhhccccCceecccccccHHHHhhhcCCHHHHHHH
Confidence 667789999999999999999999999999996544 344444433211111 112357899999999999999999999
Q ss_pred HHHHHHHhhhc--CCcEEEEecCCCCCCCCCCCCCCCCCccCC--CCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccc
Q 007917 172 IDTAISTALKE--SKPVYISISCNLPGIPHPTFARDPVPFFLA--PKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIR 247 (585)
Q Consensus 172 l~~A~~~a~~~--~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~ 247 (585)
+.||++....+ .|||.|.+|.||+.. ..+.+ ..+... .....+++++..++.++++|+++|||+||+|+|+.
T Consensus 166 l~rA~~VmTDPA~~GpvTl~l~QDVq~e--A~Dyp--~~FF~~rv~~~rR~~Pd~~eL~~A~~lik~ak~PlIvaGGGv~ 241 (617)
T COG3962 166 LPRAMRVMTDPADCGPVTLALCQDVQAE--AYDYP--ESFFEKRVWRIRRPPPDERELADAAALIKSAKKPLIVAGGGVL 241 (617)
T ss_pred HHHHHHHhCChhhcCceEEEechhhhhh--hcCCc--HHhhhhhhhhccCCCCCHHHHHHHHHHHHhcCCCEEEecCcee
Confidence 99999999986 599999999999863 22221 111100 00111234667899999999999999999999999
Q ss_pred hhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccC-C
Q 007917 248 VAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLI-K 326 (585)
Q Consensus 248 ~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~-~ 326 (585)
++++.++|++|+|..|+||+.|-.|||.++.|||+++|.. |..|...++.+.++||+||.||+++.++.|.+|..|. +
T Consensus 242 YS~A~~~L~af~E~~~iPv~ETQaGKsal~~dhplNlG~v-GvTGt~AAN~~A~~ADlVigiGTR~~DFTTgS~alF~~~ 320 (617)
T COG3962 242 YSGAREALRAFAETHGIPVVETQAGKSALAWDHPLNLGGV-GVTGTLAANRAAEEADLVIGIGTRLQDFTTGSKALFKNP 320 (617)
T ss_pred echHHHHHHHHHHhcCCceEeccCCcccccccCccccccc-cccchHHHHhhhhhcCEEEEecccccccccccHHHhcCC
Confidence 9999999999999999999999999999999999999985 8899999999999999999999999999999998765 6
Q ss_pred CcceEEEcCCceeecCCCccc-cccHHHHHHHHHHHhccCccc--h-hhhhhc---cCCCCC-CCCCC--CCCCCCHHHH
Q 007917 327 KEKAIIVQPHRVTVGNGPSLG-WVFMADFLSALAKKLRKNTTA--L-ENYRRI---YVPPGI-PVKRA--QNEPLRVNVL 396 (585)
Q Consensus 327 ~~~~i~id~~~~~~~~~~~~~-~~~~~~~l~~L~~~l~~~~~~--~-~~~~~~---~~~~~~-~~~~~--~~~~~~~~~~ 396 (585)
..+++.++..+.+-....-++ ..|++..|++|.+.|..-+.. | .+..+. +..+.. +.... -+...+..++
T Consensus 321 ~~k~l~lNV~~~da~K~~a~~lvaDAr~~L~~L~~~L~g~~~~~~w~~~~~~~~~~w~~~~~~~~a~~~~lnt~ptq~~v 400 (617)
T COG3962 321 GVKFLNLNVQPFDAYKHDALPLVADARAGLEALSEALGGYRTAAGWTDERERLKAAWDAEADAPTAKNHFLNTLPTQTQV 400 (617)
T ss_pred CceEEEeecccccccccccceehhHHHHHHHHHHHHhcccccchhHHHHHHHhhhhhhhhcccccccccccccCccchhH
Confidence 778999988776543112222 248899999999998754321 1 111111 101100 00111 1133567889
Q ss_pred HHHHHhhCCCCCEEEecCCccccccccc-cccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----h
Q 007917 397 FKHIQDMLSGDTAVIAETGDSWFNCQKL-RLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----E 471 (585)
Q Consensus 397 ~~~L~~~l~~~~ii~~d~G~~~~~~~~~-~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----e 471 (585)
+-.+++..+++++|++-.|+---....+ +...+.+|..-++|+||||-++.++|+|+|.|+|.|++++|||||+ |
T Consensus 401 igav~~~~~~~svvvcAAGsLPGdLhkLW~~~~p~~YH~EYgfSCMGYEiaG~lG~K~a~pdreV~vmVGDGSymMlnSE 480 (617)
T COG3962 401 IGAVQRTISDDSVVVCAAGSLPGDLHKLWRAGVPGTYHLEYGFSCMGYEIAGGLGAKAAEPDREVYVMVGDGSYMMLNSE 480 (617)
T ss_pred HHHHHhhcCCCcEEEEeCCCCcHHHHHHhccCCCCceeeeecccccccccccccccccCCCCCeEEEEEcccchhhhhHH
Confidence 9999999999999999888754332222 2222334999999999999999999999999999999999999999 9
Q ss_pred HHHHHHhCCCeEEEEEeCCceeee-e-ee-cCC-CCC----------CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHH
Q 007917 472 ISTMIRCGQRSIIFLINNGGYTIE-V-EI-HDG-PYN----------VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELT 537 (585)
Q Consensus 472 L~ta~~~~lpv~ivV~NN~~~~~~-~-~~-~~~-~~~----------~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~ 537 (585)
|.|++.+++.|+|++++|.|||.. + ++ +.+ .|+ .+..+||++.|++||+ +.++|.+.+||+
T Consensus 481 L~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga-----~~~kv~~i~eL~ 555 (617)
T COG3962 481 LATSVMLGKKIIVVLLDNRGYGCINRLQMATGGASFNNLLRDTDHEEEILQVDFAAHAESYGA-----KAYKVGTIEELE 555 (617)
T ss_pred HHHHHHcCCeEEEEEECCCCcchhhhhhhhcCcchhhhhhhhhcccCCCCcccHHHHHhhcCc-----eeEecCCHHHHH
Confidence 999999999999999999999972 1 11 121 221 2578999999999999 999999999999
Q ss_pred HHHHHhhhcCCCCeEEEEEEcCCCCChHH
Q 007917 538 EAMKTATGEQKDSLCFIEVFVHKDDTSKE 566 (585)
Q Consensus 538 ~al~~a~~~~~~gp~vIeV~v~~~~~~~~ 566 (585)
.+|+++.. +.+++||+|.++|...++.
T Consensus 556 aAL~~Ak~--~~~ttvi~I~t~P~~~t~~ 582 (617)
T COG3962 556 AALADAKA--SDRTTVIVIDTDPKTTTDD 582 (617)
T ss_pred HHHHHHHh--CCCCEEEEEecCCccccCC
Confidence 99999986 8999999999998665543
No 59
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=100.00 E-value=3.5e-69 Score=573.41 Aligned_cols=410 Identities=19% Similarity=0.167 Sum_probs=328.7
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHHHH
Q 007917 29 LGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNA 107 (585)
Q Consensus 29 ~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~g 107 (585)
.+++|++.|+++||+||||+||+++.||+++|.+.++|++|.+|||++|+|||+||||+||+ |||++|+|||++|+++|
T Consensus 2 ~~~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~g 81 (432)
T TIGR00173 2 WASVLVEELVRLGVRHVVISPGSRSTPLALAAAEHPRLRVHVHIDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPA 81 (432)
T ss_pred hHHHHHHHHHHcCCCEEEECCCcccHHHHHHHHhCCCcEEEEecCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHH
Confidence 47999999999999999999999999999999765689999999999999999999999999 99999999999999999
Q ss_pred HHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcch------hHHHHHHHHHHhhh
Q 007917 108 IAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGD------AHELIDTAISTALK 181 (585)
Q Consensus 108 l~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~------~~~~l~~A~~~a~~ 181 (585)
|++|+.+++|||+|+|++++...+++. .|..||.++|+++|||+.++.++++ +++.|++|++.|.+
T Consensus 82 l~~A~~~~~Pvl~i~g~~~~~~~~~~~--------~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~ 153 (432)
T TIGR00173 82 VIEASYSGVPLIVLTADRPPELRGCGA--------NQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQG 153 (432)
T ss_pred HHHhcccCCcEEEEeCCCCHHHhCCCC--------CcccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhC
Confidence 999999999999999999987665542 2456899999999999999999998 89999999999999
Q ss_pred c-CCcEEEEecCCCCCCCCCCCCCCCC-C--ccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHH
Q 007917 182 E-SKPVYISISCNLPGIPHPTFARDPV-P--FFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIE 257 (585)
Q Consensus 182 ~-~gPV~i~iP~dv~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~ 257 (585)
+ ||||||+||.|++..+.+....... . ...........++++.+++++++|.+||||+|++|.|+.++ +.++|.+
T Consensus 154 ~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~AkrPvi~~G~g~~~~-a~~~l~~ 232 (432)
T TIGR00173 154 PPPGPVHINVPFREPLYPDPLLQPLQPWLRSGVPTVTTGPPVLDPESLDELWDRLNQAKRGVIVAGPLPPAE-DAEALAA 232 (432)
T ss_pred CCCCCEEEeCCCCCCCCCCCcccccccccccccccccCCCCCCChhhHHHHHHHHhhcCCcEEEEcCCCcHH-HHHHHHH
Confidence 6 6999999999996532111100000 0 00000001112345678999999999999999999999876 8999999
Q ss_pred HHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCc
Q 007917 258 LADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHR 337 (585)
Q Consensus 258 lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~ 337 (585)
|+|++++||++|++|||.+ ++| +++|.+.+..+++.+++++ ++|+||+||++++++.+..|. ..++.++||||.|+
T Consensus 233 lae~~~~PV~tt~~~~~~~-~~~-~~~G~~~~~~~~~~~~~~~-~aDlvl~lG~~~~~~~~~~~~-~~~~~~~i~vd~d~ 308 (432)
T TIGR00173 233 LAEALGWPLLADPLSGLRG-GPH-LVIDHYDLLLANPELREEL-QPDLVIRFGGPPVSKRLRQWL-ARQPAEYWVVDPDP 308 (432)
T ss_pred HHHhCCCeEEEeCCCCCCC-CCC-CCcCHHHHHhcCCchhhhC-CCCEEEEeCCCcchhHHHHHH-hCCCCcEEEECCCC
Confidence 9999999999999999999 789 9999875566777788888 999999999999887766662 23456899999999
Q ss_pred eeecCCCccc----cccHHHHHHHHHHHhccCcc-chhhhhhccCC--CCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEE
Q 007917 338 VTVGNGPSLG----WVFMADFLSALAKKLRKNTT-ALENYRRIYVP--PGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAV 410 (585)
Q Consensus 338 ~~~~~~~~~~----~~~~~~~l~~L~~~l~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii 410 (585)
..++ ..+.. ..|++.+|++|.+.++.... +...|.+.... .... ....+.++++.+++++|++.+|++.++
T Consensus 309 ~~~~-~~~~~~~~i~~D~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~p~~~~~~l~~~lp~d~iv 386 (432)
T TIGR00173 309 GWLD-PSHHATTRLEASPAEFAEALAGLLKNPDAAWLDRWLEAEAKAREALR-EVLAEEPLSELSLARALSQLLPEGAAL 386 (432)
T ss_pred CccC-CCCCceEEEEECHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHH-HHhccCCccHHHHHHHHHHhCCCCCeE
Confidence 8886 32222 24899999999888754221 12222211100 0000 011234699999999999999999999
Q ss_pred EecCCcccccccc-cccc-CCCeeEeccCcccccchHHHHHHHhh
Q 007917 411 IAETGDSWFNCQK-LRLP-ENCGYEFQMQYGSIGWSVGATLGYAQ 453 (585)
Q Consensus 411 ~~d~G~~~~~~~~-~~~~-~~~~~~~~~~~g~mG~~lpaAiGaal 453 (585)
+.|.|++..|... +... .+.++++++++|+|||+||+|||+++
T Consensus 387 v~d~g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~glp~aiGa~~ 431 (432)
T TIGR00173 387 FVGNSMPIRDLDTFAQPPDKPIRVFANRGASGIDGTLSTALGIAL 431 (432)
T ss_pred EEECCHHHHHHHhcCCcCCCCceEEecCchhhHHHHHHHHHHhhc
Confidence 9999999887654 3333 45779999999999999999999987
No 60
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=100.00 E-value=5.8e-59 Score=475.41 Aligned_cols=520 Identities=19% Similarity=0.169 Sum_probs=396.3
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHH
Q 007917 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (585)
...+..|++.|.++||++++.+|||+++||.-++.+.++|+++.-.+|++|+|+|.|.||++++ .+++||||++++|++
T Consensus 8 t~~a~v~~eeL~r~GV~~vvicPGSRSTPLala~~~~~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~ANl~ 87 (566)
T COG1165 8 TLWARVFLEELARLGVRDVVICPGSRSTPLALAAAAHDAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVANLY 87 (566)
T ss_pred HHHHHHHHHHHHHcCCcEEEECCCCCCcHHHHHHHhcCCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhhhcc
Confidence 4678999999999999999999999999999999988899999999999999999999999999 889999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHH-------HHHHHHH
Q 007917 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHEL-------IDTAIST 178 (585)
Q Consensus 106 ~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~-------l~~A~~~ 178 (585)
++|.||..+++||||+|+|+|.+.++++ .+|++||..+|..+++|+.++..|+.-.++ -.+++..
T Consensus 88 PAViEA~~srvpLIVLTADRP~EL~~~G--------AnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~~~ 159 (566)
T COG1165 88 PAVIEANLSRVPLIVLTADRPPELRGCG--------ANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQQ 159 (566)
T ss_pred HHHHhhhhcCCceEEEeCCCCHHHhcCC--------CchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988876 468999999999999999999888766543 3344445
Q ss_pred hhhc-CCcEEEEecCCCCCCCCCCCCCCCCCc-----c-----CCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccc
Q 007917 179 ALKE-SKPVYISISCNLPGIPHPTFARDPVPF-----F-----LAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIR 247 (585)
Q Consensus 179 a~~~-~gPV~i~iP~dv~~~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~ 247 (585)
|+++ +|||||++|++.+....+... .+... . ..+.... .. ...+.+ .+. ..++|++||+|.-..
T Consensus 160 a~~~~~GpVHiN~PfrePL~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~-~~~-~~~~rgviv~G~~~~ 234 (566)
T COG1165 160 ARTPHAGPVHINVPFREPLVPDLEPE-GAGTPWGRPLGHWWFYTGPWTVD-QG-PDLLSE-WFF-WRQKRGVIVAGRMSA 234 (566)
T ss_pred ccCCCCCceEecCCCCccCCCCCCcc-ccccccccccCchhhcCCceeee-cc-cccccc-hhh-hcccCceEEEecCch
Confidence 5455 699999999998774222110 01100 0 0000000 00 112222 233 357999999998765
Q ss_pred hhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCC
Q 007917 248 VAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKK 327 (585)
Q Consensus 248 ~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~ 327 (585)
. ..+++.++|+.+|||+++++.+.- ++ ++..|+.++.++.+.+-+.. |+||.||+++.++....|-.....
T Consensus 235 ~--e~~~i~~~a~~lg~PilaDplS~l-----r~-~i~~yD~~L~~~~~~~~L~~-d~VI~fG~~~~SK~l~qwl~~~~~ 305 (566)
T COG1165 235 Q--EGKGILALANTLGWPILADPLSPL-----RN-YIPCYDLWLANPKAAEKLRP-DIVIQFGSPPTSKRLLQWLADTEP 305 (566)
T ss_pred h--hhHHHHHHHHHhCCceeccccccc-----CC-CcccchhhhcCchhhhhcCc-cEEEEeCCCcccHHHHHHHhccCC
Confidence 4 666699999999999999987541 11 25566777777777666655 999999999888877777654444
Q ss_pred cceEEEcCCceeecCC---CccccccHHHHHHHHHHHhccCccchhhhhhccCCCC--CCCCCCCCCCCCHHHHHHHHHh
Q 007917 328 EKAIIVQPHRVTVGNG---PSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPG--IPVKRAQNEPLRVNVLFKHIQD 402 (585)
Q Consensus 328 ~~~i~id~~~~~~~~~---~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~~ 402 (585)
.+.+.||+....+++. .....+++..+++.+......++.|..+|.......+ ..... .+..++..+++.+|.+
T Consensus 306 ~~~~vvd~~~~~~Dp~~~~~~~~~~~v~~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~v~~~~-~~~~~~e~~~a~~l~~ 384 (566)
T COG1165 306 IEYWVVDPGGGWLDPSHHATTRLSADVATWARSIHPAGRIRKPWLDEWLALNEKARQAVRDQL-AAEALTEAHLAAALAD 384 (566)
T ss_pred CcEEEEcCCCCcCCcccccceEEEeehhHhHHHhccccccccHHHHHHHHHHHHHHHHHHHHh-cccCchhhHHHHHHHH
Confidence 6788898876654321 1223457777776654433322233334421110000 00011 1116788999999999
Q ss_pred hCCCCCEEEecCCccccccccc-cccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHH
Q 007917 403 MLSGDTAVIAETGDSWFNCQKL-RLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIR 477 (585)
Q Consensus 403 ~l~~~~ii~~d~G~~~~~~~~~-~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~ 477 (585)
.+|+++.++....+..++...+ ..+++.++++|+|.++|.+.+++|+|++.|. .+|+|+++||.||+ .|....+
T Consensus 385 ~lp~~~~LFvgNSmpVRdvd~~~~~~~~~~v~sNRGA~GIDG~vSTA~Gi~~a~-~~ptv~liGDLS~lhD~NgLl~~k~ 463 (566)
T COG1165 385 LLPPQDQLFVGNSMPVRDVDALGQLPAGYRVYSNRGASGIDGTVSTALGIARAT-QKPTVALIGDLSFLHDLNGLLLLKK 463 (566)
T ss_pred hCCCCCeEEEecCchhhhHHHhccCccCceeecCCCccccchhHHHHhhhhhhc-CCceEEEEechhhhhccchHhhcCC
Confidence 9999999994433334555443 3447788999999999999999999999985 67899999999999 5555667
Q ss_pred hCCCeEEEEEeCCceeeeeeecC--------CCCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCC
Q 007917 478 CGQRSIIFLINNGGYTIEVEIHD--------GPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKD 549 (585)
Q Consensus 478 ~~lpv~ivV~NN~~~~~~~~~~~--------~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~ 549 (585)
...|++|||+||+|+||+..+.. ..|...++.||+.+|+.||. +|.++.+++||+.+++.+.. ..
T Consensus 464 ~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~fe~~F~tPh~ldF~~la~~y~l-----~y~~~~s~~~l~~~~~~~~~--~~ 536 (566)
T COG1165 464 VPQPLTIVVVNNNGGGIFSLLPQAQSEPVFERLFGTPHGLDFAHLAATYGL-----EYHRPQSWDELGEALDQAWR--RS 536 (566)
T ss_pred CCCCeEEEEEeCCCceeeeeccCCCCcchHHHhcCCCCCCCHHHHHHHhCc-----cccccCcHHHHHHHHhhhcc--CC
Confidence 89999999999999999755431 13445588999999999999 99999999999999999985 68
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHhhhhh
Q 007917 550 SLCFIEVFVHKDDTSKELLEWGSRVSAA 577 (585)
Q Consensus 550 gp~vIeV~v~~~~~~~~~~~~~~~~~~~ 577 (585)
|..||||++++++....++.+.+++...
T Consensus 537 g~~viEvkt~r~~~~~~~q~l~~~~~~~ 564 (566)
T COG1165 537 GTTVIEVKTDRSDGAQLHQALLAQVSHA 564 (566)
T ss_pred CcEEEEEecChhHHHHHHHHHHHHHhhh
Confidence 8999999999999999999999988753
No 61
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=100.00 E-value=5.5e-41 Score=307.85 Aligned_cols=161 Identities=25% Similarity=0.397 Sum_probs=150.3
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHHH
Q 007917 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLN 106 (585)
Q Consensus 28 ~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~ 106 (585)
+++++|++.|+++||++|||+||+++.+|++++.+.++|++|.+|||++|+|||+||+|++|+ +||++|+|||++|+++
T Consensus 1 ~~~~~l~~~L~~~Gv~~vFgipG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~ 80 (164)
T cd07039 1 TVADVIVETLENWGVKRVYGIPGDSINGLMDALRREGKIEFIQVRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLN 80 (164)
T ss_pred CHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHH
Confidence 578999999999999999999999999999999765689999999999999999999999999 9999999999999999
Q ss_pred HHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCCcE
Q 007917 107 AIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPV 186 (585)
Q Consensus 107 gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV 186 (585)
|+++|+.+++|||+|+|+.++...+++ .+ |..||.++++++|||+.++.+++++++.+++|++.|.+++|||
T Consensus 81 ~l~~A~~~~~Pvl~I~g~~~~~~~~~~-----~~---q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~GPV 152 (164)
T cd07039 81 GLYDAKRDRAPVLAIAGQVPTDELGTD-----YF---QEVDLLALFKDVAVYNETVTSPEQLPELLDRAIRTAIAKRGVA 152 (164)
T ss_pred HHHHHHhcCCCEEEEecCCcccccCCC-----CC---cccCHHHHHHHhhcEEEEeCCHHHHHHHHHHHHHHHhcCCCCE
Confidence 999999999999999999998865553 12 3358999999999999999999999999999999999988999
Q ss_pred EEEecCCCCC
Q 007917 187 YISISCNLPG 196 (585)
Q Consensus 187 ~i~iP~dv~~ 196 (585)
||+||.|++.
T Consensus 153 ~l~iP~dv~~ 162 (164)
T cd07039 153 VLILPGDVQD 162 (164)
T ss_pred EEEeChHHhc
Confidence 9999999965
No 62
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=100.00 E-value=5.4e-39 Score=294.25 Aligned_cols=162 Identities=52% Similarity=0.867 Sum_probs=148.1
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcchHHHHHHHHH
Q 007917 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAG 110 (585)
Q Consensus 31 ~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~gl~~ 110 (585)
|+|++.|+++||++|||+||+.+.+|+++|.+.++|++|.++||++|+|||+||+|+|+.+||++|+|||++|+++||++
T Consensus 1 ~~l~~~L~~~Gi~~vFg~pG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mA~gyar~t~~gv~~~t~GpG~~n~~~gl~~ 80 (162)
T cd07038 1 EYLLERLKQLGVKHVFGVPGDYNLPLLDAIEENPGLRWVGNCNELNAGYAADGYARVKGLGALVTTYGVGELSALNGIAG 80 (162)
T ss_pred CHHHHHHHHcCCCEEEEeCCccHHHHHHHHhhcCCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCccHHHHHHHHHH
Confidence 47999999999999999999999999999976568999999999999999999999993399999999999999999999
Q ss_pred hhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCCcEEEEe
Q 007917 111 AYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISI 190 (585)
Q Consensus 111 A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~i 190 (585)
|+.+++|||+|+|+.+....+++..+|+..+..++.||.++++++|||+.++.+++++++.+++||+.|.+++|||||+|
T Consensus 81 A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~i 160 (162)
T cd07038 81 AYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARLTDPENAAEEIDRVLRTALRESRPVYIEI 160 (162)
T ss_pred HHHcCCCEEEEecCCCccccccccceeecccccchHHHHHHHHhheeEEEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence 99999999999999998877776666655532334478999999999999999999999999999999999889999999
Q ss_pred cC
Q 007917 191 SC 192 (585)
Q Consensus 191 P~ 192 (585)
|.
T Consensus 161 P~ 162 (162)
T cd07038 161 PR 162 (162)
T ss_pred cC
Confidence 94
No 63
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=100.00 E-value=3.4e-39 Score=293.31 Aligned_cols=153 Identities=23% Similarity=0.284 Sum_probs=142.4
Q ss_pred HHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHHHHHHH
Q 007917 32 HLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAG 110 (585)
Q Consensus 32 ~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~gl~~ 110 (585)
+|++.|+++||++|||+||+++.+|++++.++++|++|.+|||++|+|||+||+|+||+ +||++|+|||.+|+++||++
T Consensus 2 ~l~~~L~~~Gv~~vFg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~~ 81 (162)
T cd07037 2 ALVEELKRLGVRDVVISPGSRSAPLALAAAEHPEFRLHVRVDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVE 81 (162)
T ss_pred hHHHHHHHCCCCEEEECCCcchHHHHHHHHhCCCceEEeccChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHHH
Confidence 68999999999999999999999999999766689999999999999999999999999 99999999999999999999
Q ss_pred hhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcch------hHHHHHHHHHHhhhc-C
Q 007917 111 AYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGD------AHELIDTAISTALKE-S 183 (585)
Q Consensus 111 A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~------~~~~l~~A~~~a~~~-~ 183 (585)
|+.+++|||+|+|+.+....+++ . .|..||..+++++|||+.+++++++ +++.+++|++.|.++ |
T Consensus 82 A~~~~~Pvl~i~g~~~~~~~~~~-----~---~q~~d~~~l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~ 153 (162)
T cd07037 82 AYYSGVPLLVLTADRPPELRGTG-----A---NQTIDQVGLFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPP 153 (162)
T ss_pred HHhcCCCEEEEECCCCHHhcCCC-----C---CcccchhhhccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999998755543 2 2346889999999999999999999 999999999999996 6
Q ss_pred CcEEEEecC
Q 007917 184 KPVYISISC 192 (585)
Q Consensus 184 gPV~i~iP~ 192 (585)
|||||+||.
T Consensus 154 GPv~l~iP~ 162 (162)
T cd07037 154 GPVHLNLPF 162 (162)
T ss_pred CCEEEeccC
Confidence 999999995
No 64
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=100.00 E-value=3.8e-35 Score=322.75 Aligned_cols=484 Identities=15% Similarity=0.089 Sum_probs=310.1
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC---CCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcch
Q 007917 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGG 101 (585)
Q Consensus 25 ~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~---~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~ 101 (585)
..++|+++++..+.+.|++.++|+||++.+++.+.|.+. .++.+++..+|.+|..||.|-+. +|.-++..|+|||+
T Consensus 3 ~~~~GneA~A~g~~~ag~~~~~~YPiTP~t~i~e~l~~~~~~~~~~~~~~~~E~~a~~~~~GAs~-aG~ra~t~ts~~Gl 81 (595)
T TIGR03336 3 ELLLGNEAIARGALEAGVGVAAAYPGTPSSEITDTLAKVAKRAGVYFEWSVNEKVAVEVAAGAAW-SGLRAFCTMKHVGL 81 (595)
T ss_pred eeecHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHhhhhccEEEEECcCHHHHHHHHHHHHh-cCcceEEEccCCch
Confidence 468999999999999999999999999999999998753 35899999999999999999554 55545667889998
Q ss_pred HHHHHHHHHhh--hcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeE-EEEecCcchhHHHHHHHHHH
Q 007917 102 LSVLNAIAGAY--SENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCS-QAVVNNLGDAHELIDTAIST 178 (585)
Q Consensus 102 ~n~~~gl~~A~--~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~-~~~v~~~~~~~~~l~~A~~~ 178 (585)
.-+.-.|..+. --+.|++++.+++|... +.+..|. | .++.-.+.| .....+++++.++..+||++
T Consensus 82 ~~~~e~l~~~~~~g~~~~iV~~~~~~~gp~---------~~~~~q~-d--~~~~~~~~~~vl~p~~~qE~~d~~~~Af~l 149 (595)
T TIGR03336 82 NVAADPLMTLAYTGVKGGLVVVVADDPSMH---------SSQNEQD-T--RHYAKFAKIPCLEPSTPQEAKDMVKYAFEL 149 (595)
T ss_pred hhhHHHhhhhhhhcCcCceEEEEccCCCCc---------cchhhHh-H--HHHHHhcCCeEECCCCHHHHHHHHHHHHHH
Confidence 77777776655 34677999999886652 1221111 1 122222333 34556789999999999999
Q ss_pred hhhcCCcEEEEecCCCCCCCCCCCCCC--CCC----ccCCCC--C--C-Chh----hHHHHHHHHHHHHHhcCCC-----
Q 007917 179 ALKESKPVYISISCNLPGIPHPTFARD--PVP----FFLAPK--V--S-NQL----GLEAAVEATADFLNKAVKP----- 238 (585)
Q Consensus 179 a~~~~gPV~i~iP~dv~~~~~~~~~~~--~~~----~~~~~~--~--~-~~~----~~~~~~~~~~~~l~~a~rp----- 238 (585)
|..-+-||.+..-..+.+..+++.... +.+ ....+. . + ... ...+.++.+.+.....+..
T Consensus 150 ae~~~~PV~v~~d~~l~h~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (595)
T TIGR03336 150 SEKFGLPVILRPTTRISHMRGDVELGEIPKEEVVKGFEKDPERYVMVPAIARVRHKKLLSKQHKLREELNESPLNRLEIN 229 (595)
T ss_pred HHHHCCCEEEEEeeeeccceeeEecCCCcccccccCCCCChhhcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCceeccC
Confidence 999889999998776665433322110 000 000000 0 0 000 0112223333222221111
Q ss_pred ---EEEeCcccchhchHHHHHHHHHHhCC--CeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCcc
Q 007917 239 ---VLVGGPNIRVAKAQKAFIELADATGY--PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIF 313 (585)
Q Consensus 239 ---vIi~G~g~~~~~a~~~l~~lae~l~~--Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~ 313 (585)
+.|+..|.....+.+.+.+ +|+ .|+. +..-.|+ ......+++++.+.||++-...
T Consensus 230 ~~di~iv~~G~~~~~a~ea~~~----~Gi~~~v~~-------~~~i~Pl---------d~~~i~~~~~~~~~vivvEe~~ 289 (595)
T TIGR03336 230 GAKIGVIASGIAYNYVKEALER----LGVDVSVLK-------IGFTYPV---------PEGLVEEFLSGVEEVLVVEELE 289 (595)
T ss_pred CCCEEEEEcCHHHHHHHHHHHH----cCCCeEEEE-------eCCCCCC---------CHHHHHHHHhcCCeEEEEeCCc
Confidence 5566666544334443333 343 2332 1111222 2234677889999999995432
Q ss_pred CCcccccccccCC--CcceEEEcCCceeecCCCccccccHHHHHHHHHHHhccCccchhhhhhccCCCCCCCCCCCCCCC
Q 007917 314 NDYSSVGYSLLIK--KEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPL 391 (585)
Q Consensus 314 ~~~~~~~~~~~~~--~~~~i~id~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (585)
..... ....+.. ..++..+......+ .....+|.+.+.+.|.+. ......... +.......+....-...+
T Consensus 290 ~~~~~-~~~~~~~~~~~~v~~~G~~d~fi---~~~~~Ld~~~i~~~i~~~-~~~~~~~~~--~~~~~~~~~r~~~~C~GC 362 (595)
T TIGR03336 290 PVVEE-QVKALAGTAGLNIKVHGKEDGFL---PREGELNPDIVVNALAKF-GLAPSVTHE--KPVPKPLPVRPPSLCAGC 362 (595)
T ss_pred cHHHH-HHHHHHHhcCCCeEEecccCCcc---CcccCcCHHHHHHHHHHh-CCCcccccc--cccccccCCCCCCCCCCC
Confidence 11000 0000111 11222332221111 123346777777777543 211110000 000000111123334568
Q ss_pred CHHHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH-
Q 007917 392 RVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ- 470 (585)
Q Consensus 392 ~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~- 470 (585)
.++.++++|++.++++.+++.|+|++..|.. .|. .++. .+++||+++|+|+|+++|.|+++||+++|||+|+
T Consensus 363 p~~~~~~~l~~~l~~d~ivv~D~G~~~~~~~---~p~--~~~~--~~~~mG~~~~~AiGa~~a~p~~~Vv~i~GDG~f~~ 435 (595)
T TIGR03336 363 PHRATFYAMKKVADREAIFPSDIGCYTLGIQ---PPL--GTVD--TTLCMGASIGVASGLSKAGEKQRIVAFIGDSTFFH 435 (595)
T ss_pred CChHHHHHHHHhccCCcEEecCcchhhcccc---CCc--cccc--eeeccCchHHHHhhhhhcCCCCCEEEEeccchhhh
Confidence 8899999999999999999999999977642 121 1332 2589999999999999999999999999999998
Q ss_pred ----hHHHHHHhCCCeEEEEEeCCceeeeeee-cCC-C----CCCCCCCCHHHHHHHhcCCCCCccEEEecCH---HHHH
Q 007917 471 ----EISTMIRCGQRSIIFLINNGGYTIEVEI-HDG-P----YNVIKNWDYTGLVNAIHNGEGKCWTAKVRSE---DELT 537 (585)
Q Consensus 471 ----eL~ta~~~~lpv~ivV~NN~~~~~~~~~-~~~-~----~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~---~eL~ 537 (585)
||+|++++++|+++||+||++|++...+ ..+ . +....++||.++|++||+ ++.+|.++ +++.
T Consensus 436 ~g~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~-----~~~~v~~~~~l~~l~ 510 (595)
T TIGR03336 436 TGIPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISIEELCRASGV-----EFVEVVDPLNVKETI 510 (595)
T ss_pred cCHHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCCCCCCcCCCcCHHHHHHHcCC-----CEEEEeCcCCHHHHH
Confidence 9999999999999999999999984321 111 1 123467999999999999 89999887 4568
Q ss_pred HHHHHhhhcCCCCeEEEEEEcCCCC
Q 007917 538 EAMKTATGEQKDSLCFIEVFVHKDD 562 (585)
Q Consensus 538 ~al~~a~~~~~~gp~vIeV~v~~~~ 562 (585)
++|+++++ .++|+||++..+...
T Consensus 511 ~al~~a~~--~~gp~li~v~~~C~l 533 (595)
T TIGR03336 511 EVFKAALA--AEGVSVIIAKQPCVL 533 (595)
T ss_pred HHHHHHHh--cCCCEEEEEcccCcc
Confidence 99999986 789999999887654
No 65
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=100.00 E-value=9.7e-38 Score=290.29 Aligned_cols=164 Identities=32% Similarity=0.462 Sum_probs=147.6
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHH
Q 007917 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (585)
||++|+|++.|+++||++|||+||+.+.+|+++|.+++++++|.+|||++|++||+||+|++|+ +||++|+|||++|++
T Consensus 1 mt~~~~l~~~L~~~Gv~~vfgvpG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~ 80 (172)
T PF02776_consen 1 MTGAEALAEALKANGVTHVFGVPGSGNLPLLDALEKSPGIRFIPVRHEQGAAFMADGYARATGRPGVVIVTSGPGATNAL 80 (172)
T ss_dssp EEHHHHHHHHHHHTT-SEEEEE--GGGHHHHHHHHHTTTSEEEE-SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTH
T ss_pred CcHHHHHHHHHHHCCCeEEEEEeChhHhHHHHHhhhhcceeeecccCcchhHHHHHHHHHhhccceEEEeecccchHHHH
Confidence 6899999999999999999999999999999999987689999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhh-cCC
Q 007917 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALK-ESK 184 (585)
Q Consensus 106 ~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~-~~g 184 (585)
++|++|+.+++|||+|+|+++....+++ .++ +..||..++++++||++++.+++++++.+++|++.|.. ++|
T Consensus 81 ~~l~~A~~~~~Pvl~i~g~~~~~~~~~~-----~~q--~~~d~~~~~~~~~k~~~~v~~~~~~~~~~~~A~~~a~~~~~g 153 (172)
T PF02776_consen 81 TGLANAYADRIPVLVITGQRPSAGEGRG-----AFQ--QEIDQQSLFRPVTKWSYRVTSPDDLPEALDRAFRAATSGRPG 153 (172)
T ss_dssp HHHHHHHHTT-EEEEEEEESSGGGTTTT-----STT--SSTHHHHHHGGGSSEEEEECSGGGHHHHHHHHHHHHHHCSTS
T ss_pred HHHhhcccceeeEEEEecccchhhhccc-----ccc--cchhhcchhccccchhcccCCHHHHHHHHHHHHHHhccCCCc
Confidence 9999999999999999999998876643 222 24589999999999999999999999999999999966 479
Q ss_pred cEEEEecCCCCCC
Q 007917 185 PVYISISCNLPGI 197 (585)
Q Consensus 185 PV~i~iP~dv~~~ 197 (585)
||||+||.|++..
T Consensus 154 Pv~l~ip~dv~~~ 166 (172)
T PF02776_consen 154 PVYLEIPQDVQEA 166 (172)
T ss_dssp EEEEEEEHHHHTS
T ss_pred cEEEEcChhHhhC
Confidence 9999999999763
No 66
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=100.00 E-value=7.7e-34 Score=290.32 Aligned_cols=327 Identities=22% Similarity=0.244 Sum_probs=230.5
Q ss_pred CCCEEEecCCCChHHHHHhhh-cCCCCeEEecCchhhHHHhhhhhhhhcCc-c-EEEEeCCcc-hHHHHHHHHHhhhcCC
Q 007917 41 GAKDVFSVPGDFNLTLLDHLI-AEPELNLVGCCNELNAGYAADGYARSRGV-G-ACVVTFTVG-GLSVLNAIAGAYSENL 116 (585)
Q Consensus 41 Gv~~vFg~PG~~~~~l~~al~-~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~-v~~~t~GpG-~~n~~~gl~~A~~~~~ 116 (585)
||++++|+|.+...+|++.+. +.+++++|.+.||..|+.+|.||+..||+ + |.|-.||.| +.|.++.|.+....++
T Consensus 1 gi~~~~gvP~s~l~~~~~~~~~~~~~~~~i~~~~E~~av~iaaG~~latG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~i 80 (361)
T TIGR03297 1 GFDFFSGVPDSLLKPFCNYITDNNRDLRHVIAANEGAAVGLAAGAYLATGKRAAVYMQNSGLGNAVNPLTSLADTEVYDI 80 (361)
T ss_pred CceEEEeCcHHHHHHHHHHHHhcCCCceEEecCCchHHHHHHHHHHHhcCCccEEEEecCchhhhhhHHHhhccccccCc
Confidence 799999999999999999998 44589999999999999999999999987 5 556788888 6777777777788999
Q ss_pred cEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEe-cCcchhHHHHHHHHHHhhhcCCcEEEEecCCCC
Q 007917 117 PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVV-NNLGDAHELIDTAISTALKESKPVYISISCNLP 195 (585)
Q Consensus 117 Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v-~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~ 195 (585)
|+|+|.+.+..... .+...|...| + -...+++.+---...+ .+.++..+.+++|++.+.....|+.|-++.+.+
T Consensus 81 P~l~~i~~RG~~g~-~depqh~~~G--~--~t~~lL~~~~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~ 155 (361)
T TIGR03297 81 PLLLIVGWRGEPGV-HDEPQHVKQG--R--ITLSLLDALEIPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKGTF 155 (361)
T ss_pred CeeEEEecCCCCCC-CCCchhhHHh--H--HHHHHHHHcCCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEccccc
Confidence 99999999876521 1111111111 0 0123333221111122 233444444444444444444444444444332
Q ss_pred CCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccC
Q 007917 196 GIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGL 275 (585)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~ 275 (585)
.. . . .
T Consensus 156 ~~---~------~-------~----------------------------------------------------------- 160 (361)
T TIGR03297 156 AS---Y------K-------L----------------------------------------------------------- 160 (361)
T ss_pred cc---c------c-------c-----------------------------------------------------------
Confidence 10 0 0 0
Q ss_pred CCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecCCCccccccHHHHH
Q 007917 276 VPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFL 355 (585)
Q Consensus 276 ~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~~~~~~~~~~~~~l 355 (585)
+.. . .+
T Consensus 161 --------------------------------------------------~~~------------~-~~----------- 166 (361)
T TIGR03297 161 --------------------------------------------------KGE------------P-AN----------- 166 (361)
T ss_pred --------------------------------------------------ccC------------C-CC-----------
Confidence 000 0 00
Q ss_pred HHHHHHhccCccchhhhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEecCCcccccccccccc---C-CCe
Q 007917 356 SALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLP---E-NCG 431 (585)
Q Consensus 356 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~~~~~~~---~-~~~ 431 (585)
.....+++.++++.+.+.+++++++++|+|........++.. . ...
T Consensus 167 ------------------------------~~~~~~~r~~ai~~i~~~l~~~~iVV~~~G~~s~el~~~~~~~~~~~~~~ 216 (361)
T TIGR03297 167 ------------------------------PLPTLMTREEAIAAILDHLPDNTVIVSTTGKTSRELYELRDRIGQGHARD 216 (361)
T ss_pred ------------------------------CCcCCCCHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHhhcccccCCCCc
Confidence 000136788899999999999999999999865432222211 1 233
Q ss_pred eEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCC-CeEEEEEeCCceeeeeeecCCCCCCC
Q 007917 432 YEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQ-RSIIFLINNGGYTIEVEIHDGPYNVI 506 (585)
Q Consensus 432 ~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~l-pv~ivV~NN~~~~~~~~~~~~~~~~~ 506 (585)
++. +|+||+++|+|+|+++|+|+++|||++|||+|+ ||.|+.++++ |+++||+||++|++.. +..+..
T Consensus 217 f~~---~GsMG~a~p~AlG~ala~p~r~Vv~i~GDGsflm~~~eL~t~~~~~~~nli~VVlNNg~~~~~g----~q~~~~ 289 (361)
T TIGR03297 217 FLT---VGSMGHASQIALGLALARPDQRVVCLDGDGAALMHMGGLATIGTQGPANLIHVLFNNGAHDSVG----GQPTVS 289 (361)
T ss_pred eEe---echhhhHHHHHHHHHHHCCCCCEEEEEChHHHHHHHHHHHHHHHhCCCCeEEEEEcCccccccC----CcCCCC
Confidence 553 599999999999999999999999999999997 9999999996 8999999999998621 111222
Q ss_pred CCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCCh
Q 007917 507 KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTS 564 (585)
Q Consensus 507 ~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~~ 564 (585)
..+||.++|++||+. ++++|++.+||+++|+++++ .+||+||||++++...+
T Consensus 290 ~~~d~~~iA~a~G~~----~~~~v~~~~eL~~al~~a~~--~~gp~lIeV~v~~g~~~ 341 (361)
T TIGR03297 290 QHLDFAQIAKACGYA----KVYEVSTLEELETALTAASS--ANGPRLIEVKVRPGSRA 341 (361)
T ss_pred CCCCHHHHHHHCCCc----eEEEeCCHHHHHHHHHHHHh--CCCcEEEEEEecCCCcc
Confidence 578999999999961 57899999999999999986 78999999999986543
No 67
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=100.00 E-value=9.6e-35 Score=275.41 Aligned_cols=179 Identities=17% Similarity=0.268 Sum_probs=153.6
Q ss_pred CCCCHHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCc
Q 007917 389 EPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG 467 (585)
Q Consensus 389 ~~~~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDG 467 (585)
.++++.++++.|++.++++++++.|+|++..|. .++..+++.+|+.+.++|+|||++|+|||+++|.|+|+|||++|||
T Consensus 2 ~~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la~p~r~vv~i~GDG 81 (196)
T cd02013 2 NPMHPRQVLRELEKAMPEDAIVSTDIGNICSVANSYLRFEKPRSFIAPLSFGNCGYALPAIIGAKAAAPDRPVVAIAGDG 81 (196)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEcch
Confidence 468999999999999999999999999987654 4566666677999999999999999999999999999999999999
Q ss_pred hhH----hHHHHHHhCCCeEEEEEeCCceeeeee----ecCCC--CCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHH
Q 007917 468 SFQ----EISTMIRCGQRSIIFLINNGGYTIEVE----IHDGP--YNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELT 537 (585)
Q Consensus 468 sf~----eL~ta~~~~lpv~ivV~NN~~~~~~~~----~~~~~--~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~ 537 (585)
+|+ ||+|+++|++|+++||+||++|++.+. .++.. ..+++++||.++|++||+ ++++|++++||+
T Consensus 82 ~f~m~~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~el~ 156 (196)
T cd02013 82 AWGMSMMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESESFAKIAEACGA-----KGITVDKPEDVG 156 (196)
T ss_pred HHhccHHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCC-----EEEEECCHHHHH
Confidence 999 999999999999999999999998321 12222 234567999999999999 999999999999
Q ss_pred HHHHHhhh-cCCCCeEEEEEEcCCCCChHHHHHHHH
Q 007917 538 EAMKTATG-EQKDSLCFIEVFVHKDDTSKELLEWGS 572 (585)
Q Consensus 538 ~al~~a~~-~~~~gp~vIeV~v~~~~~~~~~~~~~~ 572 (585)
++|+++++ ...++|+||||.+++++.++....+.+
T Consensus 157 ~al~~a~~~~~~~~p~liev~v~~~~~~~~~~~~~~ 192 (196)
T cd02013 157 PALQKAIAMMAEGKTTVIEIVCDQELGDPFRRDALK 192 (196)
T ss_pred HHHHHHHhcCCCCCeEEEEEEeCcccCCchHHHhhh
Confidence 99999984 235899999999999987765554443
No 68
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=100.00 E-value=4.4e-34 Score=272.59 Aligned_cols=172 Identities=20% Similarity=0.267 Sum_probs=147.2
Q ss_pred CCCCCHHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcC
Q 007917 388 NEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGD 466 (585)
Q Consensus 388 ~~~~~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GD 466 (585)
+.++++.+++++|++.+|++++++.|+|++..|. .++..+++.+++.+.++|+|||++|+|||+++|+|+|+|||++||
T Consensus 5 ~~~l~~~~~~~~l~~~l~~d~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~vv~i~GD 84 (202)
T cd02006 5 DVPIKPQRVYEEMNKAFGRDVRYVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTVPAALGVAAADPDRQVVALSGD 84 (202)
T ss_pred CCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcCcCCCCeEEccCCccchhhhhHHHHhHHhhCCCCeEEEEEeC
Confidence 3469999999999999999999999999987664 456666666788888999999999999999999999999999999
Q ss_pred chhH----hHHHHHHhCCCeEEEEEeCCceeeeee----ecCCC-----CCC-------CCCCCHHHHHHHhcCCCCCcc
Q 007917 467 GSFQ----EISTMIRCGQRSIIFLINNGGYTIEVE----IHDGP-----YNV-------IKNWDYTGLVNAIHNGEGKCW 526 (585)
Q Consensus 467 Gsf~----eL~ta~~~~lpv~ivV~NN~~~~~~~~----~~~~~-----~~~-------~~~~d~~~la~a~G~~~~~~~ 526 (585)
|||+ ||+|++||++|+++||+||++|++.+. .+... +.. .+++||.++|++||+ +
T Consensus 85 G~f~m~~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~ 159 (202)
T cd02006 85 YDFQFMIEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGC-----K 159 (202)
T ss_pred hHhhccHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCccccccccccccccccCCCCCCHHHHHHHCCC-----E
Confidence 9999 999999999999999999999998321 11111 111 136899999999999 9
Q ss_pred EEEecCHHHHHHHHHHhhh--cCCCCeEEEEEEcCCCCCh
Q 007917 527 TAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVHKDDTS 564 (585)
Q Consensus 527 ~~~v~~~~eL~~al~~a~~--~~~~gp~vIeV~v~~~~~~ 564 (585)
+.+|++++||+++|+++++ ...++|+||||.+++++.+
T Consensus 160 ~~~v~~~~el~~al~~a~~~~~~~~~p~liev~i~~~~~~ 199 (202)
T cd02006 160 AIRVTKPEELAAAFEQAKKLMAEHRVPVVVEAILERVTNI 199 (202)
T ss_pred EEEECCHHHHHHHHHHHHHhcccCCCcEEEEEEecccccC
Confidence 9999999999999999984 1258999999999988764
No 69
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=100.00 E-value=8.6e-33 Score=258.91 Aligned_cols=176 Identities=48% Similarity=0.761 Sum_probs=152.1
Q ss_pred CCCHHHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchh
Q 007917 390 PLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF 469 (585)
Q Consensus 390 ~~~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf 469 (585)
|+++.++++.|++.++++++++.|+|++.+...++..+++.+++.+.++|+|||++|+|+|+++|.|+++|++++|||+|
T Consensus 1 ~l~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala~~~~~vv~i~GDG~f 80 (183)
T cd02005 1 PLTQARLWQQVQNFLKPNDILVAETGTSWFGALDLKLPKGTRFISQPLWGSIGYSVPAALGAALAAPDRRVILLVGDGSF 80 (183)
T ss_pred CCCHHHHHHHHHHhcCCCCEEEECCchHHHhhhhccCCCCCEEEeccchhhHhhhHHHHHHHHHhCCCCeEEEEECCchh
Confidence 57899999999999999999999999986545556666667799999999999999999999999999999999999999
Q ss_pred H----hHHHHHHhCCCeEEEEEeCCceeeeeeecCC--CCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHh
Q 007917 470 Q----EISTMIRCGQRSIIFLINNGGYTIEVEIHDG--PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTA 543 (585)
Q Consensus 470 ~----eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~--~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a 543 (585)
+ ||+|++++++|+++||+||++|++.+..+.. .+.++.++||.++|++||+ .+.+++.+|++.+||+++|+++
T Consensus 81 ~~~~~el~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~~~~~~~d~~~ia~a~G~-~~~~~~~~v~~~~el~~al~~a 159 (183)
T cd02005 81 QMTVQELSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYNDIANWNYTKLPEVFGG-GGGGLSFRVKTEGELDEALKDA 159 (183)
T ss_pred hccHHHHHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCcccCCCCCHHHHHHHhCC-CccccEEEecCHHHHHHHHHHH
Confidence 9 9999999999999999999999985444322 4555667999999999991 0011899999999999999999
Q ss_pred hhcCCCCeEEEEEEcCCCCChHHH
Q 007917 544 TGEQKDSLCFIEVFVHKDDTSKEL 567 (585)
Q Consensus 544 ~~~~~~gp~vIeV~v~~~~~~~~~ 567 (585)
++ ..++|+||||.+++++.++.+
T Consensus 160 ~~-~~~~p~liev~~~~~~~~~~~ 182 (183)
T cd02005 160 LF-NRDKLSLIEVILPKDDAPEAL 182 (183)
T ss_pred Hh-cCCCcEEEEEEcCcccCCccc
Confidence 84 257999999999999988654
No 70
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=100.00 E-value=9.2e-33 Score=257.27 Aligned_cols=165 Identities=17% Similarity=0.248 Sum_probs=143.7
Q ss_pred HHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH-
Q 007917 393 VNVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ- 470 (585)
Q Consensus 393 ~~~~~~~L~~~l~~~~ii~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~- 470 (585)
|.+++++|++.++++++++.|+|++..|. .++...++.+++.+.++|+|||++|+|+|+++|+|+++||+++|||||+
T Consensus 1 p~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f~m 80 (177)
T cd02010 1 PQRIVHDLRAVMGDDDIVLLDVGAHKIWMARYYRTYAPNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSGDGGFMM 80 (177)
T ss_pred CHHHHHHHHHHCCCCcEEEecCcHHHHHHHHhCCcCCCCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEcchHHHh
Confidence 35789999999999999999999987664 3455555567999999999999999999999999999999999999998
Q ss_pred ---hHHHHHHhCCCeEEEEEeCCceeeeeee----cC-CCCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHH
Q 007917 471 ---EISTMIRCGQRSIIFLINNGGYTIEVEI----HD-GPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKT 542 (585)
Q Consensus 471 ---eL~ta~~~~lpv~ivV~NN~~~~~~~~~----~~-~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~ 542 (585)
||+|++|+++|+++||+||++|++.+.. +. ..+.++.++||.++|++||+ ++.+|++++||+++|++
T Consensus 81 ~~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~ 155 (177)
T cd02010 81 NSQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRDSGVDFGNPDFVKYAESFGA-----KGYRIESADDLLPVLER 155 (177)
T ss_pred HHHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCcccCcCCCCCHHHHHHHCCC-----EEEEECCHHHHHHHHHH
Confidence 9999999999999999999999983211 11 13345567899999999999 99999999999999999
Q ss_pred hhhcCCCCeEEEEEEcCCCCCh
Q 007917 543 ATGEQKDSLCFIEVFVHKDDTS 564 (585)
Q Consensus 543 a~~~~~~gp~vIeV~v~~~~~~ 564 (585)
+++ .++|+||||.+++++.+
T Consensus 156 a~~--~~~p~liev~~~~~~~~ 175 (177)
T cd02010 156 ALA--ADGVHVIDCPVDYSENI 175 (177)
T ss_pred HHh--CCCCEEEEEEecccccC
Confidence 996 78999999999987654
No 71
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=100.00 E-value=1.6e-32 Score=251.38 Aligned_cols=153 Identities=28% Similarity=0.371 Sum_probs=142.3
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHHHHHH
Q 007917 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIA 109 (585)
Q Consensus 31 ~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~gl~ 109 (585)
++|++.|+++||+++||+||+.+.+|++++. ++++++|.++||.+|++||+||+|++|+ ++|++|+|||++|+++++.
T Consensus 1 ~~i~~~L~~~Gv~~vfg~pg~~~~~l~~~~~-~~~~~~i~~~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~ 79 (155)
T cd07035 1 DALVEALKAEGVDHVFGVPGGAILPLLDALA-RSGIRYILVRHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLA 79 (155)
T ss_pred CHHHHHHHHcCCCEEEECCCCchHHHHHHhc-cCCCEEEEeCCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHH
Confidence 4799999999999999999999999999998 4689999999999999999999999998 9999999999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-CCcEEE
Q 007917 110 GAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SKPVYI 188 (585)
Q Consensus 110 ~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~gPV~i 188 (585)
+|+.+++|||+|+|+++....+++. .|..||..+++++|||+.++.+++++.+.+++|++.|.++ +|||||
T Consensus 80 ~A~~~~~Pll~i~~~~~~~~~~~~~--------~q~~d~~~~~~~~~~~~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l 151 (155)
T cd07035 80 NAYLDSIPLLVITGQRPTAGEGRGA--------FQEIDQVALFRPITKWAYRVTSPEEIPEALRRAFRIALSGRPGPVAL 151 (155)
T ss_pred HHHhhCCCEEEEeCCCccccccCCc--------ccccCHHHHHHHHhceEEEcCCHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 9999999999999999988665531 2346889999999999999999999999999999999997 699999
Q ss_pred EecC
Q 007917 189 SISC 192 (585)
Q Consensus 189 ~iP~ 192 (585)
+||.
T Consensus 152 ~ip~ 155 (155)
T cd07035 152 DLPK 155 (155)
T ss_pred EecC
Confidence 9984
No 72
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=100.00 E-value=5.6e-33 Score=265.23 Aligned_cols=172 Identities=23% Similarity=0.390 Sum_probs=147.0
Q ss_pred HHHHHHHHhhCCCCCEEEecCCccccccc-cccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH--
Q 007917 394 NVLFKHIQDMLSGDTAVIAETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ-- 470 (585)
Q Consensus 394 ~~~~~~L~~~l~~~~ii~~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~-- 470 (585)
.+++++|++.++++++++.|+|++..|.. +++..++.+++.+.++|+|||++|+|||+++|+|+++||+++|||+|+
T Consensus 2 ~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la~p~~~vv~i~GDGsf~m~ 81 (205)
T cd02003 2 TEVLGALNEAIGDDDVVINAAGSLPGDLHKLWRARTPGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDGSYLML 81 (205)
T ss_pred hhHHHHHHHhCCCCCEEEECCCcchHHHHHhCCcCCCCcEEcCCCcchhhhHHHHHHHHHHhCCCCeEEEEEccchhhcc
Confidence 36889999999999999999999877653 455556667999999999999999999999999999999999999999
Q ss_pred --hHHHHHHhCCCeEEEEEeCCceeeeeee----cCCC----C-----------CCCCCCCHHHHHHHhcCCCCCccEEE
Q 007917 471 --EISTMIRCGQRSIIFLINNGGYTIEVEI----HDGP----Y-----------NVIKNWDYTGLVNAIHNGEGKCWTAK 529 (585)
Q Consensus 471 --eL~ta~~~~lpv~ivV~NN~~~~~~~~~----~~~~----~-----------~~~~~~d~~~la~a~G~~~~~~~~~~ 529 (585)
||+|+++|++|+++||+||++|++.+.. +... + ...+++||.++|++||+ ++.+
T Consensus 82 ~~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~-----~~~~ 156 (205)
T cd02003 82 HSEIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGA-----RVEK 156 (205)
T ss_pred HHHHHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCC-----EEEE
Confidence 9999999999999999999999983211 1111 1 12357899999999999 9999
Q ss_pred ecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChHHHHHHHH
Q 007917 530 VRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGS 572 (585)
Q Consensus 530 v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~~~~~~~~~~ 572 (585)
|++++||+++|+++++ .++|+||||.+++.+.++....|++
T Consensus 157 v~~~~el~~al~~a~~--~~gp~lIeV~v~~~~~~~~~~~~~~ 197 (205)
T cd02003 157 VKTIEELKAALAKAKA--SDRTTVIVIKTDPKSMTPGYGSWWD 197 (205)
T ss_pred ECCHHHHHHHHHHHHh--CCCCEEEEEEeeccccCCCCCCeEe
Confidence 9999999999999986 7899999999999887776555443
No 73
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=100.00 E-value=2e-32 Score=257.95 Aligned_cols=168 Identities=26% Similarity=0.393 Sum_probs=145.8
Q ss_pred CCHHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchh
Q 007917 391 LRVNVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF 469 (585)
Q Consensus 391 ~~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf 469 (585)
+++.+++++|++.+|++++++.|+|++..|. .++..+++.+|+.+.++|+|||++|+|||+++|.|+++||+++|||+|
T Consensus 1 ~~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f 80 (186)
T cd02015 1 IKPQEVIKELSELTPGDAIVTTDVGQHQMWAAQYYRFKKPRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVICIDGDGSF 80 (186)
T ss_pred CCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEeCCCccchhchHHHHHHHHHhCCCCeEEEEEcccHH
Confidence 4688999999999999999999999986554 456666667799999999999999999999999999999999999999
Q ss_pred H----hHHHHHHhCCCeEEEEEeCCceeeeeee----cCCCCC--C-CCCCCHHHHHHHhcCCCCCccEEEecCHHHHHH
Q 007917 470 Q----EISTMIRCGQRSIIFLINNGGYTIEVEI----HDGPYN--V-IKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTE 538 (585)
Q Consensus 470 ~----eL~ta~~~~lpv~ivV~NN~~~~~~~~~----~~~~~~--~-~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~ 538 (585)
+ ||+|++++++|+++||+||++|++.+.. +.+.+. . .+++||.++|++||+ ++++|++.+||++
T Consensus 81 ~~~~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~ 155 (186)
T cd02015 81 QMNIQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRYSHTTLDSNPDFVKLAEAYGI-----KGLRVEKPEELEA 155 (186)
T ss_pred hccHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCceeeccCCCCCCHHHHHHHCCC-----ceEEeCCHHHHHH
Confidence 9 9999999999999999999999983211 122221 2 357899999999999 9999999999999
Q ss_pred HHHHhhhcCCCCeEEEEEEcCCCCChH
Q 007917 539 AMKTATGEQKDSLCFIEVFVHKDDTSK 565 (585)
Q Consensus 539 al~~a~~~~~~gp~vIeV~v~~~~~~~ 565 (585)
+|+++++ .++|+||||.+++++.+.
T Consensus 156 al~~a~~--~~~p~liev~~~~~~~~~ 180 (186)
T cd02015 156 ALKEALA--SDGPVLLDVLVDPEENVL 180 (186)
T ss_pred HHHHHHh--CCCCEEEEEEeCCCcccC
Confidence 9999986 789999999999877543
No 74
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.97 E-value=9e-32 Score=250.50 Aligned_cols=160 Identities=21% Similarity=0.178 Sum_probs=138.9
Q ss_pred CHHHHHHHHHhhCCCCCEEEecCCccccccc-cccc-cCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchh
Q 007917 392 RVNVLFKHIQDMLSGDTAVIAETGDSWFNCQ-KLRL-PENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF 469 (585)
Q Consensus 392 ~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~~-~~~~-~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf 469 (585)
+...++++|++.+|++.+++.|.|++..|.. +++. +++.+++.+.++++|||++|+|||+++|. +|+||+++|||||
T Consensus 2 ~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~aiGa~la~-~~~Vv~i~GDGsf 80 (175)
T cd02009 2 TEPALARALPDHLPEGSQLFVGNSMPIRDLDLFALPSDKTVRVFANRGASGIDGTLSTALGIALAT-DKPTVLLTGDLSF 80 (175)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCHHHHHHHHccCccCCCceEEecCCccchhhHHHHHHHHHhcC-CCCEEEEEehHHH
Confidence 3567999999999999999999999987754 4555 56667999999999999999999999998 9999999999999
Q ss_pred H----hHHHHHHhCCCeEEEEEeCCceeeeeeec----CCCCCC-C---CCCCHHHHHHHhcCCCCCccEEEecCHHHHH
Q 007917 470 Q----EISTMIRCGQRSIIFLINNGGYTIEVEIH----DGPYNV-I---KNWDYTGLVNAIHNGEGKCWTAKVRSEDELT 537 (585)
Q Consensus 470 ~----eL~ta~~~~lpv~ivV~NN~~~~~~~~~~----~~~~~~-~---~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~ 537 (585)
+ ||+|++|+++|+++||+||++|++.+... ...+.. . .++||.++|++||+ ++++|++++||+
T Consensus 81 ~m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~-----~~~~v~~~~el~ 155 (175)
T cd02009 81 LHDLNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDEFERLFGTPQGLDFEHLAKAYGL-----EYRRVSSLDELE 155 (175)
T ss_pred HHhHHHHHhccccCCCeEEEEEECCCCchheeccCCcccchhhhhhcCCCCCCHHHHHHHcCC-----CeeeCCCHHHHH
Confidence 9 99999999999999999999999843221 112211 1 37899999999999 999999999999
Q ss_pred HHHHHhhhcCCCCeEEEEEEcC
Q 007917 538 EAMKTATGEQKDSLCFIEVFVH 559 (585)
Q Consensus 538 ~al~~a~~~~~~gp~vIeV~v~ 559 (585)
++|+++++ .++|+||||.++
T Consensus 156 ~al~~a~~--~~~p~lIev~v~ 175 (175)
T cd02009 156 QALESALA--QDGPHVIEVKTD 175 (175)
T ss_pred HHHHHHHh--CCCCEEEEEeCC
Confidence 99999986 789999999985
No 75
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.97 E-value=3.4e-31 Score=247.66 Aligned_cols=168 Identities=18% Similarity=0.269 Sum_probs=147.1
Q ss_pred CCCHHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCch
Q 007917 390 PLRVNVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGS 468 (585)
Q Consensus 390 ~~~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGs 468 (585)
++++.+++++|++.++++++++.|+|++..+. .++..+++.+++.+.++|+|||++|+|+|+++|+|+++||+++||||
T Consensus 1 ~~~~~~~~~~l~~~~~~~~ii~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~ 80 (178)
T cd02014 1 PIHPERVAAELNKRAPDDAIFTIDVGNVTVWAARHLRMNGKQRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGG 80 (178)
T ss_pred CCCHHHHHHHHHhHCCCCeEEEEcCcHHHHHHHHhcccCCCCcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchH
Confidence 36889999999999999999999999987654 45666666779999999999999999999999999999999999999
Q ss_pred hH----hHHHHHHhCCCeEEEEEeCCceeeeee----ecCCC-CCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHH
Q 007917 469 FQ----EISTMIRCGQRSIIFLINNGGYTIEVE----IHDGP-YNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEA 539 (585)
Q Consensus 469 f~----eL~ta~~~~lpv~ivV~NN~~~~~~~~----~~~~~-~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~a 539 (585)
|+ ||+|++++++|+++||+||++|++.+. ..... .++++++||.++|++||+ +++++++++||+++
T Consensus 81 f~~~~~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~-----~~~~v~~~~el~~~ 155 (178)
T cd02014 81 FAMLMGDLITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPEFGVDLPNPDFAKIAEAMGI-----KGIRVEDPDELEAA 155 (178)
T ss_pred HHhhHHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCceeccCCCCCHHHHHHHCCC-----eEEEeCCHHHHHHH
Confidence 99 999999999999999999999998321 11112 234567899999999999 99999999999999
Q ss_pred HHHhhhcCCCCeEEEEEEcCCCCCh
Q 007917 540 MKTATGEQKDSLCFIEVFVHKDDTS 564 (585)
Q Consensus 540 l~~a~~~~~~gp~vIeV~v~~~~~~ 564 (585)
|+++++ .++|+||||.+++++.|
T Consensus 156 l~~a~~--~~~p~liev~~~~~~~~ 178 (178)
T cd02014 156 LDEALA--ADGPVVIDVVTDPNEPP 178 (178)
T ss_pred HHHHHh--CCCCEEEEEEeCCCCCC
Confidence 999986 78999999999988754
No 76
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.97 E-value=5.6e-31 Score=245.11 Aligned_cols=160 Identities=23% Similarity=0.346 Sum_probs=139.2
Q ss_pred HHHHHHHHHhhCCCCCEEEecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH-
Q 007917 393 VNVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ- 470 (585)
Q Consensus 393 ~~~~~~~L~~~l~~~~ii~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~- 470 (585)
|.+++++|++.+|++++++.|+|++..|. .++..+++.+++.+.++|+||+++|+|||++++.|+++|+|++|||+|+
T Consensus 1 p~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lp~AiGa~la~~~~~vv~i~GDG~f~~ 80 (172)
T cd02004 1 PYRVLHELQEALPDDAIIVSDGGNTMDWARYILRPRKPRHRLDAGTFGTLGVGLGYAIAAALARPDKRVVLVEGDGAFGF 80 (172)
T ss_pred CHHHHHHHHHHCCCCcEEEEcCchHHHHHHHHccccCCCcEecCCCCCcccchHHHHHHHHHhCCCCeEEEEEcchhhcC
Confidence 45789999999999999999999886554 4455555566898899999999999999999999999999999999999
Q ss_pred ---hHHHHHHhCCCeEEEEEeCCceeeeeeecC-----C--CCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHH
Q 007917 471 ---EISTMIRCGQRSIIFLINNGGYTIEVEIHD-----G--PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAM 540 (585)
Q Consensus 471 ---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~-----~--~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al 540 (585)
||+|++++++|+++||+||++|++....+. . .+.+++.+||.++|++||+ ++.+|++.+||+++|
T Consensus 81 ~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~-----~~~~v~~~~el~~al 155 (172)
T cd02004 81 SGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLGLPVTTLLPDTRYDLVAEAFGG-----KGELVTTPEELKPAL 155 (172)
T ss_pred CHHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCCCceeccCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHH
Confidence 999999999999999999999998432211 1 2234578999999999999 999999999999999
Q ss_pred HHhhhcCCCCeEEEEEEcC
Q 007917 541 KTATGEQKDSLCFIEVFVH 559 (585)
Q Consensus 541 ~~a~~~~~~gp~vIeV~v~ 559 (585)
+++++ .++|+||||+++
T Consensus 156 ~~a~~--~~~p~liev~i~ 172 (172)
T cd02004 156 KRALA--SGKPALINVIID 172 (172)
T ss_pred HHHHH--cCCCEEEEEEcC
Confidence 99986 789999999985
No 77
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=99.97 E-value=2.4e-30 Score=238.18 Aligned_cols=154 Identities=19% Similarity=0.081 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhc----CCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcchHHH
Q 007917 29 LGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIA----EPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSV 104 (585)
Q Consensus 29 ~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~----~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~n~ 104 (585)
++|+|++.|+++||+++||+||+.+.++++++.+ .++|++|.++||++|++||+||+|.+++ +|++|+|||++|+
T Consensus 1 g~e~i~~~L~~~gv~~vfg~PG~~~~~~~~~l~~~~~~~~~i~~i~~~~E~~A~~~A~g~~r~~~~-v~~~~~gpG~~n~ 79 (160)
T cd07034 1 GNEAVARGALAAGVDVVAAYPITPSTEIAETLAKAVLGELGGVVVQAESEHAAAEAAIGASAAGAR-AMTATSGPGLNLM 79 (160)
T ss_pred ChHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHHHHhccCCCcEEEEeCCHHHHHHHHHHHHhhCCc-EEEeeCcchHHHH
Confidence 4799999999999999999999999999999964 4689999999999999999999998888 9999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCC
Q 007917 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (585)
Q Consensus 105 ~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~g 184 (585)
+++|.+|+.+++|||+|+|+++....+.. + .. .+..|+..++++ +||+.++.+++++++++++|++.|.++++
T Consensus 80 ~~~l~~a~~~~~P~v~i~g~~~~~~~~~~---~-~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~a~~~~~ 152 (160)
T cd07034 80 AEALYLAAGAELPLVIVVAQRPGPSTGLP---K-PD--QSDLMAARYGGH-PWPVLAPSSVQEAFDLALEAFELAEKYRL 152 (160)
T ss_pred HHHHHHHHhCCCCEEEEEeeCCCCCCCCC---C-cC--cHHHHHHHhCCC-CEEEEeCCCHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999988744420 0 11 234678899999 99999999999999999999999999889
Q ss_pred cEEEEe
Q 007917 185 PVYISI 190 (585)
Q Consensus 185 PV~i~i 190 (585)
||+|.+
T Consensus 153 Pv~l~~ 158 (160)
T cd07034 153 PVIVLS 158 (160)
T ss_pred CEEEEc
Confidence 999975
No 78
>PRK06163 hypothetical protein; Provisional
Probab=99.97 E-value=1.2e-29 Score=239.16 Aligned_cols=161 Identities=22% Similarity=0.261 Sum_probs=135.5
Q ss_pred CCCCCCHHHHHHHHHhhCCCCCEEEecCCccc--cccccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE
Q 007917 387 QNEPLRVNVLFKHIQDMLSGDTAVIAETGDSW--FNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI 464 (585)
Q Consensus 387 ~~~~~~~~~~~~~L~~~l~~~~ii~~d~G~~~--~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~ 464 (585)
....++..+++++|++.++++++++.|+|++. .|... ..+ .+++ .+|+|||++|+|||+++|+|+++|||++
T Consensus 9 ~~~~~~~~~~i~~l~~~l~~~~~iv~D~G~~~~~~~~~~-~~~--~~~~---~~GsMG~glpaAiGaalA~p~r~Vv~i~ 82 (202)
T PRK06163 9 NAKVMNRFDLTCRLVAKLKDEEAVIGGIGNTNFDLWAAG-QRP--QNFY---MLGSMGLAFPIALGVALAQPKRRVIALE 82 (202)
T ss_pred CCCCcCHHHHHHHHHHhcCCCCEEEECCCccHHHHHHhh-cCC--CCeE---eecccccHHHHHHHHHHhCCCCeEEEEE
Confidence 34568899999999999999999999999743 44432 122 2355 3899999999999999999999999999
Q ss_pred cCchhH----hHHHHHHh-CCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHhcCCCCCcc-EEEecCHHHHHH
Q 007917 465 GDGSFQ----EISTMIRC-GQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCW-TAKVRSEDELTE 538 (585)
Q Consensus 465 GDGsf~----eL~ta~~~-~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~-~~~v~~~~eL~~ 538 (585)
|||||+ ||+|++++ ++|+++||+||++|++... ..+...+++||.++|++||+ + +++|++.+||++
T Consensus 83 GDG~f~m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~---~~~~~~~~~Df~~lA~a~G~-----~~~~~v~~~~el~~ 154 (202)
T PRK06163 83 GDGSLLMQLGALGTIAALAPKNLTIIVMDNGVYQITGG---QPTLTSQTVDVVAIARGAGL-----ENSHWAADEAHFEA 154 (202)
T ss_pred cchHHHHHHHHHHHHHHhcCCCeEEEEEcCCchhhcCC---ccCCCCCCCCHHHHHHHCCC-----ceEEEeCCHHHHHH
Confidence 999998 99999987 6899999999999998321 12333367999999999999 7 679999999999
Q ss_pred HHHHhhhcCCCCeEEEEEEcCCCCC
Q 007917 539 AMKTATGEQKDSLCFIEVFVHKDDT 563 (585)
Q Consensus 539 al~~a~~~~~~gp~vIeV~v~~~~~ 563 (585)
+|+++++ .++|+||||.+++...
T Consensus 155 al~~a~~--~~~p~lIeV~i~~~~~ 177 (202)
T PRK06163 155 LVDQALS--GPGPSFIAVRIDDKPG 177 (202)
T ss_pred HHHHHHh--CCCCEEEEEEecCCCC
Confidence 9999986 7899999999997654
No 79
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.96 E-value=1.7e-29 Score=236.82 Aligned_cols=160 Identities=27% Similarity=0.392 Sum_probs=137.2
Q ss_pred CCHHHHHHHHHhhCCCCCEEEecCCccccccc-cccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchh
Q 007917 391 LRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF 469 (585)
Q Consensus 391 ~~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf 469 (585)
+++.+++++|++.+|++++++.|+|++..|.. +++..++.+++.+.+ |+||+++|+|+|+++|.|+++|++++|||+|
T Consensus 1 ~~~~~~~~~l~~~l~~~~~iv~d~g~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lp~aiGaala~~~~~vv~i~GDG~f 79 (178)
T cd02002 1 LTPEYLAAALAAALPEDAIIVDEAVTNGLPLRDQLPLTRPGSYFTLRG-GGLGWGLPAAVGAALANPDRKVVAIIGDGSF 79 (178)
T ss_pred CCHHHHHHHHHhhCCCCeEEEecCCcccHHHHHhcccCCCCCeeccCC-ccccchHHHHHHHHhcCCCCeEEEEEcCchh
Confidence 46889999999999999999999998876654 344445566888888 9999999999999999999999999999999
Q ss_pred H----hHHHHHHhCCCeEEEEEeCCceeeeeee----cC------C-CCC--CCCCCCHHHHHHHhcCCCCCccEEEecC
Q 007917 470 Q----EISTMIRCGQRSIIFLINNGGYTIEVEI----HD------G-PYN--VIKNWDYTGLVNAIHNGEGKCWTAKVRS 532 (585)
Q Consensus 470 ~----eL~ta~~~~lpv~ivV~NN~~~~~~~~~----~~------~-~~~--~~~~~d~~~la~a~G~~~~~~~~~~v~~ 532 (585)
+ ||+|++++++|+++||+||++|++.... +. . ... ..+.+||.++|++||+ ++++|++
T Consensus 80 ~~~~~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~ 154 (178)
T cd02002 80 MYTIQALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGV-----EAERVET 154 (178)
T ss_pred hccHHHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHcCC-----ceEEeCC
Confidence 9 9999999999999999999999983211 11 0 111 2356899999999999 9999999
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEEEEc
Q 007917 533 EDELTEAMKTATGEQKDSLCFIEVFV 558 (585)
Q Consensus 533 ~~eL~~al~~a~~~~~~gp~vIeV~v 558 (585)
++||+++|+++++ .++|+||||++
T Consensus 155 ~~el~~al~~a~~--~~~p~vi~v~v 178 (178)
T cd02002 155 PEELDEALREALA--EGGPALIEVVV 178 (178)
T ss_pred HHHHHHHHHHHHh--CCCCEEEEEEC
Confidence 9999999999986 78999999975
No 80
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.96 E-value=1.7e-28 Score=223.49 Aligned_cols=151 Identities=17% Similarity=0.143 Sum_probs=127.5
Q ss_pred HHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH---
Q 007917 394 NVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ--- 470 (585)
Q Consensus 394 ~~~~~~L~~~l~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~--- 470 (585)
+.++++|.+.+ ++++++.|+|++..+.. +....+.+|+. +|+||+++|+|||+++|.| ++||+++|||||+
T Consensus 2 ~~~~~~l~~~l-~d~~vv~d~G~~~~~~~-~~~~~~~~~~~---~gsmG~~lp~AiGa~~a~~-~~Vv~i~GDG~f~m~~ 75 (157)
T cd02001 2 IAAIAEIIEAS-GDTPIVSTTGYASRELY-DVQDRDGHFYM---LGSMGLAGSIGLGLALGLS-RKVIVVDGDGSLLMNP 75 (157)
T ss_pred HHHHHHHHHhC-CCCEEEeCCCHhHHHHH-HhhcCCCCEEe---ecchhhHHHHHHHHHhcCC-CcEEEEECchHHHhcc
Confidence 45788999999 79999999999876652 22233344664 9999999999999999987 8999999999997
Q ss_pred -hHHHHHHh-CCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCC
Q 007917 471 -EISTMIRC-GQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQK 548 (585)
Q Consensus 471 -eL~ta~~~-~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~ 548 (585)
||+|++++ ++|+++||+||++|++..... .+ ..++||.++|++||+ ++++|++++||+++|+++++ .
T Consensus 76 ~el~t~~~~~~~~i~~vV~nN~~~g~~~~~~--~~--~~~~d~~~lA~a~G~-----~~~~v~~~~el~~al~~a~~--~ 144 (157)
T cd02001 76 GVLLTAGEFTPLNLILVVLDNRAYGSTGGQP--TP--SSNVNLEAWAAACGY-----LVLSAPLLGGLGSEFAGLLA--T 144 (157)
T ss_pred cHHHHHHHhcCCCEEEEEEeCccccccCCcC--CC--CCCCCHHHHHHHCCC-----ceEEcCCHHHHHHHHHHHHh--C
Confidence 99999999 599999999999999842111 11 136899999999999 89999999999999999996 7
Q ss_pred CCeEEEEEEcCCC
Q 007917 549 DSLCFIEVFVHKD 561 (585)
Q Consensus 549 ~gp~vIeV~v~~~ 561 (585)
++|+||||.+++.
T Consensus 145 ~gp~vi~v~i~~~ 157 (157)
T cd02001 145 TGPTLLHAPIAPG 157 (157)
T ss_pred CCCEEEEEEecCC
Confidence 8999999999763
No 81
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.96 E-value=1.7e-28 Score=224.55 Aligned_cols=154 Identities=29% Similarity=0.360 Sum_probs=140.6
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcchHHHHHHHHH
Q 007917 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAG 110 (585)
Q Consensus 31 ~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~gl~~ 110 (585)
++|++.|+++||+++||+||+...++++++.+.++++++.++||++|++||+||+|++++++|++++|||++|+++++.+
T Consensus 1 ~~~~~~l~~~gv~~vfg~pg~~~~~l~~~~~~~~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~~ 80 (154)
T cd06586 1 AAFAEVLTAWGVRHVFGYPGDEISSLLDALREGDKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLAD 80 (154)
T ss_pred ChHHHHHHHcCCCEEEEcCCcchHHHHHHHhccCCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHHH
Confidence 47899999999999999999999999999987678999999999999999999999999899999999999999999999
Q ss_pred hhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCCcEEEEe
Q 007917 111 AYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISI 190 (585)
Q Consensus 111 A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~i 190 (585)
|+.+++|||+|+++++....+.+ .+|..++..++++++||...+.++++.++.+.+|++.|.+++|||+|++
T Consensus 81 a~~~~~Pvl~i~~~~~~~~~~~~--------~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~i 152 (154)
T cd06586 81 AAAEHLPVVFLIGARGISAQAKQ--------TFQSMFDLGMYRSIPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRL 152 (154)
T ss_pred HHhcCCCEEEEeCCCChhhhccC--------cccccCHHHHHHHhhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence 99999999999999887643332 1234578899999999999999999999999999999988899999999
Q ss_pred cC
Q 007917 191 SC 192 (585)
Q Consensus 191 P~ 192 (585)
|.
T Consensus 153 p~ 154 (154)
T cd06586 153 PR 154 (154)
T ss_pred cC
Confidence 84
No 82
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.96 E-value=6e-28 Score=224.81 Aligned_cols=154 Identities=24% Similarity=0.302 Sum_probs=127.5
Q ss_pred HHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH---
Q 007917 394 NVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ--- 470 (585)
Q Consensus 394 ~~~~~~L~~~l~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~--- 470 (585)
..++++|++.+| +++++.|+|.+......+ .+.+.+++. +|+||+++|+|+|+++|+ +++|||++|||+|+
T Consensus 2 ~~~~~~l~~~l~-d~iiv~d~G~~~~~~~~~-~~~~~~~~~---~gsmG~~lpaAiGa~la~-~~~Vv~i~GDG~f~m~~ 75 (181)
T TIGR03846 2 IDAIRAIASYLE-DELVVSNIGVPSKELYAI-RDRPLNFYM---LGSMGLASSIGLGLALAT-DRTVIVIDGDGSLLMNL 75 (181)
T ss_pred HHHHHHHHHhCC-CCEEEecCCHhHHHHHhh-hcCCCCeee---ccccccHHHHHHHHHHcC-CCcEEEEEcchHHHhhh
Confidence 458899999998 999999999875432222 123334553 899999999999999999 99999999999999
Q ss_pred -hHHHHHHhC-CCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEE-ecCHHHHHHHHHHhhhcC
Q 007917 471 -EISTMIRCG-QRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAK-VRSEDELTEAMKTATGEQ 547 (585)
Q Consensus 471 -eL~ta~~~~-lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~-v~~~~eL~~al~~a~~~~ 547 (585)
||+|+++++ +|+++||+||++|++.... .... .+++||.++|++||+ ++.+ |++++||+++|+ +++
T Consensus 76 ~el~ta~~~~~~pv~~vV~NN~~yg~~~~q--~~~~-~~~~d~~~lA~a~G~-----~~~~~v~~~~~l~~al~-a~~-- 144 (181)
T TIGR03846 76 GVLPTIAAESPKNLILVILDNGAYGSTGNQ--PTPA-SRRTDLELVAKAAGI-----RNVEKVADEEELRDALK-ALA-- 144 (181)
T ss_pred hHHHHHHHhCCCCeEEEEEeCCccccccCc--CCCC-CCCCCHHHHHHHCCC-----CeEEEeCCHHHHHHHHH-HHc--
Confidence 999999999 5999999999999984311 1111 147899999999999 8888 999999999997 775
Q ss_pred CCCeEEEEEEcCCCCCh
Q 007917 548 KDSLCFIEVFVHKDDTS 564 (585)
Q Consensus 548 ~~gp~vIeV~v~~~~~~ 564 (585)
.++|+||||.+++++.+
T Consensus 145 ~~~p~li~v~~~~~~~~ 161 (181)
T TIGR03846 145 MKGPTFIHVKVKPGNAK 161 (181)
T ss_pred CCCCEEEEEEeCCCCCC
Confidence 78999999999987753
No 83
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.95 E-value=8.3e-28 Score=225.51 Aligned_cols=157 Identities=25% Similarity=0.262 Sum_probs=129.8
Q ss_pred HHHHHHHHhhCCCCCEEEecCCcccccccccc-cc---CCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchh
Q 007917 394 NVLFKHIQDMLSGDTAVIAETGDSWFNCQKLR-LP---ENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF 469 (585)
Q Consensus 394 ~~~~~~L~~~l~~~~ii~~d~G~~~~~~~~~~-~~---~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf 469 (585)
..++++|++.+|++++++.|.|.++...+.+. .+ .+.+|+.+ |+|||++|+|+|+++|.|+++||+++|||+|
T Consensus 2 ~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~---g~mG~~lpaAiGaala~p~~~Vv~i~GDG~f 78 (188)
T cd03371 2 EDAIEIVLSRAPATAAVVSTTGMTSRELFELRDRPGGGHAQDFLTV---GSMGHASQIALGIALARPDRKVVCIDGDGAA 78 (188)
T ss_pred HHHHHHHHhhcCCCCEEEECCCcchHHHHHhhcCCCCCccCceeec---CccccHHHHHHHHHHhCCCCcEEEEeCCcHH
Confidence 35789999999999999999997764222222 22 12346543 9999999999999999999999999999999
Q ss_pred H----hHHHHHHhCC-CeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHhcCCCCCccE-EEecCHHHHHHHHHHh
Q 007917 470 Q----EISTMIRCGQ-RSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWT-AKVRSEDELTEAMKTA 543 (585)
Q Consensus 470 ~----eL~ta~~~~l-pv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~-~~v~~~~eL~~al~~a 543 (585)
+ ||+|++++++ |+++||+||++|++... ......++||.++|++||+ ++ .+|++++||+++|+++
T Consensus 79 ~m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~----~~~~~~~~d~~~~A~a~G~-----~~~~~v~~~~el~~al~~a 149 (188)
T cd03371 79 LMHMGGLATIGGLAPANLIHIVLNNGAHDSVGG----QPTVSFDVSLPAIAKACGY-----RAVYEVPSLEELVAALAKA 149 (188)
T ss_pred HhhccHHHHHHHcCCCCcEEEEEeCchhhccCC----cCCCCCCCCHHHHHHHcCC-----ceEEecCCHHHHHHHHHHH
Confidence 7 9999999997 79999999999998321 1111246899999999999 76 5899999999999999
Q ss_pred hhcCCCCeEEEEEEcCCCCCh
Q 007917 544 TGEQKDSLCFIEVFVHKDDTS 564 (585)
Q Consensus 544 ~~~~~~gp~vIeV~v~~~~~~ 564 (585)
++ .++|+||||.+++.+.+
T Consensus 150 ~~--~~~p~lIev~~~~~~~~ 168 (188)
T cd03371 150 LA--ADGPAFIEVKVRPGSRS 168 (188)
T ss_pred Hh--CCCCEEEEEEecCCCCC
Confidence 86 78999999999988764
No 84
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.95 E-value=3.3e-28 Score=222.01 Aligned_cols=137 Identities=31% Similarity=0.449 Sum_probs=118.7
Q ss_pred cCCccccccc-cccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEE
Q 007917 413 ETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLI 487 (585)
Q Consensus 413 d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~ 487 (585)
|+|++..|.. +++..++.+++.+.++++||+++|+|+|+++|+|+++||+++|||+|+ ||+|++++++|+++||+
T Consensus 1 D~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~~~el~ta~~~~~~v~~vv~ 80 (153)
T PF02775_consen 1 DIGCHTMWAAQYLRVRRPRRFLTSGGFGSMGYALPAAIGAALARPDRPVVAITGDGSFLMSLQELATAVRYGLPVVIVVL 80 (153)
T ss_dssp -SSHHHHHHHHHSCCSSTTEEEESTTTT-TTTHHHHHHHHHHHSTTSEEEEEEEHHHHHHHGGGHHHHHHTTSSEEEEEE
T ss_pred CcChhHHHHHHhcCcCCCCeEEcCCCccccCCHHHhhhHHHhhcCcceeEEecCCcceeeccchhHHHhhccceEEEEEE
Confidence 7899988754 456667777999999999999999999999999999999999999999 99999999999999999
Q ss_pred eCCceeeeeee----cCCC--CC---CCCCCCHHHHHHHhcCCCCCccEEEecCH--HHHHHHHHHhhhcCCCCeEEEEE
Q 007917 488 NNGGYTIEVEI----HDGP--YN---VIKNWDYTGLVNAIHNGEGKCWTAKVRSE--DELTEAMKTATGEQKDSLCFIEV 556 (585)
Q Consensus 488 NN~~~~~~~~~----~~~~--~~---~~~~~d~~~la~a~G~~~~~~~~~~v~~~--~eL~~al~~a~~~~~~gp~vIeV 556 (585)
||++|++.... ..+. .. .++++||.++|++||+ ++.+|++. +||+++|+++++ .+||+||||
T Consensus 81 nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~~el~~al~~a~~--~~gp~vIeV 153 (153)
T PF02775_consen 81 NNGGYGMTGGQQTPFGGGRFSGVDGKTFPNPDFAALAEAFGI-----KGARVTTPDPEELEEALREALE--SGGPAVIEV 153 (153)
T ss_dssp ESSBSHHHHHHHHHTTSTCHHSTBTTTSTTCGHHHHHHHTTS-----EEEEESCHSHHHHHHHHHHHHH--SSSEEEEEE
T ss_pred eCCcceEeccccccCcCcccccccccccccCCHHHHHHHcCC-----cEEEEccCCHHHHHHHHHHHHh--CCCcEEEEc
Confidence 99999983221 1111 12 2688999999999999 99999998 999999999997 899999997
No 85
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.95 E-value=3.2e-27 Score=220.68 Aligned_cols=158 Identities=20% Similarity=0.201 Sum_probs=132.0
Q ss_pred CCCCCHHHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCc
Q 007917 388 NEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG 467 (585)
Q Consensus 388 ~~~~~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDG 467 (585)
...+....++++|++.++++.+++.|+|++..|... +. +++ .++|+||+++|+|+|+++|+|+++||+++|||
T Consensus 7 c~gc~~~~~~~~l~~~l~~~~iv~~D~G~~~~~~~~---~~--~~~--~~~g~mG~gl~~AiGa~la~p~~~Vv~i~GDG 79 (178)
T cd02008 7 CPGCPHRPSFYALRKAFKKDSIVSGDIGCYTLGALP---PL--NAI--DTCTCMGASIGVAIGMAKASEDKKVVAVIGDS 79 (178)
T ss_pred CCCCCChHHHHHHHHHhcCCeEEecCcCcccccccC---Ch--hhc--cccccCccHHHHHhhHHhhCCCCCEEEEecCh
Confidence 446778899999999999999999999998776532 11 122 36899999999999999999999999999999
Q ss_pred hhH-----hHHHHHHhCCCeEEEEEeCCceeeeeeec--CCC--C-CCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHH
Q 007917 468 SFQ-----EISTMIRCGQRSIIFLINNGGYTIEVEIH--DGP--Y-NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELT 537 (585)
Q Consensus 468 sf~-----eL~ta~~~~lpv~ivV~NN~~~~~~~~~~--~~~--~-~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~ 537 (585)
+|+ ||.|++++++|+++||+||++|++...+. ... + ....++||.++|++||+ ++++|++.+||+
T Consensus 80 ~f~~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~l~ 154 (178)
T cd02008 80 TFFHSGILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKTLTEPTTVIDIEALVRAIGV-----KRVVVVDPYDLK 154 (178)
T ss_pred HHhhccHHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcccccCCCCccCHHHHHHHCCC-----CEEEecCccCHH
Confidence 996 89999999999999999999999832211 111 1 22356899999999999 999999888887
Q ss_pred ---HHHHHhhhcCCCCeEEEEEEcC
Q 007917 538 ---EAMKTATGEQKDSLCFIEVFVH 559 (585)
Q Consensus 538 ---~al~~a~~~~~~gp~vIeV~v~ 559 (585)
++|+++++ .++|+||+|+..
T Consensus 155 ~~~~al~~a~~--~~gp~lI~v~~~ 177 (178)
T cd02008 155 AIREELKEALA--VPGVSVIIAKRP 177 (178)
T ss_pred HHHHHHHHHHh--CCCCEEEEEeCC
Confidence 88899986 789999999864
No 86
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.94 E-value=1.7e-26 Score=217.96 Aligned_cols=146 Identities=19% Similarity=0.152 Sum_probs=117.6
Q ss_pred CCCCCEEEecCCccccccccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchh-H----hHHHHHHh
Q 007917 404 LSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF-Q----EISTMIRC 478 (585)
Q Consensus 404 l~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf-~----eL~ta~~~ 478 (585)
.|+|.+++.|+|++.+...++.. +..+++|||++|+|+|+++|+|+|+||+++||||| + ||+|++|+
T Consensus 24 ~~~d~ii~~D~G~~~~~~~~~~~--------~~~~g~mG~glpaAiGa~la~p~r~Vv~i~GDGs~f~m~~~eL~ta~~~ 95 (193)
T cd03375 24 DPEKVVVVSGIGCSSRLPYYFNT--------YGFHTLHGRALAVATGVKLANPDLTVIVVSGDGDLAAIGGNHFIHAARR 95 (193)
T ss_pred CCCCEEEEeCCChhceehhhccc--------cchhhhhccHHHHHHHHHHhCCCCeEEEEeccchHhhccHHHHHHHHHh
Confidence 36689999999997533222221 23358999999999999999999999999999994 4 99999999
Q ss_pred CCCeEEEEEeCCceeeeeeec-----CC------CCCC-CCCCCHHHHHHHhcCCCCCccEE---EecCHHHHHHHHHHh
Q 007917 479 GQRSIIFLINNGGYTIEVEIH-----DG------PYNV-IKNWDYTGLVNAIHNGEGKCWTA---KVRSEDELTEAMKTA 543 (585)
Q Consensus 479 ~lpv~ivV~NN~~~~~~~~~~-----~~------~~~~-~~~~d~~~la~a~G~~~~~~~~~---~v~~~~eL~~al~~a 543 (585)
++|+++||+||++|++..... .+ .+.. .+.+||.++|++||+ ++. +|++++||+++|+++
T Consensus 96 ~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~-----~~~~~~~v~~~~el~~al~~a 170 (193)
T cd03375 96 NIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGA-----TFVARGFSGDIKQLKEIIKKA 170 (193)
T ss_pred CCCeEEEEEcCcccccCCCccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCC-----CEEEEEecCCHHHHHHHHHHH
Confidence 999999999999999832111 11 1111 245899999999999 774 799999999999999
Q ss_pred hhcCCCCeEEEEEEcCCCCCh
Q 007917 544 TGEQKDSLCFIEVFVHKDDTS 564 (585)
Q Consensus 544 ~~~~~~gp~vIeV~v~~~~~~ 564 (585)
++ .++|+||||.++.-..|
T Consensus 171 l~--~~gp~vIev~~~C~~~~ 189 (193)
T cd03375 171 IQ--HKGFSFVEVLSPCPTFP 189 (193)
T ss_pred Hh--cCCCEEEEEECCCCCCC
Confidence 97 79999999999876554
No 87
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.94 E-value=5.5e-26 Score=220.29 Aligned_cols=165 Identities=18% Similarity=0.129 Sum_probs=134.3
Q ss_pred CCCCCHHHHHHHHHhhCCCCCEEEecCCcccccccc-----ccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEE
Q 007917 388 NEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQK-----LRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIA 462 (585)
Q Consensus 388 ~~~~~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~~~-----~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~ 462 (585)
+..+.+..+++.|++.+|++.+++.|+|++..|..+ ++.+...+++. ..++||+++|+|||++++.|+++||+
T Consensus 8 C~gC~~~~~~~~l~~~lp~d~iiv~D~G~~~~~~~~~~~~~~~~~~~~~~~~--~~gsmG~GlpaAiGa~~a~p~r~VV~ 85 (235)
T cd03376 8 CAGCGAALALRHVLKALGPDTVVVNPTGCLEVITTPYPYTAWRVPWIHVAFE--NAAAVASGIEAALKALGRGKDITVVA 85 (235)
T ss_pred CCCCccHHHHHHHHHHhhcCeEEEeCCCcccccCCcCCCccccccceehhhc--CHHHHHHHHHHHHHHhccCCCCeEEE
Confidence 346889999999999999999999999999764332 23333333332 34799999999999999999999999
Q ss_pred EEcCchh-H----hHHHHHHhCCCeEEEEEeCCceeee---eeecC---CC-----C-C-----CCCCCCHHHHHHHhcC
Q 007917 463 CIGDGSF-Q----EISTMIRCGQRSIIFLINNGGYTIE---VEIHD---GP-----Y-N-----VIKNWDYTGLVNAIHN 520 (585)
Q Consensus 463 v~GDGsf-~----eL~ta~~~~lpv~ivV~NN~~~~~~---~~~~~---~~-----~-~-----~~~~~d~~~la~a~G~ 520 (585)
++|||+| + ||+|++++++|+++||+||+.|++. +.... .. + . ..+.+||.++|++||+
T Consensus 86 i~GDG~~~~m~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~ 165 (235)
T cd03376 86 FAGDGGTADIGFQALSGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNI 165 (235)
T ss_pred EEcCchHHhhHHHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccCCHHHHHHHcCC
Confidence 9999995 4 9999999999999999999999962 11111 10 1 1 2356899999999998
Q ss_pred CCCCccEE---EecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCC
Q 007917 521 GEGKCWTA---KVRSEDELTEAMKTATGEQKDSLCFIEVFVHKD 561 (585)
Q Consensus 521 ~~~~~~~~---~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~ 561 (585)
+++ ++++++||+++|+++++ .++|+||||.++.-
T Consensus 166 -----~~~~~~~v~~~~el~~al~~a~~--~~gP~lIev~~~C~ 202 (235)
T cd03376 166 -----PYVATASVAYPEDLYKKVKKALS--IEGPAYIHILSPCP 202 (235)
T ss_pred -----cEEEEEcCCCHHHHHHHHHHHHh--CCCCEEEEEECCCC
Confidence 775 58999999999999997 78999999999865
No 88
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.94 E-value=2.1e-26 Score=213.84 Aligned_cols=156 Identities=27% Similarity=0.443 Sum_probs=134.7
Q ss_pred HHHHHHhhCCCCCEEEecCCcccccccc-ccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----
Q 007917 396 LFKHIQDMLSGDTAVIAETGDSWFNCQK-LRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ---- 470 (585)
Q Consensus 396 ~~~~L~~~l~~~~ii~~d~G~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~---- 470 (585)
+++.|.+.++++++++.|+|++..+... +....+.+++.+.++++||+++|+|+|++++.|+++|++++|||+|+
T Consensus 2 ~~~~l~~~~~~~~~i~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~~a~Gaa~a~~~~~vv~~~GDG~~~~~~~ 81 (168)
T cd00568 2 VLAALRAALPEDAIVVNDAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGYGLPAAIGAALAAPDRPVVCIAGDGGFMMTGQ 81 (168)
T ss_pred HHHHHHHHCCCCCEEEeCCcHHHHHHHHheeeCCCCcEEeCCCchhhhhhHHHHHHHHHhCCCCcEEEEEcCcHHhccHH
Confidence 6788999999999999999998776543 34445555888899999999999999999999999999999999998
Q ss_pred hHHHHHHhCCCeEEEEEeCCceeeeeeec----CC--CCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhh
Q 007917 471 EISTMIRCGQRSIIFLINNGGYTIEVEIH----DG--PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTAT 544 (585)
Q Consensus 471 eL~ta~~~~lpv~ivV~NN~~~~~~~~~~----~~--~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~ 544 (585)
+|+|++++++|+++||+||++|++....+ +. .+...+.+||.+++++||+ ++.+|+++++|++++++++
T Consensus 82 ~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~-----~~~~v~~~~~l~~a~~~a~ 156 (168)
T cd00568 82 ELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAALAEAYGA-----KGVRVEDPEDLEAALAEAL 156 (168)
T ss_pred HHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHH
Confidence 99999999999999999999999832211 11 2344578899999999999 9999999999999999998
Q ss_pred hcCCCCeEEEEEEc
Q 007917 545 GEQKDSLCFIEVFV 558 (585)
Q Consensus 545 ~~~~~gp~vIeV~v 558 (585)
+ .++|+||||++
T Consensus 157 ~--~~~p~~i~v~~ 168 (168)
T cd00568 157 A--AGGPALIEVKT 168 (168)
T ss_pred h--CCCCEEEEEEC
Confidence 6 78999999975
No 89
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.94 E-value=4.9e-26 Score=212.17 Aligned_cols=153 Identities=24% Similarity=0.261 Sum_probs=127.4
Q ss_pred HHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH---
Q 007917 394 NVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ--- 470 (585)
Q Consensus 394 ~~~~~~L~~~l~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~--- 470 (585)
..+++.|++.+| ++++++|+|++..+.+.+. ..+.+++ .+|+||+++|+|+|+++|.| ++|||++|||+|+
T Consensus 2 ~~~~~~l~~~~~-~~~vv~d~G~~~~~~~~~~-~~~~~~~---~~g~mG~~lp~AiGaala~~-~~vv~i~GDG~f~m~~ 75 (179)
T cd03372 2 RDAIKTLIADLK-DELVVSNIGFPSKELYAAG-DRPLNFY---MLGSMGLASSIGLGLALAQP-RKVIVIDGDGSLLMNL 75 (179)
T ss_pred HHHHHHHHHhCC-CCeEEeCCCHhHHHHHHcc-Ccccccc---cccchhhHHHHHHHHHhcCC-CcEEEEECCcHHHhCH
Confidence 468899999999 9999999999865543332 1222354 28999999999999999988 9999999999997
Q ss_pred -hHHHHHHhCC-CeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEec-CHHHHHHHHHHhhhcC
Q 007917 471 -EISTMIRCGQ-RSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR-SEDELTEAMKTATGEQ 547 (585)
Q Consensus 471 -eL~ta~~~~l-pv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~-~~~eL~~al~~a~~~~ 547 (585)
||+|++++++ |+++||+||++|++.... ..+ ...++||.++|++||+ ++.+++ ++++|+++|++++
T Consensus 76 ~el~ta~~~~~~~l~vvV~NN~~~~~~~~~--~~~-~~~~~d~~~lA~a~G~-----~~~~v~~~~~el~~al~~a~--- 144 (179)
T cd03372 76 GALATIAAEKPKNLIIVVLDNGAYGSTGNQ--PTH-AGKKTDLEAVAKACGL-----DNVATVASEEAFEKAVEQAL--- 144 (179)
T ss_pred HHHHHHHHcCCCCEEEEEEcCccccccCCC--CCC-CCCCCCHHHHHHHcCC-----CeEEecCCHHHHHHHHHHhc---
Confidence 9999999995 799999999999984211 111 1247899999999999 899999 9999999999985
Q ss_pred CCCeEEEEEEcCCCCCh
Q 007917 548 KDSLCFIEVFVHKDDTS 564 (585)
Q Consensus 548 ~~gp~vIeV~v~~~~~~ 564 (585)
++|+||||.+++.+.+
T Consensus 145 -~gp~lIev~~~~~~~~ 160 (179)
T cd03372 145 -DGPSFIHVKIKPGNTD 160 (179)
T ss_pred -CCCEEEEEEEcCCCCC
Confidence 6899999999987765
No 90
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.94 E-value=4.8e-26 Score=221.17 Aligned_cols=169 Identities=15% Similarity=0.096 Sum_probs=137.2
Q ss_pred CCCCCHHHHHHHHHhhCC--CCCEEEecCCccccccccc-cccCCCeeEecc--CcccccchHHHHHHHhhh-----cCC
Q 007917 388 NEPLRVNVLFKHIQDMLS--GDTAVIAETGDSWFNCQKL-RLPENCGYEFQM--QYGSIGWSVGATLGYAQA-----AKD 457 (585)
Q Consensus 388 ~~~~~~~~~~~~L~~~l~--~~~ii~~d~G~~~~~~~~~-~~~~~~~~~~~~--~~g~mG~~lpaAiGaalA-----~p~ 457 (585)
+..+...-+++.|.+.++ ++.+++.|+|++..|...+ ..+....+..+. +.|+||+++|+|||++++ .|+
T Consensus 8 c~gc~~~~~~~~l~~~l~~p~d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~~~p~ 87 (237)
T cd02018 8 CAGCGEVTAVRVVLAALPAPEDTVIANSTGCSSVYASTAPFNSWAVPWVNSLFEDANAVASGLKRGLKARFPKDRELDKK 87 (237)
T ss_pred CcCCCcHHHHHHHHHHhCCCCCEEEEeCCCccceecccCcCcccCCCeeeccccCHHHHHHHHHHHHHhhcccccccCCC
Confidence 346788899999999999 9999999999998776433 222222344443 569999999999999999 999
Q ss_pred CcEEEEEcCchhH-----hHHHHHHhCCCeEEEEEeCCceeeeeeec-----CC------C-CCCCCCCCHHHHHHHhcC
Q 007917 458 KRVIACIGDGSFQ-----EISTMIRCGQRSIIFLINNGGYTIEVEIH-----DG------P-YNVIKNWDYTGLVNAIHN 520 (585)
Q Consensus 458 ~~vv~v~GDGsf~-----eL~ta~~~~lpv~ivV~NN~~~~~~~~~~-----~~------~-~~~~~~~d~~~la~a~G~ 520 (585)
++||+++|||+|+ +|+|++++++|+++||+||+.|++...+. .+ . ..++.++||+++|++||+
T Consensus 88 ~~Vv~i~GDG~~~~~g~~~l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~ 167 (237)
T cd02018 88 KDVVVIGGDGATYDIGFGALSHSLFRGEDITVIVLDNEVYSNTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGC 167 (237)
T ss_pred CcEEEEeCchHHHhccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCC
Confidence 9999999999873 99999999999999999999999832111 11 1 123567999999999999
Q ss_pred CCCCccEEE---ecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCC
Q 007917 521 GEGKCWTAK---VRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 562 (585)
Q Consensus 521 ~~~~~~~~~---v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~ 562 (585)
++.+ |+++++|+++|+++++ +.+||+||||.++...
T Consensus 168 -----~~~~~~~v~~~~~l~~al~~al~-~~~GP~lI~v~i~c~~ 206 (237)
T cd02018 168 -----VYVARLSPALKKHFLKVVKEAIS-RTDGPTFIHAYTPCIT 206 (237)
T ss_pred -----CEEEEEccCCHHHHHHHHHHHHh-cCCCCEEEEEeCCCCC
Confidence 8875 9999999999999982 2689999999988654
No 91
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.94 E-value=8e-26 Score=222.46 Aligned_cols=159 Identities=20% Similarity=0.188 Sum_probs=130.4
Q ss_pred CCCCHHHHHHHHHhh--CCCCCEEEecCCccccccccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcC
Q 007917 389 EPLRVNVLFKHIQDM--LSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGD 466 (585)
Q Consensus 389 ~~~~~~~~~~~L~~~--l~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GD 466 (585)
..+.+..++++|++. .+++.++++|+|++.++..++. + ....++||+++|+|+|+++|+|+++||+++||
T Consensus 24 ~~i~~~~v~~al~e~~~~~~d~ivvsdiGc~~~~~~~~~-~-------~~~~~~~G~alPaAiGaklA~Pdr~VV~i~GD 95 (277)
T PRK09628 24 DGVILKSIIRAIDKLGWNMDDVCVVSGIGCSGRFSSYVN-C-------NTVHTTHGRAVAYATGIKLANPDKHVIVVSGD 95 (277)
T ss_pred CchHHHHHHHHHHHhcCCCCCEEEEeCcCHHHHhhccCC-C-------CceeeccccHHHHHHHHHHHCCCCeEEEEECc
Confidence 457889999999998 5889999999999865433221 1 12235899999999999999999999999999
Q ss_pred chhH-----hHHHHHHhCCCeEEEEEeCCceeeeeeecC-----C------CCCC-CCCCCHHHHHHHhcCCCCCccE--
Q 007917 467 GSFQ-----EISTMIRCGQRSIIFLINNGGYTIEVEIHD-----G------PYNV-IKNWDYTGLVNAIHNGEGKCWT-- 527 (585)
Q Consensus 467 Gsf~-----eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~-----~------~~~~-~~~~d~~~la~a~G~~~~~~~~-- 527 (585)
|+|+ |+.|++|+++|+++||+||+.||+...+.. + ++.. .+++||.++|++||+ .+
T Consensus 96 G~f~~~g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~-----~~va 170 (277)
T PRK09628 96 GDGLAIGGNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGA-----SFVA 170 (277)
T ss_pred hHHHHhhHHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCC-----ceEE
Confidence 9996 888899999999999999999998322110 1 1212 256799999999999 76
Q ss_pred -EEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCC
Q 007917 528 -AKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 562 (585)
Q Consensus 528 -~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~ 562 (585)
.+|.+++||+++|++|++ .+||+||||.++...
T Consensus 171 ~~~v~~~~el~~al~~Al~--~~Gp~lIeV~~~c~~ 204 (277)
T PRK09628 171 RESVIDPQKLEKLLVKGFS--HKGFSFFDVFSNCHI 204 (277)
T ss_pred EEccCCHHHHHHHHHHHHh--CCCCEEEEEcCCCCC
Confidence 489999999999999997 899999999998764
No 92
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.93 E-value=5.5e-26 Score=205.82 Aligned_cols=152 Identities=19% Similarity=0.216 Sum_probs=121.5
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEE-ecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHHHHH
Q 007917 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLV-GCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAI 108 (585)
Q Consensus 31 ~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i-~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~gl 108 (585)
|+|++.|+++||+++||+||+.+.+|++++.. +|++| .++||++|++||++| +++|+ ++|+.++|+| |++++|
T Consensus 2 ~~~v~~L~~~Gv~~vfGvPg~~~~~l~dal~~--~i~~i~~~~ee~aa~~aAg~~-~~~~~~~v~~~~sG~g--n~~~~l 76 (157)
T TIGR03845 2 EAVYNILKDAGIDLVASVPCDNLKNLLPLIEK--DFRHIPLTREEEGVGICAGAY-LAGKKPAILMQSSGLG--NSINAL 76 (157)
T ss_pred hHHHHHHHHCCCeEEEecCcHhHHHHHHHHHh--CCcEEecCChHHHHHHHHHHH-HhcCCcEEEEeCCcHH--HHHHHH
Confidence 68999999999999999999999999999953 49999 888999999999988 99888 7777777766 999999
Q ss_pred HHhh-hcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCCcEE
Q 007917 109 AGAY-SENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVY 187 (585)
Q Consensus 109 ~~A~-~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~ 187 (585)
++|+ .+++|||+|+|+++.......... ..+ .. +...+..+--++..+.+++++ ..+++|++.|.+.+|||+
T Consensus 77 ~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~--~~g--~~--~~~~l~~~~i~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~ 149 (157)
T TIGR03845 77 ASLNKTYGIPLPILASWRGVYKEKIPAQI--PMG--RA--TPKLLDTLGIPYTIPREPEEA-KLIEKAISDAYENSRPVA 149 (157)
T ss_pred HHHHHcCCCCEEEEEeccCCCCCCCcccc--chh--hh--hHHHHHHcCCCeEEeCCHHHH-HHHHHHHHHHHhCCCCEE
Confidence 9999 999999999999887321110000 000 00 112222221268899999999 999999999999889999
Q ss_pred EEecCCC
Q 007917 188 ISISCNL 194 (585)
Q Consensus 188 i~iP~dv 194 (585)
|-++.++
T Consensus 150 il~~~~~ 156 (157)
T TIGR03845 150 ALLDPKY 156 (157)
T ss_pred EEEeCCc
Confidence 9998775
No 93
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.93 E-value=9.5e-25 Score=216.39 Aligned_cols=171 Identities=19% Similarity=0.203 Sum_probs=138.2
Q ss_pred CCCCHHHHHHHHHhhC------CCCCEEEecCCccccccccccccCCCeeEeccCc-ccccchHHHHHHHhhhcCCCcEE
Q 007917 389 EPLRVNVLFKHIQDML------SGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQY-GSIGWSVGATLGYAQAAKDKRVI 461 (585)
Q Consensus 389 ~~~~~~~~~~~L~~~l------~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lpaAiGaalA~p~~~vv 461 (585)
+.+....+++.|.+.+ |++.++++|+|++.++.. |+.+.++ ++||+++|+|+|+|+|+|+++||
T Consensus 21 pGCg~~~il~~l~~al~~l~~~p~d~vvvsdiGc~~~~~~---------~~~~~~~~g~mG~alpaAiGaklA~Pd~~VV 91 (286)
T PRK11867 21 PGCGDGSILAALQRALAELGLDPENVAVVSGIGCSGRLPG---------YINTYGFHTIHGRALAIATGLKLANPDLTVI 91 (286)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCcEEEEeCCccccccCc---------cccccchhhhhhcHHHHHHHHHHhCCCCcEE
Confidence 4577888999999999 789999999999976542 3444555 99999999999999999999999
Q ss_pred EEEcCch-hH----hHHHHHHhCCCeEEEEEeCCceeeeeeec-C-----C-----CCCCC-CCCCHHHHHHHhcCCCCC
Q 007917 462 ACIGDGS-FQ----EISTMIRCGQRSIIFLINNGGYTIEVEIH-D-----G-----PYNVI-KNWDYTGLVNAIHNGEGK 524 (585)
Q Consensus 462 ~v~GDGs-f~----eL~ta~~~~lpv~ivV~NN~~~~~~~~~~-~-----~-----~~~~~-~~~d~~~la~a~G~~~~~ 524 (585)
+++|||+ |+ ||.|++|+++|+++||+||++|++...+. . . ++... +++||.++|+++|+
T Consensus 92 ~i~GDG~~f~mg~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga---- 167 (286)
T PRK11867 92 VVTGDGDALAIGGNHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGA---- 167 (286)
T ss_pred EEeCccHHHhCCHHHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCC----
Confidence 9999996 75 99999999999999999999999832221 1 1 11122 35899999999998
Q ss_pred ccEEE---ecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCC-hHHHHHHHHhhh
Q 007917 525 CWTAK---VRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDT-SKELLEWGSRVS 575 (585)
Q Consensus 525 ~~~~~---v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~-~~~~~~~~~~~~ 575 (585)
.++. +.+++||+++|++|++ .+||+||||.++.-.. +..+.+|.+...
T Consensus 168 -~~va~~~~~~~~el~~al~~Al~--~~Gp~lIev~~~C~~~~~~~~~~~~~~~~ 219 (286)
T PRK11867 168 -TFVARGFDSDVKQLTELIKAAIN--HKGFSFVEILQPCPTFNNVNTFDWFKERL 219 (286)
T ss_pred -cEEEEecCCCHHHHHHHHHHHHh--CCCCEEEEEeCCCCCCCchHHHHHHHHhc
Confidence 6653 6789999999999997 8899999999997665 555555555443
No 94
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=99.92 E-value=2.8e-22 Score=209.07 Aligned_cols=480 Identities=16% Similarity=0.124 Sum_probs=295.0
Q ss_pred CCcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCC----CCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCC
Q 007917 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEP----ELNLVGCCNELNAGYAADGYARSRGV-GACVVTFT 98 (585)
Q Consensus 24 ~~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~----~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~G 98 (585)
...+.+.++|++.+.+.||.++-|+||+++.+|.+.|.+.. ++.+.+..||..|..+|.| |...|. +.+..- .
T Consensus 13 ~~~llGneAi~r~Ale~gV~~~aGYpGtPstei~e~la~~~~~l~~vy~e~s~NEkvA~e~a~G-A~~~G~ral~~mK-h 90 (640)
T COG4231 13 KRLLLGNEAIARGALEAGVGVAAGYPGTPSTELIETLAKAKKILGDVYFEWSLNEKVALETAAG-ASYAGVRALVTMK-H 90 (640)
T ss_pred HHHhccHHHHHHHHHhcCceEEeccCCCCcHHHHHHHHHhhhhcCcEEEEecccHHHHHHHHHH-hhhcCceeeEEec-c
Confidence 45678999999999999999999999999999999997654 5999999999999999999 666665 544332 5
Q ss_pred cchHHHHHHHHHhhhcCCc--EEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHH
Q 007917 99 VGGLSVLNAIAGAYSENLP--VICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAI 176 (585)
Q Consensus 99 pG~~n~~~gl~~A~~~~~P--ll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~ 176 (585)
||+--+...+.++.+.++- ||+|+||.|... ++|+.|......++. --+..+..+++++.+++..||
T Consensus 91 VGlNvAsDpl~s~ay~Gv~GGlviv~aDDpg~~---------SSqneqdsr~y~~~a--~iPvLeP~d~Qea~d~~~~af 159 (640)
T COG4231 91 VGLNVASDPLMSLAYAGVTGGLVIVVADDPGMH---------SSQNEQDSRAYGKFA--LIPVLEPSDPQEAYDYVKYAF 159 (640)
T ss_pred cccccchhhhhhhhhcCccccEEEEEccCCCcc---------cccchhHhHHHHHhc--CceeecCCChHHHHHHHHHHH
Confidence 6655577777777777764 999999988872 444443322233333 346677789999999999999
Q ss_pred HHhhhcCCcEEEEecCCCCCCCCCCCCC----CCC-Cc----c-------CCCCCC---ChhhHHHHHHHHHHHHHhc--
Q 007917 177 STALKESKPVYISISCNLPGIPHPTFAR----DPV-PF----F-------LAPKVS---NQLGLEAAVEATADFLNKA-- 235 (585)
Q Consensus 177 ~~a~~~~gPV~i~iP~dv~~~~~~~~~~----~~~-~~----~-------~~~~~~---~~~~~~~~~~~~~~~l~~a-- 235 (585)
+++..-.-||.|..-.++.+....++.. ++. +. . ..|... ...-....+.++.+.+++.
T Consensus 160 elSe~~~~pVilr~ttr~~h~~~~V~~~~~~~~~~~~~~~~~~k~~~r~V~~p~~~~~~~~~~l~~k~~a~~~~~~~~~~ 239 (640)
T COG4231 160 ELSEKSGLPVILRTTTRVSHSRGDVEVGLNRRPIVEPEDEFFIKDPGRYVRVPANALRHRHRKLLEKWEAAEEFINANPL 239 (640)
T ss_pred HHHHHhCCCEEEEEEeeeeccceeEEeccccCCCCccccccccCCccceeecCcccchhhHHHHHHHHHHHHHHHhhCcc
Confidence 9999888899999999987753222110 000 00 0 000000 0001112233333333321
Q ss_pred -------CCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEE
Q 007917 236 -------VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVF 308 (585)
Q Consensus 236 -------~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~ 308 (585)
+.-+-|+..|..+....++|++|- +..+++. +...||+. .....++++.-+-||+
T Consensus 240 n~v~~~~~~~lGII~~G~ay~yVkeAl~~lg--l~~~~lk-------lg~~~Plp---------~~~i~~F~~g~~~vlV 301 (640)
T COG4231 240 NRVEGSDDAKLGIIASGIAYNYVKEALEDLG--LDDELLK-------LGTPYPLP---------EQLIENFLKGLERVLV 301 (640)
T ss_pred cccccCCCCceEEEecCccHHHHHHHHHHcC--CCceeEE-------ecCCcCCC---------HHHHHHHHhcCcEEEE
Confidence 122323344444444555555441 1222222 22334432 2345567777777777
Q ss_pred eCC--ccCCcccccccccCCCcceEEEcCCceeecCCCccccccHHHHHHHHHHHhccCcc-chh----hhhhccCCCCC
Q 007917 309 VGP--IFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTT-ALE----NYRRIYVPPGI 381 (585)
Q Consensus 309 lG~--~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~-~~~----~~~~~~~~~~~ 381 (585)
+-. .+-+.....+.. +...-+.+.--...+ .+..+++++..+..+|...+..... ... +.++.. ....
T Consensus 302 VEE~~P~iE~qv~~~l~--~~g~~v~v~GKd~gl--lP~~GElt~~~i~~ai~~~l~~~~~~s~~~~~~~~~~~~-~~~~ 376 (640)
T COG4231 302 VEEGEPFIEEQVKALLY--DAGLPVEVHGKDEGL--LPMEGELTPEKIANAIAKFLGKEGSPSYESIVAEVRKAA-VLIP 376 (640)
T ss_pred EecCCchHHHHHHHHHH--hcCCceEeecccccc--cCcccccCHHHHHHHHHHHhCccCCcccccchhhhhccc-ccCC
Confidence 732 222221111100 000001110000000 1233466888888888888765422 111 111110 0011
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhC---CCCCEEEecCCccccccccccccCCCeeEeccCcccccchHHHHHHHhhhcCCC
Q 007917 382 PVKRAQNEPLRVNVLFKHIQDML---SGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDK 458 (585)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~L~~~l---~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~ 458 (585)
+..+.-+..+.++..++.+++.. .... -.|+||+.++.+.- +-.....-+||.+++.|=|+.++.+ +
T Consensus 377 ~RpP~lC~GCPHr~sf~~~k~~~~~~~~~~--~~DIGCytlg~~~P-------~~~~d~t~~mGssig~a~g~~~~~~-k 446 (640)
T COG4231 377 PRPPALCPGCPHRPSFYALKKAAAELGGHP--SGDIGCYTLGILPP-------LNTVDTTTMMGSSIGIAGGLSFAST-K 446 (640)
T ss_pred CCCCcCCCCCCCchhhHHHHHHHHhhCCCC--CCCcceeecccCCC-------cchhhhhhhccchhhhccccccccC-C
Confidence 11222233456666666665544 3333 67999998775421 1122234568888999999988765 8
Q ss_pred cEEEEEcCchhH-----hHHHHHHhCCCeEEEEEeCCceee-eeeecCCC-----CCCCCCCCHHHHHHHhcCCCCCccE
Q 007917 459 RVIACIGDGSFQ-----EISTMIRCGQRSIIFLINNGGYTI-EVEIHDGP-----YNVIKNWDYTGLVNAIHNGEGKCWT 527 (585)
Q Consensus 459 ~vv~v~GDGsf~-----eL~ta~~~~lpv~ivV~NN~~~~~-~~~~~~~~-----~~~~~~~d~~~la~a~G~~~~~~~~ 527 (585)
++|+++|||+|+ .|..|+..+.|++++|++|...+| ..+.+++. .+.-..++.+.+++++|+ ..
T Consensus 447 ~~va~iGDsTF~HsGi~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~~~~g~~~~~i~iee~~r~~Gv-----~~ 521 (640)
T COG4231 447 KIVAVIGDSTFFHSGILALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGVAAEGTKSTAIVIEEVVRAMGV-----ED 521 (640)
T ss_pred ceEEEeccccccccCcHHHHHHHhcCCCeEEEEEeccchhccCCCCCCCcccccCCCccceeEhhHhhhhcCc-----ee
Confidence 999999999999 889999999999999999999999 33444432 122356899999999999 55
Q ss_pred EEec---CHHHHHHHHHHhhhcCCCCeEEEEE
Q 007917 528 AKVR---SEDELTEAMKTATGEQKDSLCFIEV 556 (585)
Q Consensus 528 ~~v~---~~~eL~~al~~a~~~~~~gp~vIeV 556 (585)
+++. +.+++.++++++++ ..||.||-.
T Consensus 522 v~~vdp~~~~~~~~~~keale--~~gpsViia 551 (640)
T COG4231 522 VETVDPYDVKELSEAIKEALE--VPGPSVIIA 551 (640)
T ss_pred eeccCCcchHHHHHHHHHHhc--CCCceEEEE
Confidence 5543 67889999999997 788888743
No 95
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.92 E-value=1.4e-24 Score=215.87 Aligned_cols=155 Identities=21% Similarity=0.209 Sum_probs=126.5
Q ss_pred CCHHHHHHHHHhh-C-CCCCEEEecCCccccccccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCch
Q 007917 391 LRVNVLFKHIQDM-L-SGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGS 468 (585)
Q Consensus 391 ~~~~~~~~~L~~~-l-~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGs 468 (585)
+-...++++|.+. + |++.++++|+|++.+...++. .+...++||+++|+|+|+++|+|+++||+++|||+
T Consensus 28 ~i~~~i~~al~~l~l~p~d~vivsdiG~s~~~~~yl~--------~~~~~g~mG~alpaAiGaklA~pd~~VV~i~GDG~ 99 (301)
T PRK05778 28 GILNAIIQALAELGLDPDKVVVVSGIGCSSKIPGYFL--------SHGLHTLHGRAIAFATGAKLANPDLEVIVVGGDGD 99 (301)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCcHhhhhhhhcc--------cCccchhhccHHHHHHHHHHHCCCCcEEEEeCccH
Confidence 4467777888886 4 788899999999875443221 22334899999999999999999999999999999
Q ss_pred hH-----hHHHHHHhCCCeEEEEEeCCceeeeeeec-----CC------CC-CCCCCCCHHHHHHHhcCCCCCccEE---
Q 007917 469 FQ-----EISTMIRCGQRSIIFLINNGGYTIEVEIH-----DG------PY-NVIKNWDYTGLVNAIHNGEGKCWTA--- 528 (585)
Q Consensus 469 f~-----eL~ta~~~~lpv~ivV~NN~~~~~~~~~~-----~~------~~-~~~~~~d~~~la~a~G~~~~~~~~~--- 528 (585)
|+ ||+|++|+++|+++||+||++||+...+. .+ ++ ....++||.++|+++|+ .++
T Consensus 100 ~~~mg~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~-----~~va~~ 174 (301)
T PRK05778 100 LASIGGGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPIDPCALALAAGA-----TFVARS 174 (301)
T ss_pred HHhccHHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCCHHHHHHHCCC-----CEEEEe
Confidence 74 99999999999999999999999832211 01 12 22357899999999999 776
Q ss_pred EecCHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007917 529 KVRSEDELTEAMKTATGEQKDSLCFIEVFVHK 560 (585)
Q Consensus 529 ~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~ 560 (585)
++.+++||+++|++|++ .+||+||||.+..
T Consensus 175 ~v~~~~eL~~ai~~A~~--~~GpalIeV~~~C 204 (301)
T PRK05778 175 FAGDVKQLVELIKKAIS--HKGFAFIDVLSPC 204 (301)
T ss_pred ccCCHHHHHHHHHHHHh--CCCCEEEEEcCCC
Confidence 78999999999999997 8999999999874
No 96
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.91 E-value=5.9e-24 Score=208.67 Aligned_cols=158 Identities=16% Similarity=0.168 Sum_probs=126.0
Q ss_pred CCCHHHHHHHHHhhC------CCCCEEEecCCccccccccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEE
Q 007917 390 PLRVNVLFKHIQDML------SGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIAC 463 (585)
Q Consensus 390 ~~~~~~~~~~L~~~l------~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v 463 (585)
.+....++..+.+.+ |++.+++.|+|++..+..++. .+...+.||+++|+|+|+++|+|+++||++
T Consensus 13 GCg~~~i~~~~~~a~~~l~~~p~d~ivvsdiG~~~~~~~~~~--------~~~~~~~mG~alp~AiGaklA~pd~~VVai 84 (280)
T PRK11869 13 GCGNFGIRNALMKALSELNLKPRQVVIVSGIGQAAKMPHYIN--------VNGFHTLHGRAIPAATAVKATNPELTVIAE 84 (280)
T ss_pred CCCCHHHHHHHHHHHHHcCCCCCCEEEEeCchHhhhHHHHcc--------CCCCCcccccHHHHHHHHHHHCCCCcEEEE
Confidence 455555555555544 678999999999876533221 123457799999999999999999999999
Q ss_pred EcCchhH-----hHHHHHHhCCCeEEEEEeCCceeeee-eecC----C------CCC-CCCCCCHHHHHHHhcCCCCCcc
Q 007917 464 IGDGSFQ-----EISTMIRCGQRSIIFLINNGGYTIEV-EIHD----G------PYN-VIKNWDYTGLVNAIHNGEGKCW 526 (585)
Q Consensus 464 ~GDGsf~-----eL~ta~~~~lpv~ivV~NN~~~~~~~-~~~~----~------~~~-~~~~~d~~~la~a~G~~~~~~~ 526 (585)
+|||+|+ ||+||+|+++|+++||+||++|++.. +... + ++. ...++||.++|+++|+ .
T Consensus 85 ~GDG~~~~iG~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~-----~ 159 (280)
T PRK11869 85 GGDGDMYAEGGNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDA-----S 159 (280)
T ss_pred ECchHHhhCcHHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCC-----C
Confidence 9999998 99999999999999999999999822 1111 0 112 2356899999999999 7
Q ss_pred EEE---ecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCC
Q 007917 527 TAK---VRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 562 (585)
Q Consensus 527 ~~~---v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~ 562 (585)
++. +.+++||+++|++|++ .+||+||||.+..-.
T Consensus 160 ~va~~~~~~~~~l~~~i~~Al~--~~Gp~lIeV~~pC~~ 196 (280)
T PRK11869 160 FVARTFSGDIEETKEILKEAIK--HKGLAIVDIFQPCVS 196 (280)
T ss_pred EEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEEECCCCC
Confidence 887 7799999999999997 899999999998654
No 97
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=99.90 E-value=1.1e-23 Score=188.32 Aligned_cols=132 Identities=33% Similarity=0.558 Sum_probs=114.3
Q ss_pred HHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCC
Q 007917 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESAD 304 (585)
Q Consensus 225 ~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD 304 (585)
+++++++|.+|+||+|++|.++.++++.+++++|+|++|+||++|+++||+||++||+|+|. .|..+++.+++++++||
T Consensus 1 i~~~~~~L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~-~g~~~~~~~~~~l~~aD 79 (137)
T PF00205_consen 1 IDEAADLLSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGY-LGLFGSPAANEALEQAD 79 (137)
T ss_dssp HHHHHHHHHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEE-SCGGSCHHHHHHHHHSS
T ss_pred CHHHHHHHHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhccc-CCccCCHHHHHHhcCCC
Confidence 57899999999999999999999999999999999999999999999999999999999994 68888999999999999
Q ss_pred EEEEeCCccCCccccccc-ccCCCcceEEEcCCceeecCCCcccc----ccHHHHHHHH
Q 007917 305 AYVFVGPIFNDYSSVGYS-LLIKKEKAIIVQPHRVTVGNGPSLGW----VFMADFLSAL 358 (585)
Q Consensus 305 ~vl~lG~~~~~~~~~~~~-~~~~~~~~i~id~~~~~~~~~~~~~~----~~~~~~l~~L 358 (585)
+||++|++++++.+.++. .+.+..++||||.|+.+++ +.+..+ .|++.+|++|
T Consensus 80 lvl~iG~~~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~-~~~~~~~~i~~d~~~~l~~L 137 (137)
T PF00205_consen 80 LVLAIGTRLSDFNTYGFSPAFNPDAKIIQIDPDPAEIG-KNYPPDVAIVGDIKAFLRAL 137 (137)
T ss_dssp EEEEESSSSSTTTTTTTTGCSTTTSEEEEEESSGGGTT-SSSEESEEEESHHHHHHHHH
T ss_pred EEEEECCCCccccccccccccCCCCEEEEEECCHHHhC-CCCCCCEEEEECHHHHhhCC
Confidence 999999999998776543 3444458999999999987 444333 4788898876
No 98
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.90 E-value=8.6e-23 Score=200.67 Aligned_cols=161 Identities=18% Similarity=0.132 Sum_probs=129.0
Q ss_pred CCCCCHHHHHHHHHhhC------CCCCEEEecCCccccccccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEE
Q 007917 388 NEPLRVNVLFKHIQDML------SGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVI 461 (585)
Q Consensus 388 ~~~~~~~~~~~~L~~~l------~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv 461 (585)
+..+....++..|++.+ +++.++++|+|++.+...++. .....++||+++|+|+|+++|+|+++||
T Consensus 10 CpGCg~~~il~al~~al~~l~~~~~~~ivvsdiGc~~~~~~~~~--------~~~~~~~~G~alp~A~GaklA~Pd~~VV 81 (279)
T PRK11866 10 CPGCGNYGILEALRKALAELGIPPENVVVVSGIGCSSNLPEFLN--------TYGIHGIHGRVLPIATGVKWANPKLTVI 81 (279)
T ss_pred CCCCCChHHHHHHHHHHHHhcCCCCCEEEEECCchhhhhhhhcc--------CCCcccccccHHHHHHHHHHHCCCCcEE
Confidence 34677888888888887 778899999999974322222 1233789999999999999999999999
Q ss_pred EEEcCc-hhH----hHHHHHHhCCCeEEEEEeCCceeeee-eecC-----C-----CCCCC-CCCCHHHHHHHhcCCCCC
Q 007917 462 ACIGDG-SFQ----EISTMIRCGQRSIIFLINNGGYTIEV-EIHD-----G-----PYNVI-KNWDYTGLVNAIHNGEGK 524 (585)
Q Consensus 462 ~v~GDG-sf~----eL~ta~~~~lpv~ivV~NN~~~~~~~-~~~~-----~-----~~~~~-~~~d~~~la~a~G~~~~~ 524 (585)
+++||| +|+ ||.|++|+|+|+++||+||+.|++.. +... . ++... .++||.++|+++|+
T Consensus 82 ~i~GDG~~f~ig~~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~---- 157 (279)
T PRK11866 82 GYGGDGDGYGIGLGHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGA---- 157 (279)
T ss_pred EEECChHHHHccHHHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCC----
Confidence 999999 576 99999999999999999999999932 2111 1 11111 23599999999999
Q ss_pred ccEEEe---cCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCC
Q 007917 525 CWTAKV---RSEDELTEAMKTATGEQKDSLCFIEVFVHKDDT 563 (585)
Q Consensus 525 ~~~~~v---~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~ 563 (585)
.++.. .++++|+++|++|++ .+||+||||....-..
T Consensus 158 -~~Va~~~~~~~~~l~~~l~~Al~--~~Gps~I~v~~pC~~~ 196 (279)
T PRK11866 158 -TFVARGFSGDVKHLKEIIKEAIK--HKGFSFIDVLSPCVTF 196 (279)
T ss_pred -CEEEEEcCCCHHHHHHHHHHHHh--CCCCEEEEEeCCCCCC
Confidence 66655 789999999999997 8999999999886544
No 99
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.89 E-value=6.1e-23 Score=202.24 Aligned_cols=157 Identities=18% Similarity=0.174 Sum_probs=120.2
Q ss_pred CCHHHHHHHHHhhC------CCCCEEEecCCccccccccccccCCCeeEeccCc-ccccchHHHHHHHhhhcCCCcEEEE
Q 007917 391 LRVNVLFKHIQDML------SGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQY-GSIGWSVGATLGYAQAAKDKRVIAC 463 (585)
Q Consensus 391 ~~~~~~~~~L~~~l------~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lpaAiGaalA~p~~~vv~v 463 (585)
+....+++.|.+.+ |++.++++|+|++... + +++...++ +.||+++|+|+|+++|+|+++||++
T Consensus 7 Cg~~~i~~~~~~a~~~l~~~p~d~iivsdiGc~~~~------~---~~l~~~~~~t~mG~alPaAiGaklA~Pd~~VVai 77 (287)
T TIGR02177 7 CGDFGILSALQRALAELNLDPEQVVVVSGIGCSAKT------P---HYVNVNGFHGLHGRALPVATGIKLANPHLKVIVV 77 (287)
T ss_pred CCChHHHHHHHHHHHHhcCCCCCEEEEECCCccccc------C---CeEecCCcccccccHHHHHHHHHHHCCCCcEEEE
Confidence 44444444444433 6788999999998732 1 14555555 5689999999999999999999999
Q ss_pred EcCchhH-----hHHHHHHhCCCeEEEEEeCCceeeeeeec-----CC------CCCCC---CCCCHHHHHHHhcCCCCC
Q 007917 464 IGDGSFQ-----EISTMIRCGQRSIIFLINNGGYTIEVEIH-----DG------PYNVI---KNWDYTGLVNAIHNGEGK 524 (585)
Q Consensus 464 ~GDGsf~-----eL~ta~~~~lpv~ivV~NN~~~~~~~~~~-----~~------~~~~~---~~~d~~~la~a~G~~~~~ 524 (585)
+|||+|+ ||.||+|+|+|+++||+||+.||+...+. .+ ++... .+++|.++|+++|.
T Consensus 78 ~GDG~f~~mg~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~---- 153 (287)
T TIGR02177 78 GGDGDLYGIGGNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTF---- 153 (287)
T ss_pred eCchHHHhccHHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCCCe----
Confidence 9999975 99999999999999999999999832111 01 11111 25678888888887
Q ss_pred ccEEE-ecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCC
Q 007917 525 CWTAK-VRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDT 563 (585)
Q Consensus 525 ~~~~~-v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~ 563 (585)
.+.. +.++++|+++|++|++ .+||+||||.+..-..
T Consensus 154 -va~~~~~~~~eL~~ai~~Al~--~~GpslIeV~~pC~t~ 190 (287)
T TIGR02177 154 -VARGFSGDVAHLKEIIKEAIN--HKGYALVDILQPCVTY 190 (287)
T ss_pred -EEEEecCCHHHHHHHHHHHHh--CCCCEEEEEeCCCCCC
Confidence 5565 6899999999999997 8999999999885444
No 100
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.88 E-value=5.8e-20 Score=209.45 Aligned_cols=480 Identities=14% Similarity=0.041 Sum_probs=294.0
Q ss_pred cccCCcccHHHHHHHHHHH-------cCC---CEEEecCCCChHHHHHhhhcCCC------CeEEecCchhhHHHhhhhh
Q 007917 21 RGGASVGTLGRHLARRLVE-------IGA---KDVFSVPGDFNLTLLDHLIAEPE------LNLVGCCNELNAGYAADGY 84 (585)
Q Consensus 21 ~~~~~~~~~a~~i~~~L~~-------~Gv---~~vFg~PG~~~~~l~~al~~~~~------i~~i~~~~E~~A~~~A~gy 84 (585)
+.+...++|.|+|++.+.+ .|+ .+|-|+||+++..+.+.|.+..+ |.+.+..||..|+-+|.|-
T Consensus 14 ~~g~~~l~GneAivr~~l~q~~~d~~aG~~ta~~vsgYpGsP~~~i~~~l~~~~~~l~~~~i~~e~~~NEkvA~e~a~Ga 93 (1159)
T PRK13030 14 TRGRIFLTGTQALVRLLLMQRRRDRARGLNTAGFVSGYRGSPLGGVDQALWKAKKLLDASDIRFLPGINEELAATAVLGT 93 (1159)
T ss_pred ccCCEeeeHHHHHHHHHHHhhhHHHhcCCCccceEEEeCCCCHHHHHHHHHHhhhhhcccceEEeecCCHHHHHHHHHHh
Confidence 3346679999999999999 999 99999999999999999976543 9999999999999999997
Q ss_pred hhh--------cCccEEEEeCCcchHHHHHHHHHhhhcCC----cEEEEeCCCCCccCCCccceeeccCCCChHHHHHHh
Q 007917 85 ARS--------RGVGACVVTFTVGGLSVLNAIAGAYSENL----PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCF 152 (585)
Q Consensus 85 ar~--------tg~~v~~~t~GpG~~n~~~gl~~A~~~~~----Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 152 (585)
+++ .|.-.+..--+||+-=+.-++..+.+.++ -||+|+||.|... ++++.|..+...++
T Consensus 94 q~~~~~~~~~~~Gv~~l~~~K~~GvnvaaD~l~~~n~~G~~~~GG~v~v~gDDpg~~---------SSq~eqdSr~~~~~ 164 (1159)
T PRK13030 94 QQVEADPERTVDGVFAMWYGKGPGVDRAGDALKHGNAYGSSPHGGVLVVAGDDHGCV---------SSSMPHQSDFALIA 164 (1159)
T ss_pred ccccccCCccccceEEEEecCcCCcccchhHHHHHHhhcCCCCCcEEEEEecCCCCc---------cCcCHHHHHHHHHH
Confidence 733 33312234567887778899988777776 4999999988873 44444433444444
Q ss_pred hhceeEEEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCCCCCCCCCCCCCC-----CCC--ccCCC----CC-CC---
Q 007917 153 QAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARD-----PVP--FFLAP----KV-SN--- 217 (585)
Q Consensus 153 ~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~~~~~~~~~~~-----~~~--~~~~~----~~-~~--- 217 (585)
..+ -..+..+++++.++...||.++....-||-+..-.++.+....+...+ ..+ +..++ .. ..
T Consensus 165 a~i--Pvl~Ps~~qE~~d~~~~a~~lSr~~~~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~~~~~r~~~~p~ 242 (1159)
T PRK13030 165 WHM--PVLNPANVQEYLDFGLYGWALSRYSGAWVGFKAISETVESGSTVDLDPDRTRWPAPEDFTPPAGGLHNRWPDLPS 242 (1159)
T ss_pred cCC--ceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCccccCCCcccccccCCCCcH
Confidence 444 345667999999999999999988788999998888866432221100 001 11111 00 00
Q ss_pred ---hhhHHHHHHHHHHHHHhcC--C--------CEEEeCcccchhchHHHHHHHH------HHhCCCeEEccCCccCCCC
Q 007917 218 ---QLGLEAAVEATADFLNKAV--K--------PVLVGGPNIRVAKAQKAFIELA------DATGYPIAIMPSGKGLVPE 278 (585)
Q Consensus 218 ---~~~~~~~~~~~~~~l~~a~--r--------pvIi~G~g~~~~~a~~~l~~la------e~l~~Pv~~t~~gkg~~~~ 278 (585)
.......+..+.+.-...+ + .+-|+..|..+....+++..|. +.+|+.++. +.-
T Consensus 243 ~~~~~~~~~rl~~~~~~~~~~~ln~~~~~~~~~~iGIItsG~ay~~v~EAL~~Lgl~~~~~~~lgirilK-------vgm 315 (1159)
T PRK13030 243 LAIEARLAAKLPAVRAFARANSIDRWVAPSPDARVGIVTCGKAHLDLMEALRRLGLDDADLRAAGIRIYK-------VGL 315 (1159)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceeccCCCCCEEEEEeCccHHHHHHHHHHcCCCcccccccCccEEE-------eCC
Confidence 0011122333333222111 1 1444445554444455554431 123344443 112
Q ss_pred CCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccC--Ccccc--cccccCC-CcceEEEc-CCceeecCCCccccccHH
Q 007917 279 HHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFN--DYSSV--GYSLLIK-KEKAIIVQ-PHRVTVGNGPSLGWVFMA 352 (585)
Q Consensus 279 ~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~--~~~~~--~~~~~~~-~~~~i~id-~~~~~~~~~~~~~~~~~~ 352 (585)
.+|| ......++++..|-||+|-..-+ +.... .+..... ..+++-.. .+...+ .+..+++++.
T Consensus 316 ~~PL---------~~~~i~~F~~g~d~VlVVEE~~p~iE~Qlk~~l~~~~~~~~~~v~GK~~~~G~pl--lp~~gEl~~~ 384 (1159)
T PRK13030 316 SWPL---------EPTRLREFADGLEEILVIEEKRPVIEQQIKDYLYNRPGGARPRVVGKHDEDGAPL--LSELGELRPS 384 (1159)
T ss_pred ccCC---------CHHHHHHHHhcCCEEEEEeCCchHHHHHHHHHHHhccccCCceeEEEECCCCCcC--CCCcCCcCHH
Confidence 2333 33457889999999999964322 11111 1110000 11222221 111111 2344567777
Q ss_pred HHHHHHHHHhccCcc--chh----hhh-hc--cCCCCCC-CCCCCCCCCCHHHHHHHHHhhCCCCCEEEecCCccccccc
Q 007917 353 DFLSALAKKLRKNTT--ALE----NYR-RI--YVPPGIP-VKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQ 422 (585)
Q Consensus 353 ~~l~~L~~~l~~~~~--~~~----~~~-~~--~~~~~~~-~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~~ 422 (585)
.+.+.|...+..... ... .+. +. ......+ ..+.-+..|.++..+ .++++.++..|+||+.+..+
T Consensus 385 ~v~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~P~~C~GCPH~~s~-----k~~~~~~~~gdIGC~tl~~~ 459 (1159)
T PRK13030 385 LIAPVLAARLARHKPALDRRARVVDLVAPQILSNEADAVVRTPYFCSGCPHNTST-----KVPEGSIAQAGIGCHFMASW 459 (1159)
T ss_pred HHHHHHHHHHhccCccchhhhccccccccccccccccCCCCCCCcCCCCCCchhh-----ccCCCCEeecCcCHHHHhhc
Confidence 777777665542211 100 110 00 0000011 112223345565555 35578899999999987654
Q ss_pred cccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH-----hHHHHHHhCCCeEEEEEeCCceeee-e
Q 007917 423 KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ-----EISTMIRCGQRSIIFLINNGGYTIE-V 496 (585)
Q Consensus 423 ~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~-----eL~ta~~~~lpv~ivV~NN~~~~~~-~ 496 (585)
.++ ....+.+||.+++.++|.+-+..+++||+++|||+|+ .|..++..+.|++++|++|+.-+|. .
T Consensus 460 ~~~--------~~~~~~~MG~~g~~~~G~a~~~~~~~v~a~iGDgTf~HSG~~al~~AV~~~~nit~~IL~N~~tAMTGg 531 (1159)
T PRK13030 460 MDR--------DTTGLTQMGGEGVDWIGHAPFTETKHVFQNLGDGTYFHSGSLAIRQAVAAGANITYKILYNDAVAMTGG 531 (1159)
T ss_pred ccc--------ccceeeccCccchhhceeccccCCCCEEEEeccchhhhcCHHHHHHHHhcCCCeEEEEEeCCcccccCC
Confidence 322 1234578999999999999887788999999999999 8888999999999999999999982 2
Q ss_pred eecCCCCCCCCCCCHHH---HHHHhcCCCCCccEEEec--CHHH----------------HHHHHHHhhhcCCCCeEEE
Q 007917 497 EIHDGPYNVIKNWDYTG---LVNAIHNGEGKCWTAKVR--SEDE----------------LTEAMKTATGEQKDSLCFI 554 (585)
Q Consensus 497 ~~~~~~~~~~~~~d~~~---la~a~G~~~~~~~~~~v~--~~~e----------------L~~al~~a~~~~~~gp~vI 554 (585)
+-+++ .++..+ ++++.|+ +.+.|. ++.+ ..+++++++. ..+|++||
T Consensus 532 Qp~~g------~i~v~~i~~~~~a~Gv-----~~v~vvsddp~~~~~~~~~~~~~v~~r~~l~~vq~~l~-~~~GvsVi 598 (1159)
T PRK13030 532 QPVDG------SISVPQIARQVEAEGV-----SRIVVVSDEPEKYRGHHLPAGVTVHHRDELDAVQRELR-ETPGVTVL 598 (1159)
T ss_pred CCCCC------CCCHHHHHHHHHhCCC-----cEEEEecCChhhccccccCCCcccccHHHHHHHHHHHh-cCCCcEEE
Confidence 22232 467777 6679999 666654 4433 3346666662 36788877
No 101
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=99.87 E-value=1.7e-19 Score=204.78 Aligned_cols=485 Identities=14% Similarity=0.065 Sum_probs=301.2
Q ss_pred cccccCCcccHHHHHHHHHHH-------cCC---CEEEecCCCChHHHHHhhhcCC------CCeEEecCchhhHHHhhh
Q 007917 19 PVRGGASVGTLGRHLARRLVE-------IGA---KDVFSVPGDFNLTLLDHLIAEP------ELNLVGCCNELNAGYAAD 82 (585)
Q Consensus 19 ~~~~~~~~~~~a~~i~~~L~~-------~Gv---~~vFg~PG~~~~~l~~al~~~~------~i~~i~~~~E~~A~~~A~ 82 (585)
+++.+...++|.|+|++.+.+ .|+ .+|-|+||+++..+.+.|.+.. +|.+.+..||..|+-++.
T Consensus 20 ~~~~g~~~l~G~qAivR~~l~q~~~D~~aG~~ta~~vsGYpGsP~~~id~~l~~~~~~l~~~~i~fe~~~NEkvAae~~~ 99 (1165)
T PRK09193 20 TLERGRVFLTGTQALVRLPLLQRERDRAAGLNTAGFVSGYRGSPLGGLDQELWRAKKHLAAHDIVFQPGLNEDLAATAVW 99 (1165)
T ss_pred ccccCCeeeeHHHHHHHHHHHHhhHHHhcCCCccceEEeeCCCCHHHHHHHHHHhhhhhcccceEEeeccCHHHHHHHHh
Confidence 344456679999999999998 999 9999999999999999997653 499999999999999997
Q ss_pred hhhh--------hcCccEEEEeCCcchHHHHHHHHHhhhcCC----cEEEEeCCCCCccCCCccceeeccCCCChHHHHH
Q 007917 83 GYAR--------SRGVGACVVTFTVGGLSVLNAIAGAYSENL----PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELR 150 (585)
Q Consensus 83 gyar--------~tg~~v~~~t~GpG~~n~~~gl~~A~~~~~----Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~ 150 (585)
|--+ ..|.-.+..--|||+-=+.-++..+.+.++ -||+|+||.|... ++++.|..+...
T Consensus 100 GsQ~~~~~~~a~~~Gv~~l~y~K~pGvn~aaD~l~~~n~~G~~~~GGvv~v~gDDpg~~---------SSq~eqdSr~~~ 170 (1165)
T PRK09193 100 GSQQVNLFPGAKYDGVFGMWYGKGPGVDRSGDVFRHANAAGTSPHGGVLALAGDDHAAK---------SSTLPHQSEHAF 170 (1165)
T ss_pred hhcccccccceeeccceEEEecCcCCccccHhHHHHHHhhcCCCCCcEEEEEecCCCCc---------cccchhhhHHHH
Confidence 7533 334422334567887778889987777776 4999999988873 344333334444
Q ss_pred HhhhceeEEEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCCCCCCCCCCCCCC-----CCC--ccCCCC----C-CC-
Q 007917 151 CFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARD-----PVP--FFLAPK----V-SN- 217 (585)
Q Consensus 151 ~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~~~~~~~~~~~-----~~~--~~~~~~----~-~~- 217 (585)
++..+ -..+..+++++.++...||.++....-||-+..-.++.+....+.... ..+ +..++. . ..
T Consensus 171 ~~a~i--Pvl~Ps~~qE~~d~~~~g~~lSr~~g~pV~lr~~t~v~h~~~~V~~~~~~~~~~~~~~f~~~~~g~~~r~~~~ 248 (1165)
T PRK09193 171 KAAGM--PVLFPANVQEILDYGLHGWAMSRYSGLWVGMKTVTDVVESSASVDVDPDRVQIVLPEDFEMPPGGLNIRWPDP 248 (1165)
T ss_pred HHcCC--ceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeeeeeEEcCCCcccCCCcccccCCcccccccCCCC
Confidence 44444 345567899999999999999988778999998888866432221100 000 111110 0 00
Q ss_pred -----hhhHHHHHHHHHHHHHhc----------CCCEEEeCcccchhchHHHHHHH------HHHhCCCeEEccCCccCC
Q 007917 218 -----QLGLEAAVEATADFLNKA----------VKPVLVGGPNIRVAKAQKAFIEL------ADATGYPIAIMPSGKGLV 276 (585)
Q Consensus 218 -----~~~~~~~~~~~~~~l~~a----------~rpvIi~G~g~~~~~a~~~l~~l------ae~l~~Pv~~t~~gkg~~ 276 (585)
.......+..+.+..... +.-+-|+..|..+....+.|..| ++.+|++++. +
T Consensus 249 p~~~~~~~~~~rl~a~~a~a~~n~ln~~~~~~~~~~iGIItsG~~y~~v~eal~~lg~~~~~~~~~gi~ilK-------v 321 (1165)
T PRK09193 249 PLEQEARLLDYKLYAALAYARANKLDRVVIDSPNARLGIVAAGKAYLDVRQALRDLGLDEETAARLGIRLYK-------V 321 (1165)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCCCCCEEEEecCccHHHHHHHHHHcCCChhhhcccCCCEEE-------e
Confidence 001112233333322101 11255666666665566666653 4456677776 3
Q ss_pred CCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCc--cCCcccccccccCCCc--ceEEEcCCce--eecCCCcccccc
Q 007917 277 PEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPI--FNDYSSVGYSLLIKKE--KAIIVQPHRV--TVGNGPSLGWVF 350 (585)
Q Consensus 277 ~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~--~~~~~~~~~~~~~~~~--~~i~id~~~~--~~~~~~~~~~~~ 350 (585)
.-.+||. .....++.+..|-||+|-.. +-+..........+.. .-|.--.|+. .+ .+..++++
T Consensus 322 gm~~PL~---------~~~i~~Fa~g~~~vlVVEE~~p~iE~qlk~~l~~~~~~~rp~v~GK~~~~g~~l--lp~~gEl~ 390 (1165)
T PRK09193 322 GMVWPLE---------PQGVRAFAEGLDEILVVEEKRQIIEYQLKEELYNWPDDVRPRVIGKFDPQGNWL--LPAHGELS 390 (1165)
T ss_pred CCCCCCC---------HHHHHHHHhcCCEEEEEecCchHHHHHHHHHHhhccCCcCceeEeeeCCCCCcc--CCCcCCcC
Confidence 3344542 34577888999999999643 2221111100000110 0121111111 01 23345667
Q ss_pred HHHHHHHHHHHhccCc-----cc-hh---hhhhcc-----CCCCC-CCCCCCCCCCCHHHHHHHHHhhCCCCCEEEecCC
Q 007917 351 MADFLSALAKKLRKNT-----TA-LE---NYRRIY-----VPPGI-PVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETG 415 (585)
Q Consensus 351 ~~~~l~~L~~~l~~~~-----~~-~~---~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d~G 415 (585)
+..+.+.|...+.... .. .. .+.... ..... ...+.-+..|.++..++ +|++.++..|+|
T Consensus 391 ~~~va~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~P~fCsGCPH~~st~-----vp~gs~~~~dIG 465 (1165)
T PRK09193 391 PAIIAKAIARRLLKLELPGDVRARIAARLAVLEAKEAALALPRVTAARTPYFCSGCPHNTSTR-----VPEGSRALAGIG 465 (1165)
T ss_pred HHHHHHHHHHHhhhcccccccchhhhhcccccccccccccccccCCCCCCCcCCCCCCcccee-----cCCCCEEecCcC
Confidence 7777777765543210 00 00 000000 00000 11111223455555544 488899999999
Q ss_pred ccccccccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH-----hHHHHHHhCCCeEEEEEeCC
Q 007917 416 DSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ-----EISTMIRCGQRSIIFLINNG 490 (585)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~-----eL~ta~~~~lpv~ivV~NN~ 490 (585)
|+.+..+. |.. + .++.+||.+++.++|.+-...+++||+++|||+|+ .|..|+..+.|++++|++|+
T Consensus 466 Chtl~~~~---p~~----~-~~~~~MG~eg~~~~G~a~f~~~~hv~a~iGDgTffHSG~~al~~AV~~~~nit~~IL~N~ 537 (1165)
T PRK09193 466 CHYMATWM---DRN----T-STFTQMGGEGVPWIGQAPFTDEKHVFQNLGDGTYFHSGLLAIRAAVAAGVNITYKILYND 537 (1165)
T ss_pred hhhhccCC---CCC----C-CeeeccCCcchhhceeccccCCCcEEEEeccccchhcCHHHHHHHHhcCCCeEEEEEeCC
Confidence 99876542 111 1 44678999999999998887788999999999999 88889999999999999999
Q ss_pred ceee-eeeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEec--CHHHHH-----------------HHHHHhhhcCCCC
Q 007917 491 GYTI-EVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELT-----------------EAMKTATGEQKDS 550 (585)
Q Consensus 491 ~~~~-~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~eL~-----------------~al~~a~~~~~~g 550 (585)
.-+| ..+-+++. +..+++++++++.|+ +.+.+. ++.+++ +++++++. ..+|
T Consensus 538 ~vAMTGgQ~~~g~---~~~~~i~~~~~a~GV-----~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~lr-~~~G 608 (1165)
T PRK09193 538 AVAMTGGQPVDGG---LSVPQITRQLAAEGV-----KRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQRELR-EIPG 608 (1165)
T ss_pred cccccCCCCCCCC---cchhhHHHHHHhCCC-----CEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHHh-cCCC
Confidence 9998 23333333 467899999999999 666554 555553 45556662 3678
Q ss_pred eEEE
Q 007917 551 LCFI 554 (585)
Q Consensus 551 p~vI 554 (585)
++||
T Consensus 609 vsVi 612 (1165)
T PRK09193 609 VTVL 612 (1165)
T ss_pred cEEE
Confidence 8877
No 102
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=99.83 E-value=2.3e-17 Score=187.13 Aligned_cols=483 Identities=14% Similarity=0.072 Sum_probs=292.2
Q ss_pred ccccCCcccHHHHHHHHH-------HHcCCC---EEEecCCCChHHHHHhhhcC------CCCeEEecCchhhHHHhhhh
Q 007917 20 VRGGASVGTLGRHLARRL-------VEIGAK---DVFSVPGDFNLTLLDHLIAE------PELNLVGCCNELNAGYAADG 83 (585)
Q Consensus 20 ~~~~~~~~~~a~~i~~~L-------~~~Gv~---~vFg~PG~~~~~l~~al~~~------~~i~~i~~~~E~~A~~~A~g 83 (585)
++.+...++|.|+||+.+ .+.|++ +|-|+||+++..+.++|.+. .+|.+.+..||..|+-|..|
T Consensus 24 ~~~g~~~l~G~qAlvR~~l~q~~~D~~aGl~tag~vsgYpGSPl~~id~~l~~~~~~l~~~~i~fe~~~NEklAatav~G 103 (1186)
T PRK13029 24 LERGRIYISGTQALVRLPLLQRARDRRAGLNTAGFISGYRGSPLGALDQALWKAKKHLAAADVVFQPGVNEELAATAVWG 103 (1186)
T ss_pred cccCCEeecHHHHHHHHHHHHhHHHHHcCCCccceEEecCCCCHHHHHHHHHHHhhhccccceEEeecCCHHHHHHHhhh
Confidence 344566799999999999 999999 99999999999999999653 25999999999999999988
Q ss_pred hhhhc----Cc--cEE--EEeCCcchHHHHHHHHHhh--hcCC--cEEEEeCCCCCccCCCccceeeccCCCChHHHHHH
Q 007917 84 YARSR----GV--GAC--VVTFTVGGLSVLNAIAGAY--SENL--PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRC 151 (585)
Q Consensus 84 yar~t----g~--~v~--~~t~GpG~~n~~~gl~~A~--~~~~--Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 151 (585)
-.++- ++ ||. ...-|||+-=+.-++..+. ..++ -||+|+||.|... ++++.|..+...+
T Consensus 104 sq~~e~~~~a~~dGv~~lwygK~pGvn~aaD~l~h~n~~gt~~~GGvv~v~gDDpg~~---------SSq~eqdSr~~~~ 174 (1186)
T PRK13029 104 SQQLELDPGAKRDGVFGMWYGKGPGVDRSGDALRHANLAGTSPLGGVLVLAGDDHGAK---------SSSVAHQSDHTFI 174 (1186)
T ss_pred hhhcccccceeeccceEEEecCcCCcccchhHHHHhhccccCCCCcEEEEEecCCCCc---------cccCHHHHHHHHH
Confidence 66532 11 333 3456788766778887555 3333 3999999988773 3443333344444
Q ss_pred hhhceeEEEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCCCCCCCCCCCCCC-C----CC--ccCCC-----CCCC--
Q 007917 152 FQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARD-P----VP--FFLAP-----KVSN-- 217 (585)
Q Consensus 152 ~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~~~~~~~~~~~-~----~~--~~~~~-----~~~~-- 217 (585)
+..+ -..+..+++++.++...||.++....-||-+..-.++.+....++..+ . .+ +..++ ....
T Consensus 175 ~a~i--Pvl~Ps~~qE~~d~~~~a~~lSr~~g~~V~lr~~t~v~~s~~~V~~~~~r~~~~~p~~f~~~~~g~~~r~~~~p 252 (1186)
T PRK13029 175 AWGI--PVLYPASVQDYLDYGLHGWAMSRYSGLWVGMKCVTEVVESTASVDLDPDRVDIVLPDDFVLPPGGLHIRWPDDP 252 (1186)
T ss_pred HcCC--ceeCCCCHHHHHHHHHHHHHHHHHhCCCEEEEEeeeeeecceeeecCCcccccCCcccccCCccccccccCCCc
Confidence 4433 345567899999999999999988788999999999876533221100 0 01 11111 0000
Q ss_pred ----hhhHHHHHHHHHHHHHhc----------CCCEEEeCcccchhchHHHHHHH------HHHhCCCeEEccCCccCCC
Q 007917 218 ----QLGLEAAVEATADFLNKA----------VKPVLVGGPNIRVAKAQKAFIEL------ADATGYPIAIMPSGKGLVP 277 (585)
Q Consensus 218 ----~~~~~~~~~~~~~~l~~a----------~rpvIi~G~g~~~~~a~~~l~~l------ae~l~~Pv~~t~~gkg~~~ 277 (585)
.......+..+.+..... ...+-|+..|..+....++|.+| ++++|++++. +.
T Consensus 253 ~~~e~~~~~~kl~a~~a~a~~n~ln~~~~~~~~~~~GIItsG~~y~~v~eAl~~lgl~~~~~~~~gi~ilK-------vg 325 (1186)
T PRK13029 253 LAQEERMLEFKWYAALAYVRANRLNRLVIDGPNPRLGIIAAGKAYLDVRQALRDLGLDDATCAALGIRLLK-------VG 325 (1186)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCEEeccCCCCCEEEEecCccHHHHHHHHHHcCCChhhccccCCCEEE-------eC
Confidence 001111233333322111 11245555566555566666542 4456677776 33
Q ss_pred CCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCc--cCCcccccccccCCCc--ceEEEcCC---c------eeec--C
Q 007917 278 EHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPI--FNDYSSVGYSLLIKKE--KAIIVQPH---R------VTVG--N 342 (585)
Q Consensus 278 ~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~--~~~~~~~~~~~~~~~~--~~i~id~~---~------~~~~--~ 342 (585)
-.+|| ......++.+..|-||+|-.. +-+..........+.. .-|.=-.| . .+-| -
T Consensus 326 m~~PL---------~~~~i~~Fa~g~d~vlVVEE~~p~iE~qlk~~l~~~~~~~rp~v~GK~~~~~~~~~~~~~~~g~~l 396 (1186)
T PRK13029 326 CVWPL---------DPQSVREFAQGLEEVLVVEEKRAVIEYQLKEELYNWREDVRPAIFGKFDHRDGAGGEWSVPAGRWL 396 (1186)
T ss_pred CCCCC---------CHHHHHHHHhcCCEEEEEecCchHHHHHHHHHHhhccCCcCCeeEecccccccccccccccccCCC
Confidence 33444 234578889999999999543 2222111000000100 01211111 0 0001 0
Q ss_pred CCccccccHHHHHHHHHHHhccC---c--cc-hh---hhhhc-----cCCCCCC-CCCCCCCCCCHHHHHHHHHhhCCCC
Q 007917 343 GPSLGWVFMADFLSALAKKLRKN---T--TA-LE---NYRRI-----YVPPGIP-VKRAQNEPLRVNVLFKHIQDMLSGD 407 (585)
Q Consensus 343 ~~~~~~~~~~~~l~~L~~~l~~~---~--~~-~~---~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~L~~~l~~~ 407 (585)
.+..+++++..+.+.|...+... . .. .. .+... ......+ ..+.-+..|.++..++. |++
T Consensus 397 lp~~gEL~p~~va~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~R~P~fCsGCPH~~st~~-----~~g 471 (1186)
T PRK13029 397 LPAHAELSPALIAKAIARRLAALGLPADVAARMDARVADIEAKERAAAQPRLLTERKPWFCSGCPHNTSTRV-----PEG 471 (1186)
T ss_pred CCcccCcCHHHHHHHHHHHHHhcCCCcccchhhhhhhhhcccccccccccccCCCCCCCcCCCCCCchhhcc-----CCC
Confidence 12345667777777776655221 0 00 00 01000 0001000 11222334556655543 678
Q ss_pred CEEEecCCccccccccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH-----hHHHHHHhCCCe
Q 007917 408 TAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ-----EISTMIRCGQRS 482 (585)
Q Consensus 408 ~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~-----eL~ta~~~~lpv 482 (585)
.++..|+||+.+..+..+. ..++.+||.+...++|.+-...+++|++++|||+|+ .|..++..+.|+
T Consensus 472 s~~~~dIGChtl~~~~~~~--------~~~~~~MGgeg~~~~G~a~f~~~~hv~aniGDgTffHSG~~alr~AV~~~~ni 543 (1186)
T PRK13029 472 SRALAGIGCHYMAMWMDRS--------TEGFSQMGGEGVAWIGQMPFSRRRHVFQNLGDGTYFHSGLLAIRQAIAAGVNI 543 (1186)
T ss_pred CEEecCcCHHHHhhccccc--------cceeeccCcchhhheeecccCCCCCEEEEeccccchhcCHHHHHHHHhcCCCE
Confidence 8999999999876543221 234678999999999999887788999999999999 888889999999
Q ss_pred EEEEEeCCceeee-eeecCCCCCCCCCCCHHH---HHHHhcCCCCCccEEEecC--HHHH-----------------HHH
Q 007917 483 IIFLINNGGYTIE-VEIHDGPYNVIKNWDYTG---LVNAIHNGEGKCWTAKVRS--EDEL-----------------TEA 539 (585)
Q Consensus 483 ~ivV~NN~~~~~~-~~~~~~~~~~~~~~d~~~---la~a~G~~~~~~~~~~v~~--~~eL-----------------~~a 539 (585)
+++|++|+.-+|. .+-+++ .++..+ +.++.|+ +.+.|.+ ++++ .++
T Consensus 544 t~kIL~N~avAMTGgQp~~G------~~~v~~i~~~~~a~GV-----~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~ 612 (1186)
T PRK13029 544 TYKILYNDAVAMTGGQPVDG------VLTVPQIARQVHAEGV-----RRIVVVTDEPGKYRGVARLPAGVTVHHRDELDA 612 (1186)
T ss_pred EEEEEeCcchhccCCCCCCC------cCCHHHHHHHHHhCCc-----cEEEEeCCCccccccccccCCccccccHHHHHH
Confidence 9999999999982 222232 356666 6699998 6665543 4333 345
Q ss_pred HHHhhhcCCCCeEEE
Q 007917 540 MKTATGEQKDSLCFI 554 (585)
Q Consensus 540 l~~a~~~~~~gp~vI 554 (585)
+++.+. +.+|++||
T Consensus 613 vq~~lr-~~~GvsVi 626 (1186)
T PRK13029 613 VQRELR-EVPGVSVL 626 (1186)
T ss_pred HHHHHh-cCCCcEEE
Confidence 555552 36788877
No 103
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.72 E-value=2.7e-17 Score=162.70 Aligned_cols=120 Identities=22% Similarity=0.246 Sum_probs=102.6
Q ss_pred cCcccccchHHHHHHHhhhcC----CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCC
Q 007917 436 MQYGSIGWSVGATLGYAQAAK----DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNV 505 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~p----~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~ 505 (585)
...|+||+++|+|+|+++|.+ +++|+|++|||+|+ +|.++.++++|.+++|+||++|++... ....
T Consensus 102 ~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~----~~~~ 177 (255)
T cd02012 102 VTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGP----TDDI 177 (255)
T ss_pred eCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCc----Hhhc
Confidence 456999999999999999866 89999999999998 899999999999999999999997211 1123
Q ss_pred CCCCCHHHHHHHhcCCCCCccEEEec--CHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChH
Q 007917 506 IKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSK 565 (585)
Q Consensus 506 ~~~~d~~~la~a~G~~~~~~~~~~v~--~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~~~ 565 (585)
....||.+++++||+ ++++|+ +.++|.++|+++.+ ..++|++|+++|.+....+
T Consensus 178 ~~~~~~~~~~~a~G~-----~~~~v~G~d~~~l~~al~~a~~-~~~~P~~I~~~t~kg~g~~ 233 (255)
T cd02012 178 LFTEDLAKKFEAFGW-----NVIEVDGHDVEEILAALEEAKK-SKGKPTLIIAKTIKGKGVP 233 (255)
T ss_pred cCchhHHHHHHHcCC-----eEEEECCCCHHHHHHHHHHHHH-cCCCCEEEEEEeecccccC
Confidence 357899999999999 899999 99999999999985 2289999999998765443
No 104
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.66 E-value=3.4e-16 Score=157.81 Aligned_cols=115 Identities=21% Similarity=0.172 Sum_probs=95.4
Q ss_pred cCcccccchHHHHHHHhhhc----CCCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCC
Q 007917 436 MQYGSIGWSVGATLGYAQAA----KDKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNV 505 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~----p~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~ 505 (585)
.+.|+||+++|.|+|+++|. ++++||+++|||+|+ +|++|.++++|+++||.||+ |++..... ..
T Consensus 101 ~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~-~~i~~~~~----~~ 175 (293)
T cd02000 101 GGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNG-YAISTPTS----RQ 175 (293)
T ss_pred ccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCC-eeccCCHH----HH
Confidence 56799999999999999986 688999999999996 69999999999999999995 99832111 11
Q ss_pred CCCCCHHHHHHHhcCCCCCccEEEec--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007917 506 IKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHK 560 (585)
Q Consensus 506 ~~~~d~~~la~a~G~~~~~~~~~~v~--~~~eL~~al~~a~~--~~~~gp~vIeV~v~~ 560 (585)
.+.+||.++|++||+ ++++|+ +++++.+++++|++ .+.++|+||||.+.+
T Consensus 176 ~~~~~~~~~a~a~G~-----~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r 229 (293)
T cd02000 176 TAGTSIADRAAAYGI-----PGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYR 229 (293)
T ss_pred hCCccHHHHHHhCCC-----CEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Confidence 246899999999999 899997 46788888888774 236799999999875
No 105
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.65 E-value=4.1e-16 Score=159.85 Aligned_cols=113 Identities=20% Similarity=0.151 Sum_probs=93.7
Q ss_pred cCcccccchHHHHHHHhhhc----CCCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCC
Q 007917 436 MQYGSIGWSVGATLGYAQAA----KDKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNV 505 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~----p~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~ 505 (585)
+..+.||+++|.|+|++++. |+++|+|++|||+|+ +|+||+++++|+++||+||+ |++.... ...
T Consensus 119 g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~-~~~~~~~----~~~ 193 (341)
T TIGR03181 119 PPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQ-WAISVPR----SKQ 193 (341)
T ss_pred CCCchHhcchhHHHhHHHHHHhhCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCC-Cccccch----hhh
Confidence 44578999999999999887 899999999999998 68899999999999999996 6651100 011
Q ss_pred CCCCCHHHHHHHhcCCCCCccEEEecCHHHH------HHHHHHhhhcCCCCeEEEEEEcCC
Q 007917 506 IKNWDYTGLVNAIHNGEGKCWTAKVRSEDEL------TEAMKTATGEQKDSLCFIEVFVHK 560 (585)
Q Consensus 506 ~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL------~~al~~a~~~~~~gp~vIeV~v~~ 560 (585)
...+||.++|++||+ ++++|+..+++ +.+++++.. .++|+|||+.+.+
T Consensus 194 ~~~~d~~~~a~a~G~-----~~~~Vdg~d~~av~~a~~~A~~~a~~--~~gP~lIev~t~R 247 (341)
T TIGR03181 194 TAAPTLAQKAIAYGI-----PGVQVDGNDVLAVYAVTKEAVERARS--GGGPTLIEAVTYR 247 (341)
T ss_pred hCCcCHHHHHhhCCC-----CEEEECCCCHHHHHHHHHHHHHHHHc--CCCCEEEEEEeec
Confidence 246799999999999 99999988875 777877775 6899999999976
No 106
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=99.63 E-value=1.1e-15 Score=156.12 Aligned_cols=112 Identities=19% Similarity=0.148 Sum_probs=92.8
Q ss_pred cCcccccchHHHHHHHhhhc-----------CCCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCC-ceeeeee
Q 007917 436 MQYGSIGWSVGATLGYAQAA-----------KDKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNG-GYTIEVE 497 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~-----------p~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~-~~~~~~~ 497 (585)
+++++||+++|.|+|+++|. |++.|+|++|||+|+ +|.+|.++++|+++||.||+ +++...
T Consensus 125 ~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~- 203 (341)
T CHL00149 125 GGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAH- 203 (341)
T ss_pred CCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeecch-
Confidence 57899999999999999994 788999999999999 58999999999999999999 455411
Q ss_pred ecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHH------HHHHHHhhhcCCCCeEEEEEEcCC
Q 007917 498 IHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDEL------TEAMKTATGEQKDSLCFIEVFVHK 560 (585)
Q Consensus 498 ~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL------~~al~~a~~~~~~gp~vIeV~v~~ 560 (585)
. .....+||.++|++||+ .+++|+..+.+ +.+++++.+ .++|+|||+.|.+
T Consensus 204 --~---~~~~~~d~a~~a~a~G~-----~~~~Vdg~d~~av~~a~~~A~~~ar~--~~gP~lIev~tyR 260 (341)
T CHL00149 204 --H---RSTSIPEIHKKAEAFGL-----PGIEVDGMDVLAVREVAKEAVERARQ--GDGPTLIEALTYR 260 (341)
T ss_pred --h---heeCCccHHHHHHhCCC-----CEEEEeCCCHHHHHHHHHHHHHHHHh--CCCCEEEEEEEec
Confidence 0 01135799999999999 99999977754 567777664 7899999999954
No 107
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=99.63 E-value=7.6e-16 Score=156.30 Aligned_cols=115 Identities=18% Similarity=0.135 Sum_probs=93.2
Q ss_pred cCcccccchHHHHHHHhhhc----CCCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCC
Q 007917 436 MQYGSIGWSVGATLGYAQAA----KDKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNV 505 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~----p~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~ 505 (585)
...++||+++|.|+|+++|. +++.||+++|||+|+ +|+++..+++|+++||+||+ |++..... ..
T Consensus 107 ~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~-yg~s~~~~----~~ 181 (315)
T TIGR03182 107 GGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNL-YAMGTSVE----RS 181 (315)
T ss_pred cCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCC-ccccCCHH----HH
Confidence 56799999999999999998 789999999999998 58999999999999999995 99831110 01
Q ss_pred CCCCCHHHHHHHhcCCCCCccEEEecC--HHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007917 506 IKNWDYTGLVNAIHNGEGKCWTAKVRS--EDELTEAMKTATG--EQKDSLCFIEVFVHK 560 (585)
Q Consensus 506 ~~~~d~~~la~a~G~~~~~~~~~~v~~--~~eL~~al~~a~~--~~~~gp~vIeV~v~~ 560 (585)
....||.++|++||+ ++++|+. ..++..++++|++ .+.++|+|||+.+.+
T Consensus 182 ~~~~~~a~~A~a~G~-----~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 235 (315)
T TIGR03182 182 SSVTDLYKRGESFGI-----PGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYR 235 (315)
T ss_pred hCCcCHHHHHHhCCC-----CEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCc
Confidence 245799999999999 9999985 5555556665554 236799999999875
No 108
>PRK05899 transketolase; Reviewed
Probab=99.58 E-value=5.9e-15 Score=164.06 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=99.7
Q ss_pred cCcccccchHHHHHHHhhhcC--------------CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeee
Q 007917 436 MQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIE 495 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~p--------------~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
...|+||+++|+|+|+++|.+ +++|+|++|||+|+ +|.+|.++++|.+++|+||++|++.
T Consensus 115 ~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~ 194 (624)
T PRK05899 115 TTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISID 194 (624)
T ss_pred eCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCccc
Confidence 348999999999999999987 78999999999998 4999999999999999999999983
Q ss_pred eeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEec--CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007917 496 VEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATGEQKDSLCFIEVFVHK 560 (585)
Q Consensus 496 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~eL~~al~~a~~~~~~gp~vIeV~v~~ 560 (585)
+........||.+++++||+ ++++|+ +.++|.++|+++.. .++|+||+|.|.+
T Consensus 195 -----~~~~~~~~~~~~~~~~a~G~-----~~~~VdG~d~~~l~~al~~a~~--~~~P~vI~v~t~k 249 (624)
T PRK05899 195 -----GPTEGWFTEDVKKRFEAYGW-----HVIEVDGHDVEAIDAAIEEAKA--STKPTLIIAKTII 249 (624)
T ss_pred -----ccccccccccHHHHhccCCC-----eEEEECCCCHHHHHHHHHHHHh--cCCCEEEEEEeEe
Confidence 22223346799999999999 999999 99999999999985 6799999999964
No 109
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.55 E-value=1.5e-13 Score=136.11 Aligned_cols=165 Identities=14% Similarity=0.148 Sum_probs=129.0
Q ss_pred CCCCCCHHHHHHHHHhhCCCCCEEEecCCcccccccccc-ccCCCeeEeccCcccccchHHHHHHHhhh----cCCCcEE
Q 007917 387 QNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLR-LPENCGYEFQMQYGSIGWSVGATLGYAQA----AKDKRVI 461 (585)
Q Consensus 387 ~~~~~~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~~~~~-~~~~~~~~~~~~~g~mG~~lpaAiGaalA----~p~~~vv 461 (585)
.+..+...-+++.|.+.+.++.+++.|+||+..+...+. .| +-.+...+.||-+.+.|.|.+.| .++++||
T Consensus 20 ~C~GCg~~~~~~~l~~a~g~~~vi~~~iGC~s~~~~~~p~~~----~~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv 95 (299)
T PRK11865 20 ACAGCGAAIAMRLALKALGKNTVIVVATGCLEVITTPYPETA----WNVPWIHVAFENAAAVASGIERAVKALGKKVNVV 95 (299)
T ss_pred CCcCCCcHHHHHHHHHHcCCCEEEEeCCCcccccCccCcCCc----cccccchhhhcchHHHHHHHHHHHHHhcCCCeEE
Confidence 345688999999999999999999999999987632221 11 22344567889999999998887 3567899
Q ss_pred EEEcCchhH-----hHHHHHHhCCCeEEEEEeCCceeee-eeecCC----------C------CCCCCCCCHHHHHHHhc
Q 007917 462 ACIGDGSFQ-----EISTMIRCGQRSIIFLINNGGYTIE-VEIHDG----------P------YNVIKNWDYTGLVNAIH 519 (585)
Q Consensus 462 ~v~GDGsf~-----eL~ta~~~~lpv~ivV~NN~~~~~~-~~~~~~----------~------~~~~~~~d~~~la~a~G 519 (585)
++.|||+|. .|..+++.+.|+++||+||+.|++. .+.... + +...+..|+..++.++|
T Consensus 96 ~~~GDG~~~dIG~~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g 175 (299)
T PRK11865 96 AIGGDGGTADIGFQSLSGAMERGHNILYLMYDNEAYMNTGIQRSGSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHG 175 (299)
T ss_pred EEeCCchHhhccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcC
Confidence 999999997 8888999999999999999999982 111110 0 11235789999999999
Q ss_pred CCCCCccEE---EecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCC
Q 007917 520 NGEGKCWTA---KVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 562 (585)
Q Consensus 520 ~~~~~~~~~---~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~ 562 (585)
+ .|+ .+.++.++.++|++|++ .+||++|+|....-.
T Consensus 176 ~-----~YVA~~~~~~~~~l~~~i~~A~~--~~Gps~I~v~sPC~~ 214 (299)
T PRK11865 176 I-----PYVATASIGYPEDFMEKVKKAKE--VEGPAYIQVLQPCPT 214 (299)
T ss_pred C-----CEEEEEeCCCHHHHHHHHHHHHh--CCCCEEEEEECCCCC
Confidence 8 444 45689999999999997 889999999987544
No 110
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=99.49 E-value=1.3e-13 Score=144.04 Aligned_cols=113 Identities=17% Similarity=0.098 Sum_probs=89.7
Q ss_pred ccCcccccchHHHHHHHhhh-----------cCCCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCC-ceeeee
Q 007917 435 QMQYGSIGWSVGATLGYAQA-----------AKDKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNG-GYTIEV 496 (585)
Q Consensus 435 ~~~~g~mG~~lpaAiGaalA-----------~p~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~-~~~~~~ 496 (585)
..+++.||+++|.|+|+++| .+++.|||++|||+++ +|.+|..+++|+++||.||+ +++...
T Consensus 190 ~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~ 269 (433)
T PLN02374 190 LGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 269 (433)
T ss_pred CCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCEeeccee
Confidence 36678999999999999999 3678999999999977 79999999999999998887 344311
Q ss_pred eecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHH------HHHHHHhhhcCCCCeEEEEEEcCC
Q 007917 497 EIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDEL------TEAMKTATGEQKDSLCFIEVFVHK 560 (585)
Q Consensus 497 ~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL------~~al~~a~~~~~~gp~vIeV~v~~ 560 (585)
.. . ...+|+.+.|++||+ ++++|+..+.+ +.+++++.+ .++|+|||+.+-+
T Consensus 270 ~~---~---t~~~dia~~A~a~G~-----~~~~VDG~D~~av~~a~~~A~~~Ar~--g~gP~LIe~~tyR 326 (433)
T PLN02374 270 LR---A---TSDPEIWKKGPAFGM-----PGVHVDGMDVLKVREVAKEAIERARR--GEGPTLVECETYR 326 (433)
T ss_pred ee---c---cCCCCHHHHHHhcCC-----cEEEECCCCHHHHHHHHHHHHHHHHH--cCCCEEEEEEEEe
Confidence 11 0 135699999999999 99999866544 456666654 7899999999853
No 111
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.47 E-value=1.1e-12 Score=129.90 Aligned_cols=164 Identities=12% Similarity=0.126 Sum_probs=124.7
Q ss_pred CCCCHHHHHHHHHhhCCCCCEEEecCCccccccccccccCCCeeEeccCcccccchHHHHHHHhhhc-----CCCcEEEE
Q 007917 389 EPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAA-----KDKRVIAC 463 (585)
Q Consensus 389 ~~~~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~-----p~~~vv~v 463 (585)
..+...-+++.+.+.+.++.+++.|+||+......+ |.. .+-.+.....||.+++.|.|+++|. ++..|+++
T Consensus 22 ~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~--p~~-~~~~~~i~~~~G~~~~~A~G~a~A~~~~~~~~~~Vva~ 98 (300)
T PRK11864 22 PGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDT--PKS-PLTVPVLHTAFAATAAVASGIEEALKARGEKGVIVVGW 98 (300)
T ss_pred CCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCC--Ccc-cccccceeehhhChHHHHHHHHHHHHhhCCCCcEEEEE
Confidence 456777788889999999999999999987532222 111 0223344688999999999999985 45667779
Q ss_pred EcCchhH-----hHHHHHHhCCCeEEEEEeCCceeee-eeecCC----------C-CCCCCCCCHHHHHHHhcCCCCCcc
Q 007917 464 IGDGSFQ-----EISTMIRCGQRSIIFLINNGGYTIE-VEIHDG----------P-YNVIKNWDYTGLVNAIHNGEGKCW 526 (585)
Q Consensus 464 ~GDGsf~-----eL~ta~~~~lpv~ivV~NN~~~~~~-~~~~~~----------~-~~~~~~~d~~~la~a~G~~~~~~~ 526 (585)
.|||++. .|..|+..++|+++||+||..|++. .+.++. + ....+..|..+++.++|+ .
T Consensus 99 ~GDG~~~~~g~~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~-----~ 173 (300)
T PRK11864 99 AGDGGTADIGFQALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAHKV-----P 173 (300)
T ss_pred EccCccccccHHHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHcCC-----C
Confidence 9999998 7888899999999999999999982 222211 1 112367899999999998 4
Q ss_pred EE---EecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCC
Q 007917 527 TA---KVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 562 (585)
Q Consensus 527 ~~---~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~ 562 (585)
++ .+-++.++.+++++|++ .+||.+|++....-.
T Consensus 174 yVA~~~~~~~~~~~~~i~~A~~--~~Gps~I~~~spC~~ 210 (300)
T PRK11864 174 YVATASIAYPEDFIRKLKKAKE--IRGFKFIHLLAPCPP 210 (300)
T ss_pred EEEEEeCCCHHHHHHHHHHHHh--CCCCEEEEEeCCCCC
Confidence 54 23478899999999997 889999999987543
No 112
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=99.44 E-value=3.5e-13 Score=121.91 Aligned_cols=130 Identities=16% Similarity=0.148 Sum_probs=96.1
Q ss_pred HHHHHHHHhcCCCEEEeCcccch-hchHHHHHHHHHHhCCCeEEccC------CccCCCCCCCCceeeecCCCCCHHHHH
Q 007917 226 EATADFLNKAVKPVLVGGPNIRV-AKAQKAFIELADATGYPIAIMPS------GKGLVPEHHPHFIGTYWGAVSSSFCGE 298 (585)
Q Consensus 226 ~~~~~~l~~a~rpvIi~G~g~~~-~~a~~~l~~lae~l~~Pv~~t~~------gkg~~~~~hp~~~G~~~g~~~~~~~~~ 298 (585)
++++++|++||||+|++|.|+.. .++.+++.+|+|++++||++|++ +||++++ |.++|.. |.++.+...+
T Consensus 25 ~~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~--~~~lg~l-g~~~~~p~~e 101 (171)
T PRK00945 25 KIAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAK--YINLHEL-TNYLKDPNWK 101 (171)
T ss_pred HHHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCC--cccHHHH-HhhccCchhh
Confidence 47789999999999999999987 78899999999999999999999 9999988 9998885 6677777888
Q ss_pred Hh---hhCCEEEEeCCccCCccc--ccccccCCCcceEEEcCCceeecCCCccccccHHHHHHHHHH
Q 007917 299 IV---ESADAYVFVGPIFNDYSS--VGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAK 360 (585)
Q Consensus 299 ~l---~~aD~vl~lG~~~~~~~~--~~~~~~~~~~~~i~id~~~~~~~~~~~~~~~~~~~~l~~L~~ 360 (585)
.+ .++|+||++|+++.-... .....+.+ .+.|.++.... ......++.++-+..++.|.+
T Consensus 102 ~~~g~~~~DlvlfvG~~~~~~~~~l~~lk~f~~-~~~~~~~~~y~-~~a~~s~~~~~~~~~~~~l~~ 166 (171)
T PRK00945 102 GLDGNGNYDLVIFIGVTYYYASQGLSALKHFSP-LKTITIDRYYH-PNADMSFPNLSKEEYLEYLDE 166 (171)
T ss_pred hhcCCCCcCEEEEecCCchhHHHHHHHHhhcCC-ceEEEecCCcC-CCCceecCCCCHHHHHHHHHH
Confidence 88 799999999998743222 12223334 56777765431 110122444555555555544
No 113
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.43 E-value=6.7e-13 Score=125.34 Aligned_cols=108 Identities=21% Similarity=0.300 Sum_probs=87.2
Q ss_pred cCcccccchHHHHHHHhhhcC----CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCC
Q 007917 436 MQYGSIGWSVGATLGYAQAAK----DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNV 505 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~p----~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~ 505 (585)
...|++|.++|.|+|+++|.+ +++|+|++|||+|+ +|.+|.++++|+++ |+||++|++ .++..
T Consensus 72 ~~~G~lG~gl~~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~-vvdnN~~~~-----~~~~~- 144 (195)
T cd02007 72 FGTGHSSTSISAALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIV-ILNDNEMSI-----SPNVG- 144 (195)
T ss_pred ECCCchhhhHHHHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEE-EEECCCccc-----CCCCC-
Confidence 467999999999999999876 68999999999996 88999999889877 666666775 11111
Q ss_pred CCCCCHHHHHHHhcCCCCCccEEE-e--cCHHHHHHHHHHhhhcCCCCeEEEEEEcCCC
Q 007917 506 IKNWDYTGLVNAIHNGEGKCWTAK-V--RSEDELTEAMKTATGEQKDSLCFIEVFVHKD 561 (585)
Q Consensus 506 ~~~~d~~~la~a~G~~~~~~~~~~-v--~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~ 561 (585)
++..++++||+ .... + .+.+++.++++++.+ .++|++|++.|.+.
T Consensus 145 ----~~~~~~~a~G~-----~~~~~vdG~d~~~l~~a~~~a~~--~~~P~~I~~~T~kg 192 (195)
T cd02007 145 ----TPGNLFEELGF-----RYIGPVDGHNIEALIKVLKEVKD--LKGPVLLHVVTKKG 192 (195)
T ss_pred ----CHHHHHHhcCC-----CccceECCCCHHHHHHHHHHHHh--CCCCEEEEEEEecc
Confidence 58889999998 4443 4 589999999999885 68999999998753
No 114
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=99.43 E-value=3.7e-13 Score=120.98 Aligned_cols=130 Identities=15% Similarity=0.183 Sum_probs=93.8
Q ss_pred HHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCC------ccCCCCCCCCceeeecCCCCCHHHHHH
Q 007917 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSG------KGLVPEHHPHFIGTYWGAVSSSFCGEI 299 (585)
Q Consensus 226 ~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~g------kg~~~~~hp~~~G~~~g~~~~~~~~~~ 299 (585)
++++++|++|+||+|++|.|+.+.++.+++++|+|++++||++|+.+ ||++ +||.++|.. |.++.+...+.
T Consensus 18 ~~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~--~~~~~lg~~-g~~~~~p~~e~ 94 (162)
T TIGR00315 18 KLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIE--SEEMNLHEI-TQFLADPSWEG 94 (162)
T ss_pred HHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCee--cCCCCHHHH-HHhccCchhhh
Confidence 57889999999999999999998899999999999999999999998 9998 778888875 66676778888
Q ss_pred h---hhCCEEEEeCCccCCccc--ccccccCCCcceEEEcCCceeecCCCccccccHHHHHHHHHH
Q 007917 300 V---ESADAYVFVGPIFNDYSS--VGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAK 360 (585)
Q Consensus 300 l---~~aD~vl~lG~~~~~~~~--~~~~~~~~~~~~i~id~~~~~~~~~~~~~~~~~~~~l~~L~~ 360 (585)
+ .++|+||.+|+++.-... .....+. +.+.|.++.-. +......++.+.-+..++.|.+
T Consensus 95 ~~g~g~~DlvlfvG~~~y~~~~~ls~lk~f~-~~~~i~l~~~y-~pnA~~Sf~n~~~~~~~~~l~~ 158 (162)
T TIGR00315 95 FDGEGNYDLVLFLGIIYYYLSQMLSSLKHFS-HIVTIAIDKYY-QPNADYSFPNLSKDEYLDYLRK 158 (162)
T ss_pred ccCCCCcCEEEEeCCcchHHHHHHHHHHhhc-CcEEEEecCCC-CCCCceeccccCHHHHHHHHHH
Confidence 8 899999999998732111 1112233 55666666332 1110122444444555555543
No 115
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.32 E-value=7e-12 Score=138.32 Aligned_cols=119 Identities=22% Similarity=0.305 Sum_probs=94.7
Q ss_pred cCcccccchHHHHHHHhhhc-----CCCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 436 MQYGSIGWSVGATLGYAQAA-----KDKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~-----p~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
...|++|.++|.|+|+++|. ++++|+|++|||+++ +|.+|.++++|+ ++|+||++|++.... .....
T Consensus 114 ~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~eG~~~Eal~~A~~~~~nl-i~IvdnN~~~i~~~~-~~~~~ 191 (580)
T PRK05444 114 FGAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALTGGMAFEALNNAGDLKSDL-IVILNDNEMSISPNV-GALSN 191 (580)
T ss_pred ECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccccCHHHHHHHHHHhhCCCE-EEEEECCCCcCCCcc-hhhhh
Confidence 45799999999999999985 678999999999995 999999999998 688899998862100 00000
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEe---cCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKV---RSEDELTEAMKTATGEQKDSLCFIEVFVHKDDT 563 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v---~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~ 563 (585)
.+...++.+++++||+ ++..+ .+.++|.++|+++.+ .++|++|+++|.+..-
T Consensus 192 ~~~~~~~~~~~~a~G~-----~~~~~vdG~d~~~l~~al~~a~~--~~~P~lI~~~T~kg~G 246 (580)
T PRK05444 192 YLARLRSSTLFEELGF-----NYIGPIDGHDLDALIETLKNAKD--LKGPVLLHVVTKKGKG 246 (580)
T ss_pred hhccccHHHHHHHcCC-----CeeeeeCCCCHHHHHHHHHHHHh--CCCCEEEEEEecCCcC
Confidence 1233577889999999 77753 689999999999885 6799999999987554
No 116
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=99.21 E-value=1.9e-09 Score=118.03 Aligned_cols=170 Identities=16% Similarity=0.064 Sum_probs=132.8
Q ss_pred cccccCCcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC---CCCeEEecCchhhHHHhhhhhhhhcCccEEEE
Q 007917 19 PVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGVGACVV 95 (585)
Q Consensus 19 ~~~~~~~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~---~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~ 95 (585)
+..+....++|+++++......|++.++++|+++.+++.+.|.+. .++.++++-+|.+|..||.|.+.+..| ++..
T Consensus 188 ~~~~~~~~l~GNeAvA~ga~~ag~~~~~~YPiTPsTei~e~la~~~~~~~~~~~q~E~E~aA~~~a~GAs~aG~R-a~ta 266 (562)
T TIGR03710 188 PKDGDRILISGNEAIALGAIAAGLRFYAAYPITPASDILEFLAKHLKKFGVVVVQAEDEIAAINMAIGASYAGAR-AMTA 266 (562)
T ss_pred CCCCcEEEeehHHHHHHHHHHhCCceecccCCCChhHHHHHHHHhhhhhCcEEEeeccHHHHHHHHHhHHhcCCc-eeec
Confidence 334456679999999999999999999999999999999999754 369999999999999999995555444 6777
Q ss_pred eCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHH-HHhh---hceeEEEEecCcchhHHH
Q 007917 96 TFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQEL-RCFQ---AITCSQAVVNNLGDAHEL 171 (585)
Q Consensus 96 t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~---~~~k~~~~v~~~~~~~~~ 171 (585)
|||||+.-+.-++.-|...++|++++.++++....+-. .+..| .|.. ..+. .+-.-.....+++++.++
T Consensus 267 TSg~Gl~lm~E~l~~a~~~~~P~Vi~~~~R~gpstg~~------t~~eq-~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~ 339 (562)
T TIGR03710 267 TSGPGFALMTEALGLAGMTETPLVIVDVQRGGPSTGLP------TKTEQ-SDLLFALYGGHGEFPRIVLAPGSPEECFYL 339 (562)
T ss_pred CCCCChhHhHHHHhHHHhccCCEEEEEcccCCCCCCCC------CCccH-HHHHHHhcCCCCCcCceEEcCCCHHHHHHH
Confidence 99999999999999999999999999999986533311 11111 1221 2222 122344566789999999
Q ss_pred HHHHHHHhhhcCCcEEEEecCCCCC
Q 007917 172 IDTAISTALKESKPVYISISCNLPG 196 (585)
Q Consensus 172 l~~A~~~a~~~~gPV~i~iP~dv~~ 196 (585)
..+||++|..-.-||.+..-..+.+
T Consensus 340 ~~~Af~lAe~~~~PViv~~D~~l~~ 364 (562)
T TIGR03710 340 AIEAFNLAEKYQTPVIVLSDQYLAN 364 (562)
T ss_pred HHHHHHHHHHhcCCEEEEechHHhC
Confidence 9999999998788999987666544
No 117
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=99.20 E-value=5.2e-09 Score=107.85 Aligned_cols=161 Identities=14% Similarity=0.052 Sum_probs=127.8
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC---CCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcch
Q 007917 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGG 101 (585)
Q Consensus 25 ~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~---~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~ 101 (585)
..++|+++++......|++.+.++|+++.+++.+.|.+. -+..++.+-+|.+|..||.|.+.+..| ++..|||||.
T Consensus 5 ~~~~GNeAiA~ga~~ag~~~~a~YPiTPsTeI~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~aG~R-a~taTSg~Gl 83 (352)
T PRK07119 5 VLMKGNEAIAEAAIRAGCRCYFGYPITPQSEIPEYMSRRLPEVGGVFVQAESEVAAINMVYGAAATGKR-VMTSSSSPGI 83 (352)
T ss_pred eeehHHHHHHHHHHHhCCCEEEEeCCCCchHHHHHHHHHHHHhCCEEEeeCcHHHHHHHHHHHHhhCCC-EEeecCcchH
Confidence 358999999999999999999999999999999998653 246899999999999999996655555 5666799999
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHh---h-----hceeEEEEecCcchhHHHHH
Q 007917 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCF---Q-----AITCSQAVVNNLGDAHELID 173 (585)
Q Consensus 102 ~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---~-----~~~k~~~~v~~~~~~~~~l~ 173 (585)
+-+..++.-|...++|++++-.+++....+. .+ .+|-+++ + .+-.-.....+++++.++..
T Consensus 84 ~lm~E~l~~a~~~e~P~v~v~v~R~~p~~g~-------t~----~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~ 152 (352)
T PRK07119 84 SLKQEGISYLAGAELPCVIVNIMRGGPGLGN-------IQ----PSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTM 152 (352)
T ss_pred HHHHHHHHHHHHccCCEEEEEeccCCCCCCC-------Cc----chhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHH
Confidence 9999999999999999888888876442221 11 1222222 1 22244566789999999999
Q ss_pred HHHHHhhhcCCcEEEEecCCCCCC
Q 007917 174 TAISTALKESKPVYISISCNLPGI 197 (585)
Q Consensus 174 ~A~~~a~~~~gPV~i~iP~dv~~~ 197 (585)
.||++|...+-||.+..-..+.+.
T Consensus 153 ~Af~lAE~~~~PViv~~D~~lsh~ 176 (352)
T PRK07119 153 LAFDLADKYRNPVMVLGDGVLGQM 176 (352)
T ss_pred HHHHHHHHhCCCEEEEcchhhhCc
Confidence 999999987789999887666443
No 118
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=99.09 E-value=3.3e-09 Score=110.18 Aligned_cols=165 Identities=12% Similarity=0.031 Sum_probs=130.5
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC---CCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcch
Q 007917 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGG 101 (585)
Q Consensus 25 ~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~---~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~ 101 (585)
..++|+++++...++.|++.++++|+++.+++.+.|.+. -+..++..-+|.+|..||.|.+.+..| ++..|||||.
T Consensus 5 ~~~~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~aG~R-a~TaTSg~Gl 83 (376)
T PRK08659 5 DFLQGNEACAEGAIAAGCRFFAGYPITPSTEIAEVMARELPKVGGVFIQMEDEIASMAAVIGASWAGAK-AMTATSGPGF 83 (376)
T ss_pred EEeehHHHHHHHHHHhCCCEEEEcCCCChHHHHHHHHHhhhhhCCEEEEeCchHHHHHHHHhHHhhCCC-eEeecCCCcH
Confidence 358999999999999999999999999999999999753 246899999999999999995555444 7778999999
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHH-Hhh---hceeEEEEecCcchhHHHHHHHHH
Q 007917 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELR-CFQ---AITCSQAVVNNLGDAHELIDTAIS 177 (585)
Q Consensus 102 ~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~---~~~k~~~~v~~~~~~~~~l~~A~~ 177 (585)
+-++-++.-|...++|++++..+++....+-- .+ + .| .|+.. .+. .+........+++++.++...||+
T Consensus 84 ~lm~E~~~~a~~~e~P~Viv~~~R~gp~tg~p--~~-~---~q-~D~~~~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~ 156 (376)
T PRK08659 84 SLMQENIGYAAMTETPCVIVNVQRGGPSTGQP--TK-P---AQ-GDMMQARWGTHGDHPIIALSPSSVQECFDLTIRAFN 156 (376)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeecCCCCCCCC--CC-c---Cc-HHHHHHhcccCCCcCcEEEeCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999886533321 00 1 11 23322 222 334456677899999999999999
Q ss_pred HhhhcCCcEEEEecCCCCCC
Q 007917 178 TALKESKPVYISISCNLPGI 197 (585)
Q Consensus 178 ~a~~~~gPV~i~iP~dv~~~ 197 (585)
+|...+-||.+..-..+.+.
T Consensus 157 lAE~~~~PViv~~D~~lsh~ 176 (376)
T PRK08659 157 LAEKYRTPVIVLADEVVGHM 176 (376)
T ss_pred HHHHHCCCEEEEechHhhCC
Confidence 99998889999987765544
No 119
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.08 E-value=7e-10 Score=123.06 Aligned_cols=120 Identities=19% Similarity=0.292 Sum_probs=90.2
Q ss_pred CcccccchHHHHHHHhhhcCCCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeee-----------c
Q 007917 437 QYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEI-----------H 499 (585)
Q Consensus 437 ~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~-----------~ 499 (585)
+.|+||+++++|+|++++.++++|+|++|||+|+ ++++|.++++|+++ |+||++|.+.... .
T Consensus 121 ~~gslg~a~G~A~a~~~~~~~~~v~~v~GDG~~~eG~~~Eal~~a~~~~~~li~-I~dnN~~~i~~~~~~~~~~l~~~~~ 199 (641)
T PRK12571 121 SSTSISAALGFAKARALGQPDGDVVAVIGDGSLTAGMAYEALNNAGAADRRLIV-ILNDNEMSIAPPVGALAAYLSTLRS 199 (641)
T ss_pred CcChHHHHHHHHHHHHHhCCCCeEEEEEeCchhhcchHHHHHHHHHHhCCCEEE-EEECCCeeecCCccHHHHHHHHHhc
Confidence 5778999999999999998899999999999996 89999999998754 8888888872110 0
Q ss_pred CCCCCC-----------CC-CC---------------CHHHHHHHhcCCCCCccEE-Eec--CHHHHHHHHHHhhhcCCC
Q 007917 500 DGPYNV-----------IK-NW---------------DYTGLVNAIHNGEGKCWTA-KVR--SEDELTEAMKTATGEQKD 549 (585)
Q Consensus 500 ~~~~~~-----------~~-~~---------------d~~~la~a~G~~~~~~~~~-~v~--~~~eL~~al~~a~~~~~~ 549 (585)
...|.. ++ +. -.....++||+ +++ .|+ +.++|.++|+++.. ..+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~-----~~~~~vdGhd~~~l~~al~~ak~-~~~ 273 (641)
T PRK12571 200 SDPFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGGGTLFEELGF-----TYVGPIDGHDMEALLSVLRAARA-RAD 273 (641)
T ss_pred CcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhccchhhHHHHcCC-----EEECccCCCCHHHHHHHHHHHHh-CCC
Confidence 111100 00 00 01367899999 888 575 88999999998863 247
Q ss_pred CeEEEEEEcCCCCC
Q 007917 550 SLCFIEVFVHKDDT 563 (585)
Q Consensus 550 gp~vIeV~v~~~~~ 563 (585)
+|++|.++|.+..-
T Consensus 274 ~P~~I~~~T~kGkG 287 (641)
T PRK12571 274 GPVLVHVVTEKGRG 287 (641)
T ss_pred CCEEEEEEecCccC
Confidence 89999999987544
No 120
>PLN02790 transketolase
Probab=99.07 E-value=6.7e-10 Score=123.63 Aligned_cols=115 Identities=25% Similarity=0.299 Sum_probs=92.6
Q ss_pred ccCcccccchHHHHHHHhhhcC--------------CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceee
Q 007917 435 QMQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTI 494 (585)
Q Consensus 435 ~~~~g~mG~~lpaAiGaalA~p--------------~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~ 494 (585)
....|.+|.+++.|+|.++|.. +..|+|++|||+++ .+..|..++||-+|+|+||++|++
T Consensus 101 ~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~~i 180 (654)
T PLN02790 101 EVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISI 180 (654)
T ss_pred cccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCccc
Confidence 3457889999999999999855 46799999999998 667788999999999999999998
Q ss_pred eeeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEe----cCHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007917 495 EVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKV----RSEDELTEAMKTATGEQKDSLCFIEVFVHK 560 (585)
Q Consensus 495 ~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v----~~~~eL~~al~~a~~~~~~gp~vIeV~v~~ 560 (585)
+++-.....-|+.+..++||+ +++.| .+.++|.++++++.+ ..++|++|+++|.+
T Consensus 181 -----~~~~~~~~~~~~~~~f~a~G~-----~~~~vdgg~hd~~~l~~a~~~a~~-~~~~P~lI~~~T~k 239 (654)
T PLN02790 181 -----DGDTEIAFTEDVDKRYEALGW-----HTIWVKNGNTDYDEIRAAIKEAKA-VTDKPTLIKVTTTI 239 (654)
T ss_pred -----cCCcccccchhHHHHHHHcCC-----eEEEECCCCCCHHHHHHHHHHHHh-cCCCeEEEEEEEee
Confidence 221111123478899999999 89998 468899999988863 25799999999963
No 121
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=99.07 E-value=2.9e-09 Score=106.10 Aligned_cols=162 Identities=20% Similarity=0.132 Sum_probs=116.3
Q ss_pred CCCCHHHHHHHHHhhCCCCCE---------EEecCCccccccccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCc
Q 007917 389 EPLRVNVLFKHIQDMLSGDTA---------VIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKR 459 (585)
Q Consensus 389 ~~~~~~~~~~~L~~~l~~~~i---------i~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~ 459 (585)
+.+...-+++.|.+.+.+... |++..|++..+..+.. .+...+..|-+++.|.|.++|+++..
T Consensus 19 pGCG~~~~l~~i~~a~~~~~~l~~~~~c~~vvsgig~s~~~~~y~~--------~~~~hs~~gra~a~atGik~A~~~l~ 90 (294)
T COG1013 19 PGCGEFIILKLLTQALGDRAELGNATGCSVVVSGIGCSTRWPVYVN--------PPWVHSLHGRAAAVATGIKLANPALS 90 (294)
T ss_pred CCCCchHHHHHHHHhccchhhhccCCCCeEEEeCCccCcccccccc--------CCceeeccCcchhhHHHHHHhccCCe
Confidence 456666777777777554444 4444444444433222 22334667889999999999999999
Q ss_pred EEEEEcCchhH-----hHHHHHHhCCCeEEEEEeCCceeeeeeec-----CC------C-CCCC-CCCCHHHHHHHhcCC
Q 007917 460 VIACIGDGSFQ-----EISTMIRCGQRSIIFLINNGGYTIEVEIH-----DG------P-YNVI-KNWDYTGLVNAIHNG 521 (585)
Q Consensus 460 vv~v~GDGsf~-----eL~ta~~~~lpv~ivV~NN~~~~~~~~~~-----~~------~-~~~~-~~~d~~~la~a~G~~ 521 (585)
||++.|||... .|.-+.+.|.+|++||+||..|+....+. .+ + .... ...|...||-++|+.
T Consensus 91 Viv~gGDG~~~dIG~~~l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~ 170 (294)
T COG1013 91 VIVIGGDGDAYDIGGNHLIHALRRNHDITYIVVDNEVYGNTGGQASPTTPKGAKTKTTPYGKRSEKKKDPGLLAMAAGAT 170 (294)
T ss_pred EEEEecchhHhhhhhHHHHHHHHcCCCeEEEEECCeecccCCCccCCCCCCCceeeecCCCCCcCCCCCHHHHHHHCCCC
Confidence 99999999776 88888999999999999999999821111 01 1 1222 556999999999982
Q ss_pred CCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCC
Q 007917 522 EGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 562 (585)
Q Consensus 522 ~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~ 562 (585)
.+-...+-++.++...+++|++ .+||++|+|....-.
T Consensus 171 --yVAr~~~~~~~~l~~~i~kA~~--~~Gps~I~v~sPC~t 207 (294)
T COG1013 171 --YVARASVGDPKDLTEKIKKAAE--HKGPSFIDVLSPCPT 207 (294)
T ss_pred --eEEEecccCHHHHHHHHHHHHh--ccCCeEEEEecCCCC
Confidence 1122234579999999999997 789999999987654
No 122
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=99.06 E-value=3.6e-09 Score=109.57 Aligned_cols=165 Identities=12% Similarity=0.018 Sum_probs=130.0
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC---CCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcch
Q 007917 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGG 101 (585)
Q Consensus 25 ~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~---~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~ 101 (585)
..++|+++++......|++.+.++|+++.+++.+.|.+. -+..++.+-+|.+|..||.|-+.+..| ++..|||||.
T Consensus 4 ~~~~GNeAiA~ga~~ag~~~~a~YPITPsTeI~e~la~~~~~~g~~~vq~E~E~aA~~~a~GAs~aG~R-a~taTSg~G~ 82 (375)
T PRK09627 4 IISTGNELVAKAAIECGCRFFGGYPITPSSEIAHEMSVLLPKCGGTFIQMEDEISGISVALGASMSGVK-SMTASSGPGI 82 (375)
T ss_pred eEechHHHHHHHHHHhCCCEEEEeCCCChhHHHHHHHHHHHHcCCEEEEcCCHHHHHHHHHHHHhhCCC-EEeecCCchH
Confidence 358999999999999999999999999999999988653 367899999999999999996655545 7778999999
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHH-HHhh---hceeEEEEecCcchhHHHHHHHHH
Q 007917 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQEL-RCFQ---AITCSQAVVNNLGDAHELIDTAIS 177 (585)
Q Consensus 102 ~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~---~~~k~~~~v~~~~~~~~~l~~A~~ 177 (585)
+-+.-.+.-|...++|++++..+++....|-- + .. .| .|.. ...+ .+.+......+++++.++..+||+
T Consensus 83 ~lm~E~~~~a~~~e~P~V~~~~~R~GpstG~p-~----~~-~q-~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~t~~Af~ 155 (375)
T PRK09627 83 SLKAEQIGLGFIAEIPLVIVNVMRGGPSTGLP-T----RV-AQ-GDVNQAKNPTHGDFKSIALAPGSLEEAYTETVRAFN 155 (375)
T ss_pred HHHhhHHHHHHhccCCEEEEEeccCCCcCCCC-C----cc-ch-HHHHHHhcCCCCCcCcEEEeCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999765433310 0 00 00 1211 1111 334446677889999999999999
Q ss_pred HhhhcCCcEEEEecCCCCCC
Q 007917 178 TALKESKPVYISISCNLPGI 197 (585)
Q Consensus 178 ~a~~~~gPV~i~iP~dv~~~ 197 (585)
+|..-+-||.+..-..+.+.
T Consensus 156 lAE~~~~PViv~~D~~lsh~ 175 (375)
T PRK09627 156 LAERFMTPVFLLLDETVGHM 175 (375)
T ss_pred HHHHHcCceEEecchHHhCC
Confidence 99987899999988766553
No 123
>PRK12754 transketolase; Reviewed
Probab=98.99 E-value=2.2e-09 Score=118.69 Aligned_cols=114 Identities=20% Similarity=0.218 Sum_probs=92.3
Q ss_pred cCcccccchHHHHHHHhhhcC--------------CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeee
Q 007917 436 MQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIE 495 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~p--------------~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
...|++|.+++.|+|.++|.. +.+|+|++|||+++ .+..|..++||.+|+|++|+++++
T Consensus 111 ~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~~i- 189 (663)
T PRK12754 111 TTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISI- 189 (663)
T ss_pred ccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCCcc-
Confidence 456889999999999998732 56799999999999 566678999999999999999998
Q ss_pred eeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEE-ec--CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007917 496 VEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAK-VR--SEDELTEAMKTATGEQKDSLCFIEVFVHK 560 (585)
Q Consensus 496 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~-v~--~~~eL~~al~~a~~~~~~gp~vIeV~v~~ 560 (585)
+++.......|+.+..++||+ ++++ |+ +.++|.+|++++.. ..++|++|+++|.+
T Consensus 190 ----dg~~~~~~~~~~~~r~~a~Gw-----~vi~vvDG~D~~ai~~A~~~a~~-~~~~Pt~I~~~T~~ 247 (663)
T PRK12754 190 ----DGHVEGWFTDDTAMRFEAYGW-----HVIRGIDGHDADSIKRAVEEARA-VTDKPSLLMCKTII 247 (663)
T ss_pred ----CcchhhccCccHHHHHHhcCC-----eEEeeECCCCHHHHHHHHHHHHh-cCCCCEEEEEEeee
Confidence 332222224689999999999 8888 65 78899999988863 35789999999874
No 124
>PTZ00089 transketolase; Provisional
Probab=98.99 E-value=2.1e-09 Score=119.81 Aligned_cols=114 Identities=26% Similarity=0.287 Sum_probs=91.9
Q ss_pred cCcccccchHHHHHHHhhhcC--------------CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeee
Q 007917 436 MQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIE 495 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~p--------------~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
...|.+|.+++.|+|.++|.. +.+|+|++|||+++ .+..|..++||-+|+|+||+++.+
T Consensus 113 ~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i- 191 (661)
T PTZ00089 113 VTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKITI- 191 (661)
T ss_pred cCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCccc-
Confidence 457889999999999998753 45799999999998 666778899999999999999998
Q ss_pred eeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEec----CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007917 496 VEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR----SEDELTEAMKTATGEQKDSLCFIEVFVHK 560 (585)
Q Consensus 496 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~----~~~eL~~al~~a~~~~~~gp~vIeV~v~~ 560 (585)
+++-.....-++.+..++||+ +++.|. +.++|.++++++.. ..++|++|+++|.+
T Consensus 192 ----~~~~~~~~~~~~~~~f~a~G~-----~~i~v~dG~~D~~~l~~a~~~a~~-~~~~P~~I~~~T~k 250 (661)
T PTZ00089 192 ----DGNTDLSFTEDVEKKYEAYGW-----HVIEVDNGNTDFDGLRKAIEEAKK-SKGKPKLIIVKTTI 250 (661)
T ss_pred ----ccCcccccCccHHHHHHhcCC-----cEEEeCCCCCCHHHHHHHHHHHHh-cCCCcEEEEEEeee
Confidence 221111124588999999999 899983 78899999998874 23789999999853
No 125
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=98.99 E-value=7.4e-10 Score=112.43 Aligned_cols=114 Identities=25% Similarity=0.334 Sum_probs=86.3
Q ss_pred cCcccccchHHHHHHHhhhcC--------------CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeee
Q 007917 436 MQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIE 495 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~p--------------~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
...|++|.|++.|+|.|+|.. +.+|+|++|||.++ .+..|.+++|+=+|+|+|++...+
T Consensus 108 ~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~q~- 186 (332)
T PF00456_consen 108 ASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNGIQI- 186 (332)
T ss_dssp S--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEESEET-
T ss_pred eeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCCccc-
Confidence 357999999999999999842 45799999999999 666778999998888888887776
Q ss_pred eeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEe---cCHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007917 496 VEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKV---RSEDELTEAMKTATGEQKDSLCFIEVFVHK 560 (585)
Q Consensus 496 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v---~~~~eL~~al~~a~~~~~~gp~vIeV~v~~ 560 (585)
++.-......|+.+--++||+ +.++| .+.++|.+||+++.. ..++|++|.++|-.
T Consensus 187 ----dg~~~~~~~~~~~~k~~a~Gw-----~v~~v~dGhd~~~i~~A~~~a~~-~~~kP~~Ii~~Tvk 244 (332)
T PF00456_consen 187 ----DGPTDIVFSEDIAKKFEAFGW-----NVIEVCDGHDVEAIYAAIEEAKA-SKGKPTVIIARTVK 244 (332)
T ss_dssp ----TEEGGGTHHSHHHHHHHHTT------EEEEEEETTBHHHHHHHHHHHHH-STSS-EEEEEEE-T
T ss_pred ----CCCcccccchHHHHHHHHhhh-----hhcccccCcHHHHHHHHHHHHHh-cCCCCceeecceEE
Confidence 332212223578999999999 99998 589999999999975 34899999999874
No 126
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=98.99 E-value=2.5e-09 Score=119.12 Aligned_cols=114 Identities=24% Similarity=0.248 Sum_probs=91.4
Q ss_pred cCcccccchHHHHHHHhhhcC--------------CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeee
Q 007917 436 MQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIE 495 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~p--------------~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
...|++|.+++.|+|+++|.. +.+|+|++|||+++ .+..|..++||-+|+|+||++|++
T Consensus 107 ~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~i- 185 (653)
T TIGR00232 107 ATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNRISI- 185 (653)
T ss_pred eCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCCeee-
Confidence 456889999999999998742 45799999999998 566678999999999999999998
Q ss_pred eeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEe-c--CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007917 496 VEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKV-R--SEDELTEAMKTATGEQKDSLCFIEVFVHK 560 (585)
Q Consensus 496 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v-~--~~~eL~~al~~a~~~~~~gp~vIeV~v~~ 560 (585)
+++-......++.+..++||+ ++++| + +.+++.+|++++.. ..++|++|+++|.+
T Consensus 186 ----~~~~~~~~~~~~~~~~~a~Gw-----~~~~v~DG~D~~ai~~A~~~a~~-~~~~P~~I~~~T~~ 243 (653)
T TIGR00232 186 ----DGAVDGSFTEDVAKRFEAYGW-----EVLEVEDGHDLAAIDAAIEEAKA-SKDKPTLIEVTTTI 243 (653)
T ss_pred ----ccccccccCccHHHHHHhcCC-----cEEEeCCCCCHHHHHHHHHHHHh-CCCCCEEEEEEeee
Confidence 222111124589999999999 89998 4 68889999988874 22589999999853
No 127
>PRK12753 transketolase; Reviewed
Probab=98.97 E-value=2.4e-09 Score=119.16 Aligned_cols=114 Identities=22% Similarity=0.241 Sum_probs=92.1
Q ss_pred cCcccccchHHHHHHHhhhcC--------------CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeee
Q 007917 436 MQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIE 495 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~p--------------~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
...|++|.+++.|+|.++|.. +.+|+|++|||+++ .+..|..++||-+|+|+||+++.+
T Consensus 111 ~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~i- 189 (663)
T PRK12753 111 TTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGISI- 189 (663)
T ss_pred cCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCCcC-
Confidence 357899999999999998742 46899999999998 566678999999999999999998
Q ss_pred eeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEE-ec--CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007917 496 VEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAK-VR--SEDELTEAMKTATGEQKDSLCFIEVFVHK 560 (585)
Q Consensus 496 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~-v~--~~~eL~~al~~a~~~~~~gp~vIeV~v~~ 560 (585)
+++......-|+.+..++||+ +++. |+ |.++|.++++++.. ..++|++|+++|.+
T Consensus 190 ----~~~~~~~~~~~~~~~f~a~Gw-----~~~~~vDGhD~~~i~~a~~~a~~-~~~~P~~I~~~T~k 247 (663)
T PRK12753 190 ----DGETEGWFTDDTAKRFEAYHW-----HVIHEIDGHDPQAIKEAILEAQS-VKDKPSLIICRTII 247 (663)
T ss_pred ----CCChhhhcChhHHHHHHHcCC-----eEEceeCCCCHHHHHHHHHHHHH-CCCCeEEEEEEEee
Confidence 332212224588999999999 8884 75 78999999998874 34789999999874
No 128
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=98.95 E-value=4.3e-09 Score=115.78 Aligned_cols=118 Identities=23% Similarity=0.276 Sum_probs=87.0
Q ss_pred CcccccchHHHHHHHhhhc----CCCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCC---
Q 007917 437 QYGSIGWSVGATLGYAQAA----KDKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPY--- 503 (585)
Q Consensus 437 ~~g~mG~~lpaAiGaalA~----p~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~--- 503 (585)
+.|..|.++|.|+|.++|. .++.|+|++|||+++ .|..|..+++|+++|| ||++|++.... ++..
T Consensus 111 ~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~Ii-~dN~~si~~~~-~~~~~~l 188 (581)
T PRK12315 111 TVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIV-NDNQMSIAENH-GGLYKNL 188 (581)
T ss_pred CCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcchHHHHHHHHHhhCCCEEEEE-ECCCCcCCCCC-chhhhhh
Confidence 4566777899999988874 346899999999998 6777888898865555 55557762110 1100
Q ss_pred ---CCCCCCCHHHHHHHhcCCCCCccEEEe-c--CHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCC
Q 007917 504 ---NVIKNWDYTGLVNAIHNGEGKCWTAKV-R--SEDELTEAMKTATGEQKDSLCFIEVFVHKDDT 563 (585)
Q Consensus 504 ---~~~~~~d~~~la~a~G~~~~~~~~~~v-~--~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~ 563 (585)
......+...++++||+ +++.| + +.+++.++++++.+ .++|+||+++|-+..-
T Consensus 189 ~~~~~~~~~~~~~~~~a~G~-----~~~~v~DG~D~~~l~~a~~~a~~--~~gP~~i~~~T~kG~G 247 (581)
T PRK12315 189 KELRDTNGQSENNLFKAMGL-----DYRYVEDGNDIESLIEAFKEVKD--IDHPIVLHIHTLKGKG 247 (581)
T ss_pred hhhhhcccccHHHHHHhcCC-----eEEEeeCCCCHHHHHHHHHHHHh--CCCCEEEEEEeecCCC
Confidence 11134567889999999 89888 5 78899999999875 6899999999987644
No 129
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=98.94 E-value=8.3e-09 Score=87.50 Aligned_cols=162 Identities=17% Similarity=0.180 Sum_probs=127.2
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHH
Q 007917 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (585)
Q Consensus 25 ~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (585)
..++.++++.+.|++.||++++.+|.+....++.-+.+++.|..|-...|..+...+.|.+.+.++ +.++-.||- .|
T Consensus 2 ~kvn~seav~e~mkdagIdfa~slPC~~lk~ll~lveedp~i~~i~vtREEeg~GIcAGa~lAGkk~ailmQnsGl--GN 79 (172)
T COG4032 2 YKVNPSEAVYEAMKDAGIDFACSLPCDNLKNLLPLVEEDPEIPEIPVTREEEGVGICAGAYLAGKKPAILMQNSGL--GN 79 (172)
T ss_pred cccCHHHHHHHHHHHcCCcEEEeccHHHHHhHHHHHhcCCCcccccccchhcceeeehhhhhcCCCcEEEEeccCc--ch
Confidence 357899999999999999999999999999999999888899999888888888888887777778 777777764 59
Q ss_pred HHHHHHHhhh-cCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc
Q 007917 104 VLNAIAGAYS-ENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (585)
Q Consensus 104 ~~~gl~~A~~-~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~ 182 (585)
.+++++.-+. -++|++.|.+.+.....+-..+. ..| . -.-++++..---.+.+.+|++..++|..|+..|...
T Consensus 80 siNal~SL~~ty~iPl~ml~ShRG~~~E~i~AQV--pmG--r--~~~kiLe~~~lpt~t~~~p~Ea~~li~~~~~~a~~~ 153 (172)
T COG4032 80 SINALASLYVTYKIPLLMLASHRGVLKEGIEAQV--PMG--R--ALPKILEGLELPTYTIIGPEEALPLIENAILDAFEN 153 (172)
T ss_pred HHHHHHHHHHHhccchhhhhhccchhhcCCcccc--ccc--h--hhHHHHhhcCCcccccCCHHHHHHHHHHHHHHHHHc
Confidence 9999998775 78999999998766533321100 111 0 112445544445677889999999999999999998
Q ss_pred CCcEEEEecCCC
Q 007917 183 SKPVYISISCNL 194 (585)
Q Consensus 183 ~gPV~i~iP~dv 194 (585)
..||-+-+.-.+
T Consensus 154 s~pv~vlls~~~ 165 (172)
T COG4032 154 SRPVAVLLSPKY 165 (172)
T ss_pred CCceEEEechHH
Confidence 889888766554
No 130
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.90 E-value=3.1e-08 Score=103.03 Aligned_cols=156 Identities=14% Similarity=0.039 Sum_probs=122.6
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-----CCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCc
Q 007917 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-----PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTV 99 (585)
Q Consensus 25 ~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~-----~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~Gp 99 (585)
..++|+++++...+..|++.++++|+++.+++.+.|.+. -++.|+.+-+|.+|..||.|.+.+..| ++..||||
T Consensus 4 ~~l~GNeAiA~ga~~ag~~~~a~YPITPsTei~e~la~~~~~G~~~~~~~~~E~E~aA~~~aiGAs~aGaR-a~TaTSg~ 82 (390)
T PRK08366 4 KVVSGNYAAAYAALHARVQVVAAYPITPQTSIIEKIAEFIANGEADIQYVPVESEHSAMAACIGASAAGAR-AFTATSAQ 82 (390)
T ss_pred EEeeHHHHHHHHHHHhCCCEEEEECCCChhHHHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHhhCCC-eEeeeCcc
Confidence 458999999999999999999999999999999998653 247888888999999999996665555 66778999
Q ss_pred chHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhh-hcee-EEEEecCcchhHHHHHHHHH
Q 007917 100 GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQ-AITC-SQAVVNNLGDAHELIDTAIS 177 (585)
Q Consensus 100 G~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~k-~~~~v~~~~~~~~~l~~A~~ 177 (585)
|+.-+.-+|.-|...++|+|+.-.+++... +- +.. .+|.+++. --+. +.....+++++.++..+||+
T Consensus 83 Gl~lm~E~l~~aa~~~lPiVi~~~~R~~p~-~~------~~~----~~q~D~~~~~d~g~i~~~~~~~QEa~d~t~~Af~ 151 (390)
T PRK08366 83 GLALMHEMLHWAAGARLPIVMVDVNRAMAP-PW------SVW----DDQTDSLAQRDTGWMQFYAENNQEVYDGVLMAFK 151 (390)
T ss_pred cHHHHhhHHHHHHhcCCCEEEEEeccCCCC-CC------CCc----chhhHHHHHhhcCEEEEeCCCHHHHHHHHHHHHH
Confidence 999999999999999999998888876552 11 111 12322211 1122 23344789999999999999
Q ss_pred HhhhcCCcEEEEecC
Q 007917 178 TALKESKPVYISISC 192 (585)
Q Consensus 178 ~a~~~~gPV~i~iP~ 192 (585)
+|..-.-||.+..-.
T Consensus 152 lAE~~~~PViv~~Dg 166 (390)
T PRK08366 152 VAETVNLPAMVVESA 166 (390)
T ss_pred HHHHHCCCEEEEecC
Confidence 999878999999743
No 131
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=98.88 E-value=4.2e-08 Score=103.21 Aligned_cols=161 Identities=15% Similarity=0.045 Sum_probs=125.6
Q ss_pred CCcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-C----CCeEEecCchhhHHHhhhhhhhhcCccEEEEeCC
Q 007917 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-P----ELNLVGCCNELNAGYAADGYARSRGVGACVVTFT 98 (585)
Q Consensus 24 ~~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~-~----~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~G 98 (585)
...++|+++++....+.|++.++++|+++.+++.+.+.+. + +..++..-+|.+|..||.|-+ .+|.-++..|+|
T Consensus 10 ~~~~~GNeAiA~ga~~Ag~~~~a~YPITPsTeI~e~la~~~~~g~~~~~~vq~E~E~~A~~~~~GAs-~aGaRa~TaTS~ 88 (407)
T PRK09622 10 IEVWDGNTAASNALRQAQIDVVAAYPITPSTPIVQNYGSFKANGYVDGEFVMVESEHAAMSACVGAA-AAGGRVATATSS 88 (407)
T ss_pred eeecchHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhCCCcCcEEEeeccHHHHHHHHHHHH-hhCcCEEeecCc
Confidence 4568999999999999999999999999999999998653 1 357899999999999999955 455447778999
Q ss_pred cchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHH
Q 007917 99 VGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAIST 178 (585)
Q Consensus 99 pG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~ 178 (585)
||+.-+.-++.-|...++|++++..++..... - ... .+..|.... +.-........+++++.++..+||++
T Consensus 89 ~Gl~lm~E~l~~aa~~~~P~V~~~~~R~~~~~-~------~i~-~d~~D~~~~-r~~g~ivl~p~s~QEa~d~~~~Af~l 159 (407)
T PRK09622 89 QGLALMVEVLYQASGMRLPIVLNLVNRALAAP-L------NVN-GDHSDMYLS-RDSGWISLCTCNPQEAYDFTLMAFKI 159 (407)
T ss_pred chHHHHhhHHHHHHHhhCCEEEEEeccccCCC-c------CCC-chHHHHHHH-hcCCeEEEeCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998888888765321 0 111 111222221 22223445667899999999999999
Q ss_pred hhhc--CCcEEEEecCCC
Q 007917 179 ALKE--SKPVYISISCNL 194 (585)
Q Consensus 179 a~~~--~gPV~i~iP~dv 194 (585)
|... +-||.+..-.-+
T Consensus 160 AE~~~~~~Pviv~~Dg~~ 177 (407)
T PRK09622 160 AEDQKVRLPVIVNQDGFL 177 (407)
T ss_pred HHHhccCCCEEEEechhh
Confidence 9986 789999977664
No 132
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=98.86 E-value=4.6e-08 Score=102.01 Aligned_cols=159 Identities=15% Similarity=0.049 Sum_probs=121.9
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-----CCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCc
Q 007917 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-----PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTV 99 (585)
Q Consensus 25 ~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~-----~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~Gp 99 (585)
..++|++++++..++.|++.++++|+++.+++.+.|.+. -+.+|+.+-+|.+|..||.|-+.+..| ++..||||
T Consensus 5 ~~~~GNeAvA~aa~~Ag~~v~a~YPITPsTei~e~la~~~~~g~~~~~~v~~EsE~aA~~~~~GAs~aGaR-a~TaTS~~ 83 (394)
T PRK08367 5 TVMKANEAAAWAAKLAKPKVIAAFPITPSTLVPEKISEFVANGELDAEFIKVESEHSAISACVGASAAGVR-TFTATASQ 83 (394)
T ss_pred EeccHHHHHHHHHHHhCCCEEEEECCCCccHHHHHHHHHhhcCCcCeEEEEeCCHHHHHHHHHHHHhhCCC-eEeeeccc
Confidence 458999999999999999999999999999999998653 257888888999999999996555444 67779999
Q ss_pred chHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHh
Q 007917 100 GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTA 179 (585)
Q Consensus 100 G~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a 179 (585)
|++-+.-.+.-|...++|+++..+.+.... ..+ +| +.+ .|. ...+..-.......+++++.++...||++|
T Consensus 84 Gl~lm~E~l~~aag~~lP~V~vv~~R~~~~-p~~--i~---~d~--~D~-~~~rd~g~~~~~a~~~QEa~D~~~~Af~lA 154 (394)
T PRK08367 84 GLALMHEVLFIAAGMRLPIVMAIGNRALSA-PIN--IW---NDW--QDT-ISQRDTGWMQFYAENNQEALDLILIAFKVA 154 (394)
T ss_pred hHHHHhhHHHHHHHccCCEEEEECCCCCCC-CCC--cC---cch--HHH-HhccccCeEEEeCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999888887765542 101 11 001 121 111222222334478999999999999999
Q ss_pred hhcC--CcEEEEecCC
Q 007917 180 LKES--KPVYISISCN 193 (585)
Q Consensus 180 ~~~~--gPV~i~iP~d 193 (585)
...+ -||.+..-.-
T Consensus 155 E~~~~~~Pviv~~Dgf 170 (394)
T PRK08367 155 EDERVLLPAMVGFDAF 170 (394)
T ss_pred HHhCcCCCEEEEechh
Confidence 9754 7999987663
No 133
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=98.86 E-value=1.3e-08 Score=102.58 Aligned_cols=115 Identities=22% Similarity=0.184 Sum_probs=82.8
Q ss_pred cCcccccchHHHHHHHhhhcC-----CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 436 MQYGSIGWSVGATLGYAQAAK-----DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~p-----~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
+..+.+|..+|-|.|+++|.. ++-++|++|||+.. .|+.|.-+++|++ +|++|++|+|.. +...
T Consensus 133 ~~~~iVg~Q~~~AaG~A~a~k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvv-f~ieNN~yAiSv---p~~~- 207 (358)
T COG1071 133 GGSGIVGTQIPLAAGAALALKYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVV-FVIENNQYAISV---PRSR- 207 (358)
T ss_pred CCCceecccccHHHHHHHHHHHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEE-EEEecCCceeec---chhh-
Confidence 456788899999999998842 33689999999987 6677778999955 455666788831 0000
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEec--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~eL~~al~~a~~--~~~~gp~vIeV~v~~ 560 (585)
.-....+..=|.+||+ .+++|+ |+-.+.++.++|.+ ...+||+|||..+-|
T Consensus 208 q~~~~~~~~ra~aygi-----pgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR 262 (358)
T COG1071 208 QTAAEIIAARAAAYGI-----PGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYR 262 (358)
T ss_pred cccchhHHhhhhccCC-----CeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEee
Confidence 0012245668899999 999997 66666667777665 347799999999865
No 134
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=98.85 E-value=4e-09 Score=106.42 Aligned_cols=113 Identities=21% Similarity=0.213 Sum_probs=80.8
Q ss_pred cccccchHHHHHHHhhhc----CCCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCC
Q 007917 438 YGSIGWSVGATLGYAQAA----KDKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIK 507 (585)
Q Consensus 438 ~g~mG~~lpaAiGaalA~----p~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~ 507 (585)
.+.+|..+|.|.|.++|. .+.-++|++|||+.. .|..|..+++|+++||-||+ |++...... ...
T Consensus 100 ~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~-~aist~~~~----~~~ 174 (300)
T PF00676_consen 100 SSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQ-YAISTPTEE----QTA 174 (300)
T ss_dssp ESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEES-EETTEEHHH----HCS
T ss_pred cccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCC-cccccCccc----ccc
Confidence 456777788888888874 345689999999976 67778889999966666555 666111100 013
Q ss_pred CCCHHHHHHHhcCCCCCccEEEec--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007917 508 NWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHK 560 (585)
Q Consensus 508 ~~d~~~la~a~G~~~~~~~~~~v~--~~~eL~~al~~a~~--~~~~gp~vIeV~v~~ 560 (585)
..++.+.|++||+ ++++|+ |+.++-.++++|++ .+.+||+|||+.+-|
T Consensus 175 ~~~~~~~a~~~gi-----p~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR 226 (300)
T PF00676_consen 175 SPDIADRAKGYGI-----PGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYR 226 (300)
T ss_dssp SSTSGGGGGGTTS-----EEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--
T ss_pred ccchhhhhhccCC-----cEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeecc
Confidence 4467889999999 999996 78888888888876 457899999999954
No 135
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=98.84 E-value=1.9e-08 Score=102.49 Aligned_cols=114 Identities=23% Similarity=0.224 Sum_probs=90.2
Q ss_pred CcccccchHHHHHHHhhhcC-----------CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeeec
Q 007917 437 QYGSIGWSVGATLGYAQAAK-----------DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEIH 499 (585)
Q Consensus 437 ~~g~mG~~lpaAiGaalA~p-----------~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~~ 499 (585)
..|++|.|++.|+|.++|.. +.+|+||+|||.++ .+..|.+++|+=+|+|+|++...+
T Consensus 116 sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qi----- 190 (386)
T cd02017 116 PTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRL----- 190 (386)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCcc-----
Confidence 46889999999999888642 56899999999999 566678899988888888888776
Q ss_pred CCCCCC--CCCCCHHHHHHHhcCCCCCccEEEec----------------------------------------------
Q 007917 500 DGPYNV--IKNWDYTGLVNAIHNGEGKCWTAKVR---------------------------------------------- 531 (585)
Q Consensus 500 ~~~~~~--~~~~d~~~la~a~G~~~~~~~~~~v~---------------------------------------------- 531 (585)
++.-.. ...-|+.+..++||+ +.+.|+
T Consensus 191 dG~t~~v~~~~e~l~~kf~AfGW-----~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~ 265 (386)
T cd02017 191 DGPVRGNGKIIQELEGIFRGAGW-----NVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFG 265 (386)
T ss_pred CCcccccccCchhHHHHHHhcCC-----EEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhcc
Confidence 333222 134589999999999 888884
Q ss_pred -------------------------CHHHHHHHHHHhhhcCCCCeEEEEEEcCCC
Q 007917 532 -------------------------SEDELTEAMKTATGEQKDSLCFIEVFVHKD 561 (585)
Q Consensus 532 -------------------------~~~eL~~al~~a~~~~~~gp~vIeV~v~~~ 561 (585)
+.++|.+|++++.+ ..++|++|-++|-..
T Consensus 266 ~~~~~~~~~~~~~d~~~~~~~~gGhD~~~i~~A~~~a~~-~~~kPt~Iia~TikG 319 (386)
T cd02017 266 KYPELKALVTDLSDEDLWALNRGGHDPRKVYAAYKKAVE-HKGKPTVILAKTIKG 319 (386)
T ss_pred ccHHHHHHhhcccHHhhhhhccCCCCHHHHHHHHHHHHh-CCCCCeEEEEeCeec
Confidence 78889999988763 246899999998753
No 136
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=98.80 E-value=3.1e-08 Score=95.67 Aligned_cols=152 Identities=17% Similarity=0.062 Sum_probs=107.6
Q ss_pred HHHHHcCCCEEEecCCCChHHHHHhhhcC---CCC--eEEecCchhhHHHhhhhhhhhcCccEEEEeCCcchHHHHHHHH
Q 007917 35 RRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PEL--NLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIA 109 (585)
Q Consensus 35 ~~L~~~Gv~~vFg~PG~~~~~l~~al~~~---~~i--~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~gl~ 109 (585)
+..++.|++.++++|+++.+++++.+.+. .++ +++++-+|.+|..|+.|.+.+..| ++..|+|||+.-+.-+|.
T Consensus 1 ~ga~~ag~~~~~~YPiTPstei~e~~~~~~~~~~~~~~~~~~E~E~~A~~~~~GAs~aG~r-a~t~ts~~Gl~lm~e~l~ 79 (230)
T PF01855_consen 1 EGAIEAGCDFAAAYPITPSTEIMEYLAKYIADGGGDAKVVQAESEHAAMEAAIGASAAGAR-AMTATSGPGLNLMAEPLY 79 (230)
T ss_dssp HHHHHHT-SEEEE--BTTTCHHHHHHHHHHHCCTBB-EEEE-SSHHHHHHHHHHHHHTT---EEEEEECCHHHHHCCCHH
T ss_pred CHHHhcCCceEEEeCCCCccHHHHHHHHHHHHcCCceEEEEecchHHHHHHHHHHHhcCCc-eEEeecCCcccccHhHHH
Confidence 35678999999999999999999987542 344 999999999999999996654444 446889999999999999
Q ss_pred HhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCCcEEEE
Q 007917 110 GAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYIS 189 (585)
Q Consensus 110 ~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~ 189 (585)
.+...++|++++..+++....|-. .+..| .| .-..+..-.-.....+++++.++...||++|..-+-||.+.
T Consensus 80 ~a~~~~~P~V~~~~~R~g~~~g~~------~~~~q-~D-~~~~~d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~ 151 (230)
T PF01855_consen 80 WAAGTELPIVIVVVQRAGPSPGLS------TQPEQ-DD-LMAARDSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVL 151 (230)
T ss_dssp HHHHTT--EEEEEEEB---SSSB--------SB-S-HH-HHHTTTSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHcCCCEEEEEEECCCCCCCCc------CcCCh-hH-HHHHHhcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999998776544221 11111 12 23333444445666899999999999999999989999999
Q ss_pred ecCCCC
Q 007917 190 ISCNLP 195 (585)
Q Consensus 190 iP~dv~ 195 (585)
.-.-+.
T Consensus 152 ~Dg~~~ 157 (230)
T PF01855_consen 152 FDGFLC 157 (230)
T ss_dssp EECCCC
T ss_pred echhhh
Confidence 877775
No 137
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=98.79 E-value=4.6e-08 Score=90.46 Aligned_cols=112 Identities=21% Similarity=0.272 Sum_probs=84.5
Q ss_pred CcccccchHHHHHHHhhh----cCCCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCC
Q 007917 437 QYGSIGWSVGATLGYAQA----AKDKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVI 506 (585)
Q Consensus 437 ~~g~mG~~lpaAiGaalA----~p~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~ 506 (585)
..|++|.||+.|+|.+++ ..+.+|++++|||-.. .+.+|++|+|+=+|.+++-+.... ++...++
T Consensus 117 stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG~~WEAam~Aah~~L~NLiaivD~N~~Ql-----dG~t~~i 191 (243)
T COG3959 117 STGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIVDRNKLQL-----DGETEEI 191 (243)
T ss_pred cCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccccHHHHHHHHHHhccCcEEEEEecCCccc-----CCchhhc
Confidence 346666666665555554 4567899999999998 566788999987777777665544 4544443
Q ss_pred -CCCCHHHHHHHhcCCCCCccEEEec--CHHHHHHHHHHhhhcCCCCeEEEEEEcC
Q 007917 507 -KNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATGEQKDSLCFIEVFVH 559 (585)
Q Consensus 507 -~~~d~~~la~a~G~~~~~~~~~~v~--~~~eL~~al~~a~~~~~~gp~vIeV~v~ 559 (585)
+.-|+.+--+|||+ +..+|+ +.++|.++|+++.. ..++|.+|-..+-
T Consensus 192 ~~~~pL~~k~eAFGw-----~V~evdG~d~~~i~~a~~~~~~-~~~rP~~IIa~Tv 241 (243)
T COG3959 192 MPKEPLADKWEAFGW-----EVIEVDGHDIEEIVEALEKAKG-SKGRPTVIIAKTV 241 (243)
T ss_pred cCcchhHHHHHhcCc-----eEEEEcCcCHHHHHHHHHhhhc-cCCCCeEEEEecc
Confidence 55689999999999 899997 78999999999874 2349999987764
No 138
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=98.77 E-value=2.6e-08 Score=102.51 Aligned_cols=112 Identities=21% Similarity=0.103 Sum_probs=80.6
Q ss_pred cCcccccchHHHHHHHhhhcC----CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCC
Q 007917 436 MQYGSIGWSVGATLGYAQAAK----DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNV 505 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~p----~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~ 505 (585)
...+.+|.++|.|+|+++|.. +..++|++|||+.. .|..|..+++|+++||-||+ |++.... .. .
T Consensus 135 ~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~-~aist~~-~~---~ 209 (362)
T PLN02269 135 GGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNH-YGMGTAE-WR---A 209 (362)
T ss_pred ccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCCC-EeccCch-hh---h
Confidence 455888999999999988853 56799999999987 56667789999666666666 8872100 00 0
Q ss_pred CCCCCHHHHHHHhcCCCCCccEEEec--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007917 506 IKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHK 560 (585)
Q Consensus 506 ~~~~d~~~la~a~G~~~~~~~~~~v~--~~~eL~~al~~a~~--~~~~gp~vIeV~v~~ 560 (585)
....+|.+ +++++ ++++|+ ++.++..++++|.+ .+ +||+|||+.+-+
T Consensus 210 ~~~~~~~~--~~~~~-----p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~tyR 260 (362)
T PLN02269 210 AKSPAYYK--RGDYV-----PGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDTYR 260 (362)
T ss_pred ccchHHHH--hhcCC-----CeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCc
Confidence 12234443 45677 788886 78888888888876 34 899999998865
No 139
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=98.75 E-value=6.2e-08 Score=92.89 Aligned_cols=159 Identities=21% Similarity=0.328 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHhhCC-CCCEEEecCCccccc------cc-c---cc-------ccCC-CeeEeccCcccccchHHHHHHH
Q 007917 391 LRVNVLFKHIQDMLS-GDTAVIAETGDSWFN------CQ-K---LR-------LPEN-CGYEFQMQYGSIGWSVGATLGY 451 (585)
Q Consensus 391 ~~~~~~~~~L~~~l~-~~~ii~~d~G~~~~~------~~-~---~~-------~~~~-~~~~~~~~~g~mG~~lpaAiGa 451 (585)
+....+.=+|..++. +.+-++.|+|...+. .. . ++ +|+. -+-+...+.|--|.+|++|+|.
T Consensus 44 LGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLTGR~~~f~TlRq~gGlSGF~~r~ES~~D~f~~GHsstsiSaa~Gm 123 (270)
T PF13292_consen 44 LGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILTGRRDRFHTLRQYGGLSGFPKRSESEYDAFGAGHSSTSISAALGM 123 (270)
T ss_dssp HCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCTTTCCCGGGTTSTTS--SS--TTT-TT--S--SSSS-HHHHHHHH
T ss_pred ccHHHHHHHHHHHhCCCCCeEEEecccccchhhhccCcHHHhchhhhcCCcCCCCCcccCCCCcccCCccHhHHHHHHHH
Confidence 344556667777774 567788999954321 10 1 11 1111 1123334556667799999999
Q ss_pred hhhc----CCCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeee----------eec-CCCCCCC----
Q 007917 452 AQAA----KDKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEV----------EIH-DGPYNVI---- 506 (585)
Q Consensus 452 alA~----p~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~----------~~~-~~~~~~~---- 506 (585)
+.|+ .++.||+|+|||++. .|..+...+-+ ++||+||+...|.. .+. ...|..+
T Consensus 124 a~ar~l~~~~~~vVaVIGDGalt~Gma~EALN~~g~~~~~-liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~ 202 (270)
T PF13292_consen 124 AVARDLKGEDRKVVAVIGDGALTGGMAFEALNNAGHLKSN-LIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDV 202 (270)
T ss_dssp HHHHHHHTS---EEEEEETTGGGSHHHHHHHHHHHHHT-S-EEEEEEE-SBSSSB--SSHCCC-----------------
T ss_pred HHHHHhcCCCCcEEEEECCcchhHHHHHHHHHHHHhcCCC-EEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHH
Confidence 9986 478999999999997 67777777777 45566666666511 000 1111110
Q ss_pred ---------------------CCCCHHHHHHHhcCCCCCccEEEe---cCHHHHHHHHHHhhhcCCCCeEEEEEEc
Q 007917 507 ---------------------KNWDYTGLVNAIHNGEGKCWTAKV---RSEDELTEAMKTATGEQKDSLCFIEVFV 558 (585)
Q Consensus 507 ---------------------~~~d~~~la~a~G~~~~~~~~~~v---~~~~eL~~al~~a~~~~~~gp~vIeV~v 558 (585)
... +..+.+.||. .|+-+ .+.++|.++|+++.+ .+||+||+|.|
T Consensus 203 ~~~l~~~~~~~~~~~r~~~s~K~~-~~~lFe~LG~-----~Y~GPiDGHdl~~Li~~l~~~K~--~~gPvllHV~T 270 (270)
T PF13292_consen 203 KSLLKKIPPIEEFAKRIKESLKGF-SPNLFEELGF-----DYIGPIDGHDLEELIEVLENAKD--IDGPVLLHVIT 270 (270)
T ss_dssp ---------------------------CCCHHCT------EEEEEEETT-HHHHHHHHHHHCC--SSSEEEEEEE-
T ss_pred HHHHHhhhHHHHHHHHHhhhhhhh-hHHHHHHcCC-----eEEeccCCCCHHHHHHHHHHHhc--CCCCEEEEEeC
Confidence 001 1134667787 77765 378899999999875 79999999986
No 140
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=98.75 E-value=6e-08 Score=102.84 Aligned_cols=112 Identities=22% Similarity=0.248 Sum_probs=91.9
Q ss_pred CcccccchHHHHHHHhhhcC--------------CCcEEEEEcCchhH-----h-HHHHHHhCCCeEEEEEeCCceeeee
Q 007917 437 QYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQ-----E-ISTMIRCGQRSIIFLINNGGYTIEV 496 (585)
Q Consensus 437 ~~g~mG~~lpaAiGaalA~p--------------~~~vv~v~GDGsf~-----e-L~ta~~~~lpv~ivV~NN~~~~~~~ 496 (585)
..|.+|.|++.|+|.++|.. |..++|++|||+++ | ..-|-.++|.=+|++++++...|
T Consensus 114 TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~Isi-- 191 (663)
T COG0021 114 TTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISI-- 191 (663)
T ss_pred ccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCcee--
Confidence 45899999999999999832 35899999999999 3 34456899999999999998888
Q ss_pred eecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEec---CHHHHHHHHHHhhhcCCCCeEEEEEEcC
Q 007917 497 EIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR---SEDELTEAMKTATGEQKDSLCFIEVFVH 559 (585)
Q Consensus 497 ~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~---~~~eL~~al~~a~~~~~~gp~vIeV~v~ 559 (585)
++.-.....-|..+=.+++|+ +.+++. |.+++.+|+++|.. ..++|++|+|+|-
T Consensus 192 ---DG~~~~~f~ed~~~RfeAyGW-----~vi~~~DG~D~e~I~~Ai~~Ak~-~~dkPtlI~~kTi 248 (663)
T COG0021 192 ---DGDTSLSFTEDVAKRFEAYGW-----NVIRVIDGHDLEAIDKAIEEAKA-STDKPTLIIVKTI 248 (663)
T ss_pred ---ccCcccccchhHHHHHHhcCC-----eEEEecCCCCHHHHHHHHHHHHh-cCCCCeEEEEEee
Confidence 443333345689999999999 888665 48999999999984 4679999999985
No 141
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=98.68 E-value=5.8e-08 Score=94.72 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=83.4
Q ss_pred cCcccccchHHHHHHHhhhcC---------CCcEEEEEcCchh--H-----hHHHHHHhCCCe--EEEEEeCCceeeeee
Q 007917 436 MQYGSIGWSVGATLGYAQAAK---------DKRVIACIGDGSF--Q-----EISTMIRCGQRS--IIFLINNGGYTIEVE 497 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~p---------~~~vv~v~GDGsf--~-----eL~ta~~~~lpv--~ivV~NN~~~~~~~~ 497 (585)
..-+.+|...|-|.|+++|.. +.-+|++.|||+| + .|..|.-.++|+ +|+|+.|++|++...
T Consensus 110 ~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~ 189 (265)
T cd02016 110 PNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTD 189 (265)
T ss_pred CCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEec
Confidence 455778888999999988852 3456889999997 2 445555577872 444444456776211
Q ss_pred ecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEec--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCCC
Q 007917 498 IHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHKD 561 (585)
Q Consensus 498 ~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~eL~~al~~a~~--~~~~gp~vIeV~v~~~ 561 (585)
.... ....+..+.|++||+ ++++|+ |++++..+.++|++ .+.+||+|||+.+-|.
T Consensus 190 ~~~~----~~~~~~~~~a~~~gi-----p~~~VdG~D~~aV~~a~~~A~~~~r~g~gp~lIe~~tYR~ 248 (265)
T cd02016 190 PRDS----RSSPYCTDVAKMIGA-----PIFHVNGDDPEAVVRATRLALEYRQKFKKDVVIDLVCYRR 248 (265)
T ss_pred HHHh----cccccHHHHHeecCC-----CEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEEecC
Confidence 1000 134468899999999 899996 88888888888877 4568999999998763
No 142
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=98.68 E-value=9.9e-08 Score=105.74 Aligned_cols=119 Identities=21% Similarity=0.283 Sum_probs=85.4
Q ss_pred CcccccchHHHHHHHhhhc----CCCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeee---c----
Q 007917 437 QYGSIGWSVGATLGYAQAA----KDKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEI---H---- 499 (585)
Q Consensus 437 ~~g~mG~~lpaAiGaalA~----p~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~---~---- 499 (585)
..|..|.+++.|+|.++|. .+..|+|++|||+++ .+..|..+++|+ ++|+||++|++.... +
T Consensus 109 ~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~~l~~-i~ii~~N~~~i~~~~~~~~~~l~ 187 (617)
T TIGR00204 109 SAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMAFEALNHAGDLKTDM-IVILNDNEMSISENVGALSNHLA 187 (617)
T ss_pred CCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccHHHHHHHHHhcCCCE-EEEEECCCcccCCCchHHHHHHH
Confidence 4567788999999988875 466899999999998 566678899998 888899998872110 0
Q ss_pred ----CCCCC-------C----CCC-CC-H-H-------------HHHHHhcCCCCCccEE-Eec--CHHHHHHHHHHhhh
Q 007917 500 ----DGPYN-------V----IKN-WD-Y-T-------------GLVNAIHNGEGKCWTA-KVR--SEDELTEAMKTATG 545 (585)
Q Consensus 500 ----~~~~~-------~----~~~-~d-~-~-------------~la~a~G~~~~~~~~~-~v~--~~~eL~~al~~a~~ 545 (585)
...|. + .++ .+ + . .+.++||+ .+. .|+ +.++|.++|+++..
T Consensus 188 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~f~~~G~-----~~~~~vDGhd~~~l~~al~~ak~ 262 (617)
T TIGR00204 188 QLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVPGTFFEELGF-----NYIGPVDGHDLLELIETLKNAKK 262 (617)
T ss_pred HhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCccchHHHcCC-----cEEcccCCCCHHHHHHHHHHHhc
Confidence 00111 0 011 01 1 1 13788999 777 565 88999999998864
Q ss_pred cCCCCeEEEEEEcCCCCC
Q 007917 546 EQKDSLCFIEVFVHKDDT 563 (585)
Q Consensus 546 ~~~~gp~vIeV~v~~~~~ 563 (585)
.++|++|++.|.+..-
T Consensus 263 --~~~P~~i~~~T~KGkG 278 (617)
T TIGR00204 263 --LKGPVFLHIQTKKGKG 278 (617)
T ss_pred --CCCCEEEEEEecCCCC
Confidence 6789999999987544
No 143
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=98.67 E-value=1.4e-07 Score=103.28 Aligned_cols=126 Identities=18% Similarity=0.224 Sum_probs=85.7
Q ss_pred cCcccccchHHHHHHHhhhcC----CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeee-eecCCCCC
Q 007917 436 MQYGSIGWSVGATLGYAQAAK----DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEV-EIHDGPYN 504 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~p----~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~-~~~~~~~~ 504 (585)
.+.|++|.+|++|+|.++|+. +.+|+|++|||.+. .+..|.+++-| +++|+|+++..+.. .+.++.-.
T Consensus 174 ~~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~n-livIlddN~~~~~~~~q~~g~~~ 252 (641)
T PLN02234 174 FGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSN-MIVILNDNKQVSLPTANLDGPTQ 252 (641)
T ss_pred ECCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCC-EEEEEECCCCCcccccccCCCCC
Confidence 567899999999999998863 45899999999998 55556655645 55566666552100 00011100
Q ss_pred C----------C-C-----CCCHHHHHHHhcCCCCCccEE-Eec--CHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChH
Q 007917 505 V----------I-K-----NWDYTGLVNAIHNGEGKCWTA-KVR--SEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSK 565 (585)
Q Consensus 505 ~----------~-~-----~~d~~~la~a~G~~~~~~~~~-~v~--~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~~~ 565 (585)
+ + . .-+.....++||+ +++ .|+ +.++|.++|+++.....++|++|.+.|.+..-.+
T Consensus 253 ~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~-----~~~g~vDGHd~~~l~~al~~~k~~~~~~P~vI~~~T~KGkGv~ 327 (641)
T PLN02234 253 PVGALSCALSRLQSNCGMIRETSSTLFEELGF-----HYVGPVDGHNIDDLVSILETLKSTKTIGPVLIHVVTEKGRGYP 327 (641)
T ss_pred CcccHHHHHHHhhcccccccCCHHHHHHHcCC-----EEEeeECCCCHHHHHHHHHHHHhcCCCCCEEEEEEEecCCCcc
Confidence 0 0 0 0256789999999 888 775 8899999999876422358999999998765444
Q ss_pred HH
Q 007917 566 EL 567 (585)
Q Consensus 566 ~~ 567 (585)
.+
T Consensus 328 ~~ 329 (641)
T PLN02234 328 YA 329 (641)
T ss_pred hh
Confidence 33
No 144
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=98.65 E-value=1.6e-07 Score=89.26 Aligned_cols=99 Identities=19% Similarity=0.303 Sum_probs=73.7
Q ss_pred cCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH--hHHHHH-------HhCCCeEEEEEeCCceeeeeeecCCCC--C
Q 007917 436 MQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ--EISTMI-------RCGQRSIIFLINNGGYTIEVEIHDGPY--N 504 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~--eL~ta~-------~~~lpv~ivV~NN~~~~~~~~~~~~~~--~ 504 (585)
...|.+|++++.|+|+++.+++..|+|++|||.+. .+++.. .+++.-++.|++|++|.| .++. .
T Consensus 59 ~~~G~LG~gLs~A~G~a~d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i-----~~pt~~~ 133 (227)
T cd02011 59 HEGGELGYSLSHAYGAVFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKI-----SNPTILA 133 (227)
T ss_pred ecccchhhHHHHHHHhhhcCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcc-----cCCcccc
Confidence 34689999999999999999999999999999998 543332 366766777778999988 2211 1
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEec--CHHHHHHHHHHhh
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTAT 544 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~eL~~al~~a~ 544 (585)
..+.-++.+.+++||+ +.+.|+ +++++-+++++++
T Consensus 134 ~~~~e~l~~~~~~yG~-----~~~~VDG~D~~av~~~~a~a~ 170 (227)
T cd02011 134 RISHEELEALFRGYGY-----EPYFVEGDDPETMHQAMAATL 170 (227)
T ss_pred ccCchhHHHHHHhCCC-----ceEEECCCCHHHHHHHHHHHH
Confidence 1245689999999999 888886 5555555555443
No 145
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=98.52 E-value=5.4e-07 Score=101.27 Aligned_cols=114 Identities=20% Similarity=0.196 Sum_probs=90.4
Q ss_pred cCcccccchHHHHHHHhhhcC-----------CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeee
Q 007917 436 MQYGSIGWSVGATLGYAQAAK-----------DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEI 498 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~p-----------~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~ 498 (585)
...|+||.|++.|+|.+++.. +.+|+|++|||.++ .+..|.+++|+=+|+|+|++...+
T Consensus 186 ~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~ql---- 261 (889)
T TIGR03186 186 FPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQRL---- 261 (889)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCcc----
Confidence 456899999999999998522 57899999999999 556678999988899999887776
Q ss_pred cCCCCCC-CC-CCCHHHHHHHhcCCCCCccEEEec---------------------------------------------
Q 007917 499 HDGPYNV-IK-NWDYTGLVNAIHNGEGKCWTAKVR--------------------------------------------- 531 (585)
Q Consensus 499 ~~~~~~~-~~-~~d~~~la~a~G~~~~~~~~~~v~--------------------------------------------- 531 (585)
+++-.. .. .-++.+..++||+ +.++|.
T Consensus 262 -DG~t~~~~~~~e~l~~kf~a~GW-----~vi~v~wG~~wd~l~~~d~~~~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff 335 (889)
T TIGR03186 262 -DGPVRGNGRIIDELESQFAGAGW-----NVIKVLWGSDWDALFARDATGALARAFAHTVDGQFQTFSANDGAYNRARFF 335 (889)
T ss_pred -CCccccccccchHHHHHHHhCCC-----EEEEEeecCchHHhhccccchHHHHHHHhcccHHHHHHhhcchHHHHHHhc
Confidence 443222 11 2489999999999 888882
Q ss_pred --------------------------CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007917 532 --------------------------SEDELTEAMKTATGEQKDSLCFIEVFVHK 560 (585)
Q Consensus 532 --------------------------~~~eL~~al~~a~~~~~~gp~vIeV~v~~ 560 (585)
+++.|.+|+++|.+ ..++|+||.++|-.
T Consensus 336 ~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~-~~~~PTvIla~Tvk 389 (889)
T TIGR03186 336 GQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVR-HEGRPTVILAKTMK 389 (889)
T ss_pred CccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHh-CCCCCEEEEEEeee
Confidence 78889999988874 34689999999864
No 146
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=98.50 E-value=4.2e-06 Score=84.76 Aligned_cols=170 Identities=14% Similarity=0.136 Sum_probs=115.9
Q ss_pred CCCCCCHHHHHHHHHhhCCCCCEEEecCCccccccccc-----cc---cCCCeeEec--cCcccccchHHHHHHHhh---
Q 007917 387 QNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKL-----RL---PENCGYEFQ--MQYGSIGWSVGATLGYAQ--- 453 (585)
Q Consensus 387 ~~~~~~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~~~~-----~~---~~~~~~~~~--~~~g~mG~~lpaAiGaal--- 453 (585)
.+..+...-.++.|.+.+.++.+|+.-+||+..|...+ .. .++..|..+ -.....|+|+-.|+=..-
T Consensus 8 ACaGCget~y~klltqlfG~r~iIaNatGCssI~gg~~P~tp~~~~~~g~Gpaw~nslFEdnAe~g~G~~~a~~~~r~~~ 87 (365)
T cd03377 8 ACAGCGETPYVKLLTQLFGDRMVIANATGCSSIYGGSAPTTPYTTNAKGRGPAWANSLFEDNAEFGLGMRLAVDQRRERA 87 (365)
T ss_pred cCCCCchHHHHHHHHHHhCCCeEEEecCCCceeecCCCCCCcceeccCCCCCccccccccchhHHHhHHHHHHHHHHHHH
Confidence 34567788889999999999999999999987653221 11 011112221 122344555554443220
Q ss_pred ---------------------------------------------h-----------cCC----CcEEEEEcCchhH---
Q 007917 454 ---------------------------------------------A-----------AKD----KRVIACIGDGSFQ--- 470 (585)
Q Consensus 454 ---------------------------------------------A-----------~p~----~~vv~v~GDGsf~--- 470 (585)
. ..+ ..||++.|||...
T Consensus 88 ~~~v~~~~~~~~~~~l~~~~~~wl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~d~l~~~~v~v~gGDG~~ydIG 167 (365)
T cd03377 88 RELVQKLIEKIGDEELKTLLNAWLATEDDIEESRERVAKLKPLLAAEKDELAKELLSLADYLVKKSVWIIGGDGWAYDIG 167 (365)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHccccHHHHHHHHHHHHHHHhccCcHHHHHHHhhhhhccccceEEEecchhhhccc
Confidence 0 112 5899999999877
Q ss_pred --hHHHHHHhCCCeEEEEEeCCceeeee-eecC----C------CC-CCCCCCCHHHHHHHhcCCCCCccEEE--ec-CH
Q 007917 471 --EISTMIRCGQRSIIFLINNGGYTIEV-EIHD----G------PY-NVIKNWDYTGLVNAIHNGEGKCWTAK--VR-SE 533 (585)
Q Consensus 471 --eL~ta~~~~lpv~ivV~NN~~~~~~~-~~~~----~------~~-~~~~~~d~~~la~a~G~~~~~~~~~~--v~-~~ 533 (585)
.|.-+.+.+.+|++||+||..|++.- +..+ + ++ ......|...++.++|.. +.-+ +. ++
T Consensus 168 ~~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~g~~----YVA~~s~~~~~ 243 (365)
T cd03377 168 YGGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSYGNV----YVAQIALGAND 243 (365)
T ss_pred hhhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHcCCC----EEEEEecccCH
Confidence 78888889999999999999999821 1110 1 11 223568999999999982 2223 33 78
Q ss_pred HHHHHHHHHhhhcCCCCeEEEEEEcCCCC
Q 007917 534 DELTEAMKTATGEQKDSLCFIEVFVHKDD 562 (585)
Q Consensus 534 ~eL~~al~~a~~~~~~gp~vIeV~v~~~~ 562 (585)
.++.+++++|++ .+||.+|+|....-.
T Consensus 244 ~~~~~~i~eA~~--~~Gps~I~v~sPC~~ 270 (365)
T cd03377 244 NQTLKAFREAEA--YDGPSLIIAYSPCIA 270 (365)
T ss_pred HHHHHHHHHHhc--CCCCEEEEEEccCcc
Confidence 999999999996 899999999987543
No 147
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=98.43 E-value=1.4e-06 Score=91.58 Aligned_cols=115 Identities=22% Similarity=0.267 Sum_probs=89.9
Q ss_pred eccCcccccchHHHHHHHhhhcC-----CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeeecCCC
Q 007917 434 FQMQYGSIGWSVGATLGYAQAAK-----DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEIHDGP 502 (585)
Q Consensus 434 ~~~~~g~mG~~lpaAiGaalA~p-----~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~ 502 (585)
...+-|.+|.||+.|+|.+++.. +-+|+|++|||+.+ .+..|-.++++-+|+|++|+..++ ++.
T Consensus 113 v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~-----~g~ 187 (632)
T KOG0523|consen 113 VEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISI-----DGA 187 (632)
T ss_pred ceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHhhhhhcccCCEEEEEccccccC-----CCC
Confidence 34456889999999999998743 45899999999998 556677899999999999998876 332
Q ss_pred CCCCCCCCHHH-HHHHhcCCCCCccEEEec--CHHHHHHHHHHhhhcCCCCeEEEEEEcC
Q 007917 503 YNVIKNWDYTG-LVNAIHNGEGKCWTAKVR--SEDELTEAMKTATGEQKDSLCFIEVFVH 559 (585)
Q Consensus 503 ~~~~~~~d~~~-la~a~G~~~~~~~~~~v~--~~~eL~~al~~a~~~~~~gp~vIeV~v~ 559 (585)
...-+..|..+ =.++||+ +...|+ +.++|.+++.+|.. ..++|+.|-..+-
T Consensus 188 t~~~~~~dV~~~r~ea~g~-----~~~~V~~~d~d~i~ka~~~a~~-~k~kpt~i~~~t~ 241 (632)
T KOG0523|consen 188 TSLGFDEDVYQLRFEAFGW-----NVIIVDGGDVDEIRKAIGKAKS-VKGKPTAIKATTF 241 (632)
T ss_pred CcccccccHHHHHHHHhCc-----eEEEEcCcCHHHHHHHHhhhhh-ccCCceeeeeeee
Confidence 22224556666 7899999 888885 78899999998873 4578988887764
No 148
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=98.41 E-value=7.8e-06 Score=84.67 Aligned_cols=157 Identities=18% Similarity=0.106 Sum_probs=125.5
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC---CCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcch
Q 007917 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGG 101 (585)
Q Consensus 25 ~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~---~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~ 101 (585)
..++|++++++..+..|++.+.++|=++.+++++.+.+. -+..++..-+|.+|..|+.| |-.+|.-+...|+|||+
T Consensus 4 ~~~~Gn~AvA~~a~~a~~~~~a~YPITPss~i~e~l~~~~~~~~~~~vq~EsE~~a~s~v~G-A~~aGar~~TaTSg~Gl 82 (365)
T COG0674 4 VVMDGNEAVAYAAIAAGCRVIAAYPITPSSEIAEYLASWKAKVGGVFVQMESEIGAISAVIG-ASYAGARAFTATSGQGL 82 (365)
T ss_pred EeccHHHHHHHHHHhcCCcEEEEeCCCCchHHHHHHHHHHhhcCcEEEEeccHHHHHHHHHH-HHhhCcceEeecCCccH
Confidence 468999999999999999999999999999999988643 36899999999999999999 55566556677999999
Q ss_pred HHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhh----hceeEEEEecCcchhHHHHHHHHH
Q 007917 102 LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQ----AITCSQAVVNNLGDAHELIDTAIS 177 (585)
Q Consensus 102 ~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~k~~~~v~~~~~~~~~l~~A~~ 177 (585)
+-+..++.-|....+|+++...+++....+.- . ..||.+++. .+...... +.+++.+...+||+
T Consensus 83 ~Lm~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p-----~-----~~dq~D~~~~r~~g~~~~~~~--s~qEa~d~t~~Af~ 150 (365)
T COG0674 83 LLMAEALGLAAGTETPLVIVVAQRPLPSTGLP-----I-----KGDQSDLMAARDTGFPILVSA--SVQEAFDLTLLAFN 150 (365)
T ss_pred HHHHHHHHHHHhccCCeEEEEeccCcCCCccc-----c-----cccHHHHHHHHccCceEEeec--cHHHHHHHHHHHHH
Confidence 99999999999999999999999887744321 1 112322221 23333332 78999999999999
Q ss_pred HhhhcCCcEEEEecCCC
Q 007917 178 TALKESKPVYISISCNL 194 (585)
Q Consensus 178 ~a~~~~gPV~i~iP~dv 194 (585)
.|....-||.+.+-.-+
T Consensus 151 iAe~~~~Pvi~~~D~~~ 167 (365)
T COG0674 151 IAEKVLTPVIVLLDGFL 167 (365)
T ss_pred HHHHhcCCEEEeeccch
Confidence 99987889888855444
No 149
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=98.41 E-value=1.6e-06 Score=96.01 Aligned_cols=122 Identities=20% Similarity=0.274 Sum_probs=81.2
Q ss_pred cCcccccchHHHHHHHhhhc----CCCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCce--------eeeee
Q 007917 436 MQYGSIGWSVGATLGYAQAA----KDKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGY--------TIEVE 497 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~----p~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~--------~~~~~ 497 (585)
.+.|.+|.+++.|+|.++|. .++.|+|++|||++. .|..|..+++|+++||-||+.- ++...
T Consensus 141 ~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~~Ealn~a~~~~~~li~iv~~N~~~s~~~~~~~s~~~~ 220 (677)
T PLN02582 141 FGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPP 220 (677)
T ss_pred eccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhhHHHHHHHHHhhCcCEEEEEECCCCccccccccCCCCCC
Confidence 45688899999999998885 356899999999998 6666778899966666666531 11000
Q ss_pred ---e--------cCCCCCC-----------CCCC--CH-H---------------HHHHHhcCCCCCccEE-Eec--CHH
Q 007917 498 ---I--------HDGPYNV-----------IKNW--DY-T---------------GLVNAIHNGEGKCWTA-KVR--SED 534 (585)
Q Consensus 498 ---~--------~~~~~~~-----------~~~~--d~-~---------------~la~a~G~~~~~~~~~-~v~--~~~ 534 (585)
+ .++.|.. ++.. ++ . .+.++||+ +|+ .|+ +.+
T Consensus 221 vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~fe~~G~-----~y~g~iDGHd~~ 295 (677)
T PLN02582 221 VGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGL-----YYIGPVDGHNID 295 (677)
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhhhccCccccchHHHcCC-----eEEeeeCCCCHH
Confidence 0 0111110 0100 01 0 25788999 766 454 889
Q ss_pred HHHHHHHHhhhcCCCCeEEEEEEcCCCC
Q 007917 535 ELTEAMKTATGEQKDSLCFIEVFVHKDD 562 (585)
Q Consensus 535 eL~~al~~a~~~~~~gp~vIeV~v~~~~ 562 (585)
+|.++|+++.....++|+||.|+|.+..
T Consensus 296 ~L~~al~~~k~~~~~~P~vihv~T~KGk 323 (677)
T PLN02582 296 DLVTILREVKSTKTTGPVLIHVVTEKGR 323 (677)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEEecCCC
Confidence 9999999987411169999999998654
No 150
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=98.39 E-value=1.9e-06 Score=95.89 Aligned_cols=85 Identities=25% Similarity=0.248 Sum_probs=66.8
Q ss_pred cCcccccchHHHHHHHhhhc-----------CCCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeee
Q 007917 436 MQYGSIGWSVGATLGYAQAA-----------KDKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEI 498 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~-----------p~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~ 498 (585)
...|+||.|++.|+|.+++. .+++|+|++|||-++ .+..|.+++|+=+|+|+|++...+
T Consensus 186 ~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD~N~~ql---- 261 (885)
T TIGR00759 186 FPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVINCNLQRL---- 261 (885)
T ss_pred eCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCcc----
Confidence 45689999999999998864 357899999999999 556678999988899999887776
Q ss_pred cCCCCCCC-C-CCCHHHHHHHhcCCCCCccEEEe
Q 007917 499 HDGPYNVI-K-NWDYTGLVNAIHNGEGKCWTAKV 530 (585)
Q Consensus 499 ~~~~~~~~-~-~~d~~~la~a~G~~~~~~~~~~v 530 (585)
+++-... . .-++++..++||+ +.++|
T Consensus 262 -DG~v~~~~~i~e~le~~F~a~GW-----~Vi~V 289 (885)
T TIGR00759 262 -DGPVRGNGKIIQELESLFRGAGW-----NVIKV 289 (885)
T ss_pred -CCccccccccchhHHHHHHhcCC-----EEEEE
Confidence 4422221 1 2378999999999 88888
No 151
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=98.35 E-value=3.4e-06 Score=92.89 Aligned_cols=167 Identities=13% Similarity=0.165 Sum_probs=103.9
Q ss_pred CCCHHHHHHHHHhhCC-CCCEEEecCCccccccc-------cccc--cCCC--------eeEeccCcccccchHHHHHHH
Q 007917 390 PLRVNVLFKHIQDMLS-GDTAVIAETGDSWFNCQ-------KLRL--PENC--------GYEFQMQYGSIGWSVGATLGY 451 (585)
Q Consensus 390 ~~~~~~~~~~L~~~l~-~~~ii~~d~G~~~~~~~-------~~~~--~~~~--------~~~~~~~~g~mG~~lpaAiGa 451 (585)
.+....+-=+|..++. +.+-|+.|+|.-.+.-. .+.. ..+. +-+...+.|--+.+|++|+|.
T Consensus 122 nLGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~HKiLTGR~~~f~~Rq~~GlsGf~~r~ES~~D~f~~GHssTSiSaalG~ 201 (701)
T PLN02225 122 SFAAIELTLALHYVFRAPVDNILWDAVEQTYAHKVLTRRWSAIPSRQKNGISGVTSQLESEYDSFGTGHGCNSISAGLGL 201 (701)
T ss_pred CccHHHHHHHHHHHhCCCCCceeeccccccchhhHhcCChhhcCccccCCcCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Confidence 3666777777888774 56667889995432110 1111 0010 112233344455689999999
Q ss_pred hhhc----CCCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeee--------e----------c-CCC
Q 007917 452 AQAA----KDKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVE--------I----------H-DGP 502 (585)
Q Consensus 452 alA~----p~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~--------~----------~-~~~ 502 (585)
+.|+ .++.||+|+|||++. .|+.+...+-| +|||+||+...|... . . ...
T Consensus 202 a~ardl~g~~~~vvaVIGDGaltgGma~EaLN~~g~~~~~-livILNDN~mSi~~n~~~~~~~~vG~ls~~l~~l~~~~~ 280 (701)
T PLN02225 202 AVARDIKGKRDRVVAVIDNATITAGQAYEAMSNAGYLDSN-MIVILNDSRHSLHPNMEEGSKASISALSSIMSKIQSSKI 280 (701)
T ss_pred HHHHHhcCCCCcEEEEEcCcchhhhhHHHHHhhhhccCCC-EEEEEeCCCCCCCCCCCCccCCccchHHHHHHHHhccch
Confidence 9884 467899999999997 66667666666 678888888887322 0 0 001
Q ss_pred CCC-----------CCCC--CH---------------H-HHHHHhcCCCCCccEEEe---cCHHHHHHHHHHhhhcCCCC
Q 007917 503 YNV-----------IKNW--DY---------------T-GLVNAIHNGEGKCWTAKV---RSEDELTEAMKTATGEQKDS 550 (585)
Q Consensus 503 ~~~-----------~~~~--d~---------------~-~la~a~G~~~~~~~~~~v---~~~~eL~~al~~a~~~~~~g 550 (585)
|.. ++.. .+ . .+.+.||. +|+-+ .+.++|..+|+++.....++
T Consensus 281 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~-----~Y~GpvDGHdi~~Li~~l~~~k~~~~~~ 355 (701)
T PLN02225 281 FRKFRELAKAMTKRIGKGMYEWAAKVDEYARGMVGPTGSTLFEELGL-----YYIGPVDGHNIEDLVCVLREVSSLDSMG 355 (701)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccCCCccCcHHHcCC-----eEECccCCCCHHHHHHHHHHHHcCCCCC
Confidence 110 0100 00 1 35678887 67654 37899999999887511249
Q ss_pred eEEEEEEcCCCC
Q 007917 551 LCFIEVFVHKDD 562 (585)
Q Consensus 551 p~vIeV~v~~~~ 562 (585)
|+||+|.|.+..
T Consensus 356 PvlvHv~T~KGk 367 (701)
T PLN02225 356 PVLVHVITEENR 367 (701)
T ss_pred CEEEEEEecCCC
Confidence 999999997653
No 152
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=98.33 E-value=3.7e-06 Score=95.14 Aligned_cols=114 Identities=22% Similarity=0.248 Sum_probs=90.3
Q ss_pred cCcccccchHHHHHHHhhhcC-----------CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeee
Q 007917 436 MQYGSIGWSVGATLGYAQAAK-----------DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEI 498 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~p-----------~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~ 498 (585)
...|+||.|++.|+|.+++.. +++|+||+|||-+. .+..|.+++|+=+|+|+|++...+
T Consensus 200 ~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~l---- 275 (896)
T PRK13012 200 FPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRL---- 275 (896)
T ss_pred cCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccc----
Confidence 456899999999999998743 37899999999999 555678999988888888887665
Q ss_pred cCCCCCCCC--CCCHHHHHHHhcCCCCCccEEEe--------------------------c-------------------
Q 007917 499 HDGPYNVIK--NWDYTGLVNAIHNGEGKCWTAKV--------------------------R------------------- 531 (585)
Q Consensus 499 ~~~~~~~~~--~~d~~~la~a~G~~~~~~~~~~v--------------------------~------------------- 531 (585)
+++-.... --++++..++||+ +.++| +
T Consensus 276 -DG~v~~~~~~~~~l~~~f~a~GW-----~Vi~v~wg~~wd~l~~~d~~~~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff 349 (896)
T PRK13012 276 -DGPVRGNGRIIQELEALFRGAGW-----NVIKVLWGSDWDALFARDTTGALVRRFAETVDGQFQTFKANDGAYNREHFF 349 (896)
T ss_pred -cCccccccccchHHHHHHHhCCC-----EEEEEecccchHHHhcCCCccHHHHHHHhCCcHHHHHHhhcchHHHHHHhc
Confidence 44322211 2389999999999 88888 4
Q ss_pred --------------------------CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007917 532 --------------------------SEDELTEAMKTATGEQKDSLCFIEVFVHK 560 (585)
Q Consensus 532 --------------------------~~~eL~~al~~a~~~~~~gp~vIeV~v~~ 560 (585)
++++|.+|+++|.+ ..++|+||-++|-+
T Consensus 350 ~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~-~~~~PtvIla~Tvk 403 (896)
T PRK13012 350 GQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVR-HKGQPTVILAKTKK 403 (896)
T ss_pred cccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHh-CCCCCEEEEEEeee
Confidence 78889999988874 34689999999865
No 153
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=98.30 E-value=2.9e-06 Score=73.73 Aligned_cols=129 Identities=19% Similarity=0.245 Sum_probs=75.6
Q ss_pred HHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh------
Q 007917 227 ATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV------ 300 (585)
Q Consensus 227 ~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l------ 300 (585)
-++.++++||||++|+|..+.+.+..+.+.+|+|+.++|+++|..+.+.+-+.. +|. -...-.....++
T Consensus 27 v~ammIkkAkrPLlivGp~~~dee~~E~~vKi~ekfnipivaTa~~~~~~~~~~---i~~--~~~~lh~it~~l~Dp~w~ 101 (170)
T COG1880 27 VVAMMIKKAKRPLLIVGPLALDEELLELAVKIIEKFNIPIVATASSMGNLIGRG---IGS--EYINLHAITQYLTDPNWP 101 (170)
T ss_pred HHHHHHHhcCCceEEecccccCHHHHHHHHHHHHhcCCceEecchhhcchhhcc---ccc--chhHHHHHHHHhcCCCCC
Confidence 456789999999999999999778899999999999999999987654332210 000 000000111122
Q ss_pred -----hhCCEEEEeCCccCCcc--cccccccCCCcceEEEcCCceeecCCCccccccHHHHHHHHHHHh
Q 007917 301 -----ESADAYVFVGPIFNDYS--SVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKL 362 (585)
Q Consensus 301 -----~~aD~vl~lG~~~~~~~--~~~~~~~~~~~~~i~id~~~~~~~~~~~~~~~~~~~~l~~L~~~l 362 (585)
.+.|+||++|+..--.. ..+...|. +.+.|.||.....-. ...++.++=+++++.|-+.+
T Consensus 102 G~dg~g~yDlviflG~~~yy~sq~Ls~lKhFs-~i~tiaId~~Y~pnA-d~SFpNl~kde~~~~L~ell 168 (170)
T COG1880 102 GFDGNGNYDLVIFLGSIYYYLSQVLSGLKHFS-NIKTIAIDRYYQPNA-DYSFPNLSKDEYLAYLDELL 168 (170)
T ss_pred CcCCCCCcceEEEEeccHHHHHHHHHHhhhhh-cceEEEeccccCcCc-cccCCCcCHHHHHHHHHHHh
Confidence 26899999998642111 11222222 334444444322110 22355555566777765544
No 154
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=98.26 E-value=3.6e-06 Score=89.12 Aligned_cols=163 Identities=20% Similarity=0.274 Sum_probs=98.8
Q ss_pred CCHHHHHHHHHhhCC-CCCEEEecCCccccc-----cc--c---cc-------ccCC-CeeEeccCcccccchHHHHHHH
Q 007917 391 LRVNVLFKHIQDMLS-GDTAVIAETGDSWFN-----CQ--K---LR-------LPEN-CGYEFQMQYGSIGWSVGATLGY 451 (585)
Q Consensus 391 ~~~~~~~~~L~~~l~-~~~ii~~d~G~~~~~-----~~--~---~~-------~~~~-~~~~~~~~~g~mG~~lpaAiGa 451 (585)
+....+-=+|..++. +++.++.|+|.-.+. .. . ++ +|+. -+-+...+.|--+.+|++|+|.
T Consensus 48 LGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKiLTGR~e~f~tlRq~~GlsGf~~r~ESe~D~f~~GHsSTSiSaalG~ 127 (627)
T COG1154 48 LGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKILTGRREQFDTLRQKDGLSGFPKREESEHDWFGVGHSSTSISAALGM 127 (627)
T ss_pred cChhhhhHHHHHHhCCCCCCeEEecCcccchhHHhcCchhhcchhhhcCCCCCCCCcccCCCcccccCchHHHHHHHhhH
Confidence 455556666777664 567778899954321 00 0 11 1111 0112222334445578888888
Q ss_pred hhhc----CCCcEEEEEcCchhH------hHHHHHHhCC-CeEEEEEeCCceeeeee----------e-cCCCCCCC---
Q 007917 452 AQAA----KDKRVIACIGDGSFQ------EISTMIRCGQ-RSIIFLINNGGYTIEVE----------I-HDGPYNVI--- 506 (585)
Q Consensus 452 alA~----p~~~vv~v~GDGsf~------eL~ta~~~~l-pv~ivV~NN~~~~~~~~----------~-~~~~~~~~--- 506 (585)
+.|+ .++.||+|+|||++- .|+.+- ..+ .-.|||+|++...|... + ....|..+
T Consensus 128 A~A~~~~g~~~~vvaVIGDGAlt~GmA~EALN~ag-~~~~~~~iVILNDNeMSIs~nvGal~~~L~~l~~~~~y~~~~~~ 206 (627)
T COG1154 128 AKARDLKGEDRNVVAVIGDGALTGGMAFEALNNAG-ADLKSNLIVILNDNEMSISPNVGALSKHLARLRSGPFYQSLREG 206 (627)
T ss_pred HHHHHhcCCCCcEEEEECCccccchHHHHHHhhhh-hccCCCEEEEEeCCCcccCCCccHHHHHHHHHhccchHHHHHHH
Confidence 8763 468899999999997 444444 222 33788889888887110 0 01111110
Q ss_pred -----C-------------------CCCHHHHHHHhcCCCCCccEEEe---cCHHHHHHHHHHhhhcCCCCeEEEEEEcC
Q 007917 507 -----K-------------------NWDYTGLVNAIHNGEGKCWTAKV---RSEDELTEAMKTATGEQKDSLCFIEVFVH 559 (585)
Q Consensus 507 -----~-------------------~~d~~~la~a~G~~~~~~~~~~v---~~~~eL~~al~~a~~~~~~gp~vIeV~v~ 559 (585)
. -+.-..+.+.||. +|+-. .+.++|..+|+.+.. .++|+||+|.|.
T Consensus 207 ~kk~l~~~~~~~~~~~~r~e~~~K~l~~~~~lFeelGf-----~YiGPiDGHni~~Li~~Lk~~kd--~~gPvllHv~T~ 279 (627)
T COG1154 207 GKKVLSKVGPPLKRFAKRAEESIKGLLVPGTLFEELGF-----NYIGPIDGHNLEELIPTLKNAKD--LKGPVLLHVVTK 279 (627)
T ss_pred HHHHHHhhchHHHHHHHHHHHhhhcccCchhhHHHhCC-----eeECCcCCCCHHHHHHHHHHHhc--CCCCEEEEEEec
Confidence 0 0111247888998 77655 378999999999986 889999999997
Q ss_pred CC
Q 007917 560 KD 561 (585)
Q Consensus 560 ~~ 561 (585)
+.
T Consensus 280 KG 281 (627)
T COG1154 280 KG 281 (627)
T ss_pred CC
Confidence 53
No 155
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=98.25 E-value=7.3e-06 Score=92.38 Aligned_cols=114 Identities=25% Similarity=0.233 Sum_probs=90.2
Q ss_pred cCcccccchHHHHHHHhhhcC-----------CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeee
Q 007917 436 MQYGSIGWSVGATLGYAQAAK-----------DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEI 498 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~p-----------~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~ 498 (585)
...++||.|++.|+|.+++.. +++|+|++|||-+. .+..|.+++|+=+|+|+|.+...+
T Consensus 192 ~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~l---- 267 (891)
T PRK09405 192 FPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRL---- 267 (891)
T ss_pred cCccccchhHHHHHHHHHhCccccccccccCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCccc----
Confidence 345889999999999998765 57899999999999 556678999988888888887665
Q ss_pred cCCCCCCC--CCCCHHHHHHHhcCCCCCccEEEec---------------------------------------------
Q 007917 499 HDGPYNVI--KNWDYTGLVNAIHNGEGKCWTAKVR--------------------------------------------- 531 (585)
Q Consensus 499 ~~~~~~~~--~~~d~~~la~a~G~~~~~~~~~~v~--------------------------------------------- 531 (585)
+++-... ..-++++..++||+ +.++|.
T Consensus 268 -DG~v~~~~~~~~~l~~~f~a~GW-----~Vi~v~wG~~wd~l~~~d~~g~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ff 341 (891)
T PRK09405 268 -DGPVRGNGKIIQELEGIFRGAGW-----NVIKVIWGSRWDPLLAKDTSGKLVQLMNETVDGDYQTYKAKDGAYVREHFF 341 (891)
T ss_pred -CCccccccccchhHHHHHhhCCC-----EEEEEeccccchhhhccCCccHHHHHHHhCCcHHHHHHHhcccHHHHHHhc
Confidence 4422211 12489999999999 888882
Q ss_pred --------------------------CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007917 532 --------------------------SEDELTEAMKTATGEQKDSLCFIEVFVHK 560 (585)
Q Consensus 532 --------------------------~~~eL~~al~~a~~~~~~gp~vIeV~v~~ 560 (585)
+.++|.+|+++|.+ ..++|+||-++|-+
T Consensus 342 g~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~-~~~~PtvIia~Tvk 395 (891)
T PRK09405 342 GKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVE-HKGQPTVILAKTIK 395 (891)
T ss_pred CCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHh-CCCCCEEEEEecee
Confidence 68889999988874 24789999999865
No 156
>PRK05261 putative phosphoketolase; Provisional
Probab=98.24 E-value=4.9e-06 Score=92.54 Aligned_cols=114 Identities=20% Similarity=0.276 Sum_probs=81.8
Q ss_pred CcccccchHHHHHHHhhhcCCCcEEEEEcCchhH--hHHHHH-------HhCCCeEEEEEeCCceeeeeeecCCCCC--C
Q 007917 437 QYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ--EISTMI-------RCGQRSIIFLINNGGYTIEVEIHDGPYN--V 505 (585)
Q Consensus 437 ~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~--eL~ta~-------~~~lpv~ivV~NN~~~~~~~~~~~~~~~--~ 505 (585)
..|.+|++++.|.|+++..++..|+|++|||.+. .|++.. .+++.-++.|+++++|.| .++.. .
T Consensus 140 ~~G~LG~gls~A~G~Al~~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~Ng~~I-----s~pt~~~~ 214 (785)
T PRK05261 140 EGGELGYSLSHAYGAAFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKI-----ANPTILAR 214 (785)
T ss_pred CCCchhhHHHHHHHHHHcCCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEecCCcC-----CCCccccc
Confidence 4689999999999999999999999999999988 433322 245666677777788887 22211 1
Q ss_pred CCCCCHHHHHHHhcCCCCCccEEEec--CHHHHHHHHHHhhh---c----------CC---CCeE--EEEEEcCC
Q 007917 506 IKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG---E----------QK---DSLC--FIEVFVHK 560 (585)
Q Consensus 506 ~~~~d~~~la~a~G~~~~~~~~~~v~--~~~eL~~al~~a~~---~----------~~---~gp~--vIeV~v~~ 560 (585)
...-++.+..++||+ +.+.|+ +++++..+++++++ . .. .+|. +|.+++..
T Consensus 215 ~~~e~l~~rf~g~Gw-----~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P~wp~Ii~rT~k 284 (785)
T PRK05261 215 ISDEELEALFRGYGY-----EPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRPRWPMIVLRTPK 284 (785)
T ss_pred cCcHhHHHHHHHCCC-----eeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEECCc
Confidence 234589999999999 888886 66666555332221 0 12 5788 99999875
No 157
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=98.17 E-value=5.9e-06 Score=93.66 Aligned_cols=117 Identities=15% Similarity=0.116 Sum_probs=87.2
Q ss_pred ccCcccccchHHHHHHHhhhcC----------CCcEEEEEcCchh-H------hHHHHHHhCCCe--EEEEEeCCceeee
Q 007917 435 QMQYGSIGWSVGATLGYAQAAK----------DKRVIACIGDGSF-Q------EISTMIRCGQRS--IIFLINNGGYTIE 495 (585)
Q Consensus 435 ~~~~g~mG~~lpaAiGaalA~p----------~~~vv~v~GDGsf-~------eL~ta~~~~lpv--~ivV~NN~~~~~~ 495 (585)
..+-+.++.-.|-+.|.+.|.. +.-+|++.|||+| . .|..|.-+++|+ +|+|+.|++|++.
T Consensus 311 ~~npSHLeav~Pva~G~ArA~q~~~~~~~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~t 390 (929)
T TIGR00239 311 AFNPSHLEIVSPVVIGSTRARLDRLNDSPESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFT 390 (929)
T ss_pred cCCCcccccccchhhhHHHHHHHhcCCcccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEE
Confidence 3455778888999999998852 2356889999998 2 666677799998 6777777788873
Q ss_pred eeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEec--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007917 496 VEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHK 560 (585)
Q Consensus 496 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~eL~~al~~a~~--~~~~gp~vIeV~v~~ 560 (585)
...... -......+.|++||+ ++++|+ |++.+..+.+.|++ .+.+||+|||+.+-|
T Consensus 391 T~~~~~----~s~~~~sd~Ak~ygi-----P~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR 450 (929)
T TIGR00239 391 TNPLDA----RSTPYCSDLAKMIQA-----PIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYR 450 (929)
T ss_pred EcHHHh----cCccCHHHHheecCC-----CEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEecc
Confidence 211000 123457789999999 899986 88888888888877 456899999999954
No 158
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=98.15 E-value=5.8e-06 Score=94.17 Aligned_cols=113 Identities=16% Similarity=0.111 Sum_probs=82.0
Q ss_pred cccccchHHHHHHHhhhc----CC------CcEEEEEcCchh-H------hHHHHHHhCCC---eEEEEEeCCceeeeee
Q 007917 438 YGSIGWSVGATLGYAQAA----KD------KRVIACIGDGSF-Q------EISTMIRCGQR---SIIFLINNGGYTIEVE 497 (585)
Q Consensus 438 ~g~mG~~lpaAiGaalA~----p~------~~vv~v~GDGsf-~------eL~ta~~~~lp---v~ivV~NN~~~~~~~~ 497 (585)
.+.+|...|-|.|+++|. .+ .-+|++.|||+| . .|..|.-+++| +++||.| ++|++...
T Consensus 313 pShleav~Pva~G~A~A~q~~~~~~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveN-Nq~g~tT~ 391 (924)
T PRK09404 313 PSHLEIVNPVVEGSVRARQDRRGDGQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVIN-NQIGFTTS 391 (924)
T ss_pred ccccccccCeehhHHHHHHHhcCCcccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEe-CCEEEeeC
Confidence 366788889999998875 23 357889999998 3 55556668887 6665555 55776211
Q ss_pred ecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEec--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007917 498 IHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHK 560 (585)
Q Consensus 498 ~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~eL~~al~~a~~--~~~~gp~vIeV~v~~ 560 (585)
.... ....+..++|++||+ ++++|+ |++.+..+.+.|++ .+.+||+|||+.+-|
T Consensus 392 ~~~~----~s~~~~sd~Ak~~gi-----P~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR 449 (924)
T PRK09404 392 PPDD----RSTPYCTDVAKMVQA-----PIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYR 449 (924)
T ss_pred HHHh----ccchhHHHHHeecCC-----cEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEec
Confidence 1000 123456889999999 899986 88888888888887 457899999999865
No 159
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=97.89 E-value=2.8e-05 Score=76.12 Aligned_cols=113 Identities=20% Similarity=0.155 Sum_probs=75.5
Q ss_pred cCcccccchHHHHHHHhhhcC----CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCC
Q 007917 436 MQYGSIGWSVGATLGYAQAAK----DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNV 505 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~p----~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~ 505 (585)
+|.|-.|..+|.+.|+++|.. +.-.+++-|||+.. .++.|.-++||+++| ..|+.|||...- . ..
T Consensus 162 GGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~IFv-CENN~yGMGTs~-~---Ra 236 (394)
T KOG0225|consen 162 GGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVIFV-CENNHYGMGTSA-E---RA 236 (394)
T ss_pred CccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhhHHHHhCCCEEEE-EccCCCccCcch-h---hh
Confidence 677888889999999999853 44588899999997 677788899996555 555567772100 0 00
Q ss_pred CCCCCHHHHHHHhcCCCCCccEEEecCHH--HHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007917 506 IKNWDYTGLVNAIHNGEGKCWTAKVRSED--ELTEAMKTATG--EQKDSLCFIEVFVHK 560 (585)
Q Consensus 506 ~~~~d~~~la~a~G~~~~~~~~~~v~~~~--eL~~al~~a~~--~~~~gp~vIeV~v~~ 560 (585)
-..+||=+=. .| + ++++|+-.+ .+++|.+.|.+ .+.+||.|+|..|-+
T Consensus 237 sa~teyykRG-~y-i-----PGl~VdGmdvlaVr~a~KfA~~~~~~g~GPilmE~~TYR 288 (394)
T KOG0225|consen 237 SASTEYYKRG-DY-I-----PGLKVDGMDVLAVREATKFAKKYALEGKGPILMEMDTYR 288 (394)
T ss_pred hcChHHHhcc-CC-C-----CceEECCcchhhHHHHHHHHHHHHhcCCCCEEEEEeeee
Confidence 0233444433 12 3 788887443 45667776665 345899999999854
No 160
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.85 E-value=0.00039 Score=82.45 Aligned_cols=155 Identities=15% Similarity=0.064 Sum_probs=113.3
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhh---cCC--C-----CeEEecCchhhHHHhhhhhhhhcCccEEEE
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLI---AEP--E-----LNLVGCCNELNAGYAADGYARSRGVGACVV 95 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~---~~~--~-----i~~i~~~~E~~A~~~A~gyar~tg~~v~~~ 95 (585)
.|+|+++++..... |++.+|++|=++..++.+.+. ... + .+++..-+|.+|+.|+.|.+. +|.-+...
T Consensus 3 ~~~GNeAvA~~A~~-~~~~~~~YPITPss~i~e~l~~~~~~g~~n~~G~~~~~vq~EsE~~A~~av~GA~~-aGara~T~ 80 (1165)
T TIGR02176 3 TMDGNTAAAHVAYA-FSEVAAIYPITPSSTMGEYVDDWAAQGRKNIFGQTVKVVEMQSEAGAAGAVHGALQ-TGALTTTF 80 (1165)
T ss_pred eeeHHHHHHHHHHH-hCCEEEEECCCCCcHHHHHHHHHHHhCCcccCCCCceEEEccchHHHHHHHHhHhh-cCCCEEEe
Confidence 58999999999988 999999999888888888773 211 1 289999999999999999554 55544567
Q ss_pred eCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEE-EEecCcchhHHHHHH
Q 007917 96 TFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDT 174 (585)
Q Consensus 96 t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~l~~ 174 (585)
|+|+|++-+...|..+...++|+|+..+++.....+-. ..+ +..|... .+. +-|. ....+++++.++.-.
T Consensus 81 TSs~GL~LM~e~l~~~ag~~~P~Vi~va~R~~~~~~~~-----i~~--dh~Dv~~-~R~-~G~ivl~s~svQEa~D~al~ 151 (1165)
T TIGR02176 81 TASQGLLLMIPNMYKIAGELLPCVFHVSARAIAAHALS-----IFG--DHQDVMA-ARQ-TGFAMLASSSVQEVMDLALV 151 (1165)
T ss_pred cChhHHHHHHHHHHHHHhccCCEEEEEecCCCCCCCCc-----cCC--CchHHHH-hhc-CCeEEEeCCCHHHHHHHHHH
Confidence 99999999999998777779999999998765532210 111 1123211 122 2232 333578889999999
Q ss_pred HHHHhhhcCCcEEEEec
Q 007917 175 AISTALKESKPVYISIS 191 (585)
Q Consensus 175 A~~~a~~~~gPV~i~iP 191 (585)
|+..|...+-||.+..-
T Consensus 152 A~~lAe~~~~Pvi~~~D 168 (1165)
T TIGR02176 152 AHLATIEARVPFMHFFD 168 (1165)
T ss_pred HHHHHHhcCCCEEEEec
Confidence 99999887778776543
No 161
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.67 E-value=0.00081 Score=79.78 Aligned_cols=169 Identities=12% Similarity=0.121 Sum_probs=114.2
Q ss_pred CCCCCCHHHHHHHHHhhCCCCCEEEecCCccccccccc-----cc---cCCCeeEecc--CcccccchHHHHHHHh----
Q 007917 387 QNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKL-----RL---PENCGYEFQM--QYGSIGWSVGATLGYA---- 452 (585)
Q Consensus 387 ~~~~~~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~~~~-----~~---~~~~~~~~~~--~~g~mG~~lpaAiGaa---- 452 (585)
.+..+...-.++.|.+.+.++.+|..-+||+..|...+ .. .++..|..+. .....|+|+-.|+=..
T Consensus 807 aC~GCge~~y~k~~~ql~g~~~~i~natgcssi~~~~~p~~p~~~~~~g~gp~w~~slfe~~ae~g~G~~~a~~~~r~~~ 886 (1165)
T TIGR02176 807 ACSGCGETPYVKLLTQLFGDRMVIANATGCSSIWGASAPSTPYTTNEQGQGPAWSNSLFEDNAEFGYGMRLSMDKRRERL 886 (1165)
T ss_pred CCCCcchHHHHHHHHHHhCCCeEEEEcCCCcceecCCCCCCcceeccCCCCCcchhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 44568888899999999999999999999987653221 11 0111122211 2233444444443211
Q ss_pred --------------------------------------------h-h-c----------CC----CcEEEEEcCchhH--
Q 007917 453 --------------------------------------------Q-A-A----------KD----KRVIACIGDGSFQ-- 470 (585)
Q Consensus 453 --------------------------------------------l-A-~----------p~----~~vv~v~GDGsf~-- 470 (585)
+ . . .+ +.||++.|||...
T Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~sv~~~~GDG~~~di 966 (1165)
T TIGR02176 887 AELAAKALESDIASGDLKAALNGWLAGKNDIEKSKERVAKLKKLLAGEKDDLLKEIYAVSDLFVKKSVWIIGGDGWAYDI 966 (1165)
T ss_pred HHHHHHHhhcccCcHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCcHHHHHHhhhhhhhccceeEEEecchhhhcc
Confidence 0 0 0 12 4799999999776
Q ss_pred ---hHHHHHHhCCCeEEEEEeCCceeeeeeec-----CC------CC-CCCCCCCHHHHHHHhcCCCCCccEEEec---C
Q 007917 471 ---EISTMIRCGQRSIIFLINNGGYTIEVEIH-----DG------PY-NVIKNWDYTGLVNAIHNGEGKCWTAKVR---S 532 (585)
Q Consensus 471 ---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~-----~~------~~-~~~~~~d~~~la~a~G~~~~~~~~~~v~---~ 532 (585)
.|.-+.+.|.++++||+||..|+..-.+. .+ ++ ......|...+|.++|.. +.-++. +
T Consensus 967 G~~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~g~~----yvA~~~~~~~ 1042 (1165)
T TIGR02176 967 GYGGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTYGYV----YVAQVSMGAN 1042 (1165)
T ss_pred CccchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHCCCC----EEEEEecccC
Confidence 88888999999999999999999721111 01 11 223577999999999982 333442 6
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEEEEcCCC
Q 007917 533 EDELTEAMKTATGEQKDSLCFIEVFVHKD 561 (585)
Q Consensus 533 ~~eL~~al~~a~~~~~~gp~vIeV~v~~~ 561 (585)
+.++.+++++|.+ .+||++|++....-
T Consensus 1043 ~~~~~~~~~~A~~--~~G~s~i~~~~pC~ 1069 (1165)
T TIGR02176 1043 MQQTLKAFREAEA--YDGPSIVIAYSPCI 1069 (1165)
T ss_pred HHHHHHHHHHHHc--CCCCEEEEEECCCc
Confidence 8999999999986 89999999998754
No 162
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=97.51 E-value=8.5e-05 Score=71.99 Aligned_cols=109 Identities=21% Similarity=0.236 Sum_probs=73.6
Q ss_pred ccccchHHHHHHHhhhcC-----CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeee---eeecCCCCC
Q 007917 439 GSIGWSVGATLGYAQAAK-----DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIE---VEIHDGPYN 504 (585)
Q Consensus 439 g~mG~~lpaAiGaalA~p-----~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~---~~~~~~~~~ 504 (585)
+.+-..||-|+|++.|.. ++-+||++|||+.- .|.-|+-...|++ +++-|+||+|. ..++.+..
T Consensus 193 splatqlpqAvGaaYa~k~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvi-f~CRNNG~AISTptseQyr~DG- 270 (432)
T KOG1182|consen 193 SPLATQLPQAVGAAYALKMRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVI-FFCRNNGWAISTPTSEQYRGDG- 270 (432)
T ss_pred chhhhccchhhhhhhhhhhcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEE-EEEcCCCeeeccccHHHhcCCc-
Confidence 455667888888887643 46799999999987 7788888999965 55666679982 11111111
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHH--HHHHHHhhh--cCCCCeEEEEEEcCC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDEL--TEAMKTATG--EQKDSLCFIEVFVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL--~~al~~a~~--~~~~gp~vIeV~v~~ 560 (585)
.+.-..+||+ ..+||+--+-| -.|.++|.+ ...++|+|||..+-+
T Consensus 271 ------Ia~kG~aYGi-----~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYR 319 (432)
T KOG1182|consen 271 ------IAVKGPAYGI-----RSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYR 319 (432)
T ss_pred ------eEEeccccce-----EEEEecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhh
Confidence 1112347898 99999855443 456666654 346799999998743
No 163
>PF02552 CO_dh: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; InterPro: IPR003704 Carbon monoxide dehydrogenase (Cdh) from Methanosarcina mazei (Methanosarcina frisia) Go1 is a Ni2+-, Fe2+-, and S2-containing alpha2beta2 heterotetramer []. The CO dehydrogenase enzyme complex from Methanosarcina thermophila contains a corrinoid/iron-sulphur enzyme composed of two subunits (delta and gamma) []. This family consists of carbon monoxide dehydrogenase I/II beta subunit 1.2.99.2 from EC and CO dehydrogenase (acetyl-CoA synthase epsilon subunit).; GO: 0019385 methanogenesis, from acetate; PDB: 3CF4_G 1YTL_B.
Probab=97.25 E-value=0.00038 Score=63.09 Aligned_cols=127 Identities=19% Similarity=0.180 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEcc-CCccCCCCCCCCceeeecCCCCCHHHHHHh--
Q 007917 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP-SGKGLVPEHHPHFIGTYWGAVSSSFCGEIV-- 300 (585)
Q Consensus 224 ~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~-~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l-- 300 (585)
.++.++.+|++||||++++|..+....-.+.........++|++.|. ..++. ++..|-| +.+ .....+
T Consensus 23 ~~~~aa~~i~kAKrPllvvGp~vl~~~~~~~~~k~~~~~~i~~~at~~~~~~~-~d~~~ky-~~~-------~~~~~l~~ 93 (167)
T PF02552_consen 23 PPEVAAKMIKKAKRPLLVVGPLVLWDWNEEAIEKAIAKKNIPIAATGFNIIGM-PDYRPKY-PKI-------EPENELND 93 (167)
T ss_dssp HSHHHHHHHHHSSSEEEEE-STT--HHHHHHHHHHHHCCTSEEEEETCCHCCH-CSSGCCE--HH-------HHHHHCCS
T ss_pred hHHHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHcCcceeecccccccc-ccccccc-ccc-------cHHHhcCC
Confidence 34788999999999999999999875555667777778999999987 45553 3323322 111 111122
Q ss_pred ---------hhCCEEEEeCCccC--CcccccccccCCCcceEEEcCCceeecCCCccccccHHH--HHHHHHH
Q 007917 301 ---------ESADAYVFVGPIFN--DYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMAD--FLSALAK 360 (585)
Q Consensus 301 ---------~~aD~vl~lG~~~~--~~~~~~~~~~~~~~~~i~id~~~~~~~~~~~~~~~~~~~--~l~~L~~ 360 (585)
.+.|++|++|...- +........+.+..+.+.++.....=. .-.+++++... .++.|.+
T Consensus 94 p~w~g~~g~g~~Dl~iFiGv~~yya~~~Ls~LK~ftp~~~t~~~~~~yhpnA-~~Sf~n~~~e~~~~~~~L~e 165 (167)
T PF02552_consen 94 PHWNGTDGHGNYDLVIFIGVHCYYANQVLSILKHFTPCLKTISCDRYYHPNA-DMSFPNLSKEKLEWLEYLDE 165 (167)
T ss_dssp TT--TTTSS---SEEEEES--HHHHHHHHHHHHHH-TT-EEEE-SSS--TTS-SEEE---GHHHHHHHHHHHH
T ss_pred CCCCccccCCcccEEEEecchHHHHHHHHHHHhccCCceEEEEeccccCCCc-ceecCCCCHHHHHHHHHHHh
Confidence 27999999997532 111112223445556666665432100 11244554444 5555544
No 164
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=96.63 E-value=0.026 Score=51.18 Aligned_cols=102 Identities=17% Similarity=0.213 Sum_probs=73.1
Q ss_pred hHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHhc
Q 007917 444 SVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIH 519 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G 519 (585)
+..+|.|++.+.....++..+..-++. .|..|...++|+++|.-+-....... ..+...|...+.+.+.
T Consensus 46 A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~~~~~~~~~~-------~~~q~~d~~~~~~~~~ 118 (155)
T cd07035 46 AVGMADGYARATGKPGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITGQRPTAGEGR-------GAFQEIDQVALFRPIT 118 (155)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeCCCccccccC-------CcccccCHHHHHHHHh
Confidence 557788888875333344455366666 88888889999999988777655311 0123467888888886
Q ss_pred CCCCCccEEEecCHHHHHHHHHHhhh--cCC-CCeEEEEEE
Q 007917 520 NGEGKCWTAKVRSEDELTEAMKTATG--EQK-DSLCFIEVF 557 (585)
Q Consensus 520 ~~~~~~~~~~v~~~~eL~~al~~a~~--~~~-~gp~vIeV~ 557 (585)
. ..+++++++++...+++|+. ... .||+.|++.
T Consensus 119 ~-----~~~~i~~~~~~~~~i~~A~~~a~~~~~gPv~l~ip 154 (155)
T cd07035 119 K-----WAYRVTSPEEIPEALRRAFRIALSGRPGPVALDLP 154 (155)
T ss_pred c-----eEEEcCCHHHHHHHHHHHHHHhcCCCCCcEEEEec
Confidence 5 78899999999999999886 223 689999875
No 165
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=96.52 E-value=0.03 Score=51.36 Aligned_cols=115 Identities=12% Similarity=0.066 Sum_probs=79.4
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+.+. +++.+|++ |=|... .+.+|...++|+++|.-+-...... . .
T Consensus 39 i~~v~~rhE~~---A~~mA~gyar~t-g~~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g~~~~~~~~----~---~ 107 (164)
T cd07039 39 IEFIQVRHEEA---AAFAASAEAKLT-GKLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDELG----T---D 107 (164)
T ss_pred CeEEEeCCHHH---HHHHHHHHHHHh-CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEecCCcccccC----C---C
Confidence 44555444443 334577777765 45666555 444444 8889999999999998655533221 1 1
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~~~~gp~vIeV~v~~ 560 (585)
.+...|...+.+.+-- ...++++++++..++++|+. ....||+.|+|..|-
T Consensus 108 ~~q~~d~~~~~~~~tk-----~~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~dv 160 (164)
T cd07039 108 YFQEVDLLALFKDVAV-----YNETVTSPEQLPELLDRAIRTAIAKRGVAVLILPGDV 160 (164)
T ss_pred CCcccCHHHHHHHhhc-----EEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChHH
Confidence 2344688899999987 89999999999988888876 235699999998773
No 166
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=96.45 E-value=0.027 Score=50.83 Aligned_cols=101 Identities=16% Similarity=0.191 Sum_probs=70.4
Q ss_pred hHHHHHHHhhhcCCCcEEEEE-cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHhc
Q 007917 444 SVGATLGYAQAAKDKRVIACI-GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIH 519 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v~-GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G 519 (585)
+..+|.|++.+.. ++++.+. |.|... .|.++...++|+++++-..+..... . ......|...+.+.+.
T Consensus 47 a~~~A~G~a~~~~-~~v~~~~~gpg~~~~~~~l~~a~~~~~Pvl~i~~~~~~~~~~----~---~~~q~~~~~~~~~~~~ 118 (154)
T cd06586 47 AAGAAAGYARAGG-PPVVIVTSGTGLLNAINGLADAAAEHLPVVFLIGARGISAQA----K---QTFQSMFDLGMYRSIP 118 (154)
T ss_pred HHHHHHHHHHhhC-CEEEEEcCCCcHHHHHHHHHHHHhcCCCEEEEeCCCChhhhc----c---CcccccCHHHHHHHhh
Confidence 5678899988764 5555556 777665 7778888999988777555543321 1 1124567788888887
Q ss_pred CCCCCccEEEecCHHHHHHHHHHhhh--cCCCCeEEEEEE
Q 007917 520 NGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVF 557 (585)
Q Consensus 520 ~~~~~~~~~~v~~~~eL~~al~~a~~--~~~~gp~vIeV~ 557 (585)
. ....+.+.+++...+.+++. ....||++|++.
T Consensus 119 ~-----~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~ip 153 (154)
T cd06586 119 E-----ANISSPSPAELPAGIDHAIRTAYASQGPVVVRLP 153 (154)
T ss_pred h-----eEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcc
Confidence 6 67778888888777777764 234789999874
No 167
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=96.32 E-value=0.2 Score=45.48 Aligned_cols=148 Identities=18% Similarity=0.117 Sum_probs=89.0
Q ss_pred HHHHHHHHHHcCCCEEEecCCCChHHHHHhhh-cCCCCeEE-ecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHHH
Q 007917 30 GRHLARRLVEIGAKDVFSVPGDFNLTLLDHLI-AEPELNLV-GCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLN 106 (585)
Q Consensus 30 a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~-~~~~i~~i-~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~ 106 (585)
++++.+.+++.. +.++.-..-.....+..+. +.++ |++ ....|++.+.+|.|.|.. |. .++.+. ..-...++.
T Consensus 4 ~~~l~~~~~~~~-~~v~~~~Dl~~~~~~~~~~~~~p~-r~i~~gIaE~~~vg~A~GlA~~-G~~pi~~~~-~~f~~ra~d 79 (156)
T cd07033 4 GEALLELAKKDP-RIVALSADLGGSTGLDKFAKKFPD-RFIDVGIAEQNMVGIAAGLALH-GLKPFVSTF-SFFLQRAYD 79 (156)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCCCcHHHHHhCCC-CeEEeChhHHHHHHHHHHHHHC-CCeEEEEEC-HHHHHHHHH
Confidence 456666665543 3333322211112222232 2344 444 678999999999999975 45 555544 444555778
Q ss_pred HHH-HhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEE-EEecCcchhHHHHHHHHHHhhhcCC
Q 007917 107 AIA-GAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDTAISTALKESK 184 (585)
Q Consensus 107 gl~-~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~l~~A~~~a~~~~g 184 (585)
.|. .+...+.|++++....... .+.+..- |+..++..+++.+.... ....+++++..+++.|++ .++
T Consensus 80 qi~~~~a~~~~pv~~~~~~~g~~-~~~~G~t------H~~~~~~a~~~~iPg~~v~~Ps~~~~~~~ll~~a~~----~~~ 148 (156)
T cd07033 80 QIRHDVALQNLPVKFVGTHAGIS-VGEDGPT------HQGIEDIALLRAIPNMTVLRPADANETAAALEAALE----YDG 148 (156)
T ss_pred HHHHHHhccCCCeEEEEECCcEe-cCCCCcc------cchHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHh----CCC
Confidence 887 7788999999998754332 1122122 23345678888875533 445666676666666654 357
Q ss_pred cEEEEecC
Q 007917 185 PVYISISC 192 (585)
Q Consensus 185 PV~i~iP~ 192 (585)
|++|.+|.
T Consensus 149 P~~irl~~ 156 (156)
T cd07033 149 PVYIRLPR 156 (156)
T ss_pred CEEEEeeC
Confidence 99999874
No 168
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=96.25 E-value=0.04 Score=50.95 Aligned_cols=115 Identities=14% Similarity=0.187 Sum_probs=82.0
Q ss_pred CCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCc-hhH----hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCC
Q 007917 429 NCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQ----EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPY 503 (585)
Q Consensus 429 ~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDG-sf~----eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~ 503 (585)
+.+++....-.+ +..+|-|.+.+. +|+.+|++-=| ++. .|..|...++|+++|.-.-..+... .
T Consensus 39 ~i~~i~~~~E~~---A~~~A~g~ar~~-g~~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~----~--- 107 (172)
T PF02776_consen 39 GIRFIPVRHEQG---AAFMADGYARAT-GRPGVVIVTSGPGATNALTGLANAYADRIPVLVITGQRPSAGEG----R--- 107 (172)
T ss_dssp TSEEEE-SSHHH---HHHHHHHHHHHH-SSEEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEEESSGGGTT----T---
T ss_pred ceeeecccCcch---hHHHHHHHHHhh-ccceEEEeecccchHHHHHHHhhcccceeeEEEEecccchhhhc----c---
Confidence 455665554433 456788888775 66777766543 233 8888889999999998877766541 0
Q ss_pred CCCC-CCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh---cCCCCeEEEEEEcC
Q 007917 504 NVIK-NWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG---EQKDSLCFIEVFVH 559 (585)
Q Consensus 504 ~~~~-~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~---~~~~gp~vIeV~v~ 559 (585)
..+. ..|...+++.+.- ..+++++++++..++++|+. ....+|+.|+|..|
T Consensus 108 ~~~q~~~d~~~~~~~~~k-----~~~~v~~~~~~~~~~~~A~~~a~~~~~gPv~l~ip~d 162 (172)
T PF02776_consen 108 GAFQQEIDQQSLFRPVTK-----WSYRVTSPDDLPEALDRAFRAATSGRPGPVYLEIPQD 162 (172)
T ss_dssp TSTTSSTHHHHHHGGGSS-----EEEEECSGGGHHHHHHHHHHHHHHCSTSEEEEEEEHH
T ss_pred cccccchhhcchhccccc-----hhcccCCHHHHHHHHHHHHHHhccCCCccEEEEcChh
Confidence 1122 4588999999987 89999999999999988876 24689999999876
No 169
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=96.19 E-value=0.02 Score=57.23 Aligned_cols=113 Identities=26% Similarity=0.336 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHH
Q 007917 220 GLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEI 299 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~ 299 (585)
..++++++++++|.+||||+++-+... ..++.+.-.+|+|.+|+-+ .+..+- -.-|..+|........-..-+.
T Consensus 64 ~~deAie~Aa~ILv~aKrPllyg~s~t-scEA~~~gielaE~~gavi-D~~asv----chGp~~~alqe~g~p~~Tlgev 137 (429)
T COG1029 64 DYDEAIEKAAEILVNAKRPLLYGWSST-SCEAQELGIELAEKLGAVI-DSNASV----CHGPSVLALQEAGKPTATLGEV 137 (429)
T ss_pred cHHHHHHHHHHHHHhccCceEeccccc-hHHHHHHHHHHHHHhCcEe-cCCCcc----ccchHHHHHHhcCCcccchhhh
Confidence 357889999999999999999866544 4478899999999999632 221110 0112222221111111123344
Q ss_pred hhhCCEEEEeCCccCCcccc---cccccC---------CCcceEEEcCCce
Q 007917 300 VESADAYVFVGPIFNDYSSV---GYSLLI---------KKEKAIIVQPHRV 338 (585)
Q Consensus 300 l~~aD~vl~lG~~~~~~~~~---~~~~~~---------~~~~~i~id~~~~ 338 (585)
-..+|+|+..|+...+.... .|+.|+ .++++|.||+...
T Consensus 138 KNraDviVyWGtNP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD~RkT 188 (429)
T COG1029 138 KNRADVIVYWGTNPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVDPRKT 188 (429)
T ss_pred cccccEEEEeCCCcccccchhhhhcccccccccccCCcccceEEEEecCcC
Confidence 46899999999864322211 111111 2356888888654
No 170
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=96.00 E-value=0.011 Score=59.46 Aligned_cols=92 Identities=14% Similarity=0.256 Sum_probs=57.8
Q ss_pred cccccchHHHHHHHhhhcCCCcEEEEEcCchhH--hHHHHHHhC-------CCeEEEEEeCCceeeeeeecCCCCCCCCC
Q 007917 438 YGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ--EISTMIRCG-------QRSIIFLINNGGYTIEVEIHDGPYNVIKN 508 (585)
Q Consensus 438 ~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~--eL~ta~~~~-------lpv~ivV~NN~~~~~~~~~~~~~~~~~~~ 508 (585)
.|-+||+++-|.||.+-+||.-|+||+|||.+- -+.|+.+.+ --.++=|++=+||-|.. ...+..+++
T Consensus 139 GGELGYaLshA~GA~~DnPdliv~~vvGDGEaETGplA~sWh~~kflnP~~dGaVLPILhLNG~KI~~---pTil~r~~~ 215 (379)
T PF09364_consen 139 GGELGYALSHAFGAVFDNPDLIVACVVGDGEAETGPLAASWHSNKFLNPATDGAVLPILHLNGYKISN---PTILARMSD 215 (379)
T ss_dssp -SSTS-HHHHHHHHHTT-TT-EEEEEEETTGGGSHHHHHHGGGGGSS-TTTS-EEEEEEEE-SBSSSS---B-HHHHS-H
T ss_pred CcchhhHHHHHhhcccCCCCeEEEEEecCCcccCCcccccccccceeCcccCceeeceEEecCccccC---CeEeeecCH
Confidence 477999999999999999999999999999998 577776421 12344444445666610 001222344
Q ss_pred CCHHHHHHHhcCCCCCccEEEecC--HHHHH
Q 007917 509 WDYTGLVNAIHNGEGKCWTAKVRS--EDELT 537 (585)
Q Consensus 509 ~d~~~la~a~G~~~~~~~~~~v~~--~~eL~ 537 (585)
-++.++.+++|. +-+.|+. ++++-
T Consensus 216 ~eL~~lf~G~Gy-----~p~~Veg~dp~~~h 241 (379)
T PF09364_consen 216 EELEALFRGYGY-----EPIFVEGDDPADMH 241 (379)
T ss_dssp HHHHHHHHHTTE-----EEEEEE---HHHHH
T ss_pred HHHHHHHHhCCC-----eEEEEecCCHHHHH
Confidence 568888999998 6666654 54443
No 171
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=95.91 E-value=1.2 Score=46.16 Aligned_cols=160 Identities=17% Similarity=0.093 Sum_probs=89.3
Q ss_pred ccCCcccHHHHHHHHHHHcCCC--EEEecCCCCh-----HHHHHhhhcCC-CCeEE-ecCchhhHHHhhhhhhhhcCccE
Q 007917 22 GGASVGTLGRHLARRLVEIGAK--DVFSVPGDFN-----LTLLDHLIAEP-ELNLV-GCCNELNAGYAADGYARSRGVGA 92 (585)
Q Consensus 22 ~~~~~~~~a~~i~~~L~~~Gv~--~vFg~PG~~~-----~~l~~al~~~~-~i~~i-~~~~E~~A~~~A~gyar~tg~~v 92 (585)
|-...++..+++.+.|.+..-+ .++.+.++.- ...++.+.+.- .=|++ ....|++++.+|.|+|....+.+
T Consensus 30 ~~~~~~~~~~~~~~~L~~~~~~d~~iv~l~~D~~~~G~~~~~~~~f~~~fgP~R~id~GIaEq~~vg~AaGlA~~G~~Pv 109 (355)
T PTZ00182 30 GATVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPITEQGFAGFAIGAAMNGLRPI 109 (355)
T ss_pred ccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccccCCchhhhHHHHHHhCCCceeecCccHHHHHHHHHHHHhCCCEEE
Confidence 4344567777777777776443 4555544422 33345554321 12444 66899999999999999643466
Q ss_pred EEEeCCcchHHHHHHHHH--hhh-------cCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEE-EEe
Q 007917 93 CVVTFTVGGLSVLNAIAG--AYS-------ENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVV 162 (585)
Q Consensus 93 ~~~t~GpG~~n~~~gl~~--A~~-------~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~-~~v 162 (585)
+.....+=+..++.-|.+ |+. -++||+++...-. .+.+..-|+ +..+ .+++.+.-.. ...
T Consensus 110 v~~~fa~Fl~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~---~g~~G~tHs-----~~~e--a~lr~iPn~~V~~P 179 (355)
T PTZ00182 110 AEFMFADFIFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGA---VGHGGAYHS-----QSFE--AYFAHVPGLKVVAP 179 (355)
T ss_pred EEechhhHHHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCC---CCCCCCccc-----chHH--HHHhcCCCCEEEee
Confidence 654334333334443322 333 3688877642211 121111221 2222 7777765544 334
Q ss_pred cCcchhHHHHHHHHHHhhhcCCcEEEEecCCCC
Q 007917 163 NNLGDAHELIDTAISTALKESKPVYISISCNLP 195 (585)
Q Consensus 163 ~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~ 195 (585)
.++.++..+++.|++ .++|+||..|..+.
T Consensus 180 sd~~e~~~~l~~a~~----~~~P~~i~~p~~l~ 208 (355)
T PTZ00182 180 SDPEDAKGLLKAAIR----DPNPVVFFEPKLLY 208 (355)
T ss_pred CCHHHHHHHHHHHHh----CCCcEEEEeehHHh
Confidence 566676666666554 47999999887654
No 172
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=95.49 E-value=0.13 Score=47.07 Aligned_cols=105 Identities=10% Similarity=0.032 Sum_probs=69.3
Q ss_pred hHHHHHHHhhhcCCCcEEEEE-cCchhH----hHHHHHHhCCCeEEEEEeCCceeeee--eecCCCCCCCCCC-CHHHHH
Q 007917 444 SVGATLGYAQAAKDKRVIACI-GDGSFQ----EISTMIRCGQRSIIFLINNGGYTIEV--EIHDGPYNVIKNW-DYTGLV 515 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v~-GDGsf~----eL~ta~~~~lpv~ivV~NN~~~~~~~--~~~~~~~~~~~~~-d~~~la 515 (585)
+.-+|-|.+.+. ++.+|++ ...++. .|.+|...+.|+++|.-+.......+ .++.. ... ... |...+.
T Consensus 47 A~~mA~gyar~t--~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~-~~~-~~~~d~~~~~ 122 (162)
T cd07038 47 AGYAADGYARVK--GLGALVTTYGVGELSALNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHT-LGD-GDFDVFLKMF 122 (162)
T ss_pred HHHHHHHHHHhh--CCEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEecCCCccccccccceeec-ccc-cchHHHHHHH
Confidence 446677887776 4666665 344444 88899999999999987655322110 00000 000 112 467888
Q ss_pred HHhcCCCCCccEEEecCHHHHHHHHHHhhh--cCCCCeEEEEEE
Q 007917 516 NAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVF 557 (585)
Q Consensus 516 ~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~~~~gp~vIeV~ 557 (585)
+.+.- ...+|++++++...+++|+. ....||+.||+.
T Consensus 123 ~~~tk-----~~~~v~~~~~i~~~v~~A~~~a~s~~gPV~l~iP 161 (162)
T cd07038 123 EEITC-----AAARLTDPENAAEEIDRVLRTALRESRPVYIEIP 161 (162)
T ss_pred Hhhee-----EEEEeCCHHHHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 88876 78899999999998888876 234589999974
No 173
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=95.02 E-value=0.72 Score=42.33 Aligned_cols=113 Identities=16% Similarity=0.085 Sum_probs=71.2
Q ss_pred EEecCchhhHHHhhhhhhhhcCccEEEEeCCcchHHHHHHHHHhhhc-CCcEEEEeCCCCCccCCCccceeeccCCCChH
Q 007917 68 LVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSE-NLPVICIVGGPNSNDYGTNRILHHTIGLPDFT 146 (585)
Q Consensus 68 ~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~gl~~A~~~-~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~ 146 (585)
+-....|++.+.+|.|+|....+.+ +.+..+-...+...+..+-.. ++|+|+...- ... .+.... +++..
T Consensus 52 ~~~gIaE~~~vg~a~GlA~~G~~pi-~~~~~~f~~~a~~~~~~~~~~~~~~~v~~~~~-g~~-~g~~G~------tH~~~ 122 (168)
T smart00861 52 IDTGIAEQAMVGFAAGLALAGLRPV-VAIFFTFFDRAKDQIRSDGAMGRVPVVVRHDS-GGG-VGEDGP------THHSQ 122 (168)
T ss_pred EEcCcCHHHHHHHHHHHHHcCCCcE-EEeeHHHHHHHHHHHHHhCcccCCCEEEEecC-ccc-cCCCCc------cccch
Confidence 3477899999999999999865433 334455555566666554444 4666555521 111 122111 13345
Q ss_pred HHHHHhhhceeE-EEEecCcchhHHHHHHHHHHhhhcCCcEEEEecC
Q 007917 147 QELRCFQAITCS-QAVVNNLGDAHELIDTAISTALKESKPVYISISC 192 (585)
Q Consensus 147 d~~~~~~~~~k~-~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~ 192 (585)
++..+++.+... .....+++++..+++.+++ ...+|++|.++.
T Consensus 123 ~~~~~~~~iP~~~v~~P~~~~e~~~~l~~a~~---~~~~p~~i~~~~ 166 (168)
T smart00861 123 EDEALLRAIPGLKVVAPSDPAEAKGLLRAAIR---RDDGPPVIRLER 166 (168)
T ss_pred hHHHHHhcCCCcEEEecCCHHHHHHHHHHHHh---CCCCCEEEEecC
Confidence 667888887643 3566788888888888872 235899999874
No 174
>PRK08611 pyruvate oxidase; Provisional
Probab=94.77 E-value=0.21 Score=55.70 Aligned_cols=114 Identities=10% Similarity=0.096 Sum_probs=81.2
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|.|.+.+. +++.+|++ |=|... .|.+|...++|+++|.-.-...... . .
T Consensus 44 i~~i~~rhE~~---A~~mAdgyar~t-g~~gv~~~t~GPG~~N~l~gla~A~~~~~Pvl~ItG~~~~~~~~----~---~ 112 (576)
T PRK08611 44 IKFIQVRHEEV---AALAAAAYAKLT-GKIGVCLSIGGPGAIHLLNGLYDAKMDHVPVLALAGQVTSDLLG----T---D 112 (576)
T ss_pred CeEEEeCcHHH---HHHHHHHHHHHh-CCceEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCcccccC----C---C
Confidence 44555443332 445678887765 56777766 666666 8899999999999998765543321 1 1
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--cCCCCeEEEEEEcC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~~~~gp~vIeV~v~ 559 (585)
.+..+|...+.+.+.- ...++++++++..++++|+. ....||+.|++..|
T Consensus 113 ~~q~~d~~~l~~~itk-----~~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~D 164 (576)
T PRK08611 113 FFQEVNLEKMFEDVAV-----YNHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDD 164 (576)
T ss_pred CccccCHHHHhhcccc-----eeEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence 1344688899998876 78899999999988888765 23569999999987
No 175
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=94.58 E-value=0.62 Score=44.03 Aligned_cols=116 Identities=17% Similarity=0.086 Sum_probs=72.6
Q ss_pred HHHhhhhhhhhcC-c-cEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCc-c---ceeeccC-CCChHHHH
Q 007917 77 AGYAADGYARSRG-V-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTN-R---ILHHTIG-LPDFTQEL 149 (585)
Q Consensus 77 A~~~A~gyar~tg-~-~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~-~---~~~~~~~-~~~~~d~~ 149 (585)
+.-+|.|.+.+.. + .+|++- .-++.-.+..|..|...++|+++|.-+......-+. + .-++..+ .....|..
T Consensus 58 ~lpaaiGa~la~p~r~vv~i~G-DG~f~m~~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~d~~ 136 (196)
T cd02013 58 ALPAIIGAKAAAPDRPVVAIAG-DGAWGMSMMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESESFA 136 (196)
T ss_pred HHHHHHHHHHhCCCCcEEEEEc-chHHhccHHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCcccccCCCCCHH
Confidence 4457788776653 4 444443 333444578899999999999999966444311110 0 0000000 00123567
Q ss_pred HHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCCC
Q 007917 150 RCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (585)
Q Consensus 150 ~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (585)
++.+.+-....++.+++++...+++|+..+. ..||+.|++..|-
T Consensus 137 ~lA~a~G~~~~~v~~~~el~~al~~a~~~~~-~~~p~liev~v~~ 180 (196)
T cd02013 137 KIAEACGAKGITVDKPEDVGPALQKAIAMMA-EGKTTVIEIVCDQ 180 (196)
T ss_pred HHHHHCCCEEEEECCHHHHHHHHHHHHhcCC-CCCeEEEEEEeCc
Confidence 7888887778899998888888888775432 3799999999764
No 176
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=94.49 E-value=2.2 Score=39.18 Aligned_cols=149 Identities=15% Similarity=0.082 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCCh----HHHHHhhhc-CCCCeEE-ecCchhhHHHhhhhhhhhcCccEEEEeCCcchH
Q 007917 29 LGRHLARRLVEIGAKDVFSVPGDFN----LTLLDHLIA-EPELNLV-GCCNELNAGYAADGYARSRGVGACVVTFTVGGL 102 (585)
Q Consensus 29 ~a~~i~~~L~~~Gv~~vFg~PG~~~----~~l~~al~~-~~~i~~i-~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~ 102 (585)
.++.|.+.+++. -+.++.-..... ...++.+.+ .++.|++ ....|++.+.+|.|+|+...+.++-.+..+=+.
T Consensus 3 ~~~~l~~~~~~~-~~vv~l~~D~~~~~g~~~~~~~~~~~~p~~R~~~~gIaEq~~vg~AaGlA~~G~~pi~~~~~a~Fl~ 81 (167)
T cd07036 3 INEALDEEMERD-PRVVVLGEDVGDYGGVFKVTKGLLDKFGPDRVIDTPIAEAGIVGLAVGAAMNGLRPIVEIMFADFAL 81 (167)
T ss_pred HHHHHHHHHhcC-CCEEEECcccccCCCcchHhHHHHHhCCCceEEeCCCcHHHHHHHHHHHHHcCCEEEEEeehHHHHH
Confidence 346666665543 444444333211 235566654 3555777 568999999999999996433555446666555
Q ss_pred HHHHHHHH--hhhc-------CCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEE-EecCcchhHHHH
Q 007917 103 SVLNAIAG--AYSE-------NLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQA-VVNNLGDAHELI 172 (585)
Q Consensus 103 n~~~gl~~--A~~~-------~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~-~v~~~~~~~~~l 172 (585)
.++.-+.+ ++.+ +.||+++...-.. .+.+.. | + ..| ..+++.+..... ...+++++..++
T Consensus 82 ra~dQi~~~~a~~~~~~~~~~~~pv~i~~~~gg~--~~~G~t-h-s-----~~~-~a~lr~iPg~~V~~Psd~~e~~~~l 151 (167)
T cd07036 82 PAFDQIVNEAAKLRYMSGGQFKVPIVIRGPNGGG--IGGGAQ-H-S-----QSL-EAWFAHIPGLKVVAPSTPYDAKGLL 151 (167)
T ss_pred HHHHHHHHHHHHHHHhcCCCccCCEEEEEeCCCC--CCcChh-h-h-----hhH-HHHHhcCCCCEEEeeCCHHHHHHHH
Confidence 55555532 3333 5899888743221 111211 1 1 123 578887755443 345666666666
Q ss_pred HHHHHHhhhcCCcEEEEecC
Q 007917 173 DTAISTALKESKPVYISISC 192 (585)
Q Consensus 173 ~~A~~~a~~~~gPV~i~iP~ 192 (585)
+.+++ .+||+.+--|.
T Consensus 152 ~~~~~----~~~P~~~~e~k 167 (167)
T cd07036 152 KAAIR----DDDPVIFLEHK 167 (167)
T ss_pred HHHHh----CCCcEEEEecC
Confidence 66554 46999988763
No 177
>PLN02470 acetolactate synthase
Probab=94.41 E-value=0.82 Score=51.14 Aligned_cols=152 Identities=14% Similarity=0.128 Sum_probs=95.1
Q ss_pred CCCHH-HHHHHHHhhCCCCCEEEecCCccccccc-cccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--c
Q 007917 390 PLRVN-VLFKHIQDMLSGDTAVIAETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--G 465 (585)
Q Consensus 390 ~~~~~-~~~~~L~~~l~~~~ii~~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--G 465 (585)
+++.. .+++.|.+ +.=+. ++.=.|.+..... .+....+.+++....-.+ +.-+|-|.+.+. +++.+|++ |
T Consensus 12 ~~~~a~~l~~~L~~-~GV~~-vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~---A~~~Adgyar~t-g~~gv~~~t~G 85 (585)
T PLN02470 12 PRKGADILVEALER-EGVDT-VFAYPGGASMEIHQALTRSNCIRNVLCRHEQG---EVFAAEGYAKAS-GKVGVCIATSG 85 (585)
T ss_pred cccHHHHHHHHHHH-cCCCE-EEEcCCcccHHHHHHHhccCCceEEEeccHHH---HHHHHHHHHHHh-CCCEEEEECCC
Confidence 44443 34444443 44344 3444455433221 122222355665554433 445688888765 46766655 5
Q ss_pred CchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHH
Q 007917 466 DGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKT 542 (585)
Q Consensus 466 DGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~ 542 (585)
=|... .+.+|...+.|+++|.-.-....+. .+ .+...|...+.+.+-- ..++|.+++++...+++
T Consensus 86 PG~~N~l~gia~A~~~~~Pvl~I~G~~~~~~~~----~~---~~q~~d~~~l~~~~tk-----~~~~v~~~~~i~~~l~~ 153 (585)
T PLN02470 86 PGATNLVTGLADALLDSVPLVAITGQVPRRMIG----TD---AFQETPIVEVTRSITK-----HNYLVMDVEDIPRVIRE 153 (585)
T ss_pred ccHHHHHHHHHHHHhcCCcEEEEecCCChhhcC----CC---cCcccchhhhhhhheE-----EEEEcCCHHHHHHHHHH
Confidence 66665 8999999999999997654433221 11 1244677888888876 78899999999999999
Q ss_pred hhh--c-CCCCeEEEEEEcC
Q 007917 543 ATG--E-QKDSLCFIEVFVH 559 (585)
Q Consensus 543 a~~--~-~~~gp~vIeV~v~ 559 (585)
|+. . ...||+.|+|..|
T Consensus 154 A~~~A~s~~~GPV~l~iP~D 173 (585)
T PLN02470 154 AFFLASSGRPGPVLVDIPKD 173 (585)
T ss_pred HHHHhcCCCCCeEEEEecCc
Confidence 876 2 2359999999987
No 178
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=94.18 E-value=0.69 Score=41.99 Aligned_cols=104 Identities=14% Similarity=0.052 Sum_probs=67.8
Q ss_pred cchHHHHHHHhhhcCCCcEEEEEcCchhH---hHHHHH-HhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHH
Q 007917 442 GWSVGATLGYAQAAKDKRVIACIGDGSFQ---EISTMI-RCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNA 517 (585)
Q Consensus 442 G~~lpaAiGaalA~p~~~vv~v~GDGsf~---eL~ta~-~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a 517 (585)
+.+.++|.|+.++ .+++++++.+=|--. .|.++. .+++|+++|+-.-+.++-...-+.. ...+ -..+-+.
T Consensus 44 e~aa~~aAg~~~~-~~~~~v~~~~sG~gn~~~~l~~a~~~~~~Pvl~i~g~rg~~~~~~~~q~~-~g~~----~~~~l~~ 117 (157)
T TIGR03845 44 EEGVGICAGAYLA-GKKPAILMQSSGLGNSINALASLNKTYGIPLPILASWRGVYKEKIPAQIP-MGRA----TPKLLDT 117 (157)
T ss_pred HHHHHHHHHHHHh-cCCcEEEEeCCcHHHHHHHHHHHHHcCCCCEEEEEeccCCCCCCCccccc-hhhh----hHHHHHH
Confidence 3455667777776 467888888777333 888998 9999999999777665531000000 0000 1122345
Q ss_pred hcCCCCCccEEEecCHHHHHHHHHHhhh--cCCCCeEEEEEE
Q 007917 518 IHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVF 557 (585)
Q Consensus 518 ~G~~~~~~~~~~v~~~~eL~~al~~a~~--~~~~gp~vIeV~ 557 (585)
++. ++.++++++++ .++++|+. .+.++|+.|=|.
T Consensus 118 ~~i-----~~~~i~~~e~~-~~i~~A~~~a~~~~gPv~il~~ 153 (157)
T TIGR03845 118 LGI-----PYTIPREPEEA-KLIEKAISDAYENSRPVAALLD 153 (157)
T ss_pred cCC-----CeEEeCCHHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence 676 68889999999 99999876 234589887553
No 179
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=94.07 E-value=0.65 Score=44.12 Aligned_cols=116 Identities=11% Similarity=0.021 Sum_probs=72.5
Q ss_pred HHhhhhhhhhcC-c-cEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccc--e---------eeccC---
Q 007917 78 GYAADGYARSRG-V-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRI--L---------HHTIG--- 141 (585)
Q Consensus 78 ~~~A~gyar~tg-~-~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~--~---------~~~~~--- 141 (585)
.-+|.|.+.+.. + .||++-=| ++.-.+..|..|...++|+++|.-+......-+... . +....
T Consensus 63 lpaaiGa~la~p~~~vv~i~GDG-~f~m~~~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~ 141 (202)
T cd02006 63 VPAALGVAAADPDRQVVALSGDY-DFQFMIEELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSE 141 (202)
T ss_pred hHHHHhHHhhCCCCeEEEEEeCh-HhhccHHHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCccccccccccccccc
Confidence 346677665553 4 44444333 333345788899999999999998765432111000 0 00000
Q ss_pred -CCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCCC
Q 007917 142 -LPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (585)
Q Consensus 142 -~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (585)
.....|..++.+.+-....++.+++++.+.+++|+.......+|+.|++..|-
T Consensus 142 ~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~~~~~~~~p~liev~i~~ 195 (202)
T cd02006 142 LGGYGVDHVKVAEGLGCKAIRVTKPEELAAAFEQAKKLMAEHRVPVVVEAILER 195 (202)
T ss_pred cCCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHhcccCCCcEEEEEEecc
Confidence 00013567788887777899999999888888888765444799999998764
No 180
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=94.07 E-value=0.099 Score=47.26 Aligned_cols=112 Identities=21% Similarity=0.084 Sum_probs=68.2
Q ss_pred hhHHHhhhhhhhhc-CccEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCcc---cee-eccC----CCCh
Q 007917 75 LNAGYAADGYARSR-GVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNR---ILH-HTIG----LPDF 145 (585)
Q Consensus 75 ~~A~~~A~gyar~t-g~~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~---~~~-~~~~----~~~~ 145 (585)
..+.-+|.|.+.+. ++-|++++..-++...+..|..|...++|+++|.-+......-+.. ..+ .... ....
T Consensus 31 G~~~~~aiGa~~a~p~~~vv~i~GDG~f~~~~~el~ta~~~~~~v~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (153)
T PF02775_consen 31 GYALPAAIGAALARPDRPVVAITGDGSFLMSLQELATAVRYGLPVVIVVLNNGGYGMTGGQQTPFGGGRFSGVDGKTFPN 110 (153)
T ss_dssp TTHHHHHHHHHHHSTTSEEEEEEEHHHHHHHGGGHHHHHHTTSSEEEEEEESSBSHHHHHHHHHTTSTCHHSTBTTTSTT
T ss_pred CCHHHhhhHHHhhcCcceeEEecCCcceeeccchhHHHhhccceEEEEEEeCCcceEeccccccCcCccccccccccccc
Confidence 34566788888875 4533333333344445899999999999999999876543111100 000 0000 0112
Q ss_pred HHHHHHhhhceeEEEEecCc--chhHHHHHHHHHHhhhcCCcEEEEe
Q 007917 146 TQELRCFQAITCSQAVVNNL--GDAHELIDTAISTALKESKPVYISI 190 (585)
Q Consensus 146 ~d~~~~~~~~~k~~~~v~~~--~~~~~~l~~A~~~a~~~~gPV~i~i 190 (585)
.|...+.+.+-....+++++ +++.+.|++|+ ..+||+.|++
T Consensus 111 ~d~~~~a~a~G~~~~~v~~~~~~el~~al~~a~----~~~gp~vIeV 153 (153)
T PF02775_consen 111 PDFAALAEAFGIKGARVTTPDPEELEEALREAL----ESGGPAVIEV 153 (153)
T ss_dssp CGHHHHHHHTTSEEEEESCHSHHHHHHHHHHHH----HSSSEEEEEE
T ss_pred CCHHHHHHHcCCcEEEEccCCHHHHHHHHHHHH----hCCCcEEEEc
Confidence 35677777775457788877 66666666665 6689999986
No 181
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=94.06 E-value=0.31 Score=44.51 Aligned_cols=113 Identities=13% Similarity=0.169 Sum_probs=72.7
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+.+. +++.+|++ |=|... .+.+|...+.|+++|.-+-...... .+
T Consensus 36 i~~v~~rhE~~---A~~mAdgyar~s-g~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g~~~~~~~~----~~--- 104 (162)
T cd07037 36 FRLHVRVDERS---AAFFALGLAKAS-GRPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTADRPPELRG----TG--- 104 (162)
T ss_pred ceEEeccChHH---HHHHHHHHHHhh-CCCEEEEECCchHHHHHhHHHHHHHhcCCCEEEEECCCCHHhcC----CC---
Confidence 34554443332 445677887765 57777666 334433 8889999999999888643322210 11
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHH------HHHHHHHhhh-c--CCCCeEEEEEEc
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDE------LTEAMKTATG-E--QKDSLCFIEVFV 558 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~e------L~~al~~a~~-~--~~~gp~vIeV~v 558 (585)
.+...|-..+.+.+-- ...+++++++ +...+++|+. . ...||++||+..
T Consensus 105 ~~q~~d~~~l~~~vtk-----~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~ 162 (162)
T cd07037 105 ANQTIDQVGLFGDYVR-----WSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLPF 162 (162)
T ss_pred CCcccchhhhccceee-----EEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEeccC
Confidence 1234566777777765 7888888888 7777777765 1 245899999863
No 182
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=93.97 E-value=0.31 Score=54.27 Aligned_cols=103 Identities=17% Similarity=0.251 Sum_probs=75.5
Q ss_pred hHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHh
Q 007917 444 SVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAI 518 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 518 (585)
+.-+|.|.+.+. +++.+|++ |=|... .|..|...+.|+++|.-.-..+... . ..+..+|...+.+.+
T Consensus 65 A~~~A~gyar~t-g~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~ItG~~~~~~~~----~---~~~q~~d~~~l~~~~ 136 (571)
T PRK07710 65 AIHAAEGYARIS-GKPGVVIATSGPGATNVVTGLADAMIDSLPLVVFTGQVATSVIG----S---DAFQEADIMGITMPV 136 (571)
T ss_pred HHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEeccCCccccC----C---CCccccchhhhhhcc
Confidence 556788888765 57777776 566555 8899999999999998655543321 1 112446888888887
Q ss_pred cCCCCCccEEEecCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007917 519 HNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 559 (585)
Q Consensus 519 G~~~~~~~~~~v~~~~eL~~al~~a~~--~-~~~gp~vIeV~v~ 559 (585)
-- +.+++.+++++...+++|+. . ...||+.|++..|
T Consensus 137 tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 175 (571)
T PRK07710 137 TK-----HNYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKD 175 (571)
T ss_pred cc-----eEEecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcChh
Confidence 65 78899999999888888876 2 2359999999976
No 183
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=93.94 E-value=0.48 Score=52.95 Aligned_cols=105 Identities=9% Similarity=0.079 Sum_probs=75.7
Q ss_pred hHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHh
Q 007917 444 SVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAI 518 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 518 (585)
+.-+|-|.+.+..+++-+|++ |=|... .|.+|...+.|+++|.-.-...... . ..+..+|...+.+.+
T Consensus 53 A~~mAdgyaR~t~g~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~G~~~~~~~~----~---~~~q~~D~~~~~~~v 125 (588)
T TIGR01504 53 ASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLH----K---EDFQAVDIAAIAKPV 125 (588)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccC----C---CcccccCHHHHhhhh
Confidence 345677777764356666664 666555 9999999999999998544432210 1 113456888999988
Q ss_pred cCCCCCccEEEecCHHHHHHHHHHhhh-c--CCCCeEEEEEEcCC
Q 007917 519 HNGEGKCWTAKVRSEDELTEAMKTATG-E--QKDSLCFIEVFVHK 560 (585)
Q Consensus 519 G~~~~~~~~~~v~~~~eL~~al~~a~~-~--~~~gp~vIeV~v~~ 560 (585)
-. ...+|.+++++...|++|+. . ...||+.|+|..|-
T Consensus 126 tk-----~~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv 165 (588)
T TIGR01504 126 SK-----MAVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDV 165 (588)
T ss_pred ce-----EEEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcch
Confidence 76 78899999999999999876 1 24589999999874
No 184
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=93.91 E-value=1.7 Score=40.55 Aligned_cols=111 Identities=12% Similarity=-0.029 Sum_probs=65.5
Q ss_pred HhhhhhhhhcC-ccEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeec---cCCCChHHHHHHhhh
Q 007917 79 YAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHT---IGLPDFTQELRCFQA 154 (585)
Q Consensus 79 ~~A~gyar~tg-~~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~ 154 (585)
-+|.|.+.+.. +-|+.++..-++.-.++.+..|...++|+++|.-+.......+. .|.. .......|...+.+.
T Consensus 57 ~~aiGaala~~~~~vv~i~GDG~f~~~~~el~ta~~~~~p~~ivV~nN~~~~~~~~--~~~~~~~~~~~~~~d~~~ia~a 134 (183)
T cd02005 57 PAALGAALAAPDRRVILLVGDGSFQMTVQELSTMIRYGLNPIIFLINNDGYTIERA--IHGPEASYNDIANWNYTKLPEV 134 (183)
T ss_pred HHHHHHHHhCCCCeEEEEECCchhhccHHHHHHHHHhCCCCEEEEEECCCcEEEEE--eccCCcCcccCCCCCHHHHHHH
Confidence 35666665554 43333333334444567788899999999999887655322110 0000 000011345666776
Q ss_pred ce----eEEEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCCC
Q 007917 155 IT----CSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (585)
Q Consensus 155 ~~----k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (585)
+- .+..++.+++++.+.+++|++ +.+||+.|++..|-
T Consensus 135 ~G~~~~~~~~~v~~~~el~~al~~a~~---~~~~p~liev~~~~ 175 (183)
T cd02005 135 FGGGGGGLSFRVKTEGELDEALKDALF---NRDKLSLIEVILPK 175 (183)
T ss_pred hCCCccccEEEecCHHHHHHHHHHHHh---cCCCcEEEEEEcCc
Confidence 64 456778888777666666664 25799999998764
No 185
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=93.86 E-value=1.1 Score=50.45 Aligned_cols=120 Identities=18% Similarity=0.083 Sum_probs=81.3
Q ss_pred CCCeEE-ecCchhhHHHhhhhhhhhcCccEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCC
Q 007917 64 PELNLV-GCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGL 142 (585)
Q Consensus 64 ~~i~~i-~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~ 142 (585)
++ |++ ...-|++++.+|.|+|+..|.-.++.|..+=+.-+...+..+...+.|++++....... .+.+.. +
T Consensus 395 p~-rfi~~GIaEq~mv~~AaGlA~~gG~~p~~~tf~~F~~r~~~~ir~~a~~~lpV~~v~th~g~~-~G~dG~------T 466 (653)
T TIGR00232 395 LG-NYIHYGVREFAMGAIMNGIALHGGFKPYGGTFLMFVDYARPAIRLAALMKLPVIYVYTHDSIG-VGEDGP------T 466 (653)
T ss_pred CC-CeEeecccHHHHHHHHHHHHHcCCCeEEEEEhHHHHHHHHHHHHHHHhcCCCEEEEEeCCccC-CCCCCc------c
Confidence 44 545 58999999999999999888744446666655566778888888999998887543333 222222 2
Q ss_pred CChHHHHHHhhhceeE-EEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCCC
Q 007917 143 PDFTQELRCFQAITCS-QAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (585)
Q Consensus 143 ~~~~d~~~~~~~~~k~-~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (585)
||...+..+++.+.-. .++..++.++..+++.|++ ...||++|.++..-
T Consensus 467 Hq~iedia~lr~iPn~~v~~PaD~~E~~~~~~~a~~---~~~gP~~irl~r~~ 516 (653)
T TIGR00232 467 HQPIEQLASLRAIPNLSVWRPCDGNETAAAWKYALE---SQDGPTALILSRQN 516 (653)
T ss_pred cCCHHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh---cCCCcEEEEEcCCc
Confidence 4456678888876442 3445666666665555542 33799999999764
No 186
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=93.86 E-value=0.39 Score=53.50 Aligned_cols=116 Identities=8% Similarity=0.025 Sum_probs=78.0
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+.+. +++.+|++ |=|... .|.+|...++|+++|.-.-...... . ...
T Consensus 48 i~~i~~rhE~~---A~~mAdgyar~t-g~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~--~---~~~ 118 (569)
T PRK09259 48 IRYIGFRHEQS---AGNAAAAAGFLT-QKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSEREIVD--L---QQG 118 (569)
T ss_pred CCEEeeCCHHH---HHHHHHHHHHHh-CCCEEEEEcCCccHHHHHHHHHHHHhcCCCEEEEEccCCccccc--c---cCC
Confidence 44554444332 345677777764 56666665 555554 9999999999999998754321100 0 011
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~-~~~gp~vIeV~v~ 559 (585)
.+..+|...+++.+-- ..++|++++++...+++|+. . ...||+.|+++.|
T Consensus 119 ~~q~~d~~~~~~~~tk-----~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 171 (569)
T PRK09259 119 DYEELDQLNAAKPFCK-----AAFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAK 171 (569)
T ss_pred Cccccchhhhhhhhee-----eeEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHH
Confidence 2345688888888876 78899999999998888876 1 2468999999976
No 187
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=93.80 E-value=0.36 Score=44.54 Aligned_cols=111 Identities=19% Similarity=0.116 Sum_probs=64.6
Q ss_pred HHHhhhhhhhhcC-c-cEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCccCCCcc--cee---eccC-CCChHH
Q 007917 77 AGYAADGYARSRG-V-GACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTNR--ILH---HTIG-LPDFTQ 147 (585)
Q Consensus 77 A~~~A~gyar~tg-~-~v~~~t~GpG~~n-~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~--~~~---~~~~-~~~~~d 147 (585)
+.-+|.|.+.+.. + .+|++ |=|... ....+..|...++|+++|.-+.......+.. ..+ .... .....|
T Consensus 53 ~lp~AiGa~la~~~~~vv~i~--GDG~f~~~~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d 130 (172)
T cd02004 53 GLGYAIAAALARPDKRVVLVE--GDGAFGFSGMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLGLPVTTLLPDTR 130 (172)
T ss_pred hHHHHHHHHHhCCCCeEEEEE--cchhhcCCHHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCCCceeccCCCCC
Confidence 4446777666654 3 44443 444444 4788899999999988888765432111100 000 0000 001235
Q ss_pred HHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCC
Q 007917 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (585)
Q Consensus 148 ~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~d 193 (585)
...+.+.+--...++.+++++.+. ++.+...+||+.|++..|
T Consensus 131 ~~~la~a~G~~~~~v~~~~el~~a----l~~a~~~~~p~liev~i~ 172 (172)
T cd02004 131 YDLVAEAFGGKGELVTTPEELKPA----LKRALASGKPALINVIID 172 (172)
T ss_pred HHHHHHHCCCeEEEECCHHHHHHH----HHHHHHcCCCEEEEEEcC
Confidence 567777776667788886665554 444545579999998764
No 188
>PRK07586 hypothetical protein; Validated
Probab=93.76 E-value=0.34 Score=53.23 Aligned_cols=115 Identities=16% Similarity=0.243 Sum_probs=77.9
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++..+.-. .+.-+|-|.+.+. +++.+|++ |=|... .+.+|...+.|+++|.-.-...... ..
T Consensus 40 i~~i~~rhE~---~A~~mAdgyar~t-g~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~i~G~~~~~~~~-------~~ 108 (514)
T PRK07586 40 MRCVLGLFEG---VATGAADGYARMA-GKPAATLLHLGPGLANGLANLHNARRARTPIVNIVGDHATYHRK-------YD 108 (514)
T ss_pred CeEEEeccHH---HHHHHHHHHHHHH-CCCEEEEecccHHHHHHHHHHHHHHhcCCCEEEEecCCchhccC-------CC
Confidence 3455444332 2445677777764 56666654 555444 8888999999999988654332220 11
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--cC-CCCeEEEEEEcCC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQ-KDSLCFIEVFVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~~-~~gp~vIeV~v~~ 560 (585)
.+...|...+++.+-- +..+|++++++...+++|+. .. ..||+.|++..|-
T Consensus 109 ~~q~~d~~~~~~~vtk-----~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv 162 (514)
T PRK07586 109 APLTSDIEALARPVSG-----WVRRSESAADVAADAAAAVAAARGAPGQVATLILPADV 162 (514)
T ss_pred cccccchhhhhccccc-----eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccch
Confidence 1234688888888875 78899999999998888876 22 3689999999874
No 189
>PRK12754 transketolase; Reviewed
Probab=93.75 E-value=1.1 Score=50.31 Aligned_cols=119 Identities=13% Similarity=0.015 Sum_probs=83.6
Q ss_pred CCCe-EEecCchhhHHHhhhhhhhhcCccEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCC
Q 007917 64 PELN-LVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGL 142 (585)
Q Consensus 64 ~~i~-~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~ 142 (585)
++ | +-...-|++++.+|.|.|.-.|.-.+..|..+=+.-+.+.|-.+...+.|++++........ +.+.. +
T Consensus 401 p~-r~i~~GIaE~~Mv~iaaGlA~~~G~~Pf~~tf~~F~~r~~~qir~~a~~~l~V~~v~th~gi~~-G~DG~------T 472 (663)
T PRK12754 401 AG-NYIHYGVREFGMTAIANGIALHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGL-GEDGP------T 472 (663)
T ss_pred CC-CeEeeccchhhHHHHHhhHHhcCCCeEEEEeeHHHHHHHHHHHHHHHHcCCCeEEEEECCcccc-CCCCC------C
Confidence 45 5 55778999999999999998887555566677667788999888889999988876554442 33222 3
Q ss_pred CChHHHHHHhhhceeEE-EEecCcchhHHHHHHHHHHhhhc-CCcEEEEecCCC
Q 007917 143 PDFTQELRCFQAITCSQ-AVVNNLGDAHELIDTAISTALKE-SKPVYISISCNL 194 (585)
Q Consensus 143 ~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~l~~A~~~a~~~-~gPV~i~iP~dv 194 (585)
||...++.+++.+.-.. .+..+..++ ..+++.|... .||+||.++..-
T Consensus 473 Hq~iEdla~lR~iPn~~V~~PaD~~E~----~~~~~~a~~~~~gP~yirl~R~~ 522 (663)
T PRK12754 473 HQPVEQVASLRVTPNMSTWRPCDQVES----AVAWKYGVERQDGPTALILSRQN 522 (663)
T ss_pred cccHHHHHHHhcCCCcEEecCCCHHHH----HHHHHHHHhCCCCCEEEEeCCCC
Confidence 45667889999876433 334454444 4455555554 699999999753
No 190
>PRK08322 acetolactate synthase; Reviewed
Probab=93.73 E-value=0.37 Score=53.46 Aligned_cols=103 Identities=15% Similarity=0.207 Sum_probs=73.8
Q ss_pred hHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHh
Q 007917 444 SVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAI 518 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 518 (585)
+.-+|.|.+.+. +++.+|++ |=|... .+..|...++|+++|.-+=....+. .+ .+...|...+.+.+
T Consensus 50 A~~~A~gyar~t-g~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~g~~~~~~~~----~~---~~q~~d~~~~~~~~ 121 (547)
T PRK08322 50 AAFMAATYGRLT-GKAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAITGQKPIKRSK----QG---SFQIVDVVAMMAPL 121 (547)
T ss_pred HHHHHHHHHHhh-CCCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEeccccccccC----CC---ccccccHHHHhhhh
Confidence 446788888875 56766665 555555 8899999999999988643322221 11 12345788888887
Q ss_pred cCCCCCccEEEecCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007917 519 HNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 559 (585)
Q Consensus 519 G~~~~~~~~~~v~~~~eL~~al~~a~~--~-~~~gp~vIeV~v~ 559 (585)
-- ...+|++++++...+++|+. . ...||+.|+|..|
T Consensus 122 tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 160 (547)
T PRK08322 122 TK-----WTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPED 160 (547)
T ss_pred ee-----EEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence 65 78899999999999988876 2 2358999999977
No 191
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=93.69 E-value=0.42 Score=53.10 Aligned_cols=116 Identities=8% Similarity=0.024 Sum_probs=78.7
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+.+. +++-+|++ |=|... .+.+|...+.|+++|.-.-...... ... .
T Consensus 41 i~~i~~rhE~~---A~~mAdgyar~t-g~~gv~~~t~GPG~~N~~~gia~A~~~~~Pvl~I~G~~~~~~~~--~~~---~ 111 (554)
T TIGR03254 41 MRYIGFRHEQS---AGYAAAAAGFLT-QKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGSSERHIVD--LQQ---G 111 (554)
T ss_pred CcEEEeCCHHH---HHHHHHHHHHHh-CCCEEEEEccCccHHhHHHHHHHHHhcCCCEEEEEccCCccccc--cCC---C
Confidence 34554444332 445677777765 46666554 555555 8899999999999998755422110 001 1
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh---cCCCCeEEEEEEcC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG---EQKDSLCFIEVFVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~---~~~~gp~vIeV~v~ 559 (585)
.+..+|...+++.+-- ...+|++++++...|++|+. ....||+.|++..|
T Consensus 112 ~~q~~d~~~~~~~vtk-----~~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~D 164 (554)
T TIGR03254 112 DYEEMDQLAAAKPFAK-----AAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAA 164 (554)
T ss_pred CcchhhHHHHhhhhhe-----eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHH
Confidence 2345688899998886 88999999999988888875 22458899999977
No 192
>PRK08266 hypothetical protein; Provisional
Probab=93.69 E-value=0.98 Score=50.02 Aligned_cols=117 Identities=12% Similarity=0.158 Sum_probs=78.9
Q ss_pred CCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCC
Q 007917 429 NCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPY 503 (585)
Q Consensus 429 ~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~ 503 (585)
..+++....-.+ +.-+|.|.+.+. +++.+|++ |=|... .+..|...+.|+++|.-.=..+... .+..
T Consensus 43 ~i~~v~~~hE~~---A~~~A~gyar~t-g~~~v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~~~----~~~~ 114 (542)
T PRK08266 43 RIRVIHTRHEQA---AGYMAFGYARST-GRPGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLTGQIPSALIG----KGRG 114 (542)
T ss_pred CCeEEeeccHHH---HHHHHHHHHHHh-CCCeEEEECCCCcHHHHHHHHHHHHhhCCCEEEEecCCChhhcc----CCCC
Confidence 344555443333 345888888875 46767665 666666 8899999999999887532221110 1100
Q ss_pred CCCCC-CCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007917 504 NVIKN-WDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 559 (585)
Q Consensus 504 ~~~~~-~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~-~~~gp~vIeV~v~ 559 (585)
.+.. +|...+.+.+-- +..++++++++...+++|+. . ...||+.|+|..|
T Consensus 115 -~~~~~~d~~~~~~~~tk-----~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 168 (542)
T PRK08266 115 -HLHEMPDQLATLRSFTK-----WAERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWD 168 (542)
T ss_pred -cceecccHhhHHhhhcc-----eEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHh
Confidence 1122 478888888876 78899999999988888876 1 2468999999987
No 193
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.66 E-value=0.68 Score=51.66 Aligned_cols=115 Identities=16% Similarity=0.183 Sum_probs=81.6
Q ss_pred CCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCC
Q 007917 429 NCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPY 503 (585)
Q Consensus 429 ~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~ 503 (585)
+.+++....-.+ +.-+|-|.+.+. +++.+|++ |=|... .+.+|...+.|+++|.-.-...... .
T Consensus 42 ~i~~i~~rhE~~---A~~mAdgyar~t-g~~gv~~vt~GPG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~----~--- 110 (574)
T PRK06466 42 KVEHILVRHEQA---ATHMADGYARAT-GKTGVVLVTSGPGATNAITGIATAYMDSIPMVVLSGQVPSTLIG----E--- 110 (574)
T ss_pred CceEEEeCcHHH---HHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCCccccC----C---
Confidence 345665554443 335788888765 56777776 666666 9999999999999998654432210 1
Q ss_pred CCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007917 504 NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 559 (585)
Q Consensus 504 ~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~-~~~gp~vIeV~v~ 559 (585)
..+..+|...+++.+-- ...+|.+++++...+++|+. . ...||+.|+|..|
T Consensus 111 ~~~q~~d~~~l~~~itk-----~s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06466 111 DAFQETDMVGISRPIVK-----HSFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKD 164 (574)
T ss_pred Ccccccchhhhhhccce-----eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 11344688888888876 78889999999999988876 2 2358999999988
No 194
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=93.52 E-value=0.36 Score=54.99 Aligned_cols=91 Identities=18% Similarity=0.187 Sum_probs=60.8
Q ss_pred EEEEEcCchhH------h-HHHHHHhCCC---eEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEE
Q 007917 460 VIACIGDGSFQ------E-ISTMIRCGQR---SIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAK 529 (585)
Q Consensus 460 vv~v~GDGsf~------e-L~ta~~~~lp---v~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~ 529 (585)
.|++-||.+|- | |..+.-.+++ .+.||+||. +|+.- .+-..-.......+|+++++ ..+.
T Consensus 650 pi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNq-iGftT----~p~~~Rss~y~td~ak~~~~-----Pifh 719 (1228)
T PRK12270 650 PILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQ-VGFTT----APESSRSSEYATDVAKMIQA-----PIFH 719 (1228)
T ss_pred EEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecC-ccccc----CccccccchhhHHHHhhcCC-----CEEe
Confidence 56788999986 3 3334445666 777777776 33310 00000123346778889998 7888
Q ss_pred ec--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007917 530 VR--SEDELTEAMKTATG--EQKDSLCFIEVFVHK 560 (585)
Q Consensus 530 v~--~~~eL~~al~~a~~--~~~~gp~vIeV~v~~ 560 (585)
|+ +++....+.+-|++ ...++++|||+.+-+
T Consensus 720 VNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYR 754 (1228)
T PRK12270 720 VNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYR 754 (1228)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEe
Confidence 84 78888888888876 346899999999854
No 195
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=93.47 E-value=0.55 Score=43.61 Aligned_cols=118 Identities=23% Similarity=0.229 Sum_probs=69.2
Q ss_pred eEE-ecCchhhHHHhhhhhhhhcC-ccEEEEeCCcchH----HHHHHHH-HhhhcCCcEEEEeCCCCCccCCCccceeec
Q 007917 67 NLV-GCCNELNAGYAADGYARSRG-VGACVVTFTVGGL----SVLNAIA-GAYSENLPVICIVGGPNSNDYGTNRILHHT 139 (585)
Q Consensus 67 ~~i-~~~~E~~A~~~A~gyar~tg-~~v~~~t~GpG~~----n~~~gl~-~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~ 139 (585)
|++ ....|++.+.+|.|+|...+ +-++..+.++=+. =....+. .....+.|+.+++. .+.. .+.+..-||
T Consensus 49 r~i~~gIaE~~~vg~a~GlA~~G~~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~v~~~-~g~~-~~~~G~tH~- 125 (178)
T PF02779_consen 49 RFINTGIAEQNMVGMAAGLALAGGLRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVPVGTR-AGLG-YGGDGGTHH- 125 (178)
T ss_dssp TEEE--S-HHHHHHHHHHHHHHSSSEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EEEEEE-ESGG-GSTTGTTTS-
T ss_pred eEEecCcchhhccceeeeeeecccccceeEeeccccccccchhhhhhhhhhhhcccceecceee-cCcc-ccccccccc-
Confidence 455 67899999999999998886 6555556665444 2344554 46667778774333 2222 122222232
Q ss_pred cCCCChHHHHHHhhhceeEEE-EecCcchhHHHHHHHHHHhhhcCCcEEEEecCCC
Q 007917 140 IGLPDFTQELRCFQAITCSQA-VVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (585)
Q Consensus 140 ~~~~~~~d~~~~~~~~~k~~~-~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (585)
..+...+++.+..+.. ...++.++..+++.|++. ..++||||..|...
T Consensus 126 -----s~~d~~~~~~iPg~~v~~Psd~~e~~~~l~~a~~~--~~~~P~~ir~~r~~ 174 (178)
T PF02779_consen 126 -----SIEDEAILRSIPGMKVVVPSDPAEAKGLLRAAIRR--ESDGPVYIREPRGL 174 (178)
T ss_dssp -----SSSHHHHHHTSTTEEEEE-SSHHHHHHHHHHHHHS--SSSSEEEEEEESSE
T ss_pred -----ccccccccccccccccccCCCHHHHHHHHHHHHHh--CCCCeEEEEeeHHh
Confidence 2344788888766553 445666655555555542 14799999999765
No 196
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=93.43 E-value=0.46 Score=53.18 Aligned_cols=114 Identities=11% Similarity=0.156 Sum_probs=77.3
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+.+. +++.+|++ |=|... .+.+|.+.+.|+++|.-.=..... ..+
T Consensus 44 i~~i~~rhE~~---A~~~Adgyar~t-g~~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~g~~~~~~~----~~~--- 112 (588)
T PRK07525 44 IRFIDVAHEQN---AGHMADGYTRVT-GRMGMVIGQNGPGITNFVTAVATAYWAHTPVVLVTPQAGTKTI----GQG--- 112 (588)
T ss_pred CCEEEecCHHH---HHHHHHHHHHHh-CCCEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEeCCCCcccC----CCC---
Confidence 44554443332 346778887765 45666666 666665 899999999999998832221111 011
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--cCCCCeEEEEEEcC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~~~~gp~vIeV~v~ 559 (585)
.+...|...+++.+-- ...++++++++...|++|+. ....||+.|+|..|
T Consensus 113 ~~q~~d~~~l~~~~tk-----~~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~D 164 (588)
T PRK07525 113 GFQEAEQMPMFEDMTK-----YQEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRD 164 (588)
T ss_pred CCcccchhhhhhhhee-----EEEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 1234578888888865 78889999999888888876 33569999999977
No 197
>PTZ00089 transketolase; Provisional
Probab=93.39 E-value=0.68 Score=52.32 Aligned_cols=116 Identities=17% Similarity=0.055 Sum_probs=78.9
Q ss_pred EEecCchhhHHHhhhhhhhhcCccEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHH
Q 007917 68 LVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ 147 (585)
Q Consensus 68 ~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d 147 (585)
+-...-|++++.+|.|.|.-.|.-.++.|..+=+.=+...|..+...+.||+++....... .+.+.. +||...
T Consensus 406 i~~GIaEq~mv~~AaGlA~~~G~~P~~~tf~~Fl~Ra~dqir~~al~~lpV~~v~thdg~~-~g~DG~------THq~ie 478 (661)
T PTZ00089 406 IRFGVREHAMCAIMNGIAAHGGFIPFGATFLNFYGYALGAVRLAALSHHPVIYVATHDSIG-LGEDGP------THQPVE 478 (661)
T ss_pred eeeeecHHHHHHHHHHHHHcCCCeEEEEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCcee-cCCCCC------CcccHH
Confidence 4467889999999999999777644445566666678888999999999999986433222 222211 345667
Q ss_pred HHHHhhhceeEE-EEecCcchhHHHHHHHHHHhhh-cCCcEEEEecCCC
Q 007917 148 ELRCFQAITCSQ-AVVNNLGDAHELIDTAISTALK-ESKPVYISISCNL 194 (585)
Q Consensus 148 ~~~~~~~~~k~~-~~v~~~~~~~~~l~~A~~~a~~-~~gPV~i~iP~dv 194 (585)
+..+++.+.-.. .+..++.++. .+++.|.. ..||++|.+|..-
T Consensus 479 dia~lR~iPn~~V~~PaD~~E~~----~~l~~al~~~~gP~~irl~R~~ 523 (661)
T PTZ00089 479 TLALLRATPNLLVIRPADGTETS----GAYALALANAKTPTILCLSRQN 523 (661)
T ss_pred HHHHHhcCCCcEEEecCCHHHHH----HHHHHHHHcCCCCEEEEecCCC
Confidence 789999875432 3344554444 44455543 3699999999764
No 198
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.35 E-value=0.49 Score=52.76 Aligned_cols=116 Identities=12% Similarity=0.127 Sum_probs=80.4
Q ss_pred CCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCC
Q 007917 429 NCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPY 503 (585)
Q Consensus 429 ~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~ 503 (585)
+.+++....-.+ +.-+|-|.+.+. +++-+|++ |=|... .+.+|...+.|+++|.-.=...... .+
T Consensus 42 ~i~~i~~rhE~~---A~~mAdgYar~t-g~~gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i~G~~~~~~~~----~~-- 111 (574)
T PRK07979 42 GIDHVLVRHEQA---AVHMADGLARAT-GEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQVATSLIG----YD-- 111 (574)
T ss_pred CceEEEeCcHHH---HHHHHHHHHHHh-CCceEEEECCCccHhhhHHHHHHHhhcCCCEEEEECCCChhccC----CC--
Confidence 345555544432 445788888765 45666655 555555 8889999999999988653322210 11
Q ss_pred CCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--c-CCCCeEEEEEEcCC
Q 007917 504 NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVHK 560 (585)
Q Consensus 504 ~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~-~~~gp~vIeV~v~~ 560 (585)
.+...|...+.+.+-. ...+|++++++...|++|+. . ...||+.|+|..|-
T Consensus 112 -~~q~~d~~~l~~~~tk-----~~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv 165 (574)
T PRK07979 112 -AFQECDMVGISRPVVK-----HSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDI 165 (574)
T ss_pred -CCceecHHHHhhcccc-----eEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence 1344688888998876 78899999999999999875 2 23589999998874
No 199
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=93.32 E-value=0.61 Score=52.50 Aligned_cols=114 Identities=16% Similarity=0.107 Sum_probs=79.0
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++..+.-. .+.-+|-|.+... +++.+|++ |=|... .|.+|...+.|+++|.-+=....+. .+.
T Consensus 61 i~~i~~rhE~---~Aa~aA~gyar~t-gk~gv~~~t~GPG~~n~l~gl~~A~~d~~Pvl~i~G~~~~~~~~----~~~-- 130 (616)
T PRK07418 61 LKHILVRHEQ---GAAHAADGYARAT-GKVGVCFGTSGPGATNLVTGIATAQMDSVPMVVITGQVPRPAIG----TDA-- 130 (616)
T ss_pred ceEEEeccHH---HHHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCCccccC----CCC--
Confidence 4455544433 2446677877764 56777776 666666 9999999999999998654322221 111
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~-~~~gp~vIeV~v~ 559 (585)
+...|...+.+.+-- +..+|++++++...+++|+. . ...||++|+|..|
T Consensus 131 -~Qe~d~~~~~~~vtk-----~~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~D 182 (616)
T PRK07418 131 -FQETDIFGITLPIVK-----HSYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKD 182 (616)
T ss_pred -cccccHHHHhhhcce-----eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchh
Confidence 234577778887765 77889999999999988876 2 2349999999875
No 200
>PRK08617 acetolactate synthase; Reviewed
Probab=93.28 E-value=0.44 Score=52.91 Aligned_cols=114 Identities=14% Similarity=0.123 Sum_probs=78.9
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+.+. +++.+|++ |=|... .+.+|...+.|+++|.-.-....+. .+
T Consensus 43 i~~i~~~hE~~---A~~~A~gyar~t-g~~gv~~vt~GpG~~N~l~gl~~A~~~~~PvlvisG~~~~~~~~----~~--- 111 (552)
T PRK08617 43 PELIVTRHEQN---AAFMAAAIGRLT-GKPGVVLVTSGPGVSNLATGLVTATAEGDPVVAIGGQVKRADRL----KR--- 111 (552)
T ss_pred CCEEEeccHHH---HHHHHHhHhhhc-CCCEEEEECCCCcHhHhHHHHHHHhhcCCCEEEEecCCcccccC----CC---
Confidence 44554443332 345677777764 56777776 666666 8899999999999988643322221 11
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~-~~~gp~vIeV~v~ 559 (585)
.+..+|-..+++.+-- +.+++++++++...+++|+. . ...||+.|+|..|
T Consensus 112 ~~q~~d~~~l~~~~tk-----~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 164 (552)
T PRK08617 112 THQSMDNVALFRPITK-----YSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQD 164 (552)
T ss_pred Cccccchhhhhhhhcc-----eEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhh
Confidence 1244677888888876 88999999999988888876 2 2358999999976
No 201
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=93.26 E-value=1.2 Score=49.59 Aligned_cols=114 Identities=17% Similarity=0.193 Sum_probs=79.0
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+... +++.++++ |=|... .+..|...++|+++|.-.=...... .+
T Consensus 40 i~~i~~~hE~~---A~~~Adgyar~t-g~~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~g~~~~~~~~----~~--- 108 (558)
T TIGR00118 40 IEHILVRHEQG---AAHAADGYARAS-GKVGVVLVTSGPGATNLVTGIATAYMDSIPMVVFTGQVPTSLIG----SD--- 108 (558)
T ss_pred ceEEEeCcHHH---HHHHHHHHHHHh-CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEecCCCccccC----CC---
Confidence 44555444333 445688888765 56777666 566555 8899999999999998643322110 11
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--cC-CCCeEEEEEEcC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQ-KDSLCFIEVFVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~~-~~gp~vIeV~v~ 559 (585)
.+...|...+++.+-. ...++++++++...+++|+. .. ..||+.|+|..|
T Consensus 109 ~~q~~d~~~~~~~~tk-----~~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~d 161 (558)
T TIGR00118 109 AFQEADILGITMPITK-----HSFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKD 161 (558)
T ss_pred CCcccChhhhhcCccc-----eeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChh
Confidence 1234577888888876 88899999999998888875 22 358999999977
No 202
>PRK12753 transketolase; Reviewed
Probab=93.20 E-value=1.9 Score=48.80 Aligned_cols=117 Identities=16% Similarity=0.037 Sum_probs=81.9
Q ss_pred e-EEecCchhhHHHhhhhhhhhcCccEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCCh
Q 007917 67 N-LVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDF 145 (585)
Q Consensus 67 ~-~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~ 145 (585)
| +-...-|++++.+|.|.|.-.|.-.++.|..+=+.-+...|..+...+.||+++........ +.+.. +||.
T Consensus 403 r~i~~GIaEq~mv~~aaGlA~~~G~~P~~~tf~~F~~r~~~qir~~a~~~l~V~~v~thdg~~~-G~DG~------THq~ 475 (663)
T PRK12753 403 NYIHYGVREFGMTAIANGIAHHGGFVPYTATFLMFVEYARNAARMAALMKARQIMVYTHDSIGL-GEDGP------THQP 475 (663)
T ss_pred CEEEeeecHHHHHHHHHHHHHhCCCeEEEEehHHHHHHHHHHHHHHHhcCCCeEEEEeCCCccc-CCCCc------cccc
Confidence 5 44778999999999999997787555566777666788888888899999999865544432 33222 3455
Q ss_pred HHHHHHhhhceeEE-EEecCcchhHHHHHHHHHHhhh-cCCcEEEEecCCC
Q 007917 146 TQELRCFQAITCSQ-AVVNNLGDAHELIDTAISTALK-ESKPVYISISCNL 194 (585)
Q Consensus 146 ~d~~~~~~~~~k~~-~~v~~~~~~~~~l~~A~~~a~~-~~gPV~i~iP~dv 194 (585)
..+..+++.+.-.. .+..+..++ ..+++.|.. ..||+||.++..-
T Consensus 476 iedla~lR~iPn~~v~~PaD~~E~----~~~~~~al~~~~gP~~irl~R~~ 522 (663)
T PRK12753 476 VEQLASLRLTPNFSTWRPCDQVEA----AVAWKLAIERHNGPTALILSRQN 522 (663)
T ss_pred HHHHHHHhcCCCCEEEccCCHHHH----HHHHHHHHhcCCCCEEEEecCCC
Confidence 67789999876433 334454444 455555555 4799999999764
No 203
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=93.18 E-value=0.57 Score=52.23 Aligned_cols=115 Identities=14% Similarity=0.122 Sum_probs=79.7
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+... +++.+|++ |=|... .+.+|...+.|+++|.-.-...... . .
T Consensus 44 i~~i~~rhE~~---A~~~Adgyar~t-g~~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~G~~~~~~~~----~---~ 112 (572)
T PRK06456 44 LRHVLMRHEQA---AAHAADGYARAS-GVPGVCTATSGPGTTNLVTGLITAYWDSSPVIAITGQVPRSVMG----K---M 112 (572)
T ss_pred CeEEEeCcHHH---HHHHHHHHHHhh-CCCEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEecCCCccccC----C---C
Confidence 34554443332 456788888764 57777764 666666 8899999999999987543322110 1 1
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--c-CCCCeEEEEEEcCC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~-~~~gp~vIeV~v~~ 560 (585)
.+...|...+++.+-- ...++++++++...+++|+. . ...||+.|+++.|-
T Consensus 113 ~~q~~d~~~i~~~~tk-----~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 166 (572)
T PRK06456 113 AFQEADAMGVFENVTK-----YVIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDI 166 (572)
T ss_pred Cccccchhhhhhccce-----eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecChhH
Confidence 1344678888888876 78889999999888888875 2 24599999998763
No 204
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=93.18 E-value=0.56 Score=52.21 Aligned_cols=115 Identities=15% Similarity=0.158 Sum_probs=79.9
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+... +++.+|++ |=|... .|.+|...+.|+++|.-.-...... . .
T Consensus 53 i~~i~~rhE~~---A~~mAdgyar~t-g~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~G~~~~~~~~----~---~ 121 (570)
T PRK06725 53 LKHILTRHEQA---AIHAAEGYARAS-GKVGVVFATSGPGATNLVTGLADAYMDSIPLVVITGQVATPLIG----K---D 121 (570)
T ss_pred CcEEEecCHHH---HHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHhhcCcCEEEEecCCCccccc----C---C
Confidence 44554443332 446788888765 46666654 666555 8899999999999998644432210 1 1
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--c-CCCCeEEEEEEcCC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~-~~~gp~vIeV~v~~ 560 (585)
.+...|...+++.+-- ...+|.+++++...|++|+. . ...||+.|+|..|-
T Consensus 122 ~~q~~d~~~l~~~itk-----~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 175 (570)
T PRK06725 122 GFQEADVVGITVPVTK-----HNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDV 175 (570)
T ss_pred CCcccchhhhhhccce-----eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccch
Confidence 1344688889998876 78899999999999999876 1 23699999999773
No 205
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=93.15 E-value=0.67 Score=51.81 Aligned_cols=103 Identities=18% Similarity=0.234 Sum_probs=73.7
Q ss_pred hHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHh
Q 007917 444 SVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAI 518 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 518 (585)
+..+|-|.+.+. +++.++++ |=|... .+.+|...+.|+++|.-.-..... .. ..+..+|...+++.+
T Consensus 50 A~~~Adgyar~t-g~~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~G~~~~~~~----~~---~~~q~~d~~~l~~~~ 121 (586)
T PRK06276 50 AAHAADGYARAS-GKVGVCVATSGPGATNLVTGIATAYADSSPVIALTGQVPTKLI----GN---DAFQEIDALGIFMPI 121 (586)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCCcccc----CC---CCCccccHhhHHhhh
Confidence 556788888765 46766665 555555 888999999999998743222111 01 123346888899988
Q ss_pred cCCCCCccEEEecCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007917 519 HNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 559 (585)
Q Consensus 519 G~~~~~~~~~~v~~~~eL~~al~~a~~--~-~~~gp~vIeV~v~ 559 (585)
-. ..+++++++++...+++|+. . ...||+.|+|..|
T Consensus 122 tk-----~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~D 160 (586)
T PRK06276 122 TK-----HNFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKD 160 (586)
T ss_pred cc-----eEEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChh
Confidence 76 78899999999988888876 1 2358999999976
No 206
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=93.14 E-value=2.3 Score=39.31 Aligned_cols=124 Identities=15% Similarity=0.101 Sum_probs=72.3
Q ss_pred CeEEecCchh---hHHHhhhhhhhhcCccEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCcc-------c
Q 007917 66 LNLVGCCNEL---NAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNR-------I 135 (585)
Q Consensus 66 i~~i~~~~E~---~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~-------~ 135 (585)
-+++..+.=. .+.-+|.|.+.+..+-|+.++..-++.-.+..|..|...++|+++|.-+......-+.. .
T Consensus 42 ~~~~~~~g~g~mG~~l~~aiGa~la~~~~Vv~i~GDGsf~m~~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~ 121 (175)
T cd02009 42 VRVFANRGASGIDGTLSTALGIALATDKPTVLLTGDLSFLHDLNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDE 121 (175)
T ss_pred ceEEecCCccchhhHHHHHHHHHhcCCCCEEEEEehHHHHHhHHHHHhccccCCCeEEEEEECCCCchheeccCCcccch
Confidence 3555443322 34457778776665544444333334444789999999999999988876543211100 0
Q ss_pred eeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCC
Q 007917 136 LHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (585)
Q Consensus 136 ~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~d 193 (585)
...........|..++.+.+-....++++++++...+++|++ ..+|..|++..|
T Consensus 122 ~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~~----~~~p~lIev~v~ 175 (175)
T cd02009 122 FERLFGTPQGLDFEHLAKAYGLEYRRVSSLDELEQALESALA----QDGPHVIEVKTD 175 (175)
T ss_pred hhhhhcCCCCCCHHHHHHHcCCCeeeCCCHHHHHHHHHHHHh----CCCCEEEEEeCC
Confidence 000000000134566777765556788888777777776653 479999999765
No 207
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=93.14 E-value=0.53 Score=52.17 Aligned_cols=114 Identities=13% Similarity=0.045 Sum_probs=77.6
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+.+. +++.+|++ |=|... .+.+|...+.|+++|.-.-....+ ..+.
T Consensus 40 i~~v~~~hE~~---A~~mAdgyar~t-gkpgv~~~t~GPG~~N~l~~l~~A~~~~~Pvl~i~G~~~~~~~----~~~~-- 109 (549)
T PRK06457 40 VKYVQVRHEEG---AALAASVEAKIT-GKPSACMGTSGPGSIHLLNGLYDAKMDHAPVIALTGQVESDMI----GHDY-- 109 (549)
T ss_pred CeEEEeCcHHH---HHHHHHHHHHHh-CCCeEEEeCCCCchhhhHHHHHHHHhcCCCEEEEecCCCcccc----CCCc--
Confidence 44554444333 335678887765 56777765 555555 899999999999999865332211 0111
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--cCCCCeEEEEEEcC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~~~~gp~vIeV~v~ 559 (585)
+..+|...+.+.+-- ...++++++++...+++|+. ....||+.|+++.|
T Consensus 110 -~q~~d~~~l~~~vtk-----~~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~D 160 (549)
T PRK06457 110 -FQEVNLTKLFDDVAV-----FNQILINPENAEYIIRRAIREAISKRGVAHINLPVD 160 (549)
T ss_pred -ccccchhhhhcccee-----EEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHh
Confidence 234577777777765 78889999999888888875 23469999999977
No 208
>PRK11269 glyoxylate carboligase; Provisional
Probab=93.13 E-value=0.55 Score=52.60 Aligned_cols=115 Identities=9% Similarity=0.094 Sum_probs=80.2
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+.+..+++.+|++ |=|... .+.+|...+.|+++|.-+-...... .+.
T Consensus 43 i~~v~~rhE~~---A~~mAdGYar~t~g~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~----~~~-- 113 (591)
T PRK11269 43 IRHILARHVEG---ASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQAPRARLH----KED-- 113 (591)
T ss_pred CcEEeeCCHHH---HHHHHHHHHHHcCCCcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccC----CCc--
Confidence 44555444332 446788888765256777766 565555 8899999999999998654433221 111
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh-c--CCCCeEEEEEEcC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG-E--QKDSLCFIEVFVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~-~--~~~gp~vIeV~v~ 559 (585)
+..+|...+++.+-- ...+|.+++++...+++|+. . ...||+.|+|+.|
T Consensus 114 -~q~~d~~~l~~~itk-----~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 165 (591)
T PRK11269 114 -FQAVDIESIAKPVTK-----WAVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFD 165 (591)
T ss_pred -ccccChhhHhhccee-----EEEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChh
Confidence 244688888888765 78889999999998888876 2 2358999999977
No 209
>PLN02790 transketolase
Probab=93.04 E-value=2.2 Score=48.18 Aligned_cols=118 Identities=17% Similarity=0.144 Sum_probs=79.1
Q ss_pred CCCe-EEecCchhhHHHhhhhhhhhc-Cc-cEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeecc
Q 007917 64 PELN-LVGCCNELNAGYAADGYARSR-GV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTI 140 (585)
Q Consensus 64 ~~i~-~i~~~~E~~A~~~A~gyar~t-g~-~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~ 140 (585)
++ | +-...-|++++.+|.|.|+.. |. .++ .|..+=++-+..++..+...+.|++++....... .+.+..
T Consensus 391 p~-Rfi~~GIaEq~mv~~AaGlA~~G~G~~P~~-~tf~~F~~~~~~~ir~~al~~lpV~~v~thdg~~-~G~DG~----- 462 (654)
T PLN02790 391 EE-RNVRFGVREHGMGAICNGIALHSSGLIPYC-ATFFVFTDYMRAAMRLSALSEAGVIYVMTHDSIG-LGEDGP----- 462 (654)
T ss_pred CC-CeEEeeechHHHHHHHHHHHhcCCCcEEEE-EecHHHHHHHHHHHHHHHhcCCCeEEEEECCcee-ecCCCC-----
Confidence 45 5 447789999999999999985 76 555 4555555567778888889999988887443332 232211
Q ss_pred CCCChHHHHHHhhhceeEE-EEecCcchhHHHHHHHHHHhhh-cCCcEEEEecCCC
Q 007917 141 GLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDTAISTALK-ESKPVYISISCNL 194 (585)
Q Consensus 141 ~~~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~l~~A~~~a~~-~~gPV~i~iP~dv 194 (585)
+||...+..+++.+.-.. .+..+..++.. +++.|.. ..||++|.+|..-
T Consensus 463 -THq~iedla~lR~iPnl~V~~PaD~~E~~~----~l~~al~~~~gP~~irl~R~~ 513 (654)
T PLN02790 463 -THQPIEHLASLRAMPNILMLRPADGNETAG----AYKVAVTNRKRPTVLALSRQK 513 (654)
T ss_pred -CcccHHHHHHhcCCCCcEEEeCCCHHHHHH----HHHHHHHcCCCCEEEEecCCC
Confidence 345567789999876543 34445545444 4444544 3699999999764
No 210
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=92.99 E-value=0.68 Score=47.86 Aligned_cols=98 Identities=17% Similarity=0.091 Sum_probs=64.2
Q ss_pred cEEEEeCCcchHH---HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcch
Q 007917 91 GACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGD 167 (585)
Q Consensus 91 ~v~~~t~GpG~~n---~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~ 167 (585)
.++++..|=|+.+ +..++..|...++|+|+|.-+.... ..... +.... ..|..++.+.+--...++...+.
T Consensus 145 ~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~-~~~~~--~~~~~---~~d~~~~a~a~G~~~~~Vdg~d~ 218 (341)
T TIGR03181 145 NVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWA-ISVPR--SKQTA---APTLAQKAIAYGIPGVQVDGNDV 218 (341)
T ss_pred CEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCCCc-cccch--hhhhC---CcCHHHHHhhCCCCEEEECCCCH
Confidence 6777778888776 2355777889999999999875422 11100 00011 12345666666555666766554
Q ss_pred --hHHHHHHHHHHhhhcCCcEEEEecCCC
Q 007917 168 --AHELIDTAISTALKESKPVYISISCNL 194 (585)
Q Consensus 168 --~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (585)
+.+.+.+|++.|...+||+.|++-..=
T Consensus 219 ~av~~a~~~A~~~a~~~~gP~lIev~t~R 247 (341)
T TIGR03181 219 LAVYAVTKEAVERARSGGGPTLIEAVTYR 247 (341)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 478889999999888899999996543
No 211
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=92.95 E-value=3.5 Score=37.35 Aligned_cols=139 Identities=15% Similarity=-0.016 Sum_probs=74.7
Q ss_pred CEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcchHH-HHHHHHHhhhc-CCcEEE
Q 007917 43 KDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLS-VLNAIAGAYSE-NLPVIC 120 (585)
Q Consensus 43 ~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~n-~~~gl~~A~~~-~~Pll~ 120 (585)
..|++=.|.....++... +.+ -+++..-.=..+.-+|.|.+.+..+-|+++ .|=|... .+..+..+... ++|+++
T Consensus 15 ~~vv~d~G~~~~~~~~~~-~~~-~~~~~~gsmG~~lp~AiGa~~a~~~~Vv~i-~GDG~f~m~~~el~t~~~~~~~~i~~ 91 (157)
T cd02001 15 TPIVSTTGYASRELYDVQ-DRD-GHFYMLGSMGLAGSIGLGLALGLSRKVIVV-DGDGSLLMNPGVLLTAGEFTPLNLIL 91 (157)
T ss_pred CEEEeCCCHhHHHHHHhh-cCC-CCEEeecchhhHHHHHHHHHhcCCCcEEEE-ECchHHHhcccHHHHHHHhcCCCEEE
Confidence 344455565544443222 222 355531111112236667666555533333 3444442 45667777666 599999
Q ss_pred EeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCC
Q 007917 121 IVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (585)
Q Consensus 121 I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~d 193 (585)
|.-+......-.+ ++... ...|..++.+.+--...++.+++++.+.+++|+ ...||..|++..+
T Consensus 92 vV~nN~~~g~~~~---~~~~~--~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~----~~~gp~vi~v~i~ 155 (157)
T cd02001 92 VVLDNRAYGSTGG---QPTPS--SNVNLEAWAAACGYLVLSAPLLGGLGSEFAGLL----ATTGPTLLHAPIA 155 (157)
T ss_pred EEEeCccccccCC---cCCCC--CCCCHHHHHHHCCCceEEcCCHHHHHHHHHHHH----hCCCCEEEEEEec
Confidence 9977554321111 11111 013556777777656677888766666666665 4579999998765
No 212
>PRK07524 hypothetical protein; Provisional
Probab=92.90 E-value=0.74 Score=50.86 Aligned_cols=105 Identities=15% Similarity=0.199 Sum_probs=74.6
Q ss_pred hHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCC-CCHHHHHHH
Q 007917 444 SVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKN-WDYTGLVNA 517 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~-~d~~~la~a 517 (585)
+.-+|-|.+... +++.+|++ |=|... .|.+|.+.++|+++|.-........+ +. ..+.. +|-..+.+.
T Consensus 51 A~~mAdgyar~t-g~~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~G~~~~~~~~~---~~--~~~~~~~d~~~l~~~ 124 (535)
T PRK07524 51 AGFMADGYARVS-GKPGVCFIITGPGMTNIATAMGQAYADSIPMLVISSVNRRASLGK---GR--GKLHELPDQRAMVAG 124 (535)
T ss_pred HHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCCCChhhcCC---CC--ccccccccHHHHhhh
Confidence 557788888775 56655554 555554 99999999999999986544322110 00 01122 578888998
Q ss_pred hcCCCCCccEEEecCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007917 518 IHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 559 (585)
Q Consensus 518 ~G~~~~~~~~~~v~~~~eL~~al~~a~~--~-~~~gp~vIeV~v~ 559 (585)
+-. ...+|++++++...+++|+. . ...||+.|+++.|
T Consensus 125 ~tk-----~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (535)
T PRK07524 125 VAA-----FSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLD 164 (535)
T ss_pred hce-----eEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHh
Confidence 876 88999999999999999886 2 2368999999876
No 213
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=92.88 E-value=0.54 Score=43.65 Aligned_cols=110 Identities=10% Similarity=0.040 Sum_probs=65.0
Q ss_pred hhhhhhhhcC-c-cEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCcc---ceeeccCC-CChHHHHHHhh
Q 007917 80 AADGYARSRG-V-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNR---ILHHTIGL-PDFTQELRCFQ 153 (585)
Q Consensus 80 ~A~gyar~tg-~-~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~---~~~~~~~~-~~~~d~~~~~~ 153 (585)
+|.|.+.+.. + .++++-=| ++.-....|..|...++|+++|.-+......-+.. ...+..+. .+..|..++.+
T Consensus 56 ~aiGa~la~~~~~vv~i~GDG-~f~m~~~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~ 134 (177)
T cd02010 56 GAIGAKLVYPDRKVVAVSGDG-GFMMNSQELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRDSGVDFGNPDFVKYAE 134 (177)
T ss_pred HHHHHHHhCCCCcEEEEEcch-HHHhHHHHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCcccCcCCCCCHHHHHH
Confidence 5677666654 3 44444333 33334567888999999999997765433211100 00000110 01124566777
Q ss_pred hceeEEEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCCC
Q 007917 154 AITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (585)
Q Consensus 154 ~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (585)
.+-....++.+++++.+.+++|+ ..+||..|+++.|-
T Consensus 135 a~G~~~~~v~~~~el~~al~~a~----~~~~p~liev~~~~ 171 (177)
T cd02010 135 SFGAKGYRIESADDLLPVLERAL----AADGVHVIDCPVDY 171 (177)
T ss_pred HCCCEEEEECCHHHHHHHHHHHH----hCCCCEEEEEEecc
Confidence 77666788888877766666665 45799999999864
No 214
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=92.84 E-value=13 Score=38.22 Aligned_cols=152 Identities=18% Similarity=0.066 Sum_probs=84.3
Q ss_pred ccHHHHHHHHHHHcCC--CEEEecCCCC-----hHHHHHhhhc-CCCCeEE-ecCchhhHHHhhhhhhhhcCccEEEEeC
Q 007917 27 GTLGRHLARRLVEIGA--KDVFSVPGDF-----NLTLLDHLIA-EPELNLV-GCCNELNAGYAADGYARSRGVGACVVTF 97 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv--~~vFg~PG~~-----~~~l~~al~~-~~~i~~i-~~~~E~~A~~~A~gyar~tg~~v~~~t~ 97 (585)
++..+++.+.|.+..- +.++.+-.+- ....++.+.+ .|+-|++ ..-.|++++.+|.|.|....+.++....
T Consensus 4 ~~~~~a~~~~L~~~~~~dp~iv~l~~d~~~~~g~~~~~~~f~~~fp~~R~~n~gIaEq~~vg~AaGlA~~G~~pvv~~~~ 83 (327)
T CHL00144 4 VFLFEALREAIDEEMARDPRVFVIGEDVGHYGGSYKVTKGLHEKYGDLRVLDTPIAENSFTGMAIGAAMTGLRPIVEGMN 83 (327)
T ss_pred chHHHHHHHHHHHHHhhCCCEEEEeCcccccCCchhHHHHHHHHCCCccEeeccccHHHHHHHHHHHHHCCCEEEEEeeh
Confidence 4555666666655533 3444443332 1334555543 3444677 5679999999999999966555553322
Q ss_pred CcchHHHHHHHHH--hhh-------cCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEE-EecCcch
Q 007917 98 TVGGLSVLNAIAG--AYS-------ENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQA-VVNNLGD 167 (585)
Q Consensus 98 GpG~~n~~~gl~~--A~~-------~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~-~v~~~~~ 167 (585)
..=..-++.-|.+ |+. -++||++..+.-... +.+. -|+ +.. ..+++.+..+.. ...++.+
T Consensus 84 ~~f~~ra~dQi~~~~a~~~~~~gg~~~~~vv~~~~g~~~~--~~G~-tHs-----~~~--ea~~~~iPgl~V~~Psd~~d 153 (327)
T CHL00144 84 MGFLLLAFNQISNNAGMLHYTSGGNFTIPIVIRGPGGVGR--QLGA-EHS-----QRL--ESYFQSVPGLQIVACSTPYN 153 (327)
T ss_pred hhHHHHHHHHHHHHHHHHhhccCCCccCCEEEEecCCCCC--CCCc-ccc-----ccH--HHHHhcCCCCEEEEeCCHHH
Confidence 2112233333322 333 278988875422111 1111 121 222 388888776553 3457777
Q ss_pred hHHHHHHHHHHhhhcCCcEEEEecC
Q 007917 168 AHELIDTAISTALKESKPVYISISC 192 (585)
Q Consensus 168 ~~~~l~~A~~~a~~~~gPV~i~iP~ 192 (585)
+..+++.|+ ..++||||.-|.
T Consensus 154 ~~~~l~~a~----~~~~Pv~ire~~ 174 (327)
T CHL00144 154 AKGLLKSAI----RSNNPVIFFEHV 174 (327)
T ss_pred HHHHHHHHH----hCCCcEEEEEcH
Confidence 777776665 357999997433
No 215
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.80 E-value=0.56 Score=52.55 Aligned_cols=116 Identities=11% Similarity=0.119 Sum_probs=79.6
Q ss_pred CCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCC
Q 007917 429 NCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPY 503 (585)
Q Consensus 429 ~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~ 503 (585)
+.+++....-.+ +.-+|-|.+... +++.+|++ |=|... .|.+|...+.|+++|.-.-...... .+
T Consensus 49 ~i~~I~~rhE~~---A~~mAdgyar~t-g~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~i~G~~~~~~~~----~~-- 118 (595)
T PRK09107 49 DIQHILVRHEQG---AGHAAEGYARST-GKPGVVLVTSGPGATNAVTPLQDALMDSIPLVCITGQVPTHLIG----SD-- 118 (595)
T ss_pred CCeEEEECChHH---HHHHHHHHHHHh-CCCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEEcCCChhhcC----CC--
Confidence 345555444332 445677887764 45666554 555555 8999999999999998654432211 11
Q ss_pred CCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--cC-CCCeEEEEEEcCC
Q 007917 504 NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQ-KDSLCFIEVFVHK 560 (585)
Q Consensus 504 ~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~~-~~gp~vIeV~v~~ 560 (585)
.+..+|...+++.+-- ...+|++++++...+++|++ .. ..||+.|+|..|-
T Consensus 119 -~~q~~d~~~l~~~vtk-----~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv 172 (595)
T PRK09107 119 -AFQECDTVGITRPCTK-----HNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDV 172 (595)
T ss_pred -CCcccchhhhhhhheE-----EEEEeCCHHHHHHHHHHHHHHhcCCCCceEEEecCCCh
Confidence 1344688888888875 78899999999999998886 22 3589999999874
No 216
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=92.80 E-value=0.6 Score=51.91 Aligned_cols=103 Identities=13% Similarity=0.224 Sum_probs=73.8
Q ss_pred hHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHh
Q 007917 444 SVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAI 518 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 518 (585)
+.-+|.|.+.+. +++.+|++ |=|... .|.+|...+.|+++|.-.=..... ..+. +..+|...+.+.+
T Consensus 58 A~~~Adgyar~t-g~~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~g~~~~~~~----~~~~---~q~~d~~~l~~~~ 129 (557)
T PRK08199 58 AAMMAEAYGKLT-GRPGICFVTRGPGATNASIGVHTAFQDSTPMILFVGQVARDFR----EREA---FQEIDYRRMFGPM 129 (557)
T ss_pred HHHHHHHHHHhc-CCCEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEecCCccccC----CCCc---ccccCHHHhhhhh
Confidence 456788888874 56777777 666665 999999999999988753222111 0111 2346788888877
Q ss_pred cCCCCCccEEEecCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007917 519 HNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 559 (585)
Q Consensus 519 G~~~~~~~~~~v~~~~eL~~al~~a~~--~-~~~gp~vIeV~v~ 559 (585)
-- +..+|++++++...+++|+. . ...||+.|+|+.|
T Consensus 130 tk-----~~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~d 168 (557)
T PRK08199 130 AK-----WVAEIDDAARIPELVSRAFHVATSGRPGPVVLALPED 168 (557)
T ss_pred hc-----eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 65 78889999999888888876 2 2358999999876
No 217
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.72 E-value=0.67 Score=51.74 Aligned_cols=114 Identities=15% Similarity=0.170 Sum_probs=77.5
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+.+. +++.++++ |=|... .+.+|...+.|+++|.-.-...... . .
T Consensus 43 i~~v~~~hE~~---A~~mAdgyar~t-g~~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~G~~~~~~~~----~---~ 111 (574)
T PRK06882 43 IEHVLVRHEQA---AVHMADGYARST-GKVGCVLVTSGPGATNAITGIATAYTDSVPLVILSGQVPSNLIG----T---D 111 (574)
T ss_pred CeEEEeccHHH---HHHHHHHHHHhh-CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccC----C---C
Confidence 34544443332 446677877765 46666655 555555 8899999999999887544322210 1 1
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--cC-CCCeEEEEEEcC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQ-KDSLCFIEVFVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~~-~~gp~vIeV~v~ 559 (585)
.+..+|...+.+.+-- ...+|++++++...+++|+. .. ..||+.|+|..|
T Consensus 112 ~~q~~d~~~l~~~vtk-----~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D 164 (574)
T PRK06882 112 AFQECDMLGISRPVVK-----HSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKD 164 (574)
T ss_pred cccccchhhhhhcccc-----eEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHH
Confidence 1344688888888776 78899999998888888876 22 359999999987
No 218
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.72 E-value=0.68 Score=51.61 Aligned_cols=115 Identities=16% Similarity=0.178 Sum_probs=79.0
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+.+. +++-+|++ |=|... .+.+|...+.|+++|.-.-...... . .
T Consensus 43 i~~v~~rhE~~---A~~mAdgyar~t-g~~gv~~~t~GpG~~n~l~gia~A~~~~~Pvl~i~G~~~~~~~~----~---~ 111 (572)
T PRK08979 43 IEHILVRHEQA---AVHMADGYARAT-GKVGVVLVTSGPGATNTITGIATAYMDSIPMVVLSGQVPSNLIG----N---D 111 (572)
T ss_pred CeEEEeCcHHH---HHHHHHHHHHHh-CCCeEEEECCCchHhHHHHHHHHHhhcCCCEEEEecCCCccccC----C---C
Confidence 44554443332 446788888765 56666665 666555 8889999999999887543322110 1 1
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--cC-CCCeEEEEEEcCC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQ-KDSLCFIEVFVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~~-~~gp~vIeV~v~~ 560 (585)
.+..+|...+++.+-- ...+|++++++...+++|+. .. ..||+.|+|..|-
T Consensus 112 ~~q~~d~~~~~~~itk-----~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 165 (572)
T PRK08979 112 AFQECDMIGISRPVVK-----HSFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDC 165 (572)
T ss_pred CCcccchhHHhhhcee-----EEEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHhH
Confidence 1344688888888876 78899999999999988886 22 3589999999773
No 219
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=92.66 E-value=0.57 Score=51.92 Aligned_cols=104 Identities=19% Similarity=0.203 Sum_probs=73.9
Q ss_pred hHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHh
Q 007917 444 SVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAI 518 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 518 (585)
+.-+|.|.+.+. +++.+|++ |=|... .+..|...+.|+++|.-.-...... .+. +..+|...+++.+
T Consensus 50 A~~~Adgyar~s-g~~gv~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~g~~~~~~~~----~~~---~q~~d~~~~~~~~ 121 (548)
T PRK08978 50 AAMAAIGYARAT-GKVGVCIATSGPGATNLITGLADALLDSVPVVAITGQVSSPLIG----TDA---FQEIDVLGLSLAC 121 (548)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccC----CCC---CcccchhccccCc
Confidence 456788888875 57777776 566665 8899999999999988644432210 111 2345666777776
Q ss_pred cCCCCCccEEEecCHHHHHHHHHHhhh--cC-CCCeEEEEEEcCC
Q 007917 519 HNGEGKCWTAKVRSEDELTEAMKTATG--EQ-KDSLCFIEVFVHK 560 (585)
Q Consensus 519 G~~~~~~~~~~v~~~~eL~~al~~a~~--~~-~~gp~vIeV~v~~ 560 (585)
-- +..+|++++++...+++|+. .. ..||+.|||+.|-
T Consensus 122 tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv 161 (548)
T PRK08978 122 TK-----HSFLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKDI 161 (548)
T ss_pred ee-----eEEEECCHHHHHHHHHHHHHHHhcCCCCcEEEecChhh
Confidence 55 78889999999988888876 22 3589999999873
No 220
>PRK07064 hypothetical protein; Provisional
Probab=92.65 E-value=0.98 Score=50.02 Aligned_cols=116 Identities=12% Similarity=0.085 Sum_probs=77.4
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|.|.+.+. +++.+|++ |=|... .+.+|...+.|+++|.-+=....+. .+. .
T Consensus 42 i~~i~~~hE~~---A~~~A~gyar~t-g~~~v~~~t~GpG~~N~~~~i~~A~~~~~Pvl~i~g~~~~~~~~----~~~-~ 112 (544)
T PRK07064 42 IRFVPARGEAG---AVNMADAHARVS-GGLGVALTSTGTGAGNAAGALVEALTAGTPLLHITGQIETPYLD----QDL-G 112 (544)
T ss_pred ccEEeeccHHH---HHHHHHHHHHhc-CCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCccccc----CCC-c
Confidence 34554443332 445788888765 45666655 666665 8899999999999998753322110 000 0
Q ss_pred CCC-CCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--cC-CCCeEEEEEEcC
Q 007917 505 VIK-NWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQ-KDSLCFIEVFVH 559 (585)
Q Consensus 505 ~~~-~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~~-~~gp~vIeV~v~ 559 (585)
.++ .+|...+++.+-- ..+++++++++..++++|+. .. ..||+.|+|..|
T Consensus 113 ~~~~~~d~~~~~~~~tk-----~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d 166 (544)
T PRK07064 113 YIHEAPDQLTMLRAVSK-----AAFRVRSAETALATIREAVRVALTAPTGPVSVEIPID 166 (544)
T ss_pred ccccccCHHHHhhhhcc-----eEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHh
Confidence 012 2588888888875 78899999999888888876 22 369999999976
No 221
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=92.57 E-value=0.74 Score=51.41 Aligned_cols=104 Identities=13% Similarity=0.145 Sum_probs=72.3
Q ss_pred hHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHh
Q 007917 444 SVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAI 518 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 518 (585)
+.-+|-|.+.+. +++.+|++ |=|... .|.+|...+.|+++|.-.=..... ..+ .+..+|...+.+.+
T Consensus 51 A~~~Adgyar~t-g~~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~g~~~~~~~----~~~---~~Q~~d~~~l~~~v 122 (579)
T TIGR03457 51 AGHMADGFARVT-GRMSMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVTPEAGTKTI----GLG---GFQEADQLPMFQEF 122 (579)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCchHHHHHHHHHHHhhcCCCEEEEeCCCccccC----CCC---CCcccchhhhhhcc
Confidence 345677777764 56766655 666665 999999999999998642222111 011 13445778888888
Q ss_pred cCCCCCccEEEecCHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007917 519 HNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVHK 560 (585)
Q Consensus 519 G~~~~~~~~~~v~~~~eL~~al~~a~~--~~~~gp~vIeV~v~~ 560 (585)
-- ...+|++++++...+++|+. ....||+.|+++.|-
T Consensus 123 tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv 161 (579)
T TIGR03457 123 TK-----YQGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDY 161 (579)
T ss_pred ee-----EEEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcch
Confidence 76 78889999998888888865 234589999999773
No 222
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=92.56 E-value=0.75 Score=51.36 Aligned_cols=103 Identities=12% Similarity=0.219 Sum_probs=73.6
Q ss_pred hHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHh
Q 007917 444 SVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAI 518 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 518 (585)
+.-+|-|.+.+. +++.+|++ |=|... .|.+|...++|+++|.-.=..+.. . ...+..+|-..+.+.+
T Consensus 61 A~~~Adgyar~t-g~~gv~~~t~GpG~~N~~~gl~~A~~~~~Pvl~I~G~~~~~~~-----~--~~~~Q~~d~~~l~~~v 132 (578)
T PRK06112 61 GGAMADGYARVS-GKVAVVTAQNGPAATLLVAPLAEALKASVPIVALVQDVNRDQT-----D--RNAFQELDHIALFQSC 132 (578)
T ss_pred HHHHHHHHHHHh-CCCEEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEecCCccccC-----C--CCCccccChhhhhccc
Confidence 445677888765 67887777 555544 899999999999999854322211 0 0112346778888888
Q ss_pred cCCCCCccEEEecCHHHHHHHHHHhhh--cC-CCCeEEEEEEcC
Q 007917 519 HNGEGKCWTAKVRSEDELTEAMKTATG--EQ-KDSLCFIEVFVH 559 (585)
Q Consensus 519 G~~~~~~~~~~v~~~~eL~~al~~a~~--~~-~~gp~vIeV~v~ 559 (585)
-. ...++.+++++...+++|+. .. ..||+.|+|+.|
T Consensus 133 tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~D 171 (578)
T PRK06112 133 TK-----WVRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPAD 171 (578)
T ss_pred cc-----eEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHh
Confidence 76 78889999998888888875 22 358999999987
No 223
>PRK12474 hypothetical protein; Provisional
Probab=92.56 E-value=0.8 Score=50.40 Aligned_cols=115 Identities=14% Similarity=0.223 Sum_probs=77.0
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+.+. +++.+|++ |=|... .|.+|...+.|+++|.-....... . ..
T Consensus 44 i~~i~~rhE~~---A~~mAdgYaR~t-g~~gv~~~t~GpG~~N~~~gl~~A~~d~~Pvl~i~G~~~~~~~-----~--~~ 112 (518)
T PRK12474 44 MRPVLCLFEGV---VTGAADGYGRIA-GKPAVTLLHLGPGLANGLANLHNARRAASPIVNIVGDHAVEHL-----Q--YD 112 (518)
T ss_pred ceEEEecchHH---HHHHHHHHHHHh-CCCEEEEEccchhHhHhHHHHHHHhhcCCCEEEEeccCchhhc-----C--CC
Confidence 34554443322 345677777764 56666554 555444 888899999999999865332211 0 01
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh---cCCCCeEEEEEEcCC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG---EQKDSLCFIEVFVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~---~~~~gp~vIeV~v~~ 560 (585)
.+...|...+++.+-- ...++++++++..+|++|+. ....||++|+|+.|-
T Consensus 113 ~~q~~d~~~~~~~vtk-----~~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv 166 (518)
T PRK12474 113 APLTSDIDGFARPVSR-----WVHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADV 166 (518)
T ss_pred CccccCHHHhhhcccc-----eeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 1233588888887765 78889999999999999885 224589999999874
No 224
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=92.53 E-value=1.1 Score=42.63 Aligned_cols=146 Identities=12% Similarity=-0.029 Sum_probs=80.5
Q ss_pred EEEecCCCChHHHHHhhhcCCCCeEEecCchh---hHHHhhhhhhhhcC-c-cEEEEeCCcchHHHHHHHHHhhhcCCcE
Q 007917 44 DVFSVPGDFNLTLLDHLIAEPELNLVGCCNEL---NAGYAADGYARSRG-V-GACVVTFTVGGLSVLNAIAGAYSENLPV 118 (585)
Q Consensus 44 ~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~---~A~~~A~gyar~tg-~-~v~~~t~GpG~~n~~~gl~~A~~~~~Pl 118 (585)
.++.=-|.+...+...+.-...-+++....=. -+.-+|.|.+.+.. + .++++-=| ++.-....|..|...++|+
T Consensus 17 ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la~p~~~vv~i~GDG-sf~m~~~eL~Ta~~~~lpv 95 (205)
T cd02003 17 VVINAAGSLPGDLHKLWRARTPGGYHLEYGYSCMGYEIAAGLGAKLAKPDREVYVLVGDG-SYLMLHSEIVTAVQEGLKI 95 (205)
T ss_pred EEEECCCcchHHHHHhCCcCCCCcEEcCCCcchhhhHHHHHHHHHHhCCCCeEEEEEccc-hhhccHHHHHHHHHcCCCC
Confidence 34444466555555544322234555432211 12336667665543 4 44443333 3333457788899999999
Q ss_pred EEEeCCCCCccCCCc-------cceeeccC-----------CCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhh
Q 007917 119 ICIVGGPNSNDYGTN-------RILHHTIG-----------LPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTAL 180 (585)
Q Consensus 119 l~I~g~~~~~~~~~~-------~~~~~~~~-----------~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~ 180 (585)
++|.-+......-+. ..+...+. .....|...+.+.+-....++.+++++.+.+++|+
T Consensus 96 ~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~el~~al~~a~---- 171 (205)
T cd02003 96 IIVLFDNHGFGCINNLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARSLGARVEKVKTIEELKAALAKAK---- 171 (205)
T ss_pred EEEEEECCccHHHHHHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHhCCCEEEEECCHHHHHHHHHHHH----
Confidence 988887654321000 00000000 00113556777877666778888777766666664
Q ss_pred hcCCcEEEEecCCC
Q 007917 181 KESKPVYISISCNL 194 (585)
Q Consensus 181 ~~~gPV~i~iP~dv 194 (585)
..+||+.|++..|-
T Consensus 172 ~~~gp~lIeV~v~~ 185 (205)
T cd02003 172 ASDRTTVIVIKTDP 185 (205)
T ss_pred hCCCCEEEEEEeec
Confidence 45899999999874
No 225
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=92.51 E-value=0.57 Score=51.67 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=76.0
Q ss_pred hHHHHHHHhhhcCCCcEEE--EEcCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHh
Q 007917 444 SVGATLGYAQAAKDKRVIA--CIGDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAI 518 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~--v~GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 518 (585)
+.-+|-|.+.+. +++-|| ..|=|... .|.+|...+.|+++|.-.=....+. . ..+...|...+.+.+
T Consensus 51 Aa~mAdgyar~T-GkpgV~~~tsGPGatN~~tgla~A~~d~~Pll~itGqv~~~~~g----~---~afQe~D~~~l~~p~ 122 (550)
T COG0028 51 AAFAADGYARAT-GKPGVCLVTSGPGATNLLTGLADAYMDSVPLLAITGQVPTSLIG----T---DAFQEVDQVGLFRPI 122 (550)
T ss_pred HHHHHHHHHHHc-CCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeCCccccccC----c---chhhhcchhhHhhhh
Confidence 556788888764 566555 45777777 9999999999999887622221110 1 123456999999998
Q ss_pred cCCCCCccEEEecCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007917 519 HNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 559 (585)
Q Consensus 519 G~~~~~~~~~~v~~~~eL~~al~~a~~--~-~~~gp~vIeV~v~ 559 (585)
-- +.++|.+++++...+++|+. . ...||++|+++.|
T Consensus 123 tk-----~~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~D 161 (550)
T COG0028 123 TK-----YNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKD 161 (550)
T ss_pred he-----eEEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChh
Confidence 77 89999999999999999986 2 3458999999876
No 226
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=92.48 E-value=0.72 Score=51.30 Aligned_cols=103 Identities=19% Similarity=0.208 Sum_probs=72.6
Q ss_pred hHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHh
Q 007917 444 SVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAI 518 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 518 (585)
+.-+|-|.+.+. +++.+|++ |=|... .|.+|...+.|+++|.-.-....+ .. ..+...|...+++.+
T Consensus 57 A~~~Adgyar~t-g~~~v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~G~~~~~~~----~~---~~~q~~d~~~~~~~i 128 (561)
T PRK06048 57 AAHAADGYARAT-GKVGVCVATSGPGATNLVTGIATAYMDSVPIVALTGQVPRSMI----GN---DAFQEADITGITMPI 128 (561)
T ss_pred HHHHHHHHHHHh-CCCeEEEECCCCcHHHHHHHHHHHhhcCCCEEEEeccCCcccc----CC---CCccccchhhhccCc
Confidence 557788888765 56766665 566665 999999999999998743221111 01 113346778888877
Q ss_pred cCCCCCccEEEecCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007917 519 HNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 559 (585)
Q Consensus 519 G~~~~~~~~~~v~~~~eL~~al~~a~~--~-~~~gp~vIeV~v~ 559 (585)
-- ..++|++++++...+++|+. . ...||+.|+|..|
T Consensus 129 tk-----~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~d 167 (561)
T PRK06048 129 TK-----HNYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKD 167 (561)
T ss_pred ce-----EEEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChh
Confidence 65 78889999999888888876 1 2358999999876
No 227
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=92.45 E-value=0.83 Score=50.96 Aligned_cols=114 Identities=8% Similarity=0.049 Sum_probs=76.1
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+.+. +++.+|++ |=|... .+.+|...++|+++|.-.-...... ..
T Consensus 39 i~~v~~rhE~~---A~~~Adgyar~t-gk~gv~~~t~GPG~~n~~~~i~~A~~~~~Pvl~I~G~~~~~~~~-------~~ 107 (575)
T TIGR02720 39 IHYIQVRHEEV---GALAAAADAKLT-GKIGVCFGSAGPGATHLLNGLYDAKEDHVPVLALVGQVPTTGMN-------MD 107 (575)
T ss_pred CcEEEeccHHH---HHHHHHHHHHhh-CCceEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEecCCccccCC-------CC
Confidence 44555444332 345677777654 56766665 555554 8889999999999998654433221 11
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--cCCCCeEEEEEEcC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~~~~gp~vIeV~v~ 559 (585)
.+..+|-..+++.+-. ...+|.+++++...+++|+. ....||+.|+|+.|
T Consensus 108 ~~q~id~~~~~~~vtk-----~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 159 (575)
T TIGR02720 108 TFQEMNENPIYADVAV-----YNRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVD 159 (575)
T ss_pred Ccceechhhhhhhcce-----EEEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcc
Confidence 1334577788888875 67888888888777777665 23679999999987
No 228
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=92.36 E-value=0.41 Score=50.95 Aligned_cols=115 Identities=26% Similarity=0.303 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHH
Q 007917 220 GLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEI 299 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~ 299 (585)
..+++++.+++.|+++++|+++ |.+.........+.+|++.+|..+- +.......+..+.+.. .|..+. ...++
T Consensus 55 sWdeAl~~ia~~L~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~---~g~~~~-~~~di 128 (415)
T cd02761 55 SLEEAIEKAAEILKEAKRPLFY-GLGTTVCEAQRAGIELAEKLGAIID-HAASVCHGPNLLALQD---SGWPTT-TLGEV 128 (415)
T ss_pred CcHHHHHHHHHHHHhhcCCEEE-EcccchHHHHHHHHHHHHHHCCCcc-ccccccccchHHHHHh---CCCccc-cHHHH
Confidence 3577899999999999999887 4444433456778899999997432 1111111121111111 011111 22344
Q ss_pred hhhCCEEEEeCCccCCcccccc-c--c----c-----CCCcceEEEcCCceee
Q 007917 300 VESADAYVFVGPIFNDYSSVGY-S--L----L-----IKKEKAIIVQPHRVTV 340 (585)
Q Consensus 300 l~~aD~vl~lG~~~~~~~~~~~-~--~----~-----~~~~~~i~id~~~~~~ 340 (585)
..++|+||++|+.+.+.....+ . . . .++.++|.||+.....
T Consensus 129 ~~~ad~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~t 181 (415)
T cd02761 129 KNRADVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDT 181 (415)
T ss_pred HhcCCEEEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcch
Confidence 4589999999988655432211 1 0 0 2345899999866543
No 229
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=92.26 E-value=1 Score=42.16 Aligned_cols=111 Identities=18% Similarity=0.111 Sum_probs=67.6
Q ss_pred HHHhhhhhhhhcC-c-cEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCC--------ccceeeccCCCChH
Q 007917 77 AGYAADGYARSRG-V-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGT--------NRILHHTIGLPDFT 146 (585)
Q Consensus 77 A~~~A~gyar~tg-~-~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~--------~~~~~~~~~~~~~~ 146 (585)
+.-+|.|.+.+.. + .++++ -.-++.-.+..|..|...++|+++|.-+......-+ +....... ....
T Consensus 55 ~lp~aiGa~la~~~~~vv~i~-GDG~f~~~~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 131 (186)
T cd02015 55 GLPAAIGAKVARPDKTVICID-GDGSFQMNIQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRYSHTTL--DSNP 131 (186)
T ss_pred hHHHHHHHHHhCCCCeEEEEE-cccHHhccHHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCceeeccC--CCCC
Confidence 3446677666553 3 44443 223444467788889999999999888765431100 00000000 0113
Q ss_pred HHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCCC
Q 007917 147 QELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (585)
Q Consensus 147 d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (585)
|...+.+.+-....++.+++++.+.+++|+ ...||+.|++..|-
T Consensus 132 d~~~~a~a~G~~~~~v~~~~el~~al~~a~----~~~~p~liev~~~~ 175 (186)
T cd02015 132 DFVKLAEAYGIKGLRVEKPEELEAALKEAL----ASDGPVLLDVLVDP 175 (186)
T ss_pred CHHHHHHHCCCceEEeCCHHHHHHHHHHHH----hCCCCEEEEEEeCC
Confidence 556778887777888888776666665554 45799999999874
No 230
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=92.24 E-value=0.73 Score=51.31 Aligned_cols=115 Identities=14% Similarity=0.192 Sum_probs=80.0
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-. .+.-+|-|.+... +++-+|++ |=|... .|.+|...+.|+++|.-.-....+. .+
T Consensus 49 i~~i~~rhE~---~A~~~Adgyar~t-g~~gv~~~t~GPG~~n~~~gla~A~~~~~Pvl~i~G~~~~~~~~----~~--- 117 (566)
T PRK07282 49 IRHILARHEQ---GALHEAEGYAKST-GKLGVAVVTSGPGATNAITGIADAMSDSVPLLVFTGQVARAGIG----KD--- 117 (566)
T ss_pred ceEEEecCHH---HHHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecccccccCC----CC---
Confidence 4455544433 2456777887765 45665555 666666 8899999999999998665543321 11
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--c-CCCCeEEEEEEcCC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~-~~~gp~vIeV~v~~ 560 (585)
.+...|...+++.+-. ...++++++++..++++|+. . ...||+.|+|..|-
T Consensus 118 ~~q~~d~~~~~~~itk-----~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv 171 (566)
T PRK07282 118 AFQEADIVGITMPITK-----YNYQIRETADIPRIITEAVHIATTGRPGPVVIDLPKDV 171 (566)
T ss_pred CccccChhchhcCCCc-----eeEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChhh
Confidence 1234577788888876 78899999999988888876 1 23589999999874
No 231
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=92.19 E-value=2.4 Score=47.26 Aligned_cols=115 Identities=14% Similarity=0.107 Sum_probs=78.3
Q ss_pred CCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCC
Q 007917 429 NCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPY 503 (585)
Q Consensus 429 ~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~ 503 (585)
+.+++....-.+ +.-+|-|.+.+. +++.+|++ |=|... .|.+|...+.|+++|.-.-...... .+.
T Consensus 51 ~i~~i~~~hE~~---A~~~Adgyar~t-g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~~----~~~- 121 (564)
T PRK08155 51 QIRHILARHEQG---AGFIAQGMARTT-GKPAVCMACSGPGATNLVTAIADARLDSIPLVCITGQVPASMIG----TDA- 121 (564)
T ss_pred CceEEEeccHHH---HHHHHHHHHHHc-CCCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeccCCccccc----CCC-
Confidence 344555444332 446688888875 57777765 566555 8999999999999997543322210 111
Q ss_pred CCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--cC-CCCeEEEEEEcC
Q 007917 504 NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQ-KDSLCFIEVFVH 559 (585)
Q Consensus 504 ~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~~-~~gp~vIeV~v~ 559 (585)
+..+|...+++.+-- ..+++++++++...+++|+. .. ..||+.|+|..|
T Consensus 122 --~q~~d~~~~~~~~tk-----~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~D 173 (564)
T PRK08155 122 --FQEVDTYGISIPITK-----HNYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKD 173 (564)
T ss_pred --ccccchhhhhhccce-----EEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 234577778887765 78889999999988888876 22 358999999866
No 232
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=92.16 E-value=1.7 Score=40.26 Aligned_cols=109 Identities=14% Similarity=0.031 Sum_probs=63.2
Q ss_pred HhhhhhhhhcC-c-cEEEEeCCcchHH--HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceee---c-cCCCChHHHHH
Q 007917 79 YAADGYARSRG-V-GACVVTFTVGGLS--VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHH---T-IGLPDFTQELR 150 (585)
Q Consensus 79 ~~A~gyar~tg-~-~v~~~t~GpG~~n--~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~---~-~~~~~~~d~~~ 150 (585)
-+|.|.+.+.. + .+++ .|=|... .+..+..|...++|+++|.-+......-+...... . .......|..+
T Consensus 58 ~~AiGa~la~p~~~Vv~i--~GDG~f~~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~ 135 (178)
T cd02008 58 GVAIGMAKASEDKKVVAV--IGDSTFFHSGILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKTLTEPTTVIDIEA 135 (178)
T ss_pred HHHhhHHhhCCCCCEEEE--ecChHHhhccHHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcccccCCCCccCHHH
Confidence 35566665554 3 3444 3444432 25788899999999999988765432111100000 0 00001135677
Q ss_pred HhhhceeEEEEecCcchhHHHHHHHHHHhhhcCCcEEEEe
Q 007917 151 CFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISI 190 (585)
Q Consensus 151 ~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~i 190 (585)
+++.+--...++.+++++.+ +.+|++.|...+||..|++
T Consensus 136 ~a~a~G~~~~~v~~~~~l~~-~~~al~~a~~~~gp~lI~v 174 (178)
T cd02008 136 LVRAIGVKRVVVVDPYDLKA-IREELKEALAVPGVSVIIA 174 (178)
T ss_pred HHHHCCCCEEEecCccCHHH-HHHHHHHHHhCCCCEEEEE
Confidence 88887666777888887763 3445555555578988876
No 233
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=92.04 E-value=2.2 Score=47.76 Aligned_cols=115 Identities=19% Similarity=0.199 Sum_probs=76.9
Q ss_pred CCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCC
Q 007917 429 NCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPY 503 (585)
Q Consensus 429 ~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~ 503 (585)
+.+++....-.+ +.-+|-|.+.+. +++.+|++ |=|... .|.+|...+.|+++|.-.=..... + .
T Consensus 59 ~i~~i~~rhE~~---A~~~AdgYar~t-g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~~~~~~~------~-~ 127 (587)
T PRK06965 59 KIQHVLVRHEQA---AVHAADGYARAT-GKVGVALVTSGPGVTNAVTGIATAYMDSIPMVVISGQVPTAAI------G-Q 127 (587)
T ss_pred CCeEEEeCCHHH---HHHHHHHHHHHh-CCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCcccc------C-C
Confidence 345655544443 345788888875 45655554 444444 888999999999988742221111 0 1
Q ss_pred CCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--cC-CCCeEEEEEEcC
Q 007917 504 NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQ-KDSLCFIEVFVH 559 (585)
Q Consensus 504 ~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~~-~~gp~vIeV~v~ 559 (585)
..+..+|...+.+.+-- ...+|.+++++...+++|+. .. ..||+.|+|..|
T Consensus 128 ~~~q~~d~~~l~~~itk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D 181 (587)
T PRK06965 128 DAFQECDTVGITRPIVK-----HNFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKD 181 (587)
T ss_pred CCcccccHHHHhcCCcc-----eeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 11344688888888876 78899999998888888876 22 358999999987
No 234
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=91.91 E-value=1 Score=50.68 Aligned_cols=114 Identities=15% Similarity=0.132 Sum_probs=78.4
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-. .+.-+|.|.+.+. +++.+|++ |=|... .|..|...++|+++|.-.-...... . .
T Consensus 70 i~~v~~rhE~---~A~~~Adgyar~t-g~~gv~~~t~GPG~~N~l~gl~~A~~~~~PllvI~G~~~~~~~~----~---~ 138 (612)
T PRK07789 70 VRHVLVRHEQ---GAGHAAEGYAQAT-GRVGVCMATSGPGATNLVTPIADANMDSVPVVAITGQVGRGLIG----T---D 138 (612)
T ss_pred ceEEEeccHH---HHHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecCCCccccC----C---C
Confidence 3455444333 2456788888775 46666555 555554 8899999999999998654432220 1 1
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~-~~~gp~vIeV~v~ 559 (585)
.+..+|...+++.+-- ..++|++++++...+++|+. . ...||+.|+|..|
T Consensus 139 ~~q~~d~~~l~~~~tk-----~s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 191 (612)
T PRK07789 139 AFQEADIVGITMPITK-----HNFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKD 191 (612)
T ss_pred cCcccchhhhhhccee-----EEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccc
Confidence 1344688888888876 78889999999998888875 2 2358999999987
No 235
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=91.58 E-value=0.96 Score=50.04 Aligned_cols=114 Identities=16% Similarity=0.138 Sum_probs=75.7
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+... +++.+|++ |=|... .+.+|...+.|+++|.-.-...... . .
T Consensus 37 i~~i~~~hE~~---A~~~Adgyar~t-g~~gv~~~t~GpG~~n~l~gl~~A~~~~~Pvl~I~G~~~~~~~~----~---~ 105 (539)
T TIGR02418 37 IELIVVRHEQN---AAFMAQAVGRIT-GKPGVALVTSGPGCSNLVTGLATANSEGDPVVAIGGQVKRADLL----K---L 105 (539)
T ss_pred CCEEEeCcHHH---HHHHHHHHHHHh-CCceEEEECCCCCHhHHHHHHHHHhhcCCCEEEEeCCCcccccc----c---C
Confidence 34554443332 334677777765 45666665 555555 8888999999999998643322210 1 1
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~-~~~gp~vIeV~v~ 559 (585)
.+..+|-..+++.+-- ...++++++++...+++|+. . ...||+.|++..|
T Consensus 106 ~~q~~d~~~~~~~~tk-----~~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~d 158 (539)
T TIGR02418 106 THQSMDNVALFRPITK-----YSAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQD 158 (539)
T ss_pred cccccchhhhhhccee-----eeeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChh
Confidence 1244577778888765 78889999999888888875 2 2358999999988
No 236
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=91.57 E-value=0.51 Score=47.82 Aligned_cols=107 Identities=24% Similarity=0.186 Sum_probs=67.2
Q ss_pred hhhhh---cCc-cEEEEeCCcchHH---HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhc
Q 007917 83 GYARS---RGV-GACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAI 155 (585)
Q Consensus 83 gyar~---tg~-~v~~~t~GpG~~n---~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 155 (585)
|+|++ .+. .|+++..|=|+++ ..-+|--|...+.|+|+|+-+......-.. . +........+ ....-.+
T Consensus 112 G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~~aist~~-~--~~~~~~~~~~-~a~~~gi 187 (300)
T PF00676_consen 112 GVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQYAISTPT-E--EQTASPDIAD-RAKGYGI 187 (300)
T ss_dssp HHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEESEETTEEH-H--HHCSSSTSGG-GGGGTTS
T ss_pred chhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCCcccccCc-c--ccccccchhh-hhhccCC
Confidence 55543 455 8888888888766 667777788999999999976432211000 0 0000001111 1112234
Q ss_pred eeEEEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCC
Q 007917 156 TCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (585)
Q Consensus 156 ~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~d 193 (585)
.-....=.++..+.+.+.+|++.+..++||+.|++=.-
T Consensus 188 p~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~ty 225 (300)
T PF00676_consen 188 PGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTY 225 (300)
T ss_dssp EEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE-
T ss_pred cEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeec
Confidence 55566667889999999999999999999999998643
No 237
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=91.54 E-value=0.94 Score=50.66 Aligned_cols=114 Identities=16% Similarity=0.127 Sum_probs=77.2
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-. .+.-+|-|.+... +++.+|++ |=|... .|..|...+.|+++|.-.=..+.+. .+.
T Consensus 52 i~~i~~rhE~---~A~~~Adgyar~t-g~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~~~~~~~~----~~~-- 121 (585)
T CHL00099 52 IKHILVRHEQ---GAAHAADGYARST-GKVGVCFATSGPGATNLVTGIATAQMDSVPLLVITGQVGRAFIG----TDA-- 121 (585)
T ss_pred ceEEEecCHH---HHHHHHHHHHHhc-CCcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCccccC----CCC--
Confidence 3455444333 2446788888765 56777666 566555 8899999999999998654332210 111
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh-c--CCCCeEEEEEEcC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG-E--QKDSLCFIEVFVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~-~--~~~gp~vIeV~v~ 559 (585)
+..+|...+++.+-- ...+|.+++++...+++|+. . ...||+.|++..|
T Consensus 122 -~q~~d~~~~~~~~tk-----~~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~D 173 (585)
T CHL00099 122 -FQEVDIFGITLPIVK-----HSYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKD 173 (585)
T ss_pred -ccccchhhhhcCcee-----EEEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChh
Confidence 233566667777655 78889999999999999876 2 2358999999977
No 238
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=91.28 E-value=1.1 Score=50.31 Aligned_cols=115 Identities=7% Similarity=0.019 Sum_probs=76.7
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+.+. +++.+|++ |=|... .|..|...++|+++|.-.=..... ..+
T Consensus 43 i~~i~~rhE~~---A~~~Adgyar~t-g~~gv~~~t~GPG~~n~~~gi~~A~~d~vPvl~I~G~~~~~~~----~~~--- 111 (597)
T PRK08273 43 PEFVQARHEEM---AAFMAVAHAKFT-GEVGVCLATSGPGAIHLLNGLYDAKLDHVPVVAIVGQQARAAL----GGH--- 111 (597)
T ss_pred CeEEEeccHHH---HHHHHHHHHHHh-CCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEecCCchhhc----CCC---
Confidence 44555444332 345677777765 45666655 666665 889999999999998843221111 011
Q ss_pred CCCCCCHHHHHHHhc-CCCCCccEEEecCHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007917 505 VIKNWDYTGLVNAIH-NGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G-~~~~~~~~~~v~~~~eL~~al~~a~~--~~~~gp~vIeV~v~~ 560 (585)
.+..+|...+.+.+- . ...++++++++...+++|+. ....||+.|+|+.|-
T Consensus 112 ~~q~~d~~~l~~~vt~k-----~~~~v~~~~~~~~~l~~A~~~A~~~~gPV~i~iP~Dv 165 (597)
T PRK08273 112 YQQEVDLQSLFKDVAGA-----FVQMVTVPEQLRHLVDRAVRTALAERTVTAVILPNDV 165 (597)
T ss_pred CCCccCHHHHHHHHHHH-----HeeEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeCcch
Confidence 123467778888876 4 68889999998888888876 234589999999773
No 239
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=91.25 E-value=0.75 Score=41.78 Aligned_cols=101 Identities=13% Similarity=0.018 Sum_probs=62.0
Q ss_pred chHHHHHHHhhhcCCCcEEEE-EcCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHh
Q 007917 443 WSVGATLGYAQAAKDKRVIAC-IGDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAI 518 (585)
Q Consensus 443 ~~lpaAiGaalA~p~~~vv~v-~GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 518 (585)
.+..+|-|++.+. ++++++ .|-|... .|.++...+.|+++|+-+........ .......+|...+.+.
T Consensus 52 ~A~~~A~g~~r~~--~~v~~~~~gpG~~n~~~~l~~a~~~~~P~v~i~g~~~~~~~~~-----~~~~~~~~~~~~~~~~- 123 (160)
T cd07034 52 AAAEAAIGASAAG--ARAMTATSGPGLNLMAEALYLAAGAELPLVIVVAQRPGPSTGL-----PKPDQSDLMAARYGGH- 123 (160)
T ss_pred HHHHHHHHHHhhC--CcEEEeeCcchHHHHHHHHHHHHhCCCCEEEEEeeCCCCCCCC-----CCcCcHHHHHHHhCCC-
Confidence 3567777887753 334333 3555554 88889889999999997766544310 0001112333334333
Q ss_pred cCCCCCccEEEecCHHHHHHHHHHhhh--cCCCCeEEEEE
Q 007917 519 HNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEV 556 (585)
Q Consensus 519 G~~~~~~~~~~v~~~~eL~~al~~a~~--~~~~gp~vIeV 556 (585)
.. ...++.+++++...+++|+. ....+|++|-+
T Consensus 124 ~~-----~~~~~~~~~~~~~~~~~A~~~a~~~~~Pv~l~~ 158 (160)
T cd07034 124 PW-----PVLAPSSVQEAFDLALEAFELAEKYRLPVIVLS 158 (160)
T ss_pred CE-----EEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 23 67789999999888888876 23347888753
No 240
>PRK06163 hypothetical protein; Provisional
Probab=91.23 E-value=1.9 Score=40.87 Aligned_cols=108 Identities=14% Similarity=0.075 Sum_probs=63.7
Q ss_pred HHhhhhhhhhcC-ccEEEEeCCcch-HHHHHHHHHhhh-cCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhh
Q 007917 78 GYAADGYARSRG-VGACVVTFTVGG-LSVLNAIAGAYS-ENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQA 154 (585)
Q Consensus 78 ~~~A~gyar~tg-~~v~~~t~GpG~-~n~~~gl~~A~~-~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 154 (585)
.-+|.|.+.+.. +-|+.+ .|=|. .-.+..|..+.. .++|+++|.-+........+. .... ....|...+.+.
T Consensus 63 lpaAiGaalA~p~r~Vv~i-~GDG~f~m~~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~---~~~~-~~~~Df~~lA~a 137 (202)
T PRK06163 63 FPIALGVALAQPKRRVIAL-EGDGSLLMQLGALGTIAALAPKNLTIIVMDNGVYQITGGQ---PTLT-SQTVDVVAIARG 137 (202)
T ss_pred HHHHHHHHHhCCCCeEEEE-EcchHHHHHHHHHHHHHHhcCCCeEEEEEcCCchhhcCCc---cCCC-CCCCCHHHHHHH
Confidence 346677666553 333333 34443 335677777754 478998888876543221111 0010 111355667776
Q ss_pred ceeE-EEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCCC
Q 007917 155 ITCS-QAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (585)
Q Consensus 155 ~~k~-~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (585)
+--. ..++.+++++...+++|+ ...||+.|++..|-
T Consensus 138 ~G~~~~~~v~~~~el~~al~~a~----~~~~p~lIeV~i~~ 174 (202)
T PRK06163 138 AGLENSHWAADEAHFEALVDQAL----SGPGPSFIAVRIDD 174 (202)
T ss_pred CCCceEEEeCCHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence 6443 567888887777777665 44799999998763
No 241
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=91.21 E-value=0.83 Score=50.88 Aligned_cols=120 Identities=13% Similarity=0.160 Sum_probs=77.8
Q ss_pred eeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeee-ecCCCCC
Q 007917 431 GYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVE-IHDGPYN 504 (585)
Q Consensus 431 ~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~-~~~~~~~ 504 (585)
+++....-.+ +.-+|-|.+... +++.+|++ |=|... .|.+|...+.|+++|.-+-......+. ..+....
T Consensus 52 ~~V~~rhE~~---A~~~Adgyar~t-gk~gv~~~t~GPG~~N~~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~ 127 (569)
T PRK08327 52 EFVICPHEIV---AISMAHGYALVT-GKPQAVMVHVDVGTANALGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIH 127 (569)
T ss_pred cEEecCCHHH---HHHHHHHHHHhh-CCCeEEEEecCHHHHHHHHHHHHHhhcCCCEEEEeccCCccccccccccccCcc
Confidence 4554443332 445677777764 55666654 555554 899999999999999875432211100 0000111
Q ss_pred CCCC-CCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007917 505 VIKN-WDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 559 (585)
Q Consensus 505 ~~~~-~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~-~~~gp~vIeV~v~ 559 (585)
.+.. +|...+++.+-- ...++++++++..++++|+. . ...||+.|||..|
T Consensus 128 ~~qe~~d~~~~~~~vtk-----~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~D 181 (569)
T PRK08327 128 WTQEMRDQGGLVREYVK-----WDYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPRE 181 (569)
T ss_pred cchhhhhHHHHHhhhhh-----hhcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHH
Confidence 1233 588888888876 78899999999999999876 2 2468999999966
No 242
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=90.97 E-value=1.2 Score=49.67 Aligned_cols=103 Identities=20% Similarity=0.194 Sum_probs=71.8
Q ss_pred hHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHh
Q 007917 444 SVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAI 518 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 518 (585)
+.-+|-|.+... +++.+|++ |=|... .+..|...+.|+++|.-.=..... .. ..+..+|-..+.+.+
T Consensus 53 A~~~Adgyar~t-g~~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~G~~~~~~~----~~---~~~q~~d~~~~~~~~ 124 (563)
T PRK08527 53 AVHAADGYARAS-GKVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLISGQVPNSLI----GT---DAFQEIDAVGISRPC 124 (563)
T ss_pred HHHHHHHHHhhh-CCCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecCCCcccc----CC---CCCcccchhhhhhcc
Confidence 556788888765 45666555 555555 888899999999888742221111 01 113446777788887
Q ss_pred cCCCCCccEEEecCHHHHHHHHHHhhh-c--CCCCeEEEEEEcC
Q 007917 519 HNGEGKCWTAKVRSEDELTEAMKTATG-E--QKDSLCFIEVFVH 559 (585)
Q Consensus 519 G~~~~~~~~~~v~~~~eL~~al~~a~~-~--~~~gp~vIeV~v~ 559 (585)
-- ...+|++++++..+|++|+. . ...||+.|+|..|
T Consensus 125 tk-----~s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~D 163 (563)
T PRK08527 125 VK-----HNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKD 163 (563)
T ss_pred cc-----eEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence 65 78889999999999999886 2 2348999999976
No 243
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=90.85 E-value=1.9 Score=39.54 Aligned_cols=94 Identities=19% Similarity=0.122 Sum_probs=60.7
Q ss_pred hHHHHHHHhhhcCCCcEEEEEcCchhH-----hH-HHHHH--------hCCCeEEEEEeCCceeeeeeecCCCCCCCCCC
Q 007917 444 SVGATLGYAQAAKDKRVIACIGDGSFQ-----EI-STMIR--------CGQRSIIFLINNGGYTIEVEIHDGPYNVIKNW 509 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v~GDGsf~-----eL-~ta~~--------~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~ 509 (585)
.++.|.|.++. ++++++-+.=+.|+ .| ..+.. .++|++++. ..++++. ++.. +..
T Consensus 56 ~vg~AaGlA~~--G~~pi~~~~~a~Fl~ra~dQi~~~~a~~~~~~~~~~~~pv~i~~-~~gg~~~-----~G~t---hs~ 124 (167)
T cd07036 56 IVGLAVGAAMN--GLRPIVEIMFADFALPAFDQIVNEAAKLRYMSGGQFKVPIVIRG-PNGGGIG-----GGAQ---HSQ 124 (167)
T ss_pred HHHHHHHHHHc--CCEEEEEeehHHHHHHHHHHHHHHHHHHHHhcCCCccCCEEEEE-eCCCCCC-----cChh---hhh
Confidence 56777887774 45566554555666 22 12222 258888876 5665442 2222 233
Q ss_pred CHHHHHHHh-cCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEE
Q 007917 510 DYTGLVNAI-HNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIE 555 (585)
Q Consensus 510 d~~~la~a~-G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIe 555 (585)
.+..+.+++ |. ..+...++.|++..++.+++ .++|+++-
T Consensus 125 ~~~a~lr~iPg~-----~V~~Psd~~e~~~~l~~~~~--~~~P~~~~ 164 (167)
T cd07036 125 SLEAWFAHIPGL-----KVVAPSTPYDAKGLLKAAIR--DDDPVIFL 164 (167)
T ss_pred hHHHHHhcCCCC-----EEEeeCCHHHHHHHHHHHHh--CCCcEEEE
Confidence 445677777 44 77778899999999999996 77898873
No 244
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=90.84 E-value=1.2 Score=40.67 Aligned_cols=106 Identities=20% Similarity=0.130 Sum_probs=61.7
Q ss_pred HHhhhhhhhhcC-c-cEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCcc--------ceeeccCCCChHH
Q 007917 78 GYAADGYARSRG-V-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNR--------ILHHTIGLPDFTQ 147 (585)
Q Consensus 78 ~~~A~gyar~tg-~-~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~--------~~~~~~~~~~~~d 147 (585)
.-+|.|.+.+.. + .+|++-=| ++...+.++..|...+.|+++|.-+.......+.. ..+... ...|
T Consensus 52 ~~~a~Gaa~a~~~~~vv~~~GDG-~~~~~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~---~~~d 127 (168)
T cd00568 52 LPAAIGAALAAPDRPVVCIAGDG-GFMMTGQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDL---SNPD 127 (168)
T ss_pred HHHHHHHHHhCCCCcEEEEEcCc-HHhccHHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccC---CCCC
Confidence 446677776663 3 44443222 33336788888989999999998876543221100 000011 1235
Q ss_pred HHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCCcEEEEec
Q 007917 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISIS 191 (585)
Q Consensus 148 ~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP 191 (585)
..++++.+--...++.+++++ ++|++.+....||+.|++.
T Consensus 128 ~~~~a~~~G~~~~~v~~~~~l----~~a~~~a~~~~~p~~i~v~ 167 (168)
T cd00568 128 FAALAEAYGAKGVRVEDPEDL----EAALAEALAAGGPALIEVK 167 (168)
T ss_pred HHHHHHHCCCeEEEECCHHHH----HHHHHHHHhCCCCEEEEEE
Confidence 567777765556677775555 5555555566899999875
No 245
>PRK06154 hypothetical protein; Provisional
Probab=90.84 E-value=1.8 Score=48.19 Aligned_cols=113 Identities=16% Similarity=0.170 Sum_probs=75.3
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcC-CCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAK-DKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPY 503 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p-~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~ 503 (585)
.+++....-.+ +.-+|-|.+.+.. +++.+|++ |=|... .|.+|...+.|+++|.-....... +..
T Consensus 55 i~~i~~rhE~~---A~~mAdgyar~t~g~~~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~i~G~~~~~~~------~~~ 125 (565)
T PRK06154 55 IRPVIARTERV---AVHMADGYARATSGERVGVFAVQYGPGAENAFGGVAQAYGDSVPVLFLPTGYPRGST------DVA 125 (565)
T ss_pred CeEEeeCcHHH---HHHHHHHHHHhcCCCCCEEEEECCCccHHHHHHHHHHHhhcCCCEEEEeCCCCcccc------cCC
Confidence 44554443332 3356777777653 46777754 666665 999999999999999754432111 000
Q ss_pred CCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007917 504 NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 559 (585)
Q Consensus 504 ~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~-~~~gp~vIeV~v~ 559 (585)
...|...+++.+-- ...+|++++++.+.+++|+. . ...||+.|+|..|
T Consensus 126 ---~~~d~~~~~~~vtk-----~~~~v~~~~~~~~~i~~A~~~A~s~~~GPV~l~iP~D 176 (565)
T PRK06154 126 ---PNFESLRNYRHITK-----WCEQVTLPDEVPELMRRAFTRLRNGRPGPVVLELPVD 176 (565)
T ss_pred ---CCcchhhhHhhcce-----eEEECCCHHHHHHHHHHHHHHHhcCCCceEEEecchH
Confidence 11355567777665 78889999999988888876 2 2468999999977
No 246
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=90.83 E-value=0.46 Score=52.02 Aligned_cols=78 Identities=23% Similarity=0.325 Sum_probs=52.9
Q ss_pred cccccchHHHHHHHhhhcCCCcEEEEEcCc-hhH-hHHHHHHh---------CCCeEEEEEeCCceeeeeeecCCCCCCC
Q 007917 438 YGSIGWSVGATLGYAQAAKDKRVIACIGDG-SFQ-EISTMIRC---------GQRSIIFLINNGGYTIEVEIHDGPYNVI 506 (585)
Q Consensus 438 ~g~mG~~lpaAiGaalA~p~~~vv~v~GDG-sf~-eL~ta~~~---------~lpv~ivV~NN~~~~~~~~~~~~~~~~~ 506 (585)
.|-+||+++-|.||++-+|+.-+.|++||| +-. -+.|...- +-=+-|+++ +||.|+. ...+...
T Consensus 152 GGeLGy~l~ha~gAa~d~Pdli~~~vvGDGeaetgplatsWhs~kf~np~~dGavLPIL~l--NGykI~n---pT~lar~ 226 (793)
T COG3957 152 GGELGYALSHAYGAAFDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPARDGAVLPILHL--NGYKIEN---PTVLARI 226 (793)
T ss_pred CcchhHHHHHHHHhhcCCCCcEEEEEecccccccCccccccccccccCccccCceeeEEEe--cceeccC---ceeeeec
Confidence 478999999999999999999999999999 444 55555432 111223334 4677621 1122334
Q ss_pred CCCCHHHHHHHhcC
Q 007917 507 KNWDYTGLVNAIHN 520 (585)
Q Consensus 507 ~~~d~~~la~a~G~ 520 (585)
+.-++.++-+++|.
T Consensus 227 s~~el~~~f~G~Gy 240 (793)
T COG3957 227 SDEELKALFEGYGY 240 (793)
T ss_pred ChHHHHHHHhhCCC
Confidence 55678888888887
No 247
>PRK05899 transketolase; Reviewed
Probab=90.77 E-value=2.4 Score=47.77 Aligned_cols=116 Identities=19% Similarity=0.133 Sum_probs=75.8
Q ss_pred eEE-ecCchhhHHHhhhhhhhhcCccEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCCh
Q 007917 67 NLV-GCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDF 145 (585)
Q Consensus 67 ~~i-~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~ 145 (585)
|++ ...-|++++.+|.|+|...+.-.++.|..+=+.-++..+..+...+.|++++....... .+.+..- ||.
T Consensus 368 R~~d~GIaE~~~vg~A~GlA~~G~~~pv~~t~~~F~~r~~~qir~~~~~~~pv~~v~~~~G~~-~g~~G~t------Hq~ 440 (624)
T PRK05899 368 RYIHYGVREFAMAAIANGLALHGGFIPFGGTFLVFSDYARNAIRLAALMKLPVIYVFTHDSIG-VGEDGPT------HQP 440 (624)
T ss_pred CeeeeChhHHHHHHHHHHHHHcCCCeEEEEEcHHHHHHHHHHHHHHHhcCCCEEEEEECCCcC-cCCCCCC------ccc
Confidence 555 47899999999999998663533334445545557777777777899998887543332 2221122 334
Q ss_pred HHHHHHhhhceeEE-EEecCcchhHHHHHHHHHHhhhc-CCcEEEEecCC
Q 007917 146 TQELRCFQAITCSQ-AVVNNLGDAHELIDTAISTALKE-SKPVYISISCN 193 (585)
Q Consensus 146 ~d~~~~~~~~~k~~-~~v~~~~~~~~~l~~A~~~a~~~-~gPV~i~iP~d 193 (585)
..+..+++.+.... ....++.++..+++.|+ .. ++||+|.+|..
T Consensus 441 ~edia~~r~iP~~~V~~P~d~~e~~~~l~~a~----~~~~~P~~ir~~r~ 486 (624)
T PRK05899 441 VEQLASLRAIPNLTVIRPADANETAAAWKYAL----ERKDGPSALVLTRQ 486 (624)
T ss_pred HHHHHHHHhCCCcEEEeCCCHHHHHHHHHHHH----HcCCCCEEEEEeCC
Confidence 55677888775543 44556666666666555 44 69999999864
No 248
>PRK05858 hypothetical protein; Provisional
Probab=90.71 E-value=1.8 Score=47.90 Aligned_cols=114 Identities=11% Similarity=0.090 Sum_probs=76.4
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+.+. +++.+|++ |=|... .+.+|...+.|+++|.-+-....+ ..+.
T Consensus 43 i~~i~~rhE~~---A~~~AdGyar~t-g~~gv~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~g~~~~~~~----~~~~-- 112 (542)
T PRK05858 43 IRLIDVRHEQT---AAFAAEAWAKLT-RVPGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLGGRAPALRW----GMGS-- 112 (542)
T ss_pred CCEEeeccHHH---HHHHHHHHHHhc-CCCeEEEEcCCchHHHHHHHHHHHHhcCCCEEEEeCCCCcccC----CCCC--
Confidence 44555444332 446788888874 56777665 444443 889999999999977643221111 0111
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh-c--CCCCeEEEEEEcC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG-E--QKDSLCFIEVFVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~-~--~~~gp~vIeV~v~ 559 (585)
+..+|...+.+.+-- ...++++++++...+++|+. . ...||+.|+|..|
T Consensus 113 -~q~~d~~~l~~~~tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 164 (542)
T PRK05858 113 -LQEIDHVPFVAPVTK-----FAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMD 164 (542)
T ss_pred -Ccccchhhhhhhhhc-----eEEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChh
Confidence 233577788888876 88899999999998888876 1 2468999999976
No 249
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=90.66 E-value=4.5 Score=45.12 Aligned_cols=153 Identities=14% Similarity=0.168 Sum_probs=89.8
Q ss_pred ccHHHHHHHHHHHcCC--CEEEec-CCCC-hHHHHHhhh-cCCCCeEE-ecCchhhHHHhhhhhhhhcCc-cEEEEeCCc
Q 007917 27 GTLGRHLARRLVEIGA--KDVFSV-PGDF-NLTLLDHLI-AEPELNLV-GCCNELNAGYAADGYARSRGV-GACVVTFTV 99 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv--~~vFg~-PG~~-~~~l~~al~-~~~~i~~i-~~~~E~~A~~~A~gyar~tg~-~v~~~t~Gp 99 (585)
.+..+++.+.|.+..- ..++++ ++-. ...+-+ +. +.|+ |++ ...-|++++.+|.|.|. .|. .++.+ ..+
T Consensus 279 ~~~~~~~~~~L~~~~~~~~~vv~~~adl~~~~~~~~-f~~~~p~-R~i~~GIaE~~mvg~A~GlA~-~G~~p~~~~-f~~ 354 (580)
T PRK05444 279 PSYTKVFGETLCELAEKDPKIVAITAAMPEGTGLVK-FSKRFPD-RYFDVGIAEQHAVTFAAGLAT-EGLKPVVAI-YST 354 (580)
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEECCcCCCCCHHH-HHHHhhh-hccCCChHHHHHHHHHHHHHH-CCCeeEEEe-eHH
Confidence 4566777776665532 334443 2211 112222 32 2233 433 66789999999999999 455 55544 555
Q ss_pred chHHHHHHHHH-hhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEE-EEecCcchhHHHHHHHHH
Q 007917 100 GGLSVLNAIAG-AYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDTAIS 177 (585)
Q Consensus 100 G~~n~~~gl~~-A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~l~~A~~ 177 (585)
=+.-++.-+.+ +...+.||+++....... +.+..- |+...+..+++.+.-+. ....++.++..+++.|++
T Consensus 355 F~~ra~dQi~~~~a~~~~pv~~v~~~~G~~--g~dG~t------H~~~edia~lr~iP~l~V~~Psd~~e~~~~l~~a~~ 426 (580)
T PRK05444 355 FLQRAYDQVIHDVALQNLPVTFAIDRAGLV--GADGPT------HQGAFDLSYLRCIPNMVIMAPSDENELRQMLYTALA 426 (580)
T ss_pred HHHHHHHHHHHHhhhcCCCEEEEEeCCCcC--CCCCcc------ccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh
Confidence 44455665554 567899999997543321 221122 33345678888876544 445666666666555543
Q ss_pred HhhhcCCcEEEEecCCC
Q 007917 178 TALKESKPVYISISCNL 194 (585)
Q Consensus 178 ~a~~~~gPV~i~iP~dv 194 (585)
. .++||+|.+|...
T Consensus 427 ~---~~~P~~ir~~r~~ 440 (580)
T PRK05444 427 Y---DDGPIAIRYPRGN 440 (580)
T ss_pred C---CCCcEEEEecCCC
Confidence 1 2799999999765
No 250
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=90.59 E-value=0.85 Score=48.91 Aligned_cols=115 Identities=15% Similarity=0.148 Sum_probs=71.7
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|-|.+.+. +++.+|++ |=|... .|.+|...+.|+++|.-.-...... . .
T Consensus 39 i~~v~~~hE~~---A~~mAdgyar~t-g~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~g~~~~~~~~----~---~ 107 (432)
T TIGR00173 39 LRVHVHIDERS---AGFFALGLAKAS-GRPVAVVCTSGTAVANLLPAVIEASYSGVPLIVLTADRPPELRG----C---G 107 (432)
T ss_pred cEEEEecCCcc---HHHHHHHHHhcc-CCCEEEEECCcchHhhhhHHHHHhcccCCcEEEEeCCCCHHHhC----C---C
Confidence 34555444333 335677877764 56766665 444444 8888889999999987544322110 1 1
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHH------HHHHHHHhhh---cCCCCeEEEEEEcCC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDE------LTEAMKTATG---EQKDSLCFIEVFVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~e------L~~al~~a~~---~~~~gp~vIeV~v~~ 560 (585)
.+..+|...+.+.+-. ...+|.++++ +...+++|+. ....||+.|+|..|-
T Consensus 108 ~~q~~d~~~~~~~~tk-----~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv 167 (432)
T TIGR00173 108 ANQTIDQPGLFGSYVR-----WSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFRE 167 (432)
T ss_pred CCcccchhhHHhhccc-----eeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCC
Confidence 1234577778877765 6777887766 5555555554 124589999999774
No 251
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=90.47 E-value=1.5 Score=48.38 Aligned_cols=116 Identities=16% Similarity=0.215 Sum_probs=75.0
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|.|.+.+. +++.+|++ |=|... .+.+|...+.|+++|.-.-...... .+.+
T Consensus 49 i~~i~~~hE~~---A~~~Adgyar~t-g~~~v~~vt~gpG~~N~~~gia~A~~~~~Pvl~i~g~~~~~~~~----~~~~- 119 (530)
T PRK07092 49 FRYVLGLQEAV---VVGMADGYAQAT-GNAAFVNLHSAAGVGNAMGNLFTAFKNHTPLVITAGQQARSILP----FEPF- 119 (530)
T ss_pred CCEEEEccHHH---HHHHHHHHHHHh-CCceEEEeccCchHHHHHHHHHHHhhcCCCEEEEecCCcccccC----ccch-
Confidence 44554444333 335788888875 56777765 444444 9999999999999777532211110 0111
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--c-CCCCeEEEEEEcCC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~-~~~gp~vIeV~v~~ 560 (585)
....|...+.+.+-- ...++++++++...+++|+. . ...||+.|++..|-
T Consensus 120 -~~~~d~~~l~~~~tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d~ 172 (530)
T PRK07092 120 -LAAVQAAELPKPYVK-----WSIEPARAEDVPAAIARAYHIAMQPPRGPVFVSIPYDD 172 (530)
T ss_pred -hcccCHHHhhccccc-----ceeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEccHHH
Confidence 123577777777754 67788999998888888875 1 23589999999763
No 252
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=90.24 E-value=12 Score=38.80 Aligned_cols=153 Identities=15% Similarity=0.088 Sum_probs=83.9
Q ss_pred cccHHHHHHHHHHHcCC--CEEEecCCCC-----hHHHHHhhh-cCCCCeEE-ecCchhhHHHhhhhhhhhcCccEEEEe
Q 007917 26 VGTLGRHLARRLVEIGA--KDVFSVPGDF-----NLTLLDHLI-AEPELNLV-GCCNELNAGYAADGYARSRGVGACVVT 96 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv--~~vFg~PG~~-----~~~l~~al~-~~~~i~~i-~~~~E~~A~~~A~gyar~tg~~v~~~t 96 (585)
.++..+++.+.|.+..- +.|+.+..+- .....+.+. +...=|++ ..-.|++++.+|.|.|....+.++...
T Consensus 26 ~~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIAEq~~vg~AaGlA~~G~~P~v~~~ 105 (356)
T PLN02683 26 EMTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPITEAGFTGIGVGAAYAGLKPVVEFM 105 (356)
T ss_pred ccHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchhHHHHHHHHHHHHHCCCEEEEEEe
Confidence 46777777777776643 3555554431 112222222 22123555 567999999999999997556554332
Q ss_pred CCcchHHHHHHHHH-hhhcC--------CcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEE-EEecCcc
Q 007917 97 FTVGGLSVLNAIAG-AYSEN--------LPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVVNNLG 166 (585)
Q Consensus 97 ~GpG~~n~~~gl~~-A~~~~--------~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~~~ 166 (585)
..--...++.-|.+ +...+ .||+++..+ ... .+.+ .-| +..+ ..+++.+.-.. ....++.
T Consensus 106 ~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~-~g~G-~tH------~~~~-~a~lr~iPnl~V~~Pad~~ 175 (356)
T PLN02683 106 TFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAA-AGVG-AQH------SQCF-AAWYSSVPGLKVLAPYSSE 175 (356)
T ss_pred hhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCC-CCCC-Ccc------ccCH-HHHHhcCCCCEEEEeCCHH
Confidence 22222344444432 22233 899888644 221 2221 112 1123 58888875544 3345666
Q ss_pred hhHHHHHHHHHHhhhcCCcEEEEecC
Q 007917 167 DAHELIDTAISTALKESKPVYISISC 192 (585)
Q Consensus 167 ~~~~~l~~A~~~a~~~~gPV~i~iP~ 192 (585)
++..+++.|+ ..+|||+|..+.
T Consensus 176 e~~~~l~~a~----~~~gPv~ir~~~ 197 (356)
T PLN02683 176 DARGLLKAAI----RDPDPVVFLENE 197 (356)
T ss_pred HHHHHHHHHH----hCCCcEEEEEeh
Confidence 6666665554 446999998643
No 253
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=90.11 E-value=1.5 Score=48.91 Aligned_cols=103 Identities=13% Similarity=0.113 Sum_probs=70.1
Q ss_pred hHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHh
Q 007917 444 SVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAI 518 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 518 (585)
+.-+|-|.+.+. +++.+|++ |=|... .+.+|...+.|+++|.-.=....+ .. ..+...|...+.+.+
T Consensus 53 A~~mAdgyar~t-gk~~v~~v~~GpG~~N~~~gl~~A~~~~~Pvl~I~G~~~~~~~----~~---~~~Qe~d~~~l~~~~ 124 (578)
T PRK06546 53 AAFAAAAEAQLT-GKLAVCAGSCGPGNLHLINGLYDAHRSGAPVLAIASHIPSAQI----GS---GFFQETHPDRLFVEC 124 (578)
T ss_pred HHHHHHhHHHhh-CCceEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcccc----CC---CCccccChhhhcccc
Confidence 335677777764 56777765 455555 889999999999888753221111 01 112345666777766
Q ss_pred cCCCCCccEEEecCHHHHHHHHHHhhh--cCCCCeEEEEEEcC
Q 007917 519 HNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVH 559 (585)
Q Consensus 519 G~~~~~~~~~~v~~~~eL~~al~~a~~--~~~~gp~vIeV~v~ 559 (585)
-- ..++|++++++...+++|+. ....||+.|++..|
T Consensus 125 tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~D 162 (578)
T PRK06546 125 SG-----YCEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGD 162 (578)
T ss_pred ee-----eEeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 54 78889999999988888876 33569999999976
No 254
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=90.10 E-value=4.8 Score=37.14 Aligned_cols=140 Identities=15% Similarity=0.031 Sum_probs=75.8
Q ss_pred EEecCCCChHHHHHhhhcCCCCeEEecCchhhHH---HhhhhhhhhcC-c-cEEEEeCCcchHHHHHHHHHhhhcCCcEE
Q 007917 45 VFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAG---YAADGYARSRG-V-GACVVTFTVGGLSVLNAIAGAYSENLPVI 119 (585)
Q Consensus 45 vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~---~~A~gyar~tg-~-~v~~~t~GpG~~n~~~gl~~A~~~~~Pll 119 (585)
++.=-|.........+.-...-+++.... .+-+ -+|.|.+.+.. + .+|++- .-+..-.+..+..|...+.|++
T Consensus 20 iv~d~g~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lp~aiGaala~~~~~vv~i~G-DG~f~~~~~el~ta~~~~~p~~ 97 (178)
T cd02002 20 IVDEAVTNGLPLRDQLPLTRPGSYFTLRG-GGLGWGLPAAVGAALANPDRKVVAIIG-DGSFMYTIQALWTAARYGLPVT 97 (178)
T ss_pred EEecCCcccHHHHHhcccCCCCCeeccCC-ccccchHHHHHHHHhcCCCCeEEEEEc-CchhhccHHHHHHHHHhCCCeE
Confidence 33333454444444443212346666655 4433 36778777663 3 343332 2233334578888888899999
Q ss_pred EEeCCCCCccCCCc-------------cceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCCcE
Q 007917 120 CIVGGPNSNDYGTN-------------RILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPV 186 (585)
Q Consensus 120 ~I~g~~~~~~~~~~-------------~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV 186 (585)
+|.-+......-+. ........ ....|..++++.+--...++.+++++.+.+++|+ ..++|+
T Consensus 98 ~iV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~----~~~~p~ 172 (178)
T cd02002 98 VVILNNRGYGALRSFLKRVGPEGPGENAPDGLDLL-DPGIDFAAIAKAFGVEAERVETPEELDEALREAL----AEGGPA 172 (178)
T ss_pred EEEEcCccHHHHHHHHHHHcCCCcccccccccccC-CCCCCHHHHHHHcCCceEEeCCHHHHHHHHHHHH----hCCCCE
Confidence 99887653211100 00000000 0113556777777555677888666555555554 457999
Q ss_pred EEEec
Q 007917 187 YISIS 191 (585)
Q Consensus 187 ~i~iP 191 (585)
.|++.
T Consensus 173 vi~v~ 177 (178)
T cd02002 173 LIEVV 177 (178)
T ss_pred EEEEE
Confidence 99874
No 255
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=90.06 E-value=1.5 Score=44.33 Aligned_cols=111 Identities=21% Similarity=0.101 Sum_probs=70.7
Q ss_pred hhhhhhhhc---Cc-cEEEEeCCcchHHH---HHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHh
Q 007917 80 AADGYARSR---GV-GACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCF 152 (585)
Q Consensus 80 ~A~gyar~t---g~-~v~~~t~GpG~~n~---~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 152 (585)
+|.|.+.+. +. .++++..|=|+++. .-++..|...+.|+|+|.-+.... .... .+.... ..+...+.
T Consensus 112 ~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~~~-i~~~--~~~~~~---~~~~~~~a 185 (293)
T cd02000 112 LAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYA-ISTP--TSRQTA---GTSIADRA 185 (293)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCCee-ccCC--HHHHhC---CccHHHHH
Confidence 445555443 33 67777778887763 367888999999999999765322 1111 000111 12344556
Q ss_pred hhceeEEEEec--CcchhHHHHHHHHHHhhhcCCcEEEEecCCCCC
Q 007917 153 QAITCSQAVVN--NLGDAHELIDTAISTALKESKPVYISISCNLPG 196 (585)
Q Consensus 153 ~~~~k~~~~v~--~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~~ 196 (585)
+.+--...++. +++++.+.+++|++.+....||+.|++-.+-..
T Consensus 186 ~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~ 231 (293)
T cd02000 186 AAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLG 231 (293)
T ss_pred HhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccC
Confidence 65544455665 456888889999998888789999999766543
No 256
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=90.00 E-value=25 Score=36.10 Aligned_cols=238 Identities=17% Similarity=0.123 Sum_probs=117.8
Q ss_pred ccHHHHHHHHHHHcCC--CEEEecCCCCh-----HHHHHhhhc-C-CCCeEE-ecCchhhHHHhhhhhhhhcCccEEEEe
Q 007917 27 GTLGRHLARRLVEIGA--KDVFSVPGDFN-----LTLLDHLIA-E-PELNLV-GCCNELNAGYAADGYARSRGVGACVVT 96 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv--~~vFg~PG~~~-----~~l~~al~~-~-~~i~~i-~~~~E~~A~~~A~gyar~tg~~v~~~t 96 (585)
++..+++.+.|.+..- +.++.+..+-. ..+.+.+.+ . |+ |++ ...-|++++.+|.|.|....+.+|...
T Consensus 4 ~~~~~a~~~~L~~~~~~d~~iv~l~~d~~~~~g~~~~~~~~~~~fgp~-R~~d~gIaE~~~vg~AaGlA~~G~~Piv~~~ 82 (327)
T PRK09212 4 LTVREALRDAMQEEMERDPKVFLMGEEVGEYQGAYKVTQGLLEQFGPK-RVIDTPITEHGFAGLAVGAAFAGLRPIVEFM 82 (327)
T ss_pred chHHHHHHHHHHHHHHhCCCEEEEcCcccccCCcchhhHHHHHHhCCC-ceeecchhHHHHHHHHHHHHHcCCeeEEEee
Confidence 4555666655555532 34444433311 111333332 2 33 555 567999999999999995445665433
Q ss_pred CCcchHHHHHHHHH--hhh-------cCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEE-EecCcc
Q 007917 97 FTVGGLSVLNAIAG--AYS-------ENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQA-VVNNLG 166 (585)
Q Consensus 97 ~GpG~~n~~~gl~~--A~~-------~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~-~v~~~~ 166 (585)
+..-...++.-|.+ |+. .++||++...+-+....|. -|+ +..+ ++++.+.-... ...++.
T Consensus 83 ~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~~G~---tH~-----~~~e--a~~r~iP~l~V~~P~d~~ 152 (327)
T PRK09212 83 TFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAARVAA---QHS-----QCYA--AWYSHIPGLKVVAPYFAA 152 (327)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCCCCc---ccc-----cCHH--HHHhcCCCCEEEeeCCHH
Confidence 22222233333221 333 2689888765432221111 121 2232 88887755443 345677
Q ss_pred hhHHHHHHHHHHhhhcCCcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCccc
Q 007917 167 DAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNI 246 (585)
Q Consensus 167 ~~~~~l~~A~~~a~~~~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~ 246 (585)
++..+++.|++ .++||+|..|........+... ...+.... + ++.++ ...-+.|++.|.
T Consensus 153 e~~~~l~~a~~----~~~Pv~i~~~~~~~~~~~~~~~-~~~~~~~G--------------k-~~vl~-~G~di~iva~G~ 211 (327)
T PRK09212 153 DCKGLLKTAIR----DPNPVIFLENEILYGHSHEVPE-EEESIPIG--------------K-AAILR-EGSDVTIVTFSI 211 (327)
T ss_pred HHHHHHHHHHh----CCCcEEEEEchhhcCCCCCCCC-CCccccCC--------------e-eEEEE-eCCCEEEEEccH
Confidence 77777776663 3799999776543221001100 00000000 0 01122 235677777777
Q ss_pred chhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCC
Q 007917 247 RVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGP 311 (585)
Q Consensus 247 ~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~ 311 (585)
....+.++.+.|.+ -|+.+-.= . +..=.|+ -.....+.+++++.|+++-.
T Consensus 212 ~~~~a~eAa~~L~~-~Gi~v~vi-~----~~~l~Pl---------d~~~i~~~~~~~~~vv~vEe 261 (327)
T PRK09212 212 QVKLALEAAELLEK-EGISVEVI-D----LRTLRPL---------DTETIIESVKKTNRLVVVEE 261 (327)
T ss_pred HHHHHHHHHHHHHh-cCCcEEEE-E----EecCCCC---------CHHHHHHHHHhCCeEEEEcC
Confidence 66556666666644 24332210 0 1111122 22345677788888888853
No 257
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=89.84 E-value=4.9 Score=37.83 Aligned_cols=157 Identities=18% Similarity=0.070 Sum_probs=82.7
Q ss_pred cHHHHHHHHHHHcCC---CE-EEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcC-c-cEEEEeCCcch
Q 007917 28 TLGRHLARRLVEIGA---KD-VFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-V-GACVVTFTVGG 101 (585)
Q Consensus 28 ~~a~~i~~~L~~~Gv---~~-vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg-~-~v~~~t~GpG~ 101 (585)
..-+++.+.+.+.|+ +. ++.=-|. .. +.+ +.-.+....... ..+.-+|.|.+.+.. + .++++ |=|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~d~ii~~D~G~-~~--~~~--~~~~~~~~~g~m-G~glpaAiGa~la~p~r~Vv~i~--GDGs 80 (193)
T cd03375 9 SILKALAKALAELGIDPEKVVVVSGIGC-SS--RLP--YYFNTYGFHTLH-GRALAVATGVKLANPDLTVIVVS--GDGD 80 (193)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCCh-hc--eeh--hhccccchhhhh-ccHHHHHHHHHHhCCCCeEEEEe--ccch
Confidence 345777888888876 34 3333333 22 111 010121111111 223447788777764 3 44443 4443
Q ss_pred --HHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccce---------eec-cCCC-ChHHHHHHhhhc-eeEE--EEecCc
Q 007917 102 --LSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRIL---------HHT-IGLP-DFTQELRCFQAI-TCSQ--AVVNNL 165 (585)
Q Consensus 102 --~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~---------~~~-~~~~-~~~d~~~~~~~~-~k~~--~~v~~~ 165 (585)
.-.+..+..|...++|+++|.-+......-++... +.. .+.. ...|...+.+.+ .++. .++.++
T Consensus 81 ~f~m~~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~ 160 (193)
T cd03375 81 LAAIGGNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDI 160 (193)
T ss_pred HhhccHHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCH
Confidence 23468888999999999999887654322111000 000 0000 012445666665 3333 357777
Q ss_pred chhHHHHHHHHHHhhhcCCcEEEEecCCCCC
Q 007917 166 GDAHELIDTAISTALKESKPVYISISCNLPG 196 (585)
Q Consensus 166 ~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~~ 196 (585)
+++.+.+++|+ ..+||+.|++..+-+.
T Consensus 161 ~el~~al~~al----~~~gp~vIev~~~C~~ 187 (193)
T cd03375 161 KQLKEIIKKAI----QHKGFSFVEVLSPCPT 187 (193)
T ss_pred HHHHHHHHHHH----hcCCCEEEEEECCCCC
Confidence 66666666655 4589999999876543
No 258
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=89.79 E-value=2.9 Score=37.85 Aligned_cols=98 Identities=20% Similarity=0.261 Sum_probs=59.8
Q ss_pred hHHHHHHHhhhcCCCcEEEEEcCchhH-----hHH-HHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHH
Q 007917 444 SVGATLGYAQAAKDKRVIACIGDGSFQ-----EIS-TMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNA 517 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v~GDGsf~-----eL~-ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a 517 (585)
.++.|.|.++. .-++++... ..|. .|. .+...++|+++++- .++++.. .++... ...+...+.+.
T Consensus 51 ~vg~A~GlA~~-G~~pi~~~~--~~f~~ra~dqi~~~~a~~~~pv~~~~~-~~g~~~~---~~G~tH--~~~~~~a~~~~ 121 (156)
T cd07033 51 MVGIAAGLALH-GLKPFVSTF--SFFLQRAYDQIRHDVALQNLPVKFVGT-HAGISVG---EDGPTH--QGIEDIALLRA 121 (156)
T ss_pred HHHHHHHHHHC-CCeEEEEEC--HHHHHHHHHHHHHHHhccCCCeEEEEE-CCcEecC---CCCccc--chHHHHHHhcC
Confidence 45667788775 345555555 5555 555 56678899877554 5544430 022110 12233444444
Q ss_pred hcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEE
Q 007917 518 IHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEV 556 (585)
Q Consensus 518 ~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV 556 (585)
+-. ++-+...+++|++..++++++ .++|++|-+
T Consensus 122 iPg----~~v~~Ps~~~~~~~ll~~a~~--~~~P~~irl 154 (156)
T cd07033 122 IPN----MTVLRPADANETAAALEAALE--YDGPVYIRL 154 (156)
T ss_pred CCC----CEEEecCCHHHHHHHHHHHHh--CCCCEEEEe
Confidence 422 377778899999999999996 667998854
No 259
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=89.76 E-value=3.8 Score=40.91 Aligned_cols=156 Identities=14% Similarity=0.008 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHcCC---CEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcC-c-cEEEEeCCcchHH
Q 007917 29 LGRHLARRLVEIGA---KDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-V-GACVVTFTVGGLS 103 (585)
Q Consensus 29 ~a~~i~~~L~~~Gv---~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg-~-~v~~~t~GpG~~n 103 (585)
+-.+|-+.|.+.|+ +.|+...-+... ..-... ......+.| ..+.-+|.|...+.. + .++++-=|-++.-
T Consensus 18 il~al~~al~~l~~~~~~~ivvsdiGc~~-~~~~~~---~~~~~~~~~-G~alp~A~GaklA~Pd~~VV~i~GDG~~f~i 92 (279)
T PRK11866 18 ILEALRKALAELGIPPENVVVVSGIGCSS-NLPEFL---NTYGIHGIH-GRVLPIATGVKWANPKLTVIGYGGDGDGYGI 92 (279)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCchhh-hhhhhc---cCCCccccc-ccHHHHHHHHHHHCCCCcEEEEECChHHHHc
Confidence 34667777888765 345544433333 222121 233446667 666778889887764 3 4444433334566
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCccCCCccce------ee----ccCCCC-hHHHHHHhhhce-eEEEEe--cCcchhH
Q 007917 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRIL------HH----TIGLPD-FTQELRCFQAIT-CSQAVV--NNLGDAH 169 (585)
Q Consensus 104 ~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~------~~----~~~~~~-~~d~~~~~~~~~-k~~~~v--~~~~~~~ 169 (585)
.++.+..|...++|+++|.-+......-+++.. +. ..+..+ -.|...+.+.+- .|..+. .++++
T Consensus 93 g~~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~-- 170 (279)
T PRK11866 93 GLGHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKH-- 170 (279)
T ss_pred cHHHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHH--
Confidence 789999999999999999876543321111000 00 011100 024455665542 233222 34444
Q ss_pred HHHHHHHHHhhhcCCcEEEEecCC
Q 007917 170 ELIDTAISTALKESKPVYISISCN 193 (585)
Q Consensus 170 ~~l~~A~~~a~~~~gPV~i~iP~d 193 (585)
+.++++.|...+||.+|++-..
T Consensus 171 --l~~~l~~Al~~~Gps~I~v~~p 192 (279)
T PRK11866 171 --LKEIIKEAIKHKGFSFIDVLSP 192 (279)
T ss_pred --HHHHHHHHHhCCCCEEEEEeCC
Confidence 4555555556689999987533
No 260
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=89.53 E-value=1.7 Score=44.43 Aligned_cols=111 Identities=17% Similarity=0.174 Sum_probs=69.5
Q ss_pred hhhhhhhhc---Cc-cEEEEeCCcchHH---HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHh
Q 007917 80 AADGYARSR---GV-GACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCF 152 (585)
Q Consensus 80 ~A~gyar~t---g~-~v~~~t~GpG~~n---~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 152 (585)
.|.|.+.+. +. .++++..|=|.++ ...++.-|...+.|+|+|.-+.... ..+. .++... ..+...+.
T Consensus 118 ~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~yg-~s~~--~~~~~~---~~~~a~~A 191 (315)
T TIGR03182 118 LATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYA-MGTS--VERSSS---VTDLYKRG 191 (315)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCCcc-ccCC--HHHHhC---CcCHHHHH
Confidence 355555544 33 6777778887775 2345666778899999998875321 1110 000111 11334455
Q ss_pred hhceeEEEEecC--cchhHHHHHHHHHHhhhcCCcEEEEecCCCCC
Q 007917 153 QAITCSQAVVNN--LGDAHELIDTAISTALKESKPVYISISCNLPG 196 (585)
Q Consensus 153 ~~~~k~~~~v~~--~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~~ 196 (585)
+.+--...+|.. +.++.+.+++|++.+...+||+.|++-..-..
T Consensus 192 ~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~ 237 (315)
T TIGR03182 192 ESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFR 237 (315)
T ss_pred HhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCC
Confidence 555444556664 56778889999999988889999999766543
No 261
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=88.79 E-value=12 Score=40.40 Aligned_cols=148 Identities=16% Similarity=0.103 Sum_probs=84.8
Q ss_pred CcccHHHHHHHHHHHcCC--CEEEecCC-----CC----hHHHHHhhhcCCCCeEE-ecCchhhHHHhhhhhhhhcCccE
Q 007917 25 SVGTLGRHLARRLVEIGA--KDVFSVPG-----DF----NLTLLDHLIAEPELNLV-GCCNELNAGYAADGYARSRGVGA 92 (585)
Q Consensus 25 ~~~~~a~~i~~~L~~~Gv--~~vFg~PG-----~~----~~~l~~al~~~~~i~~i-~~~~E~~A~~~A~gyar~tg~~v 92 (585)
..++..+++.+.|.+..- +.||.+-. .. ...|.+.+. + =|++ ....|++++.+|.|.|....+.+
T Consensus 140 ~~~~~r~a~~~al~~~~~~d~~vv~i~~Dv~~~~ga~~~t~~l~~~fg--p-~R~id~gIaEq~~vg~AaGlA~~G~rPi 216 (464)
T PRK11892 140 VTMTVREALRDAMAEEMRRDEDVFVMGEEVAEYQGAYKVTQGLLQEFG--A-RRVIDTPITEHGFAGIGVGAAFAGLKPI 216 (464)
T ss_pred cchHHHHHHHHHHHHHHhhCcCEEEEeCCccccCCccccchHHHHHhC--c-cceeecCccHHHHHHHHHHHHhCCCEEE
Confidence 345677777777766643 23444432 11 234555442 1 2455 56799999999999999644565
Q ss_pred EEEeCCcchHHHHHHHHH-hh--------hcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEE-EEe
Q 007917 93 CVVTFTVGGLSVLNAIAG-AY--------SENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVV 162 (585)
Q Consensus 93 ~~~t~GpG~~n~~~gl~~-A~--------~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~-~~v 162 (585)
|-..+.--+..++.-|.+ +. ..+.||++...+-+... .+ -||+ .+...+++.+.-.. ...
T Consensus 217 v~~~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~--~G--~hhs------~~d~a~~~~iPgl~V~~P 286 (464)
T PRK11892 217 VEFMTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAAR--VA--AQHS------QDYAAWYSHIPGLKVVAP 286 (464)
T ss_pred EEEehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCC--CC--Cccc------cCHHHHHhhCCCCEEEEe
Confidence 533222222344444432 23 56799999865443321 11 1443 23468888875543 234
Q ss_pred cCcchhHHHHHHHHHHhhhcCCcEEEE
Q 007917 163 NNLGDAHELIDTAISTALKESKPVYIS 189 (585)
Q Consensus 163 ~~~~~~~~~l~~A~~~a~~~~gPV~i~ 189 (585)
.++.++..+++.|+ ..++||++.
T Consensus 287 ~d~~d~~~ll~~ai----~~~~Pv~il 309 (464)
T PRK11892 287 YSAADAKGLLKAAI----RDPNPVIFL 309 (464)
T ss_pred CCHHHHHHHHHHHh----hCCCcEEEE
Confidence 56777777776665 347999984
No 262
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=88.70 E-value=19 Score=33.26 Aligned_cols=123 Identities=14% Similarity=0.043 Sum_probs=69.4
Q ss_pred CeEEecCchhh---HHHhhhhhhhhc-Cc-cEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCcc---cee
Q 007917 66 LNLVGCCNELN---AGYAADGYARSR-GV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNR---ILH 137 (585)
Q Consensus 66 i~~i~~~~E~~---A~~~A~gyar~t-g~-~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~---~~~ 137 (585)
-+++....=.+ +.-+|.|.+.+. ++ .++++-=|.-..+ ...+..+...++|+++|.-+.......+.. ...
T Consensus 42 ~~~~~~~~~g~mG~~~~~aiGa~~a~~~~~vv~i~GDG~f~~~-~~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~ 120 (178)
T cd02014 42 QRFILSGLLATMGNGLPGAIAAKLAYPDRQVIALSGDGGFAML-MGDLITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQ 120 (178)
T ss_pred CcEEcCCCCchhhhHHHHHHHHHHhCCCCcEEEEEcchHHHhh-HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcC
Confidence 44554433233 344667766555 34 5555544443444 677888999999999998876543211000 000
Q ss_pred eccCC-CChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCC
Q 007917 138 HTIGL-PDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (585)
Q Consensus 138 ~~~~~-~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~d 193 (585)
...+. ....|..++.+.+--...++.+++++.+.+++ +....+|+.|++..|
T Consensus 121 ~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~~l~~----a~~~~~p~liev~~~ 173 (178)
T cd02014 121 PEFGVDLPNPDFAKIAEAMGIKGIRVEDPDELEAALDE----ALAADGPVVIDVVTD 173 (178)
T ss_pred CceeccCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHH----HHhCCCCEEEEEEeC
Confidence 00110 01124566777765456678887766555554 444579999999865
No 263
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=88.58 E-value=3.7 Score=46.29 Aligned_cols=151 Identities=16% Similarity=0.195 Sum_probs=93.0
Q ss_pred ccHHHHHHHHHHHcC--CCEEEec----CCCChHHHHHhhhc-CCCCeEE-ecCchhhHHHhhhhhhhhcCc-cEEEEeC
Q 007917 27 GTLGRHLARRLVEIG--AKDVFSV----PGDFNLTLLDHLIA-EPELNLV-GCCNELNAGYAADGYARSRGV-GACVVTF 97 (585)
Q Consensus 27 ~~~a~~i~~~L~~~G--v~~vFg~----PG~~~~~l~~al~~-~~~i~~i-~~~~E~~A~~~A~gyar~tg~-~v~~~t~ 97 (585)
.+..+++.+.|.+.. -..|+++ +|+. . ++.+.+ .++ |++ ...-|++++.+|.|.|. .|. .++.+ .
T Consensus 319 ~~~~~~f~~~L~~la~~d~~iv~isadl~~~~--~-~~~f~~~~p~-R~id~GIaE~~mvg~AaGlA~-~G~~P~v~~-f 392 (641)
T PRK12571 319 PSYTSVFGEELTKEAAEDSDIVAITAAMPLGT--G-LDKLQKRFPN-RVFDVGIAEQHAVTFAAGLAA-AGLKPFCAV-Y 392 (641)
T ss_pred hhHHHHHHHHHHHHHhhCCCEEEEeCCccCCC--C-hHHHHHhCCC-cccccCccHHHHHHHHHHHHH-CCCEEEEEe-h
Confidence 355677776666543 2345544 3332 1 133432 344 544 66899999999999998 665 66654 5
Q ss_pred CcchHHHHHHHHH-hhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEE-EEecCcchhHHHHHHH
Q 007917 98 TVGGLSVLNAIAG-AYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDTA 175 (585)
Q Consensus 98 GpG~~n~~~gl~~-A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~l~~A 175 (585)
.+=+.-++..|.. +...+.||+++...... .+.+..- |+...+..+++.+.-.. ....++.++..+++.|
T Consensus 393 ~~Fl~ra~dQI~~~~a~~~lpv~~v~~~~G~--~g~dG~T------Hq~~~dia~lr~iPnl~V~~Psd~~e~~~~l~~a 464 (641)
T PRK12571 393 STFLQRGYDQLLHDVALQNLPVRFVLDRAGL--VGADGAT------HAGAFDLAFLTNLPNMTVMAPRDEAELRHMLRTA 464 (641)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEEECCCc--CCCCCcc------ccccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHH
Confidence 6655667777744 67889999887622221 1222222 23345578888876543 3456666766666665
Q ss_pred HHHhhhcCCcEEEEecCCC
Q 007917 176 ISTALKESKPVYISISCNL 194 (585)
Q Consensus 176 ~~~a~~~~gPV~i~iP~dv 194 (585)
++. ..+||+|.+|...
T Consensus 465 ~~~---~~~P~~ir~~r~~ 480 (641)
T PRK12571 465 AAH---DDGPIAVRFPRGE 480 (641)
T ss_pred HhC---CCCcEEEEEecCc
Confidence 542 3799999999763
No 264
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=88.26 E-value=2.2 Score=47.14 Aligned_cols=108 Identities=11% Similarity=-0.021 Sum_probs=69.5
Q ss_pred hhhhhhhhcCc-cEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeec--cCCCChHHHHHHhhhc
Q 007917 80 AADGYARSRGV-GACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHT--IGLPDFTQELRCFQAI 155 (585)
Q Consensus 80 ~A~gyar~tg~-~v~~~t~GpG~~n-~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~ 155 (585)
+|.|.+.+.++ .|++ .|=|... .+.-|..|...++|+++|.-.......-+. .|+. .......|...+.+.+
T Consensus 411 aaiGa~lA~~~r~v~i--~GDG~f~m~~~EL~Ta~r~~lpv~~vV~NN~~y~~~~~--~~~~~~~~~~~~~d~~~lA~a~ 486 (535)
T TIGR03394 411 AGIGAQCTSGKRILTL--VGDGAFQMTGWELGNCRRLGIDPIVILFNNASWEMLRV--FQPESAFNDLDDWRFADMAAGM 486 (535)
T ss_pred HHHHHHhCCCCCeEEE--EeChHHHhHHHHHHHHHHcCCCcEEEEEECCccceeeh--hccCCCcccCCCCCHHHHHHHc
Confidence 45665666555 5543 3444443 568899999999999999887654422111 1100 0000113567788888
Q ss_pred eeEEEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCCC
Q 007917 156 TCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (585)
Q Consensus 156 ~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (585)
-.+..++++++++...+++|++ ...+|+.|++..|-
T Consensus 487 G~~~~~v~~~~eL~~al~~a~~---~~~~p~lIev~i~~ 522 (535)
T TIGR03394 487 GGDGVRVRTRAELAAALDKAFA---TRGRFQLIEAMLPR 522 (535)
T ss_pred CCCceEeCCHHHHHHHHHHHHh---cCCCeEEEEEECCc
Confidence 7888999998888888877774 22458899998764
No 265
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=88.25 E-value=13 Score=41.97 Aligned_cols=153 Identities=14% Similarity=0.125 Sum_probs=91.2
Q ss_pred ccHHHHHHHHHHHcCC--CEEEec----CCCChHHHHHhhh-cCCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCc
Q 007917 27 GTLGRHLARRLVEIGA--KDVFSV----PGDFNLTLLDHLI-AEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTV 99 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv--~~vFg~----PG~~~~~l~~al~-~~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~Gp 99 (585)
.+.++++.+.|.+..- +.|+.+ +|+.-. +.+. +.|+=-+=...-|+.++.+|.|.|....+.+|.+ ..+
T Consensus 356 ~~~s~a~~~aL~~~a~~d~~vv~ita~m~g~~gl---~~f~~~fP~R~fdvGIAEq~~vg~AaGLA~~G~kPvv~~-fs~ 431 (677)
T PLN02582 356 QSYTTYFAEALIAEAEVDKDVVAIHAAMGGGTGL---NLFARRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAI-YSS 431 (677)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEEeCCCCCccch---HHHHHHcCccccccCcCHHHHHHHHHHHHHCCCeEEEEe-cHH
Confidence 4677788888777644 345544 444322 2232 2233223367889999999999999543466554 555
Q ss_pred chHHHHHHH-HHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEE-EecCcchhHHHHHHHHH
Q 007917 100 GGLSVLNAI-AGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQA-VVNNLGDAHELIDTAIS 177 (585)
Q Consensus 100 G~~n~~~gl-~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~-~v~~~~~~~~~l~~A~~ 177 (585)
=+.-++.-| .++...+.||+++...... .+.+..-| +......+++.+.-+.. ...+++++..+++.|+.
T Consensus 432 Fl~RA~DQI~~dval~~lpVv~v~~~aG~--vg~dG~TH------~~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~al~ 503 (677)
T PLN02582 432 FLQRGYDQVVHDVDLQKLPVRFAMDRAGL--VGADGPTH------CGAFDVTYMACLPNMVVMAPSDEAELFHMVATAAA 503 (677)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEECCCc--ccCCCCcc------cccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh
Confidence 555566644 4556789999877543222 12211222 23345677877655443 34566666666665553
Q ss_pred HhhhcCCcEEEEecCCC
Q 007917 178 TALKESKPVYISISCNL 194 (585)
Q Consensus 178 ~a~~~~gPV~i~iP~dv 194 (585)
..++||+|..|...
T Consensus 504 ---~~~gPv~IR~pr~~ 517 (677)
T PLN02582 504 ---IDDRPSCFRYPRGN 517 (677)
T ss_pred ---CCCCCEEEEEecCC
Confidence 23699999999764
No 266
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=88.24 E-value=14 Score=41.65 Aligned_cols=152 Identities=12% Similarity=0.152 Sum_probs=90.1
Q ss_pred ccHHHHHHHHHHHcCC--CEEEec----CCC-ChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCC
Q 007917 27 GTLGRHLARRLVEIGA--KDVFSV----PGD-FNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFT 98 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv--~~vFg~----PG~-~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~G 98 (585)
.+..+++.+.|.+..- +.|+.+ +++ ....|.+. .|+=-+-...-|++++.+|.|.|. .|. .+|.+ ..
T Consensus 310 ~~~~~a~~~~L~~~~~~d~~iv~i~ad~~~~~~~~~f~~~---fP~R~~d~GIaEq~~vg~AaGlA~-~G~~Pvv~~-~a 384 (617)
T TIGR00204 310 PSYSKIFSDTLCELAKKDNKIVGITPAMPEGSGLDKFSRK---FPDRYFDVAIAEQHAVTFAAGMAI-EGYKPFVAI-YS 384 (617)
T ss_pred ccHHHHHHHHHHHHHhhCcCEEEEECCccCCcChHHHHHH---CccccccCCccHHHHHHHHHHHHH-CCCEEEEEe-cH
Confidence 4556777777766533 345542 322 22223332 233223367889999999999997 465 66554 55
Q ss_pred cchHHHHHHHH-HhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEE-EEecCcchhHHHHHHHH
Q 007917 99 VGGLSVLNAIA-GAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDTAI 176 (585)
Q Consensus 99 pG~~n~~~gl~-~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~l~~A~ 176 (585)
+=+.-++.-|. ++...+.||+++....... +.+..-|+ ......+++.+.-.. +...++.++..+++.|+
T Consensus 385 ~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~--g~dG~tH~------~~~dia~lr~iPgl~V~~Psd~~e~~~~l~~a~ 456 (617)
T TIGR00204 385 TFLQRAYDQVVHDVCIQKLPVLFAIDRAGIV--GADGETHQ------GAFDISYLRCIPNMVIMAPSDENELRQMLYTGY 456 (617)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEECCCcC--CCCCcccc------cchHHHHHhcCCCcEEEeeCCHHHHHHHHHHHH
Confidence 54545555553 3566789998876543332 22122232 233467888876544 44567777766666665
Q ss_pred HHhhhcCCcEEEEecCCC
Q 007917 177 STALKESKPVYISISCNL 194 (585)
Q Consensus 177 ~~a~~~~gPV~i~iP~dv 194 (585)
+ ..++||+|.+|...
T Consensus 457 ~---~~~~Pv~ir~~r~~ 471 (617)
T TIGR00204 457 H---YDDGPIAVRYPRGN 471 (617)
T ss_pred h---CCCCCEEEEEccCC
Confidence 3 23599999999764
No 267
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=88.17 E-value=3.6 Score=42.31 Aligned_cols=117 Identities=18% Similarity=0.103 Sum_probs=76.3
Q ss_pred EecCchhhHHHhhhhhhhhcC-c-cEEEEeCCcchHH---HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCC-
Q 007917 69 VGCCNELNAGYAADGYARSRG-V-GACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGL- 142 (585)
Q Consensus 69 i~~~~E~~A~~~A~gyar~tg-~-~v~~~t~GpG~~n---~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~- 142 (585)
+....=--|+.+|.+. +..+ . .|+++..|=|++| ...++-=|..-+.|+|+++=+...... .. ...+.
T Consensus 137 iVg~Q~~~AaG~A~a~-k~~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiS-vp----~~~q~~ 210 (358)
T COG1071 137 IVGTQIPLAAGAALAL-KYRGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAIS-VP----RSRQTA 210 (358)
T ss_pred eecccccHHHHHHHHH-HHhCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceee-cc----hhhccc
Confidence 3444444455555553 3344 4 5999999999888 677777788889999999876443311 10 01111
Q ss_pred CChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCCcEEEEec
Q 007917 143 PDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISIS 191 (585)
Q Consensus 143 ~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP 191 (585)
.+...+....-.+.-....=.++..+.+...+|.+.|+.+.||+.|+.=
T Consensus 211 ~~~~~~ra~aygipgv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~ 259 (358)
T COG1071 211 AEIIAARAAAYGIPGVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAV 259 (358)
T ss_pred chhHHhhhhccCCCeEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 1122333343345555555567888899999999999999999999964
No 268
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=88.10 E-value=4 Score=45.48 Aligned_cols=149 Identities=17% Similarity=0.166 Sum_probs=87.9
Q ss_pred ccHHHHHHHHHHHcCCC--EEEec----CCCChHHHHHhhh-cCCCCeEE-ecCchhhHHHhhhhhhhhcCc-cEEEEeC
Q 007917 27 GTLGRHLARRLVEIGAK--DVFSV----PGDFNLTLLDHLI-AEPELNLV-GCCNELNAGYAADGYARSRGV-GACVVTF 97 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~--~vFg~----PG~~~~~l~~al~-~~~~i~~i-~~~~E~~A~~~A~gyar~tg~-~v~~~t~ 97 (585)
++..+++.+.|.+..-+ .++.+ +|... + +.+. +.|+ |++ ...-|++++.+|.|.|. .|. .+| .+.
T Consensus 278 ~~~~~~~~~~l~~~~~~d~~i~~i~~~~~~~~~--~-~~f~~~fP~-R~id~GIaEq~~v~~AaGlA~-~G~~Pvv-~~f 351 (581)
T PRK12315 278 ESYSSVTLDYLLKKIKEGKPVVAINAAIPGVFG--L-KEFRKKYPD-QYVDVGIAEQESVAFASGIAA-NGARPVI-FVN 351 (581)
T ss_pred cCHHHHHHHHHHHHhccCCCEEEEeCccccccC--c-HHHHHhccc-cccCCCchHHHHHHHHHHHHH-CcCeEEE-Eee
Confidence 45667776766665433 34443 33322 2 3332 2233 544 66789999999999998 555 776 444
Q ss_pred CcchHHHHHHHH-HhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEE-EecCcchhHHHHHHH
Q 007917 98 TVGGLSVLNAIA-GAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQA-VVNNLGDAHELIDTA 175 (585)
Q Consensus 98 GpG~~n~~~gl~-~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~-~v~~~~~~~~~l~~A 175 (585)
.+=+.-++.=|. ++...+.||+++....... + +..-| +...+..+++.+..... ...++.++..+++.|
T Consensus 352 s~Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~--~-dG~TH------~~~~Dia~lr~iPnl~V~~P~d~~e~~~~l~~a 422 (581)
T PRK12315 352 STFLQRAYDQLSHDLAINNNPAVMIVFGGSIS--G-NDVTH------LGIFDIPMISNIPNLVYLAPTTKEELIAMLEWA 422 (581)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEECCccc--C-CCccc------cccHHHHHHhcCCCCEEEecCCHHHHHHHHHHH
Confidence 443334444333 2456789998887533222 1 21222 33445788888876554 445666665555555
Q ss_pred HHHhhhc-CCcEEEEecCCC
Q 007917 176 ISTALKE-SKPVYISISCNL 194 (585)
Q Consensus 176 ~~~a~~~-~gPV~i~iP~dv 194 (585)
+ .. .|||+|.+|...
T Consensus 423 ~----~~~~gP~~ir~~r~~ 438 (581)
T PRK12315 423 L----TQHEHPVAIRVPEHG 438 (581)
T ss_pred H----hCCCCcEEEEEcCCc
Confidence 4 43 699999999765
No 269
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=88.09 E-value=6.4 Score=39.83 Aligned_cols=159 Identities=14% Similarity=0.015 Sum_probs=85.3
Q ss_pred cHHHHHHHHHHHcCC--CEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcch--HH
Q 007917 28 TLGRHLARRLVEIGA--KDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGG--LS 103 (585)
Q Consensus 28 ~~a~~i~~~L~~~Gv--~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~--~n 103 (585)
.+-..+.+.|.+.|+ +.+.-+.|.......-...+ ...+.+.| .-+.-+|.|.+.+...--|++.+|=|. .-
T Consensus 28 ~i~~~i~~al~~l~l~p~d~vivsdiG~s~~~~~yl~---~~~~~g~m-G~alpaAiGaklA~pd~~VV~i~GDG~~~~m 103 (301)
T PRK05778 28 GILNAIIQALAELGLDPDKVVVVSGIGCSSKIPGYFL---SHGLHTLH-GRAIAFATGAKLANPDLEVIVVGGDGDLASI 103 (301)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCcHhhhhhhhcc---cCccchhh-ccHHHHHHHHHHHCCCCcEEEEeCccHHHhc
Confidence 345678888988877 34444444443332111111 22233344 335667788777765422233345553 24
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCccCCCccc---e---ee----ccCCC-ChHHHHHHhhhce-eEE--EEecCcchhH
Q 007917 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRI---L---HH----TIGLP-DFTQELRCFQAIT-CSQ--AVVNNLGDAH 169 (585)
Q Consensus 104 ~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~---~---~~----~~~~~-~~~d~~~~~~~~~-k~~--~~v~~~~~~~ 169 (585)
.++-+..|...++|+++|.-+......-+++. . .. ..+.. ...|...+.+.+- .+. ..+.+++++.
T Consensus 104 g~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL~ 183 (301)
T PRK05778 104 GGGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQLV 183 (301)
T ss_pred cHHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHHH
Confidence 46778899999999999987754432211100 0 00 00100 1124455555542 222 2577777766
Q ss_pred HHHHHHHHHhhhcCCcEEEEecCCC
Q 007917 170 ELIDTAISTALKESKPVYISISCNL 194 (585)
Q Consensus 170 ~~l~~A~~~a~~~~gPV~i~iP~dv 194 (585)
+.|++|+ ..+||++|++...-
T Consensus 184 ~ai~~A~----~~~GpalIeV~~~C 204 (301)
T PRK05778 184 ELIKKAI----SHKGFAFIDVLSPC 204 (301)
T ss_pred HHHHHHH----hCCCCEEEEEcCCC
Confidence 6666665 45899999987554
No 270
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=88.08 E-value=14 Score=36.85 Aligned_cols=156 Identities=11% Similarity=-0.019 Sum_probs=84.2
Q ss_pred HHHHHHHHHHcCC---CEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcchHHH--
Q 007917 30 GRHLARRLVEIGA---KDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSV-- 104 (585)
Q Consensus 30 a~~i~~~L~~~Gv---~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~n~-- 104 (585)
-..+++.|.+.++ +.|+....+. ...+-... ....+.+.| ..|.-+|.|.+.+....-+++.+|=|..-+
T Consensus 28 ~~~v~~al~e~~~~~~d~ivvsdiGc-~~~~~~~~---~~~~~~~~~-G~alPaAiGaklA~Pdr~VV~i~GDG~f~~~g 102 (277)
T PRK09628 28 LKSIIRAIDKLGWNMDDVCVVSGIGC-SGRFSSYV---NCNTVHTTH-GRAVAYATGIKLANPDKHVIVVSGDGDGLAIG 102 (277)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCcCH-HHHhhccC---CCCceeecc-ccHHHHHHHHHHHCCCCeEEEEECchHHHHhh
Confidence 3567788888863 3454443333 32222222 233444455 467778889887765322233345554322
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCccCCCccc--------eee--ccCCC-ChHHHHHHhhhce-eE--EEEecCcchhHH
Q 007917 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRI--------LHH--TIGLP-DFTQELRCFQAIT-CS--QAVVNNLGDAHE 170 (585)
Q Consensus 105 ~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~--------~~~--~~~~~-~~~d~~~~~~~~~-k~--~~~v~~~~~~~~ 170 (585)
..-+..|...++|+++|.-+......-+++. ... ..+.. ...|...+.+.+- ++ ..++.+++++..
T Consensus 103 ~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~~~v~~~~el~~ 182 (277)
T PRK09628 103 GNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVARESVIDPQKLEK 182 (277)
T ss_pred HHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEEEccCCHHHHHH
Confidence 3455558899999999987654432211000 000 01100 0124455555542 33 257788877766
Q ss_pred HHHHHHHHhhhcCCcEEEEecCCC
Q 007917 171 LIDTAISTALKESKPVYISISCNL 194 (585)
Q Consensus 171 ~l~~A~~~a~~~~gPV~i~iP~dv 194 (585)
.|++|+ ..+||+.|++..+-
T Consensus 183 al~~Al----~~~Gp~lIeV~~~c 202 (277)
T PRK09628 183 LLVKGF----SHKGFSFFDVFSNC 202 (277)
T ss_pred HHHHHH----hCCCCEEEEEcCCC
Confidence 666665 45899999987554
No 271
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=87.92 E-value=2.2 Score=46.87 Aligned_cols=84 Identities=25% Similarity=0.281 Sum_probs=58.3
Q ss_pred CcccccchHHHHHHHhhh-----------cCCCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeeec
Q 007917 437 QYGSIGWSVGATLGYAQA-----------AKDKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEIH 499 (585)
Q Consensus 437 ~~g~mG~~lpaAiGaalA-----------~p~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~~ 499 (585)
...+||-|.-.||=.+.- .++++|+|+.|||-.- .|.-|.+++|.-+|+|+|=+--..
T Consensus 190 pTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrL----- 264 (887)
T COG2609 190 PTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRL----- 264 (887)
T ss_pred CcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchhhc-----
Confidence 346788888778766542 3578999999999887 667788999998999988653222
Q ss_pred CCCCCCC--CCCCHHHHHHHhcCCCCCccEEEe
Q 007917 500 DGPYNVI--KNWDYTGLVNAIHNGEGKCWTAKV 530 (585)
Q Consensus 500 ~~~~~~~--~~~d~~~la~a~G~~~~~~~~~~v 530 (585)
+++-..- ---.|+.+.++.|+ ..++|
T Consensus 265 DgpVrgngkiiqelE~~FrgAGW-----~Vikv 292 (887)
T COG2609 265 DGPVRGNGKIIQELEGIFRGAGW-----NVIKV 292 (887)
T ss_pred CCcccCCchhHHHHHHHhccCCc-----eEEEE
Confidence 3321110 01257888889998 66666
No 272
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=87.58 E-value=0.52 Score=49.41 Aligned_cols=39 Identities=23% Similarity=0.347 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhC
Q 007917 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (585)
Q Consensus 225 ~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~ 263 (585)
.++++++|..|+|.+|+-|+|..-+++...+++|++.|.
T Consensus 296 ~~d~a~~l~~A~~ViIVPGYGmAVAqAQh~v~el~~~L~ 334 (462)
T PRK09444 296 AEEVAEMLKNSHSVIITPGYGMAVAQAQYPVAEITEKLR 334 (462)
T ss_pred HHHHHHHHHhCCcEEEECChHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999998889888888888765
No 273
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=87.25 E-value=3.9 Score=42.26 Aligned_cols=97 Identities=16% Similarity=0.195 Sum_probs=63.4
Q ss_pred cEEEEeCCcchHH---HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcc-
Q 007917 91 GACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLG- 166 (585)
Q Consensus 91 ~v~~~t~GpG~~n---~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~- 166 (585)
.++++..|=|+++ ..-++..|..-++|+|+|.-+.... .+.. .+.... ..|.....+.+--...+|...+
T Consensus 158 ~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~-i~~~--~~~~~~---~~d~a~~a~a~G~~~~~Vdg~d~ 231 (341)
T CHL00149 158 RVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWA-IGMA--HHRSTS---IPEIHKKAEAFGLPGIEVDGMDV 231 (341)
T ss_pred CEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCee-eecc--hhheeC---CccHHHHHHhCCCCEEEEeCCCH
Confidence 5777778888887 2335677888899999999875522 1110 000111 1244566666655556666544
Q ss_pred -hhHHHHHHHHHHhhhcCCcEEEEecCC
Q 007917 167 -DAHELIDTAISTALKESKPVYISISCN 193 (585)
Q Consensus 167 -~~~~~l~~A~~~a~~~~gPV~i~iP~d 193 (585)
.+.+.+.+|++.|....||+.|++-..
T Consensus 232 ~av~~a~~~A~~~ar~~~gP~lIev~ty 259 (341)
T CHL00149 232 LAVREVAKEAVERARQGDGPTLIEALTY 259 (341)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEEEe
Confidence 456788999999988889999998753
No 274
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=87.21 E-value=18 Score=33.47 Aligned_cols=105 Identities=17% Similarity=0.099 Sum_probs=59.2
Q ss_pred HhhhhhhhhcCccEEEEeCCcchHH-HHHHHHHhhhcCC-cEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhce
Q 007917 79 YAADGYARSRGVGACVVTFTVGGLS-VLNAIAGAYSENL-PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAIT 156 (585)
Q Consensus 79 ~~A~gyar~tg~~v~~~t~GpG~~n-~~~gl~~A~~~~~-Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 156 (585)
-+|.|.+.+..+ -+++..|=|... .+..+.++...+. |+++|.-+.......... +.. .....|..++.+.+-
T Consensus 49 p~AiGaala~~~-~vv~i~GDG~f~m~~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~---~~~-~~~~~d~~~lA~a~G 123 (179)
T cd03372 49 SIGLGLALAQPR-KVIVIDGDGSLLMNLGALATIAAEKPKNLIIVVLDNGAYGSTGNQ---PTH-AGKKTDLEAVAKACG 123 (179)
T ss_pred HHHHHHHhcCCC-cEEEEECCcHHHhCHHHHHHHHHcCCCCEEEEEEcCccccccCCC---CCC-CCCCCCHHHHHHHcC
Confidence 356666655434 223334555554 3678888888875 688887654433221110 011 011134566777764
Q ss_pred eEEEEec-CcchhHHHHHHHHHHhhhcCCcEEEEecCCC
Q 007917 157 CSQAVVN-NLGDAHELIDTAISTALKESKPVYISISCNL 194 (585)
Q Consensus 157 k~~~~v~-~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (585)
-...++. +++++.+.+++|+ +||..|++..|-
T Consensus 124 ~~~~~v~~~~~el~~al~~a~------~gp~lIev~~~~ 156 (179)
T cd03372 124 LDNVATVASEEAFEKAVEQAL------DGPSFIHVKIKP 156 (179)
T ss_pred CCeEEecCCHHHHHHHHHHhc------CCCEEEEEEEcC
Confidence 4455666 6666655555554 699999999864
No 275
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=86.93 E-value=1.9 Score=43.71 Aligned_cols=111 Identities=18% Similarity=0.187 Sum_probs=70.3
Q ss_pred CEEEeCcccchhchHHHHHHHHHHhCCCeEEccC---CccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccC
Q 007917 238 PVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS---GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFN 314 (585)
Q Consensus 238 pvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~---gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~ 314 (585)
-++-.|.|....+..+.+++||+.||.-|-+|-. ..|.+|.+ ..+|.. | . .=.+|+.|.+|-+=.
T Consensus 196 vVV~~GrG~~~~e~~~~~~~LA~~LGaavG~SRp~vd~~gW~p~~--~QIGqT-G---k------~V~P~lYiA~GISGA 263 (312)
T PRK11916 196 RVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERE--RYIGVS-G---V------LLKSDLYLTLGISGQ 263 (312)
T ss_pred EEEECCCCCCChHHHHHHHHHHHHhCCEEEecHHHHccCCCCChh--cEECCC-C---C------CcCccEEEEeccccH
Confidence 3555667776666789999999999999998753 23566654 345552 2 1 126799999996532
Q ss_pred CcccccccccCCCcceEEEcCCceee-cCCCcccc-ccHHHHHHHHHHHhc
Q 007917 315 DYSSVGYSLLIKKEKAIIVQPHRVTV-GNGPSLGW-VFMADFLSALAKKLR 363 (585)
Q Consensus 315 ~~~~~~~~~~~~~~~~i~id~~~~~~-~~~~~~~~-~~~~~~l~~L~~~l~ 363 (585)
-....+.. ....+|-||.|+... -....|+. .|+.+++.+|++.++
T Consensus 264 iQH~aGm~---~s~~IVAIN~Dp~APIF~~ADygiVgD~~~vlP~L~e~l~ 311 (312)
T PRK11916 264 IQHMVGGN---GAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQLS 311 (312)
T ss_pred HHHHhhcc---cCCEEEEECCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence 22222221 233588899888631 01223333 389999999998764
No 276
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=86.41 E-value=5.1 Score=37.30 Aligned_cols=106 Identities=15% Similarity=0.098 Sum_probs=60.7
Q ss_pred HHhhhhhhhhcCc-cEEEEeCCcchHH-HHHHHHHhhhcC-CcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhh
Q 007917 78 GYAADGYARSRGV-GACVVTFTVGGLS-VLNAIAGAYSEN-LPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQA 154 (585)
Q Consensus 78 ~~~A~gyar~tg~-~v~~~t~GpG~~n-~~~gl~~A~~~~-~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 154 (585)
.-+|.|.+.+..+ .+|++ |=|... .+..+..|...+ .|+++|.-+......-+.+ .... ....|..++.+.
T Consensus 48 lpaAiGa~la~~~~Vv~i~--GDG~f~m~~~el~ta~~~~~~pv~~vV~NN~~yg~~~~q---~~~~-~~~~d~~~lA~a 121 (181)
T TIGR03846 48 SSIGLGLALATDRTVIVID--GDGSLLMNLGVLPTIAAESPKNLILVILDNGAYGSTGNQ---PTPA-SRRTDLELVAKA 121 (181)
T ss_pred HHHHHHHHHcCCCcEEEEE--cchHHHhhhhHHHHHHHhCCCCeEEEEEeCCccccccCc---CCCC-CCCCCHHHHHHH
Confidence 3466776666544 44444 433333 456777877777 5999998765433211110 0110 012355677777
Q ss_pred ceeEEEE-ecCcchhHHHHHHHHHHhhhcCCcEEEEecCCC
Q 007917 155 ITCSQAV-VNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (585)
Q Consensus 155 ~~k~~~~-v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (585)
+--...+ +.+++++...++ +...+||..|++..|-
T Consensus 122 ~G~~~~~~v~~~~~l~~al~-----a~~~~~p~li~v~~~~ 157 (181)
T TIGR03846 122 AGIRNVEKVADEEELRDALK-----ALAMKGPTFIHVKVKP 157 (181)
T ss_pred CCCCeEEEeCCHHHHHHHHH-----HHcCCCCEEEEEEeCC
Confidence 6444455 788766655553 3345799999999773
No 277
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=86.14 E-value=4.2 Score=43.31 Aligned_cols=96 Identities=15% Similarity=0.136 Sum_probs=61.4
Q ss_pred cEEEEeCCcchHH---HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEec--Cc
Q 007917 91 GACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN--NL 165 (585)
Q Consensus 91 ~v~~~t~GpG~~n---~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~--~~ 165 (585)
.++++..|=|.+| ..-++.-|..-++|+|++.-+.... .+.-. ..+.. ..+.....+.+--...+|. ++
T Consensus 224 ~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~ya-ig~~~----~~~t~-~~dia~~A~a~G~~~~~VDG~D~ 297 (433)
T PLN02374 224 DVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSH----LRATS-DPEIWKKGPAFGMPGVHVDGMDV 297 (433)
T ss_pred CEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCEe-eccee----eeccC-CCCHHHHHHhcCCcEEEECCCCH
Confidence 6777888888776 3446777888999999999764321 11100 00101 1133445555544445554 44
Q ss_pred chhHHHHHHHHHHhhhcCCcEEEEecC
Q 007917 166 GDAHELIDTAISTALKESKPVYISISC 192 (585)
Q Consensus 166 ~~~~~~l~~A~~~a~~~~gPV~i~iP~ 192 (585)
..+.+.+.+|++.|....||+.|++-.
T Consensus 298 ~av~~a~~~A~~~Ar~g~gP~LIe~~t 324 (433)
T PLN02374 298 LKVREVAKEAIERARRGEGPTLVECET 324 (433)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEE
Confidence 566788899999999889999999764
No 278
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=86.07 E-value=6.2 Score=36.96 Aligned_cols=108 Identities=17% Similarity=0.084 Sum_probs=60.5
Q ss_pred HHHhhhhhhhhcC-ccEEEEeCCcchH-HHHHHHHHhhhcCC-cEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhh
Q 007917 77 AGYAADGYARSRG-VGACVVTFTVGGL-SVLNAIAGAYSENL-PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQ 153 (585)
Q Consensus 77 A~~~A~gyar~tg-~~v~~~t~GpG~~-n~~~gl~~A~~~~~-Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 153 (585)
+.-+|.|.+.+.. +-|+.++ |=|.. -.+..|..+...+. |+++|.-+......-.+. .... ...|..++.+
T Consensus 53 ~lpaAiGaala~p~~~Vv~i~-GDG~f~m~~~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~---~~~~--~~~d~~~~A~ 126 (188)
T cd03371 53 ASQIALGIALARPDRKVVCID-GDGAALMHMGGLATIGGLAPANLIHIVLNNGAHDSVGGQ---PTVS--FDVSLPAIAK 126 (188)
T ss_pred HHHHHHHHHHhCCCCcEEEEe-CCcHHHhhccHHHHHHHcCCCCcEEEEEeCchhhccCCc---CCCC--CCCCHHHHHH
Confidence 3446677665553 4333333 43333 34577888777776 677777665433211110 0111 1134556666
Q ss_pred hce-eEEEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCCC
Q 007917 154 AIT-CSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (585)
Q Consensus 154 ~~~-k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (585)
.+- ++..++.+++++.+.+++|+ ..++|+.|++..+-
T Consensus 127 a~G~~~~~~v~~~~el~~al~~a~----~~~~p~lIev~~~~ 164 (188)
T cd03371 127 ACGYRAVYEVPSLEELVAALAKAL----AADGPAFIEVKVRP 164 (188)
T ss_pred HcCCceEEecCCHHHHHHHHHHHH----hCCCCEEEEEEecC
Confidence 663 44456777776666666554 45799999998765
No 279
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=85.83 E-value=13 Score=41.36 Aligned_cols=158 Identities=16% Similarity=0.093 Sum_probs=88.3
Q ss_pred HHHHHHHc-CCCEEEecC-CCChHHHHHhhhcCCCCeEEecCchh---hHHHhhhhhhhhcC-ccEEEEeCCcchHHHHH
Q 007917 33 LARRLVEI-GAKDVFSVP-GDFNLTLLDHLIAEPELNLVGCCNEL---NAGYAADGYARSRG-VGACVVTFTVGGLSVLN 106 (585)
Q Consensus 33 i~~~L~~~-Gv~~vFg~P-G~~~~~l~~al~~~~~i~~i~~~~E~---~A~~~A~gyar~tg-~~v~~~t~GpG~~n~~~ 106 (585)
+.+.|.+. .=+.++..- |.+.......+.....-+++....=. .+.-+|.|.+.+.. +-|+.++..-++.-.+.
T Consensus 364 ~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~~G~mG~~lpaAiGa~la~p~r~vv~i~GDGsf~m~~~ 443 (574)
T PRK09124 364 LARQISEFAADDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQAAHPGRQVVALSGDGGFSMLMG 443 (574)
T ss_pred HHHHHHhhcCCCcEEEEcCCHHHHHHHHhcccCCCCeEEecCCcccccchHHHHHHHHHhCCCCeEEEEecCcHHhccHH
Confidence 44444443 234555444 33322222223222234565443322 24557788776653 43443333334544678
Q ss_pred HHHHhhhcCCcEEEEeCCCCCccCCCc-cceee--ccCC-CChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc
Q 007917 107 AIAGAYSENLPVICIVGGPNSNDYGTN-RILHH--TIGL-PDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (585)
Q Consensus 107 gl~~A~~~~~Pll~I~g~~~~~~~~~~-~~~~~--~~~~-~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~ 182 (585)
.|..|...++|+++|.-+......-+. ...+. ..+. ....|..++.+.+-....++.+++++...+++|+ ..
T Consensus 444 eL~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~----~~ 519 (574)
T PRK09124 444 DFLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYLTDGTDLHNPDFAAIAEACGITGIRVEKASELDGALQRAF----AH 519 (574)
T ss_pred HHHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHH----hC
Confidence 899999999999999887653321100 00000 0110 0113567888888778889999888777777765 34
Q ss_pred CCcEEEEecCCC
Q 007917 183 SKPVYISISCNL 194 (585)
Q Consensus 183 ~gPV~i~iP~dv 194 (585)
.||+.|++..|-
T Consensus 520 ~~p~lIev~i~~ 531 (574)
T PRK09124 520 DGPALVDVVTAK 531 (574)
T ss_pred CCCEEEEEEecC
Confidence 799999999874
No 280
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=85.82 E-value=30 Score=36.09 Aligned_cols=158 Identities=15% Similarity=0.084 Sum_probs=87.4
Q ss_pred ccHHHHHHHHHHHcCCC-EEEecCCCChHHHHHhhhcC---CCCeEEecCchhhHHHhhhhhhhhcC-c-cEEEEeCCcc
Q 007917 27 GTLGRHLARRLVEIGAK-DVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRG-V-GACVVTFTVG 100 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~-~vFg~PG~~~~~l~~al~~~---~~i~~i~~~~E~~A~~~A~gyar~tg-~-~v~~~t~GpG 100 (585)
++-.++|-..+....=+ .|..-.|.....++..-.+. ..-+++..-.=..+.-+|.|.+.+.. + .+|+. |=|
T Consensus 172 ~~r~~ai~~i~~~l~~~~iVV~~~G~~s~el~~~~~~~~~~~~~~f~~~GsMG~a~p~AlG~ala~p~r~Vv~i~--GDG 249 (361)
T TIGR03297 172 MTREEAIAAILDHLPDNTVIVSTTGKTSRELYELRDRIGQGHARDFLTVGSMGHASQIALGLALARPDQRVVCLD--GDG 249 (361)
T ss_pred CCHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHhhcccccCCCCceEeechhhhHHHHHHHHHHHCCCCCEEEEE--ChH
Confidence 66667777777777654 44444555444444332110 01334433222224457778776653 4 44443 444
Q ss_pred hH-HHHHHHHHhhhcCC-cEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhce-eEEEEecCcchhHHHHHHHHH
Q 007917 101 GL-SVLNAIAGAYSENL-PVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAIT-CSQAVVNNLGDAHELIDTAIS 177 (585)
Q Consensus 101 ~~-n~~~gl~~A~~~~~-Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-k~~~~v~~~~~~~~~l~~A~~ 177 (585)
.. -.+..+..+...+. |+++|.-+......-.+. .... ...|...+.+.+- .+..++.+++++.+.+++|
T Consensus 250 sflm~~~eL~t~~~~~~~nli~VVlNNg~~~~~g~q---~~~~--~~~d~~~iA~a~G~~~~~~v~~~~eL~~al~~a-- 322 (361)
T TIGR03297 250 AALMHMGGLATIGTQGPANLIHVLFNNGAHDSVGGQ---PTVS--QHLDFAQIAKACGYAKVYEVSTLEELETALTAA-- 322 (361)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEcCccccccCCc---CCCC--CCCCHHHHHHHCCCceEEEeCCHHHHHHHHHHH--
Confidence 33 24567777766664 788888776553221111 1111 1235566666654 3567888876666655555
Q ss_pred HhhhcCCcEEEEecCCCC
Q 007917 178 TALKESKPVYISISCNLP 195 (585)
Q Consensus 178 ~a~~~~gPV~i~iP~dv~ 195 (585)
...+||++|++..+-.
T Consensus 323 --~~~~gp~lIeV~v~~g 338 (361)
T TIGR03297 323 --SSANGPRLIEVKVRPG 338 (361)
T ss_pred --HhCCCcEEEEEEecCC
Confidence 4457999999997763
No 281
>TIGR00300 conserved hypothetical protein TIGR00300. All members of the family come from genome projects. A partial length search brings in two plant lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzymes hitting the N-terminal region of the family.
Probab=85.67 E-value=1.4 Score=45.18 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=45.8
Q ss_pred HHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecC---C-Cc--ccc-ccHHHHHHHHHHHhc
Q 007917 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN---G-PS--LGW-VFMADFLSALAKKLR 363 (585)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~---~-~~--~~~-~~~~~~l~~L~~~l~ 363 (585)
+.++.++++|.||.+.+.+-+..+++.. +...+++.||+++..... + .. .+- .|+.+|+..|.+.|.
T Consensus 332 amR~~~~~a~~vimlaTmLHSIAtGNm~--Ps~v~~~cVDInp~~VtKL~DRGs~qa~giVTdvg~Fl~~L~~~l~ 405 (407)
T TIGR00300 332 KMRELLQGADMVLMLSTMLHSIAVGNLL--PSGVKTICVDINPAVVTKLSDRGSSQAVGVVTDVGLFLPLLVRQIK 405 (407)
T ss_pred HHHHHhccCCeehhHHHHHHHHhhcccc--cccceEEEEECCHHHhhhhhccCceeEEEEEecHHHHHHHHHHHHh
Confidence 3445678999999999988777665543 233589999999875531 1 11 111 279999999988764
No 282
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=85.66 E-value=35 Score=39.85 Aligned_cols=178 Identities=13% Similarity=0.004 Sum_probs=92.5
Q ss_pred CCCeEEecCchhhHHH--hhhhhhhh--cC-ccEEEEeCCcc-hHHHHHHHHHhhhcCCc-EEEEeCCCCCccCCCccce
Q 007917 64 PELNLVGCCNELNAGY--AADGYARS--RG-VGACVVTFTVG-GLSVLNAIAGAYSENLP-VICIVGGPNSNDYGTNRIL 136 (585)
Q Consensus 64 ~~i~~i~~~~E~~A~~--~A~gyar~--tg-~~v~~~t~GpG-~~n~~~gl~~A~~~~~P-ll~I~g~~~~~~~~~~~~~ 136 (585)
++=-+-....|+++.. +|.|-+.+ .+ .-.+.+|..+= +.=+..-+-.+-..+.. +++++...... .+....
T Consensus 572 pgR~ie~GIaEqnm~~~~~AAG~a~a~~G~g~iPf~~tfs~F~~~R~~Dqir~a~~~~~~~vlig~T~gg~t-lg~dG~- 649 (896)
T PRK13012 572 DGQILEEGITEAGAISSWIAAATSYSVHGLPMLPFYIYYSMFGFQRVGDLIWAAADQRARGFLLGATAGRTT-LGGEGL- 649 (896)
T ss_pred CCcEEecchhhhhhhHHHHHHHhhHHhcCCCcEEEEEehHHHHHHHHHHHHHHHHhcccCCeEEEEeCcccc-cCCCCC-
Confidence 3445557789999944 55544444 33 33333444432 11122222222222333 44444332222 222211
Q ss_pred eeccCCCChHHHHHHhhhcee-EEEEecCcchhHHHHHHHHHHhhh--cCCcEEEEecCCCCCCCCCCCCCCCCCccCCC
Q 007917 137 HHTIGLPDFTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALK--ESKPVYISISCNLPGIPHPTFARDPVPFFLAP 213 (585)
Q Consensus 137 ~~~~~~~~~~d~~~~~~~~~k-~~~~v~~~~~~~~~l~~A~~~a~~--~~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~ 213 (585)
+||...+..+++.+.. -.++..++.++...++.+++.+.. ..+|+||.+...-.. .|.. +....
T Consensus 650 -----THQ~~eslal~RaIPN~~V~~PADa~E~a~iv~~al~~m~~~~~~~p~YIrL~r~~~~--~p~~-~~~~~----- 716 (896)
T PRK13012 650 -----QHQDGHSHLLASTIPNCRAYDPAFAYELAVIVDDGMRRMLEEQEDVFYYLTVMNENYA--QPAL-PEGAE----- 716 (896)
T ss_pred -----CCcchHhHHHHHhCCCCEEEeCCCHHHHHHHHHHHHHHHHhccCCCeEEEEecCCCCC--CCCC-Cccch-----
Confidence 1344556778887643 456677888888999999976543 368999999754321 1110 00000
Q ss_pred CCCChhhHHHHHHHHHHHHHhcC--CCEEEeCcccchhchHHHHHHHHHHhCCC
Q 007917 214 KVSNQLGLEAAVEATADFLNKAV--KPVLVGGPNIRVAKAQKAFIELADATGYP 265 (585)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~a~--rpvIi~G~g~~~~~a~~~l~~lae~l~~P 265 (585)
..+.+-.-.|.+.+ .-+.|+|.|.--..+.++...|++.+|+.
T Consensus 717 ---------~~i~kG~y~l~~~~~g~dv~LiasGs~v~eAl~AAe~L~~e~GI~ 761 (896)
T PRK13012 717 ---------EGILKGMYRLAAAAEAPRVQLLGSGAILREVLAAARLLADDWGVD 761 (896)
T ss_pred ---------hccccCcEEEeccCCCCCEEEEEecHHHHHHHHHHHHHHhhhCCC
Confidence 00111111121212 25888888887777888888888887764
No 283
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=85.53 E-value=10 Score=36.93 Aligned_cols=88 Identities=11% Similarity=0.048 Sum_probs=51.0
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCccCCCccc-----eee-----ccC-CCChHHHHHHhhhceeEEE---EecCcchhH
Q 007917 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRI-----LHH-----TIG-LPDFTQELRCFQAITCSQA---VVNNLGDAH 169 (585)
Q Consensus 104 ~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~-----~~~-----~~~-~~~~~d~~~~~~~~~k~~~---~v~~~~~~~ 169 (585)
.+..+.++...++|+++|.-+......-.++. ..+ ..+ .....|..++.+.+-.... ++.+++++.
T Consensus 103 g~~~l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a~G~~~~~~~~v~~~~~l~ 182 (237)
T cd02018 103 GFGALSHSLFRGEDITVIVLDNEVYSNTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAATHGCVYVARLSPALKKHFL 182 (237)
T ss_pred cHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHHCCCCEEEEEccCCHHHHH
Confidence 46777778889999999998766432211110 000 000 0011355677777644343 366665555
Q ss_pred HHHHHHHHHhhh-cCCcEEEEecCCCC
Q 007917 170 ELIDTAISTALK-ESKPVYISISCNLP 195 (585)
Q Consensus 170 ~~l~~A~~~a~~-~~gPV~i~iP~dv~ 195 (585)
..| +.|.. .+||+.|++..+..
T Consensus 183 ~al----~~al~~~~GP~lI~v~i~c~ 205 (237)
T cd02018 183 KVV----KEAISRTDGPTFIHAYTPCI 205 (237)
T ss_pred HHH----HHHHhcCCCCEEEEEeCCCC
Confidence 544 44544 58999999998763
No 284
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=85.14 E-value=5.8 Score=44.43 Aligned_cols=117 Identities=9% Similarity=-0.072 Sum_probs=68.6
Q ss_pred HHhhhhhhhhcC-ccEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceee----ccC-CCChHHHHH
Q 007917 78 GYAADGYARSRG-VGACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHH----TIG-LPDFTQELR 150 (585)
Q Consensus 78 ~~~A~gyar~tg-~~v~~~t~GpG~~n-~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~----~~~-~~~~~d~~~ 150 (585)
.-+|.|.+.+.. +-|+..+..-++.. .+..|.+|...++|+++|.-+......-+++..+. ..+ .....|..+
T Consensus 409 ~~~AiGa~~a~p~~~Vv~i~GDG~f~~~g~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~~~~~~~~~~d~~~ 488 (595)
T TIGR03336 409 IGVASGLSKAGEKQRIVAFIGDSTFFHTGIPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISIEE 488 (595)
T ss_pred HHHHhhhhhcCCCCCEEEEeccchhhhcCHHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCCCCCCcCCCcCHHH
Confidence 335666665543 33333333333443 48999999999999999988765432211100000 000 001135677
Q ss_pred HhhhceeEEEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCCCC
Q 007917 151 CFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLP 195 (585)
Q Consensus 151 ~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~ 195 (585)
+.+.+-....++.+++++.+ +..|++.+...+||..|.+..+-.
T Consensus 489 ia~a~G~~~~~v~~~~~l~~-l~~al~~a~~~~gp~li~v~~~C~ 532 (595)
T TIGR03336 489 LCRASGVEFVEVVDPLNVKE-TIEVFKAALAAEGVSVIIAKQPCV 532 (595)
T ss_pred HHHHcCCCEEEEeCcCCHHH-HHHHHHHHHhcCCCEEEEEcccCc
Confidence 77887667777888766542 455556665568999999987653
No 285
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=84.72 E-value=14 Score=36.98 Aligned_cols=155 Identities=17% Similarity=0.119 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHcCCC--EEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcC-ccEEEEeCCcchHH--
Q 007917 29 LGRHLARRLVEIGAK--DVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLS-- 103 (585)
Q Consensus 29 ~a~~i~~~L~~~Gv~--~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg-~~v~~~t~GpG~~n-- 103 (585)
+-.+|.++|.+.|+. .++-+-|......+....+ .....+.|.. +.-+|.|...+.. +-| ++..|=|..-
T Consensus 19 i~~~~~~a~~~l~~~p~d~ivvsdiG~~~~~~~~~~---~~~~~~~mG~-alp~AiGaklA~pd~~V-Vai~GDG~~~~i 93 (280)
T PRK11869 19 IRNALMKALSELNLKPRQVVIVSGIGQAAKMPHYIN---VNGFHTLHGR-AIPAATAVKATNPELTV-IAEGGDGDMYAE 93 (280)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEeCchHhhhHHHHcc---CCCCCccccc-HHHHHHHHHHHCCCCcE-EEEECchHHhhC
Confidence 346677888888765 3333344333333322222 2233334443 3445666555553 333 2333444433
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCccCCCccce------ee----ccCCC-ChHHHHHHhhhce-eEEEE--ecCcchhH
Q 007917 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRIL------HH----TIGLP-DFTQELRCFQAIT-CSQAV--VNNLGDAH 169 (585)
Q Consensus 104 ~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~------~~----~~~~~-~~~d~~~~~~~~~-k~~~~--v~~~~~~~ 169 (585)
.+..+..|...++|+++|.-+......-+++.. +. ..+.. .-.|...+.+.+- ++..+ +.+++++.
T Consensus 94 G~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l~ 173 (280)
T PRK11869 94 GGNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEETK 173 (280)
T ss_pred cHHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHHH
Confidence 389999999999999999876543321110000 00 01111 1125556666552 33332 45665555
Q ss_pred HHHHHHHHHhhhcCCcEEEEecC
Q 007917 170 ELIDTAISTALKESKPVYISISC 192 (585)
Q Consensus 170 ~~l~~A~~~a~~~~gPV~i~iP~ 192 (585)
+.|.+|+ ..+||.+|++-.
T Consensus 174 ~~i~~Al----~~~Gp~lIeV~~ 192 (280)
T PRK11869 174 EILKEAI----KHKGLAIVDIFQ 192 (280)
T ss_pred HHHHHHH----hCCCCEEEEEEC
Confidence 5555544 568999999863
No 286
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=84.66 E-value=1.6 Score=42.77 Aligned_cols=68 Identities=12% Similarity=0.086 Sum_probs=43.9
Q ss_pred HHHHHhhhCCEEEEeCCccCCcccccccc--cCCCcceEEEcCCceeecCC-CccccccHHHHHHHHHHHh
Q 007917 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGNG-PSLGWVFMADFLSALAKKL 362 (585)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~~~~~~~~~-~~~~~~~~~~~l~~L~~~l 362 (585)
.+.+.+.+||++|++|+++.-..-..+.. ...+.++|.|++++..+... ......++..+|..|.+.+
T Consensus 171 ~~~~~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d~~~~~~i~~~~~~~l~~l~~~~ 241 (244)
T PRK14138 171 EAIRLSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGETPLDDIATLKYNMDVVEFANRVMSEG 241 (244)
T ss_pred HHHHHHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCCcceeEEEeCCHHHHHHHHHHHh
Confidence 35567789999999999986444322211 12356788899887655411 1233457888998887644
No 287
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=84.41 E-value=5.2 Score=41.74 Aligned_cols=64 Identities=14% Similarity=0.265 Sum_probs=36.3
Q ss_pred CcEEEEEcCchhH-hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEec-----
Q 007917 458 KRVIACIGDGSFQ-EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR----- 531 (585)
Q Consensus 458 ~~vv~v~GDGsf~-eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~----- 531 (585)
..++.+.|-|++. |-.-..-.+-.=.++|++|+.||- .|.++|+.+|+ +...++
T Consensus 56 ~~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~---------------R~~~ia~~~g~-----~v~~~~~~wg~ 115 (383)
T COG0075 56 GDVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFGE---------------RFAEIAERYGA-----EVVVLEVEWGE 115 (383)
T ss_pred CcEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChHHH---------------HHHHHHHHhCC-----ceEEEeCCCCC
Confidence 3566666666665 322222222223677777887774 57777777776 333332
Q ss_pred --CHHHHHHHHH
Q 007917 532 --SEDELTEAMK 541 (585)
Q Consensus 532 --~~~eL~~al~ 541 (585)
++++++++|+
T Consensus 116 ~v~p~~v~~~L~ 127 (383)
T COG0075 116 AVDPEEVEEALD 127 (383)
T ss_pred CCCHHHHHHHHh
Confidence 5667776666
No 288
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=84.33 E-value=0.94 Score=45.72 Aligned_cols=88 Identities=19% Similarity=0.272 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhC---CCeEEccC-CccCCCCCCCCcee----eecCCCCCHHH
Q 007917 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG---YPIAIMPS-GKGLVPEHHPHFIG----TYWGAVSSSFC 296 (585)
Q Consensus 225 ~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~---~Pv~~t~~-gkg~~~~~hp~~~G----~~~g~~~~~~~ 296 (585)
-++++++|.+++..+|+-|+|..-+++...+++++++|. ++|=--.. -.|..|.+-.-.+- .|+-.+--++.
T Consensus 298 aedaA~~l~nA~sVIIvPGYGmAVAQAQh~v~E~~~~L~~~Gv~VrfaIHPVAGRmPGHMNVLLAEA~VpYd~v~emddI 377 (463)
T COG1282 298 AEDAAELLKNASSVIIVPGYGMAVAQAQHPVAEITEKLRARGVNVRFAIHPVAGRMPGHMNVLLAEAKVPYDIVLEMDEI 377 (463)
T ss_pred HHHHHHHHhCCCeEEEecCchHHHHhhhhHHHHHHHHHHhcCCeeeEeecccccCCCcchhhhhhhccCCHHHHhhHHhh
Confidence 467889999999999999999988777777777777654 44322110 00112211000000 00011111344
Q ss_pred HHHhhhCCEEEEeCCc
Q 007917 297 GEIVESADAYVFVGPI 312 (585)
Q Consensus 297 ~~~l~~aD~vl~lG~~ 312 (585)
|+-+.++|++|++|..
T Consensus 378 N~dF~~tDVvlVIGAN 393 (463)
T COG1282 378 NDDFADTDVVLVIGAN 393 (463)
T ss_pred cchhccccEEEEEccC
Confidence 5566789999999975
No 289
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=83.74 E-value=25 Score=39.73 Aligned_cols=153 Identities=12% Similarity=0.086 Sum_probs=86.9
Q ss_pred ccHHHHHHHHHHHcCC--CEEEec----CCCChHHHHHhhh-cCCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCc
Q 007917 27 GTLGRHLARRLVEIGA--KDVFSV----PGDFNLTLLDHLI-AEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTV 99 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv--~~vFg~----PG~~~~~l~~al~-~~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~Gp 99 (585)
++..+++.+.|.+..- +.|+++ +++. .++.+. +.|+=-+=..--|+.++.+|.|.|....+.+|.+- .+
T Consensus 381 ~s~~~~f~~aL~~la~~D~~Iv~Itadm~~gt---gl~~f~~~fPdRffDvGIAEQhaVt~AAGLA~~G~kPvv~iy-st 456 (701)
T PLN02225 381 RTYSDCFVEALVMEAEKDRDIVVVHAGMEMDA---SLITFQERFPDRFFNVGMAEQHAVTFSAGLSSGGLKPFCIIP-SA 456 (701)
T ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCccCcc---cHHHHHHHccccccccCccHHHHHHHHHHHHHCCCEEEEEee-hh
Confidence 5667777777766533 445554 3322 123332 22432233677899999999999974444666544 34
Q ss_pred chHHHHHHHHH-hhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEE-EecCcchhHHHHHHHHH
Q 007917 100 GGLSVLNAIAG-AYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQA-VVNNLGDAHELIDTAIS 177 (585)
Q Consensus 100 G~~n~~~gl~~-A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~-~v~~~~~~~~~l~~A~~ 177 (585)
=+.-++.-|.. +...+.||.++.- +.. ..+.+..-|| ......+++.+.-... ...+++++..+++.|+.
T Consensus 457 FlqRAyDQI~~Dval~~lpV~~vid-~aG-lvg~DG~TH~------g~~Dia~lr~IPnm~V~aPsD~~El~~mL~~A~~ 528 (701)
T PLN02225 457 FLQRAYDQVVHDVDRQRKAVRFVIT-SAG-LVGSDGPVQC------GAFDIAFMSSLPNMIAMAPADEDELVNMVATAAY 528 (701)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEE-CCc-cCCCCCcccc------ccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHHh
Confidence 33344554443 4566778766643 322 1222222232 2233688888766553 33566666666665542
Q ss_pred HhhhcCCcEEEEecCCC
Q 007917 178 TALKESKPVYISISCNL 194 (585)
Q Consensus 178 ~a~~~~gPV~i~iP~dv 194 (585)
..++||+|..|...
T Consensus 529 ---~~~gPv~IR~pRg~ 542 (701)
T PLN02225 529 ---VTDRPVCFRFPRGS 542 (701)
T ss_pred ---cCCCCEEEEecccc
Confidence 33699999999874
No 290
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=83.60 E-value=5.9 Score=42.09 Aligned_cols=114 Identities=25% Similarity=0.343 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeee-cCCCCCHHHHH
Q 007917 220 GLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTY-WGAVSSSFCGE 298 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~-~g~~~~~~~~~ 298 (585)
..+++++.+++.|++.++++++.|... ..+....+.+|++.+|..+-. .+. +. ..+...+.. .|... ....+
T Consensus 61 sWdeAl~~ia~~l~~~~~~~~~~~~~~-~~e~~~~~~~l~~~~g~~~~~--~~~--~~-~~~~~~~~~~~g~~~-~~~~d 133 (421)
T TIGR03129 61 SYEEAIEKAAEILKNAKRPLIYGWSST-SCEAQRAGLELAEKLGAVIDN--TAS--VC-HGPSLLALQEVGWPS-CTLGE 133 (421)
T ss_pred ChHHHHHHHHHHHHhhcCCeEEEcccC-CHHHHHHHHHHHHHHCCCccc--cch--hc-cccHHHHHHhcCCcc-ccHHH
Confidence 467889999999999988877655543 334556778999988863211 011 00 001100100 01111 11223
Q ss_pred HhhhCCEEEEeCCccCCcccccc-----------ccc-CCCcceEEEcCCceee
Q 007917 299 IVESADAYVFVGPIFNDYSSVGY-----------SLL-IKKEKAIIVQPHRVTV 340 (585)
Q Consensus 299 ~l~~aD~vl~lG~~~~~~~~~~~-----------~~~-~~~~~~i~id~~~~~~ 340 (585)
+..++|+||++|+.+.+.....+ ... .++.++|.||+.....
T Consensus 134 i~~~ad~il~~G~n~~~~~p~~~~r~~~~~~~~~~~~~~~g~~lividp~~s~t 187 (421)
T TIGR03129 134 VKNRADVIIYWGTNPMHAHPRHMSRYSVFPRGFFTQRGREDRTVIVVDPRKTDT 187 (421)
T ss_pred HhhcCCEEEEEccCccccCchHHhhhhhhhhhhhhhcccCCCEEEEECCCCCCc
Confidence 43479999999988644322111 111 2345889998865543
No 291
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=83.57 E-value=2.1 Score=41.95 Aligned_cols=68 Identities=15% Similarity=0.184 Sum_probs=43.2
Q ss_pred HHHHHhhhCCEEEEeCCccCCcccccccc--cCCCcceEEEcCCceeecCC-CccccccHHHHHHHHHHHh
Q 007917 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGNG-PSLGWVFMADFLSALAKKL 362 (585)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~~~~~~~~~-~~~~~~~~~~~l~~L~~~l 362 (585)
.+.+.+.++|++|++|+++.-.....+.. ..++.++|.|+.++..+... ...-..++..+|..|.+.+
T Consensus 170 ~a~~~~~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~~~~~~~l~~l~~~~ 240 (242)
T PRK00481 170 EAYEALEEADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLEPTPLDSLFDLVIHGKAGEVVPELVEEL 240 (242)
T ss_pred HHHHHHhcCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCCCCCCCCccCEEEECCHHHHHHHHHHHh
Confidence 35567789999999999875433222221 23466799999988755311 1222347888888876654
No 292
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=83.57 E-value=2.9 Score=42.47 Aligned_cols=111 Identities=16% Similarity=0.115 Sum_probs=70.3
Q ss_pred CEEEeCcccchhchHHHHHHHHHHhCCCeEEccCC---ccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccC
Q 007917 238 PVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSG---KGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFN 314 (585)
Q Consensus 238 pvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~g---kg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~ 314 (585)
.++-.|.|....+..+.+++||+.+|.-|-+|-.- .|.+|. ...+|.. |. .=.+|+.|.+|-+=.
T Consensus 197 vVVsgGRG~~~~E~~~l~eeLA~~LGaavg~SRp~vd~~gW~p~--~~QIGqT-Gk---------~V~P~lYiA~GISGa 264 (313)
T PRK03363 197 LVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEH--ERYVGIS-NL---------MLKPELYLAVGISGQ 264 (313)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhCCeEEecHHHHccCCCCCH--HheecCC-CC---------CcCccEEEEEccccH
Confidence 34556677777678899999999999999987532 246664 4456652 31 126799999996532
Q ss_pred CcccccccccCCCcceEEEcCCceee-cCCCcccc-ccHHHHHHHHHHHhc
Q 007917 315 DYSSVGYSLLIKKEKAIIVQPHRVTV-GNGPSLGW-VFMADFLSALAKKLR 363 (585)
Q Consensus 315 ~~~~~~~~~~~~~~~~i~id~~~~~~-~~~~~~~~-~~~~~~l~~L~~~l~ 363 (585)
-....+. .....+|-||.|+... -....|+. .|+.+++.+|.++++
T Consensus 265 iQH~~Gm---~~s~~IVAIN~Dp~APIF~~ADygiVgD~~eilP~L~e~l~ 312 (313)
T PRK03363 265 IQHMVGA---NASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALA 312 (313)
T ss_pred HHHHhhc---ccCCEEEEEcCCCCCCchhhCCeeEeeeHHHHHHHHHHHhh
Confidence 2222222 1233578898888631 01223333 389999999998864
No 293
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=83.47 E-value=2.8 Score=43.31 Aligned_cols=112 Identities=20% Similarity=0.262 Sum_probs=70.2
Q ss_pred CEEEeCcccchhchHHHHHHHHHHhCCCeEEccC--CccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCC
Q 007917 238 PVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFND 315 (585)
Q Consensus 238 pvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~--gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~ 315 (585)
.|+-.|.|....+..+.+++||+.||.-|-+|-. -.|.+|.+ ..+|.. |. .=.+|+.|.+|-+=.-
T Consensus 239 vVVsgGRGv~~~en~~l~eeLA~~LGaavGaSRp~vD~GW~p~~--~QIGqT-Gk---------~V~P~lYIA~GISGAi 306 (356)
T PLN00022 239 VVVTGGRGLKSAENFKMLEKLADKLGGAVGASRAAVDAGFVPND--LQVGQT-GK---------IVAPELYIAVGISGAI 306 (356)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHhCCceeccHHHHhCCCCChH--heeccC-CC---------CcCCcEEEEEecchHH
Confidence 3455566776667789999999999999888743 23566543 345552 21 1268999999965222
Q ss_pred cccccccccCCCcceEEEcCCceee-cCCCcccc-ccHHHHHHHHHHHhcc
Q 007917 316 YSSVGYSLLIKKEKAIIVQPHRVTV-GNGPSLGW-VFMADFLSALAKKLRK 364 (585)
Q Consensus 316 ~~~~~~~~~~~~~~~i~id~~~~~~-~~~~~~~~-~~~~~~l~~L~~~l~~ 364 (585)
....+. .....+|-||.|+... -....|+. .|+.+++.+|+++++.
T Consensus 307 QH~~Gm---~~s~~IVAIN~D~~APIF~~ADygIVgD~~evlP~Lie~lk~ 354 (356)
T PLN00022 307 QHLAGM---KDSKVIVAINKDADAPIFQVADYGLVADLFEAVPELLEKLPE 354 (356)
T ss_pred HHHhhc---ccCCEEEEECCCCCCCchhhcCeeEeeeHHHHHHHHHHHHHh
Confidence 222222 1233578898887631 01223333 3899999999998764
No 294
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=83.06 E-value=1.2 Score=47.20 Aligned_cols=88 Identities=26% Similarity=0.263 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhC---CCeEEcc-CCccCCCCCCCCc---eee-ecCCCCCHHH
Q 007917 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG---YPIAIMP-SGKGLVPEHHPHF---IGT-YWGAVSSSFC 296 (585)
Q Consensus 225 ~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~---~Pv~~t~-~gkg~~~~~hp~~---~G~-~~g~~~~~~~ 296 (585)
.++++++|..|+|.+|+-|+|..-+++..++++|++.|. .-|---. .--|..|.+-.-. .++ |+-...-++.
T Consensus 297 ~~~~a~~l~~A~~VvIVPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGHMNVLLAEa~VpYd~~~emdei 376 (463)
T PF02233_consen 297 AEEVAEMLANAKKVVIVPGYGMAVAQAQHAVAELADLLEERGVEVKFAIHPVAGRMPGHMNVLLAEANVPYDIVKEMDEI 376 (463)
T ss_dssp HHHHHHHHHH-SEEEEEESHHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-TTSSSSTTHHHHHHHHCT--GGGEEEHHHH
T ss_pred HHHHHHHHHhcCceEEecCchHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcceEEEEecCCCHHHHhhhhhc
Confidence 467889999999999999999998888888888887654 2221100 0011122100000 000 0111112466
Q ss_pred HHHhhhCCEEEEeCCc
Q 007917 297 GEIVESADAYVFVGPI 312 (585)
Q Consensus 297 ~~~l~~aD~vl~lG~~ 312 (585)
|+-+.+.|++|++|..
T Consensus 377 N~~f~~~Dv~lViGAN 392 (463)
T PF02233_consen 377 NPDFPDTDVVLVIGAN 392 (463)
T ss_dssp GGGGGG-SEEEEES-S
T ss_pred ccchhcCCEEEEeccc
Confidence 7778899999999975
No 295
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=82.04 E-value=4.6 Score=42.47 Aligned_cols=113 Identities=17% Similarity=0.177 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHhcC--CCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHH
Q 007917 220 GLEAAVEATADFLNKAV--KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCG 297 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~a~--rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~ 297 (585)
..+++++.+++.|++.+ +..++.|..... +....+.+|++.+|.+-+............ ....|. +..+. ..
T Consensus 70 sWdeAl~~ia~~l~~~~~~~i~~~~~~~~~~-e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~--~~~~~--~~ 143 (386)
T cd02768 70 SWEEALKTVAEGLKAVKGDKIGGIAGPRADL-ESLFLLKKLLNKLGSNNIDHRLRQSDLPAD-NRLRGN--YLFNT--SI 143 (386)
T ss_pred CHHHHHHHHHHHHHhcChhheEEEecCCCCH-HHHHHHHHHHHHhCCCCchhhhccccCccc-cccccC--cccCC--CH
Confidence 35788999999998876 566666654433 344678899999988765432111000000 000011 11111 12
Q ss_pred HHhhhCCEEEEeCCccCCccccccc---c-cC-CCcceEEEcCCce
Q 007917 298 EIVESADAYVFVGPIFNDYSSVGYS---L-LI-KKEKAIIVQPHRV 338 (585)
Q Consensus 298 ~~l~~aD~vl~lG~~~~~~~~~~~~---~-~~-~~~~~i~id~~~~ 338 (585)
.-++++|+||++|+.+.+.....+. . .. .+.++|.||+...
T Consensus 144 ~di~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~g~kli~idp~~t 189 (386)
T cd02768 144 AEIEEADAVLLIGSNLRKEAPLLNARLRKAVKKKGAKIAVIGPKDT 189 (386)
T ss_pred HHHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCeEEEECCCcc
Confidence 3457999999999876543321111 1 12 2568999998664
No 296
>PLN02573 pyruvate decarboxylase
Probab=81.80 E-value=30 Score=38.65 Aligned_cols=113 Identities=15% Similarity=0.031 Sum_probs=69.0
Q ss_pred HHhhhhhhhhcC-c-cEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhc
Q 007917 78 GYAADGYARSRG-V-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAI 155 (585)
Q Consensus 78 ~~~A~gyar~tg-~-~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 155 (585)
.-+|.|.+.+.. + .||++ ..-|+.=.+.-|..|...++|+++|.-.......-+. ...+......-.|...+.+.+
T Consensus 434 lpaaiGa~lA~p~r~vv~i~-GDG~f~m~~~EL~Ta~r~~lpvv~vV~NN~~yg~~~~-~~~~~~~~~~~~d~~~lA~a~ 511 (578)
T PLN02573 434 VGATLGYAQAAPDKRVIACI-GDGSFQVTAQDVSTMIRCGQKSIIFLINNGGYTIEVE-IHDGPYNVIKNWNYTGLVDAI 511 (578)
T ss_pred hhHHHHHHHhCCCCceEEEE-eccHHHhHHHHHHHHHHcCCCCEEEEEeCCceeEEEe-ecccCccccCCCCHHHHHHHh
Confidence 336677666653 4 44444 3333444568899999999999999987654321110 000000000112456677776
Q ss_pred e-----eEEEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCCC
Q 007917 156 T-----CSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (585)
Q Consensus 156 ~-----k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (585)
- .+..++++++++.+.+++|+.. ...||..|++..|-
T Consensus 512 G~~~g~~~~~~V~~~~eL~~al~~a~~~--~~~~p~lieV~v~~ 553 (578)
T PLN02573 512 HNGEGKCWTAKVRTEEELIEAIATATGE--KKDCLCFIEVIVHK 553 (578)
T ss_pred cCcCCceeEEEecCHHHHHHHHHHHHhh--CCCCcEEEEEEcCc
Confidence 2 5678899988888877777642 13789999999873
No 297
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=81.57 E-value=1.4 Score=49.51 Aligned_cols=114 Identities=17% Similarity=0.163 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHhcC---------------CC--EEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCC---CC
Q 007917 221 LEAAVEATADFLNKAV---------------KP--VLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPE---HH 280 (585)
Q Consensus 221 ~~~~~~~~~~~l~~a~---------------rp--vIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~---~h 280 (585)
.+++++++++.|++.+ +| +.+.|++....+..-.+.+|+..+|.+.+... ++-.... ..
T Consensus 73 WdeAld~iA~klk~i~~~~~~~~~~~g~~~~g~~si~~~gs~~~~nE~~~~~~kl~r~lGt~~id~~-ar~C~~~tv~~l 151 (649)
T cd02752 73 WDEALDEIARKMKDIRDASFVEKNAAGVVVNRPDSIAFLGSAKLSNEECYLIRKFARALGTNNLDHQ-ARIUHSPTVAGL 151 (649)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccCCCceEEEEccCCCCchHHHHHHHHHHHhCCCcccCC-cchhhhHHHHHH
Confidence 5678888888887643 34 45555543333445678899999998766432 2211000 00
Q ss_pred CCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccc----cCC-CcceEEEcCCcee
Q 007917 281 PHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSL----LIK-KEKAIIVQPHRVT 339 (585)
Q Consensus 281 p~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~-~~~~i~id~~~~~ 339 (585)
...+|. |...+ .. .-+++||+||++|+...+.....+.. ..+ +.++|.||+....
T Consensus 152 ~~~~G~--ga~tn-s~-~Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR~t~ 211 (649)
T cd02752 152 ANTFGR--GAMTN-SW-NDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPRFTR 211 (649)
T ss_pred HhhcCC--CCCCC-CH-HHHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCCCCc
Confidence 111222 11221 12 23588999999998865443322221 112 5689999987654
No 298
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=81.32 E-value=14 Score=41.15 Aligned_cols=123 Identities=12% Similarity=0.053 Sum_probs=73.7
Q ss_pred CeEEecCchhh---HHHhhhhhhhhcCc-cEEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCCccCCC----cc--
Q 007917 66 LNLVGCCNELN---AGYAADGYARSRGV-GACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNSNDYGT----NR-- 134 (585)
Q Consensus 66 i~~i~~~~E~~---A~~~A~gyar~tg~-~v~~~t~GpG~~n-~~~gl~~A~~~~~Pll~I~g~~~~~~~~~----~~-- 134 (585)
.+++..+.-.+ +.-+|.|++.+.++ .+|++ |=|... .++.+..|...++|+++|.-+.......+ ..
T Consensus 416 ~~~~~~~g~~~~G~~lpaaiGaala~~~~vv~i~--GDGsf~~~~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~ 493 (568)
T PRK07449 416 YPVYSNRGASGIDGLLSTAAGVARASAKPTVALI--GDLSFLHDLNGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEE 493 (568)
T ss_pred ceEEecCCccchhhHHHHHHHHHhcCCCCEEEEe--chHHhhcCcHHHHhhcccCCCeEEEEEECCCCccccCCCCCCCc
Confidence 55665443322 45577888777555 44443 434333 45888889999999999988766422100 00
Q ss_pred -ceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCCC
Q 007917 135 -ILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (585)
Q Consensus 135 -~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (585)
.....++.....|..++.+.+-....++.+++++...+++|+ ..+||+.|++..|-
T Consensus 494 ~~~~~~~~~~~~~df~~lA~a~G~~~~~V~~~~eL~~al~~a~----~~~~p~lIev~id~ 550 (568)
T PRK07449 494 PVFERFFGTPHGVDFAHAAAMYGLEYHRPETWAELEEALADAL----PTPGLTVIEVKTNR 550 (568)
T ss_pred chhhHhhcCCCCCCHHHHHHHcCCCccCCCCHHHHHHHHHHHh----cCCCCEEEEEeCCh
Confidence 000011111113456677777666778888877766666664 45799999998763
No 299
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=80.92 E-value=18 Score=35.94 Aligned_cols=156 Identities=14% Similarity=0.069 Sum_probs=88.4
Q ss_pred ccHHHHHHHHHHHcC---CCEEEecCCCChHHHHHhhh-cCCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcchH
Q 007917 27 GTLGRHLARRLVEIG---AKDVFSVPGDFNLTLLDHLI-AEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGL 102 (585)
Q Consensus 27 ~~~a~~i~~~L~~~G---v~~vFg~PG~~~~~l~~al~-~~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~ 102 (585)
.+..+.+.+.|.+.| -+-|.-.-......=+..+. +.|+=-+=..--||+...+|.|.|....+..+ +|.++=++
T Consensus 7 ~~~R~~~g~~L~~l~~~~~diVvl~ADl~~St~~~~f~~~fPdR~~NvGIaEQ~mvg~AAGLA~~Gk~Pfv-~tfa~F~s 85 (312)
T COG3958 7 ESLRKVYGETLAELGRKNSDIVVLDADLSSSTKTGYFAKEFPDRFFNVGIAEQDMVGTAAGLALAGKKPFV-STFAAFLS 85 (312)
T ss_pred hHHHHHHHHHHHHHHhcCCCEEEEecccccccchhHHHHhCchhheecchHHHHHHHHHHHHHhcCCCcee-echHHHHH
Confidence 345566666665554 44444433322222222222 23442334667899999999999987655433 34444333
Q ss_pred -HHHHHHHHhh-hcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhh
Q 007917 103 -SVLNAIAGAY-SENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTAL 180 (585)
Q Consensus 103 -n~~~gl~~A~-~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~ 180 (585)
-+.-=|.++- +++.||=++...........+ .+||......+++.+.......+. +.. ..+.++..+.
T Consensus 86 ~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG-------~sHq~~EDiaimR~lpn~~V~~P~--D~v-~~~~i~~~~~ 155 (312)
T COG3958 86 RRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDG-------SSHQALEDIAIMRGLPNMTVIAPA--DAV-ETRAILDQIA 155 (312)
T ss_pred HHHHHHHHHHhhhccCCeEEEEecCCcccCCCC-------ccchhHHHHHHHhcCCCceEEccC--cHH-HHHHHHHHHH
Confidence 2233333322 466776666665444311111 134566668999998876654442 222 5666777777
Q ss_pred hcCCcEEEEecCC
Q 007917 181 KESKPVYISISCN 193 (585)
Q Consensus 181 ~~~gPV~i~iP~d 193 (585)
..+||||+.+..+
T Consensus 156 ~~~GP~Y~Rl~R~ 168 (312)
T COG3958 156 DYKGPVYMRLGRG 168 (312)
T ss_pred hcCCCEEEEecCC
Confidence 7799999999983
No 300
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=79.97 E-value=28 Score=33.81 Aligned_cols=95 Identities=19% Similarity=0.104 Sum_probs=56.3
Q ss_pred CCcch--HHHHHHHHHhhhcCCcEEEEeCCCCCccCC--Cccc----eee----ccCC------CChHHHHHHhhhce-e
Q 007917 97 FTVGG--LSVLNAIAGAYSENLPVICIVGGPNSNDYG--TNRI----LHH----TIGL------PDFTQELRCFQAIT-C 157 (585)
Q Consensus 97 ~GpG~--~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~--~~~~----~~~----~~~~------~~~~d~~~~~~~~~-k 157 (585)
.|=|. .-.+..|..|...++|+++|.-+......- .... ... ..+. ..-.|...+.+.+- +
T Consensus 87 ~GDG~~~~m~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~iA~a~G~~ 166 (235)
T cd03376 87 AGDGGTADIGFQALSGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDLPLIMAAHNIP 166 (235)
T ss_pred EcCchHHhhHHHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccCCHHHHHHHcCCc
Confidence 34444 245788999999999999999876653210 0000 000 0000 01135566776663 3
Q ss_pred E--EEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCCCC
Q 007917 158 S--QAVVNNLGDAHELIDTAISTALKESKPVYISISCNLP 195 (585)
Q Consensus 158 ~--~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~ 195 (585)
+ ..++.+++++.+.+++|+. .+||+.|++..+-+
T Consensus 167 ~~~~~~v~~~~el~~al~~a~~----~~gP~lIev~~~C~ 202 (235)
T cd03376 167 YVATASVAYPEDLYKKVKKALS----IEGPAYIHILSPCP 202 (235)
T ss_pred EEEEEcCCCHHHHHHHHHHHHh----CCCCEEEEEECCCC
Confidence 3 2467777777666666664 57999999987653
No 301
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=79.90 E-value=8.8 Score=39.01 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCcccchhc--------hHHHHHHHHHHhCCCeEEccCCccCC---CC------CCCCce
Q 007917 222 EAAVEATADFLNKAVKPVLVGGPNIRVAK--------AQKAFIELADATGYPIAIMPSGKGLV---PE------HHPHFI 284 (585)
Q Consensus 222 ~~~~~~~~~~l~~a~rpvIi~G~g~~~~~--------a~~~l~~lae~l~~Pv~~t~~gkg~~---~~------~hp~~~ 284 (585)
.+.+.++++++++++..+|+.|-|..++. +...+++|=|..++-+... .|...+ .+ ..|+.+
T Consensus 232 ~~~i~e~a~~mKna~Fg~if~GlGlt~S~gk~rN~e~a~~Lv~~LNe~ak~tli~m-rgH~Nv~GFnqv~~~e~GYpf~v 310 (429)
T COG1029 232 IEEIEELADMMKNAKFGAIFVGLGLTSSRGKHRNVENAINLVKDLNEYAKFTLIPM-RGHYNVTGFNEVLSWETGYPFAV 310 (429)
T ss_pred HHHHHHHHHHHhcCCcceEEEeeceeecccccccHHHHHHHHHHHhhhceEEEEEe-ccccccccccchhhhhhCCceee
Confidence 35688999999999999999999998762 3445555555555443331 111111 00 112221
Q ss_pred eeecCC----CCCHHHHHHh--hhCCEEEEeCCccCCcccccccccCCCcceEEEcCCce
Q 007917 285 GTYWGA----VSSSFCGEIV--ESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRV 338 (585)
Q Consensus 285 G~~~g~----~~~~~~~~~l--~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~ 338 (585)
-.-.|. -|.-.+.++| +++|..|++|+.+.......-........+|+||+.+.
T Consensus 311 dF~rG~prynPgE~s~vdlL~~k~vDAalvi~sDp~ah~P~~~~~~l~eIPvI~iDp~~~ 370 (429)
T COG1029 311 DFSRGYPRYNPGEFSAVDLLKRKEVDAALVIASDPGAHFPRDAVEHLAEIPVICIDPHPT 370 (429)
T ss_pred ecccCCcCCCcccccHHHHHhccCCCeEEEEecCccccChHHHHHHhhcCCEEEecCCCC
Confidence 111110 0112456777 47999999998754322211111233557899988654
No 302
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=79.77 E-value=8.5 Score=38.13 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=56.9
Q ss_pred cEEEEEcCch--hH------hHHHHHHhCCCeEEEEEeCC--ceeeeeeecCCCCCCCCCCCHHHHHHHhcCCCCCccEE
Q 007917 459 RVIACIGDGS--FQ------EISTMIRCGQRSIIFLINNG--GYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTA 528 (585)
Q Consensus 459 ~vv~v~GDGs--f~------eL~ta~~~~lpv~ivV~NN~--~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~ 528 (585)
+++.++-||. +. .+..+.+.++-+.+|+++|. +-+|.... .-.|..-.......+-+.|+.+ +|.
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~-~~~~~~~~~~~l~~Yl~~fpfp----Yy~ 240 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIK-VVSFKNDKSGVITPYLDEFPFP----YYV 240 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCccccc-ccccCCCCccHHHHHHhcCCCC----eEE
Confidence 8999999999 54 34556678999999999997 33332111 1112211112678889999984 566
Q ss_pred EecCHHHHHHHHHHhhh
Q 007917 529 KVRSEDELTEAMKTATG 545 (585)
Q Consensus 529 ~v~~~~eL~~al~~a~~ 545 (585)
-|.+.++|...|..++.
T Consensus 241 ~~~~~~~lp~~l~~~lr 257 (266)
T cd01460 241 IVRDLNQLPSVLSDALR 257 (266)
T ss_pred EecChhHhHHHHHHHHH
Confidence 77899999999988763
No 303
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=78.99 E-value=4 Score=39.91 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=42.4
Q ss_pred HHHHHhhhCCEEEEeCCccCCcccccccc--cCCCcceEEEcCCceeecCC-CccccccHHHHHHHHHHHh
Q 007917 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGNG-PSLGWVFMADFLSALAKKL 362 (585)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~~~~~~~~~-~~~~~~~~~~~l~~L~~~l 362 (585)
...+++.++|++|++|+++.-..-..+-. ...+.++|.|++++...... ......++..+|.+|.+++
T Consensus 165 ~~~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~~~~~~~~~i~g~~~~~l~~l~~~~ 235 (242)
T PTZ00408 165 EIESVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNYSQFDESIYGKASVIVPAWVDRV 235 (242)
T ss_pred HHHHHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCCCCCccCCEEEECCHHHHHHHHHHHH
Confidence 45567899999999999986444332221 12356788999887544311 1112236778888876654
No 304
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=78.26 E-value=3.8 Score=44.31 Aligned_cols=117 Identities=15% Similarity=0.041 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHhc------CCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCC
Q 007917 220 GLEAAVEATADFLNKA------VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSS 293 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~a------~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~ 293 (585)
..+++++.+++.|++. +...++.|.+...........+|+..+|.|-+......+..+......+|.. ..+
T Consensus 86 sWdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gs~~~~~~~~~~~~~~~~~~~~G~~--~~~- 162 (461)
T cd02750 86 SWDEALELIADAIIDTIKKYGPDRVIGFSPIPAMSMVSYAAGSRFASLIGGVSLSFYDWYGDLPPGSPQTWGEQ--TDV- 162 (461)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCceEEeeccCCcccchhhHHHHHHHHhcCCccCCCCCcccchhhhhhhhcCCC--CCC-
Confidence 3567788888877632 2223333323222223445678988889776543322221222233333321 111
Q ss_pred HHHHHHhhhCCEEEEeCCccCCccccccccc----CCCcceEEEcCCceee
Q 007917 294 SFCGEIVESADAYVFVGPIFNDYSSVGYSLL----IKKEKAIIVQPHRVTV 340 (585)
Q Consensus 294 ~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~----~~~~~~i~id~~~~~~ 340 (585)
....-+.+||+||++|+...+.....+..+ .++.++|.||+.....
T Consensus 163 -~~~~d~~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr~s~t 212 (461)
T cd02750 163 -PESADWYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPDYSPS 212 (461)
T ss_pred -CChhHHhcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCCCCcc
Confidence 123446899999999987644332221111 2456899999876544
No 305
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=77.68 E-value=7.2 Score=40.89 Aligned_cols=111 Identities=16% Similarity=0.062 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHhcC--CCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHH
Q 007917 220 GLEAAVEATADFLNKAV--KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCG 297 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~a~--rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~ 297 (585)
..+++++.+++.|++.+ ...++.|.... .+....+++|++.+|.+-+.+.......+. .++. ...++. ...
T Consensus 69 sWdeAl~~ia~~l~~~~~~si~~~~g~~~~-~e~~~~~~~~~~~~gs~~~~~~~~~~~~~~----~~~~-~~~~~~-~~~ 141 (375)
T cd02773 69 TWEEALAAIAKALKGVKPDEIAAIAGDLAD-VESMVALKDLLNKLGSENLACEQDGPDLPA----DLRS-NYLFNT-TIA 141 (375)
T ss_pred CHHHHHHHHHHHHhhcCcCcEEEEeCCCCC-HHHHHHHHHHHHHhCCCccccccccccccc----cccc-ccccCC-CHH
Confidence 46788999999998765 55666554333 244567889999999876654322111111 1110 000111 122
Q ss_pred HHhhhCCEEEEeCCccCCcc-ccccc---cc-CCCcceEEEcCCce
Q 007917 298 EIVESADAYVFVGPIFNDYS-SVGYS---LL-IKKEKAIIVQPHRV 338 (585)
Q Consensus 298 ~~l~~aD~vl~lG~~~~~~~-~~~~~---~~-~~~~~~i~id~~~~ 338 (585)
-+.++|+||++|+.+.+.. ...+. .. ..+.++|.||+...
T Consensus 142 -di~~ad~il~~G~N~~~~~p~~~~~~~~~~~~~g~kli~idp~~~ 186 (375)
T cd02773 142 -GIEEADAVLLVGTNPRFEAPVLNARIRKAWLHGGLKVGVIGPPVD 186 (375)
T ss_pred -HHhhCCEEEEEcCCcchhchHHHHHHHHHHHcCCCEEEEEcCccc
Confidence 3589999999998764332 11111 11 13568999987653
No 306
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=77.45 E-value=59 Score=36.61 Aligned_cols=152 Identities=13% Similarity=0.124 Sum_probs=86.0
Q ss_pred ccHHHHHHHHHHHcCCC--EEEe----cCCCChHHHHHhhh-cCCCCeEE-ecCchhhHHHhhhhhhhhcCccEEEEeCC
Q 007917 27 GTLGRHLARRLVEIGAK--DVFS----VPGDFNLTLLDHLI-AEPELNLV-GCCNELNAGYAADGYARSRGVGACVVTFT 98 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~--~vFg----~PG~~~~~l~~al~-~~~~i~~i-~~~~E~~A~~~A~gyar~tg~~v~~~t~G 98 (585)
++..+++.+.|.+..-+ .|+. ++|+.. ++.+. +.|+ |++ ...-|++++.+|.|.|....+.+|.+ ..
T Consensus 357 ~sy~~af~~aL~e~a~~D~~Iv~l~adm~ggt~---~~~f~~~fPd-R~fdvGIAEq~~Vg~AaGLA~~G~rPvv~~-fs 431 (641)
T PLN02234 357 QSYTSCFVEALIAEAEADKDIVAIHAAMGGGTM---LNLFESRFPT-RCFDVGIAEQHAVTFAAGLACEGLKPFCTI-YS 431 (641)
T ss_pred CCHHHHHHHHHHHHHHHCcCEEEEECCCCCCcc---hHHHHHHccc-cccCCCcCHHHHHHHHHHHHHCCCeEEEEe-hH
Confidence 57778888887766542 3333 344332 23332 2233 444 56789999999999999543466654 44
Q ss_pred cchHHHHHHHH-HhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEE-EEecCcchhHHHHHHHH
Q 007917 99 VGGLSVLNAIA-GAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDTAI 176 (585)
Q Consensus 99 pG~~n~~~gl~-~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~l~~A~ 176 (585)
+=+.-++.-|. ++...+.|++++.-... . .+.+..-|+ ...+..+++.+.-.. ....++.++..+++.|+
T Consensus 432 ~Fl~RA~DQI~~dva~~~lpV~~v~~~aG-~-~g~dG~TH~------~~~Dia~lr~iPnl~V~~Psd~~E~~~~l~~a~ 503 (641)
T PLN02234 432 SFMQRAYDQVVHDVDLQKLPVRFAIDRAG-L-MGADGPTHC------GAFDVTFMACLPNMIVMAPSDEAELFNMVATAA 503 (641)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEeCCc-c-CCCCCcccc------ccHHHHHHhcCCCCEEEeeCCHHHHHHHHHHHH
Confidence 33334444442 34578999887752222 1 222222232 233467777654433 23456666655555443
Q ss_pred HHhhhcCCcEEEEecCCC
Q 007917 177 STALKESKPVYISISCNL 194 (585)
Q Consensus 177 ~~a~~~~gPV~i~iP~dv 194 (585)
. ...+||+|..|...
T Consensus 504 ~---~~~~Pv~ir~~R~~ 518 (641)
T PLN02234 504 A---IDDRPSCFRYHRGN 518 (641)
T ss_pred h---CCCCCEEEEeeccc
Confidence 2 23699999999764
No 307
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=76.73 E-value=43 Score=33.81 Aligned_cols=123 Identities=16% Similarity=0.048 Sum_probs=66.7
Q ss_pred CCeEEecCchhhHHHhhhhhhhh---cC--ccEEEEeCCcchHH--HHHHHHHhhhcCCcEEEEeCCCCCccCCCcccee
Q 007917 65 ELNLVGCCNELNAGYAADGYARS---RG--VGACVVTFTVGGLS--VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILH 137 (585)
Q Consensus 65 ~i~~i~~~~E~~A~~~A~gyar~---tg--~~v~~~t~GpG~~n--~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~ 137 (585)
++.++.+.++.+++.++ |.+++ .+ ...+++..|=|.++ .+.++..|...+.|+++|.=+...... ++.+.+
T Consensus 63 ~~~~i~~~~G~~~~~A~-G~a~A~~~~~~~~~~Vva~~GDG~~~~~g~~~l~~A~~~~~~v~~vv~dN~~~~~-TGgQ~S 140 (300)
T PRK11864 63 TVPVLHTAFAATAAVAS-GIEEALKARGEKGVIVVGWAGDGGTADIGFQALSGAAERNHDILYIMYDNEAYMN-TGIQRS 140 (300)
T ss_pred cccceeehhhChHHHHH-HHHHHHHhhCCCCcEEEEEEccCccccccHHHHHHHHHhCcCEEEEEECCeeeec-CCCCCC
Confidence 56777888887665443 44443 22 22333345555432 569999999999999999876443211 110000
Q ss_pred ec-----------cCCC-ChHHHHHHhhhc-eeEEEEecCcchhHHHHHHHHHHhhhcCCcEEEEec
Q 007917 138 HT-----------IGLP-DFTQELRCFQAI-TCSQAVVNNLGDAHELIDTAISTALKESKPVYISIS 191 (585)
Q Consensus 138 ~~-----------~~~~-~~~d~~~~~~~~-~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP 191 (585)
-+ .|.. .-.|...++..+ ..|..++.. .+ +..+.++++.|...+||.+|.+=
T Consensus 141 ~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g~~yVA~~~~-~~-~~~~~~~i~~A~~~~Gps~I~~~ 205 (300)
T PRK11864 141 SSTPYGAWTTTTPGGKREHKKPVPDIMAAHKVPYVATASI-AY-PEDFIRKLKKAKEIRGFKFIHLL 205 (300)
T ss_pred CCCcCCCccccCCCCCcCCCCCHHHHHHHcCCCEEEEEeC-CC-HHHHHHHHHHHHhCCCCEEEEEe
Confidence 00 0100 112445555543 345555442 22 34456666666667899999864
No 308
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=76.53 E-value=20 Score=33.80 Aligned_cols=103 Identities=13% Similarity=0.138 Sum_probs=64.4
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHH--HHHhhhc-----CCCCeEEecCchhhHHH-hh--hhh----hhh---c
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLT--LLDHLIA-----EPELNLVGCCNELNAGY-AA--DGY----ARS---R 88 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~--l~~al~~-----~~~i~~i~~~~E~~A~~-~A--~gy----ar~---t 88 (585)
....++.+++.|.+.|-=++||+-|+.... +...|.. +++++.+....+..-.. .| .|| +|. .
T Consensus 27 i~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~~~~~f~~ql~~~ 106 (196)
T PRK10886 27 ISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRAL 106 (196)
T ss_pred HHHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhccccHHHHHHHHHHHc
Confidence 346778888999888988999997775433 3322321 35677774433322111 11 122 221 2
Q ss_pred C-c-cEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCCCCc
Q 007917 89 G-V-GACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNSN 128 (585)
Q Consensus 89 g-~-~v~~~t~GpG-~~n~~~gl~~A~~~~~Pll~I~g~~~~~ 128 (585)
. + -++++.|+.| .-|++.++.-|+..+.|+|.||+.....
T Consensus 107 ~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~ 149 (196)
T PRK10886 107 GHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGE 149 (196)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCh
Confidence 2 2 3555555555 5679999999999999999999976544
No 309
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=75.62 E-value=17 Score=36.47 Aligned_cols=158 Identities=15% Similarity=0.005 Sum_probs=79.1
Q ss_pred cHHHHHHHHHHHcCCC---EEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcC-c-cEEEEeCCcchH
Q 007917 28 TLGRHLARRLVEIGAK---DVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-V-GACVVTFTVGGL 102 (585)
Q Consensus 28 ~~a~~i~~~L~~~Gv~---~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg-~-~v~~~t~GpG~~ 102 (585)
.+-.+|.+.|.+.|++ .|+. -|......+-... ....+...| .-+.-+|.|.+.+.. + .++++-=|-++.
T Consensus 27 ~il~~l~~al~~l~~~p~d~vvv-sdiGc~~~~~~~~---~~~~~~g~m-G~alpaAiGaklA~Pd~~VV~i~GDG~~f~ 101 (286)
T PRK11867 27 SILAALQRALAELGLDPENVAVV-SGIGCSGRLPGYI---NTYGFHTIH-GRALAIATGLKLANPDLTVIVVTGDGDALA 101 (286)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEE-eCCccccccCccc---cccchhhhh-hcHHHHHHHHHHhCCCCcEEEEeCccHHHh
Confidence 3556777888877764 2332 2222222111111 111122333 345557778776654 3 344433332344
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCccCCCccce------e----eccCCCC-hHHHHHHhhhcee-EEE--EecCcchh
Q 007917 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRIL------H----HTIGLPD-FTQELRCFQAITC-SQA--VVNNLGDA 168 (585)
Q Consensus 103 n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~------~----~~~~~~~-~~d~~~~~~~~~k-~~~--~v~~~~~~ 168 (585)
-.++.+..|.+.++|+++|.-+......-+++.. . ...+..+ -.|...+...+-. +.. .+.+++++
T Consensus 102 mg~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el 181 (286)
T PRK11867 102 IGGNHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQL 181 (286)
T ss_pred CCHHHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHH
Confidence 5678899999999999999876543311111000 0 0011111 1244555554422 222 24455555
Q ss_pred HHHHHHHHHHhhhcCCcEEEEecCCC
Q 007917 169 HELIDTAISTALKESKPVYISISCNL 194 (585)
Q Consensus 169 ~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (585)
...|++| ...+||++|++..+-
T Consensus 182 ~~al~~A----l~~~Gp~lIev~~~C 203 (286)
T PRK11867 182 TELIKAA----INHKGFSFVEILQPC 203 (286)
T ss_pred HHHHHHH----HhCCCCEEEEEeCCC
Confidence 5555554 456899999998665
No 310
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=75.61 E-value=3.5 Score=40.13 Aligned_cols=64 Identities=13% Similarity=-0.018 Sum_probs=37.2
Q ss_pred HHHHHhhhCCEEEEeCCccCCccccccc-ccCCCcceEEEcCCceeec--C-CCccccccHHHHHHHH
Q 007917 295 FCGEIVESADAYVFVGPIFNDYSSVGYS-LLIKKEKAIIVQPHRVTVG--N-GPSLGWVFMADFLSAL 358 (585)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~-~~~~~~~~i~id~~~~~~~--~-~~~~~~~~~~~~l~~L 358 (585)
.+.+.+++||++|+||+++.-..-..+- ....+.++|.|++++.... . ..+....++.++|+.|
T Consensus 168 ~~~~~~~~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN~~~~~~~~~~~~d~~~~~~~~~~l~~~ 235 (235)
T cd01408 168 HMEEDKEEADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINREPVGHLGKRPFDVALLGDCDDGVREL 235 (235)
T ss_pred HHHHHHhcCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEeCCCCCCCCCCCcCEEEeCCHHHHHHhC
Confidence 3446678999999999997644322221 1123457888888775432 1 1122234566776653
No 311
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=75.54 E-value=7.1 Score=43.86 Aligned_cols=114 Identities=13% Similarity=0.057 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHH
Q 007917 220 GLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEI 299 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~ 299 (585)
..+++++.+++.|++.++..++.|..... +....+.+|++.+|.+-+.......... ..+...+. ..+. ...-
T Consensus 287 sWdeAl~~ia~kL~~i~~va~~~~~~~~~-e~~~~~~~~~~~lGt~~~~~~~~~~~~~-~~~~~~~~---~~g~--~~~d 359 (603)
T TIGR01973 287 SWAEALAIAAEKLKASSRIGGIAGPRSSL-EELFALKKLVRKLGSENFDLRIRNYEFE-SADLRANY---LFNT--TLAD 359 (603)
T ss_pred CHHHHHHHHHHHHhccCcEEEEeCCCCCH-HHHHHHHHHHHHhCCCcccccccccccc-cchhhccc---ccCC--CHHH
Confidence 45778889999998876666666654432 3445788999998866443221110000 00111111 1111 2234
Q ss_pred hhhCCEEEEeCCccCCcccccccc----cCCC-cceEEEcCCceee
Q 007917 300 VESADAYVFVGPIFNDYSSVGYSL----LIKK-EKAIIVQPHRVTV 340 (585)
Q Consensus 300 l~~aD~vl~lG~~~~~~~~~~~~~----~~~~-~~~i~id~~~~~~ 340 (585)
+.++|+||++|+.+.+.....+.. ..++ .++|.||+.....
T Consensus 360 i~~ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklividpr~s~t 405 (603)
T TIGR01973 360 IEEADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGIEKWNL 405 (603)
T ss_pred HHhCCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEECCccccc
Confidence 678999999998865543322111 1123 6899999865544
No 312
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=75.53 E-value=9.3 Score=38.63 Aligned_cols=111 Identities=19% Similarity=0.236 Sum_probs=70.8
Q ss_pred EEEeCcccchhchHHHHHHHHHHhCCCeEEccC--CccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCc
Q 007917 239 VLVGGPNIRVAKAQKAFIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDY 316 (585)
Q Consensus 239 vIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~--gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~ 316 (585)
++-.|.|....+..+.+.+||+.||+-|-+|-. -.|.+|.++ .+|.. |. .-.+|+-|++|-+=.-.
T Consensus 198 VVsgGRG~gs~enf~~i~~LA~~LGa~VGaSRp~vd~gw~p~d~--QVGqT-Gk---------~V~P~LYIA~GISGAiQ 265 (313)
T COG2025 198 VVSGGRGLGSKENFKLLEELADVLGAAVGASRPAVDAGWMPNDR--QVGQT-GK---------TVAPKLYIALGISGAIQ 265 (313)
T ss_pred EEEcCcccCChhhhHHHHHHHHHhCceeeccHHHHhcCCCCccc--eecCC-Cc---------EecccEEEEEecccHHH
Confidence 555667777667778899999999999988753 257777665 45552 21 23689999999542211
Q ss_pred ccccccccCCCcceEEEcCCceee-cCCCcccc-ccHHHHHHHHHHHhcc
Q 007917 317 SSVGYSLLIKKEKAIIVQPHRVTV-GNGPSLGW-VFMADFLSALAKKLRK 364 (585)
Q Consensus 317 ~~~~~~~~~~~~~~i~id~~~~~~-~~~~~~~~-~~~~~~l~~L~~~l~~ 364 (585)
...+. .....+|-|+.|+... -+...|+. .|+..++.+|.+.++.
T Consensus 266 HlaGm---~~Sk~IVAINkD~nAPIF~~ADyGiVgDl~~ivP~Lie~l~~ 312 (313)
T COG2025 266 HLAGM---KDSKVIVAINKDPNAPIFQVADYGIVGDLFKIVPALIEALKK 312 (313)
T ss_pred HHhhc---ccCcEEEEEcCCCCCCccccCCeeeeeeHHHHHHHHHHHHhc
Confidence 11222 1233577888887531 01223443 3889999999998753
No 313
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=75.36 E-value=20 Score=37.35 Aligned_cols=108 Identities=13% Similarity=0.067 Sum_probs=61.4
Q ss_pred HHHhhhhhhhhcCc-cEEEEeCCcchHH---HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHh
Q 007917 77 AGYAADGYARSRGV-GACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCF 152 (585)
Q Consensus 77 A~~~A~gyar~tg~-~v~~~t~GpG~~n---~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 152 (585)
|+.+|.+. |..|. .++++..|=|++| ..-++.-|..-+.|+|+|+-+.... .+... ..+.. ..+.....
T Consensus 147 A~G~A~A~-k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~~a-ist~~----~~~~~-~~~~~~~~ 219 (362)
T PLN02269 147 GAGLAFAQ-KYNKEENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNHYG-MGTAE----WRAAK-SPAYYKRG 219 (362)
T ss_pred HHHHHHHH-HHhCCCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCCCEe-ccCch----hhhcc-chHHHHhh
Confidence 34444442 33444 7788888877666 5666777788899999988764322 11100 00000 00111101
Q ss_pred hhceeEEEEecCcchhHHHHHHHHHHhhhcCCcEEEEecC
Q 007917 153 QAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISC 192 (585)
Q Consensus 153 ~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~ 192 (585)
..+.-....=.++..+.+.+.+|++.+.. .||+.|++-.
T Consensus 220 ~~~p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lIe~~t 258 (362)
T PLN02269 220 DYVPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEMDT 258 (362)
T ss_pred cCCCeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEEEEec
Confidence 11222233334677788888888888888 8999999753
No 314
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=75.27 E-value=17 Score=36.46 Aligned_cols=150 Identities=17% Similarity=0.047 Sum_probs=77.5
Q ss_pred HHHHHHHHHcCCC---EEEe-cCCCChHHHHHhhhcCCC---CeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcchH-
Q 007917 31 RHLARRLVEIGAK---DVFS-VPGDFNLTLLDHLIAEPE---LNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGL- 102 (585)
Q Consensus 31 ~~i~~~L~~~Gv~---~vFg-~PG~~~~~l~~al~~~~~---i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~- 102 (585)
.+|.++|.+.|++ .++. =.|.+. +.+. .....+.| ..+.-+|.|...+...--|++..|=|..
T Consensus 14 ~~~~~a~~~l~~~p~d~iivsdiGc~~--------~~~~~l~~~~~~t~m-G~alPaAiGaklA~Pd~~VVai~GDG~f~ 84 (287)
T TIGR02177 14 SALQRALAELNLDPEQVVVVSGIGCSA--------KTPHYVNVNGFHGLH-GRALPVATGIKLANPHLKVIVVGGDGDLY 84 (287)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCccc--------ccCCeEecCCccccc-ccHHHHHHHHHHHCCCCcEEEEeCchHHH
Confidence 5677888888873 3222 223321 1111 11222333 4566688887776543222233344442
Q ss_pred -HHHHHHHHhhhcCCcEEEEeCCCCCccCCCccce--------e--eccCC---CChHHHHHHhhhceeEEEE-ecCcch
Q 007917 103 -SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRIL--------H--HTIGL---PDFTQELRCFQAITCSQAV-VNNLGD 167 (585)
Q Consensus 103 -n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~--------~--~~~~~---~~~~d~~~~~~~~~k~~~~-v~~~~~ 167 (585)
-.++.+..|.+.++|+++|.-+......-+++.. . ...+. .-..+...+...+...... ..++++
T Consensus 85 ~mg~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~~~~~e 164 (287)
T TIGR02177 85 GIGGNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFSGDVAH 164 (287)
T ss_pred hccHHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEEecCCHHH
Confidence 3467799999999999999876443211111000 0 00010 0012445666666433332 356655
Q ss_pred hHHHHHHHHHHhhhcCCcEEEEecCC
Q 007917 168 AHELIDTAISTALKESKPVYISISCN 193 (585)
Q Consensus 168 ~~~~l~~A~~~a~~~~gPV~i~iP~d 193 (585)
+.+.|++ |...+||++|++..-
T Consensus 165 L~~ai~~----Al~~~GpslIeV~~p 186 (287)
T TIGR02177 165 LKEIIKE----AINHKGYALVDILQP 186 (287)
T ss_pred HHHHHHH----HHhCCCCEEEEEeCC
Confidence 5555555 555689999998744
No 315
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=74.18 E-value=29 Score=32.06 Aligned_cols=101 Identities=19% Similarity=0.159 Sum_probs=61.7
Q ss_pred hHHHHHHHhhhcC-CCcEEEEEcCchh----H---hHH-HHHHhCCCeEEEEEeCC-ceeeeeeecCCCCCCCCCCCHHH
Q 007917 444 SVGATLGYAQAAK-DKRVIACIGDGSF----Q---EIS-TMIRCGQRSIIFLINNG-GYTIEVEIHDGPYNVIKNWDYTG 513 (585)
Q Consensus 444 ~lpaAiGaalA~p-~~~vv~v~GDGsf----~---eL~-ta~~~~lpv~ivV~NN~-~~~~~~~~~~~~~~~~~~~d~~~ 513 (585)
.++.|.|.+++.+ -.+++.-.+|=.. . .+. .....++|+. |+..-+ +++. ++ ..=+..+...
T Consensus 60 ~vg~a~GlA~~G~~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~-----~G--~tH~s~~d~~ 131 (178)
T PF02779_consen 60 MVGMAAGLALAGGLRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGG-----DG--GTHHSIEDEA 131 (178)
T ss_dssp HHHHHHHHHHHSSSEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGST-----TG--TTTSSSSHHH
T ss_pred ccceeeeeeecccccceeEeeccccccccchhhhhhhhhhhhcccceec-ceeecCccccc-----cc--cccccccccc
Confidence 5788888888743 3445556666555 1 222 3456788988 444433 2332 11 1113445666
Q ss_pred HHHHh-cCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEE
Q 007917 514 LVNAI-HNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVF 557 (585)
Q Consensus 514 la~a~-G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~ 557 (585)
+-+++ |+ +.+...++.|++.+++.+++.+.++|++|-..
T Consensus 132 ~~~~iPg~-----~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~ 171 (178)
T PF02779_consen 132 ILRSIPGM-----KVVVPSDPAEAKGLLRAAIRRESDGPVYIREP 171 (178)
T ss_dssp HHHTSTTE-----EEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEE
T ss_pred cccccccc-----ccccCCCHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 66666 55 78888999999999999985225699998654
No 316
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=74.04 E-value=69 Score=37.39 Aligned_cols=182 Identities=13% Similarity=0.050 Sum_probs=106.0
Q ss_pred CCCeEEecCchhhHHH--hhhhhhhhc-Cc--cEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCcccee
Q 007917 64 PELNLVGCCNELNAGY--AADGYARSR-GV--GACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILH 137 (585)
Q Consensus 64 ~~i~~i~~~~E~~A~~--~A~gyar~t-g~--~v~~~t~GpG-~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~ 137 (585)
++=-+-....|++++. +|.|-|..+ |+ -.+.++..+= ..=+.--+-.+-..+.++.+|.+.......+....-|
T Consensus 559 p~R~ie~GIAEqnmv~~~iAAGlA~a~~G~g~iPf~~tya~F~~~Ra~Dqir~a~~~~a~v~lvG~~aG~tTlg~eG~tH 638 (889)
T TIGR03186 559 DGQILEEGISEAGAISSWIAAATSYSVHDLPMLPFYIYYSMFGFQRIGDLIWAAADQRARGFLIGATSGKTTLGGEGLQH 638 (889)
T ss_pred CCcEEEechhhHHHHHHHHHHHHhhhhcCCCceEEEEehHHhHhhhHHHHHHHHhhcCCCcEEEEECCCccCCCCCcccc
Confidence 4445557889999987 888877663 44 3444555553 2345566666667778888887766653233322222
Q ss_pred eccCCCChHHHHHHhhhcee-EEEEecCcchhHHHHHHHHHHhhhc--CCcEEEEecCCCCCCCCCCCCCCCCCccCCCC
Q 007917 138 HTIGLPDFTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKE--SKPVYISISCNLPGIPHPTFARDPVPFFLAPK 214 (585)
Q Consensus 138 ~~~~~~~~~d~~~~~~~~~k-~~~~v~~~~~~~~~l~~A~~~a~~~--~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~ 214 (585)
|......+++.+.. -.+...++.++..+++.+++.+... .||+||.+...-.. .|..... .+ ...
T Consensus 639 ------q~~eDial~r~iPn~tv~~PaDa~E~a~iv~~~~~rm~~~~~~gp~YlRl~r~~~~--~p~~~~~--~~--~~~ 706 (889)
T TIGR03186 639 ------QDGTSHLAASTVPNCRAWDPAFAYEVAVIVDEGMREMLERQRDEFYYLTVTNENYA--QPSLPED--RL--DAV 706 (889)
T ss_pred ------cchHhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCC--CCCcCCC--cc--cch
Confidence 33344677887643 3456678889999999999966654 59999999865311 1110000 00 000
Q ss_pred CCChhhHHHHHHHHHHHHHh---cCCCEEEeCcccchhchHHHHHHHHHHhCC
Q 007917 215 VSNQLGLEAAVEATADFLNK---AVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (585)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~---a~rpvIi~G~g~~~~~a~~~l~~lae~l~~ 264 (585)
...+-+....|.. ...-+.|+|.|..-..+.++...|++.+|+
T Consensus 707 -------~~gi~kg~y~l~~~~~~g~dV~LlasG~~v~eAL~AAe~L~~~~GI 752 (889)
T TIGR03186 707 -------RRGILKGMYPLDPAALAAARVQLLGSGAILGEVQAAARLLRDDWGI 752 (889)
T ss_pred -------hcchhheeeEeeccCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCC
Confidence 0000011122221 123477778887777778888888876654
No 317
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=74.03 E-value=8.4 Score=48.59 Aligned_cols=113 Identities=12% Similarity=0.003 Sum_probs=72.5
Q ss_pred HHhhhhhhhhcCccEEEEeCCcchHHHHHHHHHhhh--cCCcEEEEeCCCCCccCCCc-------c--ceeeccCCCChH
Q 007917 78 GYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYS--ENLPVICIVGGPNSNDYGTN-------R--ILHHTIGLPDFT 146 (585)
Q Consensus 78 ~~~A~gyar~tg~~v~~~t~GpG~~n~~~gl~~A~~--~~~Pll~I~g~~~~~~~~~~-------~--~~~~~~~~~~~~ 146 (585)
.-+|.|.+.+.++-|+.++..-|+.--++.|..|.. .++|+++|.-........+. . .+...+......
T Consensus 767 lpaAIGaala~~r~Vv~i~GDGsF~m~~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~~~~~~~~~~~~~~~~~~~ 846 (1655)
T PLN02980 767 LSTAIGFAVGCNKRVLCVVGDISFLHDTNGLSILSQRIARKPMTILVINNHGGAIFSLLPIAKRTEPRVLNQYFYTSHDI 846 (1655)
T ss_pred HHHHHHHhhcCCCCEEEEEehHHHHhhhhHHHHhhcccCCCCEEEEEEeCCCcHhhhcCccCCCCcchhHHHHhcCCCCC
Confidence 335667666555555555666677778899999877 48999888876554211110 0 000011111123
Q ss_pred HHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCCC
Q 007917 147 QELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (585)
Q Consensus 147 d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (585)
|...+.+.+-..+.++++++++.+.+++|+ ..+||..|++..|-
T Consensus 847 df~~lA~a~G~~~~rV~~~~eL~~aL~~a~----~~~~p~lIEV~t~~ 890 (1655)
T PLN02980 847 SIENLCLAHGVRHLHVGTKSELEDALFTSQ----VEQMDCVVEVESSI 890 (1655)
T ss_pred CHHHHHHHcCCceeecCCHHHHHHHHHHhh----ccCCCEEEEEecCh
Confidence 567788888788889999888777776655 34799999999875
No 318
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=73.85 E-value=15 Score=38.40 Aligned_cols=112 Identities=13% Similarity=0.070 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHhcC--CCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHH
Q 007917 220 GLEAAVEATADFLNKAV--KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCG 297 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~a~--rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~ 297 (585)
..+++++.+++.|.+.+ .-.+++|.... .+..-.+++|++.+|...+.+-......+-.+.. .|.+ . . + ...
T Consensus 70 sW~eAl~~ia~~l~~~~~~~i~~i~g~~~t-~E~~~~lkkl~~~lgs~n~d~~~~~~~~~~~~~~-~~~~-~-~-~-~sl 143 (366)
T cd02774 70 GWKTAFKFLNKFILLKKFSKLNFIIGSKID-LETLFYYKKLLNKLGSLNTNSNNFLENNNYFNLD-LENY-L-F-N-NSL 143 (366)
T ss_pred CHHHHHHHHHHHHhhcCcccEEEEECCCCC-HHHHHHHHHHHHHhCCCceecccccccccccccc-ccCC-c-c-C-CCH
Confidence 35677888888886543 44566666544 4677788999999998877643221100001111 1221 1 1 1 123
Q ss_pred HHhhhCCEEEEeCCccCCcccccc-cc---c-CCCcceEEEcCCc
Q 007917 298 EIVESADAYVFVGPIFNDYSSVGY-SL---L-IKKEKAIIVQPHR 337 (585)
Q Consensus 298 ~~l~~aD~vl~lG~~~~~~~~~~~-~~---~-~~~~~~i~id~~~ 337 (585)
+-++++|+||++|+.+.+....-+ .. . ..+.+++.|++..
T Consensus 144 ~die~ad~illiG~n~~~e~Pvl~~rlrka~~~~~~ki~vi~~~~ 188 (366)
T cd02774 144 KNLDKSDLCLLIGSNLRVESPILNIRLRNRYNKGNKKIFVIGNKF 188 (366)
T ss_pred HHHhhCCEEEEEcCCcchhhHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 346899999999988755443211 11 1 2345788888766
No 319
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=73.64 E-value=4.9 Score=38.78 Aligned_cols=63 Identities=17% Similarity=0.161 Sum_probs=39.1
Q ss_pred HHHHhhhCCEEEEeCCccCCcccccccc--cCCCcceEEEcCCceeecCC-CccccccHHHHHHHH
Q 007917 296 CGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGNG-PSLGWVFMADFLSAL 358 (585)
Q Consensus 296 ~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~~~~~~~~~-~~~~~~~~~~~l~~L 358 (585)
+.+.+.++|++|++|+++.-.....+-. ..++.++|.|+.++..+... ...-..++..+|..|
T Consensus 158 ~~~~~~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~~~~~~~~~~~~i~g~~~~~l~~l 223 (224)
T cd01412 158 AVEALAKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPEPTPLSPIADFAFRGKAGEVLPAL 223 (224)
T ss_pred HHHHHHcCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECCCCCCCCCcCCEEEECCHHHHHHHh
Confidence 4566789999999998875443222211 13456889999887655311 122234677777765
No 320
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=73.16 E-value=6 Score=39.80 Aligned_cols=69 Identities=19% Similarity=0.132 Sum_probs=44.1
Q ss_pred HHHHHhhhCCEEEEeCCccCCccccccc-c-cCCCcceEEEcCCceeecCC-CccccccHHHHHHHHHHHhc
Q 007917 295 FCGEIVESADAYVFVGPIFNDYSSVGYS-L-LIKKEKAIIVQPHRVTVGNG-PSLGWVFMADFLSALAKKLR 363 (585)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~-~-~~~~~~~i~id~~~~~~~~~-~~~~~~~~~~~l~~L~~~l~ 363 (585)
.+.+.+.++|++|+||+++.-.....+- . ...+.++|.|+.++...... ...-..++.++|+.|.+.+.
T Consensus 207 ~a~~~~~~~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~~~~~~~i~g~~~evL~~l~~~l~ 278 (285)
T PRK05333 207 AARAALDAADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRADPLLTLKVEASCAQALAALVARLG 278 (285)
T ss_pred HHHHHHhcCCEEEEECcCceecchhhhHHHHHHCCCeEEEECCCCCCCCcceeEEEeCCHHHHHHHHHHHhC
Confidence 3556778999999999998654332221 1 12345788899887654311 11223478899999887764
No 321
>PRK13936 phosphoheptose isomerase; Provisional
Probab=72.98 E-value=29 Score=32.68 Aligned_cols=100 Identities=15% Similarity=0.167 Sum_probs=60.0
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHH--HHHhhhc-----CCCCeEEecCchhhH---HHhhhhh--------hhhcC
Q 007917 28 TLGRHLARRLVEIGAKDVFSVPGDFNLT--LLDHLIA-----EPELNLVGCCNELNA---GYAADGY--------ARSRG 89 (585)
Q Consensus 28 ~~a~~i~~~L~~~Gv~~vFg~PG~~~~~--l~~al~~-----~~~i~~i~~~~E~~A---~~~A~gy--------ar~tg 89 (585)
..++.+++.|.+.|.=++||.-++.... +...+.. .++++.+........ .+--.++ +....
T Consensus 31 ~a~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~r~~~~r~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~~~~ 110 (197)
T PRK13936 31 QAVELMVQALLNEGKILACGNGGSAADAQHFSAELLNRFERERPSLPAIALTTDTSTLTAIANDYSYNEVFSKQVRALGQ 110 (197)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHccCccCCCCccceeEecCCcHHHHHHHhhcCCHHHHHHHHHHHhCC
Confidence 5678889999999999999997765433 3333431 245666554222222 1000111 11122
Q ss_pred c-cEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCCCC
Q 007917 90 V-GACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNS 127 (585)
Q Consensus 90 ~-~v~~~t~GpG-~~n~~~gl~~A~~~~~Pll~I~g~~~~ 127 (585)
. =+++.-|..| ..+.+..+..|+..++|+|.||+....
T Consensus 111 ~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s 150 (197)
T PRK13936 111 PGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGG 150 (197)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 2 3444444444 455888899999999999999997543
No 322
>cd02772 MopB_NDH-1_NuoG2 MopB_NDH-1_NuoG2: The second domain of the NuoG subunit of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1), found in beta- and gammaproteobacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evidence remains of a molybdopterin binding site, this protein domain belongs to t
Probab=72.79 E-value=8.3 Score=40.99 Aligned_cols=112 Identities=13% Similarity=0.006 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHHhcC------CCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeee-cCCCC
Q 007917 220 GLEAAVEATADFLNKAV------KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTY-WGAVS 292 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~a~------rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~-~g~~~ 292 (585)
..+++++.+++.|.+.+ ...++.|... ..+....+.+|++.+|.|.+......... ....+.. .+..+
T Consensus 70 sWdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~-~~e~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~ 144 (414)
T cd02772 70 DWETALEYVAEGLSAIIKKHGADQIGALASPHS-TLEELYLLQKLARGLGSDNIDHRLRQSDF----RDDAKASGAPWLG 144 (414)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcceEEEEecCCC-CcHHHHHHHHHHHHhCCCCccCccccCcc----chhhhhccCCCCC
Confidence 35678888888887643 2233334332 22445678899999998876532111100 0001100 01112
Q ss_pred CHHHHHHhhhCCEEEEeCCccCCcccccccc----cCCCcceEEEcCCce
Q 007917 293 SSFCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRV 338 (585)
Q Consensus 293 ~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~~~~ 338 (585)
. ...-+.++|+||++|+.+.+.....+.. ...+.++|.||+-..
T Consensus 145 ~--~~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~g~k~i~idp~~~ 192 (414)
T cd02772 145 M--PIAEISELDRVLVIGSNLRKEHPLLAQRLRQAVKKGAKLSAINPADD 192 (414)
T ss_pred C--cHHHHHhCCEEEEECCCccccchHHHHHHHHHHHcCCEEEEEeCccc
Confidence 1 2334688999999999864433211111 123568999998543
No 323
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=72.75 E-value=33 Score=35.68 Aligned_cols=146 Identities=14% Similarity=0.034 Sum_probs=77.2
Q ss_pred CCHHHHHH-HHHhhCC-CCCEEE--ecCCcccc--cc-ccc-cccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEE
Q 007917 391 LRVNVLFK-HIQDMLS-GDTAVI--AETGDSWF--NC-QKL-RLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIA 462 (585)
Q Consensus 391 ~~~~~~~~-~L~~~l~-~~~ii~--~d~G~~~~--~~-~~~-~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~ 462 (585)
++...++. .|.+.+. ++.+++ .|+|.+.. +. ..+ ..-.+.+|+..+-. =...++.|.|.+++ ..+|++.
T Consensus 27 ~~~~~a~~~aL~e~~~~d~~iv~i~~D~~~~~g~~~~~~~l~~~~~P~R~~d~GIA--Eq~~vg~AaGlA~~-G~~P~v~ 103 (356)
T PLN02683 27 MTVRDALNSALDEEMSADPKVFIMGEEVGEYQGAYKITKGLLQKYGPDRVLDTPIT--EAGFTGIGVGAAYA-GLKPVVE 103 (356)
T ss_pred cHHHHHHHHHHHHHHhhCcCEEEEccccccccCccchhhhHHHHhCCCcEEECchh--HHHHHHHHHHHHHC-CCEEEEE
Confidence 55555444 5666654 344555 34444321 11 111 11112335543211 12467788888875 3456655
Q ss_pred EE-cCchhH---hH-HHHHHhC--------CCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHh-cCCCCCccEE
Q 007917 463 CI-GDGSFQ---EI-STMIRCG--------QRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAI-HNGEGKCWTA 528 (585)
Q Consensus 463 v~-GDGsf~---eL-~ta~~~~--------lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~-G~~~~~~~~~ 528 (585)
+. .|-... .| ..+...+ +|++++..+ +.+.- .+.. +...+..+.+++ |. ..+
T Consensus 104 ~~~~~f~~ra~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~~g-----~G~t---H~~~~~a~lr~iPnl-----~V~ 169 (356)
T PLN02683 104 FMTFNFSMQAIDHIINSAAKTNYMSAGQISVPIVFRGPN-GAAAG-----VGAQ---HSQCFAAWYSSVPGL-----KVL 169 (356)
T ss_pred EehhhHHHHHHHHHHHHHHHhccccCCCccCCEEEEEeC-CCCCC-----CCCc---cccCHHHHHhcCCCC-----EEE
Confidence 53 333322 33 2334344 898887544 43210 1111 222234555555 44 777
Q ss_pred EecCHHHHHHHHHHhhhcCCCCeEEEE
Q 007917 529 KVRSEDELTEAMKTATGEQKDSLCFIE 555 (585)
Q Consensus 529 ~v~~~~eL~~al~~a~~~~~~gp~vIe 555 (585)
...|..|++.+++.++. .++|++|-
T Consensus 170 ~Pad~~e~~~~l~~a~~--~~gPv~ir 194 (356)
T PLN02683 170 APYSSEDARGLLKAAIR--DPDPVVFL 194 (356)
T ss_pred EeCCHHHHHHHHHHHHh--CCCcEEEE
Confidence 88899999999999986 67899984
No 324
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=72.32 E-value=30 Score=32.49 Aligned_cols=102 Identities=13% Similarity=0.078 Sum_probs=63.0
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHh--hh-----cCCCCeEEecCchhhHH-----------Hhhhhhhhh
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDH--LI-----AEPELNLVGCCNELNAG-----------YAADGYARS 87 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~a--l~-----~~~~i~~i~~~~E~~A~-----------~~A~gyar~ 87 (585)
....++.|.+.|.+.|-=++||+-++......-+ +. ...++..+.. .+.+.. .++.-.+..
T Consensus 30 i~~a~~~i~~al~~~~rI~i~G~G~S~~~A~~~a~~l~~~~~~~r~g~~~~~~-~d~~~~~~~~~d~~~~~~~~~~~~~~ 108 (192)
T PRK00414 30 IQRAAVLIADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAI-SDVSHLSCVSNDFGYDYVFSRYVEAV 108 (192)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhcccccCCCCCceEEec-CcHHHHhhhhccCCHHHHHHHHHHHh
Confidence 3466788888888889999999977765433332 21 1235665544 332211 111111111
Q ss_pred cCc-cEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCCCCc
Q 007917 88 RGV-GACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNSN 128 (585)
Q Consensus 88 tg~-~v~~~t~GpG-~~n~~~gl~~A~~~~~Pll~I~g~~~~~ 128 (585)
... -++++.|..| ..+.+.++..|...++|+|.||+.....
T Consensus 109 ~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~ 151 (192)
T PRK00414 109 GREGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGK 151 (192)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCh
Confidence 223 4666666666 5568899999999999999999975443
No 325
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=72.30 E-value=3 Score=43.56 Aligned_cols=117 Identities=16% Similarity=0.111 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHHhcC-----CCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCc-eeeecCCCCC
Q 007917 220 GLEAAVEATADFLNKAV-----KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHF-IGTYWGAVSS 293 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~a~-----rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~-~G~~~g~~~~ 293 (585)
..+++++.+++.|++.+ ..+.+.++........-.+.+|...++.+.+.....-...+....+. .|. +....
T Consensus 72 sWdeAl~~ia~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 149 (374)
T cd00368 72 SWDEALDEIAEKLKEIREKYGPDAIAFYGGGGASNEEAYLLQKLLRALGSNNVDSHARLCHASAVAALKAFGG--GAPTN 149 (374)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCceEEEEecCCCCcHHHHHHHHHHHhcCCCccCCCCcccHHHHHHHHHHhCC--CCCCC
Confidence 35778888888887653 45554443333223444556678888877665432211111100000 011 11111
Q ss_pred HHHHHHhhhCCEEEEeCCccCCccccccc----ccCCCcceEEEcCCceee
Q 007917 294 SFCGEIVESADAYVFVGPIFNDYSSVGYS----LLIKKEKAIIVQPHRVTV 340 (585)
Q Consensus 294 ~~~~~~l~~aD~vl~lG~~~~~~~~~~~~----~~~~~~~~i~id~~~~~~ 340 (585)
...-++++|+||++|+.+......... ...++.++|.||+.....
T Consensus 150 --~~~d~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~g~kvv~idp~~s~t 198 (374)
T cd00368 150 --TLADIENADLILLWGSNPAETHPVLAARLRRAKKRGAKLIVIDPRRTET 198 (374)
T ss_pred --CHHHHhhCCEEEEEcCChHHhChHHHHHHHHHHHCCCeEEEEcCCCCcc
Confidence 123356999999999876433321111 112456899999876543
No 326
>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit. This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.
Probab=71.64 E-value=11 Score=44.72 Aligned_cols=117 Identities=13% Similarity=-0.041 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHHh------cCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCC
Q 007917 220 GLEAAVEATADFLNK------AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSS 293 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~------a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~ 293 (585)
..+++++.+++.|.+ .+...++.|.+...........+|+..+|.+........+.....++..+|.. ..+
T Consensus 140 SWdEAld~IA~kl~~i~~~~Gp~si~~~~~~~~~~~~~~~~~~r~~~~lG~~~~~~~~~~~~~~~~~~~~~G~~--~~~- 216 (912)
T TIGR03479 140 SWDEALTEIADKIIDTFEAQGPDGISLDTPHPHMAPISFAAGSRFANLIGGVSPDIFDDYGDLYTGAFHTFGKA--HDS- 216 (912)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCchhhHHHHHHHHHHHHcCCCccccccccCCCCCcccceeccC--ccC-
Confidence 456788888887754 23333333544432222344578888888764322111111222333333431 111
Q ss_pred HHHHHHhhhCCEEEEeCCccCCcccccccc----cCCCcceEEEcCCceee
Q 007917 294 SFCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVTV 340 (585)
Q Consensus 294 ~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~~~~~~ 340 (585)
....-+.+||+||++|+.........+.. ..++.|+|.||++....
T Consensus 217 -~~~~D~~na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdPr~t~t 266 (912)
T TIGR03479 217 -ATSDDWFNADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAPDYNPS 266 (912)
T ss_pred -CchhhhhcCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECCCCChh
Confidence 12234579999999998865443322221 12457999999987543
No 327
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=71.53 E-value=21 Score=39.41 Aligned_cols=110 Identities=8% Similarity=-0.029 Sum_probs=63.6
Q ss_pred hhhhhhhhc-CccEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCc-cce-eeccCCCChHHHHHHhhhce
Q 007917 80 AADGYARSR-GVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTN-RIL-HHTIGLPDFTQELRCFQAIT 156 (585)
Q Consensus 80 ~A~gyar~t-g~~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~-~~~-~~~~~~~~~~d~~~~~~~~~ 156 (585)
+|.|.+.+. ++-|+.++..-|+.=.+.-|..|...++|+++|.-+......-+. ... +.... ....|...+.+.+-
T Consensus 412 aaiGa~la~p~~~vv~i~GDG~f~m~~~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~-~~~~df~~la~a~G 490 (539)
T TIGR03393 412 AAFGAQTACPNRRVILLIGDGSAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYND-IALWNWTHLPQALS 490 (539)
T ss_pred HHHHHHhcCCCCCeEEEEcCcHHHhHHHHHHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcCc-CCCCCHHHHHHHcC
Confidence 456655544 343333333333444568888999999999999887654321100 000 00000 01124456666654
Q ss_pred e----EEEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCCC
Q 007917 157 C----SQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (585)
Q Consensus 157 k----~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (585)
. +..++++.+++.+.+++|+ ..+||+.|++..|-
T Consensus 491 ~~~~~~~~~v~~~~el~~al~~a~----~~~~p~liev~i~~ 528 (539)
T TIGR03393 491 LDPQSECWRVSEAEQLADVLEKVA----AHERLSLIEVVLPK 528 (539)
T ss_pred CCCccceEEeccHHHHHHHHHHHh----ccCCeEEEEEEcCc
Confidence 3 3788888877777777665 44799999999764
No 328
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=71.30 E-value=21 Score=33.24 Aligned_cols=66 Identities=12% Similarity=0.049 Sum_probs=47.9
Q ss_pred CCcEEEEEcCchhH------hHH-HHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEE
Q 007917 457 DKRVIACIGDGSFQ------EIS-TMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAK 529 (585)
Q Consensus 457 ~~~vv~v~GDGsf~------eL~-ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~ 529 (585)
.++++.+++||+-. ++. .+.+.++.+.+|=+.++. .=+.++|++-|+ .++.
T Consensus 107 ~~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~~-----------------~~L~~ia~~tgG-----~~~~ 164 (183)
T cd01453 107 SREVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSAEM-----------------HICKEICKATNG-----TYKV 164 (183)
T ss_pred ceEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEechHH-----------------HHHHHHHHHhCC-----eeEe
Confidence 35688888887744 222 234567777777664221 027889999999 8999
Q ss_pred ecCHHHHHHHHHHhh
Q 007917 530 VRSEDELTEAMKTAT 544 (585)
Q Consensus 530 v~~~~eL~~al~~a~ 544 (585)
+.+.++|.+.+.++.
T Consensus 165 ~~~~~~l~~~~~~~~ 179 (183)
T cd01453 165 ILDETHLKELLLEHV 179 (183)
T ss_pred eCCHHHHHHHHHhcC
Confidence 999999999998865
No 329
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=71.12 E-value=46 Score=33.63 Aligned_cols=147 Identities=16% Similarity=0.102 Sum_probs=76.7
Q ss_pred cCCCEEEecCCCChHHHHHhhh-cC-CCCeEEecCchhhHHHhhhhhhhhc---Cc-cEEEEeCCcc--hHHHHHHHHHh
Q 007917 40 IGAKDVFSVPGDFNLTLLDHLI-AE-PELNLVGCCNELNAGYAADGYARSR---GV-GACVVTFTVG--GLSVLNAIAGA 111 (585)
Q Consensus 40 ~Gv~~vFg~PG~~~~~l~~al~-~~-~~i~~i~~~~E~~A~~~A~gyar~t---g~-~v~~~t~GpG--~~n~~~gl~~A 111 (585)
.|=+.|+.. +.....++-... .. -.+.++...+|.++++ |.|.+++. ++ .-+++..|=| ....++++.+|
T Consensus 37 ~g~~~vi~~-~iGC~s~~~~~~p~~~~~~~~~~~~fg~~~a~-a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~~~L~~a 114 (299)
T PRK11865 37 LGKNTVIVV-ATGCLEVITTPYPETAWNVPWIHVAFENAAAV-ASGIERAVKALGKKVNVVAIGGDGGTADIGFQSLSGA 114 (299)
T ss_pred cCCCEEEEe-CCCcccccCccCcCCccccccchhhhcchHHH-HHHHHHHHHHhcCCCeEEEEeCCchHhhccHHHHHHH
Confidence 355555554 333444443221 11 1467788888877665 44555442 33 3344444444 33468999999
Q ss_pred hhcCCcEEEEeCCCCCccCCCccceee----------------ccCCC-ChHHHHHHhhhc-eeEEEEecCcchhHHHHH
Q 007917 112 YSENLPVICIVGGPNSNDYGTNRILHH----------------TIGLP-DFTQELRCFQAI-TCSQAVVNNLGDAHELID 173 (585)
Q Consensus 112 ~~~~~Pll~I~g~~~~~~~~~~~~~~~----------------~~~~~-~~~d~~~~~~~~-~k~~~~v~~~~~~~~~l~ 173 (585)
...+.++++|.=|...... ++.+.+- ..|.. .-.|...++..+ +.|..++. +. -+..+.
T Consensus 115 ~~r~~ni~~ivlDNe~Y~n-TGgQ~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~-~~-~~~~l~ 191 (299)
T PRK11865 115 MERGHNILYLMYDNEAYMN-TGIQRSGSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATAS-IG-YPEDFM 191 (299)
T ss_pred HHcCCCeEEEEECCccccC-CCCCCCCCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEe-CC-CHHHHH
Confidence 9999999999877554321 1100000 00000 123444555332 34544433 22 233345
Q ss_pred HHHHHhhhcCCcEEEEec
Q 007917 174 TAISTALKESKPVYISIS 191 (585)
Q Consensus 174 ~A~~~a~~~~gPV~i~iP 191 (585)
++++.|...+||.+|.+-
T Consensus 192 ~~i~~A~~~~Gps~I~v~ 209 (299)
T PRK11865 192 EKVKKAKEVEGPAYIQVL 209 (299)
T ss_pred HHHHHHHhCCCCEEEEEE
Confidence 566666666899999875
No 330
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=70.55 E-value=34 Score=30.75 Aligned_cols=97 Identities=21% Similarity=0.173 Sum_probs=58.9
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHh--hh-----cCCCCeEEecC---chhhHHHhhhhh----hh---h-cCc-c
Q 007917 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDH--LI-----AEPELNLVGCC---NELNAGYAADGY----AR---S-RGV-G 91 (585)
Q Consensus 31 ~~i~~~L~~~Gv~~vFg~PG~~~~~l~~a--l~-----~~~~i~~i~~~---~E~~A~~~A~gy----ar---~-tg~-~ 91 (585)
+.+++.|.+.+.=++||+-++......-+ +. ...++..+... |+..+..--.+| .+ . ..+ -
T Consensus 2 ~~~~~~l~~a~rI~~~G~G~S~~~A~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D 81 (154)
T TIGR00441 2 VLLADSFKAGGKVLICGNGGSACDAQHFAAELTGRYRENRPGLPAIALSADVSHLTCVSNDYGYEDVFSRQVEALGQKGD 81 (154)
T ss_pred hHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHhhcccccCCCCceEEecCCcHHHHHHhhccCCHHHHHHHHHHHhCCCCC
Confidence 56889999999999999977654332221 10 12345444422 222222111122 22 1 133 6
Q ss_pred EEEEeCCcchHH-HHHHHHHhhhcCCcEEEEeCCCCC
Q 007917 92 ACVVTFTVGGLS-VLNAIAGAYSENLPVICIVGGPNS 127 (585)
Q Consensus 92 v~~~t~GpG~~n-~~~gl~~A~~~~~Pll~I~g~~~~ 127 (585)
++++.|.+|-+. .+..+..|...++|+|.||+....
T Consensus 82 ~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s 118 (154)
T TIGR00441 82 VLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGG 118 (154)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 777778888555 778888899999999999996443
No 331
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=69.71 E-value=7.4 Score=44.30 Aligned_cols=115 Identities=18% Similarity=0.128 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHh------cCCCEEEeCcccchhchHHHHHHHHHH-hCCCeEEccCCccCCCC--CCCCceeeecCC
Q 007917 220 GLEAAVEATADFLNK------AVKPVLVGGPNIRVAKAQKAFIELADA-TGYPIAIMPSGKGLVPE--HHPHFIGTYWGA 290 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~------a~rpvIi~G~g~~~~~a~~~l~~lae~-l~~Pv~~t~~gkg~~~~--~hp~~~G~~~g~ 290 (585)
..+++++.+++.|++ .++..++.|.+... +....+.+|++. +|.+-+.+...-...+. .+...+|.. .
T Consensus 69 sWdeAl~~ia~~l~~~~~~~g~~~v~~~~~~~~~~-e~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~G~~--~ 145 (671)
T TIGR01591 69 SWDEAISYIAEKLKEIKEKYGPDSIGFIGSSRGTN-EENYLLQKLARAVIGTNNVDNCARVCHGPSVAGLKQTVGIG--A 145 (671)
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCccc-HHHHHHHHHHHHhcCCccccCCCCceehhhhHHHHHhhCCC--C
Confidence 356788888888873 34556666665442 345577889986 88876543221110000 111112221 1
Q ss_pred CCCHHHHHHhhhCCEEEEeCCccCCccccccc----ccCCCcceEEEcCCcee
Q 007917 291 VSSSFCGEIVESADAYVFVGPIFNDYSSVGYS----LLIKKEKAIIVQPHRVT 339 (585)
Q Consensus 291 ~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~----~~~~~~~~i~id~~~~~ 339 (585)
.+. ...-+.+||+||++|+.+.......+. ...++.++|.||+....
T Consensus 146 ~~~--~~~di~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~~s~ 196 (671)
T TIGR01591 146 MSN--TISEIENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPRKTE 196 (671)
T ss_pred CCC--CHHHHHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCCCCh
Confidence 111 123478899999999876443321111 11245689999986643
No 332
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=68.67 E-value=8.1 Score=43.01 Aligned_cols=114 Identities=18% Similarity=0.094 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHHhc--CCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCcc--CCCCCCCCceeeecCCCCCHH
Q 007917 220 GLEAAVEATADFLNKA--VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKG--LVPEHHPHFIGTYWGAVSSSF 295 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~a--~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg--~~~~~hp~~~G~~~g~~~~~~ 295 (585)
..+++++.+++.|++. +..+++.++... .++.-...+|+..+|.+-+.....-. .-....+..+|. +. +. .
T Consensus 82 SWDEAl~~IA~kL~~~~~~~~~~y~sg~~s-nE~~~l~q~f~r~lGt~n~~~~s~~C~~~~~~al~~~~G~--~~-~t-~ 156 (574)
T cd02767 82 SWDEAFAEIAARLRALDPDRAAFYTSGRAS-NEAAYLYQLFARAYGTNNLPDCSNMCHEPSSVGLKKSIGV--GK-GT-V 156 (574)
T ss_pred cHHHHHHHHHHHHhhhCCCcEEEEecCCCc-cHHHHHHHHHHHHhCCCCcCCCCCCcchHHHhHHHHhcCC--CC-CC-C
Confidence 4678899999988875 344444433332 23444677899989976543211100 000001112232 11 11 1
Q ss_pred HHHHhhhCCEEEEeCCccCCcccccccc----cCCCcceEEEcCCce
Q 007917 296 CGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRV 338 (585)
Q Consensus 296 ~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~~~~ 338 (585)
..+-+.++|+||++|+.........+.. ..++.|+|.||+...
T Consensus 157 ~~~Di~~ad~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~ 203 (574)
T cd02767 157 SLEDFEHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLRE 203 (574)
T ss_pred CHHHHhcCCEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 1234578999999998764433221211 124578999998653
No 333
>PRK13937 phosphoheptose isomerase; Provisional
Probab=68.07 E-value=40 Score=31.42 Aligned_cols=102 Identities=17% Similarity=0.173 Sum_probs=61.8
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHH--HHHhhh-----cCCCCeEEecC-chhhHHHhh--hhhh---------hh
Q 007917 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLT--LLDHLI-----AEPELNLVGCC-NELNAGYAA--DGYA---------RS 87 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~--l~~al~-----~~~~i~~i~~~-~E~~A~~~A--~gya---------r~ 87 (585)
-..++.+++.|++.+-=++||+=++.... +...+. ...++..+... +.......+ .||. ..
T Consensus 25 ~~aa~~i~~~l~~a~rI~i~G~G~S~~~A~~~a~~~~~~~~~~r~g~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~ 104 (188)
T PRK13937 25 AKVAEALIEALANGGKILLCGNGGSAADAQHIAAELVGRFKKERPALPAIALTTDTSALTAIGNDYGFERVFSRQVEALG 104 (188)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhhccccCCCCCcceEeccCcHHHHHHHhccCCHHHHHHHHHHhhC
Confidence 45678999999999999999995554332 211121 12356666532 222211111 1111 22
Q ss_pred cCccEEEEeCCcch-HHHHHHHHHhhhcCCcEEEEeCCCCCc
Q 007917 88 RGVGACVVTFTVGG-LSVLNAIAGAYSENLPVICIVGGPNSN 128 (585)
Q Consensus 88 tg~~v~~~t~GpG~-~n~~~gl~~A~~~~~Pll~I~g~~~~~ 128 (585)
+..-++++.|..|- .+.+.++..|...++|+|.||+...+.
T Consensus 105 ~~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~ 146 (188)
T PRK13937 105 RPGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGK 146 (188)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCCh
Confidence 22356666666664 457888888999999999999975443
No 334
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=67.66 E-value=41 Score=33.06 Aligned_cols=107 Identities=20% Similarity=0.124 Sum_probs=57.4
Q ss_pred hhhhhhhhc---Cc-cEEEEeCCcchHH---HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHh
Q 007917 80 AADGYARSR---GV-GACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCF 152 (585)
Q Consensus 80 ~A~gyar~t---g~-~v~~~t~GpG~~n---~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 152 (585)
+|.|.|.+. +. .-+++..|=|..+ ..-++..|...++|.|++.-+.......... +... ...+...++
T Consensus 113 ~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~--~~~~---~~~~~~~~~ 187 (255)
T cd02012 113 VAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPT--DDIL---FTEDLAKKF 187 (255)
T ss_pred HHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCcH--hhcc---CchhHHHHH
Confidence 455555442 22 3444445666555 5778888989999844444444332221110 0001 123456777
Q ss_pred hhceeEEEEec--CcchhHHHHHHHHHHhhhc-CCcEEEEecCCCC
Q 007917 153 QAITCSQAVVN--NLGDAHELIDTAISTALKE-SKPVYISISCNLP 195 (585)
Q Consensus 153 ~~~~k~~~~v~--~~~~~~~~l~~A~~~a~~~-~gPV~i~iP~dv~ 195 (585)
+.+--...++. +.+++ .+|++.+... .+|+.|.+-..--
T Consensus 188 ~a~G~~~~~v~G~d~~~l----~~al~~a~~~~~~P~~I~~~t~kg 229 (255)
T cd02012 188 EAFGWNVIEVDGHDVEEI----LAALEEAKKSKGKPTLIIAKTIKG 229 (255)
T ss_pred HHcCCeEEEECCCCHHHH----HHHHHHHHHcCCCCEEEEEEeecc
Confidence 77643445565 55444 4555555443 6899999876653
No 335
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=66.91 E-value=36 Score=36.80 Aligned_cols=94 Identities=17% Similarity=0.116 Sum_probs=59.6
Q ss_pred hHHHHHHHhhhcCCCcEEEEE-cCchhH---hH-HHHH--------HhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCC
Q 007917 444 SVGATLGYAQAAKDKRVIACI-GDGSFQ---EI-STMI--------RCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWD 510 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v~-GDGsf~---eL-~ta~--------~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d 510 (585)
.++.|.|++++ .-||++.+. .+-... .| ..+. +.++|++++- -|+++.. .+. -+..+
T Consensus 201 ~vg~AaGlA~~-G~rPiv~~~~~~f~~ra~dQI~n~~ak~~~~sgg~~~~pVv~~g-~~G~~~~-----~G~---hhs~~ 270 (464)
T PRK11892 201 FAGIGVGAAFA-GLKPIVEFMTFNFAMQAIDQIINSAAKTLYMSGGQMGCPIVFRG-PNGAAAR-----VAA---QHSQD 270 (464)
T ss_pred HHHHHHHHHhC-CCEEEEEEehHHHHHHHHHHHHHHHhHHhhhcCCccCCCEEEEe-cCCCCCC-----CCC---ccccC
Confidence 46777888775 346666554 232222 22 2233 6789988874 3444321 111 13456
Q ss_pred HHHHHHHh-cCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEE
Q 007917 511 YTGLVNAI-HNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFI 554 (585)
Q Consensus 511 ~~~la~a~-G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vI 554 (585)
+..+.+.+ |. +.+...++.|++..|+.++. .++|++|
T Consensus 271 d~a~~~~iPgl-----~V~~P~d~~d~~~ll~~ai~--~~~Pv~i 308 (464)
T PRK11892 271 YAAWYSHIPGL-----KVVAPYSAADAKGLLKAAIR--DPNPVIF 308 (464)
T ss_pred HHHHHhhCCCC-----EEEEeCCHHHHHHHHHHHhh--CCCcEEE
Confidence 67777766 44 77778899999999999996 6789987
No 336
>PRK05261 putative phosphoketolase; Provisional
Probab=66.38 E-value=1.1e+02 Score=35.41 Aligned_cols=116 Identities=10% Similarity=0.056 Sum_probs=71.9
Q ss_pred CCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHHHHHHHhh---------------hcCCcEEEEeCCCCCc
Q 007917 65 ELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAY---------------SENLPVICIVGGPNSN 128 (585)
Q Consensus 65 ~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~gl~~A~---------------~~~~Pll~I~g~~~~~ 128 (585)
+=|+|....|...+.++.||+. +|+ +.+. |.- .+...+..+.++. ..++. +++|.+.=
T Consensus 449 ~Grvie~LsEh~~~g~~~Gy~L-tG~~~~~~-sYe-aF~~ivd~m~~q~~kw~r~~~~~~wr~~~~sLn-~l~Ts~~~-- 522 (785)
T PRK05261 449 DGRVMEVLSEHLCEGWLEGYLL-TGRHGFFS-SYE-AFIHIVDSMFNQHAKWLKVAREIPWRKPIPSLN-YLLTSHVW-- 522 (785)
T ss_pred CCCeeeeecHHHHHHHHHHHHh-cCCCccee-cHH-HHHHHHHHHHHHHHHHHHHHhhcccCCCCccee-EEeeccee--
Confidence 3488889999999999999999 887 5554 444 4444445556555 23333 55555432
Q ss_pred cCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-CCcEEEEecCC
Q 007917 129 DYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SKPVYISISCN 193 (585)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~gPV~i~iP~d 193 (585)
.++.+..-| |.+.+++++...++=.-..++..+..++ ..|++.|... .+|..|.+...
T Consensus 523 ~qghNG~TH---Q~Pg~ie~l~~~r~~~~rV~rPaDaNe~----laa~~~al~s~~~p~~IvlsRQ 581 (785)
T PRK05261 523 RQDHNGFSH---QDPGFIDHVANKKPDVIRVYLPPDANTL----LAVADHCLRSRNYINVIVAGKQ 581 (785)
T ss_pred ecCCCCCCC---CCchHHHHHHhcCCCcceEEeCCCHHHH----HHHHHHHHHhCCCCEEEEEeCC
Confidence 233333333 3445688888777744556666665444 4455555543 58999888753
No 337
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=66.12 E-value=5.6 Score=38.37 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=30.9
Q ss_pred HHHHHhhhCCEEEEeCCccCCccccccccc--CCCcceEEEcCCceee
Q 007917 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTV 340 (585)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~~~~~~ 340 (585)
.+.+.+.+||++|++|+++.-.....+-.. ..+.++|.|++++...
T Consensus 164 ~a~~~~~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~~~~~ 211 (222)
T cd01413 164 EAIEAAKEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNADETPF 211 (222)
T ss_pred HHHHHHhcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcCCCCCC
Confidence 455677899999999999864443332221 2345788899887643
No 338
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=66.10 E-value=5.8 Score=39.27 Aligned_cols=47 Identities=17% Similarity=0.128 Sum_probs=32.2
Q ss_pred HHHHHhhhCCEEEEeCCccCCccccccc--ccCCCcceEEEcCCceeec
Q 007917 295 FCGEIVESADAYVFVGPIFNDYSSVGYS--LLIKKEKAIIVQPHRVTVG 341 (585)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~--~~~~~~~~i~id~~~~~~~ 341 (585)
.+.+.+.+||++|+||+++.-.....+. ....+.++|.|+.++..+.
T Consensus 197 ~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~~t~~d 245 (260)
T cd01409 197 TAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIGPTRAD 245 (260)
T ss_pred HHHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCCCCCCC
Confidence 4567788999999999998654433222 1224567999998876553
No 339
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=65.24 E-value=53 Score=33.69 Aligned_cols=96 Identities=14% Similarity=0.071 Sum_probs=55.6
Q ss_pred chHHHHHHHhhhcCCCcEEEEEc-CchhH---hH-HHHHHhC------CCeEEEEEeCC-ceeeeeeecCCCCCCCCCCC
Q 007917 443 WSVGATLGYAQAAKDKRVIACIG-DGSFQ---EI-STMIRCG------QRSIIFLINNG-GYTIEVEIHDGPYNVIKNWD 510 (585)
Q Consensus 443 ~~lpaAiGaalA~p~~~vv~v~G-DGsf~---eL-~ta~~~~------lpv~ivV~NN~-~~~~~~~~~~~~~~~~~~~d 510 (585)
..++.|.|.+++ .-+|++++.. |-... .| ..+...+ +|+.+++...+ .++. .+.. ++-.
T Consensus 62 ~~vg~AaGlA~~-G~~Piv~~~~~~f~~ra~dQi~~d~a~~~~~~~~~~~v~vv~~~~~g~~~~-----~G~t---H~~~ 132 (327)
T PRK09212 62 GFAGLAVGAAFA-GLRPIVEFMTFNFSMQAIDQIVNSAAKTNYMSGGQLKCPIVFRGPNGAAAR-----VAAQ---HSQC 132 (327)
T ss_pred HHHHHHHHHHHc-CCeeEEEeehhhHHHHHHHHHHHHHHHHhhccCCCcCccEEEEeCCCCCCC-----CCcc---cccC
Confidence 356788888885 4567777554 32222 22 2223332 44444444333 2221 1111 3234
Q ss_pred HHHHHHHh-cCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEE
Q 007917 511 YTGLVNAI-HNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFI 554 (585)
Q Consensus 511 ~~~la~a~-G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vI 554 (585)
|..+.+++ |. ..+...++.|++.+|+.++. .++|++|
T Consensus 133 ~ea~~r~iP~l-----~V~~P~d~~e~~~~l~~a~~--~~~Pv~i 170 (327)
T PRK09212 133 YAAWYSHIPGL-----KVVAPYFAADCKGLLKTAIR--DPNPVIF 170 (327)
T ss_pred HHHHHhcCCCC-----EEEeeCCHHHHHHHHHHHHh--CCCcEEE
Confidence 55666665 33 67777899999999999996 6889998
No 340
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=65.03 E-value=60 Score=30.52 Aligned_cols=99 Identities=15% Similarity=0.144 Sum_probs=52.3
Q ss_pred hhhhhhhh---cCc-cEEEEeCCcchH---HHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHh
Q 007917 80 AADGYARS---RGV-GACVVTFTVGGL---SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCF 152 (585)
Q Consensus 80 ~A~gyar~---tg~-~v~~~t~GpG~~---n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 152 (585)
+|.|.|.+ .+. ..+++..|=|.+ ....++..|.....|+++|.-+......+. . + +....+
T Consensus 83 ~A~G~Ala~k~~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~-------~---~--~~~~~~ 150 (195)
T cd02007 83 AALGMAVARDLKGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPN-------V---G--TPGNLF 150 (195)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCC-------C---C--CHHHHH
Confidence 45555543 233 445555566655 355777777777999999876643321110 0 1 233455
Q ss_pred hhceeEEEE-ecCcchhHHHHHHHHHHhhhcCCcEEEEecC
Q 007917 153 QAITCSQAV-VNNLGDAHELIDTAISTALKESKPVYISISC 192 (585)
Q Consensus 153 ~~~~k~~~~-v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~ 192 (585)
+.+ -|... ..+..+ .+.+.+|++.|...++|+.|.+-.
T Consensus 151 ~a~-G~~~~~~vdG~d-~~~l~~a~~~a~~~~~P~~I~~~T 189 (195)
T cd02007 151 EEL-GFRYIGPVDGHN-IEALIKVLKEVKDLKGPVLLHVVT 189 (195)
T ss_pred Hhc-CCCccceECCCC-HHHHHHHHHHHHhCCCCEEEEEEE
Confidence 542 22221 112222 234566666666667999988653
No 341
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=64.64 E-value=6.3 Score=37.51 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=31.2
Q ss_pred HHHHHhhhCCEEEEeCCccCCcccccccc--cCCCcceEEEcCCceee
Q 007917 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTV 340 (585)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~~~~~~ 340 (585)
.+.+.+.++|++|++|+++.-.....+-. ...+.++|.|+.++...
T Consensus 148 ~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~~~~ 195 (206)
T cd01410 148 GAAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQPTPK 195 (206)
T ss_pred HHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCCCCCC
Confidence 45667789999999999986544333321 12356788898887644
No 342
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=64.39 E-value=6.6 Score=39.08 Aligned_cols=68 Identities=13% Similarity=0.120 Sum_probs=40.5
Q ss_pred HHHHHhhhCCEEEEeCCccCCccccccccc--CCCcceEEEcCCceeecC-C-CccccccHHHHHHHHHHHhc
Q 007917 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTVGN-G-PSLGWVFMADFLSALAKKLR 363 (585)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~~~~~~~~-~-~~~~~~~~~~~l~~L~~~l~ 363 (585)
.+.+.+++||++|++|+++.-..-..+... ..+.++|.|++++..+.. . ......++..++. +.+.++
T Consensus 192 ~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t~~~~~~~d~~i~~~~~~~~~-~~~~~~ 263 (271)
T PTZ00409 192 QAEKEIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKTYITNRISDYHVRAKFSELAQ-ISDILK 263 (271)
T ss_pred HHHHHHHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCCCCCCccccEEEECcHHHHHH-HHHHhc
Confidence 456678899999999999865543333221 245678999988765430 1 1122235555553 334444
No 343
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=64.24 E-value=18 Score=41.23 Aligned_cols=110 Identities=16% Similarity=0.115 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHHhc--CCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHH
Q 007917 220 GLEAAVEATADFLNKA--VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCG 297 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~a--~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~ 297 (585)
..+++++.+++.|++. ++..+++|..... +..-.+++|++.+|.+.+.+......+. +...+.| .++. ..
T Consensus 288 SWdEAl~~iA~kL~~~~~~~ia~i~g~~~~~-E~~~~lkkl~~~lGs~nid~~~~~~~~~---~~~~~~~--~~~~-si- 359 (687)
T PRK09130 288 SWDEAFAAIAAKIKGTPGEKIAAIAGDLADV-ESMFALKDLMQKLGSSNLDCRQDGAKLD---PSLRASY--LFNT-TI- 359 (687)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCCCCH-HHHHHHHHHHHHcCCCccccccchhhhh---hhhhccC--CCCC-CH-
Confidence 4577888889888875 4567777776654 4556889999999988776432111111 1011111 1111 12
Q ss_pred HHhhhCCEEEEeCCccCCccccccc----ccCCC-cceEEEcCCc
Q 007917 298 EIVESADAYVFVGPIFNDYSSVGYS----LLIKK-EKAIIVQPHR 337 (585)
Q Consensus 298 ~~l~~aD~vl~lG~~~~~~~~~~~~----~~~~~-~~~i~id~~~ 337 (585)
+-++++|+||++|+.+.+.....+. .+..+ .+++.||+..
T Consensus 360 ~dIe~AD~IlliG~Np~~eaPvl~~rirka~~~g~~kIivIdpr~ 404 (687)
T PRK09130 360 AGIEEADAILLIGANPRFEAPVLNARIRKRWRAGGFKIAVIGEQA 404 (687)
T ss_pred HHHHhCCEEEEEccCcccccHHHHHHHHHHHHcCCCeEEEEcCcc
Confidence 2368999999999986443321111 11223 4889898764
No 344
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=64.00 E-value=36 Score=33.68 Aligned_cols=96 Identities=13% Similarity=0.068 Sum_probs=56.1
Q ss_pred cEEEEeCCcchH-H---HHHHHHHhhhcCCc---EEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhh--ceeEEEE
Q 007917 91 GACVVTFTVGGL-S---VLNAIAGAYSENLP---VICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQA--ITCSQAV 161 (585)
Q Consensus 91 ~v~~~t~GpG~~-n---~~~gl~~A~~~~~P---ll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~k~~~~ 161 (585)
.++++..|=|+. | ..-++-=|..-+.| +|+|.-+.... ..+.. .+..... +..+..+. +.-....
T Consensus 141 ~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq~g-~sT~~--~~~~~~~---~~~~~a~~~gip~~~Vd 214 (265)
T cd02016 141 VLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQIG-FTTDP--RDSRSSP---YCTDVAKMIGAPIFHVN 214 (265)
T ss_pred eEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEE-EEecH--HHhcccc---cHHHHHeecCCCEEEEc
Confidence 677777786663 2 33333335556676 88888763322 11100 0000001 11223333 3334455
Q ss_pred ecCcchhHHHHHHHHHHhhhcCCcEEEEecC
Q 007917 162 VNNLGDAHELIDTAISTALKESKPVYISISC 192 (585)
Q Consensus 162 v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~ 192 (585)
=.+++.+.+.+++|++.++...||+.|++-.
T Consensus 215 G~D~~aV~~a~~~A~~~~r~g~gp~lIe~~t 245 (265)
T cd02016 215 GDDPEAVVRATRLALEYRQKFKKDVVIDLVC 245 (265)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 5688899999999999999999999999853
No 345
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=63.42 E-value=56 Score=29.68 Aligned_cols=99 Identities=22% Similarity=0.236 Sum_probs=54.6
Q ss_pred hHHHHHHHhhhcCCCcEEEEEcCchhH-----hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHh
Q 007917 444 SVGATLGYAQAAKDKRVIACIGDGSFQ-----EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAI 518 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v~GDGsf~-----eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 518 (585)
.++.|.|.++.. .++++..... |+ .+.+...++ ++.+|+....++.... ++. .=+..+...+.+.+
T Consensus 61 ~vg~a~GlA~~G-~~pi~~~~~~--f~~~a~~~~~~~~~~~-~~~~v~~~~~g~~~g~---~G~--tH~~~~~~~~~~~i 131 (168)
T smart00861 61 MVGFAAGLALAG-LRPVVAIFFT--FFDRAKDQIRSDGAMG-RVPVVVRHDSGGGVGE---DGP--THHSQEDEALLRAI 131 (168)
T ss_pred HHHHHHHHHHcC-CCcEEEeeHH--HHHHHHHHHHHhCccc-CCCEEEEecCccccCC---CCc--cccchhHHHHHhcC
Confidence 456778887764 3666666643 43 444444555 4555555543332200 111 00122333333333
Q ss_pred cCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEE
Q 007917 519 HNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEV 556 (585)
Q Consensus 519 G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV 556 (585)
- ++..+...+++|++..++.++. ..++|.+|-+
T Consensus 132 P----~~~v~~P~~~~e~~~~l~~a~~-~~~~p~~i~~ 164 (168)
T smart00861 132 P----GLKVVAPSDPAEAKGLLRAAIR-RDDGPPVIRL 164 (168)
T ss_pred C----CcEEEecCCHHHHHHHHHHHHh-CCCCCEEEEe
Confidence 2 2477888999999999999995 3367877643
No 346
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=62.45 E-value=13 Score=40.88 Aligned_cols=116 Identities=19% Similarity=0.186 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHhc------CCCEEEeCcccchhchHHHHHHHHHHhCC-CeEEccCCccCCCC--CCCCceeeecCC
Q 007917 220 GLEAAVEATADFLNKA------VKPVLVGGPNIRVAKAQKAFIELADATGY-PIAIMPSGKGLVPE--HHPHFIGTYWGA 290 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~a------~rpvIi~G~g~~~~~a~~~l~~lae~l~~-Pv~~t~~gkg~~~~--~hp~~~G~~~g~ 290 (585)
..+++++.+++.|++. ++..++.|.+... .....+.+|++.++. +.+.........+. .+...+|. +.
T Consensus 70 sWdeAl~~ia~~l~~~~~~~g~~~v~~~~~~~~~~-e~~~~~~~~~~~~g~s~~~~~~~~~c~~~~~~~~~~~~G~--~~ 146 (512)
T cd02753 70 SWDEALSLVASRLKEIKDKYGPDAIAFFGSAKCTN-EENYLFQKLARAVGGTNNVDHCARLCHSPTVAGLAETLGS--GA 146 (512)
T ss_pred cHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCCc-HHHHHHHHHHHHhcCCCccCCCcccccchhhHHHHhhcCC--CC
Confidence 3567888888888753 4566666655432 334567788887765 23321110000000 00111121 11
Q ss_pred CCCHHHHHHhhhCCEEEEeCCccCCccccccc----ccCCCcceEEEcCCceee
Q 007917 291 VSSSFCGEIVESADAYVFVGPIFNDYSSVGYS----LLIKKEKAIIVQPHRVTV 340 (585)
Q Consensus 291 ~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~----~~~~~~~~i~id~~~~~~ 340 (585)
.+. ...-+.++|+||++|+.+.......+. ....+.++|.||+.....
T Consensus 147 ~~~--~~~d~~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~~s~t 198 (512)
T cd02753 147 MTN--SIADIEEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPRRTEL 198 (512)
T ss_pred CCC--CHHHHHhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCCCccc
Confidence 111 123467999999999876443321111 112356899999876543
No 347
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=62.28 E-value=10 Score=37.20 Aligned_cols=61 Identities=15% Similarity=0.221 Sum_probs=40.4
Q ss_pred eccCcccccchHHHHHHHhhhc-------CCCcEEEEEcCchhH----------------hHHHHHHhCCCeEEEEEeCC
Q 007917 434 FQMQYGSIGWSVGATLGYAQAA-------KDKRVIACIGDGSFQ----------------EISTMIRCGQRSIIFLINNG 490 (585)
Q Consensus 434 ~~~~~g~mG~~lpaAiGaalA~-------p~~~vv~v~GDGsf~----------------eL~ta~~~~lpv~ivV~NN~ 490 (585)
....+.-||++++...|.++.+ ...|+|++.--|+.- .|....+.++|.+.|+-|=-
T Consensus 127 av~df~FmgGSmGsVvGeki~ra~E~A~e~k~P~v~f~aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PT 206 (294)
T COG0777 127 AVMDFAFMGGSMGSVVGEKITRAIERAIEDKLPLVLFSASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPT 206 (294)
T ss_pred EEEeccccccchhHHHHHHHHHHHHHHHHhCCCEEEEecCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCC
Confidence 3344566777777777777643 257899999888874 22223356899887777766
Q ss_pred ceee
Q 007917 491 GYTI 494 (585)
Q Consensus 491 ~~~~ 494 (585)
.+|+
T Consensus 207 tGGV 210 (294)
T COG0777 207 TGGV 210 (294)
T ss_pred ccch
Confidence 5555
No 348
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=61.93 E-value=37 Score=32.86 Aligned_cols=97 Identities=11% Similarity=0.091 Sum_probs=53.0
Q ss_pred hHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHH--HHH
Q 007917 444 SVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGL--VNA 517 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~l--a~a 517 (585)
++.+++|++++ +.+++..+-=.++. -|..+.-.++|+++++.|-.+=+-.... ..+...+ ++-
T Consensus 48 A~~~~~GAs~a--G~ra~t~ts~~Gl~lm~e~l~~a~~~~~P~V~~~~~R~g~~~g~~~---------~~~q~D~~~~~d 116 (230)
T PF01855_consen 48 AMEAAIGASAA--GARAMTATSGPGLNLMAEPLYWAAGTELPIVIVVVQRAGPSPGLST---------QPEQDDLMAARD 116 (230)
T ss_dssp HHHHHHHHHHT--T--EEEEEECCHHHHHCCCHHHHHHTT--EEEEEEEB---SSSB-----------SB-SHHHHHTTT
T ss_pred HHHHHHHHHhc--CCceEEeecCCcccccHhHHHHHHHcCCCEEEEEEECCCCCCCCcC---------cCChhHHHHHHh
Confidence 67889999987 56777777666776 8888889999999999876542210000 1112222 224
Q ss_pred hcCCCCCccEEEecCHHHHHHHHHHhhh--cCCCCeEEEEE
Q 007917 518 IHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEV 556 (585)
Q Consensus 518 ~G~~~~~~~~~~v~~~~eL~~al~~a~~--~~~~gp~vIeV 556 (585)
+|+ -.+...|..|.-.....|+. .+..-|+++-.
T Consensus 117 ~~~-----~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~ 152 (230)
T PF01855_consen 117 SGW-----IVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLF 152 (230)
T ss_dssp SS------EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEE
T ss_pred cCe-----EEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 555 55566677776665555543 23456776643
No 349
>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=61.66 E-value=36 Score=33.83 Aligned_cols=77 Identities=12% Similarity=0.056 Sum_probs=48.0
Q ss_pred HHHHHHhhhCCEEEEeCCccCCccccccc--ccCCCcceEEEcCCceeecC-CCccccccHHHHHHHHHHHhccCccchh
Q 007917 294 SFCGEIVESADAYVFVGPIFNDYSSVGYS--LLIKKEKAIIVQPHRVTVGN-GPSLGWVFMADFLSALAKKLRKNTTALE 370 (585)
Q Consensus 294 ~~~~~~l~~aD~vl~lG~~~~~~~~~~~~--~~~~~~~~i~id~~~~~~~~-~~~~~~~~~~~~l~~L~~~l~~~~~~~~ 370 (585)
..+.+...+||++|.+|+++.-...+.|. ......|++.|+..+..-.. .+.....+.+.++..|.+.|.-.-..+.
T Consensus 208 ~~a~~a~~~Ad~~lcLGTSLqI~p~g~lpl~~~k~g~K~~ivNlQ~T~hDk~A~l~Ihg~vd~Vm~~lm~~LgveIp~y~ 287 (353)
T KOG1905|consen 208 DRATKAAKRADLILCLGTSLQILPKGNLPLKMKKRGGKIVIVNLQWTPHDKIANLKIHGKVDLVMASLMELLGVEIPAYD 287 (353)
T ss_pred HHHHHHhhhcceEEEeccceEeeeCCCcchhHhccCceEEEEeCccCcccchhheeehhhHHHHHHHHHHHhCCCCCccc
Confidence 35677889999999999998655544443 23345678888776543220 1122223567888888888765433333
No 350
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=61.24 E-value=7.1 Score=37.75 Aligned_cols=46 Identities=22% Similarity=0.219 Sum_probs=30.3
Q ss_pred HHHHHhhhCCEEEEeCCccCCcccccccccC-CCcceEEEcCCceee
Q 007917 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLLI-KKEKAIIVQPHRVTV 340 (585)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~-~~~~~i~id~~~~~~ 340 (585)
.+.+.++++|++|++|+++.-..-..+-... ++.++|.|+.++..+
T Consensus 164 ~~~~~~~~~DlllviGTSl~v~p~~~l~~~~~~~~~~i~iN~~~~~~ 210 (225)
T cd01411 164 EAIQAIEKADLLVIVGTSFVVYPFAGLIDYRQAGANLIAINKEPTQL 210 (225)
T ss_pred HHHHHHhcCCEEEEECcCCeehhHHHHHHHHhCCCeEEEECCCCCCC
Confidence 3556778999999999977543322221112 366788899887655
No 351
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=61.24 E-value=42 Score=36.85 Aligned_cols=100 Identities=22% Similarity=0.145 Sum_probs=66.0
Q ss_pred chHHHHHHHhhhcCCCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHH
Q 007917 443 WSVGATLGYAQAAKDKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVN 516 (585)
Q Consensus 443 ~~lpaAiGaalA~p~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~ 516 (585)
+++-.|-|.+.+ .-+||+++- .+|+ =+....-+++|+++.|--.+-.|..-..|.|. +|..-+.-
T Consensus 369 HAVT~AAGlA~~-G~kPvvaIY--STFLQRAYDQliHDvaiqnLPV~faIDRAGivG~DG~TH~G~------fDls~l~~ 439 (627)
T COG1154 369 HAVTFAAGLAAE-GMKPVVAIY--STFLQRAYDQLIHDVAIQNLPVTFAIDRAGIVGADGPTHQGL------FDLSFLRC 439 (627)
T ss_pred HHHHHHHHHHhC-CCCCEEEEe--cHHHHHHHHHHHHHHHhccCCeEEEEecCcccCCCCCccccH------HHHHHHhc
Confidence 455566666653 468899986 5787 23345678999988887777666522223332 24444433
Q ss_pred HhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEE
Q 007917 517 AIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVF 557 (585)
Q Consensus 517 a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~ 557 (585)
-=|. .....++.+|++..|..++. ..++|+.|..+
T Consensus 440 iPnm-----vi~aP~de~el~~ml~ta~~-~~~gP~AiRyP 474 (627)
T COG1154 440 IPNM-----VIMAPRDEEELRQMLYTALA-QDDGPVAIRYP 474 (627)
T ss_pred CCCc-----EEecCCCHHHHHHHHHHHHh-cCCCCeEEEec
Confidence 3333 56667899999999999996 34489998766
No 352
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=61.15 E-value=15 Score=30.15 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=28.9
Q ss_pred cCCCEEEeCcccchhchHHHHHHHHHHhCCCeEE
Q 007917 235 AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (585)
Q Consensus 235 a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~ 268 (585)
.++.++++|.|...+-....++++++..|+++-.
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v 36 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKI 36 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEE
Confidence 4678999999998877789999999999988643
No 353
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=60.03 E-value=20 Score=35.95 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=34.1
Q ss_pred CEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh-hhCCEEEEeCCc
Q 007917 238 PVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV-ESADAYVFVGPI 312 (585)
Q Consensus 238 pvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l-~~aD~vl~lG~~ 312 (585)
-+|+++.... ..-....+||.+++||++|+.|. | ...-..+.+ .+.|.||.+|..
T Consensus 30 ~VIlvsDn~a---D~~lA~~iaellNA~Vlttpwg~-------------y----nes~~~eI~~lnpd~VLIIGGp 85 (337)
T COG2247 30 VVILVSDNEA---DLLLALPIAELLNAPVLTTPWGI-------------Y----NESVLDEIIELNPDLVLIIGGP 85 (337)
T ss_pred EEEEecchHH---HHHHhhHHHHHhCCeeEecCccc-------------c----cHHHHHHHHhhCCceEEEECCC
Confidence 4455444332 23345669999999999987432 1 212233444 589999999964
No 354
>PRK09939 putative oxidoreductase; Provisional
Probab=60.01 E-value=8.9 Score=44.11 Aligned_cols=113 Identities=16% Similarity=0.081 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHHHhcCCC--EEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCC---CCCCceeeecCCCCCH
Q 007917 220 GLEAAVEATADFLNKAVKP--VLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPE---HHPHFIGTYWGAVSSS 294 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~a~rp--vIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~---~hp~~~G~~~g~~~~~ 294 (585)
..+++++.+++.|++.+.| +.+.++|-...++.-.+..|+..+|-+-+.+.. +-+-.. .....+|. |. +.-
T Consensus 126 SWdEAl~~Ia~~L~~i~~p~~i~~y~sg~~snE~~yl~q~f~r~~Gtnn~~~~s-~~C~~~~~~~l~~~~G~--g~-~t~ 201 (759)
T PRK09939 126 SWQQAFDEIGARLQSYSDPNQVEFYTSGRTSNEAAFLYQLFAREYGSNNFPDCS-NMCHEPTSVGLAASIGV--GK-GTV 201 (759)
T ss_pred cHHHHHHHHHHHHHhhcCCCeEEEEeeCCchHHHHHHHHHHHHHhCCcccCCCC-CCCchHHHHHHHHhcCC--CC-CCC
Confidence 4678899999988876555 333333332223444677888888866553211 100000 00011232 11 111
Q ss_pred HHHHHhhhCCEEEEeCCccCCccccccc----ccCCCcceEEEcCCc
Q 007917 295 FCGEIVESADAYVFVGPIFNDYSSVGYS----LLIKKEKAIIVQPHR 337 (585)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~----~~~~~~~~i~id~~~ 337 (585)
... -+.+||+||++|+...+.....+. ....+.++|.||+-.
T Consensus 202 ~l~-Di~~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~ 247 (759)
T PRK09939 202 LLE-DFEKCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQ 247 (759)
T ss_pred CHH-HHhhCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 222 358999999999876443221111 112456899999854
No 355
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=59.68 E-value=45 Score=32.92 Aligned_cols=102 Identities=22% Similarity=0.037 Sum_probs=63.0
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCC-------CCeEEecCchhhHH-----------H-hhhhhhh-
Q 007917 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEP-------ELNLVGCCNELNAG-----------Y-AADGYAR- 86 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~-------~i~~i~~~~E~~A~-----------~-~A~gyar- 86 (585)
-...+.+++.|++.|-=++||.=++....++|+.+..+ .+..+..-.+.+.. + +.+=.+.
T Consensus 36 ~~av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~~edd~~~~~~~l~a~~ 115 (257)
T cd05007 36 ARAVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEGAEDDEEAGAADLQAIN 115 (257)
T ss_pred HHHHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccccCChHHHHHHHHHHcC
Confidence 45678899999999887888887777777777765322 23334333322111 0 1110111
Q ss_pred hcCccEEEEeCCcch-HHHHHHHHHhhhcCCcEEEEeCCCCCc
Q 007917 87 SRGVGACVVTFTVGG-LSVLNAIAGAYSENLPVICIVGGPNSN 128 (585)
Q Consensus 87 ~tg~~v~~~t~GpG~-~n~~~gl~~A~~~~~Pll~I~g~~~~~ 128 (585)
.+..-+++..|..|- -..+.++..|...+.|+|.||+.....
T Consensus 116 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~ 158 (257)
T cd05007 116 LTERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSP 158 (257)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 122345555555564 447888888999999999999876554
No 356
>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.
Probab=59.64 E-value=15 Score=42.29 Aligned_cols=113 Identities=19% Similarity=0.105 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHhc--CCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCC--CCCceeeecCCCCCHH
Q 007917 220 GLEAAVEATADFLNKA--VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEH--HPHFIGTYWGAVSSSF 295 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~a--~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~--hp~~~G~~~g~~~~~~ 295 (585)
..+++++.+++.|++. +...++.++... .+..-...+|+..+|.+-+.+...-.--+.. ....+|.. .++.
T Consensus 117 SWdEAl~~IA~kL~~~~p~~i~~y~sg~~s-~e~~~~~~~f~r~lGt~n~~~~s~~C~~~~~~al~~~~G~~---~~t~- 191 (743)
T TIGR01701 117 SWDDAYQEIAAKLNSLDPKQVAFYTSGRTS-NEAAYLYQLFARSLGSNNLPDCSNMCHEPSSVALKRSIGIG---KGSV- 191 (743)
T ss_pred cHHHHHHHHHHHHHhcCCCeEEEEecCCcc-hHHHHHHHHHHHHhCCCCcCCCcccccchhhHHHHHhcCCC---CCCC-
Confidence 4678889999988875 444555554332 2344456788888887654321100000000 01122321 1111
Q ss_pred HHHHhhhCCEEEEeCCccCCcccccccc----cCCCcceEEEcCCc
Q 007917 296 CGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHR 337 (585)
Q Consensus 296 ~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~~~ 337 (585)
..+-+.++|+||++|+.........+.. ...+.++|.||+..
T Consensus 192 ~~~Di~~ad~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~ 237 (743)
T TIGR01701 192 NLEDFEHTDCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLR 237 (743)
T ss_pred CHhHHHhCCEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 1234578999999998865443222221 12467999999854
No 357
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=59.35 E-value=10 Score=33.00 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCC
Q 007917 223 AAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSG 272 (585)
Q Consensus 223 ~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~g 272 (585)
+.-.+..+.+-+.+-|.||+-.|.. ..+.+.++|++.++|++.|...
T Consensus 68 ~~r~~~l~~l~~~~~P~iIvt~~~~---~p~~l~e~a~~~~ipll~t~~~ 114 (127)
T PF02603_consen 68 EERKERLEKLFSYNPPCIIVTRGLE---PPPELIELAEKYNIPLLRTPLS 114 (127)
T ss_dssp HHHCCHHHHHCTTT-S-EEEETTT------HHHHHHHHHCT--EEEESS-
T ss_pred HHHHHHHHHHhCCCCCEEEEECcCC---CCHHHHHHHHHhCCcEEEcCCc
Confidence 3444556667778899999988873 6899999999999999998753
No 358
>PRK13761 hypothetical protein; Provisional
Probab=58.83 E-value=24 Score=33.58 Aligned_cols=48 Identities=25% Similarity=0.234 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEc
Q 007917 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (585)
Q Consensus 221 ~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t 269 (585)
...+.+.++.+|.-|++|||=+-+.... -+.+++.+||+.+++++=..
T Consensus 53 A~~A~raAaA~LLlA~~PVISVNGN~AA-L~p~eiveLa~~~~A~iEVN 100 (248)
T PRK13761 53 ALEAERAAAALLLLAKHPVISVNGNTAA-LVPEEIVELAEALNAKLEVN 100 (248)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEcchHHh-hChHHHHHHHHHhCCCEEEE
Confidence 4556778888899999999988776653 46899999999999998654
No 359
>PRK13938 phosphoheptose isomerase; Provisional
Probab=58.40 E-value=56 Score=30.81 Aligned_cols=101 Identities=18% Similarity=0.154 Sum_probs=60.7
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHH--hhhc-----CCCCeEEecCchhhHHHhh----hhhh----hh---c
Q 007917 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLD--HLIA-----EPELNLVGCCNELNAGYAA----DGYA----RS---R 88 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~--al~~-----~~~i~~i~~~~E~~A~~~A----~gya----r~---t 88 (585)
...++.+++.|++.|-=++||+-|+....-.. .|.. .+.+..+....+ .+-..| .||. +. .
T Consensus 32 ~~~a~~~~~~l~~g~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~-~~~~~a~~nd~~~~~~~~~~~~~~ 110 (196)
T PRK13938 32 RAIGDRLIAGYRAGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHAN-SSHLTAVANDYDYDTVFARALEGS 110 (196)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEEeCC-hHHHHHhhccccHHHHHHHHHHhc
Confidence 46678889999999999999997765443322 2321 122333322222 222222 1222 21 1
Q ss_pred -Cc-cEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCCCCc
Q 007917 89 -GV-GACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNSN 128 (585)
Q Consensus 89 -g~-~v~~~t~GpG-~~n~~~gl~~A~~~~~Pll~I~g~~~~~ 128 (585)
.. -++++.|..| ..+.+.++..|...++|+|.||+.....
T Consensus 111 ~~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~ 153 (196)
T PRK13938 111 ARPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQ 153 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCh
Confidence 22 4555555555 5668899999999999999999975443
No 360
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=57.87 E-value=24 Score=31.57 Aligned_cols=67 Identities=19% Similarity=0.185 Sum_probs=44.5
Q ss_pred CCcEEEEEcCchhH-----hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEe-
Q 007917 457 DKRVIACIGDGSFQ-----EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKV- 530 (585)
Q Consensus 457 ~~~vv~v~GDGsf~-----eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v- 530 (585)
.++.+.++.||.-. .+..+.+.++++.+|-+....-. .-.+..+|+.-|+ .++.+
T Consensus 99 ~~~~iv~iTDG~~~~~~~~~~~~~~~~~i~i~~v~~~~~~~~--------------~~~l~~la~~tgG-----~~~~~~ 159 (172)
T PF13519_consen 99 RRRAIVLITDGEDNSSDIEAAKALKQQGITIYTVGIGSDSDA--------------NEFLQRLAEATGG-----RYFHVD 159 (172)
T ss_dssp EEEEEEEEES-TTHCHHHHHHHHHHCTTEEEEEEEES-TT-E--------------HHHHHHHHHHTEE-----EEEEE-
T ss_pred CceEEEEecCCCCCcchhHHHHHHHHcCCeEEEEEECCCccH--------------HHHHHHHHHhcCC-----EEEEec
Confidence 56799999999866 23333445555555544443221 1247899999998 89999
Q ss_pred cCHHHHHHHHHH
Q 007917 531 RSEDELTEAMKT 542 (585)
Q Consensus 531 ~~~~eL~~al~~ 542 (585)
.+.++|.++|++
T Consensus 160 ~~~~~l~~~~~~ 171 (172)
T PF13519_consen 160 NDPEDLDDAFQQ 171 (172)
T ss_dssp SSSHHHHHHHHH
T ss_pred CCHHHHHHHHhc
Confidence 588999999875
No 361
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=57.39 E-value=58 Score=33.75 Aligned_cols=88 Identities=19% Similarity=0.233 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCcccchh----chHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHH
Q 007917 222 EAAVEATADFLNKAVKPVLVGGPNIRVA----KAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCG 297 (585)
Q Consensus 222 ~~~~~~~~~~l~~a~rpvIi~G~g~~~~----~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~ 297 (585)
.+.++++++++.++++++++.|.+..+. .....+..|+..+|-- ...|.+.+...+|++.- .......
T Consensus 230 ~~~i~~la~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~l~~l~G~~---~~~g~~~~~~~np~~~~-----~~~~~~~ 301 (374)
T cd00368 230 AETIRALAREFAAAKRAVILWGMGLTQHTNGTQNVRAIANLAALTGNI---GRPGGGLGPGGNPLVSA-----PDANRVR 301 (374)
T ss_pred HHHHHHHHHHHHhCCCeEEEeccccceecccHHHHHHHHHHHHHhCCC---CCCCCcCCCCCChhhcC-----CCHHHHH
Confidence 3568899999999999999999888542 2344445555554431 11233344444454321 1123455
Q ss_pred HHhhhCCEEEEeCCccCCcc
Q 007917 298 EIVESADAYVFVGPIFNDYS 317 (585)
Q Consensus 298 ~~l~~aD~vl~lG~~~~~~~ 317 (585)
+++++.|+++++...+++..
T Consensus 302 ~al~~~~~~V~~d~~~~eta 321 (374)
T cd00368 302 AALKKLDFVVVIDIFMTETA 321 (374)
T ss_pred HHHhCCCeEEEEecCCCcch
Confidence 78889999999988776543
No 362
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=56.80 E-value=27 Score=40.52 Aligned_cols=114 Identities=14% Similarity=0.009 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHHhc------CCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCC
Q 007917 220 GLEAAVEATADFLNKA------VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSS 293 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~a------~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~ 293 (585)
..+++++.+++.|++. +...++.|.... .+....+.+|++.+|.+.+.......... ......|. +..+.
T Consensus 288 SWdeAl~~ia~~L~~i~~~~G~~~i~~~~s~~~t-~e~~~~~~~f~~~~Gt~n~~~~~~~~~~~-~~~~~~g~--~~~~~ 363 (776)
T PRK09129 288 DWETALEYVAEGLKGIIEDHGADQIGALASPHST-LEELYLLQKLARGLGSGNIDHRLRQQDFR-DDAAAPGA--PWLGM 363 (776)
T ss_pred CHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCCCC-HHHHHHHHHHHHHhCCCccccccCCcccc-chhhhhcc--cccCC
Confidence 4567888888888753 334555554443 23456788999999987654321110000 00000111 11222
Q ss_pred HHHHHHhhhCCEEEEeCCccCCcccccccc----cCCCcceEEEcCCcee
Q 007917 294 SFCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVT 339 (585)
Q Consensus 294 ~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~~~~~ 339 (585)
...-+.++|+||++|+.+.+.....+.. ..++.++|.||+...+
T Consensus 364 --~~~Di~~ad~Il~~G~N~~~~~p~~~~~i~~a~~~G~klividpr~t~ 411 (776)
T PRK09129 364 --PIAELSNLDAVLVVGSNLRKEHPLLAARLRQAAKNGAKLSAINPVDDD 411 (776)
T ss_pred --CHHHHHhCCEEEEEecCcchhcHHHHHHHHHHHHCCCeEEEecCCccc
Confidence 1334678999999998865443221111 1235689999985543
No 363
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=56.60 E-value=8 Score=42.32 Aligned_cols=116 Identities=15% Similarity=-0.006 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHhcC------CCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCC
Q 007917 220 GLEAAVEATADFLNKAV------KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSS 293 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~a~------rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~ 293 (585)
..+++++.+++.|++.+ ...++.+.+.........+.+|+..+|.+-+......+..-.-+...+|. ...
T Consensus 74 sWdeAl~~ia~~l~~i~~~~G~~si~~~~~~g~~~~~~~~~~~~~~~~~Gs~~~~~~~c~~~~~~~~~~~~G~----~~~ 149 (501)
T cd02766 74 SWDEALDTIAAKLKEIKAEYGPESILPYSYAGTMGLLQRAARGRFFHALGASELRGTICSGAGIEAQKYDFGA----SLG 149 (501)
T ss_pred cHHHHHHHHHHHHHHHHHhhCCcEEEEecccCCccccchHHHHHHHHhCCCCCCCCCccHHHHHHHHHhhcCC----CCC
Confidence 35778888888887543 33434444433211122236787777766542111000000000111222 110
Q ss_pred HHHHHHhhhCCEEEEeCCccCCcccccccc----cCCCcceEEEcCCceee
Q 007917 294 SFCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVTV 340 (585)
Q Consensus 294 ~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~~~~~~ 340 (585)
...+-+.++|+||++|+...+.....+.. ...+.|+|.||+.....
T Consensus 150 -~~~~d~~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDPr~t~t 199 (501)
T cd02766 150 -NDPEDMVNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPYRTAT 199 (501)
T ss_pred -CCHHHHhcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECCCCCcc
Confidence 12345689999999998865433322221 12456899999876543
No 364
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=56.25 E-value=23 Score=36.01 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEc
Q 007917 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (585)
Q Consensus 222 ~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t 269 (585)
...+.+++.++.+..+.|+++-+..-|++|.++|..+++++|+||+.-
T Consensus 153 TTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~ 200 (340)
T COG0552 153 TTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISG 200 (340)
T ss_pred HhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEcc
Confidence 346788888888877777777777778899999999999999999984
No 365
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=54.09 E-value=26 Score=37.66 Aligned_cols=90 Identities=20% Similarity=0.296 Sum_probs=55.0
Q ss_pred CcEEE--EEcCchhH------hHHHHH---HhCCC-eEEEEEeCC-ceeeeeeecCCCCCCCCCCCHHHHHHHhcCCCCC
Q 007917 458 KRVIA--CIGDGSFQ------EISTMI---RCGQR-SIIFLINNG-GYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGK 524 (585)
Q Consensus 458 ~~vv~--v~GDGsf~------eL~ta~---~~~lp-v~ivV~NN~-~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~ 524 (585)
..|++ +-||++|. |-.+.. ++++. -+.+|.||. +|..... .|. ...--..+|+++++
T Consensus 318 d~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~--rGR----Ss~ycsDiaK~~~~---- 387 (913)
T KOG0451|consen 318 DHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGD--RGR----SSAYCSDIAKSIQA---- 387 (913)
T ss_pred CceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccCccc--ccc----cchhhhHHHHHhCC----
Confidence 45665 56999997 333322 23332 455666776 3333100 010 22345789999998
Q ss_pred ccEEEe--cCHHHHHHHHHHhhh--cCCCCeEEEEEEc
Q 007917 525 CWTAKV--RSEDELTEAMKTATG--EQKDSLCFIEVFV 558 (585)
Q Consensus 525 ~~~~~v--~~~~eL~~al~~a~~--~~~~gp~vIeV~v 558 (585)
..+.| ++++++..+-+-|++ .+-.+-++|++.+
T Consensus 388 -pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~C 424 (913)
T KOG0451|consen 388 -PVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNC 424 (913)
T ss_pred -CEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHH
Confidence 77777 589999998888876 3345667887765
No 366
>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type. This model is well-defined, with a large, unpopulated trusted/noise gap.
Probab=53.96 E-value=15 Score=43.67 Aligned_cols=114 Identities=12% Similarity=0.097 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhcCC-----------------CEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCC---CC
Q 007917 221 LEAAVEATADFLNKAVK-----------------PVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPE---HH 280 (585)
Q Consensus 221 ~~~~~~~~~~~l~~a~r-----------------pvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~---~h 280 (585)
.+++++.+++.|++.+. -+.+.+++....+..-.+.+|+..+|.+-+... ++-.... ..
T Consensus 125 WDEAld~IA~kLk~i~~~~~~~~~~~G~~~~~~~sia~~~s~~~tnEe~yl~~kf~r~lGt~n~~~~-~~~C~~~~~~al 203 (1009)
T TIGR01553 125 WDWAIDTIARRVKDTRDATFVTKDAKGQVVNRCDGIASVGSSAMDNEECWLYQKWLRSLGLFYIEHQ-ARIUHSPTVASL 203 (1009)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCccccccceEEEEecCCCCcHHHHHHHHHHHHhCCCcccCc-ccccccHHHHHH
Confidence 56777788777765321 134444333222334457889988887654322 1111000 00
Q ss_pred CCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccc----cCCCcceEEEcCCcee
Q 007917 281 PHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVT 339 (585)
Q Consensus 281 p~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~~~~~ 339 (585)
...+|. +.... ...-+.++|+||++|+...+.....+.. ...+.++|.||+....
T Consensus 204 ~~~~G~--~~~~~--~~~Di~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDPR~t~ 262 (1009)
T TIGR01553 204 APSFGR--GAMTN--NWVDIKNSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDPRFNR 262 (1009)
T ss_pred HHhhcC--CCCCC--CHHHHHhCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcCCCCc
Confidence 112232 11111 1233689999999998865443322221 1245689999986543
No 367
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=52.90 E-value=28 Score=28.54 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=27.0
Q ss_pred CCEEEeCcccchhchHHHHHHHHHHhCCCeEE
Q 007917 237 KPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (585)
Q Consensus 237 rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~ 268 (585)
|.++++|.|...+-..+.++++++..|+|+-.
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v 32 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDAEI 32 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCceEE
Confidence 45789999998887788999999999988643
No 368
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=51.47 E-value=56 Score=30.83 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=29.9
Q ss_pred cEEEEeCCcchHHHHHHH-HHhhhcCCcEEEEeCCCCCc
Q 007917 91 GACVVTFTVGGLSVLNAI-AGAYSENLPVICIVGGPNSN 128 (585)
Q Consensus 91 ~v~~~t~GpG~~n~~~gl-~~A~~~~~Pll~I~g~~~~~ 128 (585)
=+++..||.|-+.-+..+ --|..-++|+|.||+.+.+.
T Consensus 88 DvviaiS~SGeT~el~~~~~~aK~~g~~liaiT~~~~Ss 126 (202)
T COG0794 88 DVVIAISGSGETKELLNLAPKAKRLGAKLIAITSNPDSS 126 (202)
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHcCCcEEEEeCCCCCh
Confidence 488888999988855544 45888999999999986554
No 369
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=51.10 E-value=4.2e+02 Score=31.25 Aligned_cols=178 Identities=13% Similarity=-0.008 Sum_probs=93.2
Q ss_pred CCCeEEecCchhhHHH--hhhhhhhhc-Cc--cEEEEeCCcc-hHHHHHHHH-HhhhcCCcEEEEeCCCCCccCCCccce
Q 007917 64 PELNLVGCCNELNAGY--AADGYARSR-GV--GACVVTFTVG-GLSVLNAIA-GAYSENLPVICIVGGPNSNDYGTNRIL 136 (585)
Q Consensus 64 ~~i~~i~~~~E~~A~~--~A~gyar~t-g~--~v~~~t~GpG-~~n~~~gl~-~A~~~~~Pll~I~g~~~~~~~~~~~~~ 136 (585)
++=-+-....|+++.. +|.|-|..+ |+ -.+.++..+= ..-+.-=+- .+.+...++++.+........+-+ .-
T Consensus 564 PgRf~e~GIAEqnmv~~~vAAGlA~a~~G~g~iPF~~tya~F~~~Ra~Dqir~a~~~~~~~v~iggt~gg~tl~~eG-~q 642 (891)
T PRK09405 564 DGQILQEGINEAGAMASWIAAATSYSTHGEPMIPFYIYYSMFGFQRIGDLAWAAGDQRARGFLLGGTAGRTTLNGEG-LQ 642 (891)
T ss_pred CCcEEEechhhhHHHHHHHHHHHhhhhcCCCceEEEEehHHhhhhhHHHHHHHHHHhcCCCeEEEEECccccCCCCc-cc
Confidence 5555667889999888 888877764 44 3344455542 222333222 223345565555544333322111 12
Q ss_pred eeccCCCChHHHHHHhhhcee-EEEEecCcchhHHHHHHHHHHhhhcCC--cEEEEecCCCCCCCCCCCCCCCCCccCCC
Q 007917 137 HHTIGLPDFTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKESK--PVYISISCNLPGIPHPTFARDPVPFFLAP 213 (585)
Q Consensus 137 ~~~~~~~~~~d~~~~~~~~~k-~~~~v~~~~~~~~~l~~A~~~a~~~~g--PV~i~iP~dv~~~~~~~~~~~~~~~~~~~ 213 (585)
| +......+++.+.. -.+...++.++..+++.+++.+....+ |+||.+. +.... .+. .++....
T Consensus 643 H------qdg~s~~l~raiPn~tv~~PADa~E~a~iv~~~l~rm~~~~~~~~yYlrl~-ne~~~-~~~-~pe~~~~---- 709 (891)
T PRK09405 643 H------EDGHSHILASTIPNCVSYDPAFAYEVAVIVQDGLRRMYGEQENVFYYITVM-NENYH-QPA-MPEGAEE---- 709 (891)
T ss_pred C------CchhhHHHHhhCCCCEEEeCCCHHHHHHHHHHHHHHHhhcCCCeEEEEEeC-CCCCC-CCC-CCccccc----
Confidence 2 22222347777543 345667888889999999987764444 8889986 21110 000 0000000
Q ss_pred CCCChhhHHHHHHHHHHHHHhcC-----CCEEEeCcccchhchHHHHHHHHHHhCCC
Q 007917 214 KVSNQLGLEAAVEATADFLNKAV-----KPVLVGGPNIRVAKAQKAFIELADATGYP 265 (585)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~l~~a~-----rpvIi~G~g~~~~~a~~~l~~lae~l~~P 265 (585)
.+-+....|...+ .-+.|+|.|..-..+.++...|++..|+-
T Consensus 710 ----------~igKg~y~Lr~g~~~~~~~dV~LlasG~~v~eAL~AAe~L~~~~GI~ 756 (891)
T PRK09405 710 ----------GILKGMYKLETAEGKKGKPKVQLLGSGTILREVLEAAEILAEDYGVA 756 (891)
T ss_pred ----------ccceEEEEeccCCCCCCCCCEEEEeccHHHHHHHHHHHHHhhhhCCC
Confidence 0111111122211 14888888887777888888888755544
No 370
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=50.91 E-value=12 Score=35.90 Aligned_cols=46 Identities=17% Similarity=0.324 Sum_probs=30.3
Q ss_pred HHHHHhhhCCEEEEeCCccCCccccccccc--CCCcceEEEcCCceee
Q 007917 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTV 340 (585)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~~~~~~ 340 (585)
.+.+.+.++|++|++|+++.-.....+-.. .++.++|.|+.++...
T Consensus 160 ~a~~~~~~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~ 207 (218)
T cd01407 160 EAAEALAKADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINLEPTPA 207 (218)
T ss_pred HHHHHHhcCCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECCCCCCC
Confidence 455677789999999998765433222211 1356788898887643
No 371
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=50.10 E-value=37 Score=29.81 Aligned_cols=97 Identities=11% Similarity=0.089 Sum_probs=58.0
Q ss_pred HHHHHHhhhcCCCcEEEEEcCchhH----hHHHH-HHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHhcC
Q 007917 446 GATLGYAQAAKDKRVIACIGDGSFQ----EISTM-IRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHN 520 (585)
Q Consensus 446 paAiGaalA~p~~~vv~v~GDGsf~----eL~ta-~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~ 520 (585)
+-+.|+.+|. +++.+.+.- .+.. .|... +-|++|+++++-.-+.+.-+ + +....-.--..++-+.++.
T Consensus 56 GIcAGa~lAG-kk~ailmQn-sGlGNsiNal~SL~~ty~iPl~ml~ShRG~~~E~--i---~AQVpmGr~~~kiLe~~~l 128 (172)
T COG4032 56 GICAGAYLAG-KKPAILMQN-SGLGNSINALASLYVTYKIPLLMLASHRGVLKEG--I---EAQVPMGRALPKILEGLEL 128 (172)
T ss_pred eeehhhhhcC-CCcEEEEec-cCcchHHHHHHHHHHHhccchhhhhhccchhhcC--C---ccccccchhhHHHHhhcCC
Confidence 3466888873 455555543 3333 55555 56999988877665555421 0 0001112346788999999
Q ss_pred CCCCccEEEecCHHHHHHHHHHhhh--cCCCCeEEE
Q 007917 521 GEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFI 554 (585)
Q Consensus 521 ~~~~~~~~~v~~~~eL~~al~~a~~--~~~~gp~vI 554 (585)
+.+++.+++|-.+.++.+.. .+..+|+.+
T Consensus 129 -----pt~t~~~p~Ea~~li~~~~~~a~~~s~pv~v 159 (172)
T COG4032 129 -----PTYTIIGPEEALPLIENAILDAFENSRPVAV 159 (172)
T ss_pred -----cccccCCHHHHHHHHHHHHHHHHHcCCceEE
Confidence 89999999985555554432 125666554
No 372
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.98 E-value=37 Score=31.94 Aligned_cols=48 Identities=29% Similarity=0.327 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEc
Q 007917 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (585)
Q Consensus 221 ~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t 269 (585)
..++++.++..|.-|++|+|=+-+.... -+.+++.+||+.+|+.+-..
T Consensus 55 A~eA~raAaA~LlLAk~PVISVNGN~AA-L~p~e~v~La~~~~aklEVN 102 (256)
T COG1701 55 ALEAIRAAAAALLLAKHPVISVNGNVAA-LVPEEVVELAEATGAKLEVN 102 (256)
T ss_pred HHHHHHHHHHHHHhccCCeEEEcCceee-eCcHHHHHHHHHhCCceEEE
Confidence 4567778888888899999988776653 47889999999999887653
No 373
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=49.97 E-value=1.3e+02 Score=31.49 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=36.0
Q ss_pred chHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCCc
Q 007917 443 WSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNGG 491 (585)
Q Consensus 443 ~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~~ 491 (585)
.++.+|+||+++ +.+++..+-=+||. .+..++-..+|+++++.+..+
T Consensus 59 aA~~~a~GAs~a--G~Ra~TaTSg~Gl~lm~E~~~~a~~~e~P~Viv~~~R~g 109 (376)
T PRK08659 59 ASMAAVIGASWA--GAKAMTATSGPGFSLMQENIGYAAMTETPCVIVNVQRGG 109 (376)
T ss_pred HHHHHHHhHHhh--CCCeEeecCCCcHHHHHHHHHHHHHcCCCEEEEEeecCC
Confidence 377899999987 55677776666665 566667778999999999775
No 374
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=49.50 E-value=30 Score=36.55 Aligned_cols=47 Identities=23% Similarity=0.257 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEc
Q 007917 223 AAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (585)
Q Consensus 223 ~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t 269 (585)
....+++.+|.+-.+-+.++.....|..|.++|+.|+++.++||+..
T Consensus 115 Tt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~ 161 (451)
T COG0541 115 TTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS 161 (451)
T ss_pred hHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecC
Confidence 34567788888876777777888888899999999999999999975
No 375
>cd02751 MopB_DMSOR-like The MopB_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. Members of the MopB_DMSOR-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=49.07 E-value=27 Score=39.24 Aligned_cols=120 Identities=16% Similarity=0.141 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHhcC----CCEEEe--Ccccch---hchHHHHHHHHHHhCCCeEEc-cCCccCCCCCCCCceeeecC
Q 007917 220 GLEAAVEATADFLNKAV----KPVLVG--GPNIRV---AKAQKAFIELADATGYPIAIM-PSGKGLVPEHHPHFIGTYWG 289 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~a~----rpvIi~--G~g~~~---~~a~~~l~~lae~l~~Pv~~t-~~gkg~~~~~hp~~~G~~~g 289 (585)
..+++++.+++.|++.+ .-.|+. |.+... ......+.+|+..+|.++... ..+-+.....++..+|.. .
T Consensus 77 SWDEAl~~iA~kl~~i~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~c~~~~~~~~~~~~G~~-~ 155 (609)
T cd02751 77 SWDEALDLVASELKRIREKYGNEAIFGGSYGWASAGRLHHAQSLLHRFLNLIGGYLGSYGTYSTGAAQVILPHVVGSD-E 155 (609)
T ss_pred cHHHHHHHHHHHHHHHHHHhCcceeecccCCcccccccccchHHHHHHHHhcCCCcCCCCCccHHHHHhHhhhEEccc-h
Confidence 35778888888876532 123332 222211 123456778888777543211 000000001122333321 0
Q ss_pred CC-CCHHHHHHhhhCCEEEEeCCccCCcccccc---------c---ccCCCcceEEEcCCceee
Q 007917 290 AV-SSSFCGEIVESADAYVFVGPIFNDYSSVGY---------S---LLIKKEKAIIVQPHRVTV 340 (585)
Q Consensus 290 ~~-~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~---------~---~~~~~~~~i~id~~~~~~ 340 (585)
.. ......++..+||+||++|+...+.....| . ...++.++|.||+.....
T Consensus 156 ~~~~~~~~~D~~~~ad~il~wG~N~~~~~~~~~~~~~~~~~~~~~~a~~~GakiivIDPr~s~t 219 (609)
T cd02751 156 VYEQGTSWDDIAEHSDLVVLFGANPLKTRQGGGGGPDHGSYYYLKQAKDAGVRFICIDPRYTDT 219 (609)
T ss_pred hccCCCChhhHHhcCCEEEEECCCHHHhcCCCCCccCcchHHHHHHHHHCCCeEEEECCCCCcc
Confidence 00 011123333459999999988654433222 1 112456899999876543
No 376
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=49.02 E-value=95 Score=32.79 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCcccchh----chHHHHHHHHHHhC
Q 007917 222 EAAVEATADFLNKAVKPVLVGGPNIRVA----KAQKAFIELADATG 263 (585)
Q Consensus 222 ~~~~~~~~~~l~~a~rpvIi~G~g~~~~----~a~~~l~~lae~l~ 263 (585)
.+.+++++++|.++++++|+.|.|.... .....+..++..++
T Consensus 222 ~~~i~~lA~~l~~a~~~~i~~g~g~~~~~~~~~~~~~~~~li~~l~ 267 (415)
T cd02761 222 AETILELAERLKNAKFGVIFWGLGLLPSRGAHRNIEAAIRLVKALN 267 (415)
T ss_pred HHHHHHHHHHHHhCCceEEEEeccccccCCccHHHHHHHHHHHHhC
Confidence 4578899999999999999999888632 34455666666664
No 377
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=48.74 E-value=41 Score=38.79 Aligned_cols=111 Identities=17% Similarity=0.117 Sum_probs=67.1
Q ss_pred ccccchHHHHHHHhhhcC-------CCcEE--EEEcCchhH------hHHHHHH---hCC-CeEEEEEeCCce-eeeeee
Q 007917 439 GSIGWSVGATLGYAQAAK-------DKRVI--ACIGDGSFQ------EISTMIR---CGQ-RSIIFLINNGGY-TIEVEI 498 (585)
Q Consensus 439 g~mG~~lpaAiGaalA~p-------~~~vv--~v~GDGsf~------eL~ta~~---~~l-pv~ivV~NN~~~-~~~~~~ 498 (585)
+-+-.--|--.|..-|.- ..+|+ .+-||-+|. |.....+ |.. +.+.||+||... ...
T Consensus 298 SHLE~v~PVV~G~vRa~Qd~~~d~~~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTs--- 374 (906)
T COG0567 298 SHLEIVNPVVEGSVRAKQDRLGDTERDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTS--- 374 (906)
T ss_pred chhhhhchhhhcchHhhhhhhccCccceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCC---
Confidence 344444566666665532 12344 899999998 4333333 333 467788888843 321
Q ss_pred cCCCCCCCCCCCHHHHHHHhcCCCCCccEEEe--cCHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007917 499 HDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKV--RSEDELTEAMKTATG--EQKDSLCFIEVFVHK 560 (585)
Q Consensus 499 ~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v--~~~~eL~~al~~a~~--~~~~gp~vIeV~v~~ 560 (585)
+...-..+--..+|+++++ +.+.| ++++....+.+-|.+ ...+++++||+.+-+
T Consensus 375 ---p~~sRSt~Y~TDvAKm~~a-----PifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvcYR 432 (906)
T COG0567 375 ---PADARSTPYCTDVAKMIEA-----PIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYR 432 (906)
T ss_pred ---cccccCCCCCCChhhccCC-----ceeecccCCchhhhhhHHHHHHHHhhcCCCeeeecccCC
Confidence 0000012233557778887 67776 577777677777766 456789999999875
No 378
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=48.41 E-value=99 Score=27.07 Aligned_cols=97 Identities=20% Similarity=0.171 Sum_probs=55.0
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChH--HHHHhhhc----C-CCCeEEecCchhh--HHHhh----hhhhhh-----
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNL--TLLDHLIA----E-PELNLVGCCNELN--AGYAA----DGYARS----- 87 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~--~l~~al~~----~-~~i~~i~~~~E~~--A~~~A----~gyar~----- 87 (585)
....++.+++.+.+-|.=++||.=|+... ++...+.. . +.++.+ +.+... +.... .+|++.
T Consensus 21 i~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (138)
T PF13580_consen 21 IEKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAI-ALNDDALTAISNDLEYDEGFARQLLALY 99 (138)
T ss_dssp HHHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEE-ETTSTHHHHHHHHTTGGGTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCccccccc-ccccchHhhhhcccchhhHHHHHHHHHc
Confidence 45678999999999999999999666433 22222221 1 123333 344432 21111 355442
Q ss_pred cCc-c-EEEEeCCc-chHHHHHHHHHhhhcCCcEEEEeC
Q 007917 88 RGV-G-ACVVTFTV-GGLSVLNAIAGAYSENLPVICIVG 123 (585)
Q Consensus 88 tg~-~-v~~~t~Gp-G~~n~~~gl~~A~~~~~Pll~I~g 123 (585)
..+ + ++++.|.. -..|.+.++..|+.-+.++|.|||
T Consensus 100 ~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 100 DIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp T--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 132 2 44443333 367899999999999999999986
No 379
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=48.09 E-value=31 Score=40.13 Aligned_cols=112 Identities=21% Similarity=0.142 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEe-CcccchhchHHHHHHHHH-HhCCCeEEccCCccCCCCCC----CCceeeecCCCCC
Q 007917 220 GLEAAVEATADFLNKAVKPVLVG-GPNIRVAKAQKAFIELAD-ATGYPIAIMPSGKGLVPEHH----PHFIGTYWGAVSS 293 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~a~rpvIi~-G~g~~~~~a~~~l~~lae-~l~~Pv~~t~~gkg~~~~~h----p~~~G~~~g~~~~ 293 (585)
..+++++.+++.|++.+..+-+. |..... +..-.+.+|+. .+|.+-+... ++..-+... +...|. ...
T Consensus 295 SWdEAld~ia~kL~~i~~~ia~~~s~~~t~-Ee~y~~~kl~r~~lgt~nid~~-~r~~~~~~~~~~~~~~~g~---~~~- 368 (797)
T PRK07860 295 SWSEALAVAARGLAAARGRVGVLVGGRLTV-EDAYAYAKFARVALGTNDIDFR-ARPHSAEEADFLAARVAGR---GLG- 368 (797)
T ss_pred CHHHHHHHHHHHHHhhhccEEEEeCCCCCH-HHHHHHHHHHHHhcCCCccccc-cccccchHHHHHHhhccCC---CCC-
Confidence 45778888899888776544444 433332 22234567776 4665544211 110000000 111111 011
Q ss_pred HHHHHHhhhCCEEEEeCCccCCccccc-ccc--c--CCCcceEEEcCCce
Q 007917 294 SFCGEIVESADAYVFVGPIFNDYSSVG-YSL--L--IKKEKAIIVQPHRV 338 (585)
Q Consensus 294 ~~~~~~l~~aD~vl~lG~~~~~~~~~~-~~~--~--~~~~~~i~id~~~~ 338 (585)
...+-++++|+||++|+...+..... +.. . ..+.++|.||+...
T Consensus 369 -~~~~Die~ad~ill~G~N~~~~~P~~~~ri~~a~k~~GakiivIDPr~t 417 (797)
T PRK07860 369 -VTYADLEKAPAVLLVGFEPEEESPIVFLRLRKAARKHGLKVYSIAPFAT 417 (797)
T ss_pred -CCHHHHHhCCEEEEEeCChhhhhHHHHHHHHHHHHhCCCEEEEECCCCc
Confidence 11234679999999998765533211 111 1 23568999998554
No 380
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=47.96 E-value=1.2e+02 Score=31.95 Aligned_cols=99 Identities=16% Similarity=0.284 Sum_probs=65.1
Q ss_pred HHHHHhhhcCCCc--EEEEEcCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCC-CCCCCHHHHHHHhcC
Q 007917 447 ATLGYAQAAKDKR--VIACIGDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNV-IKNWDYTGLVNAIHN 520 (585)
Q Consensus 447 aAiGaalA~p~~~--vv~v~GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~-~~~~d~~~la~a~G~ 520 (585)
+|=|.+-+. ++| |++-.|-|+.. -|..|.--++|++++--.=-.-. ..++ +..-|...+.+++--
T Consensus 144 aAegYaR~s-gKPGvvlvTSGPGATNvvtp~ADAlaDg~PlVvftGQVptsa--------IGtDAFQEadiVgisRScTK 214 (675)
T KOG4166|consen 144 AAEGYARSS-GKPGVVLVTSGPGATNVVTPLADALADGVPLVVFTGQVPTSA--------IGTDAFQEADIVGISRSCTK 214 (675)
T ss_pred hhhhhhhhc-CCCcEEEEecCCCcccccchhhHHhhcCCcEEEEecccchhh--------cccchhccCCeeeeeeccce
Confidence 466666553 344 44455777777 88888889999876531111111 1121 244566777777764
Q ss_pred CCCCccEEEecCHHHHHHHHHHhhh-cC--CCCeEEEEEEcC
Q 007917 521 GEGKCWTAKVRSEDELTEAMKTATG-EQ--KDSLCFIEVFVH 559 (585)
Q Consensus 521 ~~~~~~~~~v~~~~eL~~al~~a~~-~~--~~gp~vIeV~v~ 559 (585)
+-+-|.+.+||..-+++|++ .. +.||+|+|+.-|
T Consensus 215 -----wNvmVkdVedlPrrI~EAFeiATSGRPGPVLVDlPKD 251 (675)
T KOG4166|consen 215 -----WNVMVKDVEDLPRRIEEAFEIATSGRPGPVLVDLPKD 251 (675)
T ss_pred -----eheeeecHHHhhHHHHHHhhhhccCCCCCeEeeCcHH
Confidence 66778999999999999987 32 468999998755
No 381
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=47.71 E-value=33 Score=28.40 Aligned_cols=32 Identities=13% Similarity=0.106 Sum_probs=26.8
Q ss_pred CCEEEeCcccchhchHHHHHHHHHHhCCCeEE
Q 007917 237 KPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (585)
Q Consensus 237 rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~ 268 (585)
|.++++|+|+..+-..+.++++++..|+++-.
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~~i 33 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPLEA 33 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 35788999987777899999999999988654
No 382
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=47.69 E-value=28 Score=27.75 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=36.5
Q ss_pred CCEEEeCcccchhchH-HHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEe
Q 007917 237 KPVLVGGPNIRVAKAQ-KAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFV 309 (585)
Q Consensus 237 rpvIi~G~g~~~~~a~-~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~l 309 (585)
|.++++|.|...+-.. ..+++.++..|+.+..+.... ........++|+||.-
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~~--------------------~~~~~~~~~~D~il~~ 54 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGSI--------------------LEVEEIADDADLILLT 54 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEET--------------------TTHHHHHTT-SEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEecc--------------------cccccccCCCcEEEEc
Confidence 3588999999887655 999999999997766532210 1234455679999774
No 383
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=47.59 E-value=1.4e+02 Score=31.03 Aligned_cols=39 Identities=5% Similarity=0.082 Sum_probs=29.8
Q ss_pred CHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEE
Q 007917 510 DYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFI 554 (585)
Q Consensus 510 d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vI 554 (585)
.|..+.+++-. +..+...++.|++.+++.+++ .++|++|
T Consensus 163 ~~ea~lr~iPn----~~V~~Psd~~e~~~~l~~a~~--~~~P~~i 201 (355)
T PTZ00182 163 SFEAYFAHVPG----LKVVAPSDPEDAKGLLKAAIR--DPNPVVF 201 (355)
T ss_pred hHHHHHhcCCC----CEEEeeCCHHHHHHHHHHHHh--CCCcEEE
Confidence 44566666522 377778899999999999996 6899987
No 384
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=47.26 E-value=2.3e+02 Score=30.59 Aligned_cols=134 Identities=13% Similarity=0.121 Sum_probs=76.4
Q ss_pred CcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhh-hceeEEEEecCcchhHHHHHHHH
Q 007917 98 TVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQ-AITCSQAVVNNLGDAHELIDTAI 176 (585)
Q Consensus 98 GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~k~~~~v~~~~~~~~~l~~A~ 176 (585)
|-....++.-+..-. ..+|+|+|||..... ..+..++ ...-|-...-+++++...+++|+
T Consensus 60 ~~~Gl~ll~~i~~~~-~~~pVI~~Tg~g~i~------------------~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral 120 (464)
T COG2204 60 GMDGLELLKEIKSRD-PDLPVIVMTGHGDID------------------TAVEALRLGAFDFLEKPFDLDRLLAIVERAL 120 (464)
T ss_pred CCchHHHHHHHHhhC-CCCCEEEEeCCCCHH------------------HHHHHHhcCcceeeeCCCCHHHHHHHHHHHH
Confidence 444456666666655 889999999964322 1122221 22233333346788899999999
Q ss_pred HHhhhcC--CcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccch-hchHH
Q 007917 177 STALKES--KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRV-AKAQK 253 (585)
Q Consensus 177 ~~a~~~~--gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~-~~a~~ 253 (585)
....... .. ..+..- ... ... + ...+.-..+.+.+..+..+.-||+|.|.-... .-...
T Consensus 121 ~~~~~~~e~~~---~~~~~~-----~~~----~~l-i-----G~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr 182 (464)
T COG2204 121 ELRELQRENRR---SLKRAK-----SLG----GEL-V-----GESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVAR 182 (464)
T ss_pred HHhhhhhhhhh---hhhccc-----ccc----CCc-e-----ecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHH
Confidence 8765421 11 111100 000 000 0 01223456777778888899999999965432 22455
Q ss_pred HHHHHHHHhCCCeEE
Q 007917 254 AFIELADATGYPIAI 268 (585)
Q Consensus 254 ~l~~lae~l~~Pv~~ 268 (585)
.|.+++.+.+-|+++
T Consensus 183 ~IH~~S~R~~~PFVa 197 (464)
T COG2204 183 AIHQASPRAKGPFIA 197 (464)
T ss_pred HHHhhCcccCCCcee
Confidence 666677777778887
No 385
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=45.96 E-value=1.4e+02 Score=30.64 Aligned_cols=40 Identities=5% Similarity=0.022 Sum_probs=29.2
Q ss_pred CHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEE
Q 007917 510 DYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIE 555 (585)
Q Consensus 510 d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIe 555 (585)
.+..+.+.+-. ++.+...++.|++..|+.+++ .++|++|-
T Consensus 132 ~~ea~~~~iPg----l~V~~Psd~~d~~~~l~~a~~--~~~Pv~ir 171 (327)
T CHL00144 132 RLESYFQSVPG----LQIVACSTPYNAKGLLKSAIR--SNNPVIFF 171 (327)
T ss_pred cHHHHHhcCCC----CEEEEeCCHHHHHHHHHHHHh--CCCcEEEE
Confidence 45555555422 356667899999999999986 68999884
No 386
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=45.28 E-value=21 Score=37.33 Aligned_cols=75 Identities=15% Similarity=0.288 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhh--h
Q 007917 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVE--S 302 (585)
Q Consensus 225 ~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~--~ 302 (585)
++++.+.+.+-+|++||.|......+..+.+....++.++.+..-.. + ..+|-.-.+ ..+.+.++ +
T Consensus 11 l~~l~~~l~~~gr~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~----~-~~~p~~~~v-------~~~~~~~~~~~ 78 (366)
T PF00465_consen 11 LEELGEELKRLGRVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDG----V-GPNPTLEDV-------DEAAEQARKFG 78 (366)
T ss_dssp GGGHHHHHHCTTEEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEE----E-SSS-BHHHH-------HHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCEEEEECchHHhCccHHHHHHHHhhCceEEEEEec----C-CCCCcHHHH-------HHHHHHHHhcC
Confidence 44555666665699999998555555778888777888887754110 0 122222111 12223333 7
Q ss_pred CCEEEEeCC
Q 007917 303 ADAYVFVGP 311 (585)
Q Consensus 303 aD~vl~lG~ 311 (585)
+|+||.||-
T Consensus 79 ~D~IIaiGG 87 (366)
T PF00465_consen 79 ADCIIAIGG 87 (366)
T ss_dssp SSEEEEEES
T ss_pred CCEEEEcCC
Confidence 999999984
No 387
>PF00766 ETF_alpha: Electron transfer flavoprotein FAD-binding domain; InterPro: IPR014731 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the C-terminal domain of the alpha subunit of both Group I and Group II ETFs.; PDB: 1O96_D 3CLR_D 1O97_D 3CLT_D 3CLU_D 3CLS_D 2A1U_A 2A1T_R 1EFV_A 1EFP_C ....
Probab=44.94 E-value=23 Score=28.46 Aligned_cols=64 Identities=22% Similarity=0.361 Sum_probs=39.7
Q ss_pred CCEEEeCcccchhchHHHHHHHHHHhCCCeEEccC--CccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCc
Q 007917 237 KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPI 312 (585)
Q Consensus 237 rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~--gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~ 312 (585)
+-|+-+|.|....+..+.+++||+.+|+-|-+|-. -.|.+|.+ ..+|. .|. .-.+++.|.+|-+
T Consensus 8 ~~VV~~GrG~~~~e~~~l~~~LA~~lga~vg~SRp~vd~gw~p~~--~qIG~----sG~------~v~P~lyia~GIS 73 (86)
T PF00766_consen 8 EVVVAGGRGVGSKENFELIEELAEALGAAVGASRPVVDAGWIPRE--RQIGQ----SGK------TVAPKLYIAFGIS 73 (86)
T ss_dssp SEEEEE-GGG-STGGCHHHHHHHHHHT-EEEE-HHHHHTTSS-GG--GBBST----TSB--------T-SEEEEES--
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHHHhCCchhccHHHHhCCCCchh--hhcCC----CCc------EEeeeeeEeecch
Confidence 34677888888777889999999999999998743 35677654 34444 222 1268899999864
No 388
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=44.35 E-value=1.7e+02 Score=26.64 Aligned_cols=102 Identities=20% Similarity=0.175 Sum_probs=56.1
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHh--hhc-----CCCCeEEecC---chhhHHHhhhhhh---------hh
Q 007917 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDH--LIA-----EPELNLVGCC---NELNAGYAADGYA---------RS 87 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~a--l~~-----~~~i~~i~~~---~E~~A~~~A~gya---------r~ 87 (585)
...++.|++.+.+.+-=++||+-++......-+ |.. ..++..+... +|..+..--.+|. ..
T Consensus 20 ~~a~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (177)
T cd05006 20 EQAAQLLAEALLNGGKILICGNGGSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEEVFSRQVEALG 99 (177)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhchhccCCCCCceEeccCCHHHHHHHhccCCHHHHHHHHHHHhC
Confidence 345666666666666667777755543332211 221 1245554433 2322221112222 12
Q ss_pred cCccEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCCCCc
Q 007917 88 RGVGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNSN 128 (585)
Q Consensus 88 tg~~v~~~t~GpG-~~n~~~gl~~A~~~~~Pll~I~g~~~~~ 128 (585)
+..-++++.|-.| ..+.+..+..|...++|+|.||+.....
T Consensus 100 ~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~ 141 (177)
T cd05006 100 QPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGK 141 (177)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 3334555545445 4579999999999999999999975443
No 389
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=44.12 E-value=64 Score=32.59 Aligned_cols=102 Identities=16% Similarity=-0.016 Sum_probs=61.0
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCC-------CCeEEecCchhhHH------------Hhhhhhhh-
Q 007917 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEP-------ELNLVGCCNELNAG------------YAADGYAR- 86 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~-------~i~~i~~~~E~~A~------------~~A~gyar- 86 (585)
-..++.+++.|++.|-=++||.=++.....+|+....+ .+..+..-.+.+.. +..+=.+.
T Consensus 45 ~~a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf~~~~~~~~~~iagg~~a~~~a~~~~ed~~~~~~~~l~a~~ 124 (296)
T PRK12570 45 AQAVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSVSPEMVIGLIAGGPEAMFTAVEGAEDDPELGAQDLKAIG 124 (296)
T ss_pred HHHHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchhcCCcccceeeeecCchHhhhcccccCCcHHHHHHHHHHcC
Confidence 34567788899999888888887777777777654311 12222222221111 11111111
Q ss_pred hcCccEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCCCCc
Q 007917 87 SRGVGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNSN 128 (585)
Q Consensus 87 ~tg~~v~~~t~GpG-~~n~~~gl~~A~~~~~Pll~I~g~~~~~ 128 (585)
.+..-+++..+..| .-+.+.++..|...+.++|.||+.....
T Consensus 125 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~ 167 (296)
T PRK12570 125 LTADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSP 167 (296)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 12234555555555 4458888889999999999999976554
No 390
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=44.11 E-value=2.1e+02 Score=32.01 Aligned_cols=157 Identities=13% Similarity=-0.027 Sum_probs=96.6
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecC---CCChHHHHHhhh----cCCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeC
Q 007917 25 SVGTLGRHLARRLVEIGAKDVFSVP---GDFNLTLLDHLI----AEPELNLVGCCNELNAGYAADGYARSRGVGACVVTF 97 (585)
Q Consensus 25 ~~~~~a~~i~~~L~~~Gv~~vFg~P---G~~~~~l~~al~----~~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~ 97 (585)
.++..+.-..+.|...--..+-|.. ++..+.+-+... +..+=.+.....|.+.+.++-|.+.-.|.-..-.|-
T Consensus 355 ATR~as~~~L~~l~~~~p~l~GGSADLa~Sn~T~~~~~~~~~~~~~~gr~i~~GVREf~M~AimNGialhGg~~pyggTF 434 (663)
T COG0021 355 ATRKASGKALNALAKKLPELIGGSADLAPSNLTKISGSGDFSPENYAGRYIHFGVREFAMAAIMNGIALHGGFIPYGGTF 434 (663)
T ss_pred chHHHHHHHHHHHHhhCccccccCcccccCccccccccCCCCCCCCCCCeeEEeeHHHHHHHHHHhHHHhcCceeeccee
Confidence 3456667777777766455444432 233333322211 111334456778999999999999877721111121
Q ss_pred CcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEE-EEecCcchhHHHHHHHH
Q 007917 98 TVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDTAI 176 (585)
Q Consensus 98 GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~l~~A~ 176 (585)
-.=.--+-+++-=|...++|++.+-.......-..++ +||-.+|+..+|.+.-.. .+..+. .....|+
T Consensus 435 lvFsdY~r~AiRlaALm~l~~~~V~THDSIgvGEDGP-------THqPiEqLa~LRaiPN~~V~RPaD~----~Et~~aw 503 (663)
T COG0021 435 LVFSDYARPAVRLAALMGLPVIYVFTHDSIGVGEDGP-------THQPVEQLASLRAIPNLSVIRPADA----NETAAAW 503 (663)
T ss_pred hhhHhhhhHHHHHHHhcCCCeEEEEecCceecCCCCC-------CCCcHHHHHHhhccCCceeEecCCh----HHHHHHH
Confidence 2223357888888999999999888765554222222 356778999999876433 333343 3356788
Q ss_pred HHhhhc-CCcEEEEecC
Q 007917 177 STALKE-SKPVYISISC 192 (585)
Q Consensus 177 ~~a~~~-~gPV~i~iP~ 192 (585)
+.|... .||..|.+.+
T Consensus 504 ~~Al~~~~gPt~LiltR 520 (663)
T COG0021 504 KYALERKDGPTALILTR 520 (663)
T ss_pred HHHHhcCCCCeEEEEec
Confidence 888875 7999999874
No 391
>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=44.05 E-value=22 Score=39.54 Aligned_cols=115 Identities=16% Similarity=0.172 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHhc------CCCEEEeCcccchhchHHHHHHHHHH-hCCCeEEccCCccCCCCC---CCCceeeecC
Q 007917 220 GLEAAVEATADFLNKA------VKPVLVGGPNIRVAKAQKAFIELADA-TGYPIAIMPSGKGLVPEH---HPHFIGTYWG 289 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~a------~rpvIi~G~g~~~~~a~~~l~~lae~-l~~Pv~~t~~gkg~~~~~---hp~~~G~~~g 289 (585)
..+++++.+++.|++. +...++.|+... ......+.+|+.. +|.+.+.+.. .-..... ....+|. +
T Consensus 71 SWdeAl~~ia~kl~~i~~~~G~~~i~~~~~~~~~-~e~~~~~~~l~~~~~gs~~~~~~~-~~c~~~~~~~~~~~~G~--~ 146 (565)
T cd02754 71 SWDEALDLIAERFKAIQAEYGPDSVAFYGSGQLL-TEEYYAANKLAKGGLGTNNIDTNS-RLCMASAVAGYKRSFGA--D 146 (565)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCcc-HHHHHHHHHHHHHhCCCCcccCCC-cccchHHHHHHHhhccC--C
Confidence 4577888888888753 234444443322 1233456677753 6666543211 1000000 0011121 0
Q ss_pred CCCCHHHHHHhhhCCEEEEeCCccCCcccccccc----cCC--CcceEEEcCCceee
Q 007917 290 AVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSL----LIK--KEKAIIVQPHRVTV 340 (585)
Q Consensus 290 ~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~--~~~~i~id~~~~~~ 340 (585)
... ....-+.++|+||++|+.+.+.....+.. ... +.++|.||+.....
T Consensus 147 ~~~--~~~~Di~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP~~t~t 201 (565)
T cd02754 147 GPP--GSYDDIEHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDPRRTRT 201 (565)
T ss_pred CCC--CCHHHHhhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcCCCCcc
Confidence 111 11233579999999999865443222211 112 67899999876543
No 392
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=43.87 E-value=42 Score=34.84 Aligned_cols=46 Identities=22% Similarity=0.262 Sum_probs=38.5
Q ss_pred chHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCC
Q 007917 443 WSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNG 490 (585)
Q Consensus 443 ~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~ 490 (585)
.++.+|+||+++ +.+++..+-|.+|. .|.-+.-..+|+++++.+=.
T Consensus 59 aA~~~a~GAs~a--G~Ra~taTSg~Gl~lm~E~l~~a~~~e~P~v~v~v~R~ 108 (352)
T PRK07119 59 AAINMVYGAAAT--GKRVMTSSSSPGISLKQEGISYLAGAELPCVIVNIMRG 108 (352)
T ss_pred HHHHHHHHHHhh--CCCEEeecCcchHHHHHHHHHHHHHccCCEEEEEeccC
Confidence 367899999997 67899999999998 67777888999999888744
No 393
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=43.83 E-value=1e+02 Score=31.18 Aligned_cols=101 Identities=21% Similarity=0.022 Sum_probs=60.0
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCC-------CCeEEecCchhhHHH------------hhhhhhh-h
Q 007917 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEP-------ELNLVGCCNELNAGY------------AADGYAR-S 87 (585)
Q Consensus 28 ~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~-------~i~~i~~~~E~~A~~------------~A~gyar-~ 87 (585)
...+.+++.|++.|-=++||.=++....++|+.+..+ .+..+..-.+.+... ..+=.+. .
T Consensus 50 ~av~~~~~~l~~ggrI~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~iiagG~~a~~~a~e~~ed~~~~~~~~l~~~~l 129 (299)
T PRK05441 50 AAVDAAAAALRQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVEGAEDDAELGAADLKAINL 129 (299)
T ss_pred HHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhCcCccCCCchhceeeecCCcHHHHhcccccCChHHHHHHHHHhcCC
Confidence 3456778888888887888887777777777664322 122222222211111 1111111 2
Q ss_pred cCccEEEEeCCcchH-HHHHHHHHhhhcCCcEEEEeCCCCCc
Q 007917 88 RGVGACVVTFTVGGL-SVLNAIAGAYSENLPVICIVGGPNSN 128 (585)
Q Consensus 88 tg~~v~~~t~GpG~~-n~~~gl~~A~~~~~Pll~I~g~~~~~ 128 (585)
+..-+++..|..|-+ +.+.++..|...+.++|.||+.+...
T Consensus 130 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~ 171 (299)
T PRK05441 130 TAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSP 171 (299)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 333455555566644 48888888999999999999876544
No 394
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=43.72 E-value=68 Score=26.24 Aligned_cols=59 Identities=19% Similarity=0.209 Sum_probs=39.0
Q ss_pred EEeCcccchh-chHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCcc
Q 007917 240 LVGGPNIRVA-KAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIF 313 (585)
Q Consensus 240 Ii~G~g~~~~-~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~ 313 (585)
+-+|.|...+ -+.+.|++.++..|+.+-....+..-+. . ....+.+.++|+||.+|...
T Consensus 5 ~ac~~G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~-----------~----~l~~~~i~~Ad~vi~~~~~~ 64 (96)
T cd05569 5 TACPTGIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIE-----------N----ELTAEDIAEADAVILAADVP 64 (96)
T ss_pred EECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecCcCcc-----------C----cCCHHHHhhCCEEEEecCCC
Confidence 4456666544 4678999999999999886655441110 0 11225678999999999653
No 395
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=43.01 E-value=71 Score=26.05 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=33.9
Q ss_pred EEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHH--HHHHhhhCCEEEEe
Q 007917 239 VLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSF--CGEIVESADAYVFV 309 (585)
Q Consensus 239 vIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~--~~~~l~~aD~vl~l 309 (585)
++|+|+-.. -...+++++++.|.-+..= |+ .+...... ....+.++|+||++
T Consensus 2 vliVGG~~~---~~~~~~~~~~~~G~~~~~h--g~--------------~~~~~~~~~~l~~~i~~aD~VIv~ 55 (97)
T PF10087_consen 2 VLIVGGRED---RERRYKRILEKYGGKLIHH--GR--------------DGGDEKKASRLPSKIKKADLVIVF 55 (97)
T ss_pred EEEEcCCcc---cHHHHHHHHHHcCCEEEEE--ec--------------CCCCccchhHHHHhcCCCCEEEEE
Confidence 567776333 4578899999999876653 21 11112222 56788999999998
No 396
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=42.91 E-value=2.4e+02 Score=24.90 Aligned_cols=95 Identities=14% Similarity=0.082 Sum_probs=64.5
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecC--chhhHHHhhhhhhhhcCc-cEEEEeCCcc--h
Q 007917 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCC--NELNAGYAADGYARSRGV-GACVVTFTVG--G 101 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~--~E~~A~~~A~gyar~tg~-~v~~~t~GpG--~ 101 (585)
.+.-+.+++.|.+.|++.|+.+.+. ..+...+.+ .+++++... +...+..+..|....... .++++.+.-- -
T Consensus 24 ~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~-~~~~~v~~~~~~~G~~~sl~~a~~~~~~~~~vlv~~~D~p~~~ 100 (160)
T PF12804_consen 24 KPLIERVLEALREAGVDDIVVVTGE--EEIYEYLER-YGIKVVVDPEPGQGPLASLLAALSQLPSSEPVLVLPCDQPFLS 100 (160)
T ss_dssp EEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTT-TTSEEEE-STSSCSHHHHHHHHHHTSTTSSEEEEEETTETTS-
T ss_pred ccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhc-cCceEEEeccccCChHHHHHHHHHhcccCCCcEEEeCCccccC
Confidence 3567899999999999999999888 356666654 468998887 345555556666665343 7777777653 3
Q ss_pred HHHHHHHHHhhh-cCCcEEEEeCC
Q 007917 102 LSVLNAIAGAYS-ENLPVICIVGG 124 (585)
Q Consensus 102 ~n~~~gl~~A~~-~~~Pll~I~g~ 124 (585)
.+.+..+.+++. +..++++.+-.
T Consensus 101 ~~~l~~l~~~~~~~~~~i~~~~~~ 124 (160)
T PF12804_consen 101 PELLRRLLEALEKSPADIVVPVFR 124 (160)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEET
T ss_pred HHHHHHHHHHHhccCCcEEEEEEC
Confidence 567888888876 35556555543
No 397
>PRK09330 cell division protein FtsZ; Validated
Probab=42.71 E-value=61 Score=33.99 Aligned_cols=82 Identities=16% Similarity=0.125 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCcc-cchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCce-eeecCCCCCHHHHH
Q 007917 221 LEAAVEATADFLNKAVKPVLVGGPN-IRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFI-GTYWGAVSSSFCGE 298 (585)
Q Consensus 221 ~~~~~~~~~~~l~~a~rpvIi~G~g-~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~-G~~~g~~~~~~~~~ 298 (585)
.++..+++.+.|..+....|++|-| ...+++...+.++++.++++++.-.. .|+.. |...-........+
T Consensus 84 aee~~e~I~~~l~~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt--------~PF~fEG~~r~~nA~~gL~~ 155 (384)
T PRK09330 84 AEESREEIREALEGADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVT--------KPFSFEGKKRMKQAEEGIEE 155 (384)
T ss_pred HHHHHHHHHHHHcCCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEe--------cCccccchhHHHHHHHHHHH
Confidence 3455667777788888888888844 44467888999999999987665221 12211 10000001123445
Q ss_pred HhhhCCEEEEeC
Q 007917 299 IVESADAYVFVG 310 (585)
Q Consensus 299 ~l~~aD~vl~lG 310 (585)
+.+.+|.+|+|-
T Consensus 156 L~~~~D~vIvi~ 167 (384)
T PRK09330 156 LRKHVDTLIVIP 167 (384)
T ss_pred HHHHCCEEEEEe
Confidence 667899999983
No 398
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=42.65 E-value=77 Score=33.35 Aligned_cols=43 Identities=2% Similarity=0.030 Sum_probs=30.2
Q ss_pred HHHHHHHHHHh--cCCCEEEeCcccchhchHHHHHHHHHHhCCCe
Q 007917 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (585)
Q Consensus 224 ~~~~~~~~l~~--a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv 266 (585)
.++++.+.+.+ .+|++|+.|......+..+.+.+..+..++.+
T Consensus 18 ~~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~ 62 (383)
T PRK09860 18 SLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFS 62 (383)
T ss_pred HHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeE
Confidence 34555555554 47889888887766667778888778778754
No 399
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=42.45 E-value=96 Score=32.46 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=29.7
Q ss_pred HHHHHHHHHh--cCCCEEEeCcccchhchHHHHHHHHHHhCCCeE
Q 007917 225 VEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (585)
Q Consensus 225 ~~~~~~~l~~--a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~ 267 (585)
++++.+.+.+ .+|++|+.|......+..+.+.+..++.++.+.
T Consensus 14 l~~l~~~l~~~~~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~ 58 (376)
T cd08193 14 LARLGELLAALGAKRVLVVTDPGILKAGLIDPLLASLEAAGIEVT 58 (376)
T ss_pred HHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEE
Confidence 4555555554 589999998876655567778877777776553
No 400
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=40.98 E-value=88 Score=31.52 Aligned_cols=101 Identities=17% Similarity=0.055 Sum_probs=57.2
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCC--CC-----eEEecCch------------hh-HHHhhhhhhhh
Q 007917 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEP--EL-----NLVGCCNE------------LN-AGYAADGYARS 87 (585)
Q Consensus 28 ~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~--~i-----~~i~~~~E------------~~-A~~~A~gyar~ 87 (585)
...+.+++.|++.|-=++||.=++....+.|+.+..+ +. +.+..-.+ .. ++.........
T Consensus 45 ~av~~~~~~l~~gGrl~~~G~G~Sg~l~~~DA~e~~~t~g~~~~~~~~~iaGg~~a~~~~~e~~Ed~~~~~~~dl~~~~l 124 (291)
T TIGR00274 45 AAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSPELVKGIIAGGECAILHAVEGAEDSTEAGANDLQNIHL 124 (291)
T ss_pred HHHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhhhcCCCHHHhhHHhcCChHHHhccchhhhcchHHHHHHHHhcCC
Confidence 4567778899888878888887776666777643221 11 11111111 11 11111122223
Q ss_pred cCccEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCCCCc
Q 007917 88 RGVGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNSN 128 (585)
Q Consensus 88 tg~~v~~~t~GpG-~~n~~~gl~~A~~~~~Pll~I~g~~~~~ 128 (585)
+-.=++++.+..| ..+.+.++..|...+.|+|.||+.+...
T Consensus 125 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~ 166 (291)
T TIGR00274 125 TKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSA 166 (291)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCh
Confidence 3233333333334 4558888889999999999999865443
No 401
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=40.62 E-value=39 Score=33.16 Aligned_cols=66 Identities=18% Similarity=0.222 Sum_probs=38.4
Q ss_pred HHHHHhhhCCEEEEeCCccCCcccccccc--cCCCcceEEEcCCceeecCCCccc---cccHHHHHHHHHHHh
Q 007917 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGNGPSLG---WVFMADFLSALAKKL 362 (585)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~~~~~~~~~~~~~---~~~~~~~l~~L~~~l 362 (585)
.+.+.++++|++|++|+++.-+.-..+.. ...+.++|.|+..+..+. .... ..++..++..|.+.+
T Consensus 175 ~~~~~~~~~d~liviGTSl~V~Paa~~p~~~~~~g~~~i~iN~~~~~~~--~~~d~~i~~~a~~~~~~l~~~~ 245 (250)
T COG0846 175 EALEALKEADLLIVIGTSLKVYPAAGLPELAKRRGAKVIEINLEPTRLD--PIADEVIRGDAGEVLPLLLEEL 245 (250)
T ss_pred HHHHHhccCCEEEEECcceEEcChhhhhHHHHhcCCEEEEECCCcccCc--chhHHHHHhhHHHHHHHHHHHh
Confidence 45566689999999999875444333222 134567888888665443 1111 123455555555443
No 402
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=40.16 E-value=22 Score=34.01 Aligned_cols=45 Identities=16% Similarity=0.221 Sum_probs=30.5
Q ss_pred HHHHhhhCCEEEEeCCccCCcccccccc-c-CCCcceEEEcCCceee
Q 007917 296 CGEIVESADAYVFVGPIFNDYSSVGYSL-L-IKKEKAIIVQPHRVTV 340 (585)
Q Consensus 296 ~~~~l~~aD~vl~lG~~~~~~~~~~~~~-~-~~~~~~i~id~~~~~~ 340 (585)
+.+.+.++|++|++|+++.......+-. . ..+.+++.|+.++...
T Consensus 163 ~~~~~~~~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~~~~~~ 209 (222)
T cd00296 163 ALEALLEADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINREPTPA 209 (222)
T ss_pred HHHHHhcCCEEEEECCCccccCHHHHHHHHHHCCCcEEEECCCCCCC
Confidence 4456678999999999998665433321 1 2356788888877643
No 403
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=40.12 E-value=96 Score=32.98 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=30.2
Q ss_pred HHHHHHHHHh--cCCCEEEeCcccchhchHHHHHHHHHHhCCCeE
Q 007917 225 VEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (585)
Q Consensus 225 ~~~~~~~l~~--a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~ 267 (585)
++++.+.+.+ .+|++|+.|.+....+..+.+.+..+..|+.+.
T Consensus 11 ~~~l~~~l~~~g~~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~ 55 (414)
T cd08190 11 TAEVGMDLKNLGARRVCLVTDPNLAQLPPVKVVLDSLEAAGINFE 55 (414)
T ss_pred HHHHHHHHHHcCCCeEEEEECcchhhcchHHHHHHHHHHcCCcEE
Confidence 4445455543 478999999887766667788887777777654
No 404
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=39.75 E-value=92 Score=32.67 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=29.8
Q ss_pred HHHHHHHHHh-cCCCEEEeCccc-chhchHHHHHHHHHHhCCCeE
Q 007917 225 VEATADFLNK-AVKPVLVGGPNI-RVAKAQKAFIELADATGYPIA 267 (585)
Q Consensus 225 ~~~~~~~l~~-a~rpvIi~G~g~-~~~~a~~~l~~lae~l~~Pv~ 267 (585)
++++.+.+.+ .+|++||.|.+. ...+..+.+.+..+..++.+.
T Consensus 14 l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~ 58 (380)
T cd08185 14 LNELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVV 58 (380)
T ss_pred HHHHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEE
Confidence 4455555543 378999998876 355677888888787777654
No 405
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=39.73 E-value=67 Score=31.91 Aligned_cols=69 Identities=12% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh
Q 007917 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (585)
Q Consensus 221 ~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l 300 (585)
+.+.+++++++|.+++| +.+.|.| ........+.....++|.++.. ..+.|.+ ......+
T Consensus 114 ~~~~l~~~~~~i~~a~~-I~i~G~G-~s~~~A~~~~~~l~~~g~~~~~-------~~d~~~~-----------~~~~~~~ 173 (278)
T PRK11557 114 SEEKLHECVTMLRSARR-IILTGIG-ASGLVAQNFAWKLMKIGINAVA-------ERDMHAL-----------LATVQAL 173 (278)
T ss_pred CHHHHHHHHHHHhcCCe-EEEEecC-hhHHHHHHHHHHHhhCCCeEEE-------cCChHHH-----------HHHHHhC
Q ss_pred hhCCEEEEe
Q 007917 301 ESADAYVFV 309 (585)
Q Consensus 301 ~~aD~vl~l 309 (585)
.+-|++|++
T Consensus 174 ~~~Dv~I~i 182 (278)
T PRK11557 174 SPDDLLLAI 182 (278)
T ss_pred CCCCEEEEE
No 406
>PRK02947 hypothetical protein; Provisional
Probab=39.64 E-value=1.1e+02 Score=29.98 Aligned_cols=100 Identities=17% Similarity=0.129 Sum_probs=54.5
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhh-cCCC---CeEEe----cCchh----hHHHhhhhhhh-------
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLI-AEPE---LNLVG----CCNEL----NAGYAADGYAR------- 86 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~-~~~~---i~~i~----~~~E~----~A~~~A~gyar------- 86 (585)
.-..++.|++.|.+.+-=++||.-++. .+...+. +-.. ++.+. ..+.. .+.....+|..
T Consensus 26 i~~aa~lla~~i~~a~~I~i~G~G~S~--~vA~~~~~rlg~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (246)
T PRK02947 26 IEKAADLIADSIRNGGLIYVFGTGHSH--ILAEEVFYRAGGLAPVNPILEPSLMLHEGAVASSYLERVEGYAKAILDRYD 103 (246)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCcHHH--HHHHHhccccccCcccCCCCCHHHhccccHHHHHHhhhcccHHHHHHHHcC
Confidence 346778889999888888888875554 3333332 1100 11110 00111 11112222221
Q ss_pred hcCccEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCCCC
Q 007917 87 SRGVGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNS 127 (585)
Q Consensus 87 ~tg~~v~~~t~GpG-~~n~~~gl~~A~~~~~Pll~I~g~~~~ 127 (585)
.+..-++++-+-.| .-+.+..+..|...++|+|.||+...+
T Consensus 104 ~~~~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~~s 145 (246)
T PRK02947 104 IRPGDVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLAYS 145 (246)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCccc
Confidence 22233444444444 455888888899999999999997643
No 407
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=39.53 E-value=89 Score=28.87 Aligned_cols=65 Identities=18% Similarity=0.408 Sum_probs=28.7
Q ss_pred HHHHHHHHH--hcCCCEEEeCcccchh--chHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh
Q 007917 225 VEATADFLN--KAVKPVLVGGPNIRVA--KAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (585)
Q Consensus 225 ~~~~~~~l~--~a~rpvIi~G~g~~~~--~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l 300 (585)
++++.+.+. ..++|.+++-.--.+. -..+++++..+.-+-|++- .+|+-+| -..+++
T Consensus 90 le~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~~lr~~l~~~~~P~Ll--------------lFGTGwG-----L~~ev~ 150 (185)
T PF09936_consen 90 LEEAIEDIEEEEGKRPLLVATSARKYPNTISYAELRRMLEEEDRPVLL--------------LFGTGWG-----LAPEVM 150 (185)
T ss_dssp HHHHHHHHHHHHSS--EEEE--SS--SS-B-HHHHHHHHHH--S-EEE--------------EE--TT--------HHHH
T ss_pred HHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHHHHHHHHhccCCeEEE--------------EecCCCC-----CCHHHH
Confidence 344444443 4678888876544332 2467777777666666663 4454222 356778
Q ss_pred hhCCEEEE
Q 007917 301 ESADAYVF 308 (585)
Q Consensus 301 ~~aD~vl~ 308 (585)
+.||.+|-
T Consensus 151 ~~~D~iLe 158 (185)
T PF09936_consen 151 EQCDYILE 158 (185)
T ss_dssp TT-SEEB-
T ss_pred HhcCeeEc
Confidence 88887764
No 408
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=39.51 E-value=3.9e+02 Score=29.63 Aligned_cols=204 Identities=15% Similarity=0.092 Sum_probs=108.1
Q ss_pred HHHHHHHHHHcC--CCEEEecCC-CChHHHHHhhhcCCCCeEE-ecCchhhHHHhhhhhhhhcC-ccEEEEeCCcchHHH
Q 007917 30 GRHLARRLVEIG--AKDVFSVPG-DFNLTLLDHLIAEPELNLV-GCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSV 104 (585)
Q Consensus 30 a~~i~~~L~~~G--v~~vFg~PG-~~~~~l~~al~~~~~i~~i-~~~~E~~A~~~A~gyar~tg-~~v~~~t~GpG~~n~ 104 (585)
-....++|...+ .+.|.|.-| ..+..+.|-..+...-||| ...-|++++..|.|.|--.. +.-|. -.+|.
T Consensus 323 rk~~~~aL~~l~~~~~~vI~~~ad~~~st~td~~~~~~p~R~i~~giaEq~mv~ia~G~a~~g~~~Pf~~-----tf~~F 397 (632)
T KOG0523|consen 323 RKAFGEALAALAEADPRVIGGSADLKNSTLTDFFPKRFPERFIECGIAEQNMVGIANGIACRGRTIPFCG-----TFAAF 397 (632)
T ss_pred HHHHHHHHHHHhhcCcCeEEEecccCCCchhhhccccCccceEEEeeehhhhHHhhhchhcCCCccchhH-----HHHHH
Confidence 334444444433 234555444 4555677666544333555 44679999999988653222 12221 13444
Q ss_pred HHHHHH----hhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEE-EEecCcchhHHHHHHHHHHh
Q 007917 105 LNAIAG----AYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDTAISTA 179 (585)
Q Consensus 105 ~~gl~~----A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~l~~A~~~a 179 (585)
++=... +-.++.+++.+....... .|-+..- ++-...+.+|+.+.... .+..+. ..+..|+..|
T Consensus 398 ~trA~dqvr~~a~s~~~v~~v~th~~i~-~GeDGPt------h~~iedlA~frsiPn~~v~~PaD~----~et~~av~~A 466 (632)
T KOG0523|consen 398 FTRAFDQVRMGALSQANVIYVATHDSIG-LGEDGPT------HQPIEDLAMFRSIPNMIVFRPADG----NETENAVATA 466 (632)
T ss_pred HHHhhhheeehhhccCCcEEEEEecccc-ccCCCcc------cccHHHHHHHHhCCCceEEecCch----HHHHHHHHHH
Confidence 443333 445666776666655443 2322111 23344578999875533 223332 3456777888
Q ss_pred hhcC-CcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHH
Q 007917 180 LKES-KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIEL 258 (585)
Q Consensus 180 ~~~~-gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~l 258 (585)
...+ .|..+..+..-. +..... ....+.+..-.|...+--|+++|.|..-+.+.++...|
T Consensus 467 a~~~~~p~i~~~~r~~~----~~~~~~---------------~~~~igkg~~vl~~~~~dV~LiG~Gs~v~~cl~AA~~L 527 (632)
T KOG0523|consen 467 ANTKGTPSIRTLSRQNL----PIYNNT---------------EIEEIGKGKYVLQEVEPDVILIGTGSEVQECLEAAELL 527 (632)
T ss_pred HhcCCCeeEEEecCccc----cccCCC---------------chhhhccccEEEecCCCCEEEEeccHHHHHHHHHHHHH
Confidence 7765 488877764331 100000 01112222112333344699999999887788887888
Q ss_pred HHH-hCCCeEE
Q 007917 259 ADA-TGYPIAI 268 (585)
Q Consensus 259 ae~-l~~Pv~~ 268 (585)
.++ +++-|+.
T Consensus 528 ~~~gi~vrVvd 538 (632)
T KOG0523|consen 528 SEDGIKVRVVD 538 (632)
T ss_pred HhcCceEEEec
Confidence 755 6666665
No 409
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=39.41 E-value=62 Score=32.39 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh
Q 007917 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (585)
Q Consensus 221 ~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l 300 (585)
+++.+++++++|.+|+|..++ |.|.... ....+..-..++|.++.. +++.|-.. .....+
T Consensus 116 ~~~~l~~av~~L~~A~rI~~~-G~g~S~~-vA~~~~~~l~~ig~~~~~-------~~d~~~~~-----------~~~~~~ 175 (281)
T COG1737 116 DEEALERAVELLAKARRIYFF-GLGSSGL-VASDLAYKLMRIGLNVVA-------LSDTHGQL-----------MQLALL 175 (281)
T ss_pred CHHHHHHHHHHHHcCCeEEEE-EechhHH-HHHHHHHHHHHcCCceeE-------ecchHHHH-----------HHHHhC
Confidence 467899999999999985555 4444332 344455555678888886 22222110 123456
Q ss_pred hhCCEEEEeCC
Q 007917 301 ESADAYVFVGP 311 (585)
Q Consensus 301 ~~aD~vl~lG~ 311 (585)
.+-|++|+|.-
T Consensus 176 ~~~Dv~i~iS~ 186 (281)
T COG1737 176 TPGDVVIAISF 186 (281)
T ss_pred CCCCEEEEEeC
Confidence 78899999853
No 410
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=39.38 E-value=87 Score=25.60 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhhcCCCCeEEEEEEcCCCCChHHHHHHHHhhhhhcC
Q 007917 534 DELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANS 579 (585)
Q Consensus 534 ~eL~~al~~a~~~~~~gp~vIeV~v~~~~~~~~~~~~~~~~~~~~~ 579 (585)
+++++.|+..++ +-.+|+.|.+.++.++....++++++.+.+.+.
T Consensus 4 ~~~~~qL~~~f~-~l~~pV~l~~f~~~~~~~~e~~~ll~e~a~lSd 48 (94)
T cd02974 4 ANLKQQLKAYLE-RLENPVELVASLDDSEKSAELLELLEEIASLSD 48 (94)
T ss_pred HHHHHHHHHHHH-hCCCCEEEEEEeCCCcchHHHHHHHHHHHHhCC
Confidence 345666666654 346899999999988899999999998877543
No 411
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=39.35 E-value=48 Score=31.19 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEE
Q 007917 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (585)
Q Consensus 224 ~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~ 268 (585)
.+.+++..+...++.+-++-....+.++.++|+.+|+.+|+|++.
T Consensus 17 t~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~ 61 (196)
T PF00448_consen 17 TIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYV 61 (196)
T ss_dssp HHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEE
T ss_pred HHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccch
Confidence 445555554433555555555666678999999999999999987
No 412
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=39.27 E-value=95 Score=33.59 Aligned_cols=88 Identities=11% Similarity=0.114 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHhhC--------CCCCEEEecCCccccccccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEE
Q 007917 391 LRVNVLFKHIQDML--------SGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIA 462 (585)
Q Consensus 391 ~~~~~~~~~L~~~l--------~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~ 462 (585)
..+..++..+.+.+ ....++++-.++.-. -++.+|++|.+.|-||++|+-+.-. .+-.|.+
T Consensus 233 ~e~~~I~~~v~~~~~~~~~~~l~gkkvLITaGpT~E~-------IDpVR~ItN~SSGkmG~alA~aa~~----~GA~Vtl 301 (475)
T PRK13982 233 AEPLEIAAAAEALLRPPQPKPLAGRRVLITAGPTHEP-------IDPVRYIANRSSGKQGFAIAAAAAA----AGAEVTL 301 (475)
T ss_pred CCHHHHHHHHHHHHhhccccccCCCEEEEecCCcccc-------CCcceeeCCCCchHHHHHHHHHHHH----CCCcEEE
Confidence 34566666665444 333455543333221 1345699999999999988766543 3567999
Q ss_pred EEcCchhH--------------hHHHHHHhCCCeEEEEEeC
Q 007917 463 CIGDGSFQ--------------EISTMIRCGQRSIIFLINN 489 (585)
Q Consensus 463 v~GDGsf~--------------eL~ta~~~~lpv~ivV~NN 489 (585)
+.|-.++. |+..+++..++.-++|+.=
T Consensus 302 I~Gp~~~~~p~~v~~i~V~ta~eM~~av~~~~~~Di~I~aA 342 (475)
T PRK13982 302 ISGPVDLADPQGVKVIHVESARQMLAAVEAALPADIAIFAA 342 (475)
T ss_pred EeCCcCCCCCCCceEEEecCHHHHHHHHHhhCCCCEEEEec
Confidence 99977652 7888877666655555543
No 413
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=39.26 E-value=98 Score=32.40 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=30.4
Q ss_pred HHHHHHHHHHh--cCCCEEEeCcccchhchHHHHHHHHHHhCCCeE
Q 007917 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (585)
Q Consensus 224 ~~~~~~~~l~~--a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~ 267 (585)
.++++.+.+.+ .+|++|+.|.+....+..+.+.+..+..++.+.
T Consensus 10 ~~~~l~~~~~~~~~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~ 55 (375)
T cd08194 10 AVDETGAVLADLGGKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESA 55 (375)
T ss_pred HHHHHHHHHHHcCCCeEEEEcCcchhhcchHHHHHHHHHHCCCeEE
Confidence 34555555553 579999998887755566778887777777554
No 414
>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=39.12 E-value=1.8e+02 Score=31.77 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCcccchh----chHHHHHHHHHHhC
Q 007917 222 EAAVEATADFLNKAVKPVLVGGPNIRVA----KAQKAFIELADATG 263 (585)
Q Consensus 222 ~~~~~~~~~~l~~a~rpvIi~G~g~~~~----~a~~~l~~lae~l~ 263 (585)
.+.++++++++.++++++|+.|.|..+. .....+..|+..+|
T Consensus 265 ~~~i~~lA~~~~~~~~~~i~~g~g~~~~~~g~~~~~a~~~L~~l~G 310 (512)
T cd02753 265 AEDIREAARMYATAKSAAILWGMGVTQHSHGTDNVMALSNLALLTG 310 (512)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCchhhhhhhHHHHHHHHHHHHHHhC
Confidence 3568899999999999999999887653 23344444555444
No 415
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=39.09 E-value=88 Score=32.80 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=30.3
Q ss_pred HHHHHHHHHh--cCCCEEEeCcccchhchHHHHHHHHHHhCCCeE
Q 007917 225 VEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (585)
Q Consensus 225 ~~~~~~~l~~--a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~ 267 (585)
++++.+.+.+ .+|++|+.|.+....+..+.+.+..+..++.+.
T Consensus 17 l~~l~~~l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~ 61 (379)
T TIGR02638 17 IEDIVDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYE 61 (379)
T ss_pred HHHHHHHHHhcCCCEEEEEcCcchhhccchHHHHHHHHHCCCeEE
Confidence 4445455543 479999999887665677888887788787654
No 416
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.00 E-value=47 Score=29.88 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=30.1
Q ss_pred cCCC-EEEeCcccchh----chHHHHHHHHHHhCCCeEEccCCcc
Q 007917 235 AVKP-VLVGGPNIRVA----KAQKAFIELADATGYPIAIMPSGKG 274 (585)
Q Consensus 235 a~rp-vIi~G~g~~~~----~a~~~l~~lae~l~~Pv~~t~~gkg 274 (585)
.+.| ++++|.-+... -..++..+||+++|+|.+.|....|
T Consensus 122 cE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 122 CENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred cCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccC
Confidence 4555 77788776532 2468889999999999999876554
No 417
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=38.92 E-value=84 Score=33.05 Aligned_cols=57 Identities=21% Similarity=0.243 Sum_probs=38.3
Q ss_pred HhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEE
Q 007917 233 NKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVF 308 (585)
Q Consensus 233 ~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~ 308 (585)
.+++|.-|| --...|-+|.++|+.+|+.+|+|+-.-...+.. ..+...+.++|+||+
T Consensus 231 ~~~~kVaiI-TtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el------------------~~ai~~l~~~d~ILV 287 (407)
T COG1419 231 KKKKKVAII-TTDTYRIGAVEQLKTYADIMGVPLEVVYSPKEL------------------AEAIEALRDCDVILV 287 (407)
T ss_pred ccCcceEEE-EeccchhhHHHHHHHHHHHhCCceEEecCHHHH------------------HHHHHHhhcCCEEEE
Confidence 344444444 444555689999999999999999874433311 234556788999887
No 418
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=38.80 E-value=1.2e+02 Score=31.77 Aligned_cols=44 Identities=11% Similarity=0.184 Sum_probs=32.6
Q ss_pred HHHHHHHHHH--hcCCCEEEeCcccchhchHHHHHHHHHHhCCCeE
Q 007917 224 AVEATADFLN--KAVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (585)
Q Consensus 224 ~~~~~~~~l~--~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~ 267 (585)
.++++.+.+. ..+|++||.+.+....+..+.+.+..+..++.+.
T Consensus 16 ~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~ 61 (377)
T COG1454 16 SLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYE 61 (377)
T ss_pred hHHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcCCeEE
Confidence 3455555555 4589999999998877778888888888776544
No 419
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=38.78 E-value=1.2e+02 Score=31.88 Aligned_cols=75 Identities=17% Similarity=0.242 Sum_probs=43.7
Q ss_pred HHHHHHHHHh--cCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh--
Q 007917 225 VEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV-- 300 (585)
Q Consensus 225 ~~~~~~~l~~--a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l-- 300 (585)
++++.+.+.+ .+|++|+.|.+....+..+.+.+..+..++.+.. +.+ + +.+|-.-.+ ..+.+.+
T Consensus 16 l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~-f~~---v-~~~p~~~~v-------~~~~~~~~~ 83 (377)
T cd08176 16 IKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVI-YDG---V-KPNPTITNV-------KDGLAVFKK 83 (377)
T ss_pred HHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEE-eCC---C-CCCCCHHHH-------HHHHHHHHh
Confidence 4455555554 4788888888776556788888887877776533 111 1 123322111 1122223
Q ss_pred hhCCEEEEeCC
Q 007917 301 ESADAYVFVGP 311 (585)
Q Consensus 301 ~~aD~vl~lG~ 311 (585)
.++|+||.||.
T Consensus 84 ~~~D~IIavGG 94 (377)
T cd08176 84 EGCDFIISIGG 94 (377)
T ss_pred cCCCEEEEeCC
Confidence 37999999984
No 420
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=38.60 E-value=1.2e+02 Score=31.62 Aligned_cols=75 Identities=13% Similarity=0.177 Sum_probs=43.4
Q ss_pred HHHHHHHHHh--cCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh--
Q 007917 225 VEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV-- 300 (585)
Q Consensus 225 ~~~~~~~l~~--a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l-- 300 (585)
++++.+.+.+ .+|++|+.|......+..+.+.+..+..|+.+.. +.+ + +.||-.-.+ ..+.+.+
T Consensus 12 ~~~l~~~l~~~g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~-~~~---v-~~~p~~~~v-------~~~~~~~~~ 79 (370)
T cd08192 12 IKELPAECAELGIKRPLIVTDPGLAALGLVARVLALLEDAGLAAAL-FDE---V-PPNPTEAAV-------EAGLAAYRA 79 (370)
T ss_pred HHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEE-eCC---C-CCCCCHHHH-------HHHHHHHHh
Confidence 4455555554 4789999998876555677788777777776543 111 1 223322111 1122222
Q ss_pred hhCCEEEEeCC
Q 007917 301 ESADAYVFVGP 311 (585)
Q Consensus 301 ~~aD~vl~lG~ 311 (585)
.++|+||.||.
T Consensus 80 ~~~d~IIaiGG 90 (370)
T cd08192 80 GGCDGVIAFGG 90 (370)
T ss_pred cCCCEEEEeCC
Confidence 46899999974
No 421
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=38.53 E-value=95 Score=36.53 Aligned_cols=98 Identities=10% Similarity=0.059 Sum_probs=58.7
Q ss_pred cEEEEeCCcchH-H---HHHHHHHhhhcCCcE---EEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEec
Q 007917 91 GACVVTFTVGGL-S---VLNAIAGAYSENLPV---ICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN 163 (585)
Q Consensus 91 ~v~~~t~GpG~~-n---~~~gl~~A~~~~~Pl---l~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~ 163 (585)
.++++..|=|+. | ..-++-=|..-+.|+ |+|+-+.... ..+.. .+........|....+ .+.-+...=.
T Consensus 344 ~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg-~tT~~--~~~~s~~~~sd~Ak~y-giP~~~VDG~ 419 (929)
T TIGR00239 344 VLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIG-FTTNP--LDARSTPYCSDLAKMI-QAPIFHVNAD 419 (929)
T ss_pred eEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEE-EEEcH--HHhcCccCHHHHheec-CCCEEEECCC
Confidence 677888887663 3 445555577789996 7777653222 11100 0000001111212222 2344555566
Q ss_pred CcchhHHHHHHHHHHhhhcCCcEEEEecC
Q 007917 164 NLGDAHELIDTAISTALKESKPVYISISC 192 (585)
Q Consensus 164 ~~~~~~~~l~~A~~~a~~~~gPV~i~iP~ 192 (585)
+++.+...++.|++.++...|||.|++=.
T Consensus 420 D~~AV~~a~~~Ave~~r~g~gPvlIE~~t 448 (929)
T TIGR00239 420 DPEAVAFATRLAVEYRNTFKRDVFIDLVG 448 (929)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEEEe
Confidence 88899999999999999999999999853
No 422
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=38.43 E-value=36 Score=35.55 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCCEEEeCcccchhc----hHHHHHHHHHHh
Q 007917 226 EATADFLNKAVKPVLVGGPNIRVAK----AQKAFIELADAT 262 (585)
Q Consensus 226 ~~~~~~l~~a~rpvIi~G~g~~~~~----a~~~l~~lae~l 262 (585)
..+++.|.++++|+||+|.++.... ....+..|++..
T Consensus 212 ~~~~~~L~~ak~p~Ii~G~~~~~~~~~~~~~~~~~~l~~~~ 252 (366)
T cd02774 212 HLFCKQLKKSKKPLIIIGSSFSLRKNYSFIISKLKNFSSNN 252 (366)
T ss_pred hHHHHHHhcCCCCEEEEChHHhCCCCHHHHHHHHHHHHHhh
Confidence 3466789999999999999987542 244455666664
No 423
>cd08770 DAP_dppA_3 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=38.28 E-value=3.3e+02 Score=26.97 Aligned_cols=142 Identities=16% Similarity=0.111 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCC--hHHHHHhhhcCCCCeEEecCc-----------hhhHHHhhhhhh-hhcCc-cEE
Q 007917 29 LGRHLARRLVEIGAKDVFSVPGDF--NLTLLDHLIAEPELNLVGCCN-----------ELNAGYAADGYA-RSRGV-GAC 93 (585)
Q Consensus 29 ~a~~i~~~L~~~Gv~~vFg~PG~~--~~~l~~al~~~~~i~~i~~~~-----------E~~A~~~A~gya-r~tg~-~v~ 93 (585)
=..+.++.+.+.|.+.|.-.-+.. ..=+.+.|. ++.++|.... |.--+.+=.||. ++.+. +++
T Consensus 38 evnAaiega~~aGa~eIvV~DsHg~~~Nll~e~L~--~~a~lI~G~~~rp~~Mm~Gld~s~D~v~fiGYHa~ag~~~gvL 115 (263)
T cd08770 38 EVVAACEGAIEAGATEIVVKDAHGSGRNILPSKLP--DNVKLIRGWSGHPYCMVEGLDESFDAVMFIGYHSAAGSPGNPL 115 (263)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCCCccCcChHHCC--cceEEEeCCCCCcchHhhccccCccEEEEEecCCccCCCCCcc
Confidence 345677999999999999876433 334666664 4677774422 222233334643 34323 443
Q ss_pred EEeCCcchH----------HHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEec
Q 007917 94 VVTFTVGGL----------SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN 163 (585)
Q Consensus 94 ~~t~GpG~~----------n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~ 163 (585)
-=|.-.... ...-.-+-|-.-++||+++|||......-+. .. ++. .....=+.+. ++....
T Consensus 116 ~HT~~~~~~~v~iNG~~~gE~~lna~~Ag~~gVPV~lvsGD~~~~~ea~~-----~~--P~~-~tv~vK~~~g-~aa~~~ 186 (263)
T cd08770 116 AHTLTGGVSYVKINGEIASEFLINAYTAAYLGVPVVFVSGDAGLCAEAKE-----LN--PNI-VTVPVKEGFG-GATISI 186 (263)
T ss_pred ccccccceEEEEECCEEcCHHHHHHHHHhhcCCCEEEEecCHHHHHHHHH-----hC--CCc-eEEEeeeeec-cccccC
Confidence 222111111 1111112234469999999998533210000 00 000 0000011122 445556
Q ss_pred CcchhHHHHHHHHHHhhh
Q 007917 164 NLGDAHELIDTAISTALK 181 (585)
Q Consensus 164 ~~~~~~~~l~~A~~~a~~ 181 (585)
+|+++.+.|+++.+.|..
T Consensus 187 ~p~~a~~~I~~~~~~Al~ 204 (263)
T cd08770 187 HPGLACKEIRKGVKKALS 204 (263)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 788888999999988853
No 424
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=37.90 E-value=2.1e+02 Score=28.52 Aligned_cols=92 Identities=14% Similarity=0.012 Sum_probs=57.7
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC---CCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHH-HH
Q 007917 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS-VL 105 (585)
Q Consensus 31 ~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~---~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n-~~ 105 (585)
+.+++.|.+..=-++|| ++.+..+...+... -+++++...+..... .++...+. -++++.+-.|-+. .+
T Consensus 121 ~~av~~L~~A~rI~~~G--~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~----~~~~~~~~~Dv~i~iS~sG~t~e~i 194 (281)
T COG1737 121 ERAVELLAKARRIYFFG--LGSSGLVASDLAYKLMRIGLNVVALSDTHGQL----MQLALLTPGDVVIAISFSGYTREIV 194 (281)
T ss_pred HHHHHHHHcCCeEEEEE--echhHHHHHHHHHHHHHcCCceeEecchHHHH----HHHHhCCCCCEEEEEeCCCCcHHHH
Confidence 45578888887778888 33444555544321 255666555554333 24444444 4555555555444 78
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCc
Q 007917 106 NAIAGAYSENLPVICIVGGPNSN 128 (585)
Q Consensus 106 ~gl~~A~~~~~Pll~I~g~~~~~ 128 (585)
..+..|...++|+|.||....+.
T Consensus 195 ~~a~~ak~~ga~vIaiT~~~~sp 217 (281)
T COG1737 195 EAAELAKERGAKVIAITDSADSP 217 (281)
T ss_pred HHHHHHHHCCCcEEEEcCCCCCc
Confidence 88888999999999999975444
No 425
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=37.71 E-value=1.8e+02 Score=27.35 Aligned_cols=37 Identities=22% Similarity=0.396 Sum_probs=27.6
Q ss_pred CcEEEEEcCchhH-hHHHHHHhC---CCeEEEEEeC-Cceee
Q 007917 458 KRVIACIGDGSFQ-EISTMIRCG---QRSIIFLINN-GGYTI 494 (585)
Q Consensus 458 ~~vv~v~GDGsf~-eL~ta~~~~---lpv~ivV~NN-~~~~~ 494 (585)
+-+|.+.|-||-+ .|..+.+-+ .-+..|+-|| +.|+.
T Consensus 2 ki~VlaSG~GSNlqaiida~~~~~~~a~i~~Visd~~~A~~l 43 (200)
T COG0299 2 KIAVLASGNGSNLQAIIDAIKGGKLDAEIVAVISDKADAYAL 43 (200)
T ss_pred eEEEEEeCCcccHHHHHHHHhcCCCCcEEEEEEeCCCCCHHH
Confidence 3578899999998 888887643 3477777788 56765
No 426
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=37.63 E-value=2e+02 Score=26.30 Aligned_cols=89 Identities=11% Similarity=0.017 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCCCEEEecCCCChHHHHHhhhc---CCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcchHH-HH
Q 007917 30 GRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIA---EPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLS-VL 105 (585)
Q Consensus 30 a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~---~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~n-~~ 105 (585)
-+.+++.|.+.+-=++||.-++ ..+...+.. .-++.++...+ .. ....+..-++++-+-.|.+. .+
T Consensus 20 ~~~~~~~l~~a~~I~i~G~G~S--~~~A~~~~~~l~~~g~~~~~~~~-~~-------~~~~~~~Dv~I~iS~sG~t~~~i 89 (179)
T TIGR03127 20 LDKLADKIIKAKRIFVAGAGRS--GLVGKAFAMRLMHLGFNVYVVGE-TT-------TPSIKKGDLLIAISGSGETESLV 89 (179)
T ss_pred HHHHHHHHHhCCEEEEEecCHH--HHHHHHHHHHHHhCCCeEEEeCC-cc-------cCCCCCCCEEEEEeCCCCcHHHH
Confidence 3567788888776666666444 333333321 12444444322 11 12233335565556666544 77
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCc
Q 007917 106 NAIAGAYSENLPVICIVGGPNSN 128 (585)
Q Consensus 106 ~gl~~A~~~~~Pll~I~g~~~~~ 128 (585)
..+..|...++|+|.||+.....
T Consensus 90 ~~~~~ak~~g~~ii~IT~~~~s~ 112 (179)
T TIGR03127 90 TVAKKAKEIGATVAAITTNPEST 112 (179)
T ss_pred HHHHHHHHCCCeEEEEECCCCCc
Confidence 88888999999999999975544
No 427
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=37.23 E-value=51 Score=36.40 Aligned_cols=114 Identities=12% Similarity=0.076 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHhc------CCCEEEeCcccch-hchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCcee---eecCC
Q 007917 221 LEAAVEATADFLNKA------VKPVLVGGPNIRV-AKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIG---TYWGA 290 (585)
Q Consensus 221 ~~~~~~~~~~~l~~a------~rpvIi~G~g~~~-~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G---~~~g~ 290 (585)
.+++++.+++.|++. +...++.|.+... .........|...+|.+-+.+. +.+.. .+...+ .+ |.
T Consensus 71 WdeAl~~ia~kl~~i~~~~G~~~i~~~~g~~~~~~~~~~~~~~~~~~~lG~~~~~~~---~~~~~-~~~~~~~~~~~-G~ 145 (539)
T cd02762 71 WDEAFDEIAERLRAIRARHGGDAVGVYGGNPQAHTHAGGAYSPALLKALGTSNYFSA---ATADQ-KPGHFWSGLMF-GH 145 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEecCcccccchHHHHHHHHHHHhCCCccccc---cchhh-hHHHHHHHHhc-CC
Confidence 567788888887642 3445555554432 1112223466667775532211 00100 000000 11 11
Q ss_pred CCCHHHHHHhhhCCEEEEeCCccCCccccccc------c----cCCCcceEEEcCCceee
Q 007917 291 VSSSFCGEIVESADAYVFVGPIFNDYSSVGYS------L----LIKKEKAIIVQPHRVTV 340 (585)
Q Consensus 291 ~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~------~----~~~~~~~i~id~~~~~~ 340 (585)
... ...+-+.++|+||++|+...+.....+. . ..++.++|.||+.....
T Consensus 146 ~~~-~~~~D~~~ad~il~~G~N~~~s~~~~~~~~~~~~~~~~a~~~G~kliviDPr~t~t 204 (539)
T cd02762 146 PGL-HPVPDIDRTDYLLILGANPLQSNGSLRTAPDRVLRLKAAKDRGGSLVVIDPRRTET 204 (539)
T ss_pred CCC-CCchhhhhCCEEEEEecChHhhCCccccccCHHHHHHHHHhCCCEEEEECCCCchh
Confidence 111 1123458999999999876544321111 1 12456899999876543
No 428
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=37.11 E-value=87 Score=34.97 Aligned_cols=90 Identities=14% Similarity=0.122 Sum_probs=54.1
Q ss_pred EEEEEcCchhH----hHHHHHHhCCC------eEEEEEeCCce-eeeeeecCCCCCCCCCCCHHHHHHHhcCCCCCccEE
Q 007917 460 VIACIGDGSFQ----EISTMIRCGQR------SIIFLINNGGY-TIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTA 528 (585)
Q Consensus 460 vv~v~GDGsf~----eL~ta~~~~lp------v~ivV~NN~~~-~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~ 528 (585)
-|.+=||++|. -.+|..-..|| -+.||.||... .. +..+.. ..+--..+|+++++ +-+
T Consensus 404 ~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTT-----DPR~aR-SspYcTDvar~v~a-----PIF 472 (1017)
T KOG0450|consen 404 GILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTT-----DPRFAR-SSPYCTDVARVVNA-----PIF 472 (1017)
T ss_pred EEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEcccccccc-----Cccccc-CCCCchhHHHHhCC-----CeE
Confidence 56788999997 22333323333 46678888732 22 111111 23345778999998 555
Q ss_pred Ee--cCHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007917 529 KV--RSEDELTEAMKTATG--EQKDSLCFIEVFVHK 560 (585)
Q Consensus 529 ~v--~~~~eL~~al~~a~~--~~~~gp~vIeV~v~~ 560 (585)
.| ++++.+--+.+-|-+ ..-++=+|||+.+-+
T Consensus 473 HVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlVcyR 508 (1017)
T KOG0450|consen 473 HVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYR 508 (1017)
T ss_pred eecCCChHHHHHHHHHHHHHHHHhccCeEEEEEEEe
Confidence 55 577776666665544 234677999998754
No 429
>PRK15482 transcriptional regulator MurR; Provisional
Probab=36.99 E-value=69 Score=31.99 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh
Q 007917 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (585)
Q Consensus 221 ~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l 300 (585)
+.+.+++++++|.+|+| +.+.|.|... -....+....-++|.++.. ..+.|... .....+
T Consensus 121 d~~~l~~~~~~i~~A~~-I~i~G~G~S~-~~A~~l~~~l~~~g~~~~~-------~~d~~~~~-----------~~~~~~ 180 (285)
T PRK15482 121 DYARLQKIIEVISKAPF-IQITGLGGSA-LVGRDLSFKLMKIGYRVAC-------EADTHVQA-----------TVSQAL 180 (285)
T ss_pred CHHHHHHHHHHHHhCCe-eEEEEeChhH-HHHHHHHHHHHhCCCeeEE-------eccHhHHH-----------HHHhcC
Q ss_pred hhCCEEEEe
Q 007917 301 ESADAYVFV 309 (585)
Q Consensus 301 ~~aD~vl~l 309 (585)
.+-|++|++
T Consensus 181 ~~~Dv~i~i 189 (285)
T PRK15482 181 KKGDVQIAI 189 (285)
T ss_pred CCCCEEEEE
No 430
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=36.95 E-value=2.5e+02 Score=25.58 Aligned_cols=88 Identities=15% Similarity=0.056 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHhhhc---CCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCc-chHHHHH
Q 007917 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLIA---EPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTV-GGLSVLN 106 (585)
Q Consensus 31 ~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~---~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~Gp-G~~n~~~ 106 (585)
+.+++.|.+.+-=++||+-++ ..+...+.. .-++.++...+. .....+..-++++.|-. -..+.+.
T Consensus 24 ~~~~~~i~~a~~I~i~G~G~S--~~~A~~~~~~l~~~g~~~~~~~~~--------~~~~~~~~D~vI~iS~sG~t~~~i~ 93 (179)
T cd05005 24 DKLISAILNAKRIFVYGAGRS--GLVAKAFAMRLMHLGLNVYVVGET--------TTPAIGPGDLLIAISGSGETSSVVN 93 (179)
T ss_pred HHHHHHHHhCCeEEEEecChh--HHHHHHHHHHHHhCCCeEEEeCCC--------CCCCCCCCCEEEEEcCCCCcHHHHH
Confidence 556788888866667776333 333333321 124555543321 11123334444444444 4566888
Q ss_pred HHHHhhhcCCcEEEEeCCCCCc
Q 007917 107 AIAGAYSENLPVICIVGGPNSN 128 (585)
Q Consensus 107 gl~~A~~~~~Pll~I~g~~~~~ 128 (585)
.+..|...++|+|.||+.....
T Consensus 94 ~~~~ak~~g~~iI~IT~~~~s~ 115 (179)
T cd05005 94 AAEKAKKAGAKVVLITSNPDSP 115 (179)
T ss_pred HHHHHHHCCCeEEEEECCCCCc
Confidence 8889999999999999976554
No 431
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=36.85 E-value=72 Score=27.38 Aligned_cols=45 Identities=20% Similarity=0.143 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEE
Q 007917 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (585)
Q Consensus 224 ~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~ 268 (585)
.+.+..+.|.+++-=-+.++.+-....-.+++.++|+++++|++.
T Consensus 60 ~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ 104 (123)
T PF07905_consen 60 ELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLIE 104 (123)
T ss_pred HHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEEE
Confidence 456666777766555555554433336789999999999999998
No 432
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=36.48 E-value=44 Score=33.01 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=32.6
Q ss_pred HHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEc
Q 007917 229 ADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (585)
Q Consensus 229 ~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t 269 (585)
+..+.+...-+|+.|......+....=..+||.||||.+|.
T Consensus 104 aa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~ 144 (260)
T COG2086 104 AAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTY 144 (260)
T ss_pred HHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeee
Confidence 34445555559999999988777777788999999999984
No 433
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=36.31 E-value=2.4e+02 Score=30.81 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCcccchhc----hHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCC----
Q 007917 222 EAAVEATADFLNKAVKPVLVGGPNIRVAK----AQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSS---- 293 (585)
Q Consensus 222 ~~~~~~~~~~l~~a~rpvIi~G~g~~~~~----a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~---- 293 (585)
.+.++++++++.++++++|+.|.|..++. ....+..|+-.+|-- .-.|.|++.....--+..+.-..++
T Consensus 266 ~~~I~~~A~~~a~~~~~~i~~g~g~~~~~~g~~~~~ai~~L~~ltG~~---g~~G~g~~~~~~~~~ik~l~~~g~Np~~~ 342 (501)
T cd02766 266 AEEIEELARLYGEAKPPSIRLGYGMQRYRNGGQNVRAIDALPALTGNI---GVPGGGAFYSNSGPPVKALWVYNSNPVAQ 342 (501)
T ss_pred HHHHHHHHHHHHhCCCcEEEecchhhhccchHHHHHHHHHHHHHhCCC---CCCCCcccCCCCCCCeeEEEEeCCCHHhh
Confidence 45688999999999999999998876432 233444454444410 0112233322110001111011111
Q ss_pred ----HHHHH-HhhhCCEEEEeCCccCCcc
Q 007917 294 ----SFCGE-IVESADAYVFVGPIFNDYS 317 (585)
Q Consensus 294 ----~~~~~-~l~~aD~vl~lG~~~~~~~ 317 (585)
....+ ++++.|+++++...++++.
T Consensus 343 ~p~~~~~~~a~l~~~~f~Vv~D~~~teTa 371 (501)
T cd02766 343 APDSNKVRKGLAREDLFVVVHDQFMTDTA 371 (501)
T ss_pred CCCHHHHHHHHhcCCCeEEEEecCcCchH
Confidence 12344 6677889999887766543
No 434
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=36.12 E-value=1e+02 Score=31.88 Aligned_cols=82 Identities=11% Similarity=0.079 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCccc-chhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh
Q 007917 222 EAAVEATADFLNKAVKPVLVGGPNI-RVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (585)
Q Consensus 222 ~~~~~~~~~~l~~a~rpvIi~G~g~-~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l 300 (585)
++..+++.+.|..+...+|++|-|. ..+++...+.++++..+++++.-.. .|-...-..-.+ .......++.
T Consensus 89 ee~~d~Ir~~le~~D~vfI~aglGGGTGSG~apvia~~ake~~~l~vaivt----~Pf~~Eg~~r~~---nA~~~l~~L~ 161 (349)
T TIGR00065 89 EESRDEIRKLLEGADMVFITAGMGGGTGTGAAPVVAKIAKELGALTVAVVT----KPFKFEGLKRRK---KAEEGLERLK 161 (349)
T ss_pred HHHHHHHHHHHhCCCEEEEEEeccCccchhHHHHHHHHHHHcCCCEEEEEe----CCccccchhhHH---HHHHHHHHHH
Confidence 4456667777788888888888553 4467888999999998877665321 111111000000 0112344566
Q ss_pred hhCCEEEEeC
Q 007917 301 ESADAYVFVG 310 (585)
Q Consensus 301 ~~aD~vl~lG 310 (585)
+.+|.+|++-
T Consensus 162 ~~~D~vivid 171 (349)
T TIGR00065 162 QAVDTLIVIP 171 (349)
T ss_pred HhCCEEEEEe
Confidence 7899999984
No 435
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=35.46 E-value=2e+02 Score=27.08 Aligned_cols=73 Identities=19% Similarity=0.260 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHh-cCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhh
Q 007917 223 AAVEATADFLNK-AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVE 301 (585)
Q Consensus 223 ~~~~~~~~~l~~-a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~ 301 (585)
..+++|+..+.. +.+-++++|..- .+...++++|++.|.+.++.-.=-|. +.+.. .....
T Consensus 47 ~~L~~A~~~i~~i~~~~ILfVgtk~---~~~~~V~~~A~~~g~~~v~~RWlgGt---------------LTN~~-~~~~~ 107 (196)
T TIGR01012 47 ERLRVAAKFLVRIEPEDILVVSARI---YGQKPVLKFAKVTGARAIAGRFTPGT---------------FTNPM-QKAFR 107 (196)
T ss_pred HHHHHHHHHHHHhhCCeEEEEecCH---HHHHHHHHHHHHhCCceECCeeCCCC---------------CCCcc-ccccC
Confidence 456777766654 345577777654 36788999999999988764221122 22211 12357
Q ss_pred hCCEEEEeCCccC
Q 007917 302 SADAYVFVGPIFN 314 (585)
Q Consensus 302 ~aD~vl~lG~~~~ 314 (585)
.+|+|++++..-+
T Consensus 108 ~Pdlliv~dp~~~ 120 (196)
T TIGR01012 108 EPEVVVVTDPRAD 120 (196)
T ss_pred CCCEEEEECCccc
Confidence 8999999986543
No 436
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=35.45 E-value=46 Score=27.56 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=21.8
Q ss_pred CCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccC
Q 007917 236 VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS 271 (585)
Q Consensus 236 ~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~ 271 (585)
-.-+|+.|+.. ..+.+.++|+..++||+.|+.
T Consensus 62 i~~iIltg~~~----~~~~v~~la~~~~i~vi~t~~ 93 (105)
T PF07085_consen 62 IACIILTGGLE----PSEEVLELAKELGIPVISTPY 93 (105)
T ss_dssp ECEEEEETT--------HHHHHHHHHHT-EEEE-SS
T ss_pred CCEEEEeCCCC----CCHHHHHHHHHCCCEEEEECC
Confidence 46678887543 568999999999999999864
No 437
>KOG3954 consensus Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=35.40 E-value=89 Score=30.59 Aligned_cols=120 Identities=22% Similarity=0.253 Sum_probs=67.7
Q ss_pred HHHHhcCCC------EEEeCcccchh-chHHHHHHHHHHhCCCeEEccCC--ccCCCCCCCCceeeecCCCCCHHHHHHh
Q 007917 230 DFLNKAVKP------VLVGGPNIRVA-KAQKAFIELADATGYPIAIMPSG--KGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (585)
Q Consensus 230 ~~l~~a~rp------vIi~G~g~~~~-~a~~~l~~lae~l~~Pv~~t~~g--kg~~~~~hp~~~G~~~g~~~~~~~~~~l 300 (585)
+.|.+++|| +++.|+...-+ +..+.|..||++||+-|=.|-.+ .|.+|.+ +-+|.. | -+
T Consensus 205 ~~ltkseRPdL~sAkvVVsGGR~LKs~enFkll~~LAdklgaavGAtRaaVDaGyvpNd--lQiGQT-G---------KI 272 (336)
T KOG3954|consen 205 QELTKSERPDLTSAKVVVSGGRGLKSGENFKLLYDLADKLGAAVGATRAAVDAGYVPND--LQIGQT-G---------KI 272 (336)
T ss_pred hhcccccCCccccceEEEECCcccCCcccceehHHHHHHhchhhchhhhhhccCcCCCc--cccccc-c---------ce
Confidence 456678888 77777665544 56778999999999999887653 2555443 344542 2 12
Q ss_pred hhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeec-CCCcccc-ccHHHHHHHHHHHhcc
Q 007917 301 ESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG-NGPSLGW-VFMADFLSALAKKLRK 364 (585)
Q Consensus 301 ~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~-~~~~~~~-~~~~~~l~~L~~~l~~ 364 (585)
-...+-|++|-+-.-....+. .....++-|+-|++..= +...|+. .|+-.++.+|.+.|++
T Consensus 273 VAPeLYiAvGisGAIQHLAGm---KDSKvIvAINkDpdAPIFqvAD~GlvgDLfkiVPELtekL~k 335 (336)
T KOG3954|consen 273 VAPELYIAVGISGAIQHLAGM---KDSKVIVAINKDPDAPIFQVADYGLVGDLFKIVPELTEKLPK 335 (336)
T ss_pred eccceEEEEeccHHHHHhhcC---ccceEEEEecCCCCCCceeeecccchhhHHHHhHHHHHhccC
Confidence 246788888854211111121 12223556777765210 0112222 2555666777777653
No 438
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=35.30 E-value=1.3e+02 Score=31.78 Aligned_cols=43 Identities=7% Similarity=0.078 Sum_probs=28.9
Q ss_pred HHHHHHHHHh--cCCCEEEeCcccchhchHHHHHHHHHHhCCCeE
Q 007917 225 VEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (585)
Q Consensus 225 ~~~~~~~l~~--a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~ 267 (585)
++++.+.+++ .++++|+.|......+..+.+.+..+..|+.+.
T Consensus 37 ~~~l~~~~~~~g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~ 81 (395)
T PRK15454 37 VSSCGQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMT 81 (395)
T ss_pred HHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEE
Confidence 4455555543 477787777776666667778887788787654
No 439
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=35.26 E-value=2.1e+02 Score=28.37 Aligned_cols=141 Identities=23% Similarity=0.167 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCCh--HHHHHhhhcCCCCeEEecC----------chhhHHHhhhhhh-hhcC-ccEEE
Q 007917 29 LGRHLARRLVEIGAKDVFSVPGDFN--LTLLDHLIAEPELNLVGCC----------NELNAGYAADGYA-RSRG-VGACV 94 (585)
Q Consensus 29 ~a~~i~~~L~~~Gv~~vFg~PG~~~--~~l~~al~~~~~i~~i~~~----------~E~~A~~~A~gya-r~tg-~~v~~ 94 (585)
=..+.++.+.+.|.+.|.-.-+... .=+.+.|. ++.++|... +|.--+.+=.||. ++.. .+++.
T Consensus 38 evnAaiega~~aGa~eVvV~DsHg~~~Nll~e~L~--~~a~LI~G~pkp~~Mm~Gld~~~D~v~fiGYHa~ag~~~gvL~ 115 (266)
T cd08663 38 EVNAAIEGALEAGATEVLVNDSHGSMRNLLPEDLD--PRARLISGSPKPLGMMEGLDEGFDAALFVGYHARAGTPPGVLS 115 (266)
T ss_pred HHHHHHHHHHHcCCcEEEEEcCCCCccCcChHHCC--ccEEEEecCCCCchhhhccccCcCEEEEEecCCCcCCCCCccc
Confidence 3456779999999999999764433 34555554 356666332 3333344445643 4433 24432
Q ss_pred Ee-CCcc----------hHH-HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEe
Q 007917 95 VT-FTVG----------GLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVV 162 (585)
Q Consensus 95 ~t-~GpG----------~~n-~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v 162 (585)
=| +|-. +.. .+++ +-|-.-++||+++|||.-....-+. +. ++. .....=+.+.+++...
T Consensus 116 HT~s~~~v~~v~iNG~~vgE~glna-~~Ag~~gVPV~lVsGDd~~~~ea~~------~~-p~i-~tv~vK~~~gr~aa~~ 186 (266)
T cd08663 116 HTYSGGAVRDVRLNGREVGETGLNA-AVAGEYGVPVVLVTGDDAACAEARE------LG-PGV-ETVAVKEAIGRFAARC 186 (266)
T ss_pred ccccccceEEEEECCEEcCHHHHHH-HHHhhcCCCEEEEecCHHHHHHHHh------hC-CCc-EEEEEecccCCCcccc
Confidence 22 1210 111 1122 2233469999999998543210000 00 000 0001112334466677
Q ss_pred cCcchhHHHHHHHHHHhh
Q 007917 163 NNLGDAHELIDTAISTAL 180 (585)
Q Consensus 163 ~~~~~~~~~l~~A~~~a~ 180 (585)
.+|+++.+.|+++.+.|.
T Consensus 187 ~~p~~a~~~I~~~a~~Al 204 (266)
T cd08663 187 LPPAEARALIREAAAEAV 204 (266)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 789999999999998885
No 440
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=35.19 E-value=1.1e+02 Score=31.98 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=30.9
Q ss_pred HHHHHHHHHHh--cCCCEEEeCcccchhchHHHHHHHHHHhCCCeE
Q 007917 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (585)
Q Consensus 224 ~~~~~~~~l~~--a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~ 267 (585)
.++++.+.+.+ .+|++|+.|......+..+.+.+..++.++.+.
T Consensus 17 ~l~~l~~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~ 62 (382)
T PRK10624 17 AIGALTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYE 62 (382)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCeEE
Confidence 34555555554 478888888877666678888888888787553
No 441
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=35.12 E-value=1.2e+02 Score=31.80 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=28.7
Q ss_pred HHHHHHHHHh--cCCCEEEeCcccchhchHHHHHHHHHHhCCCeE
Q 007917 225 VEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (585)
Q Consensus 225 ~~~~~~~l~~--a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~ 267 (585)
++++.+.+.+ .+|++|+.|.+....+..+.+.+..+..|+.+.
T Consensus 14 l~~l~~~l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~ 58 (374)
T cd08189 14 LAQLPAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYA 58 (374)
T ss_pred HHHHHHHHHhcCCCeEEEEeCcchhhcccHHHHHHHHHhcCCeEE
Confidence 4444455543 478899988887655566777777777777554
No 442
>COG1915 Uncharacterized conserved protein [Function unknown]
Probab=34.89 E-value=9.8 Score=37.66 Aligned_cols=98 Identities=18% Similarity=0.192 Sum_probs=60.0
Q ss_pred HhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceee
Q 007917 261 ATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTV 340 (585)
Q Consensus 261 ~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~ 340 (585)
+.++|++-. |.+-+|-|+.=-..+-.-.....++.++.+|.||.+-+.+-+..+++.. +...|.|.+|++|...
T Consensus 301 kNniPfvLA----GSIRDDGPlPdvitdvm~Aq~~m~~~l~g~dmvlMlstMLHSIa~GNll--Ps~VKtiCVDiNPavV 374 (415)
T COG1915 301 KNNIPFVLA----GSIRDDGPLPDVITDVMEAQEEMREHLQGADMVLMLSTMLHSIAVGNLL--PSGVKTICVDINPAVV 374 (415)
T ss_pred hcCCCeEEe----cccccCCCCchHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHhhcCcc--hhhceEEEEecChHHh
Confidence 567787753 4466666663111000011233456788999999998877666655432 3456899999998754
Q ss_pred cC----CCc--ccc-ccHHHHHHHHHHHhcc
Q 007917 341 GN----GPS--LGW-VFMADFLSALAKKLRK 364 (585)
Q Consensus 341 ~~----~~~--~~~-~~~~~~l~~L~~~l~~ 364 (585)
.. ... .+- .|+..||..|...+++
T Consensus 375 TKL~DRGs~qavgvVTDVGlFlplL~~elkk 405 (415)
T COG1915 375 TKLSDRGSSQAVGVVTDVGLFLPLLVRELKK 405 (415)
T ss_pred eecccCCccceeEEEeehhHhHHHHHHHHHH
Confidence 31 111 111 2789999999887764
No 443
>TIGR01580 narG respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens, E.coli and B.subtilis. All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. P
Probab=34.68 E-value=1e+02 Score=37.30 Aligned_cols=117 Identities=9% Similarity=-0.060 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHHh------cCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCC
Q 007917 220 GLEAAVEATADFLNK------AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSS 293 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~------a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~ 293 (585)
..+++++.+++.|.. .++...+.+.+....-......+|...+|.+.+....--+-.|.-.|...|.. ...
T Consensus 161 SWDEAldlIAakl~~i~~kYGPdsI~~fs~~~a~s~~s~aa~~Rfl~llGg~~~~~~d~~Cd~p~a~p~v~G~~---t~~ 237 (1235)
T TIGR01580 161 SWQEVNELIAASNVYTVKNYGPDRVVGFSPIPAMSMVSYASGSRYLSLIGGTCLSFYDWYCDLPPASPQTWGEQ---TDV 237 (1235)
T ss_pred cHHHHHHHHHHHHHHHHHHhCcceEEEecCCCcccchhhHHHHHHHHhcCCccccCCCCcchhhHHhHhheecC---CCC
Confidence 356677777766543 33433343333321111223357888889876543322222233345545531 011
Q ss_pred HHHHHHhhhCCEEEEeCCccCCcccccccc----cCCCcceEEEcCCceee
Q 007917 294 SFCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVTV 340 (585)
Q Consensus 294 ~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~~~~~~ 340 (585)
... .-+.++|+||++|+......+..+.. ...+.|+|.||++....
T Consensus 238 ~e~-~D~~nS~~II~WGsN~~~T~~p~a~~l~eAr~rGaKvVVVDPr~t~t 287 (1235)
T TIGR01580 238 PES-ADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYAEI 287 (1235)
T ss_pred CCc-hhhhcCCEEEEECCChhhhcchhHHHHHHHHHcCCeEEEEcCCCChh
Confidence 111 23469999999998865443222211 12457999999987644
No 444
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=34.58 E-value=2e+02 Score=26.34 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEE
Q 007917 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (585)
Q Consensus 221 ~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~ 268 (585)
+.+.+++++++|.+++| ++++|.|....-+.....+| .++|.++..
T Consensus 19 ~~~~l~~~~~~i~~a~~-I~i~G~G~S~~~A~~~~~~l-~~~g~~~~~ 64 (179)
T cd05005 19 DEEELDKLISAILNAKR-IFVYGAGRSGLVAKAFAMRL-MHLGLNVYV 64 (179)
T ss_pred CHHHHHHHHHHHHhCCe-EEEEecChhHHHHHHHHHHH-HhCCCeEEE
Confidence 35678999999999976 78888876543233333333 456777776
No 445
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=34.48 E-value=1.3e+02 Score=31.26 Aligned_cols=43 Identities=14% Similarity=0.207 Sum_probs=27.7
Q ss_pred HHHHHHHHHh-cCCCEEEeCccc-chhchHHHHHHHHHHhCCCeE
Q 007917 225 VEATADFLNK-AVKPVLVGGPNI-RVAKAQKAFIELADATGYPIA 267 (585)
Q Consensus 225 ~~~~~~~l~~-a~rpvIi~G~g~-~~~~a~~~l~~lae~l~~Pv~ 267 (585)
++++.+.+.+ .+|++|+.|.+. ...+..+.+.+..+..|+.+.
T Consensus 14 l~~l~~~~~~~g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~ 58 (357)
T cd08181 14 VEKHGEELAALGKRALIVTGKSSAKKNGSLDDVTKALEELGIEYE 58 (357)
T ss_pred HHHHHHHHHHcCCEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEE
Confidence 3344444443 388999998876 434566778887777776543
No 446
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=34.47 E-value=36 Score=31.38 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=14.6
Q ss_pred HHHHHhhhCCEEEEeCCccC
Q 007917 295 FCGEIVESADAYVFVGPIFN 314 (585)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~ 314 (585)
.+.+.+++||++|++|+++.
T Consensus 156 ~~~~~~~~~Dl~lviGTSl~ 175 (178)
T PF02146_consen 156 EAIEDAEEADLLLVIGTSLQ 175 (178)
T ss_dssp HHHHHHHH-SEEEEESS-ST
T ss_pred HHHHHHHcCCEEEEEccCcE
Confidence 45557789999999999874
No 447
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=34.36 E-value=1.1e+02 Score=30.88 Aligned_cols=82 Identities=13% Similarity=0.065 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCCCEEEeC-cccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh
Q 007917 222 EAAVEATADFLNKAVKPVLVGG-PNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (585)
Q Consensus 222 ~~~~~~~~~~l~~a~rpvIi~G-~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l 300 (585)
++..+++.+.|..+...+|++| +|...+++...+.++++..+++++.-.. .|....-..-.| ......+++.
T Consensus 72 ~~~~~~I~~~l~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt----~Pf~~Eg~~~~~---nA~~~l~~L~ 144 (304)
T cd02201 72 EESREEIKEALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVT----KPFSFEGKKRMR---QAEEGLEELR 144 (304)
T ss_pred HHHHHHHHHHHhCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEEe----CCccccchhHHH---HHHHHHHHHH
Confidence 4455666677777887778877 4445567888899999999876654211 111100000000 0111344566
Q ss_pred hhCCEEEEeC
Q 007917 301 ESADAYVFVG 310 (585)
Q Consensus 301 ~~aD~vl~lG 310 (585)
+.+|.++++-
T Consensus 145 ~~~d~~ivid 154 (304)
T cd02201 145 KHVDTLIVIP 154 (304)
T ss_pred HhCCEEEEEe
Confidence 7899999984
No 448
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=34.05 E-value=78 Score=31.45 Aligned_cols=143 Identities=18% Similarity=0.152 Sum_probs=74.5
Q ss_pred cHHHHHHHHHHHcCCCEEEecCC--CChHHHHHhhhcCCCCeEEecC----------chhhHHHhhhhhhhhcCc--cEE
Q 007917 28 TLGRHLARRLVEIGAKDVFSVPG--DFNLTLLDHLIAEPELNLVGCC----------NELNAGYAADGYARSRGV--GAC 93 (585)
Q Consensus 28 ~~a~~i~~~L~~~Gv~~vFg~PG--~~~~~l~~al~~~~~i~~i~~~----------~E~~A~~~A~gyar~tg~--~v~ 93 (585)
.=..+.++.+.+.|.+.|.-.-+ +...=+++.|. ++.++|... +|.--+.+=.||.-..|. |++
T Consensus 37 ~evnAaiega~~aGa~eIvV~DsHg~~~Nl~~e~L~--~~a~LI~G~prp~~Mm~Gld~s~D~v~fiGYHa~aG~~~gvl 114 (270)
T cd08769 37 EELNAVLEELFESGFEEIVVADSHGRMDNIDYEELD--PRVSLVSGYPRPLSMMTGLDESFDAVLFIGYHAGAGTPKGIM 114 (270)
T ss_pred HHHHHHHHHHHHcCCcEEEEEcCCCCcCCCChHHCC--cceEEEecCCCCchHhhccccCccEEEEEecCCCCCCCCCcc
Confidence 34567789999999999998754 33334555564 456666332 333333334565533333 333
Q ss_pred EEe-CCcc----------hHH-HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEE
Q 007917 94 VVT-FTVG----------GLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAV 161 (585)
Q Consensus 94 ~~t-~GpG----------~~n-~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~ 161 (585)
-=| +|-. +.. .+++ +-|-.-++||+++|||.-....-+. .. ++. .....=+.+.+++..
T Consensus 115 ~HT~s~~~~~~v~iNG~~~gE~~lNa-~~Ag~~gVPV~lVsGDd~~~~ea~~-----~~--P~~-~tv~vK~~~gr~aA~ 185 (270)
T cd08769 115 DHTYSGSTIYNIWINGKEMNETLINA-AYAGEFGVPVVLVAGDSELEKEVKE-----ET--PWA-VFVPTKESLSRYSAK 185 (270)
T ss_pred ccccccCceEEEEECCEEcCHHHHHH-HHHhhcCCCEEEEecCHHHHHHHHH-----hC--CCc-eEEEEeeecCCCccc
Confidence 222 1211 111 1222 2233469999999998532210000 00 000 000111223346666
Q ss_pred ecCcchhHHHHHHHHHHhhh
Q 007917 162 VNNLGDAHELIDTAISTALK 181 (585)
Q Consensus 162 v~~~~~~~~~l~~A~~~a~~ 181 (585)
..+|+++.+.|+++.+.|..
T Consensus 186 ~~~p~~a~~~I~~aa~~Al~ 205 (270)
T cd08769 186 SPSMKKVKEELREAVKEALE 205 (270)
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 77888889999988888864
No 449
>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=33.96 E-value=24 Score=38.32 Aligned_cols=113 Identities=17% Similarity=0.174 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhcCCC------EEEeCcccchhchHHHHH-HHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCC
Q 007917 220 GLEAAVEATADFLNKAVKP------VLVGGPNIRVAKAQKAFI-ELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVS 292 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~a~rp------vIi~G~g~~~~~a~~~l~-~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~ 292 (585)
..+++++.+++.|++.++. .++.|.+........... +|+..+|.+.+.........+....+.... |..
T Consensus 74 sWdeAl~~ia~~l~~~~~~~G~~~i~~~~g~~~~~~~~~~~~~~~~~~~~Gs~~~~~~~~~c~~~~~~~~~~~~--G~~- 150 (477)
T cd02759 74 SWDEALDEIAEKLAEIKAEYGPESIATAVGTGRGTMWQDSLFWIRFVRLFGSPNLFLSGESCYWPRDMAHALTT--GFG- 150 (477)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCceEEEeccCCCccccchhHHHHHHHHhcCCCcccCCcccchHHHHHHHHHhh--ccC-
Q ss_pred CHHHHHHhhhCCEEEEeCCccCCccc-ccccccC----CCcceEEEcC
Q 007917 293 SSFCGEIVESADAYVFVGPIFNDYSS-VGYSLLI----KKEKAIIVQP 335 (585)
Q Consensus 293 ~~~~~~~l~~aD~vl~lG~~~~~~~~-~~~~~~~----~~~~~i~id~ 335 (585)
......-+.+||+||++|+.+.+... ..+..+. ++.++|.||+
T Consensus 151 ~~~~~~d~~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividp 198 (477)
T cd02759 151 LGYDEPDWENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDP 198 (477)
T ss_pred CCCCchhhhcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECC
No 450
>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=33.87 E-value=35 Score=37.61 Aligned_cols=112 Identities=17% Similarity=0.137 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHHhc------CCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeee--cCCC
Q 007917 220 GLEAAVEATADFLNKA------VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTY--WGAV 291 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~a------~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~--~g~~ 291 (585)
..+++++.+++.|++. ++.+++.|..... ....+.+|...+|.|-+.+...-.. .+...|.. .|..
T Consensus 80 sWdeAl~~ia~~l~~~~~~~g~~~i~~~~g~~~~~--~~~~~~r~~~~~Gs~~~~~~~~~c~----~~~~~~~~~~~g~~ 153 (523)
T cd02757 80 SWDEALDTIADKIRALRKENEPHKIMLHRGRYGHN--NSILYGRFTKMIGSPNNISHSSVCA----ESEKFGRYYTEGGW 153 (523)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCceEEEEeCCCCCc--cchHHHHHHHHhCcCCCcCCcchhh----hHHHHHHHHHhCCC
Confidence 3567788888877643 2335556654332 2226788999999875533211100 00001100 0111
Q ss_pred CCHHHHHHhhhCCEEEEeCCccCCcccccc---c---ccCCCcceEEEcCCcee
Q 007917 292 SSSFCGEIVESADAYVFVGPIFNDYSSVGY---S---LLIKKEKAIIVQPHRVT 339 (585)
Q Consensus 292 ~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~---~---~~~~~~~~i~id~~~~~ 339 (585)
+. ...-+.+||+||++|+...+.....+ . ...++.++|.||+....
T Consensus 154 ~~--~~~D~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~~~gakliviDPr~s~ 205 (523)
T cd02757 154 DY--NSYDYANAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVDPRLSN 205 (523)
T ss_pred CC--CCcchhcCcEEEEECCChHHhCCCcHHHHHHHHHHHCCCEEEEECCCCCh
Confidence 10 11236899999999977543321111 1 11246799999987654
No 451
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=33.82 E-value=1.6e+02 Score=34.88 Aligned_cols=96 Identities=11% Similarity=0.001 Sum_probs=58.2
Q ss_pred cEEEEeCCcchH-H---HHHHHHHhhhcCCc---EEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhh--ceeEEEE
Q 007917 91 GACVVTFTVGGL-S---VLNAIAGAYSENLP---VICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQA--ITCSQAV 161 (585)
Q Consensus 91 ~v~~~t~GpG~~-n---~~~gl~~A~~~~~P---ll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~k~~~~ 161 (585)
.++++..|=|++ | ..-++-=|..-+.| +|+|+-+.... ..+.. ++... .....+..+. +.-+...
T Consensus 343 ~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g-~tT~~--~~~~s---~~~~sd~Ak~~giP~~~VD 416 (924)
T PRK09404 343 VLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIG-FTTSP--PDDRS---TPYCTDVAKMVQAPIFHVN 416 (924)
T ss_pred eEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEE-EeeCH--HHhcc---chhHHHHHeecCCcEEEEc
Confidence 577777786664 2 44444446667777 99988764322 11100 00000 1111223333 3344555
Q ss_pred ecCcchhHHHHHHHHHHhhhcCCcEEEEecC
Q 007917 162 VNNLGDAHELIDTAISTALKESKPVYISISC 192 (585)
Q Consensus 162 v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~ 192 (585)
=.+++.+...++.|++.+....|||.|++=.
T Consensus 417 G~D~~AV~~a~~~A~e~~r~g~gPvlIE~~t 447 (924)
T PRK09404 417 GDDPEAVVFATRLALEYRQKFKKDVVIDLVC 447 (924)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCcCEEEEEEE
Confidence 6688899999999999999999999999853
No 452
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=33.78 E-value=1.1e+02 Score=30.06 Aligned_cols=73 Identities=15% Similarity=0.174 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhc--CCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh
Q 007917 223 AAVEATADFLNKA--VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (585)
Q Consensus 223 ~~~~~~~~~l~~a--~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l 300 (585)
..+..|+..|..- ..-++++|..- .+...+.++|++.|.+.++.-. +| |.+.+. ....+
T Consensus 56 ~~L~~Aa~~i~~i~~~~~Il~Vstr~---~~~~~V~k~A~~tg~~~i~~Rw----~p-----------GtlTN~-~~~~f 116 (249)
T PTZ00254 56 EKLKLAARVIAAIENPADVVVVSSRP---YGQRAVLKFAQYTGASAIAGRF----TP-----------GTFTNQ-IQKKF 116 (249)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEcCH---HHHHHHHHHHHHhCCeEECCcc----cC-----------CCCCCc-ccccc
Confidence 4566666666543 33477776543 4788999999999988876321 11 222221 12345
Q ss_pred hhCCEEEEeCCccC
Q 007917 301 ESADAYVFVGPIFN 314 (585)
Q Consensus 301 ~~aD~vl~lG~~~~ 314 (585)
.++|+||++..+-+
T Consensus 117 ~~P~llIV~Dp~~d 130 (249)
T PTZ00254 117 MEPRLLIVTDPRTD 130 (249)
T ss_pred CCCCEEEEeCCCcc
Confidence 78999999986544
No 453
>PRK13685 hypothetical protein; Provisional
Probab=33.66 E-value=2e+02 Score=29.40 Aligned_cols=79 Identities=14% Similarity=0.029 Sum_probs=51.6
Q ss_pred CcEEEEEcCchhH-------------hHHHHHHhCCCeEEEEEeCCceeeeeeecCCC--CCCCCCCCHHHHHHHhcCCC
Q 007917 458 KRVIACIGDGSFQ-------------EISTMIRCGQRSIIFLINNGGYTIEVEIHDGP--YNVIKNWDYTGLVNAIHNGE 522 (585)
Q Consensus 458 ~~vv~v~GDGsf~-------------eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~--~~~~~~~d~~~la~a~G~~~ 522 (585)
..+|.++-||.-. ....+.+.+++|-+|=+-+...++. .++. ...+..--..++|+.-|+
T Consensus 194 ~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~~g~~~---~~g~~~~~~~d~~~L~~iA~~tgG-- 268 (326)
T PRK13685 194 PARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTPYGSVE---INGQRQPVPVDDESLKKIAQLSGG-- 268 (326)
T ss_pred CCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCCCCCcC---cCCceeeecCCHHHHHHHHHhcCC--
Confidence 4578889998643 1233456788888877765433321 0111 111222347889999999
Q ss_pred CCccEEEecCHHHHHHHHHHhh
Q 007917 523 GKCWTAKVRSEDELTEAMKTAT 544 (585)
Q Consensus 523 ~~~~~~~v~~~~eL~~al~~a~ 544 (585)
.++.+++.+||++++++.-
T Consensus 269 ---~~~~~~~~~~L~~if~~I~ 287 (326)
T PRK13685 269 ---EFYTAASLEELRAVYATLQ 287 (326)
T ss_pred ---EEEEcCCHHHHHHHHHHHH
Confidence 8999999999999998764
No 454
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=33.55 E-value=6.3e+02 Score=27.12 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=26.8
Q ss_pred HHHHHHHHhc-CCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccC
Q 007917 226 EATADFLNKA-VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS 271 (585)
Q Consensus 226 ~~~~~~l~~a-~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~ 271 (585)
+.+++...+. .+|++....+.. ..++.+++.+..|+|++.++.
T Consensus 391 ~~l~~~~~~~~~KPvv~~~~gg~---~~~~~~~~L~~~Gip~f~~p~ 434 (447)
T TIGR02717 391 KGIIEGAKKSNEKPVVAGFMGGK---SVDPAKRILEENGIPNYTFPE 434 (447)
T ss_pred HHHHHHHHhcCCCcEEEEecCCc---cHHHHHHHHHhCCCCccCCHH
Confidence 4445555555 889977654322 334556656677999988653
No 455
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=33.53 E-value=1e+02 Score=32.58 Aligned_cols=41 Identities=10% Similarity=-0.006 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeE
Q 007917 227 ATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (585)
Q Consensus 227 ~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~ 267 (585)
++...+...+|++||.|.+....+..+.+.+..+..|+.+.
T Consensus 13 ~l~~~~~~~~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~ 53 (398)
T cd08178 13 YALLDLKGKKRAFIVTDRFMVKLGYVDKVIDVLKRRGVETE 53 (398)
T ss_pred HHHHHhcCCCeEEEEcChhHHhCccHHHHHHHHHHCCCeEE
Confidence 33333445689999998877665677778887777776654
No 456
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=33.50 E-value=1.4e+02 Score=31.31 Aligned_cols=43 Identities=7% Similarity=0.159 Sum_probs=29.0
Q ss_pred HHHHHHHHHh-cCCCEEEeCcccchhchHHHHHHHHHHhCCCeE
Q 007917 225 VEATADFLNK-AVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (585)
Q Consensus 225 ~~~~~~~l~~-a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~ 267 (585)
++++.+.+.+ .+|++|+.|.+....+..+.+.+..+..++.+.
T Consensus 11 l~~l~~~~~~~g~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~ 54 (386)
T cd08191 11 RRQLPRLAARLGSRALIVTDERMAGTPVFAELVQALAAAGVEVE 54 (386)
T ss_pred HHHHHHHHHHcCCeEEEEECcchhhcchHHHHHHHHHHcCCeEE
Confidence 3444444443 278999998877655677778877777777654
No 457
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=33.12 E-value=73 Score=34.43 Aligned_cols=90 Identities=20% Similarity=0.141 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHH-hCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHH
Q 007917 220 GLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA-TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGE 298 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~-l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~ 298 (585)
..+++++++++.|++.+.-+.+.|.+....+....+.+|++. ++.+-+... +...+.. .+... +..+. ...
T Consensus 70 sWdeAl~~ia~~l~~~~~~~~~~~s~~~~~e~~~~~~~~~~~~~gs~~~~~~-~~~~~~~----~~~~~-~~~~~--~~~ 141 (472)
T cd02771 70 SWNEALDVAAARLKEAKDKVGGIGSPRASNESNYALQKLVGAVLGTNNVDHR-ARRLIAE----ILRNG-PIYIP--SLR 141 (472)
T ss_pred cHHHHHHHHHHHHHHhhhhEEEEecCCCChHHHHHHHHHHHHhcCCChhhcc-hhhhhhh----hhccc-CCCCC--CHH
Confidence 357889999999988763344444433222344567788875 665443211 1110000 00000 11111 123
Q ss_pred HhhhCCEEEEeCCccCCcc
Q 007917 299 IVESADAYVFVGPIFNDYS 317 (585)
Q Consensus 299 ~l~~aD~vl~lG~~~~~~~ 317 (585)
-+.++|+||++|+.+.+..
T Consensus 142 di~~ad~il~~G~n~~~~~ 160 (472)
T cd02771 142 DIESADAVLVLGEDLTQTA 160 (472)
T ss_pred HHHhCCEEEEEeCCccccc
Confidence 4579999999998865443
No 458
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=32.92 E-value=42 Score=33.66 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEcc
Q 007917 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMP 270 (585)
Q Consensus 221 ~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~ 270 (585)
++.++++++++|+++++.|++.|.|... ..|+|-+-+.
T Consensus 5 ~~~~l~~l~~~i~~~~~ivvlTGAGiS~------------~SGIPdFR~~ 42 (285)
T PRK05333 5 DPAALDALQDFVERHPRLFVLTGAGIST------------DSGIPDYRDR 42 (285)
T ss_pred cHHHHHHHHHHHHhCCcEEEEeCCcccc------------ccCCCcccCC
Confidence 4567888999999999999999999864 3577766544
No 459
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=32.90 E-value=2.8e+02 Score=28.78 Aligned_cols=63 Identities=14% Similarity=0.178 Sum_probs=44.8
Q ss_pred cCCCCCCCCcc-ccccccCCcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC----CCCeEEecCc
Q 007917 7 MGSTGQPGSAP-APVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE----PELNLVGCCN 73 (585)
Q Consensus 7 ~~~~~~~~~~~-~~~~~~~~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~----~~i~~i~~~~ 73 (585)
|-..|...++| +|.-+. ..-+.+++.|+++||+.++-+-|-....+.+.+.+. ..|+|+.-..
T Consensus 15 LrPlT~~~PKPllpI~gk----Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~~~~~I~y~~e~~ 82 (358)
T COG1208 15 LRPLTDDRPKPLLPIAGK----PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEGLGVRITYVVEKE 82 (358)
T ss_pred ccccccCCCcccceeCCc----cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcccccCCceEEEecCC
Confidence 33456666777 555543 456999999999999999999888888888888652 2455554444
No 460
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=32.88 E-value=83 Score=33.19 Aligned_cols=42 Identities=10% Similarity=0.141 Sum_probs=33.4
Q ss_pred hHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEE
Q 007917 444 SVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLI 487 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~ 487 (585)
++.+++||++| +.++...+-=.||. .|..+.-.++|+++++.
T Consensus 61 A~~~aiGAs~a--GaRa~TaTSg~Gl~lm~E~l~~aa~~~lPiVi~~~ 106 (390)
T PRK08366 61 AMAACIGASAA--GARAFTATSAQGLALMHEMLHWAAGARLPIVMVDV 106 (390)
T ss_pred HHHHHHHHHhh--CCCeEeeeCcccHHHHhhHHHHHHhcCCCEEEEEe
Confidence 67899999997 55677777666776 77888888999888886
No 461
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=32.83 E-value=1.4e+02 Score=25.39 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=29.4
Q ss_pred ccEEEEeCCcch-HHHHHHHHHhhhcCCcEEEEeCCCCCc
Q 007917 90 VGACVVTFTVGG-LSVLNAIAGAYSENLPVICIVGGPNSN 128 (585)
Q Consensus 90 ~~v~~~t~GpG~-~n~~~gl~~A~~~~~Pll~I~g~~~~~ 128 (585)
.-++++.+-+|- ...+..+..|...++|+|.||+.....
T Consensus 48 ~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~ 87 (128)
T cd05014 48 GDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNST 87 (128)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 345655566664 448888888999999999999976554
No 462
>PRK06091 membrane protein FdrA; Validated
Probab=32.68 E-value=7.2e+02 Score=27.52 Aligned_cols=50 Identities=20% Similarity=0.269 Sum_probs=35.6
Q ss_pred CCcccHHHHHHHHHHH--cCCCEEEecCCC---------ChHHHHHhhhcCCCCeEEecCc
Q 007917 24 ASVGTLGRHLARRLVE--IGAKDVFSVPGD---------FNLTLLDHLIAEPELNLVGCCN 73 (585)
Q Consensus 24 ~~~~~~a~~i~~~L~~--~Gv~~vFg~PG~---------~~~~l~~al~~~~~i~~i~~~~ 73 (585)
++.-+++..+...+.+ .|++++.++=|. ....+++.|.++++.+.|..--
T Consensus 200 SQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly~ 260 (555)
T PRK06091 200 GASGTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAFVS 260 (555)
T ss_pred eCcHHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEEEE
Confidence 4445667778888877 556788887555 4567788887778888876655
No 463
>PLN02522 ATP citrate (pro-S)-lyase
Probab=32.47 E-value=6.1e+02 Score=28.51 Aligned_cols=95 Identities=12% Similarity=0.139 Sum_probs=61.2
Q ss_pred ccchHHHHHHHhhhcCCCcEEEEEcC-chhH--hHHHHHH---hCCCeEEEEEeCCc--eeee-eeecCCCCCCCCC---
Q 007917 441 IGWSVGATLGYAQAAKDKRVIACIGD-GSFQ--EISTMIR---CGQRSIIFLINNGG--YTIE-VEIHDGPYNVIKN--- 508 (585)
Q Consensus 441 mG~~lpaAiGaalA~p~~~vv~v~GD-Gsf~--eL~ta~~---~~lpv~ivV~NN~~--~~~~-~~~~~~~~~~~~~--- 508 (585)
.|..+.-.+-.-...|+-++|++.|. |.-. ++..+++ .+.||+.++.--.. .+-. ..-|.+ .+..
T Consensus 206 ~g~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e~~f~ea~~~a~~~KPVVa~kaGrsa~~~~~~aa~gHtG---Aiag~~~ 282 (608)
T PLN02522 206 PGSTLSDHVLRFNNIPQIKMIVVLGELGGRDEYSLVEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAG---AKSGGDM 282 (608)
T ss_pred CCCCHHHHHHHHhcCCCCCEEEEEEecCchhHHHHHHHHHHhcCCCCEEEEeccCCCccCcccccccccc---ccccCCC
Confidence 35556666665555688899999999 7666 5555443 46788877764443 1211 111222 1112
Q ss_pred ---CCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh
Q 007917 509 ---WDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG 545 (585)
Q Consensus 509 ---~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~ 545 (585)
-.|.+..+..|+ .++++++||-+++++.++
T Consensus 283 ~ta~~k~aAlr~aGv-------~vv~s~~El~~~~~~~~~ 315 (608)
T PLN02522 283 ESAQAKNKALKDAGA-------IVPTSFEALEAAIKETFE 315 (608)
T ss_pred ccHHHHHHHHHHCCC-------eEeCCHHHHHHHHHHHHH
Confidence 237788888886 668999999999988876
No 464
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=32.46 E-value=52 Score=38.21 Aligned_cols=107 Identities=14% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhh
Q 007917 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVE 301 (585)
Q Consensus 222 ~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~ 301 (585)
+.+++++++.|++++ .|..++.... +..-.+++|++.+|.+.+..- ++- ....-.-+.-.+ |.. .....+-+.
T Consensus 297 e~A~deA~e~lk~~~--aI~~S~~~TN-EE~YllqKLar~lgtnnvD~~-aR~-~~~~~~~l~~~~-G~~-~t~sl~DI~ 369 (819)
T PRK08493 297 EKAFKEAVEAFKEAK--AIKFNSFITN-EEALILQRLKKKFGLKLINEE-ALK-FQQFLKVFSEVS-GKS-YSANLEDIK 369 (819)
T ss_pred HHHHHHHHHHHhhCC--EEEecCCCCH-HHHHHHHHHHHHhCCCCccch-hhh-hhHHHHHHHHhc-CCC-CCCCHHHHh
Q ss_pred hCCEEEEeCCccCCcccccccccC-----CCcceEEEcC
Q 007917 302 SADAYVFVGPIFNDYSSVGYSLLI-----KKEKAIIVQP 335 (585)
Q Consensus 302 ~aD~vl~lG~~~~~~~~~~~~~~~-----~~~~~i~id~ 335 (585)
++|+||++|+.+.+....-+..+. .+.++|.+|+
T Consensus 370 ~AD~IlviGsN~~e~hPvl~~~I~~A~k~~gaklIvidP 408 (819)
T PRK08493 370 TSDFVVVAGSALKTDNPLLRYAINNALKMNKASGLYFHP 408 (819)
T ss_pred hCCEEEEECCChhhhCHHHHHHHHHHHHhCCCeEEEEec
No 465
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=32.35 E-value=88 Score=36.71 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=26.5
Q ss_pred HhhhCCEEEEeCCccCCccccccccc------CCCcceEEEcCCcee
Q 007917 299 IVESADAYVFVGPIFNDYSSVGYSLL------IKKEKAIIVQPHRVT 339 (585)
Q Consensus 299 ~l~~aD~vl~lG~~~~~~~~~~~~~~------~~~~~~i~id~~~~~ 339 (585)
-+.+||+||++|+...+.....+..+ .++.++|.||+....
T Consensus 203 Di~~a~~il~~G~Np~~~~p~~~~~i~~a~~~~~G~kiiviDPr~t~ 249 (830)
T PRK13532 203 DIEAADAFVLWGSNMAEMHPILWSRVTDRRLSNPDVKVAVLSTFEHR 249 (830)
T ss_pred HHHhCCEEEEECCCchhcCcHHHHHHHHHHhcCCCCeEEEECCCCCc
Confidence 45899999999988654432222111 135689999986543
No 466
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=32.10 E-value=1e+02 Score=31.89 Aligned_cols=41 Identities=10% Similarity=0.199 Sum_probs=27.3
Q ss_pred HHHHHHHHHh-cCCCEEEeCcccchhchHHHHHHHHHHhCCCe
Q 007917 225 VEATADFLNK-AVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (585)
Q Consensus 225 ~~~~~~~l~~-a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv 266 (585)
++++.+.+.+ .+|++|+.|.+... +..+.+.+..+..++.+
T Consensus 11 ~~~l~~~~~~~~~r~livt~~~~~~-~~~~~v~~~L~~~~i~~ 52 (351)
T cd08170 11 LDELGEYLARLGKRALIIADEFVLD-LVGAKIEESLAAAGIDA 52 (351)
T ss_pred HHHHHHHHHHhCCeEEEEECHHHHH-HHHHHHHHHHHhCCCeE
Confidence 3344444443 48999999887765 56777777777777765
No 467
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=31.80 E-value=1.4e+02 Score=31.21 Aligned_cols=43 Identities=21% Similarity=0.293 Sum_probs=29.1
Q ss_pred HHHHHHHHHh--cCCCEEEeCcccchhchHHHHHHHHHHhCCCeE
Q 007917 225 VEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (585)
Q Consensus 225 ~~~~~~~l~~--a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~ 267 (585)
++++.+.+.+ .+|++|+.|......+..+.+.+..+..++.+.
T Consensus 16 l~~l~~~l~~~g~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~ 60 (377)
T cd08188 16 LKLAGRYARRLGAKKVLLVSDPGVIKAGWVDRVIESLEEAGLEYV 60 (377)
T ss_pred HHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEE
Confidence 4455555543 478999988877655567778877777776554
No 468
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=31.68 E-value=44 Score=34.51 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=27.5
Q ss_pred HHHHhhhCCEEEEeCCccCCcccccccc-cCCCcceEEEcCCce
Q 007917 296 CGEIVESADAYVFVGPIFNDYSSVGYSL-LIKKEKAIIVQPHRV 338 (585)
Q Consensus 296 ~~~~l~~aD~vl~lG~~~~~~~~~~~~~-~~~~~~~i~id~~~~ 338 (585)
+.+.+.+||++|+||+++.-..-..+.. ......+|.|+.++.
T Consensus 199 a~~~~~~aDllLVIGTSL~V~Paa~l~~~a~~~~pvviIN~e~~ 242 (349)
T PTZ00410 199 VHHDIPEAELLLIIGTSLQVHPFALLACVVPKDVPRVLFNLERV 242 (349)
T ss_pred HHHHHHhCCEEEEECcCCcccCHHHHHHHHhcCCCEEEECcccc
Confidence 4567789999999999886544322221 123456777777654
No 469
>PRK10586 putative oxidoreductase; Provisional
Probab=31.46 E-value=1.5e+02 Score=31.01 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=23.7
Q ss_pred HHHHHHHHHHh--cCCCEEEeCcccchhchHHHHHHHHHHhCC
Q 007917 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (585)
Q Consensus 224 ~~~~~~~~l~~--a~rpvIi~G~g~~~~~a~~~l~~lae~l~~ 264 (585)
.++++.+.+.+ .+|++||.|..... ...+.+.+..+..++
T Consensus 21 a~~~l~~~~~~~g~~~~lvv~g~~~~~-~~~~~~~~~l~~~~~ 62 (362)
T PRK10586 21 SIDHLHDFFTDEQLSRAVWIYGERAIA-AAQPYLPPAFELPGA 62 (362)
T ss_pred HHHHHHHHHHhcCCCeEEEEEChHHHH-HHHHHHHHHHHHcCC
Confidence 45666677765 47889888876543 233445444444443
No 470
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=31.21 E-value=1.6e+02 Score=31.21 Aligned_cols=142 Identities=13% Similarity=0.097 Sum_probs=74.1
Q ss_pred CCHHHHHHHHHhhC-----CCCCEEEecCCccccccccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEc
Q 007917 391 LRVNVLFKHIQDML-----SGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIG 465 (585)
Q Consensus 391 ~~~~~~~~~L~~~l-----~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~G 465 (585)
..+..++..+.+.+ ....++++..++.-. . ++.||++|.+.|.||++++-++-. .+-.|+++.|
T Consensus 168 ~~~~~I~~~~~~~~~~~~l~gk~vlITgG~T~E~-I------D~VR~isN~SSG~~G~aiA~~l~~----~Ga~V~~v~~ 236 (399)
T PRK05579 168 AEPEEIVAAAERALSPKDLAGKRVLITAGPTREP-I------DPVRYITNRSSGKMGYALARAAAR----RGADVTLVSG 236 (399)
T ss_pred CCHHHHHHHHHHHhhhcccCCCEEEEeCCCcccc-c------cceeeeccCCcchHHHHHHHHHHH----CCCEEEEeCC
Confidence 45666777666554 334455543333221 1 345689999999898887666533 3557888877
Q ss_pred CchhH--------------hHHHHHHhCCCeEEEEEeCCceeeee-------eecCCC-CC--CC-CCCCHHHHHHHhcC
Q 007917 466 DGSFQ--------------EISTMIRCGQRSIIFLINNGGYTIEV-------EIHDGP-YN--VI-KNWDYTGLVNAIHN 520 (585)
Q Consensus 466 DGsf~--------------eL~ta~~~~lpv~ivV~NN~~~~~~~-------~~~~~~-~~--~~-~~~d~~~la~a~G~ 520 (585)
+.+.. ++..+++...+-.=+++||.+..-.. .+..+. .. .+ +++|.-+-.....-
T Consensus 237 ~~~~~~~~~~~~~dv~~~~~~~~~v~~~~~~~DilI~~Aav~d~~~~~~~~~Kikk~~~~~~l~L~~~pdIl~~l~~~~~ 316 (399)
T PRK05579 237 PVNLPTPAGVKRIDVESAQEMLDAVLAALPQADIFIMAAAVADYRPATVAEGKIKKGEGELTLELVPNPDILAEVAALKD 316 (399)
T ss_pred CccccCCCCcEEEccCCHHHHHHHHHHhcCCCCEEEEcccccccccccccccCccCCCCCceEEEEeCcHHHHHHHhccC
Confidence 75431 55555554444344567777654311 111111 01 11 56776664443211
Q ss_pred CCC-CccEEEecCHHHHHHHHHHhh
Q 007917 521 GEG-KCWTAKVRSEDELTEAMKTAT 544 (585)
Q Consensus 521 ~~~-~~~~~~v~~~~eL~~al~~a~ 544 (585)
.. -+-++..++-+.++.|.++..
T Consensus 317 -~~~~~VGFaaEt~~~~~~A~~kl~ 340 (399)
T PRK05579 317 -KRPFVVGFAAETGDVLEYARAKLK 340 (399)
T ss_pred -CCCEEEEEccCCchHHHHHHHHHH
Confidence 00 024566666555555655443
No 471
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=31.16 E-value=82 Score=27.43 Aligned_cols=27 Identities=30% Similarity=0.543 Sum_probs=16.6
Q ss_pred HHHHHHHcCCCEEEecCCCChHHHHHhh
Q 007917 33 LARRLVEIGAKDVFSVPGDFNLTLLDHL 60 (585)
Q Consensus 33 i~~~L~~~Gv~~vFg~PG~~~~~l~~al 60 (585)
..+.|++.|++.+|+ ||+....+.+.|
T Consensus 100 ~~~~L~~~Gv~~vf~-pgt~~~~i~~~l 126 (128)
T cd02072 100 VEKRFKEMGFDRVFA-PGTPPEEAIADL 126 (128)
T ss_pred HHHHHHHcCCCEEEC-cCCCHHHHHHHH
Confidence 345577777777776 566555555554
No 472
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=30.76 E-value=78 Score=32.63 Aligned_cols=95 Identities=11% Similarity=0.038 Sum_probs=52.7
Q ss_pred HHHHHHHHHcCCCEEEec--CCCChHHH--HHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcc-hHHHH
Q 007917 31 RHLARRLVEIGAKDVFSV--PGDFNLTL--LDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVG-GLSVL 105 (585)
Q Consensus 31 ~~i~~~L~~~Gv~~vFg~--PG~~~~~l--~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG-~~n~~ 105 (585)
+.+++.|.+.++++||-+ -++.+... -..+.+..++.+.. ....-+.-......+...++++.|-.| ..+.+
T Consensus 33 ~~~~~~l~~~~~~~I~~~g~GsS~~aa~~~~~~~~k~~~i~v~~---~~~~~~~~~~~~~~~~~~lvI~iS~SGeT~e~i 109 (340)
T PRK11382 33 HAIVEEMVKRDIDRIYFVACGSPLNAAQTAKHLADRFSDLQVYA---ISGWEFCDNTPYRLDDRCAVIGVSDYGKTEEVI 109 (340)
T ss_pred HHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHHcCCCeEE---eccHHHHhcCCcCCCCCCEEEEEcCCCCCHHHH
Confidence 447788888888865444 33322221 11123323444322 122222222222333344555544444 45689
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCc
Q 007917 106 NAIAGAYSENLPVICIVGGPNSN 128 (585)
Q Consensus 106 ~gl~~A~~~~~Pll~I~g~~~~~ 128 (585)
.++..|...+.|+|.||+...+.
T Consensus 110 ~al~~ak~~Ga~~I~IT~~~~S~ 132 (340)
T PRK11382 110 KALELGRACGALTAAFTKRADSP 132 (340)
T ss_pred HHHHHHHHcCCeEEEEECCCCCh
Confidence 99999999999999999986554
No 473
>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=30.75 E-value=61 Score=36.50 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHhcC------CCEEEeCcccch--hchHHHHHHHHHHhCCCeEEcc-CCccCCCCCCCCceeeecCC
Q 007917 220 GLEAAVEATADFLNKAV------KPVLVGGPNIRV--AKAQKAFIELADATGYPIAIMP-SGKGLVPEHHPHFIGTYWGA 290 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~a~------rpvIi~G~g~~~--~~a~~~l~~lae~l~~Pv~~t~-~gkg~~~~~hp~~~G~~~g~ 290 (585)
..+++++.+++.|++.+ ...+..|.+... ......+.+|++.+|.++.... .+.+....-++..+|.. .
T Consensus 79 sWDeAl~~ia~kl~~i~~~~G~~ai~~~~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~c~~~~~~~~~~~~G~~--~ 156 (617)
T cd02770 79 SWDEALDTIASELKRIIEKYGNEAIYVNYGTGTYGGVPAGRGAIARLLNLTGGYLNYYGTYSWAQITTATPYTYGAA--A 156 (617)
T ss_pred cHHHHHHHHHHHHHHHHHHhCchheEeeccccccCccccchHHHHHHHHhcCCccCCCCCccHhHHhhhhceEEecC--C
Confidence 35778888888876533 223444544321 1234566778777775432110 01111111223334431 1
Q ss_pred CCCHHHHHHhhhCCEEEEeCCccCCcccc---cccc----cCCCcceEEEcCCceee
Q 007917 291 VSSSFCGEIVESADAYVFVGPIFNDYSSV---GYSL----LIKKEKAIIVQPHRVTV 340 (585)
Q Consensus 291 ~~~~~~~~~l~~aD~vl~lG~~~~~~~~~---~~~~----~~~~~~~i~id~~~~~~ 340 (585)
.+. ...-+.+||+||++|+........ .+.. ..++.++|.||+.....
T Consensus 157 ~~~--~~~D~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr~t~t 211 (617)
T cd02770 157 SGS--SLDDLKDSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPRYTDT 211 (617)
T ss_pred CCC--CHHHHhcCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCCCCcc
Confidence 111 123456899999999875433221 0111 12456899999876543
No 474
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=30.59 E-value=1.9e+02 Score=29.12 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=31.0
Q ss_pred CCcEEEEEcCchhH-hHHHHHHh---CCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHhcC
Q 007917 457 DKRVIACIGDGSFQ-EISTMIRC---GQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHN 520 (585)
Q Consensus 457 ~~~vv~v~GDGsf~-eL~ta~~~---~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~ 520 (585)
-|-+|.+.|.|+-+ .|..+.+. +..|..||-|+. +...+|+.+|+
T Consensus 90 ~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn~~-------------------~~~~lA~~~gI 138 (286)
T PRK06027 90 KRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHD-------------------DLRSLVERFGI 138 (286)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEcCh-------------------hHHHHHHHhCC
Confidence 35678888888888 77766554 455666666664 45566888887
No 475
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=30.35 E-value=1.9e+02 Score=30.33 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=25.0
Q ss_pred HHHHHHHh-cCCCEEEeCcccc-hhchHHHHHHHHHHhCCCeE
Q 007917 227 ATADFLNK-AVKPVLVGGPNIR-VAKAQKAFIELADATGYPIA 267 (585)
Q Consensus 227 ~~~~~l~~-a~rpvIi~G~g~~-~~~a~~~l~~lae~l~~Pv~ 267 (585)
++.+.+.+ .+|++|+.|.... ..+..+.+.+..+..|+-+.
T Consensus 19 ~l~~~~~~~~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~ 61 (382)
T cd08187 19 ELGKELKKYGKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVV 61 (382)
T ss_pred HHHHHHHHhCCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEE
Confidence 33343433 5899999886543 33556777777677666543
No 476
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=30.25 E-value=1.6e+02 Score=28.32 Aligned_cols=113 Identities=17% Similarity=0.109 Sum_probs=65.0
Q ss_pred ccCcccccc-hHHHHHHHhhhcCCCcEEEEEcCchhH--hHHHHHHhCCCeEEEEEeCCceeeee-eecCCCCC------
Q 007917 435 QMQYGSIGW-SVGATLGYAQAAKDKRVIACIGDGSFQ--EISTMIRCGQRSIIFLINNGGYTIEV-EIHDGPYN------ 504 (585)
Q Consensus 435 ~~~~g~mG~-~lpaAiGaalA~p~~~vv~v~GDGsf~--eL~ta~~~~lpv~ivV~NN~~~~~~~-~~~~~~~~------ 504 (585)
..|-|+.|= ...++||++||..+++|+++.-|-+.- +|..-.+.++=..+|=.=++.-.+.+ .+.+..+.
T Consensus 8 TSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~~nL~lLP 87 (272)
T COG2894 8 TSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRLENLFLLP 87 (272)
T ss_pred ecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhccccCCceEecc
Confidence 345566665 578899999999999999999999987 55544443332111111111111111 11121111
Q ss_pred --------CCCCCCHHHHHHH---hcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEE
Q 007917 505 --------VIKNWDYTGLVNA---IHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCF 553 (585)
Q Consensus 505 --------~~~~~d~~~la~a---~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~v 553 (585)
.+.+-.+.++.+. .+. .|+.+++|.-++.-.+-|+. -.++..|
T Consensus 88 AsQtrdKdalt~E~v~~vv~eL~~~~f-----DyIi~DsPAGIE~G~~~A~~-~Ad~AiV 141 (272)
T COG2894 88 ASQTRDKDALTPEGVKKVVNELKAMDF-----DYIIIDSPAGIEQGFKNAVY-FADEAIV 141 (272)
T ss_pred cccccCcccCCHHHHHHHHHHHHhcCC-----CEEEecCcchHHHHHHhhhh-ccceEEE
Confidence 1222234444433 445 89999999999998888874 2344433
No 477
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=29.91 E-value=43 Score=33.71 Aligned_cols=50 Identities=12% Similarity=0.257 Sum_probs=39.0
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh-c--CCCCeEEEEEEcC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG-E--QKDSLCFIEVFVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~-~--~~~gp~vIeV~v~ 559 (585)
++..+|.+++|+-.-- ...+|..+..+..++++++. . .+.||++||+.+|
T Consensus 113 dfqavdi~~ia~pv~k-----wavtv~epalvp~v~qkafhlmrs~rpgpvlidlp~d 165 (592)
T COG3960 113 DFQAVDIEAIAKPVSK-----WAVTVREPALVPRVLQQAFHLMRSGRPGPVLIDLPFD 165 (592)
T ss_pred hhhhhhHHHhhhhhhh-----hhhhhcchhhhHHHHHHHHHHHhcCCCCCeEEecccc
Confidence 3467788998887765 67788888888889998876 2 3568999988776
No 478
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=29.58 E-value=81 Score=31.61 Aligned_cols=45 Identities=16% Similarity=0.070 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEE
Q 007917 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (585)
Q Consensus 222 ~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~ 268 (585)
.+.+++++++|.++++ +.+.|.|....-+.....+|. ++|.++..
T Consensus 127 ~~~l~~~~~~i~~A~~-I~i~G~G~S~~~A~~l~~~l~-~~g~~~~~ 171 (292)
T PRK11337 127 VDEFHRAARFFYQARQ-RDLYGAGGSAAIARDVQHKFL-RIGVRCQA 171 (292)
T ss_pred HHHHHHHHHHHHcCCe-EEEEEecHHHHHHHHHHHHHh-hCCCeEEE
Confidence 4678999999999988 567787765432333333343 56776654
No 479
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=29.30 E-value=2.1e+02 Score=29.99 Aligned_cols=33 Identities=21% Similarity=0.141 Sum_probs=23.8
Q ss_pred cCCCEEEeCcccch-hchHHHHHHHHHHhCCCeE
Q 007917 235 AVKPVLVGGPNIRV-AKAQKAFIELADATGYPIA 267 (585)
Q Consensus 235 a~rpvIi~G~g~~~-~~a~~~l~~lae~l~~Pv~ 267 (585)
.+|++|+.|..... .+..+.+.+..+..++.+.
T Consensus 26 ~kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~ 59 (383)
T cd08186 26 ISKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYV 59 (383)
T ss_pred CCEEEEEcCccHHhhcChHHHHHHHHHHcCCeEE
Confidence 47899998877543 4556788888787787554
No 480
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=29.27 E-value=57 Score=26.40 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=19.3
Q ss_pred hhCCEEEEeCCccCCcccccccccCCCcceEEEcCCc
Q 007917 301 ESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHR 337 (585)
Q Consensus 301 ~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~ 337 (585)
.++|+||++|+++..-.. ..+.|++.+|...
T Consensus 39 ~dAeLviV~G~sipnd~~------l~GKkv~i~d~~~ 69 (103)
T COG3925 39 NDAELVIVFGSSIPNDSA------LNGKKVWIGDIER 69 (103)
T ss_pred CcccEEEEeccccCCCcc------ccCceEEEecHHH
Confidence 489999999987653221 1233566666544
No 481
>PRK08285 cobH precorrin-8X methylmutase; Reviewed
Probab=29.18 E-value=1.2e+02 Score=28.94 Aligned_cols=52 Identities=21% Similarity=0.303 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcC-CCEEEeCcccchhchHHHHHHHHHH-hCCCeEEccCCcc
Q 007917 223 AAVEATADFLNKAV-KPVLVGGPNIRVAKAQKAFIELADA-TGYPIAIMPSGKG 274 (585)
Q Consensus 223 ~~~~~~~~~l~~a~-rpvIi~G~g~~~~~a~~~l~~lae~-l~~Pv~~t~~gkg 274 (585)
.++-++.+++.+.+ +|.+|+|--+..-++.+.=.+|.+. .++|.++...-||
T Consensus 138 TAL~~l~~li~~g~~~PalVIG~PVGFV~a~ESKe~L~~~~~~vP~I~~~GrkG 191 (208)
T PRK08285 138 TALFRLLEMLDAGAPRPAAILGFPVGFVGAAESKDALAADSRGVPYLIVRGRRG 191 (208)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEeCCccccHHHHHHHHHhccCCCCEEEEecCCC
Confidence 45678888888764 8999999888765565555555542 4999999776654
No 482
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=29.14 E-value=1.1e+02 Score=35.97 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=27.1
Q ss_pred HHhhhCCEEEEeCCccCCcccccccc----c--CCCcceEEEcCCcee
Q 007917 298 EIVESADAYVFVGPIFNDYSSVGYSL----L--IKKEKAIIVQPHRVT 339 (585)
Q Consensus 298 ~~l~~aD~vl~lG~~~~~~~~~~~~~----~--~~~~~~i~id~~~~~ 339 (585)
+-+.++|+||++|+...+.....|.. . .++.++|.||+....
T Consensus 202 ~Di~~ad~il~~G~Np~~~~p~~~~~i~~a~~~~~GakliviDPr~t~ 249 (830)
T TIGR01706 202 DDFEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKVKVVVLSTFTHR 249 (830)
T ss_pred hHHhhCCEEEEEcCCcchhCCHHHHHHHHHHhccCCCEEEEECCCCCc
Confidence 34589999999998865543322211 1 135689999986543
No 483
>PF00384 Molybdopterin: Molybdopterin oxidoreductase; InterPro: IPR006656 This domain is found in a number of molybdopterin-containing oxidoreductases, tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where a single domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor []. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E 3DMR_A 4DMR_A 1H5N_C 1E5V_A ....
Probab=29.13 E-value=25 Score=37.39 Aligned_cols=114 Identities=18% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh---cCCC--EEEeCcccch-hchHHHHHHHHHHhCCCeEEccCCccCCCCCCC--CceeeecCCCCC
Q 007917 222 EAAVEATADFLNK---AVKP--VLVGGPNIRV-AKAQKAFIELADATGYPIAIMPSGKGLVPEHHP--HFIGTYWGAVSS 293 (585)
Q Consensus 222 ~~~~~~~~~~l~~---a~rp--vIi~G~g~~~-~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp--~~~G~~~g~~~~ 293 (585)
+++++.+++.|++ ...| +++.+.+... .+..-.+.+|+..++-|-+......+..+..+. .+-+...+....
T Consensus 23 deAl~~ia~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 102 (432)
T PF00384_consen 23 DEALDEIAEKLKEIIDKYGPDSIAFFGSGGGTSNEEWYLLQRFARALGSPNTNNHGSQCDTCMASAAEAFGGDFVGGPAF 102 (432)
T ss_dssp HHHHHHHHHHHHHHHHHCTGGGEEEEEETTTSSHHHHHHHHHHHHHTTHHEEEEEEEGGGCTTHHHHHHHSSHSHTSSSC
T ss_pred HHHHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhheecccccCccc
Q ss_pred HHHHHHhhhCCEEEEeCCccCCccccc-----ccccCCCcceEEEcC
Q 007917 294 SFCGEIVESADAYVFVGPIFNDYSSVG-----YSLLIKKEKAIIVQP 335 (585)
Q Consensus 294 ~~~~~~l~~aD~vl~lG~~~~~~~~~~-----~~~~~~~~~~i~id~ 335 (585)
.....-+.++|+||++|+......... ......+.++|.||+
T Consensus 103 ~~~~~D~~~ad~il~~G~n~~~~~~~~~~~~~~~~~~~g~k~v~vdP 149 (432)
T PF00384_consen 103 GNPLEDIENADVILIWGANPAESHPHLNARFRKAARKRGAKLVVVDP 149 (432)
T ss_dssp CSHHHGGGH-SEEEEES--HHHHSHHHHHHHHHHHHHCTSEEEEEES
T ss_pred ccccceeeccceEEEcccCccccccccccccccccccCCcceEEEEe
No 484
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=28.93 E-value=98 Score=26.40 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEE
Q 007917 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (585)
Q Consensus 224 ~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~ 268 (585)
.++++++.|.++++ +++.|.|... .....+....+.++.++..
T Consensus 2 ~i~~~~~~i~~~~~-i~i~g~g~s~-~~a~~~~~~l~~~~~~~~~ 44 (139)
T cd05013 2 ALEKAVDLLAKARR-IYIFGVGSSG-LVAEYLAYKLLRLGKPVVL 44 (139)
T ss_pred HHHHHHHHHHhCCE-EEEEEcCchH-HHHHHHHHHHHHcCCceEE
Confidence 47789999998865 8888888654 3566666666777766655
No 485
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=28.93 E-value=1.7e+02 Score=30.51 Aligned_cols=43 Identities=14% Similarity=0.281 Sum_probs=29.5
Q ss_pred HHHHHHHHHh--cCCCEEEeCcccchhchHHHHHHHHHHhCCCeE
Q 007917 225 VEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (585)
Q Consensus 225 ~~~~~~~l~~--a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~ 267 (585)
++++.+.+.+ .+|++|+.|......+..+.+.+..+..++.+.
T Consensus 11 l~~l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~ 55 (370)
T cd08551 11 IEKLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVV 55 (370)
T ss_pred HHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEE
Confidence 4556666654 478999998877655667777777777666543
No 486
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=28.90 E-value=87 Score=33.76 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=52.2
Q ss_pred cCchhH-hHHHHHHhCCCeEEEEEeC--CceeeeeeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEecCH----HHHH
Q 007917 465 GDGSFQ-EISTMIRCGQRSIIFLINN--GGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSE----DELT 537 (585)
Q Consensus 465 GDGsf~-eL~ta~~~~lpv~ivV~NN--~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~----~eL~ 537 (585)
|..|.+ .+.-+-.+++||+.||--= +..+..+.+| ..+.+.||.-.-+.+-- --|....+++. +++.
T Consensus 77 GeLSAlNGIAGsYAE~vpVihIVG~Pnt~~q~t~~LLH----HTLG~gDF~vf~rm~k~--vsc~~a~I~~~e~A~~~ID 150 (561)
T KOG1184|consen 77 GELSALNGIAGAYAENVPVIHIVGVPNTNDQGTQRLLH----HTLGNGDFTVFHRMFKK--VTCYTAMINDIEDAPEQID 150 (561)
T ss_pred chhhhhcccchhhhhcCCEEEEECCCCcccccccchhe----eecCCCchHHHHHHHHh--hhhHHhhhcCHhhhHHHHH
Confidence 444445 7777888899988888421 1122212222 12455677665555432 01244445554 5667
Q ss_pred HHHHHhhhcCCCCeEEEEEEcCCC
Q 007917 538 EAMKTATGEQKDSLCFIEVFVHKD 561 (585)
Q Consensus 538 ~al~~a~~~~~~gp~vIeV~v~~~ 561 (585)
.+|+.++. ..+|+-|+|+++--
T Consensus 151 ~aI~~~~~--~~rPVYi~iP~n~~ 172 (561)
T KOG1184|consen 151 KAIRTALK--ESKPVYIGVPANLA 172 (561)
T ss_pred HHHHHHHH--hcCCeEEEeecccc
Confidence 77777764 78999999998743
No 487
>cd02771 MopB_NDH-1_NuoG2-N7 MopB_NDH-1_NuoG2-N7: The second domain of the NuoG subunit (with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups in this domain
Probab=28.79 E-value=90 Score=33.73 Aligned_cols=44 Identities=27% Similarity=0.201 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCC
Q 007917 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (585)
Q Consensus 222 ~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~P 265 (585)
.+.++++++.|.++++++|+.|.+.........+..|+..+|-.
T Consensus 252 ~~~i~~lA~~l~~a~~~~i~~g~g~~~~~~~~al~~L~~~~G~~ 295 (472)
T cd02771 252 KEKAARIAARLTGAKKPLIVSGTLSGSLELIKAAANLAKALKRR 295 (472)
T ss_pred HHHHHHHHHHHhcCCCcEEEECCCcCcHHHHHHHHHHHHHhcCC
Confidence 35688999999999999999999875445677777777777654
No 488
>PF06711 DUF1198: Protein of unknown function (DUF1198); InterPro: IPR009587 This family consists of several bacterial proteins of around 150 residues in length which are specific to Escherichia coli, Salmonella species and Yersinia pestis. The function of this family is unknown.
Probab=28.78 E-value=44 Score=29.27 Aligned_cols=31 Identities=13% Similarity=0.185 Sum_probs=27.4
Q ss_pred CEEEeCcccchhchHHHHHHHHHHhCCCeEE
Q 007917 238 PVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (585)
Q Consensus 238 pvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~ 268 (585)
.|+|+|.....++...++++|+++|+++.+-
T Consensus 11 VVFivGfRvLtSdtR~A~~~Ls~rL~I~Pv~ 41 (148)
T PF06711_consen 11 VVFIVGFRVLTSDTRRAIRRLSERLNIKPVY 41 (148)
T ss_pred HhheeeEEecccchHHHHHHHHHHhCCCcee
Confidence 4788999999999999999999999987664
No 489
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=28.36 E-value=1.6e+02 Score=30.36 Aligned_cols=41 Identities=22% Similarity=0.278 Sum_probs=26.8
Q ss_pred HHHHHHHHHh--cCCCEEEeCcccchhchHHHHHHHHHHhCCCe
Q 007917 225 VEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPI 266 (585)
Q Consensus 225 ~~~~~~~l~~--a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv 266 (585)
++++.+.+.+ .+|.+|+.|....... .+.+.+..+..++.+
T Consensus 11 l~~l~~~~~~~~~~~~livtd~~~~~~~-~~~v~~~l~~~~i~~ 53 (348)
T cd08175 11 LERLPEILKEFGYKKALIVADENTYAAA-GKKVEALLKRAGVVV 53 (348)
T ss_pred HHHHHHHHHhcCCCcEEEEECCcHHHHH-HHHHHHHHHHCCCee
Confidence 3344444443 4788899887776543 577777777777755
No 490
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=28.34 E-value=2e+02 Score=25.06 Aligned_cols=94 Identities=12% Similarity=0.009 Sum_probs=51.2
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHhhh-cCCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcch-HH-HHHH
Q 007917 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLI-AEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGG-LS-VLNA 107 (585)
Q Consensus 31 ~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~-~~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~-~n-~~~g 107 (585)
+.+++.|.+..-=+++|.=++. ....... +-.++-.+.+....+.-|+---+...+..-+++..++.|. .. ....
T Consensus 4 ~~~a~~~~~~~~i~~~G~G~s~--~~a~e~~~kl~e~~~i~~~~~~~~e~~hg~~~~~~~~~~vi~is~~g~t~~~~~~~ 81 (153)
T cd05009 4 KELAEKLKEAKSFYVLGRGPNY--GTALEGALKLKETSYIHAEAYSAGEFKHGPIALVDEGTPVIFLAPEDRLEEKLESL 81 (153)
T ss_pred HHHHHHHhccCcEEEEcCCCCH--HHHHHHHHHHHHHHhhcceeccHHHhccChhhhccCCCcEEEEecCChhHHHHHHH
Confidence 5677888886666667764433 3332221 1112333455555444444333444554433333344443 33 5556
Q ss_pred HHHhhhcCCcEEEEeCCCC
Q 007917 108 IAGAYSENLPVICIVGGPN 126 (585)
Q Consensus 108 l~~A~~~~~Pll~I~g~~~ 126 (585)
+..+...+.|+++|++...
T Consensus 82 ~~~~~~~~~~vi~it~~~~ 100 (153)
T cd05009 82 IKEVKARGAKVIVITDDGD 100 (153)
T ss_pred HHHHHHcCCEEEEEecCCc
Confidence 6677788999999999754
No 491
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=28.14 E-value=3.4e+02 Score=27.04 Aligned_cols=94 Identities=15% Similarity=0.211 Sum_probs=54.6
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHH--HHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcch-HHHHHH
Q 007917 31 RHLARRLVEIGAKDVFSVPGDFNLT--LLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGG-LSVLNA 107 (585)
Q Consensus 31 ~~i~~~L~~~Gv~~vFg~PG~~~~~--l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~-~n~~~g 107 (585)
+.+++.|.+..--++||+-++.... +...|.+ .++.+... ++......+. ...+..-++++-+-.|. -+.+..
T Consensus 131 ~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~-~g~~~~~~-~d~~~~~~~~--~~~~~~Dl~I~iS~sG~t~~~~~~ 206 (292)
T PRK11337 131 HRAARFFYQARQRDLYGAGGSAAIARDVQHKFLR-IGVRCQAY-DDAHIMLMSA--ALLQEGDVVLVVSHSGRTSDVIEA 206 (292)
T ss_pred HHHHHHHHcCCeEEEEEecHHHHHHHHHHHHHhh-CCCeEEEc-CCHHHHHHHH--hcCCCCCEEEEEeCCCCCHHHHHH
Confidence 4567777777777888886543221 2222333 35555443 3322222221 22333345555555554 457778
Q ss_pred HHHhhhcCCcEEEEeCCCCCc
Q 007917 108 IAGAYSENLPVICIVGGPNSN 128 (585)
Q Consensus 108 l~~A~~~~~Pll~I~g~~~~~ 128 (585)
+..|...+.|+|+||+.....
T Consensus 207 ~~~ak~~g~~ii~IT~~~~s~ 227 (292)
T PRK11337 207 VELAKKNGAKIICITNSYHSP 227 (292)
T ss_pred HHHHHHCCCeEEEEeCCCCCh
Confidence 888999999999999976554
No 492
>TIGR00509 bisC_fam molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.
Probab=28.08 E-value=1.3e+02 Score=34.82 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=27.1
Q ss_pred HhhhCCEEEEeCCccCCcccccc--------cc----cCCCcceEEEcCCceee
Q 007917 299 IVESADAYVFVGPIFNDYSSVGY--------SL----LIKKEKAIIVQPHRVTV 340 (585)
Q Consensus 299 ~l~~aD~vl~lG~~~~~~~~~~~--------~~----~~~~~~~i~id~~~~~~ 340 (585)
.+.+||+||++|+...+.....| .. ..++.|+|.||+.....
T Consensus 164 ~~~~a~~il~~G~Np~~t~~~~~~~~~~~~~~~~~~a~~~G~klIvIDPr~t~t 217 (770)
T TIGR00509 164 ILENSKVLVLWGADPLKTSQIAWGIPDHGGYEYLERLKAKGKRVISIDPVRTET 217 (770)
T ss_pred HHhcCCEEEEeCCCHHHhCccccccCCcchHHHHHHHHHcCCEEEEEcCCCCcc
Confidence 36899999999987544322111 11 12457999999976543
No 493
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=27.99 E-value=3.8e+02 Score=25.15 Aligned_cols=81 Identities=9% Similarity=0.067 Sum_probs=52.5
Q ss_pred hHHHHHHHhhh-----cC-CCcEEEEEcCchhH-------hH--HHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCC
Q 007917 444 SVGATLGYAQA-----AK-DKRVIACIGDGSFQ-------EI--STMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKN 508 (585)
Q Consensus 444 ~lpaAiGaalA-----~p-~~~vv~v~GDGsf~-------eL--~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~ 508 (585)
+..-|||.++- .+ +.+||.+.=||... ++ ..|..+++++-.|=+-.. ..
T Consensus 92 ~TadAi~~av~rl~~~~~a~~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytIgiG~~----------------d~ 155 (191)
T cd01455 92 HTVEATEFAIKELAAKEDFDEAIVIVLSDANLERYGIQPKKLADALAREPNVNAFVIFIGSL----------------SD 155 (191)
T ss_pred cHHHHHHHHHHHHHhcCcCCCcEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEEEecCC----------------CH
Confidence 33356666552 11 35799999999864 32 224567777655443221 11
Q ss_pred CCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh
Q 007917 509 WDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG 545 (585)
Q Consensus 509 ~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~ 545 (585)
.....+|+.=|+ +++++.+.++|++.+++-+.
T Consensus 156 ~~l~~iA~~tgG-----~~F~A~d~~~L~~iy~~I~~ 187 (191)
T cd01455 156 EADQLQRELPAG-----KAFVCMDTSELPHIMQQIFT 187 (191)
T ss_pred HHHHHHHhCCCC-----cEEEeCCHHHHHHHHHHHHH
Confidence 235677888888 99999999999999988763
No 494
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=27.96 E-value=1e+02 Score=29.65 Aligned_cols=155 Identities=14% Similarity=0.131 Sum_probs=76.6
Q ss_pred cEEEEeCCcchHHHHHHHHHhhh-cCCcEEEEeCCCCCccCCCccceeeccCCCCh---HHHHHHhhhc----eeEEEEe
Q 007917 91 GACVVTFTVGGLSVLNAIAGAYS-ENLPVICIVGGPNSNDYGTNRILHHTIGLPDF---TQELRCFQAI----TCSQAVV 162 (585)
Q Consensus 91 ~v~~~t~GpG~~n~~~gl~~A~~-~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~----~k~~~~v 162 (585)
=.|-.-+.-|.|-.+..+.+|.. ..+|+-++.==+..+..... .+. .+-..+++.. +.+-..-
T Consensus 26 ELC~~La~GG~TPSyG~~k~a~~~~~ipv~~MIRPRgGdFvY~~---------~E~~iM~~DI~~~~~lG~~GVV~G~lt 96 (241)
T COG3142 26 ELCDALAEGGLTPSYGVIKEAVELSKIPVYVMIRPRGGDFVYSD---------DELEIMLEDIRLARELGVQGVVLGALT 96 (241)
T ss_pred ehhhccccCCCCCCHHHHHHHHhhcCCceEEEEecCCCCcccCh---------HHHHHHHHHHHHHHHcCCCcEEEeeec
Confidence 35555566677778888888776 89998877632222211110 011 0112223221 1111111
Q ss_pred cCcchhHHHHHHHHHHhhhcCCcEEEEecCCCCCCCCCCCCC-----CCCCccCCCCCCChhhHHHHHHHHHHHHHhc-C
Q 007917 163 NNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFAR-----DPVPFFLAPKVSNQLGLEAAVEATADFLNKA-V 236 (585)
Q Consensus 163 ~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-~ 236 (585)
.+-+--...+++-+..|. +=+|.+.--+|+.. .+.+.. ......+..... ....+-++.+.+++..+ .
T Consensus 97 ~dg~iD~~~le~Li~aA~--gL~vTFHrAFD~~~--d~~~ale~li~~Gv~RILTsGg~--~sa~eg~~~l~~li~~a~g 170 (241)
T COG3142 97 ADGNIDMPRLEKLIEAAG--GLGVTFHRAFDECP--DPLEALEQLIELGVERILTSGGK--ASALEGLDLLKRLIEQAKG 170 (241)
T ss_pred CCCccCHHHHHHHHHHcc--CCceeeehhhhhcC--CHHHHHHHHHHCCCcEEecCCCc--CchhhhHHHHHHHHHHhcC
Confidence 111111244444444432 34666666666632 111100 001111111111 12234567788888776 7
Q ss_pred CCEEEeCcccchhchHHHHHHHHHHhCC
Q 007917 237 KPVLVGGPNIRVAKAQKAFIELADATGY 264 (585)
Q Consensus 237 rpvIi~G~g~~~~~a~~~l~~lae~l~~ 264 (585)
|+.|++|+|++. +-+..|..++|+
T Consensus 171 ri~Im~GaGV~~----~N~~~l~~~tg~ 194 (241)
T COG3142 171 RIIIMAGAGVRA----ENIAELVLLTGV 194 (241)
T ss_pred CEEEEeCCCCCH----HHHHHHHHhcCc
Confidence 999999999974 567778777774
No 495
>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=27.92 E-value=1.6e+02 Score=32.72 Aligned_cols=116 Identities=12% Similarity=0.084 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHh------cCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCC
Q 007917 220 GLEAAVEATADFLNK------AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSS 293 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~------a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~ 293 (585)
..+++++.+++.|++ .+...++.|.+......... .++....+..-.......+ -..-+...+|. +....
T Consensus 75 SWdEAl~~ia~kl~~~~~~~G~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~--~~~~~ 150 (567)
T cd02765 75 TWDEALDTIADKLTEAKREYGGKSILWMSSSGDGAILSYLR-LALLGGGLQDALTYGIDTG-VGQGFNRVTGG--GFMPP 150 (567)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCceEEEEecCCCcccccHHH-HHHhhCCCCcccccCcccc-cccCccceecc--ccccC
Q ss_pred HHHHHHhhhCCEEEEeCCccCCcccccccccC----CCcceEEEcCCcee
Q 007917 294 SFCGEIVESADAYVFVGPIFNDYSSVGYSLLI----KKEKAIIVQPHRVT 339 (585)
Q Consensus 294 ~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~----~~~~~i~id~~~~~ 339 (585)
.....-+.++|+||++|+...+.....+..+. ++.++|.||+....
T Consensus 151 ~~~~~D~~~ad~il~~G~Np~~s~~~~~~~~~~a~~~GakliviDPr~s~ 200 (567)
T cd02765 151 TNEITDWVNAKTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDPVYST 200 (567)
T ss_pred CCCHhHHhcCcEEEEECCChHHccchhHHHHHHHHHcCCeEEEECCCCCc
No 496
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=27.55 E-value=4.7e+02 Score=24.38 Aligned_cols=93 Identities=16% Similarity=0.137 Sum_probs=48.9
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcchHHHHH
Q 007917 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLN 106 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~ 106 (585)
...++.|++.+++.||+.|+.+-|-.... ...++.+..+.+..|.. .+....++-+...+-+.+....
T Consensus 33 ~e~a~~vld~a~~~gv~~iitLgG~~~~~----~~trp~V~~~at~~el~--------~~l~~~g~~~~~~~g~i~G~~g 100 (188)
T TIGR00162 33 YELVNAIIDVAKKYGARMIYTLGGYGVGK----LVEEPYVYGAATSPELV--------EELKEHGVKFREPGGGIIGASG 100 (188)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCcCCC----CCCCCceEEEeCCHHHH--------HHHHhcCCeeecCCCccccHHH
Confidence 35789999999999999999997754321 11123333333322221 1111112222111111111112
Q ss_pred H-HHHhhhcCCcEEEEeCCCCCccCC
Q 007917 107 A-IAGAYSENLPVICIVGGPNSNDYG 131 (585)
Q Consensus 107 g-l~~A~~~~~Pll~I~g~~~~~~~~ 131 (585)
- +..|...++|-++|.+..+.....
T Consensus 101 lLl~~a~~~gi~ai~L~~e~p~y~pD 126 (188)
T TIGR00162 101 LLLGVSELEGIPGACLMGETPGYMID 126 (188)
T ss_pred HHHHHHHHCCCCeEEEEEeCCCCCCC
Confidence 2 224677889989888888776444
No 497
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=27.46 E-value=3.4e+02 Score=27.51 Aligned_cols=92 Identities=14% Similarity=0.105 Sum_probs=51.1
Q ss_pred HHHHHHHHc-CCCEEEecCCCChHHHHHhhhc---CCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCc-chHHHHH
Q 007917 32 HLARRLVEI-GAKDVFSVPGDFNLTLLDHLIA---EPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTV-GGLSVLN 106 (585)
Q Consensus 32 ~i~~~L~~~-Gv~~vFg~PG~~~~~l~~al~~---~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~Gp-G~~n~~~ 106 (585)
.+++.|.+. +-=++||.-.+. .+...+.. .-+...+...+.. ..+ ......+..-++++.|-. -..+++.
T Consensus 38 ~~~~~l~~a~~~I~i~G~G~S~--~~a~~~~~~l~~~g~~~~~~~~~~-~~~--~~~~~~~~~d~~I~iS~sG~t~~~~~ 112 (326)
T PRK10892 38 LACEKMFWCKGKVVVMGMGKSG--HIGRKMAATFASTGTPSFFVHPGE-AAH--GDLGMVTPQDVVIAISNSGESSEILA 112 (326)
T ss_pred HHHHHHHhcCCeEEEEeCcHhH--HHHHHHHHHHhcCCceeEEeChHH-hhc--cccccCCCCCEEEEEeCCCCCHHHHH
Confidence 355666555 455666664333 33333321 1355555432221 111 111233334444444444 4566899
Q ss_pred HHHHhhhcCCcEEEEeCCCCCc
Q 007917 107 AIAGAYSENLPVICIVGGPNSN 128 (585)
Q Consensus 107 gl~~A~~~~~Pll~I~g~~~~~ 128 (585)
.+..|...++|+|+||+.....
T Consensus 113 ~~~~ak~~g~~vi~iT~~~~s~ 134 (326)
T PRK10892 113 LIPVLKRLHVPLICITGRPESS 134 (326)
T ss_pred HHHHHHHCCCcEEEEECCCCCc
Confidence 9999999999999999987665
No 498
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=27.45 E-value=2.4e+02 Score=26.76 Aligned_cols=73 Identities=18% Similarity=0.168 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHh-cCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhh
Q 007917 223 AAVEATADFLNK-AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVE 301 (585)
Q Consensus 223 ~~~~~~~~~l~~-a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~ 301 (585)
..+++|+..|.. ...-++++|..- .+.+.+.++|++.|.+.++.-.=. |.+.+... +...
T Consensus 53 ~~L~~A~~~i~~~~~~~ILfVgTk~---~~~~~v~k~A~~~g~~~v~~RWlg---------------G~LTN~~~-~~~~ 113 (204)
T PRK04020 53 ERIRIAAKFLSRYEPEKILVVSSRQ---YGQKPVQKFAEVVGAKAITGRFIP---------------GTLTNPSL-KGYI 113 (204)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCCH---HHHHHHHHHHHHhCCeeecCccCC---------------CcCcCcch-hccC
Confidence 456777777765 334466676543 477899999999999887642111 22222221 2234
Q ss_pred hCCEEEEeCCccC
Q 007917 302 SADAYVFVGPIFN 314 (585)
Q Consensus 302 ~aD~vl~lG~~~~ 314 (585)
.+|+||++...-+
T Consensus 114 ~Pdliiv~dp~~~ 126 (204)
T PRK04020 114 EPDVVVVTDPRGD 126 (204)
T ss_pred CCCEEEEECCccc
Confidence 8999999987544
No 499
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=26.95 E-value=3.4e+02 Score=26.91 Aligned_cols=17 Identities=18% Similarity=0.090 Sum_probs=14.9
Q ss_pred HHHHhhhcCCcEEEEeC
Q 007917 107 AIAGAYSENLPVICIVG 123 (585)
Q Consensus 107 gl~~A~~~~~Pll~I~g 123 (585)
.+.|+..-++|+|+|.-
T Consensus 252 T~~E~~a~g~P~i~i~~ 268 (279)
T TIGR03590 252 TSWERCCLGLPSLAICL 268 (279)
T ss_pred HHHHHHHcCCCEEEEEe
Confidence 38899999999999975
No 500
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=26.78 E-value=1.7e+02 Score=30.12 Aligned_cols=49 Identities=16% Similarity=0.336 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCcccchh----chHHHHHHHHHHhCCCeEEc
Q 007917 221 LEAAVEATADFLNKAVKPVLVGGPNIRVA----KAQKAFIELADATGYPIAIM 269 (585)
Q Consensus 221 ~~~~~~~~~~~l~~a~rpvIi~G~g~~~~----~a~~~l~~lae~l~~Pv~~t 269 (585)
.++.++++++++++-+--++|+|..=... -+......+.|++++|++|.
T Consensus 65 ~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 65 KEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 35678899999999998899999765432 24555566888999999984
Done!