Query 007917
Match_columns 585
No_of_seqs 238 out of 1364
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 13:41:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007917.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007917hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wvg_A PDC, pyruvate decarboxy 100.0 2E-94 6.8E-99 795.2 50.8 552 26-582 2-563 (568)
2 2vbi_A Pyruvate decarboxylase; 100.0 9.6E-94 3.3E-98 789.5 54.9 548 26-581 2-554 (566)
3 2vk8_A Pyruvate decarboxylase 100.0 1E-93 3.5E-98 789.2 46.9 545 25-579 2-561 (563)
4 1ovm_A Indole-3-pyruvate decar 100.0 6.4E-92 2.2E-96 773.5 44.8 543 24-579 2-551 (552)
5 2nxw_A Phenyl-3-pyruvate decar 100.0 2.1E-91 7.2E-96 769.6 46.0 535 25-582 19-564 (565)
6 2vbf_A Branched-chain alpha-ke 100.0 2.7E-91 9.4E-96 770.5 47.0 538 23-579 21-570 (570)
7 3eya_A Pyruvate dehydrogenase 100.0 3.1E-90 1.1E-94 758.3 41.9 512 26-564 2-533 (549)
8 4feg_A Pyruvate oxidase; carba 100.0 1.5E-88 5E-93 752.0 42.5 513 26-561 10-547 (603)
9 1ybh_A Acetolactate synthase, 100.0 1.1E-88 3.8E-93 752.2 41.2 516 25-564 10-562 (590)
10 1ozh_A ALS, acetolactate synth 100.0 2.2E-88 7.6E-93 745.7 41.1 512 27-563 11-546 (566)
11 1t9b_A Acetolactate synthase, 100.0 4.7E-88 1.6E-92 752.6 43.9 518 27-563 82-640 (677)
12 2pgn_A Cyclohexane-1,2-dione h 100.0 2.6E-88 8.9E-93 748.6 39.8 520 25-566 2-553 (589)
13 1q6z_A BFD, BFDC, benzoylforma 100.0 5.4E-87 1.9E-91 730.1 42.1 507 26-562 1-527 (528)
14 2uz1_A Benzaldehyde lyase; thi 100.0 4.2E-88 1.4E-92 744.1 33.0 516 26-566 3-552 (563)
15 2x7j_A 2-succinyl-5-enolpyruvy 100.0 2.2E-88 7.5E-93 751.3 30.3 533 26-578 30-598 (604)
16 1v5e_A Pyruvate oxidase; oxido 100.0 1.8E-86 6E-91 733.6 43.2 509 26-562 3-541 (590)
17 2iht_A Carboxyethylarginine sy 100.0 8E-87 2.7E-91 734.9 36.2 513 26-560 11-561 (573)
18 2pan_A Glyoxylate carboligase; 100.0 6E-86 2.1E-90 733.9 40.5 518 27-563 27-583 (616)
19 3lq1_A 2-succinyl-5-enolpyruvy 100.0 2.1E-86 7.1E-91 731.8 33.3 522 26-571 10-571 (578)
20 2c31_A Oxalyl-COA decarboxylas 100.0 9.3E-86 3.2E-90 726.1 33.5 524 26-575 9-562 (568)
21 2q28_A Oxalyl-COA decarboxylas 100.0 1.2E-85 4E-90 725.2 32.5 515 26-566 7-550 (564)
22 3hww_A 2-succinyl-5-enolpyruvy 100.0 1.8E-84 6.1E-89 713.2 27.7 513 27-576 8-555 (556)
23 3cf4_G Acetyl-COA decarboxylas 99.8 5.7E-21 1.9E-25 175.7 1.0 136 224-362 23-167 (170)
24 2c42_A Pyruvate-ferredoxin oxi 99.7 4.5E-18 1.5E-22 198.6 14.3 157 25-192 5-172 (1231)
25 1w85_A Pyruvate dehydrogenase 99.7 2.4E-16 8.1E-21 162.0 10.9 116 435-560 138-267 (368)
26 1yd7_A 2-keto acid:ferredoxin 99.7 1.1E-16 3.6E-21 166.9 8.4 167 23-197 19-192 (395)
27 3l84_A Transketolase; TKT, str 99.6 1.2E-15 4.2E-20 166.9 13.2 113 436-560 111-242 (632)
28 2bfd_A 2-oxoisovalerate dehydr 99.6 1E-15 3.5E-20 159.0 9.7 115 436-560 159-287 (400)
29 1qs0_A 2-oxoisovalerate dehydr 99.6 2.1E-15 7E-20 156.6 11.6 115 436-560 178-307 (407)
30 1ytl_A Acetyl-COA decarboxylas 99.6 6.7E-17 2.3E-21 147.4 0.3 104 225-334 24-142 (174)
31 2o1x_A 1-deoxy-D-xylulose-5-ph 99.6 2.4E-15 8.2E-20 166.2 12.5 167 391-565 56-294 (629)
32 3uk1_A Transketolase; structur 99.6 2.7E-15 9.4E-20 165.8 11.3 114 436-561 152-288 (711)
33 3kom_A Transketolase; rossmann 99.6 5.7E-15 1.9E-19 162.7 12.2 114 436-560 113-249 (663)
34 3m49_A Transketolase; alpha-be 99.6 9.8E-15 3.3E-19 161.1 12.5 114 437-561 138-274 (690)
35 1umd_A E1-alpha, 2-OXO acid de 99.6 3.8E-15 1.3E-19 153.6 8.5 111 440-560 149-269 (367)
36 2e6k_A Transketolase; structur 99.6 8.1E-15 2.8E-19 162.2 11.4 114 435-560 114-250 (651)
37 2o1s_A 1-deoxy-D-xylulose-5-ph 99.6 2.9E-14 1E-18 157.4 15.8 162 391-560 54-284 (621)
38 2ozl_A PDHE1-A type I, pyruvat 99.5 1.1E-14 3.8E-19 149.0 10.8 113 436-560 137-263 (365)
39 3mos_A Transketolase, TK; thia 99.5 1E-14 3.5E-19 160.0 10.7 111 436-560 118-242 (616)
40 2r8o_A Transketolase 1, TK 1; 99.5 1.5E-14 5E-19 160.6 11.8 116 435-561 110-248 (669)
41 1gpu_A Transketolase; transfer 99.5 1.7E-14 6E-19 160.1 11.5 114 436-560 113-250 (680)
42 1itz_A Transketolase; calvin c 99.5 2.1E-14 7.2E-19 159.4 12.1 114 436-560 124-261 (675)
43 1r9j_A Transketolase; domains, 99.5 9.9E-14 3.4E-18 153.8 12.2 114 436-560 113-250 (673)
44 3rim_A Transketolase, TK; TPP, 99.3 7.7E-12 2.6E-16 137.9 11.8 114 436-560 130-269 (700)
45 2yic_A 2-oxoglutarate decarbox 99.0 1.4E-10 4.9E-15 130.6 5.3 116 435-560 241-384 (868)
46 2qtc_A Pyruvate dehydrogenase 98.9 2.9E-09 9.9E-14 120.3 11.2 115 436-561 189-393 (886)
47 2xt6_A 2-oxoglutarate decarbox 98.9 9.9E-10 3.4E-14 126.9 5.2 115 436-560 487-629 (1113)
48 2jgd_A 2-oxoglutarate dehydrog 98.8 2.9E-09 9.8E-14 120.8 8.0 115 436-560 318-456 (933)
49 2c42_A Pyruvate-ferredoxin oxi 98.3 5.4E-06 1.8E-10 97.3 16.2 165 391-562 814-1072(1231)
50 3ahc_A Phosphoketolase, xylulo 98.1 8.2E-06 2.8E-10 90.7 9.7 116 437-562 173-322 (845)
51 1umd_B E1-beta, 2-OXO acid deh 95.7 0.14 4.8E-06 51.1 13.9 116 67-196 52-178 (324)
52 1w85_B Pyruvate dehydrogenase 95.6 0.1 3.5E-06 52.2 12.3 115 67-196 51-177 (324)
53 2bfd_B 2-oxoisovalerate dehydr 95.2 0.057 1.9E-06 54.5 9.3 169 67-265 68-248 (342)
54 2ozl_B PDHE1-B, pyruvate dehyd 94.7 0.24 8.4E-06 49.7 12.2 115 66-194 62-187 (341)
55 3mos_A Transketolase, TK; thia 94.4 0.53 1.8E-05 51.3 14.8 151 30-193 320-473 (616)
56 1qs0_B 2-oxoisovalerate dehydr 93.9 0.16 5.5E-06 51.1 8.8 115 67-195 53-178 (338)
57 1ozh_A ALS, acetolactate synth 93.7 0.29 1E-05 52.9 11.2 115 429-559 48-170 (566)
58 1ybh_A Acetolactate synthase, 93.6 0.4 1.4E-05 52.1 12.1 114 430-559 51-172 (590)
59 2iht_A Carboxyethylarginine sy 93.5 0.42 1.4E-05 51.7 12.0 146 394-559 16-171 (573)
60 2uz1_A Benzaldehyde lyase; thi 93.3 0.48 1.6E-05 51.2 12.0 114 430-559 42-164 (563)
61 2pan_A Glyoxylate carboligase; 93.0 0.63 2.2E-05 50.8 12.4 115 430-559 66-188 (616)
62 2o1s_A 1-deoxy-D-xylulose-5-ph 92.7 0.88 3E-05 49.7 13.1 152 26-194 318-480 (621)
63 2o1x_A 1-deoxy-D-xylulose-5-ph 92.4 0.61 2.1E-05 51.0 11.2 151 26-194 321-482 (629)
64 3eya_A Pyruvate dehydrogenase 92.2 0.47 1.6E-05 51.1 10.0 114 430-559 42-162 (549)
65 2r8o_A Transketolase 1, TK 1; 92.2 0.53 1.8E-05 51.9 10.5 170 67-265 403-577 (669)
66 1ik6_A Pyruvate dehydrogenase; 92.2 0.24 8.2E-06 50.4 7.2 117 66-196 98-225 (369)
67 1t9b_A Acetolactate synthase, 92.0 1.7 5.9E-05 47.9 14.4 148 394-559 86-242 (677)
68 2q28_A Oxalyl-COA decarboxylas 92.0 0.58 2E-05 50.5 10.4 116 430-559 46-169 (564)
69 2e6k_A Transketolase; structur 91.9 0.44 1.5E-05 52.3 9.4 118 66-193 397-516 (651)
70 1v5e_A Pyruvate oxidase; oxido 91.9 0.87 3E-05 49.4 11.6 114 430-560 44-165 (590)
71 3l84_A Transketolase; TKT, str 91.7 0.65 2.2E-05 50.6 10.4 116 67-194 383-501 (632)
72 3kom_A Transketolase; rossmann 91.6 0.96 3.3E-05 49.6 11.5 115 67-193 404-522 (663)
73 2c31_A Oxalyl-COA decarboxylas 91.5 0.61 2.1E-05 50.4 9.9 116 430-559 48-171 (568)
74 4feg_A Pyruvate oxidase; carba 91.4 0.38 1.3E-05 52.4 8.2 115 429-559 50-171 (603)
75 2nxw_A Phenyl-3-pyruvate decar 91.4 0.6 2E-05 50.4 9.6 106 444-559 71-186 (565)
76 2pgn_A Cyclohexane-1,2-dione h 91.3 0.49 1.7E-05 51.4 8.9 103 444-559 55-165 (589)
77 1pno_A NAD(P) transhydrogenase 91.2 0.12 4E-06 45.0 2.9 83 225-312 13-108 (180)
78 2x7j_A 2-succinyl-5-enolpyruvy 91.0 0.63 2.1E-05 50.7 9.5 115 430-560 70-199 (604)
79 1d4o_A NADP(H) transhydrogenas 90.9 0.086 3E-06 46.0 1.9 88 225-312 12-107 (184)
80 1djl_A Transhydrogenase DIII; 90.4 0.14 4.9E-06 45.7 2.9 87 226-312 36-130 (207)
81 2vbi_A Pyruvate decarboxylase; 90.3 0.92 3.2E-05 48.9 9.9 117 430-560 42-170 (566)
82 2fsv_C NAD(P) transhydrogenase 90.2 0.14 4.7E-06 45.7 2.5 79 225-312 36-131 (203)
83 1q6z_A BFD, BFDC, benzoylforma 90.0 0.56 1.9E-05 50.2 7.8 115 430-560 39-162 (528)
84 1r9j_A Transketolase; domains, 89.9 0.72 2.5E-05 50.8 8.7 116 67-193 403-521 (673)
85 3hww_A 2-succinyl-5-enolpyruvy 89.7 0.89 3E-05 48.9 9.1 103 444-559 58-171 (556)
86 2bru_C NAD(P) transhydrogenase 89.7 0.076 2.6E-06 46.4 0.5 84 224-312 19-115 (186)
87 2vk8_A Pyruvate decarboxylase 89.4 0.7 2.4E-05 49.8 8.0 120 430-560 43-171 (563)
88 1w85_A Pyruvate dehydrogenase 89.4 0.59 2E-05 47.4 7.0 114 77-196 147-269 (368)
89 2wvg_A PDC, pyruvate decarboxy 89.3 1.4 4.7E-05 47.6 10.3 118 430-560 42-170 (568)
90 1itz_A Transketolase; calvin c 88.7 1.7 5.9E-05 47.8 10.6 116 67-193 415-534 (675)
91 3uk1_A Transketolase; structur 88.7 1.3 4.3E-05 49.0 9.5 115 67-193 449-566 (711)
92 1s5p_A NAD-dependent deacetyla 88.5 0.48 1.6E-05 44.8 5.2 69 294-362 159-230 (235)
93 1gpu_A Transketolase; transfer 87.5 1.6 5.5E-05 48.1 9.4 116 67-193 410-529 (680)
94 3lq1_A 2-succinyl-5-enolpyruvy 86.8 1.5 5.1E-05 47.4 8.6 114 430-559 50-178 (578)
95 2hjh_A NAD-dependent histone d 86.7 0.92 3.1E-05 45.7 6.3 70 296-365 249-319 (354)
96 3m49_A Transketolase; alpha-be 86.1 2.2 7.5E-05 47.0 9.4 115 67-193 428-546 (690)
97 3pki_A NAD-dependent deacetyla 85.7 1.2 4.2E-05 44.3 6.5 71 295-365 199-272 (355)
98 1yc5_A NAD-dependent deacetyla 85.5 0.78 2.7E-05 43.7 4.9 69 295-363 173-244 (246)
99 3k35_A NAD-dependent deacetyla 85.1 1.3 4.5E-05 43.6 6.3 71 295-365 199-272 (318)
100 1yd7_A 2-keto acid:ferredoxin 85.1 1.2 4E-05 45.7 6.3 105 443-557 75-186 (395)
101 1qs0_A 2-oxoisovalerate dehydr 85.0 1.5 5.2E-05 45.0 7.1 112 78-195 187-308 (407)
102 2bfd_A 2-oxoisovalerate dehydr 84.2 1.9 6.5E-05 44.2 7.4 111 78-194 168-287 (400)
103 1ma3_A SIR2-AF2, transcription 83.9 0.88 3E-05 43.5 4.4 68 295-362 176-246 (253)
104 1o97_D Electron transferring f 83.9 1.8 6.3E-05 42.8 6.9 112 238-363 204-319 (320)
105 1m2k_A Silent information regu 83.6 1.2 4.3E-05 42.3 5.4 68 295-362 170-240 (249)
106 2ozl_A PDHE1-A type I, pyruvat 83.0 3 0.0001 42.1 8.1 110 78-195 146-264 (365)
107 3rim_A Transketolase, TK; TPP, 82.8 4 0.00014 44.9 9.7 156 26-193 374-553 (700)
108 4iao_A NAD-dependent histone d 82.0 2 7E-05 44.6 6.5 71 295-365 386-457 (492)
109 3riy_A NAD-dependent deacetyla 81.3 1.5 5.2E-05 42.3 5.1 65 295-359 205-272 (273)
110 3c2q_A Uncharacterized conserv 80.8 3.6 0.00012 40.0 7.2 97 261-363 236-339 (345)
111 1ik6_A Pyruvate dehydrogenase; 79.7 5 0.00017 40.6 8.4 95 444-555 110-218 (369)
112 1ovm_A Indole-3-pyruvate decar 79.4 4.9 0.00017 43.0 8.8 118 430-559 44-170 (552)
113 3glr_A NAD-dependent deacetyla 78.3 4.2 0.00014 39.4 7.1 70 297-366 192-267 (285)
114 1efv_A Electron transfer flavo 78.1 4.1 0.00014 40.2 7.0 112 238-364 199-314 (315)
115 1q1a_A HST2 protein; ternary c 77.9 1.9 6.5E-05 42.0 4.6 66 299-364 208-279 (289)
116 2vbf_A Branched-chain alpha-ke 75.8 4.8 0.00016 43.3 7.5 118 430-559 64-190 (570)
117 1q14_A HST2 protein; histone d 75.2 3.7 0.00013 41.3 5.8 66 299-364 216-287 (361)
118 1j8f_A SIRT2, sirtuin 2, isofo 73.8 4 0.00014 40.4 5.6 71 295-365 213-305 (323)
119 2ozl_B PDHE1-B, pyruvate dehyd 72.2 5.2 0.00018 39.9 6.1 97 444-557 74-184 (341)
120 1umd_A E1-alpha, 2-OXO acid de 70.9 8.5 0.00029 38.8 7.4 111 78-194 150-269 (367)
121 2l69_A Rossmann 2X3 fold prote 68.3 13 0.00046 28.6 6.1 58 510-574 17-74 (134)
122 1qs0_B 2-oxoisovalerate dehydr 64.6 12 0.00041 37.1 7.0 96 444-555 64-172 (338)
123 1efp_A ETF, protein (electron 61.6 11 0.00039 36.8 6.0 109 238-361 194-306 (307)
124 3i9v_3 NADH-quinone oxidoreduc 60.2 13 0.00045 41.5 7.0 82 220-315 321-404 (783)
125 2iv2_X Formate dehydrogenase H 60.0 5.7 0.00019 44.0 3.9 116 220-339 79-207 (715)
126 3jx9_A Putative phosphoheptose 58.7 33 0.0011 30.2 8.0 88 25-127 23-116 (170)
127 1tk9_A Phosphoheptose isomeras 54.4 46 0.0016 29.2 8.5 98 28-125 30-147 (188)
128 3trj_A Phosphoheptose isomeras 53.3 49 0.0017 29.8 8.6 102 27-128 33-154 (201)
129 2ivf_A Ethylbenzene dehydrogen 52.0 2.4 8.2E-05 48.9 -0.9 116 220-339 162-287 (976)
130 2xbl_A Phosphoheptose isomeras 51.1 76 0.0026 28.0 9.5 100 28-127 36-155 (198)
131 1umd_B E1-beta, 2-OXO acid deh 50.9 36 0.0012 33.3 7.8 94 444-554 63-170 (324)
132 2l69_A Rossmann 2X3 fold prote 50.6 42 0.0014 25.9 6.2 67 460-545 54-122 (134)
133 3u31_A SIR2A, transcriptional 48.7 8.8 0.0003 37.2 2.7 46 295-340 209-256 (290)
134 1e2b_A Enzyme IIB-cellobiose; 47.6 19 0.00065 28.9 4.2 33 236-268 4-36 (106)
135 1x92_A APC5045, phosphoheptose 47.5 58 0.002 28.9 8.1 98 28-126 33-151 (199)
136 1w85_B Pyruvate dehydrogenase 46.7 33 0.0011 33.6 6.7 94 444-554 62-169 (324)
137 2bfd_B 2-oxoisovalerate dehydr 46.2 29 0.00099 34.4 6.2 95 444-555 79-188 (342)
138 3nbm_A PTS system, lactose-spe 45.0 29 0.001 28.0 4.9 34 236-269 7-40 (108)
139 2yva_A DNAA initiator-associat 42.8 94 0.0032 27.4 8.7 100 28-127 29-148 (196)
140 2hy5_A Putative sulfurtransfer 42.6 70 0.0024 26.4 7.2 87 222-310 18-129 (130)
141 3da8_A Probable 5'-phosphoribo 40.5 1.1E+02 0.0036 28.1 8.6 85 460-569 16-108 (215)
142 3i9v_3 NADH-quinone oxidoreduc 39.1 1E+02 0.0035 34.3 9.8 93 223-317 488-594 (783)
143 4au1_A Precorrin-8X methylmuta 36.2 41 0.0014 31.1 4.9 53 222-274 158-212 (229)
144 3fxa_A SIS domain protein; str 36.0 60 0.002 28.9 6.2 47 222-269 31-77 (201)
145 3tqr_A Phosphoribosylglycinami 34.9 1.5E+02 0.0051 27.0 8.6 85 459-567 8-100 (215)
146 2yic_A 2-oxoglutarate decarbox 34.4 33 0.0011 38.6 4.8 98 91-194 278-384 (868)
147 3rot_A ABC sugar transporter, 33.5 3E+02 0.01 25.6 13.1 150 24-196 110-279 (297)
148 3l49_A ABC sugar (ribose) tran 33.2 2.9E+02 0.0099 25.4 11.2 91 24-114 105-216 (291)
149 2keg_A PLNK; protein, peptide, 31.9 17 0.00059 21.1 1.0 14 439-452 6-19 (32)
150 2xt6_A 2-oxoglutarate decarbox 31.8 41 0.0014 39.1 5.1 98 91-194 523-629 (1113)
151 3iz6_A 40S ribosomal protein S 31.5 1.7E+02 0.0057 28.2 8.5 73 223-314 60-134 (305)
152 1hi9_A Dciaa, dipeptide transp 31.4 43 0.0015 31.9 4.4 132 29-181 38-203 (274)
153 2i2w_A Phosphoheptose isomeras 31.4 93 0.0032 28.0 6.7 39 90-128 132-171 (212)
154 3lou_A Formyltetrahydrofolate 31.2 1.1E+02 0.0037 29.4 7.4 63 458-544 97-167 (292)
155 4ds3_A Phosphoribosylglycinami 30.8 93 0.0032 28.3 6.5 66 458-545 9-83 (209)
156 3n0v_A Formyltetrahydrofolate 30.8 1E+02 0.0034 29.6 7.0 63 458-544 92-162 (286)
157 1tvm_A PTS system, galactitol- 30.6 47 0.0016 26.8 4.0 31 236-266 22-53 (113)
158 2d00_A V-type ATP synthase sub 30.4 93 0.0032 25.0 5.7 32 509-545 12-43 (109)
159 2d1p_A TUSD, hypothetical UPF0 30.0 1.5E+02 0.005 25.0 7.2 86 222-309 30-140 (140)
160 3cvj_A Putative phosphoheptose 29.6 1.7E+02 0.0058 26.8 8.4 96 28-125 30-145 (243)
161 3sho_A Transcriptional regulat 29.6 2E+02 0.0068 24.8 8.6 88 31-126 30-125 (187)
162 3czc_A RMPB; alpha/beta sandwi 29.4 65 0.0022 25.8 4.7 30 236-265 19-49 (110)
163 1h0h_A Formate dehydrogenase ( 29.3 81 0.0028 36.1 7.1 114 221-338 88-224 (977)
164 1q16_A Respiratory nitrate red 29.3 42 0.0014 39.5 4.6 115 221-339 163-287 (1247)
165 3e7d_A COBH, precorrin-8X meth 29.1 77 0.0026 28.9 5.4 53 222-274 141-195 (212)
166 3o1l_A Formyltetrahydrofolate 29.1 1.2E+02 0.0042 29.2 7.4 63 458-544 107-177 (302)
167 2zkq_b 40S ribosomal protein S 28.8 1.3E+02 0.0045 28.9 7.3 73 223-314 56-130 (295)
168 2zxr_A Single-stranded DNA spe 28.7 1.2E+02 0.0043 32.8 8.0 103 221-336 58-161 (666)
169 3bch_A 40S ribosomal protein S 28.6 1.8E+02 0.0063 27.2 8.1 73 223-314 89-163 (253)
170 2iec_A Uncharacterized protein 28.6 45 0.0015 27.6 3.4 34 529-565 36-69 (131)
171 2b99_A Riboflavin synthase; lu 28.2 1.3E+02 0.0043 26.0 6.4 28 31-58 19-49 (156)
172 2xzm_B RPS0E; ribosome, transl 27.9 1.4E+02 0.0047 27.8 7.1 73 222-313 50-125 (241)
173 2nap_A Protein (periplasmic ni 27.4 7.8 0.00027 43.0 -1.8 112 222-335 82-205 (723)
174 1di0_A Lumazine synthase; tran 27.0 1.6E+02 0.0055 25.4 6.9 31 32-62 31-66 (158)
175 3s99_A Basic membrane lipoprot 26.7 2E+02 0.0067 28.4 8.6 41 31-71 76-116 (356)
176 2ioj_A Hypothetical protein AF 26.4 63 0.0022 27.0 4.3 33 236-271 74-106 (139)
177 2l2q_A PTS system, cellobiose- 26.2 80 0.0027 25.2 4.6 31 237-267 6-36 (109)
178 1jeo_A MJ1247, hypothetical pr 25.8 3.1E+02 0.011 23.4 9.6 47 221-269 26-72 (180)
179 1hqk_A 6,7-dimethyl-8-ribityll 25.8 98 0.0033 26.7 5.3 31 32-62 33-68 (154)
180 2e7z_A Acetylene hydratase AHY 25.6 14 0.00049 40.8 -0.1 105 222-335 81-198 (727)
181 1kqf_A FDH-N alpha, formate de 25.5 19 0.00066 41.5 1.0 115 220-338 125-263 (1015)
182 1rrm_A Lactaldehyde reductase; 25.0 60 0.0021 32.6 4.5 33 235-267 31-63 (386)
183 3bfj_A 1,3-propanediol oxidore 25.0 67 0.0023 32.2 4.9 33 235-267 33-67 (387)
184 3etn_A Putative phosphosugar i 24.9 1.1E+02 0.0039 27.6 6.1 68 223-309 42-113 (220)
185 3ahc_A Phosphoketolase, xylulo 24.8 7.5E+02 0.026 27.5 14.4 116 67-191 492-623 (845)
186 2r48_A Phosphotransferase syst 24.8 53 0.0018 26.4 3.2 66 250-336 20-85 (106)
187 1rvv_A Riboflavin synthase; tr 24.4 98 0.0034 26.6 5.0 31 32-62 33-68 (154)
188 2obx_A DMRL synthase 1, 6,7-di 24.2 1.3E+02 0.0046 25.9 5.9 28 31-58 31-62 (157)
189 3ox4_A Alcohol dehydrogenase 2 24.1 80 0.0027 31.7 5.2 45 224-268 18-64 (383)
190 2xhz_A KDSD, YRBH, arabinose 5 23.4 95 0.0032 27.0 5.1 44 224-268 37-80 (183)
191 1ma3_A SIR2-AF2, transcription 23.2 52 0.0018 31.0 3.4 26 223-248 3-28 (253)
192 2r4q_A Phosphotransferase syst 23.0 53 0.0018 26.4 2.9 66 250-336 20-85 (106)
193 1m3s_A Hypothetical protein YC 22.8 3.3E+02 0.011 23.4 8.6 46 222-269 24-69 (186)
194 2csu_A 457AA long hypothetical 22.7 1.7E+02 0.0057 30.1 7.5 137 29-192 76-238 (457)
195 3hbf_A Flavonoid 3-O-glucosylt 22.6 72 0.0025 32.9 4.6 27 91-123 347-373 (454)
196 4grd_A N5-CAIR mutase, phospho 22.5 1.3E+02 0.0045 26.3 5.4 82 18-123 16-98 (173)
197 3sho_A Transcriptional regulat 22.5 1.5E+02 0.0052 25.6 6.3 45 222-268 26-70 (187)
198 2qtc_A Pyruvate dehydrogenase 22.4 4.5E+02 0.015 29.5 11.3 172 69-265 566-752 (886)
199 3hyn_A Putative signal transdu 22.3 40 0.0014 30.0 2.1 26 460-485 83-115 (189)
200 3u5c_A 40S ribosomal protein S 22.2 2.5E+02 0.0087 26.2 7.7 73 223-314 55-129 (252)
201 1u7z_A Coenzyme A biosynthesis 22.1 65 0.0022 29.7 3.7 60 429-492 24-97 (226)
202 2xhz_A KDSD, YRBH, arabinose 5 21.9 3.4E+02 0.012 23.1 8.6 94 30-127 38-135 (183)
203 2kyr_A Fructose-like phosphotr 21.9 73 0.0025 25.8 3.5 67 250-337 23-90 (111)
204 3fxa_A SIS domain protein; str 21.4 2.3E+02 0.008 24.8 7.5 92 30-127 34-131 (201)
205 1ti3_A Thioredoxin H, PTTRXH1; 20.6 2E+02 0.0068 21.9 6.1 33 526-560 5-37 (113)
206 3ibs_A Conserved hypothetical 20.6 1.6E+02 0.0056 26.1 6.2 80 457-541 111-207 (218)
207 3zzx_A Thioredoxin; oxidoreduc 20.5 1.8E+02 0.006 22.7 5.7 44 528-575 3-46 (105)
208 3k35_A NAD-dependent deacetyla 20.3 88 0.003 30.5 4.4 30 219-248 28-57 (318)
209 1vim_A Hypothetical protein AF 20.2 2.2E+02 0.0075 25.1 6.9 86 31-127 38-128 (200)
210 1vim_A Hypothetical protein AF 20.1 4.4E+02 0.015 23.0 9.3 46 222-269 34-79 (200)
211 2yva_A DNAA initiator-associat 20.0 1.1E+02 0.0037 26.9 4.8 45 223-268 29-78 (196)
No 1
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=100.00 E-value=2e-94 Score=795.19 Aligned_cols=552 Identities=43% Similarity=0.749 Sum_probs=470.7
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcchHHHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVL 105 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~ 105 (585)
.++++++|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||||+||.+||++|+|||++|++
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg~~v~~~TsGpG~~N~~ 81 (568)
T 2wvg_A 2 SYTVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAF 81 (568)
T ss_dssp CEEHHHHHHHHHHHTTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHSCEEEEECTTTTHHHHH
T ss_pred CcCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhccCCceEeccCcHHHHHHHHHHHHHhhCCeEEEEeCCCCHHHHH
Confidence 47899999999999999999999999999999999876789999999999999999999999998899999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCCc
Q 007917 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKP 185 (585)
Q Consensus 106 ~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gP 185 (585)
+||++|+.+++|||+|+|+++....+++..+||..+.+|+.||.++|+++|||+.++.+++++++.+++||+.|.+++||
T Consensus 82 ~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~GP 161 (568)
T 2wvg_A 82 DAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKP 161 (568)
T ss_dssp HHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHTTSCSCEEEECSGGGHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccchHHHHHHHHhhEeEEEEeCCHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999888877777776666777999999999999999999999999999999999998899
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCC
Q 007917 186 VYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (585)
Q Consensus 186 V~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~P 265 (585)
|||+||.|++.. +.......+....+......+.++.+++++++|.+++||+|++|.|+.++++.+++.+|||++++|
T Consensus 162 V~l~iP~dv~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~P 239 (568)
T 2wvg_A 162 VYLEIACNIASM--PCAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGA 239 (568)
T ss_dssp EEEEEEGGGTTS--EECEECCTHHHHCCCCCCHHHHHHHHHHHHHHHTTCCCEEEEECTTTTTTTCHHHHHHHHHHHCCE
T ss_pred EEEEechhHhcC--cccCCCcccccccCCCCCccccHHHHHHHHHHHHhCCCCEEEECccccccchHHHHHHHHHHhCCC
Confidence 999999999763 221111111101111112234456799999999999999999999999989999999999999999
Q ss_pred eEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecCCCc
Q 007917 266 IAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPS 345 (585)
Q Consensus 266 v~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~~~~ 345 (585)
|++|++|||.||++||+++|.|.|..+++.++++++++|+||+||++++++.+..|..+.++.++||||.|+.+++ +.+
T Consensus 240 v~~t~~~kg~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~ 318 (568)
T 2wvg_A 240 VATMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVN-GIR 318 (568)
T ss_dssp EEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHHHCSEEEEESCCCBTTTTTTTTCCCCTTTEEEECSSEEEET-TEE
T ss_pred EEEchhcCccCCCCCCceeccccCCcCCHHHHHHHHhCCEEEEECCCcccccccccccCCCCCcEEEEeCChhhcC-Cee
Confidence 9999999999999999999998788888889999999999999999999888877776556778999999999997 556
Q ss_pred cccccHHHHHHHHHHHhccCccchhhhhhccC-CCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEecCCccccccccc
Q 007917 346 LGWVFMADFLSALAKKLRKNTTALENYRRIYV-PPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKL 424 (585)
Q Consensus 346 ~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~~~~ 424 (585)
+.+++++.+|++|.+.+......|..|.+... ............++++.++++.|++.+|++++++.|+|++.+...++
T Consensus 319 ~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~ 398 (568)
T 2wvg_A 319 FPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRM 398 (568)
T ss_dssp EESCCHHHHHHHHHHHCCCCCHHHHHHHHTTCCSCCCCCCCCTTSBCCHHHHHHHHHTTCCTTEEEEECSSHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHhccccccchhhhhhhhhhcccccccCCCCCccCHHHHHHHHHHhCCCCCEEEEcCcHHHHHHhhc
Confidence 66778999999999877543222333432221 11101111124569999999999999999999999999987555667
Q ss_pred cccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCCceeeeeeecC
Q 007917 425 RLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNGGYTIEVEIHD 500 (585)
Q Consensus 425 ~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~ 500 (585)
+.+++.+++.+.++|+||+++|+|+|+++|+|+++||+++|||+|+ ||+|++++++|+++||+||++|++.+.++.
T Consensus 399 ~~~~~~~~~~~~~~g~~G~~l~~A~G~ala~~~~~vv~i~GDGs~~~~~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~ 478 (568)
T 2wvg_A 399 KLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHD 478 (568)
T ss_dssp CCCTTCEEECCTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSC
T ss_pred ccCCCCeEEeCCCcchhhhHHHHHHHHHHhCCCCcEEEEEcChhHhccHHHHHHHHHcCCCcEEEEEECCcceEeeeecc
Confidence 7777777999999999999999999999999999999999999998 999999999999999999999999544434
Q ss_pred CCCCCCCCCCHHHHHHHhcCC----CCCccEEEecCHHHHHHHHHHhhhcCC-CCeEEEEEEcCCCCChHHHHHHHHhhh
Q 007917 501 GPYNVIKNWDYTGLVNAIHNG----EGKCWTAKVRSEDELTEAMKTATGEQK-DSLCFIEVFVHKDDTSKELLEWGSRVS 575 (585)
Q Consensus 501 ~~~~~~~~~d~~~la~a~G~~----~~~~~~~~v~~~~eL~~al~~a~~~~~-~gp~vIeV~v~~~~~~~~~~~~~~~~~ 575 (585)
..|++++++||.++|++||+. ...+++++|++.+||+++|+++++ . +||+||||.+++++.++.++++.+.++
T Consensus 479 ~~~~~~~~~d~~~~a~a~G~~~~~~~~~~~~~~v~~~~el~~al~~a~~--~~~gp~liev~~~~~~~~~~~~~~~~~~~ 556 (568)
T 2wvg_A 479 GPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVALA--NTDGPTLIECFIGREDCTEELVKWGKRVA 556 (568)
T ss_dssp CGGGCCCCCCHHHHHHHHHCTTSSSCCCCEEEEESBHHHHHHHHHHHHH--CCSSCEEEEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCcCCCCCCHHHHHHHhCCCcccccCCcceEEeCCHHHHHHHHHHHHh--cCCCcEEEEEEcCccccCHHHHHHHHHhH
Confidence 456677889999999999971 001158899999999999999986 5 899999999999999999999999998
Q ss_pred hhcCCCC
Q 007917 576 AANSRPP 582 (585)
Q Consensus 576 ~~~~~~~ 582 (585)
+.++++|
T Consensus 557 ~~~~~~~ 563 (568)
T 2wvg_A 557 AANSRKP 563 (568)
T ss_dssp HHHHCCC
T ss_pred hhccCCc
Confidence 8877653
No 2
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=100.00 E-value=9.6e-94 Score=789.45 Aligned_cols=548 Identities=43% Similarity=0.739 Sum_probs=470.5
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcchHHHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVL 105 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~ 105 (585)
.++++++|++.|+++||++|||+||+++.+|+++|.+.++|++|.++||++|+|||+||||+||.+||++|+|||++|++
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg~~v~~~TsGpG~~N~~ 81 (566)
T 2vbi_A 2 TYTVGMYLAERLVQIGLKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCNELNCGFSAEGYARSNGAAAAVVTFSVGAISAM 81 (566)
T ss_dssp CCBHHHHHHHHHHHHTCSEEEECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHSCEEEEECTTTTHHHHH
T ss_pred ccCHHHHHHHHHHHcCCCEEEeCCCCccHHHHHHHhcCCCCeEEeeCcHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHH
Confidence 37899999999999999999999999999999999876689999999999999999999999998899999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCCc
Q 007917 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKP 185 (585)
Q Consensus 106 ~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~gP 185 (585)
+||++|+.+++|||+|+|+++....+++..+||..+.+|+.||.++|+++|||+.++.+++++++.|++|++.|.+++||
T Consensus 82 ~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GP 161 (566)
T 2vbi_A 82 NALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSYQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRERKP 161 (566)
T ss_dssp HHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcchHHHHHHHhhhEeEEEEeCCHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999888877777777556777999999999999999999999999999999999998899
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCC
Q 007917 186 VYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (585)
Q Consensus 186 V~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~P 265 (585)
|||+||.|++.. +.......+....+......+..+.+++++++|.+++||+|++|.|+.++++.+++.+|||++++|
T Consensus 162 V~l~iP~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~P 239 (566)
T 2vbi_A 162 AYLDIACNIASE--PCVRPGPVSSLLSEPEIDHTSLKAAVDATVALLEKSASPVMLLGSKLRAANALAATETLADKLQCA 239 (566)
T ss_dssp EEEEEETTTTTS--BCCEECCCSCSCCCBCCCHHHHHHHHHHHHHHHHTCSCEEEEECTTTTTTTCHHHHHHHHHHHCCE
T ss_pred EEEEechhhcCC--eecCCCCCcccCCCCCCCcchHHHHHHHHHHHHHhCCCCEEEECcCccccchHHHHHHHHHHhCCC
Confidence 999999999763 221100111111111112233456799999999999999999999999989999999999999999
Q ss_pred eEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecCCCc
Q 007917 266 IAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPS 345 (585)
Q Consensus 266 v~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~~~~ 345 (585)
|++|++|||.||++||+++|.|.|..+++.++++++++|+||+||++++++.+..|..+.++.++||||+|+.+++ +..
T Consensus 240 v~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~ 318 (566)
T 2vbi_A 240 VTIMAAAKGFFPEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAPVFNDYSTVGWSAWPKGPNVILAEPDRVTVD-GRA 318 (566)
T ss_dssp EEEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHHTCSEEEEESCCCBTTTTTTTTSCCCSTTEEEECSSEEEET-TEE
T ss_pred EEEccccCccCCCCCccccccccCccCCHHHHHHHHhCCEEEEECCCccccccccccccCCCCcEEEEeCChheeC-Ccc
Confidence 9999999999999999999998788888889999999999999999999998888876656778999999999997 556
Q ss_pred cccccHHHHHHHHHHHhccCccchhhhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEecCCcccccccccc
Q 007917 346 LGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLR 425 (585)
Q Consensus 346 ~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~~~~~ 425 (585)
..+++++.+|++|.+.+......|..|.+.... . .. .....++++.++++.|++.++++++++.|+|++.+...+++
T Consensus 319 ~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~-~-~~-~~~~~~l~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~ 395 (566)
T 2vbi_A 319 YDGFTLRAFLQALAEKAPARPASAQKSSVPTCS-L-TA-TSDEAGLTNDEIVRHINALLTSNTTLVAETGDSWFNAMRMT 395 (566)
T ss_dssp EESSCHHHHHHHHHHHCCCCCHHHHTSCCCCCC-C-CC-CCTTSCCCHHHHHHHHHHHCCTTEEEEECSSHHHHHHHTCC
T ss_pred cCCccHHHHHHHHHHhccccccchhhhhhhhhc-c-CC-CCCCCccCHHHHHHHHHHhcCCCCEEEECCchHHHhhhheE
Confidence 667788999999998775432223333221111 1 11 12335799999999999999999999999999875555666
Q ss_pred ccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCCceeeeeeecCC
Q 007917 426 LPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNGGYTIEVEIHDG 501 (585)
Q Consensus 426 ~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~ 501 (585)
.+++.+++.+.++|+||+++|+|+|+++|.|+++||+++|||+|+ ||+|++++++|+++||+||++|++.+.++..
T Consensus 396 ~~~~~~~~~~~~~g~mG~~l~~A~G~ala~~~~~vv~~~GDG~~~~~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~ 475 (566)
T 2vbi_A 396 LPRGARVELEMQWGHIGWSVPSAFGNAMGSQDRQHVVMVGDGSFQLTAQEVAQMVRYELPVIIFLINNRGYVIEIAIHDG 475 (566)
T ss_dssp CCTTCEEECCTTTCCTTTHHHHHHHHHHTCTTSEEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCC
T ss_pred CCCCCEEEecCcccchhhHHHHHHHHHHhCCCCcEEEEEcchHHHhhHHHHHHHHHhCCCcEEEEEECCcceEEEeeccC
Confidence 666677999999999999999999999999999999999999998 9999999999999999999999995444344
Q ss_pred CCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCC-CCeEEEEEEcCCCCChHHHHHHHHhhhhhcCC
Q 007917 502 PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQK-DSLCFIEVFVHKDDTSKELLEWGSRVSAANSR 580 (585)
Q Consensus 502 ~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~-~gp~vIeV~v~~~~~~~~~~~~~~~~~~~~~~ 580 (585)
.|++++++||.++|++||+....+++++|++.+||+++|+++++ . +||+||||.+++++.++.++++.+.+++++++
T Consensus 476 ~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~~~~el~~al~~a~~--~~~gp~liev~~~~~~~~~~~~~~~~~~~~~~~~ 553 (566)
T 2vbi_A 476 PYNYIKNWDYAGLMEVFNAGEGHGLGLKATTPKELTEAIARAKA--NTRGPTLIECQIDRTDCTDMLVQWGRKVASTNAR 553 (566)
T ss_dssp GGGCCCCCCTTTHHHHHHTTTCCCEEEEECSHHHHHHHHHHHHH--CCSSCEEEEEECCTTCCCHHHHHHHHHHHHHHTC
T ss_pred CccCCCCCCHHHHHHHcCCCCCCccEEEeCCHHHHHHHHHHHHh--cCCCcEEEEEEeCcccCcHHHHHHHHHhhhhccc
Confidence 56677889999999999972222368899999999999999986 5 89999999999999999999999999998887
Q ss_pred C
Q 007917 581 P 581 (585)
Q Consensus 581 ~ 581 (585)
+
T Consensus 554 ~ 554 (566)
T 2vbi_A 554 K 554 (566)
T ss_dssp C
T ss_pred c
Confidence 5
No 3
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=100.00 E-value=1e-93 Score=789.20 Aligned_cols=545 Identities=32% Similarity=0.496 Sum_probs=463.0
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcchHHH
Q 007917 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSV 104 (585)
Q Consensus 25 ~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~n~ 104 (585)
+.++++++|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||||+||.+||++|+|||++|+
T Consensus 2 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg~~v~~~TsGpG~~N~ 81 (563)
T 2vk8_A 2 SEITLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMSCIITTFGVGELSA 81 (563)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHGGGGSTTCEECCCSSHHHHHHHHHHHHHHHSCEEEEEETTHHHHHH
T ss_pred CccCHHHHHHHHHHHcCCCEEEEcCCcchHHHHHHHhhcCCceEEccCchHHHHHHHHHHHHhhCCcEEEEcCCCcHHHH
Confidence 35899999999999999999999999999999999987668999999999999999999999999899999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCC
Q 007917 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (585)
Q Consensus 105 ~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~g 184 (585)
++||++|+.+++|||+|||++|....+++..+||.++...+.+|.++|+++|||+.++.+++++++.|++|++.|.+++|
T Consensus 82 ~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~~q~~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~G 161 (563)
T 2vk8_A 82 LNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQR 161 (563)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSCSSHHHHHHHTTCSEEEECCCTTTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcchHHHHHHhhhhEEEEEEeCCHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999877777778888876556688999999999999999999999999999999998889
Q ss_pred cEEEEecCCCCCCCCCCCCCC-CCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhC
Q 007917 185 PVYISISCNLPGIPHPTFARD-PVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (585)
Q Consensus 185 PV~i~iP~dv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~ 263 (585)
||||+||.|++.. +..... +.+...........+.++.+++++++|.++|||+|++|+|+.++++.+++++|||+++
T Consensus 162 PV~l~iP~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~ 239 (563)
T 2vk8_A 162 PVYLGLPANLVDL--NVPAKLLQTPIDMSLKPNDAESEKEVIDTILVLDKDAKNPVILADACCSRHDVKAETKKLIDLTQ 239 (563)
T ss_dssp CEEEEEETTGGGS--EEEGGGGGSCCCCSCCCCCHHHHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHC
T ss_pred CEEEEechhhhcC--ccCCccCcCcccccCCCCCchhhHHHHHHHHHHHHhCCCCEEEECcCccccchHHHHHHHHHHhC
Confidence 9999999999753 211100 0011011111122334567999999999999999999999998899999999999999
Q ss_pred CCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecCC
Q 007917 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (585)
Q Consensus 264 ~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~~ 343 (585)
+||++|++|||.||++||+++|.|.|..+++.++++++++|+||+||++++++.+..|..+.++.++||||+|+.+++ +
T Consensus 240 ~Pv~~t~~g~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~ 318 (563)
T 2vk8_A 240 FPAFVTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYKTKNIVEFHSDHMKIR-N 318 (563)
T ss_dssp CCEEECTTTTTSSCTTSTTEEEECCGGGSCHHHHHHHHTCSEEEEESCCCCTTTTTTTCCCCCCSCEEEECSSEEEET-T
T ss_pred CCEEECcccCccCCCCCCcccccccCccCCHHHHHHHHhCCEEEEECCCCccccccccccCCCCCeEEEEeCCceEEC-C
Confidence 999999999999999999999997788888999999999999999999999988877765555678999999999997 5
Q ss_pred CccccccHHHHHHHHHHHhccCccchhhhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEecCCcccccccc
Q 007917 344 PSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQK 423 (585)
Q Consensus 344 ~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~~~ 423 (585)
.+..+++++.+|++|.+.+......|....+.. ............++++.++++.|++.++++++++.|+|++.++..+
T Consensus 319 ~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~ 397 (563)
T 2vk8_A 319 ATFPGVQMKFVLQKLLTTIADAAKGYKPVAVPA-RTPANAAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQ 397 (563)
T ss_dssp EEEETCCHHHHHHHHHHHHHHHTTTCCCCCCCC-CCCCCCCCCTTCBCCHHHHHHHHTTTCCTTCEEEECTTHHHHHGGG
T ss_pred cccCCcCHHHHHHHHHHhhccccchhhhhhhhh-hcccccCCCCCCCcCHHHHHHHHHHhCCCCCEEEECCchHHHHHhh
Confidence 556677889999999887653221111111110 0000001113347999999999999999999999999998766666
Q ss_pred ccccCCCeeEeccCcccccchHHHHHHHhhhcCC----CcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCCceeee
Q 007917 424 LRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKD----KRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNGGYTIE 495 (585)
Q Consensus 424 ~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~----~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
+..+++.+++.++++|+||+++|+|+|+++|.|+ ++||+++|||+|+ ||+|++++++|+++||+||++|++.
T Consensus 398 ~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~~~el~ta~~~~l~~~ivv~nN~~~~~~ 477 (563)
T 2vk8_A 398 TTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIQ 477 (563)
T ss_dssp SCCCSSCEEECCTTTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEESSSCHHH
T ss_pred cCcCCCCeEEcccchhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhccHHHHHHHHHcCCCcEEEEEECCcchhh
Confidence 7777777899999999999999999999999987 9999999999998 9999999999999999999999995
Q ss_pred eeecC--CCCCCCCCCCHHHHHHHhcCCCCCcc---EEEecCHHHHHHHHH-HhhhcCCCCeEEEEEEcCCCCChHHHHH
Q 007917 496 VEIHD--GPYNVIKNWDYTGLVNAIHNGEGKCW---TAKVRSEDELTEAMK-TATGEQKDSLCFIEVFVHKDDTSKELLE 569 (585)
Q Consensus 496 ~~~~~--~~~~~~~~~d~~~la~a~G~~~~~~~---~~~v~~~~eL~~al~-~a~~~~~~gp~vIeV~v~~~~~~~~~~~ 569 (585)
+.++. ..++++..+||.++|++||+ + +++|++.+||+++|+ ++++ ..++|+||||.+++++.++.+++
T Consensus 478 ~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~~~~v~~~~el~~al~~~a~~-~~~~p~liev~~~~~~~~~~~~~ 551 (563)
T 2vk8_A 478 KLIHGPKAQYNEIQGWDHLSLLPTFGA-----KDYETHRVATTGEWDKLTQDKSFN-DNSKIRMIEVMLPVFDAPQNLVE 551 (563)
T ss_dssp HHHSCTTCGGGCCCCCCGGGHHHHTTC-----SSEEEEEECBHHHHHHHHTCTTTT-SCSSEEEEEEECCTTCCCHHHHH
T ss_pred hhhhCCCCCcccCCCCCHHHHHHHhCC-----CCCcEEEecCHHHHHHHHHHHHHh-CCCCcEEEEEEeCccccCHHHHH
Confidence 43321 24556778999999999999 8 999999999999999 8874 23479999999999999999999
Q ss_pred HHHhhhhhcC
Q 007917 570 WGSRVSAANS 579 (585)
Q Consensus 570 ~~~~~~~~~~ 579 (585)
+.+.++++++
T Consensus 552 ~~~~~~~~~~ 561 (563)
T 2vk8_A 552 QAKLTAATNA 561 (563)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhhhhhc
Confidence 9999888765
No 4
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=100.00 E-value=6.4e-92 Score=773.51 Aligned_cols=543 Identities=31% Similarity=0.485 Sum_probs=460.1
Q ss_pred CCcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcchHH
Q 007917 24 ASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLS 103 (585)
Q Consensus 24 ~~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~n 103 (585)
+..++++++|++.|+++||++|||+||+++++|+++|.+.++|++|.++||++|+|||+||||+||.+||++|+|||++|
T Consensus 2 ~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~N 81 (552)
T 1ovm_A 2 RTPYCVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKGFAALLTTFGVGELS 81 (552)
T ss_dssp -CCCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHSCEEEEEETTHHHHH
T ss_pred CCccCHHHHHHHHHHHcCCCEEEECCChhHHHHHHHHhcCCCceEEeeCcHHHHHHHHHHHHHhhCCcEEEEccCCcHHH
Confidence 34589999999999999999999999999999999998777899999999999999999999999989999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcC
Q 007917 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKES 183 (585)
Q Consensus 104 ~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~ 183 (585)
+++||++|+.+++|||+|+|++|....+++..+||.++...+.+|.++|+++|||+.++++ +++++.|++|++.|.+++
T Consensus 82 ~~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~~q~~~~~~~~~tk~~~~v~~-~~~~~~i~~A~~~a~~~~ 160 (552)
T 1ovm_A 82 AMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTE-QNACYEIDRVLTTMLRER 160 (552)
T ss_dssp THHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCcHHHHHHHHHhheeEEEEEcc-ccHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999998777666778777655556789999999999999999 999999999999999878
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhC
Q 007917 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (585)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~ 263 (585)
|||||+||.|++.. +.... +.+..............+.+++++++|.+++||+|++|+|+.++++.+++++|+|+++
T Consensus 161 GPV~l~iP~d~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~ 237 (552)
T 1ovm_A 161 RPGYLMLPADVAKK--AATPP-VNALTHKQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVP 237 (552)
T ss_dssp CCEEEEEEHHHHHS--BCCCC-SSCCCCCCCCCCHHHHHHHHHHHHHHHHTCSCEEEEECHHHHHTTCHHHHHHHHHHSC
T ss_pred CCEEEEeehhhccC--ccCCC-cccccccCCCCCccchHHHHHHHHHHHHhCCCCEEEECcCccccCHHHHHHHHHHHHC
Confidence 99999999998642 22111 1111111111122345567999999999999999999999998899999999999999
Q ss_pred CCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecCC
Q 007917 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (585)
Q Consensus 264 ~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~~ 343 (585)
+||++|++|||.||++||+++|.+.|..+++.++++++++|+||+||++++++.+..|..+.++.++||||+|+.+++ +
T Consensus 238 ~Pv~~t~~~~g~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~ 316 (552)
T 1ovm_A 238 MAHATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQPHAARVG-D 316 (552)
T ss_dssp CEEEECGGGTTSSCTTSTTCCCCCCGGGSCHHHHHHHHTSSEEEEESCCCCTTTTTTTCCCCCTTTEEEECSSEEEET-T
T ss_pred CCEEEccccCccCCCCCcCeecccCCCCCCHHHHHHHHhCCEEEEECCCCCcccccccccCCCCCeEEEEeCChheeC-C
Confidence 999999999999999999999987788888999999999999999999999998888776556678999999999997 5
Q ss_pred CccccccHHHHHHHHHHHhccCccchh-hhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEecCCccccccc
Q 007917 344 PSLGWVFMADFLSALAKKLRKNTTALE-NYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQ 422 (585)
Q Consensus 344 ~~~~~~~~~~~l~~L~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~~ 422 (585)
....+++++.+|++|.+ +......|. .+++.. . ........++++.++++.|++.++++++++.|+|++.++..
T Consensus 317 ~~~~~~~~~~~l~~L~~-l~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~ 391 (552)
T 1ovm_A 317 VWFTGIPMNQAIETLVE-LCKQHVHAGLMSSSSG-A---IPFPQPDGSLTQENFWRTLQTFIRPGDIILADQGTSAFGAI 391 (552)
T ss_dssp EEEESCCHHHHHHHHHH-HHHTSCCC------------------CCSBCCHHHHHHHHHHHCCTTCEEEECTTHHHHHHT
T ss_pred cccCCccHHHHHHHHHh-Ccccccchhhhhhhcc-c---cccCCCCCccCHHHHHHHHHHhcCCCCEEEECCchHHHHHH
Confidence 55567788999999988 653322221 222110 0 00111334699999999999999999999999999876556
Q ss_pred cccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCCceeeeeee
Q 007917 423 KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNGGYTIEVEI 498 (585)
Q Consensus 423 ~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~~~~~~~~~ 498 (585)
++..+++.+++.++++|+||+++|+|+|+++|.|+++||+++|||+|+ ||+|++++++|+++||+||++|++.+..
T Consensus 392 ~~~~~~~~~~~~~~~~g~mG~~l~~A~G~a~a~~~~~vv~~~GDG~~~~~~~el~ta~~~~l~~~ivv~nN~~~~~~~~~ 471 (552)
T 1ovm_A 392 DLRLPADVNFIVQPLWGSIGYTLAAAFGAQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAI 471 (552)
T ss_dssp TCCCCSSCEEECCTTTCCTTHHHHHHHHHHHHCTTSCEEEEEEHHHHHHHTTHHHHHHHTTCCCEEEEEESSSCHHHHHH
T ss_pred hcccCCCCeEEechhhHhhhhHHHHHHHHHHhCCCCcEEEEECchHHHhHHHHHHHHHHhCCCCEEEEEECCCCeEEEee
Confidence 666677777999999999999999999999999999999999999998 9999999999999999999999995433
Q ss_pred c--CCCCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChHHHHHHHHhhhh
Q 007917 499 H--DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSA 576 (585)
Q Consensus 499 ~--~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~~~~~~~~~~~~~~ 576 (585)
+ ...|++++++||.++|++||+. ..+++++|++.+||+++|+++++ .+||+||||.+++++.++.++++.+.+++
T Consensus 472 ~~~~~~~~~~~~~d~~~~a~a~G~~-~~~~~~~v~~~~~l~~al~~a~~--~~gp~liev~~~~~~~~~~l~~~~~~~~~ 548 (552)
T 1ovm_A 472 HGAEQRYNDIALWNWTHIPQALSLD-PQSECWRVSEAEQLADVLEKVAH--HERLSLIEVMLPKADIPPLLGALTKALEA 548 (552)
T ss_dssp SCTTCGGGCCCCCCGGGSTTTSCSS-CCEEEEEECBHHHHHHHHHHHTT--CSSEEEEEEECCTTCCCHHHHHHHHHHHH
T ss_pred ccCCCCcccCCCCCHHHHHHHhCCC-cCCCEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEcCcccCCHHHHHHHHHHhh
Confidence 2 2245667789999999999971 01158899999999999999986 78999999999999999999999999988
Q ss_pred hcC
Q 007917 577 ANS 579 (585)
Q Consensus 577 ~~~ 579 (585)
.++
T Consensus 549 ~~~ 551 (552)
T 1ovm_A 549 CNN 551 (552)
T ss_dssp HHC
T ss_pred hhc
Confidence 765
No 5
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=100.00 E-value=2.1e-91 Score=769.64 Aligned_cols=535 Identities=25% Similarity=0.386 Sum_probs=445.2
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHH
Q 007917 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (585)
Q Consensus 25 ~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (585)
..++++++|++.|+++||++|||+||++++||+++|.+.+.+++|.++||++|+|||+||||+||+ +||++|+|||++|
T Consensus 19 ~~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~TsGpG~~N 98 (565)
T 2nxw_A 19 SHMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVAEETQILPLHTLSHEPAVGFAADAAARYSSTLGVAAVTYGAGAFN 98 (565)
T ss_dssp CCCBHHHHHHHHHHHTTCCCEEECCCGGGHHHHHHHHHHCSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHT
T ss_pred CCcCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEECCCCCHHH
Confidence 348999999999999999999999999999999999865567899999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHH-HHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc
Q 007917 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ-ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (585)
Q Consensus 104 ~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~ 182 (585)
+++||++|+.+++|||+|||+++....+++..+||..| ..| |..+|+++|||+.++.+++++++.+++||+.|.++
T Consensus 99 ~~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q---~~d~q~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~ 175 (565)
T 2nxw_A 99 MVNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGR---TLDTQFQVFKEITVAQARLDDPAKAPAEIARVLGAARAQ 175 (565)
T ss_dssp THHHHHHHHHTTCCEEEEEEECCTTCC--CCCC----------CHHHHHHTTSCSCEEECCCTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeecc---chhhHHHHHHhhheEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999988887766555443 344 89999999999999999999999999999999988
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHh
Q 007917 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (585)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l 262 (585)
+|||||+||.|++.. +.....+.+ .. ...+...++.+++++++|.++|||+|++|.|+.++++.+++++|||++
T Consensus 176 ~GPV~l~iP~Dv~~~--~~~~~~~~~--~~--~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~ 249 (565)
T 2nxw_A 176 SRPVYLEIPRNMVNA--EVEPVGDDP--AW--PVDRDALAACADEVLAAMRSATSPVLMVCVEVRRYGLEAKVAELAQRL 249 (565)
T ss_dssp TCCEEEEEEGGGTTC--BCCCCCCCC--CC--CCCHHHHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHH
T ss_pred CCCEEEECChhhhcC--cCCCccccC--CC--CCCchhhHHHHHHHHHHHHcCCCCEEEECCCcchhchHHHHHHHHHHh
Confidence 899999999999763 332111111 11 111233456789999999999999999999999888999999999999
Q ss_pred CCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecC
Q 007917 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (585)
Q Consensus 263 ~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~ 342 (585)
++||++|++|||.+|++||+++|.|.|..+++.++++++++|+||+||+++++..+..|....+..++|++|.|+.+++
T Consensus 250 ~~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~i~~d~~~~~- 328 (565)
T 2nxw_A 250 GVPVVTTFMGRGLLADAPTPPLGTYIGVAGDAEITRLVEESDGLFLLGAILSDTNFAVSQRKIDLRKTIHAFDRAVTLG- 328 (565)
T ss_dssp CSCEEECGGGTTTTTTSSSCCSCBCCGGGSCHHHHHHHHTCSEEEEESCCBCSSTTSBCTTTSCGGGEEEEETTEEEET-
T ss_pred CCCEEECcccCccCCCCCCccccccCcccCCHHHHHHHHhCCEEEEECCCccccccccccccCCCCcEEEEeCCceeeC-
Confidence 9999999999999999999999987788889999999999999999999999888766654444568999999999987
Q ss_pred CCccccccHHHHHHHHHHHhccCccchhhhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCC--CCEE-EecCCcccc
Q 007917 343 GPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSG--DTAV-IAETGDSWF 419 (585)
Q Consensus 343 ~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~--~~ii-~~d~G~~~~ 419 (585)
+....++.+..++++|.+.+......|....+. ...........++++.++++.|++.+|+ ++++ +.|+|++.+
T Consensus 329 ~~~~~~~~~~~~l~~L~~~l~~~~~~w~~~~~~---~~~~~~~~~~~~l~~~~v~~~l~~~l~~~~~~iv~~~d~G~~~~ 405 (565)
T 2nxw_A 329 YHTYADIPLAGLVDALLERLPPSDRTTRGKEPH---AYPTGLQADGEPIAPMDIARAVNDRVRAGQEPLLIAADMGDCLF 405 (565)
T ss_dssp TEEEESCCHHHHHHHHHHTSCCCCCCCCCSCSS---CCCCCCCCSSSBCCHHHHHHHHHHHHHTTCCCCEEEECSSHHHH
T ss_pred CcccCCccHHHHHHHHHHhccccchhhhhhhhh---hccccccCCCCccCHHHHHHHHHHhcccccCCEEEEecchHHHH
Confidence 445556678889999988765432222111110 0000001123469999999999999999 9998 899999875
Q ss_pred ccccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCCceeee
Q 007917 420 NCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNGGYTIE 495 (585)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
+...+ .+.+++.++++|+||+++|+|+|+++|.|+++||+++|||+|+ ||+|++++++|+++||+||++|++.
T Consensus 406 ~~~~~---~~~~~~~~~~~g~mG~~l~~A~G~ala~~~~~vv~i~GDG~~~~~~~~l~ta~~~~l~~~ivv~nN~~~~~~ 482 (565)
T 2nxw_A 406 TAMDM---IDAGLMAPGYYAGMGFGVPAGIGAQCVSGGKRILTVVGDGAFQMTGWELGNCRRLGIDPIVILFNNASWEML 482 (565)
T ss_dssp HHTTS---CCSCEECCTTTCCTTCHHHHHHHHHHHTTTCCEEEEEEHHHHHHHGGGGGGHHHHTCCCEEEEEECSBCHHH
T ss_pred HHHhC---CCcEEEccCccccccccchHHHHHHHhCCCCcEEEEEechHHHhhHHHHHHHHHhCCCCEEEEEECCCCcEE
Confidence 55444 3445888999999999999999999999999999999999998 9999999999999999999999984
Q ss_pred eeec-CCCCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeE-EEEEEcCCCCChHHHHHHHHh
Q 007917 496 VEIH-DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLC-FIEVFVHKDDTSKELLEWGSR 573 (585)
Q Consensus 496 ~~~~-~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~-vIeV~v~~~~~~~~~~~~~~~ 573 (585)
...+ ...|.+++.+||.++|++||+ ++++|++.+||+++|+++++ .++|. ||||.+++++.++.++++.+.
T Consensus 483 ~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~gp~~liev~~~~~~~~~~~~~~~~~ 555 (565)
T 2nxw_A 483 RTFQPESAFNDLDDWRFADMAAGMGG-----DGVRVRTRAELKAALDKAFA--TRGRFQLIEAMIPRGVLSDTLARFVQG 555 (565)
T ss_dssp HHHCTTCGGGBCCCCCHHHHTGGGTS-----EEEEECBHHHHHHHHHHHHH--CCSSCEEEEEECCTTCCCHHHHHHHHH
T ss_pred eeecccCCCCcCCCCCHHHHHHHcCC-----CEEEeCCHHHHHHHHHHHHh--cCCCeEEEEEEcccccCCHHHHHHHHH
Confidence 3222 235666788999999999999 99999999999999999986 67887 999999999999999999999
Q ss_pred hhhhcCCCC
Q 007917 574 VSAANSRPP 582 (585)
Q Consensus 574 ~~~~~~~~~ 582 (585)
+++.+++++
T Consensus 556 ~~~~~~~~~ 564 (565)
T 2nxw_A 556 QKRLHAAPR 564 (565)
T ss_dssp HHHC-----
T ss_pred HHHhhcccC
Confidence 998877753
No 6
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=100.00 E-value=2.7e-91 Score=770.50 Aligned_cols=538 Identities=31% Similarity=0.485 Sum_probs=458.7
Q ss_pred cCCcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcchH
Q 007917 23 GASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGL 102 (585)
Q Consensus 23 ~~~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~ 102 (585)
|...++++++|++.|+++||++|||+||+++++|+++|.+.++|++|.++||++|+|||+||||+||.+||++|+|||++
T Consensus 21 m~~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~GyAr~tG~~v~~~tsGpG~~ 100 (570)
T 2vbf_A 21 MASMYTVGDYLLDRLHELGIEEIFGVPGDYNLQFLDQIISREDMKWIGNANELNASYMADGYARTKKAAAFLTTFGVGEL 100 (570)
T ss_dssp ---CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHSCEEEEEETTHHHH
T ss_pred ccCcCCHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHhcCCCCeEECcCcHHHHHHHHHHHHHHhCCeEEEEcCCCCHH
Confidence 44458999999999999999999999999999999999876789999999999999999999999998999999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc
Q 007917 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (585)
Q Consensus 103 n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~ 182 (585)
|+++||++|+.+++|||+|+|+++....+++..+||..+..++.+|..+++++|||+.++.+ +++++.+++|++.|.++
T Consensus 101 N~~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~-~~~~~~l~~A~~~A~~~ 179 (570)
T 2vbf_A 101 SAINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLTA-ENATYEIDRVLSQLLKE 179 (570)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECCT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccchHHHHHHhhhhEEEEEEECc-ccHHHHHHHHHHHHhhC
Confidence 99999999999999999999999998777666677777655677799999999999999999 99999999999999988
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHh
Q 007917 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (585)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l 262 (585)
+|||||+||.|++.. +.... ..+.........+.. .+.+++++++|.+++||+|++|.|+.++++.+++++|+|++
T Consensus 180 ~GPV~l~iP~d~~~~--~~~~~-~~~~~~~~~~~~~~~-~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~ 255 (570)
T 2vbf_A 180 RKPVYINLPVDVAAA--KAEKP-ALSLEKESSTTNTTE-QVILSKIEESLKNAQKPVVIAGHEVISFGLEKTVTQFVSET 255 (570)
T ss_dssp CCCEEEEEEHHHHTS--BCCCC-SSCCC------CHHH-HHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHH
T ss_pred CCCEEEEcchhhhcC--cccCC-cccccccCCCCCccH-HHHHHHHHHHHHcCCCCEEEECcCccccChHHHHHHHHHHH
Confidence 899999999999653 22111 111100111111122 56799999999999999999999999989999999999999
Q ss_pred CCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecC
Q 007917 263 GYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (585)
Q Consensus 263 ~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~ 342 (585)
++||++|++|||.||++||+++|.|.|..+++.++++++++|+||+||+++.+..+..|..+.+..++|+||+|+.+++
T Consensus 256 ~~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~- 334 (570)
T 2vbf_A 256 KLPITTLNFGKSAVDESLPSFLGIYNGKLSEISLKNFVESADFILMLGVKLTDSSTGAFTHHLDENKMISLNIDEGIIF- 334 (570)
T ss_dssp CCCEEECSTTTTSSCTTSTTEEEECCGGGSCHHHHHHHHHCSEEEEESCCCCGGGTTTTCCCCCGGGEEEECSSCEEET-
T ss_pred CCCEEECcccCccCCCCCcCccCCcCCCcCCHHHHHHHHhCCEEEEECCCcccccccccccCCCCCeEEEEeCCHHHhC-
Confidence 9999999999999999999999998788889999999999999999999999888877776556678999999999997
Q ss_pred CCccccccHHHHHHHHHHHhccCccchhhhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEecCCccccccc
Q 007917 343 GPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQ 422 (585)
Q Consensus 343 ~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~~ 422 (585)
+....+++++.+|++|.+.+.... |. |.... .. ........++++..+++.|++.++++++++.|+|++.++..
T Consensus 335 ~~~~~~~~~~~~l~~L~~~l~~~~--~~-~~~~~--~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~ 408 (570)
T 2vbf_A 335 NKVVEDFDFRAVVSSLSELKGIEY--EG-QYIDK--QY-EEFIPSSAPLSQDRLWQAVESLTQSNETIVAEQGTSFFGAS 408 (570)
T ss_dssp TEEECSSCHHHHHHTGGGCCSCCC--CS-CCCCC--CC-CCCCCCSSBCCHHHHHHHHHHHCCSSEEEEECTTHHHHHHT
T ss_pred CeeecCCCHHHHHHHHHHhccccc--cc-cchhh--hc-cccCCCCCCcCHHHHHHHHHHhcCCCCEEEEeCCHHHHHHH
Confidence 556667889999999977664322 21 21110 10 11112234699999999999999999999999999876555
Q ss_pred cccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCCceeeeeee
Q 007917 423 KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNGGYTIEVEI 498 (585)
Q Consensus 423 ~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~~~~~~~~~ 498 (585)
++..+++.+++++.++|+||+++|+|+|+++|.|+++||+++|||+|+ ||+|++++++|+++||+||++|++++.+
T Consensus 409 ~~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~~~~vv~~~GDG~~~~~~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~ 488 (570)
T 2vbf_A 409 TIFLKSNSRFIGQPLWGSIGYTFPAALGSQIADKESRHLLFIGDGSLQLTVQELGLSIREKLNPICFIINNDGYTVEREI 488 (570)
T ss_dssp TSCCCTTCEEECCTTTCCTTTHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEESSSCHHHHHH
T ss_pred hcccCCCCeEecCccchhhhhhHHHHHHHHHhCCCCcEEEEEcchhhhcCHHHHHHHHHcCCCCEEEEEECCchHHHHHH
Confidence 566677778999999999999999999999999999999999999999 9999999999999999999999995433
Q ss_pred c--CCCCCCCCCCCHHHHHHHhcCCCCCcc-----EEEecCHHHHHHHHHHh-hhcCCCCeEEEEEEcCCCCChHHHHHH
Q 007917 499 H--DGPYNVIKNWDYTGLVNAIHNGEGKCW-----TAKVRSEDELTEAMKTA-TGEQKDSLCFIEVFVHKDDTSKELLEW 570 (585)
Q Consensus 499 ~--~~~~~~~~~~d~~~la~a~G~~~~~~~-----~~~v~~~~eL~~al~~a-~~~~~~gp~vIeV~v~~~~~~~~~~~~ 570 (585)
+ ...|++++++||.++|++||+ + +++|++.+||+++|+++ +. .++|+||||.+++++.++.++++
T Consensus 489 ~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~~~~~~v~~~~el~~al~~a~~~--~~~p~liev~~~~~~~~~~~~~~ 561 (570)
T 2vbf_A 489 HGPTQSYNDIPMWNYSKLPETFGA-----TEDRVVSKIVRTENEFVSVMKEAQAD--VNRMYWIELVLEKEDAPKLLKKM 561 (570)
T ss_dssp SCTTCGGGCCCCCCGGGHHHHTTC-----CTTTEEEEEECBHHHHHHHHHHHHHC--TTSEEEEEEECCTTCCCHHHHHH
T ss_pred hccCCCccCCCCCCHHHHHHHcCC-----CcCCcceEEecCHHHHHHHHHHHHhc--CCCcEEEEEEcCcccccHHHHHH
Confidence 3 234566788999999999999 7 89999999999999984 54 78999999999999999999999
Q ss_pred HHhhhhhcC
Q 007917 571 GSRVSAANS 579 (585)
Q Consensus 571 ~~~~~~~~~ 579 (585)
.+.++++++
T Consensus 562 ~~~~~~~~~ 570 (570)
T 2vbf_A 562 GKLFAEQNK 570 (570)
T ss_dssp HHHHHHHTC
T ss_pred HHHhhhccC
Confidence 998887653
No 7
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=100.00 E-value=3.1e-90 Score=758.34 Aligned_cols=512 Identities=18% Similarity=0.220 Sum_probs=426.4
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (585)
.++++++|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||||+||+ +||++|+|||++|+
T Consensus 2 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~i~~i~~~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N~ 81 (549)
T 3eya_A 2 KQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHL 81 (549)
T ss_dssp CCBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTT
T ss_pred CccHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHhcCCCeEEEeCChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhhh
Confidence 47999999999999999999999999999999999876789999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcCC
Q 007917 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK 184 (585)
Q Consensus 105 ~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~g 184 (585)
++||++|+.+++|||+|||++|....+++ .+ |..||.++|+++|||+.++.+++++++.+++||+.|.+++|
T Consensus 82 ~~gi~~A~~~~vPvl~itg~~~~~~~~~~-----~~---Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~G 153 (549)
T 3eya_A 82 INGLFDCHRNHVPVLAIAAHIPSSEIGSG-----YF---QETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRG 153 (549)
T ss_dssp HHHHHHHHHTTCCEEEEEEESCGGGTTSC-----CT---TCCCHHHHTSTTCSEEEECCSGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhCCCEEEEeCCCchhhcCCC-----CC---CccCHHHHHhhhhheEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999877664 22 34689999999999999999999999999999999999899
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCC
Q 007917 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (585)
Q Consensus 185 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~ 264 (585)
||||+||.|++..+.+.... +....... ....++++.+++++++|.+||||+|++|.|+. ++.+++.+|||++++
T Consensus 154 PV~l~iP~dv~~~~~~~~~~-~~~~~~~~--~~~~~~~~~i~~~~~~l~~A~rpvIl~G~g~~--~a~~~l~~lae~~~~ 228 (549)
T 3eya_A 154 VSVVVLPGDVALKPAPEGAT-MHWYHAPQ--PVVTPEEEELRKLAQLLRYSSNIALMCGSGCA--GAHKELVEFAGKIKA 228 (549)
T ss_dssp EEEEEEEHHHHTSBCCTTCC-CCCCCCCC--CEEECCHHHHHHHHHHHHTCCSEEEEECGGGT--TCHHHHHHHHHHHTC
T ss_pred CEEEEeChhHhhcccCcccc-ccccccCC--CCCCCCHHHHHHHHHHHHhCCCcEEEECCCch--HHHHHHHHHHHHhCC
Confidence 99999999997743221111 00000111 11123456799999999999999999999984 688999999999999
Q ss_pred CeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecCCC
Q 007917 265 PIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGP 344 (585)
Q Consensus 265 Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~~~ 344 (585)
||++|++|||+||++||+++|++ |..++..+++++++||+||+||++++... .+.++.++||||+|+.+++ ..
T Consensus 229 Pv~~t~~gkg~~~~~hp~~~G~~-G~~~~~~~~~~~~~aDlvl~iG~~~~~~~-----~~~~~~~~i~id~d~~~~~-~~ 301 (549)
T 3eya_A 229 PIVHALRGKEHVEYDNPYDVGMT-GLIGFSSGFHTMMNADTLVLLGTQFPYRA-----FYPTDAKIIQIDINPASIG-AH 301 (549)
T ss_dssp CEEECGGGHHHHSSSCTTBCCCC-STTSCHHHHHHHHHCSEEEEESCCCCCGG-----GSCSSSEEEEEESCGGGTT-SS
T ss_pred CEEECCccCcCCCCCCcccccCC-CCCCCHHHHHHHHhCCEEEEECCCCCccc-----cCCCCCeEEEEeCCHHHhC-CC
Confidence 99999999999999999999996 88888889999999999999999886331 1234568999999999886 33
Q ss_pred ccc----cccHHHHHHHHHHHhccCcc--chhhhhhcc---CCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEecCC
Q 007917 345 SLG----WVFMADFLSALAKKLRKNTT--ALENYRRIY---VPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETG 415 (585)
Q Consensus 345 ~~~----~~~~~~~l~~L~~~l~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d~G 415 (585)
+.. ..|++.+|++|.+.+..... +...|.+.. ...........+.++++..+++.|++.++++++++.|+|
T Consensus 302 ~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G 381 (549)
T 3eya_A 302 SKVDMALVGDIKSTLRALLPLVEEKADRKFLDKALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFAADDAIFTCDVG 381 (549)
T ss_dssp SCCSEEEECCHHHHHHHHGGGSCCCCCCHHHHHHHHHHHHHHHHHHHTSCCCSSCBCHHHHHHHHHHHSCTTCEEEECTT
T ss_pred CCCCeEEEeCHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHhhCCCCCEEEEcCc
Confidence 222 24899999999887754321 222221100 000000001123579999999999999999999999999
Q ss_pred cccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCC
Q 007917 416 DSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNG 490 (585)
Q Consensus 416 ~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~ 490 (585)
++.+|. .++..+++.+++.+.++|+||+++|+|+|+++|+|+++||+++|||||+ ||+|++++++|+++||+||+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~~ivv~nN~ 461 (549)
T 3eya_A 382 TPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNS 461 (549)
T ss_dssp HHHHHHHHHCCCCSSCEEECCTTTCCTTCHHHHHHHHHHHSTTSCEEEEEEHHHHHHTGGGHHHHHHTTCCCEEEEEECS
T ss_pred HHHHHHHHhCccCCCCcEEeCCCCchhhhHHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCCeEEEEEeCC
Confidence 998775 4456666677999999999999999999999999999999999999998 99999999999999999999
Q ss_pred ceeeeee-ec----CCCCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCCh
Q 007917 491 GYTIEVE-IH----DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTS 564 (585)
Q Consensus 491 ~~~~~~~-~~----~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~~ 564 (585)
+|++... +. ...++++.++||.++|++||+ ++++|++++||+++|+++++ .+||+||||.+++++.+
T Consensus 462 ~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~l~~al~~a~~--~~gp~liev~~~~~~~~ 533 (549)
T 3eya_A 462 VLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGI-----TGIRVEKASEVDEALQRAFS--IDGPVLVDVVVAKEELA 533 (549)
T ss_dssp BCCCC------------CCBCCCCCHHHHHHHTTS-----EEEEECSGGGHHHHHHHHHH--SSSCEEEEEEBCCCCSC
T ss_pred ccHHHHHHHHhcCCCCcCCcCCCCCHHHHHHHcCC-----cEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEecccccc
Confidence 9998321 11 124566788999999999999 99999999999999999997 78999999999998865
No 8
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=100.00 E-value=1.5e-88 Score=752.04 Aligned_cols=513 Identities=17% Similarity=0.226 Sum_probs=425.6
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-CCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-PELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~-~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (585)
.++++++|++.|+++||++|||+||+++++|+++|.++ ++|++|.++||++|+|||+||||+||+ +||++|+|||++|
T Consensus 10 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~dal~~~~~~i~~i~~~hE~~Aa~aA~GyAr~tg~~gv~~~TsGpG~~N 89 (603)
T 4feg_A 10 NILAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTH 89 (603)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHTTTTSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHT
T ss_pred eeeHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHHHhccCCCeEEEecChHHHHHHHHHHHHHhCCceEEEecCCchHHH
Confidence 58999999999999999999999999999999999875 589999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhcC
Q 007917 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKES 183 (585)
Q Consensus 104 ~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~~ 183 (585)
+++||++|+.+++|||+|+|++|+...+++ .+ |..||..+|+++|||+.++.+++++++.|++||+.|.+++
T Consensus 90 ~~~gia~A~~~~vPvl~itG~~~~~~~~~~-----~~---Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~ 161 (603)
T 4feg_A 90 LMNGLYDAREDHVPVLALIGQFGTTGMNMD-----TF---QEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQ 161 (603)
T ss_dssp THHHHHHHHHTTCCEEEEEEECCTTTTTSC-----CT---TCCCCGGGGTTTCSEEEECCCSTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEEecCCcccccCCC-----cc---ccccHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999877765 22 3457899999999999999999999999999999999989
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhC
Q 007917 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (585)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~ 263 (585)
|||||+||.|++..+.+... .+.+...........++++.+++++++|.+||||+|++|.|+ .++.+++.+|||+++
T Consensus 162 GPV~l~iP~dv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~A~rPvIl~G~g~--~~a~~~l~~lae~~~ 238 (603)
T 4feg_A 162 GVAVVQIPVDLPWQQIPAED-WYASANSYQTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGA--RKAGKELEQLSKTLK 238 (603)
T ss_dssp SEEEEEEETTGGGSEEETTT-CCCCGGGCCCCCCCBCCHHHHHHHHHHHHHCSSEEEEECGGG--TTCHHHHHHHHHHHT
T ss_pred CCEEEEeChhhhhccCCccc-ccccccccCCCCCCCCCHHHHHHHHHHHhcCCCeEEEECCCc--hhHHHHHHHHHHHHC
Confidence 99999999999764211110 010110100001112345679999999999999999999999 468999999999999
Q ss_pred CCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccc-cccCCCcceEEEcCCceeecC
Q 007917 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGY-SLLIKKEKAIIVQPHRVTVGN 342 (585)
Q Consensus 264 ~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~-~~~~~~~~~i~id~~~~~~~~ 342 (585)
+||++|++|||.||++||+++|.+ |..+++.+++++++||+||+||++++.. .| ..+.++.++||||+|+.+++
T Consensus 239 ~PV~~t~~gkg~~~~~hp~~~G~~-g~~~~~~~~~~l~~aDlvl~iG~~~~~~---~~~~~~~~~~~~i~id~d~~~~~- 313 (603)
T 4feg_A 239 IPLMSTYPAKGIVADRYPAYLGSA-NRVAQKPANEALAQADVVLFVGNNYPFA---EVSKAFKNTRYFLQIDIDPAKLG- 313 (603)
T ss_dssp CCEEECGGGTTSSCTTCTTBCCCC-SSSSCHHHHHHHHHCSEEEEESCCCTTT---TTTTTTTTCSEEEEEESCGGGTT-
T ss_pred CCEEEcCccccCCCCCChhhcccC-cccCcHHHHHHHHhCCEEEEECCCCCcc---cccccCCCCCeEEEEeCCHHHhC-
Confidence 999999999999999999999996 7888889999999999999999998742 23 23445678999999999887
Q ss_pred CCcccc----ccHHHHHHHHHHHhccCcc--chhhhhhc---cCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEec
Q 007917 343 GPSLGW----VFMADFLSALAKKLRKNTT--ALENYRRI---YVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAE 413 (585)
Q Consensus 343 ~~~~~~----~~~~~~l~~L~~~l~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d 413 (585)
+.+..+ .|++.+|++|.+.+..... ++..+.+. +.............++++.++++.|++.++++++++.|
T Consensus 314 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d 393 (603)
T 4feg_A 314 KRHKTDIAVLADAQKTLAAILAQVSERESTPWWQANLANVKNWRAYLASLEDKQEGPLQAYQVLRAVNKIAEPDAIYSID 393 (603)
T ss_dssp SSSCCSEEEESCHHHHHHHHHHTCCCCCCCHHHHHHHHHHHHHHHHHHHHHTCCSSBCCHHHHHHHHHHHCCTTCEEEEC
T ss_pred CccCCCEEEEeCHHHHHHHHHHhhhccCChHHHHHHHHHHHHHHHHhhhhhcCCCCCcCHHHHHHHHHHhCCCCCEEEEC
Confidence 333322 4899999999988764321 11111100 00000000112345799999999999999999999999
Q ss_pred CCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEe
Q 007917 414 TGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLIN 488 (585)
Q Consensus 414 ~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~N 488 (585)
+|++..|. .++..+.+.+++.+.++|+||+++|+|+|++++.|+++||+++|||+|+ ||+|++++++|+++||+|
T Consensus 394 ~G~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~l~~A~Gaala~~~~~vv~~~GDG~~~~~~~~l~~a~~~~lp~~~vv~n 473 (603)
T 4feg_A 394 VGDINLNANRHLKLTPSNRHITSNLFATMGVGIPGAIAAKLNYPERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFT 473 (603)
T ss_dssp SSHHHHHHHHHCCCCTTCEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHHTTCCCEEEEEE
T ss_pred CchHHHHHHHhceeCCCCceecCcccccccchhHHHhhHHHhCCCCcEEEEeccHHHhhhHHHHHHHHHHCcCeEEEEEE
Confidence 99997664 4566666677999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCceeeeeee----cCC-C-CCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhh--hcCCCCeEEEEEEcCC
Q 007917 489 NGGYTIEVEI----HDG-P-YNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTAT--GEQKDSLCFIEVFVHK 560 (585)
Q Consensus 489 N~~~~~~~~~----~~~-~-~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~--~~~~~gp~vIeV~v~~ 560 (585)
|++|++.+.. ... . .+.+..+||.++|++||+ ++++|++.++|+++|++++ + .+||+||||.+++
T Consensus 474 N~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~l~~al~~a~~~~--~~gP~lIev~~~~ 546 (603)
T 4feg_A 474 NCQYGFIKDEQEDTNQNDFIGVEFNDIDFSKIADGVHM-----QAFRVNKIEQLPDVFEQAKAIA--QHEPVLIDAVITG 546 (603)
T ss_dssp CSBCHHHHHHHHHHCSSCCCSSBCCCCCHHHHHHHTTC-----EEEEECBGGGHHHHHHHHHHHT--TTSCEEEEEECCC
T ss_pred CCchHHHHHHHHHhcCCCcccCcCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHHhc--CCCcEEEEEEeCC
Confidence 9999972111 122 2 234578999999999999 9999999999999999998 6 7899999999976
Q ss_pred C
Q 007917 561 D 561 (585)
Q Consensus 561 ~ 561 (585)
.
T Consensus 547 ~ 547 (603)
T 4feg_A 547 D 547 (603)
T ss_dssp C
T ss_pred C
Confidence 4
No 9
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=100.00 E-value=1.1e-88 Score=752.24 Aligned_cols=516 Identities=18% Similarity=0.244 Sum_probs=428.8
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHH
Q 007917 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (585)
Q Consensus 25 ~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (585)
..++++++|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||||+||+ +||++|+|||++|
T Consensus 10 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N 89 (590)
T 1ybh_A 10 QPRKGADILVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATN 89 (590)
T ss_dssp CCEEHHHHHHHHHHTTTCCEEEECCCGGGHHHHHHHHHCSSCEECCCSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHT
T ss_pred CCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHhccCCccEEeeCCHHHHHHHHHHHHHHHCCCEEEEeccCchHHH
Confidence 457999999999999999999999999999999999877789999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-
Q 007917 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (585)
Q Consensus 104 ~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (585)
+++||++|+.+++|||+|+|++|....+++ . .|..||.++|+++|||+.++.+++++++.+++||+.|.++
T Consensus 90 ~~~gv~~A~~~~vPll~itg~~~~~~~g~~-----~---~Q~~d~~~~~~~~~k~~~~v~~~~~i~~~l~~A~~~a~~~~ 161 (590)
T 1ybh_A 90 LVSGLADALLDSVPLVAITGQVPRRMIGTD-----A---FQETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGR 161 (590)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCGGGTTTT-----C---TTCCCHHHHHGGGSSEEEECCCGGGHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHhhCCCEEEEeCcCCccccCCC-----c---ccccCHHHHHHHHhCeEEecCCHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999877664 2 2346899999999999999999999999999999999986
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCcc-CCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHH
Q 007917 183 SKPVYISISCNLPGIPHPTFARDPVPFF-LAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (585)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~ 261 (585)
||||||+||.|++..+.+...+...... ..+. ....++++.+++++++|.+++||+|++|.|+.+++ +++.+|||+
T Consensus 162 ~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~--~~l~~lae~ 238 (590)
T 1ybh_A 162 PGPVLVDVPKDIQQQLAIPNWEQAMRLPGYMSR-MPKPPEDSHLEQIVRLISESKKPVLYVGGGCLNSS--DELGRFVEL 238 (590)
T ss_dssp CCEEEEEEEHHHHHCEECCCTTCCCCCHHHHHH-SCCCCCHHHHHHHHHHHHHCSSEEEEECGGGTTCH--HHHHHHHHH
T ss_pred CceEEEEeCcchhhhhcccccccccccccCCCC-CCCCCCHHHHHHHHHHHHhCCCcEEEECcccccCH--HHHHHHHHH
Confidence 6999999999996532111101000000 0000 00011356799999999999999999999998865 999999999
Q ss_pred hCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeec
Q 007917 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (585)
Q Consensus 262 l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~ 341 (585)
+++||++|++|||.||++||+++|.+ |..++..+++++.++|+||.||+++++..+..+..+.++.++||||+|+.+++
T Consensus 239 ~~~Pv~~t~~g~g~~~~~hp~~~G~~-g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 317 (590)
T 1ybh_A 239 TGIPVASTLMGLGSYPADDELSLHML-GMHGTVYANYAVEHSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIG 317 (590)
T ss_dssp HCCCEEECTTTTTSSCTTSTTEEEEC-STTSCHHHHHHHHHCSEEEEESCCCCHHHHSSGGGTTTTSEEEEEESCTTTTT
T ss_pred hCCCEEEchhhcCcCCCCCchhcCCc-ccccCHHHHHHHHhCCEEEEEcCCCCccccCcccccCCCCeEEEEECCHHHhC
Confidence 99999999999999999999999995 88888889999999999999999998877766666666778999999998886
Q ss_pred CCCccc----cccHHHHHHHHHHHhccCc-------cch-hh---hhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCC
Q 007917 342 NGPSLG----WVFMADFLSALAKKLRKNT-------TAL-EN---YRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSG 406 (585)
Q Consensus 342 ~~~~~~----~~~~~~~l~~L~~~l~~~~-------~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 406 (585)
+.+.. ..|++.+|++|.+.+.... ..| .. +++.. ... ......++++..+++.|++.+|+
T Consensus 318 -~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~~l~~~lp~ 392 (590)
T 1ybh_A 318 -KNKTPHVSVCGDVKLALQGMNKVLENRAEELKLDFGVWRNELNVQKQKF-PLS---FKTFGEAIPPQYAIKVLDELTDG 392 (590)
T ss_dssp -SSSCCSEEEESCHHHHHHHHHHHHHHTHHHHCCCCHHHHHHHHHHHHHS-CCC---CCCCTTBCCHHHHHHHHHHHTTT
T ss_pred -CCcCCCeEEecCHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhh-hhh---cccccCCcCHHHHHHHHHHhCCC
Confidence 33322 2488999999988765321 112 11 11111 110 01123468999999999999999
Q ss_pred CCEEEecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCC
Q 007917 407 DTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQR 481 (585)
Q Consensus 407 ~~ii~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lp 481 (585)
+++++.|+|++..|. .++..+++.+|+.++++|+||+++|+|+|+++|.|+++||+++|||+|+ ||+|++++++|
T Consensus 393 ~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~~~l~ 472 (590)
T 1ybh_A 393 KAIISTGVGQHQMWAAQFYNYKKPRQWLSSGGLGAMGFGLPAAIGASVANPDAIVVDIDGDGSFIMNVQELATIRVENLP 472 (590)
T ss_dssp CCEEEECSSHHHHHHHHSCCCSSTTSEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHTTTHHHHHHHTTCC
T ss_pred CCEEEEcCcHHHHHHHHhcccCCCCeEEeCCCcccccchHHHHHHHHHhCCCCcEEEEEccchhhccHHHHHHHHHhCCC
Confidence 999999999987554 4566666677999999999999999999999999999999999999999 99999999999
Q ss_pred eEEEEEeCCceeeeee----ecCCC--CCCC--------CCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcC
Q 007917 482 SIIFLINNGGYTIEVE----IHDGP--YNVI--------KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQ 547 (585)
Q Consensus 482 v~ivV~NN~~~~~~~~----~~~~~--~~~~--------~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~ 547 (585)
+++||+||++|++... .+.+. .+.+ ..+||.++|++||+ ++++|++.+||+++|+++++
T Consensus 473 ~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~-- 545 (590)
T 1ybh_A 473 VKVLLLNNQHLGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGI-----PAARVTKKADLREAIQTMLD-- 545 (590)
T ss_dssp EEEEEEECSBCHHHHHHHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHHTTC-----CEEEECBHHHHHHHHHHHHH--
T ss_pred cEEEEEECCcchHHHHHHHHhcCCccccccccccccccCCCCCHHHHHHHcCC-----eEEEeCCHHHHHHHHHHHHh--
Confidence 9999999999998321 12222 1222 26899999999999 99999999999999999997
Q ss_pred CCCeEEEEEEcCCCCCh
Q 007917 548 KDSLCFIEVFVHKDDTS 564 (585)
Q Consensus 548 ~~gp~vIeV~v~~~~~~ 564 (585)
.+||+||||.+++.+..
T Consensus 546 ~~gp~liev~~~~~~~~ 562 (590)
T 1ybh_A 546 TPGPYLLDVICPHQEHV 562 (590)
T ss_dssp SSSCEEEEEECCTTCCC
T ss_pred CCCCEEEEEEecCCccc
Confidence 78999999999988753
No 10
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=100.00 E-value=2.2e-88 Score=745.73 Aligned_cols=512 Identities=16% Similarity=0.198 Sum_probs=424.3
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHH
Q 007917 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (585)
++++++|++.|+++||++|||+||+++++|+++|.+ ++|++|.++||++|+|||+||||+||+ +||++|+|||++|++
T Consensus 11 ~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~-~~i~~v~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~ 89 (566)
T 1ozh_A 11 AHGADLVVSQLEAQGVRQVFGIPGAKIDKVFDSLLD-SSIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLI 89 (566)
T ss_dssp SCHHHHHHHHHHHHTCCEEEEECCTTTHHHHHHGGG-SSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTH
T ss_pred CcHHHHHHHHHHHCCCCEEEEcCCCchHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHHHHHCCCEEEEEccChHHHHHH
Confidence 789999999999999999999999999999999987 689999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-CC
Q 007917 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (585)
Q Consensus 106 ~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~g 184 (585)
+||++|+.+++|||+|||++|....+++. +|..||..+|+++|||+.++.+++++++.+++||+.|.++ ||
T Consensus 90 ~~l~~A~~~~vPll~itg~~~~~~~~~~~--------~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~r~G 161 (566)
T 1ozh_A 90 TGMATANSEGDPVVALGGAVKRADKAKQV--------HQSMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPG 161 (566)
T ss_dssp HHHHHHHHHTCCEEEEEEECCTTTC--------------CCCHHHHHGGGCSEEEECCSGGGHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHhcCCCEEEEeCCCccccCCCCc--------ccccCHHHHHHHHhheEEEcCCHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999998776541 2346899999999999999999999999999999999987 69
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCC
Q 007917 185 PVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGY 264 (585)
Q Consensus 185 PV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~ 264 (585)
||||+||.|++.. +.....+......... .+.++.+++++++|.+++||+|++|.|+.++++.+++++|||++++
T Consensus 162 PV~l~iP~dv~~~--~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~ 236 (566)
T 1ozh_A 162 SAFVSLPQDVVDG--PVSGKVLPASGAPQMG---AAPDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHI 236 (566)
T ss_dssp EEEEEEEHHHHHS--CEEECCCCCCCSCEEC---CSCHHHHHHHHHHHHHCSSEEEEECGGGGSGGGHHHHHHHHHHHCC
T ss_pred eEEEEeChhhhhc--cccccccccccccCCC---CCCHHHHHHHHHHHHcCCCeEEEECCCcccccHHHHHHHHHHHHCC
Confidence 9999999998642 2211110000011001 1234678999999999999999999999988999999999999999
Q ss_pred CeEEccCCccCCCCCCC-CceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecCC
Q 007917 265 PIAIMPSGKGLVPEHHP-HFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNG 343 (585)
Q Consensus 265 Pv~~t~~gkg~~~~~hp-~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~~ 343 (585)
||++|++|||.+|++|| +++|.+ |..+++.++++++++|+||.||+.+....+..|. .++.++||||+|+.+++ +
T Consensus 237 Pv~~t~~~kg~~~~~~p~~~~G~~-g~~~~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~--~~~~~~i~id~d~~~~~-~ 312 (566)
T 1ozh_A 237 PVTSTYQAAGAVNQDNFSRFAGRV-GLFNNQAGDRLLQLADLVICIGYSPVEYEPAMWN--SGNATLVHIDVLPAYEE-R 312 (566)
T ss_dssp CEEECGGGTTTCCTTTCTTEEEEC-SSBTTCHHHHHHHHCSEEEEESCCGGGSCGGGTC--CSCSEEEEEESSCCCCB-T
T ss_pred CEEEccccCCcCCCCChHhhcCCC-cccCCHHHHHHHHhCCEEEEECCCCCcCCccccC--CCCCcEEEEeCCHHHhC-C
Confidence 99999999999999999 999997 8888888899999999999999965444333343 23568999999999887 3
Q ss_pred Cccc----cccHHHHHHHHHHHhccCc--c-chhhhh---hccCCCCCCCCCCCCCC-CCHHHHHHHHHhhCCCCCEEEe
Q 007917 344 PSLG----WVFMADFLSALAKKLRKNT--T-ALENYR---RIYVPPGIPVKRAQNEP-LRVNVLFKHIQDMLSGDTAVIA 412 (585)
Q Consensus 344 ~~~~----~~~~~~~l~~L~~~l~~~~--~-~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~l~~~~ii~~ 412 (585)
.+.. ..|++.+|++|.+.+.... . ++..+. +.............+.+ +++..+++.|++.++++++++.
T Consensus 313 ~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~l~~~l~~~~iv~~ 392 (566)
T 1ozh_A 313 NYTPDVELVGDIAGTLNKLAQNIDHRLVLSPQAAEILRDRQHQRELLDRRGAQLNQFALHPLRIVRAMQDIVNSDVTLTV 392 (566)
T ss_dssp TBCCSEEEESCHHHHHHHHHHTCCSCCCCCHHHHHHHHHHHHHHHHHHC-CCCCCCSSBCHHHHHHHHHHHCCTTEEEEE
T ss_pred CCCCCEEEEeCHHHHHHHHHHhccccCCcHHHHHHHHHHHHHhHhhhhhccccCCCCCcCHHHHHHHHHHhCCCCCEEEE
Confidence 3332 2489999999988775422 1 222221 11000000000122345 9999999999999999999999
Q ss_pred cCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEE
Q 007917 413 ETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLI 487 (585)
Q Consensus 413 d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~ 487 (585)
|+|++..|. .++...++.+++.+.++|+||+++|+|+|+++|.|+++||+++|||+|+ ||+|++++++|+++||+
T Consensus 393 d~G~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~~ivv~ 472 (566)
T 1ozh_A 393 DMGSFHIWIARYLYTFRARQVMISNGQQTMGVALPWAIGAWLVNPERKVVSVSGDGGFLQSSMELETAVRLKANVLHLIW 472 (566)
T ss_dssp CSSHHHHHHHHTGGGCCCSEEECCCTTCCTTCHHHHHHHHHHHSTTSEEEEEEEHHHHHHHTTHHHHHHHHTCCEEEEEE
T ss_pred cCcHHHHHHHHhcccCCCCeEEeCCCcccccchHHHHHHHHHhCCCCCEEEEEcChHHhccHHHHHHHHHhCCCcEEEEE
Confidence 999987654 4455566677999999999999999999999999999999999999998 99999999999999999
Q ss_pred eCCceeeeeee----cCCCC-CCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCC
Q 007917 488 NNGGYTIEVEI----HDGPY-NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 562 (585)
Q Consensus 488 NN~~~~~~~~~----~~~~~-~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~ 562 (585)
||++|++.... ++..| +++.++||.++|++||+ ++++|++.+||+++|+++++ .+||+||||.+++++
T Consensus 473 nN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~gp~liev~~~~~~ 545 (566)
T 1ozh_A 473 VDNGYNMVAIQEEKKYQRLSGVEFGPMDFKAYAESFGA-----KGFAVESAEALEPTLRAAMD--VDGPAVVAIPVDYRD 545 (566)
T ss_dssp ECSBCHHHHHHHHHHHSSCCSCBCCCCCHHHHHHTTTS-----EEEECCSGGGHHHHHHHHHH--SSSCEEEEEEBCCTT
T ss_pred ECCchhHHHHHHHHhcCCCccCcCCCCCHHHHHHHcCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEEEeCCCc
Confidence 99999984321 23444 46678999999999999 99999999999999999996 789999999999988
Q ss_pred C
Q 007917 563 T 563 (585)
Q Consensus 563 ~ 563 (585)
.
T Consensus 546 ~ 546 (566)
T 1ozh_A 546 N 546 (566)
T ss_dssp H
T ss_pred C
Confidence 7
No 11
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=100.00 E-value=4.7e-88 Score=752.62 Aligned_cols=518 Identities=20% Similarity=0.267 Sum_probs=427.1
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHH
Q 007917 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (585)
++++++|++.|+++||++|||+||+++++|+++|.++++|++|.++||++|+|||+||||+||+ +||++|+|||++|++
T Consensus 82 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~pl~dal~~~~~i~~v~~~hE~~Aa~aAdGyAr~tGkpgvv~~TsGpG~~N~~ 161 (677)
T 1t9b_A 82 LTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVV 161 (677)
T ss_dssp CBHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHTTTCSSSEEECCSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTH
T ss_pred CCHHHHHHHHHHHcCCCEEEEecCccHHHHHHHHHhCCCCeEEEeCChHHHHHHHHHHHHHHCCCEEEEECCChHHHHHH
Confidence 7999999999999999999999999999999999877789999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-CC
Q 007917 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-SK 184 (585)
Q Consensus 106 ~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~g 184 (585)
+||++|+.+++|||+|||++++...+++. .|..||..+++++|||+.++.+++++++.|++||+.|.++ ||
T Consensus 162 ~gia~A~~d~vPllvItG~~~~~~~g~~a--------~Q~~Dq~~i~~~~tk~~~~v~~~~~i~~~i~~A~~~A~~grpG 233 (677)
T 1t9b_A 162 TPMADAFADGIPMVVFTGQVPTSAIGTDA--------FQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPG 233 (677)
T ss_dssp HHHHHHHHHTCCEEEEEEECCTTTTTSCC--------TTCCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHcCCCEEEEeCCCChhhcCCCC--------ccccCHHHHhhhheeEEEEcCCHHHHHHHHHHHHHHHhhCCCc
Confidence 99999999999999999999998777652 2456899999999999999999999999999999999986 79
Q ss_pred cEEEEecCCCCCCCC--CCCCCCCCCccC--CCC-CCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchh-chHHHHHHH
Q 007917 185 PVYISISCNLPGIPH--PTFARDPVPFFL--APK-VSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVA-KAQKAFIEL 258 (585)
Q Consensus 185 PV~i~iP~dv~~~~~--~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~-~a~~~l~~l 258 (585)
||||+||.|++..+. +.......+... .+. .......++.+++++++|.+++||+|++|.|+.++ .+.++|.+|
T Consensus 234 PV~l~lP~Dv~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvIl~G~g~~~~~~~~~~l~~l 313 (677)
T 1t9b_A 234 PVLVDLPKDVTAAILRNPIPTKTTLPSNALNQLTSRAQDEFVMQSINKAADLINLAKKPVLYVGAGILNHADGPRLLKEL 313 (677)
T ss_dssp EEEEEEEHHHHHSBCCSCBC--------------------CHHHHHHHHHHHHHTCSSEEEEECGGGGGSTTHHHHHHHH
T ss_pred eEEEEcCHHHhhhhcccccccccccccccccCCCccccccCCHHHHHHHHHHHHhCCCeEEEECcccccCchhHHHHHHH
Confidence 999999999865311 110000000000 000 00001234679999999999999999999999766 477999999
Q ss_pred HHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcc---------
Q 007917 259 ADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEK--------- 329 (585)
Q Consensus 259 ae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~--------- 329 (585)
||++++||++|++|||+||++||+++|++ |..++..+++++++||+||.||+++++..+..+..+.++.+
T Consensus 314 ae~~~~PV~tt~~gkg~~~~~hpl~lG~~-G~~g~~~~~~~l~~aDlvl~iG~r~~~~~t~~~~~~~~~~~~~~~~~~~~ 392 (677)
T 1t9b_A 314 SDRAQIPVTTTLQGLGSFDQEDPKSLDML-GMHGCATANLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGG 392 (677)
T ss_dssp HHHTTCCEEECGGGTTSSCTTSTTEEEEC-STTSCHHHHHHHHHCSEEEEESCCCCTTTSCSGGGSSHHHHHHHHTTSCE
T ss_pred HHHhCCCeeeccccCccCCCCCccccCcC-CccCcHHHHHHHhcCCEEEEECCccCcccccCccccCcccccccccCCce
Confidence 99999999999999999999999999985 88888888999999999999999999888776665555555
Q ss_pred eEEEcCCceeecCCCccc----cccHHHHHHHHHHHhcc-Cc-cch-h---hhhhccCCCCCCCCCCCCCCCCHHHHHHH
Q 007917 330 AIIVQPHRVTVGNGPSLG----WVFMADFLSALAKKLRK-NT-TAL-E---NYRRIYVPPGIPVKRAQNEPLRVNVLFKH 399 (585)
Q Consensus 330 ~i~id~~~~~~~~~~~~~----~~~~~~~l~~L~~~l~~-~~-~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (585)
+||||+|+.+++ ..+.. ..|++.+|++|.+.+.. .. ..| . .|++...... . ......++++..+++.
T Consensus 393 iI~idid~~~~~-~~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~~~~~~-~-~~~~~~~l~~~~v~~~ 469 (677)
T 1t9b_A 393 IIHFEVSPKNIN-KVVQTQIAVEGDATTNLGKMMSKIFPVKERSEWFAQINKWKKEYPYAY-M-EETPGSKIKPQTVIKK 469 (677)
T ss_dssp EEEEESCGGGSS-SSSCCSEEEESCHHHHHHHHHTTSCCCCCCHHHHHHHHHHHHHSCCCC-C-CCCTTCCBCHHHHHHH
T ss_pred EEEEECCHHHhC-CcccCCEEEeCCHHHHHHHHHHHhhccccchHHHHHHHHHHHhccccc-c-cccCCCCcCHHHHHHH
Confidence 999999999886 33222 24899999999887754 11 112 1 2222211110 1 1122356999999999
Q ss_pred HHhhC---CCCCEEEecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----h
Q 007917 400 IQDML---SGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----E 471 (585)
Q Consensus 400 L~~~l---~~~~ii~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----e 471 (585)
|++.+ +++.++..|+|++.+|. .++..+++.+++.++++|+||+++|+|+|+++|+|+++|||++|||+|+ |
T Consensus 470 L~~~l~~~~~~~iv~~~vg~~~~~~~~~~~~~~p~~~~~sg~~G~mG~~lpaAiGaalA~p~~~Vv~i~GDGsf~~~~~e 549 (677)
T 1t9b_A 470 LSKVANDTGRHVIVTTGVGQHQMWAAQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDIDGDASFNMTLTE 549 (677)
T ss_dssp HHHHHHTTCSCEEEEECSSHHHHHHHHHSCCCSTTCEECCCSSCCTTCHHHHHHHHHHHCTTSEEEEEEEHHHHHHHGGG
T ss_pred HHHHhhcCCCCEEEEeCCchHHHHHHHhcccCCCCeEEeCCCcchhhchHHHHHHHHHhCCCCeEEEEEeehHHhccHHH
Confidence 99998 67788888999887664 4566666677999999999999999999999999999999999999998 9
Q ss_pred HHHHHHhCCCeEEEEEeCCceeeeeee----cCCCC--CCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh
Q 007917 472 ISTMIRCGQRSIIFLINNGGYTIEVEI----HDGPY--NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG 545 (585)
Q Consensus 472 L~ta~~~~lpv~ivV~NN~~~~~~~~~----~~~~~--~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~ 545 (585)
|+|++++++|++|||+||++|++.... +...+ ..+.++||.++|++||+ ++++|++.+||+++|+++++
T Consensus 550 L~ta~~~~l~v~ivV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~-----~~~~v~~~~el~~al~~a~~ 624 (677)
T 1t9b_A 550 LSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQLNPDFIKLAEAMGL-----KGLRVKKQEELDAKLKEFVS 624 (677)
T ss_dssp HHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTTCCCSCCCCCCCHHHHHHHTTC-----EEEEECSHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCeEEEEEeCCCchhhhhhhhhhcCCCcccCcCCCCCHHHHHHHcCC-----eEEEECCHHHHHHHHHHHHH
Confidence 999999999999999999999983221 22222 23567899999999999 99999999999999999996
Q ss_pred cCCCCeEEEEEEcCCCCC
Q 007917 546 EQKDSLCFIEVFVHKDDT 563 (585)
Q Consensus 546 ~~~~gp~vIeV~v~~~~~ 563 (585)
.++|+||||.+++.+.
T Consensus 625 --~~gp~lIev~~~~~~~ 640 (677)
T 1t9b_A 625 --TKGPVLLEVEVDKKVP 640 (677)
T ss_dssp --CSSCEEEEEEBCSSCC
T ss_pred --CCCcEEEEEEecCCcc
Confidence 7899999999998765
No 12
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=100.00 E-value=2.6e-88 Score=748.61 Aligned_cols=520 Identities=18% Similarity=0.238 Sum_probs=432.8
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-CCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchH
Q 007917 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-PELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGL 102 (585)
Q Consensus 25 ~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~-~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~ 102 (585)
..|+++++|++.|+++||++|||+||+++++|+++|.++ ++|++|.++||++|+|||+||||+||+ +||++|+|||++
T Consensus 2 ~~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~v~~~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~~ 81 (589)
T 2pgn_A 2 AIKRGADLIVEALEEYGTEQVVGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNGYNYVKDRSAAVGAWHCVGNL 81 (589)
T ss_dssp CEEEHHHHHHHHHHHTTCCEEEEECSGGGHHHHHHHHTSTTSTTCBCCSSHHHHHHHHHHHHHHHTSCCEEEEEEGGGGG
T ss_pred CCCcHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHHCCCEEEEEecCchHH
Confidence 357999999999999999999999999999999999876 679999999999999999999999999 999999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc
Q 007917 103 SVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (585)
Q Consensus 103 n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~ 182 (585)
|+++||++|+.+++|||+|||++|....+++. .+|..||.. |+++|||+.++.+++++++.+++||+.|.++
T Consensus 82 N~~~gv~~A~~~~vPll~itg~~~~~~~~~~~-------~~Q~~d~~~-~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~ 153 (589)
T 2pgn_A 82 LLHAAMQEARTGRIPAVHIGLNSDGRLAGRSE-------AAQQVPWQS-FTPIARSTQRVERLDKVGEAIHEAFRVAEGH 153 (589)
T ss_dssp GCHHHHHHHHHTTCCEEEEEEESCGGGTTCTT-------CSSCCCGGG-GTTTSSEEEECCSGGGHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhcCCCEEEEecCCcccccCCCC-------cccccChhh-ccccEEEEeecCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999998776641 123457889 9999999999999999999999999999986
Q ss_pred -CCcEEEEecCCCCCCCCCCCCCCCCCc-cCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHH
Q 007917 183 -SKPVYISISCNLPGIPHPTFARDPVPF-FLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELAD 260 (585)
Q Consensus 183 -~gPV~i~iP~dv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae 260 (585)
||||||+||.|++..+.+.....+.+. ...+... .+. +.+++++++|.+++||+|++|+|+.++++.+++.+|||
T Consensus 154 ~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~v~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae 230 (589)
T 2pgn_A 154 PAGPAYVDIPFDLTADQIDDKALVPRGATRAKSVLH--APN-EDVREAAAQLVAAKNPVILAGGGVARSGGSEALLKLAE 230 (589)
T ss_dssp SCCEEEEEEETHHHHCEEECTTTSCCCCCCCCCCCC--CCH-HHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHH
T ss_pred CCccEEEEeCHhhhhcccccccccccccccCCccCC--ChH-HHHHHHHHHHHhCCCeEEEECCCcccccHHHHHHHHHH
Confidence 599999999998642111110001111 1111001 123 67899999999999999999999998889999999999
Q ss_pred HhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceee
Q 007917 261 ATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTV 340 (585)
Q Consensus 261 ~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~ 340 (585)
++++||++|++|||.||++||+++|. .|..+++.++++++++|+||+||++++++.+. |..+.++.++||||+|+.++
T Consensus 231 ~~~~Pv~~t~~~~g~~~~~~p~~~G~-~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~-~~~~~~~~~~i~id~d~~~~ 308 (589)
T 2pgn_A 231 MVGVPVVTTSTGAGVFPETHALAMGS-AGFCGWKSANDMMAAADFVLVLGSRLSDWGIA-QGYITKMPKFVHVDTDPAVL 308 (589)
T ss_dssp HHTCCEEECTTTTTSSCTTSTTEEEE-CSTTSCHHHHHHHHHCSEEEEESCCCCTTTTT-TTTTCCCCSEEEEESCGGGT
T ss_pred HhCCCEEEccccCccCCCCChhhcCC-ccccCCHHHHHHHhhCCEEEEECCCccccccc-ccccCCCCeEEEEeCCHHHH
Confidence 99999999999999999999999999 48888888999999999999999999888776 76665677899999999988
Q ss_pred cCCCccc----cccHHHHHHHHHHHhcc----C------ccchh---hhhh-ccCCCCCCCCCCCCCCCCHHHHHHHHHh
Q 007917 341 GNGPSLG----WVFMADFLSALAKKLRK----N------TTALE---NYRR-IYVPPGIPVKRAQNEPLRVNVLFKHIQD 402 (585)
Q Consensus 341 ~~~~~~~----~~~~~~~l~~L~~~l~~----~------~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 402 (585)
+ +.+.. ..|++.+|++|.+.+.. . ...|. .+.+ ... ...........++++..+++.|++
T Consensus 309 ~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~l~~ 386 (589)
T 2pgn_A 309 G-TFYFPLLSVVADAKTFMEQLIEVLPGTSGFKAVRYQERENFRQATEFRAAWDG-WVREQESGDGMPASMFRAMAEVRK 386 (589)
T ss_dssp T-SSSCCSEEEECCHHHHHHHHHHHGGGSTTCCCCCGGGSTTHHHHHHHHHHHHH-HHHHHTCCCCSSCCHHHHHHHHHH
T ss_pred C-CCcCCCEEEEeCHHHHHHHHHHHhhhcccccccccccchhhccHHHHHHHHHH-HHhhhccCCCCCcCHHHHHHHHHH
Confidence 7 33322 24899999999987752 1 11222 2221 110 000000012346999999999999
Q ss_pred hCCCCCEEEecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHH
Q 007917 403 MLSGDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIR 477 (585)
Q Consensus 403 ~l~~~~ii~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~ 477 (585)
.++++++++.|+|++.+|. .++..+++.+++.++++|+||+++|+|+|+++|.|+++||+++|||+|+ ||+|+++
T Consensus 387 ~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~ 466 (589)
T 2pgn_A 387 VQRPEDIIVTDIGNHTLPMFGGAILQRPRRLVTSMAEGILGCGFPMALGAQLAEPNSRVFLGTGDGALYYHFNEFRVAVE 466 (589)
T ss_dssp TCCTTCEEEECSSTTHHHHHHHCCCSSTTCEESCTTTCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHH
T ss_pred hCCCCCEEEEcCchHHHHHHHhcccCCCCcEECCCCcchhhhHHHHHHHHHHhCCCCcEEEEEeeHHHHhhHHHHHHHHH
Confidence 9999999999999987654 4456666677999999999999999999999999999999999999998 9999999
Q ss_pred hCCCeEEEEEeCCceeeeeee----cCCCC-CCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeE
Q 007917 478 CGQRSIIFLINNGGYTIEVEI----HDGPY-NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLC 552 (585)
Q Consensus 478 ~~lpv~ivV~NN~~~~~~~~~----~~~~~-~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~ 552 (585)
+++|+++||+||++|++.... +...| +.+.++||.++|++||+ ++++|++.+||+++|+++++ .+||+
T Consensus 467 ~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~gp~ 539 (589)
T 2pgn_A 467 HKLPVITMVFTNESYGANWTLMNHQFGQNNWTEFMNPDWVGIAKAFGA-----YGESVRETGDIAGALQRAID--SGKPA 539 (589)
T ss_dssp TTCCCEEEEEECSBCHHHHHHHHHHHSSCCSCBCCCCCHHHHHHHHTC-----EEEECTTTCCHHHHHHHHHH--HCSCE
T ss_pred hCCCeEEEEEECCCcccchHHHHhhcCCCccccCCCCCHHHHHHHCCC-----eEEEECCHHHHHHHHHHHHh--CCCCE
Confidence 999999999999999984322 12233 45568999999999999 99999999999999999986 78999
Q ss_pred EEEEEcCCCCChHH
Q 007917 553 FIEVFVHKDDTSKE 566 (585)
Q Consensus 553 vIeV~v~~~~~~~~ 566 (585)
||||.+++.+...+
T Consensus 540 liev~~~~~~~~~~ 553 (589)
T 2pgn_A 540 LIEIPVSKTQGLAS 553 (589)
T ss_dssp EEEEECCSSSSTTT
T ss_pred EEEEEecCCCCcCc
Confidence 99999998876644
No 13
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=100.00 E-value=5.4e-87 Score=730.09 Aligned_cols=507 Identities=18% Similarity=0.218 Sum_probs=423.2
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (585)
+++++++|++.|+++||++|||+||+++++|+++|. ++|++|.++||++|+|||+||||+||+ +||++|+|||++|+
T Consensus 1 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~--~~i~~i~~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~ 78 (528)
T 1q6z_A 1 MASVHGTTYELLRRQGIDTVFGNPGSNALPFLKDFP--EDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNA 78 (528)
T ss_dssp -CBHHHHHHHHHHHTTCCEEEECCCGGGHHHHTTCC--TTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHT
T ss_pred CCcHHHHHHHHHHHCCCCEEEECCCcchHHHHHHHh--hcCcEEEECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHH
Confidence 368999999999999999999999999999999994 479999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCCh-HHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-
Q 007917 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDF-TQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (585)
Q Consensus 105 ~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (585)
++||++|+.+++|||+|||++++...+++. + |. .||.++|+++|||+.++.+++++++.+++|++.|.++
T Consensus 79 ~~~l~~A~~~~~Pll~itg~~~~~~~~~~~-----~---q~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~a~~~~ 150 (528)
T 1q6z_A 79 MGALSNAWNSHSPLIVTAGQQTRAMIGVEA-----L---LTNVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAP 150 (528)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCHHHHTTTC-----T---TCCTTGGGSSTTSCSCEECCSSGGGHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHhhcCCCEEEEeCCCcccccCCCc-----c---cccccHHHHHHHhhHhhhcCCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999998777652 2 23 4789999999999999999999999999999999986
Q ss_pred CCcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHh
Q 007917 183 SKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT 262 (585)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l 262 (585)
+|||||+||.|++..+.+.. ..+.......... .++++.+++++++|.++|||+|++|.|+.++++.+++.+|||++
T Consensus 151 ~GPV~l~iP~d~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~ 227 (528)
T 1q6z_A 151 QGPVYLSVPYDDWDKDADPQ-SHHLFDRHVSSSV--RLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERL 227 (528)
T ss_dssp CCCEEEEEEGGGTTSBCCGG-GGGGTTCCCCCCC--CCCHHHHHHHHHHHHHCSSCEEEECHHHHHTTCHHHHHHHHHHH
T ss_pred CCcEEEEechhhhhCccccc-cccccccCCCCCC--CCCHHHHHHHHHHHhcCCCeEEEECCccchhhHHHHHHHHHHHH
Confidence 69999999999976321111 0000000000000 12346789999999999999999999998888999999999999
Q ss_pred CCCe-EEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCccccccccc-CCCcceEEEcCCceee
Q 007917 263 GYPI-AIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLL-IKKEKAIIVQPHRVTV 340 (585)
Q Consensus 263 ~~Pv-~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~-~~~~~~i~id~~~~~~ 340 (585)
++|| +++.+|||.||++||+++|.+ | .+++.++++++++|+||+||+++.++.+..|... .++.++||||.|+.++
T Consensus 228 ~~Pv~~~~~~g~g~~~~~~p~~~G~~-g-~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~ 305 (528)
T 1q6z_A 228 KAPVWVAPSAPRCPFPTRHPCFRGLM-P-AGIAAISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEA 305 (528)
T ss_dssp TCCEEECSSCSBCCSCTTSTTEEEEC-C-SCHHHHHHHHTTCSEEEEESSCTTCCCSCCCSCSSCTTCEEEEEESCHHHH
T ss_pred CCCEEEeccCccccCCCCCccccCcC-C-CCcHHHHHHHhcCCEEEEECCCCccccccCcCCcCCCCCeEEEEeCCHHHh
Confidence 9999 777899999999999999997 5 7778889999999999999999999888777653 3467899999999887
Q ss_pred cCCCccc----cccHHHHHHHHHHHhccCccchhhhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEEEecCCc
Q 007917 341 GNGPSLG----WVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGD 416 (585)
Q Consensus 341 ~~~~~~~----~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii~~d~G~ 416 (585)
+ +. .. ..|++.+|++|.+.+.....+..+|++.. ........++++.++++.|++.+|++++++.|+|+
T Consensus 306 ~-~~-~~~~~i~~d~~~~l~~L~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~ 378 (528)
T 1q6z_A 306 A-RA-PMGDAIVADIGAMASALANLVEESSRQLPTAAPEP-----AKVDQDAGRLHPETVFDTLNDMAPENAIYLNESTS 378 (528)
T ss_dssp H-HC-SSSEEEESCHHHHHHHHHHHSCCCCSCCCCCCCCC-----CCCCCCSSSBCHHHHHHHHHHHSCTTCEEEEECTT
T ss_pred C-CC-CCCeeEeCCHHHHHHHHHHHhhccccchHHHHhhh-----hcccccCCCcCHHHHHHHHHhhCCCCeEEEECCcc
Confidence 6 22 22 24899999999988754322211222110 00111334799999999999999999999999999
Q ss_pred cccccc-cccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEEEEeCCc
Q 007917 417 SWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNGG 491 (585)
Q Consensus 417 ~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ivV~NN~~ 491 (585)
+..|.. ++...++.+++.+.+ |+||+++|+|+|+++|.|+++||+++|||+|+ ||+|++++++|+++||+||++
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~g-g~~G~~l~~A~G~a~a~~~~~vv~~~GDG~~~~~~~~l~~a~~~~l~~~ivv~nN~~ 457 (528)
T 1q6z_A 379 TTAQMWQRLNMRNPGSYYFCAA-GGLGFALPAAIGVQLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGT 457 (528)
T ss_dssp SHHHHHHHCCCCSSSCEEECTT-CCTTSHHHHHHHHHHHCTTSCEEEEEEHHHHTTTGGGHHHHHHHTCCCEEEEEECSB
T ss_pred cHHHHHHhccccCCCcEECCCC-ccccchHHHHHHHHHhCCCCcEEEEECCcHHHhhHHHHHHHHHhCCCeEEEEEeCCc
Confidence 887653 345555566898888 99999999999999999999999999999998 999999999999999999999
Q ss_pred eeeeeee----cCC--CCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCC
Q 007917 492 YTIEVEI----HDG--PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 562 (585)
Q Consensus 492 ~~~~~~~----~~~--~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~ 562 (585)
|++.+.. +.. .+++++.+||.++|++||+ ++++|++.+||+++|+++++ .+||+||||.+++++
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~l~~al~~a~~--~~gp~liev~~~~~~ 527 (528)
T 1q6z_A 458 YGALRWFAGVLEAENVPGLDVPGIDFRALAKGYGV-----QALKADNLEQLKGSLQEALS--AKGPVLIEVSTVSPV 527 (528)
T ss_dssp CHHHHHHHHHHTCCSCCSCBCCCCCHHHHHHHHTC-----EEEEESSHHHHHHHHHHHHT--CSSCEEEEEEBCC--
T ss_pred chHhHHHHHHhcCCCcccCCCCCCCHHHHHHHcCC-----eEEEeCCHHHHHHHHHHHHH--CCCcEEEEEEecCCC
Confidence 9983221 122 2355678999999999999 99999999999999999986 789999999999865
No 14
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=100.00 E-value=4.2e-88 Score=744.09 Aligned_cols=516 Identities=21% Similarity=0.259 Sum_probs=429.1
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (585)
.|+++++|++.|+++||++|||+||+++.+|+++|.++ +|++|.++||++|+|||+||||+||+ +||++|+|||++|+
T Consensus 3 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~-~i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~ 81 (563)
T 2uz1_A 3 MITGGELVVRTLIKAGVEHLFGLHGAHIDTIFQACLDH-DVPIIDTRHEAAAGHAAEGYARAGAKLGVALVTAGGGFTNA 81 (563)
T ss_dssp EEEHHHHHHHHHHHHTCCCEEECCCGGGHHHHHHHHHH-TCCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTT
T ss_pred ccCHHHHHHHHHHHCCCCEEEECCCCchHHHHHHHHhc-CCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHHH
Confidence 48999999999999999999999999999999999865 59999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCCh-HHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-
Q 007917 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDF-TQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (585)
Q Consensus 105 ~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (585)
++||++|+.+++|||+|+|+++....+++. .|. .||.++|+++|||+.++.+++++++.+++||+.|.++
T Consensus 82 ~~~l~~A~~~~~Pll~itg~~~~~~~~~~~--------~Q~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~ 153 (563)
T 2uz1_A 82 VTPIANAWLDRTPVLFLTGSGALRDDETNT--------LQAGIDQVAMAAPITKWAHRVMATEHIPRLVMQAIRAALSAP 153 (563)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCGGGTTSCC--------TTCCCCHHHHHGGGCSEEEECCCGGGHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcccCCchh--------hhhhccHHHHhhhhhceEEEcCCHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999998777642 234 6899999999999999999999999999999999996
Q ss_pred CCcEEEEecCCCCCCC-CCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHH
Q 007917 183 SKPVYISISCNLPGIP-HPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (585)
Q Consensus 183 ~gPV~i~iP~dv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~ 261 (585)
+|||||+||.|+...+ .+.....+. ....... ..+.++.+++++++|.+++||+|++|.|+.++++.+++.+|||+
T Consensus 154 ~GPV~l~iP~dv~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~v~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~ 230 (563)
T 2uz1_A 154 RGPVLLDLPWDILMNQIDEDSVIIPD-LVLSAHG--ARPDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAA 230 (563)
T ss_dssp CCCEEEEEEHHHHHCEEEGGGSCCCC-CCCCSSC--CBCCHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHH
T ss_pred CceEEEEeCHHHhhhhcccccccccc-cccCCCC--CCCCHHHHHHHHHHHHcCCCcEEEECCccccccHHHHHHHHHHH
Confidence 6999999999953211 111100010 1010001 12235678999999999999999999999988899999999999
Q ss_pred hCCCeEEccCCccCCCCC-CCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCC-CcceEEEcCCcee
Q 007917 262 TGYPIAIMPSGKGLVPEH-HPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIK-KEKAIIVQPHRVT 339 (585)
Q Consensus 262 l~~Pv~~t~~gkg~~~~~-hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~-~~~~i~id~~~~~ 339 (585)
+++||++|++|||.||++ ||+++|.+ | .+++.+++ ++++|+||.||++++++.+..|..+.+ +.++||||.|+.+
T Consensus 231 ~~~Pv~~t~~~~g~~~~~~~p~~~G~~-g-~~~~~~~~-~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~ 307 (563)
T 2uz1_A 231 TGVPVFADYEGLSMLSGLPDAMRGGLV-Q-NLYSFAKA-DAAPDLVLMLGARFGLNTGHGSGQLIPHSAQVIQVDPDACE 307 (563)
T ss_dssp HCCCEEECGGGGGGGTTSCGGGEEEEG-G-GGGGTTTT-TCCCSEEEEESCCSSGGGTTTSCSSSCTTSEEEEECSCGGG
T ss_pred hCCcEEEcCcccCcCCCCCChhhcCCC-C-CCCHHHHh-hcCCCEEEEECCCCcccccccccccCCCCCeEEEEECCHHH
Confidence 999999999999999999 99999997 5 67777777 899999999999999988877776655 6789999999998
Q ss_pred ecCCCccc----cccHHHHHHHHHHHhccC----c-cch----hh-hhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCC
Q 007917 340 VGNGPSLG----WVFMADFLSALAKKLRKN----T-TAL----EN-YRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLS 405 (585)
Q Consensus 340 ~~~~~~~~----~~~~~~~l~~L~~~l~~~----~-~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 405 (585)
++ +.+.. ..|++.+|++|.+.+... . ..| .. +++........ ..... ++++..+++.|++.++
T Consensus 308 ~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~l~~~l~ 384 (563)
T 2uz1_A 308 LG-RLQGIALGIVADVGGTIEALAQATAQDAAWPDRGDWCAKVTDLAQERYASIAAK-SSSEH-ALHPFHASQVIAKHVD 384 (563)
T ss_dssp TT-SSSCCSEEECSCHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHH-CCCSS-SCCHHHHHHHHHTTCS
T ss_pred hC-CCCCCCeEEEcCHHHHHHHHHHhhhhcccccCcHHHHHHHHHHHHHHhHhhhhc-cccCC-CcCHHHHHHHHHHhCC
Confidence 87 33322 348999999999887542 1 112 11 22110000000 00112 6899999999999999
Q ss_pred CCCEEEecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhc--CCCcEEEEEcCchhH----hHHHHHHh
Q 007917 406 GDTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAA--KDKRVIACIGDGSFQ----EISTMIRC 478 (585)
Q Consensus 406 ~~~ii~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~--p~~~vv~v~GDGsf~----eL~ta~~~ 478 (585)
++++++.|+|++..|. .++..+++.+++.++++|+||+++|+|+|+++|. |+++||+++|||+|+ ||+|++++
T Consensus 385 ~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~g~g~~G~~l~~AiGaa~a~~~~~~~vv~i~GDG~~~~~~~~L~ta~~~ 464 (563)
T 2uz1_A 385 AGVTVVADGALTYLWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADLEAGRRTILVTGDGSVGYSIGEFDTLVRK 464 (563)
T ss_dssp TTEEEEECSSHHHHHHHHHHTTSCCSEEECCCTTCCTTTHHHHHHHHHHHHHHHTCEEEEEEEHHHHGGGTTHHHHHHHH
T ss_pred CCcEEEEcCchHHHHHHHhccccCCCeEECCCCCccccChHHHHHHHHHHhhCCCCeEEEEEccHHHhCCHHHHHHHHHh
Confidence 9999999999987654 4455666677999999999999999999999998 899999999999999 99999999
Q ss_pred CCCeEEEEEeCCceeeeeee----cC--C-CCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCe
Q 007917 479 GQRSIIFLINNGGYTIEVEI----HD--G-PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSL 551 (585)
Q Consensus 479 ~lpv~ivV~NN~~~~~~~~~----~~--~-~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp 551 (585)
++|+++||+||++|++.... +. . .++++.++||.++|++||+ ++++|++.+||+++|+++++ .+||
T Consensus 465 ~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~l~~al~~a~~--~~gp 537 (563)
T 2uz1_A 465 QLPLIVIIMNNQSWGATLHFQQLAVGPNRVTGTRLENGSYHGVAAAFGA-----DGYHVDSVESFSAALAQALA--HNRP 537 (563)
T ss_dssp TCCCEEEEEECSBCHHHHHHHHHHTCTTCCCSCBCCCCCHHHHHHHTTC-----EEEEECSHHHHHHHHHHHHH--SSSC
T ss_pred CCCeEEEEEeCCcchHHHHHHHHhcCCCcccCCcCCCCCHHHHHHHcCC-----eEEEeCCHHHHHHHHHHHHH--CCCC
Confidence 99999999999999984321 12 1 2345577999999999999 99999999999999999996 7899
Q ss_pred EEEEEEcCCCCChHH
Q 007917 552 CFIEVFVHKDDTSKE 566 (585)
Q Consensus 552 ~vIeV~v~~~~~~~~ 566 (585)
+||||.+++++.++.
T Consensus 538 ~liev~~~~~~~~p~ 552 (563)
T 2uz1_A 538 ACINVAVALDPIPPE 552 (563)
T ss_dssp EEEEEECCSCCCCHH
T ss_pred EEEEEEeccccCCch
Confidence 999999998777653
No 15
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=100.00 E-value=2.2e-88 Score=751.33 Aligned_cols=533 Identities=14% Similarity=0.117 Sum_probs=432.1
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (585)
.++++++|++.|+++||++|||+||++++||+++|.++++|++|.++||++|+|||+||||+||+ +||++|+|||++|+
T Consensus 30 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~~N~ 109 (604)
T 2x7j_A 30 ITHYIGSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDISVHVQIDERSAGFFALGLAKAKQRPVLLICTSGTAAANF 109 (604)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEECCCSTTHHHHHHHHHCTTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEECSSHHHHTT
T ss_pred hHHHHHHHHHHHHHcCCCEEEECcCcccHHHHHHHHhCCCceEEEecChHHHHHHHHHHHHhhCCCEEEEECChhHHHHH
Confidence 46899999999999999999999999999999999876789999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcch-------hHHHHHHHHH
Q 007917 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGD-------AHELIDTAIS 177 (585)
Q Consensus 105 ~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~-------~~~~l~~A~~ 177 (585)
++||++|+.+++|||+|||++|+...+++. .|..||.++|+++|||+.++.++++ +++.+++||+
T Consensus 110 ~~gia~A~~~~vPlv~ItG~~~~~~~g~~~--------~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~ 181 (604)
T 2x7j_A 110 YPAVVEAHYSRVPIIVLTADRPHELREVGA--------PQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAG 181 (604)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCGGGSSSCC--------TTCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCEEEEeCCCCHHHhCCCC--------CCcCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHH
Confidence 999999999999999999999998777652 3456889999999999999999998 9999999999
Q ss_pred Hhhhc-CCcEEEEecCCCCCCCCCCCCCCC--CCccCCCC-CCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHH
Q 007917 178 TALKE-SKPVYISISCNLPGIPHPTFARDP--VPFFLAPK-VSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQK 253 (585)
Q Consensus 178 ~a~~~-~gPV~i~iP~dv~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~ 253 (585)
.|.++ +|||||+||.|++..+.......+ ........ .....++++.+++++++|.+++||+|++|+|+ ++++.+
T Consensus 182 ~A~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~A~rPvIl~G~g~-~~~a~~ 260 (604)
T 2x7j_A 182 EAQKRPMGPVHVNVPLREPLMPDLSDEPFGRMRTGRHVSVKTGTQSVDRESLSDVAEMLAEAEKGMIVCGELH-SDADKE 260 (604)
T ss_dssp HHHSSSCCEEEEEEECCSCCCCCTTSCTTCCSSSSCSSEEECCEEECCTGGGHHHHHHHHHCSSEEEEECCCC-CHHHHH
T ss_pred HhhCCCCCcEEEEcccCccCCCcccccccccccccccccccccCccCChhhHHHHHHHHhhcCCeEEEECCCC-cHHHHH
Confidence 99985 799999999999653211110000 00000000 00011223568899999999999999999998 567889
Q ss_pred HHHHHHHHhCCCeEEccCCccCC-CCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEE
Q 007917 254 AFIELADATGYPIAIMPSGKGLV-PEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAII 332 (585)
Q Consensus 254 ~l~~lae~l~~Pv~~t~~gkg~~-~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~ 332 (585)
++++|||++++||++|+++++.+ +++||+++|.+.+..++..+++.++ +|+||+||+++.+..+..|....++.++||
T Consensus 261 ~l~~lae~~~~PV~~t~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~-~Dlvl~iG~~~~~~~~~~~~~~~~~~~~i~ 339 (604)
T 2x7j_A 261 NIIALSKALQYPILADPLSNLRNGVHDKSTVIDAYDSFLKDDELKRKLR-PDVVIRFGPMPVSKPVFLWLKDDPTIQQIV 339 (604)
T ss_dssp HHHHHHHHHTCCEEECGGGTTTBSSSCCTTEECCHHHHTTSHHHHHHHC-CSEEEEESSCCSCHHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHhcCceEEEcccccccccCCCCcceechHHHHhcCchhhhhcC-CCEEEEECCcCccHHHHHHHhhCCCCeEEE
Confidence 99999999999999999988766 8889999998766777777777776 899999999998776555543232458999
Q ss_pred EcCCceeecCCCccc----cccHHHHHHHHHHHhc-c-Cccch-hhhhhccC--CCCCCCCCCCCCCCCHHHHHHHHHhh
Q 007917 333 VQPHRVTVGNGPSLG----WVFMADFLSALAKKLR-K-NTTAL-ENYRRIYV--PPGIPVKRAQNEPLRVNVLFKHIQDM 403 (585)
Q Consensus 333 id~~~~~~~~~~~~~----~~~~~~~l~~L~~~l~-~-~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~ 403 (585)
||+|+.+++ +.+.. ..|++.+|++|.+.+. . ....| ..|.+... ..... ......++++.++++.|++.
T Consensus 340 id~d~~~~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~~ 417 (604)
T 2x7j_A 340 IDEDGGWRD-PTQASAHMIHCNASVFAEEIMAGLTAATRSSEWLEKWQFVNGRFREHLQ-TISSEDVSFEGNLYRILQHL 417 (604)
T ss_dssp ECTTCCCCC-TTSCCSEEECSCHHHHHHHHHHTSCSSCCCCHHHHHHHHHHHHHHHHHH-TSCCCCTTSHHHHHHHHHHH
T ss_pred ECCCCCccC-CCccceEEEEcCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHH-hhcccCCCCHHHHHHHHHHh
Confidence 999999886 33222 3489999999998774 2 11122 22211100 00000 01123479999999999999
Q ss_pred CCCCCEEEecCCcccccccc-ccccC-CCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHH
Q 007917 404 LSGDTAVIAETGDSWFNCQK-LRLPE-NCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIR 477 (585)
Q Consensus 404 l~~~~ii~~d~G~~~~~~~~-~~~~~-~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~ 477 (585)
+|++++++.|.|++.+|... +...+ +.+++.++++++||+++|+|+|+++| ++++||+++|||+|+ ||+|+++
T Consensus 418 lp~d~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~G~~~ig~~l~~AiGaala-~~~~vv~i~GDGsf~~~~~eL~ta~~ 496 (604)
T 2x7j_A 418 VPENSSLFVGNSMPIRDVDTFFEKQDRPFRIYSNRGANGIDGVVSSAMGVCEG-TKAPVTLVIGDLSFYHDLNGLLAAKK 496 (604)
T ss_dssp SCTTCEEEECTTHHHHHHHHHCCCBSCCCEEECCTTTCCSSSHHHHHHHHHHH-HTSCEEEEEEHHHHHHTGGGGHHHHH
T ss_pred CCCCCEEEEECCHHHHHHHHhcccCCCCceEEeCCCcCCcCcHHHHHHHHHhc-CCCcEEEEEccHHHHhHHHHHHHhhh
Confidence 99999999999988776543 33332 56799999999999999999999999 689999999999999 9999999
Q ss_pred hCCCeEEEEEeCCceeeeeeecC--------CCCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCC
Q 007917 478 CGQRSIIFLINNGGYTIEVEIHD--------GPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKD 549 (585)
Q Consensus 478 ~~lpv~ivV~NN~~~~~~~~~~~--------~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~ 549 (585)
+++|++|||+||++|+|...+.. ..+...+++||.++|++||+ ++++|++++||+++|+++++ .+
T Consensus 497 ~~lp~~ivv~NN~~~~i~~~~~~~q~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~ 569 (604)
T 2x7j_A 497 LGIPLTVILVNNDGGGIFSFLPQASEKTHFEDLFGTPTGLDFKHAAALYGG-----TYSCPASWDEFKTAYAPQAD--KP 569 (604)
T ss_dssp HCCCEEEEEEECSSCGGGGGSGGGSCHHHHHHHTTCCCCCCTHHHHHHTTC-----EEECCSSHHHHHHHCCCCCS--SC
T ss_pred cCCCeEEEEEeCCCCcccccCCCCccchhhHhhccCCCCCCHHHHHHHcCC-----eEEecCCHHHHHHHHHHHHh--CC
Confidence 99999999999999998432211 11233467899999999999 99999999999999999985 78
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHhhhhhc
Q 007917 550 SLCFIEVFVHKDDTSKELLEWGSRVSAAN 578 (585)
Q Consensus 550 gp~vIeV~v~~~~~~~~~~~~~~~~~~~~ 578 (585)
+|+||||.+++++.++.++++++.+++.+
T Consensus 570 gp~liev~~~~~~~~~~~~~~~~~~~~~~ 598 (604)
T 2x7j_A 570 GLHLIEIKTDRQSRVQLHRDMLNEAVREV 598 (604)
T ss_dssp CEEEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887654
No 16
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=100.00 E-value=1.8e-86 Score=733.61 Aligned_cols=509 Identities=17% Similarity=0.199 Sum_probs=424.5
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-CCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-PELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~-~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (585)
.|+++++|++.|+++||++|||+||+++++|+++|.++ ++|++|.++||++|+|||+||||+||+ +||++|+|||++|
T Consensus 3 ~~~~a~~lv~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N 82 (590)
T 1v5e_A 3 KINIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASH 82 (590)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHTTSSSTTCCCEEEECSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHT
T ss_pred CccHHHHHHHHHHHcCCCEEEEecCCchHHHHHHHHhcCCCCeEEeeCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHH
Confidence 47899999999999999999999999999999999875 689999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-
Q 007917 104 VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE- 182 (585)
Q Consensus 104 ~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~- 182 (585)
+++||++|+.+++|||+|||++|....+++ .+ |..||.++|+++|||+.++.+++++++.+++||+.|.++
T Consensus 83 ~~~gl~~A~~~~vPll~Itg~~p~~~~g~~-----~~---Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~ 154 (590)
T 1v5e_A 83 LINGLYDAAMDNIPVVAILGSRPQRELNMD-----AF---QELNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKR 154 (590)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCGGGTTTT-----CT---TCCCCHHHHHTTCSEEEECCSGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcccCCCC-----cc---cccCHHHHHHhhccEEEEeCCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999877664 22 345789999999999999999999999999999999997
Q ss_pred CCcEEEEecCCCCCCCCCCCCC--C--CCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHH
Q 007917 183 SKPVYISISCNLPGIPHPTFAR--D--PVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIEL 258 (585)
Q Consensus 183 ~gPV~i~iP~dv~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~l 258 (585)
|||||| ||.|++..+.+.... . ..+. ..+. .+..+.+++++++|.+++||+|++|+|+ + ++.+++.+|
T Consensus 155 ~GPV~l-iP~dv~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~i~~~~~~l~~a~rpvil~G~g~-~-~a~~~l~~l 226 (590)
T 1v5e_A 155 GVAVLE-VPGDFAKVEIDNDQWYSSANSLRK-YAPI----APAAQDIDAAVELLNNSKRPVIYAGIGT-M-GHGPAVQEL 226 (590)
T ss_dssp SEEEEE-EETTGGGCEEEGGGCCCCGGGCCC-CCCC----CCCHHHHHHHHHHHHHCSSEEEEECGGG-T-TCHHHHHHH
T ss_pred CceEEE-EccchhhcccCccccccccccccc-CCCC----CCCHHHHHHHHHHHHhCCCeEEEEcCch-h-HHHHHHHHH
Confidence 599999 999997632111000 0 0110 0110 1234678999999999999999999999 7 899999999
Q ss_pred HHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCccc-ccccccCCCcceEEEcCCc
Q 007917 259 ADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSS-VGYSLLIKKEKAIIVQPHR 337 (585)
Q Consensus 259 ae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~-~~~~~~~~~~~~i~id~~~ 337 (585)
||++++||++|++|||.||++||+++|. .|..+++.++++++++|+||+||+++++... ..+ + ++.++||||+|+
T Consensus 227 ae~~~~Pv~~t~~g~g~~~~~~p~~~G~-~g~~g~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~--~-~~~~~i~id~d~ 302 (590)
T 1v5e_A 227 ARKIKAPVITTGKNFETFEWDFEALTGS-TYRVGWKPANETILEADTVLFAGSNFPFSEVEGTF--R-NVDNFIQIDIDP 302 (590)
T ss_dssp HHHHTCCEEECTTCGGGSCTTCTTEEEE-SSSSSCHHHHHHHHHCSEEEEESCCCTTTTTTTTT--T-TCSEEEEEESCG
T ss_pred HHHHCCCEEEccccCcCCCCCChhhCcc-CcccCCHHHHHHHHhCCEEEEECCCCcchhccccC--C-CCCeEEEEeCCH
Confidence 9999999999999999999999999999 4888999999999999999999999987652 111 2 466899999999
Q ss_pred eeecCCCccc----cccHHHHHHHHHHHhccCc-cch-hhhhhccCCC-CCCCC--CCCCCCCCHHHHHHHHHhhCCCCC
Q 007917 338 VTVGNGPSLG----WVFMADFLSALAKKLRKNT-TAL-ENYRRIYVPP-GIPVK--RAQNEPLRVNVLFKHIQDMLSGDT 408 (585)
Q Consensus 338 ~~~~~~~~~~----~~~~~~~l~~L~~~l~~~~-~~~-~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~L~~~l~~~~ 408 (585)
.+++ +.+.. ..|++.+|++|.+.+.... ..| ..+.+..... ..... .....++++.++++.|++.+|+++
T Consensus 303 ~~~~-~~~~~~~~i~gd~~~~l~~L~~~l~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 381 (590)
T 1v5e_A 303 AMLG-KRHHADVAILGDAALAIDEILNKVDAVEESAWWTANLKNIANWREYINMLETKEEGDLQFYQVYNAINNHADEDA 381 (590)
T ss_dssp GGTT-SSSCCSEEEESCHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHHHTCCSSBCCHHHHHHHHHHHSCTTC
T ss_pred HHHC-CCcCCCeEEEcCHHHHHHHHHHhhccCCcHHHHHHHHHHHHHhHhhhhhcccCCCCCcCHHHHHHHHHhhCCCCC
Confidence 9887 33322 2488999999998875422 112 1111100000 00000 012346899999999999999999
Q ss_pred EEEecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeE
Q 007917 409 AVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSI 483 (585)
Q Consensus 409 ii~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~ 483 (585)
+++.|+|++.+|. .++..+++.++++++++|+||+++|+|+|+++|.|+++||+++|||+|+ ||+|++++++|++
T Consensus 382 ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~~~~L~ta~~~~l~~~ 461 (590)
T 1v5e_A 382 IYSIDVGNSTQTSIRHLHMTPKNMWRTSPLFATMGIAIPGGLGAKNTYPDRQVWNIIGDGAFSMTYPDVVTNVRYNMPVI 461 (590)
T ss_dssp EEEECSSHHHHGGGGTCCCCTTSEEECCCSSCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHHGGGHHHHHHTTCCCE
T ss_pred EEEECCchHHHHHHHhcccCCCCeEEcCCCCCcccChHHHHHHHHHhCCCCeEEEEEechHHhchHHHHHHHHHhCCCCE
Confidence 9999999998774 5566777778999999999999999999999999999999999999998 9999999999999
Q ss_pred EEEEeCCceeeeeeecCCC-C----CCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCC---CCeEEEE
Q 007917 484 IFLINNGGYTIEVEIHDGP-Y----NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQK---DSLCFIE 555 (585)
Q Consensus 484 ivV~NN~~~~~~~~~~~~~-~----~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~---~gp~vIe 555 (585)
+||+||++|++.+..+... | +++.++||.++|++||+ ++++|++++||+++|+++++ . +||+|||
T Consensus 462 ivv~NN~~~~~~~~~q~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~~~~gp~lie 534 (590)
T 1v5e_A 462 NVVFSNTEYAFIKNKYEDTNKNLFGVDFTDVDYAKIAEAQGA-----KGFTVSRIEDMDRVMAEAVA--ANKAGHTVVID 534 (590)
T ss_dssp EEEEECSSCTTGGGTTSSSCCSCCCCCCCCCCHHHHHHHTTS-----EEEEECBHHHHHHHHHHHHH--HHHTTCCEEEE
T ss_pred EEEEECCchHHHHHHHHHhcCCCccccCCCCCHHHHHHHcCC-----EEEEECCHHHHHHHHHHHHH--hcCCCCCEEEE
Confidence 9999999999843222111 2 23567999999999999 99999999999999999986 4 8999999
Q ss_pred EEcCCCC
Q 007917 556 VFVHKDD 562 (585)
Q Consensus 556 V~v~~~~ 562 (585)
|.+++++
T Consensus 535 v~~~~~~ 541 (590)
T 1v5e_A 535 CKITQDR 541 (590)
T ss_dssp EECCSCC
T ss_pred EEecccc
Confidence 9999998
No 17
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=100.00 E-value=8e-87 Score=734.92 Aligned_cols=513 Identities=20% Similarity=0.234 Sum_probs=425.5
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCC-hHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDF-NLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLS 103 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~-~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n 103 (585)
.++++++|++.|+++||++|||+||++ +++|+++|. + |++|.++||++|+|||+||||+||+ +||++|+|||++|
T Consensus 11 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~~l~~al~--~-i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N 87 (573)
T 2iht_A 11 KPTAAHALLSRLRDHGVGKVFGVVGREAASILFDEVE--G-IDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTN 87 (573)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCCGGGGTCCSCSST--T-CEEEECSSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHH
T ss_pred CccHHHHHHHHHHHCCCCEEEEecCCcchhHHHHHHc--C-CeEEeeCCHHHHHHHHHHHHHHHCCCEEEEEccCchHHH
Confidence 379999999999999999999999999 999999997 4 9999999999999999999999999 9999999999999
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCCccCCC-ccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc
Q 007917 104 VLNAIAGAYSENLPVICIVGGPNSNDYGT-NRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182 (585)
Q Consensus 104 ~~~gl~~A~~~~~Pll~I~g~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~ 182 (585)
+++||++|+.+++|||+|||++|....++ + . +|..||.++|+++|||+.++.+++++++.+++||+.|.++
T Consensus 88 ~~~~v~~A~~~~~Pll~itg~~~~~~~~~~~-----~---~Q~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~ 159 (573)
T 2iht_A 88 LSTGIATSVLDRSPVIALAAQSESHDIFPND-----T---HQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTE 159 (573)
T ss_dssp HHHHHHHHHHHTCCEEEEEEESCGGGCCTTT-----S---TTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHTBS
T ss_pred HHHHHHHHHhhCCCEEEEcccCcccccCCcC-----c---cccCCHHHHHHhHhhEEEEcCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999987766 4 1 3456899999999999999999999999999999999987
Q ss_pred -CCcEEEEecCCCCCCCCC----CCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHH
Q 007917 183 -SKPVYISISCNLPGIPHP----TFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIE 257 (585)
Q Consensus 183 -~gPV~i~iP~dv~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~ 257 (585)
||||||+||.|++..+.. .......+. ..+......+.++.+++++++|.++|||+|++|.|+.++++.+++.+
T Consensus 160 ~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~ 238 (573)
T 2iht_A 160 PVGPSFISLPVDLLGSSEGIDTTVPNPPANTP-AKPVGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRA 238 (573)
T ss_dssp SCCCEEEEEEHHHHTCCTTCC---CCCCCCCC-SSCBEEECTTHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHH
T ss_pred CCceEEEEecchHhhhhhcccccCCccccccC-CCCccccCCCCHHHHHHHHHHHHcCCCeEEEECCCccccCHHHHHHH
Confidence 599999999999753200 111000010 11110000135667999999999999999999999998889999999
Q ss_pred HHHHhCCCeEEccCCccCCCCCCCCceeee----cCCCCCHHHHHHhhhCCEEEEeCCc-cCCcccccccccCCCcceEE
Q 007917 258 LADATGYPIAIMPSGKGLVPEHHPHFIGTY----WGAVSSSFCGEIVESADAYVFVGPI-FNDYSSVGYSLLIKKEKAII 332 (585)
Q Consensus 258 lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~----~g~~~~~~~~~~l~~aD~vl~lG~~-~~~~~~~~~~~~~~~~~~i~ 332 (585)
|||++++||++|++|||.||++||+++|.+ +|..+++.++++++++|+||.||++ +.++.+..|. ..++.++||
T Consensus 239 lae~~~~Pv~~t~~~~g~~~~~hp~~~G~~~~~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~-~~~~~~~i~ 317 (573)
T 2iht_A 239 LAERLNIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQTMFAPVDLVLTVGYDYAEDLRPSMWQ-KGIEKKTVR 317 (573)
T ss_dssp HHHHHTCCEEECSTTTTSSCTTCTTEEEECCTTHHHHHTSCHHHHHHTTCCEEEEETCCGGGCCCHHHHC-CSSCCEEEE
T ss_pred HHHHHCCeEEEecccCccCCCCCcCccCccccccCCCCCCHHHHHHHhhCCEEEEECCCccccccccccC-CCCCCeEEE
Confidence 999999999999999999999999999985 3666777888999999999999999 9887776665 224568999
Q ss_pred EcCCceeecCCCccc----cccHHHHHHHHHHHhccCc-cchhhh---hhccCCCCCCCCCCCCCCCCHHHHHHHHHhhC
Q 007917 333 VQPHRVTVGNGPSLG----WVFMADFLSALAKKLRKNT-TALENY---RRIYVPPGIPVKRAQNEPLRVNVLFKHIQDML 404 (585)
Q Consensus 333 id~~~~~~~~~~~~~----~~~~~~~l~~L~~~l~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l 404 (585)
||.|+.+++ +.+.. ..|++.+|++|.+.+.... ..|..+ ++..... .........++++.++++.|++.+
T Consensus 318 id~d~~~~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l 395 (573)
T 2iht_A 318 ISPTVNPIP-RVYRPDVDVVTDVLAFVEHFETATASFGAKQRHDIEPLRARIAEF-LADPETYEDGMRVHQVIDSMNTVM 395 (573)
T ss_dssp EESSCCSCT-TTCCCSEEEESCHHHHHHHHHHHTTTCCCCCCCCCHHHHHHHHHH-HTCCCCCSSSBCHHHHHHHHHHHH
T ss_pred EeCCHHHhC-CCcCCCeeEeCCHHHHHHHHHHhccccCchhHHHHHHHHHHhhhh-hhccccCcCCcCHHHHHHHHHHhc
Confidence 999999887 33322 2489999999988775421 112211 1110000 000112234699999999999999
Q ss_pred CC-----CCEEEecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHH
Q 007917 405 SG-----DTAVIAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EIST 474 (585)
Q Consensus 405 ~~-----~~ii~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~t 474 (585)
++ +++++.|+|++.+|. .++..+++.+++.++++|+||+++|+|+|+++|.|+++||+++|||+|+ ||+|
T Consensus 396 ~~~~~~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaa~a~~~~~vv~i~GDG~~~~~~~~L~~ 475 (573)
T 2iht_A 396 EEAAEPGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDGGFHSNSSDLET 475 (573)
T ss_dssp HHHSCTTCCEEEECSSHHHHHHHHHCCCCSTTSEECCSSSCCTTCHHHHHHHHHHHSTTSCEEEEEEHHHHHHTGGGHHH
T ss_pred ccccCCCCcEEEEcCcHhHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEccHHHHhHHHHHHH
Confidence 99 999999999998664 3455666667999999999999999999999999999999999999999 9999
Q ss_pred HHHhCCCeEEEEEeCCceeeeeee----cCC-CC--CCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcC
Q 007917 475 MIRCGQRSIIFLINNGGYTIEVEI----HDG-PY--NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQ 547 (585)
Q Consensus 475 a~~~~lpv~ivV~NN~~~~~~~~~----~~~-~~--~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~ 547 (585)
++++++|+++||+||++|++.... +.. .. +.+..+||.++|++||+ ++++|++.+||+++|+++++
T Consensus 476 a~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~l~~al~~a~~-- 548 (573)
T 2iht_A 476 IARLNLPIVTVVVNNDTNGLIELYQNIGHHRSHDPAVKFGGVDFVALAEANGV-----DATRATNREELLAALRKGAE-- 548 (573)
T ss_dssp HHHHTCCCEEEEEECSBCHHHHHHHHHHHSSCCGGGTBCCCCCHHHHHHHTTC-----EEEECCSHHHHHHHHHHHHT--
T ss_pred HHHhCCCeEEEEEECCcchhhHHHHHHhcCCCcCccccCCCCCHHHHHHHcCC-----eEEEeCCHHHHHHHHHHHHh--
Confidence 999999999999999999983321 122 23 45567899999999999 99999999999999999986
Q ss_pred CCCeEEEEEEcCC
Q 007917 548 KDSLCFIEVFVHK 560 (585)
Q Consensus 548 ~~gp~vIeV~v~~ 560 (585)
.+||+||||.+++
T Consensus 549 ~~gp~liev~~~~ 561 (573)
T 2iht_A 549 LGRPFLIEVPVNY 561 (573)
T ss_dssp SSSCEEEEEEBCC
T ss_pred CCCCEEEEEECCC
Confidence 7899999999998
No 18
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=100.00 E-value=6e-86 Score=733.94 Aligned_cols=518 Identities=17% Similarity=0.208 Sum_probs=423.8
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhc-Cc-cEEEEeCCcchHHH
Q 007917 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSR-GV-GACVVTFTVGGLSV 104 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~t-g~-~v~~~t~GpG~~n~ 104 (585)
++++++|++.|+++||++|||+||+++++|+++|.+.++|++|.++||++|+|||+||||+| |+ +||++|+|||++|+
T Consensus 27 ~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N~ 106 (616)
T 2pan_A 27 MRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDM 106 (616)
T ss_dssp EEHHHHHHHHHHHTTCCEEEECCCGGGHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHHHSTTCCEEEEECSTHHHHTS
T ss_pred CcHHHHHHHHHHHCCCCEEEECCCCccHHHHHHHHhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCceEEEeCCCchHHHH
Confidence 69999999999999999999999999999999998766899999999999999999999999 78 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-C
Q 007917 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (585)
Q Consensus 105 ~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (585)
++||++|+.+++|||+|||++|....+++ ..|..||.++|+++|||+.++.+++++++++++|++.|.++ |
T Consensus 107 ~~~l~~A~~~~vPlvvItg~~p~~~~~~~--------~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~r~ 178 (616)
T 2pan_A 107 ITALYSASADSIPILCITGQAPRARLHKE--------DFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRP 178 (616)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTTT--------CTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHhcCCCEEEEecCCcccccCcc--------cccccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999866554 13456889999999999999999999999999999999986 6
Q ss_pred CcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhC
Q 007917 184 KPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG 263 (585)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~ 263 (585)
|||||+||.|++..+.+........ .+.... ...++.+++++++|.+++||+|++|.|+.++++.+++.+|||+++
T Consensus 179 GPV~l~iP~d~~~~~~~~~~~~~~~--~~~~~~--~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~ 254 (616)
T 2pan_A 179 GPVLVDLPFDVQVAEIEFDPDMYEP--LPVYKP--AASRMQIEKAVEMLIQAERPVIVAGGGVINADAAALLQQFAELTS 254 (616)
T ss_dssp CCEEEEEEHHHHHSEEECCGGGCCC--CCCCCC--CCCHHHHHHHHHHHHTCSSEEEEECHHHHHTTCHHHHHHHHHHHT
T ss_pred ceEEEEcchhhhhcccccccccccc--cccCCC--CCCHHHHHHHHHHHHcCCCeEEEECCCcCcccHHHHHHHHHHHhC
Confidence 9999999999965311111000000 000001 112467899999999999999999999998889999999999999
Q ss_pred CCeEEccCCccCCCCCCCCceeeecCCCCCH-HHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeecC
Q 007917 264 YPIAIMPSGKGLVPEHHPHFIGTYWGAVSSS-FCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGN 342 (585)
Q Consensus 264 ~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~-~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~~ 342 (585)
+||++|++|||.||++||+++|.+ |..++. .++++++++|+||+||+++++..+..+..+.++.++||||+|+.+++
T Consensus 255 ~PV~~t~~~~g~~~~~hp~~~G~~-g~~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~- 332 (616)
T 2pan_A 255 VPVIPTLMGWGCIPDDHELMAGMV-GLQTAHRYGNATLLASDMVFGIGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIG- 332 (616)
T ss_dssp CCEEECTTTTTSSCTTSTTBCCCC-SSSSCCHHHHHHHHHCSEEEEESCCCCHHHHSSHHHHHTTCEEEEEESCGGGTT-
T ss_pred CCEEEccccCccCCCCCccccCCc-cccCCHHHHHHHHHhCCEEEEECCCCcccccCcccccCCCCeEEEEeCCHHHhC-
Confidence 999999999999999999999997 555655 78899999999999999998766655555556678999999998887
Q ss_pred CCccc----cccHHHHHHHHHHHhcc------C--ccchhhhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhhCCCCCEE
Q 007917 343 GPSLG----WVFMADFLSALAKKLRK------N--TTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAV 410 (585)
Q Consensus 343 ~~~~~----~~~~~~~l~~L~~~l~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ii 410 (585)
+.+.. ..|++.+|++|.+.+.. . ..++....+...............++++..+++.|++.+++++++
T Consensus 333 ~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~iv 412 (616)
T 2pan_A 333 RVLCPDLGIVSDAKAALTLLVEVAQEMQKAGRLPCRKEWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCY 412 (616)
T ss_dssp SSSCCSSCEECCHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHTTSEECCCCCCSSBCHHHHHHHHHHHSCTTEEE
T ss_pred CCCCCCeEEEcCHHHHHHHHHHHhhhcccccccccHHHHHHHHHHHHhhhhhccccCCCCcCHHHHHHHHHHhCCCCcEE
Confidence 33322 24889999999876542 1 111221111110000000111234699999999999999999999
Q ss_pred EecCCcccccc-ccccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCeEEE
Q 007917 411 IAETGDSWFNC-QKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIF 485 (585)
Q Consensus 411 ~~d~G~~~~~~-~~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv~iv 485 (585)
+.|+|++..|. .++..+++.+|+.++++|+||+++|+|+|+++|.|+++||+++|||+|+ ||+|++++++|+++|
T Consensus 413 v~d~G~~~~~~~~~~~~~~~~~~~~~g~~G~~G~~l~~AiGaala~~~~~vv~i~GDGs~~~~~~~L~ta~~~~l~~~iv 492 (616)
T 2pan_A 413 VTTIGLSQIAAAQMLHVFKDRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQFLIEELAVGAQFNIPYIHV 492 (616)
T ss_dssp EECSSHHHHHHHHHCCCCSTTSEEECTTTCCTTCHHHHHHHHHHHCTTCEEEEEEEHHHHHHTGGGHHHHHHTTCCCEEE
T ss_pred EEcCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHhCCCCcEEEEEcchhhhCCHHHHHHHHHhCCCeEEE
Confidence 99999987654 4556666667999999999999999999999999999999999999998 999999999999999
Q ss_pred EEeCCceeeeee----ecCC-----CCCC--C-----CCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--cC
Q 007917 486 LINNGGYTIEVE----IHDG-----PYNV--I-----KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQ 547 (585)
Q Consensus 486 V~NN~~~~~~~~----~~~~-----~~~~--~-----~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~~ 547 (585)
|+||++|++... .+.. .+.. + +.+||.++|++||+ ++++|++++||+++|+++++ .+
T Consensus 493 v~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~~~~~ 567 (616)
T 2pan_A 493 LVNNAYLGLIRQSQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGC-----KAIRVFKPEDIAPAFEQAKALMAQ 567 (616)
T ss_dssp EEECSBCHHHHHHGGGGTCCCSCBCCCCCTTCGGGTTCCCCHHHHHHHTTC-----EEEEECSGGGHHHHHHHHHHHHHH
T ss_pred EEECCcchHHHHHHHHhcCCccccccccccccccCCCCCCCHHHHHHHcCC-----eEEEECCHHHHHHHHHHHHhhccc
Confidence 999999998321 1111 2222 2 24899999999999 99999999999999999974 11
Q ss_pred CCCeEEEEEEcCCCCC
Q 007917 548 KDSLCFIEVFVHKDDT 563 (585)
Q Consensus 548 ~~gp~vIeV~v~~~~~ 563 (585)
.+||+||||.+++.+.
T Consensus 568 ~~gp~lIev~~~~~~~ 583 (616)
T 2pan_A 568 YRVPVVVEVILERVTN 583 (616)
T ss_dssp HCSCEEEEEEBCSCCC
T ss_pred CCCcEEEEEEeccccc
Confidence 4799999999998774
No 19
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=100.00 E-value=2.1e-86 Score=731.84 Aligned_cols=522 Identities=15% Similarity=0.150 Sum_probs=395.8
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (585)
.++++++|++.|+++||++|||+||+++++|+++|.+.++|++|.++||++|+|||+||||+||+ +||++|+|||++|+
T Consensus 10 ~~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~N~ 89 (578)
T 3lq1_A 10 LTDYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAKASKRPVVLLCTSGTAAANY 89 (578)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHCCCEEEEECSSHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCceEEEecCcHHHHHHHHHHHHhhCCCEEEEECCchhhhhh
Confidence 47899999999999999999999999999999999877789999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHH-------HHHHHHH
Q 007917 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHE-------LIDTAIS 177 (585)
Q Consensus 105 ~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~-------~l~~A~~ 177 (585)
++||++|+.+++|||+||||+|....+++. .|..||.++|+++|||+.++.+++++++ .+++||+
T Consensus 90 ~~gia~A~~d~vPll~itG~~p~~~~g~~~--------~Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~ 161 (578)
T 3lq1_A 90 FPAVAEANLSQIPLIVLTADRPHELRNVGA--------PQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVD 161 (578)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCGGGTTSSC--------TTCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCeEEEeCCCCHHhhcCCC--------CCCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHH
Confidence 999999999999999999999998776652 2345889999999999999999998775 8999999
Q ss_pred Hhhhc-CCcEEEEecCCCCCCCCCCCCCCCC----Cc--cCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhc
Q 007917 178 TALKE-SKPVYISISCNLPGIPHPTFARDPV----PF--FLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAK 250 (585)
Q Consensus 178 ~a~~~-~gPV~i~iP~dv~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~ 250 (585)
.|.++ ||||||+||.|++.. +....... +. ..........++++.+++++++|.+ |||+|++|+|+.+ +
T Consensus 162 ~A~~gr~GPV~l~iP~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~-~rPvIl~G~g~~~-~ 237 (578)
T 3lq1_A 162 IAMKTPRGPVHLNFPLREPLV--PILEPSPFTATGKKHHHVHIYYTHEVLDDSSIQKMVTECTG-KKGVFVVGPIDKK-E 237 (578)
T ss_dssp HHHSSSCCCEEEEEECCSCCC--CCCSSCCC------------CCEEEEECHHHHHHHHHHTTT-SCEEEEECSCCCT-T
T ss_pred HhhCCCCCcEEEECccCCCCC--CCcccchhcccCccccccccccCccCCChHHHHHHHHHhcc-CCeEEEECCCCCh-H
Confidence 99996 799999999998653 11110000 00 0000000112345679999999999 9999999999986 4
Q ss_pred hHHHHHHHHHHhCCCeEEccC-CccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcc
Q 007917 251 AQKAFIELADATGYPIAIMPS-GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEK 329 (585)
Q Consensus 251 a~~~l~~lae~l~~Pv~~t~~-gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~ 329 (585)
+.+++.+|||++++||++|++ +++.+|++||+++|.+.+..+.. ....+.+||+||.||+++.+..+..|....++.+
T Consensus 238 ~~~~l~~lae~~~~PV~~t~~~~~~~~~~~hp~~~g~~~~~~~~~-~~~~~~~aDlvl~~G~~~~~~~~~~~~~~~~~~~ 316 (578)
T 3lq1_A 238 LEQPMVDLAKKLGWPILADPLSGLRSYGALDEVVIDQYDAFLKEA-EIIDKLTPEVVIRFGSMPVSKPLKNWLEQLSDIR 316 (578)
T ss_dssp CHHHHHHHHHHHTCCEEECGGGSTTSBSSCCSSEECCHHHHTTSH-HHHHHTCCSEEEEESSCCSCHHHHHHHHHCCSSE
T ss_pred HHHHHHHHHHhcCcEEEEecCCCCCCCCCCCccccccHHHHhcCc-cccccCCCCEEEEeCCcccchhHHHHHhcCCCCE
Confidence 679999999999999999965 69999999999999875444443 4456889999999999876655444543335678
Q ss_pred eEEEcCCceeecCCCccc----cccHHHHHHHHHHHhccCc-c--chhhhhhccC--CC-CCCCCCCCCCCCCHHHHHHH
Q 007917 330 AIIVQPHRVTVGNGPSLG----WVFMADFLSALAKKLRKNT-T--ALENYRRIYV--PP-GIPVKRAQNEPLRVNVLFKH 399 (585)
Q Consensus 330 ~i~id~~~~~~~~~~~~~----~~~~~~~l~~L~~~l~~~~-~--~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~ 399 (585)
+|+||+|+.+++ ..+.. ..|++.+|++|.+.+.... . +...|++... .. ... ......++++.++++.
T Consensus 317 ~i~id~d~~~~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 394 (578)
T 3lq1_A 317 FYVVDPGAAWKD-PIKAVTDMIHCDERFLLDIMQQNMPDDAKDAAWLNGWTSYNKVAREIVLA-EMANTTILEEGKIVAE 394 (578)
T ss_dssp EEEECTTCCCCC-TTCCCSEEECSCHHHHHHHHHHHSCSTTCCHHHHHHHHHHHHHHHHHHHH-HSCC----CTTHHHHH
T ss_pred EEEECCCCCcCC-CCcCceEEEEeCHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHHhHHHHH-hhhcCCCCCHHHHHHH
Confidence 999999998886 33322 2489999999998776432 1 2222221100 00 000 0122357899999999
Q ss_pred HHhhCCCCCEEEecCCcccccccc-cc-ccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHH
Q 007917 400 IQDMLSGDTAVIAETGDSWFNCQK-LR-LPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EIS 473 (585)
Q Consensus 400 L~~~l~~~~ii~~d~G~~~~~~~~-~~-~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ 473 (585)
|++.+|++++++.|.|+..++... +. .+++.+++.+.++++||+++|+|+|+++ ++++|||++|||||+ ||+
T Consensus 395 l~~~l~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~~g~l~~AiGaa~--~~~~vv~i~GDGsf~~~~~eL~ 472 (578)
T 3lq1_A 395 LRRLLPDKAGLFIGNSMPIRDVDTYFSQIDKKIKMLANRGANGIDGVVSSALGASV--VFQPMFLLIGDLSFYHDMNGLL 472 (578)
T ss_dssp HHHHSCSEEEEEECSSHHHHHHHHHCCCCSSEEEEECCCSSCCSSSHHHHHHHHTT--TSSSEEEEEEHHHHHHTGGGGH
T ss_pred HHHhCCCCCeEEEeCccHHHHHHHhhcccCCCceEEeCCCccccccHHHHHHHHhc--CCCCEEEEEchHHHHhhHHHHH
Confidence 999999999999998877665433 32 3455567778888888889999999975 589999999999999 999
Q ss_pred HHHHhCCCeEEEEEeCCceeeeeee---c-CCC----CCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh
Q 007917 474 TMIRCGQRSIIFLINNGGYTIEVEI---H-DGP----YNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG 545 (585)
Q Consensus 474 ta~~~~lpv~ivV~NN~~~~~~~~~---~-~~~----~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~ 545 (585)
|++++++|+++||+||++|++.+.+ . ... +....++||.++|++||+ ++++|++.+||+++|+++++
T Consensus 473 ta~~~~l~~~ivv~NN~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~ 547 (578)
T 3lq1_A 473 MAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESLFGTSTELDFRFAAAFYDA-----DYHEAKSVDELEEAIDKASY 547 (578)
T ss_dssp HHHHTTCCEEEEEECCC-------------------------CCCTHHHHHHTTC-----EEEECCSHHHHHHHHHHHTT
T ss_pred hhccCCCCeEEEEEECCcCccccccccccccchhhhhccCCCCCCHHHHHHHcCC-----ceEecCCHHHHHHHHHHHHh
Confidence 9999999999999999999995422 1 111 223357899999999999 99999999999999999986
Q ss_pred cCCCCeEEEEEEcCCCCChHHHHHHH
Q 007917 546 EQKDSLCFIEVFVHKDDTSKELLEWG 571 (585)
Q Consensus 546 ~~~~gp~vIeV~v~~~~~~~~~~~~~ 571 (585)
.+||+||||.+++++...+++.+.
T Consensus 548 --~~gp~liev~~~~~~~~~~~~~~~ 571 (578)
T 3lq1_A 548 --HKGLDIIEVKTNRHENKANHQALE 571 (578)
T ss_dssp --SSSEEEEEEC--------------
T ss_pred --CCCCEEEEEECCccccHHHHHhhh
Confidence 789999999999999888776653
No 20
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=100.00 E-value=9.3e-86 Score=726.14 Aligned_cols=524 Identities=19% Similarity=0.201 Sum_probs=413.2
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (585)
.++++++|++.|+++||++|||+||+++++|+++|.+. +|++|.++||++|+|||+||||+||+ +||++|+|||++|+
T Consensus 9 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~~-~i~~i~~~~E~~Aa~~A~GyAr~tg~pgv~~~TsGpG~~N~ 87 (568)
T 2c31_A 9 LTDGFHVLIDALKMNDIDTMYGVVGIPITNLARMWQDD-GQRFYSFRHEQHAGYAASIAGYIEGKPGVCLTVSAPGFLNG 87 (568)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHHT-TCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHH
T ss_pred cccHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHhC-CCcEEEeCcHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHH
Confidence 48999999999999999999999999999999999764 79999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-C
Q 007917 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (585)
Q Consensus 105 ~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (585)
++||++|+.+++|||+|||++++...+.+ .+..|..||.++|+++|||+.++.+++++++.+++||+.|.++ +
T Consensus 88 ~~~i~~A~~~~vPll~itg~~~~~~~~~~------~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~ 161 (568)
T 2c31_A 88 VTSLAHATTNCFPMILLSGSSEREIVDLQ------QGDYEEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRP 161 (568)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCHHHHHTT------CCCTTCCCHHHHSGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHhcCCCEEEEccCCCccccCCC------CCcccccCHHHHHHhhhheeeecCCHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999998865521 0123446899999999999999999999999999999999985 7
Q ss_pred CcEEEEecCCCCCCCCCCCC--CCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHH
Q 007917 184 KPVYISISCNLPGIPHPTFA--RDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (585)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~ 261 (585)
|||||+||.|++..+.+... ....+....+.. ..++++.+++++++|.+++||+|++|.|+.++++.+++.+|||+
T Consensus 162 GPV~l~iP~dv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~ 239 (568)
T 2c31_A 162 GGVYVDLPAKLFGQTISVEEANKLLFKPIDPAPA--QIPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEE 239 (568)
T ss_dssp CEEEEEEETHHHHCEEEHHHHHHHCCCCSCSSCC--CCCCHHHHHHHHHHHHTCSSEEEEECHHHHHHTCHHHHHHHHHH
T ss_pred ceEEEeCCHHHhhccccccccccccccccCCCCC--CCCCHHHHHHHHHHHHhCCCCEEEECcccccccHHHHHHHHHHH
Confidence 99999999998642111000 000000000000 11235678999999999999999999999988899999999999
Q ss_pred hCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccc-cccC-CCcceEEEcCCcee
Q 007917 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGY-SLLI-KKEKAIIVQPHRVT 339 (585)
Q Consensus 262 l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~-~~~~-~~~~~i~id~~~~~ 339 (585)
+++||++|++|||.||++||+++|.. .+++++++|+||+||+++++..+.++ ..+. ++.++||||+|+.+
T Consensus 240 ~~~Pv~~t~~~~g~~~~~~p~~~G~~--------~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~ii~id~d~~~ 311 (568)
T 2c31_A 240 TGIPFLPMGMAKGLLPDNHPQSAAAT--------RAFALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANE 311 (568)
T ss_dssp HTCCEEECGGGTTSSCTTCTTBCGGG--------HHHHHHHCSEEEEESCCCSGGGGGGCSGGGTTSCCEEEEEESCGGG
T ss_pred hCCCEEecccccccCCCCChhhcchH--------HHhhhccCCEEEEECCCCccccccCcccccCCCCCeEEEEeCCHHH
Confidence 99999999999999999999999852 46788999999999999987665433 2343 56789999999988
Q ss_pred ecCCCccc----cccHHHHHHHHHHHhccCcc---ch-hhhhhcc---CCCCCCCCCCC--CCCCCHHHHHHHHHhhC--
Q 007917 340 VGNGPSLG----WVFMADFLSALAKKLRKNTT---AL-ENYRRIY---VPPGIPVKRAQ--NEPLRVNVLFKHIQDML-- 404 (585)
Q Consensus 340 ~~~~~~~~----~~~~~~~l~~L~~~l~~~~~---~~-~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~L~~~l-- 404 (585)
++ ..+.. ..|++.+|++|.+.+..... .| ..+++.. ........... ..++++..+++.|++.+
T Consensus 312 ~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 390 (568)
T 2c31_A 312 MD-SNQPIAAPVVGDIKSAVSLLRKALKGAPKADAEWTGALKAKVDGNKAKLAGKMTAETPSGMMNYSNSLGVVRDFMLA 390 (568)
T ss_dssp TT-SSSCCSEEEESCHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCTTCBCHHHHHHHHHHHHHH
T ss_pred hc-CCcCCCceeeCCHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHhhhhhhhhhhcccccCCCcCHHHHHHHHHHHhcC
Confidence 86 33222 24899999999988754321 11 1111100 00000000011 34799999999999999
Q ss_pred CCCCEEEecCCccccccc-cccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhC
Q 007917 405 SGDTAVIAETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCG 479 (585)
Q Consensus 405 ~~~~ii~~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~ 479 (585)
|++.+++.|.|++..+.. .+....+.+++.++++|+||+++|+|+|++++ |+++||+++|||+|+ ||+|+++++
T Consensus 391 ~~~~iv~~dg~~~~~~~~~~~~~~~p~~~~~~g~~g~~G~~l~~AiGaala-~~~~vv~i~GDGsf~~~~~el~ta~~~~ 469 (568)
T 2c31_A 391 NPDISLVNEGANALDNTRMIVDMLKPRKRLDSGTWGVMGIGMGYCVAAAAV-TGKPVIAVEGDSAFGFSGMELETICRYN 469 (568)
T ss_dssp CCSSEEEEESSHHHHHHHHHCCCCSTTCEEESTTTTCSSCHHHHHHHHHHH-HCSCEEEEEEHHHHHTTGGGHHHHHHTT
T ss_pred CCCeEEEECChhHHHHHHHHhcccCCCeEEcCCCCccccccHHHHHHHHhC-CCCcEEEEEcchHhhccHHHHHHHHHhC
Confidence 999999999777654433 23333444488899999999999999999999 899999999999999 999999999
Q ss_pred CCeEEEEEeCCce-eeeeee-cCCCC--CCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEE
Q 007917 480 QRSIIFLINNGGY-TIEVEI-HDGPY--NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIE 555 (585)
Q Consensus 480 lpv~ivV~NN~~~-~~~~~~-~~~~~--~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIe 555 (585)
+|++|||+||++| .+.... +.+.+ ..++++||.++|++||+ ++++|++.+||+++|+++++ .++|+|||
T Consensus 470 l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~lie 542 (568)
T 2c31_A 470 LPVTVIIMNNGGIYKGNEADPQPGVISCTRLTRGRYDMMMEAFGG-----KGYVANTPAELKAALEEAVA--SGKPCLIN 542 (568)
T ss_dssp CCEEEEEEESSBSSCSCCCCSBTTBCCTTBCCCCCHHHHHHTTTC-----EEEEESSHHHHHHHHHHHHH--HTSCEEEE
T ss_pred CCeEEEEEeCchhHHHHHHHhhcCCcccCcCCCCCHHHHHHHcCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEE
Confidence 9999999999995 542111 11111 12578999999999999 99999999999999999986 78999999
Q ss_pred EEcCCCCChHHHHHHHHhhh
Q 007917 556 VFVHKDDTSKELLEWGSRVS 575 (585)
Q Consensus 556 V~v~~~~~~~~~~~~~~~~~ 575 (585)
|.+++++.++....|+...+
T Consensus 543 v~~~~~~~~~~~~~~~~~~~ 562 (568)
T 2c31_A 543 AMIDPDAGVESGRIKSLNVV 562 (568)
T ss_dssp EEBCTTSSCC----------
T ss_pred EEeccccCCCcccccccchh
Confidence 99999999887766655433
No 21
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=100.00 E-value=1.2e-85 Score=725.18 Aligned_cols=515 Identities=19% Similarity=0.220 Sum_probs=411.4
Q ss_pred cccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHH
Q 007917 26 VGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSV 104 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~ 104 (585)
.|+++++|++.|+++||++|||+||+++++|+++|.+ ++|++|.++||++|+|||+||||+||+ +||++|+|||++|+
T Consensus 7 ~~~~a~~l~~~L~~~GV~~vfg~PG~~~~~l~~al~~-~~i~~i~~~hE~~Aa~~A~Gyar~tg~pgv~~~TsGpG~~N~ 85 (564)
T 2q28_A 7 MTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQA-EGIRYIGFRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNG 85 (564)
T ss_dssp EEEHHHHHHHHHHHTTCCEEEECCCTTTHHHHHHHHH-TTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHH
T ss_pred cCcHHHHHHHHHHHcCCCEEEECCCcchHHHHHHHHh-CCCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCchHHHH
Confidence 4799999999999999999999999999999999976 479999999999999999999999999 99999999999999
Q ss_pred HHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcchhHHHHHHHHHHhhhc-C
Q 007917 105 LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE-S 183 (585)
Q Consensus 105 ~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~~~~~l~~A~~~a~~~-~ 183 (585)
++||++|+.+++|||+|||++|+...+.+ .+..|..||.++|+++|||+.++.+++++++.+++||+.|.++ |
T Consensus 86 ~~gi~~A~~~~vPll~itg~~~~~~~~~~------~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~ 159 (564)
T 2q28_A 86 LTALANATVNGFPMIMISGSSDRAIVDLQ------QGDYEELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRP 159 (564)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCHHHHHTT------SCCTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHhcCCCEEEEeCCCCccccCCC------CCccccccHHHHHHHhhheeeecCCHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998865521 1123456899999999999999999999999999999999985 7
Q ss_pred CcEEEEecCCCCCCCCCCC--CCCCCCccCCCCCCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHH
Q 007917 184 KPVYISISCNLPGIPHPTF--ARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261 (585)
Q Consensus 184 gPV~i~iP~dv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~ 261 (585)
|||||+||.|++..+.... .....+. ..+. ....++++.+++++++|.++|||+|++|.|+.++++.+++.+|||+
T Consensus 160 GPV~l~iP~dv~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~ 237 (564)
T 2q28_A 160 GGVYLDLPANVLAATMEKDEALTTIVKV-ENPS-PALLPCPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIES 237 (564)
T ss_dssp CEEEEEEEHHHHHCEEEHHHHHHTCCCC-SCSS-CCEEECHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHH
T ss_pred ceEEEEcCHHHhhccccccccccccccc-cCCC-CCCCCCHHHHHHHHHHHHcCCCcEEEECcccccccHHHHHHHHHHH
Confidence 9999999999864211100 0000010 1000 0112345679999999999999999999999988899999999999
Q ss_pred hCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceeec
Q 007917 262 TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVG 341 (585)
Q Consensus 262 l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~~ 341 (585)
+++||++|++|||+||++||+++|. ..+++++++|+||+||+++++..+.++..+.++.++||||+|+.+++
T Consensus 238 ~~~Pv~~t~~~~g~~~~~hp~~~G~--------~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~ 309 (564)
T 2q28_A 238 AQIPFLPMSMAKGILEDTHPLSAAA--------ARSFALANADVVMLVGARLNWLLAHGKKGWAADTQFIQLDIEPQEID 309 (564)
T ss_dssp HTCCEEECGGGTTSSCTTCTTBCGG--------GHHHHHHHCSEEEEESCCCSGGGGGGTTTSCTTCEEEEEESCGGGTT
T ss_pred hCCCEEeccCccccCCCCChhhcCh--------HHHhHhhcCCEEEEECCcccccccccccccCCCCeEEEEeCCHHHhc
Confidence 9999999999999999999999885 24678899999999999997655433333445678999999998886
Q ss_pred CCCccc----cccHHHHHHHHHHHhccCc----c-chhhhhhccC---CCCCCCCCCCCCCCCHHHHHHHHHhhC--CCC
Q 007917 342 NGPSLG----WVFMADFLSALAKKLRKNT----T-ALENYRRIYV---PPGIPVKRAQNEPLRVNVLFKHIQDML--SGD 407 (585)
Q Consensus 342 ~~~~~~----~~~~~~~l~~L~~~l~~~~----~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~L~~~l--~~~ 407 (585)
+.+.. ..|++.+|++|.+.+.... . ++..+++... ............++++.++++.|++.+ |++
T Consensus 310 -~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d 388 (564)
T 2q28_A 310 -SNRPIAVPVVGDIASSMQGMLAELKQNTFTTPLVWRDILNIHKQQNAQKMHEKLSTDTQPLNYFNALSAVRDVLRENQD 388 (564)
T ss_dssp -SSSCCSEEEESCHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHTCCCSSBCHHHHHHHHHHHHTTCTT
T ss_pred -CCCCCCeEEEcCHHHHHHHHHHHhhhcCcCCcHHHHHHHHHHHHhhhhhhhhhhccCCCCcCHHHHHHHHHHHhcCCCC
Confidence 33222 2489999999988775421 1 1111111000 000000011234799999999999999 889
Q ss_pred CEEEecCCcccccccc-ccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHHhCCCe
Q 007917 408 TAVIAETGDSWFNCQK-LRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRS 482 (585)
Q Consensus 408 ~ii~~d~G~~~~~~~~-~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~~~lpv 482 (585)
.+++.|.|++..+... +....+.+++.++++|+||+++|+|+|++++ |+++||+++|||||+ ||+|++++++|+
T Consensus 389 ~ivv~dg~~~~~~~~~~~~~~~p~~~~~~g~~g~~G~~l~~AiGaa~a-~~~~vv~i~GDGsf~~~~~el~ta~~~~l~~ 467 (564)
T 2q28_A 389 IYLVNEGANTLDNARNIIDMYKPRRRLDCGTWGVMGIGMGYAIGASVT-SGSPVVAIEGDSAFGFSGMEIETICRYNLPV 467 (564)
T ss_dssp CEEEEESSHHHHHHHHHSCCCSSSCEEESTTTTCTTCHHHHHHHHHHH-HCSCEEEEEEHHHHHTTGGGHHHHHHTTCCE
T ss_pred EEEEECCchHHHHHHHHhcccCCCeEecCCCCCcccchHHHHHHHhhc-CCCcEEEEEcchHhhccHHHHHHHHHhCCCe
Confidence 9999997766544322 3333334488889999999999999999999 899999999999998 999999999999
Q ss_pred EEEEEeCCce-eeeeee--cCCCC--C-CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEE
Q 007917 483 IIFLINNGGY-TIEVEI--HDGPY--N-VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEV 556 (585)
Q Consensus 483 ~ivV~NN~~~-~~~~~~--~~~~~--~-~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV 556 (585)
++||+||++| ++.... +.+.+ . ..+.+||.++|++||+ ++++|++++||+++|+++++ .++|+||||
T Consensus 468 ~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~el~~al~~a~~--~~~p~liev 540 (564)
T 2q28_A 468 TIVIFNNGGIYRGDGVDLSGAGAPSPTDLLHHARYDKLMDAFRG-----VGYNVTTTDELRHALTTGIQ--SRKPTIINV 540 (564)
T ss_dssp EEEEEECSBSSCSCCCCTTSSCCCCTTBCCTTCCGGGGGGGGTC-----EEEEECSHHHHHHHHHHHHH--HTSCEEEEE
T ss_pred EEEEEeCchhHHHHHHHHhccCCccccccCCCCCHHHHHHHcCC-----eEEEeCCHHHHHHHHHHHHh--CCCCEEEEE
Confidence 9999999995 652211 11211 1 2357899999999999 99999999999999999986 789999999
Q ss_pred EcCCCCChHH
Q 007917 557 FVHKDDTSKE 566 (585)
Q Consensus 557 ~v~~~~~~~~ 566 (585)
.+++++.++.
T Consensus 541 ~~~~~~~~~~ 550 (564)
T 2q28_A 541 VIDPAAGTES 550 (564)
T ss_dssp EBCTTSSCCC
T ss_pred EeccccCCCc
Confidence 9999887754
No 22
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=100.00 E-value=1.8e-84 Score=713.21 Aligned_cols=513 Identities=15% Similarity=0.099 Sum_probs=395.8
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHH
Q 007917 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVL 105 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~ 105 (585)
++++++|++.|+++||++|||+||++++||+++|.++++|++|.++||++|+|||+||||+||+ |||++|+|||++|++
T Consensus 8 ~~~a~~lv~~L~~~GV~~vFg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG~~N~~ 87 (556)
T 3hww_A 8 RRWAAVILEALTRHGVRHICIAPGSRSTLLTLAAAENSAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVANLY 87 (556)
T ss_dssp HHHHHHHHHHHHTTTCCEEEECCCTTSHHHHHHHHHCTTCEEEECSCHHHHHHHHHHHHHHHCSCEEEEECSSHHHHTTH
T ss_pred hHHHHHHHHHHHHCCCCEEEEcCCCCcHHHHHHHhhCCCceEEEecCCcHHHHHHHHHHHhhCCCEEEEECCCcHHHhhh
Confidence 6899999999999999999999999999999999877789999999999999999999999999 999999999999999
Q ss_pred HHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEecCcch------hHHHHHHHHHHh
Q 007917 106 NAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGD------AHELIDTAISTA 179 (585)
Q Consensus 106 ~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~~~~~------~~~~l~~A~~~a 179 (585)
+||++||.+++|||+|||++|+...+++. .|..||.++|+++|||++++.++++ +++.+++||+
T Consensus 88 ~gia~A~~d~vPll~itG~~~~~~~g~~~--------~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~-- 157 (556)
T 3hww_A 88 PALIEAGLTGEKLILLTADRPPELIDCGA--------NQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALG-- 157 (556)
T ss_dssp HHHHHHHHHCCCEEEEEEECCGGGSSSSC--------TTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHhCCCeEEEeCCCCHHHhccCC--------CccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHHh--
Confidence 99999999999999999999999877752 2346889999999999999999875 7777777772
Q ss_pred hhcCCcEEEEecCCCCCCCCCCCC----CCCCCc---cCCCCCCChhhHHHHH-HHHHHHHHhcCCCEEEeCcccchhch
Q 007917 180 LKESKPVYISISCNLPGIPHPTFA----RDPVPF---FLAPKVSNQLGLEAAV-EATADFLNKAVKPVLVGGPNIRVAKA 251 (585)
Q Consensus 180 ~~~~gPV~i~iP~dv~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~l~~a~rpvIi~G~g~~~~~a 251 (585)
..+||||||+||.|++........ ..+... ...+.... ...+.+ ++++++|.+||||+|++|.+ ++++
T Consensus 158 ~~r~GPV~i~iP~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~A~rPvIl~G~~--~~~a 233 (556)
T 3hww_A 158 TLHAGGVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLRE--APRLESEKQRDWFFWRQKRGVVVAGRM--SAEE 233 (556)
T ss_dssp SCCSSCEEEEEECCSCCSCCCSSTTHHHHHTTGGGGGCCSCSSCC--CCCCCCCCCTTHHHHTTSCEEEEECBC--CHHH
T ss_pred cCCCCCEEEeCCcCCCCCCCccccccccccccccccccccccccc--cccccchhhhhhhhccCCCeEEEECCC--ChHH
Confidence 124799999999997542111100 000100 00010000 000111 23456788999999999984 4578
Q ss_pred HHHHHHHHHHhCCCeEEccC-CccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcce
Q 007917 252 QKAFIELADATGYPIAIMPS-GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKA 330 (585)
Q Consensus 252 ~~~l~~lae~l~~Pv~~t~~-gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~ 330 (585)
.+++.+|||++++||++|++ ++|.++++||+++| ++.+++++++||+||+||+++++..+.+|....+..++
T Consensus 234 ~~~l~~lae~~~~PV~~t~~~~~~~~~~~~~~~lg-------~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~ 306 (556)
T 3hww_A 234 GKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLG-------NAKATSELQQAQIVVQLGSSLTGKRLLQWQASCEPEEY 306 (556)
T ss_dssp HHHHHHHHHHHTCCEEECTTTCSCCSSCCHHHHTT-------SHHHHHHHTTCSEEEEESBCCCCHHHHHHHHHCCCSEE
T ss_pred HHHHHHHHHhcCCEEEEccCCCCCCCcCcHHHHhc-------CchhhhcccCCCEEEEcCCCcccHHHHHHHhcCCCCeE
Confidence 99999999999999999985 88999999998764 46788999999999999999988766666543333489
Q ss_pred EEEcCCceeecCCCcccc----ccHHHHHHHHHHHhccCccchh---hhhhccCCCCCCCCCCCCCCCCHHHHHHHHHhh
Q 007917 331 IIVQPHRVTVGNGPSLGW----VFMADFLSALAKKLRKNTTALE---NYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDM 403 (585)
Q Consensus 331 i~id~~~~~~~~~~~~~~----~~~~~~l~~L~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 403 (585)
||||+|+.+++ +.+..+ .|++.+|++|.+.. ...+.. ++++..... ......++++.++++.|++.
T Consensus 307 i~id~d~~~~~-~~~~~~~~i~~d~~~~l~~l~~~~--~~~w~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~ 379 (556)
T 3hww_A 307 WIVDDIEGRLD-PAHHRGRRLIANIADWLELHPAEK--RQPWCVEIPRLAEQAMQA----VIARRDAFGEAQLAHRICDY 379 (556)
T ss_dssp EEEESSCSCCC-TTCCSEEEEESCHHHHHHHSCCCC--CCCCCSSHHHHHHHHHHH----HHTTCCSSSHHHHHHTGGGT
T ss_pred EEECCCCccCC-CCCCceEEEEcCHHHHHHhccccc--chHHHHHHHHHHHHHHHH----HhhcccCcCHHHHHHHHHHh
Confidence 99999999887 333322 48899998864321 111111 111110000 00124579999999999999
Q ss_pred CCCCCEEEecCCccccccccc-cccCCCeeEecc-CcccccchHHHHHHHhhhcCCCcEEEEEcCchhH----hHHHHHH
Q 007917 404 LSGDTAVIAETGDSWFNCQKL-RLPENCGYEFQM-QYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ----EISTMIR 477 (585)
Q Consensus 404 l~~~~ii~~d~G~~~~~~~~~-~~~~~~~~~~~~-~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~----eL~ta~~ 477 (585)
+|++++++.+.++...+...+ ..+.+.+++.+. ++|.||+ +|+|+|+++| ++++|||++|||||+ ||+|+++
T Consensus 380 l~~~~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~G~-l~~A~Gaa~a-~~~~vv~i~GDGsf~~~~~eL~ta~~ 457 (556)
T 3hww_A 380 LPEQGQLFVGNSLVVRLIDALSQLPAGYPVYSNRGASGIDGL-LSTAAGVQRA-SGKPTLAIVGDLSALYDLNALALLRQ 457 (556)
T ss_dssp CCTTCEEEECSSHHHHHHHHHCCCCTTCCEEECCSSCCSSSH-HHHHHHHHHH-HCCCEEEEEEHHHHHHTGGGHHHHTT
T ss_pred CCCCCeEEEeCCcHHHHHHHhccCCCCceEEecCcccccccH-HHHHHHHHhc-CCCcEEEEEccHHhhhcchhhHhhcc
Confidence 999999997665443222111 224444567664 4566787 9999999999 789999999999998 9999999
Q ss_pred hCCCeEEEEEeCCceeeeeeec------CCCCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCe
Q 007917 478 CGQRSIIFLINNGGYTIEVEIH------DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSL 551 (585)
Q Consensus 478 ~~lpv~ivV~NN~~~~~~~~~~------~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp 551 (585)
+++|+++||+||++|+|...+. ...|....++||.++|++||+ ++++|++.+||+++|+++++ .+||
T Consensus 458 ~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~-----~~~~v~~~~~l~~al~~a~~--~~gp 530 (556)
T 3hww_A 458 VSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLMPQNVHFEHAAAMFEL-----KYHRPQNWQELETAFADAWR--TPTT 530 (556)
T ss_dssp CSSCEEEEEEESCC-----------------CCCCCCCCSHHHHHHTTC-----EEECCSSHHHHHHHHHHHTT--SSSE
T ss_pred cCCCcEEEEEECCCCCcccCCCCcchhHHHhccCCCCCCHHHHHHHcCC-----cEEecCCHHHHHHHHHHHHh--CCCC
Confidence 9999999999999999843221 113444578999999999999 99999999999999999986 7899
Q ss_pred EEEEEEcCCCCChHHHHHHHHhhhh
Q 007917 552 CFIEVFVHKDDTSKELLEWGSRVSA 576 (585)
Q Consensus 552 ~vIeV~v~~~~~~~~~~~~~~~~~~ 576 (585)
+||||.+++++.++.++++.++++.
T Consensus 531 ~liev~~~~~~~~~~l~~~~~~~~~ 555 (556)
T 3hww_A 531 TVIEMVVNDTDGAQTLQQLLAQVSH 555 (556)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCccccHHHHHHHHHHhhc
Confidence 9999999999999999999998875
No 23
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=99.80 E-value=5.7e-21 Score=175.67 Aligned_cols=136 Identities=17% Similarity=0.154 Sum_probs=112.5
Q ss_pred HHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCC--Cc--eeeecCCCCCHHHH--
Q 007917 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHP--HF--IGTYWGAVSSSFCG-- 297 (585)
Q Consensus 224 ~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp--~~--~G~~~g~~~~~~~~-- 297 (585)
.+++++++|.+||||+|++|+|+.++++.+++++|+|++++||++|.+|||+||++|| ++ +|.+ |..++..++
T Consensus 23 ~v~~aa~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~~gkg~~~~~hp~~~~~~~G~~-G~~~~~~~~~~ 101 (170)
T 3cf4_G 23 SPEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKYINAHML-GFYLTDPKWPG 101 (170)
T ss_dssp CHHHHHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECTTTHHHHTTSSSCEEECCHHHH-HHHTTCTTCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCccchhHHHHHHHHHHHhCCCEEECcccCcccCCCChhhhcceeeec-cccCChhhhhH
Confidence 4789999999999999999999999899999999999999999999999999999999 99 8874 555555666
Q ss_pred -HHhhhCCEEEEeCCcc--CCcccccccccCCCcceEEEcCCceeecCCCccccccHHHHHHHHHHHh
Q 007917 298 -EIVESADAYVFVGPIF--NDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKL 362 (585)
Q Consensus 298 -~~l~~aD~vl~lG~~~--~~~~~~~~~~~~~~~~~i~id~~~~~~~~~~~~~~~~~~~~l~~L~~~l 362 (585)
+.+++||+||++|+++ +++.+..|..+.+ .++|+++.+..... ...+..+..++++++|.+.+
T Consensus 102 ~~~~~~aDlvl~iG~~~~~~~~~t~~~~~~~~-~~iI~i~~~~~~~~-~~~~~~l~~~~~l~~L~~~~ 167 (170)
T 3cf4_G 102 LDGNGNYDMIITIGFKKFYINQVLSAAKNFSN-LKTIAIERGYIQNA-TMSFGNLSKADHYAALDELI 167 (170)
T ss_dssp SSSSCCCSEEEEESCCHHHHHHHHHHHHHHCC-CCEEECSSSCCTTS-SEECCCCCHHHHHHHHHHHH
T ss_pred HHHhhcCCEEEEECCccCccccccccccccCC-CeEEEECCCcccch-hhhhccCCHHHHHHHHHHHH
Confidence 7889999999999999 8888777766555 77886654432111 23455677899999998765
No 24
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.75 E-value=4.5e-18 Score=198.60 Aligned_cols=157 Identities=15% Similarity=0.014 Sum_probs=117.8
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhc-----CCC-----CeEEecCchhhHHHhhhhhhhhcCccEEE
Q 007917 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIA-----EPE-----LNLVGCCNELNAGYAADGYARSRGVGACV 94 (585)
Q Consensus 25 ~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~-----~~~-----i~~i~~~~E~~A~~~A~gyar~tg~~v~~ 94 (585)
..|+|+++++... ..|++.++++|+++.+++.+.+.+ .++ ..++...+|.+|+.||.|.+.+..|++ .
T Consensus 5 ~~~~GNeAvA~~a-~ag~~~~~~YPITPstei~e~l~~~~~~g~~~~~G~~~~v~~~esE~aA~~aaiGAa~aGaR~~-t 82 (1231)
T 2c42_A 5 MTTDGNTATAHVA-YAMSEVAAIYPITPSSTMGEEADDWAAQGRKNIFGQTLTIREMQSEAGAAGAVHGALAAGALTT-T 82 (1231)
T ss_dssp EEEEHHHHHHHHH-HHHCSEEEECCCTTTHHHHHHHHHHHHHTCCCTTSCCCEEEECSSHHHHHHHHHHHHHTTCCEE-E
T ss_pred EEccHHHHHHHHH-HHCCCEEEEECCCCchHHHHHHHHHHHcCCchhcCCceEEEecCChHHHHHHHHHHHHcCChHh-h
Confidence 3589999999997 889999999999999999998842 123 489999999999999999776544544 4
Q ss_pred EeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeE-EEEecCcchhHHHHH
Q 007917 95 VTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCS-QAVVNNLGDAHELID 173 (585)
Q Consensus 95 ~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~-~~~v~~~~~~~~~l~ 173 (585)
.|+|||+.-+...|..+...++|+|+...+++....+- +++. +..|. ++.-.+.| .....+++++.++..
T Consensus 83 ~Ts~~Gl~lm~e~l~~~ag~~~P~Vi~va~R~g~~~gl------si~~-~hsd~--~~ar~~G~~vl~pss~QEa~dl~~ 153 (1231)
T 2c42_A 83 FTASQGLLLMIPNMYKISGELLPGVFHVTARAIAAHAL------SIFG-DHQDI--YAARQTGFAMLASSSVQEAHDMAL 153 (1231)
T ss_dssp EECHHHHHHHHHHHHHHHHTTCCCEEEEEECCCCSSSB------CCSC-CSHHH--HTTTTSSCEEEECCSHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhCCCCCEEEEECCCCccCCCC------cCCC-chhhH--HHHhcCCcEEEECCCHHHHHHHHH
Confidence 58999999999999876667899999999887653221 1111 11221 22222333 345568899999999
Q ss_pred HHHHHhhhcCCcEEEEecC
Q 007917 174 TAISTALKESKPVYISISC 192 (585)
Q Consensus 174 ~A~~~a~~~~gPV~i~iP~ 192 (585)
.||++|...+-||.+....
T Consensus 154 ~Af~lAek~~~PVi~~~Dg 172 (1231)
T 2c42_A 154 VAHLAAIESNVPFMHFFDG 172 (1231)
T ss_dssp HHHHHHHHHCCCEEEEEET
T ss_pred HHHHHHHHcCCCEEEEecC
Confidence 9999999878888877654
No 25
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=99.65 E-value=2.4e-16 Score=161.99 Aligned_cols=116 Identities=18% Similarity=0.092 Sum_probs=97.4
Q ss_pred ccCcccccchHHHHHHHhhhcC----CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 435 QMQYGSIGWSVGATLGYAQAAK----DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 435 ~~~~g~mG~~lpaAiGaalA~p----~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
..+.|.||+++|.|+|+++|.+ ++.|||++|||+|+ +|++|.++++|+++||.|| +|++.... ..
T Consensus 138 ~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN-~~gi~~~~----~~ 212 (368)
T 1w85_A 138 LPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNN-RFAISTPV----EK 212 (368)
T ss_dssp CCCCCSTTHHHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEEC-SEETTEEG----GG
T ss_pred CCCccccCccccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcC-Cccceecc----cc
Confidence 3567999999999999999974 88999999999998 6899999999988888888 58872111 11
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEec--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~eL~~al~~a~~--~~~~gp~vIeV~v~~ 560 (585)
....+||.++|++||+ ++++|+ +++++.+++++|++ .+.++|+|||+.|.+
T Consensus 213 ~~~~~d~~~~a~a~G~-----~~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r 267 (368)
T 1w85_A 213 QTVAKTLAQKAVAAGI-----PGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFR 267 (368)
T ss_dssp TCSCSCSGGGGGGTTC-----CEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCC
T ss_pred ccCCCCHHHHHHHCCC-----CEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeec
Confidence 1245799999999999 899998 79999999999985 246799999999976
No 26
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=99.65 E-value=1.1e-16 Score=166.89 Aligned_cols=167 Identities=13% Similarity=0.036 Sum_probs=127.7
Q ss_pred cCCcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhc---CCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCc
Q 007917 23 GASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIA---EPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTV 99 (585)
Q Consensus 23 ~~~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~---~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~Gp 99 (585)
....|+|++++++.+.+.|++++||+||+++.++++.|.+ ..+++++.+.||.+|+.||.|++++.+| +++.|+||
T Consensus 19 ~~~~~~GneAva~~~~~ag~~~v~~yPgtP~t~i~~~l~~~~~~~g~~~i~~e~E~~a~~~a~Gaa~aG~r-~~~~ts~~ 97 (395)
T 1yd7_A 19 EPDFIQGDEAIARAAILAGCRFYAGYPITPASEIFEAMALYMPLVDGVVIQMEDEIASIAAAIGASWAGAK-AMTATSGP 97 (395)
T ss_dssp EEEEEEHHHHHHHHHHHHTCCEEEECCBTTTBCHHHHHHHHGGGGTCEEEECSCHHHHHHHHHHHHHTTCC-EEEEEETT
T ss_pred ceEEeEHHHHHHHHHHHcCCCEEEEEECcchHHHHHHHHHhhhhcCcEEEEeCCHHHHHHHHHHHHHhCCc-EEEEeCch
Confidence 3446899999999999999999999999999999999864 2469999999999999999999999998 55579999
Q ss_pred chHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHH-H-hh--hceeEEEEecCcchhHHHHHHH
Q 007917 100 GGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELR-C-FQ--AITCSQAVVNNLGDAHELIDTA 175 (585)
Q Consensus 100 G~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~--~~~k~~~~v~~~~~~~~~l~~A 175 (585)
|+++++.+|.++...++|+++++++++....+... .+ +..|... . .. ++.++.....+++++.+++..|
T Consensus 98 G~~~~~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~-----~~--~~sd~~~~~~~~~g~~g~~vl~p~~~qea~~l~~~A 170 (395)
T 1yd7_A 98 GFSLMQENIGYAVMTETPVVIVDVQRSGPSTGQPT-----LP--AQGDIMQAIWGTHGDHSLIVLSPSTVQEAFDFTIRA 170 (395)
T ss_dssp HHHHHTTTCC----CCCCEEEEEEC---------------------------------CCCCEEECCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCc-----cc--chhHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHH
Confidence 99999999999999999999999998766433211 11 1112112 2 22 4578888999999999999999
Q ss_pred HHHhhhcCCcEEEEecCCCCCC
Q 007917 176 ISTALKESKPVYISISCNLPGI 197 (585)
Q Consensus 176 ~~~a~~~~gPV~i~iP~dv~~~ 197 (585)
|++|...+.||.+.+|.++.+.
T Consensus 171 ~~lA~~~~~PVi~~~~~~l~h~ 192 (395)
T 1yd7_A 171 FNLSEKYRTPVILLTDAEVGHM 192 (395)
T ss_dssp HHHHHHHTSEEEEEECHHHHHC
T ss_pred HHHHHHHCCCEEEEcchhHhCe
Confidence 9999988899999999887543
No 27
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=99.62 E-value=1.2e-15 Score=166.89 Aligned_cols=113 Identities=21% Similarity=0.289 Sum_probs=99.0
Q ss_pred cCcccccchHHHHHHHhhhcC-----------CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeee
Q 007917 436 MQYGSIGWSVGATLGYAQAAK-----------DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEI 498 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~p-----------~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~ 498 (585)
...|+||+++|+|+|+++|.+ +++|+|++|||+|+ +|.+|.++++|.+|+|+||++|++....
T Consensus 111 ~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal~~A~~~~L~~livi~nnN~~~i~~~~ 190 (632)
T 3l84_A 111 IATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISIEGDV 190 (632)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEG
T ss_pred cCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHHHHHHHcCCCcEEEEEECCCcccccch
Confidence 346899999999999999987 89999999999997 8999999999999999999999983211
Q ss_pred cCCCCCCCCCCCHHHHHHHhcCCCCCccEEEec--CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007917 499 HDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATGEQKDSLCFIEVFVHK 560 (585)
Q Consensus 499 ~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~eL~~al~~a~~~~~~gp~vIeV~v~~ 560 (585)
......||.+++++||+ ++++|+ +.++|.++|+++.+ .++|+||+|+|.+
T Consensus 191 -----~~~~~~d~~~~~~a~G~-----~~~~vdGhd~~~l~~al~~A~~--~~~P~lI~v~T~k 242 (632)
T 3l84_A 191 -----GLAFNENVKMRFEAQGF-----EVLSINGHDYEEINKALEQAKK--STKPCLIIAKTTI 242 (632)
T ss_dssp -----GGTCCCCHHHHHHHTTC-----EEEEEETTCHHHHHHHHHHHHT--CSSCEEEEEECCT
T ss_pred -----hhhcChhHHHHHHHcCC-----eEEEEeeCCHHHHHHHHHHHHh--CCCCEEEEEeeEe
Confidence 11235799999999999 899997 89999999999986 7899999999875
No 28
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=99.61 E-value=1e-15 Score=158.99 Aligned_cols=115 Identities=19% Similarity=0.193 Sum_probs=96.1
Q ss_pred cCcccccchHHHHHHHhhhcC----CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCC
Q 007917 436 MQYGSIGWSVGATLGYAQAAK----DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNV 505 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~p----~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~ 505 (585)
...|+||+++|.|+|+++|.+ ++.|||++|||+|+ +|++|.++++|+++||.|| +|++..... ..
T Consensus 159 ~~~g~lG~~lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN-~~~i~~~~~----~~ 233 (400)
T 2bfd_A 159 TISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNN-GYAISTPTS----EQ 233 (400)
T ss_dssp CCCSSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEEC-SEETTEEGG----GT
T ss_pred ccCccccccccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECC-ceeeeeccc----cc
Confidence 445999999999999999987 89999999999998 8999999999988888888 788722111 11
Q ss_pred CCCCCHHHHHHHhcCCCCCccEEEec--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007917 506 IKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHK 560 (585)
Q Consensus 506 ~~~~d~~~la~a~G~~~~~~~~~~v~--~~~eL~~al~~a~~--~~~~gp~vIeV~v~~ 560 (585)
....||.++|++||+ ++++|+ +++++..++++|++ ...++|+|||+.|.+
T Consensus 234 ~~~~d~~~~a~a~G~-----~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR 287 (400)
T 2bfd_A 234 YRGDGIAARGPGYGI-----MSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYR 287 (400)
T ss_dssp CSSSTTGGGTGGGTC-----EEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred CCCCCHHHHHHHcCC-----cEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeee
Confidence 245799999999999 999997 68899999998874 125799999999954
No 29
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=99.60 E-value=2.1e-15 Score=156.60 Aligned_cols=115 Identities=17% Similarity=0.105 Sum_probs=92.9
Q ss_pred cCcccccchHHHHHHHhhhc----CCCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCC
Q 007917 436 MQYGSIGWSVGATLGYAQAA----KDKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNV 505 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~----p~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~ 505 (585)
.+.|+||+++|.|+|+++|. +++.|||++|||+|+ +|++|.++++|+++| +||++|++..... ..
T Consensus 178 ~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~V-v~NN~~gi~~~~~----~~ 252 (407)
T 1qs0_A 178 TISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILN-VVNNQWAISTFQA----IA 252 (407)
T ss_dssp CCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEE-EEECSEETTEEGG----GG
T ss_pred ccccccccchhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEE-EECCCcceeeccc----cc
Confidence 34799999999999999985 488999999999997 699999999995555 5555899732111 11
Q ss_pred C-CCCCHHHHHHHhcCCCCCccEEEec--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007917 506 I-KNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHK 560 (585)
Q Consensus 506 ~-~~~d~~~la~a~G~~~~~~~~~~v~--~~~eL~~al~~a~~--~~~~gp~vIeV~v~~ 560 (585)
. ...||.++|++||+ ++++|+ +++++..++++|++ ...++|+|||+.|.+
T Consensus 253 ~~~~~d~a~~a~a~G~-----~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 307 (407)
T 1qs0_A 253 GGESTTFAGRGVGCGI-----ASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYR 307 (407)
T ss_dssp TTTTCCSTHHHHHTTC-----EEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCC
T ss_pred cCCCCCHHHHHHHcCC-----eEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeec
Confidence 1 35799999999999 999998 67899999998875 236899999999975
No 30
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=99.60 E-value=6.7e-17 Score=147.35 Aligned_cols=104 Identities=12% Similarity=0.137 Sum_probs=84.3
Q ss_pred HHHH-HHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCC-CC-CCceeeecCCCCCHHHHHHh-
Q 007917 225 VEAT-ADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPE-HH-PHFIGTYWGAVSSSFCGEIV- 300 (585)
Q Consensus 225 ~~~~-~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~-~h-p~~~G~~~g~~~~~~~~~~l- 300 (585)
++++ +++|++||||+|++|+ +..+++.++|++|+|+ ++||++|.+|+|.||+ +| |++.+. |.. ...+...
T Consensus 24 i~~a~a~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvtT~~g~g~~~~~~~~p~~~~~--G~~--~~g~~~~~ 97 (174)
T 1ytl_A 24 KGKPVANMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVATGSAITRFIDAGLGEKVNYA--VLH--ELTQFLLD 97 (174)
T ss_dssp CHHHHHHHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEEETTHHHHHHHTTCGGGSEEE--CHH--HHHHHHHS
T ss_pred HHHHHHHHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEEcccccCcCCCCCCCcccccc--ccH--HHHHHhhh
Confidence 5688 9999999999999999 9888999999999999 9999999999999999 99 844432 111 2334444
Q ss_pred ---------hhCCEEEEeCCccC--CcccccccccCCCcceEEEc
Q 007917 301 ---------ESADAYVFVGPIFN--DYSSVGYSLLIKKEKAIIVQ 334 (585)
Q Consensus 301 ---------~~aD~vl~lG~~~~--~~~~~~~~~~~~~~~~i~id 334 (585)
++||+||++|++|+ ++.+..|..+.++.++||||
T Consensus 98 ~~~~~~~~~~~aDLvI~iG~rf~~~~~~t~~~~~fap~akii~Id 142 (174)
T 1ytl_A 98 PDWKGFDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAID 142 (174)
T ss_dssp TTCCCTTSSCCCSEEEEESCCHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred hhhhhhcccCCCCEEEEECCcCCccccccccccccCCCCeEEEeC
Confidence 89999999999997 44445566565677899986
No 31
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=99.60 E-value=2.4e-15 Score=166.19 Aligned_cols=167 Identities=17% Similarity=0.206 Sum_probs=115.9
Q ss_pred CCHHHHHHHHHhhCC-CCCEEEecCCccc----ccc---ccccccCC---C--------eeEeccCcccccchHHHHHHH
Q 007917 391 LRVNVLFKHIQDMLS-GDTAVIAETGDSW----FNC---QKLRLPEN---C--------GYEFQMQYGSIGWSVGATLGY 451 (585)
Q Consensus 391 ~~~~~~~~~L~~~l~-~~~ii~~d~G~~~----~~~---~~~~~~~~---~--------~~~~~~~~g~mG~~lpaAiGa 451 (585)
+....++.+|...+. +++.++.|.|... ++. ..+...+. . +.....+.|+||+++|+|+|+
T Consensus 56 lg~v~l~~aL~~~~~~~~D~~v~~~GH~~y~~~~l~G~~~~~~~~r~~~g~~G~p~~~~s~~~~~~~G~~G~gl~~AvG~ 135 (629)
T 2o1x_A 56 LGAVDIITALHYVLDSPRDRILFDVGHQAYAHKILTGRRDQMADIKKEGGISGFTKVSESEHDAITVGHASTSLTNALGM 135 (629)
T ss_dssp HHTHHHHHHHHHHSCTTTSEEEESSSTTCHHHHHTTTTGGGGGGTTSTTSCCSSCCGGGCTTCCSCCSSSSCHHHHHHHH
T ss_pred hhHHHHHHHHHhhcCCCCCeEEecCchHHHHHHHHhCcHhHHhCcccCCCCCCCCCCCCCCCCCcCCCcccccHhHHHHH
Confidence 455677777776666 7888899988532 111 01111111 0 012356789999999999999
Q ss_pred hhh----cCCCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeee-----c------CCCCCCC----
Q 007917 452 AQA----AKDKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEI-----H------DGPYNVI---- 506 (585)
Q Consensus 452 alA----~p~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~-----~------~~~~~~~---- 506 (585)
++| .++++|||++|||+|+ +|++|.++++|++ +|+||++|++.... + ...|..+
T Consensus 136 AlA~k~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli-~IvnnN~~~i~~~~~~~~~~~~~l~~~~~y~~~~~~~ 214 (629)
T 2o1x_A 136 ALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMGRKML-IVLNDNEMSISENVGAMNKFMRGLQVQKWFQEGEGAG 214 (629)
T ss_dssp HHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEE-EEEEECSBSSSBCCSSHHHHC----------------
T ss_pred HHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEE-EEEECCCCCCCCChhHHHHHHHHHhhchhHHHHHHHH
Confidence 999 4899999999999998 7999999999975 55777799872111 0 0111110
Q ss_pred -------CC---------CCHH---------HHHHHhcCCCCCccEE-Eec--CHHHHHHHHHHhhhcCCCCeEEEEEEc
Q 007917 507 -------KN---------WDYT---------GLVNAIHNGEGKCWTA-KVR--SEDELTEAMKTATGEQKDSLCFIEVFV 558 (585)
Q Consensus 507 -------~~---------~d~~---------~la~a~G~~~~~~~~~-~v~--~~~eL~~al~~a~~~~~~gp~vIeV~v 558 (585)
.. .||. +++++||+ +++ +|+ +.++|.++|+++++ .++|+||||.|
T Consensus 215 ~~~~~~~g~~~~~~~~~~~d~~~~~~~p~~~~~~ea~G~-----~~~g~vdG~d~~~l~~al~~A~~--~~~P~lI~v~t 287 (629)
T 2o1x_A 215 KKAVEAVSKPLADFMSRAKNSTRHFFDPASVNPFAAMGV-----RYVGPVDGHNVQELVWLLERLVD--LDGPTILHIVT 287 (629)
T ss_dssp -----------------------------CCCTTGGGTC-----EEEEEEESSCHHHHHHHHHHHTT--SSSEEEEEEEC
T ss_pred HHHHhccchHHHHHHHHHHHHHHhhcCcccchHHHhcCC-----eEEeeECCcCHHHHHHHHHHHHh--cCCCEEEEEEE
Confidence 01 1543 89999999 888 886 99999999999986 68999999999
Q ss_pred CCCCChH
Q 007917 559 HKDDTSK 565 (585)
Q Consensus 559 ~~~~~~~ 565 (585)
.+..-.+
T Consensus 288 ~kg~G~~ 294 (629)
T 2o1x_A 288 TKGKGLS 294 (629)
T ss_dssp CTTTTCH
T ss_pred ecCCCCC
Confidence 8765544
No 32
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=99.59 E-value=2.7e-15 Score=165.83 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=97.1
Q ss_pred cCcccccchHHHHHHHhhhcC--------------CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeee
Q 007917 436 MQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIE 495 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~p--------------~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
...|+||+++|+|+|+++|.+ +++|+|++|||+|+ +|.+|.++++|.+|+|+||++|++.
T Consensus 152 ~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~ 231 (711)
T 3uk1_A 152 TTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGISID 231 (711)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETT
T ss_pred cCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCCcccc
Confidence 356899999999999999987 78999999999997 8999999999999999999999983
Q ss_pred eeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEE-ec--CHHHHHHHHHHhhhcCCCCeEEEEEEcCCC
Q 007917 496 VEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAK-VR--SEDELTEAMKTATGEQKDSLCFIEVFVHKD 561 (585)
Q Consensus 496 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~-v~--~~~eL~~al~~a~~~~~~gp~vIeV~v~~~ 561 (585)
.... .....||.+++++||+ ++++ |+ +.++|.++|+++.+ .++|+||+|+|.+.
T Consensus 232 ~~~~-----~~~~~d~~~~~~a~G~-----~~~~~vdG~d~~~l~~Al~~A~~--~~~P~lI~v~T~kG 288 (711)
T 3uk1_A 232 GDVV-----NWFHDDTPKRFEAYGW-----NVIPNVNGHDVDAIDAAIAKAKR--SDKPSLICCKTRIG 288 (711)
T ss_dssp EEGG-----GTCCCCHHHHHHHTTC-----EEEEEEETTCHHHHHHHHHHHTT--CSSCEEEEEEC---
T ss_pred cchh-----hhcCCCHHHHHHHcCC-----cEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEEccccc
Confidence 2111 1135799999999999 8998 64 89999999999985 78999999998753
No 33
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=99.57 E-value=5.7e-15 Score=162.71 Aligned_cols=114 Identities=17% Similarity=0.155 Sum_probs=95.3
Q ss_pred cCcccccchHHHHHHHhhhcC--------------CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeee
Q 007917 436 MQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIE 495 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~p--------------~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
...|+||+++|+|+|+++|.+ +++|+|++|||+++ +|++|.+++||.+|+|+||++|++.
T Consensus 113 ~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~~~i~ 192 (663)
T 3kom_A 113 TTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNISID 192 (663)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC----
T ss_pred cCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCCcccc
Confidence 357999999999999999977 78999999999997 8999999999999999999999983
Q ss_pred eeecCCCCCCCCCCCHHHHHHHhcCCCCCccEE-Eec--CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007917 496 VEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTA-KVR--SEDELTEAMKTATGEQKDSLCFIEVFVHK 560 (585)
Q Consensus 496 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~-~v~--~~~eL~~al~~a~~~~~~gp~vIeV~v~~ 560 (585)
. ........||.+++++||+ +++ +|+ +.++|.++|+++.+ ..++|+||+++|.+
T Consensus 193 ~-----~~~~~~~~d~~~~~~a~G~-----~~~~~vdG~d~~~l~~al~~A~~-~~~~P~lI~~~T~k 249 (663)
T 3kom_A 193 G-----DTKGWFSDNTPERFRAYGW-----HVIENVDGHDFVAIEKAINEAHS-QQQKPTLICCKTVI 249 (663)
T ss_dssp ------CGGGTCCCCHHHHHHHTTC-----EEEEEEETTCHHHHHHHHHHHHH-CSSSCEEEEEECCT
T ss_pred c-----chhhhcchhHHHHHHHCCC-----eEEEEEcCCCHHHHHHHHHHHHh-cCCCCEEEEEeccc
Confidence 2 1112235799999999999 898 786 89999999999984 24899999999874
No 34
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=99.56 E-value=9.8e-15 Score=161.12 Aligned_cols=114 Identities=18% Similarity=0.245 Sum_probs=98.8
Q ss_pred CcccccchHHHHHHHhhhcC--------------CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeee
Q 007917 437 QYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEV 496 (585)
Q Consensus 437 ~~g~mG~~lpaAiGaalA~p--------------~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~ 496 (585)
..|+||+++|+|+|+++|.+ +++|+|++|||+++ +|++|.++++|.+|+|+||++|++.
T Consensus 138 ~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~- 216 (690)
T 3m49_A 138 TTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDISLD- 216 (690)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSBCSS-
T ss_pred CCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECCCeecc-
Confidence 56899999999999999976 88999999999997 8899999999999999999999982
Q ss_pred eecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEe---cCHHHHHHHHHHhhhcCCCCeEEEEEEcCCC
Q 007917 497 EIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKV---RSEDELTEAMKTATGEQKDSLCFIEVFVHKD 561 (585)
Q Consensus 497 ~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v---~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~ 561 (585)
+........|+.+++++||+ ++++| .+.++|.++|+++.+ ..++|+||+|+|.+.
T Consensus 217 ----~~~~~~~~~d~~~~~~a~G~-----~~~~v~DG~d~~~l~~Al~~a~~-~~~~P~lI~v~T~kG 274 (690)
T 3m49_A 217 ----GDLNRSFSESVEDRYKAYGW-----QVIRVEDGNDIEAIAKAIEEAKA-DEKRPTLIEVRTTIG 274 (690)
T ss_dssp ----SBGGGTCCCCHHHHHHHHTC-----EEEEESCTTCHHHHHHHHHHHHH-CCSSCEEEEEECCTT
T ss_pred ----cchhhccchhHHHHHHHcCC-----cEEEEecCCCHHHHHHHHHHHHh-cCCCCEEEEEEeecc
Confidence 21112245799999999999 99999 689999999999974 358999999998753
No 35
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=99.56 E-value=3.8e-15 Score=153.58 Aligned_cols=111 Identities=18% Similarity=0.180 Sum_probs=82.6
Q ss_pred cccchHHHHHHHhhhcCCCcEEEEEcCchhH-----h-HHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHH
Q 007917 440 SIGWSVGATLGYAQAAKDKRVIACIGDGSFQ-----E-ISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTG 513 (585)
Q Consensus 440 ~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~-----e-L~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~ 513 (585)
+||+++|+|+|++++.++++|||++|||+|+ | |++|.++++|+++||.||+ |++..... .....+||.+
T Consensus 149 ~l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~-~gi~~~~~----~~~~~~d~~~ 223 (367)
T 1umd_A 149 HVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNF-YAISVDYR----HQTHSPTIAD 223 (367)
T ss_dssp THHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECS-EETTEEHH----HHCSSSCSGG
T ss_pred hhhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCC-eeeccChh----hccCCCCHHH
Confidence 4555555555556667889999999999998 6 9999999999888888888 99821110 1124579999
Q ss_pred HHHHhcCCCCCccEEEecCHHHH--HHHHHHhhh--cCCCCeEEEEEEcCC
Q 007917 514 LVNAIHNGEGKCWTAKVRSEDEL--TEAMKTATG--EQKDSLCFIEVFVHK 560 (585)
Q Consensus 514 la~a~G~~~~~~~~~~v~~~~eL--~~al~~a~~--~~~~gp~vIeV~v~~ 560 (585)
++++||+ ++++|+..+.+ ..+++++++ ...++|+|||+.|.+
T Consensus 224 ~a~a~G~-----~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~r 269 (367)
T 1umd_A 224 KAHAFGI-----PGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYR 269 (367)
T ss_dssp GGGGTTS-----CEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCC
T ss_pred HHHHcCC-----cEEEeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeec
Confidence 9999999 89999865554 444444432 136899999999986
No 36
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=99.55 E-value=8.1e-15 Score=162.19 Aligned_cols=114 Identities=19% Similarity=0.183 Sum_probs=99.0
Q ss_pred ccCcccccchHHHHHHHhhhcC--------------CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceee
Q 007917 435 QMQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTI 494 (585)
Q Consensus 435 ~~~~g~mG~~lpaAiGaalA~p--------------~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~ 494 (585)
....|+||+++|+|+|+++|.+ +++|+|++|||+++ +|.+|.++++|.+|+|+||++|++
T Consensus 114 ~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i 193 (651)
T 2e6k_A 114 EVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNRISI 193 (651)
T ss_dssp CSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECCEET
T ss_pred eeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHHHHHHHHHHcCCCeEEEEEECCCccc
Confidence 3567999999999999999963 78999999999998 799999999999999999999998
Q ss_pred eeeecCCCCCCCCCCCHHHHHHHhcCCCCCccEE-Eec--CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007917 495 EVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTA-KVR--SEDELTEAMKTATGEQKDSLCFIEVFVHK 560 (585)
Q Consensus 495 ~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~-~v~--~~~eL~~al~~a~~~~~~gp~vIeV~v~~ 560 (585)
...... . ...|+.+++++||+ +++ +|+ +.++|.++|+++.+ .++|+||+++|.+
T Consensus 194 ~~~~~~----~-~~~d~~~~~~a~G~-----~~~~~vdG~d~~~l~~al~~a~~--~~~P~lI~~~t~k 250 (651)
T 2e6k_A 194 DGPTDL----A-FTEDVLARYRAYGW-----QTLRVEDVNDLEALRKAIKLAKL--DERPTLIAVRSHI 250 (651)
T ss_dssp TEEGGG----T-CCSCHHHHHHHTTC-----EEEEESCTTCHHHHHHHHHHHHH--SSSCEEEEEECCT
T ss_pred cccccc----c-cCccHHHHHHhCCC-----eEEEEeCCCCHHHHHHHHHHHHH--CCCCEEEEEEeEe
Confidence 321111 1 25799999999999 898 887 89999999999986 7899999999985
No 37
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=99.55 E-value=2.9e-14 Score=157.41 Aligned_cols=162 Identities=17% Similarity=0.211 Sum_probs=108.2
Q ss_pred CCHHHHHHHHHhhCC-CCCEEEecCCcccccc-------c---cccc-------cCCC-eeEeccCcccccchHHHHHHH
Q 007917 391 LRVNVLFKHIQDMLS-GDTAVIAETGDSWFNC-------Q---KLRL-------PENC-GYEFQMQYGSIGWSVGATLGY 451 (585)
Q Consensus 391 ~~~~~~~~~L~~~l~-~~~ii~~d~G~~~~~~-------~---~~~~-------~~~~-~~~~~~~~g~mG~~lpaAiGa 451 (585)
+....+...|...+. +++.++.|.|...+.. . .++. |... .-....+.|+||+++|+|+|+
T Consensus 54 lg~~~~~~~l~~~~~~~~D~~v~~~gH~~y~~~~l~G~~~~~~~~r~~~g~~g~~~~~~s~~~~~~~G~~G~gl~~A~G~ 133 (621)
T 2o1s_A 54 LGTVELTVALHYVYNTPFDQLIWDVGHQAYPHKILTGRRDKIGTIRQKGGLHPFPWRGESEYDVLSVGHSSTSISAGIGI 133 (621)
T ss_dssp HTTHHHHHHHHHHSCTTTSEEEESSSTTCHHHHHTTTTGGGGGGTTSTTSCCSSCCTTTCTTCCSCCSSSSCHHHHHHHH
T ss_pred hhHHHHHHHHHhccCCCCCEEEEeCchHHHHHHHHhCCHhhhhcccccCCCCCCCCCCCCCCCccCCcccchHHHHHHHH
Confidence 555667777776676 7788888877421100 0 0111 1100 001234589999999999999
Q ss_pred hhhc----CCCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeeec-----------CCCCCC-----
Q 007917 452 AQAA----KDKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEIH-----------DGPYNV----- 505 (585)
Q Consensus 452 alA~----p~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~~-----------~~~~~~----- 505 (585)
++|. ++++|||++|||+|+ +|++|.++++|++ +|+||++|++..... ...|..
T Consensus 134 AlA~~~~~~~~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli-~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~ 212 (621)
T 2o1s_A 134 AVAAEKEGKNRRTVCVIGDGAITAGMAFEAMNHAGDIRPDML-VILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGG 212 (621)
T ss_dssp HHHHHHHTSCCCEEEEEETTGGGSHHHHHHHHHHHHHCCSEE-EEEEECC------------------------------
T ss_pred HHHHHHhCCCCeEEEEEchhhhhccHHHHHHHHHHhhCCCEE-EEEeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHH
Confidence 9995 789999999999998 7999999999986 556777998721110 001110
Q ss_pred --C-C-----------CCCH-------HHHHHHhcCCCCCccEE-Eec--CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007917 506 --I-K-----------NWDY-------TGLVNAIHNGEGKCWTA-KVR--SEDELTEAMKTATGEQKDSLCFIEVFVHK 560 (585)
Q Consensus 506 --~-~-----------~~d~-------~~la~a~G~~~~~~~~~-~v~--~~~eL~~al~~a~~~~~~gp~vIeV~v~~ 560 (585)
+ . ..|| .+++++||+ +++ +|+ +.++|.++|+++++ .++|+||||+|.+
T Consensus 213 ~~~~~~~p~~~~~~~r~~~~~~~~~~p~~~~ea~G~-----~~~g~vdG~d~~~l~~al~~A~~--~~gP~lI~v~t~k 284 (621)
T 2o1s_A 213 KKVFSGVPPIKELLKRTEEHIKGMVVPGTLFEELGF-----NYIGPVDGHDVLGLITTLKNMRD--LKGPQFLHIMTKK 284 (621)
T ss_dssp --------------------------CHHHHHHTTC-----EEEEEEETTCHHHHHHHHHHHHH--SCSEEEEEEECCC
T ss_pred HHHHhccchHHHHHHHHHHHhhhccChhhHHHHCCC-----eEeeeeCCCCHHHHHHHHHHHHH--cCCCEEEEEEEec
Confidence 0 0 0244 689999999 888 784 89999999999986 6899999999975
No 38
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=99.55 E-value=1.1e-14 Score=149.04 Aligned_cols=113 Identities=19% Similarity=0.167 Sum_probs=91.3
Q ss_pred cCcccccchHHHHHHHhhhcC----CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCC
Q 007917 436 MQYGSIGWSVGATLGYAQAAK----DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNV 505 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~p----~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~ 505 (585)
.+.|+||+++|.|+|+++|.+ ++.|||++|||+++ +|++|..+++|+++||.|| +|++..... ..
T Consensus 137 ~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN-~~g~~t~~~----~~ 211 (365)
T 2ozl_A 137 GGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN-RYGMGTSVE----RA 211 (365)
T ss_dssp CCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEEC-SEETTEEHH----HH
T ss_pred CCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECC-CcccCCCcc----cc
Confidence 456899999999999999975 88999999999998 6899999999988777666 788721110 01
Q ss_pred CCCCCHHHHHHHhcCCCCCccEEEec--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007917 506 IKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHK 560 (585)
Q Consensus 506 ~~~~d~~~la~a~G~~~~~~~~~~v~--~~~eL~~al~~a~~--~~~~gp~vIeV~v~~ 560 (585)
....||.+ ++||+ ++++|+ +++++..++++|++ .+.+||+|||+.+.+
T Consensus 212 ~~~~~~~~--ra~g~-----p~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R 263 (365)
T 2ozl_A 212 AASTDYYK--RGDFI-----PGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYR 263 (365)
T ss_dssp CSCCCGGG--TTTTS-----CEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCC
T ss_pred cCCCCHHH--HhCCC-----CEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeec
Confidence 13457776 78998 899998 79999999998875 346899999999964
No 39
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=99.54 E-value=1e-14 Score=160.03 Aligned_cols=111 Identities=23% Similarity=0.228 Sum_probs=95.2
Q ss_pred cCcccccchHHHHHHHhhhcC-----CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 436 MQYGSIGWSVGATLGYAQAAK-----DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~p-----~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+.|+||+++|+|+|+++|.+ +++|+|++|||+|+ +|++|.++++|.+++|+||++|++. +...
T Consensus 118 ~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GDG~~~eG~~~Eal~~A~~~~l~~livi~nnN~~~i~-----~~~~ 192 (616)
T 3mos_A 118 VATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQS-----DPAP 192 (616)
T ss_dssp SCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCTTEEEEEEECSBCSS-----SBCT
T ss_pred ccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECccccccCcHHHHHHHHHHcCCCcEEEEEECCCCCCc-----CCcc
Confidence 357999999999999999976 78999999999997 8999999999999999999999982 2111
Q ss_pred -CCCCCCHHHHHHHhcCCCCCccEEEec--CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007917 505 -VIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATGEQKDSLCFIEVFVHK 560 (585)
Q Consensus 505 -~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~eL~~al~~a~~~~~~gp~vIeV~v~~ 560 (585)
.....||.+++++||+ ++++|+ +.++|.++|+++ .++|+||||+|.+
T Consensus 193 ~~~~~~~~~~~~~a~G~-----~~~~VdG~d~~~l~~al~~~----~~~P~lI~v~T~k 242 (616)
T 3mos_A 193 LQHQMDIYQKRCEAFGW-----HAIIVDGHSVEELCKAFGQA----KHQPTAIIAKTFK 242 (616)
T ss_dssp TTTCHHHHHHHHHHTTC-----EEEEEETTCHHHHHHHHHSC----CSSCEEEEEECCT
T ss_pred cccChHHHHHHHHHcCC-----eEEEEcCCCHHHHHHHHHhc----CCCCEEEEEEEec
Confidence 1234689999999999 899996 899999999765 4799999999975
No 40
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=99.54 E-value=1.5e-14 Score=160.60 Aligned_cols=116 Identities=17% Similarity=0.189 Sum_probs=99.4
Q ss_pred ccCcccccchHHHHHHHhhhcC--------------CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceee
Q 007917 435 QMQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTI 494 (585)
Q Consensus 435 ~~~~g~mG~~lpaAiGaalA~p--------------~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~ 494 (585)
..+.|+||+++|+|+|+++|.+ +++|+|++|||+++ +|.+|.++++|.+|+|+||++|++
T Consensus 110 ~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i 189 (669)
T 2r8o_A 110 ETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISI 189 (669)
T ss_dssp CSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEET
T ss_pred ccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHHcCCCcEEEEEECCCcEe
Confidence 4567999999999999999975 78999999999998 799999999999999999999998
Q ss_pred eeeecCCCCCCCCCCCHHHHHHHhcCCCCCccEE-Eec--CHHHHHHHHHHhhhcCCCCeEEEEEEcCCC
Q 007917 495 EVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTA-KVR--SEDELTEAMKTATGEQKDSLCFIEVFVHKD 561 (585)
Q Consensus 495 ~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~-~v~--~~~eL~~al~~a~~~~~~gp~vIeV~v~~~ 561 (585)
...... -...|+.+++++||+ +++ +|+ +.++|.++++++.+ ..++|+||+++|.+.
T Consensus 190 ~~~~~~-----~~~~d~~~~~~a~G~-----~~~~~vdG~d~~~l~~al~~a~~-~~~~P~lI~~~T~kg 248 (669)
T 2r8o_A 190 DGHVEG-----WFTDDTAMRFEAYGW-----HVIRDIDGHDAASIKRAVEEARA-VTDKPSLLMCKTIIG 248 (669)
T ss_dssp TEEGGG-----TCCCCHHHHHHHTTC-----EEEEEEETTCHHHHHHHHHHHHH-CCSSCEEEEEECCTT
T ss_pred cccccc-----ccCccHHHHHHHCCC-----eEEeEECCCCHHHHHHHHHHHHh-cCCCCEEEEEEeEec
Confidence 321111 124699999999999 898 888 99999999999984 357999999999863
No 41
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=99.53 E-value=1.7e-14 Score=160.14 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=98.3
Q ss_pred cCcccccchHHHHHHHhhhcC--------------CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeee
Q 007917 436 MQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIE 495 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~p--------------~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
...|+||+++|.|+|+++|.+ +++|+|++|||+++ +|++|.++++|.+|+|+||++|++.
T Consensus 113 ~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~ 192 (680)
T 1gpu_A 113 VTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKITID 192 (680)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETT
T ss_pred eccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHHhCCCcEEEEEECCCceEe
Confidence 457999999999999999965 78999999999998 7999999999999999999999983
Q ss_pred eeecCCCCCCCCCCCHHHHHHHhcCCCCCccEE-Eec---CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007917 496 VEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTA-KVR---SEDELTEAMKTATGEQKDSLCFIEVFVHK 560 (585)
Q Consensus 496 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~-~v~---~~~eL~~al~~a~~~~~~gp~vIeV~v~~ 560 (585)
..... -...|+.+++++||+ +++ +|+ +.++|.++++++.+ ..++|+||+++|.+
T Consensus 193 ~~~~~-----~~~~d~~~~~~a~G~-----~~~~~vdG~~d~~~l~~al~~A~~-~~~~P~lI~~~T~k 250 (680)
T 1gpu_A 193 GATSI-----SFDEDVAKRYEAYGW-----EVLYVENGNEDLAGIAKAIAQAKL-SKDKPTLIKMTTTI 250 (680)
T ss_dssp EEGGG-----TCCCCHHHHHHHHTC-----EEEEESCTTTCHHHHHHHHHHHHH-CTTSCEEEEEECCT
T ss_pred ccccc-----ccCccHHHHHHhcCC-----eEEEEecCCCCHHHHHHHHHHHHH-CCCCCEEEEEEeec
Confidence 21111 125799999999999 898 888 99999999999984 35799999999976
No 42
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.53 E-value=2.1e-14 Score=159.37 Aligned_cols=114 Identities=20% Similarity=0.224 Sum_probs=98.6
Q ss_pred cCcccccchHHHHHHHhhhc--------------CCCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeee
Q 007917 436 MQYGSIGWSVGATLGYAQAA--------------KDKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIE 495 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~--------------p~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
...|+||+++|+|+|+++|. ++++|+|++|||+++ +|.+|.+++|+.+|+|+||++|++.
T Consensus 124 ~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~ 203 (675)
T 1itz_A 124 VTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISID 203 (675)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETT
T ss_pred ECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccCC
Confidence 46799999999999999996 588999999999998 7999999999999999999999982
Q ss_pred eeecCCCCCCCCCCCHHHHHHHhcCCCCCccEE-Eec---CHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007917 496 VEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTA-KVR---SEDELTEAMKTATGEQKDSLCFIEVFVHK 560 (585)
Q Consensus 496 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~-~v~---~~~eL~~al~~a~~~~~~gp~vIeV~v~~ 560 (585)
..... . ...|+.+++++||+ +++ +|+ +.++|.++|+++.+ ..++|+||+++|.+
T Consensus 204 ~~~~~----~-~~~d~~~~~~a~G~-----~~~~~vdG~~d~~~l~~al~~a~~-~~~~P~lI~~~T~k 261 (675)
T 1itz_A 204 GDTEI----A-FTEDVSTRFEALGW-----HTIWVKNGNTGYDDIRAAIKEAKA-VTDKPTLIKVTTTI 261 (675)
T ss_dssp EEGGG----T-CCSCHHHHHHHTTC-----EEEEESCTTTCHHHHHHHHHHHHH-CCSSCEEEEEECCT
T ss_pred CChhh----h-cChhHHHHHHhCCC-----EEEEEecCCCCHHHHHHHHHHHHH-CCCCeEEEEEeeec
Confidence 21111 1 26799999999999 888 887 99999999999984 35799999999976
No 43
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.48 E-value=9.9e-14 Score=153.75 Aligned_cols=114 Identities=17% Similarity=0.172 Sum_probs=97.6
Q ss_pred cCcccccchHHHHHHHhhhcC--------------CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeee
Q 007917 436 MQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIE 495 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~p--------------~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~ 495 (585)
...|+||+++|.|+|+++|.+ +++|+|++|||+++ ++++|.+++||.+|+|+||++|++.
T Consensus 113 ~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~~i~ 192 (673)
T 1r9j_A 113 VTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYISID 192 (673)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSBCSS
T ss_pred eccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHHHHHhCCCcEEEEEECCCCccc
Confidence 457999999999999999964 78999999999998 6899999999999999999999982
Q ss_pred eeecCCCCCCCCCCCHHHHHHHhcCCCCCccEE-Ee---cCHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007917 496 VEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTA-KV---RSEDELTEAMKTATGEQKDSLCFIEVFVHK 560 (585)
Q Consensus 496 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~-~v---~~~~eL~~al~~a~~~~~~gp~vIeV~v~~ 560 (585)
++.......|+.+.+++||+ +++ +| .+.++|.+++++|.+ ..++|+||+++|.+
T Consensus 193 -----~~~~~~~~~d~~~~~~a~G~-----~~~~~vdG~~d~~~l~~Al~~A~~-~~~~P~lI~~~T~k 250 (673)
T 1r9j_A 193 -----GSTSLSFTEQCHQKYVAMGF-----HVIEVKNGDTDYEGLRKALAEAKA-TKGKPKMIVQTTTI 250 (673)
T ss_dssp -----SBGGGTCCCCHHHHHHHTTC-----EEEEESCTTTCHHHHHHHHHHHHH-CCSSCEEEEEECCT
T ss_pred -----cchhhccCHhHHHHHHHCCC-----eEEEEeCCCCCHHHHHHHHHHHHH-cCCCCEEEEEeccc
Confidence 21111125799999999999 898 78 789999999999974 36799999999976
No 44
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=99.29 E-value=7.7e-12 Score=137.93 Aligned_cols=114 Identities=19% Similarity=0.227 Sum_probs=95.5
Q ss_pred cCcccccchHHHHHHHhhhcC-----------------CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCce
Q 007917 436 MQYGSIGWSVGATLGYAQAAK-----------------DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGY 492 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~p-----------------~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~ 492 (585)
...|++|.++|.|+|+++|.+ +++|+|++|||+++ .+.+|.+++||-+|+|+||++|
T Consensus 130 ~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~ 209 (700)
T 3rim_A 130 ITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQI 209 (700)
T ss_dssp SCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE
T ss_pred ccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcccccChHHHHHHHHHHcCCCcEEEEEECCCc
Confidence 456899999999999999843 67899999999999 6788999999988999999999
Q ss_pred eeeeeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEe---cCHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007917 493 TIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKV---RSEDELTEAMKTATGEQKDSLCFIEVFVHK 560 (585)
Q Consensus 493 ~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v---~~~~eL~~al~~a~~~~~~gp~vIeV~v~~ 560 (585)
++.... ......|+.+.+++||+ ++++| .+.++|.+++++|.+ ..++|+||+++|.+
T Consensus 210 si~~~~-----~~~~~~~~~~~~~a~G~-----~~~~V~DG~D~~al~~Al~~A~~-~~~~P~lI~~~T~k 269 (700)
T 3rim_A 210 SIEDDT-----NIALCEDTAARYRAYGW-----HVQEVEGGENVVGIEEAIANAQA-VTDRPSFIALRTVI 269 (700)
T ss_dssp ETTEEG-----GGTCCCCHHHHHHHHTC-----EEEEEECTTCHHHHHHHHHHHHH-CCSSCEEEEEECCT
T ss_pred ccccch-----hhccchhHHHHHHHcCC-----eEEEECCCCCHHHHHHHHHHHHH-cCCCCEEEEEEEEe
Confidence 882111 11135699999999999 99999 389999999999974 35899999999974
No 45
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=99.01 E-value=1.4e-10 Score=130.58 Aligned_cols=116 Identities=15% Similarity=0.125 Sum_probs=91.7
Q ss_pred ccCcccccchHHHHHHHhhhcC--------------CCcEEEEEcCchh-H-----h-HHHHHHhCCC---eEEEEEeCC
Q 007917 435 QMQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSF-Q-----E-ISTMIRCGQR---SIIFLINNG 490 (585)
Q Consensus 435 ~~~~g~mG~~lpaAiGaalA~p--------------~~~vv~v~GDGsf-~-----e-L~ta~~~~lp---v~ivV~NN~ 490 (585)
....+.||.++|.|+|+++|.+ +..++|++|||+| . | |.+|..+++| +++||.||
T Consensus 241 ~~n~s~Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN- 319 (868)
T 2yic_A 241 TANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNN- 319 (868)
T ss_dssp CCCCSSTTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEEC-
T ss_pred cCCCccccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcC-
Confidence 4456889999999999999853 3479999999998 3 5 8888999998 99999988
Q ss_pred ceeeeeeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEec--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007917 491 GYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHK 560 (585)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~eL~~al~~a~~--~~~~gp~vIeV~v~~ 560 (585)
+|++........ ...++.++|++||+ ++++|+ |++++..++++|++ .+.++|+|||+.+.+
T Consensus 320 ~~g~st~~~~~~----s~~~~~~~a~a~G~-----p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR 384 (868)
T 2yic_A 320 QIGFTTAPTDSR----SSEYCTDVAKMIGA-----PIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYR 384 (868)
T ss_dssp SCBTTBCHHHHC----SSSSTTGGGGGGTC-----CEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_pred CcccccCccccc----cccCHHHHHHhCCC-----cEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeec
Confidence 888721110000 23467789999999 999997 79999999999875 235799999999965
No 46
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=98.92 E-value=2.9e-09 Score=120.26 Aligned_cols=115 Identities=22% Similarity=0.228 Sum_probs=92.8
Q ss_pred cCcccccchHHHHHHHhhhc-----------CCCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeee
Q 007917 436 MQYGSIGWSVGATLGYAQAA-----------KDKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEI 498 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~-----------p~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~ 498 (585)
...|+||.+++.|+|+++++ ++++|+||+|||++. .|..|.+++++-+|+|+||+.+.+
T Consensus 189 ~~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si---- 264 (886)
T 2qtc_A 189 FPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRL---- 264 (886)
T ss_dssp CCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCS----
T ss_pred ccccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCccc----
Confidence 45689999999999999974 478999999999998 788889999988888889998887
Q ss_pred cCCCCC--CCCCCCHHHHHHHhcCCCCCccEEEec---------------------------------------------
Q 007917 499 HDGPYN--VIKNWDYTGLVNAIHNGEGKCWTAKVR--------------------------------------------- 531 (585)
Q Consensus 499 ~~~~~~--~~~~~d~~~la~a~G~~~~~~~~~~v~--------------------------------------------- 531 (585)
+++-. ....-++.++.+++|+ +.++|.
T Consensus 265 -~~~v~~~~~~~~~l~~~~~~~G~-----~~~~v~~g~~~~~ll~~~~~~~l~~~~~~~~d~~~q~~~~~~g~~~r~~~F 338 (886)
T 2qtc_A 265 -DGPVTGNGKIINELEGIFEGAGW-----NVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFF 338 (886)
T ss_dssp -SSBSCTTSCHHHHHHHHHHHTTC-----EEEEECBCTTHHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTS
T ss_pred -CCCccccccccHHHHHHHHhCCC-----CEEEEecchhHHHHHccCCchHHHHHHHhccchhhhhhhhccchHHHHhhc
Confidence 32211 1112478899999999 888873
Q ss_pred --------------------------CHHHHHHHHHHhhhcCCCCeEEEEEEcCCC
Q 007917 532 --------------------------SEDELTEAMKTATGEQKDSLCFIEVFVHKD 561 (585)
Q Consensus 532 --------------------------~~~eL~~al~~a~~~~~~gp~vIeV~v~~~ 561 (585)
+.++|.+++++|.+ ..++|+||+++|.+.
T Consensus 339 ~~~~~~~~l~~~~~d~~i~~l~~dGhD~~~l~~a~~~A~~-~~~~PtlI~~~T~KG 393 (886)
T 2qtc_A 339 GKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQE-TKGKATVILAHTIKG 393 (886)
T ss_dssp TTSHHHHTTTTTCCHHHHHTCCBGGGCHHHHHHHHHHHHH-CCSSCEEEEEECCTT
T ss_pred ccchHHHHHHhhcChhhHhhcccCCCCHHHHHHHHHHHHH-cCCCCEEEEEeeeec
Confidence 68889999999885 236999999999753
No 47
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=98.87 E-value=9.9e-10 Score=126.95 Aligned_cols=115 Identities=15% Similarity=0.126 Sum_probs=89.7
Q ss_pred cCcccccchHHHHHHHhhhcC--------------CCcEEEEEcCchh-H-----h-HHHHHHhCCC---eEEEEEeCCc
Q 007917 436 MQYGSIGWSVGATLGYAQAAK--------------DKRVIACIGDGSF-Q-----E-ISTMIRCGQR---SIIFLINNGG 491 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~p--------------~~~vv~v~GDGsf-~-----e-L~ta~~~~lp---v~ivV~NN~~ 491 (585)
...+.||.++|.|+|+++|.+ +..++|++|||+| . | |.+|..+++| +++||.|| +
T Consensus 487 ~n~s~Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN-~ 565 (1113)
T 2xt6_A 487 ANPSHLEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNN-Q 565 (1113)
T ss_dssp CCCSSTTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEEC-S
T ss_pred CCCccccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeC-C
Confidence 445789999999999999863 3569999999998 3 4 8888899998 88888888 7
Q ss_pred eeeeeeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEec--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007917 492 YTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHK 560 (585)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~eL~~al~~a~~--~~~~gp~vIeV~v~~ 560 (585)
|++........ ...++.+++++||+ ++++|+ |++++..++++|++ .+.++|+|||+.+-+
T Consensus 566 ~gist~~~~~~----s~~~~~~~a~a~G~-----p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR 629 (1113)
T 2xt6_A 566 IGFTTAPTDSR----SSEYCTDVAKMIGA-----PIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYR 629 (1113)
T ss_dssp CBTTBCHHHHC----SSSSTTGGGGGGTC-----CEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_pred cccccCccccc----cccCHHHHHHhcCC-----cEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEc
Confidence 88721110000 12356678999999 999998 99999999998875 235799999999964
No 48
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=98.85 E-value=2.9e-09 Score=120.75 Aligned_cols=115 Identities=15% Similarity=0.143 Sum_probs=84.9
Q ss_pred cCcccccchHHHHHHHhhhcCCC---------cEEEEEcCchh-H-----h-HHHHHHhCCC---eEEEEEeCCceeeee
Q 007917 436 MQYGSIGWSVGATLGYAQAAKDK---------RVIACIGDGSF-Q-----E-ISTMIRCGQR---SIIFLINNGGYTIEV 496 (585)
Q Consensus 436 ~~~g~mG~~lpaAiGaalA~p~~---------~vv~v~GDGsf-~-----e-L~ta~~~~lp---v~ivV~NN~~~~~~~ 496 (585)
..-+.+|.++|.|+|+++|.+.+ .|||++|||+| . | |.+|..+++| +++||.||+ |++..
T Consensus 318 ~~~shlg~~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~-~~ist 396 (933)
T 2jgd_A 318 FNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQ-VGFTT 396 (933)
T ss_dssp CCCSSTTCHHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC------
T ss_pred ccCcccccccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCC-ccccC
Confidence 44577899999999999996544 69999999999 4 4 8888899999 888888776 77722
Q ss_pred -eecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEec--CHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007917 497 -EIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR--SEDELTEAMKTATG--EQKDSLCFIEVFVHK 560 (585)
Q Consensus 497 -~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~--~~~eL~~al~~a~~--~~~~gp~vIeV~v~~ 560 (585)
.... .....++.+++++||+ ++++|+ +++++..++++|.+ ...++|+|||+.+-+
T Consensus 397 ~~~~~----~~~~~~~~~~a~a~g~-----p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR 456 (933)
T 2jgd_A 397 SNPLD----ARSTPYCTDIGKMVQA-----PIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYR 456 (933)
T ss_dssp --------------CGGGGGGTTTC-----CEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_pred CCHHh----cccchhHHHHHHHcCC-----CEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeee
Confidence 1110 1123578888999999 899986 58889999998875 235789999999865
No 49
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=98.33 E-value=5.4e-06 Score=97.31 Aligned_cols=165 Identities=13% Similarity=0.181 Sum_probs=131.3
Q ss_pred CCHHHHHHHHHhhCCCCCEEEecCCcccccc-cccccc----C---CCeeEecc--CcccccchHHH-------------
Q 007917 391 LRVNVLFKHIQDMLSGDTAVIAETGDSWFNC-QKLRLP----E---NCGYEFQM--QYGSIGWSVGA------------- 447 (585)
Q Consensus 391 ~~~~~~~~~L~~~l~~~~ii~~d~G~~~~~~-~~~~~~----~---~~~~~~~~--~~g~mG~~lpa------------- 447 (585)
+.+..+++.|.+.++++.+|+.|+|++.+|. .++..| . +..|..+. +.+.||+|+++
T Consensus 814 Cge~~~ik~l~ql~g~~~iian~tGc~siw~~~~~~~~~~~~~~g~~p~~~~Slf~~~a~mG~G~~~~~~~~~~~~~~~~ 893 (1231)
T 2c42_A 814 CGETPYVRVITQLFGERMFIANATGCSSIWGASAPSMPYKTNRLGQGPAWGNSLFEDAAEYGFGMNMSMFARRTHLADLA 893 (1231)
T ss_dssp CSSHHHHHHHHHHHGGGEEEEECSSHHHHHHHBTTCCCBCCCTTSCCCEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhcCCCeEEEecCchHHHHHhhcccCCcccccCCCCcceecccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467789999999999999999999998874 332212 1 11466553 77999999999
Q ss_pred --------------HH--------------------HHhhhcCC----------------CcEEEEEcCc-hhH----hH
Q 007917 448 --------------TL--------------------GYAQAAKD----------------KRVIACIGDG-SFQ----EI 472 (585)
Q Consensus 448 --------------Ai--------------------GaalA~p~----------------~~vv~v~GDG-sf~----eL 472 (585)
|| |++++.++ ++||++.||| +|+ ||
T Consensus 894 ~~~~~~~~~~~~~~Ai~~w~~~~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~Vv~i~GDG~~~~mg~~eL 973 (1231)
T 2c42_A 894 AKALESDASGDVKEALQGWLAGKNDPIKSKEYGDKLKKLLAGQKDGLLGQIAAMSDLYTKKSVWIFGGDGWAYDIGYGGL 973 (1231)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTTCCSHHHHHHHTTGGGTSCCEEEEEEEHHHHHTTTHHHH
T ss_pred HHHhhccccHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcCCchHHHHHhhhhhhccCCcEEEEeCcHHHHHcchHHH
Confidence 99 99998544 7899999999 776 99
Q ss_pred HHHHHhCCCeEEEEEeCCceeeeeeec-C----CCC-------CCCCCCCHHHHHHHhcCCCCCccEEE---e-cCHHHH
Q 007917 473 STMIRCGQRSIIFLINNGGYTIEVEIH-D----GPY-------NVIKNWDYTGLVNAIHNGEGKCWTAK---V-RSEDEL 536 (585)
Q Consensus 473 ~ta~~~~lpv~ivV~NN~~~~~~~~~~-~----~~~-------~~~~~~d~~~la~a~G~~~~~~~~~~---v-~~~~eL 536 (585)
.|++++++|+++||+||+.|++...+. . +.. .....+||.++|++||+ .+++ + .+++||
T Consensus 974 ~ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a~G~-----~~va~~~v~~~~~~l 1048 (1231)
T 2c42_A 974 DHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMTYGY-----VYVATVSMGYSKQQF 1048 (1231)
T ss_dssp HHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHTTSS-----SEEEEECTTTCHHHH
T ss_pred HHHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHHCCC-----CEEEEEeccCCHHHH
Confidence 999999999999999999999832111 1 111 12346899999999999 7875 3 589999
Q ss_pred HHHHHHhhhcCCCCeEEEEEEcCCCC
Q 007917 537 TEAMKTATGEQKDSLCFIEVFVHKDD 562 (585)
Q Consensus 537 ~~al~~a~~~~~~gp~vIeV~v~~~~ 562 (585)
.++|++|++ .+||+||||.+++..
T Consensus 1049 ~~al~eAl~--~~GP~lI~v~~~c~~ 1072 (1231)
T 2c42_A 1049 LKVLKEAES--FPGPSLVIAYATCIN 1072 (1231)
T ss_dssp HHHHHHHHH--SSSCEEEEEECCCGG
T ss_pred HHHHHHHHh--cCCCEEEEEeecCcc
Confidence 999999997 899999999998764
No 50
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=98.07 E-value=8.2e-06 Score=90.70 Aligned_cols=116 Identities=14% Similarity=0.155 Sum_probs=86.3
Q ss_pred CcccccchHHHHHHHhhhcCCCcEEEEEcCchhH--hHHHH-------HHhCCCeEEEEEeCCceeeeeeecCCCCC--C
Q 007917 437 QYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ--EISTM-------IRCGQRSIIFLINNGGYTIEVEIHDGPYN--V 505 (585)
Q Consensus 437 ~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~--eL~ta-------~~~~lpv~ivV~NN~~~~~~~~~~~~~~~--~ 505 (585)
..|++|+|++.|+|+++.+|+.+|+|++|||... .|++. ..+++.-+++|++++++.+ +++.. .
T Consensus 173 ~tG~LGqGls~AvG~A~~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~N~~~i-----~g~t~l~~ 247 (845)
T 3ahc_A 173 EGGELGYALSHAYGAVMNNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGYKI-----ANPTILAR 247 (845)
T ss_dssp CCSSTTCHHHHHHHHHTTCTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEECSBSS-----SSBCHHHH
T ss_pred CCCCccchHhHHhhhhhcCCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEECCCCcC-----CCCccccc
Confidence 4689999999999999999999999999999987 54443 2467888899999999987 33211 1
Q ss_pred CCCCCHHHHHHHhcCCCCCccEE-Eec-----CHHHHHHHHHHhh------------h-c--CCCCe--EEEEEEcCCCC
Q 007917 506 IKNWDYTGLVNAIHNGEGKCWTA-KVR-----SEDELTEAMKTAT------------G-E--QKDSL--CFIEVFVHKDD 562 (585)
Q Consensus 506 ~~~~d~~~la~a~G~~~~~~~~~-~v~-----~~~eL~~al~~a~------------~-~--~~~gp--~vIeV~v~~~~ 562 (585)
...-|+.+..++||+ +.+ .|+ +++++..++.+++ + . ..++| .+|-++|...-
T Consensus 248 ~~~e~l~~rf~a~Gw-----~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~rT~kG~ 322 (845)
T 3ahc_A 248 ISDEELHDFFRGMGY-----HPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIFRTPKGW 322 (845)
T ss_dssp SCHHHHHHHHHHTTE-----EEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEEECCTTT
T ss_pred cCcHHHHHHHHHCCC-----EEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEECcccC
Confidence 234478999999998 776 664 6777777765433 1 1 13689 99999986543
No 51
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=95.67 E-value=0.14 Score=51.15 Aligned_cols=116 Identities=17% Similarity=0.073 Sum_probs=78.3
Q ss_pred eEE-ecCchhhHHHhhhhhhhhcCccEEEEeCCcchHHHHHHHHH--hh---h----cCCcEEEEeCCCCCccCCCccce
Q 007917 67 NLV-GCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAG--AY---S----ENLPVICIVGGPNSNDYGTNRIL 136 (585)
Q Consensus 67 ~~i-~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~gl~~--A~---~----~~~Pll~I~g~~~~~~~~~~~~~ 136 (585)
|++ ....|++++.+|.|+|...-+.++..|.++.+.-++..|.+ |+ . .++|++++.. +.. .+.+ .-
T Consensus 52 r~~~~gIaE~~~v~~a~G~A~~G~~p~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~--~~~~-g~ 127 (324)
T 1umd_B 52 RVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMP-SGG--GVRG-GH 127 (324)
T ss_dssp TEEECCSCHHHHHHHHHHHHHHTCEEEEECSSGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEE-ECS--SSSC-GG
T ss_pred cEEECchhHHHHHHHHHHHHHCCCEEEEEeccHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEc-CCC--CCCC-CC
Confidence 555 45999999999999998733366666788887768887865 32 1 7899988764 221 1111 22
Q ss_pred eeccCCCChHHHHHHhhhceeE-EEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCCCCC
Q 007917 137 HHTIGLPDFTQELRCFQAITCS-QAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPG 196 (585)
Q Consensus 137 ~~~~~~~~~~d~~~~~~~~~k~-~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~~ 196 (585)
||+. .| ..+++.+..+ .....+++++..+++.|++ .++||+|..|..+..
T Consensus 128 ~hs~-----~~-~a~~~~iP~~~V~~P~d~~e~~~~l~~a~~----~~~Pv~i~~p~~l~~ 178 (324)
T 1umd_B 128 HHSQ-----SP-EAHFVHTAGLKVVAVSTPYDAKGLLKAAIR----DEDPVVFLEPKRLYR 178 (324)
T ss_dssp GSSC-----CC-HHHHHTSTTCEEEECCSHHHHHHHHHHHHH----CSSCEEEEEEGGGSS
T ss_pred ccch-----hH-HHHHhcCCCCEEEEeCCHHHHHHHHHHHHh----cCCCEEEEechHhcC
Confidence 3321 12 3677766553 3456788888888888885 579999998877643
No 52
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=95.55 E-value=0.1 Score=52.21 Aligned_cols=115 Identities=17% Similarity=0.060 Sum_probs=78.3
Q ss_pred eEEec-CchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHHHHHHH-hh----h----cCCcEEEEeCCCCCccCCCccc
Q 007917 67 NLVGC-CNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAG-AY----S----ENLPVICIVGGPNSNDYGTNRI 135 (585)
Q Consensus 67 ~~i~~-~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~gl~~-A~----~----~~~Pll~I~g~~~~~~~~~~~~ 135 (585)
|++.+ ..|++++.+|.|+|.. |. .++..|.++++.-++..|.+ +. . .++|++++.. +.. .+.+ .
T Consensus 51 r~~~~gIaE~~~v~~a~G~A~~-G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~--~~~~-g 125 (324)
T 1w85_B 51 RVFDTPLAESGIGGLAIGLALQ-GFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSP-FGG--GVHT-P 125 (324)
T ss_dssp TEEECCSCHHHHHHHHHHHHHT-TCEEEEBCSSGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEE-ECS--SSCC-C
T ss_pred cEEEcchhHHHHHHHHHHHHhC-CCEEEEEecchhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEe-ccC--CCCC-C
Confidence 67654 5999999999999987 55 66656788888778888864 22 2 7899988753 211 1111 1
Q ss_pred eeeccCCCChHHHHHHhhhceeE-EEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCCCCC
Q 007917 136 LHHTIGLPDFTQELRCFQAITCS-QAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPG 196 (585)
Q Consensus 136 ~~~~~~~~~~~d~~~~~~~~~k~-~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~~ 196 (585)
-||+. . | ..+++.+..+ .....+++++..+++.|++ .++||+|..|..+..
T Consensus 126 ~~hs~----~-~-~a~~~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~i~~p~~l~r 177 (324)
T 1w85_B 126 ELHSD----S-L-EGLVAQQPGLKVVIPSTPYDAKGLLISAIR----DNDPVIFLEHLKLYR 177 (324)
T ss_dssp TTSSC----C-C-HHHHTTSTTCEEECCSSHHHHHHHHHHHHH----SSSCEEEEEETTTSS
T ss_pred Ccccc----c-H-HHHHccCCCCEEEeeCCHHHHHHHHHHHHH----cCCCEEEEechHhcC
Confidence 12221 1 1 3778777653 3455678888888888885 579999999988743
No 53
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=95.24 E-value=0.057 Score=54.50 Aligned_cols=169 Identities=12% Similarity=0.035 Sum_probs=100.4
Q ss_pred eEEecC-chhhHHHhhhhhhhhcCccEEEEeCCcchHHHHHHHHH-hh----h----cCC-cEEEEeCCCCCccCCCccc
Q 007917 67 NLVGCC-NELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAG-AY----S----ENL-PVICIVGGPNSNDYGTNRI 135 (585)
Q Consensus 67 ~~i~~~-~E~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~gl~~-A~----~----~~~-Pll~I~g~~~~~~~~~~~~ 135 (585)
|++.+- .|++++.+|.|+|....+.++..|.++++.-++..+.+ +. . -++ ||+++...... + +..
T Consensus 68 r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~---~-~G~ 143 (342)
T 2bfd_B 68 RVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCV---G-HGA 143 (342)
T ss_dssp TEEECCSCHHHHHHHHHHHHHTTCCEEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCC---S-SCG
T ss_pred eEEEcCcCHHHHHHHHHHHHHCCCeeEEEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCC---C-CCc
Confidence 777665 99999999999998843477667899998878888763 32 1 134 99888553221 1 123
Q ss_pred eeeccCCCChHHHHHHhhhcee-EEEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCCCCCCCCCCCCCCCCCccCCCC
Q 007917 136 LHHTIGLPDFTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPK 214 (585)
Q Consensus 136 ~~~~~~~~~~~d~~~~~~~~~k-~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~ 214 (585)
-||+.. ...+++.+.. ......+++++..+++.|++ .++||+|..|..+.....+.............
T Consensus 144 th~~~~------d~~~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~G~- 212 (342)
T 2bfd_B 144 LYHSQS------PEAFFAHCPGIKVVIPRSPFQAKGLLLSCIE----DKNPCIFFEPKILYRAAAEEVPIEPYNIPLSQ- 212 (342)
T ss_dssp GGSSCC------CHHHHHTSTTCEEECCSSHHHHHHHHHHHHH----SSSCEEEEEEGGGTTSCCEEEESSCCCCCSSC-
T ss_pred chhhHh------HHHHHhcCCCcEEEeeCCHHHHHHHHHHHHh----cCCcEEEEecchhcCCCCCCCCCcccceeCCc-
Confidence 444432 2466676654 33455678888888888876 37999999887664321111000000000000
Q ss_pred CCChhhHHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCC
Q 007917 215 VSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (585)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~P 265 (585)
. +.+.. ..-++|++.|.....+.++..+|.+..|+.
T Consensus 213 -~-------------~v~~~-g~dv~iia~G~~~~~a~~Aa~~L~~~~Gi~ 248 (342)
T 2bfd_B 213 -A-------------EVIQE-GSDVTLVAWGTQVHVIREVASMAKEKLGVS 248 (342)
T ss_dssp -C-------------EEEEC-CSSEEEEECTTHHHHHHHHHHHHHHHHCCC
T ss_pred -e-------------EEecc-CCCEEEEEECHHHHHHHHHHHHHHhhcCCC
Confidence 0 00111 234677777776666777777777654543
No 54
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=94.71 E-value=0.24 Score=49.74 Aligned_cols=115 Identities=14% Similarity=0.123 Sum_probs=79.9
Q ss_pred CeEEec-CchhhHHHhhhhhhhhcCccEEEEeCCcchHHHHHHHHHhhh---------cCCcEEEEeCCCCCccCCCccc
Q 007917 66 LNLVGC-CNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYS---------ENLPVICIVGGPNSNDYGTNRI 135 (585)
Q Consensus 66 i~~i~~-~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~gl~~A~~---------~~~Pll~I~g~~~~~~~~~~~~ 135 (585)
-|++.+ ..|++++.+|.|+|....+.++..+.+..+.-++..+.+.-. .+.||+++... .. .+.+..
T Consensus 62 ~r~~d~gIaE~~~v~~a~G~A~~G~rp~~~~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~--~g~~G~ 138 (341)
T 2ozl_B 62 KRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GA--SAGVAA 138 (341)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHTTCEEEEECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SC--CSSCCG
T ss_pred CcEEECchhHHHHHHHHHHHHHCCCEEEEEeccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cC--CCCCCc
Confidence 378877 699999999999998743366666888888778888876432 78998887663 22 222222
Q ss_pred eeeccCCCChHHHHHHhhhceeEE-EEecCcchhHHHHHHHHHHhhhcCCcEEEEecCCC
Q 007917 136 LHHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (585)
Q Consensus 136 ~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (585)
-| + |..+ .+++.+..+. ....+++++..+++.|++ .++||+|..|..+
T Consensus 139 tH-s----~~~e--a~l~~iP~l~V~~Psd~~e~~~~l~~a~~----~~~Pv~i~~~~~~ 187 (341)
T 2ozl_B 139 QH-S----QCFA--AWYGHCPGLKVVSPWNSEDAKGLIKSAIR----DNNPVVVLENELM 187 (341)
T ss_dssp GG-C----CCCH--HHHHTSTTCEEECCCSHHHHHHHHHHHHH----SSSCEEEEECHHH
T ss_pred ch-h----hHHH--HHhccCCCCEEEEeCCHHHHHHHHHHHHh----cCCCEEEEEChhh
Confidence 23 1 2233 6677765544 445678888888888876 3799999999653
No 55
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=94.40 E-value=0.53 Score=51.30 Aligned_cols=151 Identities=15% Similarity=0.073 Sum_probs=92.8
Q ss_pred HHHHHHHHHHcCCCEEEecCCCChHHHHHhhhc-CCCCeEEe-cCchhhHHHhhhhhhhhcCccEEEEeCCcchHHHHHH
Q 007917 30 GRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIA-EPELNLVG-CCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNA 107 (585)
Q Consensus 30 a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~-~~~i~~i~-~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~g 107 (585)
+++|.+.+++ .=+.+.+-+.-....+++.+.+ .++ |++. ...|++++.+|.|.|....+-++..+.++++.-++..
T Consensus 320 ~~~L~~l~~~-d~~vv~~~aD~~~~~~~~~~~~~~p~-R~~d~gIaE~~~v~~a~G~A~~G~~~~~~~~f~~Fl~~a~dq 397 (616)
T 3mos_A 320 GQALAKLGHA-SDRIIALDGDTKNSTFSEIFKKEHPD-RFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQ 397 (616)
T ss_dssp HHHHHHHHHH-CTTEEEEESSCHHHHSHHHHHHHCGG-GEEECCSCHHHHHHHHHHHHGGGCCEEEEEEEGGGGGGGHHH
T ss_pred HHHHHHHHhh-CCCEEEEeCCcCCCcchhhHHHhCCC-CeEEcCccHHHHHHHHHHHHHcCCCCEEEEehHHHHHHHHHH
Confidence 3444444433 3344544443322333344432 244 6664 5699999999999998766556667889998889999
Q ss_pred HHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEE-EecCcchhHHHHHHHHHHhhhcCCcE
Q 007917 108 IAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQA-VVNNLGDAHELIDTAISTALKESKPV 186 (585)
Q Consensus 108 l~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~-~v~~~~~~~~~l~~A~~~a~~~~gPV 186 (585)
|..+...+.|++++...... ..|.+..-||. ..+..+++.+..... ...++.++..+++.| ...+||+
T Consensus 398 i~~~a~~~~~v~~v~~~~g~-~~G~dG~tH~~------~ed~a~l~~iP~l~V~~P~d~~e~~~~l~~a----~~~~gp~ 466 (616)
T 3mos_A 398 IRMAAISESNINLCGSHCGV-SIGEDGPSQMA------LEDLAMFRSVPTSTVFYPSDGVATEKAVELA----ANTKGIC 466 (616)
T ss_dssp HHHHHHTTCCEEEEEESBSG-GGCTTCGGGCB------SSHHHHHHTSTTEEEECCCSHHHHHHHHHHH----HTCCSEE
T ss_pred HHHHHHhCCCeEEEEECCCc-cccCCCCcccC------HHHHHHhcCCCCCEEEecCCHHHHHHHHHHH----HhcCCCE
Confidence 99888899998876443222 12322223332 234677887765443 334555555555444 4457999
Q ss_pred EEEecCC
Q 007917 187 YISISCN 193 (585)
Q Consensus 187 ~i~iP~d 193 (585)
+|..|.+
T Consensus 467 ~ir~~r~ 473 (616)
T 3mos_A 467 FIRTSRP 473 (616)
T ss_dssp EEECCSS
T ss_pred EEEEeCC
Confidence 9999875
No 56
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=93.86 E-value=0.16 Score=51.05 Aligned_cols=115 Identities=15% Similarity=0.041 Sum_probs=78.3
Q ss_pred eEEec-CchhhHHHhhhhhhhhcCccEEEEeCCcchHHHHHHHHH-h----hh----cCCcEEEEeCCCCCccCCCccce
Q 007917 67 NLVGC-CNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAG-A----YS----ENLPVICIVGGPNSNDYGTNRIL 136 (585)
Q Consensus 67 ~~i~~-~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~gl~~-A----~~----~~~Pll~I~g~~~~~~~~~~~~~ 136 (585)
|++.+ ..|++++.+|.|+|...-+.++..|.++++.-++..+.+ + |. .+.|++++...... .+...
T Consensus 53 r~~~~gisE~~~~~~a~G~A~~G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g~----~~G~t 128 (338)
T 1qs0_B 53 RVFDAPISESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGG----IYGGQ 128 (338)
T ss_dssp TEEECCSCHHHHHHHHHHHHHHTCEEEEECSCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECCS----SSCCS
T ss_pred cEEEccccHHHHHHHHHHHHhCCCEEEEEeccHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCCC----CCCcc
Confidence 78875 799999999999998843466666889888778888764 3 21 35898887633221 11223
Q ss_pred eeccCCCChHHHHHHhhhceeEE-EEecCcchhHHHHHHHHHHhhhcCCcEEEEecCCCC
Q 007917 137 HHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDTAISTALKESKPVYISISCNLP 195 (585)
Q Consensus 137 ~~~~~~~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~ 195 (585)
||+.. ...+++.+..+. ....+++++..+++.|++. ++||+|..|..+.
T Consensus 129 h~s~~------d~~~l~~iP~l~V~~Psd~~e~~~~l~~A~~~----~~Pv~i~~p~~l~ 178 (338)
T 1qs0_B 129 THSQS------PEAMFTQVCGLRTVMPSNPYDAKGLLIASIEC----DDPVIFLEPKRLY 178 (338)
T ss_dssp SSSCC------CHHHHTTSTTCEEECCCSHHHHHHHHHHHHHS----SSCEEEEEEGGGS
T ss_pred ccccc------HHHHHhcCCCCEEEeeCCHHHHHHHHHHHHhc----CCcEEEEEchHhh
Confidence 44321 246677664433 4556788888888888862 7999998886554
No 57
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=93.71 E-value=0.29 Score=52.88 Aligned_cols=115 Identities=12% Similarity=0.096 Sum_probs=80.3
Q ss_pred CCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCch--hH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCC
Q 007917 429 NCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGS--FQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPY 503 (585)
Q Consensus 429 ~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGs--f~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~ 503 (585)
+.+++....-.+ +.-+|.|.+.+. +++.+|++-=|. .. .+.+|...++|+++|.-+-....+..
T Consensus 48 ~i~~v~~~~E~~---Aa~~A~Gyar~t-g~p~v~~~TsGpG~~N~~~~l~~A~~~~vPll~itg~~~~~~~~~------- 116 (566)
T 1ozh_A 48 SIRIIPVRHEAN---AAFMAAAVGRIT-GKAGVALVTSGPGCSNLITGMATANSEGDPVVALGGAVKRADKAK------- 116 (566)
T ss_dssp SSEEEECSSHHH---HHHHHHHHHHHH-SSCEEEEECSTHHHHTTHHHHHHHHHHTCCEEEEEEECCTTTC---------
T ss_pred CCcEEEeCCHHH---HHHHHHHHHHHH-CCCEEEEEccChHHHHHHHHHHHHHhcCCCEEEEeCCCccccCCC-------
Confidence 345555544433 445788887765 678777775443 33 88899999999999987766443311
Q ss_pred CCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007917 504 NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 559 (585)
Q Consensus 504 ~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~-~~~gp~vIeV~v~ 559 (585)
..+...|...+.+.+-- +..++.+++++...+++|+. . ...||+.|+|..|
T Consensus 117 ~~~Q~~d~~~~~~~~tk-----~~~~v~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 117 QVHQSMDTVAMFSPVTK-----YAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQD 170 (566)
T ss_dssp ----CCCHHHHHGGGCS-----EEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred CcccccCHHHHHHHHhh-----eEEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence 11244689999998876 88999999999888888775 2 2359999999987
No 58
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=93.63 E-value=0.4 Score=52.09 Aligned_cols=114 Identities=11% Similarity=0.060 Sum_probs=80.8
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH-----hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ-----EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~-----eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|.|.+.+. +++.+|++-=|.-. .+.+|...++|+++|.-+-....+. . .
T Consensus 51 i~~i~~~~E~~---Aa~~A~Gyar~t-g~p~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~g----~---~ 119 (590)
T 1ybh_A 51 IRNVLPRHEQG---GVFAAEGYARSS-GKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIG----T---D 119 (590)
T ss_dssp CEECCCSSHHH---HHHHHHHHHHHH-SSCEEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTT----T---T
T ss_pred ccEEeeCCHHH---HHHHHHHHHHHH-CCCEEEEeccCchHHHHHHHHHHHHhhCCCEEEEeCcCCccccC----C---C
Confidence 34444443332 446788888875 57777776444333 8888999999999998765543220 1 1
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh-c--CCCCeEEEEEEcC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG-E--QKDSLCFIEVFVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~-~--~~~gp~vIeV~v~ 559 (585)
.+...|...+.+.+-- +..++.+++++...+++|+. . ...||+.|++..|
T Consensus 120 ~~Q~~d~~~~~~~~~k-----~~~~v~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~d 172 (590)
T 1ybh_A 120 AFQETPIVEVTRSITK-----HNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKD 172 (590)
T ss_dssp CTTCCCHHHHHGGGSS-----EEEECCCGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred cccccCHHHHHHHHhC-----eEEecCCHHHHHHHHHHHHHHHhhCCCceEEEEeCcc
Confidence 2345699999999987 88999999999999999886 1 2358999999875
No 59
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=93.50 E-value=0.42 Score=51.72 Aligned_cols=146 Identities=13% Similarity=0.108 Sum_probs=94.5
Q ss_pred HHHHHHHHhhCCCCCEEEecCCcc-ccccc-cccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCch--h
Q 007917 394 NVLFKHIQDMLSGDTAVIAETGDS-WFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGS--F 469 (585)
Q Consensus 394 ~~~~~~L~~~l~~~~ii~~d~G~~-~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGs--f 469 (585)
..+++.|.+ ..=+. ++.=-|.. ..... .+. . .+++....-.+ +.-+|.|.+.+. +++++|++-=|. .
T Consensus 16 ~~l~~~L~~-~GV~~-vfg~PG~~~~~~l~~al~--~-i~~i~~~~E~~---Aa~~A~Gyar~t-g~p~v~~~TsGpG~~ 86 (573)
T 2iht_A 16 HALLSRLRD-HGVGK-VFGVVGREAASILFDEVE--G-IDFVLTRHEFT---AGVAADVLARIT-GRPQACWATLGPGMT 86 (573)
T ss_dssp HHHHHHHHH-TTCCE-EEECCCGGGGTCCSCSST--T-CEEEECSSHHH---HHHHHHHHHHHH-CSCEEEEECTTHHHH
T ss_pred HHHHHHHHH-CCCCE-EEEecCCcchhHHHHHHc--C-CeEEeeCCHHH---HHHHHHHHHHHH-CCCEEEEEccCchHH
Confidence 334555554 33333 34445554 43221 222 2 55665554443 345688887765 678888775443 3
Q ss_pred H---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh-
Q 007917 470 Q---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG- 545 (585)
Q Consensus 470 ~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~- 545 (585)
. .+.+|...++|+++|.-+-....+. . ...+..+|...+.+.+-- +..++.+++++...+++|+.
T Consensus 87 N~~~~v~~A~~~~~Pll~itg~~~~~~~~----~--~~~~Q~~d~~~~~~~~~k-----~~~~v~~~~~~~~~i~~A~~~ 155 (573)
T 2iht_A 87 NLSTGIATSVLDRSPVIALAAQSESHDIF----P--NDTHQCLDSVAIVAPMSK-----YAVELQRPHEITDLVDSAVNA 155 (573)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEESCGGGCC----T--TTSTTCCCHHHHHGGGSS-----EEEECCSGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEcccCcccccC----C--cCccccCCHHHHHHhHhh-----EEEEcCCHHHHHHHHHHHHHH
Confidence 3 8889999999999998776654331 1 012345699999998886 88899999999888888876
Q ss_pred -c-CCCCeEEEEEEcC
Q 007917 546 -E-QKDSLCFIEVFVH 559 (585)
Q Consensus 546 -~-~~~gp~vIeV~v~ 559 (585)
. ...||+.|++..|
T Consensus 156 A~~~~~GPV~l~iP~d 171 (573)
T 2iht_A 156 AMTEPVGPSFISLPVD 171 (573)
T ss_dssp HTBSSCCCEEEEEEHH
T ss_pred HhcCCCceEEEEecch
Confidence 2 2358999999876
No 60
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=93.33 E-value=0.48 Score=51.17 Aligned_cols=114 Identities=13% Similarity=0.133 Sum_probs=81.0
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCch--hH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGS--FQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGs--f~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|.|.+.+. +|+.+|++-=|. .. .+.+|...++|+++|.-+-....+. .+
T Consensus 42 i~~i~~~~E~~---Aa~~A~Gyar~t-g~p~v~~~TsGpG~~N~~~~l~~A~~~~~Pll~itg~~~~~~~~----~~--- 110 (563)
T 2uz1_A 42 VPIIDTRHEAA---AGHAAEGYARAG-AKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGSGALRDDE----TN--- 110 (563)
T ss_dssp CCEEECSSHHH---HHHHHHHHHHHH-TSCEEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTT----SC---
T ss_pred CcEEeeCCHHH---HHHHHHHHHHHh-CCCEEEEEccCccHHHHHHHHHHHHhcCCCEEEEeCCCCcccCC----ch---
Confidence 34554444333 446788888765 678888774443 22 8888999999999998776543321 11
Q ss_pred CCCC-CCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh---cCCCCeEEEEEEcC
Q 007917 505 VIKN-WDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG---EQKDSLCFIEVFVH 559 (585)
Q Consensus 505 ~~~~-~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~---~~~~gp~vIeV~v~ 559 (585)
.+.. +|...+.+.+-- +..++.+++++...+++|+. ....||+.|+|..|
T Consensus 111 ~~Q~~~d~~~~~~~~tk-----~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 111 TLQAGIDQVAMAAPITK-----WAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWD 164 (563)
T ss_dssp CTTCCCCHHHHHGGGCS-----EEEECCCGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred hhhhhccHHHHhhhhhc-----eEEEcCCHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence 1344 789999999876 88999999999888888875 22459999999988
No 61
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=92.95 E-value=0.63 Score=50.82 Aligned_cols=115 Identities=8% Similarity=0.068 Sum_probs=81.3
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCch--hH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGS--FQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGs--f~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|.|.+.+..+++.+|++-=|. .. .|.+|...++|+++|.-+-....+ .. .
T Consensus 66 i~~i~~~~E~~---Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N~~~~l~~A~~~~vPlvvItg~~p~~~~----~~---~ 135 (616)
T 2pan_A 66 IRHILARHVEG---ASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITGQAPRARL----HK---E 135 (616)
T ss_dssp CEEEECSSHHH---HHHHHHHHHHHSTTCCEEEEECSTHHHHTSHHHHHHHHHTTCCEEEEEEECCGGGT----TT---T
T ss_pred CcEEeeCCHHH---HHHHHHHHHHhcCCCceEEEeCCCchHHHHHHHHHHHHhcCCCEEEEecCCccccc----Cc---c
Confidence 34554444332 4457888888754567777664443 33 899999999999999877654322 01 1
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh-c--CCCCeEEEEEEcC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG-E--QKDSLCFIEVFVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~-~--~~~gp~vIeV~v~ 559 (585)
.+...|...+.+.+-- ..+++.+++++...|++|+. . ...||+.|++..|
T Consensus 136 ~~Q~~d~~~~~~~~tk-----~~~~v~~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~d 188 (616)
T 2pan_A 136 DFQAVDIEAIAKPVSK-----MAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFD 188 (616)
T ss_dssp CTTCCCHHHHHGGGSS-----EEEECCSGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred cccccCHHHHHHHHHH-----hhcccCCHHHHHHHHHHHHHHHhcCCCceEEEEcchh
Confidence 2345789999999876 78899999999999998876 1 2368999999875
No 62
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=92.73 E-value=0.88 Score=49.69 Aligned_cols=152 Identities=12% Similarity=0.156 Sum_probs=95.2
Q ss_pred cccHHHHHHHHHHHcC--CCEEEec----CCC-ChHHHHHhhhcCCCCeEEe-cCchhhHHHhhhhhhhhcCc-cEEEEe
Q 007917 26 VGTLGRHLARRLVEIG--AKDVFSV----PGD-FNLTLLDHLIAEPELNLVG-CCNELNAGYAADGYARSRGV-GACVVT 96 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~G--v~~vFg~----PG~-~~~~l~~al~~~~~i~~i~-~~~E~~A~~~A~gyar~tg~-~v~~~t 96 (585)
.++..+++.+.|.+.. -+.|+.+ +++ ....|.+. .++ |++. ...|++++.+|.|+|.. |. .++.+
T Consensus 318 ~~~~~~~~~~~l~~~~~~d~~v~~~~~d~~~~~~~~~~~~~---~~~-r~~~~gIaE~~~~~~a~G~A~~-G~rp~~~~- 391 (621)
T 2o1s_A 318 LPSYSKIFGDWLCETAAKDNKLMAITPAMREGSGMVEFSRK---FPD-RYFDVAIAEQHAVTFAAGLAIG-GYKPIVAI- 391 (621)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHH---CTT-TEEECCSCHHHHHHHHHHHHHT-TCEEEEEE-
T ss_pred hHHHHHHHHHHHHHHHhhCcCEEEEeCcccCCcChHHHHHh---CCC-ceEecCcCHHHHHHHHHHHHHC-CCEEEEEe-
Confidence 3566677666555442 2345544 443 33344432 334 6776 56999999999999987 65 55555
Q ss_pred CCcchHHHHHHH-HHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEE-EEecCcchhHHHHHH
Q 007917 97 FTVGGLSVLNAI-AGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDT 174 (585)
Q Consensus 97 ~GpG~~n~~~gl-~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~l~~ 174 (585)
.++.+.-++.-+ ..+...+.|++++...... .+.+...|+.. .+..+++.+..+. ....+++++..++..
T Consensus 392 ~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~--~g~~G~tH~~~------~d~~~~~~iP~l~v~~P~d~~e~~~~l~~ 463 (621)
T 2o1s_A 392 YSTFLQRAYDQVLHDVAIQKLPVLFAIDRAGI--VGADGQTHQGA------FDLSYLRCIPEMVIMTPSDENECRQMLYT 463 (621)
T ss_dssp ETTGGGGGHHHHHHTTTTTTCCCEEEEESCBC--CCTTCGGGCBC------SHHHHTTTSTTCEEECCSSHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHhcCCCEEEEEECCcc--CCCCCCccCch------HHHHHHhcCCCCEEEecCCHHHHHHHHHH
Confidence 777776666554 4467789998888743322 23222233321 2357777765433 455677888888887
Q ss_pred HHHHhhhcCCcEEEEecCCC
Q 007917 175 AISTALKESKPVYISISCNL 194 (585)
Q Consensus 175 A~~~a~~~~gPV~i~iP~dv 194 (585)
|++.+ ++||+|..|...
T Consensus 464 a~~~~---~~Pv~i~~~r~~ 480 (621)
T 2o1s_A 464 GYHYN---DGPSAVRYPRGN 480 (621)
T ss_dssp HHHCC---SSCEEEECCSSB
T ss_pred HHHcC---CCCEEEEeCCCC
Confidence 77643 799999999754
No 63
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=92.37 E-value=0.61 Score=51.02 Aligned_cols=151 Identities=13% Similarity=0.136 Sum_probs=94.9
Q ss_pred cccHHHHHHHHHHHcCC--CEEEec----CCC-ChHHHHHhhhcCCCCeEEe-cCchhhHHHhhhhhhhhcCc-cEEEEe
Q 007917 26 VGTLGRHLARRLVEIGA--KDVFSV----PGD-FNLTLLDHLIAEPELNLVG-CCNELNAGYAADGYARSRGV-GACVVT 96 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv--~~vFg~----PG~-~~~~l~~al~~~~~i~~i~-~~~E~~A~~~A~gyar~tg~-~v~~~t 96 (585)
.++..+++.+.|.+..- +.|+.+ +++ ....|.+.. ++ |++. ...|++++.+|.|.|.. |. .++.+
T Consensus 321 ~~~~~~~~~~~l~~~~~~d~~v~~i~~d~~~~~~~~~f~~~~---~~-r~~~~gIaE~~~~~~a~G~A~~-G~rp~~~~- 394 (629)
T 2o1x_A 321 AYSWSAAFGEAVTEWAKTDPRTFVVTPAMREGSGLVEFSRVH---PH-RYLDVGIAEEVAVTTAAGMALQ-GMRPVVAI- 394 (629)
T ss_dssp CCBHHHHHHHHHHHHHHHCTTEEEEESSCTTTTTCHHHHHHC---GG-GEEECCSCHHHHHHHHHHHHHT-TCEEEEEE-
T ss_pred hHHHHHHHHHHHHHHhhhCcCEEEEeccccCCcChHHHHHhc---Cc-ceEeccccHHHHHHHHHHHHHc-CCEEEEEe-
Confidence 45666776665554332 345554 443 333444432 33 6776 56999999999999987 65 55554
Q ss_pred CCcchHHHHHHHH-HhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEE-EEecCcchhHHHHHH
Q 007917 97 FTVGGLSVLNAIA-GAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDT 174 (585)
Q Consensus 97 ~GpG~~n~~~gl~-~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~l~~ 174 (585)
..+.+.-++.-+. .+...+.|++++...... .+.+...|+. ..+..+++.+..+. ....++.++..++..
T Consensus 395 ~~~F~~~a~dqi~~~~a~~~~pvv~~~~~~g~--~g~dG~tH~~------~~d~a~~r~iP~l~v~~P~d~~e~~~~~~~ 466 (629)
T 2o1x_A 395 YSTFLQRAYDQVLHDVAIEHLNVTFCIDRAGI--VGADGATHNG------VFDLSFLRSIPGVRIGLPKDAAELRGMLKY 466 (629)
T ss_dssp EHHHHGGGHHHHHHTTTTTTCCCEEEEESBBC--CCTTCTTTCB------CSHHHHTTTSTTCEEECCSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcCCCEEEEEECCcc--CCCCCcccCc------cHHHHHHHccCCcEEEecCCHHHHHHHHHH
Confidence 6777665665544 467789998888743222 2222223322 23467888776544 445677888888888
Q ss_pred HHHHhhhcCCcEEEEecCCC
Q 007917 175 AISTALKESKPVYISISCNL 194 (585)
Q Consensus 175 A~~~a~~~~gPV~i~iP~dv 194 (585)
|++. ++||+|.+|...
T Consensus 467 a~~~----~~Pv~i~~~r~~ 482 (629)
T 2o1x_A 467 AQTH----DGPFAIRYPRGN 482 (629)
T ss_dssp HHHS----SSCEEEECCSSB
T ss_pred HHhC----CCCEEEEecCCC
Confidence 8765 699999999754
No 64
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=92.24 E-value=0.47 Score=51.08 Aligned_cols=114 Identities=10% Similarity=0.033 Sum_probs=77.3
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCc--hhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG--SFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDG--sf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|.|.+.+. +++.+|++==| ... .+.+|...++|+++|.-+-....+. .+
T Consensus 42 i~~i~~~~E~~---Aa~~A~GyAr~t-g~~~v~~~TsGpG~~N~~~gi~~A~~~~vPvl~itg~~~~~~~~----~~--- 110 (549)
T 3eya_A 42 IEWMSTRHEEV---AAFAAGAEAQLS-GELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIG----SG--- 110 (549)
T ss_dssp SEEEECSSHHH---HHHHHHHHHHHH-SSCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEESCGGGTT----SC---
T ss_pred CeEEEeCChHH---HHHHHHHHHHHh-CCCEEEEeCCCCcHhhhHHHHHHHHhhCCCEEEEeCCCchhhcC----CC---
Confidence 44555444332 345678887765 57777776443 333 8889999999999998765432210 11
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--cCCCCeEEEEEEcC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~~~~gp~vIeV~v~ 559 (585)
.+...|...+.+.+-- +..++.+++++...+++|+. ....||+.|+|..|
T Consensus 111 ~~Q~~d~~~~~~~~tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d 162 (549)
T 3eya_A 111 YFQETHPQELFRECSH-----YCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLPGD 162 (549)
T ss_dssp CTTCCCHHHHTSTTCS-----EEEECCSGGGHHHHHHHHHHHHHHTTSEEEEEEEHH
T ss_pred CCCccCHHHHHhhhhh-----eEEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence 1244688888777765 78889999988888888775 23579999999865
No 65
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=92.21 E-value=0.53 Score=51.87 Aligned_cols=170 Identities=12% Similarity=0.048 Sum_probs=100.6
Q ss_pred eEEe-cCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCC
Q 007917 67 NLVG-CCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPD 144 (585)
Q Consensus 67 ~~i~-~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~ 144 (585)
|++. ...|++++.+|.|+|...|. .++ .|..+.+.-+..+|..+...+.|++++....... .|.+..-| |
T Consensus 403 R~id~GIaE~~~v~~a~GlA~~gG~~P~~-~tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~~-~G~dG~tH------q 474 (669)
T 2r8o_A 403 NYIHYGVREFGMTAIANGISLHGGFLPYT-STFLMFVEYARNAVRMAALMKQRQVMVYTHDSIG-LGEDGPTH------Q 474 (669)
T ss_dssp SEEECCSCHHHHHHHHHHHHHHSSCEEEE-EEEGGGGGTTHHHHHHHHHTTCCCEEEEECCSGG-GCTTCTTT------C
T ss_pred CeeecchhHHHHHHHHHHHHHcCCCeEEE-eehHHHHHHHHHHHHHHHhcCCCEEEEEeCCCcC-cCCCCCcc------C
Confidence 6665 55999999999999998676 666 5677777777888888888999988886432222 22222223 2
Q ss_pred hHHHHHHhhhceeE-EEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCCCCCCCCCCCCCCCCCccCCCCCCChhhHHH
Q 007917 145 FTQELRCFQAITCS-QAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEA 223 (585)
Q Consensus 145 ~~d~~~~~~~~~k~-~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (585)
...+..+++.+... .....++.++..+++.|++.. .+||+|.+|.... +. .+ .. .....
T Consensus 475 ~~edla~lr~iP~l~V~~Pad~~E~~~~l~~a~~~~---~~Pv~i~~~r~~~----~~-----~~-------~~-~~~~~ 534 (669)
T 2r8o_A 475 PVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVERQ---DGPTALILSRQNL----AQ-----QE-------RT-EEQLA 534 (669)
T ss_dssp CSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHCS---SSCEEEECCSSEE----CC-----CC-------CC-HHHHH
T ss_pred CHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHHhC---CCcEEEEeCCCCC----CC-----CC-------Cc-cchhh
Confidence 23446777766432 344456666666666665532 6999999886431 10 00 00 00000
Q ss_pred HHHHHHHHHHh--cCCCEEEeCcccchhchHHHHHHHHHHhCCC
Q 007917 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (585)
Q Consensus 224 ~~~~~~~~l~~--a~rpvIi~G~g~~~~~a~~~l~~lae~l~~P 265 (585)
.+..-+..+.. .+.-++|++.|.-...+.++..+|.+. |+.
T Consensus 535 ~~~~G~~vl~~~~g~~dv~iva~G~~v~~al~Aa~~L~~~-Gi~ 577 (669)
T 2r8o_A 535 NIARGGYVLKDCAGQPELIFIATGSEVELAVAAYEKLTAE-GVK 577 (669)
T ss_dssp HGGGSCEEEECCSSSCSEEEEECGGGHHHHHHHHHHHHHH-TCC
T ss_pred hccCCCEEEeccCCCCCEEEEEECHHHHHHHHHHHHHHhc-CCC
Confidence 01000111222 125588888887766677777777665 544
No 66
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=92.21 E-value=0.24 Score=50.38 Aligned_cols=117 Identities=15% Similarity=-0.009 Sum_probs=73.3
Q ss_pred CeEEec-CchhhHHHhhhhhhhhcCccEEEEeCCcchHHHHHHHHH-hhhc--------CCcEEEEeCCCCCccCCCccc
Q 007917 66 LNLVGC-CNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAG-AYSE--------NLPVICIVGGPNSNDYGTNRI 135 (585)
Q Consensus 66 i~~i~~-~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~gl~~-A~~~--------~~Pll~I~g~~~~~~~~~~~~ 135 (585)
-|++.+ ..|++++.+|.|+|....+.++..|.++.+.-++..|.+ +... +.||+++...... .+ +.
T Consensus 98 ~r~~d~gIaE~~~v~~a~G~A~~G~rpv~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~--~g-~g- 173 (369)
T 1ik6_A 98 ERVIDTPLNEGGILGFAMGMAMAGLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSG--TR-GG- 173 (369)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHTTCEEEEECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC---------
T ss_pred CcEEECcccHHHHHHHHHHHHHCCCeeEEEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCC--CC-CC-
Confidence 367754 599999999999998743477666788887667777765 3323 8998876653321 12 21
Q ss_pred eeeccCCCChHHHHHHhhhceeEE-EEecCcchhHHHHHHHHHHhhhcCCcEEEEecCCCCC
Q 007917 136 LHHTIGLPDFTQELRCFQAITCSQ-AVVNNLGDAHELIDTAISTALKESKPVYISISCNLPG 196 (585)
Q Consensus 136 ~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~~ 196 (585)
-||+ ..+ ..+++.+..+. ....+++++..+++.|++ .++||+|..|..+..
T Consensus 174 ~~hs-----~~~-~a~l~~iPnl~V~~Psd~~e~~~ll~~A~~----~~~Pv~i~~p~~l~r 225 (369)
T 1ik6_A 174 LYHS-----NSP-EAIFVHTPGLVVVMPSTPYNAKGLLKAAIR----GDDPVVFLEPKILYR 225 (369)
T ss_dssp -----------H-HHHHHTCTTCEEECCCSHHHHHHHHHHHHH----SSSCEEEEEEGGGSS
T ss_pred cccc-----ccH-HHHHcCCCCcEEEecCCHHHHHHHHHHHHh----CCCCEEEEEehhhhc
Confidence 2222 123 47777775544 445678888888888876 469999999877643
No 67
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=92.04 E-value=1.7 Score=47.88 Aligned_cols=148 Identities=14% Similarity=0.220 Sum_probs=93.0
Q ss_pred HHHHHHHHhhCCCCCEEEecCCccccccc-cccccCCCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchh--H
Q 007917 394 NVLFKHIQDMLSGDTAVIAETGDSWFNCQ-KLRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF--Q 470 (585)
Q Consensus 394 ~~~~~~L~~~l~~~~ii~~d~G~~~~~~~-~~~~~~~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf--~ 470 (585)
..+++.|.+ ..=+. ++.=-|....... .+......+++....-.+ +.-+|.|.+.+. +++.+|++-=|.- .
T Consensus 86 ~~lv~~L~~-~GV~~-vFg~PG~~~~pl~dal~~~~~i~~v~~~hE~~---Aa~aAdGyAr~t-Gkpgvv~~TsGpG~~N 159 (677)
T 1t9b_A 86 QIFNEMMSR-QNVDT-VFGYPGGAILPVYDAIHNSDKFNFVLPKHEQG---AGHMAEGYARAS-GKPGVVLVTSGPGATN 159 (677)
T ss_dssp HHHHHHHHH-TTCCE-EEECCCGGGHHHHHHTTTCSSSEEECCSSHHH---HHHHHHHHHHHH-SSCEEEEECSTHHHHT
T ss_pred HHHHHHHHH-cCCCE-EEEecCccHHHHHHHHHhCCCCeEEEeCChHH---HHHHHHHHHHHH-CCCEEEEECCChHHHH
Confidence 334455544 33343 3444454433221 122222345655554443 345688888775 6777777744433 2
Q ss_pred ---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--
Q 007917 471 ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG-- 545 (585)
Q Consensus 471 ---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~-- 545 (585)
.|.+|...++|+++|.-+-....+. . ..+..+|...+.+.+-- +..++.+++++...+++|+.
T Consensus 160 ~~~gia~A~~d~vPllvItG~~~~~~~g----~---~a~Q~~Dq~~i~~~~tk-----~~~~v~~~~~i~~~i~~A~~~A 227 (677)
T 1t9b_A 160 VVTPMADAFADGIPMVVFTGQVPTSAIG----T---DAFQEADVVGISRSCTK-----WNVMVKSVEELPLRINEAFEIA 227 (677)
T ss_dssp THHHHHHHHHHTCCEEEEEEECCTTTTT----S---CCTTCCCHHHHTGGGSS-----EEEECCSGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCChhhcC----C---CCccccCHHHHhhhhee-----EEEEcCCHHHHHHHHHHHHHHH
Confidence 8899999999999998765543321 1 12345688888888876 78899999999999999886
Q ss_pred c-CCCCeEEEEEEcC
Q 007917 546 E-QKDSLCFIEVFVH 559 (585)
Q Consensus 546 ~-~~~gp~vIeV~v~ 559 (585)
. ...||++|+|..|
T Consensus 228 ~~grpGPV~l~lP~D 242 (677)
T 1t9b_A 228 TSGRPGPVLVDLPKD 242 (677)
T ss_dssp HSSSCCEEEEEEEHH
T ss_pred hhCCCceEEEEcCHH
Confidence 2 2368999999943
No 68
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=91.97 E-value=0.58 Score=50.51 Aligned_cols=116 Identities=11% Similarity=0.049 Sum_probs=80.4
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchh--H---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF--Q---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf--~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|.|.+.+. +++.+|++-=|.- . .+.+|...++|+++|.-+-....+. ...+.
T Consensus 46 i~~i~~~hE~~---Aa~~A~Gyar~t-g~pgv~~~TsGpG~~N~~~gi~~A~~~~vPll~itg~~~~~~~~--~~~~~-- 117 (564)
T 2q28_A 46 IRYIGFRHEQS---AGYAAAASGFLT-QKPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVD--LQQGD-- 117 (564)
T ss_dssp CEEEECSSHHH---HHHHHHHHHHHH-SSCEEEEECSHHHHHHHHHHHHHHHHHTCCEEEEEEECCHHHHH--TTSCC--
T ss_pred CcEEeeCCHHH---HHHHHHHHHHHh-CCCEEEEEccCchHHHHHHHHHHHHhcCCCEEEEeCCCCccccC--CCCCc--
Confidence 44555444333 335678877764 6787777744433 2 8888999999999998876543221 00111
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--cC-CCCeEEEEEEcC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQ-KDSLCFIEVFVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~~-~~gp~vIeV~v~ 559 (585)
+..+|...+.+.+-- +..++.+++++...+++|+. .. ..||+.|+|..|
T Consensus 118 -~Q~~dq~~~~~~~tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 169 (564)
T 2q28_A 118 -YEELDQMNAAKPYAK-----AAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPAN 169 (564)
T ss_dssp -TTCCCHHHHHGGGSS-----EEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred -cccccHHHHHHHhhh-----eeeecCCHHHHHHHHHHHHHHHhcCCCceEEEEcCHH
Confidence 244688899988876 88899999999888888876 22 469999999988
No 69
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=91.91 E-value=0.44 Score=52.34 Aligned_cols=118 Identities=15% Similarity=0.073 Sum_probs=77.2
Q ss_pred CeEEec-CchhhHHHhhhhhhhhcCccEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCC
Q 007917 66 LNLVGC-CNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPD 144 (585)
Q Consensus 66 i~~i~~-~~E~~A~~~A~gyar~tg~~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~ 144 (585)
=|++.+ ..|++++.+|.|+|...|.-.++.|..+...-+..+|..+-..+.|++++....... .+.+...| |
T Consensus 397 ~R~i~~gIaE~~~~~~a~GlA~~Gg~~P~~~t~~~F~~~~~~air~~a~~~lpvv~~~t~~g~g-~G~dG~tH------q 469 (651)
T 2e6k_A 397 GRYLHFGVREHAMGAILNGLNLHGGYRAYGGTFLVFSDYMRPAIRLAALMGVPTVFVFTHDSIA-LGEDGPTH------Q 469 (651)
T ss_dssp CCEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGGGGSHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTT------C
T ss_pred CceEecCcCHHHHHHHHHHHHHcCCCEEEEEeHHHHHHHHHHHHHHHHhcCCCEEEEEECCccc-cCCCcCcc------c
Confidence 367765 599999999999998865534444556666667777888888899998884222221 22222223 2
Q ss_pred hHHHHHHhhhceeE-EEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCC
Q 007917 145 FTQELRCFQAITCS-QAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (585)
Q Consensus 145 ~~d~~~~~~~~~k~-~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~d 193 (585)
...+..+++.+..+ .....++.++..++..|++.. .+||+|.+|..
T Consensus 470 ~~edla~lr~iP~l~V~~Pad~~E~~~~l~~A~~~~---~~Pv~i~~~r~ 516 (651)
T 2e6k_A 470 PVEHLMSLRAMPNLFVIRPADAYETFYAWLVALRRK---EGPTALVLTRQ 516 (651)
T ss_dssp CSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHHCC---SSCEEEECCSS
T ss_pred cHHHHHHhcCCCCcEEEecCCHHHHHHHHHHHHHcC---CCCEEEEEeCC
Confidence 33456777776443 344556777777777666532 69999999865
No 70
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=91.86 E-value=0.87 Score=49.43 Aligned_cols=114 Identities=7% Similarity=-0.001 Sum_probs=80.2
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH-----hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ-----EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~-----eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-. .+.-+|.|.+.+. +|+.+|++-=|.-. .+.+|...++|+++|.-+-....+. . .
T Consensus 44 i~~i~~~~E~---~Aa~~A~GyAr~t-gk~~v~~~tsGpG~~N~~~gl~~A~~~~vPll~Itg~~p~~~~g----~---~ 112 (590)
T 1v5e_A 44 VKFLQVKHEE---VGAMAAVMQSKFG-GNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILGSRPQRELN----M---D 112 (590)
T ss_dssp CEEEECSSHH---HHHHHHHHHHHTT-CCCCEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGTT----T---T
T ss_pred CeEEeeCCHH---HHHHHHHHHHHHH-CCCEEEEeCcChHHHHHHHHHHHHHhcCCCEEEEcCCCCcccCC----C---C
Confidence 4455544433 2456788888764 67777777555433 8888999999999998876543320 1 1
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh---cCCCCeEEEEEEcCC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG---EQKDSLCFIEVFVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~---~~~~gp~vIeV~v~~ 560 (585)
.+...|...+.+.+-- +.+++.+++++...+++|+. ....||+.| +..|-
T Consensus 113 ~~Q~~d~~~~~~~~tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l-iP~dv 165 (590)
T 1v5e_A 113 AFQELNQNPMYDHIAV-----YNRRVAYAEQLPKLVDEAARMAIAKRGVAVLE-VPGDF 165 (590)
T ss_dssp CTTCCCCHHHHHTTCS-----EEEECCSGGGHHHHHHHHHHHHHHTTSEEEEE-EETTG
T ss_pred cccccCHHHHHHhhcc-----EEEEeCCHHHHHHHHHHHHHHHhcCCCceEEE-Eccch
Confidence 1244688899998876 78899999998888888875 223489999 98874
No 71
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=91.75 E-value=0.65 Score=50.61 Aligned_cols=116 Identities=13% Similarity=0.022 Sum_probs=77.9
Q ss_pred eEE-ecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCC
Q 007917 67 NLV-GCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPD 144 (585)
Q Consensus 67 ~~i-~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~ 144 (585)
|++ ...-|++++.+|.|.|...|. .++.+ ..+-+.-+...|..+...+.||+++....... .|.+..-||.
T Consensus 383 R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~~-f~~F~~~~~~~ir~~a~~~~pv~~~~t~~g~g-~G~dG~THq~----- 455 (632)
T 3l84_A 383 KNIHFGIREHAMAAINNAFARYGIFLPFSAT-FFIFSEYLKPAARIAALMKIKHFFIFTHDSIG-VGEDGPTHQP----- 455 (632)
T ss_dssp SEEECCSCHHHHHHHHHHHHHHSSCEEEEEE-EGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG-GCTTCGGGSC-----
T ss_pred CeEEeCccHHHHHHHHHHHHHcCCCEEEEEe-cHHHHHHHHHHHHHHhccCCCEEEEEECCCcC-CCCCCCCCCC-----
Confidence 444 567999999999999998676 65554 56666667788877778899998885322221 2322233332
Q ss_pred hHHHHHHhhhceeEE-EEecCcchhHHHHHHHHHHhhhcCCcEEEEecCCC
Q 007917 145 FTQELRCFQAITCSQ-AVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194 (585)
Q Consensus 145 ~~d~~~~~~~~~k~~-~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (585)
..+..+++.+.-.. ....++.++..+++.|++ .++||+|.+|..-
T Consensus 456 -~ed~a~lr~iP~l~V~~P~d~~e~~~~l~~A~~----~~~Pv~ir~~r~~ 501 (632)
T 3l84_A 456 -IEQLSTFRAMPNFLTFRPADGVENVKAWQIALN----ADIPSAFVLSRQK 501 (632)
T ss_dssp -SSHHHHHHHSSSCEEECCSSHHHHHHHHHHHHH----CSSCEEEECCSSC
T ss_pred -HhHHHHHhcCCCCEEEecCCHHHHHHHHHHHHh----CCCCEEEEEcCCC
Confidence 23468888876533 344566677777776665 5799999998653
No 72
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=91.57 E-value=0.96 Score=49.63 Aligned_cols=115 Identities=16% Similarity=0.122 Sum_probs=74.5
Q ss_pred eEEe-cCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCC
Q 007917 67 NLVG-CCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPD 144 (585)
Q Consensus 67 ~~i~-~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~ 144 (585)
|++. ..-|++++.+|.|+|...|. .++. |..+-+.-+...+..+...+.||+++....... .|.+..-||
T Consensus 404 R~~d~GIaE~~~v~~a~GlA~~gG~~P~~~-tf~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g-~G~dG~THq------ 475 (663)
T 3kom_A 404 NYLSYGVREFGMAAIMNGLSLYGGIKPYGG-TFLVFSDYSRNAIRMSALMKQPVVHVMSHDSIG-LGEDGPTHQ------ 475 (663)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGHHHHHHHHHHHHHTTCCCEEEEECCSGG-GCTTCTTTC------
T ss_pred CeEecCccHHHHHHHHHHHHHcCCCEEEEE-ehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccc-cCCCCCCcC------
Confidence 6665 48999999999999988676 6555 467777667788877778999998885322221 222222232
Q ss_pred hHHHHHHhhhceeEE-EEecCcchhHHHHHHHHHHhhh-cCCcEEEEecCC
Q 007917 145 FTQELRCFQAITCSQ-AVVNNLGDAHELIDTAISTALK-ESKPVYISISCN 193 (585)
Q Consensus 145 ~~d~~~~~~~~~k~~-~~v~~~~~~~~~l~~A~~~a~~-~~gPV~i~iP~d 193 (585)
...+..+++.+.-.. ....++.++..++ +.|.. .++||+|.+|..
T Consensus 476 ~~ed~a~lr~iPnl~V~~Pad~~e~~~~l----~~A~~~~~~Pv~ir~~r~ 522 (663)
T 3kom_A 476 PIEHVPSLRLIPNLSVWRPADTIETMIAW----KEAVKSKDTPSVMVLTRQ 522 (663)
T ss_dssp CSSHHHHHHTSTTCEEECCCSHHHHHHHH----HHHHHCSSCCEEEECCSS
T ss_pred CHHHHHHHhcCCCcEEEeeCCHHHHHHHH----HHHHHhCCCCEEEEccCc
Confidence 233467788775533 3334555554444 44555 479999998853
No 73
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=91.48 E-value=0.61 Score=50.38 Aligned_cols=116 Identities=6% Similarity=-0.012 Sum_probs=79.8
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchh--H---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF--Q---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf--~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|.|.+.+. +++.+|++-=|.- . .+.+|...++|+++|.-+-....+.. ..+.
T Consensus 48 i~~i~~~~E~~---Aa~~A~GyAr~t-g~pgv~~~TsGpG~~N~~~~i~~A~~~~vPll~itg~~~~~~~~~--~~~~-- 119 (568)
T 2c31_A 48 QRFYSFRHEQH---AGYAASIAGYIE-GKPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGSSEREIVDL--QQGD-- 119 (568)
T ss_dssp CEEEECSSHHH---HHHHHHHHHHHH-SSCEEEEECSHHHHHHHHHHHHHHHHHTCCEEEEEEECCHHHHHT--TCCC--
T ss_pred CcEEEeCcHHH---HHHHHHHHHHHh-CCCEEEEEcCCccHHHHHHHHHHHHhcCCCEEEEccCCCccccCC--CCCc--
Confidence 44555444433 335678877764 6777777744433 2 88889999999999988765432210 0111
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--cC-CCCeEEEEEEcC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQ-KDSLCFIEVFVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~~-~~gp~vIeV~v~ 559 (585)
+..+|...+.+.+-- +..++.+++++...+++|+. .. ..||+.|+|..|
T Consensus 120 -~Q~~dq~~~~~~~tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 171 (568)
T 2c31_A 120 -YEEMDQMNVARPHCK-----ASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAK 171 (568)
T ss_dssp -TTCCCHHHHSGGGSS-----EEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEETH
T ss_pred -ccccCHHHHHHhhhh-----eeeecCCHHHHHHHHHHHHHHhcCCCCceEEEeCCHH
Confidence 244688888888876 78899999999888888876 22 568999999988
No 74
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=91.43 E-value=0.38 Score=52.41 Aligned_cols=115 Identities=8% Similarity=0.053 Sum_probs=77.1
Q ss_pred CCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCc--hhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCC
Q 007917 429 NCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDG--SFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPY 503 (585)
Q Consensus 429 ~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDG--sf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~ 503 (585)
+.+++....-.+ +.-+|.|.+.+. +++.+|++==| ... .+.+|...++|+++|.-+-....+. .
T Consensus 50 ~i~~i~~~hE~~---Aa~aA~GyAr~t-g~~gv~~~TsGpG~~N~~~gia~A~~~~vPvl~itG~~~~~~~~----~--- 118 (603)
T 4feg_A 50 RIHYIQVRHEEV---GAMAAAADAKLT-GKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIGQFGTTGMN----M--- 118 (603)
T ss_dssp TSEEEECSSHHH---HHHHHHHHHHHH-SSCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEECCTTTTT----S---
T ss_pred CCeEEEecChHH---HHHHHHHHHHHh-CCceEEEecCCchHHHHHHHHHHHHHcCCCEEEEecCCcccccC----C---
Confidence 345665544433 345678887765 57777776433 333 8899999999999998764432220 1
Q ss_pred CCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--cCCCCeEEEEEEcC
Q 007917 504 NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVH 559 (585)
Q Consensus 504 ~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~~~~gp~vIeV~v~ 559 (585)
..+...|...+.+.+-. +..++.+++++...+++|+. ....||+.|+|..|
T Consensus 119 ~~~Q~~d~~~~~~~~tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d 171 (603)
T 4feg_A 119 DTFQEMNENPIYADVAD-----YNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVD 171 (603)
T ss_dssp CCTTCCCCGGGGTTTCS-----EEEECCCSTTHHHHHHHHHHHHHHHTSEEEEEEETT
T ss_pred CccccccHHHHhhhhce-----EEEEcCCHHHHHHHHHHHHHHHhcCCCCEEEEeChh
Confidence 11234577777777765 78889998888777777765 22579999999876
No 75
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=91.36 E-value=0.6 Score=50.43 Aligned_cols=106 Identities=10% Similarity=0.047 Sum_probs=69.3
Q ss_pred hHHHHHHHhhhcCCCcEEEEEcCchh--H---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCC--CCCCCCC-HHHHH
Q 007917 444 SVGATLGYAQAAKDKRVIACIGDGSF--Q---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPY--NVIKNWD-YTGLV 515 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v~GDGsf--~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~--~~~~~~d-~~~la 515 (585)
+.-+|.|.+.+. +|+.+|++-=|.- . .+.+|...++|+++|.-+-....+. .+.+ .....+| ...+.
T Consensus 71 Aa~~A~GyAr~t-gkp~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~~----~~~~~~~~~q~~d~q~~~~ 145 (565)
T 2nxw_A 71 VGFAADAAARYS-STLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGAPGTTEGN----AGLLLHHQGRTLDTQFQVF 145 (565)
T ss_dssp HHHHHHHHHHHH-TSCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEECCTTCC------CCCC-------CHHHHHH
T ss_pred HHHHHHHHHHHh-CCCeEEEECCCCCHHHHHHHHHHHHhhCCCEEEEeCCCChhhhc----cCcceeeeccchhhHHHHH
Confidence 335688887765 5787777744433 2 8888999999999998875433221 0111 1112355 67777
Q ss_pred HHhcCCCCCccEEEecCHHHHHHHHHHhhh--cCCCCeEEEEEEcC
Q 007917 516 NAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVH 559 (585)
Q Consensus 516 ~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~~~~gp~vIeV~v~ 559 (585)
+.+-- +..++.+++++...+++|+. ....||+.|+|..|
T Consensus 146 ~~~~k-----~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~D 186 (565)
T 2nxw_A 146 KEITV-----AQARLDDPAKAPAEIARVLGAARAQSRPVYLEIPRN 186 (565)
T ss_dssp TTSCS-----CEEECCCTTTHHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred Hhhhe-----EEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEECChh
Confidence 77765 78889988888777777764 22469999999955
No 76
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=91.27 E-value=0.49 Score=51.42 Aligned_cols=103 Identities=14% Similarity=0.165 Sum_probs=69.6
Q ss_pred hHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHh
Q 007917 444 SVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAI 518 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 518 (585)
+.-+|.|.+.+. +++.+|++ |=|... .+.+|...++|+++|.-+-....+. .+. .+...|... .+.+
T Consensus 55 Aa~~A~GyAr~t-g~p~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~~~~~~~~----~~~--~~Q~~d~~~-~~~~ 126 (589)
T 2pgn_A 55 GAWMVNGYNYVK-DRSAAVGAWHCVGNLLLHAAMQEARTGRIPAVHIGLNSDGRLAG----RSE--AAQQVPWQS-FTPI 126 (589)
T ss_dssp HHHHHHHHHHHH-TSCCEEEEEEGGGGGGCHHHHHHHHHTTCCEEEEEEESCGGGTT----CTT--CSSCCCGGG-GTTT
T ss_pred HHHHHHHHHHHH-CCCEEEEEecCchHHHHHHHHHHHHhcCCCEEEEecCCcccccC----CCC--cccccChhh-cccc
Confidence 345688887765 56655555 555454 9999999999999998776543321 110 123456555 4444
Q ss_pred cCCCCCccEEEecCHHHHHHHHHHhhh--c-CCCCeEEEEEEcC
Q 007917 519 HNGEGKCWTAKVRSEDELTEAMKTATG--E-QKDSLCFIEVFVH 559 (585)
Q Consensus 519 G~~~~~~~~~~v~~~~eL~~al~~a~~--~-~~~gp~vIeV~v~ 559 (585)
-- +..++.+++++...+++|+. . ...||+.|+|..|
T Consensus 127 tk-----~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d 165 (589)
T 2pgn_A 127 AR-----STQRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFD 165 (589)
T ss_dssp SS-----EEEECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEETH
T ss_pred EE-----EEeecCCHHHHHHHHHHHHHHHhcCCCccEEEEeCHh
Confidence 43 67889999999888888875 2 2348999999876
No 77
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=91.16 E-value=0.12 Score=45.04 Aligned_cols=83 Identities=24% Similarity=0.258 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhC---CCeEEccC-CccCCCC---------CCCCceeeecCCC
Q 007917 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG---YPIAIMPS-GKGLVPE---------HHPHFIGTYWGAV 291 (585)
Q Consensus 225 ~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~---~Pv~~t~~-gkg~~~~---------~hp~~~G~~~g~~ 291 (585)
.++++++|..|++.+|+-|+|..-+++.-.+.+|++.|. +-|---.. --|.+|. +-|+ .-.+
T Consensus 13 ~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhmNVLLAEA~VPY-----d~v~ 87 (180)
T 1pno_A 13 AEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPGHMNVLLAEANVPY-----DEVF 87 (180)
T ss_dssp HHHHHHHHHTCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCTTSTTHHHHHHHHTTCCG-----GGEE
T ss_pred HHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceEEEEeeCCCH-----HHHh
Confidence 467889999999999999999988888777777777653 32221100 0011221 0011 0011
Q ss_pred CCHHHHHHhhhCCEEEEeCCc
Q 007917 292 SSSFCGEIVESADAYVFVGPI 312 (585)
Q Consensus 292 ~~~~~~~~l~~aD~vl~lG~~ 312 (585)
--+..+.-+.+.|++|+||..
T Consensus 88 EMdeIN~df~~tDv~lVIGAN 108 (180)
T 1pno_A 88 ELEEINSSFQTADVAFVIGAN 108 (180)
T ss_dssp EHHHHGGGGGGCSEEEEESCC
T ss_pred hHHHHhhhhhhcCEEEEeccc
Confidence 123566677899999999975
No 78
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=91.04 E-value=0.63 Score=50.71 Aligned_cols=115 Identities=14% Similarity=0.110 Sum_probs=76.8
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchh--H---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF--Q---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf--~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|.|.+.+. +|+.+|++-=|.- . .+.+|...++|+++|.-+-....+. .+.
T Consensus 70 i~~i~~~hE~~---Aa~aA~GyAr~t-gkpgv~~~TsGpG~~N~~~gia~A~~~~vPlv~ItG~~~~~~~g----~~~-- 139 (604)
T 2x7j_A 70 ISVHVQIDERS---AGFFALGLAKAK-QRPVLLICTSGTAAANFYPAVVEAHYSRVPIIVLTADRPHELRE----VGA-- 139 (604)
T ss_dssp CEEEECSSHHH---HHHHHHHHHHHH-TSCEEEEECSSHHHHTTHHHHHHHHHHTCCEEEEEEECCGGGSS----SCC--
T ss_pred ceEEEecChHH---HHHHHHHHHHhh-CCCEEEEECChhHHHHHHHHHHHHhhcCCCEEEEeCCCCHHHhC----CCC--
Confidence 34554443332 335688887765 6788887754443 3 8889999999999998775543221 111
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHH-------HHHHHHHhhh--cC-CCCeEEEEEEcCC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDE-------LTEAMKTATG--EQ-KDSLCFIEVFVHK 560 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~e-------L~~al~~a~~--~~-~~gp~vIeV~v~~ 560 (585)
+...|...+.+.+-- +.+++.++++ +...+++|+. .. ..||+.|+|..|-
T Consensus 140 -~Q~~d~~~~~~~~tk-----~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d~ 199 (604)
T 2x7j_A 140 -PQAINQHFLFGNFVK-----FFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLRE 199 (604)
T ss_dssp -TTCCCCTTTTGGGSS-----CEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECCS
T ss_pred -CCcCcHHHHhhhhee-----eeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccCc
Confidence 234577777777765 7888888776 7777777765 22 5699999999884
No 79
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=90.89 E-value=0.086 Score=46.04 Aligned_cols=88 Identities=16% Similarity=0.181 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhC---CCeEEccC-CccCCCCCCCCc---eee-ecCCCCCHHH
Q 007917 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG---YPIAIMPS-GKGLVPEHHPHF---IGT-YWGAVSSSFC 296 (585)
Q Consensus 225 ~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~---~Pv~~t~~-gkg~~~~~hp~~---~G~-~~g~~~~~~~ 296 (585)
.++++++|..|++.+|+-|+|..-+++.-.+.+|++.|. +-|---.. --|.+|.+-... .++ |+-.+--+..
T Consensus 12 ~~~~a~~l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd~v~EMdeI 91 (184)
T 1d4o_A 12 LDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHPVAGRMPGQLNVLLAEAGVPYDIVLEMDEI 91 (184)
T ss_dssp HHHHHHHHHHCSEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEEECTTCSSSTTHHHHHHHHHTCCGGGEEEHHHH
T ss_pred HHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceEEEEEecCCHHHHHhHHHH
Confidence 457889999999999999999988888777777777653 32221100 001122100000 000 0011112356
Q ss_pred HHHhhhCCEEEEeCCc
Q 007917 297 GEIVESADAYVFVGPI 312 (585)
Q Consensus 297 ~~~l~~aD~vl~lG~~ 312 (585)
+.-+.+.|++|+||..
T Consensus 92 N~df~~tDv~lVIGAN 107 (184)
T 1d4o_A 92 NHDFPDTDLVLVIGAN 107 (184)
T ss_dssp GGGGGGCSEEEEESCS
T ss_pred hhhhhhcCEEEEecCC
Confidence 6677899999999975
No 80
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=90.44 E-value=0.14 Score=45.69 Aligned_cols=87 Identities=16% Similarity=0.184 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhC---CCeEEccC-CccCCCCCCCCce---ee-ecCCCCCHHHH
Q 007917 226 EATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG---YPIAIMPS-GKGLVPEHHPHFI---GT-YWGAVSSSFCG 297 (585)
Q Consensus 226 ~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~---~Pv~~t~~-gkg~~~~~hp~~~---G~-~~g~~~~~~~~ 297 (585)
++++++|..|++.+|+-|+|..-+++.-.+.+|++.|. +-|---.. =-|..|.+-...+ ++ |+-.+--+..+
T Consensus 36 ~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd~v~EMdeIN 115 (207)
T 1djl_A 36 DNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHPVAGRMPGQLNVLLAEAGVPYDIVLEMDEIN 115 (207)
T ss_dssp HHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCSSSTTHHHHHHHHTTCCGGGEEEHHHHG
T ss_pred HHHHHHHHhCCeEEEECCchHHHHHHhHHHHHHHHHHHHCCCeEEEEeCccCCCCCCCCcEEEEEeCCCHHHHhhHHHHh
Confidence 57889999999999999999988888777777777653 33221110 0011221000000 00 00111123566
Q ss_pred HHhhhCCEEEEeCCc
Q 007917 298 EIVESADAYVFVGPI 312 (585)
Q Consensus 298 ~~l~~aD~vl~lG~~ 312 (585)
.-+.+.|++|+||..
T Consensus 116 ~df~~tDv~lVIGAN 130 (207)
T 1djl_A 116 HDFPDTDLVLVIGAN 130 (207)
T ss_dssp GGGGGCSEEEEESCC
T ss_pred hhhhhcCEEEEeccc
Confidence 677899999999975
No 81
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=90.28 E-value=0.92 Score=48.92 Aligned_cols=117 Identities=7% Similarity=0.033 Sum_probs=76.5
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCC--
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGP-- 502 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~-- 502 (585)
.+++....-.+ +.-+|.|.+.+.. +.+|++ |=|... .+.+|...++|+++|.-+-....+. .+.
T Consensus 42 i~~v~~~~E~~---Aa~~A~Gyar~tg--~~v~~~TsGpG~~N~~~gia~A~~~~vPll~itg~~~~~~~~----~~~~~ 112 (566)
T 2vbi_A 42 MKQIYCCNELN---CGFSAEGYARSNG--AAAAVVTFSVGAISAMNALGGAYAENLPVILISGAPNSNDQG----TGHIL 112 (566)
T ss_dssp SEEEECSSHHH---HHHHHHHHHHHHS--CEEEEECTTTTHHHHHHHHHHHHHTTCCEEEEEEECCGGGTT----TTCBC
T ss_pred CeEEeeCcHHH---HHHHHHHHHhhcC--CeEEEEeCCCCHHHHHHHHHHHHhhCCCEEEEECCCChHHhc----cCcee
Confidence 44555444332 4467888887764 666666 444443 8888999999999999876654331 010
Q ss_pred CCCC---CCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007917 503 YNVI---KNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVHK 560 (585)
Q Consensus 503 ~~~~---~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~~~~gp~vIeV~v~~ 560 (585)
...+ ...|...+.+.+-- +..++.+++++...+++|+. ....||+.|+|..|-
T Consensus 113 ~~~~g~~~~~d~~~~~~~~tk-----~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d~ 170 (566)
T 2vbi_A 113 HHTIGKTDYSYQLEMARQVTC-----AAESITDAHSAPAKIDHVIRTALRERKPAYLDIACNI 170 (566)
T ss_dssp TTSCSSSCCTHHHHHHHTTCS-----EEEEECSSSSHHHHHHHHHHHHHHHTCCEEEEEETTT
T ss_pred eeeccCcchHHHHHHHhhhEe-----EEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhh
Confidence 0111 11367888888865 78889988877777776664 123599999999874
No 82
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=90.16 E-value=0.14 Score=45.70 Aligned_cols=79 Identities=25% Similarity=0.265 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhC---CCeEEccCCccCCCCCCCCceee--------------e
Q 007917 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATG---YPIAIMPSGKGLVPEHHPHFIGT--------------Y 287 (585)
Q Consensus 225 ~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~---~Pv~~t~~gkg~~~~~hp~~~G~--------------~ 287 (585)
.++++++|..|++.+|+-|+|..-+++.-.+.+|++.|. +-|-- .-||..-.+ |
T Consensus 36 ~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~f---------aIHPVAGRMPGhMNVLLAEA~VPY 106 (203)
T 2fsv_C 36 AEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSY---------AIHPVAGRMPGHMNVLLAEANVPY 106 (203)
T ss_dssp HHHHHHHHHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEE---------EECTTCSSSTTHHHHHHHHTTCCG
T ss_pred HHHHHHHHHhCCcEEEEcCchHhHHHHHHHHHHHHHHHHHcCCeEEE---------EecccccCCCCCccEEEEEecCCH
Confidence 357889999999999999999988888777777777653 32221 123321100 0
Q ss_pred cCCCCCHHHHHHhhhCCEEEEeCCc
Q 007917 288 WGAVSSSFCGEIVESADAYVFVGPI 312 (585)
Q Consensus 288 ~g~~~~~~~~~~l~~aD~vl~lG~~ 312 (585)
.-.+--+..+.-+.+.|++|+||..
T Consensus 107 d~v~EMdeIN~df~~tDv~lVIGAN 131 (203)
T 2fsv_C 107 DEVFELEEINSSFQTADVAFVIGAN 131 (203)
T ss_dssp GGEEEHHHHGGGSTTCSEEEEESCC
T ss_pred HHHhhHHHHhhhhhhcCEEEEeccc
Confidence 0011113566667799999999975
No 83
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=90.00 E-value=0.56 Score=50.15 Aligned_cols=115 Identities=20% Similarity=0.220 Sum_probs=77.3
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|.|.+.+. +++.+|++ |=|... .|.+|...++|+++|.-+-....+. .+.
T Consensus 39 i~~i~~~~E~~---Aa~~A~Gyar~t-g~~~v~~~tsGpG~~N~~~~l~~A~~~~~Pll~itg~~~~~~~~----~~~-- 108 (528)
T 1q6z_A 39 FRYILALQEAC---VVGIADGYAQAS-RKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQQTRAMIG----VEA-- 108 (528)
T ss_dssp CEEEECSSHHH---HHHHHHHHHHHH-TSCEEEEEEHHHHHHHTHHHHHHHHHTTCCEEEEEEECCHHHHT----TTC--
T ss_pred CcEEEECcHHH---HHHHHHHHHHHh-CCCEEEEEcCChHHHHHHHHHHHHhhcCCCEEEEeCCCcccccC----CCc--
Confidence 45555554433 446788888875 56777655 344433 8889999999999998765543321 111
Q ss_pred CCCC-CCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh---cCCCCeEEEEEEcCC
Q 007917 505 VIKN-WDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG---EQKDSLCFIEVFVHK 560 (585)
Q Consensus 505 ~~~~-~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~---~~~~gp~vIeV~v~~ 560 (585)
+.. +|...+.+.+-- +..++.+++++...+++|+. ....||+.|+|..|-
T Consensus 109 -~q~~~d~~~~~~~~~k-----~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d~ 162 (528)
T 1q6z_A 109 -LLTNVDAANLPRPLVK-----WSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDD 162 (528)
T ss_dssp -TTCCTTGGGSSTTSCS-----CEECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGG
T ss_pred -ccccccHHHHHHHhhH-----hhhcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 122 477777766654 67888888888888888775 234589999999884
No 84
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=89.93 E-value=0.72 Score=50.81 Aligned_cols=116 Identities=14% Similarity=0.078 Sum_probs=76.0
Q ss_pred eEEe-cCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCC
Q 007917 67 NLVG-CCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPD 144 (585)
Q Consensus 67 ~~i~-~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~ 144 (585)
|++. ...|++++.+|.|+|...|. .++.+ ..+-..-+..+|..+-..+.|++++....... .+.+..-| |
T Consensus 403 R~id~GIaE~~~~~~a~GlA~~GG~~P~~~~-~~~F~~~~~~~ir~~a~~~~pvv~~~t~~g~g-~G~dG~tH------q 474 (673)
T 1r9j_A 403 RYIRFGVREHAMCAILNGLDAHDGIIPFGGT-FLNFIGYALGAVRLAAISHHRVIYVATHDSIG-VGEDGPTH------Q 474 (673)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHSSCEEEEEE-EGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTT------C
T ss_pred CeEecCccHHHHHHHHHHHHhcCCCEEEEEe-hHHHHHHHHHHHHHHHhcCCCEEEEEECCccC-cCCCCccc------C
Confidence 5664 68999999999999988665 65554 56666667788888888999988875322211 22222223 2
Q ss_pred hHHHHHHhhhcee-EEEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCC
Q 007917 145 FTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (585)
Q Consensus 145 ~~d~~~~~~~~~k-~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~d 193 (585)
...+..+++.+.. ..+...++.++..+++.|++.. .+||+|.+|..
T Consensus 475 ~~edla~lr~iP~l~V~~Pad~~e~~~~l~~a~~~~---~~Pv~i~~~r~ 521 (673)
T 1r9j_A 475 PVELVAALRAMPNLQVIRPSDQTETSGAWAVALSSI---HTPTVLCLSRQ 521 (673)
T ss_dssp CSSHHHHHHHSTTCEEECCSSHHHHHHHHHHHHHCT---TCCEEEECCSS
T ss_pred CHHHHHHHcCCCCCEEEeCCCHHHHHHHHHHHHHhC---CCeEEEEEcCC
Confidence 3345677776543 2344556666666666666532 69999998854
No 85
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=89.71 E-value=0.89 Score=48.94 Aligned_cols=103 Identities=14% Similarity=0.132 Sum_probs=70.5
Q ss_pred hHHHHHHHhhhcCCCcEEEEEcCc--hhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHh
Q 007917 444 SVGATLGYAQAAKDKRVIACIGDG--SFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAI 518 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v~GDG--sf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~ 518 (585)
+.-+|.|.+.+. +++.+|++-=| ... .+.+|...++|+++|.-+-....+. .+. +..+|...+.+.+
T Consensus 58 Aa~~AdGyAr~t-G~pgv~~~TsGpG~~N~~~gia~A~~d~vPll~itG~~~~~~~g----~~~---~Q~~d~~~~~~~~ 129 (556)
T 3hww_A 58 LGHLALGLAKVS-KQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELID----CGA---NQAIRQPGMFASH 129 (556)
T ss_dssp HHHHHHHHHHHH-CSCEEEEECSSHHHHTTHHHHHHHHHHCCCEEEEEEECCGGGSS----SSC---TTCCCCTTTTTTC
T ss_pred HHHHHHHHHHhh-CCCEEEEECCCcHHHhhhHHHHHHHHhCCCeEEEeCCCCHHHhc----cCC---CccccHHHHHhhh
Confidence 335678887765 67888776444 333 8899999999999998765543321 111 2345666666666
Q ss_pred cCCCCCccEEEecCHH------HHHHHHHHhhhcCCCCeEEEEEEcC
Q 007917 519 HNGEGKCWTAKVRSED------ELTEAMKTATGEQKDSLCFIEVFVH 559 (585)
Q Consensus 519 G~~~~~~~~~~v~~~~------eL~~al~~a~~~~~~gp~vIeV~v~ 559 (585)
-- +.+++.+++ ++..++++|+.....||+.|+|..|
T Consensus 130 tk-----~~~~v~~~~~~~~~~~i~~~i~~A~~~~r~GPV~i~iP~d 171 (556)
T 3hww_A 130 PT-----HSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHINCPFA 171 (556)
T ss_dssp SS-----EEEECCCCCTTSCHHHHHHHHHHHHHSCCSSCEEEEEECC
T ss_pred ee-----EEEecCCCcccccHHHHHHHHHHHHhcCCCCCEEEeCCcC
Confidence 54 677777665 4899999998522458999999986
No 86
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=89.69 E-value=0.076 Score=46.38 Aligned_cols=84 Identities=20% Similarity=0.267 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHh---CCCeEEccC-CccCCCCC---------CCCceeeecCC
Q 007917 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADAT---GYPIAIMPS-GKGLVPEH---------HPHFIGTYWGA 290 (585)
Q Consensus 224 ~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l---~~Pv~~t~~-gkg~~~~~---------hp~~~G~~~g~ 290 (585)
..++++++|..|++.+|+-|+|..-+.+.-.+.+|++.| |+-|---.. --|.+|.. -|+- -.
T Consensus 19 ~~~~~a~~l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd-----~v 93 (186)
T 2bru_C 19 TAEETAELLKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYD-----IV 93 (186)
T ss_dssp -CHHHHHHHHHCSEEEEECSBHHHHTTTHHHHHHHHHHHHHHCCEEEEEECSSSSSSSSTHHHHHHHHTCCTT-----TE
T ss_pred CHHHHHHHHHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceEEEEecCCCHH-----HH
Confidence 356889999999999999999998888877777777655 333321110 00112210 1110 00
Q ss_pred CCCHHHHHHhhhCCEEEEeCCc
Q 007917 291 VSSSFCGEIVESADAYVFVGPI 312 (585)
Q Consensus 291 ~~~~~~~~~l~~aD~vl~lG~~ 312 (585)
+--+..+.-+.+.|++|+||..
T Consensus 94 ~EMdeIN~df~~tDv~lVIGAN 115 (186)
T 2bru_C 94 LEMDEINDDFADTDTVLVIGAN 115 (186)
T ss_dssp EESCCCHHHHHHCSEEEECBCG
T ss_pred hhHHHHhcccccCCEEEEeccc
Confidence 1112456677899999999975
No 87
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=89.39 E-value=0.7 Score=49.85 Aligned_cols=120 Identities=10% Similarity=-0.018 Sum_probs=72.2
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeee--eeecCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIE--VEIHDGP 502 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~--~~~~~~~ 502 (585)
.+++....-.+ +.-+|.|.+.+. + +.+|++ |=|... .+.+|...++|+++|.-+-...... ..+|...
T Consensus 43 i~~v~~~~E~~---Aa~~A~Gyar~t-g-~~v~~~TsGpG~~N~~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~ 117 (563)
T 2vk8_A 43 MRWAGNANELN---AAYAADGYARIK-G-MSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTL 117 (563)
T ss_dssp CEECCCSSHHH---HHHHHHHHHHHH-S-CEEEEEETTHHHHHHHHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSC
T ss_pred ceEEccCchHH---HHHHHHHHHHhh-C-CcEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEECCCChHHhhccccccccc
Confidence 44554444333 445688887776 3 555555 444433 8899999999999999875543321 0111000
Q ss_pred CCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007917 503 YNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVHK 560 (585)
Q Consensus 503 ~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~~~~gp~vIeV~v~~ 560 (585)
...-.. |+.++.+.+-- +..++.+++++...+++|+. ....||+.|+|..|-
T Consensus 118 g~~~~q-~~~~~~~~~~k-----~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d~ 171 (563)
T 2vk8_A 118 GNGDFT-VFHRMSANISE-----TTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANL 171 (563)
T ss_dssp SSSCSS-HHHHHHHTTCS-----EEEECCCTTTHHHHHHHHHHHHHHHTSCEEEEEETTG
T ss_pred CCcchH-HHHHHhhhhEE-----EEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhh
Confidence 110011 56777777765 78889887766666655553 113599999999873
No 88
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=89.36 E-value=0.59 Score=47.38 Aligned_cols=114 Identities=18% Similarity=0.100 Sum_probs=70.2
Q ss_pred HHHhhhhhhhhc---Cc-cEEEEeCCcchHHH---HHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHH
Q 007917 77 AGYAADGYARSR---GV-GACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQEL 149 (585)
Q Consensus 77 A~~~A~gyar~t---g~-~v~~~t~GpG~~n~---~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (585)
..-+|.|.|++. +. .++++..|=|+++. .-++..|..-+.|+|+|.-+.... .... ........ +..
T Consensus 147 ~lp~AvG~A~A~~~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~g-i~~~--~~~~~~~~---d~~ 220 (368)
T 1w85_A 147 QYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFA-ISTP--VEKQTVAK---TLA 220 (368)
T ss_dssp HHHHHHHHHHHHHHTTCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEE-TTEE--GGGTCSCS---CSG
T ss_pred cccHHHHHHHHhHhhCCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCcc-ceec--cccccCCC---CHH
Confidence 344666766653 33 55666667777772 335667888999999998665322 1110 00011111 223
Q ss_pred HHhhhceeEEEEec--CcchhHHHHHHHHHHhhhcCCcEEEEecCCCCC
Q 007917 150 RCFQAITCSQAVVN--NLGDAHELIDTAISTALKESKPVYISISCNLPG 196 (585)
Q Consensus 150 ~~~~~~~k~~~~v~--~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~~ 196 (585)
.+++.+--...+|. +++++...+++|++.+....||+.|++...-..
T Consensus 221 ~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~r~~ 269 (368)
T 1w85_A 221 QKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYG 269 (368)
T ss_dssp GGGGGTTCCEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSS
T ss_pred HHHHHCCCCEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccC
Confidence 45555433344555 688888889998888887789999999876643
No 89
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=89.30 E-value=1.4 Score=47.56 Aligned_cols=118 Identities=9% Similarity=0.054 Sum_probs=75.9
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEc--CchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCC-C
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIG--DGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGP-Y 503 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~G--DGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~-~ 503 (585)
.+++....-.+ +.-+|.|.+.+.. +++|++- =|... .+.+|...++|+++|.-+-....... +.. .
T Consensus 42 i~~i~~~~E~~---Aa~~A~Gyar~tg--~~v~~~TsGpG~~N~~~gia~A~~~~vPll~itg~~~~~~~~~---~~~~~ 113 (568)
T 2wvg_A 42 MEQVYCCNELN---CGFSAEGYARAKG--AAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAA---GHVLH 113 (568)
T ss_dssp SEEEECSSHHH---HHHHHHHHHHHHS--CEEEEECTTTTHHHHHHHHHHHHHTTCCEEEEEEECCGGGTTT---TCBCT
T ss_pred ceEeccCcHHH---HHHHHHHHHHhhC--CeEEEEeCCCCHHHHHHHHHHHhhhCCCEEEEeCCCChhHhcc---Cccee
Confidence 44555444333 4467888887753 7777663 33333 88889999999999998766543210 000 0
Q ss_pred CCC--CC-CCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--cCCCCeEEEEEEcCC
Q 007917 504 NVI--KN-WDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVHK 560 (585)
Q Consensus 504 ~~~--~~-~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~~~~gp~vIeV~v~~ 560 (585)
..+ .. .|...+.+.+-- +..++.+++++...+++|+. ....||+.|+|..|-
T Consensus 114 ~~~g~~~~~d~~~~~~~~tk-----~~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~dv 170 (568)
T 2wvg_A 114 HALGKTDYHYQLEMAKNITA-----AAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNI 170 (568)
T ss_dssp TSCSSSCCCHHHHHHTTSCS-----CEEEECSGGGHHHHHHHHHHHHHHHTCCEEEEEEGGG
T ss_pred eeccccchHHHHHHHHhhEe-----EEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhH
Confidence 111 11 266777777765 78899999888777777664 123599999999874
No 90
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=88.73 E-value=1.7 Score=47.80 Aligned_cols=116 Identities=18% Similarity=0.174 Sum_probs=75.6
Q ss_pred eEEe-cCchhhHHHhhhhhhhhc-Cc-cEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCC
Q 007917 67 NLVG-CCNELNAGYAADGYARSR-GV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP 143 (585)
Q Consensus 67 ~~i~-~~~E~~A~~~A~gyar~t-g~-~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~ 143 (585)
|++. ...|++++.+|.|+|... |. .++. |..+..+-+..+|..+...+.|++++....... .+.+..-|
T Consensus 415 R~id~gIaE~~~v~~a~GlA~~G~~~~P~~~-t~~~F~~~~~~~ir~~a~~~lpvv~~~t~~g~g-~G~dG~tH------ 486 (675)
T 1itz_A 415 RNVRFGVREHGMGAICNGIALHSPGFVPYCA-TFFVFTDYMRGAMRISALSEAGVIYVMTHDSIG-LGEDGPTH------ 486 (675)
T ss_dssp CBCCCCSCHHHHHHHHHHHHTTCTTCEEEEE-EEGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTT------
T ss_pred CeEeecccHHHHHHHHHHHHhcCCCCEEEEE-EHHHHHHHHHHHHHHHHhcCCCEEEEEECCccc-cCCCCCCc------
Confidence 5554 559999999999999776 35 5555 467777777888888888999988886322111 22221222
Q ss_pred ChHHHHHHhhhceeE-EEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCC
Q 007917 144 DFTQELRCFQAITCS-QAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (585)
Q Consensus 144 ~~~d~~~~~~~~~k~-~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~d 193 (585)
|...+..+++.+... .....++.++..+++.|++. ..+||+|.+|..
T Consensus 487 q~~edla~lr~iP~l~V~~Pad~~e~~~~l~~a~~~---~~~Pv~i~~~r~ 534 (675)
T 1itz_A 487 QPIEHLVSFRAMPNILMLRPADGNETAGAYKVAVLN---RKRPSILALSRQ 534 (675)
T ss_dssp CCSSHHHHHHSSSSCEEECCCSHHHHHHHHHHHHHC---TTSCEEEEECSS
T ss_pred CcHHHHHHhccCCCeEEEECCCHHHHHHHHHHHHHh---CCCcEEEEecCC
Confidence 233456777765432 34445666666666655542 169999999964
No 91
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=88.71 E-value=1.3 Score=49.02 Aligned_cols=115 Identities=15% Similarity=0.097 Sum_probs=74.9
Q ss_pred eEEe-cCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCC
Q 007917 67 NLVG-CCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPD 144 (585)
Q Consensus 67 ~~i~-~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~ 144 (585)
|++. ..-|++++.+|.|.|...|. .++.+ ..+=..-+...|..+-..+.||+++....... .|.+..-||
T Consensus 449 R~~d~GIaE~~mv~~AaGlA~~~G~~Pv~~~-f~~F~~~~~~~ir~~a~~~lpv~~v~thdg~g-vG~dG~THq------ 520 (711)
T 3uk1_A 449 NHINYGVREFGMSAAINGLVLHGGYKPFGGT-FLTFSDYSRNALRVAALMKVPSIFVFTHDSIG-LGEDGPTHQ------ 520 (711)
T ss_dssp SEEECCSCHHHHHHHHHHHHHHSSCEEEEEE-EGGGHHHHHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTTC------
T ss_pred cEEEeCccHHHHHHHHHHHHHcCCCEEEEEE-hHHHHHHHHHHHHHhhhcCCCEEEEEECCCcC-cCCCCCccC------
Confidence 5664 47899999999999986676 66653 44444446667766667899998876322221 222222232
Q ss_pred hHHHHHHhhhceeEE-EEecCcchhHHHHHHHHHHhhhcCCcEEEEecCC
Q 007917 145 FTQELRCFQAITCSQ-AVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (585)
Q Consensus 145 ~~d~~~~~~~~~k~~-~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~d 193 (585)
...+..+++.+.-.. ....++.++..+++.|++ ..+||+|.+|..
T Consensus 521 ~~ed~a~lr~iPnl~V~~Pad~~E~~~~l~~Ai~----~~~Pv~ir~~r~ 566 (711)
T 3uk1_A 521 SVEHVASLRLIPNLDVWRPADTVETAVAWTYAVA----HQHPSCLIFSRQ 566 (711)
T ss_dssp CSSHHHHHHTSTTCEEECCSSHHHHHHHHHHHHH----SSSCEEEECCSS
T ss_pred ChhHHHHHhcCCCCEEEecCCHHHHHHHHHHHHh----cCCCEEEEeeCC
Confidence 233478888875433 445567777777777765 579999998853
No 92
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=88.53 E-value=0.48 Score=44.84 Aligned_cols=69 Identities=14% Similarity=0.152 Sum_probs=44.3
Q ss_pred HHHHHHhhhCCEEEEeCCccCCcccccccccC--CCcceEEEcCCceeecC-CCccccccHHHHHHHHHHHh
Q 007917 294 SFCGEIVESADAYVFVGPIFNDYSSVGYSLLI--KKEKAIIVQPHRVTVGN-GPSLGWVFMADFLSALAKKL 362 (585)
Q Consensus 294 ~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~--~~~~~i~id~~~~~~~~-~~~~~~~~~~~~l~~L~~~l 362 (585)
..+.+.++++|++|++|+++.-.....+.... .+.++|.|+.++..... .......++.++|..|.+.+
T Consensus 159 ~~a~~~~~~adl~lviGTSl~V~Pa~~l~~~a~~~g~~~i~iN~~~t~~~~~~~~~i~~~~~~~l~~l~~~l 230 (235)
T 1s5p_A 159 DEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKL 230 (235)
T ss_dssp HHHHHHHHHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESSSCC---CCSEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEECcCCchhhHHHHHHHHHHcCCeEEEEECCCCCCCccccEEEeCCHHHHHHHHHHHH
Confidence 35667889999999999998654433332221 35678999988765431 11222347888888887765
No 93
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=87.50 E-value=1.6 Score=48.07 Aligned_cols=116 Identities=14% Similarity=0.081 Sum_probs=75.2
Q ss_pred eEE-ecCchhhHHHhhhhhhhhcC-c-cEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCC
Q 007917 67 NLV-GCCNELNAGYAADGYARSRG-V-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP 143 (585)
Q Consensus 67 ~~i-~~~~E~~A~~~A~gyar~tg-~-~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~ 143 (585)
|++ ....|++++.+|.|+|...| + .++ .+..+-..-+..+|..+-..+.||+++....... .|.+..-|
T Consensus 410 R~~d~gIaE~~~vg~a~GlA~~Gg~~~P~~-~~f~~F~~~~~~air~~a~~~lpvv~v~t~~g~g-~G~dG~tH------ 481 (680)
T 1gpu_A 410 RYIRYGIREHAMGAIMNGISAFGANYKPYG-GTFLNFVSYAAGAVRLSALSGHPVIWVATHDSIG-VGEDGPTH------ 481 (680)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHCTTCEEEE-EEEHHHHGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTT------
T ss_pred ceecCCccHHHHHHHHHHHHhcCCCceEEE-eehHHHHHHHHHHHHHHHhcCCCEEEEEeCCccc-cCCCCCcc------
Confidence 454 47789999999999998875 5 555 5666665667788888788899988875322211 22222223
Q ss_pred ChHHHHHHhhhceeE-EEEecCcchhHHHHHHHHHHhhhcCCcEEEEecCC
Q 007917 144 DFTQELRCFQAITCS-QAVVNNLGDAHELIDTAISTALKESKPVYISISCN 193 (585)
Q Consensus 144 ~~~d~~~~~~~~~k~-~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~d 193 (585)
|...+..+++.+... .....++.++..+++.|++. .++||+|.+|..
T Consensus 482 q~~edla~lr~iP~l~V~~Pad~~e~~~~l~~A~~~---~~~Pv~i~~~r~ 529 (680)
T 1gpu_A 482 QPIETLAHFRSLPNIQVWRPADGNEVSAAYKNSLES---KHTPSIIALSRQ 529 (680)
T ss_dssp CCSSHHHHHHTSSSCEEECCCSHHHHHHHHHHHHHC---SSCCEEEECCSS
T ss_pred CCHHHHHHhcCCCCCEEEecCCHHHHHHHHHHHHHh---CCCcEEEEecCC
Confidence 233457888876543 33445666666666655542 279999999864
No 94
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=86.80 E-value=1.5 Score=47.41 Aligned_cols=114 Identities=11% Similarity=0.006 Sum_probs=71.2
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN 504 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~ 504 (585)
.+++....-.+ +.-+|.|.+.+. +++.+|++ |=|... .+.+|...++|+++|.-+-....+ ..+.
T Consensus 50 i~~i~~~hE~~---Aa~aAdGyAr~t-G~pgv~~~TsGpG~~N~~~gia~A~~d~vPll~itG~~p~~~~----g~~~-- 119 (578)
T 3lq1_A 50 LKIYVDVDERS---AGFFALGLAKAS-KRPVVLLCTSGTAAANYFPAVAEANLSQIPLIVLTADRPHELR----NVGA-- 119 (578)
T ss_dssp CEEEECSSHHH---HHHHHHHHHHHH-CCCEEEEECSSHHHHTTHHHHHHHHHTTCCEEEEEEECCGGGT----TSSC--
T ss_pred ceEEEecCcHH---HHHHHHHHHHhh-CCCEEEEECCchhhhhhhHHHHHHHhcCCCeEEEeCCCCHHhh----cCCC--
Confidence 44555444333 334688888775 67777776 444433 889999999999999865432211 0111
Q ss_pred CCCCCCHHHHHHHhcCCCCCccEEEecCHHHHH-------HHHHHhhh---cCCCCeEEEEEEcC
Q 007917 505 VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELT-------EAMKTATG---EQKDSLCFIEVFVH 559 (585)
Q Consensus 505 ~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~-------~al~~a~~---~~~~gp~vIeV~v~ 559 (585)
+..+|...+.+.+-- +.+++.+++++. .++++|+. ....||++|+|..|
T Consensus 120 -~Qe~d~~~~~~~~tk-----~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~d 178 (578)
T 3lq1_A 120 -PQAMDQLHLYGSHVK-----DFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPLR 178 (578)
T ss_dssp -TTCCCCTTTTGGGSS-----EEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEECC
T ss_pred -CCCcCHhhHHhhhee-----eEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECccC
Confidence 234577777777765 677887765432 24555543 12479999999985
No 95
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=86.68 E-value=0.92 Score=45.68 Aligned_cols=70 Identities=10% Similarity=0.027 Sum_probs=45.9
Q ss_pred HHHHhhhCCEEEEeCCccCCcccccccc-cCCCcceEEEcCCceeecCCCccccccHHHHHHHHHHHhccC
Q 007917 296 CGEIVESADAYVFVGPIFNDYSSVGYSL-LIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKN 365 (585)
Q Consensus 296 ~~~~l~~aD~vl~lG~~~~~~~~~~~~~-~~~~~~~i~id~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~ 365 (585)
+.+.+.+||++|++|+++.-+.-..+-. ...+..+|.|+.++............++.+++..|.+.+.+.
T Consensus 249 a~~~~~~aDllLviGTSL~V~Paa~lv~~~~~~~~~v~IN~~~t~~~~~dl~i~g~~~~vl~~L~~~lgw~ 319 (354)
T 2hjh_A 249 IREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKHAEFDLSLLGYCDDIAAMVAQKCGWT 319 (354)
T ss_dssp HHHHTTTCCEEEEESCCCCEETGGGHHHHSCTTSCEEEEESSCCTTSCCSEEEESCHHHHHHHHHHHHTCC
T ss_pred HHHHHhhCCEEEEECcCCCchhHHHHHHHHhcCCcEEEEcCCCCCCCCcCEEEeCCHHHHHHHHHHHcCCC
Confidence 4566789999999999986544333322 223557888988776322111222347889999999888654
No 96
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=86.06 E-value=2.2 Score=46.95 Aligned_cols=115 Identities=20% Similarity=0.166 Sum_probs=70.6
Q ss_pred eEE-ecCchhhHHHhhhhhhhhcCc-cEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCC
Q 007917 67 NLV-GCCNELNAGYAADGYARSRGV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPD 144 (585)
Q Consensus 67 ~~i-~~~~E~~A~~~A~gyar~tg~-~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~ 144 (585)
|++ ...-|++++.+|.|.|...|. .++- |..+-..-+-.++..+...+.||+++....... .|.+..-||.
T Consensus 428 R~~d~GIaE~~mv~~A~GlA~~gG~~P~~~-tf~~Fs~f~~~air~~al~~lpVv~v~~~~gig-vG~dG~THq~----- 500 (690)
T 3m49_A 428 KNIWYGVREFAMGAAMNGIALHGGLKTYGG-TFFVFSDYLRPAIRLAALMQLPVTYVFTHDSIA-VGEDGPTHEP----- 500 (690)
T ss_dssp CEEECCSCHHHHHHHHHHHHHHSSCEEEEE-EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCGGGCC-----
T ss_pred ceEEcCchHHHHHHHHHHHHHcCCCEEEEE-ecHHHHHHHHHHHHHHHhcCCCcEEEEECCCcC-CCCCCCccCC-----
Confidence 444 567999999999999998675 6554 333333334556666677899988887433322 2322223332
Q ss_pred hHHHHHHhhhceeEE-EEecCcchhHHHHHHHHHHhhhc-CCcEEEEecCC
Q 007917 145 FTQELRCFQAITCSQ-AVVNNLGDAHELIDTAISTALKE-SKPVYISISCN 193 (585)
Q Consensus 145 ~~d~~~~~~~~~k~~-~~v~~~~~~~~~l~~A~~~a~~~-~gPV~i~iP~d 193 (585)
..+..+++.+.-.. ....++.++..+ ++.|... .+||+|.+|..
T Consensus 501 -ied~a~lr~iPnl~V~~Pad~~E~~~~----l~~Ai~~~~~Pv~ir~~R~ 546 (690)
T 3m49_A 501 -IEQLAALRAMPNVSVIRPADGNESVAA----WRLALESTNKPTALVLTRQ 546 (690)
T ss_dssp -SSHHHHHHTSTTCEEECCSSHHHHHHH----HHHHHHCSSSCEEEECCSS
T ss_pred -HHHHHHHhcCCCCEEEeeCCHHHHHHH----HHHHHHcCCCCEEEEeecc
Confidence 23468888875543 334455554444 4455554 69999998853
No 97
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=85.69 E-value=1.2 Score=44.29 Aligned_cols=71 Identities=14% Similarity=0.150 Sum_probs=46.6
Q ss_pred HHHHHhhhCCEEEEeCCccCCccccccccc--CCCcceEEEcCCceeecC-CCccccccHHHHHHHHHHHhccC
Q 007917 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTVGN-GPSLGWVFMADFLSALAKKLRKN 365 (585)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~~~~~~~~-~~~~~~~~~~~~l~~L~~~l~~~ 365 (585)
.+.+.+.+||++|++|+++.-+.-.++-.. ..+.++|.|+.++..... .......++.+++..|.+.|...
T Consensus 199 ~A~~~~~~aDllLViGTSL~V~Paa~Lp~~a~~~G~~vviIN~~pT~~d~~adl~i~g~a~evl~~L~~~Lg~~ 272 (355)
T 3pki_A 199 LADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMEHLGLE 272 (355)
T ss_dssp HHHHHHHHCSEEEEESCCCCSTTGGGTTHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCEEEEEeeCCCchhhhhhHHHHHhcCCEEEEECCCCCCCCCccCEEEeCCHHHHHHHHHHHhCCC
Confidence 355677899999999999865544333211 234578889888754321 11222346889999999988654
No 98
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=85.52 E-value=0.78 Score=43.68 Aligned_cols=69 Identities=12% Similarity=0.094 Sum_probs=44.1
Q ss_pred HHHHHhhhCCEEEEeCCccCCccccccccc--CCCcceEEEcCCceeecC-CCccccccHHHHHHHHHHHhc
Q 007917 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTVGN-GPSLGWVFMADFLSALAKKLR 363 (585)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~~~~~~~~-~~~~~~~~~~~~l~~L~~~l~ 363 (585)
.+.+.+++||++|++|+++.-..-..+... .++.++|.|+.++..... ....-..++.++|..|.+.+.
T Consensus 173 ~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~~l~~l~~~lg 244 (246)
T 1yc5_A 173 EAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLKYNMDVVEFARRVMEEGG 244 (246)
T ss_dssp HHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCEEEEECCCCcchhHHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHHHHHHHHHHcC
Confidence 355677899999999998764443222111 225678999988764421 112223478899999887663
No 99
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=85.13 E-value=1.3 Score=43.57 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=46.6
Q ss_pred HHHHHhhhCCEEEEeCCccCCcccccccc--cCCCcceEEEcCCceeecC-CCccccccHHHHHHHHHHHhccC
Q 007917 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGN-GPSLGWVFMADFLSALAKKLRKN 365 (585)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~~~~~~~~-~~~~~~~~~~~~l~~L~~~l~~~ 365 (585)
.+.+.+.+||++|++|+++.-+.-.++-. .....+++.|+.++..... .......++.+++..|.+.+...
T Consensus 199 ~a~~~~~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN~~~t~~d~~adl~i~g~~~evl~~L~~~Lg~~ 272 (318)
T 3k35_A 199 LADEASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHDRHADLRIHGYVDEVMTRLMKHLGLE 272 (318)
T ss_dssp HHHHHHHTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHHTCC
T ss_pred HHHHHHhcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEECCCCCCCCCcccEEEeCCHHHHHHHHHHHhCCC
Confidence 35567789999999999986554433321 1234578889887754321 11122346889999999988754
No 100
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=85.08 E-value=1.2 Score=45.72 Aligned_cols=105 Identities=13% Similarity=0.007 Sum_probs=58.5
Q ss_pred chHHHHHHHhhhcCCCcEEEEEcCchhH---hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHH--H
Q 007917 443 WSVGATLGYAQAAKDKRVIACIGDGSFQ---EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVN--A 517 (585)
Q Consensus 443 ~~lpaAiGaalA~p~~~vv~v~GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~--a 517 (585)
.++.+|+|++++ ..|+++...|.|-.. .|.++...++|+++++.+..+.+..... +.+-...-....+. .
T Consensus 75 ~a~~~a~Gaa~a-G~r~~~~ts~~G~~~~~d~l~~aa~~~~P~Vi~~~~~~~~~~g~~~----~~~~sd~~~~~~~~~g~ 149 (395)
T 1yd7_A 75 ASIAAAIGASWA-GAKAMTATSGPGFSLMQENIGYAVMTETPVVIVDVQRSGPSTGQPT----LPAQGDIMQAIWGTHGD 149 (395)
T ss_dssp HHHHHHHHHHHT-TCCEEEEEETTHHHHHTTTCC----CCCCEEEEEEC------------------------------C
T ss_pred HHHHHHHHHHHh-CCcEEEEeCchHHHHHHHHHHHHHhcCCCEEEEEeeCCCCCCCCCc----ccchhHHHHHHhccCCC
Confidence 467889999987 356777777887665 6777888999999999987766521000 00000000011122 2
Q ss_pred hcCCCCCccEEEecCHHHHHHHHHHhhh--cCCCCeEEEEEE
Q 007917 518 IHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVF 557 (585)
Q Consensus 518 ~G~~~~~~~~~~v~~~~eL~~al~~a~~--~~~~gp~vIeV~ 557 (585)
+|. ..+...+++|....+..|+. .+.+.|+++...
T Consensus 150 ~g~-----~vl~p~~~qea~~l~~~A~~lA~~~~~PVi~~~~ 186 (395)
T 1yd7_A 150 HSL-----IVLSPSTVQEAFDFTIRAFNLSEKYRTPVILLTD 186 (395)
T ss_dssp CCC-----EEECCCSHHHHHHHHHHHHHHHHHHTSEEEEEEC
T ss_pred cce-----EEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEcc
Confidence 355 77778899999988888874 224589887753
No 101
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=85.01 E-value=1.5 Score=44.95 Aligned_cols=112 Identities=15% Similarity=-0.058 Sum_probs=67.8
Q ss_pred HHhhhhhhhhc---Cc-cEEEEeCCcchHH---HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeecc-CCCChHHHH
Q 007917 78 GYAADGYARSR---GV-GACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTI-GLPDFTQEL 149 (585)
Q Consensus 78 ~~~A~gyar~t---g~-~v~~~t~GpG~~n---~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~-~~~~~~d~~ 149 (585)
.-+|.|.|++. +. .++++..|=|+++ ..-++..|..-++|+|+|.-+.... .... ..... ... |..
T Consensus 187 lp~AvGaA~A~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~g-i~~~--~~~~~~~~~---d~a 260 (407)
T 1qs0_A 187 FVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWA-ISTF--QAIAGGEST---TFA 260 (407)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEE-TTEE--GGGGTTTTC---CST
T ss_pred hhHHHHHHHHHHHhCCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEEECCCcc-eeec--cccccCCCC---CHH
Confidence 34566666543 33 5555556767665 3467777888999988887554222 1111 00111 111 223
Q ss_pred HHhhhceeEEEEec--CcchhHHHHHHHHHHhhhcCCcEEEEecCCCC
Q 007917 150 RCFQAITCSQAVVN--NLGDAHELIDTAISTALKESKPVYISISCNLP 195 (585)
Q Consensus 150 ~~~~~~~k~~~~v~--~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~ 195 (585)
..++.+--...+|. +++++...+++|++.+....||+.|++-..-.
T Consensus 261 ~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~ 308 (407)
T 1qs0_A 261 GRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRA 308 (407)
T ss_dssp HHHHHTTCEEEEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCC
T ss_pred HHHHHcCCeEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecc
Confidence 44555433444555 66788888999988888888999999987653
No 102
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=84.18 E-value=1.9 Score=44.17 Aligned_cols=111 Identities=14% Similarity=0.015 Sum_probs=65.7
Q ss_pred HHhhhhhhhhc---Cc-cEEEEeCCcchHH---HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHH
Q 007917 78 GYAADGYARSR---GV-GACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELR 150 (585)
Q Consensus 78 ~~~A~gyar~t---g~-~v~~~t~GpG~~n---~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~ 150 (585)
.-+|.|.|.+. ++ .++++..|=|+++ ..-++..|..-+.|+|+|.-+.... .... ...... ..+...
T Consensus 168 lp~AvG~AlA~~~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~-i~~~--~~~~~~---~~d~~~ 241 (400)
T 2bfd_A 168 IPQAVGAAYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYA-ISTP--TSEQYR---GDGIAA 241 (400)
T ss_dssp HHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEE-TTEE--GGGTCS---SSTTGG
T ss_pred ccHHHHHHHhhhhhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCcee-eeec--ccccCC---CCCHHH
Confidence 34556666543 23 4445555666554 2366777778889999998654322 1110 000111 112345
Q ss_pred HhhhceeEEEEec--CcchhHHHHHHHHHHhhhcCCcEEEEecCCC
Q 007917 151 CFQAITCSQAVVN--NLGDAHELIDTAISTALKESKPVYISISCNL 194 (585)
Q Consensus 151 ~~~~~~k~~~~v~--~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (585)
.++.+--...+|. +++++...+++|++.+....||+.|++-..-
T Consensus 242 ~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR 287 (400)
T 2bfd_A 242 RGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYR 287 (400)
T ss_dssp GTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred HHHHcCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeee
Confidence 5555433344554 6778888888888888777899999998743
No 103
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=83.95 E-value=0.88 Score=43.53 Aligned_cols=68 Identities=16% Similarity=0.135 Sum_probs=43.1
Q ss_pred HHHHHhhhCCEEEEeCCccCCccccccccc--CCCcceEEEcCCceeecC-CCccccccHHHHHHHHHHHh
Q 007917 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTVGN-GPSLGWVFMADFLSALAKKL 362 (585)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~~~~~~~~-~~~~~~~~~~~~l~~L~~~l 362 (585)
.+.+.+++||++|++|+++.-.....+... ..+.++|.|+.++..... ....-..++.++|..|.+.+
T Consensus 176 ~a~~~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~iN~~~~~~d~~~~~~i~~~~~~~l~~l~~~l 246 (253)
T 1ma3_A 176 EAIEEAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMADPIFDVKIIGKAGEVLPKIVEEV 246 (253)
T ss_dssp HHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEEESSCCTTGGGCSEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEECCCceeccHHHHHHHHHHcCCeEEEEeCCCCCCCCceeEEEeCCHHHHHHHHHHHH
Confidence 356677899999999998764443322111 125678999988764421 11222346888888887665
No 104
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=83.91 E-value=1.8 Score=42.77 Aligned_cols=112 Identities=21% Similarity=0.231 Sum_probs=70.1
Q ss_pred CEEEeCcccchhchHHHHHHHHHHhCCCeEEccC--CccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCC
Q 007917 238 PVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFND 315 (585)
Q Consensus 238 pvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~--gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~ 315 (585)
.++-.|.|....+..+.+++||+.||+-|-+|-. -.|.+|.++ .+|.. | ..+.-|++.|.+|-+=.-
T Consensus 204 ivVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~~~--QVGqT-G--------k~V~P~~lYiA~GISGAi 272 (320)
T 1o97_D 204 FIMSIGRGIGEETNVEQFRELADEAGATLCCSRPIADAGWLPKSR--QVGQS-G--------KVVGSCKLYVAMGISGSI 272 (320)
T ss_dssp EEEEECGGGCSGGGHHHHHHHHHHHTCEEEECHHHHHTTSSCGGG--BBSTT-S--------BCCTTCSEEEEESCCCCH
T ss_pred EEEEcCCccCChHHHHHHHHHHHHhCCceeecHHHHhCCCCChhh--EeecC-c--------eEecccceEEEEeccCcH
Confidence 3555567776666788999999999999988743 236666544 45542 2 234455999999965322
Q ss_pred cccccccccCCCcceEEEcCCceee-cCCCcccc-ccHHHHHHHHHHHhc
Q 007917 316 YSSVGYSLLIKKEKAIIVQPHRVTV-GNGPSLGW-VFMADFLSALAKKLR 363 (585)
Q Consensus 316 ~~~~~~~~~~~~~~~i~id~~~~~~-~~~~~~~~-~~~~~~l~~L~~~l~ 363 (585)
....++. ....+|-|+.|+... -....|+. .|+..++.+|.++++
T Consensus 273 QHlaGm~---~s~~IVAIN~D~~ApIF~~ADygiVgDl~~vvP~L~~~l~ 319 (320)
T 1o97_D 273 QHMAGMK---HVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKAQLA 319 (320)
T ss_dssp HHHHHHT---TCSEEEEECSCTTCGGGGTCSEEECSCHHHHHHHHHHHC-
T ss_pred HHHhhcc---cCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHHHHh
Confidence 2222322 233577888887631 11223333 389999999998874
No 105
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=83.61 E-value=1.2 Score=42.33 Aligned_cols=68 Identities=13% Similarity=0.089 Sum_probs=43.2
Q ss_pred HHHHHhhhCCEEEEeCCccCCcccccccc--cCCCcceEEEcCCceeecC-CCccccccHHHHHHHHHHHh
Q 007917 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGN-GPSLGWVFMADFLSALAKKL 362 (585)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~~~~~~~~-~~~~~~~~~~~~l~~L~~~l 362 (585)
.+.+.+++||++|++|+++.-..-..+.. ...+.++|.|+.++..... ....-..++.++|..|.+.+
T Consensus 170 ~a~~~~~~adlllviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d~~~~~~i~~~~~~~l~~l~~~l 240 (249)
T 1m2k_A 170 RAMREVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLTPIADYSLRGKAGEVMDELVRHV 240 (249)
T ss_dssp HHHHHHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEEEEECSSCCTTGGGCSEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEccCCCccchHHHHHHHHHcCCeEEEEeCCCCCCCcceeEEEeCCHHHHHHHHHHHH
Confidence 35567789999999999876544322211 1235678999988764421 11222346888888887665
No 106
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=83.00 E-value=3 Score=42.11 Aligned_cols=110 Identities=16% Similarity=0.165 Sum_probs=64.8
Q ss_pred HHhhhhhhhhc---Cc-cEEEEeCCcchHH---HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHH
Q 007917 78 GYAADGYARSR---GV-GACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELR 150 (585)
Q Consensus 78 ~~~A~gyar~t---g~-~v~~~t~GpG~~n---~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~ 150 (585)
.-+|.|.|++. |. .++++..|=|+++ ..-++..|..-+.|+|+|.-+.... ..... .......++..
T Consensus 146 lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN~~g-~~t~~--~~~~~~~~~~~--- 219 (365)
T 2ozl_A 146 VPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYG-MGTSV--ERAAASTDYYK--- 219 (365)
T ss_dssp HHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEECSEE-TTEEH--HHHCSCCCGGG---
T ss_pred hHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECCCcc-cCCCc--ccccCCCCHHH---
Confidence 34566666553 33 5556666777766 2446778888899999998543211 11100 00000111111
Q ss_pred HhhhceeEEEEec--CcchhHHHHHHHHHHhhhcCCcEEEEecCCCC
Q 007917 151 CFQAITCSQAVVN--NLGDAHELIDTAISTALKESKPVYISISCNLP 195 (585)
Q Consensus 151 ~~~~~~k~~~~v~--~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv~ 195 (585)
+.+--...+|. +++++...+++|+..+....||+.|++...-.
T Consensus 220 --ra~g~p~~~VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~ 264 (365)
T 2ozl_A 220 --RGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRY 264 (365)
T ss_dssp --TTTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCS
T ss_pred --HhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecC
Confidence 11111223444 78888999999998888889999999987643
No 107
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=82.84 E-value=4 Score=44.91 Aligned_cols=156 Identities=13% Similarity=0.044 Sum_probs=89.9
Q ss_pred cccHHHHHHHHHHHcCC--CEEEecCCCChHH-H-----HHhhhcC-------CC---CeEE-ecCchhhHHHhhhhhhh
Q 007917 26 VGTLGRHLARRLVEIGA--KDVFSVPGDFNLT-L-----LDHLIAE-------PE---LNLV-GCCNELNAGYAADGYAR 86 (585)
Q Consensus 26 ~~~~a~~i~~~L~~~Gv--~~vFg~PG~~~~~-l-----~~al~~~-------~~---i~~i-~~~~E~~A~~~A~gyar 86 (585)
.+..-+++.+.|.+..- ..++++-.+-... - .+.+.+. ++ =|++ ...-|++++.+|.|.|.
T Consensus 374 ~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~~~~~~~~p~~~~~R~id~GIaE~~mv~~A~GlA~ 453 (700)
T 3rim_A 374 ALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPPSISTKEYTAHWYGRTLHFGVREHAMGAILSGIVL 453 (700)
T ss_dssp CEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCGGGCCSSCCEETTCCEEECCSCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhcccccccccCCcccCCceeecCccHHHHHHHHHHHHH
Confidence 45566777777766543 3555543332111 0 1222211 21 2666 45899999999999999
Q ss_pred hcCc-cEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEE-EEecC
Q 007917 87 SRGV-GACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQ-AVVNN 164 (585)
Q Consensus 87 ~tg~-~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~-~~v~~ 164 (585)
..|. .++- |..+=..-+.+.+..+...+.||+++....... .|.+..-| |...+..+++.+.-.. ....+
T Consensus 454 ~gG~~Pv~~-tF~~F~d~~~~~ir~~al~~lpvv~v~thdg~g-vG~dG~TH------q~ied~a~lr~iPnl~V~~Pad 525 (700)
T 3rim_A 454 HGPTRAYGG-TFLQFSDYMRPAVRLAALMDIDTIYVWTHDSIG-LGEDGPTH------QPIEHLSALRAIPRLSVVRPAD 525 (700)
T ss_dssp HSSCEEEEE-EEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGG-GCTTCTTT------SCSSHHHHHHTSTTCEEECCSS
T ss_pred cCCCEEEEE-ecHHHHHHHHHHHHHhcCCCCCEEEEEeCCCcc-cCCCCCcc------CChhHHHHHhcCCCCEEEeCCC
Confidence 8675 6654 334433446667777778899988876432222 23222223 2334578888875433 33445
Q ss_pred cchhHHHHHHHHHHhhhc-C--CcEEEEecCC
Q 007917 165 LGDAHELIDTAISTALKE-S--KPVYISISCN 193 (585)
Q Consensus 165 ~~~~~~~l~~A~~~a~~~-~--gPV~i~iP~d 193 (585)
+.++..+++.| ... . |||+|.+|..
T Consensus 526 ~~e~~~~l~~A----i~~~~~~~Pv~ir~~r~ 553 (700)
T 3rim_A 526 ANETAYAWRTI----LARRNGSGPVGLILTRQ 553 (700)
T ss_dssp HHHHHHHHHHH----HTTTTCSSCEEEECCSS
T ss_pred HHHHHHHHHHH----HHccCCCCCEEEEeccc
Confidence 55555555544 443 3 7999998854
No 108
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=81.97 E-value=2 Score=44.56 Aligned_cols=71 Identities=10% Similarity=0.041 Sum_probs=46.0
Q ss_pred HHHHHhhhCCEEEEeCCccCCccccccc-ccCCCcceEEEcCCceeecCCCccccccHHHHHHHHHHHhccC
Q 007917 295 FCGEIVESADAYVFVGPIFNDYSSVGYS-LLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKN 365 (585)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~-~~~~~~~~i~id~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~ 365 (585)
.+.+.+.+||++|++|+++.-+.-.++- .+..+..+|.|+.++.........-..+.++++..|.+.+.+.
T Consensus 386 ~a~~~~~~aDLlLVIGTSL~VyPaA~Lv~~a~~~~p~ViIN~ept~~~~~Dl~l~G~cdevv~~L~~~LGw~ 457 (492)
T 4iao_A 386 SIREDILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKHAEFDLSLLGYCDDIAAMVAQKCGWT 457 (492)
T ss_dssp HHHHHTTTCSEEEEESCCCCEETGGGHHHHSBTTSCEEEEESSCCTTSCCSEEEESCHHHHHHHHHHHTTCC
T ss_pred HHHHHHhhCCEEEEeccCCCccchhhHHHHHhcCCcEEEEcCCCCCCCCccEEEeCCHHHHHHHHHHHhCCC
Confidence 3456778999999999998655443332 2233456888988775321111222346889999999998764
No 109
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=81.34 E-value=1.5 Score=42.31 Aligned_cols=65 Identities=9% Similarity=-0.087 Sum_probs=40.8
Q ss_pred HHHHHhhhCCEEEEeCCccCCcccccccc--cCCCcceEEEcCCceeecC-CCccccccHHHHHHHHH
Q 007917 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL--LIKKEKAIIVQPHRVTVGN-GPSLGWVFMADFLSALA 359 (585)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~--~~~~~~~i~id~~~~~~~~-~~~~~~~~~~~~l~~L~ 359 (585)
.+.+.+.+||++|++|+++.-+.-..+-. ...+.+++.|+.++..... .......++..+|..|+
T Consensus 205 ~a~~~~~~aDl~lviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~d~~~~~~i~g~~~~~l~~l~ 272 (273)
T 3riy_A 205 EVDRELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPATNRFRFHFQGPCGTTLPEAL 272 (273)
T ss_dssp HHHHHHHHCSEEEEESCCSCEETGGGHHHHHHHTTCCEEEEESSCCTTGGGSSEEEESCHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEeeCCcchhHHHhHHHHHHCCCEEEEECCCCCCCCcceeEEEeCCHHHHHHHHh
Confidence 45567789999999999986544333321 2245678999988764431 11122346778887764
No 110
>3c2q_A Uncharacterized conserved protein; putative LOR/SDH, structural genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis S2}
Probab=80.82 E-value=3.6 Score=39.99 Aligned_cols=97 Identities=18% Similarity=0.172 Sum_probs=57.3
Q ss_pred HhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcceEEEcCCceee
Q 007917 261 ATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTV 340 (585)
Q Consensus 261 ~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~~~~~~ 340 (585)
+.++|++-. |.|-+|-||.=-..+-.-+....++.++++|.||.+.+.|-...+++.. +...+++.||+++...
T Consensus 236 k~~VPfVLA----GSIRDDGPLPdvitdv~~AQ~~mr~~~~~a~~vimlaTmLHSIAtGNm~--Ps~v~~~cVDInp~~V 309 (345)
T 3c2q_A 236 KNNIPYVLA----GSIRDDGPIPDVITDSMVAQDKMRTTVMDKKMVIMLSTLLHSVATGNLM--PSYIKTVCVDIQPSTV 309 (345)
T ss_dssp HTTCCEEEE----CCTTCSSCCTTCBCBHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHTTC--CTTSEEEEEESCHHHH
T ss_pred hCCCCEEEE----eeccCCCCCCcccccHHHHHHHHHHHhccCCchHHHHHHHHHHHhcccC--cccceEEEEECCHHHh
Confidence 456666542 3455555552100000011233455778999999999988766665443 3345799999998654
Q ss_pred c----CCCc--ccc-ccHHHHHHHHHHHhc
Q 007917 341 G----NGPS--LGW-VFMADFLSALAKKLR 363 (585)
Q Consensus 341 ~----~~~~--~~~-~~~~~~l~~L~~~l~ 363 (585)
. +... .+- .|+.+||..|.+.|.
T Consensus 310 tKL~DRGs~qa~giVTdvg~Fl~~L~~~L~ 339 (345)
T 3c2q_A 310 TKLMDRGTSQAIGVVTDVGVFLVLLLKELE 339 (345)
T ss_dssp HHHHHTCCSSEEEEESCHHHHHHHHHHHHH
T ss_pred hhhhccCceeEEEEEecHHHHHHHHHHHHH
Confidence 3 1111 111 289999999988774
No 111
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=79.68 E-value=5 Score=40.55 Aligned_cols=95 Identities=15% Similarity=0.072 Sum_probs=55.7
Q ss_pred hHHHHHHHhhhcCCCcEEEE-EcCchhH---hHHH-HHHh--------CCCeEEEEEeCCceeeeeeecCCCCCCCCCCC
Q 007917 444 SVGATLGYAQAAKDKRVIAC-IGDGSFQ---EIST-MIRC--------GQRSIIFLINNGGYTIEVEIHDGPYNVIKNWD 510 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v-~GDGsf~---eL~t-a~~~--------~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d 510 (585)
.++.|.|++++ .-++++.+ .+|.... .|.. +... ++|+++++-+-+..+ ++.. +...
T Consensus 110 ~v~~a~G~A~~-G~rpv~~~tf~~Fl~~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g------~g~~---hs~~ 179 (369)
T 1ik6_A 110 ILGFAMGMAMA-GLKPVAEIQFVDFIWLGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTR------GGLY---HSNS 179 (369)
T ss_dssp HHHHHHHHHHT-TCEEEEECCCC----CCHHHHHHHHHHHHC------CCCCEEEEEECC--------------------
T ss_pred HHHHHHHHHHC-CCeeEEEecchhHHHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCC------CCcc---cccc
Confidence 46778888886 34566655 7885432 4433 3322 999888876554322 1111 1222
Q ss_pred HHHHHHHh-cCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEE
Q 007917 511 YTGLVNAI-HNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIE 555 (585)
Q Consensus 511 ~~~la~a~-G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIe 555 (585)
+..+.+++ |+ ..+...|+.|+..+|+.+++ .++|++|-
T Consensus 180 ~~a~l~~iPnl-----~V~~Psd~~e~~~ll~~A~~--~~~Pv~i~ 218 (369)
T 1ik6_A 180 PEAIFVHTPGL-----VVVMPSTPYNAKGLLKAAIR--GDDPVVFL 218 (369)
T ss_dssp HHHHHHTCTTC-----EEECCCSHHHHHHHHHHHHH--SSSCEEEE
T ss_pred HHHHHcCCCCc-----EEEecCCHHHHHHHHHHHHh--CCCCEEEE
Confidence 34444444 44 77888999999999999996 78999983
No 112
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=79.40 E-value=4.9 Score=42.98 Aligned_cols=118 Identities=9% Similarity=-0.014 Sum_probs=68.5
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEE--cCchhH---hHHHHHHhCCCeEEEEEeCCceeee--eeecCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACI--GDGSFQ---EISTMIRCGQRSIIFLINNGGYTIE--VEIHDGP 502 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~--GDGsf~---eL~ta~~~~lpv~ivV~NN~~~~~~--~~~~~~~ 502 (585)
.+++....-.+ +.-+|.|.+.+. + +.+|++ |=|... .+.+|...++|+++|.-+-...... ..+|...
T Consensus 44 i~~i~~~~E~~---A~~~A~Gyar~t-g-~~v~~~tsGpG~~N~~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~ 118 (552)
T 1ovm_A 44 ICWVGCANELN---ASYAADGYARCK-G-FAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTL 118 (552)
T ss_dssp CEEEECSSHHH---HHHHHHHHHHHH-S-CEEEEEETTHHHHHTHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSC
T ss_pred ceEEeeCcHHH---HHHHHHHHHHhh-C-CcEEEEccCCcHHHHHHHHHHHhhhcCCEEEEECCCCHHHHhccccccccc
Confidence 34554444332 446788888776 3 556655 333333 8889999999999999876543321 0011000
Q ss_pred CCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--cCCCCeEEEEEEcC
Q 007917 503 YNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVH 559 (585)
Q Consensus 503 ~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~~~~gp~vIeV~v~ 559 (585)
... ..-|+.++.+.+-. +.+++.+ +++...+++|+. ....||+.|++..|
T Consensus 119 g~~-~~q~~~~~~~~~tk-----~~~~v~~-~~~~~~i~~A~~~a~~~~GPV~l~iP~d 170 (552)
T 1ovm_A 119 GDG-EFRHFYHMSEPITV-----AQAVLTE-QNACYEIDRVLTTMLRERRPGYLMLPAD 170 (552)
T ss_dssp SSS-CCSHHHHHTGGGCS-----EEEECCT-TTHHHHHHHHHHHHHHHTCCEEEEEEHH
T ss_pred CCC-cHHHHHHHHHhhee-----EEEEEcc-ccHHHHHHHHHHHHHhCCCCEEEEeehh
Confidence 000 01145566666655 7788888 555555555543 11359999999875
No 113
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=78.34 E-value=4.2 Score=39.38 Aligned_cols=70 Identities=9% Similarity=-0.038 Sum_probs=44.9
Q ss_pred HHHhhhCCEEEEeCCccCCccccccccc-CCCcceEEEcCCcee-e---cC-CCccccccHHHHHHHHHHHhccCc
Q 007917 297 GEIVESADAYVFVGPIFNDYSSVGYSLL-IKKEKAIIVQPHRVT-V---GN-GPSLGWVFMADFLSALAKKLRKNT 366 (585)
Q Consensus 297 ~~~l~~aD~vl~lG~~~~~~~~~~~~~~-~~~~~~i~id~~~~~-~---~~-~~~~~~~~~~~~l~~L~~~l~~~~ 366 (585)
.+.+.+||++|++|+++.-+.-.++... ..+..+|.|+.++.. + .+ .......++...+..|.+.+.+..
T Consensus 192 ~~~~~~aDlllviGTSl~V~Paa~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~~~g~~~~~~~~L~~~lgw~~ 267 (285)
T 3glr_A 192 VVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLAWHPRSRDVAQLGDVVHGVESLVELLGWTE 267 (285)
T ss_dssp HHHHHHCSEEEEESCCCCEETTGGGGGSSCTTSCEEEEESSCCTHHHHSCCTTEEEEESCHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCCEEEEeCCCCccccHHHHHHHHhCCCcEEEECCCCcCccccCCCCccEEEcCCHHHHHHHHHHHhCCHH
Confidence 4567899999999999865544333322 234568889888752 1 10 111222467889999998887543
No 114
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=78.09 E-value=4.1 Score=40.16 Aligned_cols=112 Identities=17% Similarity=0.260 Sum_probs=70.6
Q ss_pred CEEEeCcccchhchHHHHHHHHHHhCCCeEEccC--CccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCC
Q 007917 238 PVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFND 315 (585)
Q Consensus 238 pvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~--gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~ 315 (585)
.++-.|.|....+..+.+++||+.||+-|-+|-. -.|.+|.++ .+|.. |. .=.+++.|.+|-+=.-
T Consensus 199 ivVsgGrG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~~~--QVGqT-Gk---------~V~P~lYiA~GISGAi 266 (315)
T 1efv_A 199 VVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPNDM--QVGQT-GK---------IVAPELYIAVGISGAI 266 (315)
T ss_dssp EEEEECGGGCSTGGGHHHHHHHHHHTCEEEECHHHHHTTSSCGGG--BBSTT-SB---------CCCCSEEEEESCCCCH
T ss_pred EEEEcCCcCCChHHHHHHHHHHHHhCCceeecHHHHhCCCCCHHh--eeccC-Cc---------ccCcceEEEecccCcH
Confidence 4555667776666778999999999999988743 236666544 45542 31 1268999999965322
Q ss_pred cccccccccCCCcceEEEcCCceee-cCCCcccc-ccHHHHHHHHHHHhcc
Q 007917 316 YSSVGYSLLIKKEKAIIVQPHRVTV-GNGPSLGW-VFMADFLSALAKKLRK 364 (585)
Q Consensus 316 ~~~~~~~~~~~~~~~i~id~~~~~~-~~~~~~~~-~~~~~~l~~L~~~l~~ 364 (585)
....++. ....+|-||.|+... -....|+. .|+..++.+|.++++.
T Consensus 267 QHlaGm~---~s~~IVAIN~D~~ApIf~~ADygiVgDl~~v~P~L~~~l~~ 314 (315)
T 1efv_A 267 QHLAGMK---DSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEILKK 314 (315)
T ss_dssp HHHTTTT---TCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHHTC-
T ss_pred HHHhhcc---cCCEEEEEeCCCCCCcchhcCeEEeeeHHHHHHHHHHHHhc
Confidence 2222322 233577888887631 11223333 3899999999998753
No 115
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=77.87 E-value=1.9 Score=42.02 Aligned_cols=66 Identities=14% Similarity=0.128 Sum_probs=41.7
Q ss_pred HhhhCCEEEEeCCccCCccccccccc-CCCcceEEEcCCcee-e--c--CCCccccccHHHHHHHHHHHhcc
Q 007917 299 IVESADAYVFVGPIFNDYSSVGYSLL-IKKEKAIIVQPHRVT-V--G--NGPSLGWVFMADFLSALAKKLRK 364 (585)
Q Consensus 299 ~l~~aD~vl~lG~~~~~~~~~~~~~~-~~~~~~i~id~~~~~-~--~--~~~~~~~~~~~~~l~~L~~~l~~ 364 (585)
.+.++|++|++|+++.-+.-..+... ..+.++|.|+.++.. + . ........++.+++..|.+.+..
T Consensus 208 ~~~~~DlllviGTSl~V~Pa~~l~~~~~~~~~~v~IN~~~~~~~~~~~~~~d~~i~~~~~~~l~~l~~~l~~ 279 (289)
T 1q1a_A 208 KHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGW 279 (289)
T ss_dssp --CCCCEEEEESCCCCEETTTHHHHHSCTTSEEEEESSSCCTHHHHSCCTTCEEECCCHHHHHHHHHHHHTC
T ss_pred HhccCCEEEEEccCCChhhHHHHHHHHhcCCCEEEEECCCcccCCCCCcceeEEEeCCHHHHHHHHHHHcCC
Confidence 36799999999999865443333222 235678889887753 1 1 01222344789999999887754
No 116
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=75.75 E-value=4.8 Score=43.28 Aligned_cols=118 Identities=7% Similarity=-0.054 Sum_probs=70.9
Q ss_pred CeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchh--H---hHHHHHHhCCCeEEEEEeCCceeeee--eecCCC
Q 007917 430 CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF--Q---EISTMIRCGQRSIIFLINNGGYTIEV--EIHDGP 502 (585)
Q Consensus 430 ~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf--~---eL~ta~~~~lpv~ivV~NN~~~~~~~--~~~~~~ 502 (585)
.+++....-.+ +.-+|.|.+.+. + +.+|++-=|.. . .+.+|...++|+++|.-+........ .++...
T Consensus 64 i~~i~~~~E~~---A~~~A~GyAr~t-G-~~v~~~tsGpG~~N~~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~ 138 (570)
T 2vbf_A 64 MKWIGNANELN---ASYMADGYARTK-K-AAAFLTTFGVGELSAINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTL 138 (570)
T ss_dssp CEEEECSSHHH---HHHHHHHHHHHH-S-CEEEEEETTHHHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSC
T ss_pred CeEECcCcHHH---HHHHHHHHHHHh-C-CeEEEEcCCCCHHHHHHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeec
Confidence 44555444332 446788888765 3 66666543332 2 88889999999999997766543210 001000
Q ss_pred CCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh--cCCCCeEEEEEEcC
Q 007917 503 YNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG--EQKDSLCFIEVFVH 559 (585)
Q Consensus 503 ~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~--~~~~gp~vIeV~v~ 559 (585)
. +-...|+..+.+.+-- +.+++.+ +++...+++|+. ....||+.|++..|
T Consensus 139 ~-~~~~~~~~~~~~~~tk-----~~~~v~~-~~~~~~l~~A~~~A~~~~GPV~l~iP~d 190 (570)
T 2vbf_A 139 A-DGDFKHFMKMHEPVTA-----ARTLLTA-ENATYEIDRVLSQLLKERKPVYINLPVD 190 (570)
T ss_dssp S-SSCCCHHHHHTGGGCS-----EEEECCT-TTHHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_pred c-ccchHHHHHHhhhhEE-----EEEEECc-ccHHHHHHHHHHHHhhCCCCEEEEcchh
Confidence 0 0001135566666665 7788888 777766666654 11459999999876
No 117
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=75.17 E-value=3.7 Score=41.29 Aligned_cols=66 Identities=14% Similarity=0.128 Sum_probs=41.1
Q ss_pred HhhhCCEEEEeCCccCCccccccccc-CCCcceEEEcCCcee-e--c--CCCccccccHHHHHHHHHHHhcc
Q 007917 299 IVESADAYVFVGPIFNDYSSVGYSLL-IKKEKAIIVQPHRVT-V--G--NGPSLGWVFMADFLSALAKKLRK 364 (585)
Q Consensus 299 ~l~~aD~vl~lG~~~~~~~~~~~~~~-~~~~~~i~id~~~~~-~--~--~~~~~~~~~~~~~l~~L~~~l~~ 364 (585)
.+.++|++|+||+++.-+.-..+... ..+.++|.|+.++.. + . ........++..+|..|.+.+.+
T Consensus 216 ~~~~aDllLviGTSl~V~Paa~l~~~~~~g~~~v~IN~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~~Lg~ 287 (361)
T 1q14_A 216 KHPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGW 287 (361)
T ss_dssp ---CCCEEEEESCCCCSTTGGGHHHHSCTTSEEEEESSSCCHHHHHTCCTTCEEECSCHHHHHHHHHHHHTC
T ss_pred hhccCCEEEEECCCCCchhHHHHHHHHhcCCeEEEEeCCCccccccCcccccEEEeCCHHHHHHHHHHHcCC
Confidence 45699999999999875544333322 235678889887753 1 1 01222344788999998887754
No 118
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=73.82 E-value=4 Score=40.41 Aligned_cols=71 Identities=8% Similarity=-0.063 Sum_probs=43.8
Q ss_pred HHHHHhhhCCEEEEeCCccCCcccccccccCC-CcceEEEcCCceeecC---------------------CCccccccHH
Q 007917 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLLIK-KEKAIIVQPHRVTVGN---------------------GPSLGWVFMA 352 (585)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~-~~~~i~id~~~~~~~~---------------------~~~~~~~~~~ 352 (585)
.+.+.+.++|++|++|+++.-+.-..+....+ ....|.|+.++..... .......|+.
T Consensus 213 ~a~~~~~~aDlllviGTSl~V~P~a~l~~~~~~~~~~v~IN~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~gd~~ 292 (323)
T 1j8f_A 213 CMQSDFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKEKAGQSDPFLGMIMGLGGGMDFDSKKAYRDVAWLGECD 292 (323)
T ss_dssp HHHHGGGSCSEEEEESSCSCSHHHHHHHTTSCTTCCEEEEESSCCCCCCHHHHHHHHHHTCCCSSSTTCCSEEEEESCHH
T ss_pred HHHHHHhCCCEEEEEeeCcccHHHHHHHHHHHcCCcEEEEeCCCCCCCcccccccccccccccccccccceeEEEeCCHH
Confidence 35567789999999999986544333322222 3455678877654320 0011224788
Q ss_pred HHHHHHHHHhccC
Q 007917 353 DFLSALAKKLRKN 365 (585)
Q Consensus 353 ~~l~~L~~~l~~~ 365 (585)
+++..|.+.+.+.
T Consensus 293 ~~l~~L~~~lgw~ 305 (323)
T 1j8f_A 293 QGCLALAELLGWK 305 (323)
T ss_dssp HHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCc
Confidence 9999998887643
No 119
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=72.15 E-value=5.2 Score=39.90 Aligned_cols=97 Identities=10% Similarity=-0.022 Sum_probs=60.1
Q ss_pred hHHHHHHHhhhcCCCcEEEE-EcCchhH---hHHHH-H--------HhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCC
Q 007917 444 SVGATLGYAQAAKDKRVIAC-IGDGSFQ---EISTM-I--------RCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWD 510 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v-~GDGsf~---eL~ta-~--------~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d 510 (585)
.++.|.|++++ .-++++.+ .+|.... .|... . ..++|+++++- ++..+- +++... ..+|
T Consensus 74 ~v~~a~G~A~~-G~rp~~~~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~-~G~~g~-----~G~tHs-~~~e 145 (341)
T 2ozl_B 74 FAGIAVGAAMA-GLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGP-NGASAG-----VAAQHS-QCFA 145 (341)
T ss_dssp HHHHHHHHHHT-TCEEEEECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEE-CSCCSS-----CCGGGC-CCCH
T ss_pred HHHHHHHHHHC-CCEEEEEeccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEc-CcCCCC-----CCcchh-hHHH
Confidence 56778888886 34556654 7777643 33322 2 26899888877 343331 221110 2233
Q ss_pred HHHHHHHh-cCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEE
Q 007917 511 YTGLVNAI-HNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVF 557 (585)
Q Consensus 511 ~~~la~a~-G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~ 557 (585)
.+.+.+ |. ..+...|+.|+...++.+++ .++|++|-..
T Consensus 146 --a~l~~iP~l-----~V~~Psd~~e~~~~l~~a~~--~~~Pv~i~~~ 184 (341)
T 2ozl_B 146 --AWYGHCPGL-----KVVSPWNSEDAKGLIKSAIR--DNNPVVVLEN 184 (341)
T ss_dssp --HHHHTSTTC-----EEECCCSHHHHHHHHHHHHH--SSSCEEEEEC
T ss_pred --HHhccCCCC-----EEEEeCCHHHHHHHHHHHHh--cCCCEEEEEC
Confidence 333333 44 77788999999999999996 6799988653
No 120
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=70.85 E-value=8.5 Score=38.79 Aligned_cols=111 Identities=18% Similarity=0.139 Sum_probs=61.7
Q ss_pred HHhhhhhhhh---cCc-cEEEEeCCcchHH---HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHH
Q 007917 78 GYAADGYARS---RGV-GACVVTFTVGGLS---VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELR 150 (585)
Q Consensus 78 ~~~A~gyar~---tg~-~v~~~t~GpG~~n---~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~ 150 (585)
...|.|.|.+ .+. ..+++..|=|.++ ..-++..|..-+.|+|+|.-+.... .... ........ |...
T Consensus 150 l~~a~G~A~a~k~~~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~g-i~~~--~~~~~~~~---d~~~ 223 (367)
T 1umd_A 150 VPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYA-ISVD--YRHQTHSP---TIAD 223 (367)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEE-TTEE--HHHHCSSS---CSGG
T ss_pred hhHHHHHHHHHHHhCCCCeEEEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCCee-eccC--hhhccCCC---CHHH
Confidence 3445555543 233 4444555666554 2234777888999998888765422 1110 00001111 2234
Q ss_pred HhhhceeEEEEec--CcchhHHHHHHHHHHhhhcCCcEEEEecCCC
Q 007917 151 CFQAITCSQAVVN--NLGDAHELIDTAISTALKESKPVYISISCNL 194 (585)
Q Consensus 151 ~~~~~~k~~~~v~--~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (585)
+++.+--....+. ++..+.+.+++|++.+....||+.|++-..-
T Consensus 224 ~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lIe~~t~r 269 (367)
T 1umd_A 224 KAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYR 269 (367)
T ss_dssp GGGGTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCC
T ss_pred HHHHcCCcEEEeCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeec
Confidence 4444322233443 4556677788888888777899999997665
No 121
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=68.28 E-value=13 Score=28.65 Aligned_cols=58 Identities=14% Similarity=0.238 Sum_probs=43.2
Q ss_pred CHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChHHHHHHHHhh
Q 007917 510 DYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRV 574 (585)
Q Consensus 510 d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~~~~~~~~~~~~ 574 (585)
.|..+.+--|. +...|.++.||+..+++... .-..+++.|.+|..+......++.+.+
T Consensus 17 kfkdiikkngf-----kvrtvrspqelkdsieelvk--kynativvvvvddkewaekairfvksl 74 (134)
T 2l69_A 17 KFKDIIKKNGF-----KVRTVRSPQELKDSIEELVK--KYNATIVVVVVDDKEWAEKAIRFVKSL 74 (134)
T ss_dssp HHHHHHHHTTC-----EEEEECSHHHHHHHHHHHTT--CCCCEEEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCc-----eEEEecCHHHHHHHHHHHHH--HhCCeEEEEEEccHHHHHHHHHHHHhc
Confidence 47778888888 88899999999999999874 334566677787766666555555444
No 122
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=64.55 E-value=12 Score=37.11 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=59.3
Q ss_pred hHHHHHHHhhhcCCCcEEEE-EcCchhH---hHHH-HH--H------hCCCeEEEEEeCCceeeeeeecCCCCCCCCCCC
Q 007917 444 SVGATLGYAQAAKDKRVIAC-IGDGSFQ---EIST-MI--R------CGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWD 510 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v-~GDGsf~---eL~t-a~--~------~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d 510 (585)
.+++|.|++++. -|+++.+ .+|+... .|.. +. + .++|+++++-+ ++ +. ++.... ..-|
T Consensus 64 ~~~~a~G~A~~G-~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~-~g-~~-----~G~th~-s~~d 134 (338)
T 1qs0_B 64 IVGTAVGMGAYG-LRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPC-GG-GI-----YGGQTH-SQSP 134 (338)
T ss_dssp HHHHHHHHHHHT-CEEEEECSCGGGCGGGHHHHHTTTTTHHHHTTTSSCCCCEEEEEE-CC-SS-----SCCSSS-SCCC
T ss_pred HHHHHHHHHhCC-CEEEEEeccHhHHHHHHHHHHHHHHHHhhhcCCCCCCCEEEEEeC-CC-CC-----CCcccc-cccH
Confidence 567788888863 4555544 7777643 3332 22 2 36998888754 33 21 221100 1225
Q ss_pred HHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEE
Q 007917 511 YTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIE 555 (585)
Q Consensus 511 ~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIe 555 (585)
..-+..--|+ ..+...|+.|+...++.|++ .++|++|-
T Consensus 135 ~~~l~~iP~l-----~V~~Psd~~e~~~~l~~A~~--~~~Pv~i~ 172 (338)
T 1qs0_B 135 EAMFTQVCGL-----RTVMPSNPYDAKGLLIASIE--CDDPVIFL 172 (338)
T ss_dssp HHHHTTSTTC-----EEECCCSHHHHHHHHHHHHH--SSSCEEEE
T ss_pred HHHHhcCCCC-----EEEeeCCHHHHHHHHHHHHh--cCCcEEEE
Confidence 5444433366 88888999999999999996 58999983
No 123
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=61.61 E-value=11 Score=36.76 Aligned_cols=109 Identities=19% Similarity=0.227 Sum_probs=67.9
Q ss_pred CEEEeCcccchhchHHHHHHHHHHhCCCeEEccC--CccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCC
Q 007917 238 PVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS--GKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFND 315 (585)
Q Consensus 238 pvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~--gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~ 315 (585)
.++-.|.|....+..+.+++||+.||+-|-+|-. -.|.+|.++ .+|.. |. .=.+++.|.+|-+=.-
T Consensus 194 ivVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~~~--QVGqT-Gk---------~V~P~lYiA~GISGAi 261 (307)
T 1efp_A 194 RVVSGGRGLGSKESFAIIEELADKLGAAVGASRAAVDSGYAPNDW--QVGQT-GK---------VVAPELYVAVGISGAI 261 (307)
T ss_dssp EEEEECGGGCSSSTTHHHHHHHHHHTCEEEECHHHHHTTSSCGGG--BBSSS-SB---------CCCCSEEEEESCCCCH
T ss_pred EEEEcCCcCCCHHHHHHHHHHHHHhCCceeecHHHHhCCCCChhh--EeccC-Cc---------ccCCceEEEEeccCcH
Confidence 3555566666656678999999999999988743 236666544 45552 31 1268999999965322
Q ss_pred cccccccccCCCcceEEEcCCceee-cCCCcccc-ccHHHHHHHHHHH
Q 007917 316 YSSVGYSLLIKKEKAIIVQPHRVTV-GNGPSLGW-VFMADFLSALAKK 361 (585)
Q Consensus 316 ~~~~~~~~~~~~~~~i~id~~~~~~-~~~~~~~~-~~~~~~l~~L~~~ 361 (585)
....++. ....+|-||.|+... -....|+. .|+..++.+|.++
T Consensus 262 QHlaGm~---~s~~IVAIN~D~~ApIF~~ADygiVgDl~~v~P~L~~~ 306 (307)
T 1efp_A 262 QHLAGMK---DSKVIVAINKDEEAPIFQIADYGLVGDLFSVVPELTGK 306 (307)
T ss_dssp HHHTTTT---TCSEEEEEESCTTCGGGGTCSEEEESCHHHHHHHHHHT
T ss_pred HHHhhhc---cCCEEEEEeCCCCCCcccccCeEEeeeHHHHHHHHHhh
Confidence 2222322 233577888887631 11223333 3889999998875
No 124
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=60.21 E-value=13 Score=41.53 Aligned_cols=82 Identities=21% Similarity=0.034 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHHhcC--CCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHH
Q 007917 220 GLEAAVEATADFLNKAV--KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCG 297 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~a~--rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~ 297 (585)
..+++++.+++.|++.+ ...++.|.... .+..-.+.+|++.+|.+.+... ++.. +.. . +..+. . .
T Consensus 321 SWdeAl~~ia~~L~~i~~~~i~~~~s~~~t-~E~~~~~~kl~~~lGt~n~d~~-~~~~----~~~-~----~~~~~-~-~ 387 (783)
T 3i9v_3 321 TWEEAFLALKEGLKEARGEEVGLYLAHDAT-LEEGLLASELAKALKTPHLDFQ-GRTA----APA-S----LFPPA-S-L 387 (783)
T ss_dssp CHHHHHHHHHHHHHTCCTTSEEEEECTTCC-TTHHHHHHHHHHHTTCSCEEET-TCCS----SCG-G----GSCBC-C-H
T ss_pred CHHHHHHHHHHHHHhhccCCEEEEECCCCC-HHHHHHHHHHHHHhCCCcccCC-chhh----hhh-c----cCCCC-C-H
Confidence 46788999999998764 34555554443 2455678999999998877543 2211 000 0 11111 1 2
Q ss_pred HHhhhCCEEEEeCCccCC
Q 007917 298 EIVESADAYVFVGPIFND 315 (585)
Q Consensus 298 ~~l~~aD~vl~lG~~~~~ 315 (585)
.-++++|+||++| .+.+
T Consensus 388 ~di~~ad~Il~~G-Np~~ 404 (783)
T 3i9v_3 388 EDLLQADFALVLG-DPTE 404 (783)
T ss_dssp HHHHHCSCEEEES-CHHH
T ss_pred HHHhhCCEEEEeC-ChhH
Confidence 3457999999999 7543
No 125
>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*
Probab=60.00 E-value=5.7 Score=44.03 Aligned_cols=116 Identities=15% Similarity=0.111 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHHhc------CCCEEEeCcccchhchHHHHHHHHH-HhCCCeEEccCCccCCCC--CCCCceeeecCC
Q 007917 220 GLEAAVEATADFLNKA------VKPVLVGGPNIRVAKAQKAFIELAD-ATGYPIAIMPSGKGLVPE--HHPHFIGTYWGA 290 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~a------~rpvIi~G~g~~~~~a~~~l~~lae-~l~~Pv~~t~~gkg~~~~--~hp~~~G~~~g~ 290 (585)
..+++++.+++.|++. +...++.|.+....+..-.+.+|++ .+|.+-+.+.......+. .....+|. +.
T Consensus 79 sWdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~e~~~~~~~~~~~~~Gs~n~~~~~~~c~~~~~~~~~~~~G~--~~ 156 (715)
T 2iv2_X 79 SWDEALNYVAERLSAIKEKYGPDAIQTTGSSRGTGNETNYVMQKFARAVIGTNNVDCCARVXHGPSVAGLHQSVGN--GA 156 (715)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCGGGEEEECCSSTTCHHHHHHHHHHHHHTTCCCCEECSSCCSCCSSSCSHHHHHSC--CS
T ss_pred eHHHHHHHHHHHHHHHHHhhCCCeEEEEecCCCcCcHHHHHHHHHHHHhcCCCcCCCCCccchhHHHHHHHhhcCC--CC
Confidence 3577888888888764 2333444444331234456789998 899886664322111111 11112231 11
Q ss_pred CCCHHHHHHhhhCCEEEEeCCccCCcccccccc----cCCCcceEEEcCCcee
Q 007917 291 VSSSFCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVT 339 (585)
Q Consensus 291 ~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~~~~~ 339 (585)
... ...-++++|+||++|+.+.+.....+.. ..++.++|.||+....
T Consensus 157 ~~~--~~~di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~G~klividPr~t~ 207 (715)
T 2iv2_X 157 MSN--AINEIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIE 207 (715)
T ss_dssp CSS--CGGGGGGCSEEEEESCCHHHHCHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred CCC--CHhHHhcCCEEEEEcCChHHhCHHHHHHHHHHHHCCCeEEEEcCCCCc
Confidence 111 1123689999999998754333211111 1245689999987543
No 126
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=58.70 E-value=33 Score=30.21 Aligned_cols=88 Identities=18% Similarity=0.057 Sum_probs=53.1
Q ss_pred CcccHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC---CCCeEEecCchhhHHHhhhhhhhhcCc--cEEEEeCCc
Q 007917 25 SVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE---PELNLVGCCNELNAGYAADGYARSRGV--GACVVTFTV 99 (585)
Q Consensus 25 ~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~---~~i~~i~~~~E~~A~~~A~gyar~tg~--~v~~~t~Gp 99 (585)
.....++.+++++...|+=|+||. |..-.-..+++.+. ++..-+. + ....+.. .+++.++|
T Consensus 23 ~I~~AA~llaqai~~~g~IyvfG~-Ghs~~~~~e~~~~~e~l~~~~~~~---~---------~~~i~~~D~vii~S~Sg- 88 (170)
T 3jx9_A 23 ELFDVVRLLAQALVGQGKVYLDAY-GEFEGLYPMLSDGPDQMKRVTKIK---D---------HKTLHAVDRVLIFTPDT- 88 (170)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEC-GGGGGGTHHHHTSTTCCTTEEECC---T---------TCCCCTTCEEEEEESCS-
T ss_pred HHHHHHHHHHHHHhCCCEEEEECC-CcHHHHHHHHHcccCCccchhhhh---h---------cCCCCCCCEEEEEeCCC-
Confidence 345678999999999999999996 54433333445433 2222221 1 1133333 33333444
Q ss_pred chHH-HHHHHHHhhhcCCcEEEEeCCCCC
Q 007917 100 GGLS-VLNAIAGAYSENLPVICIVGGPNS 127 (585)
Q Consensus 100 G~~n-~~~gl~~A~~~~~Pll~I~g~~~~ 127 (585)
-.. .+--...|...++|+|+||.....
T Consensus 89 -~n~~~ie~A~~ake~G~~vIaITs~~~~ 116 (170)
T 3jx9_A 89 -ERSDLLASLARYDAWHTPYSIITLGDVT 116 (170)
T ss_dssp -CCHHHHHHHHHHHHHTCCEEEEESSCCC
T ss_pred -CCHHHHHHHHHHHHCCCcEEEEeCcchh
Confidence 333 566666789999999999994333
No 127
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=54.44 E-value=46 Score=29.22 Aligned_cols=98 Identities=17% Similarity=0.097 Sum_probs=55.1
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHHHHHh--h-----hcCCCCeEEecCchhhH---HHhhhhh--------hh-hc
Q 007917 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDH--L-----IAEPELNLVGCCNELNA---GYAADGY--------AR-SR 88 (585)
Q Consensus 28 ~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~a--l-----~~~~~i~~i~~~~E~~A---~~~A~gy--------ar-~t 88 (585)
..++.+++.|.+.+-=++||+-++......-+ | ....+++.+....+.+- ..-..+| .. .+
T Consensus 30 ~~~~~i~~~l~~~~~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (188)
T 1tk9_A 30 KVGELLCECLKKGGKILICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQVEALGN 109 (188)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHHHTCGGGHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHHhhhhccCCCCCceEeccCCchhHhhhhcCCCHHHHHHHHHHHhCC
Confidence 45566667777787667777755543333222 1 11235665554322221 1111121 22 23
Q ss_pred CccEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCC
Q 007917 89 GVGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGP 125 (585)
Q Consensus 89 g~~v~~~t~GpG-~~n~~~gl~~A~~~~~Pll~I~g~~ 125 (585)
..-++++.|-.| ..+.+..+..|...+.++|.||+..
T Consensus 110 ~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~ 147 (188)
T 1tk9_A 110 EKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKG 147 (188)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGG
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 335555555555 4568888888999999999999864
No 128
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=53.35 E-value=49 Score=29.77 Aligned_cols=102 Identities=19% Similarity=0.205 Sum_probs=61.8
Q ss_pred ccHHHHHHHHHHHcCCCEEEecCCCChHHHHH--hhhc-----CCCCeEEecCchhh---HHHhhhhh----hh-----h
Q 007917 27 GTLGRHLARRLVEIGAKDVFSVPGDFNLTLLD--HLIA-----EPELNLVGCCNELN---AGYAADGY----AR-----S 87 (585)
Q Consensus 27 ~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~--al~~-----~~~i~~i~~~~E~~---A~~~A~gy----ar-----~ 87 (585)
-..++.|++.|++.|-=++||+-++....... .|.. +.+++.+....+.. |..-..|| ++ .
T Consensus 33 ~~a~~~i~~al~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~r~g~~~~~~~~d~~~~~a~~~d~~~~~~~~~~l~~~~ 112 (201)
T 3trj_A 33 AQAAKAMVSCLENGGKVLVCGNGSSGVIAQHFTSKLLNHFEMERPPLPAIALTGDVATITAVGNHYGFSQIFAKQVAALG 112 (201)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHC-------CCCEEETTSCHHHHHHHHHHTCGGGTTHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhcCccCCCCCCCceEEccCChHHHHHhccCCCHHHHHHHHHHhhC
Confidence 35667788888888999999986665443222 2332 24677666542322 11111222 21 2
Q ss_pred cCccEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCCCCc
Q 007917 88 RGVGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNSN 128 (585)
Q Consensus 88 tg~~v~~~t~GpG-~~n~~~gl~~A~~~~~Pll~I~g~~~~~ 128 (585)
+..-++++.|..| ..+.+..+..|...++|+|.||+.....
T Consensus 113 ~~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~ 154 (201)
T 3trj_A 113 NEDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGA 154 (201)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCCG
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCH
Confidence 3234555555555 5568888889999999999999976544
No 129
>2ivf_A Ethylbenzene dehydrogenase alpha-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=52.00 E-value=2.4 Score=48.92 Aligned_cols=116 Identities=12% Similarity=0.010 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHhc------CCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCC
Q 007917 220 GLEAAVEATADFLNKA------VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSS 293 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~a------~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~ 293 (585)
..+++++.+++.|.+. ++..++.|.+.........+.+|+..+|-+.+.....-+......+..+|. +....
T Consensus 162 SWdeAl~~IA~~l~~i~~~~Gp~~i~~~~~~~~~~~~~~~~~~rf~~~lG~~n~~~~~~~~~~~~a~~~~~G~--~~~~~ 239 (976)
T 2ivf_A 162 SWDEAAGDIADSIIDSFEAQGSDGFILDAPHVHAGSIAWGAGFRMTYLMDGVSPDINVDIGDTYMGAFHTFGK--MHMGY 239 (976)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGGEEECCCCSTTCHHHHHHHHHHHHHHTCBEECHHHHHTCCCHHHHHHHSC--CCCBC
T ss_pred cHHHHHHHHHHHHHHHHHHhCCceEEEEecCCccchHHHHHHHHHHHHhCCcccCccccccchhhhhhheecC--CCCCC
Confidence 4577888888877653 344444444433222235678999999987665221111111111222232 10111
Q ss_pred HHHHHHhhhCCEEEEeCCccCCccccccccc----CCCcceEEEcCCcee
Q 007917 294 SFCGEIVESADAYVFVGPIFNDYSSVGYSLL----IKKEKAIIVQPHRVT 339 (585)
Q Consensus 294 ~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~----~~~~~~i~id~~~~~ 339 (585)
...-+.+||+||++|+...+.....+..+ .++.|+|.||+....
T Consensus 240 --~~~D~~nad~Il~~G~N~~~~~p~~~~~~~~ar~~GakvivVDPr~t~ 287 (976)
T 2ivf_A 240 --SADNLLDAELIFMTCSNWSYTYPSSYHFLSEARYKGAEVVVIAPDFNP 287 (976)
T ss_dssp --CGGGGGGCSEEEEESCCHHHHCTTTHHHHHHHHHHTCEEEEECSSCCT
T ss_pred --ChhhHhhCcEEEEeCCChhHcccHHHHHHHHHHHcCCEEEEECCCCCc
Confidence 11236799999999987654333222211 135689999987653
No 130
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=51.06 E-value=76 Score=27.99 Aligned_cols=100 Identities=11% Similarity=0.056 Sum_probs=54.6
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHHHHHh--hh-----cCCCCeEEecCchhhH---HHh--------hhhhhh-hc
Q 007917 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDH--LI-----AEPELNLVGCCNELNA---GYA--------ADGYAR-SR 88 (585)
Q Consensus 28 ~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~a--l~-----~~~~i~~i~~~~E~~A---~~~--------A~gyar-~t 88 (585)
..++.|++.+.+.+-=++||+-++......-+ |. ...+++.+....+.+- ..- ...+.. .+
T Consensus 36 ~~~~~i~~~i~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (198)
T 2xbl_A 36 KVADACIASIAQGGKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLPAVALTTDTSILTAIGNDYGYEKLFSRQVQALGN 115 (198)
T ss_dssp HHHHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHSCSSSCCCCCCEEETTCCHHHHHHHHHHHCGGGTTHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCEEEEEeCcHhhHHHHHHHHHHHhhhccCCCCCceEEecCChHHHHHhhccCCHHHHHHHHHHhhCC
Confidence 34555666667776556666654443332221 11 1235666655322221 111 112222 23
Q ss_pred CccEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCCCC
Q 007917 89 GVGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNS 127 (585)
Q Consensus 89 g~~v~~~t~GpG-~~n~~~gl~~A~~~~~Pll~I~g~~~~ 127 (585)
..-++++.|-.| ..+.+..+..|...+.++|.||+....
T Consensus 116 ~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~s 155 (198)
T 2xbl_A 116 EGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGG 155 (198)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCCC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 335566555555 456788888899999999999997543
No 131
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=50.87 E-value=36 Score=33.32 Aligned_cols=94 Identities=15% Similarity=0.139 Sum_probs=57.8
Q ss_pred hHHHHHHHhhhcCCCcEEEE-EcCchhH---hHHH-HHH--------hCCCeEEEEEeCCceeeeeeecCCCCCCCCCCC
Q 007917 444 SVGATLGYAQAAKDKRVIAC-IGDGSFQ---EIST-MIR--------CGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWD 510 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v-~GDGsf~---eL~t-a~~--------~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d 510 (585)
.++.|.|++++. -++++.+ .++.... .|.. +.. .++|+++++- .+++.. ++... ..-|
T Consensus 63 ~v~~a~G~A~~G-~~p~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~--~g~~~~----~g~~h--s~~~ 133 (324)
T 1umd_B 63 IVGAALGMAAHG-LRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMP--SGGGVR----GGHHH--SQSP 133 (324)
T ss_dssp HHHHHHHHHHHT-CEEEEECSSGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEEEE--ECSSSS----CGGGS--SCCC
T ss_pred HHHHHHHHHHCC-CEEEEEeccHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEEEc--CCCCCC----CCCcc--chhH
Confidence 466788888863 3555554 7776533 3322 221 6888877765 333321 11111 1123
Q ss_pred HHHHHHHh-cCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEE
Q 007917 511 YTGLVNAI-HNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFI 554 (585)
Q Consensus 511 ~~~la~a~-G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vI 554 (585)
. .+.+.+ |. ..+...|+.|....++++++ .++|++|
T Consensus 134 ~-a~~~~iP~~-----~V~~P~d~~e~~~~l~~a~~--~~~Pv~i 170 (324)
T 1umd_B 134 E-AHFVHTAGL-----KVVAVSTPYDAKGLLKAAIR--DEDPVVF 170 (324)
T ss_dssp H-HHHHTSTTC-----EEEECCSHHHHHHHHHHHHH--CSSCEEE
T ss_pred H-HHHhcCCCC-----EEEEeCCHHHHHHHHHHHHh--cCCCEEE
Confidence 3 444544 44 78888999999999999996 7899988
No 132
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=50.62 E-value=42 Score=25.87 Aligned_cols=67 Identities=13% Similarity=0.234 Sum_probs=39.9
Q ss_pred EEEEEcCchhH--hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEecCHHHHH
Q 007917 460 VIACIGDGSFQ--EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELT 537 (585)
Q Consensus 460 vv~v~GDGsf~--eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~~~~eL~ 537 (585)
|++++.|--.. .+--....+..++|||.+...-.. -.|..-.+--|. +...|+++++++
T Consensus 54 vvvvvddkewaekairfvkslgaqvliiiydqdqnrl--------------eefsrevrrrgf-----evrtvtspddfk 114 (134)
T 2l69_A 54 VVVVVDDKEWAEKAIRFVKSLGAQVLIIIYDQDQNRL--------------EEFSREVRRRGF-----EVRTVTSPDDFK 114 (134)
T ss_dssp EEEECSSHHHHHHHHHHHHHHCCCCEEEEECSCHHHH--------------HHHHHHHHHTTC-----CEEEESSHHHHH
T ss_pred EEEEEccHHHHHHHHHHHHhcCCeEEEEEEeCchhHH--------------HHHHHHHHhcCc-----eEEEecChHHHH
Confidence 44444454444 333334455555655554432221 135555566676 788899999999
Q ss_pred HHHHHhhh
Q 007917 538 EAMKTATG 545 (585)
Q Consensus 538 ~al~~a~~ 545 (585)
..|++.+.
T Consensus 115 kslerlir 122 (134)
T 2l69_A 115 KSLERLIR 122 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998764
No 133
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=48.65 E-value=8.8 Score=37.22 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=31.1
Q ss_pred HHHHHhhhCCEEEEeCCccCCccccccccc--CCCcceEEEcCCceee
Q 007917 295 FCGEIVESADAYVFVGPIFNDYSSVGYSLL--IKKEKAIIVQPHRVTV 340 (585)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~--~~~~~~i~id~~~~~~ 340 (585)
.+.+.+.+||++|++|+++.-+.-..+-.. ..+.++|.|+.++...
T Consensus 209 ~a~~~~~~aDllLviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~ 256 (290)
T 3u31_A 209 EAEEEIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINISKTYI 256 (290)
T ss_dssp HHHHHHHHCSEEEEESCCSCSHHHHHHHHHHHHTTCCEEEEESSCCTT
T ss_pred HHHHHHhcCCEEEEECcCCcchhHHHHHHHHHHcCCEEEEECCCCCCC
Confidence 455677899999999999865443222211 2456789999887654
No 134
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=47.61 E-value=19 Score=28.95 Aligned_cols=33 Identities=12% Similarity=0.118 Sum_probs=28.4
Q ss_pred CCCEEEeCcccchhchHHHHHHHHHHhCCCeEE
Q 007917 236 VKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (585)
Q Consensus 236 ~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~ 268 (585)
+|.++++|.|...+-..+.+++.++..|+++-.
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i 36 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVII 36 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEE
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCCeEE
Confidence 468899999998887788999999999998644
No 135
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=47.45 E-value=58 Score=28.92 Aligned_cols=98 Identities=17% Similarity=0.198 Sum_probs=55.0
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHH--HHHhhh-----cCCCCeEEecCchhhHHHh----hhhh---------hhh
Q 007917 28 TLGRHLARRLVEIGAKDVFSVPGDFNLT--LLDHLI-----AEPELNLVGCCNELNAGYA----ADGY---------ARS 87 (585)
Q Consensus 28 ~~a~~i~~~L~~~Gv~~vFg~PG~~~~~--l~~al~-----~~~~i~~i~~~~E~~A~~~----A~gy---------ar~ 87 (585)
...+.+++.|.+.+-=++||+-++.... +...|. ...+++.+......+ .+. -.+| ...
T Consensus 33 ~~~~~i~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~ 111 (199)
T 1x92_A 33 QASLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALTTDSS-TITSIANDYSYNEVFSKQIRALG 111 (199)
T ss_dssp HHHHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHTCSSSCCCCCCEEETTCCHH-HHHHHHHHTCGGGTTHHHHHHHC
T ss_pred HHHHHHHHHHHCCCEEEEEcCchhHHHHHHHHHHHhcCcccCCCCCceEecCCChh-HHHHhhcCccHHHHHHHHHHhCC
Confidence 3456667888887655666664443222 122231 224666665432111 111 1122 122
Q ss_pred cCccEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCCC
Q 007917 88 RGVGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPN 126 (585)
Q Consensus 88 tg~~v~~~t~GpG-~~n~~~gl~~A~~~~~Pll~I~g~~~ 126 (585)
+..-++++.|..| ..+.+..+..|...++++|.||+...
T Consensus 112 ~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~ 151 (199)
T 1x92_A 112 QPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDG 151 (199)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 3335566555655 56688888899999999999999643
No 136
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=46.73 E-value=33 Score=33.62 Aligned_cols=94 Identities=14% Similarity=-0.000 Sum_probs=56.3
Q ss_pred hHHHHHHHhhhcCCCcEEEE-EcCchhH---hHHH-HHH--------hCCCeEEEEEeCCceeeeeeecCCCCCCCCCCC
Q 007917 444 SVGATLGYAQAAKDKRVIAC-IGDGSFQ---EIST-MIR--------CGQRSIIFLINNGGYTIEVEIHDGPYNVIKNWD 510 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v-~GDGsf~---eL~t-a~~--------~~lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d 510 (585)
.++.|+|++++ .-++++++ .++.... .|.. +.. .++|+++++- .+++.. ++... ..-|
T Consensus 62 ~v~~a~G~A~~-G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~--~g~~~~----~g~~h--s~~~ 132 (324)
T 1w85_B 62 IGGLAIGLALQ-GFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSP--FGGGVH----TPELH--SDSL 132 (324)
T ss_dssp HHHHHHHHHHT-TCEEEEBCSSGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEE--ECSSSC----CCTTS--SCCC
T ss_pred HHHHHHHHHhC-CCEEEEEecchhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEEEe--ccCCCC----CCCcc--cccH
Confidence 56778888886 34555544 6776533 3321 222 6888877653 333321 11111 1123
Q ss_pred HHHHHHHh-cCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEE
Q 007917 511 YTGLVNAI-HNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFI 554 (585)
Q Consensus 511 ~~~la~a~-G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vI 554 (585)
. .+.+++ |. ..+...|+.|....++.+++ .++|++|
T Consensus 133 ~-a~~~~iP~l-----~V~~Psd~~e~~~~l~~a~~--~~~Pv~i 169 (324)
T 1w85_B 133 E-GLVAQQPGL-----KVVIPSTPYDAKGLLISAIR--DNDPVIF 169 (324)
T ss_dssp H-HHHTTSTTC-----EEECCSSHHHHHHHHHHHHH--SSSCEEE
T ss_pred H-HHHccCCCC-----EEEeeCCHHHHHHHHHHHHH--cCCCEEE
Confidence 3 443433 44 67778899999999999996 7799998
No 137
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=46.16 E-value=29 Score=34.40 Aligned_cols=95 Identities=15% Similarity=0.035 Sum_probs=57.5
Q ss_pred hHHHHHHHhhhcCCCcEEEE-EcCchhH---hHH-HHH--Hh------CC-CeEEEEEeCCceeeeeeecCCCCCCCCCC
Q 007917 444 SVGATLGYAQAAKDKRVIAC-IGDGSFQ---EIS-TMI--RC------GQ-RSIIFLINNGGYTIEVEIHDGPYNVIKNW 509 (585)
Q Consensus 444 ~lpaAiGaalA~p~~~vv~v-~GDGsf~---eL~-ta~--~~------~l-pv~ivV~NN~~~~~~~~~~~~~~~~~~~~ 509 (585)
.++.|+|++++ .-++++.+ .+|+... .+. .+. ++ +. |+++++-. ++ +. ++.... ..-
T Consensus 79 ~v~~a~G~A~~-G~rp~~~~tf~~F~~~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~-~g-~~-----~G~th~-~~~ 149 (342)
T 2bfd_B 79 IVGFGIGIAVT-GATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPW-GC-VG-----HGALYH-SQS 149 (342)
T ss_dssp HHHHHHHHHHT-TCCEEEECSSGGGCGGGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEE-SC-CS-----SCGGGS-SCC
T ss_pred HHHHHHHHHHC-CCeeEEEecchhHHHHHHHHHHHHHHHHHhhhcCCccCCCEEEEEec-CC-CC-----CCcchh-hHh
Confidence 56778888886 34555544 7777544 232 222 22 44 88887553 22 21 221100 123
Q ss_pred CHHHHHHHh-cCCCCCccEEEecCHHHHHHHHHHhhhcCCCCeEEEE
Q 007917 510 DYTGLVNAI-HNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIE 555 (585)
Q Consensus 510 d~~~la~a~-G~~~~~~~~~~v~~~~eL~~al~~a~~~~~~gp~vIe 555 (585)
|..-+ +++ |. ..+...|+.|....++.+++ .++|++|-
T Consensus 150 d~~~l-~~iP~l-----~V~~Psd~~e~~~~l~~a~~--~~~Pv~i~ 188 (342)
T 2bfd_B 150 PEAFF-AHCPGI-----KVVIPRSPFQAKGLLLSCIE--DKNPCIFF 188 (342)
T ss_dssp CHHHH-HTSTTC-----EEECCSSHHHHHHHHHHHHH--SSSCEEEE
T ss_pred HHHHH-hcCCCc-----EEEeeCCHHHHHHHHHHHHh--cCCcEEEE
Confidence 54444 444 55 78888999999999999996 58999983
No 138
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=44.99 E-value=29 Score=28.01 Aligned_cols=34 Identities=18% Similarity=0.063 Sum_probs=28.6
Q ss_pred CCCEEEeCcccchhchHHHHHHHHHHhCCCeEEc
Q 007917 236 VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (585)
Q Consensus 236 ~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t 269 (585)
.|.+++++.|...+-....+++.|+..|+++-..
T Consensus 7 mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~ 40 (108)
T 3nbm_A 7 LKVLVLCAGSGTSAQLANAINEGANLTEVRVIAN 40 (108)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEE
Confidence 4678999999887777899999999999997764
No 139
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=42.81 E-value=94 Score=27.38 Aligned_cols=100 Identities=11% Similarity=0.068 Sum_probs=58.7
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHHHH--Hhhhc-----CCCCeEEecCchhhHHH---hhhhh---------hhhc
Q 007917 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLL--DHLIA-----EPELNLVGCCNELNAGY---AADGY---------ARSR 88 (585)
Q Consensus 28 ~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~--~al~~-----~~~i~~i~~~~E~~A~~---~A~gy---------ar~t 88 (585)
...+.+++.+.+.+-=++||+-++...... ..+.. ..+++.+....+.+... --.+| ...+
T Consensus 29 ~~~~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~~~~ 108 (196)
T 2yva_A 29 RAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGH 108 (196)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTSTTGGGHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCEEEEEeCchhhHHHHHHHHHHhccccccCCCCceEeecCchHHHHHHhcCCCHHHHHHHHHHhcCC
Confidence 345778888888887778888554433221 12321 34666665543221110 11122 1223
Q ss_pred CccEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCCCC
Q 007917 89 GVGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNS 127 (585)
Q Consensus 89 g~~v~~~t~GpG-~~n~~~gl~~A~~~~~Pll~I~g~~~~ 127 (585)
..-++++.|..| ..+.+..+..|...++++|.||+....
T Consensus 109 ~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s 148 (196)
T 2yva_A 109 AGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGG 148 (196)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 335666555555 556888888999999999999997543
No 140
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=42.64 E-value=70 Score=26.39 Aligned_cols=87 Identities=17% Similarity=0.143 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhcCC--CEEEeCcccchh-----------chHHHHHHHHHHhCCCeEEcc---CCccCCCC-------
Q 007917 222 EAAVEATADFLNKAVK--PVLVGGPNIRVA-----------KAQKAFIELADATGYPIAIMP---SGKGLVPE------- 278 (585)
Q Consensus 222 ~~~~~~~~~~l~~a~r--pvIi~G~g~~~~-----------~a~~~l~~lae~l~~Pv~~t~---~gkg~~~~------- 278 (585)
...++-+..++..... -|++.+.|+... ...+.+++|++..|++++.-. ..+|+.++
T Consensus 18 ~~al~~a~a~~~~g~~v~~vff~~dGV~~~~~~~~p~~~~~~l~~~~~~L~~~~gv~l~vC~~~~~~RGl~~~~~~~~~~ 97 (130)
T 2hy5_A 18 DSAYQFAKAALEKGHEIFRVFFYHDGVNNSTRLTTPPQDDRHIVNRWAELAEQYELDMVVCVAAAQRRGIVDEGEASRNG 97 (130)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECGGGGGGGBSCCCCCTTSCCHHHHHHHHHHHHTCCEEEEHHHHHHHTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCeeCEEEEechHHHHHhcCCCCCcccCCHHHHHHHHHHHcCCeEEEeHHHHHHcCCChhhhhhhcc
Confidence 3344444444444332 478889988642 235678899888899988765 35677544
Q ss_pred --CCCCceeeecCCCCCHHHHHHhhhCCEEEEeC
Q 007917 279 --HHPHFIGTYWGAVSSSFCGEIVESADAYVFVG 310 (585)
Q Consensus 279 --~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG 310 (585)
.+.+..|.- ..+-....+.+.++|-||.+|
T Consensus 98 ~~~~~l~~g~~--i~~~~~l~~~~~~aD~vi~f~ 129 (130)
T 2hy5_A 98 KDATNIHPKFR--ISGLGQLVEAAIQADRLVVFG 129 (130)
T ss_dssp CSCCCBCTTCE--EECTHHHHHHHHHSSEEEEEC
T ss_pred cccccccCCeE--EeCHHHHHHHHHhCCEEEEeC
Confidence 113333421 123457788899999999997
No 141
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=40.45 E-value=1.1e+02 Score=28.07 Aligned_cols=85 Identities=15% Similarity=0.089 Sum_probs=49.4
Q ss_pred EEEEEcCchhH-hHHHHHHhCC--CeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEec-----
Q 007917 460 VIACIGDGSFQ-EISTMIRCGQ--RSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR----- 531 (585)
Q Consensus 460 vv~v~GDGsf~-eL~ta~~~~l--pv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~----- 531 (585)
+|.+.|-|+++ .|..+.+.++ .|..||-|+..+ -.+.|+.+|+ +.+.++
T Consensus 16 ~vl~SG~gsnl~all~~~~~~~~~eI~~Vis~~~a~------------------~~~~A~~~gI-----p~~~~~~~~~~ 72 (215)
T 3da8_A 16 VVLASGTGSLLRSLLDAAVGDYPARVVAVGVDRECR------------------AAEIAAEASV-----PVFTVRLADHP 72 (215)
T ss_dssp EEEESSCCHHHHHHHHHSSTTCSEEEEEEEESSCCH------------------HHHHHHHTTC-----CEEECCGGGSS
T ss_pred EEEEeCChHHHHHHHHHHhccCCCeEEEEEeCCchH------------------HHHHHHHcCC-----CEEEeCccccc
Confidence 45566999999 7776654344 444444443311 2578999999 777763
Q ss_pred CHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChHHHHH
Q 007917 532 SEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLE 569 (585)
Q Consensus 532 ~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~~~~~~~ 569 (585)
+.+++++.+.+.++ .-+|-+|-+.--..-.++.+.+
T Consensus 73 ~r~~~d~~~~~~l~--~~~~Dlivlagy~~iL~~~~l~ 108 (215)
T 3da8_A 73 SRDAWDVAITAATA--AHEPDLVVSAGFMRILGPQFLS 108 (215)
T ss_dssp SHHHHHHHHHHHHH--TTCCSEEEEEECCSCCCHHHHH
T ss_pred chhhhhHHHHHHHH--hhCCCEEEEcCchhhCCHHHHh
Confidence 24556666666664 4456555544434444544433
No 142
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=39.13 E-value=1e+02 Score=34.29 Aligned_cols=93 Identities=17% Similarity=0.181 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhcCCCEEEeCcccchh-chHHHHHHHHHHhCCCeEEccC-----C---ccCCCCCC-CCc----eeeec
Q 007917 223 AAVEATADFLNKAVKPVLVGGPNIRVA-KAQKAFIELADATGYPIAIMPS-----G---KGLVPEHH-PHF----IGTYW 288 (585)
Q Consensus 223 ~~~~~~~~~l~~a~rpvIi~G~g~~~~-~a~~~l~~lae~l~~Pv~~t~~-----g---kg~~~~~h-p~~----~G~~~ 288 (585)
+.++++++.|.++++++|+.|.|...+ .+......|+...|.-+..-.. | -|.+|... ..+ +..+.
T Consensus 488 e~i~~~A~~la~a~~~~I~~G~g~~~~~~~~~~~~~l~g~~G~g~~~l~~~~N~~Ga~~~G~~p~~~g~~~~~~gikal~ 567 (783)
T 3i9v_3 488 EMVAKAKEAWEKAKNPVLILGAGVLQDTVAAERARLLAERKGAKVLAMTPAANARGLEAMGVLPGAKGASWDEPGALYAY 567 (783)
T ss_dssp HHHHHHHHHHHHCSSCEEEECSHHHHCHHHHHHHHHHHHHTTCCEEECCSSTTHHHHHHHTCSCCSSCCCTTSCCCSEEE
T ss_pred HHHHHHHHHHHhCCCcEEEECchhhhcHHHHHHHHHHhcccCCCeeeccCcchhhhhhhcCCCCCchhhhhhcCCCeEEE
Confidence 457789999999999999999987653 2333444477888865543211 1 02333211 000 11111
Q ss_pred CCCCCHHHHHHhhhCCEEEEeCCccCCcc
Q 007917 289 GAVSSSFCGEIVESADAYVFVGPIFNDYS 317 (585)
Q Consensus 289 g~~~~~~~~~~l~~aD~vl~lG~~~~~~~ 317 (585)
-...++... |++.|++++++..+++..
T Consensus 568 v~g~np~~~--L~~~~fvVv~d~~~t~ta 594 (783)
T 3i9v_3 568 YGFVPPEEA--LKGKRFVVMHLSHLHPLA 594 (783)
T ss_dssp ESSCCCHHH--HTTCSEEEECCSSCCTTT
T ss_pred EeCCCHHHH--HhhCCEEEEEeCcCCchh
Confidence 122333322 889999999998776654
No 143
>4au1_A Precorrin-8X methylmutase; isomerase, HBA; HET: P8X; 1.45A {Rhodobacter capsulatus}
Probab=36.16 E-value=41 Score=31.07 Aligned_cols=53 Identities=21% Similarity=0.231 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhcC--CCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCcc
Q 007917 222 EAAVEATADFLNKAV--KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKG 274 (585)
Q Consensus 222 ~~~~~~~~~~l~~a~--rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg 274 (585)
+.++-++++++...+ ||.+|+|--+..-++.+.=.+|++..++|.++...-||
T Consensus 158 PTAL~~Lleli~~~~~~rPalVIG~PVGFVgAaESK~~L~~~~~vP~I~~~GrkG 212 (229)
T 4au1_A 158 PTALFHLLNMLEDPACPRPAAIIGCPVGFIGAAESKAALAVANPVPWVIVEGRLG 212 (229)
T ss_dssp HHHHHHHHHHTTSTTSCCCSEEEECCCCSSSHHHHHHHHHHHCCSSEEEECSSCC
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEcCCCccChHHHHHHHHhCCCCCEEEEecCCC
Confidence 346778889887543 89999998887666766666777778899998655443
No 144
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=36.04 E-value=60 Score=28.93 Aligned_cols=47 Identities=17% Similarity=0.250 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEc
Q 007917 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (585)
Q Consensus 222 ~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t 269 (585)
.+.+++++++|.++++-++++|.|.... ....+.....++|.|+..-
T Consensus 31 ~~~i~~~~~~i~~a~~~I~i~G~G~S~~-~A~~~~~~l~~~g~~~~~~ 77 (201)
T 3fxa_A 31 EEALVKTVEKIAECTGKIVVAGCGTSGV-AAKKLVHSFNCIERPAVFL 77 (201)
T ss_dssp HHHHHHHHHHHHHCSSCEEEECCTHHHH-HHHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHHHHHhcCCcEEEEEecHHHH-HHHHHHHHHHhcCCcEEEe
Confidence 4678999999999976789999887653 3444444445688888763
No 145
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=34.90 E-value=1.5e+02 Score=27.03 Aligned_cols=85 Identities=13% Similarity=0.042 Sum_probs=49.3
Q ss_pred cEEEEEcCchhH-hHHHHHHhCCC--eEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEec----
Q 007917 459 RVIACIGDGSFQ-EISTMIRCGQR--SIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR---- 531 (585)
Q Consensus 459 ~vv~v~GDGsf~-eL~ta~~~~lp--v~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~---- 531 (585)
-+|.+.|.|+.+ .|..+.+.+++ |..||-|+..- .-.+.|+.+|+ +.+.+.
T Consensus 8 iavl~SG~Gsnl~all~~~~~~~~~eI~~Vis~~~~a-----------------~~~~~A~~~gI-----p~~~~~~~~~ 65 (215)
T 3tqr_A 8 IVVLISGNGTNLQAIIGAIQKGLAIEIRAVISNRADA-----------------YGLKRAQQADI-----PTHIIPHEEF 65 (215)
T ss_dssp EEEEESSCCHHHHHHHHHHHTTCSEEEEEEEESCTTC-----------------HHHHHHHHTTC-----CEEECCGGGS
T ss_pred EEEEEeCCcHHHHHHHHHHHcCCCCEEEEEEeCCcch-----------------HHHHHHHHcCC-----CEEEeCcccc
Confidence 356677999999 88888775554 44455554310 11467999998 676653
Q ss_pred -CHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChHHH
Q 007917 532 -SEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKEL 567 (585)
Q Consensus 532 -~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~~~~~ 567 (585)
+.++.++.+.+.++ .-+|-+|-+.--..-.++.+
T Consensus 66 ~~r~~~d~~~~~~l~--~~~~Dliv~agy~~il~~~~ 100 (215)
T 3tqr_A 66 PSRTDFESTLQKTID--HYDPKLIVLAGFMRKLGKAF 100 (215)
T ss_dssp SSHHHHHHHHHHHHH--TTCCSEEEESSCCSCCCHHH
T ss_pred CchhHhHHHHHHHHH--hcCCCEEEEccchhhCCHHH
Confidence 34455556656654 44555554432233344433
No 146
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=34.36 E-value=33 Score=38.62 Aligned_cols=98 Identities=14% Similarity=0.022 Sum_probs=59.8
Q ss_pred cEEEEeCCcchH----HHHHHHHHhhhcCCc---EEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEec
Q 007917 91 GACVVTFTVGGL----SVLNAIAGAYSENLP---VICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN 163 (585)
Q Consensus 91 ~v~~~t~GpG~~----n~~~gl~~A~~~~~P---ll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~ 163 (585)
.++++..|=|+. +..-++.-|..-+.| +|+|.-+.... ..+.... ....... .+.++.+--...+|.
T Consensus 278 ~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g-~st~~~~--~~s~~~~---~~~a~a~G~p~~~Vd 351 (868)
T 2yic_A 278 VVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIG-FTTAPTD--SRSSEYC---TDVAKMIGAPIFHVN 351 (868)
T ss_dssp EEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCB-TTBCHHH--HCSSSST---TGGGGGGTCCEEEEE
T ss_pred ceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCcc-cccCccc--cccccCH---HHHHHhCCCcEEEEe
Confidence 688888888873 455556667778898 99998765322 1111000 0000111 123333322233443
Q ss_pred --CcchhHHHHHHHHHHhhhcCCcEEEEecCCC
Q 007917 164 --NLGDAHELIDTAISTALKESKPVYISISCNL 194 (585)
Q Consensus 164 --~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (585)
+++++...+++|++.+....|||.|++-.--
T Consensus 352 G~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR 384 (868)
T 2yic_A 352 GDDPEACAWVARLAVDFRQAFKKDVVIDMLCYR 384 (868)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeec
Confidence 7888889999999888888899999986553
No 147
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=33.51 E-value=3e+02 Score=25.58 Aligned_cols=150 Identities=9% Similarity=-0.065 Sum_probs=77.7
Q ss_pred CCcccHHHHHHHHHHHcC--CCEEEecCCCC--------hHHHHHhhhcCCCCeEEecC--chhhHHH-hhhhhhhhcCc
Q 007917 24 ASVGTLGRHLARRLVEIG--AKDVFSVPGDF--------NLTLLDHLIAEPELNLVGCC--NELNAGY-AADGYARSRGV 90 (585)
Q Consensus 24 ~~~~~~a~~i~~~L~~~G--v~~vFg~PG~~--------~~~l~~al~~~~~i~~i~~~--~E~~A~~-~A~gyar~tg~ 90 (585)
.+-..++..+++.|.+.| -+.|..+-|.. ...+.+++.+. +++++... .....++ ++.-+-+....
T Consensus 110 ~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (297)
T 3rot_A 110 SDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGIKTILQDK-GIFFEELDVGTDPNQVQSRVKSYFKIHPE 188 (297)
T ss_dssp CCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHHHHHHHHT-TCEEEEEECCSCHHHHHHHHHHHHHHCTT
T ss_pred cChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhc-CCeEEEeecCCChHHHHHHHHHHHHhCCC
Confidence 444667889999999999 88777665542 23466677665 66655332 2222222 22222222334
Q ss_pred -cEEEEeCCcchHHHHHHHHHhhh----cCCcEEEEeCCCCCccCCCccceeeccCCCChHHH-HHHhhhceeEEEEecC
Q 007917 91 -GACVVTFTVGGLSVLNAIAGAYS----ENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQE-LRCFQAITCSQAVVNN 164 (585)
Q Consensus 91 -~v~~~t~GpG~~n~~~gl~~A~~----~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~k~~~~v~~ 164 (585)
-++++.....+..++.++.++-. ..+.++-+-+. ... ..+.......+.. .+
T Consensus 189 ~~ai~~~~d~~A~g~~~al~~~g~~vP~~dv~vig~D~~---------------------~~~~~~i~~~~~lttv~-~~ 246 (297)
T 3rot_A 189 TNIIFCLTSQALDPLGQMLLHPDRYDFNYQPQVYSFDKT---------------------PNTVSLIHKKLVNYVMD-QQ 246 (297)
T ss_dssp CCEEEESSHHHHHHHHHHHHSHHHHTCCCCCEEEEECCC---------------------HHHHHHHHTTSCCEEEC-CC
T ss_pred CCEEEEcCCcchHHHHHHHHhcCCccCCCceEEEEeCCC---------------------HHHHHHHHcCCceEEEe-cC
Confidence 67777777666667777766654 23433332111 111 2223222222222 23
Q ss_pred cchh-HHHHHHHHHHhhhcCCcEEEEecCCCCC
Q 007917 165 LGDA-HELIDTAISTALKESKPVYISISCNLPG 196 (585)
Q Consensus 165 ~~~~-~~~l~~A~~~a~~~~gPV~i~iP~dv~~ 196 (585)
+.++ ...++.+++.......|-.+.+|.++..
T Consensus 247 ~~~~g~~av~~l~~~i~g~~~~~~i~~~~~~~~ 279 (297)
T 3rot_A 247 PFLMGYLSITQLVLMNRYQLNPVNINTAMAENL 279 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCCEECCC----
T ss_pred hHHHHHHHHHHHHHHHhCCCCCcccccCceEEe
Confidence 3333 4455555555555567888999988854
No 148
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=33.25 E-value=2.9e+02 Score=25.40 Aligned_cols=91 Identities=19% Similarity=0.207 Sum_probs=52.9
Q ss_pred CCcccHHHHHHHHHHH--cCCCEEEecCCCC--------hHHHHHhhhcCCCCeEEec------CchhhHHH-hhhhhhh
Q 007917 24 ASVGTLGRHLARRLVE--IGAKDVFSVPGDF--------NLTLLDHLIAEPELNLVGC------CNELNAGY-AADGYAR 86 (585)
Q Consensus 24 ~~~~~~a~~i~~~L~~--~Gv~~vFg~PG~~--------~~~l~~al~~~~~i~~i~~------~~E~~A~~-~A~gyar 86 (585)
.+-..++..+++.|.+ .|-++|.-+-|.. ...+.+++.+.++++++.. ......++ ++.-+-+
T Consensus 105 ~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 184 (291)
T 3l49_A 105 SNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLT 184 (291)
T ss_dssp ECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHH
Confidence 3445678889999999 8999887776542 2345666766555654321 11222222 2222223
Q ss_pred hcC---c-cEEEEeCCcchHHHHHHHHHhhhc
Q 007917 87 SRG---V-GACVVTFTVGGLSVLNAIAGAYSE 114 (585)
Q Consensus 87 ~tg---~-~v~~~t~GpG~~n~~~gl~~A~~~ 114 (585)
... . -++++.++..+..++.++.++-..
T Consensus 185 ~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 216 (291)
T 3l49_A 185 KYPNEGDVGAIWACWDVPMIGATQALQAAGRT 216 (291)
T ss_dssp HCCSTTSCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred hCCCcCCcCEEEECCCchHHHHHHHHHHcCCC
Confidence 333 5 667777776666677777665444
No 149
>2keg_A PLNK; protein, peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2keh_A
Probab=31.92 E-value=17 Score=21.07 Aligned_cols=14 Identities=29% Similarity=0.743 Sum_probs=10.9
Q ss_pred ccccchHHHHHHHh
Q 007917 439 GSIGWSVGATLGYA 452 (585)
Q Consensus 439 g~mG~~lpaAiGaa 452 (585)
.+|||+++.|.|+-
T Consensus 6 ngigyaigyafgav 19 (32)
T 2keg_A 6 NGIGYAIGYAFGAV 19 (32)
T ss_dssp SSSHHHHHHHHHHH
T ss_pred cCcceeehhhhhHH
Confidence 46888888888863
No 150
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=31.77 E-value=41 Score=39.07 Aligned_cols=98 Identities=14% Similarity=0.004 Sum_probs=60.9
Q ss_pred cEEEEeCCcchH----HHHHHHHHhhhcCCc---EEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhhceeEEEEec
Q 007917 91 GACVVTFTVGGL----SVLNAIAGAYSENLP---VICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVN 163 (585)
Q Consensus 91 ~v~~~t~GpG~~----n~~~gl~~A~~~~~P---ll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~k~~~~v~ 163 (585)
.++++..|=|+. ...-++.-|..-+.| +|+|.-+..... ....- +....... .+.++.+--...++.
T Consensus 523 ~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gi-st~~~--~~~s~~~~---~~~a~a~G~p~~~Vd 596 (1113)
T 2xt6_A 523 VVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGF-TTAPT--DSRSSEYC---TDVAKMIGAPIFHVN 596 (1113)
T ss_dssp EEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBT-TBCHH--HHCSSSST---TGGGGGGTCCEEEEE
T ss_pred cEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCccc-ccCcc--ccccccCH---HHHHHhcCCcEEEEc
Confidence 678888888873 455666667778888 999987653321 11000 00000111 123444322334555
Q ss_pred --CcchhHHHHHHHHHHhhhcCCcEEEEecCCC
Q 007917 164 --NLGDAHELIDTAISTALKESKPVYISISCNL 194 (585)
Q Consensus 164 --~~~~~~~~l~~A~~~a~~~~gPV~i~iP~dv 194 (585)
+++.+...+++|++.+....|||.|++-.--
T Consensus 597 G~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR 629 (1113)
T 2xt6_A 597 GDDPEACAWVARLAVDFRQAFKKDVVIDMLCYR 629 (1113)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCC
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEc
Confidence 8888899999999988888899999986543
No 151
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=31.55 E-value=1.7e+02 Score=28.15 Aligned_cols=73 Identities=12% Similarity=0.148 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCC--CEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh
Q 007917 223 AAVEATADFLNKAVK--PVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (585)
Q Consensus 223 ~~~~~~~~~l~~a~r--pvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l 300 (585)
+.+.+++..|...++ -++++|..- .+.+.+.++|++.|.+.++.-.-.|.|-.-. ...+
T Consensus 60 e~L~~Aa~~I~~i~~~~~ILfVgTk~---~aq~aV~k~A~~tG~~yV~~RWlgGtLTN~~----------------t~~f 120 (305)
T 3iz6_A 60 EKLQLAARVIVAIENPQDIIVQSARP---YGQRAVLKFAQYTGAHAIAGRHTPGTFTNQL----------------QTSF 120 (305)
T ss_dssp HHHHHHHHHHHHTTSSCCEEEECCSH---HHHHHHHHHHHHHTCEEECSCCCTTTTTTTT----------------TSCS
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCcH---HHHHHHHHHHHHhCCccccCcccCCcccCcc----------------cccc
Confidence 457777777766543 478887543 4778999999999998886432223332110 0124
Q ss_pred hhCCEEEEeCCccC
Q 007917 301 ESADAYVFVGPIFN 314 (585)
Q Consensus 301 ~~aD~vl~lG~~~~ 314 (585)
.+.|+|+++..+-+
T Consensus 121 ~ePdllvV~Dp~~d 134 (305)
T 3iz6_A 121 SEPRLLILTDPRTD 134 (305)
T ss_dssp SCCSEEEESCTTTT
T ss_pred cCCceeEEeCcccc
Confidence 78999999987544
No 152
>1hi9_A Dciaa, dipeptide transport protein DPPA; hydrolase (protease), protease, D-aminopeptidase, decamer, SELF-compartmentalizing; 2.4A {Bacillus subtilis} SCOP: c.99.1.1
Probab=31.43 E-value=43 Score=31.93 Aligned_cols=132 Identities=20% Similarity=0.193 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCC--hHHHHHhhhcCCCCeEEecCc----------hhhHHHhhhhhhhhcCc-cEEEE
Q 007917 29 LGRHLARRLVEIGAKDVFSVPGDF--NLTLLDHLIAEPELNLVGCCN----------ELNAGYAADGYARSRGV-GACVV 95 (585)
Q Consensus 29 ~a~~i~~~L~~~Gv~~vFg~PG~~--~~~l~~al~~~~~i~~i~~~~----------E~~A~~~A~gyar~tg~-~v~~~ 95 (585)
-..+.++.+.+.|.+.|.-.-+.. ..=+.+.|. +..++|.... |.--+.+=.||.-..|. |++-=
T Consensus 38 evnAai~ga~~~Ga~eV~V~DsHg~~~NLl~e~L~--~ra~li~G~prp~~Mm~Gld~sfD~v~fiGYHa~AG~~gvLaH 115 (274)
T 1hi9_A 38 EANYCIAEAFNSGCTEVLVNDSHSKMNNLMVEKLH--PEADLISGDVKPFSMVEGLDDTFRGALFLGYHARASTPGVMSH 115 (274)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECSTTSCCSCTTTSC--TTSEEEEESCCTTGGGTTCCTTCSEEEEEEECCCTTSSSTTCC
T ss_pred HHHHHHHHHHHCCCeEEEEEccCCCcCCcChhHCC--cCeEEEeCCCCCcchhccccCCccEEEEeecCCCCCCCCccCC
Confidence 445568999999999999865443 233445553 4677776554 11112222344322222 43332
Q ss_pred eCCcc----------hHH-HHHHHHHhhhcCCcEEEEeCCCCCccCCCccceeeccCCCChHHHHHHh----------hh
Q 007917 96 TFTVG----------GLS-VLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCF----------QA 154 (585)
Q Consensus 96 t~GpG----------~~n-~~~gl~~A~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----------~~ 154 (585)
|++-. +.. .+++. -|-.-++||+++|||.-.. .+.+-+ +.
T Consensus 116 T~~~~~~~v~iNG~~~gE~~lna~-~Ag~~gVPV~lvsGDd~~~------------------~e~~~~~P~~~tv~vK~~ 176 (274)
T 1hi9_A 116 SMIFGVRHFYINDRPVGELGLNAY-VAGYYDVPVLMVAGDDRAA------------------KEAEELIPNVTTAAVKQT 176 (274)
T ss_dssp SSSTTEEEEEETTEEECHHHHHHH-HHHHTTCCEEEEEEEHHHH------------------HHHHTTSTTCEEEEEEEE
T ss_pred CCccceEEEEECCEEcCHHHHHHH-HHhhcCCCEEEEecCHHHH------------------HHHHHhCCCCeEEEEeec
Confidence 22211 111 12222 2345699999999984322 222222 22
Q ss_pred ceeEEEEecCcchhHHHHHHHHHHhhh
Q 007917 155 ITCSQAVVNNLGDAHELIDTAISTALK 181 (585)
Q Consensus 155 ~~k~~~~v~~~~~~~~~l~~A~~~a~~ 181 (585)
+.+++....+|+.+.+.|+++.+.|..
T Consensus 177 ~gr~aa~~~~p~~a~~~I~~aa~~Al~ 203 (274)
T 1hi9_A 177 ISRSAVKCLSPAKRGRLLTEKTAFALQ 203 (274)
T ss_dssp EETTEEEECCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCHHHHHHHHHHHHHHHHh
Confidence 333667777899999999999998885
No 153
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=31.41 E-value=93 Score=27.99 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=28.9
Q ss_pred ccEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCCCCc
Q 007917 90 VGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGPNSN 128 (585)
Q Consensus 90 ~~v~~~t~GpG-~~n~~~gl~~A~~~~~Pll~I~g~~~~~ 128 (585)
.-++++.|-.| ..+.+..+..|...+.++|.||+.....
T Consensus 132 ~DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~s~ 171 (212)
T 2i2w_A 132 GDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGK 171 (212)
T ss_dssp TCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTCGG
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCCCc
Confidence 34555555555 4668888889999999999999975443
No 154
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=31.22 E-value=1.1e+02 Score=29.44 Aligned_cols=63 Identities=10% Similarity=-0.017 Sum_probs=39.5
Q ss_pred CcEEEEEcCchhH-hHHHHHHhC-C--CeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEec--
Q 007917 458 KRVIACIGDGSFQ-EISTMIRCG-Q--RSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR-- 531 (585)
Q Consensus 458 ~~vv~v~GDGsf~-eL~ta~~~~-l--pv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~-- 531 (585)
|-+|.+.|.|+-+ +|..+.+.+ + .+..||-|+. |...+|+.+|+ +.+.+.
T Consensus 97 ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~-------------------~~~~~A~~~gI-----p~~~~~~~ 152 (292)
T 3lou_A 97 KVLIMVSKLEHCLADLLFRWKMGELKMDIVGIVSNHP-------------------DFAPLAAQHGL-----PFRHFPIT 152 (292)
T ss_dssp EEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEESSS-------------------TTHHHHHHTTC-----CEEECCCC
T ss_pred EEEEEEcCCCcCHHHHHHHHHcCCCCcEEEEEEeCcH-------------------HHHHHHHHcCC-----CEEEeCCC
Confidence 4467788999888 887776543 4 5555666654 34567999998 666543
Q ss_pred --CHHHHHHHHHHhh
Q 007917 532 --SEDELTEAMKTAT 544 (585)
Q Consensus 532 --~~~eL~~al~~a~ 544 (585)
+..+.++.+.+.+
T Consensus 153 ~~~r~~~~~~~~~~l 167 (292)
T 3lou_A 153 ADTKAQQEAQWLDVF 167 (292)
T ss_dssp SSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 3444444444444
No 155
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=30.79 E-value=93 Score=28.29 Aligned_cols=66 Identities=15% Similarity=0.076 Sum_probs=41.5
Q ss_pred CcEEEEEcCchhH-hHHHHHHhC-C--CeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEec--
Q 007917 458 KRVIACIGDGSFQ-EISTMIRCG-Q--RSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR-- 531 (585)
Q Consensus 458 ~~vv~v~GDGsf~-eL~ta~~~~-l--pv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~-- 531 (585)
|-+|.+.|.|+++ .|..+.+.+ + .|..||-|+.. ..-.+.|+.+|+ +.+.+.
T Consensus 9 ri~vl~SG~gsnl~all~~~~~~~l~~~I~~Visn~~~-----------------a~~l~~A~~~gI-----p~~~~~~~ 66 (209)
T 4ds3_A 9 RVVIFISGGGSNMEALIRAAQAPGFPAEIVAVFSDKAE-----------------AGGLAKAEAAGI-----ATQVFKRK 66 (209)
T ss_dssp EEEEEESSCCHHHHHHHHHHTSTTCSEEEEEEEESCTT-----------------CTHHHHHHHTTC-----CEEECCGG
T ss_pred cEEEEEECCcHHHHHHHHHHHcCCCCcEEEEEEECCcc-----------------cHHHHHHHHcCC-----CEEEeCcc
Confidence 4578899999999 887776543 4 45555555431 112468999998 676653
Q ss_pred ---CHHHHHHHHHHhhh
Q 007917 532 ---SEDELTEAMKTATG 545 (585)
Q Consensus 532 ---~~~eL~~al~~a~~ 545 (585)
+.+++++.+.+.++
T Consensus 67 ~~~~r~~~d~~~~~~l~ 83 (209)
T 4ds3_A 67 DFASKEAHEDAILAALD 83 (209)
T ss_dssp GSSSHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 34455555555543
No 156
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=30.77 E-value=1e+02 Score=29.60 Aligned_cols=63 Identities=13% Similarity=0.016 Sum_probs=39.6
Q ss_pred CcEEEEEcCchhH-hHHHHHHhC---CCeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEec--
Q 007917 458 KRVIACIGDGSFQ-EISTMIRCG---QRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR-- 531 (585)
Q Consensus 458 ~~vv~v~GDGsf~-eL~ta~~~~---lpv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~-- 531 (585)
|-+|.+.|.|+-+ +|..+.+.+ ..|..||-|+. |...+|+.+|+ +.+.+.
T Consensus 92 ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~-------------------~~~~~A~~~gI-----p~~~~~~~ 147 (286)
T 3n0v_A 92 KVVIMVSKADHCLNDLLYRQRIGQLGMDVVAVVSNHP-------------------DLEPLAHWHKI-----PYYHFALD 147 (286)
T ss_dssp EEEEEESSCCHHHHHHHHHHHTTSSCCEEEEEEESSS-------------------TTHHHHHHTTC-----CEEECCCB
T ss_pred EEEEEEeCCCCCHHHHHHHHHCCCCCcEEEEEEeCcH-------------------HHHHHHHHcCC-----CEEEeCCC
Confidence 4467788999888 887776543 34556666654 34567999998 666543
Q ss_pred --CHHHHHHHHHHhh
Q 007917 532 --SEDELTEAMKTAT 544 (585)
Q Consensus 532 --~~~eL~~al~~a~ 544 (585)
+.++.++.+.+.+
T Consensus 148 ~~~r~~~~~~~~~~l 162 (286)
T 3n0v_A 148 PKDKPGQERKVLQVI 162 (286)
T ss_dssp TTBHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 2344444444444
No 157
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=30.63 E-value=47 Score=26.84 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=26.5
Q ss_pred CCCEEEeCcccchhc-hHHHHHHHHHHhCCCe
Q 007917 236 VKPVLVGGPNIRVAK-AQKAFIELADATGYPI 266 (585)
Q Consensus 236 ~rpvIi~G~g~~~~~-a~~~l~~lae~l~~Pv 266 (585)
+|.++++|.|...+. ....+++.++..|+.+
T Consensus 22 kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~ 53 (113)
T 1tvm_A 22 RKIIVACGGAVATSTMAAEEIKELCQSHNIPV 53 (113)
T ss_dssp EEEEEESCSCSSHHHHHHHHHHHHHHHTTCCE
T ss_pred cEEEEECCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 467999999998876 5889999999999885
No 158
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=30.38 E-value=93 Score=25.00 Aligned_cols=32 Identities=9% Similarity=-0.132 Sum_probs=24.9
Q ss_pred CCHHHHHHHhcCCCCCccEEEecCHHHHHHHHHHhhh
Q 007917 509 WDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATG 545 (585)
Q Consensus 509 ~d~~~la~a~G~~~~~~~~~~v~~~~eL~~al~~a~~ 545 (585)
.|...-.+..|+ +.+.|++++|+++++++..+
T Consensus 12 ~dtv~GFrLaGi-----~~~~v~~~ee~~~~~~~l~~ 43 (109)
T 2d00_A 12 PETAQGFRLAGL-----EGYGASSAEEAQSLLETLVE 43 (109)
T ss_dssp HHHHHHHHHTTS-----EEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-----eEEEeCCHHHHHHHHHHHhh
Confidence 466666777787 78888889999888888764
No 159
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=29.97 E-value=1.5e+02 Score=24.97 Aligned_cols=86 Identities=16% Similarity=0.132 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhcCCC--EEEeCcccchh-----------chHHHHHHHHHHhCCCeEEcc---CCccCCCC-------
Q 007917 222 EAAVEATADFLNKAVKP--VLVGGPNIRVA-----------KAQKAFIELADATGYPIAIMP---SGKGLVPE------- 278 (585)
Q Consensus 222 ~~~~~~~~~~l~~a~rp--vIi~G~g~~~~-----------~a~~~l~~lae~l~~Pv~~t~---~gkg~~~~------- 278 (585)
...++-+...+...... |++.+.|+... ...+.+.+|++..|+++.... ..||+.++
T Consensus 30 ~~Al~~A~aala~g~eV~~VFf~~DGV~~a~~~q~p~~~~~~l~~~~~~La~~~gv~l~vC~~~a~~RGi~~~~~a~~~~ 109 (140)
T 2d1p_A 30 SSAFQFAQALIADGHELSSVFFYREGVYNANQLTSPASDEFDLVRAWQQLNAQHGVALNICVAAALRRGVVDETEAGRLG 109 (140)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECGGGGGGGBTTCCCCTTSCCHHHHHHHHHHHHCCEEEEEHHHHHHTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCccCEEEEechHHHHHhcCCCCccccCChHHHHHHHHHHcCCEEEEeHHHHHHcCCCchhhhhhcc
Confidence 44555555555544333 68888888643 235678889999999987755 35787655
Q ss_pred --CCCCceeeecCCCCCHHHHHHhhhCCEEEEe
Q 007917 279 --HHPHFIGTYWGAVSSSFCGEIVESADAYVFV 309 (585)
Q Consensus 279 --~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~l 309 (585)
.+.+..|.- ..+.....+++.++|-||.+
T Consensus 110 ~~~~~L~~g~~--i~gl~~L~~~~~~aDrVitF 140 (140)
T 2d1p_A 110 LASSNLQQGFT--LSGLGALAEASLTCDRVVQF 140 (140)
T ss_dssp CSCCCBCTTEE--EECTHHHHHHHHHSSEEEEC
T ss_pred cccccccCCeE--EcCHHHHHHHHHhCCEEEeC
Confidence 124444442 23456788899999999975
No 160
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=29.60 E-value=1.7e+02 Score=26.82 Aligned_cols=96 Identities=9% Similarity=0.050 Sum_probs=53.3
Q ss_pred cHHHHHHHHHHHcCCCEEEecCCCChHHHHHhhhcC-CCC---eEEecC----chhhHHHhh----hhh-------hhhc
Q 007917 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAE-PEL---NLVGCC----NELNAGYAA----DGY-------ARSR 88 (585)
Q Consensus 28 ~~a~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~-~~i---~~i~~~----~E~~A~~~A----~gy-------ar~t 88 (585)
..++.|++.|.+.+-=++||+=++. .+...+... ..+ +.+... +...+...+ .|| ...+
T Consensus 30 ~a~~~l~~~i~~~~~I~i~G~G~S~--~~A~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~e~~~g~~~~~~~~~~~~ 107 (243)
T 3cvj_A 30 KGAHLVSEAVMNGGRFYVFGSGHSH--MIAEEIYNRAGGLALVTAILPPELMLHERPNKSTYLERIEGLSKSYLKLHQVT 107 (243)
T ss_dssp HHHHHHHHHHHTTCCEEEEESGGGH--HHHHHTSSSTTCBTTEEECCCGGGSSSSSTTHHHHHTTCTTHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCEEEEEcCcHHH--HHHHHHHHHhccccccCcccchhhhccCCchhhhhhhhcccHHHHHHHHhcCC
Confidence 4556677777778877888885443 344444321 121 221111 111110001 122 1122
Q ss_pred CccEEEEeCCcc-hHHHHHHHHHhhhcCCcEEEEeCCC
Q 007917 89 GVGACVVTFTVG-GLSVLNAIAGAYSENLPVICIVGGP 125 (585)
Q Consensus 89 g~~v~~~t~GpG-~~n~~~gl~~A~~~~~Pll~I~g~~ 125 (585)
..-++++.|..| ..+.+..+..|...++++|.||+..
T Consensus 108 ~~Dv~I~iS~SG~t~~~i~~~~~Ak~~G~~vI~IT~~~ 145 (243)
T 3cvj_A 108 NKDVIMIISNSGRNTVPVEMAIESRNIGAKVIAMTSMK 145 (243)
T ss_dssp TTCEEEEECSSCCSHHHHHHHHHHHHHTCEEEEEECHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 235666666666 4568888889999999999999963
No 161
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=29.58 E-value=2e+02 Score=24.85 Aligned_cols=88 Identities=11% Similarity=0.027 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHhh----hcCCCCeEEecC---chhhHHHhhhhhhhhcCccEEEEeCCcc-hH
Q 007917 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHL----IAEPELNLVGCC---NELNAGYAADGYARSRGVGACVVTFTVG-GL 102 (585)
Q Consensus 31 ~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al----~~~~~i~~i~~~---~E~~A~~~A~gyar~tg~~v~~~t~GpG-~~ 102 (585)
+.+++.|.+..-=++||+-++ ..+...+ .+ -++.++... ++.. .-....+..-++++.|-.| ..
T Consensus 30 ~~~~~~i~~a~~I~i~G~G~S--~~~a~~~~~~l~~-~g~~~~~~~~~~~~~~-----~~~~~~~~~d~~i~iS~sG~t~ 101 (187)
T 3sho_A 30 EAAVEAICRADHVIVVGMGFS--AAVAVFLGHGLNS-LGIRTTVLTEGGSTLT-----ITLANLRPTDLMIGVSVWRYLR 101 (187)
T ss_dssp HHHHHHHHHCSEEEEECCGGG--HHHHHHHHHHHHH-TTCCEEEECCCTHHHH-----HHHHTCCTTEEEEEECCSSCCH
T ss_pred HHHHHHHHhCCEEEEEecCch--HHHHHHHHHHHHh-cCCCEEEecCCchhHH-----HHHhcCCCCCEEEEEeCCCCCH
Confidence 567788888765555555333 3333333 33 245554433 2321 1112333335666666666 45
Q ss_pred HHHHHHHHhhhcCCcEEEEeCCCC
Q 007917 103 SVLNAIAGAYSENLPVICIVGGPN 126 (585)
Q Consensus 103 n~~~gl~~A~~~~~Pll~I~g~~~ 126 (585)
+.+..+..|...++|+|+||+...
T Consensus 102 ~~~~~~~~ak~~g~~vi~IT~~~~ 125 (187)
T 3sho_A 102 DTVAALAGAAERGVPTMALTDSSV 125 (187)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCTT
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCC
Confidence 578888889999999999998643
No 162
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=29.44 E-value=65 Score=25.82 Aligned_cols=30 Identities=17% Similarity=0.121 Sum_probs=24.6
Q ss_pred CCCEEEeCcccchhchHH-HHHHHHHHhCCC
Q 007917 236 VKPVLVGGPNIRVAKAQK-AFIELADATGYP 265 (585)
Q Consensus 236 ~rpvIi~G~g~~~~~a~~-~l~~lae~l~~P 265 (585)
+|.++++|.|...+.... .+++.++..|++
T Consensus 19 ~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~ 49 (110)
T 3czc_A 19 VKVLTACGNGMGSSMVIKMKVENALRQLGVS 49 (110)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred cEEEEECCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 567899999988776554 899999999987
No 163
>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1
Probab=29.28 E-value=81 Score=36.13 Aligned_cols=114 Identities=11% Similarity=0.080 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhcC-----------------CCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCC--CCCC
Q 007917 221 LEAAVEATADFLNKAV-----------------KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVP--EHHP 281 (585)
Q Consensus 221 ~~~~~~~~~~~l~~a~-----------------rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~--~~hp 281 (585)
.+++++.+++.|++.+ .-+.+.|++.......-.+.+|+..+|.+-+.+......-+ ..+.
T Consensus 88 WdeAl~~ia~~l~~i~~~~g~~~~~~G~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~Gs~n~~~~~~~c~~~~~~~~~ 167 (977)
T 1h0h_A 88 WDWMLDTIAERVAKTREATFVTKNAKGQVVNRCDGIASVGSAAMDNEECWIYQAWLRSLGLFYIEHQARIXHSATVAALA 167 (977)
T ss_dssp HHHHHHHHHHHHHHHHHHHEEEECTTSCEEEEECSEEEECCTTSCHHHHHHHHHHHHHTTBCCEECTHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccccccCceEEEEeCCCcccHHHHHHHHHHHHcCCCccccccccccchHHHHHH
Confidence 5678888888877542 12444444332222334568899999987655321100000 0000
Q ss_pred CceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccc----cCCCcceEEEcCCce
Q 007917 282 HFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRV 338 (585)
Q Consensus 282 ~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~~~~ 338 (585)
..+|. +.... . ..-+.+||+||++|+...+.....+.. ..++.++|.||+...
T Consensus 168 ~~~G~--~~~~~-~-~~D~~~ad~il~~G~N~~~~~p~~~~~~~~a~~~G~klivIDPr~t 224 (977)
T 1h0h_A 168 ESYGR--GAMTN-H-WIDLKNSDVILMMGSNPAENHPISFKWVMRAKDKGATLIHVDPRYT 224 (977)
T ss_dssp HHHSC--CSCSS-C-TGGGGGCSEEEEESCCHHHHSTTHHHHHHHHHHTTCEEEEECSSCC
T ss_pred HHhCC--CCCCC-C-HHHHhhCCEEEEECCChHHhCcHHHHHHHHHHHCCCeEEEECCCCC
Confidence 11121 10111 0 123679999999998764433222211 124578999998754
No 164
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A* 1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*
Probab=29.25 E-value=42 Score=39.49 Aligned_cols=115 Identities=10% Similarity=-0.056 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHhc------CCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCH
Q 007917 221 LEAAVEATADFLNKA------VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSS 294 (585)
Q Consensus 221 ~~~~~~~~~~~l~~a------~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~ 294 (585)
.+++++.+++.|.+. ++...+.+.............+|+..+|-+.+.........+..++...|.. .....
T Consensus 163 WDEAld~IA~~l~~i~~~~Gp~sI~~~~~~~~~~~~~y~~~~rf~~~lG~~~~~~~~~~c~~~~~~~~~~G~~-~~~~~- 240 (1247)
T 1q16_A 163 WQEVNELIAASNVYTIKNYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPQTWGEQ-TDVPE- 240 (1247)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGEEEECCCGGGSHHHHHHHHHHHHHHTCEEECCTTTTTCSCTHHHHHHSCS-CCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEEEeCCccchHHHHHHHHHHHHHhCCCccCCCCchhhhhhhHHHHhCCC-CCCCC-
Confidence 567777777776542 2333333333221112222358888899876643221111121112222210 00010
Q ss_pred HHHHHhhhCCEEEEeCCccCCcccccccc----cCCCcceEEEcCCcee
Q 007917 295 FCGEIVESADAYVFVGPIFNDYSSVGYSL----LIKKEKAIIVQPHRVT 339 (585)
Q Consensus 295 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~~~~~~~i~id~~~~~ 339 (585)
..-+.+||+||++|+......+..+.. ..++.|+|.||+....
T Consensus 241 --~~D~~~ad~iv~wGsN~~~t~~~~~~~l~~ar~~G~KvVvIDPr~t~ 287 (1247)
T 1q16_A 241 --SADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAVTPDYAE 287 (1247)
T ss_dssp --GGGGGGCSEEEEESCCHHHHSGGGHHHHHHHGGGTCEEEEECSSCCH
T ss_pred --HHHHhhCCEEEEECCCchhccHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 123568999999998764433222221 1235689999987653
No 165
>3e7d_A COBH, precorrin-8X methylmutase; ssgcid, decode, braba00006A, structural genomics, seattle ST genomics center for infectious disease; 1.80A {Brucella abortus} SCOP: c.23.17.1
Probab=29.13 E-value=77 Score=28.86 Aligned_cols=53 Identities=26% Similarity=0.365 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhcC-CCEEEeCcccchhchHHHHHHHHHH-hCCCeEEccCCcc
Q 007917 222 EAAVEATADFLNKAV-KPVLVGGPNIRVAKAQKAFIELADA-TGYPIAIMPSGKG 274 (585)
Q Consensus 222 ~~~~~~~~~~l~~a~-rpvIi~G~g~~~~~a~~~l~~lae~-l~~Pv~~t~~gkg 274 (585)
+.++-++.+++.+.+ ||.+|+|--+..-++.+.=.+|.+. .++|.++...-||
T Consensus 141 PTAL~~Lleli~~g~~~PalVIG~PVGFV~aaESKe~L~~~~~~vP~I~~~GrkG 195 (212)
T 3e7d_A 141 PTALFRLFELLDAGAPKPALIIGMPVGFVGAAESKDELAANSRGVPYVIVRGRRG 195 (212)
T ss_dssp HHHHHHHHHHHHTTCCCCSEEEECCCSSSSHHHHHHHHHHCCTTCCEEEECSSCC
T ss_pred HHHHHHHHHHHHcCCCCcceEEEeCCCccChHHHHHHHHhcCCCCCEEEEecCCC
Confidence 356778889998765 9999999888766666555566663 7999999765553
No 166
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=29.11 E-value=1.2e+02 Score=29.22 Aligned_cols=63 Identities=8% Similarity=0.018 Sum_probs=39.7
Q ss_pred CcEEEEEcCchhH-hHHHHHHhC-C--CeEEEEEeCCceeeeeeecCCCCCCCCCCCHHHHHHHhcCCCCCccEEEec--
Q 007917 458 KRVIACIGDGSFQ-EISTMIRCG-Q--RSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVR-- 531 (585)
Q Consensus 458 ~~vv~v~GDGsf~-eL~ta~~~~-l--pv~ivV~NN~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~~~v~-- 531 (585)
|-+|.+.|.|+-+ +|..+.+.+ + .|..||-|+. |...+|+.+|+ +.+.+.
T Consensus 107 ri~vl~Sg~g~nl~~ll~~~~~g~l~~~I~~Visn~~-------------------~~~~~A~~~gI-----p~~~~~~~ 162 (302)
T 3o1l_A 107 RVVLMASRESHCLADLLHRWHSDELDCDIACVISNHQ-------------------DLRSMVEWHDI-----PYYHVPVD 162 (302)
T ss_dssp EEEEEECSCCHHHHHHHHHHHTTCSCSEEEEEEESSS-------------------TTHHHHHTTTC-----CEEECCCC
T ss_pred EEEEEEeCCchhHHHHHHHHHCCCCCcEEEEEEECcH-------------------HHHHHHHHcCC-----CEEEcCCC
Confidence 4467789999888 887776543 3 4555665554 34578999998 677662
Q ss_pred --CHHHHHHHHHHhh
Q 007917 532 --SEDELTEAMKTAT 544 (585)
Q Consensus 532 --~~~eL~~al~~a~ 544 (585)
+.++.++.+.+.+
T Consensus 163 ~~~r~~~~~~~~~~l 177 (302)
T 3o1l_A 163 PKDKEPAFAEVSRLV 177 (302)
T ss_dssp SSCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 2334444444444
No 167
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=28.81 E-value=1.3e+02 Score=28.87 Aligned_cols=73 Identities=18% Similarity=0.149 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhcCCC--EEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh
Q 007917 223 AAVEATADFLNKAVKP--VLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (585)
Q Consensus 223 ~~~~~~~~~l~~a~rp--vIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l 300 (585)
..+.+|+..|...++| ++++|.. ..+.+.+.++|++.|.+.+..-.=.|.|-. + .. ..+
T Consensus 56 ~~L~~A~~~i~~i~~~~~ILfVgTk---~~aq~~V~k~A~~~g~~yv~~RWlgG~LTN----~-------~t-----~~f 116 (295)
T 2zkq_b 56 EKLLLAARAIVAIENPADVSVISSR---NTGQRAVLKFAAATGATPIAGRFTPGTFTN----Q-------IQ-----AAF 116 (295)
T ss_dssp HHHHHHHHHHHHSSCGGGEEEEECS---HHHHHHHHHHHHHHCCEEEESSCCCC-CCC----T-------TC-----SSC
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCc---HHHHHHHHHHHHHhCCceecceEecccccC----c-------cc-----ccc
Confidence 4577777877755443 7777753 246788999999999988874322222211 1 00 134
Q ss_pred hhCCEEEEeCCccC
Q 007917 301 ESADAYVFVGPIFN 314 (585)
Q Consensus 301 ~~aD~vl~lG~~~~ 314 (585)
.+.|+|+++..+-+
T Consensus 117 ~~PdlliV~Dp~~e 130 (295)
T 2zkq_b 117 REPRLLVVTDPRAD 130 (295)
T ss_dssp CCCSEEEESCTTTT
T ss_pred cCCCeEEEeCCCcc
Confidence 68999999986543
No 168
>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A
Probab=28.66 E-value=1.2e+02 Score=32.79 Aligned_cols=103 Identities=15% Similarity=0.142 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh
Q 007917 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (585)
Q Consensus 221 ~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l 300 (585)
-+.+++++.+.|.+.++.+|+.-..+..-.+...+.++.+++|..+..- +|+..+-..|.. . ....+..
T Consensus 58 m~~Av~~i~~aI~~~ekI~I~GH~D~DGi~Saa~L~~~L~~lG~~v~~~------ip~r~~egygl~----~-~~I~~~~ 126 (666)
T 2zxr_A 58 LREAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPF------IPHRLEEGYGVL----M-ERVPEHL 126 (666)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEC------CC-----------------------
T ss_pred HHHHHHHHHHHHHcCCeEEEEeccCCchHHHHHHHHHHHHHcCCcEEEe------cCCCCCccccCC----H-HHHHhhc
Confidence 3556778888888776644444343322346677888889999875543 333222222221 1 1223333
Q ss_pred hhCCEEEEeCCccCCccccccccc-CCCcceEEEcCC
Q 007917 301 ESADAYVFVGPIFNDYSSVGYSLL-IKKEKAIIVQPH 336 (585)
Q Consensus 301 ~~aD~vl~lG~~~~~~~~~~~~~~-~~~~~~i~id~~ 336 (585)
.+.|+||++.+....... .... ....++|.+|-.
T Consensus 127 ~~~~LIItVD~G~~s~~~--i~~a~~~g~~VIViDHH 161 (666)
T 2zxr_A 127 EASDLFLTVDCGITNHAE--LRELLENGVEVIVTDHH 161 (666)
T ss_dssp --CCEEEESCCC----------------CEEEEECCC
T ss_pred cCCCEEEEEcCCchhhhh--HHHHHhCCCCEEEECCc
Confidence 578999999876543332 1111 123457777643
No 169
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=28.64 E-value=1.8e+02 Score=27.16 Aligned_cols=73 Identities=19% Similarity=0.136 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhcCCC--EEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh
Q 007917 223 AAVEATADFLNKAVKP--VLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (585)
Q Consensus 223 ~~~~~~~~~l~~a~rp--vIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l 300 (585)
..+.+|+..+..+++| ++++|.-- .+.+.+.++|++.|.+.++.-.=.|.|-. +. ...+
T Consensus 89 ~~L~~A~~~i~~~~~~~~iLfVgTk~---~aq~~V~~~A~~~g~~yv~~RWlgG~LTN----~~------------~~~f 149 (253)
T 3bch_A 89 EKLLLAARAIVAIENPADVSVISSRN---TGQRAVLKFAAATGATPIAGRFTPGTFTN----QI------------QAAF 149 (253)
T ss_dssp HHHHHHHHHHHTCSSGGGEEEEECSH---HHHHHHHHHHHHHCCEEEESCCCTTTTTC----CS------------CSTT
T ss_pred HHHHHHHHHHHHHhCCCeEEEEeCCH---HHHHHHHHHHHHhCCeeecceecCCcccC----cc------------cccc
Confidence 4577788887755443 77777543 36788999999999998875332233321 10 0134
Q ss_pred hhCCEEEEeCCccC
Q 007917 301 ESADAYVFVGPIFN 314 (585)
Q Consensus 301 ~~aD~vl~lG~~~~ 314 (585)
.++|+|+++..+-+
T Consensus 150 ~~PdlliV~Dp~~e 163 (253)
T 3bch_A 150 REPRLLVVTDPRAD 163 (253)
T ss_dssp CSCSEEEESCTTTT
T ss_pred CCCCEEEEECCCcc
Confidence 68999999986543
No 170
>2iec_A Uncharacterized protein conserved in archaea; tetramer with intra-molecular and inter-molecular disufide bonds, structural genomics, PSI-2; 2.33A {Methanopyrus kandleri} SCOP: d.316.1.1
Probab=28.56 E-value=45 Score=27.64 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=27.3
Q ss_pred EecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChH
Q 007917 529 KVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSK 565 (585)
Q Consensus 529 ~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~~~ 565 (585)
..++.+.|++|+++++. ..|.+|+|.++++....
T Consensus 36 ~~eta~sLE~AIE~si~---~QP~vv~V~I~~d~l~~ 69 (131)
T 2iec_A 36 SPGTAEEVAKCIERAAL---LQPCVIDARVEVDVSSE 69 (131)
T ss_dssp CGGGHHHHHHHHHHHHT---TSTTEEEEEEEECCCGG
T ss_pred CcccHHHHHHHHHHHHh---cCCeEEEEEecHHHhhc
Confidence 35789999999999994 66777999998866543
No 171
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=28.21 E-value=1.3e+02 Score=26.01 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=22.8
Q ss_pred HHHHHHHHHcCCC---EEEecCCCChHHHHH
Q 007917 31 RHLARRLVEIGAK---DVFSVPGDFNLTLLD 58 (585)
Q Consensus 31 ~~i~~~L~~~Gv~---~vFg~PG~~~~~l~~ 58 (585)
+.-.+.|+++|++ .++-+||+..+|+.-
T Consensus 19 ~gA~~~L~~~G~~~~i~~~~VPGafEiP~aa 49 (156)
T 2b99_A 19 SIAIKKLKELSPNIKIIRKTVPGIKDLPVAC 49 (156)
T ss_dssp HHHHHHHHHHCTTCEEEEEEESSGGGHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEEECCcHHHHHHHH
Confidence 5567899999985 348999999999874
No 172
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=27.90 E-value=1.4e+02 Score=27.83 Aligned_cols=73 Identities=16% Similarity=0.100 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhcCCC--EEEeCcccchhchHHHHHHHHHHhCCCeE-EccCCccCCCCCCCCceeeecCCCCCHHHHH
Q 007917 222 EAAVEATADFLNKAVKP--VLVGGPNIRVAKAQKAFIELADATGYPIA-IMPSGKGLVPEHHPHFIGTYWGAVSSSFCGE 298 (585)
Q Consensus 222 ~~~~~~~~~~l~~a~rp--vIi~G~g~~~~~a~~~l~~lae~l~~Pv~-~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~ 298 (585)
-..+.+|+..+...++| ++++|.- ..+.+.+.++|++.|.+.+ +.-.=.|.|- +.. ..
T Consensus 50 ~~~L~~A~~~i~~i~~~~~iLfVgtk---~~~~~~V~~~A~~~g~~yv~~~RWlgG~LT---------------N~~-t~ 110 (241)
T 2xzm_B 50 WQKIKLAARVIAAVQHPEDVMVVCSR---IYGQRAAIKFAGYTHCKSTSSSRWTPGTLT---------------NYQ-TL 110 (241)
T ss_dssp HHHHHHHHHHHHHCSSGGGEEEECCS---HHHHHHHHHHHHHHTCBCCCCSSCCTTTTT---------------CTT-CT
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEECC---HHHHHHHHHHHHHhCCEEeccccccCCccc---------------Ccc-cc
Confidence 34677888888776544 7888763 2467889999999998877 5322122221 100 02
Q ss_pred HhhhCCEEEEeCCcc
Q 007917 299 IVESADAYVFVGPIF 313 (585)
Q Consensus 299 ~l~~aD~vl~lG~~~ 313 (585)
.+..+|+|+++..+-
T Consensus 111 ~~~~PdlliV~Dp~~ 125 (241)
T 2xzm_B 111 KYEEPRVLIVTDPRS 125 (241)
T ss_dssp TCCCCSEEEESCTTT
T ss_pred ccCCCCEEEEECCCc
Confidence 346799999998653
No 173
>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*
Probab=27.37 E-value=7.8 Score=42.95 Aligned_cols=112 Identities=11% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhc-----CCCEEEeCcccchhchHHHHHHHHHH-hCCCeEEccCCccCCCCCCCCceeeecCCCCCHH
Q 007917 222 EAAVEATADFLNKA-----VKPVLVGGPNIRVAKAQKAFIELADA-TGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSF 295 (585)
Q Consensus 222 ~~~~~~~~~~l~~a-----~rpvIi~G~g~~~~~a~~~l~~lae~-l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~ 295 (585)
+++++.+++.|++. ..-+.+.|++.......-.+.+|+.. +|.+-+.....-..-+...-+..-. |......
T Consensus 82 deAl~~ia~~l~~~~~~~G~~~i~~~~~~~~~~e~~~~~~~~~~~~~gs~n~~~~~~~c~~~~~~~~~~~~--G~~~~~~ 159 (723)
T 2nap_A 82 DEALDLMASRFRSSIDMYGPNSVAWYGSGQCLTEESYVANKIFKGGFGTNNVDGNPRLCMASAVGGYVTSF--GKDEPMG 159 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEEECTTSCHHHHHHHHHHHHHTSCCCCEEEGGGGTTHHHHHHHHHHH--SSCSCSS
T ss_pred HHHHHHHHHHHHHHHHhhCCCeEEEEeCCcccchhhHHHHHHHHHhcCCCceeCCCccccchHhHHHHhcc--CCCCCCC
Q ss_pred HHHHhhhCCEEEEeCCccCCcccccccccC----C--CcceEEEcC
Q 007917 296 CGEIVESADAYVFVGPIFNDYSSVGYSLLI----K--KEKAIIVQP 335 (585)
Q Consensus 296 ~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~----~--~~~~i~id~ 335 (585)
...-++++|+||++|+.+.+.....+..+. . +.++|.||+
T Consensus 160 ~~~d~~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~g~klividP 205 (723)
T 2nap_A 160 TYADIDQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADP 205 (723)
T ss_dssp CGGGGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECS
T ss_pred ChhhHhHCCEEEEEcCChhHhCcHHHHHHHHHHhhCCCCEEEEEcC
No 174
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=27.02 E-value=1.6e+02 Score=25.43 Aligned_cols=31 Identities=23% Similarity=0.491 Sum_probs=24.3
Q ss_pred HHHHHHHHcCCC----EEEecCCCChHHHHH-hhhc
Q 007917 32 HLARRLVEIGAK----DVFSVPGDFNLTLLD-HLIA 62 (585)
Q Consensus 32 ~i~~~L~~~Gv~----~vFg~PG~~~~~l~~-al~~ 62 (585)
...+.|+++|++ .+|-+||....|+.- .|.+
T Consensus 31 gA~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~ 66 (158)
T 1di0_A 31 SFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLAR 66 (158)
T ss_dssp HHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHh
Confidence 345888999986 699999999999874 3443
No 175
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=26.68 E-value=2e+02 Score=28.43 Aligned_cols=41 Identities=12% Similarity=0.188 Sum_probs=26.7
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHhhhcCCCCeEEec
Q 007917 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGC 71 (585)
Q Consensus 31 ~~i~~~L~~~Gv~~vFg~PG~~~~~l~~al~~~~~i~~i~~ 71 (585)
+..++.|.+.|++-||+.......++.+...+.|+++++.+
T Consensus 76 ~~~l~~l~~~g~d~Ii~~g~~~~~~~~~vA~~~Pdv~fv~i 116 (356)
T 3s99_A 76 ERSIKRIARAGNKLIFTTSFGYMDPTVKVAKKFPDVKFEHA 116 (356)
T ss_dssp HHHHHHHHHTTCSEEEECSGGGHHHHHHHHTTCTTSEEEEE
T ss_pred HHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEE
Confidence 34567788889998888755555555555454466666544
No 176
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=26.35 E-value=63 Score=27.02 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=23.0
Q ss_pred CCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccC
Q 007917 236 VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPS 271 (585)
Q Consensus 236 ~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~ 271 (585)
+-|.||+-+|.. ..+.+.++|+..|+||+.|..
T Consensus 74 ~~~~iIlt~g~~---~~~~i~~~A~~~~ipvl~t~~ 106 (139)
T 2ioj_A 74 NVRCLILTGNLE---PVQLVLTKAEERGVPVILTGH 106 (139)
T ss_dssp TEEEEEEETTCC---CCHHHHHHHHHHTCCEEECSS
T ss_pred CCcEEEEcCCCC---CCHHHHHHHHHCCCeEEEECC
Confidence 345544444433 457888999999999999764
No 177
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=26.21 E-value=80 Score=25.20 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=25.4
Q ss_pred CCEEEeCcccchhchHHHHHHHHHHhCCCeE
Q 007917 237 KPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (585)
Q Consensus 237 rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~ 267 (585)
|.++++|.|...+-..+.+++.++..|+++-
T Consensus 6 kIlvvC~~G~~TSll~~kl~~~~~~~gi~~~ 36 (109)
T 2l2q_A 6 NILLVCGAGMSTSMLVQRIEKYAKSKNINAT 36 (109)
T ss_dssp EEEEESSSSCSSCHHHHHHHHHHHHHTCSEE
T ss_pred EEEEECCChHhHHHHHHHHHHHHHHCCCCeE
Confidence 3688899999887667899999999998753
No 178
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=25.76 E-value=3.1e+02 Score=23.37 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEc
Q 007917 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (585)
Q Consensus 221 ~~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t 269 (585)
+.+.+++++++|.+++ -++++|.|.... ....+.....++|.++..-
T Consensus 26 ~~~~i~~~~~~i~~a~-~I~i~G~G~S~~-~A~~~~~~l~~~g~~~~~~ 72 (180)
T 1jeo_A 26 WKNKLDSLIDRIIKAK-KIFIFGVGRSGY-IGRCFAMRLMHLGFKSYFV 72 (180)
T ss_dssp HHHHHHHHHHHHHHCS-SEEEECCHHHHH-HHHHHHHHHHHTTCCEEET
T ss_pred CHHHHHHHHHHHHhCC-EEEEEeecHHHH-HHHHHHHHHHHcCCeEEEe
Confidence 4567899999999887 477888887554 3344444445688887764
No 179
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=25.76 E-value=98 Score=26.66 Aligned_cols=31 Identities=19% Similarity=0.418 Sum_probs=24.8
Q ss_pred HHHHHHHHcCCC----EEEecCCCChHHHHH-hhhc
Q 007917 32 HLARRLVEIGAK----DVFSVPGDFNLTLLD-HLIA 62 (585)
Q Consensus 32 ~i~~~L~~~Gv~----~vFg~PG~~~~~l~~-al~~ 62 (585)
...+.|+++|++ .+|-+||....|+.- .|.+
T Consensus 33 ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~ 68 (154)
T 1hqk_A 33 GAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELAR 68 (154)
T ss_dssp HHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHT
T ss_pred HHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHh
Confidence 345889999997 799999999999874 4443
No 180
>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}
Probab=25.59 E-value=14 Score=40.82 Aligned_cols=105 Identities=15% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh------cCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEc--cCCccCCCCCCCCceeeecCCCCC
Q 007917 222 EAAVEATADFLNK------AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM--PSGKGLVPEHHPHFIGTYWGAVSS 293 (585)
Q Consensus 222 ~~~~~~~~~~l~~------a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t--~~gkg~~~~~hp~~~G~~~g~~~~ 293 (585)
+++++.+++.|++ .+...++.|.+... +..-.+.+|+..+|.+-+.+ ....+.........+|. +....
T Consensus 81 deAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~-~~~~~~~~~~~~~G~~n~~~~~~~c~~~~~~~~~~~~G~--~~~~d 157 (727)
T 2e7z_A 81 DQALDEIAEKLKKIIAKYGPESLGVSQTEINQQ-SEYGTLRRFMNLLGSPNWTSAMYMCIGNTAGVHRVTHGS--YSFAS 157 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGEEEEECGGGTC-CCTTHHHHHHHHHTCCCEECGGGGTTHHHHHHHHHHHSS--CEEEC
T ss_pred HHHHHHHHHHHHHHHHhhCCcEEEEEeCCCCCc-cchHHHHHHHHHcCCCCccCCcccchhHHHHHHHHhcCC--CCCCC
Q ss_pred HHHHHHhhhCCEEEEeCCccCCccc-ccccccC----CCcceEEEcC
Q 007917 294 SFCGEIVESADAYVFVGPIFNDYSS-VGYSLLI----KKEKAIIVQP 335 (585)
Q Consensus 294 ~~~~~~l~~aD~vl~lG~~~~~~~~-~~~~~~~----~~~~~i~id~ 335 (585)
+.++|+||++|+.+.+... ..+..+. ++.++|.||+
T Consensus 158 ------~~~ad~il~~G~n~~~~~p~~~~~~l~~a~~~G~klividP 198 (727)
T 2e7z_A 158 ------FADSNCLLFIGKNLSNHNWVSQFNDLKAALKRGCKLIVLDP 198 (727)
T ss_dssp ------TTTCSEEEEESCCCBTTBSHHHHHHHHHHHHHTCEEEEECS
T ss_pred ------cccCCEEEEECCChhhcCCHHHHHHHHHHHHCCCeEEEECC
No 181
>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*
Probab=25.52 E-value=19 Score=41.51 Aligned_cols=115 Identities=14% Similarity=0.099 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHhcC-----------------CCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCC--CC
Q 007917 220 GLEAAVEATADFLNKAV-----------------KPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPE--HH 280 (585)
Q Consensus 220 ~~~~~~~~~~~~l~~a~-----------------rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~--~h 280 (585)
..+++++.+++.|++.+ .-+.+.|++....+..-.+.+|+..+|.+-+.+.......+. .+
T Consensus 125 SWdeAl~~iA~~l~~i~~~~g~~~~~~G~~~~~~~~i~~~~~~~~~~e~~~~~~~~~~~~Gs~n~~~~~~~c~~~~~~~~ 204 (1015)
T 1kqf_A 125 SWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLSTGMLCASGASNETGMLTQKFARSLGMLAVDNQARVXHGPTVASL 204 (1015)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCEEECTTSCEEEEBCSEEEECCTTSCHHHHHHHHHHHHHTTBCCEECGGGGTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhcccccccCcccccCceEEEEeCCCCccHHHHHHHHHHHHhCCCCcCCcccccccHHHHHH
Confidence 35778888888887542 124444443222223345688999999876653211000000 00
Q ss_pred CCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccc----c-CCCcceEEEcCCce
Q 007917 281 PHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSL----L-IKKEKAIIVQPHRV 338 (585)
Q Consensus 281 p~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~----~-~~~~~~i~id~~~~ 338 (585)
...+|. +.... ...-+.++|+||++|+...+.....+.. . .++.++|.||+...
T Consensus 205 ~~~~G~--~~~~~--~~~D~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~GaklivIDPr~t 263 (1015)
T 1kqf_A 205 APTFGR--GAMTN--HWVDIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFT 263 (1015)
T ss_dssp HHHHSC--CSCSS--CTGGGGGCSEEEEESCCHHHHSTTTTHHHHHHHHHSCCEEEEECSSCC
T ss_pred HHHhCC--CCCCC--CHHHHhhCCEEEEECCChhhhCchHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 011121 10111 0123679999999998764433222211 1 24568999998654
No 182
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=25.03 E-value=60 Score=32.55 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=25.0
Q ss_pred cCCCEEEeCcccchhchHHHHHHHHHHhCCCeE
Q 007917 235 AVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267 (585)
Q Consensus 235 a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~ 267 (585)
.+|++|+.+......+..+.+.+..+..|+.+.
T Consensus 31 ~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~ 63 (386)
T 1rrm_A 31 YQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWA 63 (386)
T ss_dssp CCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEEECcchhhchHHHHHHHHHHHcCCeEE
Confidence 578889888877665677888887777787664
No 183
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=25.00 E-value=67 Score=32.23 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=24.4
Q ss_pred cCCCEEEeCcccchh--chHHHHHHHHHHhCCCeE
Q 007917 235 AVKPVLVGGPNIRVA--KAQKAFIELADATGYPIA 267 (585)
Q Consensus 235 a~rpvIi~G~g~~~~--~a~~~l~~lae~l~~Pv~ 267 (585)
.+|++|+.|.+.... +..+.+.+..+..|+.+.
T Consensus 33 ~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~ 67 (387)
T 3bfj_A 33 GKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVA 67 (387)
T ss_dssp CSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEE
T ss_pred CCEEEEEECcchhhccchHHHHHHHHHHHcCCeEE
Confidence 478999999887765 577888887777787764
No 184
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=24.94 E-value=1.1e+02 Score=27.64 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHh-c---CCCEEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHH
Q 007917 223 AAVEATADFLNK-A---VKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGE 298 (585)
Q Consensus 223 ~~~~~~~~~l~~-a---~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~ 298 (585)
+.+++++++|.+ + .+-++++|.|....-+...-.+|. ++|.++.. +++.+.+..-..
T Consensus 42 ~~i~~~~~~i~~~a~~~a~~I~i~G~G~S~~~A~~~~~~l~-~lg~~~~~-------~~~~~~~~~~~~----------- 102 (220)
T 3etn_A 42 DAYEKAVELIVEQIHRKKGKLVTSGMGKAGQIAMNIATTFC-STGIPSVF-------LHPSEAQHGDLG----------- 102 (220)
T ss_dssp THHHHHHHHHHHHTTTTCCCEEEECSHHHHHHHHHHHHHHH-HTTCCEEE-------CCTTGGGBTGGG-----------
T ss_pred HHHHHHHHHHHhHhhccCCEEEEEEecHHHHHHHHHHHHHH-hcCCcEEE-------eCCHHHHHhhhc-----------
Q ss_pred HhhhCCEEEEe
Q 007917 299 IVESADAYVFV 309 (585)
Q Consensus 299 ~l~~aD~vl~l 309 (585)
.+.+-|+||++
T Consensus 103 ~~~~~DlvI~i 113 (220)
T 3etn_A 103 ILQENDLLLLI 113 (220)
T ss_dssp GCCTTCEEEEE
T ss_pred cCCCCCEEEEE
No 185
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=24.78 E-value=7.5e+02 Score=27.49 Aligned_cols=116 Identities=12% Similarity=0.089 Sum_probs=61.7
Q ss_pred eEEecCchhhHHHhhhhhhhhcCccEEEEeCCcch---HHHHHH----HHHh-----hhcCC-cEEEEeCCCCCccCCCc
Q 007917 67 NLVGCCNELNAGYAADGYARSRGVGACVVTFTVGG---LSVLNA----IAGA-----YSENL-PVICIVGGPNSNDYGTN 133 (585)
Q Consensus 67 ~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~---~n~~~g----l~~A-----~~~~~-Pll~I~g~~~~~~~~~~ 133 (585)
|+|....|++.+.+|.||+...+.+ ++.+.++=+ .-+.+. |-.+ |+-.+ ++.+|....... .|.+
T Consensus 492 R~i~GI~Eh~M~gia~Glal~G~~~-f~~t~atFl~~~~~a~~q~akwiR~a~a~~~wr~~~~~v~~v~Th~si~-~GeD 569 (845)
T 3ahc_A 492 QVTEQLSEHQCEGFLEAYLLTGRHG-IWSSYESFVHVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVWR-QDHN 569 (845)
T ss_dssp SEEECSCHHHHHHHHHHHHHTTCEE-EEEEEHHHHGGGHHHHHHHHHHHHHHHHHCTTSCCCBCEEEEEESCGGG-CTTT
T ss_pred cEeeeecHHHHHHHHHHHHhcCCCC-ceecchhhhchhhhHHHHHHHHHHhhHHhhhhcccCCceEEEEeCCcee-ecCC
Confidence 6877999999999999999875433 333333322 123444 3333 11245 355544433332 3333
Q ss_pred cceeeccCCCChHHHHHHhh--hce-eEEEEecCcchhHHHHHHHHHHhhhcCCcEEEEec
Q 007917 134 RILHHTIGLPDFTQELRCFQ--AIT-CSQAVVNNLGDAHELIDTAISTALKESKPVYISIS 191 (585)
Q Consensus 134 ~~~~~~~~~~~~~d~~~~~~--~~~-k~~~~v~~~~~~~~~l~~A~~~a~~~~gPV~i~iP 191 (585)
..-|+. .++.|+..+.+ .+. -..++..++ ..+..|++.|...++|+++.+-
T Consensus 570 GpTHQ~---~e~~d~l~~~r~~~iPn~~V~~PaDa----net~~a~~~al~~~~~~~v~v~ 623 (845)
T 3ahc_A 570 GFSHQD---PGVTSLLINKTFNNDHVTNIYFATDA----NMLLAISEKCFKSTNKINAIFA 623 (845)
T ss_dssp CGGGCC---CTHHHHHGGGCCTTCCCEEEEECCSH----HHHHHHHHHHHHCBSCEEEEEC
T ss_pred CCCCCC---cHHHHHHHHhhccCCCCeEEEeCCCH----HHHHHHHHHHHHcCCCeEEEEe
Confidence 333332 23455544431 221 123344443 3355677777777788888773
No 186
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=24.78 E-value=53 Score=26.41 Aligned_cols=66 Identities=20% Similarity=0.192 Sum_probs=41.8
Q ss_pred chHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcc
Q 007917 250 KAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEK 329 (585)
Q Consensus 250 ~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~ 329 (585)
=+.+.|++-|+++|+.+-...+|.. |.- ..+ ..+-+.+||+||+.+....+.. . | .+.+
T Consensus 20 mAaeaL~~aA~~~G~~ikVEtqGs~----------G~~-n~L----t~~~I~~Ad~VIiA~d~~v~~~--R---F-~GK~ 78 (106)
T 2r48_A 20 MAAENLQKAADRLGVSIKVETQGGI----------GVE-NKL----TEEEIREADAIIIAADRSVNKD--R---F-IGKK 78 (106)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEEETT----------EEE-SCC----CHHHHHHCSEEEEEESSCCCCG--G---G-TTSB
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCC----------Ccc-CCC----CHHHHHhCCEEEEEeCCccCHh--H---c-CCCe
Confidence 3789999999999999888666541 210 111 2356789999999986433321 1 1 2335
Q ss_pred eEEEcCC
Q 007917 330 AIIVQPH 336 (585)
Q Consensus 330 ~i~id~~ 336 (585)
++++++.
T Consensus 79 v~~~~v~ 85 (106)
T 2r48_A 79 LLSVGVQ 85 (106)
T ss_dssp EEEECHH
T ss_pred EEEeCHH
Confidence 6766554
No 187
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=24.36 E-value=98 Score=26.65 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=24.8
Q ss_pred HHHHHHHHcCCC----EEEecCCCChHHHHH-hhhc
Q 007917 32 HLARRLVEIGAK----DVFSVPGDFNLTLLD-HLIA 62 (585)
Q Consensus 32 ~i~~~L~~~Gv~----~vFg~PG~~~~~l~~-al~~ 62 (585)
...+.|+++|++ .++-+||....|+.- .|.+
T Consensus 33 ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~ 68 (154)
T 1rvv_A 33 GAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAE 68 (154)
T ss_dssp HHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHh
Confidence 345889999997 799999999999874 3443
No 188
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=24.17 E-value=1.3e+02 Score=25.90 Aligned_cols=28 Identities=32% Similarity=0.733 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCCC----EEEecCCCChHHHHH
Q 007917 31 RHLARRLVEIGAK----DVFSVPGDFNLTLLD 58 (585)
Q Consensus 31 ~~i~~~L~~~Gv~----~vFg~PG~~~~~l~~ 58 (585)
+...+.|+++|++ .+|-+||....|+.-
T Consensus 31 ~gA~~~l~~~Gv~~~~i~v~~VPGafEiP~aa 62 (157)
T 2obx_A 31 SAFEAEMADIGGDRFAVDVFDVPGAYEIPLHA 62 (157)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEESSGGGHHHHH
T ss_pred HHHHHHHHHcCCCccceEEEECCcHHHHHHHH
Confidence 3345888999986 599999999999874
No 189
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=24.07 E-value=80 Score=31.69 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=31.3
Q ss_pred HHHHHHHHHHh--cCCCEEEeCcccchhchHHHHHHHHHHhCCCeEE
Q 007917 224 AVEATADFLNK--AVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (585)
Q Consensus 224 ~~~~~~~~l~~--a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~ 268 (585)
.++++.+.+.+ .+|++||.|......+..+.+.+..+..|+.+..
T Consensus 18 ~~~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~ 64 (383)
T 3ox4_A 18 SLEKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAV 64 (383)
T ss_dssp HHHHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEE
Confidence 34555555554 4789999998776655678888877777877643
No 190
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=23.45 E-value=95 Score=26.95 Aligned_cols=44 Identities=14% Similarity=0.056 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEE
Q 007917 224 AVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (585)
Q Consensus 224 ~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~ 268 (585)
.+++++++|.++++-++++|.|.... ....+.....++|.++..
T Consensus 37 ~i~~~~~~i~~a~~~I~i~G~G~S~~-~a~~~~~~l~~~g~~~~~ 80 (183)
T 2xhz_A 37 NFTLACEKMFWCKGKVVVMGMGASGH-IGRKMAATFASTGTPSFF 80 (183)
T ss_dssp HHHHHHHHHHTCSSCEEEEECHHHHH-HHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHHHHHhCCCeEEEEeecHHHH-HHHHHHHHHHhcCceEEE
Confidence 78999999999986899999887653 333333333456777755
No 191
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=23.16 E-value=52 Score=30.95 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhcCCCEEEeCcccch
Q 007917 223 AAVEATADFLNKAVKPVLVGGPNIRV 248 (585)
Q Consensus 223 ~~~~~~~~~l~~a~rpvIi~G~g~~~ 248 (585)
+.+++++++|.++++.+|+.|.|+..
T Consensus 3 ~~i~~l~~~l~~a~~ivv~tGAGiS~ 28 (253)
T 1ma3_A 3 DEIRKAAEILAKSKHAVVFTGAGISA 28 (253)
T ss_dssp HHHHHHHHHHHHCSSEEEEECGGGSC
T ss_pred HHHHHHHHHHHhCCcEEEEEchhhhH
Confidence 45788999999999999999999875
No 192
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=23.02 E-value=53 Score=26.37 Aligned_cols=66 Identities=20% Similarity=0.234 Sum_probs=41.8
Q ss_pred chHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccCCcccccccccCCCcc
Q 007917 250 KAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEK 329 (585)
Q Consensus 250 ~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~ 329 (585)
=+.+.|++-|+++|+.+-...+|.. |.- ..+ ..+-+.+||+||+.+....+.. . | .+.+
T Consensus 20 mAaeaL~~aA~~~G~~ikVEtqGs~----------G~~-n~L----t~~~I~~Ad~VIiA~d~~v~~~--R---F-~GK~ 78 (106)
T 2r4q_A 20 MAADALKEKAKELGVEIKVETNGSS----------GIK-HKL----TAQEIEDAPAIIVAADKQVEME--R---F-KGKR 78 (106)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEEETT----------EEE-SCC----CHHHHHHCSCEEEEESSCCCCG--G---G-TTSB
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCC----------Ccc-CCC----CHHHHHhCCEEEEEeCCccCHh--H---c-CCCe
Confidence 4789999999999999888666541 210 111 2356789999999986433321 1 1 2335
Q ss_pred eEEEcCC
Q 007917 330 AIIVQPH 336 (585)
Q Consensus 330 ~i~id~~ 336 (585)
++++++.
T Consensus 79 v~~~~v~ 85 (106)
T 2r4q_A 79 VLQVPVT 85 (106)
T ss_dssp EEEECHH
T ss_pred EEEeCHH
Confidence 6766554
No 193
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=22.78 E-value=3.3e+02 Score=23.38 Aligned_cols=46 Identities=15% Similarity=0.220 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEc
Q 007917 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (585)
Q Consensus 222 ~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t 269 (585)
.+.+++++++|.+++| ++++|.|.... ....+.....++|.++..-
T Consensus 24 ~~~i~~~~~~i~~a~~-I~i~G~G~S~~-~A~~~~~~l~~~g~~~~~~ 69 (186)
T 1m3s_A 24 NEEADQLADHILSSHQ-IFTAGAGRSGL-MAKSFAMRLMHMGFNAHIV 69 (186)
T ss_dssp HHHHHHHHHHHHHCSC-EEEECSHHHHH-HHHHHHHHHHHTTCCEEET
T ss_pred HHHHHHHHHHHHcCCe-EEEEecCHHHH-HHHHHHHHHHhcCCeEEEe
Confidence 4578999999998875 77888886543 3334444445788887763
No 194
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=22.72 E-value=1.7e+02 Score=30.11 Aligned_cols=137 Identities=16% Similarity=0.145 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHcCCCEEEecCCCC----------hHHHHHhhhcCCCCeEEe-------cCch-hhHHHhhhhhhhhcCc
Q 007917 29 LGRHLARRLVEIGAKDVFSVPGDF----------NLTLLDHLIAEPELNLVG-------CCNE-LNAGYAADGYARSRGV 90 (585)
Q Consensus 29 ~a~~i~~~L~~~Gv~~vFg~PG~~----------~~~l~~al~~~~~i~~i~-------~~~E-~~A~~~A~gyar~tg~ 90 (585)
....+++.+.+.||+.+..++.+. ...+.+...+ .+++++. ..++ ..++|+. .+.+ |.
T Consensus 76 ~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~-~g~~viGPnc~Gv~~~~~~~~~~~~~-~~~~--G~ 151 (457)
T 2csu_A 76 FVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHK-YGMRIIGPNCVGIMNTHVDLNATFIT-VAKK--GN 151 (457)
T ss_dssp HHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHH-HTCEEECSSCCEEEEGGGTEEEESSC-CCEE--CS
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHH-cCCEEEcCCcceEEccCCCceeeecC-CCCC--CC
Confidence 334456777788999988877543 3445555543 3566652 2233 3344443 2333 76
Q ss_pred cEEEEeCCcchHHHHHHHHHhhhcCCc--EEEEeCCCCCccCCCccceeeccCCCChHHHHHHhhh--cee----EEEEe
Q 007917 91 GACVVTFTVGGLSVLNAIAGAYSENLP--VICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQA--ITC----SQAVV 162 (585)
Q Consensus 91 ~v~~~t~GpG~~n~~~gl~~A~~~~~P--ll~I~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~k----~~~~v 162 (585)
-.++..||.....++.-+ ...++. -.+=+|..+. -++.|.++.|.. -|| |...+
T Consensus 152 v~~vsqSG~~~~~~~~~~---~~~g~G~s~~vs~G~~~~---------------~~~~d~l~~~~~D~~t~~I~l~~E~i 213 (457)
T 2csu_A 152 VAFISQSGALGAGIVYKT---IKEDIGFSKFISVGNMAD---------------VDFAELMEYLADTEEDKAIALYIEGV 213 (457)
T ss_dssp EEEEESCHHHHHHHHHHH---HHTTCEESEEEECTTCCS---------------SCHHHHHHHHTTCSSCCEEEEEESCC
T ss_pred EEEEeCCHHHHHHHHHHH---HhcCCCeeEEEECCCcCC---------------CCHHHHHHHHhcCCCCCEEEEEEecC
Confidence 666777775544443333 333443 2333333221 124566666643 333 44334
Q ss_pred cCcchhHHHHHHHHHHhhhcCCcEEEEecC
Q 007917 163 NNLGDAHELIDTAISTALKESKPVYISISC 192 (585)
Q Consensus 163 ~~~~~~~~~l~~A~~~a~~~~gPV~i~iP~ 192 (585)
.++... .+|.+.+. ..+||.+-..-
T Consensus 214 ~~~~~f----~~~a~~~~-~~KPVv~~k~G 238 (457)
T 2csu_A 214 RNGKKF----MEVAKRVT-KKKPIIALKAG 238 (457)
T ss_dssp SCHHHH----HHHHHHHH-HHSCEEEEECC
T ss_pred CCHHHH----HHHHHHhc-CCCCEEEEEcC
Confidence 444333 33444442 35899887763
No 195
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=22.56 E-value=72 Score=32.90 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=21.5
Q ss_pred cEEEEeCCcchHHHHHHHHHhhhcCCcEEEEeC
Q 007917 91 GACVVTFTVGGLSVLNAIAGAYSENLPVICIVG 123 (585)
Q Consensus 91 ~v~~~t~GpG~~n~~~gl~~A~~~~~Pll~I~g 123 (585)
++++++.| .+.+.||...++|+|++--
T Consensus 347 ~~fvtH~G------~~S~~Eal~~GvP~i~~P~ 373 (454)
T 3hbf_A 347 GVFLTHSG------WNSVLECIVGGVPMISRPF 373 (454)
T ss_dssp EEEEECCC------HHHHHHHHHHTCCEEECCC
T ss_pred CeEEecCC------cchHHHHHHcCCCEecCcc
Confidence 46777777 5678899999999999864
No 196
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=22.50 E-value=1.3e+02 Score=26.32 Aligned_cols=82 Identities=22% Similarity=0.269 Sum_probs=50.3
Q ss_pred ccccccCCcccHHHHHHHHHHHcCCCEEEecCCCChHH-HHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCccEEEEe
Q 007917 18 APVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLT-LLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVT 96 (585)
Q Consensus 18 ~~~~~~~~~~~~a~~i~~~L~~~Gv~~vFg~PG~~~~~-l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t 96 (585)
.=..|...-+...+-.++.|++.||.+=.++-|-|=+| -+..+.+. ++..|.-|+|+
T Consensus 16 ~IimGS~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~---------------------a~~~g~~ViIa- 73 (173)
T 4grd_A 16 GVLMGSSSDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEK---------------------ARERGLRAIIA- 73 (173)
T ss_dssp EEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHH---------------------HTTTTCSEEEE-
T ss_pred EEEeCcHhHHHHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHH---------------------HHhcCCeEEEE-
Confidence 33445555678889999999999999999998876332 22222110 11122234443
Q ss_pred CCcchHHHHHHHHHhhhcCCcEEEEeC
Q 007917 97 FTVGGLSVLNAIAGAYSENLPVICIVG 123 (585)
Q Consensus 97 ~GpG~~n~~~gl~~A~~~~~Pll~I~g 123 (585)
+.|..+.++|+..+.. ..|||-+--
T Consensus 74 -~AG~aahLpgvvA~~t-~~PVIgVPv 98 (173)
T 4grd_A 74 -GAGGAAHLPGMLAAKT-TVPVLGVPV 98 (173)
T ss_dssp -EEESSCCHHHHHHHHC-CSCEEEEEE
T ss_pred -eccccccchhhheecC-CCCEEEEEc
Confidence 4455677788877654 677777654
No 197
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=22.45 E-value=1.5e+02 Score=25.63 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEE
Q 007917 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268 (585)
Q Consensus 222 ~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~ 268 (585)
.+.+++++++|.+++ -++++|.|.... ....+.....++|.++..
T Consensus 26 ~~~l~~~~~~i~~a~-~I~i~G~G~S~~-~a~~~~~~l~~~g~~~~~ 70 (187)
T 3sho_A 26 PEAIEAAVEAICRAD-HVIVVGMGFSAA-VAVFLGHGLNSLGIRTTV 70 (187)
T ss_dssp HHHHHHHHHHHHHCS-EEEEECCGGGHH-HHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHhCC-EEEEEecCchHH-HHHHHHHHHHhcCCCEEE
Confidence 467899999999986 588888887553 444555555678888876
No 198
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=22.41 E-value=4.5e+02 Score=29.55 Aligned_cols=172 Identities=14% Similarity=0.025 Sum_probs=89.2
Q ss_pred EecCchhhH-H---HhhhhhhhhcC-c-cEEEEeCCcchHHHHHHHHHh-hhcCCcEEEEeCCCCCccCCCccceeeccC
Q 007917 69 VGCCNELNA-G---YAADGYARSRG-V-GACVVTFTVGGLSVLNAIAGA-YSENLPVICIVGGPNSNDYGTNRILHHTIG 141 (585)
Q Consensus 69 i~~~~E~~A-~---~~A~gyar~tg-~-~v~~~t~GpG~~n~~~gl~~A-~~~~~Pll~I~g~~~~~~~~~~~~~~~~~~ 141 (585)
-....|++| + .+|.|||...+ . .+++..+-=+..-+..-+..+ .+.+.++++ ++.......+.+...|+
T Consensus 566 d~GIaE~~a~~~~~g~a~GlA~~G~~~~P~~~~ys~F~~qRa~Dqi~~~~d~~~~~v~l-~~~~~~~~~g~dG~tHq--- 641 (886)
T 2qtc_A 566 QEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFLI-GGTSGRTTLNGEGLQHE--- 641 (886)
T ss_dssp ECCSCHHHHHHHHHHHHTHHHHTSCCCEEEEEEEGGGSHHHHHHHHHHHHHTTCCCEEE-EESCSTTTSTTTCTTTC---
T ss_pred eeccCchhhhhHHHHHHHHHHhcCCCceEEEEEehHHHHHHHHHHHHHHHHHhcCCEEE-EEecCcccCCCCCCccC---
Confidence 458899997 4 68999999873 4 665544332222233333333 233445444 34322222222222332
Q ss_pred CCChHHHHHHhhhcee-EEEEecCcchhHHHHHHHHHHhhhcCCc----EEEEecCCCCCCCCCCCCCCCCCccCCCCCC
Q 007917 142 LPDFTQELRCFQAITC-SQAVVNNLGDAHELIDTAISTALKESKP----VYISISCNLPGIPHPTFARDPVPFFLAPKVS 216 (585)
Q Consensus 142 ~~~~~d~~~~~~~~~k-~~~~v~~~~~~~~~l~~A~~~a~~~~gP----V~i~iP~dv~~~~~~~~~~~~~~~~~~~~~~ 216 (585)
......+++.+.- ..+...++.++..+++.|++.. .|| |+|.+|..-+. ... +..+ ..
T Consensus 642 ---~~~~~a~lr~iPnl~V~~Pada~E~~~~l~~al~~~---~gP~~e~v~i~~~r~~~~----~~~-p~~~-----~~- 704 (886)
T 2qtc_A 642 ---DGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERM---YGEKQENVYYYITTLNEN----YHM-PAMP-----EG- 704 (886)
T ss_dssp ---CSCHHHHHTTSTTEEEECCSSHHHHHHHHHHHHHHH---HSTTCCCCEEEEECCSCC----BCC-CCCC-----TT-
T ss_pred ---CcchHHHHhhCCCCEEEecCCHHHHHHHHHHHHHhc---CCCCCceEEEEEeCCccc----cCC-CCCC-----cc-
Confidence 2123567777644 3445567777778887777643 367 99999864311 100 0000 00
Q ss_pred ChhhHHHHHHHHHHHHHhc---CCCEEEeCcccchhchHHHHHHHHHHhCCC
Q 007917 217 NQLGLEAAVEATADFLNKA---VKPVLVGGPNIRVAKAQKAFIELADATGYP 265 (585)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~a---~rpvIi~G~g~~~~~a~~~l~~lae~l~~P 265 (585)
....+-.-+..+... +.-+.|++.|.-...+.++...|++.+|+.
T Consensus 705 ----~~~~~~gga~vlr~g~~~~~dVtLia~G~~v~~al~AAe~L~~e~GI~ 752 (886)
T 2qtc_A 705 ----AEEGIRKGIYKLETIEGSKGKVQLLGSGSILRHVREAAEILAKDYGVG 752 (886)
T ss_dssp ----CHHHHHHTCEEEEEECCSSEEEEEEECGGGHHHHHHHHHHHHHHHCEE
T ss_pred ----hhhhccCceEEEEecCCCCCCEEEEeCcHHHHHHHHHHHHHhhhhCCc
Confidence 001110111122222 145888888887767778888888876643
No 199
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=22.29 E-value=40 Score=30.00 Aligned_cols=26 Identities=19% Similarity=0.232 Sum_probs=0.0
Q ss_pred EEEEEcCchhH------hHHHHH-HhCCCeEEE
Q 007917 460 VIACIGDGSFQ------EISTMI-RCGQRSIIF 485 (585)
Q Consensus 460 vv~v~GDGsf~------eL~ta~-~~~lpv~iv 485 (585)
+|+++|+-+-. |+.+|+ +.++||++|
T Consensus 83 vIllIs~~T~~s~~v~wEIe~Ai~~~~~PII~V 115 (189)
T 3hyn_A 83 IILFLSSITANSRALREEMNYGIGTKGLPVIVI 115 (189)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHTTTTCCCEEEE
T ss_pred EEEEEecCccccchhHHHHHHHHHhcCCcEEEE
No 200
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=22.21 E-value=2.5e+02 Score=26.18 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCCC--EEEeCcccchhchHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHh
Q 007917 223 AAVEATADFLNKAVKP--VLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIV 300 (585)
Q Consensus 223 ~~~~~~~~~l~~a~rp--vIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l 300 (585)
..+..|+..+....+| ++++|..- .+.+.+.++|++.|.+.++.-.-.|.|- +.. ...+
T Consensus 55 ~~L~~A~~~i~~i~~~~~vlfVgTk~---~~q~~V~k~A~~~g~~~v~~rwlgGtLT---------------N~~-t~~f 115 (252)
T 3u5c_A 55 EKLVLAARIIAAIPNPEDVVAISSRT---FGQRAVLKFAAHTGATPIAGRFTPGSFT---------------NYI-TRSF 115 (252)
T ss_dssp HHHHHHHHHHTTSSSGGGEEEEECSH---HHHHHHHHHHHHSSCEEEESCCCTTSSS---------------CTT-STTC
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCc---HHHHHHHHHHHHhCCceecCcccCCccc---------------Chh-hhhc
Confidence 4577777877765443 77777542 4778999999999998887432223221 110 0235
Q ss_pred hhCCEEEEeCCccC
Q 007917 301 ESADAYVFVGPIFN 314 (585)
Q Consensus 301 ~~aD~vl~lG~~~~ 314 (585)
..+|+|+++..+-+
T Consensus 116 ~~PdllvV~Dp~~d 129 (252)
T 3u5c_A 116 KEPRLVIVTDPRSD 129 (252)
T ss_dssp CCCSEEEESCTTTT
T ss_pred cCCceEEEeCCccc
Confidence 78999999987643
No 201
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=22.14 E-value=65 Score=29.74 Aligned_cols=60 Identities=15% Similarity=0.243 Sum_probs=36.2
Q ss_pred CCeeEeccCcccccchHHHHHHHhhhcCCCcEEEEEcCchhH--------------hHHHHHHhCCCeEEEEEeCCce
Q 007917 429 NCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQ--------------EISTMIRCGQRSIIFLINNGGY 492 (585)
Q Consensus 429 ~~~~~~~~~~g~mG~~lpaAiGaalA~p~~~vv~v~GDGsf~--------------eL~ta~~~~lpv~ivV~NN~~~ 492 (585)
+.+|++|.+.|.||+++.-++.. .+-.|+.+.|+.+.. ++..++....+-.=+++||.+-
T Consensus 24 pVR~itN~SSg~iG~aiA~~~~~----~Ga~V~l~~~~~~l~~~~g~~~~dv~~~~~~~~~v~~~~~~~Dili~~Aav 97 (226)
T 1u7z_A 24 PVRYISDHSSGKMGFAIAAAAAR----RGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNASVQQQNIFIGCAAV 97 (226)
T ss_dssp SSEEEEECCCSHHHHHHHHHHHH----TTCEEEEEECSCCCCCCTTEEEEECCSHHHHHHHHHHHGGGCSEEEECCBC
T ss_pred ceeeccCCCccHHHHHHHHHHHH----CCCEEEEEECCcccccCCCCeEEccCcHHHHHHHHHHhcCCCCEEEECCcc
Confidence 45699999999998887665533 345677776654310 5555443333223356677764
No 202
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=21.93 E-value=3.4e+02 Score=23.12 Aligned_cols=94 Identities=12% Similarity=0.077 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcC-CCEEEecCCCChHH--HHHhhhcCCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcc-hHHHH
Q 007917 30 GRHLARRLVEIG-AKDVFSVPGDFNLT--LLDHLIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVG-GLSVL 105 (585)
Q Consensus 30 a~~i~~~L~~~G-v~~vFg~PG~~~~~--l~~al~~~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG-~~n~~ 105 (585)
-+.+++.|.+.+ -=++||+-++.... +...|.+ -++.++...+.. ... .-....+..-++++.|-.| ..+.+
T Consensus 38 i~~~~~~i~~a~~~I~i~G~G~S~~~a~~~~~~l~~-~g~~~~~~~~~~-~~~--~~~~~~~~~d~vI~iS~sG~t~~~~ 113 (183)
T 2xhz_A 38 FTLACEKMFWCKGKVVVMGMGASGHIGRKMAATFAS-TGTPSFFVHPGE-AAH--GDLGMVTPQDVVIAISNSGESSEIT 113 (183)
T ss_dssp HHHHHHHHHTCSSCEEEEECHHHHHHHHHHHHHHHT-TTCCEEECCTTH-HHH--HTSTTCCTTCEEEEECSSSCCHHHH
T ss_pred HHHHHHHHHhCCCeEEEEeecHHHHHHHHHHHHHHh-cCceEEEeCchH-Hhh--hhhccCCCCCEEEEEeCCCCCHHHH
Confidence 356677887775 55666664443222 1222332 245554443211 111 1112233335666666666 45578
Q ss_pred HHHHHhhhcCCcEEEEeCCCCC
Q 007917 106 NAIAGAYSENLPVICIVGGPNS 127 (585)
Q Consensus 106 ~gl~~A~~~~~Pll~I~g~~~~ 127 (585)
..+..|...+.|+|+||+....
T Consensus 114 ~~~~~ak~~g~~vi~IT~~~~s 135 (183)
T 2xhz_A 114 ALIPVLKRLHVPLICITGRPES 135 (183)
T ss_dssp HHHHHHHTTTCCEEEEESCTTS
T ss_pred HHHHHHHHCCCCEEEEECCCCC
Confidence 8888899999999999997543
No 203
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=21.89 E-value=73 Score=25.79 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=42.7
Q ss_pred chHHHHHHHHHHhCCCeEEccCCccCCCCCCCCceeeecCCCCCHHHHHHhhhCCEEEEeCCccC-CcccccccccCCCc
Q 007917 250 KAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFN-DYSSVGYSLLIKKE 328 (585)
Q Consensus 250 ~a~~~l~~lae~l~~Pv~~t~~gkg~~~~~hp~~~G~~~g~~~~~~~~~~l~~aD~vl~lG~~~~-~~~~~~~~~~~~~~ 328 (585)
=+.+.|++-|+++|+.+-....|.. |. ...+ ..+-+.+||+||+.+..-. +.. .| .+.
T Consensus 23 MAAeaL~~aA~~~G~~ikVEtqGs~----------G~-~n~L----t~~~I~~Ad~VIiA~d~~v~~~~-----RF-~GK 81 (111)
T 2kyr_A 23 MAAQALEEAAVEAGYEVKIETQGAD----------GI-QNRL----TAQDIAEATIIIHSVAVTPEDNE-----RF-ESR 81 (111)
T ss_dssp HHHHHHHHHHHHTSSEEEEEEEETT----------EE-ESCC----CHHHHHHCSEEEEEESSCCTTGG-----GG-TTS
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCC----------Cc-CCCC----CHHHHHhCCEEEEEeCCCcCchh-----hc-CCC
Confidence 3789999999999999988665531 21 1111 2356789999999985432 121 12 234
Q ss_pred ceEEEcCCc
Q 007917 329 KAIIVQPHR 337 (585)
Q Consensus 329 ~~i~id~~~ 337 (585)
+++++++..
T Consensus 82 ~v~~~~v~~ 90 (111)
T 2kyr_A 82 DVYEITLQD 90 (111)
T ss_dssp CEEEEETTH
T ss_pred eEEEeCHHH
Confidence 677776654
No 204
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=21.42 E-value=2.3e+02 Score=24.81 Aligned_cols=92 Identities=13% Similarity=0.040 Sum_probs=53.5
Q ss_pred HHHHHHHHHHc-CCCEEEecCCCChHHHHHh----hhcCCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcch-HH
Q 007917 30 GRHLARRLVEI-GAKDVFSVPGDFNLTLLDH----LIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGG-LS 103 (585)
Q Consensus 30 a~~i~~~L~~~-Gv~~vFg~PG~~~~~l~~a----l~~~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~-~n 103 (585)
-+.+++.|.+. +-=++||+-++ ..+... |.+ -++..+.... .-++..-.+..+..-++++.|..|- .+
T Consensus 34 i~~~~~~i~~a~~~I~i~G~G~S--~~~A~~~~~~l~~-~g~~~~~~~~---~~~~~~~~~~~~~~dvvI~iS~sG~t~~ 107 (201)
T 3fxa_A 34 LVKTVEKIAECTGKIVVAGCGTS--GVAAKKLVHSFNC-IERPAVFLTP---SDAVHGTLGVLQKEDILILISKGGNTGE 107 (201)
T ss_dssp HHHHHHHHHHCSSCEEEECCTHH--HHHHHHHHHHHHH-TTCCEEECCH---HHHTTTGGGGCCTTCEEEEECSSSCCHH
T ss_pred HHHHHHHHHhcCCcEEEEEecHH--HHHHHHHHHHHHh-cCCcEEEeCc---hHHHhhhhhcCCCCCEEEEEeCCCCCHH
Confidence 35677888887 46677776433 333332 233 2555554422 1122222233444456666666664 45
Q ss_pred HHHHHHHhhhcCCcEEEEeCCCCC
Q 007917 104 VLNAIAGAYSENLPVICIVGGPNS 127 (585)
Q Consensus 104 ~~~gl~~A~~~~~Pll~I~g~~~~ 127 (585)
.+..+..|...+.++|.||+....
T Consensus 108 ~~~~~~~ak~~g~~vi~IT~~~~s 131 (201)
T 3fxa_A 108 LLNLIPACKTKGSTLIGVTENPDS 131 (201)
T ss_dssp HHTTHHHHHHHTCEEEEEESCTTS
T ss_pred HHHHHHHHHHcCCeEEEEECCCCC
Confidence 777788899999999999986433
No 205
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=20.62 E-value=2e+02 Score=21.91 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=26.2
Q ss_pred cEEEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCC
Q 007917 526 WTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHK 560 (585)
Q Consensus 526 ~~~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~ 560 (585)
....+.+.+++.+.++.+.. .++++||....+.
T Consensus 5 ~v~~i~~~~~~~~~~~~~~~--~~~~~vv~f~~~~ 37 (113)
T 1ti3_A 5 QVIACHTVDTWKEHFEKGKG--SQKLIVVDFTASW 37 (113)
T ss_dssp CEEEECSHHHHHHHHHHHTT--SSSEEEEEEECSS
T ss_pred ceeEeccHHHHHHHHHHhhh--cCCeEEEEEECCC
Confidence 56778889999999988764 6789998887753
No 206
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=20.60 E-value=1.6e+02 Score=26.05 Aligned_cols=80 Identities=10% Similarity=0.016 Sum_probs=43.2
Q ss_pred CCcEEEEEcCchhH------hHHHHHHhCCCeEEEEEeCCceeeeeeecCCCCC----------CCCCCCHHHHHHHhcC
Q 007917 457 DKRVIACIGDGSFQ------EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYN----------VIKNWDYTGLVNAIHN 520 (585)
Q Consensus 457 ~~~vv~v~GDGsf~------eL~ta~~~~lpv~ivV~NN~~~~~~~~~~~~~~~----------~~~~~d~~~la~a~G~ 520 (585)
.+++|.++.||--. .+..+.+.++++.+|-+-+....-......+.|. ....--+.++|+.-|+
T Consensus 111 ~~~~ivllTDG~~~~~~~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG 190 (218)
T 3ibs_A 111 VGRAIIVITDGENHEGGAVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKG 190 (218)
T ss_dssp CCEEEEEEECCTTCCSCHHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEE
T ss_pred CCcEEEEEcCCCCCCCcHHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCceeEcCCCCEeEecCCHHHHHHHHHhcCC
Confidence 45799999999765 2233345666766666654321110000000110 1111236778999998
Q ss_pred CCCCccEEEecC-HHHHHHHHH
Q 007917 521 GEGKCWTAKVRS-EDELTEAMK 541 (585)
Q Consensus 521 ~~~~~~~~~v~~-~~eL~~al~ 541 (585)
.++.+.+ .+.+...++
T Consensus 191 -----~~~~~~~~~~~~~~~~~ 207 (218)
T 3ibs_A 191 -----IYVRVDNSNSAQKAISQ 207 (218)
T ss_dssp -----EEEEECSSSHHHHHHHH
T ss_pred -----EEEECCCChHHHHHHHH
Confidence 8888887 444444443
No 207
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=20.49 E-value=1.8e+02 Score=22.66 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=26.7
Q ss_pred EEecCHHHHHHHHHHhhhcCCCCeEEEEEEcCCCCChHHHHHHHHhhh
Q 007917 528 AKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVS 575 (585)
Q Consensus 528 ~~v~~~~eL~~al~~a~~~~~~gp~vIeV~v~~~~~~~~~~~~~~~~~ 575 (585)
+.|.+.+++.+.|.++ .++++||+...+-=..-..+...+.++.
T Consensus 3 ~~i~~~~~f~~~l~~~----~~k~vvv~F~a~wC~~C~~~~p~~~~~~ 46 (105)
T 3zzx_A 3 YQVKDQEDFTKQLNEA----GNKLVVIDFYATWCGPCKMIAPKLEELS 46 (105)
T ss_dssp EECCSHHHHHHHHHHT----TTSEEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHhc----CCCEEEEEEECCCCCCccCCCcchhhhh
Confidence 3567888888888764 4678888887664333333444444443
No 208
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=20.31 E-value=88 Score=30.51 Aligned_cols=30 Identities=23% Similarity=0.184 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHhcCCCEEEeCcccch
Q 007917 219 LGLEAAVEATADFLNKAVKPVLVGGPNIRV 248 (585)
Q Consensus 219 ~~~~~~~~~~~~~l~~a~rpvIi~G~g~~~ 248 (585)
......+++++++|.++++.|++.|.|+..
T Consensus 28 ~~l~~~i~~l~~~i~~a~~ivvlTGAGISt 57 (318)
T 3k35_A 28 EELERKVWELARLVWQSSSVVFHTGAGIST 57 (318)
T ss_dssp HHHHHHHHHHHHHHHHCSCEEEEECGGGSG
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeccccCh
Confidence 345677899999999999999999999864
No 209
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=20.25 E-value=2.2e+02 Score=25.15 Aligned_cols=86 Identities=14% Similarity=0.034 Sum_probs=51.6
Q ss_pred HHHHHHHHHcCCCEEEecCCCChHHHHHh----hhcCCCCeEEecCchhhHHHhhhhhhhhcCccEEEEeCCcch-HHHH
Q 007917 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDH----LIAEPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGG-LSVL 105 (585)
Q Consensus 31 ~~i~~~L~~~Gv~~vFg~PG~~~~~l~~a----l~~~~~i~~i~~~~E~~A~~~A~gyar~tg~~v~~~t~GpG~-~n~~ 105 (585)
+.+++.|.+.+-=++||+-++. .+... |.+ -++.++... +.. ....+..-++++.|..|- ...+
T Consensus 38 ~~~~~~i~~a~~I~i~G~G~S~--~~A~~~~~~l~~-~g~~~~~~~-~~~-------~~~~~~~DvvI~iS~SG~t~~~i 106 (200)
T 1vim_A 38 GEMIKLIDSARSIFVIGAGRSG--YIAKAFAMRLMH-LGYTVYVVG-ETV-------TPRITDQDVLVGISGSGETTSVV 106 (200)
T ss_dssp HHHHHHHHHSSCEEEECSHHHH--HHHHHHHHHHHH-TTCCEEETT-STT-------CCCCCTTCEEEEECSSSCCHHHH
T ss_pred HHHHHHHhcCCEEEEEEecHHH--HHHHHHHHHHHh-cCCeEEEeC-Ccc-------ccCCCCCCEEEEEeCCCCcHHHH
Confidence 6678888888755666664332 23332 222 244444432 211 012222356666677774 4477
Q ss_pred HHHHHhhhcCCcEEEEeCCCCC
Q 007917 106 NAIAGAYSENLPVICIVGGPNS 127 (585)
Q Consensus 106 ~gl~~A~~~~~Pll~I~g~~~~ 127 (585)
..+..|...++|+|+||+....
T Consensus 107 ~~~~~ak~~g~~vI~IT~~~~s 128 (200)
T 1vim_A 107 NISKKAKDIGSKLVAVTGKRDS 128 (200)
T ss_dssp HHHHHHHHHTCEEEEEESCTTS
T ss_pred HHHHHHHHCCCeEEEEECCCCC
Confidence 7888899999999999997543
No 210
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=20.13 E-value=4.4e+02 Score=23.04 Aligned_cols=46 Identities=17% Similarity=0.212 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHHHhCCCeEEc
Q 007917 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIM 269 (585)
Q Consensus 222 ~~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae~l~~Pv~~t 269 (585)
.+.++++++.|.+++| ++++|.|....-+.....+| .++|.++...
T Consensus 34 ~~~l~~~~~~i~~a~~-I~i~G~G~S~~~A~~~~~~l-~~~g~~~~~~ 79 (200)
T 1vim_A 34 LETVGEMIKLIDSARS-IFVIGAGRSGYIAKAFAMRL-MHLGYTVYVV 79 (200)
T ss_dssp HHHHHHHHHHHHHSSC-EEEECSHHHHHHHHHHHHHH-HHTTCCEEET
T ss_pred HHHHHHHHHHHhcCCE-EEEEEecHHHHHHHHHHHHH-HhcCCeEEEe
Confidence 4568899999999875 77888886543333333333 5678887763
No 211
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=20.05 E-value=1.1e+02 Score=26.91 Aligned_cols=45 Identities=20% Similarity=0.181 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCCEEEeCcccchhchHHHHHHHHH-----HhCCCeEE
Q 007917 223 AAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELAD-----ATGYPIAI 268 (585)
Q Consensus 223 ~~~~~~~~~l~~a~rpvIi~G~g~~~~~a~~~l~~lae-----~l~~Pv~~ 268 (585)
+.++++++.|.+++| ++++|.|....-+...-.+|.. +.|.|+..
T Consensus 29 ~~~~~~~~~i~~a~~-I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~ 78 (196)
T 2yva_A 29 RAAMTLVQSLLNGNK-ILCCGNGTSAANAQHFAASMINRFETERPSLPAIA 78 (196)
T ss_dssp HHHHHHHHHHHTTCC-EEEEESTHHHHHHHHHHHHHHTCSSSCCCCCCEEE
T ss_pred HHHHHHHHHHHcCCE-EEEEeCchhhHHHHHHHHHHhccccccCCCCceEe
Confidence 678888899988765 7778887654334333344442 56666664
Done!