RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 007917
(585 letters)
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv
flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A
{Acetobacter pasteurianus}
Length = 566
Score = 765 bits (1979), Expect = 0.0
Identities = 235/562 (41%), Positives = 328/562 (58%), Gaps = 11/562 (1%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARS 87
T+G +LA RLV+IG K F+V GD+NL LLD L+ ++ + CCNELN G++A+GYARS
Sbjct: 4 TVGMYLAERLVQIGLKHHFAVAGDYNLVLLDQLLLNKDMKQIYCCNELNCGFSAEGYARS 63
Query: 88 RGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ 147
G A VVTF+VG +S +NA+ GAY+ENLPVI I G PNSND GT ILHHTIG D++
Sbjct: 64 NGAAAAVVTFSVGAISAMNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTDYSY 123
Query: 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPV 207
+L + +TC+ + + A ID I TAL+E KP Y+ I+CN+ P PV
Sbjct: 124 QLEMARQVTCAAESITDAHSAPAKIDHVIRTALRERKPAYLDIACNIAS--EPCVRPGPV 181
Query: 208 PFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267
L+ + L+AAV+AT L K+ PV++ G +R A A A LAD +
Sbjct: 182 SSLLSEPEIDHTSLKAAVDATVALLEKSASPVMLLGSKLRAANALAATETLADKLQCAVT 241
Query: 268 IMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKK 327
IM + KG PE H F G YWG VS+ E+VE++DA + + P+FNDYS+VG+S K
Sbjct: 242 IMAAAKGFFPEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAPVFNDYSTVGWSAWPKG 301
Query: 328 EKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQ 387
I+ +P RVTV G + + FL ALA+K + ++ VP +
Sbjct: 302 PNVILAEPDRVTVD-GRAYDGFTLRAFLQALAEKAPARPAS---AQKSSVPTCSLTATSD 357
Query: 388 NEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGA 447
L + + +HI +L+ +T ++AETGDSWFN ++ LP E +MQ+G IGWSV +
Sbjct: 358 EAGLTNDEIVRHINALLTSNTTLVAETGDSWFNAMRMTLPRGARVELEMQWGHIGWSVPS 417
Query: 448 TLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNGGYTIEVEIHDGPY 503
G A ++D++ + +GDGSFQ E++ M+R IIFLINN GY IE+ IHDGPY
Sbjct: 418 AFGNAMGSQDRQHVVMVGDGSFQLTAQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGPY 477
Query: 504 NVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDT 563
N IKNWDY GL+ + GEG K + ELTEA+ A IE + + D
Sbjct: 478 NYIKNWDYAGLMEVFNAGEGHGLGLKATTPKELTEAIARAK-ANTRGPTLIECQIDRTDC 536
Query: 564 SKELLEWGSRVSAANSRPPNPQ 585
+ L++WG +V++ N+R
Sbjct: 537 TDMLVQWGRKVASTNARKTTLA 558
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase,
flavoprotein, metal-binding, alcohol fermentation; HET:
TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A
3oe1_A* 1zpd_A*
Length = 568
Score = 763 bits (1973), Expect = 0.0
Identities = 238/567 (41%), Positives = 342/567 (60%), Gaps = 13/567 (2%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARS 87
T+G +LA RLV+IG K F+V GD+NL LLD+L+ + V CCNELN G++A+GYAR+
Sbjct: 4 TVGTYLAERLVQIGLKHHFAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARA 63
Query: 88 RGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ 147
+G A VVT++VG LS +AI GAY+ENLPVI I G PN+ND+ +LHH +G D+
Sbjct: 64 KGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHY 123
Query: 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPV 207
+L + IT + + +A ID I TAL+E KPVY+ I+CN+ +P A P
Sbjct: 124 QLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMPCA--APGPA 181
Query: 208 PFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267
+ S++ L AAVE T F+ K ++ G +R A A++A ++ ADA G +A
Sbjct: 182 SALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVA 241
Query: 268 IMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKK 327
M + K PE +PH+IGT WG VS + ++ ADA + + P+FNDYS+ G++ +
Sbjct: 242 TMAAAKSFFPEENPHYIGTSWGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDP 301
Query: 328 EKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPP-GIPVKRA 386
+K ++ +P V V G V + D+L+ LA+K+ K T AL+ ++ +
Sbjct: 302 KKLVLAEPRSVVVN-GIRFPSVHLKDYLTRLAQKVSKKTGALDFFKSLNAGELKKAAPAD 360
Query: 387 QNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVG 446
+ PL + + ++ +L+ +T VIAETGDSWFN Q+++LP E++MQ+G IGWSV
Sbjct: 361 PSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVP 420
Query: 447 ATLGYAQAAKDKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNGGYTIEVEIHDGP 502
A GYA A ++R I +GDGSFQ E++ M+R IIFLINN GYTIEV IHDGP
Sbjct: 421 AAFGYAVGAPERRNILMVGDGSFQLTAQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGP 480
Query: 503 YNVIKNWDYTGLVNAIHNG----EGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFV 558
YN IKNWDY GL+ + G K ++ EL EA+K A D IE F+
Sbjct: 481 YNNIKNWDYAGLMEVFNGNGGYDSGAGKGLKAKTGGELAEAIKVAL-ANTDGPTLIECFI 539
Query: 559 HKDDTSKELLEWGSRVSAANSRPPNPQ 585
++D ++EL++WG RV+AANSR P +
Sbjct: 540 GREDCTEELVKWGKRVAAANSRKPVNK 566
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites,
phenylalanine catabolism, tryptophan catabolism,
thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces
cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A*
2vk4_A* 2vjy_A* 2g1i_A*
Length = 563
Score = 700 bits (1810), Expect = 0.0
Identities = 184/565 (32%), Positives = 279/565 (49%), Gaps = 19/565 (3%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARS 87
TLG++L RL ++ VF +PGDFNL+LLD + + G NELNA YAADGYAR
Sbjct: 5 TLGKYLFERLKQVNVNTVFGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARI 64
Query: 88 RGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ 147
+G+ + TF VG LS LN IAG+Y+E++ V+ +VG P+ + +LHHT+G DFT
Sbjct: 65 KGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGDFTV 124
Query: 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPV 207
R I+ + A++ ++ A ID I T +PVY+ + NL + P
Sbjct: 125 FHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLVDLNVP-AKLLQT 183
Query: 208 PFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267
P ++ K ++ + ++ A PV++ + +L D T +P
Sbjct: 184 PIDMSLKPNDAESEKEVIDTILVLDKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAF 243
Query: 268 IMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKK 327
+ P GKG + E HP + G Y G +S E VESAD + VG + +D+++ +S K
Sbjct: 244 VTPMGKGSIDEQHPRYGGVYVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYKT 303
Query: 328 EKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQ 387
+ + + + N + V M L L + A + Y+ + VP P A
Sbjct: 304 KNIVEFHSDHMKIRNA-TFPGVQMKFVLQKLLTTIAD---AAKGYKPVAVPARTPANAAV 359
Query: 388 --NEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSV 445
+ PL+ ++ + + L VIAETG S F + P N Q+ +GSIG++
Sbjct: 360 PASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNTYGISQVLWGSIGFTT 419
Query: 446 GATLGYAQAAK----DKRVIACIGDGSF----QEISTMIRCGQRSIIFLINNGGYTIEVE 497
GATLG A AA+ KRVI IGDGS QEISTMIR G + +F++NN GYTI+
Sbjct: 420 GATLGAAFAAEEIDPKKRVILFIGDGSLQLTVQEISTMIRWGLKPYLFVLNNDGYTIQKL 479
Query: 498 IH--DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIE 555
IH YN I+ WD+ L+ G T +V + E + + + + IE
Sbjct: 480 IHGPKAQYNEIQGWDHLSLLPTF--GAKDYETHRVATTGEWDKLTQDKSFNDNSKIRMIE 537
Query: 556 VFVHKDDTSKELLEWGSRVSAANSR 580
V + D + L+E +A N++
Sbjct: 538 VMLPVFDAPQNLVEQAKLTAATNAK 562
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate,
indole-3-acetic acid, TDP dependent enzyme, lyase; HET:
TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3
c.36.1.5 c.36.1.9
Length = 552
Score = 680 bits (1758), Expect = 0.0
Identities = 168/559 (30%), Positives = 269/559 (48%), Gaps = 20/559 (3%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARS 87
+ +L RL + GA +F VPGD+NL LDH+I P++ VGC NELNA YAADGYAR
Sbjct: 6 CVADYLLDRLTDCGADHLFGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARC 65
Query: 88 RGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ 147
+G A + TF VG LS +N IAG+Y+E++PV+ IVG P + +LHHT+G +F
Sbjct: 66 KGFAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRH 125
Query: 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPV 207
+ IT +QAV+ +E ID ++T L+E +P Y+ + + +
Sbjct: 126 FYHMSEPITVAQAVLTEQNACYE-IDRVLTTMLRERRPGYLMLPAD---VAKKAATPPVN 181
Query: 208 PFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267
++ L+A +A + L + + L+ + + A + A
Sbjct: 182 ALTHKQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHA 241
Query: 268 IMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKK 327
M GKG+ E F GTY G+ S+ E +E AD + VG F D + G++ +
Sbjct: 242 TMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVGTRFTDTLTAGFTHQLTP 301
Query: 328 EKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQ 387
+ I VQPH VG+ + M + L + +++ A + G
Sbjct: 302 AQTIEVQPHAARVGD-VWFTGIPMNQAIETLVELCKQHVHA----GLMSSSSGAIPFPQP 356
Query: 388 NEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGA 447
+ L ++ +Q + ++A+ G S F LRLP + + Q +GSIG+++ A
Sbjct: 357 DGSLTQENFWRTLQTFIRPGDIILADQGTSAFGAIDLRLPADVNFIVQPLWGSIGYTLAA 416
Query: 448 TLGYAQAAKDKRVIACIGDGSF----QEISTMIRCGQRSIIFLINNGGYTIEVEIHDGP- 502
G A ++RVI GDG+ QE+ +M+R Q II ++NN GYT+E IH
Sbjct: 417 AFGAQTACPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQ 476
Query: 503 -YNVIKNWDYTGLVNAIH-NGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHK 560
YN I W++T + A+ + + +CW +V ++L + ++ + L IEV + K
Sbjct: 477 RYNDIALWNWTHIPQALSLDPQSECW--RVSEAEQLADVLEKV--AHHERLSLIEVMLPK 532
Query: 561 DDTSKELLEWGSRVSAANS 579
D L + A N+
Sbjct: 533 ADIPPLLGALTKALEACNN 551
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein,
THDP-dependent enzymes, thiamine pyrophosphate, lyase;
HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Length = 570
Score = 677 bits (1749), Expect = 0.0
Identities = 170/557 (30%), Positives = 268/557 (48%), Gaps = 19/557 (3%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARS 87
T+G +L RL E+G +++F VPGD+NL LD +I+ ++ +G NELNA Y ADGYAR+
Sbjct: 26 TVGDYLLDRLHELGIEEIFGVPGDYNLQFLDQIISREDMKWIGNANELNASYMADGYART 85
Query: 88 RGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQ 147
+ A + TF VG LS +N +AG+Y+ENLPV+ IVG P S + +HHT+ DF
Sbjct: 86 KKAAAFLTTFGVGELSAINGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGDFKH 145
Query: 148 ELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTFARDPV 207
++ + +T ++ ++ +A ID +S LKE KPVYI++ ++ A P
Sbjct: 146 FMKMHEPVTAARTLLTAE-NATYEIDRVLSQLLKERKPVYINLPVDV----AAAKAEKPA 200
Query: 208 PFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIA 267
+ + + + L A KPV++ G + +K + T PI
Sbjct: 201 LSLEKESSTTNTTEQVILSKIEESLKNAQKPVVIAGHEVISFGLEKTVTQFVSETKLPIT 260
Query: 268 IMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKK 327
+ GK V E P F+G Y G +S VESAD + +G D S+ ++ + +
Sbjct: 261 TLNFGKSAVDESLPSFLGIYNGKLSEISLKNFVESADFILMLGVKLTDSSTGAFTHHLDE 320
Query: 328 EKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQ 387
K I + + N +S+L++ Y Y+
Sbjct: 321 NKMISLNIDEGIIFNKVVED-FDFRAVVSSLSELKGI------EYEGQYIDKQYEEFIPS 373
Query: 388 NEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGA 447
+ PL + L++ ++ + + ++AE G S+F + L N + Q +GSIG++ A
Sbjct: 374 SAPLSQDRLWQAVESLTQSNETIVAEQGTSFFGASTIFLKSNSRFIGQPLWGSIGYTFPA 433
Query: 448 TLGYAQAAKDKRVIACIGDGSF----QEISTMIRCGQRSIIFLINNGGYTIEVEIHDG-- 501
LG A K+ R + IGDGS QE+ IR I F+INN GYT+E EIH
Sbjct: 434 ALGSQIADKESRHLLFIGDGSLQLTVQELGLSIREKLNPICFIINNDGYTVEREIHGPTQ 493
Query: 502 PYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKD 561
YN I W+Y+ L E + + VR+E+E MK A + + +IE+ + K+
Sbjct: 494 SYNDIPMWNYSKLPETFGATEDRVVSKIVRTENEFVSVMKEAQ-ADVNRMYWIELVLEKE 552
Query: 562 DTSKELLEWGSRVSAAN 578
D K L + G + N
Sbjct: 553 DAPKLLKKMGKLFAEQN 569
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric
dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A
{Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A*
2q5q_A*
Length = 565
Score = 456 bits (1175), Expect = e-155
Identities = 136/583 (23%), Positives = 227/583 (38%), Gaps = 27/583 (4%)
Query: 7 MGSTGQPGSAPAPVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPEL 66
MGS+ + + S L L R L + GA+ +F +PGDF L L
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMKLAEALLRALKDRGAQAMFGIPGDFALPFFKVAEETQIL 60
Query: 67 NLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGP 125
L +E G+AAD AR +G VT+ G +++NA+AGAY+E PV+ I G P
Sbjct: 61 PLHTLSHEPAVGFAADAAARYSSTLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGAP 120
Query: 126 NSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKP 185
+ + +LHH D + F+ IT +QA +++ A I + A +S+P
Sbjct: 121 GTTEGNAGLLLHHQGRTLDTQ--FQVFKEITVAQARLDDPAKAPAEIARVLGAARAQSRP 178
Query: 186 VYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPN 245
VY+ I N+ DP ++ L A + + A PVL+
Sbjct: 179 VYLEIPRNMVNAEVEPVGDDP------AWPVDRDALAACADEVLAAMRSATSPVLMVCVE 232
Query: 246 IRVAKAQKAFIELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADA 305
+R + ELA G P+ G+GL+ + +GTY G + +VE +D
Sbjct: 233 VRRYGLEAKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYIGVAGDAEITRLVEESDG 292
Query: 306 YVFVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKN 365
+G I +D + I K I VT+G + +A + AL ++L +
Sbjct: 293 LFLLGAILSDTNFAVSQRKIDLRKTIHAFDRAVTLGYHTYAD-IPLAGLVDALLERLPPS 351
Query: 366 TTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLR 425
P G+ P+ + + A+ GD F +
Sbjct: 352 DRTTRGKEPHAYPTGLQADGEPIAPMDIARAVNDRVRAGQEPLLIAADMGDCLFTAMDMI 411
Query: 426 LPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF----QEISTMIRCGQR 481
+ G Y +G+ V A +G + KR++ +GDG+F E+ R G
Sbjct: 412 ---DAGLMAPGYYAGMGFGVPAGIGAQCVSGGKRILTVVGDGAFQMTGWELGNCRRLGID 468
Query: 482 SIIFLINNGGYTIEVEIH-DGPYNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAM 540
I+ L NN + + + +N + +W + + + +VR+ EL A+
Sbjct: 469 PIVILFNNASWEMLRTFQPESAFNDLDDWRFADMAAGMG-----GDGVRVRTRAELKAAL 523
Query: 541 KTATGEQKDSLCFIEVFVHKDDTS---KELLEWGSRVSAANSR 580
A + IE + + S ++ R+ AA
Sbjct: 524 DKAF-ATRGRFQLIEAMIPRGVLSDTLARFVQGQKRLHAAPRE 565
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate
synthase; transferase, metal-binding; HET: TPP; 2.35A
{Bacillus subtilis}
Length = 604
Score = 134 bits (340), Expect = 1e-33
Identities = 86/589 (14%), Positives = 180/589 (30%), Gaps = 56/589 (9%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARS 87
G D PG + L A P++++ +E +AG+ A G A++
Sbjct: 32 HYIGSFIDEFALSGITDAVVCPGSRSTPLAVLCAAHPDISVHVQIDERSAGFFALGLAKA 91
Query: 88 RG-VGACVVTFTVGGLSVLN---AIAGAYSENLPVICIVG--GPNSNDYGTNRILHHTIG 141
+ + T G + N A+ A+ +P+I + + G + ++
Sbjct: 92 KQRPVLLICT---SGTAAANFYPAVVEAHYSRVPIIVLTADRPHELREVGAPQAINQH-F 147
Query: 142 LPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK-PVYISISCNLPGIPHP 200
L F ++ F + L L A A K PV++++ P +P
Sbjct: 148 L--FGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLREPLMPDL 205
Query: 201 T---FARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIE 257
+ F R ++ K Q ++ A+ L +A K ++V G + ++ I
Sbjct: 206 SDEPFGRMRTGRHVSVKTGTQSVDRESLSDVAEMLAEAEKGMIVCGE-LHSDADKENIIA 264
Query: 258 LADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFNDYS 317
L+ A YPI P H + + + + D + GP+
Sbjct: 265 LSKALQYPILADPLSNLRNGVHDKSTVIDAYDSFLKDDELKRKLRPDVVIRFGPMPVSKP 324
Query: 318 SVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMAD---FLSALAKKLRKNT-------- 366
+ + I++ + + + F + L T
Sbjct: 325 VFLWLKDDPTIQQIVIDEDGGWRDPTQASAHMIHCNASVFAEEIMAGLTAATRSSEWLEK 384
Query: 367 -TALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLR 425
+ R ++ + + L++ +Q ++ ++++ +
Sbjct: 385 WQFVNGRFREHLQ-----TISSEDVSFEGNLYRILQHLVPENSSLFVGNSMPIRDVDTFF 439
Query: 426 LPENCGYEFQMQYGS--IGWSVGATLGYAQAAKDKRVIACIGDGSF----QEISTMIRCG 479
++ + G+ I V + +G V IGD SF + + G
Sbjct: 440 EKQDRPFRIYSNRGANGIDGVVSSAMGVC-EGTKAPVTLVIGDLSFYHDLNGLLAAKKLG 498
Query: 480 QRSIIFLINNGGYTI----EVEIHDGPYNVI----KNWDYTGLVNAIHNGEGKCWTAKVR 531
+ L+NN G I + + D+ + G +
Sbjct: 499 IPLTVILVNNDGGGIFSFLPQASEKTHFEDLFGTPTGLDFKHAAAL-YGGTY----SCPA 553
Query: 532 SEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAANSR 580
S DE A + L IE+ + + + + +
Sbjct: 554 SWDEFKTAYAPQADKPG--LHLIEIKTDRQSRVQLHRDMLNEAVREVKK 600
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase,
membrane-associated flavoprotein dehydrogenase,
interactions with lipids cell membrane; HET: TDP FAD;
2.50A {Escherichia coli} PDB: 3ey9_A*
Length = 549
Score = 129 bits (328), Expect = 3e-32
Identities = 109/600 (18%), Positives = 198/600 (33%), Gaps = 139/600 (23%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARS 87
T+ ++A+ L G K ++ V GD L D L + + +E A +AA A+
Sbjct: 4 TVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQL 63
Query: 88 RG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFT 146
G + C + G L ++N + + ++PV+ I I IG +
Sbjct: 64 SGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAA----------HIPSSEIGS-GYF 112
Query: 147 QE---LRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPG-IPHPTF 202
QE F+ + +V++ +++ A+ A+ + + PG +
Sbjct: 113 QETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVL----PGDVALKPA 168
Query: 203 ARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVL-VGGPNIRVAKAQKAFIELADA 261
+ E + A L + L G A A K +E A
Sbjct: 169 PEGATMHWYHAPQPVVTPEEEELRKLAQLLRYSSNIALMCGS---GCAGAHKELVEFAGK 225
Query: 262 TGYPI--AIMPSGKGLVPEHHPHF------IGTYWGAVSSSFCGEIVESADAYVFVGPIF 313
PI A+ GK V +P+ IG G + +AD V +G F
Sbjct: 226 IKAPIVHALR--GKEHVEYDNPYDVGMTGLIGFSSGF-------HTMMNADTLVLLGTQF 276
Query: 314 NDYSSVGYSLLIKKEKAIIVQ----P------HRVTVGNGPSLGWVFMADFLSALAKKLR 363
Y A I+Q P +V + +G + L AL +
Sbjct: 277 PY--RAFYP-----TDAKIIQIDINPASIGAHSKVDM---ALVGDI--KSTLRALLPLVE 324
Query: 364 KNT------TALENYRR-------IYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAV 410
+ ALE+YR + P + P + + I + D
Sbjct: 325 EKADRKFLDKALEDYRDARKGLDDLAKPSEKAIH-----PQYL---AQQISHFAADDAIF 376
Query: 411 IAETGDSWFNCQKLRLPENCGYEFQM---QY---------------GSIGWSVGATLGYA 452
+ G + +Y GS+ ++ LG A
Sbjct: 377 TCDVGTP-----------------TVWAARYLKMNGKRRLLGSFNHGSMANAMPQALG-A 418
Query: 453 QAAK-DKRVIACIGDGSFQ----EISTMIRCGQRSIIFLINNGGY---TIEVEIHDGPYN 504
QA + +++V+A GDG F + ++++ I + NN +E++ G
Sbjct: 419 QATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMK-AGGYLT 477
Query: 505 ---VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKD 561
+ + ++ + A +V E+ EA++ A D ++V V K+
Sbjct: 478 DGTELHDTNFARIAEACG-----ITGIRVEKASEVDEALQRAF--SIDGPVLVDVVVAKE 530
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship,
oxidation-reduct umpolung, thiamine diphosphate,
reaction intermediate; HET: TDM FAD GOL; 1.09A
{Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A*
2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Length = 603
Score = 125 bits (316), Expect = 1e-30
Identities = 91/599 (15%), Positives = 194/599 (32%), Gaps = 126/599 (21%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHL-IAEPELNLVGCCNELNAGYAADGYAR 86
G + + L G ++ +PG +++D L ++ + +E AA A+
Sbjct: 12 LAGAAVIKVLEAWGVDHLYGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAK 71
Query: 87 SRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDF 145
G +G C + GG ++N + A +++PV+ ++G + + + D
Sbjct: 72 LTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIG----------QFGTTGMNM-DT 120
Query: 146 TQE---LRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTF 202
QE + + N +ID AI A + I +LP P
Sbjct: 121 FQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDLPWQQIPAE 180
Query: 203 ARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVL-VGGPNIRVAKAQKAFIELADA 261
+ + AV L A +P++ G KA K +L+
Sbjct: 181 DWYASANSYQTPLLPE-PDVQAVTRLTQTLLAAERPLIYYGIG---ARKAGKELEQLSKT 236
Query: 262 TGYPIA--IMPSGKGLVPEHHPHF------IGTYWGAVSSSFCGEIVESADAYVFVGPIF 313
P+ KG+V + +P + + E + AD +FVG +
Sbjct: 237 LKIPLMSTYP--AKGIVADRYPAYLGSANRVAQKPAN-------EALAQADVVLFVGNNY 287
Query: 314 NDYSSVGYSLLIKKEKAIIVQ----P------HRVTVGNGPSLGWVFMADFLSALAKKLR 363
++ V + K +Q P H+ + L L+A+ ++
Sbjct: 288 -PFAEVSKAF---KNTRYFLQIDIDPAKLGKRHKTDI---AVLADA--QKTLAAILAQVS 338
Query: 364 KNT------TALENYR--RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETG 415
+ L N + R Y+ Q PL+ + + + + D + G
Sbjct: 339 ERESTPWWQANLANVKNWRAYLASLED---KQEGPLQAYQVLRAVNKIAEPDAIYSIDVG 395
Query: 416 DSWFNCQKLRLPENCGYEFQM---QY---------------GSIGWSVGATLGYAQAAK- 456
D + ++ ++G + + A+
Sbjct: 396 DI-----------------NLNANRHLKLTPSNRHITSNLFATMGVGIPGAIA-AKLNYP 437
Query: 457 DKRVIACIGDGSF----QEISTMIRCGQRSIIFLINNG--GYTIEVE-----IHDGPYN- 504
+++V GDG Q+++T ++ I + N G+ ++ + +
Sbjct: 438 ERQVFNLAGDGGASMTMQDLATQVQYHLPVINVVFTNCQYGF---IKDEQEDTNQNDFIG 494
Query: 505 -VIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 562
+ D++ + + +H +V ++L + + A + I+ + D
Sbjct: 495 VEFNDIDFSKIADGVH-----MQAFRVNKIEQLPDVFEQAKAIAQHEPVLIDAVITGDR 548
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A
{Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 2dji_A* 1v5f_A* 1v5g_A*
Length = 590
Score = 123 bits (312), Expect = 4e-30
Identities = 99/595 (16%), Positives = 187/595 (31%), Gaps = 118/595 (19%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLI-AEPELNLVGCCNELNAGYAADGYAR 86
+G + + L GA ++ +P +L+D + E + + +E AA ++
Sbjct: 5 NIGLAVMKILESWGADTIYGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSK 64
Query: 87 SRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDF 145
G +G V + G ++N + A +N+PV+ I+G + + D
Sbjct: 65 FGGNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILG----------SRPQRELNM-DA 113
Query: 146 TQEL---RCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLPGIPHPTF 202
QEL + I V +L+D A A+ + + + + +
Sbjct: 114 FQELNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKRGVAVLEVPGDFAKVEIDND 173
Query: 203 ARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVL-VGGPNIRVAKAQKAFIELADA 261
L K + ++A + LN + +PV+ G A ELA
Sbjct: 174 QWYSSANSL-RKYAPIAPAAQDIDAAVELLNNSKRPVIYAGIG---TMGHGPAVQELARK 229
Query: 262 TGYPIAIMPSGKGLVPEHHPHF------IGTYWGAVSSSFCGEIVESADAYVFVGPIFND 315
P+ +G E + AD +F G F
Sbjct: 230 IKAPVITTGKNFETFEWDFEALTGSTYRVGWKPA-------NETILEADTVLFAGSNF-P 281
Query: 316 YSSVGYSLLIKKEKAIIVQ----P------HRVTVGNGPSLGWVFMADFLSALAKKLRKN 365
+S V + + +Q P H V LG A + + K+
Sbjct: 282 FSEVEGTF---RNVDNFIQIDIDPAMLGKRHHADV---AILGDA--ALAIDEILNKVDAV 333
Query: 366 T------TALENYR--RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDS 417
L+N R Y+ + L+ ++ I + D + G+S
Sbjct: 334 EESAWWTANLKNIANWREYINMLETKE---EGDLQFYQVYNAINNHADEDAIYSIDVGNS 390
Query: 418 WFNCQKLRLPENCGYEFQM---QY---------------GSIGWSVGATLGYAQAAK-DK 458
++ ++G ++ LG A+ D+
Sbjct: 391 -----------------TQTSIRHLHMTPKNMWRTSPLFATMGIAIPGGLG-AKNTYPDR 432
Query: 459 RVIACIGDGSF----QEISTMIRCGQRSIIFLINNGGY-TIEVE---IHDGPYNV-IKNW 509
+V IGDG+F ++ T +R I + +N Y I+ + + + V +
Sbjct: 433 QVWNIIGDGAFSMTYPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKNLFGVDFTDV 492
Query: 510 DYTGLVNAI-HNGEGKCWTAKVRSEDELTEAMKTATGEQKDS-LCFIEVFVHKDD 562
DY + A G V +++ M A K I+ + +D
Sbjct: 493 DYAKIAEAQGAKG------FTVSRIEDMDRVMAEAVAANKAGHTVVIDCKITQDR 541
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate
synthase; menaquinone biosynthesis, sephchc synthase,
structural genomics; 2.60A {Listeria monocytogenes}
Length = 578
Score = 122 bits (307), Expect = 2e-29
Identities = 90/591 (15%), Positives = 188/591 (31%), Gaps = 72/591 (12%)
Query: 31 RHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG- 89
LV+ G K+ PG + L + P L + +E +AG+ A G A++
Sbjct: 15 AAFIEELVQAGVKEAIISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAKASKR 74
Query: 90 VGACVVTFTVGGLSVLN---AIAGAYSENLPVICIVG--GPNSNDYGTNRILHHTI---G 141
+ T G + N A+A A +P+I + + G +
Sbjct: 75 PVVLLCT---SGTAAANYFPAVAEANLSQIPLIVLTADRPHELRNVGAP----QAMDQLH 127
Query: 142 LPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK-PVYISISCNLPGIP-- 198
L + ++ F + + L A A+ A+K + PV+++ P +P
Sbjct: 128 L--YGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPLREPLVPIL 185
Query: 199 --HPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFI 256
P A + ++++ +++++ K V V GP + + ++ +
Sbjct: 186 EPSPFTATGKKHHHVHIYYTHEVLDDSSIQKMVTECTGK-KGVFVVGPIDK-KELEQPMV 243
Query: 257 ELADATGYPIAIMP-SGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPIFND 315
+LA G+PI P SG I Y A + + + G +
Sbjct: 244 DLAKKLGWPILADPLSGLRSYGALDEVVIDQY-DAFLKEAEIIDKLTPEVVIRFGSMPVS 302
Query: 316 YSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMAD---FLSALAKKL---RKNTTAL 369
+ + + +V P ++ + D L + + + K+ L
Sbjct: 303 KPLKNWLEQLSDIRFYVVDPGAAWKDPIKAVTDMIHCDERFLLDIMQQNMPDDAKDAAWL 362
Query: 370 ENYRRIY--VPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDS----WFNCQK 423
+ + + A L + ++ +L + G+S +
Sbjct: 363 NGWTSYNKVAREIVLAEMANTTILEEGKIVAELRRLLPDKAGLF--IGNSMPIRDVD--T 418
Query: 424 LRLPENCGYEFQMQYGS-----IGWSVGATLGYAQAAKDKRVIACIGDGSF----QEIST 474
+ + + I V + LG + + + IGD SF +
Sbjct: 419 YFSQIDKKIKM---LANRGANGIDGVVSSALGASVV--FQPMFLLIGDLSFYHDMNGLLM 473
Query: 475 MIRCGQRSIIFLINNGGYTI----EVEIHDGPYNVI----KNWDYTGLVNAIHNGEGKCW 526
+ I ++NN G I + + D+ ++ +
Sbjct: 474 AKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESLFGTSTELDFRFAAAF-YDADY--- 529
Query: 527 TAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSAA 577
+ +S DEL EA+ A+ + + IEV ++ +
Sbjct: 530 -HEAKSVDELEEAIDKASYHKGLDI--IEVKTNRHENKANHQALEGHHHHH 577
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami
diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia
coli} PDB: 2q27_A* 2q29_A*
Length = 564
Score = 111 bits (280), Expect = 5e-26
Identities = 107/604 (17%), Positives = 183/604 (30%), Gaps = 137/604 (22%)
Query: 33 LARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VG 91
+ L + ++ V G + H AE + +G +E +AGYAA G
Sbjct: 14 IVEALKQNNIDTIYGVVGIPVTDMARHAQAE-GIRYIGFRHEQSAGYAAAASGFLTQKPG 72
Query: 92 ACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP--DFTQEL 149
C+ G L+ L A+A A P+I I G + + L D+ +EL
Sbjct: 73 ICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDR----------AIVDLQQGDY-EEL 121
Query: 150 RCFQAIT--CSQA--VVNNLGDAHELIDTAISTALKESK---PVYISISCNLPGIPHP-- 200
++A VN D + AI + S VY+ + P
Sbjct: 122 DQM-NAAKPYAKAAFRVNQPQDLGIALARAIRVS--VSGRPGGVYLDL---------PAN 169
Query: 201 -TFARDPVPFFLAPKVS------NQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQK 253
A L V L +V + L KA +P+++ G ++A +
Sbjct: 170 VLAATMEKDEALTTIVKVENPSPALLPCPKSVTSAISLLAKAERPLIILGKGAAYSQADE 229
Query: 254 AFIELADATGYPIAIMPSGKGLVPEHHP-HFIGTYWGAVSSSFCGEIVESADAYVFVGPI 312
E ++ P M KG++ + HP + + +AD + VG
Sbjct: 230 QLREFIESAQIPFLPMSMAKGILEDTHPLS--AAAA-RSFA------LANADVVMLVGAR 280
Query: 313 FNDYSSVGYSLLIKKEKAI-----------IVQPHRVTVGNGPSLGWVFMADFLSALAKK 361
N + G + I VG+ + M L+ L +
Sbjct: 281 LNWLLAHGKKGWAADTQFIQLDIEPQEIDSNRPIAVPVVGD---IASS-MQGMLAELKQN 336
Query: 362 LRKNTTA----LENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDS 417
L +++ +PL ++D+L + + +
Sbjct: 337 TFTTPLVWRDILNIHKQQNAQKMHEKLSTDTQPLNYFNALSAVRDVLRENQDIYL-VNEG 395
Query: 418 ----WFNCQKLRLPENCGYEFQ-------------MQYGSIGWSVGATLGYAQAAKDKRV 460
+ + + M G +G +G A V
Sbjct: 396 ANTLDN-ARNI-------IDMYKPRRRLDCGTWGVMGIG-----MGYAIG-ASVTSGSPV 441
Query: 461 IACIGDGSF----QEISTMIRCGQRSIIFLINNGG--------------YTIEVEIHDGP 502
+A GD +F EI T+ R I + NNGG + ++
Sbjct: 442 VAIEGDSAFGFSGMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGAPS-PTDLLHHA 500
Query: 503 YNVIKNWDYTGLVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 562
Y L++A G G V + DEL A+ T Q I V +
Sbjct: 501 -------RYDKLMDA-FRGVG----YNVTTTDELRHALTTGI--QSRKPTIINVVIDPAA 546
Query: 563 TSKE 566
++
Sbjct: 547 GTES 550
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate
synthase; menaquinone, THDP, Mg, vitamin K2,
carboxylase, magnesium; HET: AKG; 1.95A {Escherichia
coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Length = 556
Score = 102 bits (255), Expect = 5e-23
Identities = 93/599 (15%), Positives = 170/599 (28%), Gaps = 102/599 (17%)
Query: 28 TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARS 87
+ L G + + PG + L +E G+ A G A+
Sbjct: 9 RWAAVILEALTRHGVRHICIAPGSRSTLLTLAAAENSAFIHHTHFDERGLGHLALGLAKV 68
Query: 88 RG-VGACVVTFTVGGLSVLN---AIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLP 143
A +VT G +V N A+ A +I + +R I
Sbjct: 69 SKQPVAVIVT---SGTAVANLYPALIEAGLTGEKLILLTA---------DR-PPELIDCG 115
Query: 144 DFTQELR---CFQAITCSQAVVNNLGDAHELID-----TAISTALKESKPVYISISCNLP 195
Q +R F + +L + I + I AL + I+C
Sbjct: 116 AN-QAIRQPGMFASHPTHSI---SLPRPTQDIPARWLVSTIDHALGTLHAGGVHINCPFA 171
Query: 196 GIPHPTFARDPVP-------FFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRV 248
+ + ++ K + E D+ K +V +
Sbjct: 172 EPLYGEMDDTGLSWQQRLGDWWQDDKPWLREAPRLESEKQRDWFFWRQKRGVVVAGRMS- 230
Query: 249 AKAQKAFIELADATGYPI-AIMPSGKGLVPEHHPHFIGTYWGAVSSSFCGEIVESADAYV 307
A+ K A G+P+ + S G ++G A S +IV V
Sbjct: 231 AEEGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLGNA-KATSELQQAQIV------V 283
Query: 308 FVGPIFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMAD---FLSALAKKLRK 364
+G + + + E+ IV + G +A+ +L + R+
Sbjct: 284 QLGSSLTGKRLLQWQASCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWLELHPAEKRQ 343
Query: 365 N-----TTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDS-- 417
E + + AQ L I D L +
Sbjct: 344 PWCVEIPRLAEQAMQAVIARRDAFGEAQ--------LAHRICDYLPEQGQLFVGNSLVVR 395
Query: 418 -WFNCQKLRLPENCGYEFQMQYGS-----IGWSVGATLGYAQAAKDKRVIACIGDGSF-- 469
+L Y + I + G Q A K +A +GD S
Sbjct: 396 LIDALSQLPAGYPV-------YSNRGASGIDGLLSTAAG-VQRASGKPTLAIVGDLSALY 447
Query: 470 --QEISTMIRCGQRSIIFLINNGGYTI----EVEIHDG------PYNVIKNWDYTGLVNA 517
++ + + ++ ++NN G I + P NV +
Sbjct: 448 DLNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLMPQNV----HFEHAAAM 503
Query: 518 IHNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELLEWGSRVSA 576
+ + ++ EL A A + + IE+ V+ D ++ L + ++VS
Sbjct: 504 -FELKY----HRPQNWQELETAFADAW--RTPTTTVIEMVVNDTDGAQTLQQLLAQVSH 555
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon,
mandelate catabolism, T thiazolone diphosphate,
inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas
putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A*
1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A*
2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Length = 528
Score = 98.7 bits (247), Expect = 6e-22
Identities = 93/514 (18%), Positives = 158/514 (30%), Gaps = 121/514 (23%)
Query: 33 LARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VG 91
L G VF PG L L + L E ADGYA++
Sbjct: 8 TYELLRRQGIDTVFGNPGSNALPFLKDFPEDFRYILA--LQEACVVGIADGYAQASRKPA 65
Query: 92 ACVVTF------TVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDF 145
+ +G ++ A++ + P+I G IG+
Sbjct: 66 FINLHSAAGTGNAMGA------LSNAWNSHSPLIVTAGQQTR----------AMIGVEAL 109
Query: 146 TQELRCFQAITCSQAVV--NNL-GDAHELIDTAISTALKESK-----PVYISI-----SC 192
+ A + +V + A E+ +S A+ + PVY+S+
Sbjct: 110 LTNV---DAANLPRPLVKWSYEPASAAEVPHA-MSRAIHMASMAPQGPVYLSVPYDDWDK 165
Query: 193 NLPGIPHPTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQ 252
+ H F R + + ++ LN A P +V GP++ A A
Sbjct: 166 DADPQSHHLFDRHVSS--------SVRLNDQDLDILVKALNSASNPAIVLGPDVDAANAN 217
Query: 253 KAFIELADATGYPIAIMPS-GKGLVPEHHPHFIG-----TYWGAVSSSFCGEIVESADAY 306
+ LA+ P+ + PS + P HP F G +E D
Sbjct: 218 ADCVMLAERLKAPVWVAPSAPRCPFPTRHPCFRGLMPAGIAA-ISQL------LEGHDVV 270
Query: 307 VFVGPIFNDYS-SVGYSLLIKKEKAI-----------IVQPHRVTVGNGPSLGWVFMADF 354
+ +G Y L + I + V + +
Sbjct: 271 LVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAARAPMGDAI-VAD--------IGAM 321
Query: 355 LSALAKKLRKNTTALENYRRI---YVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVI 411
SALA + +++ L + P V F + DM + +
Sbjct: 322 ASALANLVEESSRQLPTAAPEPAKVDQDAGRLH-----PETV---FDTLNDMAPENAIYL 373
Query: 412 AETGDSW---FNCQKLRLPENCGYEFQMQYGSIGWSVGATLGY-------AQAAK-DKRV 460
E+ + + +R P GS + LG+ Q A+ +++V
Sbjct: 374 NESTSTTAQMWQRLNMRNP-----------GSYYFCAAGGLGFALPAAIGVQLAEPERQV 422
Query: 461 IACIGDGSF----QEISTMIRCGQRSIIFLINNG 490
IA IGDGS + T + +I ++NNG
Sbjct: 423 IAVIGDGSANYSISALWTAAQYNIPTIFVIMNNG 456
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase,
thiamin diphosphate, lyase; HET: PGE HE3; 2.00A
{Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
PDB: 1ozg_A* 1ozf_A*
Length = 566
Score = 94.1 bits (235), Expect = 2e-20
Identities = 86/526 (16%), Positives = 172/526 (32%), Gaps = 131/526 (24%)
Query: 33 LARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VG 91
+ +L G + VF +PG + D L+ + + ++ +E NA + A R G G
Sbjct: 17 VVSQLEAQGVRQVFGIPGAKIDKVFDSLL-DSSIRIIPVRHEANAAFMAAAVGRITGKAG 75
Query: 92 ACVVT----FTVGGLSVLNA---IAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPD 144
+VT + N +A A SE PV+ + G D
Sbjct: 76 VALVTSGPGCS-------NLITGMATANSEGDPVVALGGAVKRADKAK-----------Q 117
Query: 145 FTQE---LRCFQAITCSQAVVNNLGDAHELIDTAISTALKESK-PVYISISCNLPGIPHP 200
Q + F +T V E++ A A + ++S+ + +
Sbjct: 118 VHQSMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQD---VVDG 174
Query: 201 TFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVL-VGGPNIRVAKAQKAFIELA 259
+ +P AP++ + A++ A + +A P+ +G + + KA L
Sbjct: 175 PVSGKVLPASGAPQMGA--APDDAIDQVAKLIAQAKNPIFLLGLMASQ-PENSKALRRLL 231
Query: 260 DATGYPIA--IMPSGKGLVPE-HHPHFIG------TYWGAVSSSFCGEIVESADAYVFVG 310
+ + P+ G V + + F G G ++ AD + +G
Sbjct: 232 ETSHIPVTSTYQ--AAGAVNQDNFSRFAGRVGLFNNQAGDRL-------LQLADLVICIG 282
Query: 311 PIFNDYSSVGYSLLIKKEKAI-----------IVQPHRVTVGNGPSLGWVFMADFLSALA 359
+Y + P VG+ +A L+ LA
Sbjct: 283 YSPVEY--EPAMWNSGNATLVHIDVLPAYEERNYTPDVELVGD--------IAGTLNKLA 332
Query: 360 KKLRKNTTA----------LENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTA 409
+ + ++ R + G + + PLR+ + +QD+++ D
Sbjct: 333 QNIDHRLVLSPQAAEILRDRQHQRELLDRRGAQLNQFALHPLRI---VRAMQDIVNSDVT 389
Query: 410 VIAETGDSWFNCQKLRLPENCGYEFQM---QY---------------GSIGWSVGATLGY 451
+ + G F + +Y ++G ++ +G
Sbjct: 390 LTVDMG-----------------SFHIWIARYLYTFRARQVMISNGQQTMGVALPWAIG- 431
Query: 452 AQAAK-DKRVIACIGDGSF----QEISTMIRCGQRSIIFLINNGGY 492
A +++V++ GDG F E+ T +R + + + GY
Sbjct: 432 AWLVNPERKVVSVSGDGGFLQSSMELETAVRLKANVLHLIWVDNGY 477
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate,
flavoprotein, lyase, thiamine pyrophosphate; HET: TZD
ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3
c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A*
2jib_A*
Length = 568
Score = 81.0 bits (201), Expect = 3e-16
Identities = 68/398 (17%), Positives = 120/398 (30%), Gaps = 97/398 (24%)
Query: 218 QLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAIMPSGKGLVP 277
Q+ E A+ AD + A +PV++ G A+ L + TG P M KGL+P
Sbjct: 196 QIPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGMAKGLLP 255
Query: 278 EHHP-HFIGTYWG--AVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKA-II- 332
++HP A++ D V +G N G E +
Sbjct: 256 DNHPQS--AAATRAFALAQ---------CDVCVLIGARLNWLMQHGKGKTWGDELKKYVQ 304
Query: 333 -----------VQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTAL-------ENYRR 374
VG+ + ++ AL + + + +
Sbjct: 305 IDIQANEMDSNQPIAAPVVGD---IKSA-VSLLRKALKGAPKADAEWTGALKAKVDGNKA 360
Query: 375 IYVPPGIPVKRAQNEPLRVNVLFKHIQDML--SGDTAVIAETGDSWFNCQKLRLPENCGY 432
+ + + ++D + + D +++ E
Sbjct: 361 KLAGK--MTAETPSGMMNYSNSLGVVRDFMLANPDISLVNEGA------NA--------- 403
Query: 433 EFQM---QY---------------GSIGWSVGATLGYAQAAKDKRVIACIGDGSF----Q 470
G +G +G + A A K VIA GD +F
Sbjct: 404 --LDNTRMIVDMLKPRKRLDSGTWGVMGIGMGYCVA-AAAVTGKPVIAVEGDSAFGFSGM 460
Query: 471 EISTMIRCGQRSIIFLINNGGYTI----EVEIHDGPYN--VIKNWDYTGLVNAIHNGEGK 524
E+ T+ R + ++NNGG I E + G + + Y ++ A G+G
Sbjct: 461 ELETICRYNLPVTVIIMNNGG--IYKGNEADPQPGVISCTRLTRGRYDMMMEA-FGGKGY 517
Query: 525 CWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDD 562
+ EL A++ A C I + D
Sbjct: 518 ----VANTPAELKAALEEAV--ASGKPCLINAMIDPDA 549
Score = 54.4 bits (132), Expect = 7e-08
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 2/92 (2%)
Query: 33 LARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VG 91
L L ++ V G L + +E +AGYAA G G
Sbjct: 16 LIDALKMNDIDTMYGVVGIPITNLARMWQDD-GQRFYSFRHEQHAGYAASIAGYIEGKPG 74
Query: 92 ACVVTFTVGGLSVLNAIAGAYSENLPVICIVG 123
C+ G L+ + ++A A + P+I + G
Sbjct: 75 VCLTVSAPGFLNGVTSLAHATTNCFPMILLSG 106
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate,
benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas
fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A*
3iaf_A* 3d7k_A*
Length = 563
Score = 69.9 bits (172), Expect = 9e-13
Identities = 67/412 (16%), Positives = 109/412 (26%), Gaps = 113/412 (27%)
Query: 220 GLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIA--IMPSGKGLVP 277
A ++ L KA +PV+V G + A ATG P+ G ++
Sbjct: 189 PDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVFADYE--GLSMLS 246
Query: 278 EHHPHFI-----GTYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAII 332
Y A + + D + +G F + G LI +I
Sbjct: 247 GLPDAMRGGLVQNLYSFAKA-------DAAPDLVLMLGARFGLNTGHGSGQLIPHSAQVI 299
Query: 333 ------------VQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTA-----LENYRRI 375
V + +G + A A+ + + +
Sbjct: 300 QVDPDACELGRLQGIALGIVAD---VGGT-IEALAQATAQDAAWPDRGDWCAKVTDLAQE 355
Query: 376 YVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQ 435
I K + L + I + V+A+
Sbjct: 356 R-YASIAAKSSSEHALHPFHASQVIAKHVDAGVTVVADGA------LT-----------Y 397
Query: 436 M---QY---------------GSIGWSVGATLGYAQAAK---DKRVIACIGDGSF----Q 470
+ + GS+G G LG AQ A +R I GDGS
Sbjct: 398 LWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALG-AQVADLEAGRRTILVTGDGSVGYSIG 456
Query: 471 EISTMIRCGQRSIIFLINNG---------------GYTIEVEIHDGPYNVIKNWDYTGLV 515
E T++R I+ ++NN + Y G+
Sbjct: 457 EFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVGPNRV-TGTRLENG-------SYHGVA 508
Query: 516 NAI-HNGEGKCWTAKVRSEDELTEAMKTATGEQKDSLCFIEVFVHKDDTSKE 566
A +G V S + + A+ A + I V V D E
Sbjct: 509 AAFGADGY------HVDSVESFSAALAQAL--AHNRPACINVAVALDPIPPE 552
Score = 46.4 bits (111), Expect = 2e-05
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 16/99 (16%)
Query: 33 LARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VG 91
+ R L++ G + +F + G T+ + + ++ +E AG+AA+GYAR+ +G
Sbjct: 10 VVRTLIKAGVEHLFGLHGAHIDTIFQACLDHD-VPIIDTRHEAAAGHAAEGYARAGAKLG 68
Query: 92 ACVVT----FTVGGLSVLNA---IAGAYSENLPVICIVG 123
+VT FT NA IA A+ + PV+ + G
Sbjct: 69 VALVTAGGGFT-------NAVTPIANAWLDRTPVLFLTG 100
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP),
thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE;
2.70A {Escherichia coli}
Length = 616
Score = 65.3 bits (160), Expect = 3e-11
Identities = 57/307 (18%), Positives = 103/307 (33%), Gaps = 66/307 (21%)
Query: 225 VEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIA--IMPSGKGLVPEHHPH 282
+E + L +A +PV+V G + A A + A+ T P+ +M G G +P+ H
Sbjct: 216 IEKAVEMLIQAERPVIVAGGGVINADAAALLQQFAELTSVPVIPTLM--GWGCIPDDHEL 273
Query: 283 FIG------TYWGAVSSSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAI----- 331
G + ++ + ++D +G F + + + K +
Sbjct: 274 MAGMVGLQTAHRYGNAT------LLASDMVFGIGNRFANRHTGSVEKYTEGRKIVHIDIE 327
Query: 332 ------IVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTAL------------ENYR 373
++ P V + + + + +
Sbjct: 328 PTQIGRVLCPDLGIVSD---AKAA-LTLLVEVAQEMQKAGRLPCRKEWVADCQQRKRTLL 383
Query: 374 RIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDS--W----FNCQKLRLP 427
R +PVK P RV ++ + D + G S + K R
Sbjct: 384 RKTHFDNVPVK-----PQRV---YEEMNKAFGRDVCYVTTIGLSQIAAAQMLHVFKDRHW 435
Query: 428 ENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSF----QEISTMIRCGQRSI 483
NCG Q G +GW++ A LG A + V+A GD F +E++ + I
Sbjct: 436 INCG-----QAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQFLIEELAVGAQFNIPYI 490
Query: 484 IFLINNG 490
L+NN
Sbjct: 491 HVLVNNA 497
Score = 49.1 bits (118), Expect = 3e-06
Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 2/125 (1%)
Query: 1 MDTANAMGSTGQPGSAPAPVRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHL 60
M +++ + L + G F VPG +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMAKMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAM 60
Query: 61 IAEPELNLVGCCNELNAGYAADGYARSRG--VGACVVTFTVGGLSVLNAIAGAYSENLPV 118
+ + + A + A+GY R+ +G C+ T G ++ A+ A ++++P+
Sbjct: 61 RKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPI 120
Query: 119 ICIVG 123
+CI G
Sbjct: 121 LCITG 125
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.4 bits (135), Expect = 2e-08
Identities = 51/357 (14%), Positives = 92/357 (25%), Gaps = 118/357 (33%)
Query: 279 HHPHFIGTYWGAVSSSFCGEIVESADAYVFVGPI-----FNDYSSVGYSLLIKKE-KAII 332
HH H + G +I+ VF D + S+L K+E II
Sbjct: 2 HHHHHMDFETGEHQYQ-YKDILS-----VFEDAFVDNFDCKDVQDMPKSILSKEEIDHII 55
Query: 333 VQPHRVT---------VGNGPSLGWVFMADFLSA----LAKKLRK-------NTTALENY 372
+ V+ + + F+ + L L ++ T
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 373 R-RIY--VPPGIP--VKRAQNEPLRVNVLFKHIQDMLSGDTAVIAETGDSWFNCQKLRLP 427
R R+Y V R Q + ++ L +LR P
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQ--------PYLKLRQAL-----------------LELR-P 149
Query: 428 EN----CGYEFQMQYGSIGWSVGATLGYAQAAKDKRVIACIGDGSFQEISTMIRCGQ-RS 482
G + G + A +V + F + + C +
Sbjct: 150 AKNVLIDG----V--LGSGKTWVA----LDVCLSYKVQCKMDFKIFW-L-NLKNCNSPET 197
Query: 483 IIFLINN--------------GGYTIEVEIHDG-----------PYN----VIKN-WDYT 512
++ ++ I++ IH PY V+ N +
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-A 256
Query: 513 GLVNAIHNGEGKCWTAKVRSED-ELTEAMKTATGEQKDSLCFIEVFVHKDDTSKELL 568
NA C + + ++T+ + AT + K LL
Sbjct: 257 KAWNAF---NLSCKIL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE--VKSLL 307
Score = 49.1 bits (116), Expect = 3e-06
Identities = 64/409 (15%), Positives = 126/409 (30%), Gaps = 107/409 (26%)
Query: 51 DFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARS----RGV----------GACVVT 96
D N T + +L + EL + Y V +C +
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 97 FTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAIT 156
T V + ++ A + ++ + ++ +L + Q+L + +T
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE--VKSLLLKYLDCR--PQDLP-REVLT 324
Query: 157 CSQAVVNNLG----DAHELID-----------TAISTALK-----ESKPVYISISCNLPG 196
+ ++ + D D T I ++L E + ++ +S
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS----- 379
Query: 197 IPHPTFARD-PVPFFLAPKVSNQLGLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAF 255
+ F +P + + + + +NK K LV K K
Sbjct: 380 V----FPPSAHIP----TILLSLIWFDVIKSDVMVVVNKLHKYSLV-------EKQPKES 424
Query: 256 -IELADATGYPIAIMPSGKGL-VPEHHPHFIGTYWGAVSSSFCGE--IVESADAYVFVGP 311
I + I + K H + Y + +F + I D Y
Sbjct: 425 TISI-----PSIYLELKVKLENEYALHRSIVDHY--NIPKTFDSDDLIPPYLDQYF---- 473
Query: 312 IFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLRKNTTA--- 368
YS +G+ L I P R+T+ VF+ DF L +K+R ++TA
Sbjct: 474 ----YSHIGHHL------KNIEHPERMTL-----FRMVFL-DF-RFLEQKIRHDSTAWNA 516
Query: 369 ----------LENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDMLSGD 407
L+ Y+ Y+ P + ++ L K ++++
Sbjct: 517 SGSILNTLQQLKFYKP-YICDNDPKYERLVNAI-LDFLPKIEENLICSK 563
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 50.3 bits (121), Expect = 1e-06
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 220 GLEAAVEATADFLNKAVKPVL-VGGPNIRVAKAQKAFIELADATGYPIA--IMPSGKGLV 276
+ ++ AD +N A KPVL VG + A + EL+D P+ + G G
Sbjct: 274 FVMQSINKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQ--GLGSF 331
Query: 277 PEHHPHFIG 285
+ P +
Sbjct: 332 DQEDPKSLD 340
Score = 50.3 bits (121), Expect = 1e-06
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Query: 3 TANAMGSTGQPGSAPAPVRGGASVG-TLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLI 61
A S P + VG T G+ + VF PG L + D +
Sbjct: 57 EQPAEPSKLAKKLRAEPDMDTSFVGLTGGQIFNEMMSRQNVDTVFGYPGGAILPVYDAIH 116
Query: 62 AEPELNLVGCCNELNAGYAADGYARSRG-VGACVVTFTVGGLSVLNAIAGAYSENLPVIC 120
+ N V +E AG+ A+GYAR+ G G +VT G +V+ +A A+++ +P++
Sbjct: 117 NSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPMADAFADGIPMVV 176
Query: 121 IVG 123
G
Sbjct: 177 FTG 179
Score = 41.9 bits (99), Expect = 6e-04
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 439 GSIGWSVGATLGYAQAAK-DKRVIACIGDGSF----QEISTMIRCGQRSIIFLINNG 490
G++G+ + A +G AQ AK + VI GD SF E+S+ ++ G I ++NN
Sbjct: 513 GTMGYGLPAAIG-AQVAKPESLVIDIDGDASFNMTLTELSSAVQAGTPVKILILNNE 568
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex,
transferase; HET: MSE TPP; 2.00A {Streptomyces
clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB:
1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Length = 573
Score = 49.5 bits (119), Expect = 2e-06
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 220 GLEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIA--IMPSGKGLVP 277
G + A + A L +A PVLV G + A A LA+ P+ + KG++P
Sbjct: 201 GWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYI--AKGVLP 258
Query: 278 EHHPHFIGTYWGA 290
H G G
Sbjct: 259 VGHELNYGAVTGY 271
Score = 47.2 bits (113), Expect = 1e-05
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 33 LARRLVEIGAKDVFSVPGDFNLTLL-DHLIAEPELNLVGCCNELNAGYAADGYARSRG-V 90
L RL + G VF V G ++L D + ++ V +E AG AAD AR G
Sbjct: 18 LLSRLRDHGVGKVFGVVGREAASILFDEV---EGIDFVLTRHEFTAGVAADVLARITGRP 74
Query: 91 GACVVTFTVGGLSVLNAIAGAYSENLPVICIVG 123
AC T G ++ IA + + PVI +
Sbjct: 75 QACWATLGPGMTNLSTGIATSVLDRSPVIALAA 107
Score = 46.8 bits (112), Expect = 2e-05
Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 38/144 (26%)
Query: 439 GSIGWSVGATLGYAQAAK-DKRVIACIGDGSF----QEISTMIRCGQRSIIFLINNG--G 491
S G+ + A +G AQ A+ D+ GDG F ++ T+ R + ++NN G
Sbjct: 436 SSFGYGIPAAIG-AQMARPDQPTFLIAGDGGFHSNSSDLETIARLNLPIVTVVVNNDTNG 494
Query: 492 -------------YTIEVEIHDGPYNVIKNWDYTGLVNAI-HNGEGKCWTAKVRSEDELT 537
+ G D+ L A + + + +EL
Sbjct: 495 LIELYQNIGHHRSHD-PAVKFGGV-------DFVALAEANGVDAT------RATNREELL 540
Query: 538 EAMKTATGEQKDSLCFIEVFVHKD 561
A++ + IEV V+ D
Sbjct: 541 AALRKGA--ELGRPFLIEVPVNYD 562
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis
thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A*
1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Length = 590
Score = 49.4 bits (119), Expect = 3e-06
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 33 LARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLVGCCNELNAGYAADGYARSRG-VG 91
L L G + VF+ PG ++ + L + V +E +AA+GYARS G G
Sbjct: 18 LVEALERQGVETVFAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSSGKPG 77
Query: 92 ACVVTFTVGGLSVLNAIAGAYSENLPVICIVG 123
C+ T G ++++ +A A +++P++ I G
Sbjct: 78 ICIATSGPGATNLVSGLADALLDSVPLVAITG 109
Score = 46.4 bits (111), Expect = 2e-05
Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 31/145 (21%)
Query: 439 GSIGWSVGATLGYAQAAK-DKRVIACIGDGSF----QEISTMIRCGQRSIIFLINNG--G 491
G++G+ + A +G A A D V+ GDGSF QE++T+ + L+NN G
Sbjct: 426 GAMGFGLPAAIG-ASVANPDAIVVDIDGDGSFIMNVQELATIRVENLPVKVLLLNNQHLG 484
Query: 492 -------------YTIEVEIHDGPYNVIKNWDYTGLVNAI-HNGEGKCWTAKVRSEDELT 537
+ D + A A+V + +L
Sbjct: 485 MVMQWEDRFYKANRA-HTFLGDPAQEDEIFPNMLLFAAACGIPA------ARVTKKADLR 537
Query: 538 EAMKTATGEQKDSLCFIEVFVHKDD 562
EA++T ++V +
Sbjct: 538 EAIQTML--DTPGPYLLDVICPHQE 560
Score = 44.4 bits (106), Expect = 8e-05
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 222 EAAVEATADFLNKAVKPVL-VGGPNIRVAKAQKAFIELADATGYPIA--IMPSGKGLVPE 278
++ +E ++++ KPVL VGG + + TG P+A +M G G P
Sbjct: 201 DSHLEQIVRLISESKKPVLYVGGG---CLNSSDELGRFVELTGIPVASTLM--GLGSYPA 255
Query: 279 HHPHFIG 285
+
Sbjct: 256 DDELSLH 262
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains;
HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Length = 589
Score = 49.1 bits (118), Expect = 3e-06
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 2/93 (2%)
Query: 33 LARRLVEIGAKDVFSVPGDFNLTLLDHLI-AEPELNLVGCCNELNAGYAADGYARSRG-V 90
+ L E G + V G + + D + ++ EL + +GY +
Sbjct: 10 IVEALEEYGTEQVVGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNGYNYVKDRS 69
Query: 91 GACVVTFTVGGLSVLNAIAGAYSENLPVICIVG 123
A VG L + A+ A + +P + I
Sbjct: 70 AAVGAWHCVGNLLLHAAMQEARTGRIPAVHIGL 102
Score = 47.1 bits (113), Expect = 1e-05
Identities = 30/138 (21%), Positives = 44/138 (31%), Gaps = 26/138 (18%)
Query: 439 GSIGWSVGATLGYAQAAK-DKRVIACIGDGSF----QEISTMIRCGQRSIIFLINNGGY- 492
G +G LG AQ A+ + RV GDG+ E + I + N Y
Sbjct: 424 GILGCGFPMALG-AQLAEPNSRVFLGTGDGALYYHFNEFRVAVEHKLPVITMVFTNESYG 482
Query: 493 ------TIEVEIHDGPY-NVIKNWDYTGLVNAI-HNGEGKCWTAKVRSEDELTEAMKTAT 544
+ N D+ G+ A GE VR ++ A++ A
Sbjct: 483 ANWTLMNHQ---FGQNNWTEFMNPDWVGIAKAFGAYGE------SVRETGDIAGALQRAI 533
Query: 545 GEQKDSLCFIEVFVHKDD 562
IE+ V K
Sbjct: 534 --DSGKPALIEIPVSKTQ 549
Score = 45.6 bits (109), Expect = 3e-05
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 220 GLEAAVEATADFLNKAVKPVL-VGGPNIRVAKAQKAFIELADATGYPIA--IMPSGKGLV 276
V A L A PV+ GG R + +A ++LA+ G P+ G G+
Sbjct: 190 APNEDVREAAAQLVAAKNPVILAGGGVAR-SGGSEALLKLAEMVGVPVVTTST--GAGVF 246
Query: 277 PEHHPHFIG 285
PE H +G
Sbjct: 247 PETHALAMG 255
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 5e-05
Identities = 79/501 (15%), Positives = 147/501 (29%), Gaps = 158/501 (31%)
Query: 175 AISTALKESKPVYI---SISCNLPGIPHPTFA-----RDPVPFFLA--PKVSNQLGLE-- 222
A ST +P+ + S+ L +P +F ++ F P+ + +
Sbjct: 3 AYST-----RPLTLSHGSLEHVLL-VPTASFFIASQLQE---QFNKILPEPTEGFAADDE 53
Query: 223 --AAVEATADFL---NKAVKPVLVGGPNIRVAKA-----QKAFIELADATGYPI----AI 268
E FL + V+P G +V + ++E D I A
Sbjct: 54 PTTPAELVGKFLGYVSSLVEP-SKVGQFDQVLNLCLTEFENCYLEGND-----IHALAAK 107
Query: 269 MPSGKGLVPEHHPHFIGTYWGAV----------SSSFCGEIVESADAYVFV-----GP-- 311
+ I Y A S+S V +A + G
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTD 167
Query: 312 --------IFNDYSSVGYSLLIKKEKAIIVQPHRVTVGNGPSLGWVFMADFLSALAKKLR 363
++ Y + LIK + + R T+ + L L
Sbjct: 168 DYFEELRDLYQTYHVL-VGDLIKFSAETLSELIRTTLDAEKVFTQGL--NILEWLENP-- 222
Query: 364 KNTTALENYRRIYVP---PGIPV----------KRAQNEPLRVNVLFK----HIQDMLSG 406
+ T ++Y + +P P I V K P + K H Q +++
Sbjct: 223 -SNTPDKDYL-LSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 407 DTAVIAETGDSW--F--NCQK-LRLPENCGYEFQMQYGSIGWSVGATLGYAQAAKDKRVI 461
IA DSW F + +K + + G Y + S+ ++ + + +
Sbjct: 281 --VAIA-ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT--SLPPSI--LEDSLE---- 329
Query: 462 ACIGDGSFQEISTMIRC-GQR-----SIIFLINN---GGYTIEVEIHDGPYN-VIKNWDY 511
+G S M+ + N+ G +E+ + +G N V+
Sbjct: 330 --NNEG---VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV----- 379
Query: 512 TG-------LVNAIHNGEGKCWTAKVRSEDELTEAMKTATGEQKD--SLCFIEVFV--H- 559
+G L + K ++ L ++ + E+K S F+ V H
Sbjct: 380 SGPPQSLYGLNLTLR---------KAKAPSGLDQS-RIPFSERKLKFSNRFLPVASPFHS 429
Query: 560 ----------KDDTSKELLEW 570
D K + +
Sbjct: 430 HLLVPASDLINKDLVKNNVSF 450
Score = 37.3 bits (86), Expect = 0.014
Identities = 30/164 (18%), Positives = 47/164 (28%), Gaps = 59/164 (35%)
Query: 298 EIVESADAYVFVGP-------------IFNDYSSVGYSLL-IKKEKAIIVQP-----HRV 338
EI E + +Y F + + + K K +I H
Sbjct: 1709 EINEHSTSYTFRSEKGLLSATQFTQPALT----LMEKAAFEDLKSKGLIPADATFAGH-- 1762
Query: 339 TVGNGPSLG----WVFMADFLS--ALAK--KLR---------KNTTALENYRRIYVPPGI 381
SLG +AD +S +L + R ++ NY I + PG
Sbjct: 1763 ------SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGR 1816
Query: 382 PVKRAQNEPLR--VNVLFKHIQDMLS-------GDTAVIAETGD 416
E L+ V + K ++ V A GD
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA--GD 1858
Score = 35.0 bits (80), Expect = 0.083
Identities = 58/360 (16%), Positives = 102/360 (28%), Gaps = 127/360 (35%)
Query: 78 GYAADGYARS---RGV--GACVVTFTVGGLSVLNAIAGAYSENLPVICIV--GGPNSNDY 130
G D Y S + V A G S+L+ + N PV + GG
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIV-----INNPVNLTIHFGGEKGKRI 1684
Query: 131 GTNRILHHTIGLPD-FTQELRCFQAITCSQAVVNNLGDAHELIDT-----AISTA----- 179
N + D + + F+ I + L T A++
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAF 1744
Query: 180 --LKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSNQLGLE-AAVEATADFLN--K 234
LK I G H S LG E AA+ + AD ++
Sbjct: 1745 EDLKSKG--LIPADATFAG--H----------------S--LG-EYAALASLADVMSIES 1781
Query: 235 AVKPVLVGGPNIRVAKAQKAF--IELADATGYPIAIMPSGKGLVPEHHPHFIGTYWGAVS 292
V+ +V R Q A EL + IAI P G V+
Sbjct: 1782 LVE--VV---FYRGMTMQVAVPRDELGRSNYGMIAINP------------------GRVA 1818
Query: 293 SSFCGEIVESADAYVFVGPIFNDYSSVGYSLLIKKEKAIIVQ------PHRVTV--GNGP 344
+SF E ++ + K +V+ ++ V G+
Sbjct: 1819 ASFSQEALQYVVE------------------RVGKRTGWLVEIVNYNVENQQYVAAGDLR 1860
Query: 345 SLGWVFMADFLSALAKKLRKNTTALENYRRIYVPPGIPVKRAQNEPLRVNVLFKHIQDML 404
+L D ++ + ++ +++ L+ ++ + ++ L
Sbjct: 1861 AL------DTVTNVLNFIK-------------------LQKIDIIELQKSLSLEEVEGHL 1895
Score = 31.2 bits (70), Expect = 1.3
Identities = 51/282 (18%), Positives = 72/282 (25%), Gaps = 105/282 (37%)
Query: 16 APAP---VRG------GASVGTLGRHL-ARRLVEIG---AKDVFSVPGDFNLTLLDHLIA 62
P+P + V HL A + VEI V G
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG------------ 381
Query: 63 EPELNLVGCCNELNAGYAADGYARSRGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIV 122
P +L G L A G +SR + F SE
Sbjct: 382 -PPQSLYGLNLTLRKAKAPSGLDQSR------IPF---------------SERKLKF--- 416
Query: 123 GGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKE 182
+NR L + P + L S + +L + + + ++
Sbjct: 417 ---------SNRFL--PVASPFHSHLLV-----PASDLINKDLVKNNVSFN---AKDIQI 457
Query: 183 SKPVYISIS----CNLPG-IPH---PTFARDPVPFFLAPKVSNQLGLEAAVEATA----D 230
PVY + L G I R PV + E + A D
Sbjct: 458 --PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW------------ETTTQFKATHILD 503
Query: 231 F-------LNKAVKPVLVG-GPNIRVAKAQKAFIELADATGY 264
F L G G +RV A I D G+
Sbjct: 504 FGPGGASGLGVLTHRNKDGTG--VRVIVAGTLDINPDDDYGF 543
Score = 29.6 bits (66), Expect = 3.4
Identities = 38/234 (16%), Positives = 67/234 (28%), Gaps = 94/234 (40%)
Query: 416 DSWFNCQKLR------LPENC-GYEFQMQYGSIGWSVGATLGY-AQAAKDKRVIACIGDG 467
S+F +L+ LPE G+ + + VG LGY + + +V G
Sbjct: 25 ASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKV------G 78
Query: 468 SFQEI-STMIRCGQRSIIFLINNGGYTIEVEIH----------DGP----YNVIKNWDYT 512
F ++ + + + +L N +IH D +IKN+ T
Sbjct: 79 QFDQVLNLCLTEFENC--YLEGN-------DIHALAAKLLQENDTTLVKTKELIKNY-IT 128
Query: 513 G---------------LVNAIHNGEGK-------------CWTAKVRSEDELTEAMKTAT 544
L A+ G + + +EL + +T
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF-------EELRDLYQTYH 181
Query: 545 GEQKDSLCFIEVFV--------HKDDTSK------ELLEWGSRVSAANSRPPNP 584
D I+ D K +LEW + ++ P
Sbjct: 182 VLVGD---LIKFSAETLSELIRTTLDAEKVFTQGLNILEW---LENPSNTPDKD 229
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.010
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 8/33 (24%)
Query: 360 KKLRKNTTALENYRRIYVP---PGIPVKRAQNE 389
+ L+K L+ ++Y P + +K A E
Sbjct: 20 QALKK----LQASLKLYADDSAPALAIK-ATME 47
Score = 28.8 bits (63), Expect = 2.9
Identities = 5/15 (33%), Positives = 9/15 (60%), Gaps = 3/15 (20%)
Query: 13 PGSAPA-PVRGGASV 26
SAPA ++ A++
Sbjct: 34 DDSAPALAIK--ATM 46
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia,
iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A
{Methanosarcina barkeri}
Length = 170
Score = 35.5 bits (81), Expect = 0.020
Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 213 PKVSNQLGLEAAVEAT----ADFLNKAVKPVLVGGPNIRVAKAQKAFIELADATGYPIAI 268
K+ G+ + + A ++KA +P+L+ G + ++++ A PIA
Sbjct: 8 TKLFTSYGVNTSKAVSPEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAA 67
Query: 269 MPSGKGLVPEHHP 281
S ++ +
Sbjct: 68 TGSSLAVLADKDV 80
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 34.8 bits (80), Expect = 0.072
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 6/41 (14%)
Query: 9 STGQPGSAPAPVRGGASV------GTLGRHLARRLVEIGAK 43
S G+A + +V ARRL GA
Sbjct: 237 SLPAHGTASPWWQADGTVLVTGAEEPAAAEAARRLARDGAG 277
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 34.4 bits (79), Expect = 0.11
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 13 PGSAPAPVRGGASV------GTLGRHLARRLVEIGAKDV 45
+ A + +V G +GR LARRL GA+ +
Sbjct: 249 AAAGAASWQPSGTVLITGGMGAIGRRLARRLAAEGAERL 287
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces
nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Length = 496
Score = 34.3 bits (79), Expect = 0.12
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 6/42 (14%)
Query: 10 TGQPGSAPAPVRGGASV------GTLGRHLARRLVEIGAKDV 45
+ SV G +G +ARRL E GA +
Sbjct: 226 APAVPGSGKRPPVHGSVLVTGGTGGIGGRVARRLAEQGAAHL 267
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase,
oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora
erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Length = 486
Score = 34.3 bits (79), Expect = 0.13
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 6/39 (15%)
Query: 13 PGSAPAPVRGGASV------GTLGRHLARRLVEIGAKDV 45
+ + +V G +G +AR L GA +
Sbjct: 216 APATDDEWKPTGTVLVTGGTGGVGGQIARWLARRGAPHL 254
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 33.4 bits (76), Expect = 0.18
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 22 GGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPE 65
G G +G++L L +F V L+ + + +
Sbjct: 7 GAK--GFVGKNLKADLTSTTDHHIFEVHRQTKEEELESALLKAD 48
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid,
transferase; HET: TDP; 2.40A {Escherichia coli}
Length = 621
Score = 33.6 bits (78), Expect = 0.19
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 444 SVGATLGYAQAA----KDKRVIACIGDGS 468
S+ A +G A AA K++R + IGDG+
Sbjct: 126 SISAGIGIAVAAEKEGKNRRTVCVIGDGA 154
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS,
transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Length = 629
Score = 33.6 bits (78), Expect = 0.19
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 444 SVGATLGYAQAA----KDKRVIACIGDGS 468
S+ LG A A KD V A IGDGS
Sbjct: 128 SLTNALGMALARDAQGKDFHVAAVIGDGS 156
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 32.8 bits (75), Expect = 0.27
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 20 VRGGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNLV 69
+ G G +G HL RL+ +V+ + D + + P + V
Sbjct: 5 ILGVN--GFIGNHLTERLLREDHYEVYGL--DIGSDAISRFLNHPHFHFV 50
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 32.4 bits (74), Expect = 0.42
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 11/73 (15%)
Query: 4 ANAMGSTGQPGSAPAPVR-------GGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTL 56
+ MG+ P ++ G G +G HL++R++E +VF + D
Sbjct: 6 HHHMGTLEAQTQGPGSMKAKKVLILGVN--GFIGHHLSKRILETTDWEVFGM--DMQTDR 61
Query: 57 LDHLIAEPELNLV 69
L L+ ++
Sbjct: 62 LGDLVKHERMHFF 74
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho;
thiamine diphosphate-dependent enzyme, alpha-beta fold;
HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A*
3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Length = 845
Score = 31.2 bits (70), Expect = 1.2
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 439 GSIGWSVGATLGYAQAAKDKRVIACIGDGSFQE 471
G +G+++ G V IGDG +
Sbjct: 175 GELGYALSHAYGAVMNNPSLFVPCIIGDGEAET 207
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA
replication, processivity, sliding; 2.40A {Entamoeba
histolytica}
Length = 265
Score = 30.3 bits (67), Expect = 1.4
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 3/83 (3%)
Query: 135 ILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNL 194
+ + L I ++ V + A + I + + + V +S+S
Sbjct: 180 MCETCMTLSALENVDSNGLQIEHNKDVTASF--ALKQISE-FAKSAPLADNVKLSLSGQA 236
Query: 195 PGIPHPTFARDPVPFFLAPKVSN 217
P I + F+LAPK
Sbjct: 237 PLIMEFKGEACVLKFYLAPKFDE 259
>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix
bundle, structural genomics protein structure
initiative; HET: PGE; 2.12A {Streptococcus mutans}
Length = 405
Score = 30.4 bits (68), Expect = 1.8
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 439 GSIGWSVGATLGYAQAAKDKRVIACIGDGSFQEISTMIR 477
G+S G KDKR+ A I +++ + R
Sbjct: 231 AIAGFSGGGYFTAQAVEKDKRIKAWIASTPIYDVAEVFR 269
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 30.2 bits (69), Expect = 2.0
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 20 VRGGASVGTLGRHLARRLVEIGAK----DVFSVPGDFNLTLLDHLIAEPELNLV 69
+ GGA G +G HLAR LV G + D VP + +P L L
Sbjct: 12 ITGGA--GFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELE 63
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes,
fatty acid metabolism, structure-based drug design; HET:
S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1
c.30.1.1 d.142.1.2 PDB: 1w93_A
Length = 554
Score = 29.9 bits (68), Expect = 2.6
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 529 KVRSEDELTEAMKTATGEQKDSLCFIEVFV 558
+V E++ A E S FI
Sbjct: 252 QVEREEDFIALYHQAANEIPGSPIFIMKLA 281
>3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Bacteroides vulgatus atcc 8482}
Length = 391
Score = 29.9 bits (66), Expect = 2.7
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 439 GSIGWSVGATLGYAQAAKDKRVIACIGDGSF 469
G+S+G DK + A + +
Sbjct: 228 VISGFSLGTEPMMVLGVLDKDIYAFVYNDFL 258
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase;
alpha/beta hydrolase, META-cleavage pathway; 2.1A
{Arthrobacter nicotinovorans} SCOP: c.69.1.41
Length = 386
Score = 29.6 bits (66), Expect = 2.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 441 IGWSVGATLGYAQAAKDKRVIACIGDGSF 469
+G S+G AA + R+ ACI G F
Sbjct: 228 LGRSLGGNYALKSAACEPRLAACISWGGF 256
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 29.6 bits (67), Expect = 3.3
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 13/58 (22%)
Query: 20 VRGGASVGTLGRHLARRLVEIGAKDV-----FS------VPGDFNLTLLDHLIAEPEL 66
V GGA G +G +L +RL+E+G V VP + + I + L
Sbjct: 37 VVGGA--GFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDAL 92
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 29.6 bits (67), Expect = 3.4
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 4/35 (11%)
Query: 530 VRSEDELTEAMKTATGEQK----DSLCFIEVFVHK 560
+RSE +L + + A E ++E V +
Sbjct: 190 IRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVER 224
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing,
ATP-binding, biotin, fatty acid biosynthesis, ligase,
lipid synthesis, manganese; 2.10A {Homo sapiens} PDB:
3gid_A 2hjw_A 2yl2_A
Length = 540
Score = 29.5 bits (67), Expect = 3.6
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 529 KVRSEDELTEAMKTATGEQKDSLCFIEVFV 558
K S ++ + E S F+
Sbjct: 246 KAESAEDFPILFRQVQSEIPGSPIFLMKLA 275
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 29.3 bits (66), Expect = 4.1
Identities = 18/117 (15%), Positives = 33/117 (28%), Gaps = 18/117 (15%)
Query: 200 PTFARDPVPFFLAPKVSNQLGLEAAVEATADFLNKAVK---PVLVGGPNIRVAKAQKAFI 256
FARD +P + + Q V+ +++ K VL ++ + + F
Sbjct: 5 NLFARDLLPAKNGEEQTVQFL-LEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFN 63
Query: 257 ELADATGYPIA---------IMPSGKGLVPEHHPHFIGTYWGAVSS-SFCGEIVESA 303
+ + V HP F + GE + S
Sbjct: 64 LELSDHPESLEQILVDCRDTLKYG----VRTGHPRFFNQLSTGLDIIGLAGEWLTST 116
>3kd8_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase;
structural genomics, PSI-2, protein genomics, MCSG,
glycolysis isomerase; 2.60A {Thermoplasma acidophilum}
PDB: 3idd_A
Length = 399
Score = 29.3 bits (65), Expect = 4.1
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 170 ELIDTAISTALKESKPVYISISCNLP-GIPHPTFARDPVPFFLAPK 214
E ID A+ I ++ + + DPVP
Sbjct: 318 EDIDRAMEPLKSIGDHAVICVTGDHSTPCSFKDHSGDPVPIVFYTD 363
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative
splicing, ATP-binding, biotin, fatty acid biosynthesis,
ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens}
PDB: 3jrw_A*
Length = 587
Score = 29.2 bits (66), Expect = 4.1
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 529 KVRSEDELTEAMKTATGEQKDSLCFIEVFV 558
K S ++ + E S F+
Sbjct: 262 KAESAEDFPILFRQVQSEIPGSPIFLMKLA 291
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase;
agrobacterium tumefa structural genomics, PSI-2,
protein structure initiative; 1.85A {Agrobacterium
tumefaciens}
Length = 342
Score = 29.3 bits (66), Expect = 4.1
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 22 GGASVGTLGRHLARRLVEIGAKDVFSVPGDFNLTLLDHLIAEPELNL 68
G A G +GR L +RLV+ G+ TL+D E
Sbjct: 21 GAA--GMVGRKLTQRLVKDGS---LGGKPVEKFTLIDVFQPEAPAGF 62
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 29.2 bits (66), Expect = 4.3
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 530 VRSEDELTEAMKTATGEQK----DSLCFIEVFVHK 560
VR E EL +A A E + +S +IE ++
Sbjct: 174 VREESELEDAFHRAKSEAEKSFGNSEVYIERYIDN 208
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane,
protein transport-prote binding complex; HET: GNP; 2.90A
{Bos taurus} PDB: 2hf6_A
Length = 153
Score = 28.4 bits (63), Expect = 4.5
Identities = 6/55 (10%), Positives = 18/55 (32%), Gaps = 5/55 (9%)
Query: 119 ICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCFQAITCSQAVVNNLGDAHELID 173
++G N+ +L+ + + +A++ N+ +D
Sbjct: 77 FYVIGSSYENELMLMTVLNCLFDSLS-----QMLRKNVEKRALLENMEGLFLAVD 126
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold,
oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum}
SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C*
2oo5_C*
Length = 180
Score = 28.6 bits (64), Expect = 4.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261
+ E A + A K ++V G + VA+AQ A E+AD
Sbjct: 10 AGSAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMADV 49
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear
protein, DNA replication, processivity; 2.30A
{Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2
PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3v60_B 3v61_B 3v62_B*
3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3pge_B 3l0x_B
Length = 258
Score = 28.7 bits (63), Expect = 5.2
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 176 ISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSN 217
I S V I +S P + + FFLAPK ++
Sbjct: 215 IIKGSSLSDRVGIRLSSEAPALFQFDLKSGFLQFFLAPKFND 256
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A
{Geobacillus thermodenitrificans}
Length = 461
Score = 29.0 bits (66), Expect = 5.4
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 530 VRSEDELTEAMKTATGEQK----DSLCFIEVFVHK 560
VRS+ E+ EA + A E K ++E +
Sbjct: 176 VRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIEN 210
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid
ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus
subtilis}
Length = 474
Score = 28.7 bits (64), Expect = 5.5
Identities = 6/55 (10%), Positives = 22/55 (40%)
Query: 451 YAQAAKDKRVIACIGDGSFQEISTMIRCGQRSIIFLINNGGYTIEVEIHDGPYNV 505
+ ++A +K + F ++ ++ + +I + Y + + P ++
Sbjct: 22 FYKSAAEKYNLVSFIPRPFAITASHAALIEKYSVAVIKDKDYFKSLADFEHPDSI 76
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 28.8 bits (65), Expect = 5.9
Identities = 11/94 (11%), Positives = 21/94 (22%), Gaps = 18/94 (19%)
Query: 221 LEAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIEL-ADATGYPIA---------IMP 270
+ A + P P + A + D P+ +
Sbjct: 38 MSHTTSAMKSVFEQVNAPYSGMDP----KALEDAINAVDLDNKNAPLKSVIDDVAELVAK 93
Query: 271 SGKGLVPEHHPHFIGTYWGAVS-SSFCGEIVESA 303
+ HP I + E + +A
Sbjct: 94 ---NAIFTQHPDCIAHLHTPPLMPAVAAEAMIAA 124
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 108
Score = 27.1 bits (61), Expect = 5.9
Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 530 VRSEDELTEAMKTATGEQK----DSLCFIEVFV 558
++E + + ++ E D IE F+
Sbjct: 64 AWDDEETRDGFRLSSQEAASSFGDDRLLIEKFI 96
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication,
DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae}
Length = 798
Score = 28.8 bits (63), Expect = 5.9
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 176 ISTALKESKPVYISISCNLPGIPHPTFARDPVPFFLAPKVSN 217
I S V I +S P + + FFLAPK ++
Sbjct: 755 IIKGSSLSDRVGIRLSSEAPALFQFDLKSGFLQFFLAPKFND 796
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H)
complex, inverted binding of NADP(H), oxidoreductase;
HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Length = 184
Score = 27.9 bits (62), Expect = 7.2
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261
E ++ D + +A ++ G + AKAQ +L
Sbjct: 9 EINLDNAIDMIREANSIIITPGYGLCAAKAQYPIADLVKM 48
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 28.4 bits (64), Expect = 7.2
Identities = 6/23 (26%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 23 GASVGTLGRHLARRLVEIGAKDV 45
GA+ G LG H+ + +
Sbjct: 7 GAT-GHLGTHITNQAIANHIDHF 28
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA
binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii}
SCOP: d.131.1.2 d.131.1.2
Length = 245
Score = 28.1 bits (61), Expect = 7.6
Identities = 21/129 (16%), Positives = 35/129 (27%), Gaps = 18/129 (13%)
Query: 93 CVVTFTVGGLSVLNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFTQELRCF 152
T GL ++ L + G N++ + F
Sbjct: 130 IKATINASGLKNAIGEIAEVADTLLISGNEEKVVVKGEGENKV-EVEFSKDTGSLADIEF 188
Query: 153 QAITCSQAVVNNLGDAHELIDTAISTALKESKPVYISISCNLP-----GIPHPTFARDPV 207
+ S V L D I + K S V ++ + P +
Sbjct: 189 NKESSSAYDVEYLND--------IISLTKLSDYVKVAFADQKPMQLEFNMEGGGKVT--- 237
Query: 208 PFFLAPKVS 216
+ LAPK+S
Sbjct: 238 -YLLAPKLS 245
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic
transhydrogenase, inner membrane, membrane,
oxidoreductase, transmembrane; HET: NAD NAP; NMR
{Escherichia coli}
Length = 186
Score = 27.9 bits (62), Expect = 8.0
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELADA 261
E E TA+ L + ++ G + VA+AQ E+ +
Sbjct: 17 EITAEETAELLKNSHSVIITPGYGMAVAQAQYPVAEITEK 56
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase
subunits, oxidoreductas; HET: NAD NAP; 2.30A
{Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A*
1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Length = 203
Score = 27.8 bits (62), Expect = 8.1
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 222 EAAVEATADFLNKAVKPVLVGGPNIRVAKAQKAFIELAD 260
+ E A + A K ++V G + VA+AQ A E+AD
Sbjct: 33 AGSAEDAAFIMKNASKVIIVPGYGMAVAQAQHALREMAD 71
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin
C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana}
SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 28.1 bits (63), Expect = 9.0
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 12/61 (19%)
Query: 20 VRGGASVGTLGRHLARRLVEIGA----------KDVFSVPGDFNLTLLDHLIAEPELNLV 69
+ G G + H+ARRL G + + L+D + E L +
Sbjct: 34 ITGAG--GFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVT 91
Query: 70 G 70
Sbjct: 92 E 92
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 28.3 bits (63), Expect = 9.6
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 20 VRGGASVGTLGRHLARRLVEIGAKDV 45
+ GG G G LA+ L GA+ +
Sbjct: 1889 ITGGL--GGFGLQLAQWLRLRGAQKL 1912
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 27.7 bits (62), Expect = 9.8
Identities = 7/24 (29%), Positives = 9/24 (37%), Gaps = 2/24 (8%)
Query: 22 GGASVGTLGRHLARRLVEIGAKDV 45
G + G +G L L E K
Sbjct: 6 GSS--GQIGTELVPYLAEKYGKKN 27
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.415
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,298,913
Number of extensions: 589383
Number of successful extensions: 1747
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1646
Number of HSP's successfully gapped: 119
Length of query: 585
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 486
Effective length of database: 3,937,614
Effective search space: 1913680404
Effective search space used: 1913680404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)