BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007918
(585 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/577 (58%), Positives = 437/577 (75%), Gaps = 6/577 (1%)
Query: 5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++ D+DEVL
Sbjct: 7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66
Query: 65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
LA+AE+LG F VGG E+ H LLPPLE+L TVEET VRDKAVESL I + SDL
Sbjct: 67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126
Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
++PLVKRLA G+WFT+R SACGLF + YP +K ELR + LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186
Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEPQDCVAHILP 242
S LG+FA +E ++K++I+ +F +L D DSVRLLAVE C + +LL +D A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246
Query: 243 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 302
+ ++DKSWRVRYMVA++ EL +AVGPE T+ DLVPA+ L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306
Query: 303 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 358
+FC L+ + + + ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 307 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366
Query: 359 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 418
P+FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426
Query: 419 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 478
+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA I P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486
Query: 479 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 538
L M +P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++FNVAK LQ
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546
Query: 539 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 575
+ PI+D S ++ ++P L +LT+D DVDV++FA +A+
Sbjct: 547 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 91/413 (22%), Positives = 163/413 (39%), Gaps = 46/413 (11%)
Query: 57 NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ 116
+DD V A A +LG F + ++P L + E+ VR AVE+ I
Sbjct: 175 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 234
Query: 117 MRESDLVDWYIPLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQLCQDD 175
+ + DL +P +++ A + + R F + P+I KT+L + L +D
Sbjct: 235 LPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC 294
Query: 176 MPMVRRSAASNLGKFAATVEP-----------------------AHLKTDIMSIFEDLT- 211
VR +A+ + +F + H+K+ + S+ L+
Sbjct: 295 EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP 354
Query: 212 ---QDDSVRLLAVEGCAALG--------KLLEPQDCVAHI----------LPVIVNFSQD 250
+D+++ L A L ++ DCV + LP IV ++D
Sbjct: 355 ILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAED 414
Query: 251 KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 310
WRVR + + L +G E L + L D+ +R AA + K
Sbjct: 415 AKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG 474
Query: 311 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFP 370
E A I+P V +S D + R I ++ + G+D T + +LP L + D
Sbjct: 475 KEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVA 534
Query: 371 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 423
+VR N+ L ++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 535 NVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 587
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 81/380 (21%), Positives = 149/380 (39%), Gaps = 14/380 (3%)
Query: 211 TQDDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 270
+D +RL +++ + + L + + +LP + + D+ V +A QL V
Sbjct: 22 NEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAEQLGTFTTLV 80
Query: 271 GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 330
G L+P L E VR A + +P H +P VK L+
Sbjct: 81 GGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDW 140
Query: 331 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 390
R++ + P + A +L F +L D+ P VR SKL + +V+ +D
Sbjct: 141 FTSRTSACGLFSVCYPRVSS-AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD 199
Query: 391 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM----QWLQDK 446
+ ++P LA D VRL +E +A L + L AL M Q +DK
Sbjct: 200 NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP----QEDLEALVMPTLRQAAEDK 255
Query: 447 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS 506
+ +R A+ L + GPE + P ++ + R + + +
Sbjct: 256 SWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA 315
Query: 507 E----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTED 562
+ + S++LP + D ++K +A V+ L PI+ + + + P + +D
Sbjct: 316 DCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKD 375
Query: 563 PDVDVRFFATQAIQSIDHVM 582
+VR + ++ V+
Sbjct: 376 ECPEVRLNIISNLDCVNEVI 395
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/577 (58%), Positives = 437/577 (75%), Gaps = 6/577 (1%)
Query: 5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++ D+DEVL
Sbjct: 6 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
LA+AE+LG F VGG E+ H LLPPLE+L TVEET VRDKAVESL I + SDL
Sbjct: 66 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
++PLVKRLA G+WFT+R SACGLF + YP +K ELR + LC DD PMVRR+AA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185
Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEPQDCVAHILP 242
S LG+FA +E ++K++I+ +F +L D DSVRLLAVE C + +LL +D A ++P
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245
Query: 243 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 302
+ ++DKSWRVRYMVA++ EL +AVGPE T+ DLVPA+ L++D EAEVR AA+ KV
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305
Query: 303 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 358
+FC L+ + + + ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365
Query: 359 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 418
P+FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425
Query: 419 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 478
+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA I P+V
Sbjct: 426 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 485
Query: 479 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 538
L M +P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++FNVAK LQ
Sbjct: 486 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 545
Query: 539 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 575
+ PI+D S ++ ++P L +LT+D DVDV++FA +A+
Sbjct: 546 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 582
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 91/413 (22%), Positives = 163/413 (39%), Gaps = 46/413 (11%)
Query: 57 NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ 116
+DD V A A +LG F + ++P L + E+ VR AVE+ I
Sbjct: 174 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 233
Query: 117 MRESDLVDWYIPLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQLCQDD 175
+ + DL +P +++ A + + R F + P+I KT+L + L +D
Sbjct: 234 LPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC 293
Query: 176 MPMVRRSAASNLGKFAATVEP-----------------------AHLKTDIMSIFEDLT- 211
VR +A+ + +F + H+K+ + S+ L+
Sbjct: 294 EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP 353
Query: 212 ---QDDSVRLLAVEGCAALG--------KLLEPQDCVAHI----------LPVIVNFSQD 250
+D+++ L A L ++ DCV + LP IV ++D
Sbjct: 354 ILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAED 413
Query: 251 KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 310
WRVR + + L +G E L + L D+ +R AA + K
Sbjct: 414 AKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG 473
Query: 311 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFP 370
E A I+P V +S D + R I ++ + G+D T + +LP L + D
Sbjct: 474 KEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVA 533
Query: 371 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 423
+VR N+ L ++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 534 NVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/380 (21%), Positives = 149/380 (39%), Gaps = 14/380 (3%)
Query: 211 TQDDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 270
+D +RL +++ + + L + + +LP + + D+ V +A QL V
Sbjct: 21 NEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAEQLGTFTTLV 79
Query: 271 GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 330
G L+P L E VR A + +P H +P VK L+
Sbjct: 80 GGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDW 139
Query: 331 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 390
R++ + P + A +L F +L D+ P VR SKL + +V+ +D
Sbjct: 140 FTSRTSACGLFSVCYPRVSS-AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD 198
Query: 391 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM----QWLQDK 446
+ ++P LA D VRL +E +A L + L AL M Q +DK
Sbjct: 199 NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP----QEDLEALVMPTLRQAAEDK 254
Query: 447 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS 506
+ +R A+ L + GPE + P ++ + R + + +
Sbjct: 255 SWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA 314
Query: 507 E----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTED 562
+ + S++LP + D ++K +A V+ L PI+ + + + P + +D
Sbjct: 315 DCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKD 374
Query: 563 PDVDVRFFATQAIQSIDHVM 582
+VR + ++ V+
Sbjct: 375 ECPEVRLNIISNLDCVNEVI 394
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 589
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/577 (58%), Positives = 437/577 (75%), Gaps = 6/577 (1%)
Query: 5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++ D+DEVL
Sbjct: 7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66
Query: 65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
LA+AE+LG F VGG E+ H LLPPLE+L TVEET VRDKAVESL I + SDL
Sbjct: 67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126
Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
++PLVKRLA G+WFT+R SACGLF + YP +K ELR + LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186
Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEPQDCVAHILP 242
S LG+FA +E ++K++I+ +F +L D DSVRLLAVE C + +LL +D A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246
Query: 243 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 302
+ ++DKSWRVRYMVA++ EL +AVGPE T+ DLVPA+ L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306
Query: 303 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 358
+FC L+ + + + ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366
Query: 359 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 418
P+FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426
Query: 419 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 478
+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA I P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486
Query: 479 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 538
L M +P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++FNVAK LQ
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546
Query: 539 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 575
+ PI+D S ++ ++P L +LT+D DVDV++FA +A+
Sbjct: 547 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 91/413 (22%), Positives = 163/413 (39%), Gaps = 46/413 (11%)
Query: 57 NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ 116
+DD V A A +LG F + ++P L + E+ VR AVE+ I
Sbjct: 175 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 234
Query: 117 MRESDLVDWYIPLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQLCQDD 175
+ + DL +P +++ A + + R F + P+I KT+L + L +D
Sbjct: 235 LPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC 294
Query: 176 MPMVRRSAASNLGKFAATVEP-----------------------AHLKTDIMSIFEDLT- 211
VR +A+ + +F + H+K+ + S+ L+
Sbjct: 295 EAEVRAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSP 354
Query: 212 ---QDDSVRLLAVEGCAALG--------KLLEPQDCVAHI----------LPVIVNFSQD 250
+D+++ L A L ++ DCV + LP IV ++D
Sbjct: 355 ILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAED 414
Query: 251 KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 310
WRVR + + L +G E L + L D+ +R AA + K
Sbjct: 415 AKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG 474
Query: 311 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFP 370
E A I+P V +S D + R I ++ + G+D T + +LP L + D
Sbjct: 475 KEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVA 534
Query: 371 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 423
+VR N+ L ++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 535 NVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 587
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/577 (58%), Positives = 437/577 (75%), Gaps = 6/577 (1%)
Query: 5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++ D+DEVL
Sbjct: 6 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVD 124
LA+AE+LG F VGG E+ H LLPPLE+L TVEET VRDKAVESL I + SDL
Sbjct: 66 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184
++PLVKRLA G+WFT+R SACGLF + YP +K ELR + LC DD PMVRR+AA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185
Query: 185 SNLGKFAATVEPAHLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEPQDCVAHILP 242
S LG+FA +E ++K++I+ +F +L D DSVRLLAVE C + +LL +D A ++P
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245
Query: 243 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 302
+ ++DKSWRVRYMVA++ EL +AVGPE T+ DLVPA+ L++D EAEVR AA+ KV
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305
Query: 303 TKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 358
+FC L+ + + + ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LL
Sbjct: 306 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365
Query: 359 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 418
P+FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425
Query: 419 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 478
+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA I P+V
Sbjct: 426 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 485
Query: 479 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 538
L M +P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++FNVAK LQ
Sbjct: 486 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 545
Query: 539 LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 575
+ PI+D S ++ ++P L +LT+D DVDV++FA +A+
Sbjct: 546 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 582
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 91/413 (22%), Positives = 163/413 (39%), Gaps = 46/413 (11%)
Query: 57 NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ 116
+DD V A A +LG F + ++P L + E+ VR AVE+ I
Sbjct: 174 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 233
Query: 117 MRESDLVDWYIPLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQLCQDD 175
+ + DL +P +++ A + + R F + P+I KT+L + L +D
Sbjct: 234 LPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC 293
Query: 176 MPMVRRSAASNLGKFAATVEP-----------------------AHLKTDIMSIFEDLT- 211
VR +A+ + +F + H+K+ + S+ L+
Sbjct: 294 EAEVRAAASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSP 353
Query: 212 ---QDDSVRLLAVEGCAALG--------KLLEPQDCVAHI----------LPVIVNFSQD 250
+D+++ L A L ++ DCV + LP IV ++D
Sbjct: 354 ILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAED 413
Query: 251 KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 310
WRVR + + L +G E L + L D+ +R AA + K
Sbjct: 414 AKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG 473
Query: 311 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFP 370
E A I+P V +S D + R I ++ + G+D T + +LP L + D
Sbjct: 474 KEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVA 533
Query: 371 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 423
+VR N+ L ++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 534 NVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/574 (59%), Positives = 435/574 (75%), Gaps = 6/574 (1%)
Query: 8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAM 67
LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++ D+DEVLLA+
Sbjct: 3 LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 62
Query: 68 AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYI 127
AE+LG F VGG E+ H LLPPLE+L TVEET VRDKAVESL I + SDL ++
Sbjct: 63 AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 122
Query: 128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNL 187
PLVKRLA G+WFT+R SACGLF + YP +K ELR + LC DD PMVRR+AAS L
Sbjct: 123 PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKL 182
Query: 188 GKFAATVEPAHLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEPQDCVAHILPVIV 245
G+FA +E ++K++I+ +F +L D DSVRLLAVE C + +LL +D A ++P +
Sbjct: 183 GEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR 242
Query: 246 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF 305
++DKSWRVRYMVA++ EL +AVGPE T+ DLVPA+ L++D EAEVR AA+ KV +F
Sbjct: 243 QAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF 302
Query: 306 CRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF 361
C L+ + + + ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+F
Sbjct: 303 CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLF 362
Query: 362 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 421
L+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY+PL
Sbjct: 363 LAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 422
Query: 422 LASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM 481
LA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA I P+VL M
Sbjct: 423 LAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAM 482
Query: 482 INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 541
+P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++FNVAK LQ + P
Sbjct: 483 SGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP 542
Query: 542 IVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 575
I+D S ++ ++P L +LT+D DVDV++FA +A+
Sbjct: 543 ILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 576
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 91/413 (22%), Positives = 163/413 (39%), Gaps = 46/413 (11%)
Query: 57 NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ 116
+DD V A A +LG F + ++P L + E+ VR AVE+ I
Sbjct: 168 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 227
Query: 117 MRESDLVDWYIPLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQLCQDD 175
+ + DL +P +++ A + + R F + P+I KT+L + L +D
Sbjct: 228 LPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC 287
Query: 176 MPMVRRSAASNLGKFAATVEP-----------------------AHLKTDIMSIFEDLT- 211
VR +A+ + +F + H+K+ + S+ L+
Sbjct: 288 EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP 347
Query: 212 ---QDDSVRLLAVEGCAALG--------KLLEPQDCVAHI----------LPVIVNFSQD 250
+D+++ L A L ++ DCV + LP IV ++D
Sbjct: 348 ILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAED 407
Query: 251 KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 310
WRVR + + L +G E L + L D+ +R AA + K
Sbjct: 408 AKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG 467
Query: 311 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFP 370
E A I+P V +S D + R I ++ + G+D T + +LP L + D
Sbjct: 468 KEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVA 527
Query: 371 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 423
+VR N+ L ++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 528 NVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 580
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/380 (21%), Positives = 149/380 (39%), Gaps = 14/380 (3%)
Query: 211 TQDDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 270
+D +RL +++ + + L + + +LP + + D+ V +A QL V
Sbjct: 15 NEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAEQLGTFTTLV 73
Query: 271 GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 330
G L+P L E VR A + +P H +P VK L+
Sbjct: 74 GGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDW 133
Query: 331 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 390
R++ + P + A +L F +L D+ P VR SKL + +V+ +D
Sbjct: 134 FTSRTSACGLFSVCYPRVSS-AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD 192
Query: 391 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM----QWLQDK 446
+ ++P LA D VRL +E +A L + L AL M Q +DK
Sbjct: 193 NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP----QEDLEALVMPTLRQAAEDK 248
Query: 447 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS 506
+ +R A+ L + GPE + P ++ + R + + +
Sbjct: 249 SWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA 308
Query: 507 E----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTED 562
+ + S++LP + D ++K +A V+ L PI+ + + + P + +D
Sbjct: 309 DCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKD 368
Query: 563 PDVDVRFFATQAIQSIDHVM 582
+VR + ++ V+
Sbjct: 369 ECPEVRLNIISNLDCVNEVI 388
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/574 (59%), Positives = 435/574 (75%), Gaps = 6/574 (1%)
Query: 8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAM 67
LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++ D+DEVLLA+
Sbjct: 1 LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 60
Query: 68 AEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYI 127
AE+LG F VGG E+ H LLPPLE+L TVEET VRDKAVESL I + SDL ++
Sbjct: 61 AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 120
Query: 128 PLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNL 187
PLVKRLA G+WFT+R SACGLF + YP +K ELR + LC DD PMVRR+AAS L
Sbjct: 121 PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKL 180
Query: 188 GKFAATVEPAHLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEPQDCVAHILPVIV 245
G+FA +E ++K++I+ +F +L D DSVRLLAVE C + +LL +D A ++P +
Sbjct: 181 GEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR 240
Query: 246 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF 305
++DKSWRVRYMVA++ EL +AVGPE T+ DLVPA+ L++D EAEVR AA+ KV +F
Sbjct: 241 QAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF 300
Query: 306 CRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIF 361
C L+ + + + ILPC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+F
Sbjct: 301 CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLF 360
Query: 362 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 421
L+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY+PL
Sbjct: 361 LAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 420
Query: 422 LASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM 481
LA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA I P+VL M
Sbjct: 421 LAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAM 480
Query: 482 INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 541
+P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++FNVAK LQ + P
Sbjct: 481 SGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP 540
Query: 542 IVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 575
I+D S ++ ++P L +LT+D DVDV++FA +A+
Sbjct: 541 ILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 574
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 91/413 (22%), Positives = 163/413 (39%), Gaps = 46/413 (11%)
Query: 57 NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ 116
+DD V A A +LG F + ++P L + E+ VR AVE+ I
Sbjct: 166 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 225
Query: 117 MRESDLVDWYIPLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQLCQDD 175
+ + DL +P +++ A + + R F + P+I KT+L + L +D
Sbjct: 226 LPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDC 285
Query: 176 MPMVRRSAASNLGKFAATVEP-----------------------AHLKTDIMSIFEDLT- 211
VR +A+ + +F + H+K+ + S+ L+
Sbjct: 286 EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSP 345
Query: 212 ---QDDSVRLLAVEGCAALG--------KLLEPQDCVAHI----------LPVIVNFSQD 250
+D+++ L A L ++ DCV + LP IV ++D
Sbjct: 346 ILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAED 405
Query: 251 KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 310
WRVR + + L +G E L + L D+ +R AA + K
Sbjct: 406 AKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG 465
Query: 311 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFP 370
E A I+P V +S D + R I ++ + G+D T + +LP L + D
Sbjct: 466 KEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVA 525
Query: 371 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 423
+VR N+ L ++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 526 NVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 578
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 81/380 (21%), Positives = 149/380 (39%), Gaps = 14/380 (3%)
Query: 211 TQDDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 270
+D +RL +++ + + L + + +LP + + D+ V +A QL V
Sbjct: 13 NEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAEQLGTFTTLV 71
Query: 271 GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 330
G L+P L E VR A + +P H +P VK L+
Sbjct: 72 GGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDW 131
Query: 331 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 390
R++ + P + A +L F +L D+ P VR SKL + +V+ +D
Sbjct: 132 FTSRTSACGLFSVCYPRVSS-AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD 190
Query: 391 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM----QWLQDK 446
+ ++P LA D VRL +E +A L + L AL M Q +DK
Sbjct: 191 NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP----QEDLEALVMPTLRQAAEDK 246
Query: 447 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS 506
+ +R A+ L + GPE + P ++ + R + + +
Sbjct: 247 SWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA 306
Query: 507 E----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTED 562
+ + S++LP + D ++K +A V+ L PI+ + + + P + +D
Sbjct: 307 DCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKD 366
Query: 563 PDVDVRFFATQAIQSIDHVM 582
+VR + ++ V+
Sbjct: 367 ECPEVRLNIISNLDCVNEVI 386
>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|D Chain D, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 582
Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/576 (57%), Positives = 424/576 (73%), Gaps = 6/576 (1%)
Query: 6 EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLL 65
+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++ D+DEVLL
Sbjct: 1 DSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLL 60
Query: 66 AMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDW 125
A+AE+LG F VGG E+ H LLPPLE+L TVEET VRDKAVESL I + SDL
Sbjct: 61 ALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH 120
Query: 126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAAS 185
++PLVKRLA G+WFT+R SACGLF + YP +K ELR + LC DD P VRR+AAS
Sbjct: 121 FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPXVRRAAAS 180
Query: 186 NLGKFAATVEPAHLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEPQDCVAHILPV 243
LG+FA +E ++K++I+ F +L D DSVRLLAVE C + +LL +D A + P
Sbjct: 181 KLGEFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVXPT 240
Query: 244 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVT 303
+ ++DKSWRVRY VA++ EL +AVGPE T+ DLVPA+ L +D EAEVR AA+ KV
Sbjct: 241 LRQAAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXKDCEAEVRAAASHKVK 300
Query: 304 KFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP 359
+FC L+ + + ILPC+KEL SD++QHV+SALASVI G++P+LGKD TIE LLP
Sbjct: 301 EFCENLSADCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSPILGKDNTIEHLLP 360
Query: 360 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 419
+FL+ LKDE P+VRLNIIS LD VN+VIGI LSQSLLPAIVELAED WRVRLAIIEY
Sbjct: 361 LFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYX 420
Query: 420 PLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL 479
PLLA QLGV FFD+KL +LC WL D VY+IR+AA +NLK+L E+FG EWA I P+VL
Sbjct: 421 PLLAGQLGVEFFDEKLNSLCXAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVL 480
Query: 480 EMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 539
+P+YL+R T L I++L+ V G +IT LP V+ + D V N++FNVAK LQ +
Sbjct: 481 AXSGDPNYLHRXTTLFCINVLSEVCGQDITTKHXLPTVLRXAGDPVANVRFNVAKSLQKI 540
Query: 540 IPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 575
PI+D S ++ ++P L +LT+D DVDV++FA +A+
Sbjct: 541 GPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 576
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 91/413 (22%), Positives = 157/413 (38%), Gaps = 46/413 (11%)
Query: 57 NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ 116
+DD V A A +LG F + ++P L + E+ VR AVE+ I
Sbjct: 168 SDDTPXVRRAAASKLGEFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQL 227
Query: 117 MRESDLVDWYIPLVKRLAAGEWFTARVSACGLF-HIAYPSAPDILKTELRSIYTQLCQDD 175
+ + DL P +++ A + + R F + P+I KT+L + L +D
Sbjct: 228 LPQEDLEALVXPTLRQAAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXKDC 287
Query: 176 MPMVRRSAASNLGKFAATVEP-----------------------AHLKTDIMSIFEDLT- 211
VR +A+ + +F + H+K+ + S+ L+
Sbjct: 288 EAEVRAAASHKVKEFCENLSADCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSP 347
Query: 212 ---QDDSVRLLAVEGCAALG--------KLLEPQDCVAHI----------LPVIVNFSQD 250
+D+++ L A L ++ DCV + LP IV ++D
Sbjct: 348 ILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAED 407
Query: 251 KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 310
WRVR + L +G E L L D+ +R AA + K
Sbjct: 408 AKWRVRLAIIEYXPLLAGQLGVEFFDEKLNSLCXAWLVDHVYAIREAATSNLKKLVEKFG 467
Query: 311 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFP 370
E A I+P V S D + R I ++ + G+D T + LP L D
Sbjct: 468 KEWAHATIIPKVLAXSGDPNYLHRXTTLFCINVLSEVCGQDITTKHXLPTVLRXAGDPVA 527
Query: 371 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 423
+VR N+ L ++ ++ L + P + +L +D+ V+ E + +L+
Sbjct: 528 NVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 580
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 77/376 (20%), Positives = 145/376 (38%), Gaps = 6/376 (1%)
Query: 211 TQDDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 270
+D +RL +++ + + L + + +LP + + D+ V +A QL V
Sbjct: 15 NEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAEQLGTFTTLV 73
Query: 271 GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 330
G L+P L E VR A + +P H +P VK L+
Sbjct: 74 GGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDW 133
Query: 331 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 390
R++ + P + A +L F +L D+ P VR SKL + +V+ +D
Sbjct: 134 FTSRTSACGLFSVCYPRVSS-AVKAELRQYFRNLCSDDTPXVRRAAASKLGEFAKVLELD 192
Query: 391 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 450
+ ++P LA D VRL +E +A L + + Q +DK + +
Sbjct: 193 NVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVXPTLRQAAEDKSWRV 252
Query: 451 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--- 507
R A+ L + GPE + P + + R + + ++
Sbjct: 253 RYXVADKFTELQKAVGPEITKTDLVPAFQNLXKDCEAEVRAAASHKVKEFCENLSADCRE 312
Query: 508 -ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVD 566
+ S++LP + D ++K +A V+ L PI+ + + + P + +D +
Sbjct: 313 NVIXSQILPCIKELVSDANQHVKSALASVIXGLSPILGKDNTIEHLLPLFLAQLKDECPE 372
Query: 567 VRFFATQAIQSIDHVM 582
VR + ++ V+
Sbjct: 373 VRLNIISNLDCVNEVI 388
>pdb|3C5W|A Chain A, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 232
Score = 241 bits (614), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 116/218 (53%), Positives = 159/218 (72%)
Query: 358 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 417
+ + + L++E +RLN I KL + +G++ LSQSLLPAIVELAED WRVRLAIIE
Sbjct: 9 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRLAIIE 68
Query: 418 YIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 477
Y+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA I P+
Sbjct: 69 YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPK 128
Query: 478 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQ 537
VL M +P+YL+RMT L I++L+ V G +IT +LP V+ + D V N++FNVAK LQ
Sbjct: 129 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 188
Query: 538 SLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 575
+ PI+D S ++ ++P L +LT+D DVDV++FA +A+
Sbjct: 189 KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 226
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 109/217 (50%), Gaps = 14/217 (6%)
Query: 8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDD-EVLLA 66
LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ER + L+P + E +D V LA
Sbjct: 6 LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRLA 65
Query: 67 MAEELGVFIPYVGGVEHAHVLLPPLETLCTV----EETCVRDKAVESLCRIGSQMRESDL 122
+ E ++P + G L +LC +R+ A +L ++ + +
Sbjct: 66 IIE----YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA 121
Query: 123 VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS---APDILKTELRSIYTQLCQDDMPMV 179
IP V ++ + R++ LF I S DI + ++ D + V
Sbjct: 122 HATIIPKVLAMSGDPNYLHRMTT--LFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANV 179
Query: 180 RRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDSV 216
R + A +L K ++ + L++++ I E LTQD V
Sbjct: 180 RFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDV 216
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 93/213 (43%)
Query: 211 TQDDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 270
+D +RL +++ + + L + +LP IV ++D WRVR + + L +
Sbjct: 18 NEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQL 77
Query: 271 GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 330
G E L + L D+ +R AA + K E A I+P V +S D +
Sbjct: 78 GVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPN 137
Query: 331 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 390
R I ++ + G+D T + +LP L + D +VR N+ L ++ ++
Sbjct: 138 YLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS 197
Query: 391 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 423
L + P + +L +D+ V+ E + +L+
Sbjct: 198 TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 230
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 83/179 (46%), Gaps = 8/179 (4%)
Query: 241 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAG 300
+ V+++ +++ ++R +L + A+G E L+PA V L D + VR+A
Sbjct: 9 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRLA--- 65
Query: 301 KVTKFCRILNPELAIQHILPCVKELSS----DSSQHVRSALASVIMGMAPLLGKDATIEQ 356
+ ++ +L +L ++ + L D +R A S + + GK+
Sbjct: 66 -IIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHAT 124
Query: 357 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAI 415
++P L++ D R+ + ++ +++V G D+ ++ +LP ++ +A D VR +
Sbjct: 125 IIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNV 183
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 22/180 (12%)
Query: 158 DILKTELRSI--YTQLCQDDMPM-VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-- 212
DI + L+ I ++ +C ++M + + S A+ G+ + K + + LTQ
Sbjct: 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330
Query: 213 ---DDSVRLLAVEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVANQL 263
D++ C A G L D V H+LP I ++ W RY A +
Sbjct: 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW--RYRDAAVM 388
Query: 264 YELCEAVGPEPTRM-----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 318
C GPEP+++ +P + L++D VR AA V + C +L PE AI +
Sbjct: 389 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL-PEAAINDV 447
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 22/180 (12%)
Query: 158 DILKTELRSI--YTQLCQDDMPM-VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-- 212
DI + L+ I ++ +C ++M + + S A+ G+ + K + + LTQ
Sbjct: 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330
Query: 213 ---DDSVRLLAVEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVANQL 263
D++ C A G L D V H+LP I ++ W RY A +
Sbjct: 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW--RYRDAAVM 388
Query: 264 YELCEAVGPEPTRM-----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 318
C GPEP+++ +P + L++D VR AA V + C +L PE AI +
Sbjct: 389 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL-PEAAINDV 447
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 22/180 (12%)
Query: 158 DILKTELRSI--YTQLCQDDMPM-VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-- 212
DI + L+ I ++ +C ++M + + S A+ G+ + K + + LTQ
Sbjct: 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330
Query: 213 ---DDSVRLLAVEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVANQL 263
D++ C A G L D V H+LP I ++ W RY A +
Sbjct: 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW--RYRDAAVM 388
Query: 264 YELCEAVGPEPTRM-----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 318
C GPEP+++ +P + L++D VR AA V + C +L PE AI +
Sbjct: 389 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL-PEAAINDV 447
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 22/180 (12%)
Query: 158 DILKTELRSI--YTQLCQDDMPM-VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-- 212
DI + L+ I ++ +C ++M + + S A+ G+ + K + + LTQ
Sbjct: 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330
Query: 213 ---DDSVRLLAVEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVANQL 263
D++ C A G L D V H+LP I ++ W RY A +
Sbjct: 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW--RYRDAAVM 388
Query: 264 YELCEAVGPEPTRM-----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 318
C GPEP+++ +P + L++D VR AA V + C +L PE AI +
Sbjct: 389 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL-PEAAINDV 447
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 22/180 (12%)
Query: 158 DILKTELRSI--YTQLCQDDMPM-VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-- 212
DI + L+ I ++ +C ++M + + S A+ G+ + K + + LTQ
Sbjct: 146 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 205
Query: 213 ---DDSVRLLAVEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVANQL 263
D++ C A G L D V H+LP I ++ W RY A +
Sbjct: 206 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW--RYRDAAVM 263
Query: 264 YELCEAVGPEPTRM-----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 318
C GPEP+++ +P + L++D VR AA V + C +L PE AI +
Sbjct: 264 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL-PEAAINDV 322
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 74/180 (41%), Gaps = 22/180 (12%)
Query: 158 DILKTELRSI--YTQLCQDDMPM-VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-- 212
DI + L+ I ++ +C ++M + + S A+ G+ + K + + LTQ
Sbjct: 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330
Query: 213 ---DDSVRLLAVEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVANQL 263
D++ C A G L D V H+LP I ++ WR R
Sbjct: 331 TKQDENDDDDDWNPCKAAGVCLMLLSTCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAF 390
Query: 264 YELCEAVGPEPTRM-----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 318
+ E GPEP ++ +P + L++D VR A V + C +L PE AI +
Sbjct: 391 GSILE--GPEPNQLKPLVIQAMPTLIELMKDPSVVVRDTTAWTVGRICELL-PEAAINDV 447
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 21/171 (12%)
Query: 158 DILKTELRSI--YTQLCQDDMPM-VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-- 212
DI + L+ I ++ +C ++M + + S A+ G+ + K + + LTQ
Sbjct: 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330
Query: 213 ---DDSVRLLAVEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVANQL 263
D++ C A G L D V H+LP I ++ W RY A +
Sbjct: 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW--RYRDAAVM 388
Query: 264 YELCEAVGPEPTRM-----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 309
C GPEP+++ +P + L++D VR AA V + C +L
Sbjct: 389 AFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta
pdb|1GCJ|B Chain B, N-Terminal Fragment Of Importin-Beta
Length = 460
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 71/180 (39%), Gaps = 22/180 (12%)
Query: 158 DILKTELRSI--YTQLCQDDMPM-VRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ-- 212
DI + L+ I ++ +C ++ + + S A+ G+ + K + + LTQ
Sbjct: 277 DIDEVALQGIEFWSNVCDEEXDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 336
Query: 213 ---DDSVRLLAVEGCAALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYMVANQL 263
D++ C A G L D V H+LP I ++ WR R
Sbjct: 337 TKQDENDDDDDWNPCKAAGVCLXLLSTCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVXAF 396
Query: 264 YELCEAVGPEPTRM-----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 318
+ E GPEP ++ P + L +D VR A V + C +L PE AI +
Sbjct: 397 GSILE--GPEPNQLKPLVIQAXPTLIELXKDPSVVVRDTTAWTVGRICELL-PEAAINDV 453
>pdb|3LTJ|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 201
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 30/176 (17%)
Query: 167 IYTQLCQDDMPMVRRSAASNLGKFA--ATVEPAHLKTDIMSIFEDLTQDDSVRLLAVEGC 224
+Y + QDD VRR+AA LGK VEP ++ +D +D VR A +
Sbjct: 18 MYIKNLQDDSYYVRRAAAYALGKIGDERAVEP------LIKALKD--EDAWVRRAAAD-- 67
Query: 225 AALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV 284
ALG++ + + + P+I + W VR A L ++ + EP +
Sbjct: 68 -ALGQIGDER----AVEPLIKALKDEDGW-VRQSAAVALGQIGDERAVEP--------LI 113
Query: 285 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASV 340
+ L+D + VRIAAA + + + E A++ ++ +K+ Q AL +
Sbjct: 114 KALKDEDWFVRIAAAFALGE----IGDERAVEPLIKALKDEDGWVRQSAADALGEI 165
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 74/182 (40%), Gaps = 30/182 (16%)
Query: 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEE 70
+ + I L++D +R + L I G+ER + LI L D+D V A A+
Sbjct: 16 VEMYIKNLQDDSYYVRRAAAYALGKI----GDERAVEPLIKAL---KDEDAWVRRAAADA 68
Query: 71 LGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLV 130
LG G E A + PL E+ VR A +L +IG + PL+
Sbjct: 69 LGQI-----GDERA---VEPLIKALKDEDGWVRQSAAVALGQIGDERAVE-------PLI 113
Query: 131 KRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKF 190
K L +WF +A L I A + L + +D+ VR+SAA LG+
Sbjct: 114 KALKDEDWFVRIAAAFALGEIGDERAVEPL--------IKALKDEDGWVRQSAADALGEI 165
Query: 191 AA 192
Sbjct: 166 GG 167
>pdb|3LTM|A Chain A, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
pdb|3LTM|B Chain B, Structure Of A New Family Of Artificial Alpha Helicoidal
Repeat Proteins (Alpha-Rep) Based On Thermostable
Heat-Like Repeats
Length = 211
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 30/176 (17%)
Query: 167 IYTQLCQDDMPMVRRSAASNLGKFA--ATVEPAHLKTDIMSIFEDLTQDDSVRLLAVEGC 224
+Y + QDD VRR+AA LGK VEP ++ +D +D VR A +
Sbjct: 23 MYIKNLQDDSYYVRRAAAYALGKIGDERAVEP------LIKALKD--EDAWVRRAAAD-- 72
Query: 225 AALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV 284
ALG++ + + + P+I + W VR A L ++ + EP +
Sbjct: 73 -ALGQIGDER----AVEPLIKALKDEDGW-VRQSAAVALGQIGDERAVEPL--------I 118
Query: 285 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASV 340
+ L+D + VRIAAA + + + E A++ ++ +K+ Q AL +
Sbjct: 119 KALKDEDWFVRIAAAFALGE----IGDERAVEPLIKALKDEDGWVRQSAADALGEI 170
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 74/182 (40%), Gaps = 30/182 (16%)
Query: 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEE 70
+ + I L++D +R + L I G+ER + LI L D+D V A A+
Sbjct: 21 VEMYIKNLQDDSYYVRRAAAYALGKI----GDERAVEPLIKAL---KDEDAWVRRAAADA 73
Query: 71 LGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLV 130
LG G E A + PL E+ VR A +L +IG + PL+
Sbjct: 74 LGQI-----GDERA---VEPLIKALKDEDGWVRQSAAVALGQIGDERAVE-------PLI 118
Query: 131 KRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKF 190
K L +WF +A L I A + L + +D+ VR+SAA LG+
Sbjct: 119 KALKDEDWFVRIAAAFALGEIGDERAVEPL--------IKALKDEDGWVRQSAADALGEI 170
Query: 191 AA 192
Sbjct: 171 GG 172
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 33/167 (19%)
Query: 287 LRDNEAEVRIAAAGKVTKFCR---ILNPELAIQHILPCVKELSSDSSQHVRSALASVIMG 343
L D A VR A + C+ I +P++ Q + D S +VR A A I
Sbjct: 100 LNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF-----DKSTNVRRATAFAI-- 152
Query: 344 MAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 403
++ ATI P+ ++LLKD DVR N + +N+ D+ VE
Sbjct: 153 --SVINDKATI----PLLINLLKDPNGDVR-NWAAFAININKYDNSDIRD-----CFVEX 200
Query: 404 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDK--LGALCMQWLQDKVY 448
+D++ VR+ I +G+ + DK L LC + ++ VY
Sbjct: 201 LQDKNEEVRIEAI---------IGLSYRKDKRVLSVLCDELKKNTVY 238
>pdb|1QB4|A Chain A, Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruvate
Carboxylase
pdb|1JQN|A Chain A, Crystal Structure Of E.Coli Phosphoenolpyruvate
Carboxylase In Complex With Mn2+ And Dcdp
pdb|1FIY|A Chain A, Three-Dimensional Structure Of Phosphoenolpyruvate
Carboxylase From Escherichia Coli At 2.8 A Resolution
Length = 883
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 26 RLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAH 85
R+ +IR+LS +RA G + R+EL+ L ++D+ LL +A F+ E H
Sbjct: 34 RVETIRKLSKSSRA-GNDANRQELLTTLQNLSNDE---LLPVARAFSQFLNLANTAEQYH 89
Query: 86 VLLPPLETLCTVE 98
+ P E E
Sbjct: 90 SISPKGEAASNPE 102
>pdb|3PID|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase With A C-Terminal
Six- Histidine Tag
Length = 432
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 156 APDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDS 215
+P+ L+ E R++Y L + + RSA + +FA ++ +K DI ++F D T+ ++
Sbjct: 175 SPEFLR-EGRALYDNLHPSRIVIGERSARAE--RFADLLKEGAIKQDIPTLFTDSTEAEA 231
Query: 216 VRLLA 220
++L A
Sbjct: 232 IKLFA 236
>pdb|3PHL|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase
pdb|3PJG|A Chain A, Crystal Structure Of Udp-Glucose Dehydrogenase From
Klebsiella Pneumoniae Complexed With Product
Udp-Glucuronic Acid
pdb|3PLN|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Udp-Glucose
6-Dehydrogenase Complexed With Udp-Glucose
pdb|3PLR|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Udp-Glucose
6-Dehydrogenase Complexed With Nadh And Udp-Glucose
Length = 424
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 156 APDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDS 215
+P+ L+ E R++Y L + + RSA + +FA ++ +K DI ++F D T+ ++
Sbjct: 175 SPEFLR-EGRALYDNLHPSRIVIGERSARAE--RFADLLKEGAIKQDIPTLFTDSTEAEA 231
Query: 216 VRLLA 220
++L A
Sbjct: 232 IKLFA 236
>pdb|1B47|A Chain A, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
pdb|1B47|B Chain B, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
pdb|1B47|C Chain C, Structure Of The N-Terminal Domain Of Cbl In Complex With
Its Binding Site In Zap-70
Length = 304
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 301 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 351
KV + C+ NP+LA+++ P + +L D+ QH+R+ L S G LG++
Sbjct: 19 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTIL-SRYEGKMETLGEN 66
>pdb|2CBL|A Chain A, N-Terminal Domain Of Cbl In Complex With Its Binding Site
On Zap-70
Length = 305
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 301 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 351
KV + C+ NP+LA+++ P + +L D+ QH+R+ L S G LG++
Sbjct: 19 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTIL-SRYEGKMETLGEN 66
>pdb|1YVH|A Chain A, Crystal Structure Of The C-Cbl Tkb Domain In Complex With
The Aps Ptyr-618 Phosphopeptide
pdb|3BUM|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Sprouty2
pdb|3BUN|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Sprouty4
pdb|3BUO|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Egf Receptor'
pdb|3BUO|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Egf Receptor'
pdb|3BUW|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Syk
pdb|3BUW|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In Syk
pdb|3BUX|B Chain B, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In C-Met
pdb|3BUX|D Chain D, Crystal Structure Of C-Cbl-Tkb Domain Complexed With Its
Binding Motif In C-Met
pdb|3OB1|B Chain B, Crystal Structure Of C-Cbl Tkb Domain In Complex With
Double Phosphorylated Spry2 Peptide
pdb|3OB2|B Chain B, Crystal Structure Of C-Cbl Tkb Domain In Complex With
Double Phosphorylated Egfr Peptide
pdb|3PLF|B Chain B, Reverse Binding Mode Of Metrd Peptide Complexed With C-Cbl
Tkb Domain
pdb|3PLF|D Chain D, Reverse Binding Mode Of Metrd Peptide Complexed With C-Cbl
Tkb Domain
Length = 329
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 301 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 351
KV + C+ NP+LA+++ P + +L D+ QH+R+ L S G LG++
Sbjct: 43 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTIL-SRYEGKMETLGEN 90
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 301 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 351
KV + C+ NP+LA+++ P + +L D+ QH+R+ L S G LG++
Sbjct: 19 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTIL-SRYEGKMETLGEN 66
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 301 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 351
KV + C+ NP+LA+++ P + +L D+ QH+R+ L S G LG++
Sbjct: 19 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTIL-SRYEGKMETLGEN 66
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 301 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 351
KV + C+ NP+LA+++ P + +L D+ QH+R+ L S G LG++
Sbjct: 21 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTIL-SRYEGKMETLGEN 68
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 301 KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 351
KV + C+ NP+LA+++ P + +L D+ QH+R+ L S G LG++
Sbjct: 21 KVVRLCQ--NPKLALKNSPPYILDLLPDTYQHLRTIL-SRYEGKMETLGEN 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,704,322
Number of Sequences: 62578
Number of extensions: 615440
Number of successful extensions: 1921
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1631
Number of HSP's gapped (non-prelim): 87
length of query: 585
length of database: 14,973,337
effective HSP length: 104
effective length of query: 481
effective length of database: 8,465,225
effective search space: 4071773225
effective search space used: 4071773225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)