Query 007918
Match_columns 585
No_of_seqs 270 out of 2204
Neff 11.4
Searched_HMMs 46136
Date Thu Mar 28 17:04:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007918.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007918hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0211 Protein phosphatase 2A 100.0 4.9E-50 1.1E-54 397.3 43.2 577 5-581 78-665 (759)
2 KOG0211 Protein phosphatase 2A 100.0 7.3E-32 1.6E-36 268.4 33.5 523 61-584 96-629 (759)
3 KOG2171 Karyopherin (importin) 100.0 2.6E-28 5.6E-33 244.7 51.6 542 9-558 4-613 (1075)
4 KOG2171 Karyopherin (importin) 100.0 7.9E-27 1.7E-31 234.1 52.6 570 13-583 83-765 (1075)
5 KOG2023 Nuclear transport rece 100.0 1.2E-28 2.7E-33 231.1 35.6 567 6-582 10-734 (885)
6 KOG0213 Splicing factor 3b, su 100.0 3E-27 6.6E-32 224.3 41.6 556 10-579 364-1064(1172)
7 KOG2023 Nuclear transport rece 100.0 3E-26 6.5E-31 215.3 35.2 561 12-578 93-815 (885)
8 KOG1241 Karyopherin (importin) 100.0 1.4E-23 3E-28 200.8 44.2 524 57-582 100-765 (859)
9 COG5181 HSH155 U2 snRNP splice 100.0 1.9E-24 4.2E-29 201.4 35.3 556 10-579 169-869 (975)
10 KOG0213 Splicing factor 3b, su 99.9 5E-23 1.1E-27 195.9 44.3 559 11-583 478-1110(1172)
11 KOG1241 Karyopherin (importin) 99.9 6.1E-22 1.3E-26 189.7 45.5 574 6-582 124-813 (859)
12 KOG1824 TATA-binding protein-i 99.9 6.1E-22 1.3E-26 193.5 43.9 567 9-580 6-722 (1233)
13 COG5181 HSH155 U2 snRNP splice 99.9 9.2E-21 2E-25 177.1 39.8 554 13-584 285-916 (975)
14 PLN03200 cellulose synthase-in 99.9 1.4E-19 3E-24 197.0 49.9 560 10-580 100-764 (2102)
15 PLN03200 cellulose synthase-in 99.9 8.6E-20 1.9E-24 198.6 47.1 558 10-581 190-812 (2102)
16 KOG1242 Protein containing ada 99.9 8E-19 1.7E-23 166.6 37.8 520 50-576 19-560 (569)
17 PF01602 Adaptin_N: Adaptin N 99.9 2.8E-19 6.1E-24 183.4 38.0 502 13-538 8-521 (526)
18 KOG1242 Protein containing ada 99.9 1E-18 2.2E-23 165.9 34.6 509 19-535 27-558 (569)
19 PF01602 Adaptin_N: Adaptin N 99.9 1.7E-18 3.6E-23 177.8 37.5 472 85-579 41-523 (526)
20 KOG1824 TATA-binding protein-i 99.9 6.1E-17 1.3E-21 159.0 43.1 519 56-579 14-637 (1233)
21 PRK09687 putative lyase; Provi 99.8 3.9E-19 8.4E-24 161.6 23.2 254 279-577 24-279 (280)
22 COG5215 KAP95 Karyopherin (imp 99.8 3.1E-15 6.7E-20 139.5 48.2 557 22-581 147-807 (858)
23 PRK13800 putative oxidoreducta 99.8 8.6E-19 1.9E-23 187.0 26.7 275 240-577 622-896 (897)
24 COG5215 KAP95 Karyopherin (imp 99.8 1.4E-15 3.1E-20 141.7 42.7 501 56-558 103-730 (858)
25 PRK09687 putative lyase; Provi 99.8 2E-18 4.4E-23 157.0 22.8 257 237-538 21-279 (280)
26 KOG0212 Uncharacterized conser 99.8 5.2E-17 1.1E-21 151.0 29.9 395 168-563 5-428 (675)
27 PTZ00429 beta-adaptin; Provisi 99.8 6.7E-15 1.5E-19 149.9 45.6 497 10-539 33-544 (746)
28 KOG0915 Uncharacterized conser 99.8 6.6E-16 1.4E-20 159.2 36.5 449 124-579 817-1343(1702)
29 PRK13800 putative oxidoreducta 99.8 4.2E-17 9.2E-22 174.2 27.5 270 206-538 625-896 (897)
30 PTZ00429 beta-adaptin; Provisi 99.8 1.4E-13 3E-18 140.4 45.5 471 3-502 62-546 (746)
31 KOG0915 Uncharacterized conser 99.7 1.9E-14 4.1E-19 148.8 37.1 302 84-389 816-1164(1702)
32 KOG1240 Protein kinase contain 99.7 3.1E-16 6.7E-21 158.1 22.4 306 204-522 424-745 (1431)
33 KOG1240 Protein kinase contain 99.7 1.4E-15 2.9E-20 153.5 24.7 267 178-445 438-746 (1431)
34 KOG0212 Uncharacterized conser 99.7 1.1E-13 2.5E-18 129.1 33.2 413 94-508 8-450 (675)
35 KOG1060 Vesicle coat complex A 99.6 1.2E-12 2.6E-17 127.1 32.9 512 12-572 38-563 (968)
36 KOG0166 Karyopherin (importin) 99.6 1.1E-12 2.4E-17 124.7 30.4 338 237-576 107-482 (514)
37 KOG0166 Karyopherin (importin) 99.6 4.4E-13 9.5E-18 127.3 25.5 340 242-581 69-437 (514)
38 KOG4224 Armadillo repeat prote 99.6 3.1E-13 6.7E-18 119.6 19.8 383 162-544 84-496 (550)
39 KOG1943 Beta-tubulin folding c 99.5 1E-08 2.2E-13 104.1 47.1 451 125-583 341-840 (1133)
40 PF10508 Proteasom_PSMB: Prote 99.5 8.5E-10 1.8E-14 110.3 37.3 364 215-579 53-461 (503)
41 KOG1943 Beta-tubulin folding c 99.4 4.1E-09 8.9E-14 106.9 39.0 457 83-542 338-882 (1133)
42 KOG4224 Armadillo repeat prote 99.4 2.8E-11 6.1E-16 107.4 20.6 377 203-580 87-493 (550)
43 PF10508 Proteasom_PSMB: Prote 99.4 4.8E-09 1E-13 105.0 36.3 380 97-501 49-461 (503)
44 COG5240 SEC21 Vesicle coat com 99.3 9.4E-09 2E-13 97.1 32.1 460 56-540 74-554 (898)
45 KOG1248 Uncharacterized conser 99.3 5.2E-07 1.1E-11 93.2 46.7 517 57-581 322-899 (1176)
46 KOG1061 Vesicle coat complex A 99.3 2.2E-09 4.8E-14 105.5 28.4 512 9-543 13-570 (734)
47 COG5240 SEC21 Vesicle coat com 99.3 1.7E-08 3.6E-13 95.5 32.1 468 84-579 63-554 (898)
48 KOG1062 Vesicle coat complex A 99.3 7E-08 1.5E-12 95.2 37.5 419 56-497 116-576 (866)
49 KOG1060 Vesicle coat complex A 99.3 1.6E-08 3.6E-13 99.0 32.5 452 11-493 73-562 (968)
50 KOG2259 Uncharacterized conser 99.3 6.4E-10 1.4E-14 106.5 22.5 304 247-564 166-500 (823)
51 PF12348 CLASP_N: CLASP N term 99.3 1.8E-10 3.9E-15 103.8 18.4 185 395-582 7-208 (228)
52 KOG1020 Sister chromatid cohes 99.2 1.2E-06 2.5E-11 92.6 43.9 525 11-540 818-1495(1692)
53 KOG1061 Vesicle coat complex A 99.2 4E-08 8.7E-13 96.9 31.4 403 155-574 78-522 (734)
54 COG5064 SRP1 Karyopherin (impo 99.2 4.5E-09 9.7E-14 92.8 22.1 338 239-576 114-492 (526)
55 COG1413 FOG: HEAT repeat [Ener 99.2 6E-09 1.3E-13 100.1 25.4 278 239-578 43-333 (335)
56 KOG1062 Vesicle coat complex A 99.2 1.3E-07 2.9E-12 93.3 34.0 415 126-573 104-574 (866)
57 KOG1059 Vesicle coat complex A 99.2 1.1E-06 2.4E-11 85.8 39.6 286 82-384 105-400 (877)
58 COG5064 SRP1 Karyopherin (impo 99.2 3.8E-10 8.2E-15 99.4 14.9 262 317-578 114-396 (526)
59 KOG1991 Nuclear transport rece 99.2 3.7E-06 8E-11 85.5 44.4 209 374-583 390-627 (1010)
60 COG1413 FOG: HEAT repeat [Ener 99.2 3.3E-09 7.1E-14 101.9 22.6 250 278-581 43-305 (335)
61 KOG1243 Protein kinase [Genera 99.2 4.2E-10 9.2E-15 109.4 16.2 253 328-582 265-517 (690)
62 KOG2259 Uncharacterized conser 99.2 2.3E-08 5.1E-13 96.1 27.4 291 238-544 197-514 (823)
63 KOG1248 Uncharacterized conser 99.2 1.7E-06 3.6E-11 89.7 41.5 478 30-515 371-910 (1176)
64 KOG1020 Sister chromatid cohes 99.2 1.7E-06 3.8E-11 91.4 42.0 491 87-580 817-1405(1692)
65 KOG2274 Predicted importin 9 [ 99.2 4.4E-06 9.5E-11 83.9 42.4 209 368-580 462-689 (1005)
66 TIGR02270 conserved hypothetic 99.2 9.2E-09 2E-13 98.5 23.4 207 319-578 88-294 (410)
67 KOG1059 Vesicle coat complex A 99.1 4.1E-07 8.9E-12 88.7 31.0 234 67-308 126-366 (877)
68 PF12348 CLASP_N: CLASP N term 99.1 1.3E-08 2.9E-13 91.7 20.2 186 280-468 9-211 (228)
69 TIGR02270 conserved hypothetic 99.1 3.3E-08 7.2E-13 94.8 22.7 239 241-540 56-295 (410)
70 KOG1992 Nuclear export recepto 99.1 2.9E-06 6.2E-11 84.3 35.5 529 10-545 6-672 (960)
71 KOG1243 Protein kinase [Genera 99.0 6.5E-09 1.4E-13 101.4 15.8 256 287-544 263-518 (690)
72 KOG1078 Vesicle coat complex C 99.0 4.7E-06 1E-10 82.5 34.5 457 56-540 73-531 (865)
73 COG5096 Vesicle coat complex, 99.0 1.8E-05 3.8E-10 80.3 39.0 458 18-502 28-519 (757)
74 KOG1078 Vesicle coat complex C 99.0 5.8E-06 1.3E-10 81.8 33.0 466 84-579 62-531 (865)
75 KOG1820 Microtubule-associated 98.9 1.3E-07 2.9E-12 96.9 20.9 189 391-583 249-446 (815)
76 KOG1058 Vesicle coat complex C 98.9 2.7E-05 5.9E-10 76.8 34.6 338 216-580 115-463 (948)
77 KOG2137 Protein kinase [Signal 98.9 2E-07 4.3E-12 91.6 20.3 236 329-567 285-524 (700)
78 KOG1077 Vesicle coat complex A 98.9 8.8E-05 1.9E-09 72.8 35.7 281 59-348 123-435 (938)
79 KOG2062 26S proteasome regulat 98.9 3.3E-05 7.2E-10 76.1 32.9 157 397-566 521-680 (929)
80 KOG1077 Vesicle coat complex A 98.8 4.2E-05 9.1E-10 75.0 32.9 436 82-539 107-585 (938)
81 COG5096 Vesicle coat complex, 98.8 6.7E-06 1.5E-10 83.2 28.2 239 237-485 53-296 (757)
82 KOG4535 HEAT and armadillo rep 98.8 5.9E-06 1.3E-10 77.1 24.9 484 18-505 5-606 (728)
83 KOG0414 Chromosome condensatio 98.8 0.00019 4E-09 75.0 38.0 145 429-579 914-1063(1251)
84 KOG4535 HEAT and armadillo rep 98.8 1.5E-05 3.2E-10 74.5 27.4 287 293-579 270-602 (728)
85 KOG1058 Vesicle coat complex C 98.8 3.5E-05 7.7E-10 76.1 30.8 344 135-502 109-463 (948)
86 KOG1820 Microtubule-associated 98.8 1.9E-06 4.1E-11 88.7 23.3 359 126-507 64-448 (815)
87 PF12460 MMS19_C: RNAPII trans 98.8 6.2E-05 1.3E-09 74.1 33.0 304 252-558 56-413 (415)
88 PF12460 MMS19_C: RNAPII trans 98.8 4.9E-05 1.1E-09 74.9 32.0 285 99-385 56-394 (415)
89 KOG1991 Nuclear transport rece 98.7 0.0005 1.1E-08 70.6 44.2 428 14-466 9-535 (1010)
90 PF12755 Vac14_Fab1_bd: Vacuol 98.7 1.4E-07 3E-12 70.1 9.5 84 489-572 2-89 (97)
91 KOG2032 Uncharacterized conser 98.7 3.7E-05 8E-10 72.4 27.2 257 317-580 258-531 (533)
92 PF05804 KAP: Kinesin-associat 98.7 0.00015 3.1E-09 74.4 32.5 366 206-580 254-649 (708)
93 PF12755 Vac14_Fab1_bd: Vacuol 98.6 5.9E-07 1.3E-11 66.7 10.7 82 295-376 3-88 (97)
94 KOG2137 Protein kinase [Signal 98.5 6E-06 1.3E-10 81.5 17.5 231 214-447 287-521 (700)
95 PF13646 HEAT_2: HEAT repeats; 98.5 5.5E-07 1.2E-11 67.2 7.9 86 475-576 1-88 (88)
96 PF04826 Arm_2: Armadillo-like 98.5 1.8E-05 3.9E-10 70.9 18.3 203 368-570 25-252 (254)
97 PF04826 Arm_2: Armadillo-like 98.5 2.4E-05 5.2E-10 70.1 18.5 204 328-531 24-252 (254)
98 PF12717 Cnd1: non-SMC mitotic 98.5 2.3E-05 5E-10 67.0 17.7 111 330-443 1-111 (178)
99 KOG4653 Uncharacterized conser 98.5 4.3E-05 9.4E-10 76.7 21.7 176 325-506 735-922 (982)
100 KOG0567 HEAT repeat-containing 98.5 4.3E-05 9.3E-10 66.0 18.8 221 324-580 43-280 (289)
101 KOG1293 Proteins containing ar 98.4 0.0011 2.4E-08 65.1 30.1 452 12-464 12-534 (678)
102 KOG4413 26S proteasome regulat 98.4 0.00057 1.2E-08 61.0 25.4 335 106-463 63-439 (524)
103 PF13646 HEAT_2: HEAT repeats; 98.4 3.5E-06 7.6E-11 62.8 10.1 84 320-419 2-87 (88)
104 PF12717 Cnd1: non-SMC mitotic 98.4 3.5E-05 7.6E-10 65.8 17.4 111 369-483 1-111 (178)
105 KOG2062 26S proteasome regulat 98.4 0.00032 6.9E-09 69.5 25.3 259 164-449 414-680 (929)
106 KOG1992 Nuclear export recepto 98.4 0.004 8.7E-08 62.9 40.5 360 22-384 52-526 (960)
107 PF05804 KAP: Kinesin-associat 98.4 0.0013 2.8E-08 67.7 30.1 380 168-558 255-676 (708)
108 PF05918 API5: Apoptosis inhib 98.4 0.00011 2.3E-09 72.5 21.5 284 252-542 35-342 (556)
109 KOG1293 Proteins containing ar 98.4 0.003 6.5E-08 62.2 30.7 135 444-578 387-531 (678)
110 cd00020 ARM Armadillo/beta-cat 98.3 4.8E-06 1E-10 66.5 10.1 106 435-540 8-119 (120)
111 cd00020 ARM Armadillo/beta-cat 98.3 3.4E-06 7.4E-11 67.3 9.1 109 471-579 5-119 (120)
112 KOG0567 HEAT repeat-containing 98.3 5.3E-05 1.1E-09 65.5 15.8 235 241-539 38-278 (289)
113 PF05918 API5: Apoptosis inhib 98.3 0.0026 5.7E-08 63.0 29.3 293 203-505 25-348 (556)
114 PF13001 Ecm29: Proteasome sta 98.3 0.00087 1.9E-08 67.5 26.7 406 87-504 25-490 (501)
115 KOG2274 Predicted importin 9 [ 98.3 0.0078 1.7E-07 61.6 43.5 304 254-561 377-718 (1005)
116 KOG4413 26S proteasome regulat 98.3 0.0024 5.2E-08 57.2 25.4 320 220-542 63-440 (524)
117 KOG2025 Chromosome condensatio 98.2 0.00048 1E-08 68.0 21.9 224 180-421 59-291 (892)
118 COG5218 YCG1 Chromosome conden 98.1 0.0098 2.1E-07 57.8 33.3 168 11-191 93-265 (885)
119 PF05004 IFRD: Interferon-rela 98.1 0.00085 1.8E-08 62.6 21.5 180 403-582 51-259 (309)
120 PF05004 IFRD: Interferon-rela 98.1 0.0021 4.6E-08 60.0 24.0 186 280-466 45-260 (309)
121 KOG0413 Uncharacterized conser 98.1 0.016 3.5E-07 59.7 40.7 180 126-305 473-683 (1529)
122 KOG0168 Putative ubiquitin fus 98.1 0.0094 2E-07 60.6 28.2 151 160-310 208-367 (1051)
123 COG5098 Chromosome condensatio 98.1 0.016 3.4E-07 57.6 40.7 149 426-580 884-1037(1128)
124 KOG0168 Putative ubiquitin fus 98.1 0.02 4.4E-07 58.3 32.0 396 163-563 168-655 (1051)
125 KOG2032 Uncharacterized conser 98.0 0.013 2.9E-07 55.8 34.8 274 250-540 228-530 (533)
126 KOG2025 Chromosome condensatio 98.0 0.021 4.6E-07 57.0 34.5 269 89-382 9-291 (892)
127 PF13001 Ecm29: Proteasome sta 98.0 0.0061 1.3E-07 61.5 26.0 220 356-578 237-486 (501)
128 KOG2956 CLIP-associating prote 98.0 0.00093 2E-08 62.9 18.2 190 239-433 287-486 (516)
129 KOG2956 CLIP-associating prote 98.0 0.0024 5.3E-08 60.2 20.7 199 367-574 298-506 (516)
130 PF13513 HEAT_EZ: HEAT-like re 98.0 2.7E-05 5.9E-10 51.6 6.0 53 331-383 1-55 (55)
131 PF13513 HEAT_EZ: HEAT-like re 97.9 1.8E-05 3.8E-10 52.5 4.8 52 487-538 1-54 (55)
132 KOG1525 Sister chromatid cohes 97.9 0.02 4.3E-07 62.7 29.4 145 433-580 258-405 (1266)
133 KOG4653 Uncharacterized conser 97.9 0.0027 5.9E-08 64.4 21.1 185 242-428 730-922 (982)
134 KOG1967 DNA repair/transcripti 97.9 0.047 1E-06 56.3 40.3 146 433-578 866-1022(1030)
135 PF14500 MMS19_N: Dos2-interac 97.8 0.011 2.3E-07 53.7 21.9 224 168-394 4-246 (262)
136 KOG0413 Uncharacterized conser 97.8 0.064 1.4E-06 55.6 39.6 144 294-442 947-1091(1529)
137 KOG1949 Uncharacterized conser 97.8 0.017 3.7E-07 57.5 23.4 146 357-502 175-331 (1005)
138 KOG1525 Sister chromatid cohes 97.7 0.0086 1.9E-07 65.4 23.3 209 173-386 195-406 (1266)
139 KOG1967 DNA repair/transcripti 97.7 0.078 1.7E-06 54.8 40.6 146 394-539 866-1022(1030)
140 KOG1851 Uncharacterized conser 97.7 0.12 2.7E-06 56.6 37.5 149 394-543 1525-1680(1710)
141 PF14500 MMS19_N: Dos2-interac 97.7 0.028 6.1E-07 51.0 22.2 227 324-555 6-251 (262)
142 KOG1949 Uncharacterized conser 97.7 0.023 5E-07 56.6 22.4 143 320-462 177-330 (1005)
143 PF02985 HEAT: HEAT repeat; I 97.6 0.0001 2.2E-09 41.7 4.0 28 436-463 2-29 (31)
144 COG5116 RPN2 26S proteasome re 97.6 0.0016 3.4E-08 62.8 14.1 246 292-563 425-674 (926)
145 PF02985 HEAT: HEAT repeat; I 97.6 8.6E-05 1.9E-09 42.1 3.4 28 553-580 2-29 (31)
146 PLN03076 ARF guanine nucleotid 97.6 0.17 3.7E-06 58.2 31.4 269 199-468 1134-1494(1780)
147 PF08506 Cse1: Cse1; InterPro 97.6 0.021 4.5E-07 54.8 20.7 127 446-575 223-370 (370)
148 KOG2933 Uncharacterized conser 97.5 0.0044 9.6E-08 55.3 14.5 176 396-577 89-274 (334)
149 KOG2933 Uncharacterized conser 97.5 0.0036 7.8E-08 55.9 13.7 173 278-454 88-268 (334)
150 PF01347 Vitellogenin_N: Lipop 97.5 0.017 3.6E-07 60.9 21.7 163 395-575 431-617 (618)
151 COG5116 RPN2 26S proteasome re 97.5 0.011 2.4E-07 57.2 17.8 134 281-428 519-654 (926)
152 COG5218 YCG1 Chromosome conden 97.4 0.14 3.1E-06 50.2 39.2 240 11-265 13-263 (885)
153 PF01347 Vitellogenin_N: Lipop 97.4 0.021 4.6E-07 60.2 20.5 265 163-458 325-617 (618)
154 PF12719 Cnd3: Nuclear condens 97.4 0.12 2.6E-06 48.6 23.2 214 363-579 34-284 (298)
155 PF12719 Cnd3: Nuclear condens 97.4 0.086 1.9E-06 49.5 21.9 160 244-405 32-207 (298)
156 PLN03076 ARF guanine nucleotid 97.4 0.25 5.4E-06 56.9 28.8 272 235-506 1133-1493(1780)
157 smart00638 LPD_N Lipoprotein N 97.3 0.049 1.1E-06 56.8 21.4 165 395-574 393-572 (574)
158 KOG2021 Nuclear mRNA export fa 97.3 0.26 5.7E-06 49.9 40.9 464 90-557 197-782 (980)
159 KOG1822 Uncharacterized conser 97.2 0.14 2.9E-06 57.4 23.6 232 347-578 867-1125(2067)
160 KOG1822 Uncharacterized conser 97.2 0.63 1.4E-05 52.5 37.9 228 159-386 872-1128(2067)
161 PF08506 Cse1: Cse1; InterPro 97.2 0.073 1.6E-06 51.1 19.6 139 292-458 225-370 (370)
162 smart00638 LPD_N Lipoprotein N 97.2 0.072 1.6E-06 55.5 21.1 152 368-535 409-572 (574)
163 KOG1517 Guanine nucleotide bin 97.1 0.024 5.3E-07 59.1 16.1 208 334-542 487-733 (1387)
164 KOG0414 Chromosome condensatio 97.0 0.64 1.4E-05 49.9 39.6 151 347-503 910-1065(1251)
165 KOG1517 Guanine nucleotide bin 97.0 0.045 9.8E-07 57.2 17.2 173 215-387 485-673 (1387)
166 KOG0891 DNA-dependent protein 97.0 1.3 2.7E-05 52.6 30.8 530 7-558 479-1056(2341)
167 KOG1993 Nuclear transport rece 97.0 0.54 1.2E-05 48.2 35.6 182 391-575 484-680 (978)
168 KOG2160 Armadillo/beta-catenin 96.9 0.12 2.5E-06 47.9 17.3 174 407-580 95-282 (342)
169 KOG2973 Uncharacterized conser 96.9 0.29 6.2E-06 44.2 18.9 56 523-578 255-313 (353)
170 KOG2011 Sister chromatid cohes 96.9 0.45 9.9E-06 50.9 23.2 130 405-539 297-433 (1048)
171 KOG0392 SNF2 family DNA-depend 96.7 0.11 2.4E-06 55.7 17.4 219 244-464 82-326 (1549)
172 KOG0392 SNF2 family DNA-depend 96.7 0.13 2.7E-06 55.2 17.5 173 370-543 143-327 (1549)
173 PF04118 Dopey_N: Dopey, N-ter 96.6 0.63 1.4E-05 43.2 21.8 179 357-541 55-254 (307)
174 PF13251 DUF4042: Domain of un 96.6 0.07 1.5E-06 45.1 12.3 125 438-581 44-175 (182)
175 PF13251 DUF4042: Domain of un 96.5 0.043 9.3E-07 46.3 10.9 25 480-504 47-71 (182)
176 PF11864 DUF3384: Domain of un 96.5 1.1 2.3E-05 45.2 34.4 138 279-423 177-329 (464)
177 KOG2213 Apoptosis inhibitor 5/ 96.5 0.74 1.6E-05 43.0 19.8 254 142-427 41-317 (460)
178 PF12530 DUF3730: Protein of u 96.4 0.64 1.4E-05 41.8 21.5 192 171-370 9-217 (234)
179 PF10363 DUF2435: Protein of u 96.4 0.07 1.5E-06 39.3 9.9 82 399-485 7-89 (92)
180 KOG0946 ER-Golgi vesicle-tethe 96.2 1.7 3.8E-05 44.7 30.6 308 175-501 35-398 (970)
181 cd00256 VATPase_H VATPase_H, r 96.2 1.3 2.8E-05 43.2 25.2 150 182-341 53-211 (429)
182 PF10363 DUF2435: Protein of u 96.2 0.072 1.6E-06 39.3 9.0 70 475-544 5-75 (92)
183 PF11864 DUF3384: Domain of un 96.1 1.8 3.8E-05 43.6 32.1 278 22-306 3-329 (464)
184 KOG2021 Nuclear mRNA export fa 96.0 2.1 4.6E-05 43.8 41.9 307 248-560 202-585 (980)
185 PF14664 RICTOR_N: Rapamycin-i 96.0 1.6 3.4E-05 42.2 22.6 216 164-385 26-269 (371)
186 cd00256 VATPase_H VATPase_H, r 96.0 1.8 3.9E-05 42.3 27.1 330 227-578 61-423 (429)
187 PF11865 DUF3385: Domain of un 95.9 0.06 1.3E-06 44.8 8.6 138 394-542 9-158 (160)
188 PF12530 DUF3730: Protein of u 95.9 1.2 2.7E-05 39.9 22.8 194 364-566 9-218 (234)
189 KOG0891 DNA-dependent protein 95.9 5.8 0.00013 47.5 38.2 507 67-582 464-1043(2341)
190 PF01603 B56: Protein phosphat 95.8 2.1 4.5E-05 42.2 21.8 58 289-346 101-162 (409)
191 PF03224 V-ATPase_H_N: V-ATPas 95.8 1.8 4E-05 41.0 19.3 173 398-570 108-304 (312)
192 cd08050 TAF6 TATA Binding Prot 95.8 0.25 5.4E-06 47.1 13.3 130 365-501 187-339 (343)
193 KOG2011 Sister chromatid cohes 95.7 3.8 8.2E-05 44.4 22.6 129 443-574 296-429 (1048)
194 PF12054 DUF3535: Domain of un 95.6 0.67 1.4E-05 45.9 16.1 96 97-192 98-208 (441)
195 PF12074 DUF3554: Domain of un 95.6 1.5 3.2E-05 42.2 18.3 70 237-307 20-90 (339)
196 PF08569 Mo25: Mo25-like; Int 95.6 2.2 4.7E-05 40.4 23.0 207 352-563 72-313 (335)
197 KOG2549 Transcription initiati 95.5 0.42 9.2E-06 46.8 13.6 140 161-307 205-370 (576)
198 PF11865 DUF3385: Domain of un 95.5 0.11 2.4E-06 43.2 8.7 31 238-268 9-40 (160)
199 PF04118 Dopey_N: Dopey, N-ter 95.5 1.1 2.3E-05 41.8 15.8 126 215-345 70-200 (307)
200 COG5656 SXM1 Importin, protein 95.4 3.8 8.3E-05 42.1 42.7 116 351-466 403-531 (970)
201 PF08161 NUC173: NUC173 domain 95.3 0.42 9.2E-06 41.3 11.9 108 371-480 15-124 (198)
202 PF01603 B56: Protein phosphat 95.3 3.4 7.3E-05 40.8 22.8 209 248-458 99-321 (409)
203 PF08161 NUC173: NUC173 domain 95.3 0.91 2E-05 39.3 13.8 164 412-578 17-197 (198)
204 PF10274 ParcG: Parkin co-regu 95.3 0.45 9.8E-06 40.0 11.4 69 432-500 36-107 (183)
205 PF10274 ParcG: Parkin co-regu 95.1 0.74 1.6E-05 38.7 12.2 114 394-507 37-169 (183)
206 PF05536 Neurochondrin: Neuroc 95.0 4.8 0.0001 41.3 28.5 175 215-392 72-268 (543)
207 KOG2213 Apoptosis inhibitor 5/ 95.0 3.2 6.9E-05 39.1 22.5 69 253-327 38-106 (460)
208 COG5234 CIN1 Beta-tubulin fold 95.0 4.9 0.00011 41.0 22.9 68 507-579 686-757 (993)
209 PF08167 RIX1: rRNA processing 95.0 1.2 2.7E-05 37.3 13.5 111 433-545 24-147 (165)
210 KOG1048 Neural adherens juncti 94.9 1.1 2.4E-05 46.1 15.2 64 11-76 235-304 (717)
211 KOG2122 Beta-catenin-binding p 94.8 7.6 0.00016 43.5 21.1 325 162-504 234-603 (2195)
212 KOG2549 Transcription initiati 94.8 2.2 4.7E-05 42.2 16.0 73 430-502 284-370 (576)
213 KOG2160 Armadillo/beta-catenin 94.7 3.7 8E-05 38.4 18.6 173 292-464 97-283 (342)
214 PF14664 RICTOR_N: Rapamycin-i 94.5 4.9 0.00011 38.9 22.0 220 355-578 24-267 (371)
215 KOG2022 Nuclear transport rece 94.5 7.5 0.00016 40.9 36.2 364 102-467 440-871 (982)
216 PF10521 DUF2454: Protein of u 94.4 1 2.3E-05 41.8 12.9 134 235-368 115-277 (282)
217 cd08050 TAF6 TATA Binding Prot 94.4 0.72 1.6E-05 44.1 12.0 139 161-306 176-339 (343)
218 PF03378 CAS_CSE1: CAS/CSE pro 94.4 6 0.00013 39.3 19.9 214 98-313 42-278 (435)
219 PF10521 DUF2454: Protein of u 94.4 1.2 2.6E-05 41.4 13.2 133 433-565 118-279 (282)
220 PF12830 Nipped-B_C: Sister ch 94.3 0.72 1.6E-05 39.7 11.0 68 434-503 8-75 (187)
221 PF12074 DUF3554: Domain of un 94.3 5.4 0.00012 38.4 19.9 218 334-560 4-253 (339)
222 KOG1851 Uncharacterized conser 94.2 12 0.00026 42.3 35.3 149 433-583 1525-1681(1710)
223 PF11701 UNC45-central: Myosin 94.2 0.37 8E-06 40.1 8.7 132 445-577 16-156 (157)
224 PF14868 DUF4487: Domain of un 94.2 7.5 0.00016 39.6 20.9 70 356-425 479-553 (559)
225 KOG2022 Nuclear transport rece 94.1 9.1 0.0002 40.4 34.9 172 216-392 440-626 (982)
226 PF07571 DUF1546: Protein of u 94.1 0.2 4.4E-06 37.0 6.1 69 444-516 16-88 (92)
227 PF11701 UNC45-central: Myosin 93.9 0.39 8.5E-06 39.9 8.2 94 97-191 16-116 (157)
228 KOG2759 Vacuolar H+-ATPase V1 93.8 6.4 0.00014 37.7 25.0 193 105-308 65-272 (442)
229 KOG1848 Uncharacterized conser 93.7 6.9 0.00015 43.4 18.3 217 169-385 848-1132(1610)
230 KOG4500 Rho/Rac GTPase guanine 93.7 6.9 0.00015 37.6 33.5 182 317-501 315-518 (604)
231 PF08167 RIX1: rRNA processing 93.6 3 6.5E-05 35.0 13.1 111 394-506 24-147 (165)
232 KOG0803 Predicted E3 ubiquitin 93.6 10 0.00022 42.9 20.1 206 359-564 44-289 (1312)
233 PF08389 Xpo1: Exportin 1-like 93.6 1.7 3.7E-05 35.7 11.8 47 487-535 100-147 (148)
234 cd03568 VHS_STAM VHS domain fa 93.6 2.4 5.1E-05 34.5 11.9 96 404-505 13-113 (144)
235 KOG2005 26S proteasome regulat 93.5 9.9 0.00021 38.7 18.7 250 160-424 449-704 (878)
236 KOG0889 Histone acetyltransfer 93.5 12 0.00027 45.9 21.3 283 238-523 983-1330(3550)
237 PF03224 V-ATPase_H_N: V-ATPas 93.5 7.1 0.00015 37.0 20.2 150 187-344 60-225 (312)
238 cd03568 VHS_STAM VHS domain fa 93.4 1.1 2.4E-05 36.5 9.7 97 443-545 13-114 (144)
239 COG5095 TAF6 Transcription ini 93.4 2.3 5E-05 38.3 12.1 132 364-502 206-359 (450)
240 KOG2149 Uncharacterized conser 93.2 2.2 4.7E-05 40.5 12.3 104 442-545 66-174 (393)
241 COG5656 SXM1 Importin, protein 93.1 12 0.00026 38.7 43.6 143 394-536 407-566 (970)
242 PF12231 Rif1_N: Rap1-interact 93.1 9.1 0.0002 37.3 27.2 215 153-387 80-305 (372)
243 PF04078 Rcd1: Cell differenti 93.1 4.6 9.9E-05 36.2 13.6 71 122-192 92-168 (262)
244 KOG2081 Nuclear transport regu 92.9 11 0.00024 37.6 36.5 209 289-504 258-497 (559)
245 KOG1993 Nuclear transport rece 92.9 14 0.0003 38.6 28.3 172 251-424 499-688 (978)
246 cd03569 VHS_Hrs_Vps27p VHS dom 92.8 2.3 5E-05 34.6 10.8 71 475-545 43-118 (142)
247 cd03567 VHS_GGA VHS domain fam 92.8 3.1 6.7E-05 33.6 11.3 68 477-544 42-119 (139)
248 KOG2149 Uncharacterized conser 92.6 1.2 2.6E-05 42.1 10.0 109 11-120 60-175 (393)
249 PF12231 Rif1_N: Rap1-interact 92.6 11 0.00023 36.8 29.4 265 291-577 59-349 (372)
250 KOG2229 Protein required for a 92.5 11 0.00025 36.9 23.4 82 226-309 5-88 (616)
251 PF07571 DUF1546: Protein of u 92.5 0.59 1.3E-05 34.6 6.4 70 249-322 16-89 (92)
252 cd03567 VHS_GGA VHS domain fam 92.5 4.8 0.0001 32.5 12.4 98 403-506 13-120 (139)
253 PF08713 DNA_alkylation: DNA a 92.5 7.2 0.00016 34.5 15.5 132 397-543 53-186 (213)
254 KOG2081 Nuclear transport regu 92.1 14 0.0003 36.9 36.3 386 160-580 60-495 (559)
255 cd03569 VHS_Hrs_Vps27p VHS dom 92.1 4.6 9.9E-05 32.8 11.6 98 404-507 17-119 (142)
256 COG5234 CIN1 Beta-tubulin fold 92.1 16 0.00035 37.5 26.4 68 468-540 686-757 (993)
257 PF12054 DUF3535: Domain of un 91.9 15 0.00032 36.7 22.4 74 62-135 102-178 (441)
258 KOG1048 Neural adherens juncti 91.8 18 0.0004 37.7 21.9 108 433-540 517-640 (717)
259 PF11698 V-ATPase_H_C: V-ATPas 91.8 0.61 1.3E-05 36.0 5.8 67 512-578 43-113 (119)
260 COG5098 Chromosome condensatio 91.6 18 0.00039 37.2 32.8 105 280-384 301-414 (1128)
261 PF12830 Nipped-B_C: Sister ch 91.2 0.96 2.1E-05 39.0 7.3 72 470-544 5-77 (187)
262 PF08623 TIP120: TATA-binding 90.8 0.54 1.2E-05 39.1 5.1 59 486-545 40-98 (169)
263 PF00514 Arm: Armadillo/beta-c 90.8 0.52 1.1E-05 28.5 3.9 28 552-579 13-40 (41)
264 PF00514 Arm: Armadillo/beta-c 90.7 0.48 1E-05 28.7 3.7 30 511-540 11-40 (41)
265 cd03561 VHS VHS domain family; 90.7 6.2 0.00013 31.7 11.1 96 405-506 14-116 (133)
266 COG5537 IRR1 Cohesin [Cell div 90.6 21 0.00045 36.1 18.0 138 441-581 282-423 (740)
267 PF12765 Cohesin_HEAT: HEAT re 90.5 0.34 7.3E-06 29.6 2.8 23 278-300 18-40 (42)
268 PF11698 V-ATPase_H_C: V-ATPas 90.4 1.4 3.1E-05 34.1 6.7 55 330-384 57-114 (119)
269 cd03561 VHS VHS domain family; 90.4 4.2 9.1E-05 32.7 9.9 96 444-545 14-116 (133)
270 PF00790 VHS: VHS domain; Int 90.4 7.3 0.00016 31.7 11.4 96 404-505 18-121 (140)
271 PF08623 TIP120: TATA-binding 90.3 1.1 2.3E-05 37.4 6.4 61 250-311 38-98 (169)
272 KOG0803 Predicted E3 ubiquitin 90.2 39 0.00084 38.5 20.8 233 250-483 52-330 (1312)
273 smart00288 VHS Domain present 90.1 8.3 0.00018 31.0 11.3 96 404-505 13-114 (133)
274 PF00790 VHS: VHS domain; Int 89.9 6.3 0.00014 32.0 10.6 76 471-546 40-123 (140)
275 KOG4524 Uncharacterized conser 89.8 32 0.00069 37.0 35.8 93 472-564 802-902 (1014)
276 PF08064 UME: UME (NUC010) dom 89.7 6.8 0.00015 30.0 10.0 60 369-430 28-89 (107)
277 PF05536 Neurochondrin: Neuroc 89.7 27 0.00059 36.0 29.3 174 253-429 71-266 (543)
278 PF12765 Cohesin_HEAT: HEAT re 89.3 0.85 1.8E-05 27.8 3.8 25 433-457 17-41 (42)
279 COG5537 IRR1 Cohesin [Cell div 89.2 21 0.00046 36.0 15.0 137 400-540 280-421 (740)
280 smart00288 VHS Domain present 89.1 4.3 9.3E-05 32.6 8.9 74 472-545 36-115 (133)
281 KOG0889 Histone acetyltransfer 89.0 72 0.0016 40.0 31.0 151 433-583 983-1158(3550)
282 KOG2759 Vacuolar H+-ATPase V1 88.9 23 0.0005 34.1 29.0 118 182-308 65-187 (442)
283 KOG4524 Uncharacterized conser 88.7 38 0.00083 36.5 27.6 91 394-484 802-900 (1014)
284 PF08064 UME: UME (NUC010) dom 88.7 7.9 0.00017 29.6 9.8 57 292-350 29-87 (107)
285 PF08713 DNA_alkylation: DNA a 88.3 17 0.00038 32.0 17.5 131 202-347 51-185 (213)
286 KOG2122 Beta-catenin-binding p 87.8 45 0.00098 38.0 17.4 70 278-347 530-602 (2195)
287 cd00197 VHS_ENTH_ANTH VHS, ENT 87.5 9.5 0.00021 29.7 9.9 36 395-430 37-72 (115)
288 PF03378 CAS_CSE1: CAS/CSE pro 86.7 36 0.00077 33.9 21.3 191 160-352 68-278 (435)
289 cd03565 VHS_Tom1 VHS domain fa 86.7 11 0.00023 30.7 9.9 59 486-544 52-118 (141)
290 KOG0946 ER-Golgi vesicle-tethe 86.5 47 0.001 35.0 39.3 297 10-306 23-398 (970)
291 KOG2973 Uncharacterized conser 86.2 28 0.0006 32.1 20.4 101 244-347 8-112 (353)
292 COG5101 CRM1 Importin beta-rel 85.7 45 0.00097 34.1 31.3 171 118-288 474-668 (1053)
293 PF11841 DUF3361: Domain of un 85.6 15 0.00033 30.3 10.1 112 435-546 12-136 (160)
294 PF08389 Xpo1: Exportin 1-like 85.5 18 0.0004 29.4 13.2 47 292-340 100-147 (148)
295 KOG2005 26S proteasome regulat 85.4 48 0.001 34.2 18.8 75 464-542 631-705 (878)
296 cd03572 ENTH_epsin_related ENT 84.6 17 0.00038 28.4 10.0 71 510-580 36-119 (122)
297 COG5095 TAF6 Transcription ini 84.5 21 0.00046 32.5 11.2 19 528-546 303-321 (450)
298 PF12612 TFCD_C: Tubulin foldi 84.1 9.1 0.0002 33.2 9.0 28 435-462 8-35 (193)
299 COG5369 Uncharacterized conser 83.8 3.4 7.4E-05 40.7 6.6 108 433-540 430-544 (743)
300 KOG4500 Rho/Rac GTPase guanine 83.3 46 0.001 32.3 30.1 108 433-540 314-430 (604)
301 PF14225 MOR2-PAG1_C: Cell mor 83.3 36 0.00079 31.1 13.4 131 279-416 112-249 (262)
302 smart00802 UME Domain in UVSB 82.9 18 0.0004 27.6 9.0 58 371-430 30-89 (107)
303 KOG1932 TATA binding protein a 82.7 51 0.0011 36.3 14.8 90 487-579 882-979 (1180)
304 cd03565 VHS_Tom1 VHS domain fa 82.2 25 0.00055 28.5 11.4 99 403-507 13-120 (141)
305 KOG2038 CAATT-binding transcri 82.0 72 0.0016 33.6 22.6 68 316-385 303-370 (988)
306 PF12397 U3snoRNP10: U3 small 81.9 23 0.0005 27.8 11.3 34 394-427 5-39 (121)
307 smart00567 EZ_HEAT E-Z type HE 80.5 3.1 6.8E-05 22.9 3.2 13 488-500 2-14 (30)
308 COG5101 CRM1 Importin beta-rel 80.3 74 0.0016 32.7 33.7 151 396-546 482-653 (1053)
309 smart00802 UME Domain in UVSB 80.2 24 0.00052 27.0 9.3 59 177-235 29-89 (107)
310 KOG2229 Protein required for a 79.8 68 0.0015 31.9 29.7 350 201-581 19-382 (616)
311 KOG3678 SARM protein (with ste 79.6 38 0.00083 33.1 11.7 145 436-580 182-336 (832)
312 KOG1222 Kinesin associated pro 78.7 71 0.0015 31.5 27.8 356 215-580 278-663 (791)
313 KOG2199 Signal transducing ada 78.3 14 0.00031 34.9 8.3 104 249-359 22-131 (462)
314 KOG1848 Uncharacterized conser 78.2 1.3E+02 0.0028 34.3 24.4 216 363-579 849-1131(1610)
315 PF11935 DUF3453: Domain of un 77.8 54 0.0012 29.6 18.9 175 365-558 2-211 (239)
316 PF07539 DRIM: Down-regulated 77.7 16 0.00035 29.6 7.7 54 160-218 14-67 (141)
317 PF12397 U3snoRNP10: U3 small 77.7 32 0.0007 27.0 11.0 35 354-388 4-39 (121)
318 cd06561 AlkD_like A new struct 77.2 48 0.001 28.7 13.9 75 476-558 108-182 (197)
319 PF09324 DUF1981: Domain of un 76.8 19 0.00041 26.2 7.2 69 509-577 14-85 (86)
320 COG5369 Uncharacterized conser 76.8 11 0.00024 37.3 7.5 107 472-578 430-543 (743)
321 PF08767 CRM1_C: CRM1 C termin 76.0 73 0.0016 30.3 24.0 80 407-486 132-227 (319)
322 KOG3036 Protein involved in ce 75.9 50 0.0011 29.4 10.3 67 435-501 125-196 (293)
323 KOG1087 Cytosolic sorting prot 75.3 30 0.00064 34.5 10.1 99 402-506 12-116 (470)
324 PF08569 Mo25: Mo25-like; Int 74.1 84 0.0018 30.0 25.3 105 400-504 169-285 (335)
325 KOG3678 SARM protein (with ste 74.0 94 0.002 30.6 15.9 141 89-229 183-336 (832)
326 smart00185 ARM Armadillo/beta- 74.0 4.9 0.00011 23.9 3.1 28 513-540 13-40 (41)
327 PF14868 DUF4487: Domain of un 73.9 1.1E+02 0.0025 31.5 25.2 87 494-581 462-553 (559)
328 smart00185 ARM Armadillo/beta- 72.2 7.4 0.00016 23.1 3.6 28 435-462 13-40 (41)
329 PF08767 CRM1_C: CRM1 C termin 71.0 97 0.0021 29.5 26.6 135 293-428 42-198 (319)
330 KOG3036 Protein involved in ce 70.6 79 0.0017 28.3 10.6 71 122-192 121-197 (293)
331 cd00197 VHS_ENTH_ANTH VHS, ENT 70.4 48 0.001 25.7 10.3 38 432-469 35-72 (115)
332 KOG2038 CAATT-binding transcri 69.9 1.5E+02 0.0034 31.3 27.1 71 238-310 303-373 (988)
333 KOG1988 Uncharacterized conser 69.6 58 0.0013 34.7 10.9 110 436-545 26-135 (970)
334 PF14222 MOR2-PAG1_N: Cell mor 69.6 1.4E+02 0.0031 30.9 27.2 297 98-404 143-516 (552)
335 PF03130 HEAT_PBS: PBS lyase H 68.9 3.7 8E-05 22.1 1.5 12 490-501 2-13 (27)
336 cd03572 ENTH_epsin_related ENT 68.6 56 0.0012 25.7 10.7 38 432-469 36-73 (122)
337 PF07539 DRIM: Down-regulated 67.8 28 0.00061 28.2 6.9 81 85-172 16-97 (141)
338 PF14668 RICTOR_V: Rapamycin-i 67.7 25 0.00055 24.6 5.7 52 491-542 5-59 (73)
339 PF04388 Hamartin: Hamartin pr 66.3 1.3E+02 0.0029 32.0 13.3 150 11-173 6-162 (668)
340 PF14225 MOR2-PAG1_C: Cell mor 65.9 1.1E+02 0.0024 28.1 17.8 135 435-582 112-253 (262)
341 PF09324 DUF1981: Domain of un 65.8 44 0.00096 24.3 7.0 52 485-536 30-83 (86)
342 KOG1087 Cytosolic sorting prot 65.7 77 0.0017 31.7 10.6 101 439-545 10-116 (470)
343 KOG2199 Signal transducing ada 65.0 82 0.0018 30.2 10.0 99 403-507 20-123 (462)
344 cd07064 AlkD_like_1 A new stru 63.4 1.1E+02 0.0023 27.0 16.8 64 436-503 117-180 (208)
345 COG5110 RPN1 26S proteasome re 62.6 1.8E+02 0.0039 29.5 32.4 83 456-542 624-706 (881)
346 PF06371 Drf_GBD: Diaphanous G 60.7 66 0.0014 27.5 8.6 56 485-540 128-186 (187)
347 PF11707 Npa1: Ribosome 60S bi 60.3 1.6E+02 0.0035 28.2 15.7 144 436-579 58-236 (330)
348 KOG4646 Uncharacterized conser 60.0 89 0.0019 25.0 9.2 106 474-579 59-169 (173)
349 cd07064 AlkD_like_1 A new stru 59.0 1.3E+02 0.0027 26.5 16.1 130 164-308 47-180 (208)
350 PF12726 SEN1_N: SEN1 N termin 58.8 2.7E+02 0.0059 30.3 33.6 136 57-195 92-246 (727)
351 PF14668 RICTOR_V: Rapamycin-i 58.8 35 0.00076 23.9 5.1 54 529-582 4-60 (73)
352 cd06561 AlkD_like A new struct 58.6 1.2E+02 0.0026 26.2 17.1 64 281-347 108-171 (197)
353 PF14631 FancD2: Fanconi anaem 56.4 4.1E+02 0.0088 31.5 30.0 144 434-579 435-583 (1426)
354 PF06371 Drf_GBD: Diaphanous G 54.7 1E+02 0.0022 26.4 8.7 56 446-501 128-186 (187)
355 KOG3961 Uncharacterized conser 54.4 84 0.0018 27.3 7.5 50 510-559 153-207 (262)
356 KOG4199 Uncharacterized conser 53.7 2E+02 0.0044 27.2 26.0 144 436-579 285-443 (461)
357 KOG3961 Uncharacterized conser 52.4 32 0.00069 29.7 4.8 68 278-345 114-183 (262)
358 PF14222 MOR2-PAG1_N: Cell mor 52.1 3E+02 0.0064 28.7 33.0 54 472-526 470-524 (552)
359 PF11841 DUF3361: Domain of un 51.9 1.4E+02 0.003 24.8 9.8 110 469-578 7-129 (160)
360 PF06685 DUF1186: Protein of u 46.4 2.3E+02 0.005 25.7 16.0 78 320-405 114-195 (249)
361 PF04821 TIMELESS: Timeless pr 45.7 97 0.0021 28.5 7.4 64 4-75 8-71 (266)
362 PF08324 PUL: PUL domain; Int 45.4 2.5E+02 0.0053 25.8 13.8 97 483-579 120-230 (268)
363 PF08620 RPAP1_C: RPAP1-like, 44.1 46 0.00099 23.3 3.8 34 8-41 38-71 (73)
364 PF04510 DUF577: Family of unk 44.0 2E+02 0.0042 24.3 8.8 84 435-524 4-96 (174)
365 PF12333 Ipi1_N: Rix1 complex 44.0 1.1E+02 0.0024 23.1 6.3 52 353-404 8-62 (102)
366 PF12333 Ipi1_N: Rix1 complex 43.5 78 0.0017 24.0 5.4 54 471-524 9-65 (102)
367 PF12783 Sec7_N: Guanine nucle 42.6 2E+02 0.0044 24.1 11.0 70 433-502 72-146 (168)
368 KOG3911 Nucleolar protein NOP5 42.3 2.8E+02 0.0061 26.1 9.3 71 12-82 10-87 (378)
369 KOG1086 Cytosolic sorting prot 42.2 2.1E+02 0.0045 27.9 8.8 63 407-469 17-80 (594)
370 COG5231 VMA13 Vacuolar H+-ATPa 41.8 3E+02 0.0066 25.9 20.3 69 511-579 355-427 (432)
371 PF12612 TFCD_C: Tubulin foldi 41.8 2.3E+02 0.005 24.5 11.4 108 84-192 5-116 (193)
372 PF09268 Clathrin-link: Clathr 41.7 29 0.00064 18.1 1.9 20 473-492 3-22 (24)
373 KOG1932 TATA binding protein a 39.6 4.5E+02 0.0098 29.6 11.7 102 242-345 677-802 (1180)
374 KOG4646 Uncharacterized conser 39.0 1.2E+02 0.0027 24.3 5.8 68 435-502 59-128 (173)
375 KOG3687 Tuberin - Rap/ran-GTPa 37.9 6.1E+02 0.013 28.2 20.1 20 524-543 485-504 (1697)
376 PF11935 DUF3453: Domain of un 36.8 3.2E+02 0.0069 24.7 17.9 48 356-405 114-163 (239)
377 PF10304 DUF2411: Domain of un 35.8 84 0.0018 18.4 3.5 28 552-579 6-34 (36)
378 cd07920 Pumilio Pumilio-family 35.6 3.9E+02 0.0084 25.3 25.3 9 516-524 269-277 (322)
379 PF11919 DUF3437: Domain of un 35.1 1.6E+02 0.0035 21.7 5.7 56 488-544 4-61 (90)
380 COG5110 RPN1 26S proteasome re 34.5 5.2E+02 0.011 26.5 21.2 248 84-347 448-706 (881)
381 PF11919 DUF3437: Domain of un 34.0 1.6E+02 0.0035 21.7 5.5 29 549-578 28-56 (90)
382 COG5209 RCD1 Uncharacterized p 33.9 3.4E+02 0.0073 24.1 8.1 81 125-208 145-231 (315)
383 KOG1837 Uncharacterized conser 33.5 8.7E+02 0.019 28.7 29.6 90 492-583 1523-1614(1621)
384 PF14663 RasGEF_N_2: Rapamycin 32.7 1E+02 0.0022 23.9 4.7 33 470-502 5-37 (115)
385 PF14228 MOR2-PAG1_mid: Cell m 32.5 8.3E+02 0.018 28.2 31.9 395 47-459 195-692 (1120)
386 cd03562 CID CID (CTD-Interacti 32.5 2.3E+02 0.005 21.8 7.5 85 452-538 18-105 (114)
387 KOG1789 Endocytosis protein RM 31.6 8.1E+02 0.018 27.8 23.5 151 217-368 1742-1910(2235)
388 COG5330 Uncharacterized protei 30.1 2.6E+02 0.0056 26.9 7.5 61 283-343 12-73 (364)
389 COG4912 Predicted DNA alkylati 30.0 1.6E+02 0.0034 25.9 5.7 68 474-541 115-183 (222)
390 COG5330 Uncharacterized protei 29.5 2.4E+02 0.0052 27.1 7.2 66 474-539 8-74 (364)
391 PF14663 RasGEF_N_2: Rapamycin 28.9 1.3E+02 0.0029 23.3 4.8 34 431-464 5-38 (115)
392 KOG0905 Phosphoinositide 3-kin 28.8 9.4E+02 0.02 27.6 13.2 86 368-467 902-991 (1639)
393 cd05392 RasGAP_Neurofibromin_l 27.8 5.4E+02 0.012 24.5 9.8 31 415-445 74-104 (323)
394 PF09450 DUF2019: Domain of un 27.5 1.1E+02 0.0025 23.2 3.9 24 361-384 52-75 (106)
395 PF04078 Rcd1: Cell differenti 27.4 4.8E+02 0.01 23.8 18.4 96 447-542 109-219 (262)
396 KOG1988 Uncharacterized conser 27.1 8.6E+02 0.019 26.6 18.4 91 300-390 46-136 (970)
397 PF14676 FANCI_S2: FANCI solen 26.5 3.8E+02 0.0082 22.3 8.4 101 472-575 54-156 (158)
398 PF01417 ENTH: ENTH domain; I 26.3 3.2E+02 0.007 21.5 9.3 37 394-430 38-77 (125)
399 KOG0929 Guanine nucleotide exc 25.3 1.2E+03 0.026 27.7 14.9 241 43-288 1032-1321(1514)
400 PHA02861 uncharacterized prote 25.0 3.7E+02 0.008 21.6 8.8 116 56-177 12-134 (149)
401 COG1698 Uncharacterized protei 24.6 2.8E+02 0.0062 20.2 7.8 29 201-229 16-48 (93)
402 COG1698 Uncharacterized protei 23.9 2.9E+02 0.0064 20.2 8.0 54 511-564 16-72 (93)
403 KOG1222 Kinesin associated pro 23.8 7.6E+02 0.017 24.9 30.6 353 102-463 279-663 (791)
404 KOG1877 Putative transmembrane 22.9 1E+03 0.022 26.1 12.9 383 146-537 1-402 (819)
405 cd05130 RasGAP_Neurofibromin N 22.1 7.1E+02 0.015 23.9 9.5 34 415-448 79-112 (329)
406 PF08324 PUL: PUL domain; Int 21.9 6.2E+02 0.013 23.2 10.0 100 442-541 118-231 (268)
407 PF12031 DUF3518: Domain of un 21.8 1.8E+02 0.0039 26.1 4.6 93 488-580 81-202 (257)
408 PF12243 CTK3: CTD kinase subu 21.7 4.4E+02 0.0096 21.4 9.0 119 439-564 13-139 (139)
409 PF14631 FancD2: Fanconi anaem 21.7 1.4E+03 0.031 27.3 29.0 69 395-464 435-503 (1426)
410 KOG2153 Protein involved in th 21.7 9.6E+02 0.021 25.3 30.8 369 157-535 204-653 (704)
411 PF04388 Hamartin: Hamartin pr 21.7 1E+03 0.022 25.6 13.0 142 94-248 12-161 (668)
412 PF08158 NUC130_3NT: NUC130/3N 21.1 1.6E+02 0.0034 19.1 3.1 31 236-266 16-46 (52)
413 PF11791 Aconitase_B_N: Aconit 21.0 4.2E+02 0.0091 21.8 6.1 106 430-544 18-126 (154)
414 KOG2753 Uncharacterized conser 20.8 7.4E+02 0.016 23.6 14.9 84 93-194 54-137 (378)
415 PF14961 BROMI: Broad-minded p 20.6 3.8E+02 0.0082 30.5 7.5 69 126-194 163-233 (1296)
416 PF12783 Sec7_N: Guanine nucle 20.5 5.1E+02 0.011 21.6 9.8 71 472-542 72-147 (168)
417 PF14123 DUF4290: Domain of un 20.3 5.4E+02 0.012 21.8 10.3 113 81-193 13-141 (176)
No 1
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=4.9e-50 Score=397.35 Aligned_cols=577 Identities=54% Similarity=0.825 Sum_probs=542.7
Q ss_pred CCCcccHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhcccccccccCCchHHHHHHHHHHhccccccCCcchH
Q 007918 5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHA 84 (585)
Q Consensus 5 ~~~~~~i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~ 84 (585)
++++|||..+++.++..|-..|..+.+.+++++..+|.+.++..++|++.+..+++.+|..+.+..+|.+..++|++++.
T Consensus 78 ~~~~~~ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~~~~ 157 (759)
T KOG0211|consen 78 EDSLYPIAVLIDELSNTDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGPEYA 157 (759)
T ss_pred ccccccHHHHhhccCchhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhccchhHHHHHHHHHhcccchhccchhHH
Confidence 34799999999999999999999999999999999999999999999999955999999999999999999999999999
Q ss_pred HhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCC-hHHHHH
Q 007918 85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP-DILKTE 163 (585)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~-~~~~~~ 163 (585)
+.+++.++.+..+++..+|+++++++..++...+.+....++.|++.++..+++...|..+|.+++..+...+ +..+.+
T Consensus 158 ~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~e 237 (759)
T KOG0211|consen 158 HMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRE 237 (759)
T ss_pred HHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHH
Confidence 9999999999999999999999999999999999988899999999999999888899999999999999998 568999
Q ss_pred HHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC--hhHHHHHHHHHHHHhhccCch-hhhhhh
Q 007918 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEPQ-DCVAHI 240 (585)
Q Consensus 164 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~~-~~~~~~ 240 (585)
+.+.+.++++|.++.||.++++-++.+++.++.......+.|.+.++..| +.||..|...+..+.+.+..+ ...+.+
T Consensus 238 lr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~ 317 (759)
T KOG0211|consen 238 LRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSL 317 (759)
T ss_pred HHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhh
Confidence 99999999999999999999999999999998888889999999999988 779999999999999998877 778889
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhC----HHHHHH
Q 007918 241 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN----PELAIQ 316 (585)
Q Consensus 241 ~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~ 316 (585)
.+.+.+..+|.+|++|..+...+..+...+|.+.....+.+.+..+++|..+++|.+.......++.... .....+
T Consensus 318 ~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~ 397 (759)
T KOG0211|consen 318 TESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDS 397 (759)
T ss_pred hHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchh
Confidence 9999999999999999999999999999999987778899999999999999999999999999988877 334456
Q ss_pred hhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHH---HHhHHhhhhhchhHHh
Q 007918 317 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNII---SKLDQVNQVIGIDLLS 393 (585)
Q Consensus 317 ~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~---~~l~~l~~~~~~~~~~ 393 (585)
.++|.+..+..|.+..||.+.+..+..+...+|.+...+.+.|.+...++|..+.||.+.. ..+.......|....+
T Consensus 398 ~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s 477 (759)
T KOG0211|consen 398 SILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVS 477 (759)
T ss_pred hhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhh
Confidence 7889999999999999999999999999999998888899999999999999999999999 4555555667888888
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhh
Q 007918 394 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQH 473 (585)
Q Consensus 394 ~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 473 (585)
+..+|.+..+..|.+|++|.++++.+..++...|..++.+.+.+.+..++.|...++|.+|...+..++..+|.+|....
T Consensus 478 ~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~ 557 (759)
T KOG0211|consen 478 NSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLE 557 (759)
T ss_pred hhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred hHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHH
Q 007918 474 ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIR 553 (585)
Q Consensus 474 ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~ 553 (585)
++|.++.+..+++|..|.+.+.++..+++.+|.+.+.+.++|.+..+.+|+.++||.++++.+..+...+..+...+.+.
T Consensus 558 ~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~ 637 (759)
T KOG0211|consen 558 EIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVL 637 (759)
T ss_pred hhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 007918 554 PCLVELTEDPDVDVRFFATQAIQSIDHV 581 (585)
Q Consensus 554 ~~l~~l~~D~~~~Vr~~a~~al~~l~~~ 581 (585)
|.+..+..|++.+||+.|..|.+.+.-.
T Consensus 638 pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 638 PLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred HHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 9999999999999999999999987654
No 2
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=7.3e-32 Score=268.40 Aligned_cols=523 Identities=20% Similarity=0.262 Sum_probs=461.1
Q ss_pred hHHHHHHHHHHhccccccCCcchHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCcc
Q 007918 61 DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFT 140 (585)
Q Consensus 61 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~ 140 (585)
..-|......+.+++-..|.+-....++|.+.... +.+..|+..+...++.+....+...+...++|.+..+..+....
T Consensus 96 i~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~~~eet~ 174 (759)
T KOG0211|consen 96 IQLRLNSGRKLSNLALALGVERTRLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLATVEETG 174 (759)
T ss_pred hhhhhhhhccccchhhhcccchhhhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccchhHHHHhhHHHHhhhHHHHHH
Confidence 34455566666666555554434566888888887 88999999999999999999888888889999999999998889
Q ss_pred chhhHHhhhHhhcCCCChH-HHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC--hhHH
Q 007918 141 ARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD--DSVR 217 (585)
Q Consensus 141 ~r~~a~~~l~~~~~~~~~~-~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d--~~vr 217 (585)
+|..+...+..++...+.+ .+..+.+++..+..++....|..++..++..+....+..+...+.|...++++| +.||
T Consensus 175 vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr 254 (759)
T KOG0211|consen 175 VREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVR 254 (759)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhH
Confidence 9999999888887777664 568888998888888666678888888888888777778899999999999999 6799
Q ss_pred HHHHHHHHHHhhccCchhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCc-ccccchHHHHHHhccCChHHHHH
Q 007918 218 LLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLLRDNEAEVRI 296 (585)
Q Consensus 218 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~ll~d~~~~vr~ 296 (585)
..+...++.++...+.+.....+.|.+.++..|+...||..+...+..+...+..+ ...+.+.+.+++..+|.+|.+|.
T Consensus 255 ~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~ 334 (759)
T KOG0211|consen 255 RAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSY 334 (759)
T ss_pred HHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHH
Confidence 99999999999999988888899999999999999999999999999999988876 55567899999999999999999
Q ss_pred HHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCH----HHHHHhHHHHHHHhhcCCChHH
Q 007918 297 AAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----DATIEQLLPIFLSLLKDEFPDV 372 (585)
Q Consensus 297 ~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~v 372 (585)
........+...+|++.......+.+..+++|..|.+|.+.+.-...++..... ....+.++|.+..+..|.+..|
T Consensus 335 ~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~v 414 (759)
T KOG0211|consen 335 MVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHV 414 (759)
T ss_pred HHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchH
Confidence 999999999999988655566778888999999999999999999988877763 3345677899999999999999
Q ss_pred HHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHH---HHhhChhhHHHHHHHHHHHHccCCchH
Q 007918 373 RLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL---ASQLGVGFFDDKLGALCMQWLQDKVYS 449 (585)
Q Consensus 373 r~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l---~~~~~~~~~~~~l~~~l~~~l~d~~~~ 449 (585)
|...+.....+...+|.+.-.+.++|.+...++|....+|...++.+..+ ....|.....+..+|.+..+..|..|+
T Consensus 415 r~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wR 494 (759)
T KOG0211|consen 415 RSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWR 494 (759)
T ss_pred HHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHH
Confidence 99999999999999998877788999999999999999999999655443 344567777888999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHH
Q 007918 450 IRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIK 529 (585)
Q Consensus 450 vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR 529 (585)
+|.+....+..++...|.+++.+.+-+.+...+.|..+.+|.+|...+..++..+|.++....+.|.++....+++..+|
T Consensus 495 vr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R 574 (759)
T KOG0211|consen 495 VRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVR 574 (759)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchh
Confidence 99999999999999999888888888889999999999999999999999999999888899999999999998899999
Q ss_pred HHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhcC
Q 007918 530 FNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS 584 (585)
Q Consensus 530 ~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~~l~~ 584 (585)
.+.+.++..++..+|.+.+.+.++|.+..+..|++++||.++++.+..+.+.|..
T Consensus 575 ~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~ 629 (759)
T KOG0211|consen 575 MTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE 629 (759)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch
Confidence 9999999999999999999999999999999999999999999999999988753
No 3
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-28 Score=244.74 Aligned_cols=542 Identities=17% Similarity=0.226 Sum_probs=416.7
Q ss_pred ccHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhccccccc--ccCCchHHHHHHHHHHhcccc----ccCCcc
Q 007918 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE--NNDDDDEVLLAMAEELGVFIP----YVGGVE 82 (585)
Q Consensus 9 ~~i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~--~~d~~~~vr~~~~~~l~~l~~----~~~~~~ 82 (585)
.|+..|+..+.++|.++|..|-+.+..+...- .++|.|.+ ....+|++|..++-.+.++.. .+....
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~-------~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~ 76 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTE-------PLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEV 76 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhccc-------chHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 36888999999999999999999888765322 27788877 345689999888776665533 222111
Q ss_pred hHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChH---
Q 007918 83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--- 159 (585)
Q Consensus 83 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--- 159 (585)
.....-.+|..+...+.+.||++.+..++.+++..-++ .++.+++++.+-.+++++..|..|..++..+...++..
T Consensus 77 ~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~ 155 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQP 155 (1075)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccch
Confidence 22233344556677899999999999999999998887 88999999999999999999999999998887777663
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhc-ccchHHH---HHH----HHHHhccC--hhHHHHHHHHHHHHhh
Q 007918 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE-PAHLKTD---IMS----IFEDLTQD--DSVRLLAVEGCAALGK 229 (585)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~---l~~----~l~~l~~d--~~vr~~a~~~l~~l~~ 229 (585)
+.+.+.+++.+.+.|++..||..++++++.++.... +...++. ++| .+....++ +..-..+.+.+..+++
T Consensus 156 ~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e 235 (1075)
T KOG2171|consen 156 HLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLE 235 (1075)
T ss_pred hHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHh
Confidence 778999999999999988899999999999998874 2222222 333 33333333 3367788888888888
Q ss_pred ccCc--hhhhhhhHHHHHHhccCC--ChHHHHHHHHHHHHHHHHhCCc-----ccccchHHHHHHhccCC----------
Q 007918 230 LLEP--QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGPE-----PTRMDLVPAYVRLLRDN---------- 290 (585)
Q Consensus 230 ~~~~--~~~~~~~~~~l~~~~~d~--~~~vR~~~~~~l~~l~~~~~~~-----~~~~~l~~~l~~ll~d~---------- 290 (585)
..++ ......++.+..+...++ +..+|..+++.+..+.+..+.. .....+++.+...+.|.
T Consensus 236 ~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d 315 (1075)
T KOG2171|consen 236 SEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNED 315 (1075)
T ss_pred hchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccc
Confidence 7775 445566666666666654 6789999999999988874321 12235666666655311
Q ss_pred -----h-HHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHH--HHHHhHHHHHH
Q 007918 291 -----E-AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFL 362 (585)
Q Consensus 291 -----~-~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~ 362 (585)
+ ..--..|.+++..++..+|++.+.+.+++.+..++.+++|+-|.++..+|+.+++..++. ...+.++|.+.
T Consensus 316 ~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl 395 (1075)
T KOG2171|consen 316 DLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVL 395 (1075)
T ss_pred ccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 1 124567888999999999998888899999999999999999999999999999877642 35788999999
Q ss_pred HhhcCCChHHHHHHHHHhHHhhhhhchhH---HhhhHHHHHHHHhcCC-ChHHHHHHHHHhHHHHHhhChhhHHHHH---
Q 007918 363 SLLKDEFPDVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGFFDDKL--- 435 (585)
Q Consensus 363 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~ll~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~~~~~~~l--- 435 (585)
++++|+++.||.+|+.+++.+...+.++. ..+.+.|.+...+.+. +.++...+..++-.+.+.+.++.+.+++
T Consensus 396 ~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~l 475 (1075)
T KOG2171|consen 396 NGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGL 475 (1075)
T ss_pred hhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 99999999999999999999999988653 3356677787777764 6799999999999888877766555443
Q ss_pred HH-HHHHHccCCchHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhcCc----chHHHHHHHHHHHHhhhhcChHH
Q 007918 436 GA-LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNP----HYLYRMTILRAISLLAPVMGSEI 508 (585)
Q Consensus 436 ~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~~~----~~~~R~~a~~~l~~l~~~~~~~~ 508 (585)
+. .+.-+.+.+...||+.++.+++.++...+..+ +.+.++|.+.+.+.+. ....|-..+++++-++...|.+.
T Consensus 476 m~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~ 555 (1075)
T KOG2171|consen 476 MEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEK 555 (1075)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhh
Confidence 33 34446678899999999999999999877765 3578899888876543 36688888999999999999776
Q ss_pred H---HhcHHHHHHhh---cCCCCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHH
Q 007918 509 T---CSRLLPVVINA---SKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVE 558 (585)
Q Consensus 509 ~---~~~i~~~l~~~---l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~ 558 (585)
| .+.++..+..+ -.+.+...|.-.....+.++..+++. .+.+.++|.+.+
T Consensus 556 F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ 613 (1075)
T KOG2171|consen 556 FLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLK 613 (1075)
T ss_pred hhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHH
Confidence 5 45566666666 44557778888999999999998875 566777777665
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=7.9e-27 Score=234.14 Aligned_cols=570 Identities=17% Similarity=0.190 Sum_probs=423.6
Q ss_pred HHHHHh-cChhHHHHHHHhhhHHHHHHhhChhhhhhhccccccc-ccCCchHHHHHHHHHHhccccccCCcc--hHHhch
Q 007918 13 VLIDEL-KNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVE--HAHVLL 88 (585)
Q Consensus 13 ~l~~~l-~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~ 88 (585)
.|+..+ +.+.+.+|..-...++++++...++ .|.+++++|.+ .++.++..|..+...|..+...+|... +...+.
T Consensus 83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~ 161 (1075)
T KOG2171|consen 83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLL 161 (1075)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHH
Confidence 344443 4557889999999999999998877 89999999999 677899999999999888877766432 456788
Q ss_pred HHHhhhhhchhhHHHHHHHHHHHHHHhhcC--hhh--HHhhHHHHHHH----hhcCcCccchhhHHhhhHhhcCCCCh--
Q 007918 89 PPLETLCTVEETCVRDKAVESLCRIGSQMR--ESD--LVDWYIPLVKR----LAAGEWFTARVSACGLFHIAYPSAPD-- 158 (585)
Q Consensus 89 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~--~~~--~~~~l~~~l~~----l~~~~~~~~r~~a~~~l~~~~~~~~~-- 158 (585)
+++.+.++|+...||..|+++++.++..++ +.. ....++|-+.+ ..++.+...-..+...+..+....+.
T Consensus 162 ~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l 241 (1075)
T KOG2171|consen 162 RLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL 241 (1075)
T ss_pred HHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH
Confidence 999999999888899999999999999885 222 22335554433 33444444455566666666666555
Q ss_pred -HHHHHHHHHHHhhcCCC--chHHHHHHHHhHHHHHhhhcc-----cchHHHHHHHHHHhccC---h-------------
Q 007918 159 -ILKTELRSIYTQLCQDD--MPMVRRSAASNLGKFAATVEP-----AHLKTDIMSIFEDLTQD---D------------- 214 (585)
Q Consensus 159 -~~~~~l~~~l~~l~~d~--~~~vr~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~l~~d---~------------- 214 (585)
.+...++.+......++ +..+|..|.+.+..+++..+. ..+...+.+.+..++.+ |
T Consensus 242 ~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~ 321 (1075)
T KOG2171|consen 242 RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDD 321 (1075)
T ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccccc
Confidence 46677777777777654 678999999999999887321 22556666666665433 1
Q ss_pred --hHHHHHHHHHHHHhhccCchhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCccc--ccchHHHHHHhccCC
Q 007918 215 --SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDN 290 (585)
Q Consensus 215 --~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~ll~d~ 290 (585)
.-...|.+++..++-.++++...+.+++.+..++++.+|.-|++++.+|+.++++.++... .+++++.....++|+
T Consensus 322 ~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dp 401 (1075)
T KOG2171|consen 322 EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDP 401 (1075)
T ss_pred ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC
Confidence 1567899999999999999999999999999999999999999999999999998776332 347899999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhCHH---HHHHhhHHHHHHhccCC-cHHHHHHHHHHHHhhchhhCHHH---HHHhHHH-HHH
Q 007918 291 EAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKDA---TIEQLLP-IFL 362 (585)
Q Consensus 291 ~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~-~l~ 362 (585)
++.||.+|+.++++++..+.++ .+.+.+.|.+...+.+. +++|...++.++.++.....++. +.+.++. .+.
T Consensus 402 hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~ 481 (1075)
T KOG2171|consen 402 HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLL 481 (1075)
T ss_pred CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998877 23355666777766654 57999999999999988877654 3444554 445
Q ss_pred HhhcCCChHHHHHHHHHhHHhhhhhchh--HHhhhHHHHHHHHhcCC----ChHHHHHHHHHhHHHHHhhChhhHHHH--
Q 007918 363 SLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDR----HWRVRLAIIEYIPLLASQLGVGFFDDK-- 434 (585)
Q Consensus 363 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~~~~~----~~~~r~~~~~~l~~l~~~~~~~~~~~~-- 434 (585)
.+++.+.+.|++.++.+++.++...+.. .+.+.++|.+...+.+. ....|...+++++.+...+|++.|.+.
T Consensus 482 ~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~ 561 (1075)
T KOG2171|consen 482 LLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAE 561 (1075)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHH
Confidence 5667788999999999999999887754 34578899998877543 356888999999999999998877654
Q ss_pred -HHHHHHHH---ccCCchHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhc--------C----------------
Q 007918 435 -LGALCMQW---LQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMIN--------N---------------- 484 (585)
Q Consensus 435 -l~~~l~~~---l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~--------~---------------- 484 (585)
++..+..+ ..|.+...|...+..++.+|+.+|+++ +.+.++|.++...+ |
T Consensus 562 eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~ 641 (1075)
T KOG2171|consen 562 ELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVV 641 (1075)
T ss_pred HHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhh
Confidence 44445554 456677899999999999999999986 45667776655422 1
Q ss_pred ----c-c-------hHHHHHHHHHHHHhhhhcChHH--HHhcHHH-HHHhhcCCCCchHHHHHHHHHHHHHhhhc-----
Q 007918 485 ----P-H-------YLYRMTILRAISLLAPVMGSEI--TCSRLLP-VVINASKDRVPNIKFNVAKVLQSLIPIVD----- 544 (585)
Q Consensus 485 ----~-~-------~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~-~l~~~l~d~~~~vR~~~~~~l~~l~~~~~----- 544 (585)
. . ..-+..|..+++.++...+..+ +.+..++ .+..+.-.....||.+++.++..++....
T Consensus 642 ~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~ 721 (1075)
T KOG2171|consen 642 ELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQG 721 (1075)
T ss_pred ccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0 1 1235577888888877555432 3444444 33333345577899999999999876542
Q ss_pred -hH---HHHhhHHHHHHH-hcCCCCccHHHHHHHHHHHHHHhhc
Q 007918 545 -QS---MVEKTIRPCLVE-LTEDPDVDVRFFATQAIQSIDHVMM 583 (585)
Q Consensus 545 -~~---~~~~~~~~~l~~-l~~D~~~~Vr~~a~~al~~l~~~l~ 583 (585)
+. ..-..+.+.+.. +...++.+|-.....++..+-+.++
T Consensus 722 ~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G 765 (1075)
T KOG2171|consen 722 GPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMG 765 (1075)
T ss_pred ChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcC
Confidence 22 223445555555 6678888887777777776666544
No 5
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.2e-28 Score=231.15 Aligned_cols=567 Identities=20% Similarity=0.212 Sum_probs=388.6
Q ss_pred CCcccHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhcccccccccCCchH-----------------------
Q 007918 6 EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDE----------------------- 62 (585)
Q Consensus 6 ~~~~~i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~----------------------- 62 (585)
+-|-.+..+++.-.|+|+.+|..+...+.++-.. |+ ..++|+-.|....+.+..
T Consensus 10 ~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~--pd-fnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~ 86 (885)
T KOG2023|consen 10 QGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLF--PD-FNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSE 86 (885)
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcc--cc-hhceeeEEEecccccchhHHHHhhhhHhccccccccCCChH
Confidence 3344577788888899999999999888776431 12 223444333333332233
Q ss_pred -------------------HHHHHHHHHhccccccCCcchHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChh---
Q 007918 63 -------------------VLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--- 120 (585)
Q Consensus 63 -------------------vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--- 120 (585)
+|..++..+..++.. ++-..++.++|.|..++.+++....+.|..+|..+++.....
T Consensus 87 ~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~-~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds 165 (885)
T KOG2023|consen 87 VLDYIKSECLHGLGDASPLIRATVGIVITTIAST-GGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDS 165 (885)
T ss_pred HHHHHHHHHHhhccCchHHHHhhhhheeeeeecc-cccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhh
Confidence 333222222232221 122356889999999999999999999999999999866541
Q ss_pred ----hHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChH---HHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhh
Q 007918 121 ----DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAAT 193 (585)
Q Consensus 121 ----~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 193 (585)
.-.+.++|.+.++.+.+++..|..|..++..++..-+.. +.+..++.+..+.+|++++||+..+.++.-+.+.
T Consensus 166 ~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 166 DVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred hcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence 223568899999999999999999988887776655543 6788899999999999999999999999998876
Q ss_pred hcccchHHHH---HHHHHHhccC--hhHHHHHHHHHHHHhhccCc----hhhhhhhHHHHHH----------hcc-----
Q 007918 194 VEPAHLKTDI---MSIFEDLTQD--DSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVN----------FSQ----- 249 (585)
Q Consensus 194 ~~~~~~~~~l---~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~----------~~~----- 249 (585)
- ++...+.+ .....+..+| ++|...|++.+.++++.--. ..+.+.++|.+.. ++.
T Consensus 246 r-~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD 324 (885)
T KOG2023|consen 246 R-PDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEED 324 (885)
T ss_pred c-HHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCcccc
Confidence 5 34444444 3444445566 55999999999998875322 2344455555432 111
Q ss_pred -------------------------------C----------CChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcc
Q 007918 250 -------------------------------D----------KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR 288 (585)
Q Consensus 250 -------------------------------d----------~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~ 288 (585)
| .+|..|+..+.++..++..+|++.. ..++|.+.+.+.
T Consensus 325 ~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL-~~l~PlLk~~L~ 403 (885)
T KOG2023|consen 325 ESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELL-PILLPLLKEHLS 403 (885)
T ss_pred ccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHH-HHHHHHHHHHcC
Confidence 1 1399999999999999999887663 468888888888
Q ss_pred CChHHHHHHHHHHHHHHHHhhCHH--HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHH---HHHhHHHHHHH
Q 007918 289 DNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TIEQLLPIFLS 363 (585)
Q Consensus 289 d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~ 363 (585)
.++|.+|++++-++|++++..... .+.+.++|++..++.|+.+-||...|..++++++..-.+. +...++.-+..
T Consensus 404 ~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~ 483 (885)
T KOG2023|consen 404 SEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLR 483 (885)
T ss_pred cchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHH
Confidence 899999999999999999976544 3457899999999999999999999999999987664333 33333444455
Q ss_pred hhcCCChHHHHHHHHHhHHhhhhhchhHH--hhhHHHHHHHHh---cCCChHHHHHHHHHhHHHHHhhCh----hhHHHH
Q 007918 364 LLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELA---EDRHWRVRLAIIEYIPLLASQLGV----GFFDDK 434 (585)
Q Consensus 364 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~ll~~l~~~~---~~~~~~~r~~~~~~l~~l~~~~~~----~~~~~~ 434 (585)
.+-|.+..|+++|++++..+-+..|.+-. .+.++..+...+ +.+|-.+ ..++++.++..+|. ..+-+.
T Consensus 484 ~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlI---LYDAIgtlAdsvg~~Ln~~~Yiqi 560 (885)
T KOG2023|consen 484 RLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLI---LYDAIGTLADSVGHALNKPAYIQI 560 (885)
T ss_pred HHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceeh---HHHHHHHHHHHHHHhcCcHHHHHH
Confidence 56699999999999999999887776432 223333333222 2233333 44566777776653 334455
Q ss_pred HHHHHHH---HccCCchHHHHHHHHHHHHHHHHhCHHHH--HhhhHHH-----------HHhhhcCc-----chHHHHHH
Q 007918 435 LGALCMQ---WLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQ-----------VLEMINNP-----HYLYRMTI 493 (585)
Q Consensus 435 l~~~l~~---~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~ll~~-----------l~~~l~~~-----~~~~R~~a 493 (585)
++|.++. .+.|++.++ --.++++..++..+|..+. .+.+... +.....++ +...-..+
T Consensus 561 LmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~s 639 (885)
T KOG2023|consen 561 LMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVS 639 (885)
T ss_pred hccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEe
Confidence 6666544 467777665 3467788888888776531 1222221 11112222 33444578
Q ss_pred HHHHHHhhhhcChHH----HHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCCCccH
Q 007918 494 LRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDV 567 (585)
Q Consensus 494 ~~~l~~l~~~~~~~~----~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~l~~D~~~~V 567 (585)
+..+..+++.+|... ....++..+..++.|+.|+||+.+...+|.+.....+. .....++|.+..=+.-..-.|
T Consensus 640 LDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv 719 (885)
T KOG2023|consen 640 LDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISV 719 (885)
T ss_pred HHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchH
Confidence 888999988777532 35678999999999999999999999999998775321 233445555554233334558
Q ss_pred HHHHHHHHHHHHHhh
Q 007918 568 RFFATQAIQSIDHVM 582 (585)
Q Consensus 568 r~~a~~al~~l~~~l 582 (585)
-.+|.+|++.++--+
T Consensus 720 ~nNA~WAiGeia~k~ 734 (885)
T KOG2023|consen 720 CNNAIWAIGEIALKM 734 (885)
T ss_pred HHHHHHHHHHHHHHh
Confidence 899999999887543
No 6
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.97 E-value=3e-27 Score=224.25 Aligned_cols=556 Identities=20% Similarity=0.285 Sum_probs=412.1
Q ss_pred cHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhccccccc-ccCCch-H-HHHHHHHHHhccccccCCcchHHh
Q 007918 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDD-E-VLLAMAEELGVFIPYVGGVEHAHV 86 (585)
Q Consensus 10 ~i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~-~-vr~~~~~~l~~l~~~~~~~~~~~~ 86 (585)
-|..++-.+|++.+-.|..+++.|..-+..+|.....++++|.+.. ..++.. . +.+.+-+.|.++-..+. .|.+.
T Consensus 364 ~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvr--pYVhk 441 (1172)
T KOG0213|consen 364 KIMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVR--PYVHK 441 (1172)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccch--hceee
Confidence 3778888999999999999999999999999999999999999998 444332 2 22334444444433221 23333
Q ss_pred chHHHhhhhhchh-----------------------------------hHHHHHHHHHHHHHHhhcChhhHHhhHHHHHH
Q 007918 87 LLPPLETLCTVEE-----------------------------------TCVRDKAVESLCRIGSQMRESDLVDWYIPLVK 131 (585)
Q Consensus 87 l~~~l~~l~~~~~-----------------------------------~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 131 (585)
|+-.+..++-|++ +.||....++++.++..++- +.++||++
T Consensus 442 ILvViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasalgi----p~llpfLk 517 (1172)
T KOG0213|consen 442 ILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASALGI----PALLPFLK 517 (1172)
T ss_pred eEEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhCc----HHHHHHHH
Confidence 4433444444444 44555555555544444432 34899999
Q ss_pred HhhcCc-CccchhhHHhhhHhhcCCCCh---HHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcc---cchHHHHH
Q 007918 132 RLAAGE-WFTARVSACGLFHIAYPSAPD---ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIM 204 (585)
Q Consensus 132 ~l~~~~-~~~~r~~a~~~l~~~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~ 204 (585)
.+++++ +|..|.++..+...++...+- .+...++.++.+++.|....||..++.++..+++..++ +.+...+.
T Consensus 518 avc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlk 597 (1172)
T KOG0213|consen 518 AVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLK 597 (1172)
T ss_pred HHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 999998 899999998888777665554 47788999999999999999999999999999988765 56677778
Q ss_pred HHHHHhccC-hhHHHHHHHHHHHHhhccCch---hhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCccc--ccc
Q 007918 205 SIFEDLTQD-DSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMD 278 (585)
Q Consensus 205 ~~l~~l~~d-~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~--~~~ 278 (585)
|++...-++ ...-.+.+.+++.++....++ .+...++-++.+-+..++.+.++..+..+...|..-|.+.. ..+
T Consensus 598 pLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~d 677 (1172)
T KOG0213|consen 598 PLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFD 677 (1172)
T ss_pred HHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhh
Confidence 888776666 445556666677666655542 34445666677777777777787777777777665443211 111
Q ss_pred ---------------------------------------hHHHHHHhccCChHHHHHHHHHHHHHHHHhhCH--------
Q 007918 279 ---------------------------------------LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP-------- 311 (585)
Q Consensus 279 ---------------------------------------l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~-------- 311 (585)
++.-.+.-++|+.+..|+..++....+...+|.
T Consensus 678 ilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderle 757 (1172)
T KOG0213|consen 678 ILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLE 757 (1172)
T ss_pred hhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHH
Confidence 222223334566666777777776666554431
Q ss_pred ------------------------------------HHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhh---CHHH
Q 007918 312 ------------------------------------ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL---GKDA 352 (585)
Q Consensus 312 ------------------------------------~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~---~~~~ 352 (585)
..+.+.+...+...++++.+.||..++..++.++..+ +.+.
T Consensus 758 E~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~ 837 (1172)
T KOG0213|consen 758 ERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEK 837 (1172)
T ss_pred HHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHH
Confidence 1223345555566678899999999999998887665 4555
Q ss_pred HHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHh---hhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChh
Q 007918 353 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 429 (585)
Q Consensus 353 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~ 429 (585)
.+.++--++...+....++|--..+.++..++...|-.... ..++|.+..++++....+...++..++.++......
T Consensus 838 ~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~ 917 (1172)
T KOG0213|consen 838 LMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEY 917 (1172)
T ss_pred HHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCccc
Confidence 67777778888999999999999999999998887654322 468899999999999999999999999999865433
Q ss_pred hHHHHHHHH---HHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcCh
Q 007918 430 FFDDKLGAL---CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS 506 (585)
Q Consensus 430 ~~~~~l~~~---l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~ 506 (585)
.-..+.+.+ ++.++...+.++|.+|.+++|.+++..|+. .++..+++.+.....+.|.+..-+++-+++.||+
T Consensus 918 v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq----dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p 993 (1172)
T KOG0213|consen 918 VSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP 993 (1172)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH----HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc
Confidence 223344444 445667889999999999999999999986 4788888888888888888888888888998887
Q ss_pred HHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007918 507 EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 579 (585)
Q Consensus 507 ~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~ 579 (585)
-.++|.+.+-...+..+|+..++++++.+++..+.- ++.-.+.|.|...+.|.|..-|..|..++..+.
T Consensus 994 ----FtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 994 ----FTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred ----hhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence 467899999888999999999999999999988753 566789999999999999999999999988764
No 7
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3e-26 Score=215.28 Aligned_cols=561 Identities=18% Similarity=0.194 Sum_probs=374.6
Q ss_pred HHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhcccccccccCC-chHHHHHHHHHHhcccc----ccC---Ccch
Q 007918 12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDD-DDEVLLAMAEELGVFIP----YVG---GVEH 83 (585)
Q Consensus 12 ~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~-~~~vr~~~~~~l~~l~~----~~~---~~~~ 83 (585)
...+..+.+.++-.|...-..+.+++..-| -..|.+++|.|.++.+. +.+...-+..+|.++.+ .+. ....
T Consensus 93 s~~l~~lgd~~~lIr~tvGivITTI~s~~~-~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rp 171 (885)
T KOG2023|consen 93 SECLHGLGDASPLIRATVGIVITTIASTGG-LQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRP 171 (885)
T ss_pred HHHHhhccCchHHHHhhhhheeeeeecccc-cccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCc
Confidence 456777888899999888777777776555 45668999999884443 33444444444444432 111 1234
Q ss_pred HHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhH--HhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCCh---
Q 007918 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDL--VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD--- 158 (585)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~--- 158 (585)
...++|-+.++..++.+.+|..|+.++.+++-..+..-. .+.++..+..+.+|+++.||+..|..+..+.+.-++
T Consensus 172 l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ 251 (885)
T KOG2023|consen 172 LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLV 251 (885)
T ss_pred hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcc
Confidence 566888888999999999999999999998765554322 234666667788899999999999998888776655
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhccc----chHHHHHHHHHH----------hcc------------
Q 007918 159 ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFED----------LTQ------------ 212 (585)
Q Consensus 159 ~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~----------l~~------------ 212 (585)
.+...+++++++..+|.+..|--.|++....++..--.+ .+.++++|++.. +++
T Consensus 252 phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDre 331 (885)
T KOG2023|consen 252 PHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDRE 331 (885)
T ss_pred cchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchh
Confidence 378899999999999999999999999999988753221 233444554321 011
Q ss_pred ------------------------------C------hhHHHHHHHHHHHHhhccCchhhhhhhHHHHHHhccCCChHHH
Q 007918 213 ------------------------------D------DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVR 256 (585)
Q Consensus 213 ------------------------------d------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR 256 (585)
| ++.|+.++.+++.++..++++ ..+.++|.+.+.+..+.|.+|
T Consensus 332 eDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e-lL~~l~PlLk~~L~~~~W~vr 410 (885)
T KOG2023|consen 332 EDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE-LLPILLPLLKEHLSSEEWKVR 410 (885)
T ss_pred hhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH-HHHHHHHHHHHHcCcchhhhh
Confidence 0 358998899999988877664 588899999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcccc--cchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHH---HHHHhhHHHHHHhccCCcH
Q 007918 257 YMVANQLYELCEAVGPEPTR--MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQ 331 (585)
Q Consensus 257 ~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d~~~ 331 (585)
.+++-++|.++++.-+-..+ ..++|++++++.|+.+-||...|++|+++++..-.+ .+...++.-+.+.+-|.+.
T Consensus 411 EagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK 490 (885)
T KOG2023|consen 411 EAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNK 490 (885)
T ss_pred hhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccH
Confidence 99999999999987554433 369999999999999999999999999998876433 2223333344455568999
Q ss_pred HHHHHHHHHHHhhchhhCHHH--HHHhHHHHHHHhhc---CCChHHHHHHHHHhHHhhhhhc----hhHHhhhHHHHHHH
Q 007918 332 HVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLK---DEFPDVRLNIISKLDQVNQVIG----IDLLSQSLLPAIVE 402 (585)
Q Consensus 332 ~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~ll~~l~~ 402 (585)
+|+++++.++..+-+..|.+. +.+.++..+...++ ..+-- ....+++.++...| ...+.+.++|.+.+
T Consensus 491 ~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLl---ILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~ 567 (885)
T KOG2023|consen 491 KVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLL---ILYDAIGTLADSVGHALNKPAYIQILMPPLIE 567 (885)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhccee---hHHHHHHHHHHHHHHhcCcHHHHHHhccHHHH
Confidence 999999999999877766443 23333333332222 11111 22344555554443 33455666666654
Q ss_pred ---HhcCCChHHHHHHHHHhHH---------------------------------------------------------H
Q 007918 403 ---LAEDRHWRVRLAIIEYIPL---------------------------------------------------------L 422 (585)
Q Consensus 403 ---~~~~~~~~~r~~~~~~l~~---------------------------------------------------------l 422 (585)
.+.|++..+ .=.+++++. +
T Consensus 568 KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGL 646 (885)
T KOG2023|consen 568 KWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGL 646 (885)
T ss_pred HHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHH
Confidence 233333211 112222222 2
Q ss_pred HHhhChh----hHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhcCcchHHHHHHHHH
Q 007918 423 ASQLGVG----FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTILRA 496 (585)
Q Consensus 423 ~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~~~~~~~R~~a~~~ 496 (585)
++.+|.. .....+..++..++.|+.++||+.+...+|.+++...... ....++|.+-..++..+..+..+|+++
T Consensus 647 aegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WA 726 (885)
T KOG2023|consen 647 AEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWA 726 (885)
T ss_pred HHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHH
Confidence 2222211 1123467778888899999999999999999988753321 234566666666666778888999999
Q ss_pred HHHhhhhcChHH--HHhcHHHHHHhhcCCC--CchHHHHHHHHHHHHHhhhch---HHHHhhHHHHHHHhcCCCCccHHH
Q 007918 497 ISLLAPVMGSEI--TCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCLVELTEDPDVDVRF 569 (585)
Q Consensus 497 l~~l~~~~~~~~--~~~~i~~~l~~~l~d~--~~~vR~~~~~~l~~l~~~~~~---~~~~~~~~~~l~~l~~D~~~~Vr~ 569 (585)
+|.++..+|.+. +...++..|...++.+ ...+-.+.+.++|.+....+. +.....+.|....+.+=.|.+-+.
T Consensus 727 iGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~ 806 (885)
T KOG2023|consen 727 IGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKE 806 (885)
T ss_pred HHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHH
Confidence 999998888763 2333333444444433 445667788888887655443 244455666666655444555566
Q ss_pred HHHHHHHHH
Q 007918 570 FATQAIQSI 578 (585)
Q Consensus 570 ~a~~al~~l 578 (585)
.|-+++-.+
T Consensus 807 sAFrG~c~m 815 (885)
T KOG2023|consen 807 SAFRGLCNM 815 (885)
T ss_pred HHHHHHHHh
Confidence 665555443
No 8
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.4e-23 Score=200.77 Aligned_cols=524 Identities=16% Similarity=0.196 Sum_probs=376.2
Q ss_pred cCCchHHHHHHHHHHhccccccCCcchHHhchHHHhhhhhchhhH-HHHHHHHHHHHHHhhcChhhHHhhHHHHHHH---
Q 007918 57 NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETC-VRDKAVESLCRIGSQMRESDLVDWYIPLVKR--- 132 (585)
Q Consensus 57 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~-vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~--- 132 (585)
....|.+...++.+++.++...=....++.+++.+..-..++.+. +++.++++++.+|+.+.++...+..-..+..
T Consensus 100 ~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~ 179 (859)
T KOG1241|consen 100 GSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQ 179 (859)
T ss_pred CCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHh
Confidence 334555555666666666543211234566666666666666655 9999999999999999998665443333322
Q ss_pred -hh-cCcCccchhhHHhhhHhhcCC-----CChHHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcc---cchHHH
Q 007918 133 -LA-AGEWFTARVSACGLFHIAYPS-----APDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTD 202 (585)
Q Consensus 133 -l~-~~~~~~~r~~a~~~l~~~~~~-----~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~ 202 (585)
.. ..++..+|.+|.+++....++ ..+..++-++.......+.++.++|.+|..+|.+++..... ..+.+.
T Consensus 180 gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~a 259 (859)
T KOG1241|consen 180 GMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQA 259 (859)
T ss_pred hccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 234788999999887765443 23457888889999999999999999999999999876522 222333
Q ss_pred HHHHHHH-hccC-hhHHHHHHHHHHHHhhccCc---------h------------hhhhhhHHHHHHhcc-------CCC
Q 007918 203 IMSIFED-LTQD-DSVRLLAVEGCAALGKLLEP---------Q------------DCVAHILPVIVNFSQ-------DKS 252 (585)
Q Consensus 203 l~~~l~~-l~~d-~~vr~~a~~~l~~l~~~~~~---------~------------~~~~~~~~~l~~~~~-------d~~ 252 (585)
++++... +.++ |+|...+++.+..+++.--+ + .-.+.+.|.+.+++. |++
T Consensus 260 lfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~Dd 339 (859)
T KOG1241|consen 260 LFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDD 339 (859)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCccccc
Confidence 4443333 4444 88999999999987752111 0 112357777776542 468
Q ss_pred hHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHH---HHHHhhHHHHHHhccCC
Q 007918 253 WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDS 329 (585)
Q Consensus 253 ~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d~ 329 (585)
|..-.++..||.-+++..|++..+ .++|.+.+.++.++|.-|.++.-+++.+...-.++ .+.+..+|.+..+..|+
T Consensus 340 Wnp~kAAg~CL~l~A~~~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~ 418 (859)
T KOG1241|consen 340 WNPAKAAGVCLMLFAQCVGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP 418 (859)
T ss_pred CcHHHHHHHHHHHHHHHhcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc
Confidence 999999999999999999998865 78999999999999999999999999998754443 34467788889999999
Q ss_pred cHHHHHHHHHHHHhhchhhC----HHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchh-----------HHhh
Q 007918 330 SQHVRSALASVIMGMAPLLG----KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-----------LLSQ 394 (585)
Q Consensus 330 ~~~vr~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-----------~~~~ 394 (585)
.-.||.++...++.+++..+ +......+++.+...++|. |.|-.++++++..+++...+- .+.+
T Consensus 419 sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~ 497 (859)
T KOG1241|consen 419 SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYE 497 (859)
T ss_pred hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHH
Confidence 99999999999999988775 3344566777888888886 899999999999888654211 1112
Q ss_pred hHHHHHHHHhc--C-CChHHHHHHHHHhHHHHHhhChhhH----------------------------------------
Q 007918 395 SLLPAIVELAE--D-RHWRVRLAIIEYIPLLASQLGVGFF---------------------------------------- 431 (585)
Q Consensus 395 ~ll~~l~~~~~--~-~~~~~r~~~~~~l~~l~~~~~~~~~---------------------------------------- 431 (585)
.++..|.+... | .+...|.++.+++..+.+....+.+
T Consensus 498 ~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~ 577 (859)
T KOG1241|consen 498 AIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCN 577 (859)
T ss_pred HHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHH
Confidence 23333333221 2 3456888888888888766442211
Q ss_pred ----------------HHHHHHHHHHHccC-CchHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhh-cCcchHHHH
Q 007918 432 ----------------DDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMI-NNPHYLYRM 491 (585)
Q Consensus 432 ----------------~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~l-~~~~~~~R~ 491 (585)
.+.++..+++.++. .+.-|.+.|+-+++.++..+|..| +.+.+.|.+..-+ +-.++.+..
T Consensus 578 ~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~ 657 (859)
T KOG1241|consen 578 TLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCA 657 (859)
T ss_pred HHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 12344555555555 444577788888888888888876 4588999998877 556799999
Q ss_pred HHHHHHHHhhhhcChHH--HHhcHHHHHHhhcCCC--CchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhc---CC
Q 007918 492 TILRAISLLAPVMGSEI--TCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELT---ED 562 (585)
Q Consensus 492 ~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~l~d~--~~~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~l~---~D 562 (585)
+++...+.++..++.+. +.+.++..|++.++++ +.+|+-..+.++|.|+..++.. .+...+++.+.... .|
T Consensus 658 ~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d 737 (859)
T KOG1241|consen 658 AAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTD 737 (859)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999888765 5788999999999887 6789999999999999888764 56678888888754 34
Q ss_pred C--------CccHHHHHHHHHHHHHHhh
Q 007918 563 P--------DVDVRFFATQAIQSIDHVM 582 (585)
Q Consensus 563 ~--------~~~Vr~~a~~al~~l~~~l 582 (585)
+ ..++|..+..++--|-+-+
T Consensus 738 ~~~~~~~dYvd~LRe~~leay~gi~qgl 765 (859)
T KOG1241|consen 738 PADDSMVDYVDELREGILEAYTGIIQGL 765 (859)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 1356777776665554443
No 9
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.95 E-value=1.9e-24 Score=201.43 Aligned_cols=556 Identities=17% Similarity=0.234 Sum_probs=396.1
Q ss_pred cHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhccccccc-ccCCch-H-HHHHHHHHHhccccccCCcchHHh
Q 007918 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDD-E-VLLAMAEELGVFIPYVGGVEHAHV 86 (585)
Q Consensus 10 ~i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~-~-vr~~~~~~l~~l~~~~~~~~~~~~ 86 (585)
-+-.++-..|++++-.|..+++.|...+..+|++-..+.++|.+.. ..++.. . +.+.+-+.|..+.... ..|.+.
T Consensus 169 ~v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~--~pyvhk 246 (975)
T COG5181 169 DVYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLK--VPYVHK 246 (975)
T ss_pred hHHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhccccc--ccceee
Confidence 3667888899999999999999999999999999999999999987 333322 2 2233444444432211 012222
Q ss_pred chHHHhhh-----------------------------------hhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHH
Q 007918 87 LLPPLETL-----------------------------------CTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVK 131 (585)
Q Consensus 87 l~~~l~~l-----------------------------------~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 131 (585)
|+-.+..+ +.++++.||....++.+.+++.++-+ .++|++.
T Consensus 247 ILvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv~----~llpfl~ 322 (975)
T COG5181 247 ILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALGVE----ELLPFLE 322 (975)
T ss_pred EEEEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhCcH----HHHHHHH
Confidence 22212222 24566677777777777666666543 5899999
Q ss_pred HhhcCc-CccchhhHHhhhHhhcCCCCh---HHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcc---cchHHHHH
Q 007918 132 RLAAGE-WFTARVSACGLFHIAYPSAPD---ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIM 204 (585)
Q Consensus 132 ~l~~~~-~~~~r~~a~~~l~~~~~~~~~---~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~ 204 (585)
.++.+. +|..|.++..+...++..++- .+...++..+.+++.|....||..++.++..+++..++ +.+...+.
T Consensus 323 a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~ 402 (975)
T COG5181 323 ALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLC 402 (975)
T ss_pred HHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHH
Confidence 999997 899999998888877776665 47788899999999999999999999999999998776 55666777
Q ss_pred HHHHHhccC-hhHHHHHHHHHHHHhhccCch---hhhhhhHHHHHHhcc----------------------CCChHHHHH
Q 007918 205 SIFEDLTQD-DSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQ----------------------DKSWRVRYM 258 (585)
Q Consensus 205 ~~l~~l~~d-~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~----------------------d~~~~vR~~ 258 (585)
|++....++ ...-.+.+.+.+.+...+.++ .+....+.++...++ +..|..|..
T Consensus 403 pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~ 482 (975)
T COG5181 403 PLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQ 482 (975)
T ss_pred HHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHh
Confidence 777766555 334455556666555555542 111222222222222 333444432
Q ss_pred H-HHHHHHHHHH--hCCc----------------ccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCH--------
Q 007918 259 V-ANQLYELCEA--VGPE----------------PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP-------- 311 (585)
Q Consensus 259 ~-~~~l~~l~~~--~~~~----------------~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~-------- 311 (585)
. .+.+..+... .++. .....+..-+.+.++|+....|..++.....+...+|.
T Consensus 483 v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErle 562 (975)
T COG5181 483 VSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLE 562 (975)
T ss_pred hcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHH
Confidence 2 2222222111 1110 00123444555666777666777776666655544331
Q ss_pred ------------------------------------HHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhh---CHHH
Q 007918 312 ------------------------------------ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL---GKDA 352 (585)
Q Consensus 312 ------------------------------------~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~---~~~~ 352 (585)
..+...++..+..+++++.+.||..++..++.++..+ |...
T Consensus 563 erl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~ 642 (975)
T COG5181 563 ERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETK 642 (975)
T ss_pred HHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHH
Confidence 0122445666677788999999999999888877655 4555
Q ss_pred HHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHH---hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChh
Q 007918 353 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 429 (585)
Q Consensus 353 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~ 429 (585)
.+..+-.++...+....++|--..+.++..+....+-..+ ...++|.+..+++++...+....+..++.++...+..
T Consensus 643 ~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~pey 722 (975)
T COG5181 643 ELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEY 722 (975)
T ss_pred HHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCccc
Confidence 5677777888889999999999999999998877654422 1467888889999999999999999999998765432
Q ss_pred hHHHHHHHH---HHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcCh
Q 007918 430 FFDDKLGAL---CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS 506 (585)
Q Consensus 430 ~~~~~l~~~---l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~ 506 (585)
.-..+.+.+ +.+.+...+.++|.+|.+++|.+.+..|+. .++..+++.+...+.+.|....-+++-+++.+|+
T Consensus 723 i~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq----dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp 798 (975)
T COG5181 723 IGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ----DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP 798 (975)
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH----HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc
Confidence 222334444 455677889999999999999999999986 4778888888888888999999999999999998
Q ss_pred HHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007918 507 EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 579 (585)
Q Consensus 507 ~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~ 579 (585)
-.++|.+..-...++.+|+..++++++.+++..+.. ++.-.+.|.|...+.|.|+.-|..|...+..+.
T Consensus 799 ----fsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~ 869 (975)
T COG5181 799 ----FSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLV 869 (975)
T ss_pred ----hhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence 467899988888999999999999999999988764 566789999999999999999999999887763
No 10
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.95 E-value=5e-23 Score=195.88 Aligned_cols=559 Identities=16% Similarity=0.154 Sum_probs=379.6
Q ss_pred HHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhccccccc-ccCC-chHHHHHHHHHHhccccccCCcc--hHHh
Q 007918 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD-DDEVLLAMAEELGVFIPYVGGVE--HAHV 86 (585)
Q Consensus 11 i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~-~~~vr~~~~~~l~~l~~~~~~~~--~~~~ 86 (585)
|..+-..+.+.|+-+|....+.++.++.++|- ..++|||.. |... +-+-|....++..+++.+.|+.. +...
T Consensus 478 istmrpDidn~deYVRnttarafavvasalgi----p~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~ 553 (1172)
T KOG0213|consen 478 ISTMRPDIDNKDEYVRNTTARAFAVVASALGI----PALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKP 553 (1172)
T ss_pred HHhhcCCcccccHHHHHHHHHHHHHHHHHhCc----HHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHH
Confidence 34444556788999999999999999999984 478999988 6665 56777777777766666665433 4566
Q ss_pred chHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhH--HhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChH----H
Q 007918 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDL--VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----L 160 (585)
Q Consensus 87 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~ 160 (585)
++.++.+.+.|+...||..++.+++.+++..+|-.+ .+.++..+.+-....--..-.+..++++.+++...++ +
T Consensus 554 lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yy 633 (1172)
T KOG0213|consen 554 LVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYY 633 (1172)
T ss_pred HHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHh
Confidence 888899999999999999999999999998877333 2223333333222211112233346677788777664 4
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhccc--chHHHHHHH--------------------------------
Q 007918 161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSI-------------------------------- 206 (585)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~-------------------------------- 206 (585)
-.+++-.+..-.+.++.++++..++.+.+.+...+-+ ....+++|.
T Consensus 634 Trevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG 713 (1172)
T KOG0213|consen 634 TREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVG 713 (1172)
T ss_pred HHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhC
Confidence 5677778888888999999999999888888765532 111222221
Q ss_pred --------HHHhccC-hhHHHHHHHHHHHHhhccCchhh----hhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCC-
Q 007918 207 --------FEDLTQD-DSVRLLAVEGCAALGKLLEPQDC----VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP- 272 (585)
Q Consensus 207 --------l~~l~~d-~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~- 272 (585)
+..+-.+ +..|...+++...+...++...+ .+.++..+...++..+.... ..+.+|+.++..+|.
T Consensus 714 ~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r 792 (1172)
T KOG0213|consen 714 SDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGR 792 (1172)
T ss_pred chHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhc
Confidence 1111112 34777778887777777765222 23333333333333322222 456777878877776
Q ss_pred -cccccchHHHHHHhccCChHHHHHHHHHHHHHHHHh---hCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhh
Q 007918 273 -EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI---LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL 348 (585)
Q Consensus 273 -~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~---~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~ 348 (585)
+....++...+...++++.+.||..++..++.++.. ++.+....++--.+.+.+...+++|--..+.++..+...+
T Consensus 793 ~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvi 872 (1172)
T KOG0213|consen 793 VKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVI 872 (1172)
T ss_pred cccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhc
Confidence 444457778888899999999999999988877654 4455555566666778888899999999999999888877
Q ss_pred CHHH---HHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhh----chhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHH
Q 007918 349 GKDA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI----GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 421 (585)
Q Consensus 349 ~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~----~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~ 421 (585)
|... -...++|.+...|++....|..+++..++.++..- +...+. .+.-.+.++++..+..+|.++...++.
T Consensus 873 gm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM-RIcfeLlelLkahkK~iRRaa~nTfG~ 951 (1172)
T KOG0213|consen 873 GMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM-RICFELLELLKAHKKEIRRAAVNTFGY 951 (1172)
T ss_pred cccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 6432 24678888889999999999999999999998643 322222 233445567777888999999999999
Q ss_pred HHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhh
Q 007918 422 LASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLA 501 (585)
Q Consensus 422 l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~ 501 (585)
+++.+|+.. ++..+++.+...+...|.+..-+++-+++..|+- .++|.+++-...|+..+....+.+++.+.
T Consensus 952 IakaIGPqd----VLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF----tVLPalmneYrtPe~nVQnGVLkalsf~F 1023 (1172)
T KOG0213|consen 952 IAKAIGPQD----VLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF----TVLPALMNEYRTPEANVQNGVLKALSFMF 1023 (1172)
T ss_pred HHHhcCHHH----HHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch----hhhHHHHhhccCchhHHHHhHHHHHHHHH
Confidence 999999754 4555555666666666666666666666665553 36777777777777777777777777776
Q ss_pred hhcChH--HHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc---hHHHHhhHHHHHHHhcCCCCccHHHHHHHHHH
Q 007918 502 PVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD---QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQ 576 (585)
Q Consensus 502 ~~~~~~--~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~ 576 (585)
+..|.- .+...+.|.+.+.+.|.++.-|+.++.++.+++.... -.+...+++..++--.-|+.|.|......+++
T Consensus 1024 eyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~e 1103 (1172)
T KOG0213|consen 1024 EYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAME 1103 (1172)
T ss_pred HHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHH
Confidence 665542 2455667777777777777777777777777654432 23333445555554344667777777777777
Q ss_pred HHHHhhc
Q 007918 577 SIDHVMM 583 (585)
Q Consensus 577 ~l~~~l~ 583 (585)
.++..|+
T Consensus 1104 g~r~~Lg 1110 (1172)
T KOG0213|consen 1104 GLRVALG 1110 (1172)
T ss_pred HHHHHhc
Confidence 7766654
No 11
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.1e-22 Score=189.70 Aligned_cols=574 Identities=16% Similarity=0.215 Sum_probs=413.1
Q ss_pred CCccc--HHHHHHHhcChhHH-HHHHHhhhHHHHHHhhChhhhhh---hccccccc---ccCCchHHHHHHHHHHhcccc
Q 007918 6 EPLYP--IAVLIDELKNDDIQ-LRLNSIRRLSTIARALGEERTRK---ELIPFLSE---NNDDDDEVLLAMAEELGVFIP 76 (585)
Q Consensus 6 ~~~~~--i~~l~~~l~~~~~~-~R~~a~~~l~~~~~~~~~~~~~~---~l~~~l~~---~~d~~~~vr~~~~~~l~~l~~ 76 (585)
+.++| |..|.....+..+. .|..+++.+|-++..++|+...+ .++-.+.+ -.+.+..||.++..+|-+-..
T Consensus 124 ~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLe 203 (859)
T KOG1241|consen 124 QNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLE 203 (859)
T ss_pred hhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHH
Confidence 34565 77888887777666 88899999999999888874433 23333333 345677899999888865443
Q ss_pred ccC----CcchHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhh----HHHHHHHhhcCcCccchhhHHhh
Q 007918 77 YVG----GVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDW----YIPLVKRLAAGEWFTARVSACGL 148 (585)
Q Consensus 77 ~~~----~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~----l~~~l~~l~~~~~~~~r~~a~~~ 148 (585)
+.+ .+...+.++.......+.+|.+||.+|..+|.+|+.-.- +....+ +.++.....+++++.+...+...
T Consensus 204 f~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY-~~m~~yM~~alfaitl~amks~~deValQaiEF 282 (859)
T KOG1241|consen 204 FTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYY-EFMEPYMEQALFAITLAAMKSDNDEVALQAIEF 282 (859)
T ss_pred HHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 322 233567788888888899999999999999999876442 223333 34444445567778888888777
Q ss_pred hHhhcC---------------CCCh-------HHHHHHHHHHHhhcC-------CCchHHHHHHHHhHHHHHhhhcccch
Q 007918 149 FHIAYP---------------SAPD-------ILKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHL 199 (585)
Q Consensus 149 l~~~~~---------------~~~~-------~~~~~l~~~l~~l~~-------d~~~~vr~~a~~~l~~l~~~~~~~~~ 199 (585)
.+.++. ..++ ...+.+.|.+++++. |++|..-++|..+|.-++...+ +.+
T Consensus 283 WsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~-D~I 361 (859)
T KOG1241|consen 283 WSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVG-DDI 361 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhc-ccc
Confidence 775543 1221 123467777776652 3568899999999998888774 567
Q ss_pred HHHHHHHHHHhccC--hhHHHHHHHHHHHHhhccCch---hhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcc
Q 007918 200 KTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP 274 (585)
Q Consensus 200 ~~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~ 274 (585)
.+.++|++.+-.+. +..|..++-+++.+...-.+. ......+|.+..+..|++-.||..++.+||.+++.++...
T Consensus 362 v~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~ 441 (859)
T KOG1241|consen 362 VPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAI 441 (859)
T ss_pred hhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhc
Confidence 78999999976666 679999999999998865543 3456678889999999999999999999999999887533
Q ss_pred cc----cchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHH-----------HHHHhhHHHHHHhcc--C-CcHHHHHH
Q 007918 275 TR----MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-----------LAIQHILPCVKELSS--D-SSQHVRSA 336 (585)
Q Consensus 275 ~~----~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~-----------~~~~~i~~~l~~~~~--d-~~~~vr~~ 336 (585)
.+ ...++.+.+.+.|. |.|...+++++..+++..... .+.+.++..+..... | .+...|.+
T Consensus 442 ~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~A 520 (859)
T KOG1241|consen 442 INQELLQSKLSALLEGLNDE-PRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSA 520 (859)
T ss_pred ccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHH
Confidence 32 34667777777874 899999999999998654211 122334444433322 3 45689999
Q ss_pred HHHHHHhhchhhCHHHH--HHhHHHHHHH----hhc-------C--CChHHHHHHHHHhHHhhhhhchh--HHhhhHHHH
Q 007918 337 LASVIMGMAPLLGKDAT--IEQLLPIFLS----LLK-------D--EFPDVRLNIISKLDQVNQVIGID--LLSQSLLPA 399 (585)
Q Consensus 337 a~~~l~~l~~~~~~~~~--~~~l~~~l~~----~l~-------d--~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~ 399 (585)
+.++|+.+.+..+++.+ ...+.+.+.. .++ | ...++....+..|..+...++.+ ...+.++..
T Consensus 521 AYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~l 600 (859)
T KOG1241|consen 521 AYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGL 600 (859)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHH
Confidence 99999999988876543 2222333322 221 1 12355666777788877777653 355778888
Q ss_pred HHHHhcC-CChHHHHHHHHHhHHHHHhhChhh--HHHHHHHHHHHHc-cCCchHHHHHHHHHHHHHHHHhCHHH--HHhh
Q 007918 400 IVELAED-RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPEW--AMQH 473 (585)
Q Consensus 400 l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~ 473 (585)
+..+++. .+.-+...++-+++.++..+|+.| +.+.+.|++...+ +-.+..|..+|+...|.++..++.++ +.+.
T Consensus 601 flri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~ 680 (859)
T KOG1241|consen 601 FLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDE 680 (859)
T ss_pred HHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 8888887 455678889999999999999776 4477889988888 66788999999999999999999875 4588
Q ss_pred hHHHHHhhhcCcc--hHHHHHHHHHHHHhhhhcChHH--HHhcHHHHHHhhcC---CC--------CchHHHHHHHHHHH
Q 007918 474 ITPQVLEMINNPH--YLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASK---DR--------VPNIKFNVAKVLQS 538 (585)
Q Consensus 474 ll~~l~~~l~~~~--~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~l~---d~--------~~~vR~~~~~~l~~ 538 (585)
+...+++.+++++ ..++-..+.+++.|+-.+|.++ +.+.++|.+....+ |+ ...+|.+++.+..-
T Consensus 681 ~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~g 760 (859)
T KOG1241|consen 681 LMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTG 760 (859)
T ss_pred HHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 8899999998885 6788899999999999888764 67888998887762 22 24589999999988
Q ss_pred HHhhhch---H----HHHhhHHHHHHHhcCCCCc--cHHHHHHHHHHHHHHhh
Q 007918 539 LIPIVDQ---S----MVEKTIRPCLVELTEDPDV--DVRFFATQAIQSIDHVM 582 (585)
Q Consensus 539 l~~~~~~---~----~~~~~~~~~l~~l~~D~~~--~Vr~~a~~al~~l~~~l 582 (585)
+...++. . .+.+.++..+.+...|++- .+-..|...++.++.+.
T Consensus 761 i~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~f 813 (859)
T KOG1241|consen 761 IIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMF 813 (859)
T ss_pred HHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHc
Confidence 8877652 1 4556677777776666554 35556666677766654
No 12
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.94 E-value=6.1e-22 Score=193.46 Aligned_cols=567 Identities=14% Similarity=0.186 Sum_probs=378.8
Q ss_pred ccHHHHHHHhcChhHHHHHHHhhhHHH----HHHhhChhhhhhhccccccc-ccCCchHHHHHHHHHHhccccccCCcch
Q 007918 9 YPIAVLIDELKNDDIQLRLNSIRRLST----IARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEH 83 (585)
Q Consensus 9 ~~i~~l~~~l~~~~~~~R~~a~~~l~~----~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~ 83 (585)
|+| -|+++|.+.|.+.|.+|.+-|-. -...++.+..+ .++..+.+ +.|.++||+..+.+++|.++..++. +.
T Consensus 6 ~~i-~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~-kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke-~~ 82 (1233)
T KOG1824|consen 6 VGI-NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSER-KVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKE-DQ 82 (1233)
T ss_pred HHH-HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchh-HHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchH-HH
Confidence 345 78999999999999999775542 22234444444 34444444 7889999999999999999988773 34
Q ss_pred HHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcCh-------hhHHhhHHHHHHHhhc--CcCccchhhHHhhhHhhcC
Q 007918 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE-------SDLVDWYIPLVKRLAA--GEWFTARVSACGLFHIAYP 154 (585)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~-------~~~~~~l~~~l~~l~~--~~~~~~r~~a~~~l~~~~~ 154 (585)
...+..-|..-+-+....-|..+.-+|......++| ..+...+.|.+..... .+...++..++.+++....
T Consensus 83 le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 83 LETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred HHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 455555444443456677889899999998888876 2233445665554432 3356688888988888877
Q ss_pred CCCh---HHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC--hhHHHHHHHHHHHHhh
Q 007918 155 SAPD---ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGK 229 (585)
Q Consensus 155 ~~~~---~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~ 229 (585)
+++. .....++..+..-+..+-..||+.++.+++.++...+...+...+..++..+.+. ...-+..+++++.++.
T Consensus 163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r 242 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICR 242 (1233)
T ss_pred hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence 7765 3556666666666778888999999999999999886655544444445555444 3344457888888888
Q ss_pred ccCc--hhhhhhhHHHHHHhc---cCCChHHHHHHHHHHHHHHHHhCCccccc--chHHHHHHhcc--------------
Q 007918 230 LLEP--QDCVAHILPVIVNFS---QDKSWRVRYMVANQLYELCEAVGPEPTRM--DLVPAYVRLLR-------------- 288 (585)
Q Consensus 230 ~~~~--~~~~~~~~~~l~~~~---~d~~~~vR~~~~~~l~~l~~~~~~~~~~~--~l~~~l~~ll~-------------- 288 (585)
..+. ....+.+.|.+.+++ +.++.+.|...++.++.+....+++..+. .++....+.+.
T Consensus 243 ~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed 322 (1233)
T KOG1824|consen 243 QAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDED 322 (1233)
T ss_pred HhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchh
Confidence 7776 355778999999988 67788999999999999998877655432 23333222211
Q ss_pred --------------------CChHHHHHHHHHHHHHHHHhhCH--HHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhch
Q 007918 289 --------------------DNEAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP 346 (585)
Q Consensus 289 --------------------d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~ 346 (585)
|-+|.||++|++++..+...-.. ..+.+.+-|.+...+++.++.|+.-.+.++-.+-.
T Consensus 323 ~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~ 402 (1233)
T KOG1824|consen 323 AMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLK 402 (1233)
T ss_pred hhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 12499999999999887654221 13345666777777777777777766666554432
Q ss_pred hhCH----------------H-------HHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhh----------------
Q 007918 347 LLGK----------------D-------ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI---------------- 387 (585)
Q Consensus 347 ~~~~----------------~-------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---------------- 387 (585)
..+. . .....++..+...+++.+...|..+...|..+...+
T Consensus 403 qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~ 482 (1233)
T KOG1824|consen 403 QTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGII 482 (1233)
T ss_pred cCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhh
Confidence 2110 0 011233444444444444344555555555544322
Q ss_pred ---------------------------chhHH---hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhC---------h
Q 007918 388 ---------------------------GIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---------V 428 (585)
Q Consensus 388 ---------------------------~~~~~---~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---------~ 428 (585)
+++.+ .+.+.|.+.....|+.+.+-..++-....+.+.+- .
T Consensus 483 ~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~ 562 (1233)
T KOG1824|consen 483 YSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDA 562 (1233)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCC
Confidence 22222 12334445555677888888888887777777652 1
Q ss_pred hhHHHHHHHHHHHHc--cCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcC--cchHHHHHHHHHHHHhhhh-
Q 007918 429 GFFDDKLGALCMQWL--QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN--PHYLYRMTILRAISLLAPV- 503 (585)
Q Consensus 429 ~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~--~~~~~R~~a~~~l~~l~~~- 503 (585)
..+...+.....+.+ .|.+.+||+.|+.++|.+...+|+. ....+|..+..+.+ .+...|.+|+.++..|+..
T Consensus 563 ~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~--l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~ 640 (1233)
T KOG1824|consen 563 SPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDF--LGNELPRTLPILLERLGNEITRLTAVKALTLIAMSP 640 (1233)
T ss_pred ChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhh--hhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhcc
Confidence 222333444444443 5889999999999999999999842 33334444333333 3567899999999998763
Q ss_pred --cChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH---HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007918 504 --MGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 578 (585)
Q Consensus 504 --~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l 578 (585)
+.......+++|.+...+.......|.+++.++..++..++.. ...+.++..+-.+..+.|-.|-..|...+..+
T Consensus 641 l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl 720 (1233)
T KOG1824|consen 641 LDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTL 720 (1233)
T ss_pred ceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3334467888999999888888889999999999998776543 45566777777788888988888887777665
Q ss_pred HH
Q 007918 579 DH 580 (585)
Q Consensus 579 ~~ 580 (585)
..
T Consensus 721 ~~ 722 (1233)
T KOG1824|consen 721 AI 722 (1233)
T ss_pred Hh
Confidence 43
No 13
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.92 E-value=9.2e-21 Score=177.15 Aligned_cols=554 Identities=16% Similarity=0.155 Sum_probs=388.9
Q ss_pred HHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhccccccc-ccCC-chHHHHHHHHHHhccccccCCc--chHHhch
Q 007918 13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD-DDEVLLAMAEELGVFIPYVGGV--EHAHVLL 88 (585)
Q Consensus 13 ~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~-~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~ 88 (585)
.+-..+.+.|+-+|....+..+.++.++|- .+++||+.. +... .-+-|....+...++..++|.. .+...++
T Consensus 285 ~mrpDi~~~deYVRnvt~ra~~vva~algv----~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~ 360 (975)
T COG5181 285 SMRPDITSKDEYVRNVTGRAVGVVADALGV----EELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLL 360 (975)
T ss_pred eccCCcccccHHHHHHHHHHHHHHHHhhCc----HHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHH
Confidence 344457788999999999999999999884 478899987 5443 5566666656555555555432 2345577
Q ss_pred HHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhH--HhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChH----HHH
Q 007918 89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDL--VDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKT 162 (585)
Q Consensus 89 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~~~ 162 (585)
..+.+++.|+...||..++.++..+++..+|-.+ .+.++..+.+-....--.+-.+..++.+.+++-.+++ ...
T Consensus 361 ~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tr 440 (975)
T COG5181 361 KCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTR 440 (975)
T ss_pred HHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHH
Confidence 7888899999999999999999999998877332 2223333332222211112233345566677777765 457
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHhHHHHHhhh--cccchHHHHHHHH-----HH-hccC-hhHHHHHHHHHHHHhhccCc
Q 007918 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATV--EPAHLKTDIMSIF-----ED-LTQD-DSVRLLAVEGCAALGKLLEP 233 (585)
Q Consensus 163 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~l~~~l-----~~-l~~d-~~vr~~a~~~l~~l~~~~~~ 233 (585)
+.+.++...+++++.+.++..........+.- .+..+.+++.|.+ .. .+.| ...+ ....+-..+++..+.
T Consensus 441 e~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k-~v~~ttvilAk~~g~ 519 (975)
T COG5181 441 EHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYK-QVVLTTVILAKMGGD 519 (975)
T ss_pred HHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccc-eeehhHHHHHHHcCC
Confidence 88889999999998888876665554433321 1233334444322 22 2333 1111 111222223332222
Q ss_pred hhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcc---------------------------------------
Q 007918 234 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--------------------------------------- 274 (585)
Q Consensus 234 ~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~--------------------------------------- 274 (585)
..+...+.....|+....|..++.....+...+|...
T Consensus 520 ----~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~ 595 (975)
T COG5181 520 ----PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLE 595 (975)
T ss_pred ----hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehh
Confidence 2334444455566665566666555555544433211
Q ss_pred -----cccchHHHHHHhccCChHHHHHHHHHHHHHHHH---hhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhch
Q 007918 275 -----TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR---ILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP 346 (585)
Q Consensus 275 -----~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~---~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~ 346 (585)
....++..+..+++.+.+.||..++..++.++. .+|......++-..+.+.+...+++|--..+.++..+..
T Consensus 596 ~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~s 675 (975)
T COG5181 596 FRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYS 675 (975)
T ss_pred hccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhh
Confidence 012366677788899999999999888777655 445555556666677788888999999999999998877
Q ss_pred hhCHHH---HHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhh----chhHHhhhHHHHHHHHhcCCChHHHHHHHHHh
Q 007918 347 LLGKDA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI----GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 419 (585)
Q Consensus 347 ~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~----~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l 419 (585)
..+-.. -...++|.+...|++....|..+.+..++.++..- |...+. .+.-.+.+.+++.+..+|..|.+.+
T Consensus 676 v~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM-RIcfeLvd~Lks~nKeiRR~A~~tf 754 (975)
T COG5181 676 VHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM-RICFELVDSLKSWNKEIRRNATETF 754 (975)
T ss_pred hhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH-HHHHHHHHHHHHhhHHHHHhhhhhh
Confidence 765432 24678888888999999999999999999988643 333332 2444456677888999999999999
Q ss_pred HHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHH
Q 007918 420 PLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL 499 (585)
Q Consensus 420 ~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~ 499 (585)
+.+++.+|+.. ++..+++.++..+...|....-+++-+++..|+- .++|.+++-...|+..+....+.++..
T Consensus 755 G~Is~aiGPqd----vL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf----sVlP~lm~dY~TPe~nVQnGvLkam~f 826 (975)
T COG5181 755 GCISRAIGPQD----VLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF----SVLPTLMSDYETPEANVQNGVLKAMCF 826 (975)
T ss_pred hhHHhhcCHHH----HHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch----hhHHHHHhcccCchhHHHHhHHHHHHH
Confidence 99999999854 5677778888888888888888888888888874 589999999999999999999999999
Q ss_pred hhhhcChHH--HHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc---hHHHHhhHHHHHHHhcCCCCccHHHHHHHH
Q 007918 500 LAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD---QSMVEKTIRPCLVELTEDPDVDVRFFATQA 574 (585)
Q Consensus 500 l~~~~~~~~--~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~~~~~l~~l~~D~~~~Vr~~a~~a 574 (585)
+.+..|... +...+.|.+-+.+.|.++.-|+.+...+.+++...+ ..+..-+++..|+--.-|+.|.|.....++
T Consensus 827 mFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg 906 (975)
T COG5181 827 MFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEG 906 (975)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHH
Confidence 998888653 567889999999999999999999999999876543 344455677777765668999999999999
Q ss_pred HHHHHHhhcC
Q 007918 575 IQSIDHVMMS 584 (585)
Q Consensus 575 l~~l~~~l~~ 584 (585)
++.++..|++
T Consensus 907 ~e~~~~~lg~ 916 (975)
T COG5181 907 MESFATVLGS 916 (975)
T ss_pred HHHHHHHhcc
Confidence 9999998875
No 14
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.91 E-value=1.4e-19 Score=197.03 Aligned_cols=560 Identities=13% Similarity=0.099 Sum_probs=388.3
Q ss_pred cHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhh------hhhccccccc-ccCC---chHHHHHHHHHHhccccccC
Q 007918 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERT------RKELIPFLSE-NNDD---DDEVLLAMAEELGVFIPYVG 79 (585)
Q Consensus 10 ~i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~------~~~l~~~l~~-~~d~---~~~vr~~~~~~l~~l~~~~~ 79 (585)
.|..|++-|++.+++.|..|+..|..++..-..+.. ....+|.|.. +.+. +..++..++.+|.+++.+-.
T Consensus 100 aIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~e 179 (2102)
T PLN03200 100 CIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTD 179 (2102)
T ss_pred ChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCcc
Confidence 477888889999999999999999998753211111 2345666665 3332 22355666778888765322
Q ss_pred Ccc---hHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcCh--hh-HHhhHHHHHHHhhcC-cCccchhhHHhhhHhh
Q 007918 80 GVE---HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE--SD-LVDWYIPLVKRLAAG-EWFTARVSACGLFHIA 152 (585)
Q Consensus 80 ~~~---~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~--~~-~~~~l~~~l~~l~~~-~~~~~r~~a~~~l~~~ 152 (585)
+.. .....+|.+-.++.++++.++..|+.++..++...+. +. ...-.+|.+.++..+ ++..+|..|+.++..+
T Consensus 180 n~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nL 259 (2102)
T PLN03200 180 GFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEAL 259 (2102)
T ss_pred chHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 110 1123677788888889999999999999888765432 11 234467888888865 4568899999999998
Q ss_pred cCCCChH----HHHHHHHHHHhhcCCCc---------hHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC--hh-H
Q 007918 153 YPSAPDI----LKTELRSIYTQLCQDDM---------PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD--DS-V 216 (585)
Q Consensus 153 ~~~~~~~----~~~~l~~~l~~l~~d~~---------~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d--~~-v 216 (585)
+..-.+. .....++.+..++..++ ...++.+..+|++++... ..++|.+.++.++ +. +
T Consensus 260 As~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~------~~ll~~L~~ll~s~rd~~~ 333 (2102)
T PLN03200 260 SSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM------SALILYLGELSESPRSPAP 333 (2102)
T ss_pred hcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc------hhhHHHHHHhhcccchHHH
Confidence 8764331 12334566666665544 345889999999988643 2233333322222 00 0
Q ss_pred HHHH--------------------------HHHHHHHhhccCchhh----------------------hhhhHHHHHHhc
Q 007918 217 RLLA--------------------------VEGCAALGKLLEPQDC----------------------VAHILPVIVNFS 248 (585)
Q Consensus 217 r~~a--------------------------~~~l~~l~~~~~~~~~----------------------~~~~~~~l~~~~ 248 (585)
...+ ...|..+++.-.+... .....+.+..++
T Consensus 334 ~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL 413 (2102)
T PLN03200 334 IADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLI 413 (2102)
T ss_pred HHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhh
Confidence 1111 1222222221111100 112233444555
Q ss_pred cCCChHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHH---HHHHhhHHHH
Q 007918 249 QDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCV 322 (585)
Q Consensus 249 ~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l 322 (585)
...+..++..++.++..++..-.. .......+|.+++++..++..++..++..++.++..-... ......+|.+
T Consensus 414 ~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~L 493 (2102)
T PLN03200 414 TMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPL 493 (2102)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 556678888888888877743111 1112346899999999988999999999999887632211 2234678999
Q ss_pred HHhccCCcHHHHHHHHHHHHhhchhhCH-HH-H-HHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHH
Q 007918 323 KELSSDSSQHVRSALASVIMGMAPLLGK-DA-T-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 399 (585)
Q Consensus 323 ~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~-~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~ 399 (585)
.+++.+++.++|..++.++++++..-.. .. . ....+|.+..++++.++.++..|+.+|..+...-.. ..++.
T Consensus 494 V~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~-----~~I~~ 568 (2102)
T PLN03200 494 VQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA-----ATISQ 568 (2102)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-----hHHHH
Confidence 9999999999999999999999864211 11 1 235678889999999999999999999998764322 24466
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHHhhChhhHH------HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCH---HHH
Q 007918 400 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD------DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWA 470 (585)
Q Consensus 400 l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~------~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~ 470 (585)
+..++..++..++..++..++.+.......... ...+|.+.+++.+++..+++.|+.++..++..-.. ...
T Consensus 569 Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv 648 (2102)
T PLN03200 569 LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLA 648 (2102)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 778888888888888999988887654433211 24688999999999999999999999999873322 124
Q ss_pred HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHH----HHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH
Q 007918 471 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 546 (585)
Q Consensus 471 ~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~ 546 (585)
....+|.++.++++.+..+|..+..+++++........ .....+|.|.+++++++..++..++.+|..+.......
T Consensus 649 ~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~ 728 (2102)
T PLN03200 649 TDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVA 728 (2102)
T ss_pred HcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHH
Confidence 46789999999999999999999999999996433321 23567899999999999999999999999998765332
Q ss_pred --HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007918 547 --MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 547 --~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~ 580 (585)
......++.|.+++.+..+++|.+|++++..+++
T Consensus 729 ~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~ 764 (2102)
T PLN03200 729 AEALAEDIILPLTRVLREGTLEGKRNAARALAQLLK 764 (2102)
T ss_pred HHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHh
Confidence 3445678999999999999999999999998875
No 15
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.91 E-value=8.6e-20 Score=198.58 Aligned_cols=558 Identities=13% Similarity=0.129 Sum_probs=394.3
Q ss_pred cHHHHHHHhcChhHHHHHHHhhhHHHHHHhhC--hhh-hhhhccccccc-cc-CCchHHHHHHHHHHhccccccCCcchH
Q 007918 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALG--EER-TRKELIPFLSE-NN-DDDDEVLLAMAEELGVFIPYVGGVEHA 84 (585)
Q Consensus 10 ~i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~--~~~-~~~~l~~~l~~-~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~ 84 (585)
.+..+++.++++++..+..|+..+..++...+ .+. .....+|.+.+ +. ++++.+|..++.+|++++. +++++.
T Consensus 190 aVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs--~s~e~r 267 (2102)
T PLN03200 190 GVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSS--QSKEAK 267 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhc--CCHHHH
Confidence 47889999999999999999988877765432 111 23345777777 43 3466899999999999876 233332
Q ss_pred Hh-----chHHHhhhhhchh---------hHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCc-CccchhhHHhhh
Q 007918 85 HV-----LLPPLETLCTVEE---------TCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLF 149 (585)
Q Consensus 85 ~~-----l~~~l~~l~~~~~---------~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l 149 (585)
.. -+|.|..++..+. ...++.|.-+|+.++... ..++|++.++.++. +......++..+
T Consensus 268 ~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~------~~ll~~L~~ll~s~rd~~~~ada~gAL 341 (2102)
T PLN03200 268 QAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM------SALILYLGELSESPRSPAPIADTLGAL 341 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc------hhhHHHHHHhhcccchHHHHHHHHhhH
Confidence 22 3444554554333 345889999999999765 34777777776554 222223344555
Q ss_pred HhhcCCCCh---HHH----HHHHHHHHhhcCCCchH-HHHHHHHhHHHHHhhhcc--cchHHHHHHHHHHhccC--hhHH
Q 007918 150 HIAYPSAPD---ILK----TELRSIYTQLCQDDMPM-VRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQD--DSVR 217 (585)
Q Consensus 150 ~~~~~~~~~---~~~----~~l~~~l~~l~~d~~~~-vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d--~~vr 217 (585)
..+...++. ..+ ..+.+.+.+++.++++. ++..+..+|..++....- -.......+.+..++.. .+++
T Consensus 342 ayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ 421 (2102)
T PLN03200 342 AYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQ 421 (2102)
T ss_pred HHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHH
Confidence 555332221 111 23457788999887666 477777777553322100 01112334455566554 6799
Q ss_pred HHHHHHHHHHhhccCc---hhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhccCCh
Q 007918 218 LLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNE 291 (585)
Q Consensus 218 ~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~d~~ 291 (585)
..++.++..++..-.. .......+|.+.+++.+++..++..++..++.++..-.. .......+|.+.+++..++
T Consensus 422 ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~ 501 (2102)
T PLN03200 422 EELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGS 501 (2102)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC
Confidence 9999999998864222 112334688999999999999999999999988753221 1123478999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCHH---HH-HHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcC
Q 007918 292 AEVRIAAAGKVTKFCRILNPE---LA-IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD 367 (585)
Q Consensus 292 ~~vr~~a~~~l~~l~~~~~~~---~~-~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 367 (585)
..+++.|+.+++.++.. +.+ .+ ....+|.+.+++++.++++|..++.++.++...-..+ ..+.+..++..
T Consensus 502 ~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-----~I~~Lv~LLls 575 (2102)
T PLN03200 502 QKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-----TISQLTALLLG 575 (2102)
T ss_pred HHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-----HHHHHHHHhcC
Confidence 99999999999999863 211 12 2357888999999999999999999999997643322 23556677777
Q ss_pred CChHHHHHHHHHhHHhhhhhchhHH------hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhC---hhhHHHHHHHH
Q 007918 368 EFPDVRLNIISKLDQVNQVIGIDLL------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGAL 438 (585)
Q Consensus 368 ~~~~vr~~a~~~l~~l~~~~~~~~~------~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~~~~~l~~~ 438 (585)
.++.++..++..++.+......+.. ...-+|.+.+++++++..++..++.++..+...-. ........+|.
T Consensus 576 dd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpP 655 (2102)
T PLN03200 576 DLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINP 655 (2102)
T ss_pred CChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHH
Confidence 7889999999999988765443321 13468999999999999999999999998875321 22334556888
Q ss_pred HHHHccCCchHHHHHHHHHHHHHHHHhCHHH----HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChH--HHHhc
Q 007918 439 CMQWLQDKVYSIRDAAANNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--ITCSR 512 (585)
Q Consensus 439 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~--~~~~~ 512 (585)
+..++.+.+.+++..++.+|+.+......+. .....+|.+.+++++++..++..++.++.++....... .....
T Consensus 656 LV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~ 735 (2102)
T PLN03200 656 CIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAED 735 (2102)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcC
Confidence 9999999999999999999999986433321 23568999999999999999999999999998754322 23467
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHH------HHhhHHHHHHHhcCCCCccHHHH--HHHHHHHHHHh
Q 007918 513 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM------VEKTIRPCLVELTEDPDVDVRFF--ATQAIQSIDHV 581 (585)
Q Consensus 513 i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~------~~~~~~~~l~~l~~D~~~~Vr~~--a~~al~~l~~~ 581 (585)
.++.+..++.+.++.+|.+++++|..++...+..+ .....+..|..+++-.|.++-.. |..++..+.+.
T Consensus 736 ~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~ 812 (2102)
T PLN03200 736 IILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART 812 (2102)
T ss_pred cHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence 78999999999999999999999999998776443 22335566666666667776655 88888877764
No 16
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=8e-19 Score=166.58 Aligned_cols=520 Identities=16% Similarity=0.136 Sum_probs=369.0
Q ss_pred cccccc-ccCCchHHHHHHHHHHhccccccCCcchHHhchHHHhhhhh-chhhHHHHHHHHHHHHHHhhcChhhHH-hhH
Q 007918 50 IPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRESDLV-DWY 126 (585)
Q Consensus 50 ~~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~-~~l 126 (585)
++++.. -.|..+.||..+.++.......- +.+....+.|...+.++ +.+..+|++...--+.++......+.. ..+
T Consensus 19 ~~~~~~~g~d~~~~v~~~ml~a~~~~~~~~-~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~ 97 (569)
T KOG1242|consen 19 LLFLVSAGEDRRIDVRGNMLEAGEAAINQH-GDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISI 97 (569)
T ss_pred ceeecccCCCcchhhHHhHHHHHHHHHHhh-hHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHH
Confidence 556554 56667788888777765544432 35667778888888665 457788888777777776665443222 123
Q ss_pred HHHHHHhhcCcCccchhhHHhhhHhhcCCCChHHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccc-hHHHHHH
Q 007918 127 IPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH-LKTDIMS 205 (585)
Q Consensus 127 ~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~ 205 (585)
+..+.+-..-+...+|.+...++..............+.+.+.++++.....-|+.++..+..+....+.+. ....++.
T Consensus 98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~ 177 (569)
T KOG1242|consen 98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLD 177 (569)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHH
Confidence 333333334456777877777776665555555566677777777777778888888888888877654433 2344556
Q ss_pred HHHHhccC---hhHHHHHHHHHHHHhhccCc--hhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchH
Q 007918 206 IFEDLTQD---DSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV 280 (585)
Q Consensus 206 ~l~~l~~d---~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~ 280 (585)
.+.+..+| ...|+.+..+.......+++ +.+.-.++|.+...+.|....||.++..+...+...+.....+ .++
T Consensus 178 ~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK-~ll 256 (569)
T KOG1242|consen 178 NLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK-LLL 256 (569)
T ss_pred HHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh-Hhh
Confidence 66666777 23666666666666666664 4555667777777888999999999999999888887665543 455
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHH
Q 007918 281 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 358 (585)
Q Consensus 281 ~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 358 (585)
|.++.-+.+..|.-..++++.++.++...+.. ...+.++|.+.+.+.|..++||.++..++..++....... .+.+.
T Consensus 257 psll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~~i 335 (569)
T KOG1242|consen 257 PSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKII 335 (569)
T ss_pred hhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHH
Confidence 55555554558999999999999887765544 4567899999999999999999999999999998877554 57788
Q ss_pred HHHHHhhcCCChHHHHHHHHHhHH--hhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhC-h---hhHH
Q 007918 359 PIFLSLLKDEFPDVRLNIISKLDQ--VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-V---GFFD 432 (585)
Q Consensus 359 ~~l~~~l~d~~~~vr~~a~~~l~~--l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~-~---~~~~ 432 (585)
|.+...+.|++..+... +..|+. ++..+....+ ..++|.+..-+.+.+...+..++..++.++.... + ..+.
T Consensus 336 p~Lld~l~dp~~~~~e~-~~~L~~ttFV~~V~~psL-almvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl 413 (569)
T KOG1242|consen 336 PTLLDALADPSCYTPEC-LDSLGATTFVAEVDAPSL-ALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL 413 (569)
T ss_pred HHHHHHhcCcccchHHH-HHhhcceeeeeeecchhH-HHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhH
Confidence 99999999987555332 233222 2222222222 5678888888888888888888888888888773 2 2345
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCc-chHHHHHHHHHHHHhhhhcChHHHHh
Q 007918 433 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGSEITCS 511 (585)
Q Consensus 433 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~-~~~~R~~a~~~l~~l~~~~~~~~~~~ 511 (585)
+.++|-+...+.|..++||.-+..+|+.+.+.+|...+ +...|.+.+..++. ....|..+.+.++.+....+-+. ..
T Consensus 414 ~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~-~~ 491 (569)
T KOG1242|consen 414 PSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEK-VE 491 (569)
T ss_pred HHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchH-HH
Confidence 66778888888999999999999999999999998766 77899999888766 46789999999999998888764 46
Q ss_pred cHHHHHHhhcCC--CCchHHHHHHHHHHHHHhhhch--HHHHhhHHHHHHHhcCCCCccHHHHHHHHHH
Q 007918 512 RLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQ--SMVEKTIRPCLVELTEDPDVDVRFFATQAIQ 576 (585)
Q Consensus 512 ~i~~~l~~~l~d--~~~~vR~~~~~~l~~l~~~~~~--~~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~ 576 (585)
.++|.++..... .++.+|....+.+..+-...+. +.+...+++.+.+-+.|.|+.+|..+.++=+
T Consensus 492 ~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~~~~ 560 (569)
T KOG1242|consen 492 DILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALEAGE 560 (569)
T ss_pred HHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhhhhh
Confidence 666666655443 3556888877777665433333 2445566666666666889998888776533
No 17
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.88 E-value=2.8e-19 Score=183.43 Aligned_cols=502 Identities=18% Similarity=0.178 Sum_probs=289.7
Q ss_pred HHHHHhcCh--hHHHHHHHhhhHHHHHHhhChhhhhhhccccccc-ccCCchHHHHHHHHHHhccccccCCcchHHhchH
Q 007918 13 VLIDELKND--DIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP 89 (585)
Q Consensus 13 ~l~~~l~~~--~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 89 (585)
++.+.+.+. +...|..++..+-.+ ...|.+.. .+.+.+.. +..++.+.++.+--.+..+.. .+++......+
T Consensus 8 el~~~~~~~~~~~~~~~~~l~kli~~-~~~G~~~~--~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~--~~~~~~~l~~n 82 (526)
T PF01602_consen 8 ELAKILNSFKIDISKKKEALKKLIYL-MMLGYDIS--FLFMEVIKLISSKDLELKRLGYLYLSLYLH--EDPELLILIIN 82 (526)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHHHH-HHTT---G--STHHHHHCTCSSSSHHHHHHHHHHHHHHTT--TSHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHH-HHcCCCCc--hHHHHHHHHhCCCCHHHHHHHHHHHHHHhh--cchhHHHHHHH
Confidence 344444555 888888888766654 24554322 34444444 556777877766666666654 24455666777
Q ss_pred HHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChHHHHHHHHHHH
Q 007918 90 PLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYT 169 (585)
Q Consensus 90 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~ 169 (585)
.+.+=+.++++.+|-.|.++++.++ ...+.+.+.+.+.++..++++.+|..|+..+..++...++.....+.+.+.
T Consensus 83 ~l~kdl~~~n~~~~~lAL~~l~~i~----~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~ 158 (526)
T PF01602_consen 83 SLQKDLNSPNPYIRGLALRTLSNIR----TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLK 158 (526)
T ss_dssp HHHHHHCSSSHHHHHHHHHHHHHH-----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHH
T ss_pred HHHHhhcCCCHHHHHHHHhhhhhhc----ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 7888888999999999999998876 445667788888999999999999999999988887654433222788888
Q ss_pred hhcCCCchHHHHHHHHhHHHHHhhhccc--chHHHHHHHHHHhccC--hhHHHHHHHHHHHHhhccCchhhhhhhHHHHH
Q 007918 170 QLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEPQDCVAHILPVIV 245 (585)
Q Consensus 170 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 245 (585)
+++.|+++.|+.+|+.++..+ +..+.. ...+.+.+.+.++..+ +..+...+..+..++...+.......+++.+.
T Consensus 159 ~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~ 237 (526)
T PF01602_consen 159 QLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLL 237 (526)
T ss_dssp HHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHH
T ss_pred hhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHH
Confidence 999999999999999998888 211111 3344445555554444 55777777766665543222211145666666
Q ss_pred HhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHh
Q 007918 246 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL 325 (585)
Q Consensus 246 ~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~ 325 (585)
.++++.++.|...++.++..+.. ........++.+..++.++++++|..+++.+..++... +..+ ......+..+
T Consensus 238 ~~l~s~~~~V~~e~~~~i~~l~~---~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~-~~~v-~~~~~~~~~l 312 (526)
T PF01602_consen 238 NLLQSSSPSVVYEAIRLIIKLSP---SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN-PPAV-FNQSLILFFL 312 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSS---SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC-HHHH-GTHHHHHHHH
T ss_pred HHhhccccHHHHHHHHHHHHhhc---chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc-chhh-hhhhhhhhee
Confidence 66667777777766666654322 11123456667777777777777777777777776553 1111 1111222233
Q ss_pred ccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCC-ChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHh
Q 007918 326 SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA 404 (585)
Q Consensus 326 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~ 404 (585)
..+++..+|..++..+..++.. .....+++.+...+.+. ++++|..++.+++.++....... +..++.+.+++
T Consensus 313 ~~~~d~~Ir~~~l~lL~~l~~~----~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~--~~~v~~l~~ll 386 (526)
T PF01602_consen 313 LYDDDPSIRKKALDLLYKLANE----SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDA--EWYVDTLLKLL 386 (526)
T ss_dssp HCSSSHHHHHHHHHHHHHH--H----HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSH--HHHHHHHHHHH
T ss_pred cCCCChhHHHHHHHHHhhcccc----cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchH--HHHHHHHHHhh
Confidence 3366677777777777666542 23344555566666433 55677777777777766554321 34555666666
Q ss_pred cCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccC-CchHHHHHHHHHHHHHHHHhCH-HHHHhhhHHHHHhhh
Q 007918 405 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGP-EWAMQHITPQVLEMI 482 (585)
Q Consensus 405 ~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~-~~~~~~ll~~l~~~l 482 (585)
...+..+...++..+..+....+.. ....+..+...+.+ ...+++..++..+|.++..... + ....++..+.+.+
T Consensus 387 ~~~~~~~~~~~~~~i~~ll~~~~~~--~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~~~~ 463 (526)
T PF01602_consen 387 EISGDYVSNEIINVIRDLLSNNPEL--REKILKKLIELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILRSLIENF 463 (526)
T ss_dssp HCTGGGCHCHHHHHHHHHHHHSTTT--HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHHHHH
T ss_pred hhccccccchHHHHHHHHhhcChhh--hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHHHhh
Confidence 6555555555555555554432211 22334444444433 3445555666666655544432 1 2233444444444
Q ss_pred cCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcC--CCCchHHHHHHHHHHH
Q 007918 483 NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK--DRVPNIKFNVAKVLQS 538 (585)
Q Consensus 483 ~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~--d~~~~vR~~~~~~l~~ 538 (585)
.+.+..+|...+.++..+....+.....+.+.+.+..+.+ +.+++||..+...+.-
T Consensus 464 ~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~l 521 (526)
T PF01602_consen 464 IEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLRL 521 (526)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 4444455555555555555444332233344555555554 4455555555544433
No 18
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1e-18 Score=165.92 Aligned_cols=509 Identities=17% Similarity=0.171 Sum_probs=359.7
Q ss_pred cChhHHHHHHHhhhHHHHHHhhChhhhhhhccccccc-ccC-CchHHHHHHHHHHhccccccCCcc-hHHhchHHHhhhh
Q 007918 19 KNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NND-DDDEVLLAMAEELGVFIPYVGGVE-HAHVLLPPLETLC 95 (585)
Q Consensus 19 ~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d-~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~l~ 95 (585)
++.....|..-++.....-..=| .+....+.|...+ ++. .++.+|....-.-|.++.+....+ ....++..+..-+
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~-~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~ 105 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHG-DQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEEL 105 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhh-HHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhc
Confidence 34555566555554443322223 2233357777766 332 366777777666676666554322 2233333344444
Q ss_pred hchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChH--HHHHHHHHHHhhcC
Q 007918 96 TVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--LKTELRSIYTQLCQ 173 (585)
Q Consensus 96 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--~~~~l~~~l~~l~~ 173 (585)
+.+.+.+|.+...++..+.-.... .-...+.+.+.++.+......|..++..+..+..+.+.. ....++.-+.....
T Consensus 106 ~tps~~~q~~~~~~l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~ 184 (569)
T KOG1242|consen 106 DTPSKSVQRAVSTCLPPLVVLSKG-LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAII 184 (569)
T ss_pred CCCcHHHHHHHHHHhhhHHHHhhc-cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhc
Confidence 567899999998888887554432 233456677777777666677888888888887777664 45567777788888
Q ss_pred CCchHHHH-HHHHhHHHHHhhhcccchHHHHHHHHHH---hccC--hhHHHHHHHHHHHHhhccCchhhhhhhHHHHHHh
Q 007918 174 DDMPMVRR-SAASNLGKFAATVEPAHLKTDIMSIFED---LTQD--DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNF 247 (585)
Q Consensus 174 d~~~~vr~-~a~~~l~~l~~~~~~~~~~~~l~~~l~~---l~~d--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~ 247 (585)
|.....++ .+..+.......+++ ...+++.|++-. ...| ..||.++..+...+...++.......+.+.+..+
T Consensus 185 dk~~~~~re~~~~a~~~~~~~Lg~-~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l 263 (569)
T KOG1242|consen 185 DKKSALNREAALLAFEAAQGNLGP-PFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSL 263 (569)
T ss_pred ccchhhcHHHHHHHHHHHHHhcCC-CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHH
Confidence 87655544 677777777777763 344444444433 3444 6699999999999999988766444444455555
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHh
Q 007918 248 SQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL 325 (585)
Q Consensus 248 ~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~ 325 (585)
..+ .|+.+.++++.++.++...+... ....++|.+.+.+.|..++||+++.+++..++.......+ ..++|.+.+.
T Consensus 264 ~~~-kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI-~~~ip~Lld~ 341 (569)
T KOG1242|consen 264 LEA-KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI-QKIIPTLLDA 341 (569)
T ss_pred HHH-hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH-HHHHHHHHHH
Confidence 555 99999999999999998876643 3457999999999999999999999999999998877664 7788999999
Q ss_pred ccCCcHHHHHHHHHHHH-hhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhc-hh---HHhhhHHHHH
Q 007918 326 SSDSSQHVRSALASVIM-GMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-ID---LLSQSLLPAI 400 (585)
Q Consensus 326 ~~d~~~~vr~~a~~~l~-~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~---~~~~~ll~~l 400 (585)
+.|++.++....-.... .|...+. +.....++|.+...+.+.+...+..++..++.++.... +. .+.+.++|.+
T Consensus 342 l~dp~~~~~e~~~~L~~ttFV~~V~-~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~l 420 (569)
T KOG1242|consen 342 LADPSCYTPECLDSLGATTFVAEVD-APSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGL 420 (569)
T ss_pred hcCcccchHHHHHhhcceeeeeeec-chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHH
Confidence 99998666554322211 1333332 24567899999999999999999999999999998873 22 3446778888
Q ss_pred HHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchH-HHHHHHHHHHHHHHHhCHHHHHhhhHHHHH
Q 007918 401 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYS-IRDAAANNLKRLAEEFGPEWAMQHITPQVL 479 (585)
Q Consensus 401 ~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~ 479 (585)
...+.+..+.+|..+..+++.+.+..|...+ +...|.+...+.+.... -|..+...++.++..++.+. ...++|.+.
T Consensus 421 k~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~-~~~~~~~~~ 498 (569)
T KOG1242|consen 421 KENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEK-VEDILPEIL 498 (569)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchH-HHHHHHHHH
Confidence 8888899999999999999999999998777 66788888877665544 46677888888888888764 345666666
Q ss_pred hhhc--CcchHHHHHHHHHHHHhhhhcChH--HHHhcHHHHHHhhcCCCCchHHHHHHHH
Q 007918 480 EMIN--NPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKV 535 (585)
Q Consensus 480 ~~l~--~~~~~~R~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~l~d~~~~vR~~~~~~ 535 (585)
.... ...+.+|...+..+.-+...++.. .+...+++.+.+.+.|.++.+|..+.+.
T Consensus 499 a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~~ 558 (569)
T KOG1242|consen 499 ANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALEA 558 (569)
T ss_pred HHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhhh
Confidence 5433 345678888887776665544443 3567788888888889999888776654
No 19
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.87 E-value=1.7e-18 Score=177.77 Aligned_cols=472 Identities=15% Similarity=0.137 Sum_probs=350.9
Q ss_pred HhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChHHHHHH
Q 007918 85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL 164 (585)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l 164 (585)
....+.+..++.+++...|..+--.+..+....++ ..-.....+.+-+.++++.+|..|...++.+. .++..+.+
T Consensus 41 ~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~--~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~~l 115 (526)
T PF01602_consen 41 SFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE--LLILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAEPL 115 (526)
T ss_dssp GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH--HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHHHH
T ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh--HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhhHH
Confidence 35566666777799999998888888777654443 23334555556667788899999999998877 56778889
Q ss_pred HHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC--hhHHHHHHHHHHHHhhccCch---hhhhh
Q 007918 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEPQ---DCVAH 239 (585)
Q Consensus 165 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~~---~~~~~ 239 (585)
.+.+.+++.|+++.||+.|+.++.++....+ +.....+.+.+.+++.| +.|+..|+..+..+ ..+++ ...+.
T Consensus 116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p-~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~ 192 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDP-DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPK 192 (526)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH-CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHH
Confidence 9999999999999999999999999998753 33222278888888877 56999999998888 23332 23444
Q ss_pred hHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccc--cchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHh
Q 007918 240 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR--MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH 317 (585)
Q Consensus 240 ~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 317 (585)
+...+.+.+.+.++-.+...++.+..++..- .... ..+++.+..++.+.++.|...+++.+..+... ......
T Consensus 193 ~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~--~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~---~~~~~~ 267 (526)
T PF01602_consen 193 LIRILCQLLSDPDPWLQIKILRLLRRYAPME--PEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS---PELLQK 267 (526)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS---HHHHHH
T ss_pred HHHHhhhcccccchHHHHHHHHHHHhcccCC--hhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc---hHHHHh
Confidence 5555566667888888888887777554321 1112 35788888888888899999988888866442 234577
Q ss_pred hHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHH
Q 007918 318 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 397 (585)
Q Consensus 318 i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll 397 (585)
+++.+..++.++++.+|..++..+..++...++.. ......+..+..+++..+|..++..+..++..-.. +.++
T Consensus 268 ~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v--~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~----~~Il 341 (526)
T PF01602_consen 268 AINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAV--FNQSLILFFLLYDDDPSIRKKALDLLYKLANESNV----KEIL 341 (526)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHH--GTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHH----HHHH
T ss_pred hHHHHHHHhhcccchhehhHHHHHHHhhcccchhh--hhhhhhhheecCCCChhHHHHHHHHHhhcccccch----hhHH
Confidence 88899999999999999999999999987762222 23333344445588899999999998888753222 4577
Q ss_pred HHHHHHhcC-CChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHH
Q 007918 398 PAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP 476 (585)
Q Consensus 398 ~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~ 476 (585)
+.+...+.+ .+..+|..++..++.++....+. .+..++.+.+++......+...++..+..+....... .+.++.
T Consensus 342 ~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~--~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~--~~~~l~ 417 (526)
T PF01602_consen 342 DELLKYLSELSDPDFRRELIKAIGDLAEKFPPD--AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL--REKILK 417 (526)
T ss_dssp HHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS--HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT--HHHHHH
T ss_pred HHHHHHHHhccchhhhhhHHHHHHHHHhccCch--HHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhh--hHHHHH
Confidence 777777744 47889999999999999877543 4557788888988888888888888888887754332 345677
Q ss_pred HHHhhhcC-cchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHH
Q 007918 477 QVLEMINN-PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPC 555 (585)
Q Consensus 477 ~l~~~l~~-~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~ 555 (585)
.+.+.+.+ .....+.++++.+|..+...+.......++..+.+...+.++.||..++.++.++....+.....+.+.+.
T Consensus 418 ~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~ 497 (526)
T PF01602_consen 418 KLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQF 497 (526)
T ss_dssp HHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHH
Confidence 77777665 45778999999999999877651145677788888888888999999999999999887765556688888
Q ss_pred HHHhcC--CCCccHHHHHHHHHHHHH
Q 007918 556 LVELTE--DPDVDVRFFATQAIQSID 579 (585)
Q Consensus 556 l~~l~~--D~~~~Vr~~a~~al~~l~ 579 (585)
+..+.. |.+.+||..|...+.-+.
T Consensus 498 ~~~~~~~~s~~~evr~Ra~~y~~ll~ 523 (526)
T PF01602_consen 498 LLSLATEDSSDPEVRDRAREYLRLLN 523 (526)
T ss_dssp HHCHHHHS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHc
Confidence 888777 889999999998877654
No 20
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.86 E-value=6.1e-17 Score=158.99 Aligned_cols=519 Identities=15% Similarity=0.137 Sum_probs=347.5
Q ss_pred ccCCchHHHHHHHHHHh-cccc---ccCCcchHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHH
Q 007918 56 NNDDDDEVLLAMAEELG-VFIP---YVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVK 131 (585)
Q Consensus 56 ~~d~~~~vr~~~~~~l~-~l~~---~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 131 (585)
...++-+.|-.+..-|- .+-. .+. .+....+...+.++++|.+.+|...|+++++-+...++.+++...+-.+..
T Consensus 14 mtssDKDfRfMAtsDLm~eLqkdsi~Ld-~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~ 92 (1233)
T KOG1824|consen 14 MTSSDKDFRFMATSDLMTELQKDSIKLD-DDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCS 92 (1233)
T ss_pred ccCCCcchhhhhHHHHHHHHHhhhhhcc-ccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhh
Confidence 34444556665555442 2211 122 233455677888899999999999999999999999988877666555555
Q ss_pred HhhcCcCccchhhHHh----hhHhhcC----CCChHHHHHHHHHHHhhcC--CCchHHHHHHHHhHHHHHhhhcc--cch
Q 007918 132 RLAAGEWFTARVSACG----LFHIAYP----SAPDILKTELRSIYTQLCQ--DDMPMVRRSAASNLGKFAATVEP--AHL 199 (585)
Q Consensus 132 ~l~~~~~~~~r~~a~~----~l~~~~~----~~~~~~~~~l~~~l~~l~~--d~~~~vr~~a~~~l~~l~~~~~~--~~~ 199 (585)
++..++. ..|-.... .++++.+ ++.+...+.+.+.+.+... .+...+|-.++..++.+...+|. ..+
T Consensus 93 ~~~s~ke-q~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~f 171 (1233)
T KOG1824|consen 93 NMLSGKE-QLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNF 171 (1233)
T ss_pred hhccchh-hhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcch
Confidence 5554442 22333222 2333333 2334466777777776653 34456888888888888777654 224
Q ss_pred HHHHHHHHHHhccC--hhHHHHHHHHHHHHhhccCchhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCccc--
Q 007918 200 KTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-- 275 (585)
Q Consensus 200 ~~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~-- 275 (585)
...++..+.--++. ..||+.++.+++.++...+...+...+...+..+.+..+...-+..+++++.++...|....
T Consensus 172 h~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h 251 (1233)
T KOG1824|consen 172 HLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSH 251 (1233)
T ss_pred HHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcc
Confidence 44444444433344 55999999999999999988877777777777777777777777889999999999887544
Q ss_pred ccchHHHHHHhc---cCChHHHHHHHHHHHHHHHHhhCHHH--HHHhhHHHHHHhc------------------------
Q 007918 276 RMDLVPAYVRLL---RDNEAEVRIAAAGKVTKFCRILNPEL--AIQHILPCVKELS------------------------ 326 (585)
Q Consensus 276 ~~~l~~~l~~ll---~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~~------------------------ 326 (585)
...++|.+.+.+ +..+.+.|+.++++++.+....+.+. +.++++......+
T Consensus 252 ~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eD 331 (1233)
T KOG1824|consen 252 LDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEED 331 (1233)
T ss_pred cchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhcccc
Confidence 347889888888 66778999999999999988776552 2233333332221
Q ss_pred ----------cCCcHHHHHHHHHHHHhhchhhCH--HHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhch-----
Q 007918 327 ----------SDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI----- 389 (585)
Q Consensus 327 ----------~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----- 389 (585)
.|-+|.||+++++++..+...... ..+.+.+-|.+..-+++.+++|+.....++-.+....++
T Consensus 332 de~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~ 411 (1233)
T KOG1824|consen 332 DEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVL 411 (1233)
T ss_pred chhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccc
Confidence 123599999999999887654321 234567788888899999999998888776666544321
Q ss_pred -----------h---HH----hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChh--hHHHHHHHHHHHHccCCc--
Q 007918 390 -----------D---LL----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKV-- 447 (585)
Q Consensus 390 -----------~---~~----~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~-- 447 (585)
. .+ ...++..+.+.++++.-+.|..++..+..+....+.. .....++|.+...+.|.+
T Consensus 412 ~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSss 491 (1233)
T KOG1824|consen 412 ADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSS 491 (1233)
T ss_pred cCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccch
Confidence 0 11 1234445555566666678888888888887665321 223457788888888765
Q ss_pred hHHHHHHHHHHHHHHHHhCHHHHH---hhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhc---------ChHHHHhcHHH
Q 007918 448 YSIRDAAANNLKRLAEEFGPEWAM---QHITPQVLEMINNPHYLYRMTILRAISLLAPVM---------GSEITCSRLLP 515 (585)
Q Consensus 448 ~~vr~~a~~~l~~l~~~~~~~~~~---~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~---------~~~~~~~~i~~ 515 (585)
.+.+..++..+......-+++.|. ..+.|.+.....|+-+.+-.-|+..+..+++.+ +...+...++.
T Consensus 492 s~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~ 571 (1233)
T KOG1824|consen 492 SNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYD 571 (1233)
T ss_pred HHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHH
Confidence 466777777776666656666553 556667777788999999988888888887643 33334555555
Q ss_pred HHHhhc--CCCCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHH-hcCCCCccHHHHHHHHHHHHH
Q 007918 516 VVINAS--KDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVE-LTEDPDVDVRFFATQAIQSID 579 (585)
Q Consensus 516 ~l~~~l--~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~-l~~D~~~~Vr~~a~~al~~l~ 579 (585)
..++.+ +|.+.+||..++.++|.++..+++. ...+.++|.+.. +- +.--|..|.+|+-.|.
T Consensus 572 ~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~---nEiTRl~AvkAlt~Ia 637 (1233)
T KOG1824|consen 572 CTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG---NEITRLTAVKALTLIA 637 (1233)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh---chhHHHHHHHHHHHHH
Confidence 555554 4678899999999999999888743 233445554443 32 3345778888876654
No 21
>PRK09687 putative lyase; Provisional
Probab=99.85 E-value=3.9e-19 Score=161.60 Aligned_cols=254 Identities=19% Similarity=0.179 Sum_probs=196.4
Q ss_pred hHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHH
Q 007918 279 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 358 (585)
Q Consensus 279 l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 358 (585)
-.+.+..++.|++..||..++..|..+.. +.+++.+..++.|+++.+|..++..|+.+...-. .....+
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~---~~~~a~ 92 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR---CQDNVF 92 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc---chHHHH
Confidence 35566777789899999999988887642 4456777778888999999999999998764211 023456
Q ss_pred HHHHHh-hcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHH
Q 007918 359 PIFLSL-LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 437 (585)
Q Consensus 359 ~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~ 437 (585)
|.+..+ ++|+++.||..|+.+|+.+...-.. .....++.+...+.|++|+||..++.+++.+ +. +..++
T Consensus 93 ~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~--~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----~~----~~ai~ 162 (280)
T PRK09687 93 NILNNLALEDKSACVRASAINATGHRCKKNPL--YSPKIVEQSQITAFDKSTNVRFAVAFALSVI----ND----EAAIP 162 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcccccccc--cchHHHHHHHHHhhCCCHHHHHHHHHHHhcc----CC----HHHHH
Confidence 667655 7888999999999999987532111 1134556667778899999999999998654 22 34678
Q ss_pred HHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHH
Q 007918 438 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV 517 (585)
Q Consensus 438 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l 517 (585)
.+...+.|+++.||..|+.+||.+. .+ .+...+.+...+.|+++.+|..|+.+++.+.. ...+|.|
T Consensus 163 ~L~~~L~d~~~~VR~~A~~aLg~~~--~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--------~~av~~L 228 (280)
T PRK09687 163 LLINLLKDPNGDVRNWAAFALNSNK--YD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--------KRVLSVL 228 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcCC--CC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--------hhHHHHH
Confidence 8889999999999999999999881 11 23577888889999999999999999988654 5778999
Q ss_pred HhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcC-CCCccHHHHHHHHHHH
Q 007918 518 INASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTE-DPDVDVRFFATQAIQS 577 (585)
Q Consensus 518 ~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~-D~~~~Vr~~a~~al~~ 577 (585)
++.+++++ +|..++.++|.+.. +..+|.|.+++. ++|..|+..|.+++..
T Consensus 229 i~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 229 IKELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 99998865 78889999999854 368899998775 8899999999998865
No 22
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.84 E-value=3.1e-15 Score=139.51 Aligned_cols=557 Identities=14% Similarity=0.106 Sum_probs=354.7
Q ss_pred hHHHHHHHhhhHHHHHHhhChhhhhhh----ccccccc--ccCCchHHHHHHHHHHhcccccc----CCcchHHhchHHH
Q 007918 22 DIQLRLNSIRRLSTIARALGEERTRKE----LIPFLSE--NNDDDDEVLLAMAEELGVFIPYV----GGVEHAHVLLPPL 91 (585)
Q Consensus 22 ~~~~R~~a~~~l~~~~~~~~~~~~~~~----l~~~l~~--~~d~~~~vr~~~~~~l~~l~~~~----~~~~~~~~l~~~l 91 (585)
......+++..++-.+....|+...+. +...+.. -++.+..||.++..+|.+-...+ ..++....+++..
T Consensus 147 p~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvv 226 (858)
T COG5215 147 PVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVV 226 (858)
T ss_pred chHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheee
Confidence 344455556666666655555433221 1122222 23455567777777775421111 1233455677777
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHhhcCh---hhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCC----------CCh
Q 007918 92 ETLCTVEETCVRDKAVESLCRIGSQMRE---SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS----------APD 158 (585)
Q Consensus 92 ~~l~~~~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~----------~~~ 158 (585)
....+.+|.++..++.-++.++..-.-. .-..+.+-.+..+..++++..+...+....+.+++. +++
T Consensus 227 ceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe 306 (858)
T COG5215 227 CEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPE 306 (858)
T ss_pred ehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhccc
Confidence 7777888888888888888887653221 122344555566677888888888888777665431 110
Q ss_pred ----------HHHHHHHHHHHhhcC-------CCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC--hhHHHH
Q 007918 159 ----------ILKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD--DSVRLL 219 (585)
Q Consensus 159 ----------~~~~~l~~~l~~l~~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d--~~vr~~ 219 (585)
.....++|.+++++. +++|.+.++|..+|.-+++..++... ..++.++++-++. +..|..
T Consensus 307 ~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~-~pVl~FvEqni~~~~w~nrea 385 (858)
T COG5215 307 VPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIM-RPVLGFVEQNIRSESWANREA 385 (858)
T ss_pred CchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhH-HHHHHHHHHhccCchhhhHHH
Confidence 124567777777763 35788999999999999888765444 4477777776655 669999
Q ss_pred HHHHHHHHhhccCc---hhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHH----HHHHhccCChH
Q 007918 220 AVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVP----AYVRLLRDNEA 292 (585)
Q Consensus 220 a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~----~l~~ll~d~~~ 292 (585)
++-+++.+...-.. -.+.+..+|.+.....|+.-.|+..++.+++.++..+.....+..-++ .....+.|. +
T Consensus 386 avmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~-p 464 (858)
T COG5215 386 AVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDC-P 464 (858)
T ss_pred HHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhcc-c
Confidence 99999998875333 245677888899999999999999999999999998876555543222 222224443 6
Q ss_pred HHHHHHHHHHHHHHHhhCHHH---------HHHhhHHHHHHh--ccCCcHHHHHHHHHHHHhhchhhCHHH--H----HH
Q 007918 293 EVRIAAAGKVTKFCRILNPEL---------AIQHILPCVKEL--SSDSSQHVRSALASVIMGMAPLLGKDA--T----IE 355 (585)
Q Consensus 293 ~vr~~a~~~l~~l~~~~~~~~---------~~~~i~~~l~~~--~~d~~~~vr~~a~~~l~~l~~~~~~~~--~----~~ 355 (585)
.+...+.+....+..++.+.. +...++..+... ..+.+...|.++..+++.+....+... . .+
T Consensus 465 ~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~ 544 (858)
T COG5215 465 FRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYD 544 (858)
T ss_pred hHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 666777777777777665431 112233333221 225667789999999999877665321 1 11
Q ss_pred hH-------HHHHHHhhc--CC--ChHHHHHHHHHhHHhhhhhch--hHHhhhHHHHHHHHhcCCCh-HHHHHHHHHhHH
Q 007918 356 QL-------LPIFLSLLK--DE--FPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHW-RVRLAIIEYIPL 421 (585)
Q Consensus 356 ~l-------~~~l~~~l~--d~--~~~vr~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~~~~~-~~r~~~~~~l~~ 421 (585)
.+ +....+.+. |. ..++..+.+..|..+....++ +...+.++..+..+++..++ -+-..+..+++.
T Consensus 545 ~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsa 624 (858)
T COG5215 545 YTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISA 624 (858)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHH
Confidence 11 111111111 11 246667777777777777765 45556688888888877643 455667778888
Q ss_pred HHHhhChhh--HHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhcCcc--hHHHHHHHH
Q 007918 422 LASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPH--YLYRMTILR 495 (585)
Q Consensus 422 l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~~~~--~~~R~~a~~ 495 (585)
++..++..+ +.+.++|.+.+.+...+..|-..|+..++.++..+|.++ +.+.+...+.+.+++++ ..++-+.+.
T Consensus 625 l~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLS 704 (858)
T COG5215 625 LSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILS 704 (858)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHH
Confidence 888776543 567899999999999999999999999999999999876 45778888888888874 568889999
Q ss_pred HHHHhhhhcChHH--HHhcHHHHHHhhcCC-C------CchHHHHHHHHH----HHHHhhhc--hHHHHh---hHHHHHH
Q 007918 496 AISLLAPVMGSEI--TCSRLLPVVINASKD-R------VPNIKFNVAKVL----QSLIPIVD--QSMVEK---TIRPCLV 557 (585)
Q Consensus 496 ~l~~l~~~~~~~~--~~~~i~~~l~~~l~d-~------~~~vR~~~~~~l----~~l~~~~~--~~~~~~---~~~~~l~ 557 (585)
+++.|+-.+|.++ +.+.++-.+....+- + ..+.|.++...+ ..|..... ...+.+ .+...+.
T Consensus 705 vFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~ 784 (858)
T COG5215 705 VFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISIFHKIG 784 (858)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHHHHHH
Confidence 9999999888764 566666666655432 2 122344444433 33333332 122223 3334444
Q ss_pred HhcCCCCccHHHHHHHHHHHHHHh
Q 007918 558 ELTEDPDVDVRFFATQAIQSIDHV 581 (585)
Q Consensus 558 ~l~~D~~~~Vr~~a~~al~~l~~~ 581 (585)
....||+-. ......+++-|+.+
T Consensus 785 ~iaeDp~~s-e~~traalGLigDl 807 (858)
T COG5215 785 MIAEDPNGS-EAHTRAALGLIGDL 807 (858)
T ss_pred HhhcCCccc-hhHHHHHHHHHHHH
Confidence 456777651 23334566655544
No 23
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.84 E-value=8.6e-19 Score=187.01 Aligned_cols=275 Identities=22% Similarity=0.258 Sum_probs=220.9
Q ss_pred hHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhH
Q 007918 240 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL 319 (585)
Q Consensus 240 ~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~ 319 (585)
.++.+...+.|+++.||..+++.|+.+. ....++.+...++|+++.||..++.+|..+....+. .
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~ 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------A 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------h
Confidence 4566778889999999999999998764 345788899999999999999999999988654332 2
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHH
Q 007918 320 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 399 (585)
Q Consensus 320 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~ 399 (585)
+.+...++++++.||..++.+|+.+... . ...+...+.|+++.||..|+.+|+.+.. .+.
T Consensus 687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~~--~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~ 746 (897)
T PRK13800 687 PALRDHLGSPDPVVRAAALDVLRALRAG--D-------AALFAAALGDPDHRVRIEAVRALVSVDD-----------VES 746 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhccC--C-------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHH
Confidence 4556667889999999999999887521 1 1245678899999999999999998632 133
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHH
Q 007918 400 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL 479 (585)
Q Consensus 400 l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~ 479 (585)
+...+.|+++.+|..++..|+.+...-. ...+.+..++.|+++.||.+|+.+|+.+.. . +.+.+.+.
T Consensus 747 l~~~l~D~~~~VR~~aa~aL~~~~~~~~------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~----~---~~~~~~l~ 813 (897)
T PRK13800 747 VAGAATDENREVRIAVAKGLATLGAGGA------PAGDAVRALTGDPDPLVRAAALAALAELGC----P---PDDVAAAT 813 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhccccc------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCC----c---chhHHHHH
Confidence 5668899999999999999987743211 125778889999999999999999988732 1 23445678
Q ss_pred hhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHh
Q 007918 480 EMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 559 (585)
Q Consensus 480 ~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l 559 (585)
..+.|++|.+|..|+.+|+.+.. +..++.|..+++|+++.||..++.+|+.+. + .+...+.|...
T Consensus 814 ~aL~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~----~~~a~~~L~~a 878 (897)
T PRK13800 814 AALRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRWP---G----DPAARDALTTA 878 (897)
T ss_pred HHhcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---C----CHHHHHHHHHH
Confidence 88999999999999999987653 455689999999999999999999999961 1 13577888898
Q ss_pred cCCCCccHHHHHHHHHHH
Q 007918 560 TEDPDVDVRFFATQAIQS 577 (585)
Q Consensus 560 ~~D~~~~Vr~~a~~al~~ 577 (585)
++|.|++||..|.++|..
T Consensus 879 l~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 879 LTDSDADVRAYARRALAH 896 (897)
T ss_pred HhCCCHHHHHHHHHHHhh
Confidence 999999999999999874
No 24
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.83 E-value=1.4e-15 Score=141.69 Aligned_cols=501 Identities=13% Similarity=0.096 Sum_probs=325.2
Q ss_pred ccCCchHHHHHHHHHHhccccccCCcchHHhchHHHhhhhhchh-hHHHHHHHHHHHHHHhhcChhhHHhh----HHHHH
Q 007918 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEE-TCVRDKAVESLCRIGSQMRESDLVDW----YIPLV 130 (585)
Q Consensus 56 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~-~~vr~~a~~~l~~l~~~~~~~~~~~~----l~~~l 130 (585)
+....|..-..++..++.++.+.-....++.++..+.....++. ..++..+...++..|+...|+.+... +..+.
T Consensus 103 L~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv 182 (858)
T COG5215 103 LKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIV 182 (858)
T ss_pred hcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHH
Confidence 44555666566777777776543222334445555554455554 45677889999999999988665432 23333
Q ss_pred HH-hhcCcCccchhhHHhhhHhhc-----CCCChHHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhc---ccchHH
Q 007918 131 KR-LAAGEWFTARVSACGLFHIAY-----PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE---PAHLKT 201 (585)
Q Consensus 131 ~~-l~~~~~~~~r~~a~~~l~~~~-----~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~ 201 (585)
.. +.+.+...+|.++..++.... .+..+..+.-+++......+.++.++..++..++.+++.... +....+
T Consensus 183 ~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~ 262 (858)
T COG5215 183 MGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMEN 262 (858)
T ss_pred HhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 233446788999888776532 233456788888888899999999999999999999876532 122333
Q ss_pred HHHHHHHHhccC--hhHHHHHHHHHHHHhhccCc-------------------hhhhhhhHHHHHHhcc-------CCCh
Q 007918 202 DIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEP-------------------QDCVAHILPVIVNFSQ-------DKSW 253 (585)
Q Consensus 202 ~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~-------------------~~~~~~~~~~l~~~~~-------d~~~ 253 (585)
.+..+..+.+++ |+|...+++.+..+++.--+ ......++|.+.+++. +++|
T Consensus 263 aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdW 342 (858)
T COG5215 263 ALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDW 342 (858)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 344444455555 88999999999887763211 0113347777777653 4689
Q ss_pred HHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHH---HHHHhhHHHHHHhccCCc
Q 007918 254 RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSS 330 (585)
Q Consensus 254 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d~~ 330 (585)
.+-.++..||.-+++..|+....+ ++..+.+-+..++|.-|+++.-+++.+...-..+ .+.+..+|.+.....|+.
T Consensus 343 n~smaA~sCLqlfaq~~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~ 421 (858)
T COG5215 343 NPSMAASSCLQLFAQLKGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSC 421 (858)
T ss_pred chhhhHHHHHHHHHHHhhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccce
Confidence 999999999999999888766443 7777778888999999999999999988743322 345778888888889999
Q ss_pred HHHHHHHHHHHHhhchhhCHHH----HHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhH---------HhhhHH
Q 007918 331 QHVRSALASVIMGMAPLLGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL---------LSQSLL 397 (585)
Q Consensus 331 ~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---------~~~~ll 397 (585)
-.|+..++++++.++....... ...-.+.-....+.|. +.+-.++.+....++.++.+-. +...++
T Consensus 422 l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~-p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~ 500 (858)
T COG5215 422 LWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDC-PFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAIL 500 (858)
T ss_pred eehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhcc-chHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHH
Confidence 8999999999999987654211 1111112222234443 4555555555555554443211 111222
Q ss_pred HHHHHHh--cCCChHHHHHHHHHhHHHHHhh-------------------------------------------------
Q 007918 398 PAIVELA--EDRHWRVRLAIIEYIPLLASQL------------------------------------------------- 426 (585)
Q Consensus 398 ~~l~~~~--~~~~~~~r~~~~~~l~~l~~~~------------------------------------------------- 426 (585)
..+.... .+.+...|.++.++++.+....
T Consensus 501 ~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl 580 (858)
T COG5215 501 NALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVL 580 (858)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 2222111 1233345555555555543322
Q ss_pred -------Ch--hhHHHHHHHHHHHHccCC-chHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhcCcchHHHHHHH
Q 007918 427 -------GV--GFFDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTIL 494 (585)
Q Consensus 427 -------~~--~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~~~~~~~R~~a~ 494 (585)
+. +...+.++.++++.++.. ...+-.-...+++.+...++..+ +.+.++|.+...++..++.+-..++
T Consensus 581 ~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~av 660 (858)
T COG5215 581 EAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAV 660 (858)
T ss_pred HHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHH
Confidence 21 222334555555555544 22333344555666666555543 5688999999999888999999999
Q ss_pred HHHHHhhhhcChHH--HHhcHHHHHHhhcCCC--CchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHH
Q 007918 495 RAISLLAPVMGSEI--TCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVE 558 (585)
Q Consensus 495 ~~l~~l~~~~~~~~--~~~~i~~~l~~~l~d~--~~~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~ 558 (585)
..++.++..+|.++ +...++..|.++++++ ..+++-+.+..++.|+..++.. .+...++-.+.+
T Consensus 661 glvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qq 730 (858)
T COG5215 661 GLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQ 730 (858)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999888775 4678888999998876 6788999999999998887754 344445555554
No 25
>PRK09687 putative lyase; Provisional
Probab=99.83 E-value=2e-18 Score=156.96 Aligned_cols=257 Identities=15% Similarity=0.074 Sum_probs=204.8
Q ss_pred hhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHH
Q 007918 237 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQ 316 (585)
Q Consensus 237 ~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 316 (585)
...-.+.+...+.|++..||..++..|+.+. ....++.+..+++|+++.+|..++..|+.+...-.. ..
T Consensus 21 ~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~--------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~ 89 (280)
T PRK09687 21 KKLNDDELFRLLDDHNSLKRISSIRVLQLRG--------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QD 89 (280)
T ss_pred hhccHHHHHHHHhCCCHHHHHHHHHHHHhcC--------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hH
Confidence 3444566777889999999999999998764 356788888999999999999999999998542111 13
Q ss_pred hhHHHHHHh-ccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhh
Q 007918 317 HILPCVKEL-SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 395 (585)
Q Consensus 317 ~i~~~l~~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 395 (585)
..++.+..+ .+|+++.||..++.+++.++.... .....++..+...+.|+++.||..++.+|+.+.. +.
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--------~~ 159 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKKNP--LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--------EA 159 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc--ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--------HH
Confidence 456777766 789999999999999999853221 1123455667778899999999999999987653 45
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhH
Q 007918 396 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIT 475 (585)
Q Consensus 396 ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll 475 (585)
.++.|..+++|++|.+|..++..++.+. .+ .+...+.+...+.|+++.||..|+.+|+.+ +. +..+
T Consensus 160 ai~~L~~~L~d~~~~VR~~A~~aLg~~~--~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~----~~----~~av 225 (280)
T PRK09687 160 AIPLLINLLKDPNGDVRNWAAFALNSNK--YD----NPDIREAFVAMLQDKNEEIRIEAIIGLALR----KD----KRVL 225 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCC--CC----CHHHHHHHHHHhcCCChHHHHHHHHHHHcc----CC----hhHH
Confidence 7788999999999999999999998871 11 234678899999999999999999999886 22 3578
Q ss_pred HHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcC-CCCchHHHHHHHHHHH
Q 007918 476 PQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK-DRVPNIKFNVAKVLQS 538 (585)
Q Consensus 476 ~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~-d~~~~vR~~~~~~l~~ 538 (585)
|.+.+.+.+++ +|..++.+++.+.. +..+|.|..+++ ++++.|+..+.+++.+
T Consensus 226 ~~Li~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 226 SVLIKELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 99999998877 57788899988876 578899999996 8899999998888754
No 26
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=5.2e-17 Score=151.04 Aligned_cols=395 Identities=17% Similarity=0.200 Sum_probs=300.0
Q ss_pred HHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC------hhHHHHHHHHHHHHhhccCc--hhhhhh
Q 007918 168 YTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD------DSVRLLAVEGCAALGKLLEP--QDCVAH 239 (585)
Q Consensus 168 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d------~~vr~~a~~~l~~l~~~~~~--~~~~~~ 239 (585)
+...+.|+-.+-|++++.-+.++.+.+....-.+.+-.++..++.| .+.|+.++-.+.+.+-.++. ..+.+.
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 3455677888899999999999988765554445555555545444 34677777777777666665 347788
Q ss_pred hHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCccc--ccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCH----HH
Q 007918 240 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP----EL 313 (585)
Q Consensus 240 ~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~----~~ 313 (585)
++|-+..++.|.+.+||..+++.+..+++....+.. -+.++..+-++..|.+..||.++ +.+..+.+..-. ..
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~tF 163 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESASTF 163 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhcccccccc
Confidence 888888999999999999999999999998866543 24678888888999999998665 666666654422 23
Q ss_pred HHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHH--HHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchh-
Q 007918 314 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID- 390 (585)
Q Consensus 314 ~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~- 390 (585)
..+.++|.+...+.+.++.+|...+.++.-+-..-+-+. +.+.+++.+.+++.|++++||..+-.+++++...+..+
T Consensus 164 sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P 243 (675)
T KOG0212|consen 164 SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP 243 (675)
T ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc
Confidence 357889999999999999999999999988765544333 46789999999999999999999888888887665422
Q ss_pred -H-HhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhH--HHHHHHHHHHHccCCch-HHHHHHHHHHHHHHHHh
Q 007918 391 -L-LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVY-SIRDAAANNLKRLAEEF 465 (585)
Q Consensus 391 -~-~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~ 465 (585)
. -.+.+.+.+..-+.++++.++..++.++..+.+..|.+.. ...++..+..++.|.+. ..+..+...-+.+.+-.
T Consensus 244 ~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~ 323 (675)
T KOG0212|consen 244 SSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV 323 (675)
T ss_pred cccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH
Confidence 1 1245777888888889999999999999999998886643 34455666667776665 67777776666665544
Q ss_pred CHHH-----HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHH--HHhcHHHHHHhhcCCCCchHHHHHHHHHHH
Q 007918 466 GPEW-----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQS 538 (585)
Q Consensus 466 ~~~~-----~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~ 538 (585)
+.+. -...++..+...+++.....|.+++.++..+....+.+. +...+.+.+++-++|++..|-..++..+..
T Consensus 324 s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~ 403 (675)
T KOG0212|consen 324 SSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLAS 403 (675)
T ss_pred hhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHH
Confidence 4332 224788888899999999999999999999988877765 367889999999999999999999999999
Q ss_pred HHhhhchHHHHhhHHHHHHHhcCCC
Q 007918 539 LIPIVDQSMVEKTIRPCLVELTEDP 563 (585)
Q Consensus 539 l~~~~~~~~~~~~~~~~l~~l~~D~ 563 (585)
++.........+.+...|..+.+|+
T Consensus 404 i~~s~~~~~~~~fl~sLL~~f~e~~ 428 (675)
T KOG0212|consen 404 ICSSSNSPNLRKFLLSLLEMFKEDT 428 (675)
T ss_pred HhcCcccccHHHHHHHHHHHHhhhh
Confidence 9876555444455555555555554
No 27
>PTZ00429 beta-adaptin; Provisional
Probab=99.80 E-value=6.7e-15 Score=149.87 Aligned_cols=497 Identities=12% Similarity=0.076 Sum_probs=333.6
Q ss_pred cHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhccccccc-ccCCchHHHHHHHHHHhccccccCCcchHHhch
Q 007918 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (585)
Q Consensus 10 ~i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 88 (585)
.+.+|.+.|.+.+...|..|++.+-... ..|.+ ...+.+-+.. +..++.++|+.+--.+..+++ ..++..-..+
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~m-t~G~D--vS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~--~~pelalLaI 107 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANM-TMGRD--VSYLFVDVVKLAPSTDLELKKLVYLYVLSTAR--LQPEKALLAV 107 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHH-HCCCC--chHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc--cChHHHHHHH
Confidence 4788899999999999999987554332 34522 2234444444 556678888888777777655 2355555667
Q ss_pred HHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChH-HHHHHHHH
Q 007918 89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSI 167 (585)
Q Consensus 89 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-~~~~l~~~ 167 (585)
+.+++-+.|+++.+|-.|+++++.+ ....+.+++.+.+.+...|+++.||..|+.++..++...++. ....+.+.
T Consensus 108 Ntl~KDl~d~Np~IRaLALRtLs~I----r~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~ 183 (746)
T PTZ00429 108 NTFLQDTTNSSPVVRALAVRTMMCI----RVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKD 183 (746)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcC----CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHH
Confidence 8888888899999999999988775 345577788888999999999999999999999998766553 23456777
Q ss_pred HHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhcc---C--hhHHHHHHHHHHHHhhccCc-hhhhhhhH
Q 007918 168 YTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ---D--DSVRLLAVEGCAALGKLLEP-QDCVAHIL 241 (585)
Q Consensus 168 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~---d--~~vr~~a~~~l~~l~~~~~~-~~~~~~~~ 241 (585)
+..++.|.++.|...|..+|..+....+. ......+.+.+++. + +.-+...++.+.. ..+. +.....++
T Consensus 184 L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~--~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P~~~~e~~~il 258 (746)
T PTZ00429 184 LVELLNDNNPVVASNAAAIVCEVNDYGSE--KIESSNEWVNRLVYHLPECNEWGQLYILELLAA---QRPSDKESAETLL 258 (746)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHhCch--hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh---cCCCCcHHHHHHH
Confidence 88889999999999999999999765321 12233333333332 2 3344444444433 2222 22345677
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccc---cchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhh
Q 007918 242 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR---MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 318 (585)
Q Consensus 242 ~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i 318 (585)
..+...++..++.|...+++++..+......+... ..+.+.++.+. .+++++|..++..+..+.... +..+...
T Consensus 259 ~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~-P~lf~~~- 335 (746)
T PTZ00429 259 TRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLS-RRDAETQYIVCKNIHALLVIF-PNLLRTN- 335 (746)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHC-HHHHHHH-
Confidence 77777788889999999999888776433211111 12334455553 456899999999998887754 3333332
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHH
Q 007918 319 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 398 (585)
Q Consensus 319 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~ 398 (585)
+..+.-..+|+.. +|...++.+..++..- ..+.++.-+.....+.+.+++..++.+++.++..++. ..+.++.
T Consensus 336 ~~~Ff~~~~Dp~y-IK~~KLeIL~~Lane~----Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~--~a~~cV~ 408 (746)
T PTZ00429 336 LDSFYVRYSDPPF-VKLEKLRLLLKLVTPS----VAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS--VAPDCAN 408 (746)
T ss_pred HHhhhcccCCcHH-HHHHHHHHHHHHcCcc----cHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH--HHHHHHH
Confidence 3444444566664 8999999998887543 3455667777788888999999999999999876643 2356778
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHc---cCCchHHHHHHHHHHHHHHHHhCHHHHHhhhH
Q 007918 399 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL---QDKVYSIRDAAANNLKRLAEEFGPEWAMQHIT 475 (585)
Q Consensus 399 ~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l---~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll 475 (585)
.+.+++.+... +...++..+..+....+... +++.+...+ .=.+.+.|.+.++.+|.++..... ...++
T Consensus 409 ~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~~----il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~---a~~~L 480 (746)
T PTZ00429 409 LLLQIVDRRPE-LLPQVVTAAKDIVRKYPELL----MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN---GKDII 480 (746)
T ss_pred HHHHHhcCCch-hHHHHHHHHHHHHHHCccHH----HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh---HHHHH
Confidence 88887766433 33356677777766554432 334433322 124577888889999998876533 23455
Q ss_pred HHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcC-CCCchHHHHHHHHHHHH
Q 007918 476 PQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK-DRVPNIKFNVAKVLQSL 539 (585)
Q Consensus 476 ~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~-d~~~~vR~~~~~~l~~l 539 (585)
..+.+.+.+.+..+|...+.+...+.-..+.+ ....+...+..+.+ +.+++||..+.....-+
T Consensus 481 ~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~-~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLL 544 (746)
T PTZ00429 481 QRFIDTIMEHEQRVQLAILSAAVKMFLRDPQG-MEPQLNRVLETVTTHSDDPDVRDRAFAYWRLL 544 (746)
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHhcCcHH-HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 55556666677889999988888887655543 22333334434434 57889999988766544
No 28
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=6.6e-16 Score=159.24 Aligned_cols=449 Identities=16% Similarity=0.175 Sum_probs=315.1
Q ss_pred hhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCCh-----HHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccc
Q 007918 124 DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD-----ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH 198 (585)
Q Consensus 124 ~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~-----~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~ 198 (585)
..+...+..+..+++++.|++.|.++-.+..+++. ...+++..-+.+++.|++.-++..|++.++-+.+.- +..
T Consensus 817 ~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelg-d~~ 895 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELG-DSS 895 (1702)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecC-Cch
Confidence 34777778888999999999999999888877763 266888899999999999999999999999877643 333
Q ss_pred hHHHHHH-HHHHhccC---------h-hH-------------HHHHHHHHHHHhhccCchhhhhhhHHHHHHhcc-CCCh
Q 007918 199 LKTDIMS-IFEDLTQD---------D-SV-------------RLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ-DKSW 253 (585)
Q Consensus 199 ~~~~l~~-~l~~l~~d---------~-~v-------------r~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~-d~~~ 253 (585)
..+.+.. ++..++.. + ++ ....-+-+.+++..++ .+.++-.+.++.+ +..|
T Consensus 896 ~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~----qPdLVYKFM~LAnh~A~w 971 (1702)
T KOG0915|consen 896 LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG----QPDLVYKFMQLANHNATW 971 (1702)
T ss_pred hHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC----ChHHHHHHHHHhhhhchh
Confidence 3333333 33334332 0 01 1111122223333222 3445556666665 4689
Q ss_pred HHHHHHHHHHHHHHHHhCCcccc--cchHHHHHHhccCChHHHHHHHHHHHHHHHHhhC--HHHHHHhhHHHHHHhccCC
Q 007918 254 RVRYMVANQLYELCEAVGPEPTR--MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PELAIQHILPCVKELSSDS 329 (585)
Q Consensus 254 ~vR~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~i~~~l~~~~~d~ 329 (585)
.-|..++-.|+.++...+.+..+ .+++|-+.+.--|++..|+.+....|..+...-. -+.+..+|+.-+...+.++
T Consensus 972 nSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~k 1051 (1702)
T KOG0915|consen 972 NSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSK 1051 (1702)
T ss_pred hcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccch
Confidence 99999999999999888765433 4789999999999999999999999998875311 2244567777777778899
Q ss_pred cHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHh---hcCCChHHHHHHHHHhHHhhh---hhc-------hhHHhhhH
Q 007918 330 SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL---LKDEFPDVRLNIISKLDQVNQ---VIG-------IDLLSQSL 396 (585)
Q Consensus 330 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~---l~d~~~~vr~~a~~~l~~l~~---~~~-------~~~~~~~l 396 (585)
.|+||+++|.++..+....+.+.+.+.+..++... ..|-.+.||.+|-.+...+.+ ..+ .......+
T Consensus 1052 ewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~i 1131 (1702)
T KOG0915|consen 1052 EWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDII 1131 (1702)
T ss_pred hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHH
Confidence 99999999999999988877777666655554444 446667899887555444433 221 12334667
Q ss_pred HHHHHH-HhcCCChHHHHHHHHHhHHHHHhhChh--hHHHHHHHHHHHHccCCchHH-------------------HHHH
Q 007918 397 LPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSI-------------------RDAA 454 (585)
Q Consensus 397 l~~l~~-~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~v-------------------r~~a 454 (585)
+|.+.. -+.++-..+|..++..+..++++.|.. .+.+.++|.+.+..+.-++.| |..+
T Consensus 1132 LPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~ 1211 (1702)
T KOG0915|consen 1132 LPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASA 1211 (1702)
T ss_pred HHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhh
Confidence 787765 233667889999999999999998853 344678888887765544333 2222
Q ss_pred H------HHHHHHHHHhCHHHHHhhhHHHHHhhhcCc-chHHHHHHHHHHHHhhhhcChHH--HHhcHHHHHHhhcCCCC
Q 007918 455 A------NNLKRLAEEFGPEWAMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRV 525 (585)
Q Consensus 455 ~------~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~-~~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~l~d~~ 525 (585)
. .++..+..+... ...++++|.+.+++..+ ....|.++..++..+...+|.+. +..+++..++.+++|.+
T Consensus 1212 aksspmmeTi~~ci~~iD~-~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRN 1290 (1702)
T KOG0915|consen 1212 AKSSPMMETINKCINYIDI-SVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRN 1290 (1702)
T ss_pred hcCCcHHHHHHHHHHhhhH-HHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhcccccc
Confidence 2 233333333222 24678899999988766 57889999999999998888764 67889999999999999
Q ss_pred chHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007918 526 PNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 579 (585)
Q Consensus 526 ~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~ 579 (585)
+.+|...+.+.|.++....++...+.+...+..++.+.++.- ..++..+..|+
T Consensus 1291 esv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~-siscatis~Ia 1343 (1702)
T KOG0915|consen 1291 ESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLK-SISCATISNIA 1343 (1702)
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCcc-chhHHHHHHHH
Confidence 999999999999999887776666666666666665554432 33443333343
No 29
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.79 E-value=4.2e-17 Score=174.16 Aligned_cols=270 Identities=20% Similarity=0.188 Sum_probs=204.1
Q ss_pred HHHHhccC--hhHHHHHHHHHHHHhhccCchhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHH
Q 007918 206 IFEDLTQD--DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAY 283 (585)
Q Consensus 206 ~l~~l~~d--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l 283 (585)
.+...++| +.||..|+..|+.+.. +..++.|...+.|+++.||..++..|+.+....+ -.+.+
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-------~~~~L 689 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-------PAPAL 689 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-------chHHH
Confidence 33444455 6699999999888642 3467778888899999999999999988754322 13456
Q ss_pred HHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHH
Q 007918 284 VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLS 363 (585)
Q Consensus 284 ~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~ 363 (585)
...++++++.||..++..|+.+.. +. ...+...+.|+++.||..++.+|+.+.. .+.+..
T Consensus 690 ~~~L~~~d~~VR~~A~~aL~~~~~--~~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~l~~ 749 (897)
T PRK13800 690 RDHLGSPDPVVRAAALDVLRALRA--GD-------AALFAAALGDPDHRVRIEAVRALVSVDD-----------VESVAG 749 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHHhhcc--CC-------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHHHHH
Confidence 677788889999999998888642 11 1244567889999999999999987632 133567
Q ss_pred hhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHc
Q 007918 364 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 443 (585)
Q Consensus 364 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l 443 (585)
.+.|+++.||..++.+|+.+...- ....+.+..+++|+++.+|..++..|+.+.. . ..+.+.+...+
T Consensus 750 ~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~----~---~~~~~~l~~aL 816 (897)
T PRK13800 750 AATDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGC----P---PDDVAAATAAL 816 (897)
T ss_pred HhcCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC----c---chhHHHHHHHh
Confidence 789999999999999999876421 1235777888899999999999999876622 1 12335577788
Q ss_pred cCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCC
Q 007918 444 QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD 523 (585)
Q Consensus 444 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d 523 (585)
.|++|.||..|+.+|+.+. . +..++.+..++.|+++.||..++.+|+.+. +. +...+.|...++|
T Consensus 817 ~d~d~~VR~~Aa~aL~~l~----~----~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~~----~~a~~~L~~al~D 881 (897)
T PRK13800 817 RASAWQVRQGAARALAGAA----A----DVAVPALVEALTDPHLDVRKAAVLALTRWP---GD----PAARDALTTALTD 881 (897)
T ss_pred cCCChHHHHHHHHHHHhcc----c----cchHHHHHHHhcCCCHHHHHHHHHHHhccC---CC----HHHHHHHHHHHhC
Confidence 9999999999999998763 1 245688888999999999999999999982 11 3456778889999
Q ss_pred CCchHHHHHHHHHHH
Q 007918 524 RVPNIKFNVAKVLQS 538 (585)
Q Consensus 524 ~~~~vR~~~~~~l~~ 538 (585)
+++.||..+.++|..
T Consensus 882 ~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 882 SDADVRAYARRALAH 896 (897)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999998864
No 30
>PTZ00429 beta-adaptin; Provisional
Probab=99.76 E-value=1.4e-13 Score=140.37 Aligned_cols=471 Identities=10% Similarity=0.036 Sum_probs=315.0
Q ss_pred CCCCCcccHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhccccccc-ccCCchHHHHHHHHHHhccccccCCc
Q 007918 3 MVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGV 81 (585)
Q Consensus 3 ~~~~~~~~i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~ 81 (585)
+|.+--.-....++.+.++|...|+...-.+...++.- ++... -.+..+.. +.|.+|.+|..+.+.++++ +.+
T Consensus 62 ~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~-pelal-LaINtl~KDl~d~Np~IRaLALRtLs~I----r~~ 135 (746)
T PTZ00429 62 MGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQ-PEKAL-LAVNTFLQDTTNSSPVVRALAVRTMMCI----RVS 135 (746)
T ss_pred CCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-hHHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHcC----CcH
Confidence 44333334666777899999999999887777665422 22221 23444444 8999999999999999987 346
Q ss_pred chHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChH--
Q 007918 82 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-- 159 (585)
Q Consensus 82 ~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-- 159 (585)
+....+.+.+.+.+.|+++.||++|+-++..+....+.-.....+.+.+.++..|.++.|...|..++..+.+..+..
T Consensus 136 ~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~ 215 (746)
T PTZ00429 136 SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE 215 (746)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH
Confidence 788888999999999999999999999999998765532223346777888888999999999999888887654431
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC--hhHHHHHHHHHHHHhhccCchhhh
Q 007918 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEPQDCV 237 (585)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~~~~~ 237 (585)
.....+..+...+.+-+++-+..+...|...... .+.....++..+...++. +.|...++.++-.+.....++ ..
T Consensus 216 l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~--~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~-~~ 292 (746)
T PTZ00429 216 SSNEWVNRLVYHLPECNEWGQLYILELLAAQRPS--DKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE-LI 292 (746)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH-HH
Confidence 1222333344444556677777777777442111 111223444444444444 668888888888877654322 22
Q ss_pred hh----hHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHH
Q 007918 238 AH----ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL 313 (585)
Q Consensus 238 ~~----~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~ 313 (585)
+. +.+.+..+ ..+++++|..+++.+..+....+.-. .. -+..|+-..+|+. .||...++.|..++..-+-
T Consensus 293 ~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~lf-~~-~~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane~Nv-- 366 (746)
T PTZ00429 293 ERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFPNLL-RT-NLDSFYVRYSDPP-FVKLEKLRLLLKLVTPSVA-- 366 (746)
T ss_pred HHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCHHHH-HH-HHHhhhcccCCcH-HHHHHHHHHHHHHcCcccH--
Confidence 22 22334444 45678899999999988877543211 11 2445555667765 5899999999888764333
Q ss_pred HHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHh
Q 007918 314 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS 393 (585)
Q Consensus 314 ~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 393 (585)
..++.-+.....+.+...+..++.+++.++..++ ...+.++..+..++.+... +...++..+..+....+..
T Consensus 367 --~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~--~~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~--- 438 (746)
T PTZ00429 367 --PEILKELAEYASGVDMVFVVEVVRAIASLAIKVD--SVAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPEL--- 438 (746)
T ss_pred --HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccH---
Confidence 4455556666778899999999999999987664 3456777888888876544 3345677777776655442
Q ss_pred hhHHHHHHHHh---cCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHH
Q 007918 394 QSLLPAIVELA---EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA 470 (585)
Q Consensus 394 ~~ll~~l~~~~---~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 470 (585)
.+++.+.... .-.++..|.+.++.++.++..+.. ...++..+.+-+.+.+.+||.+.+.+..++.-....+
T Consensus 439 -~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~---a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~-- 512 (746)
T PTZ00429 439 -LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN---GKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQG-- 512 (746)
T ss_pred -HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh---HHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHH--
Confidence 2344444322 225678999999999998876643 2345544555556778899999999988887665543
Q ss_pred HhhhHHHHHhhh-c-CcchHHHHHHHHHHHHhhh
Q 007918 471 MQHITPQVLEMI-N-NPHYLYRMTILRAISLLAP 502 (585)
Q Consensus 471 ~~~ll~~l~~~l-~-~~~~~~R~~a~~~l~~l~~ 502 (585)
.+..+..++..+ + +.++.+|..|.....-+..
T Consensus 513 ~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs~ 546 (746)
T PTZ00429 513 MEPQLNRVLETVTTHSDDPDVRDRAFAYWRLLSK 546 (746)
T ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHcC
Confidence 233455555443 4 4678999999887766543
No 31
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=1.9e-14 Score=148.75 Aligned_cols=302 Identities=15% Similarity=0.149 Sum_probs=213.4
Q ss_pred HHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhh----HHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChH
Q 007918 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD----LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI 159 (585)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~ 159 (585)
...+...+..++.+++|..|++++-=|-.+.++++... ..+.+...+..+..|+++-++-.|+.-++-+++--+..
T Consensus 816 ~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~ 895 (1702)
T KOG0915|consen 816 ETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS 895 (1702)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch
Confidence 34577788889999999999998888888888777421 13446666777788888778888888888888877776
Q ss_pred HHHHHHHHHHhhcCCCc---------hHH-------------HHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC---h
Q 007918 160 LKTELRSIYTQLCQDDM---------PMV-------------RRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD---D 214 (585)
Q Consensus 160 ~~~~l~~~l~~l~~d~~---------~~v-------------r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d---~ 214 (585)
.++.+.+-+...+.... .++ +....+-|.++++.++. +.++=-+++++++ |
T Consensus 896 ~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~q----PdLVYKFM~LAnh~A~w 971 (1702)
T KOG0915|consen 896 LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQ----PDLVYKFMQLANHNATW 971 (1702)
T ss_pred hHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCC----hHHHHHHHHHhhhhchh
Confidence 66666666554442211 000 12233444445554443 4455556667766 7
Q ss_pred hHHHHHHHHHHHHhhccCc--hhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhccCC
Q 007918 215 SVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDN 290 (585)
Q Consensus 215 ~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ll~d~ 290 (585)
+-|..|+..++.+++..+. +.+...++|.+.++--|++..|+.+....++.+..--.. +.+.++++.-+...+.+.
T Consensus 972 nSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~k 1051 (1702)
T KOG0915|consen 972 NSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSK 1051 (1702)
T ss_pred hcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccch
Confidence 8999999999999987765 567788889999999999999999888888776542111 222345677777778899
Q ss_pred hHHHHHHHHHHHHHHHHhhCHHHH---HHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhh----------CHHHHHHhH
Q 007918 291 EAEVRIAAAGKVTKFCRILNPELA---IQHILPCVKELSSDSSQHVRSALASVIMGMAPLL----------GKDATIEQL 357 (585)
Q Consensus 291 ~~~vr~~a~~~l~~l~~~~~~~~~---~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~----------~~~~~~~~l 357 (585)
.|.||+++|-++..+.+.-+.+.+ .++++..+.+..+|-.+.||.++-.+...+++.+ ....+.+.+
T Consensus 1052 ewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~i 1131 (1702)
T KOG0915|consen 1052 EWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDII 1131 (1702)
T ss_pred hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHH
Confidence 999999999999999887655543 3456666777778888899988766555544332 124467788
Q ss_pred HHHHH-HhhcCCChHHHHHHHHHhHHhhhhhch
Q 007918 358 LPIFL-SLLKDEFPDVRLNIISKLDQVNQVIGI 389 (585)
Q Consensus 358 ~~~l~-~~l~d~~~~vr~~a~~~l~~l~~~~~~ 389 (585)
+|.+. +...+.-++||..++..+..+.+..|.
T Consensus 1132 LPfLl~~gims~v~evr~~si~tl~dl~Kssg~ 1164 (1702)
T KOG0915|consen 1132 LPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGK 1164 (1702)
T ss_pred HHHHhccCcccchHHHHHHHHHHHHHHHHhchh
Confidence 88876 345577789999999999998887764
No 32
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.74 E-value=3.1e-16 Score=158.08 Aligned_cols=306 Identities=20% Similarity=0.230 Sum_probs=233.8
Q ss_pred HHHHHHhccC---hhHHHHHHHHHHHHhhccCchhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCC------cc
Q 007918 204 MSIFEDLTQD---DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP------EP 274 (585)
Q Consensus 204 ~~~l~~l~~d---~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~------~~ 274 (585)
++++...+.. .+.+..|++.+..++.....+...+.++|++..+..|+...||..|+..+..+...+.+ ..
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dani 503 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANI 503 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchh
Confidence 4444444444 45788899999999999888888999999999999999999999999999888776543 34
Q ss_pred cccchHHHHHHhccC-ChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHH--HhccCCcHHHHHHHHHHHHhhchhh---
Q 007918 275 TRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVK--ELSSDSSQHVRSALASVIMGMAPLL--- 348 (585)
Q Consensus 275 ~~~~l~~~l~~ll~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~--~~~~d~~~~vr~~a~~~l~~l~~~~--- 348 (585)
+++.++|.+..++.| ....||.+.+.+|+.+++..-. +.+.. ..+. ...++++.+ ...+..
T Consensus 504 F~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r--Fle~~-q~~~~~g~~n~~nse----------t~~~~~~~~ 570 (1431)
T KOG1240|consen 504 FPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR--FLELT-QELRQAGMLNDPNSE----------TAPEQNYNT 570 (1431)
T ss_pred hHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH--HHHHH-HHHHhcccccCcccc----------cccccccch
Confidence 567889999999999 5577999999999998874221 10100 0000 113344332 000000
Q ss_pred CHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhCh
Q 007918 349 GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 428 (585)
Q Consensus 349 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~ 428 (585)
+.......+-..+..++.|+.+.||.+.++++..++..+|.++-.+.+++.+..+++|++|+.|.+..+.|..++-.+|.
T Consensus 571 ~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~ 650 (1431)
T KOG1240|consen 571 ELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW 650 (1431)
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee
Confidence 01112334455677889999999999999999999999999887789999999999999999999999999999888898
Q ss_pred hhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCH-HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChH
Q 007918 429 GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 507 (585)
Q Consensus 429 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~ 507 (585)
....+.++|++.+.+.|++..|-..|+.++..+++.--- ......++..+..++.+||..+|.+++..+..+...++..
T Consensus 651 rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~a 730 (1431)
T KOG1240|consen 651 RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAA 730 (1431)
T ss_pred eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhh
Confidence 888899999999999999999999999999999884211 1133456777777899999999999999999999988876
Q ss_pred HHHhcHHHHHHhhcC
Q 007918 508 ITCSRLLPVVINASK 522 (585)
Q Consensus 508 ~~~~~i~~~l~~~l~ 522 (585)
...-.++|.+-.++.
T Consensus 731 dvyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 731 DVYCKLMPLIRPFLE 745 (1431)
T ss_pred hheEEeehhhHHhhh
Confidence 555555555555444
No 33
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.73 E-value=1.4e-15 Score=153.54 Aligned_cols=267 Identities=20% Similarity=0.232 Sum_probs=182.4
Q ss_pred HHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC--hhHHHHHHHHHHHHhhccCc------hhhhhhhHHHHHHhcc
Q 007918 178 MVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEP------QDCVAHILPVIVNFSQ 249 (585)
Q Consensus 178 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~------~~~~~~~~~~l~~~~~ 249 (585)
..|..|...|..+......+...+.++|.+.++..| ..||..|+.++..+.....+ ..+.++++|.+..+..
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~ 517 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLN 517 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhc
Confidence 344444444444444444444445555555555444 23555555544444433221 2334445555555555
Q ss_pred C-CChHHHHHHHHHHHHHHHHhC------------------Cc------c---c----ccchHHHHHHhccCChHHHHHH
Q 007918 250 D-KSWRVRYMVANQLYELCEAVG------------------PE------P---T----RMDLVPAYVRLLRDNEAEVRIA 297 (585)
Q Consensus 250 d-~~~~vR~~~~~~l~~l~~~~~------------------~~------~---~----~~~l~~~l~~ll~d~~~~vr~~ 297 (585)
| ....||.+.+.+|+.++...- .. . . ...+-.....++.|+++.||++
T Consensus 518 d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~ 597 (1431)
T KOG1240|consen 518 DSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRA 597 (1431)
T ss_pred cCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 4 333445555555554443310 00 0 0 0113344567889999999999
Q ss_pred HHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHH
Q 007918 298 AAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNII 377 (585)
Q Consensus 298 a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~ 377 (585)
-++.+..+|..+|.+.-.+.+++.+..+++|++|..|.++.+.|..++-.+|.....+.++|++.+.+.|.++.|-..|+
T Consensus 598 Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL 677 (1431)
T KOG1240|consen 598 LLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSAL 677 (1431)
T ss_pred HHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHH
Confidence 99999999999999876678899999999999999999999999999999998778899999999999999999999999
Q ss_pred HHhHHhhhhh--chhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccC
Q 007918 378 SKLDQVNQVI--GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD 445 (585)
Q Consensus 378 ~~l~~l~~~~--~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 445 (585)
.++..+++.- .+..+ -.++.....++-++|-.+|..++..|..+...++.......+.|++-..+..
T Consensus 678 ~~ls~Lik~~ll~K~~v-~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~~ 746 (1431)
T KOG1240|consen 678 GSLSILIKLGLLRKPAV-KDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLER 746 (1431)
T ss_pred HHHHHHHHhcccchHHH-HHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhhc
Confidence 9999998642 22222 3455555567889999999999999999999888777666677776666553
No 34
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=1.1e-13 Score=129.12 Aligned_cols=413 Identities=15% Similarity=0.106 Sum_probs=287.4
Q ss_pred hhhchhhHHHHHHHHHHHHHHhhcCh----hhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCCh---HHHHHHHH
Q 007918 94 LCTVEETCVRDKAVESLCRIGSQMRE----SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD---ILKTELRS 166 (585)
Q Consensus 94 l~~~~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~---~~~~~l~~ 166 (585)
.++|+-.+-|++|+.-+..+.+.+-. +++.+.+-.+...+..+.+...|..+...+...+-.++. .+.+.+++
T Consensus 8 ~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~ 87 (675)
T KOG0212|consen 8 GLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVP 87 (675)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhH
Confidence 44567777777777777777665433 233333333445555555444455444433333222322 37888899
Q ss_pred HHHhhcCCCchHHHHHHHHhHHHHHhhhccc--chHHHHHHHHHHhccC-hhHHHHHHHHHHHHhhccCc----hhhhhh
Q 007918 167 IYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQD-DSVRLLAVEGCAALGKLLEP----QDCVAH 239 (585)
Q Consensus 167 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d-~~vr~~a~~~l~~l~~~~~~----~~~~~~ 239 (585)
.....++|++..||--|++.+.++++....+ .+.+.+...+.++..| |..-+.+.+.+..+.+.... ....+.
T Consensus 88 Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~ 167 (675)
T KOG0212|consen 88 PVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPE 167 (675)
T ss_pred HHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHH
Confidence 9999999999999999999999999877554 3467778888888888 54333466677766654432 223567
Q ss_pred hHHHHHHhccCCChHHHHHHHHHHHHHHHHhCC-cc--cccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHH---
Q 007918 240 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-EP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL--- 313 (585)
Q Consensus 240 ~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~-~~--~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~--- 313 (585)
++|.+..-+.+.++.+|...+.-+..+- ..++ +. ..+.+++.+++.++|+..+||..+-..++.+...+..+.
T Consensus 168 ~ipLL~eriy~~n~~tR~flv~Wl~~Ld-s~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~ 246 (675)
T KOG0212|consen 168 FIPLLRERIYVINPMTRQFLVSWLYVLD-SVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM 246 (675)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHh-cCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 8888888888889999988887766543 2222 11 124689999999999999999888888887766543321
Q ss_pred HHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHH--HHHhHHHHHHHhhcCCCh-HHHHHHHHHhHHhhhhhchh
Q 007918 314 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIGID 390 (585)
Q Consensus 314 ~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~ 390 (585)
-...+++.+..-+..+++.++..|+.++..+.+..|++. +...++..+..++.|..+ ..+..+...-+.+....+.+
T Consensus 247 d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~ 326 (675)
T KOG0212|consen 247 DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSE 326 (675)
T ss_pred CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhh
Confidence 125677888888889999999999999999999888654 345566666677777665 45555554443444433332
Q ss_pred HH-----hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhH--HHHHHHHHHHHccCCchHHHHHHHHHHHHHHH
Q 007918 391 LL-----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 463 (585)
Q Consensus 391 ~~-----~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 463 (585)
.. ...++..+...+.+.....|.++++++..+-...+.+.+ .+.+.+.+.+.+.|++.+|-..++..++.++.
T Consensus 327 ~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~ 406 (675)
T KOG0212|consen 327 RLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICS 406 (675)
T ss_pred hhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhc
Confidence 21 136778888889999999999999999999888876654 35688889999999999999999999999987
Q ss_pred HhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHH
Q 007918 464 EFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI 508 (585)
Q Consensus 464 ~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~ 508 (585)
.-... ...+++..+++++.....-.+..+...+.+++-.+.++.
T Consensus 407 s~~~~-~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~ 450 (675)
T KOG0212|consen 407 SSNSP-NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAER 450 (675)
T ss_pred Ccccc-cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHH
Confidence 43221 224566667777766665566666666666666666543
No 35
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.2e-12 Score=127.09 Aligned_cols=512 Identities=17% Similarity=0.151 Sum_probs=330.3
Q ss_pred HHHHHHhcChhHHHHHHHhh-hHHHHHHhhChhhhhhhccccccc-ccCCchHHHHHHHHHHhccccccCCcchHHhchH
Q 007918 12 AVLIDELKNDDIQLRLNSIR-RLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP 89 (585)
Q Consensus 12 ~~l~~~l~~~~~~~R~~a~~-~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 89 (585)
..|..-|.|........|++ .++.+|++.+ ...+.|-+.. ....+.+|++.+=-.|-..++. +++.+-.=+.
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d----vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEe--qpdLALLSIn 111 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD----VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEE--QPDLALLSIN 111 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCc----HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhc--CCCceeeeHH
Confidence 34556667665556666665 5566665443 3456666654 7778899999887777777662 3454444566
Q ss_pred HHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChHHHHHHHHHHH
Q 007918 90 PLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYT 169 (585)
Q Consensus 90 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~ 169 (585)
.+++-+.|+|+.+|-.|++++..+ .-..+.+.++-.+.+...|.++.||..|+.++..++.- ++++..++.+.+.
T Consensus 112 tfQk~L~DpN~LiRasALRvlSsI----Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL-d~e~k~qL~e~I~ 186 (968)
T KOG1060|consen 112 TFQKALKDPNQLIRASALRVLSSI----RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL-DPEQKDQLEEVIK 186 (968)
T ss_pred HHHhhhcCCcHHHHHHHHHHHHhc----chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC-ChhhHHHHHHHHH
Confidence 799999999999999999998775 23345667777888899999999999999999999864 4555569999999
Q ss_pred hhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhc---cC-hh-HHHHHHHHHHHHhhccCchhhhhhhHHHH
Q 007918 170 QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT---QD-DS-VRLLAVEGCAALGKLLEPQDCVAHILPVI 244 (585)
Q Consensus 170 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~---~d-~~-vr~~a~~~l~~l~~~~~~~~~~~~~~~~l 244 (585)
.++.|.++.|--+|..++..++.. ..+-+.+-+.++| .| ++ =+...+..|...+...-.+... .
T Consensus 187 ~LLaD~splVvgsAv~AF~evCPe-----rldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~------~ 255 (968)
T KOG1060|consen 187 KLLADRSPLVVGSAVMAFEEVCPE-----RLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTV------V 255 (968)
T ss_pred HHhcCCCCcchhHHHHHHHHhchh-----HHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccc------c
Confidence 999999999999998888877642 2233444444433 34 22 3334444444444321111000 0
Q ss_pred HHhccCCChHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHH
Q 007918 245 VNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC 321 (585)
Q Consensus 245 ~~~~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~ 321 (585)
.+...+.. |..-..... ...-++ +....-++.....++...++.|-.++++.+..++... . ...+...
T Consensus 256 ~~~~e~n~---~~~~~~~~~--~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~---~-~~~i~ka 326 (968)
T KOG1060|consen 256 DSSLEDNG---RSCNLKDKY--NEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN---Q-VTKIAKA 326 (968)
T ss_pred ccccccCc---ccccccccc--cccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH---H-HHHHHHH
Confidence 00111111 000000000 000001 1111235555566777888999999988888876542 2 2445566
Q ss_pred HHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhh-cCCCh-HHHHHHHHHhHHhhhhhchhHHhhhHHHH
Q 007918 322 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL-KDEFP-DVRLNIISKLDQVNQVIGIDLLSQSLLPA 399 (585)
Q Consensus 322 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~ll~~ 399 (585)
+.+++. .+..+|......+..++...+ ..+.|++.++. ...++ .++.-=++.|..++..- -...+++.
T Consensus 327 LvrLLr-s~~~vqyvvL~nIa~~s~~~~-----~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~es----ni~~ILrE 396 (968)
T KOG1060|consen 327 LVRLLR-SNREVQYVVLQNIATISIKRP-----TLFEPHLKSFFVRSSDPTQVKILKLEILSNLANES----NISEILRE 396 (968)
T ss_pred HHHHHh-cCCcchhhhHHHHHHHHhcch-----hhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhc----cHHHHHHH
Confidence 666665 455688888888888764332 34556666553 23333 33433344555544322 12568888
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHH
Q 007918 400 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL 479 (585)
Q Consensus 400 l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~ 479 (585)
+....++.+.++-..++.+++..+...+. +.+..+.-++.++...+.-|-..++..+..+.+.-..+ ..+++.++.
T Consensus 397 ~q~YI~s~d~~faa~aV~AiGrCA~~~~s--v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~--h~~ii~~La 472 (968)
T KOG1060|consen 397 LQTYIKSSDRSFAAAAVKAIGRCASRIGS--VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAE--HLEILFQLA 472 (968)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHhhCc--hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHH--HHHHHHHHH
Confidence 88899988888999999999999887764 34556777788888889999999999999998864443 345777777
Q ss_pred hhhcCc-chHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHH
Q 007918 480 EMINNP-HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVE 558 (585)
Q Consensus 480 ~~l~~~-~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~ 558 (585)
.++... ...-|.+.++.++..+..... +.+.++..+.+-+.|+.+.||..++..-..+...-..+ .+.+...+..
T Consensus 473 ~lldti~vp~ARA~IiWLige~~e~vpr--i~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~~--~kll~~Yv~~ 548 (968)
T KOG1060|consen 473 RLLDTILVPAARAGIIWLIGEYCEIVPR--IAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNIDQ--TKLLVQYVFE 548 (968)
T ss_pred HHhhhhhhhhhhceeeeeehhhhhhcch--hchHHHHHHHHhhccccchhhHHHHHhhhhheEechhh--HHHHHHHHHH
Confidence 776433 356677778887777664332 45667777778889999999999999888886553332 2333333333
Q ss_pred h-cCCCCccHHHHHH
Q 007918 559 L-TEDPDVDVRFFAT 572 (585)
Q Consensus 559 l-~~D~~~~Vr~~a~ 572 (585)
+ --|+.-++|..+.
T Consensus 549 L~~yD~sYDiRDRaR 563 (968)
T KOG1060|consen 549 LARYDLSYDIRDRAR 563 (968)
T ss_pred HhccCCCcchhHHHH
Confidence 3 3478888887764
No 36
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.1e-12 Score=124.67 Aligned_cols=338 Identities=14% Similarity=0.133 Sum_probs=244.8
Q ss_pred hhhhHHHHHHhcc-CCChHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCH-
Q 007918 237 VAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP- 311 (585)
Q Consensus 237 ~~~~~~~l~~~~~-d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~- 311 (585)
..-++|.+.+++. +.++.++..++.+|..++..... -......+|.|+.++.+++..|++.|+++|+.++..-..
T Consensus 107 ~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 107 QSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred HcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHH
Confidence 3457777777664 77899999999999999875432 223446899999999999999999999999998764221
Q ss_pred --HHHHHhhHHHHHHhccCCcH-HHHHHHHHHHHhhchhhCH---HHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhh
Q 007918 312 --ELAIQHILPCVKELSSDSSQ-HVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 385 (585)
Q Consensus 312 --~~~~~~i~~~l~~~~~d~~~-~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 385 (585)
......+++.+..++..++. ...+.+..++.+++..-.+ -.....++|.+..++.+.+++|...|++++..+..
T Consensus 187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsd 266 (514)
T KOG0166|consen 187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTD 266 (514)
T ss_pred HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 12233456666666665554 6778889999999876522 23467889999999999999999999999999886
Q ss_pred hhchh---HHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhh-----HHHHHHHHHHHHcc-CCchHHHHHHHH
Q 007918 386 VIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF-----FDDKLGALCMQWLQ-DKVYSIRDAAAN 456 (585)
Q Consensus 386 ~~~~~---~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~-----~~~~l~~~l~~~l~-d~~~~vr~~a~~ 456 (585)
...+. .+.-.++|.+..++.+.+..++.-++.+++.++. |.+. .....+|.+..++. .+...+|+.|+.
T Consensus 267 g~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt--G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW 344 (514)
T KOG0166|consen 267 GSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT--GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACW 344 (514)
T ss_pred CChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee--ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHH
Confidence 43322 1223678999999999999999999999988654 3332 23346788888888 666779999999
Q ss_pred HHHHHHHHhCHH---HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHH----HHhcHHHHHHhhcCCCCchHH
Q 007918 457 NLKRLAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIK 529 (585)
Q Consensus 457 ~l~~l~~~~~~~---~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~l~d~~~~vR 529 (585)
+++++....... .+...++|.++..+...++.+|..|+++++++.....++. +...+++.+..++.-++..+-
T Consensus 345 ~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii 424 (514)
T KOG0166|consen 345 TISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKII 424 (514)
T ss_pred HHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHH
Confidence 999998732211 2346799999999999999999999999999987655543 234578888888877777777
Q ss_pred HHHHHHHHHHHhhhch------HHHH-----hhHHHHHHHhcCCCCccHHHHHHHHHH
Q 007918 530 FNVAKVLQSLIPIVDQ------SMVE-----KTIRPCLVELTEDPDVDVRFFATQAIQ 576 (585)
Q Consensus 530 ~~~~~~l~~l~~~~~~------~~~~-----~~~~~~l~~l~~D~~~~Vr~~a~~al~ 576 (585)
..++.++..+...... ..+. ..-++.+..|....+.+|...|.+.++
T Consensus 425 ~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~ 482 (514)
T KOG0166|consen 425 LVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIID 482 (514)
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHH
Confidence 7888888887654321 1111 123455555665555565555444443
No 37
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=4.4e-13 Score=127.32 Aligned_cols=340 Identities=16% Similarity=0.135 Sum_probs=241.8
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHHHHhCCc----ccccchHHHHHHhcc-CChHHHHHHHHHHHHHHHHhhCHH---H
Q 007918 242 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPE---L 313 (585)
Q Consensus 242 ~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~ll~-d~~~~vr~~a~~~l~~l~~~~~~~---~ 313 (585)
+.+.....+++...+..+...+..+...-... .....++|.+++.++ +.++.++..|+++|..++...... .
T Consensus 69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 69 ELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV 148 (514)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence 33334444444444555555555544332211 112368899999886 666999999999999998753322 2
Q ss_pred HHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCH--HHH-HHhHHHHHHHhhcCCCh-HHHHHHHHHhHHhhhhhc-
Q 007918 314 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DAT-IEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIG- 388 (585)
Q Consensus 314 ~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~-~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~- 388 (585)
.....+|.+..++.+++..|++.++.++++++...+. +.. ...+++.+..++....+ ....++.++|..++..-.
T Consensus 149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P 228 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP 228 (514)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCC
Confidence 2345789999999999999999999999999865431 111 22345555666665544 677789999999997652
Q ss_pred --hhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChh---hHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHH
Q 007918 389 --IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 463 (585)
Q Consensus 389 --~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 463 (585)
+-.....++|.+..++.+.+..+...++++++.+...-... .+...+.|.+..++..+...|+..|+.++|.++.
T Consensus 229 ~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt 308 (514)
T KOG0166|consen 229 SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT 308 (514)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee
Confidence 11233678999999999999999999999999998654321 2334578899999999999999999999999765
Q ss_pred HhCHH---HHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhhhhcCh---HHHHhcHHHHHHhhcCCCCchHHHHHHHHH
Q 007918 464 EFGPE---WAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVL 536 (585)
Q Consensus 464 ~~~~~---~~~~~ll~~l~~~l~-~~~~~~R~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l 536 (585)
..+.. ......+|.+..+++ ++...+|..|++++++|..+-.. ..+-..++|.|+.+++..+..+|..|++++
T Consensus 309 G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaI 388 (514)
T KOG0166|consen 309 GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAI 388 (514)
T ss_pred ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHH
Confidence 32221 134678899999887 66777999999999999873221 124568899999999999999999999999
Q ss_pred HHHHhhhchHH----HHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 007918 537 QSLIPIVDQSM----VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 581 (585)
Q Consensus 537 ~~l~~~~~~~~----~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~~ 581 (585)
+++.....+.. ...-+++.+-.++.-+|..+-..+..+++.|-++
T Consensus 389 sN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 389 SNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred HhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence 99876654431 2233667777766666777666666666555443
No 38
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=3.1e-13 Score=119.58 Aligned_cols=383 Identities=14% Similarity=0.126 Sum_probs=274.3
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHH---HHHHHHHhccC-hhHHHHHHHHHHHHhhccCchhh-
Q 007918 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTD---IMSIFEDLTQD-DSVRLLAVEGCAALGKLLEPQDC- 236 (585)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~---l~~~l~~l~~d-~~vr~~a~~~l~~l~~~~~~~~~- 236 (585)
++....+..+++++++.+..++..++|+++-..+.....-. +-+++.+++.| -++|..++.++.+++..-.....
T Consensus 84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~ki 163 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKI 163 (550)
T ss_pred hhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhh
Confidence 44555666778888999999999999999887766543333 44588888888 77999999999999887332111
Q ss_pred -hhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHH
Q 007918 237 -VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL 313 (585)
Q Consensus 237 -~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~ 313 (585)
..--+..+.++.+.++.++|..+...|..+...... ..+...-+|.+..+++..+..||+.|+.+++.++-.-....
T Consensus 164 A~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk 243 (550)
T KOG4224|consen 164 ARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARK 243 (550)
T ss_pred hhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHH
Confidence 111233345588889999999999999988776443 33445678999999999999999999999998864321111
Q ss_pred ----HHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCH--HHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhh
Q 007918 314 ----AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 387 (585)
Q Consensus 314 ----~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 387 (585)
--++++|.+..+..|++++++..+..+++.++..... +.+..--+|.+..+++++.-..-.+.+.++..+.-+-
T Consensus 244 ~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihp 323 (550)
T KOG4224|consen 244 ILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHP 323 (550)
T ss_pred HHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccccc
Confidence 1146889999999999999999999999999865432 2233445799999998886555555566666665544
Q ss_pred chhHH--hhhHHHHHHHHhcC-CChHHHHHHHHHhHHHHHhhC---hhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHH
Q 007918 388 GIDLL--SQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 461 (585)
Q Consensus 388 ~~~~~--~~~ll~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 461 (585)
+.+.. ...++..+..++.- ++..++..+...+..++.... ..++...-+|.+..++-|...+||.....++..+
T Consensus 324 lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~L 403 (550)
T KOG4224|consen 324 LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQL 403 (550)
T ss_pred CcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 43321 12345556666654 445588888888888875332 2223344578888999999999999988888887
Q ss_pred HHHhC--HHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHH--------HHhcHHHHHHhhcCCCCchHHHH
Q 007918 462 AEEFG--PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--------TCSRLLPVVINASKDRVPNIKFN 531 (585)
Q Consensus 462 ~~~~~--~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~--------~~~~i~~~l~~~l~d~~~~vR~~ 531 (585)
.-.-. ..+....++|.++.+..+.+..+|-++..++.++......-. ....+-..+...+.+....+|..
T Consensus 404 al~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hi 483 (550)
T KOG4224|consen 404 ALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHI 483 (550)
T ss_pred HhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHH
Confidence 64322 222346788999999999999999999999999876432210 12445566777777777888888
Q ss_pred HHHHHHHHHhhhc
Q 007918 532 VAKVLQSLIPIVD 544 (585)
Q Consensus 532 ~~~~l~~l~~~~~ 544 (585)
+.+++.++.+...
T Consensus 484 a~wTI~qLle~h~ 496 (550)
T KOG4224|consen 484 ARWTIQQLLEDHD 496 (550)
T ss_pred HHHHHHHHHHhCC
Confidence 8888888876543
No 39
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1e-08 Score=104.10 Aligned_cols=451 Identities=17% Similarity=0.136 Sum_probs=263.4
Q ss_pred hHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChHHHHHHHHHHHhhcCCC-chHHHHHHHHhHHHHHhh-hcccchHHH
Q 007918 125 WYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDD-MPMVRRSAASNLGKFAAT-VEPAHLKTD 202 (585)
Q Consensus 125 ~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~-~~~~~~~~~ 202 (585)
.++..+.....|.+..+|.+||+.++.+..+++....++++.-...+.+-. ++..=..++-+|+.++.. +-.....+.
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~d 420 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLED 420 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 345555555667777888888888888888888665555554444433221 133334777777777652 112334556
Q ss_pred HHHHHHHhcc-C---------hhHHHHHHHHHHHHhhccCchhhhh---hhHH-HHHHhccCCChHHHHHHHHHHHHHHH
Q 007918 203 IMSIFEDLTQ-D---------DSVRLLAVEGCAALGKLLEPQDCVA---HILP-VIVNFSQDKSWRVRYMVANQLYELCE 268 (585)
Q Consensus 203 l~~~l~~l~~-d---------~~vr~~a~~~l~~l~~~~~~~~~~~---~~~~-~l~~~~~d~~~~vR~~~~~~l~~l~~ 268 (585)
+.|++.+-+. | ..||.+|+..+.+++..+.+....+ .+.+ .+...+-|.+-.+|++|..+|.+...
T Consensus 421 VvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VG 500 (1133)
T KOG1943|consen 421 VVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVG 500 (1133)
T ss_pred HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhc
Confidence 6776665432 1 3488888888888888887754333 1222 23345568888888888887766544
Q ss_pred HhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHH-HhccCCcHHHHHHHHHHHHhhchh
Q 007918 269 AVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVK-ELSSDSSQHVRSALASVIMGMAPL 347 (585)
Q Consensus 269 ~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~-~~~~d~~~~vr~~a~~~l~~l~~~ 347 (585)
..|.-..--.++ ...+.-....|..+...+......++. +.+.++..+. .-+.+-+..+|..++.++..++..
T Consensus 501 R~~n~p~Gi~Li----s~~dy~sV~~rsNcy~~l~~~ia~~~~--y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~ 574 (1133)
T KOG1943|consen 501 RQGNFPHGISLI----STIDYFSVTNRSNCYLDLCVSIAEFSG--YREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLT 574 (1133)
T ss_pred cCCCCCCchhhh----hhcchhhhhhhhhHHHHHhHHHHhhhh--HHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh
Confidence 333211101111 111122233455555555544433321 1122222221 224455678899999999998765
Q ss_pred hCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhch----------hHHh--hhHHHHHHHHhcCC--ChHHHH
Q 007918 348 LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI----------DLLS--QSLLPAIVELAEDR--HWRVRL 413 (585)
Q Consensus 348 ~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----------~~~~--~~ll~~l~~~~~~~--~~~~r~ 413 (585)
.++ ...+..+|.+....-..+...|.++..+.+++...+.. ..+. ..++|.+.....+. ..-+|.
T Consensus 575 ~pk-~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~ 653 (1133)
T KOG1943|consen 575 EPK-YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQ 653 (1133)
T ss_pred hHH-hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHH
Confidence 553 33444455555555555678888888777777654321 1110 01222222211111 134666
Q ss_pred HHHHHhHHHHHhhC---hhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHh--CHHHHHhhhHHHHHhhhcCc-ch
Q 007918 414 AIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF--GPEWAMQHITPQVLEMINNP-HY 487 (585)
Q Consensus 414 ~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~ll~~l~~~l~~~-~~ 487 (585)
+.+..+..+...-. .+++.+....++.+.+.+++ .+|.+|..+++.++..+ +++.....++...+..++++ +.
T Consensus 654 ~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~ 732 (1133)
T KOG1943|consen 654 ATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEE 732 (1133)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHH
Confidence 66666666653321 23445556666777777777 99999999999998743 22222334666666666666 68
Q ss_pred HHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcC-CCCchHHHHHHHHHHHHHhhhch-------HHHHhhHHHHHHHh
Q 007918 488 LYRMTILRAISLLAPVMGSEITCSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQ-------SMVEKTIRPCLVEL 559 (585)
Q Consensus 488 ~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~-d~~~~vR~~~~~~l~~l~~~~~~-------~~~~~~~~~~l~~l 559 (585)
.+|.....+++.+....-.-...+.+...++.... |.++.-|...+.++.+++...+. +.+.+.++.++..+
T Consensus 733 ~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddY 812 (1133)
T KOG1943|consen 733 RIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDY 812 (1133)
T ss_pred HHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhc
Confidence 89998888887775322111134555555555444 33888899999999998877652 25566677777777
Q ss_pred cCCCCcc----HHHHHHHHHHHHHHhhc
Q 007918 560 TEDPDVD----VRFFATQAIQSIDHVMM 583 (585)
Q Consensus 560 ~~D~~~~----Vr~~a~~al~~l~~~l~ 583 (585)
..|...+ ||..|.+++..+--.++
T Consensus 813 ttd~rGDVGswVReaAm~al~~~~~~l~ 840 (1133)
T KOG1943|consen 813 TTDSRGDVGSWVREAAMKALSSLLDTLS 840 (1133)
T ss_pred ccccCccHHHHHHHHHHHHHHhhhhhhc
Confidence 7777666 57777777777665554
No 40
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.48 E-value=8.5e-10 Score=110.31 Aligned_cols=364 Identities=17% Similarity=0.168 Sum_probs=243.1
Q ss_pred hHHHHHHHHHHHHhhccCchhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhccCCh
Q 007918 215 SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNE 291 (585)
Q Consensus 215 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~d~~ 291 (585)
+.-..++..+..+.+........+.+.+.+...+.++++.||..++..++.+...-.. ......+++.+..++.|++
T Consensus 53 e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d 132 (503)
T PF10508_consen 53 EQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPD 132 (503)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCc
Confidence 3345677888888887777666788899999999999999999999998887643211 1223578999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCHH--HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHH---HHHhHHHHHHHhhc
Q 007918 292 AEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TIEQLLPIFLSLLK 366 (585)
Q Consensus 292 ~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~ 366 (585)
.+|...|+..|..+++.-..- .+.+...+.+..++..++..+|..+.+.+..++..-.... ....+++.+...+.
T Consensus 133 ~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~ 212 (503)
T PF10508_consen 133 LSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELD 212 (503)
T ss_pred HHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhc
Confidence 999999999999998753211 1123336777788877788889889988888865443211 12347888888889
Q ss_pred CCChHHHHHHHHHhHHhhhhhc-hhH-HhhhHHHHHHHHhcCC--Ch---HHH-HHHHHHhHHHHHhhChhhH---HHHH
Q 007918 367 DEFPDVRLNIISKLDQVNQVIG-IDL-LSQSLLPAIVELAEDR--HW---RVR-LAIIEYIPLLASQLGVGFF---DDKL 435 (585)
Q Consensus 367 d~~~~vr~~a~~~l~~l~~~~~-~~~-~~~~ll~~l~~~~~~~--~~---~~r-~~~~~~l~~l~~~~~~~~~---~~~l 435 (585)
+++.-|+.++++.+..++..-. .+. ....+++.+.+++.+. ++ .+. .+.+..++.++.. .+..+ .+.+
T Consensus 213 ~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~ 291 (503)
T PF10508_consen 213 SDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLELYPAF 291 (503)
T ss_pred CccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHHHHHH
Confidence 9888999999999999987322 121 2235677777766432 22 111 2333445555543 22222 2456
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHH-H-------HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcCh-
Q 007918 436 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW-A-------MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS- 506 (585)
Q Consensus 436 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~-------~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~- 506 (585)
+..+.+.+.+.+...+..|+.++|.++....... . .+.++..+.....+....+|..++.+++.+......
T Consensus 292 ~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~ 371 (503)
T PF10508_consen 292 LERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDR 371 (503)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCC
Confidence 6677788889999999999999999986432221 1 133444455556667788999999999999643322
Q ss_pred ----------HHH---HhcHHH-HHHhhcCCCCchHHHHHHHHHHHHHhhhchH-HH--HhhHHHHHHHhcCCCCccHHH
Q 007918 507 ----------EIT---CSRLLP-VVINASKDRVPNIKFNVAKVLQSLIPIVDQS-MV--EKTIRPCLVELTEDPDVDVRF 569 (585)
Q Consensus 507 ----------~~~---~~~i~~-~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~-~~--~~~~~~~l~~l~~D~~~~Vr~ 569 (585)
.+| ...-.. .+..+++.|.|++|.++.+.+..++.+.... .+ .+.+++.+..-..|++.+.+.
T Consensus 372 ~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke 451 (503)
T PF10508_consen 372 QDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKE 451 (503)
T ss_pred chHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHH
Confidence 111 111122 7888889999999999999999998764332 11 122333333333455555555
Q ss_pred HHHHHHHHHH
Q 007918 570 FATQAIQSID 579 (585)
Q Consensus 570 ~a~~al~~l~ 579 (585)
.=-..++.+.
T Consensus 452 ~K~~ii~~l~ 461 (503)
T PF10508_consen 452 AKYDIIKALA 461 (503)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 41
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=4.1e-09 Score=106.94 Aligned_cols=457 Identities=16% Similarity=0.121 Sum_probs=273.7
Q ss_pred hHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcC-cCccchhhHHhhhHhhcCC--CChH
Q 007918 83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG-EWFTARVSACGLFHIAYPS--APDI 159 (585)
Q Consensus 83 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~-~~~~~r~~a~~~l~~~~~~--~~~~ 159 (585)
....++..|.+.++|.+..||-.|+++++.+...++.+ +..+++.-+..+... +.+..=..+|.+++.++.+ +.+.
T Consensus 338 ivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~-Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 338 IVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE-LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH-HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 34456666777788999999999999999999999864 333333333332221 1122223778888887654 2445
Q ss_pred HHHHHHHHHHhhcC--------CCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHh----ccC--hhHHHHHHHHHH
Q 007918 160 LKTELRSIYTQLCQ--------DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDL----TQD--DSVRLLAVEGCA 225 (585)
Q Consensus 160 ~~~~l~~~l~~l~~--------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l----~~d--~~vr~~a~~~l~ 225 (585)
....+.|++.+.+. .....||.+|+..+-+++....+..+.+.+..+...+ .-| -++|++|..++.
T Consensus 417 ~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlq 496 (1133)
T KOG1943|consen 417 LLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQ 496 (1133)
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHH
Confidence 66788888887764 2346799999999999999887766555433333333 334 348888888877
Q ss_pred HHhhccCc------------------------------hhhhhhhHHHHHHhccC----CChHHHHHHHHHHHHHHHHhC
Q 007918 226 ALGKLLEP------------------------------QDCVAHILPVIVNFSQD----KSWRVRYMVANQLYELCEAVG 271 (585)
Q Consensus 226 ~l~~~~~~------------------------------~~~~~~~~~~l~~~~~d----~~~~vR~~~~~~l~~l~~~~~ 271 (585)
......+. ..+..+.-|.+..+... -+..+|..++.+|.++...-+
T Consensus 497 E~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~p 576 (1133)
T KOG1943|consen 497 ENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEP 576 (1133)
T ss_pred HHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhH
Confidence 66544221 01112234445444443 467899999999999877654
Q ss_pred CcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCH-H---------HH--HHhhHHHHHHhccCCc--HHHHHHH
Q 007918 272 PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP-E---------LA--IQHILPCVKELSSDSS--QHVRSAL 337 (585)
Q Consensus 272 ~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~-~---------~~--~~~i~~~l~~~~~d~~--~~vr~~a 337 (585)
+.. ....+|.++......+...|..+..+.+.+.-.+-. + .+ ...+++.+...--+.. .-.|.+.
T Consensus 577 k~~-a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~ 655 (1133)
T KOG1943|consen 577 KYL-ADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQAT 655 (1133)
T ss_pred Hhh-cccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHH
Confidence 433 345666666666666788888777777665432210 0 00 1112233322111222 3456666
Q ss_pred HHHHHhhchhhC---HHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhc--hhHHhhhHHHHHHHHhcC-CChHH
Q 007918 338 ASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVELAED-RHWRV 411 (585)
Q Consensus 338 ~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~ll~~l~~~~~~-~~~~~ 411 (585)
+..+..+...-. .+...+...-++.+.+.+.+ .+|..|.++++.++..+- .+.....++.....-+.+ .+.++
T Consensus 656 ~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~ 734 (1133)
T KOG1943|consen 656 LKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERI 734 (1133)
T ss_pred HHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHH
Confidence 666655543221 12333444444555555555 899999999999987542 111112233444444444 47788
Q ss_pred HHHHHHHhHHHHHhhChhhHHHHHHHHHHHHc-cCCchHHHHHHHHHHHHHHHHhCHH-------HHHhhhHHHHHhhhc
Q 007918 412 RLAIIEYIPLLASQLGVGFFDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPE-------WAMQHITPQVLEMIN 483 (585)
Q Consensus 412 r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~-------~~~~~ll~~l~~~l~ 483 (585)
|.....+++.+-...=...+.+.+...++... +|...+-|...+.++..+++..+.. .+.+.++..+-+...
T Consensus 735 r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYtt 814 (1133)
T KOG1943|consen 735 RRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTT 814 (1133)
T ss_pred HHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhccc
Confidence 88887777655422212222334444444433 3446788999999999999887722 233444444444444
Q ss_pred Cc----chHHHHHHHHHHHHhhhhcC-hHH----HHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 007918 484 NP----HYLYRMTILRAISLLAPVMG-SEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 542 (585)
Q Consensus 484 ~~----~~~~R~~a~~~l~~l~~~~~-~~~----~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~ 542 (585)
|. ...+|.+|+.++..+...+. ++. ..+.++-.+++-.-++....|..++.++.++...
T Consensus 815 d~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 815 DSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH 882 (1133)
T ss_pred ccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence 43 36799999999998876544 222 3344455555555566777898899988887655
No 42
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=2.8e-11 Score=107.39 Aligned_cols=377 Identities=17% Similarity=0.158 Sum_probs=256.4
Q ss_pred HHHHHHHhccC-hhHHHHHHHHHHHHhhccCchhhhh---hhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCC--cccc
Q 007918 203 IMSIFEDLTQD-DSVRLLAVEGCAALGKLLEPQDCVA---HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTR 276 (585)
Q Consensus 203 l~~~l~~l~~d-~~vr~~a~~~l~~l~~~~~~~~~~~---~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~--~~~~ 276 (585)
.-|++..+.+. ..+...+..++++++-..+.....- -+-+.+.++..|. ..||..+..|+..++..-.. ....
T Consensus 87 ~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~d~nk~kiA~ 165 (550)
T KOG4224|consen 87 NEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATFDSNKVKIAR 165 (550)
T ss_pred hhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhccccchhhhhh
Confidence 33444333333 5688999999998887766532222 2334555665554 45788888999988865211 1112
Q ss_pred cchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHH---
Q 007918 277 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--- 351 (585)
Q Consensus 277 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--- 351 (585)
..-+..+..+-+.++..||..+..+|..+....... .+..--+|++..+++..+..+|.-++.+++.++-.--..
T Consensus 166 sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~L 245 (550)
T KOG4224|consen 166 SGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKIL 245 (550)
T ss_pred ccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHH
Confidence 233445566778888899999999988876543222 122345799999999999999999999999986432211
Q ss_pred -HHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhc--hhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhCh
Q 007918 352 -ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 428 (585)
Q Consensus 352 -~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~ 428 (585)
..-+.++|.+..+..|+++.|+..|..+|..++.... .+.....-+|.+.++++++....-...+.++..++-+-++
T Consensus 246 aqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplN 325 (550)
T KOG4224|consen 246 AQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLN 325 (550)
T ss_pred HhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCc
Confidence 1235689999999999999999999999999886432 2222234579999999988766666666677666544333
Q ss_pred hhH--HHHHHHHHHHHcc-CCchHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhh-
Q 007918 429 GFF--DDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLA- 501 (585)
Q Consensus 429 ~~~--~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~- 501 (585)
+.. ...++..+..++. ..+.+++..|..+|..++..... .++....+|.+..++.|..-.+|...-.++..++
T Consensus 326 e~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 326 EVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL 405 (550)
T ss_pred ccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 221 1223444555554 45667999999999999763322 2345678999999999987666666666665554
Q ss_pred -hhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH--------HHHhhHHHHHHHhcCCCCccHHHHHH
Q 007918 502 -PVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--------MVEKTIRPCLVELTEDPDVDVRFFAT 572 (585)
Q Consensus 502 -~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--------~~~~~~~~~l~~l~~D~~~~Vr~~a~ 572 (585)
........-..++|.++.+..+.+.+||.+++.+|+++.+....- .-.+.+...|.+++...+..+|..+.
T Consensus 406 ~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~ 485 (550)
T KOG4224|consen 406 NDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIAR 485 (550)
T ss_pred ccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHH
Confidence 333333345678999999999999999999999999997654321 01134556667777777888888888
Q ss_pred HHHHHHHH
Q 007918 573 QAIQSIDH 580 (585)
Q Consensus 573 ~al~~l~~ 580 (585)
+++.++.+
T Consensus 486 wTI~qLle 493 (550)
T KOG4224|consen 486 WTIQQLLE 493 (550)
T ss_pred HHHHHHHH
Confidence 88776643
No 43
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.40 E-value=4.8e-09 Score=104.97 Aligned_cols=380 Identities=16% Similarity=0.134 Sum_probs=241.4
Q ss_pred chhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChH----HHHHHHHHHHhhc
Q 007918 97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQLC 172 (585)
Q Consensus 97 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l~ 172 (585)
+.+...-..++..|..+.+...+....+.+.+++......+++.+|..++..++.+..+-... ...++++.+..++
T Consensus 49 ~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L 128 (503)
T PF10508_consen 49 TSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL 128 (503)
T ss_pred hcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH
Confidence 334444467778888888888777777778888888888888889988888888877655431 2367899999999
Q ss_pred CCCchHHHHHHHHhHHHHHhhhccc--chHHHHHHHHHHhccC--hhHHHHHHHHHHHHhhccCch-h--hhhhhHHHHH
Q 007918 173 QDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEPQ-D--CVAHILPVIV 245 (585)
Q Consensus 173 ~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~~-~--~~~~~~~~l~ 245 (585)
.|++..|...|+.+|..++..-..- -+.+.+.+.+..++.. +.+|..+.+.+..++..-+.. . ....+++.+.
T Consensus 129 ~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll 208 (503)
T PF10508_consen 129 RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLL 208 (503)
T ss_pred cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHH
Confidence 9999999999999999998743211 1112225556665554 669998999888887654331 1 1233788888
Q ss_pred HhccCCChHHHHHHHHHHHHHHHHhCC-c-ccccchHHHHHHhccCCh--H---HH-HHHHHHHHHHHHHhhCHHHH---
Q 007918 246 NFSQDKSWRVRYMVANQLYELCEAVGP-E-PTRMDLVPAYVRLLRDNE--A---EV-RIAAAGKVTKFCRILNPELA--- 314 (585)
Q Consensus 246 ~~~~d~~~~vR~~~~~~l~~l~~~~~~-~-~~~~~l~~~l~~ll~d~~--~---~v-r~~a~~~l~~l~~~~~~~~~--- 314 (585)
+.+.+++.-+|..+++.+..++..-.. + .....+++.+.+.+.+.+ + .+ --..+..++.++.. .+..+
T Consensus 209 ~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~ 287 (503)
T PF10508_consen 209 KELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLEL 287 (503)
T ss_pred HHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHH
Confidence 888889999999999999999873111 1 122357777777765432 2 11 12233455555554 22222
Q ss_pred HHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHH--------HHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhh
Q 007918 315 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT--------IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 386 (585)
Q Consensus 315 ~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~--------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 386 (585)
.+.++..+.+...+.+...+..|+.+++.++........ ...++..+.........++|..++.+++.+...
T Consensus 288 ~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 288 YPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS 367 (503)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 245555666777888999999999999999865533222 223444444555666678888888888887643
Q ss_pred hchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHh-
Q 007918 387 IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF- 465 (585)
Q Consensus 387 ~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~- 465 (585)
-.... .+.+. .....+.+.++...... .+.+.++.|-+++|.++...+..++..-
T Consensus 368 ~~~~~-~~~i~-------------------~~~~~w~~~~~~~~~~~----~l~~~~~qPF~elr~a~~~~l~~l~~~~W 423 (503)
T PF10508_consen 368 GTDRQ-DNDIL-------------------SITESWYESLSGSPLSN----LLMSLLKQPFPELRCAAYRLLQALAAQPW 423 (503)
T ss_pred CCCCc-hHHHH-------------------HHHHHHHHHhcCCchHH----HHHHHhcCCchHHHHHHHHHHHHHhcCHH
Confidence 22111 11111 11222223333332221 7777889999999999999999998752
Q ss_pred CHHHH--HhhhHHHHHhhhcCcchHHHHHHHHHHHHhh
Q 007918 466 GPEWA--MQHITPQVLEMINNPHYLYRMTILRAISLLA 501 (585)
Q Consensus 466 ~~~~~--~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~ 501 (585)
|...+ .+.++..+++--++++...+..=..++..+.
T Consensus 424 g~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 424 GQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred HHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 11111 2445555555555555444444444444444
No 44
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.35 E-value=9.4e-09 Score=97.12 Aligned_cols=460 Identities=14% Similarity=0.094 Sum_probs=267.2
Q ss_pred ccCCchHHHHHHHHHHhccccccCCcchHHhchHHHhh-hhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhh
Q 007918 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLET-LCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA 134 (585)
Q Consensus 56 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~-l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~ 134 (585)
.+++++..|..+=.++..+... . ++... ....+.+ +-+..+..+|-.|+++|-.++.....-.+.. ++....
T Consensus 74 FQhkd~~Lrq~VY~aIkelS~~-t-edvlm-~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~~~er----~l~~a~ 146 (898)
T COG5240 74 FQHKDLYLRQCVYSAIKELSKL-T-EDVLM-GTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGETVYDFER----YLNQAF 146 (898)
T ss_pred HhcCChHHHHHHHHHHHHHhhc-c-hhhhH-HHHHHHHhhccCCccccccHHHHHHHHhcCcchhhhHHH----Hhhhhc
Confidence 5677888877655544444321 1 12111 1222222 2233445788888888877765433322222 223333
Q ss_pred cCcCccchhhHHhhhHhhcCCCChH---HHHHHHHHHHhhcCCC------------chHHHHHHHHhHHHHHhhhcccch
Q 007918 135 AGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDD------------MPMVRRSAASNLGKFAATVEPAHL 199 (585)
Q Consensus 135 ~~~~~~~r~~a~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~------------~~~vr~~a~~~l~~l~~~~~~~~~ 199 (585)
-++...+|.+|...-..+++..... ...+..+....+-+.+ ++..+-.|...|.+.-..- ...
T Consensus 147 Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~d--kma 224 (898)
T COG5240 147 VSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTD--KMA 224 (898)
T ss_pred cccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhccc--HHH
Confidence 3555555555443333333322111 1122233333322221 2333333333333322210 001
Q ss_pred HHHHHHHHHHhccChh--HHHHHHHHHHHHhhccCc-hhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHh-CCccc
Q 007918 200 KTDIMSIFEDLTQDDS--VRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV-GPEPT 275 (585)
Q Consensus 200 ~~~l~~~l~~l~~d~~--vr~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~-~~~~~ 275 (585)
.+.++..+..... ...+.+..+..+.+.+.. ......+.|++...++|+-.-|-..+++.+..++..- +++.
T Consensus 225 ---~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~- 300 (898)
T COG5240 225 ---QLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQF- 300 (898)
T ss_pred ---HHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHH-
Confidence 1122222222211 122233333333333332 2345667888888899988888888888888776543 3322
Q ss_pred ccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHH
Q 007918 276 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE 355 (585)
Q Consensus 276 ~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 355 (585)
....+..+..+++......|-.|++.|.+++-..+... ...-+-+..+.+|.|..+-.-|+ ..+.+ .|.+...+
T Consensus 301 ~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv--~vcN~evEsLIsd~Nr~IstyAI---TtLLK-TGt~e~id 374 (898)
T COG5240 301 VDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV--SVCNKEVESLISDENRTISTYAI---TTLLK-TGTEETID 374 (898)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee--eecChhHHHHhhcccccchHHHH---HHHHH-cCchhhHH
Confidence 34556677778888888899999999999987655432 22234455667777655544443 33333 24566678
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHh-cCCChHHHHHHHHHhHHHHHhhChhhHHHH
Q 007918 356 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDK 434 (585)
Q Consensus 356 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~ 434 (585)
.++..+.+++.|-+.+.+..++.++..++-.++.++. .++..+...+ +...+..+..+++++..+.+..+. ..+.
T Consensus 375 rLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~--s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~--skEr 450 (898)
T COG5240 375 RLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKL--SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPD--SKER 450 (898)
T ss_pred HHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHH--HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCch--HHHH
Confidence 8888888888888888888888888888888877653 5666666644 455678888888888888876543 2455
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHH
Q 007918 435 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLL 514 (585)
Q Consensus 435 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~ 514 (585)
.+..+-.++.|..+. +-++..|+-+.+..+...-....+.++.+.+-=.|..+|.+|+.++..++-+.........+.
T Consensus 451 aLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~ 528 (898)
T COG5240 451 ALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVE 528 (898)
T ss_pred HHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHH
Confidence 666677777776653 334555555544322111112344455555445677899999999998887666555567778
Q ss_pred HHHHhhcCCCCchHHHHHHHHHHHHH
Q 007918 515 PVVINASKDRVPNIKFNVAKVLQSLI 540 (585)
Q Consensus 515 ~~l~~~l~d~~~~vR~~~~~~l~~l~ 540 (585)
..+.++++|.+.+||..|..++..+-
T Consensus 529 ~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 529 NALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 88889999999999999998888774
No 45
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=5.2e-07 Score=93.24 Aligned_cols=517 Identities=13% Similarity=0.107 Sum_probs=310.4
Q ss_pred cCCchHHHHHHHHHHhccccccCCcchHHhchHH-HhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhh-
Q 007918 57 NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP-LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA- 134 (585)
Q Consensus 57 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~-l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~- 134 (585)
....+++..++..++..+.+. +..+.+.+... +..+++-+-..+-..+.+.+..+++.+++ ....++.|-++.++
T Consensus 322 ~s~~~e~~q~a~q~l~~il~~--sv~~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~-~s~~~l~~~L~~l~~ 398 (1176)
T KOG1248|consen 322 ESLIEELVQAASQSLKEILKE--SVTVIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKCGE-LSGPELTKTLEGLCD 398 (1176)
T ss_pred hcccHHHHHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhh-hcCHHHHHHHHHHHH
Confidence 345667767777777666441 12222333333 55566556666666677777777777766 34445555555444
Q ss_pred --cCcCccchhhHHhhhHhhcCCCChHHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhcc
Q 007918 135 --AGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ 212 (585)
Q Consensus 135 --~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~ 212 (585)
.++....+...-.++|.....+|++..-.++|+=. ..+.....|.=..=.|........-..+.+++.|+...+..
T Consensus 399 lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl--~~~s~~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~sl~~ 476 (1176)
T KOG1248|consen 399 LRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNL--HAESLSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQL 476 (1176)
T ss_pred hhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhc--cccccccchhHhHHHHHHhhccCcHHHHHHHHHHHHHHHHH
Confidence 34455556555667787788888877666666644 22222222322222222222222224567778887776643
Q ss_pred C-h------h-H---HHHHHHHHHHHhhccCc----hhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCC-----
Q 007918 213 D-D------S-V---RLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----- 272 (585)
Q Consensus 213 d-~------~-v---r~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~----- 272 (585)
- + . + +-...+.+.-+-.++.. ......+.|.+...+.... ..|...+..|..+.....+
T Consensus 477 K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~~~a~ 555 (1176)
T KOG1248|consen 477 KAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRP-ELRETICNSLRMLVEQNKPSSDAA 555 (1176)
T ss_pred HHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCcchHH
Confidence 2 1 1 1 11122222222122111 2223446666666555544 8899999999888776311
Q ss_pred ------cccccchHHHHHHhccCCh------HHHHHHHHHHHH-HHHHhhCHHHHHHhhHHHHHHhccCCcHHH----HH
Q 007918 273 ------EPTRMDLVPAYVRLLRDNE------AEVRIAAAGKVT-KFCRILNPELAIQHILPCVKELSSDSSQHV----RS 335 (585)
Q Consensus 273 ------~~~~~~l~~~l~~ll~d~~------~~vr~~a~~~l~-~l~~~~~~~~~~~~i~~~l~~~~~d~~~~v----r~ 335 (585)
......++|.+++...... ...|...++... ......+.+ ....+...+..+..+.+..+ +.
T Consensus 556 e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~d-v~~~l~~s~~e~as~~~~s~~~~~~~ 634 (1176)
T KOG1248|consen 556 ENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTD-VVGSLKDSAGELASDLDESVASFKTL 634 (1176)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHhHhccchhhhhhHHHH
Confidence 0112357888888765432 334444444444 223332332 22444455555566654433 44
Q ss_pred HHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhch----hHHhhhHHHHHHHHhcCCChHH
Q 007918 336 ALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI----DLLSQSLLPAIVELAEDRHWRV 411 (585)
Q Consensus 336 ~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~ll~~l~~~~~~~~~~~ 411 (585)
+.+..+..++.....+.+. .+..+.....+..+..++..+...|..++..-.- +...+.+...+.+-+++.....
T Consensus 635 slLdl~~~~a~~~~e~~vs-~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~ 713 (1176)
T KOG1248|consen 635 SLLDLLIALAPVQTESQVS-KLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPA 713 (1176)
T ss_pred HHHHHHHhhhccccchhHH-HHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHH
Confidence 4555555555555443332 2333333444555789999999999998876221 1223456666666777777888
Q ss_pred HHHHHHHhHHHHHhhChhh--HHHHHHHHHHHHccCCchHHHHHHHHHHHHHH--HH---hCHHH---HHhhhHHHHHhh
Q 007918 412 RLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLA--EE---FGPEW---AMQHITPQVLEM 481 (585)
Q Consensus 412 r~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~--~~---~~~~~---~~~~ll~~l~~~ 481 (585)
|...+.++..+.+..+.++ +....+|-++-.+.+.+..-|..|..+|-.++ .. .|.+. ..+.+++.+...
T Consensus 714 ~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isag 793 (1176)
T KOG1248|consen 714 QASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAG 793 (1176)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhh
Confidence 9999999999999888443 22334444444458889999999999998887 22 23222 345566666655
Q ss_pred hcCcchHHHHHHHHHHHHhhhh---cChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH---HHHhhHHHH
Q 007918 482 INNPHYLYRMTILRAISLLAPV---MGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPC 555 (585)
Q Consensus 482 l~~~~~~~R~~a~~~l~~l~~~---~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~~~~~ 555 (585)
+......++...+-++..+... ...+.+.+.++..+..++....+.++.+|+..+..++..++.. .+.+.++|.
T Consensus 794 l~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~s 873 (1176)
T KOG1248|consen 794 LVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPS 873 (1176)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHH
Confidence 5555555555556777777653 3345577888999999999999999999999999999888775 455678999
Q ss_pred HHHhcCCCCccHHHHHHHHHHHHHHh
Q 007918 556 LVELTEDPDVDVRFFATQAIQSIDHV 581 (585)
Q Consensus 556 l~~l~~D~~~~Vr~~a~~al~~l~~~ 581 (585)
+..+..|....+|..+...++.+.+-
T Consensus 874 ll~ls~d~k~~~r~Kvr~LlekLirk 899 (1176)
T KOG1248|consen 874 LLALSHDHKIKVRKKVRLLLEKLIRK 899 (1176)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888887653
No 46
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=2.2e-09 Score=105.49 Aligned_cols=512 Identities=14% Similarity=0.132 Sum_probs=304.0
Q ss_pred ccHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhccccccc-ccCCchHHHHHHHHHHhccccccCCcchHHhc
Q 007918 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL 87 (585)
Q Consensus 9 ~~i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 87 (585)
-.+.++...+.++-++.|..|++.+-.- -.+|. ....+.|=+.. ....+-+..+.+=-.+.+.+. +.|+-.-..
T Consensus 13 ~ei~elks~l~s~~~~kr~~a~kkvIa~-Mt~G~--DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~--~~P~~a~~a 87 (734)
T KOG1061|consen 13 GEIPELKSQLNSQSKEKRKDAVKKVIAY-MTVGK--DVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAK--GKPDLAILA 87 (734)
T ss_pred hhchHHHHHhhhhhhhhHHHHHHHHHhc-CccCc--chHhhhHHHHhhcccCCchHHHHHHHHHHHhhc--cCchHHHhh
Confidence 3578888888888888888888643211 12442 22245555544 333445665555556666655 345555556
Q ss_pred hHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChH-HHHHHHH
Q 007918 88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRS 166 (585)
Q Consensus 88 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-~~~~l~~ 166 (585)
.+.+.+-..|++|.+|..|++.++.+ +.+.+..++..-+.+..+|+++.+|..++.....+...-++. +-..+.+
T Consensus 88 vnt~~kD~~d~np~iR~lAlrtm~~l----~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~ 163 (734)
T KOG1061|consen 88 VNTFLKDCEDPNPLIRALALRTMGCL----RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVD 163 (734)
T ss_pred hhhhhccCCCCCHHHHHHHhhceeeE----eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhH
Confidence 66777777899999999988887654 445666777777778888999999999988888777655442 4566788
Q ss_pred HHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC-hh-HHHHHHHHHHHHhhccCchh-hhhhhHHH
Q 007918 167 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD-DS-VRLLAVEGCAALGKLLEPQD-CVAHILPV 243 (585)
Q Consensus 167 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d-~~-vr~~a~~~l~~l~~~~~~~~-~~~~~~~~ 243 (585)
.+..++.|++|.|-..|..++..+.+.-..........+.+.+++.. .+ .-..-+..+..++...+++. -...+...
T Consensus 164 ~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r 243 (734)
T KOG1061|consen 164 ALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICER 243 (734)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHH
Confidence 88888889999999999999999987654322222223333333333 11 22233445555555555432 23345555
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHH---------
Q 007918 244 IVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--------- 312 (585)
Q Consensus 244 l~~~~~d~~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~--------- 312 (585)
+...++..+..|-..+.+.+-.....+.. +.....+-+.+..++... +++...++..+.-+....+.-
T Consensus 244 ~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~-~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff 322 (734)
T KOG1061|consen 244 LTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSE-SEIQYVALRNINLILQKRPEILKVEIKVFF 322 (734)
T ss_pred hhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeeccc-chhhHHHHhhHHHHHHhChHHHHhHhHeee
Confidence 55556666666666666666655554433 111122333333333333 366666666665554432210
Q ss_pred -----------------------HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCC
Q 007918 313 -----------------------LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF 369 (585)
Q Consensus 313 -----------------------~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~ 369 (585)
....++++-+.....+.+.+.-+.++++++.++-..... +..++.+..+++-..
T Consensus 323 ~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---~~cv~~lLell~~~~ 399 (734)
T KOG1061|consen 323 CKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLELLETKV 399 (734)
T ss_pred eecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHHHhhcc
Confidence 011234444444555566666667778888877655433 566777777777555
Q ss_pred hHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcC-CChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCch
Q 007918 370 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVY 448 (585)
Q Consensus 370 ~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~ 448 (585)
..|...++..+..+....+... +.+.+.+...+.+ .+++.|.+.++.++..+..+.. ..+++..+..-+.|+..
T Consensus 400 ~yvvqE~~vvi~dilRkyP~~~--~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~---a~elL~~f~en~~dE~~ 474 (734)
T KOG1061|consen 400 DYVVQEAIVVIRDILRKYPNKY--ESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN---ALELLESFLENFKDETA 474 (734)
T ss_pred cceeeehhHHHHhhhhcCCCch--hhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc---HHHHHHHHHhhcccchH
Confidence 5565666666666555544321 3455555443333 5678899999999998888765 34577777788888888
Q ss_pred HHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhh-cCc-chHHHHHHHHHHHHhhhhcChHH----HHhcHHHHHHhhcC
Q 007918 449 SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI-NNP-HYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASK 522 (585)
Q Consensus 449 ~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l-~~~-~~~~R~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~l~ 522 (585)
.|+...+.+.-++.-..+. ..+..+..++... .|. ++.+|..++....-+.. ++.. ..... |.+-....
T Consensus 475 ~Vql~LLta~ik~Fl~~p~--~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs~--~~~~a~~v~~~~k-P~is~~~~ 549 (734)
T KOG1061|consen 475 EVQLELLTAAIKLFLKKPT--ETQELLQGVLPLATADTDNPDLRDRGLIYWRLLSE--DPLIAKDVVLAEK-PLISEETD 549 (734)
T ss_pred HHHHHHHHHHHHHHhcCCc--cHHHHHHHHHhhhhccccChhhhhhHHHHHHHhhc--CHHHHHHHHhcCC-CccccCCC
Confidence 8877666555444332232 1344555555543 333 46788888776666652 2211 11111 33333333
Q ss_pred CCCchHHHHHHHHHHHHHhhh
Q 007918 523 DRVPNIKFNVAKVLQSLIPIV 543 (585)
Q Consensus 523 d~~~~vR~~~~~~l~~l~~~~ 543 (585)
..+|.+-.....-++.+.+.+
T Consensus 550 ~~~p~~le~l~~~i~tlssVY 570 (734)
T KOG1061|consen 550 SLDPTLLEELLCDIGTLSSVY 570 (734)
T ss_pred CCCchHHHHHHHhhcccccee
Confidence 356667666666666666554
No 47
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.32 E-value=1.7e-08 Score=95.49 Aligned_cols=468 Identities=12% Similarity=0.066 Sum_probs=268.0
Q ss_pred HHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChHHHHH
Q 007918 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE 163 (585)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~ 163 (585)
+..+.-.+.++.+++|+..|+..-.++..+..... +.+. ..-.++..+.+.....+|-.|...+-.++..- ....
T Consensus 63 at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~te-dvlm-~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~---tv~~ 137 (898)
T COG5240 63 ATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTE-DVLM-GTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGE---TVYD 137 (898)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcch-hhhH-HHHHHHHhhccCCccccccHHHHHHHHhcCcc---hhhh
Confidence 44566667888999999999988888877754322 2111 11112222323233456666665555544432 2233
Q ss_pred HHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcc--cchHHHHHHHHHHhccC----------hh----HHHHHHHHHHHH
Q 007918 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQD----------DS----VRLLAVEGCAAL 227 (585)
Q Consensus 164 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d----------~~----vr~~a~~~l~~l 227 (585)
+-.++.+..-++.+.+|.+|.-.-..+...... ..+.++.......+.+. ++ .+..|+..+..+
T Consensus 138 ~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~ 217 (898)
T COG5240 138 FERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQS 217 (898)
T ss_pred HHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHH
Confidence 334555666677777777665444433321100 00111111111111111 00 122222222111
Q ss_pred hhccCchhhhhhhHHHHHH-hccCCChHHHHHHHHHHHHHHHHhCC-cccccchHHHHHHhccCChHHHHHHHHHHHHHH
Q 007918 228 GKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGP-EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF 305 (585)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~-~~~d~~~~vR~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l 305 (585)
-. .+ +..+..+.+ +....+-.-..+.......+...+.. .....++.|.+-..++|.-..|...+++.+..+
T Consensus 218 kr---~d---kma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~ 291 (898)
T COG5240 218 KR---TD---KMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCAL 291 (898)
T ss_pred hc---cc---HHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHH
Confidence 10 00 001111111 11111111111112222222222211 122235777888888888888999999999988
Q ss_pred HHhh-CHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhh
Q 007918 306 CRIL-NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 384 (585)
Q Consensus 306 ~~~~-~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 384 (585)
+... +++.+ ...+..+..+++.+....|-+|.+.+.+++...+... ...-+-+..++.|.+..+-.-|+..|-.
T Consensus 292 ~~~nv~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv--~vcN~evEsLIsd~Nr~IstyAITtLLK-- 366 (898)
T COG5240 292 SEENVGSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV--SVCNKEVESLISDENRTISTYAITTLLK-- 366 (898)
T ss_pred HHhccCHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee--eecChhHHHHhhcccccchHHHHHHHHH--
Confidence 7654 55544 6677888889999999999999999999987665322 1223556777888876665555554433
Q ss_pred hhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHH-ccCCchHHHHHHHHHHHHHHH
Q 007918 385 QVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LQDKVYSIRDAAANNLKRLAE 463 (585)
Q Consensus 385 ~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~ 463 (585)
.|.+.-...++..+..++.|-+...+.-+++++..++-.++.+ ...++..+.+. ++....+.+.+++.++..+.+
T Consensus 367 --TGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k--~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~ 442 (898)
T COG5240 367 --TGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSK--KLSYLDFLGSSLLQEGGLEFKKYMVDAISDAME 442 (898)
T ss_pred --cCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHH--HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 2433333566666666666655556666777777776666543 22344554443 456678888999999988888
Q ss_pred HhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcC----hHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHH
Q 007918 464 EFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG----SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 539 (585)
Q Consensus 464 ~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~----~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l 539 (585)
+.+. ..+..+..+...+.|..+. +-++..++-+.+..+ +..+..+++..++ =++.-||.+|+.+|..+
T Consensus 443 ~~p~--skEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~i----LEN~ivRsaAv~aLskf 514 (898)
T COG5240 443 NDPD--SKERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYVRHIYNRLI----LENNIVRSAAVQALSKF 514 (898)
T ss_pred hCch--HHHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHHHHHHHHHH----HhhhHHHHHHHHHHHHh
Confidence 6544 2456677777777776543 334444554544322 2224444444333 35788999999999999
Q ss_pred HhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007918 540 IPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 579 (585)
Q Consensus 540 ~~~~~~~~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~ 579 (585)
..........+.+...|.++++|.|.+||..|.-+++.+.
T Consensus 515 ~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 515 ALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred ccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 8877777777889999999999999999999999888765
No 48
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=7e-08 Score=95.16 Aligned_cols=419 Identities=15% Similarity=0.141 Sum_probs=249.0
Q ss_pred ccCCchHHHHHHHHHHhccccccCCcchHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhc
Q 007918 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA 135 (585)
Q Consensus 56 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~ 135 (585)
+++++.-|.-.+..++|+++ .++..+.+.|.++.+++..++.||+.|+.|..++....+. ..+++++-..++..
T Consensus 116 L~s~nq~vVglAL~alg~i~----s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~--l~e~f~~~~~~lL~ 189 (866)
T KOG1062|consen 116 LNSSNQYVVGLALCALGNIC----SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD--LVEHFVIAFRKLLC 189 (866)
T ss_pred ccCCCeeehHHHHHHhhccC----CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch--HHHHhhHHHHHHHh
Confidence 44445555555666677764 4788899999999999999999999999999999887764 56667777777888
Q ss_pred CcCccchhhHHhhhHhhcCCCChH--HHHHHHH----HHHhhcC-----------CCchHHHHHHHHhHHHHHhhhcccc
Q 007918 136 GEWFTARVSACGLFHIAYPSAPDI--LKTELRS----IYTQLCQ-----------DDMPMVRRSAASNLGKFAATVEPAH 198 (585)
Q Consensus 136 ~~~~~~r~~a~~~l~~~~~~~~~~--~~~~l~~----~l~~l~~-----------d~~~~vr~~a~~~l~~l~~~~~~~~ 198 (585)
+++..|-.++..++-.++..-++. +.+.+.+ .+.++.. -++|..+..+...|+-+.+.. ..
T Consensus 190 ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d--~d 267 (866)
T KOG1062|consen 190 EKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQND--AD 267 (866)
T ss_pred hcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCC--cc
Confidence 888888888877777777765442 2222333 3333332 246777777887777776642 22
Q ss_pred hHHHHHHHHHHhccC-h-------hHHHHHHHHHHHHhhccCchhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHh
Q 007918 199 LKTDIMSIFEDLTQD-D-------SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 270 (585)
Q Consensus 199 ~~~~l~~~l~~l~~d-~-------~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~ 270 (585)
..+.+..++.+.+.. | .+-..++ ..|....+.......-..++-+++.+++..+|..++..|..+...=
T Consensus 268 aSd~M~DiLaqvatntdsskN~GnAILYE~V---~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d 344 (866)
T KOG1062|consen 268 ASDLMNDILAQVATNTDSSKNAGNAILYECV---RTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQD 344 (866)
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHH---HHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCC
Confidence 333333344444332 1 1333333 3333444444455556677777777777788888888877765431
Q ss_pred CCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCH
Q 007918 271 GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK 350 (585)
Q Consensus 271 ~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~ 350 (585)
+ ...++=-..++++++|+|..+|+.|++....+...-+-..+.++++.+ +...++++|..++.-+..+++.+.+
T Consensus 345 ~--~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~f----L~~~d~~~k~~~as~I~~laEkfaP 418 (866)
T KOG1062|consen 345 P--TAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEF----LESSDEDFKADIASKIAELAEKFAP 418 (866)
T ss_pred c--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHH----HHhccHHHHHHHHHHHHHHHHhcCC
Confidence 1 111233456788999999999999999999998765444444444444 4445788899999888888887764
Q ss_pred HH--HHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhh-chhH-H-hhhHHHHHHH--HhcCCChHHHHHHHHHhHHHH
Q 007918 351 DA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GIDL-L-SQSLLPAIVE--LAEDRHWRVRLAIIEYIPLLA 423 (585)
Q Consensus 351 ~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~-~-~~~ll~~l~~--~~~~~~~~~r~~~~~~l~~l~ 423 (585)
+. +.+.+ .+.+...-..|+..+...+-.+...- ++.. + ...+.-.+.. +..-++...-..+.++|++..
T Consensus 419 ~k~W~idtm----l~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYG 494 (866)
T KOG1062|consen 419 DKRWHIDTM----LKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYG 494 (866)
T ss_pred cchhHHHHH----HHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhh
Confidence 33 23333 33333333344544444444443222 2211 0 0011111111 111223334566778887766
Q ss_pred HhhCh--------hhHHHHHHHHHHHHcc--CCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHH
Q 007918 424 SQLGV--------GFFDDKLGALCMQWLQ--DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTI 493 (585)
Q Consensus 424 ~~~~~--------~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a 493 (585)
..+=. ..-.++++..+.+.+. ..+..++..|+.++.++...++.. .+.+-..+...-.+-+...++.|
T Consensus 495 dlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~--~~ri~~lI~~~~~s~~~elQQRa 572 (866)
T KOG1062|consen 495 DLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS--SERIKQLISSYKSSLDTELQQRA 572 (866)
T ss_pred HHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHHhcccccHHHHHHH
Confidence 43210 1122345555555443 233778888888888887766543 23333333444445566666666
Q ss_pred HHHH
Q 007918 494 LRAI 497 (585)
Q Consensus 494 ~~~l 497 (585)
++.=
T Consensus 573 ~E~~ 576 (866)
T KOG1062|consen 573 VEYN 576 (866)
T ss_pred HHHH
Confidence 6643
No 49
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.6e-08 Score=99.05 Aligned_cols=452 Identities=15% Similarity=0.097 Sum_probs=262.3
Q ss_pred HHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhccccccc-ccCCchHHHHHHHHHHhccccccCCcchHHhchH
Q 007918 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP 89 (585)
Q Consensus 11 i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 89 (585)
+...++...+.|.++|+-.--.|-.-|+.-. +-.. --+-.++. +.|+|+.+|.-+.+.|..+ +-+..++.++-
T Consensus 73 Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqp-dLAL-LSIntfQk~L~DpN~LiRasALRvlSsI----Rvp~IaPI~ll 146 (968)
T KOG1060|consen 73 FPAVVKNVASKNIEVKKLVYVYLLRYAEEQP-DLAL-LSINTFQKALKDPNQLIRASALRVLSSI----RVPMIAPIMLL 146 (968)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcCC-Ccee-eeHHHHHhhhcCCcHHHHHHHHHHHHhc----chhhHHHHHHH
Confidence 3444555666677776666555544443111 0000 01223333 7899999999999998876 22445566666
Q ss_pred HHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChHHHHHHHHHHH
Q 007918 90 PLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYT 169 (585)
Q Consensus 90 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~ 169 (585)
.+.+...|+.+.||+.|+.+|..+-..- +++ ...+...+..+..|..+-|--+|..++..+++.--+ ....-..-++
T Consensus 147 AIk~~~~D~s~yVRk~AA~AIpKLYsLd-~e~-k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerld-LIHknyrklC 223 (968)
T KOG1060|consen 147 AIKKAVTDPSPYVRKTAAHAIPKLYSLD-PEQ-KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLD-LIHKNYRKLC 223 (968)
T ss_pred HHHHHhcCCcHHHHHHHHHhhHHHhcCC-hhh-HHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHH-HhhHHHHHHH
Confidence 6788889999999999999999886533 332 237889999999999998888888888877754211 1111112234
Q ss_pred hhcCCCchHHHHHHHHhHHHHHhhhcc-c------------------------------chHHHHHHHHHHhccC--hhH
Q 007918 170 QLCQDDMPMVRRSAASNLGKFAATVEP-A------------------------------HLKTDIMSIFEDLTQD--DSV 216 (585)
Q Consensus 170 ~l~~d~~~~vr~~a~~~l~~l~~~~~~-~------------------------------~~~~~l~~~l~~l~~d--~~v 216 (585)
+++-|-+.+-+..+...|.+.+...-+ + .-...++....-++++ +.|
T Consensus 224 ~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sV 303 (968)
T KOG1060|consen 224 RLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSV 303 (968)
T ss_pred hhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHH
Confidence 444555566666677777777654211 1 0011122222223333 445
Q ss_pred HHHHHHHHHHHhhccCchhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhc-cCCh-HHH
Q 007918 217 RLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL-RDNE-AEV 294 (585)
Q Consensus 217 r~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll-~d~~-~~v 294 (585)
-.++++.+..++... . ...+...+..++.. +..++...++.+..++..- +.-+.|++...+ ...| ..+
T Consensus 304 VmA~aql~y~lAP~~---~-~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~-----~~lF~P~lKsFfv~ssDp~~v 373 (968)
T KOG1060|consen 304 VMAVAQLFYHLAPKN---Q-VTKIAKALVRLLRS-NREVQYVVLQNIATISIKR-----PTLFEPHLKSFFVRSSDPTQV 373 (968)
T ss_pred HHHHHhHHHhhCCHH---H-HHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcc-----hhhhhhhhhceEeecCCHHHH
Confidence 555555555554322 1 22222223333322 3346666666666665431 222334443332 1222 234
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHH
Q 007918 295 RIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRL 374 (585)
Q Consensus 295 r~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~ 374 (585)
..-=++.|..++..-.. ..|++-+....++.+.++-..++++||.++...+ .+.+..+..+..++...+..|-.
T Consensus 374 k~lKleiLs~La~esni----~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~--sv~~tCL~gLv~Llsshde~Vv~ 447 (968)
T KOG1060|consen 374 KILKLEILSNLANESNI----SEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG--SVTDTCLNGLVQLLSSHDELVVA 447 (968)
T ss_pred HHHHHHHHHHHhhhccH----HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC--chhhHHHHHHHHHHhcccchhHH
Confidence 44444555555543222 4455556666677776788888888888887665 23456677777788877888888
Q ss_pred HHHHHhHHhhhhhchhHHhhhHHHHHHHHhcC-CChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHH
Q 007918 375 NIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDA 453 (585)
Q Consensus 375 ~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~ 453 (585)
.++..+..+.+.-+.+.. .++..+..++.. .-+..|...++.++..+.... .+.+.++..+.+-+.|+..+||.+
T Consensus 448 eaV~vIk~Llq~~p~~h~--~ii~~La~lldti~vp~ARA~IiWLige~~e~vp--ri~PDVLR~laksFs~E~~evKlQ 523 (968)
T KOG1060|consen 448 EAVVVIKRLLQKDPAEHL--EILFQLARLLDTILVPAARAGIIWLIGEYCEIVP--RIAPDVLRKLAKSFSDEGDEVKLQ 523 (968)
T ss_pred HHHHHHHHHHhhChHHHH--HHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcc--hhchHHHHHHHHhhccccchhhHH
Confidence 888888887765444331 345555555533 235677777777777665532 234456666677778888999988
Q ss_pred HHHHHHHHHHHhCHHHHHhhhHHHHHhhh-cCcchHHHHHH
Q 007918 454 AANNLKRLAEEFGPEWAMQHITPQVLEMI-NNPHYLYRMTI 493 (585)
Q Consensus 454 a~~~l~~l~~~~~~~~~~~~ll~~l~~~l-~~~~~~~R~~a 493 (585)
+++.-..+.-....+ .+.+..++.++. -|.++.+|..+
T Consensus 524 ILnL~aKLyl~~~~~--~kll~~Yv~~L~~yD~sYDiRDRa 562 (968)
T KOG1060|consen 524 ILNLSAKLYLTNIDQ--TKLLVQYVFELARYDLSYDIRDRA 562 (968)
T ss_pred HHHhhhhheEechhh--HHHHHHHHHHHhccCCCcchhHHH
Confidence 888777765432222 233455555543 46677666654
No 50
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=6.4e-10 Score=106.52 Aligned_cols=304 Identities=16% Similarity=0.150 Sum_probs=192.3
Q ss_pred hccCCChHHHHHHHHHHHHHHHHhCC-cccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHh
Q 007918 247 FSQDKSWRVRYMVANQLYELCEAVGP-EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL 325 (585)
Q Consensus 247 ~~~d~~~~vR~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~ 325 (585)
..++.+...|.........++..-.. ....+.+...+..+..|.+..||..|+++|-++.+.+. ....+.....+.
T Consensus 166 ~~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k---L~~~~Y~~A~~~ 242 (823)
T KOG2259|consen 166 RSSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFK---LSKACYSRAVKH 242 (823)
T ss_pred hhhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccccc---ccHHHHHHHHHH
Confidence 34455556666666555544432211 11123456667788889999999999999988887332 124455666788
Q ss_pred ccCCcHHHHHHHHHHHHhhchhhC--------HHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHH
Q 007918 326 SSDSSQHVRSALASVIMGMAPLLG--------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 397 (585)
Q Consensus 326 ~~d~~~~vr~~a~~~l~~l~~~~~--------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll 397 (585)
++|.+..||.+|++.+..++...+ .....+..+.-+...+.|.+..||-.|+++||.+-... . +.+.
T Consensus 243 lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS-e----e~i~ 317 (823)
T KOG2259|consen 243 LSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS-E----EIIQ 317 (823)
T ss_pred hcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH-H----HHHH
Confidence 899999999999988887776662 12234567777888899999999999999999876542 1 1222
Q ss_pred HHHHH-Hhc-CCChHHH---HHHHHHhHHHHH------hhChhhHH---HHHH-----HHHHHHccCCchHHHHHHHHHH
Q 007918 398 PAIVE-LAE-DRHWRVR---LAIIEYIPLLAS------QLGVGFFD---DKLG-----ALCMQWLQDKVYSIRDAAANNL 458 (585)
Q Consensus 398 ~~l~~-~~~-~~~~~~r---~~~~~~l~~l~~------~~~~~~~~---~~l~-----~~l~~~l~d~~~~vr~~a~~~l 458 (585)
.++.+ ++. +.-|+.. -.....=+.++. ..+.+... ..++ ..+...++|+-.+||.+|+..+
T Consensus 318 QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl 397 (823)
T KOG2259|consen 318 QTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASL 397 (823)
T ss_pred HHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHH
Confidence 33322 221 1112211 111111111110 00111100 1122 3466778899999999999999
Q ss_pred HHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHH
Q 007918 459 KRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS 538 (585)
Q Consensus 459 ~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~ 538 (585)
+.++.. .+. |...-+..+..+++|....+|.-|+.++..|+.... ..+..++.++..+.|.+++||.+.-..|+.
T Consensus 398 ~~La~s-sP~-FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 398 CSLATS-SPG-FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHcC-CCC-cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 988763 222 556678889999999999999999999999987633 447788899999999999999888877776
Q ss_pred HHhhhch---HHHHhhHHHHHHHhcCCCC
Q 007918 539 LIPIVDQ---SMVEKTIRPCLVELTEDPD 564 (585)
Q Consensus 539 l~~~~~~---~~~~~~~~~~l~~l~~D~~ 564 (585)
.- .... ......++..|...-+|.+
T Consensus 473 ~~-~~d~~~i~m~v~~lL~~L~kyPqDrd 500 (823)
T KOG2259|consen 473 AR-VSDLECIDMCVAHLLKNLGKYPQDRD 500 (823)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhhCCCCcH
Confidence 42 1111 1233445555555555544
No 51
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.31 E-value=1.8e-10 Score=103.81 Aligned_cols=185 Identities=18% Similarity=0.264 Sum_probs=134.8
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhCh----hhHHH---HHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCH
Q 007918 395 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV----GFFDD---KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 467 (585)
Q Consensus 395 ~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~----~~~~~---~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 467 (585)
.+.+.+...-.+.+|..|..++..+..+...... ..+.+ .+.+.+...+.|....|-..|+.+++.++..+|.
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~ 86 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS 86 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 4445554555788999999999999999876511 12222 2335667778888899999999999999999887
Q ss_pred HH--HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcH-HHHHHhhcCCCCchHHHHHHHHHHHHHhhhc
Q 007918 468 EW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRL-LPVVINASKDRVPNIKFNVAKVLQSLIPIVD 544 (585)
Q Consensus 468 ~~--~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i-~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~ 544 (585)
.+ +.+.++|.++..+.+++..+|..|..++..++..++. ...+ .+.+....+++++.+|..++.++..++...+
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~---~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY---SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 64 4588999999999999999999999999999998872 1344 7888889999999999999999999988877
Q ss_pred --hH-----HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 007918 545 --QS-----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 582 (585)
Q Consensus 545 --~~-----~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~~l 582 (585)
.. .....+.+.+..++.|++++||..|.+++..+.+..
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 11 234679999999999999999999999999998763
No 52
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.25 E-value=1.2e-06 Score=92.59 Aligned_cols=525 Identities=15% Similarity=0.121 Sum_probs=293.6
Q ss_pred HHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhccccccc-ccCCchHHHHHHHHHHhccccccCCcchHHhchH
Q 007918 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP 89 (585)
Q Consensus 11 i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 89 (585)
++.++..+..+-...|..|+++++.+......--........+.. ..|..-.||.++.+.+|.++-+ .++.......
T Consensus 818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~--~~e~~~qyY~ 895 (1692)
T KOG1020|consen 818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLS--IPELIFQYYD 895 (1692)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhc--cHHHHHHHHH
Confidence 566777788999999999999999998765433344444444444 7888999999999999998763 4566665666
Q ss_pred HHhhhhhchhhHHHHHHHHHHHHHHhhcChhh-------------------HHhhHHHHHHHhhcCcCccc--hhhHHhh
Q 007918 90 PLETLCTVEETCVRDKAVESLCRIGSQMRESD-------------------LVDWYIPLVKRLAAGEWFTA--RVSACGL 148 (585)
Q Consensus 90 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~-------------------~~~~l~~~l~~l~~~~~~~~--r~~a~~~ 148 (585)
.+..-+.|+--.||+.+++.+..+|...+.=. +.+.+...+.++.-.+.+.+ ..+-+..
T Consensus 896 ~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~k 975 (1692)
T KOG1020|consen 896 QIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARK 975 (1692)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHh
Confidence 66666779999999999999999998776411 22222223333322221110 0000000
Q ss_pred hHhh----------cCCCChH------------------------HHHHHHHHHHhhc------------CCCchHHHHH
Q 007918 149 FHIA----------YPSAPDI------------------------LKTELRSIYTQLC------------QDDMPMVRRS 182 (585)
Q Consensus 149 l~~~----------~~~~~~~------------------------~~~~l~~~l~~l~------------~d~~~~vr~~ 182 (585)
+... ...+-++ ..+..+.++.+.+ .+++.++|..
T Consensus 976 I~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~ 1055 (1692)
T KOG1020|consen 976 ISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLL 1055 (1692)
T ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHH
Confidence 0000 0000000 0011111111111 1222333332
Q ss_pred H-HHhHHHHHhhhccc----chHHHHHHHHHHhccC---hhHHHHHHHHHHHHhhccCc--hhhhhhhHHHHHHhccCCC
Q 007918 183 A-ASNLGKFAATVEPA----HLKTDIMSIFEDLTQD---DSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKS 252 (585)
Q Consensus 183 a-~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~d---~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~ 252 (585)
+ ...|..|+..- +. .+...+.|.+..-++. ..+-...+..+..+.+.... +.+...+-..+.+.+-..+
T Consensus 1056 ~~lstL~~Fskir-P~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g 1134 (1692)
T KOG1020|consen 1056 AYLSTLFVFSKIR-PQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMG 1134 (1692)
T ss_pred HHHHHHHHHHhcC-chhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcc
Confidence 2 23333333322 21 2233344544443333 22555666666666665543 4455555555555555555
Q ss_pred hHHHHHHHHHHHHHHHHhCCccc-ccchHHHHHHhcc-------CC----hHHHHHHHHHHHHHHHHhhC--------H-
Q 007918 253 WRVRYMVANQLYELCEAVGPEPT-RMDLVPAYVRLLR-------DN----EAEVRIAAAGKVTKFCRILN--------P- 311 (585)
Q Consensus 253 ~~vR~~~~~~l~~l~~~~~~~~~-~~~l~~~l~~ll~-------d~----~~~vr~~a~~~l~~l~~~~~--------~- 311 (585)
...-..+..|++.++....+... ....+..+...++ ++ ....-...+..+|.+++.+. +
T Consensus 1135 ~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~ 1214 (1692)
T KOG1020|consen 1135 MATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKT 1214 (1692)
T ss_pred hHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCcc
Confidence 55556677788888775433221 1233333333331 22 11233455667777877542 1
Q ss_pred -----HHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHH--HHHHHHHhHHhh
Q 007918 312 -----ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDV--RLNIISKLDQVN 384 (585)
Q Consensus 312 -----~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v--r~~a~~~l~~l~ 384 (585)
+...+.++..+.-+.++.+..+|..|+..+|.++-..+.-.+.+.+...+...+.|.+.++ +..+.+++..+.
T Consensus 1215 ~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL 1294 (1692)
T KOG1020|consen 1215 FLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYL 1294 (1692)
T ss_pred chhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 1334566777777788888999999999999998776655566777777777777665433 334444443332
Q ss_pred hh----h--------------------------chh----HHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhh
Q 007918 385 QV----I--------------------------GID----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 430 (585)
Q Consensus 385 ~~----~--------------------------~~~----~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~ 430 (585)
.. + |.. .+.+..++.+.+.+-+.+-++|..++..+..+.+..=..
T Consensus 1295 ~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVh- 1373 (1692)
T KOG1020|consen 1295 LEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVH- 1373 (1692)
T ss_pred HHHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCC-
Confidence 10 0 111 234566777777788899999999999998776542111
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHH------h---hhHHHHHhhhcCcchHHH---HHHHHHHH
Q 007918 431 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM------Q---HITPQVLEMINNPHYLYR---MTILRAIS 498 (585)
Q Consensus 431 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~------~---~ll~~l~~~l~~~~~~~R---~~a~~~l~ 498 (585)
.-.-+|.++.+-.|+....|..|-..+..+-+.+..-.+. + .+-..+-....++....| ..+-....
T Consensus 1374 -P~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~kY~gfv~sk~~~G~~lsf~lq~~~~~~~~~~~~~fr~~d~ss~tl~s 1452 (1692)
T KOG1020|consen 1374 -PVHCVPTLIALETDPSQAIRHVADELLKEIDEKYEGFVFSKLSQGVQLSFKLQQHIDEKTYKPVRGFRLPDHSSSTLKS 1452 (1692)
T ss_pred -ccchhhhheeecCChHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhcccccccCcccchhHHHh
Confidence 1235889999999999999999999999887654331110 0 011111111122333333 11111112
Q ss_pred Hhhhh-cChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 007918 499 LLAPV-MGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 540 (585)
Q Consensus 499 ~l~~~-~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~ 540 (585)
.+.+. -|.......+++.+.++..+++..+-.....+...++
T Consensus 1453 ~ly~~~r~nk~~rr~fl~si~~lfd~~~ks~vs~~~yiadnLA 1495 (1692)
T KOG1020|consen 1453 NLYKSIRGNKQIRRSFLQSILDLFDDPNKSVVSFLLYIADNLA 1495 (1692)
T ss_pred ccHHHHhhhHHHHHHHHHHHHHhccCCCcchhhhHHHHHhhhc
Confidence 22221 1333456788999999999876665555555544443
No 53
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=4e-08 Score=96.91 Aligned_cols=403 Identities=13% Similarity=0.133 Sum_probs=254.8
Q ss_pred CCChHHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC--hhHHHHHHHHHHHHhhccC
Q 007918 155 SAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLE 232 (585)
Q Consensus 155 ~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~ 232 (585)
...+.......+.+.+-+.|++|.+|..|...++.+- -+.+..++..-+....+| +.+|..++-+..++...-+
T Consensus 78 ~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~----v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~ 153 (734)
T KOG1061|consen 78 KGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLR----VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP 153 (734)
T ss_pred ccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEe----ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh
Confidence 3334455667788888999999999999988776542 344556666666666666 6699988888888766544
Q ss_pred chhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCccc---ccchHHHHHHhccCChHHHHHHHHHHHHHHHHhh
Q 007918 233 PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT---RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 309 (585)
Q Consensus 233 ~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~ 309 (585)
.-....-+.+.+..+..|+++.|-..|..++..+.+.-..... ...++..++..+.+.+.--+.. .|..+....
T Consensus 154 ~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~---IL~~l~~y~ 230 (734)
T KOG1061|consen 154 DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIF---ILDCLAEYV 230 (734)
T ss_pred hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHH---HHHHHHhcC
Confidence 4444556788888999999999999999999998876543211 1234444444444433333333 333333333
Q ss_pred CHHH-HHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCH--HHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhh
Q 007918 310 NPEL-AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 386 (585)
Q Consensus 310 ~~~~-~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 386 (585)
+++. -...+...+...+.+.+..|--.+.+.+-.....+.. +.+...+-|.+..++... +++...++..+..+...
T Consensus 231 p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~-~e~qyvaLrNi~lil~~ 309 (734)
T KOG1061|consen 231 PKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSE-SEIQYVALRNINLILQK 309 (734)
T ss_pred CCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeeccc-chhhHHHHhhHHHHHHh
Confidence 3321 1234555555666667776666666666666555443 223344444444444443 36666666666655543
Q ss_pred hch--------------------------------hHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHH
Q 007918 387 IGI--------------------------------DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK 434 (585)
Q Consensus 387 ~~~--------------------------------~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~ 434 (585)
.+. +.....++..+.....+.+...-..++.+++.++-..... ..
T Consensus 310 ~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---~~ 386 (734)
T KOG1061|consen 310 RPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---ND 386 (734)
T ss_pred ChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hh
Confidence 221 0011224445555555666666667777777776554432 45
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcC-cchHHHHHHHHHHHHhhhhcChHHHHhcH
Q 007918 435 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGSEITCSRL 513 (585)
Q Consensus 435 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~-~~~~~R~~a~~~l~~l~~~~~~~~~~~~i 513 (585)
.++.++.+++-....|...++..+..+...++..+ +.+++.+-..+.+ .++..|.+.++.++.-+..++.. .++
T Consensus 387 cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~--~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a---~el 461 (734)
T KOG1061|consen 387 CVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY--ESVVAILCENLDSLQEPEAKAALIWILGEYAERIENA---LEL 461 (734)
T ss_pred hHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch--hhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcH---HHH
Confidence 67777777776666666667777777776655432 4455555444332 35678999999999999888765 788
Q ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCC-CccHHHHHHHH
Q 007918 514 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDP-DVDVRFFATQA 574 (585)
Q Consensus 514 ~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~D~-~~~Vr~~a~~a 574 (585)
+..+++...|+...|+...+-+...++...+. ...+-+...|.....|. ++++|..+.-=
T Consensus 462 L~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~-~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y 522 (734)
T KOG1061|consen 462 LESFLENFKDETAEVQLELLTAAIKLFLKKPT-ETQELLQGVLPLATADTDNPDLRDRGLIY 522 (734)
T ss_pred HHHHHhhcccchHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHhhhhccccChhhhhhHHHH
Confidence 88899999999999999998888887766554 33344555555555444 56888877543
No 54
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.24 E-value=4.5e-09 Score=92.83 Aligned_cols=338 Identities=12% Similarity=0.110 Sum_probs=218.0
Q ss_pred hhHHHHHHhc-cCCChHHHHHHHHHHHHHHHHhCCc---ccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhC--HH
Q 007918 239 HILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PE 312 (585)
Q Consensus 239 ~~~~~l~~~~-~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~--~~ 312 (585)
-+.|.+.+++ +....-....++..+..++...... .....-+|.|++++.+.+.+||..++++|+.++-... .+
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD 193 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRD 193 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHH
Confidence 3556666666 3334445678888999888765432 1234679999999999999999999999998864321 11
Q ss_pred -HHHHhhHHHHHHhccCCc--HHHHHHHHHHHHhhchhhC---HHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhh
Q 007918 313 -LAIQHILPCVKELSSDSS--QHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 386 (585)
Q Consensus 313 -~~~~~i~~~l~~~~~d~~--~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 386 (585)
......+..+..++.+.- -..-+.+...+.+++..-. ....+...+|.+.+++...+++|-.-|+++++-+...
T Consensus 194 ~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg 273 (526)
T COG5064 194 YVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDG 273 (526)
T ss_pred HHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC
Confidence 111123333444443332 3556677788888876543 2446778899999999999999999999999988753
Q ss_pred hchh---HHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChh---hHHHHHHHHHHHHccCCchHHHHHHHHHHHH
Q 007918 387 IGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKR 460 (585)
Q Consensus 387 ~~~~---~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 460 (585)
..+. .+...+.+.+.+++.+++..+..-++..++.+...-..+ .+..-.++.+..+++++..++|..|+.++..
T Consensus 274 ~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSN 353 (526)
T COG5064 274 PNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISN 353 (526)
T ss_pred cHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecc
Confidence 2211 111245677888999988888777777777765422110 1122346777778899999999999999998
Q ss_pred HHHHhCHH---HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcC--hHH----HHhcHHHHHHhhcCCCCchHHHH
Q 007918 461 LAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG--SEI----TCSRLLPVVINASKDRVPNIKFN 531 (585)
Q Consensus 461 l~~~~~~~---~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~--~~~----~~~~i~~~l~~~l~d~~~~vR~~ 531 (585)
+....... .....++|.++.+++.-++.+|..|++++.+.....- ++. ....++..|.+++.-.+-.+-..
T Consensus 354 ITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev 433 (526)
T COG5064 354 ITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEV 433 (526)
T ss_pred cccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhh
Confidence 86532221 1346789999999999999999999999998875432 121 12344555555554333334445
Q ss_pred HHHHHHHHHhhh-------chH-----HHH--hhHHHHHHHhcCCCCccHHHHHHHHHH
Q 007918 532 VAKVLQSLIPIV-------DQS-----MVE--KTIRPCLVELTEDPDVDVRFFATQAIQ 576 (585)
Q Consensus 532 ~~~~l~~l~~~~-------~~~-----~~~--~~~~~~l~~l~~D~~~~Vr~~a~~al~ 576 (585)
++.++..+...- +.+ .+. .-.++.+..+....+..|-..|-..++
T Consensus 434 ~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe 492 (526)
T COG5064 434 ALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIE 492 (526)
T ss_pred hHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHH
Confidence 566666654331 111 111 235566777766666666555544443
No 55
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.23 E-value=6e-09 Score=100.07 Aligned_cols=278 Identities=23% Similarity=0.259 Sum_probs=195.3
Q ss_pred hhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhh
Q 007918 239 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 318 (585)
Q Consensus 239 ~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i 318 (585)
...+.+.+.+.|.++.+|..+...++.+. ....++.+...+.|.++.||..+..+++.+.. +..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~--------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a 106 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG--------SEEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEA 106 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc--------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhH
Confidence 35566777888889999999988877654 24678889999999999999999997777632 233
Q ss_pred HHHHHHhcc-CCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCC------------hHHHHHHHHHhHHhhh
Q 007918 319 LPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF------------PDVRLNIISKLDQVNQ 385 (585)
Q Consensus 319 ~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~------------~~vr~~a~~~l~~l~~ 385 (585)
.+.+..++. |+++.||..++.+++.+..... +..+...++|.. ..+|..++.+++.+..
T Consensus 107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a--------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~ 178 (335)
T COG1413 107 VPPLVELLENDENEGVRAAAARALGKLGDERA--------LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD 178 (335)
T ss_pred HHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh--------hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence 455555555 7999999999999988864321 222344444433 2678888888887664
Q ss_pred hhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHh
Q 007918 386 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF 465 (585)
Q Consensus 386 ~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 465 (585)
+...+.+...+.+....+|..+...++.+.... ..+.+.+...+.|+++.||..++..++.+..
T Consensus 179 --------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~-- 242 (335)
T COG1413 179 --------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD-- 242 (335)
T ss_pred --------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc--
Confidence 456677788888888899999999888775432 3466788888999999999999999887632
Q ss_pred CHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch
Q 007918 466 GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 545 (585)
Q Consensus 466 ~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~ 545 (585)
+...+.+...+.+.++.++..+..+.+.+- .....+.+...+.|....+|......++.+....
T Consensus 243 ------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~-- 306 (335)
T COG1413 243 ------EEAVDALAKALEDEDVILALLAAAALGALD--------LAEAALPLLLLLIDEANAVRLEAALALGQIGQEK-- 306 (335)
T ss_pred ------chhHHHHHHHHhccchHHHHHHHHHhcccC--------chhhHHHHHHHhhcchhhHHHHHHHHHHhhcccc--
Confidence 245666677777887777777766665111 1333456666777888888988888888875432
Q ss_pred HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007918 546 SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 578 (585)
Q Consensus 546 ~~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l 578 (585)
..........+.+..+|..+......+
T Consensus 307 ------~~~a~~~~~~~~~~~~~~~~~~~~~~~ 333 (335)
T COG1413 307 ------AVAALLLALEDGDADVRKAALILLEGI 333 (335)
T ss_pred ------hHHHHHHHhcCCchhhHHHHHHHHHhh
Confidence 233333445666777777776666544
No 56
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.3e-07 Score=93.27 Aligned_cols=415 Identities=13% Similarity=0.098 Sum_probs=212.9
Q ss_pred HHHHHHHhhcCc-CccchhhHHhhhHhhcCCCChHHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHH
Q 007918 126 YIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIM 204 (585)
Q Consensus 126 l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 204 (585)
++-++.+-.+.+ +.......+.+++.+..-++++..+.+.|.+..+++.+++.||+.|+.+..++.... +...+.+.
T Consensus 104 vllLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~--P~l~e~f~ 181 (866)
T KOG1062|consen 104 LLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV--PDLVEHFV 181 (866)
T ss_pred HHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC--chHHHHhh
Confidence 444444433332 444455556666777777788888999999999999999999999999999998875 34556666
Q ss_pred HHHHHhccC--hhHHHHHHHHHHHHhhccCc-----hhhhhhhHHHHHHhccC-----------CChHHHHHHHHHHHHH
Q 007918 205 SIFEDLTQD--DSVRLLAVEGCAALGKLLEP-----QDCVAHILPVIVNFSQD-----------KSWRVRYMVANQLYEL 266 (585)
Q Consensus 205 ~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~-----~~~~~~~~~~l~~~~~d-----------~~~~vR~~~~~~l~~l 266 (585)
+-..+++.+ ..|-..++..+..+++.-+. +...+.++.++.++... ++|-.....++.|.-+
T Consensus 182 ~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriL 261 (866)
T KOG1062|consen 182 IAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRIL 261 (866)
T ss_pred HHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHh
Confidence 666666665 33666666666666654332 11222233333333221 1333333333333333
Q ss_pred HHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhh----------------------CHHHHHHhhHHHHHH
Q 007918 267 CEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL----------------------NPELAIQHILPCVKE 324 (585)
Q Consensus 267 ~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~----------------------~~~~~~~~i~~~l~~ 324 (585)
+ ..+++........|++++... .........+..+-+
T Consensus 262 G---------------------q~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgk 320 (866)
T KOG1062|consen 262 G---------------------QNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGK 320 (866)
T ss_pred c---------------------CCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 2 222223333333333333221 111111222233333
Q ss_pred hccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHh
Q 007918 325 LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA 404 (585)
Q Consensus 325 ~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~ 404 (585)
++.+++..+|..+...+......-+ ...+.=-..+..+++|++..+|.-|++-.-.+...-.. ..++..+..++
T Consensus 321 FL~n~d~NirYvaLn~L~r~V~~d~--~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv----~~mv~eLl~fL 394 (866)
T KOG1062|consen 321 FLLNRDNNIRYVALNMLLRVVQQDP--TAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNV----RVMVKELLEFL 394 (866)
T ss_pred HhcCCccceeeeehhhHHhhhcCCc--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccH----HHHHHHHHHHH
Confidence 3333444444444444443332211 12233345567778888888888887776665543222 33455555566
Q ss_pred cCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHh-CHH--HHHhhhHHHHHhh
Q 007918 405 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF-GPE--WAMQHITPQVLEM 481 (585)
Q Consensus 405 ~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~--~~~~~ll~~l~~~ 481 (585)
...+...|......+..+++.+.++ ....+..+.+.+...-.-|+..+...+-.+...- ++. .....+...+...
T Consensus 395 ~~~d~~~k~~~as~I~~laEkfaP~--k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~ 472 (866)
T KOG1062|consen 395 ESSDEDFKADIASKIAELAEKFAPD--KRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSED 472 (866)
T ss_pred HhccHHHHHHHHHHHHHHHHhcCCc--chhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhh
Confidence 6566777777777777777666543 2223445555555444555555555555554432 221 0111111111111
Q ss_pred -h-cCcchHHHHHHHHHHHHhhhhcCh--------HHHHhcHHHHHHhhcCC--CCchHHHHHHHHHHHHHhhhchHHHH
Q 007918 482 -I-NNPHYLYRMTILRAISLLAPVMGS--------EITCSRLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQSMVE 549 (585)
Q Consensus 482 -l-~~~~~~~R~~a~~~l~~l~~~~~~--------~~~~~~i~~~l~~~l~d--~~~~vR~~~~~~l~~l~~~~~~~~~~ 549 (585)
+ .-++...-+.+.+++|.....+-. ......+...+.+.+.. .+..+|.-++.++..+...+... .
T Consensus 473 ~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~--~ 550 (866)
T KOG1062|consen 473 TLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS--S 550 (866)
T ss_pred hhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc--H
Confidence 1 112344567777777776632111 00122333333333321 13677777888887776655442 3
Q ss_pred hhHHHHHHHhcCCCCccHHHHHHH
Q 007918 550 KTIRPCLVELTEDPDVDVRFFATQ 573 (585)
Q Consensus 550 ~~~~~~l~~l~~D~~~~Vr~~a~~ 573 (585)
+.+...+..+...-+-+++..|.+
T Consensus 551 ~ri~~lI~~~~~s~~~elQQRa~E 574 (866)
T KOG1062|consen 551 ERIKQLISSYKSSLDTELQQRAVE 574 (866)
T ss_pred HHHHHHHHHhcccccHHHHHHHHH
Confidence 445555555555556666665554
No 57
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.1e-06 Score=85.83 Aligned_cols=286 Identities=13% Similarity=0.100 Sum_probs=162.2
Q ss_pred chHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChHHH
Q 007918 82 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK 161 (585)
Q Consensus 82 ~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~ 161 (585)
+....+..++..-+.+.+.. .+.-+|..+....+++ +...+-+=+..+....-+.+|+-|..++..++-..++..
T Consensus 105 dvlmL~tn~~rkdl~S~n~y---e~giAL~GLS~fvTpd-LARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl- 179 (877)
T KOG1059|consen 105 DVLMLTTNLLRKDLNSSNVY---EVGLALSGLSCIVTPD-LARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL- 179 (877)
T ss_pred cHHHHHHHHHHHHhccCccc---hhhheecccccccCch-hhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH-
Confidence 33444444555544432211 2233444444445554 333344445556667777888888888888776665543
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC---hhHHHHHHHHHHHHhhccCchhhhh
Q 007918 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD---DSVRLLAVEGCAALGKLLEPQDCVA 238 (585)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d---~~vr~~a~~~l~~l~~~~~~~~~~~ 238 (585)
.-.+|-+..-++|++|.|..+|...+..++...+.... .+-|.+-+++.+ ..+-...+..++++...-|+ ...
T Consensus 180 r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL--~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR--LgK 255 (877)
T KOG1059|consen 180 RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL--QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR--LGK 255 (877)
T ss_pred hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc--cccHHHHHHHhccCCCeehHHHHHHHhhccccCch--hhh
Confidence 44556666778899999999999999999887644321 244555555444 22555556666666654332 233
Q ss_pred hhHHHHHHhccCCChHHHHHHHHHHHHHHHH-----hCCcc-cccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHH
Q 007918 239 HILPVIVNFSQDKSWRVRYMVANQLYELCEA-----VGPEP-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE 312 (585)
Q Consensus 239 ~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~-----~~~~~-~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~ 312 (585)
.+++-+..+....+. .....+|+..+... .++.. ...--+.-+..++.|+|+..+.-++-+++.+++..+..
T Consensus 256 KLieplt~li~sT~A--mSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~ 333 (877)
T KOG1059|consen 256 KLIEPITELMESTVA--MSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA 333 (877)
T ss_pred hhhhHHHHHHHhhHH--HHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH
Confidence 455555555554331 12223333333222 11111 11122445556778999999999999999988764432
Q ss_pred HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhc-CCChHHHHHHHHHhHHhh
Q 007918 313 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVN 384 (585)
Q Consensus 313 ~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~ 384 (585)
...-...+.+++.|.++.+|..|+..+..+.. ++... .|+..++..+. .+....|...+..+-.++
T Consensus 334 --Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs---kkNl~-eIVk~LM~~~~~ae~t~yrdell~~II~iC 400 (877)
T KOG1059|consen 334 --VQAHKDLILRCLDDKDESIRLRALDLLYGMVS---KKNLM-EIVKTLMKHVEKAEGTNYRDELLTRIISIC 400 (877)
T ss_pred --HHHhHHHHHHHhccCCchhHHHHHHHHHHHhh---hhhHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 24445667788899999999999888877753 22222 33344443333 332355555554444444
No 58
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.22 E-value=3.8e-10 Score=99.44 Aligned_cols=262 Identities=12% Similarity=0.087 Sum_probs=183.4
Q ss_pred hhHHHHHHhc-cCCcHHHHHHHHHHHHhhchhhCHHH---HHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhc-hh-
Q 007918 317 HILPCVKELS-SDSSQHVRSALASVIMGMAPLLGKDA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-ID- 390 (585)
Q Consensus 317 ~i~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~- 390 (585)
-++|-+.+++ +......+-.|+.++.+++....... .....+|.+.++|.+++.+||..++++|+.++.... -.
T Consensus 114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD 193 (526)
T COG5064 114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRD 193 (526)
T ss_pred cccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHH
Confidence 3456666666 33445566788888888876544221 123467889999999999999999999999875432 11
Q ss_pred -HHhhhHHHHHHHHhcCCCh--HHHHHHHHHhHHHHHhhChh---hHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Q 007918 391 -LLSQSLLPAIVELAEDRHW--RVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 464 (585)
Q Consensus 391 -~~~~~ll~~l~~~~~~~~~--~~r~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 464 (585)
.+....+..+..++.+... .+-..+.+.++.+...-.+. ......+|.+.+++...+.+|-.-|+.++..+...
T Consensus 194 ~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg 273 (526)
T COG5064 194 YVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDG 273 (526)
T ss_pred HHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC
Confidence 1222344555555554433 33445567777776543322 22356789999999999999999999999988763
Q ss_pred hCHH---HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHH---HHhcHHHHHHhhcCCCCchHHHHHHHHHHH
Q 007918 465 FGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI---TCSRLLPVVINASKDRVPNIKFNVAKVLQS 538 (585)
Q Consensus 465 ~~~~---~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~ 538 (585)
-... .....+.+.+++++++++-.+..-++..++++....+... +.-.+++.+..+++++..++|..+|+++++
T Consensus 274 ~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSN 353 (526)
T COG5064 274 PNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISN 353 (526)
T ss_pred cHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecc
Confidence 2111 1224566779999999999999999999999987544321 234567888888999999999999999999
Q ss_pred HHhhhchH---HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007918 539 LIPIVDQS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 578 (585)
Q Consensus 539 l~~~~~~~---~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l 578 (585)
+-...... .+...+.|.|..+++..+-.+|-.|++|+...
T Consensus 354 ITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNa 396 (526)
T COG5064 354 ITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNA 396 (526)
T ss_pred cccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 84322111 34456889999998888999999999998653
No 59
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=3.7e-06 Score=85.45 Aligned_cols=209 Identities=12% Similarity=0.123 Sum_probs=127.7
Q ss_pred HHHHHHhHHhhhhhchhHHhhhHHHHHHHHhc--------CCChHHHHHHHHHhHHHHHhhChh-hH----HHHHHHHHH
Q 007918 374 LNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--------DRHWRVRLAIIEYIPLLASQLGVG-FF----DDKLGALCM 440 (585)
Q Consensus 374 ~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~--------~~~~~~r~~~~~~l~~l~~~~~~~-~~----~~~l~~~l~ 440 (585)
.+|...+..++..-|++.+ +.+++.+.+.++ ..+++-+.+|+..++.++..+... .+ ...+.+.+.
T Consensus 390 ~Aa~~~l~~~~~KR~ke~l-~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVf 468 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKRGKETL-PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVF 468 (1010)
T ss_pred HHHHHHHHHHHHhcchhhh-hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhh
Confidence 3456666777766666665 456666666554 356888899999999998766432 22 233566677
Q ss_pred HHccCCchHHHHHHHHHHHHHHH-HhCHHHHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhhhhcChH-H----HHhcH
Q 007918 441 QWLQDKVYSIRDAAANNLKRLAE-EFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSE-I----TCSRL 513 (585)
Q Consensus 441 ~~l~d~~~~vr~~a~~~l~~l~~-~~~~~~~~~~ll~~l~~~l~-~~~~~~R~~a~~~l~~l~~~~~~~-~----~~~~i 513 (585)
..++++.--.|..|+..++.++. .+.........+....+.+. |....||..|+.++..++...... . ..+.+
T Consensus 469 P~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~ 548 (1010)
T KOG1991|consen 469 PEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPI 548 (1010)
T ss_pred HhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHH
Confidence 78899999999999999999983 44444334455666666655 888999999999999998765532 1 24455
Q ss_pred HHHHHhhcCCCCchHHHHHHHHH-HHHHhhhch--HHHHhhHHHHHHHhcC------CCCccHHHHHHHHHHHHHHhhc
Q 007918 514 LPVVINASKDRVPNIKFNVAKVL-QSLIPIVDQ--SMVEKTIRPCLVELTE------DPDVDVRFFATQAIQSIDHVMM 583 (585)
Q Consensus 514 ~~~l~~~l~d~~~~vR~~~~~~l-~~l~~~~~~--~~~~~~~~~~l~~l~~------D~~~~Vr~~a~~al~~l~~~l~ 583 (585)
+..++.+.++-.-+.-.++++.+ +...+.+.+ ....+.+.....+++. +.+.+-...|...|.++..+|.
T Consensus 549 mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~ 627 (1010)
T KOG1991|consen 549 MQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILL 627 (1010)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 55666666554333222222222 222222222 1233444444444332 2234445566666666666654
No 60
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.22 E-value=3.3e-09 Score=101.88 Aligned_cols=250 Identities=24% Similarity=0.275 Sum_probs=188.7
Q ss_pred chHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhH
Q 007918 278 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL 357 (585)
Q Consensus 278 ~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 357 (585)
...+.+.+.+.|+++.+|..+...++.+.. ...+|.+..++.|.++.+|..++.+++.+.. +..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a 106 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEA 106 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhH
Confidence 457788889999999999999988776642 5567889999999999999999998888752 233
Q ss_pred HHHHHHhhc-CCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCC------------hHHHHHHHHHhHHHHH
Q 007918 358 LPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH------------WRVRLAIIEYIPLLAS 424 (585)
Q Consensus 358 ~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~------------~~~r~~~~~~l~~l~~ 424 (585)
.|.+...+. |.+..||..++.+|+.+... ..++.+...+.+.. |.+|..++..++.+.
T Consensus 107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~- 177 (335)
T COG1413 107 VPPLVELLENDENEGVRAAAARALGKLGDE--------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG- 177 (335)
T ss_pred HHHHHHHHHcCCcHhHHHHHHHHHHhcCch--------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC-
Confidence 455555555 79999999999999987653 22344444555433 467888877776552
Q ss_pred hhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhc
Q 007918 425 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM 504 (585)
Q Consensus 425 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~ 504 (585)
.+...+.+...+.|....||.+|..+++.+.... ..+.+.+...+.++++.+|..++..++.+..
T Consensus 178 -------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~-- 242 (335)
T COG1413 178 -------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD-- 242 (335)
T ss_pred -------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc--
Confidence 2335677888889999999999999999986532 3466778889999999999999999988765
Q ss_pred ChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 007918 505 GSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 581 (585)
Q Consensus 505 ~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~~ 581 (585)
....+.+...+.+.++.++.......+..- .......+...+.|..+.+|..+..++..+.+-
T Consensus 243 ------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 305 (335)
T COG1413 243 ------EEAVDALAKALEDEDVILALLAAAALGALD--------LAEAALPLLLLLIDEANAVRLEAALALGQIGQE 305 (335)
T ss_pred ------chhHHHHHHHHhccchHHHHHHHHHhcccC--------chhhHHHHHHHhhcchhhHHHHHHHHHHhhccc
Confidence 555677888888888888887777776221 123344555566788999999999888877653
No 61
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=99.22 E-value=4.2e-10 Score=109.39 Aligned_cols=253 Identities=18% Similarity=0.216 Sum_probs=206.5
Q ss_pred CCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCC
Q 007918 328 DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR 407 (585)
Q Consensus 328 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~ 407 (585)
-.+..-|..+...+....+.++.+.....++|.+...+.-.+ --...+.-+-.+.+.+..+.+...++|.+.++++..
T Consensus 265 lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~ 342 (690)
T KOG1243|consen 265 LKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSP 342 (690)
T ss_pred cCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhcCc
Confidence 345556677777777777777777777778888877665433 111222233333444444456678999999999999
Q ss_pred ChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcch
Q 007918 408 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHY 487 (585)
Q Consensus 408 ~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~ 487 (585)
+-.+|...+..+..+...+..+.+.+.+.|.+...+.|.+..+|+.++.++..++..++......+++..+.....|...
T Consensus 343 Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~ 422 (690)
T KOG1243|consen 343 DRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHG 422 (690)
T ss_pred chHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999886778889999888889999
Q ss_pred HHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccH
Q 007918 488 LYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDV 567 (585)
Q Consensus 488 ~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~D~~~~V 567 (585)
.+|....-|++.++....+......+.-.+.+.+.|+.+.-|.+....+......+..+....+++|.+.-+.-|++..|
T Consensus 423 ~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~v 502 (690)
T KOG1243|consen 423 GIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTV 502 (690)
T ss_pred cccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccch
Confidence 99999999999999987766433333445666789999999999999999999888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 007918 568 RFFATQAIQSIDHVM 582 (585)
Q Consensus 568 r~~a~~al~~l~~~l 582 (585)
|..|.+++..+..-+
T Consensus 503 r~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 503 RDTAEKAIRQFLEKL 517 (690)
T ss_pred hhHHHHHHHHHHhhh
Confidence 999999998876543
No 62
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=2.3e-08 Score=96.12 Aligned_cols=291 Identities=16% Similarity=0.142 Sum_probs=194.4
Q ss_pred hhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCH------
Q 007918 238 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP------ 311 (585)
Q Consensus 238 ~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~------ 311 (585)
+.+..-+..++.|.+++||..|++.+-.+.+.+. . +........+++.|.+..||.+|++.+..+++..+.
T Consensus 197 ~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k--L-~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 197 EHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFK--L-SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHhhccccc--c-cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 4455557889999999999999999988877432 2 345677778899999999999999999888876621
Q ss_pred --HHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCC-----hHHHHHHHHHhHHhh
Q 007918 312 --ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF-----PDVRLNIISKLDQVN 384 (585)
Q Consensus 312 --~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~-----~~vr~~a~~~l~~l~ 384 (585)
.......+..++....|.+|.||..+++++|.+.... .+.+...+.+.+.... ..=|-....+=+.+.
T Consensus 274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS-----ee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewS 348 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS-----EEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWS 348 (823)
T ss_pred hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH-----HHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcc
Confidence 1334566777888899999999999999999985332 1222333333322210 000111111111111
Q ss_pred h------hhchhH---HhhhHH-----HHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHH
Q 007918 385 Q------VIGIDL---LSQSLL-----PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 450 (585)
Q Consensus 385 ~------~~~~~~---~~~~ll-----~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v 450 (585)
. ..+.+. -...++ ..+..-++|+.+.||.+++..+..++..-+ .|...-+..+.++++|+...|
T Consensus 349 sGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP--~FA~~aldfLvDMfNDE~~~V 426 (823)
T KOG2259|consen 349 SGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSP--GFAVRALDFLVDMFNDEIEVV 426 (823)
T ss_pred cCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHhccHHHHH
Confidence 0 001110 011222 334556788999999999999999986533 345667899999999999999
Q ss_pred HHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHH
Q 007918 451 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKF 530 (585)
Q Consensus 451 r~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~ 530 (585)
|..|+.+|..+...+. ..+..++.+...+.|.+..+|++.-..++.. +....+ ..+..+..+++.+. .-|.=|.
T Consensus 427 RL~ai~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~~-~~~d~~-~i~m~v~~lL~~L~-kyPqDrd 500 (823)
T KOG2259|consen 427 RLKAIFALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKNA-RVSDLE-CIDMCVAHLLKNLG-KYPQDRD 500 (823)
T ss_pred HHHHHHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCcHH-HHHHHHHHHHHHhh-hCCCCcH
Confidence 9999999999988743 3467899999999999999999998888654 222222 23333444444333 1334466
Q ss_pred HHHHHHHHHHhhhc
Q 007918 531 NVAKVLQSLIPIVD 544 (585)
Q Consensus 531 ~~~~~l~~l~~~~~ 544 (585)
.+..+++.+.+..+
T Consensus 501 ~i~~cm~~iGqnH~ 514 (823)
T KOG2259|consen 501 EILRCMGRIGQNHR 514 (823)
T ss_pred HHHHHHHHHhccCh
Confidence 77888888876644
No 63
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=1.7e-06 Score=89.65 Aligned_cols=478 Identities=17% Similarity=0.123 Sum_probs=270.7
Q ss_pred hhhHHHHHHhhChhhhhhhccccccc---ccC-CchHHHHHHHHHHhccccccCCcchHHhchHHHhhhhhchhhHHHHH
Q 007918 30 IRRLSTIARALGEERTRKELIPFLSE---NND-DDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDK 105 (585)
Q Consensus 30 ~~~l~~~~~~~~~~~~~~~l~~~l~~---~~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~ 105 (585)
++.+..+-..+|+ +...++.|-|.. +.. ++...+..+-.++|..+..+| |+..-.++|+=. ..+.....|.=
T Consensus 371 lqi~s~~fek~G~-~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmG-Pe~vL~~lpLnl--~~~s~~~~RsW 446 (1176)
T KOG1248|consen 371 LQILSALFEKCGE-LSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMG-PERVLTILPLNL--HAESLSFTRSW 446 (1176)
T ss_pred HHHHHHHHHHhhh-hcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhC-HHHHHHHcchhc--cccccccchhH
Confidence 3444455555554 333345555543 111 122222233344444443333 555555555411 22222333322
Q ss_pred HHHHHHHHHhhcChhhHHhhHHHHHHHhh-------cCcCc--cchhhHHhhh---HhhcCCCCh--HHHHHHHHHHHhh
Q 007918 106 AVESLCRIGSQMRESDLVDWYIPLVKRLA-------AGEWF--TARVSACGLF---HIAYPSAPD--ILKTELRSIYTQL 171 (585)
Q Consensus 106 a~~~l~~l~~~~~~~~~~~~l~~~l~~l~-------~~~~~--~~r~~a~~~l---~~~~~~~~~--~~~~~l~~~l~~l 171 (585)
-.-.|..-+...+-..+.+++.|+...+. ..... ..+....+++ +..++...+ .....+.+.+...
T Consensus 447 LLPvLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~a 526 (1176)
T KOG1248|consen 447 LLPVLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAA 526 (1176)
T ss_pred hHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHH
Confidence 22333333333333445566666665443 11111 1222233333 333333322 2356677777776
Q ss_pred cCCCchHHHHHHHHhHHHHHhhhcc-----------cchHHHHHHHHHHhccC--------hhHHHHHHHHHH-HHhhcc
Q 007918 172 CQDDMPMVRRSAASNLGKFAATVEP-----------AHLKTDIMSIFEDLTQD--------DSVRLLAVEGCA-ALGKLL 231 (585)
Q Consensus 172 ~~d~~~~vr~~a~~~l~~l~~~~~~-----------~~~~~~l~~~l~~l~~d--------~~vr~~a~~~l~-~l~~~~ 231 (585)
+... ++.|..++.+|..++....+ ...-.-++|.+..+... ...|...++.+. ......
T Consensus 527 l~~~-~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t 605 (1176)
T KOG1248|consen 527 LLKR-PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVT 605 (1176)
T ss_pred Hhcc-hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcc
Confidence 6665 49999999999999887421 11222334444443322 224555555444 222222
Q ss_pred CchhhhhhhHHHHHHhccCCChHHHHH-HHHHHHHHH---HHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHH
Q 007918 232 EPQDCVAHILPVIVNFSQDKSWRVRYM-VANQLYELC---EAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR 307 (585)
Q Consensus 232 ~~~~~~~~~~~~l~~~~~d~~~~vR~~-~~~~l~~l~---~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~ 307 (585)
+ ......+...+.....+.+..++.. .+..|..++ ....... ...+..+.-..-+..+..++..+.+.|..++.
T Consensus 606 ~-~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~-vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~ 683 (1176)
T KOG1248|consen 606 P-TDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQ-VSKLFTVDPEFENSSSTKVQKKAYRLLEELSS 683 (1176)
T ss_pred c-HHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchh-HHHHHHhhHHhhccccHHHHHHHHHHHHHHhc
Confidence 2 2334445555666666654443332 222333222 2222111 12233222222233468899999999999887
Q ss_pred hhCHH----HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHH--HHHhHHHHHHHhhcCCChHHHHHHHHHhH
Q 007918 308 ILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLD 381 (585)
Q Consensus 308 ~~~~~----~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 381 (585)
.-..+ .....+...+..-+++.....|...+.++..+.+..+.+. +....+|-+.-.+++.+..-|..+...|-
T Consensus 684 ~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~ 763 (1176)
T KOG1248|consen 684 SPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLV 763 (1176)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHH
Confidence 62212 2235566666666777778889999999999988887443 23444454444458888999999999888
Q ss_pred Hhh--hh---hchhH---HhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhh---ChhhHHHHHHHHHHHHccCCchHH
Q 007918 382 QVN--QV---IGIDL---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GVGFFDDKLGALCMQWLQDKVYSI 450 (585)
Q Consensus 382 ~l~--~~---~~~~~---~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~v 450 (585)
.++ .. .|.+. ..+.+++.+...+-.+..+++...+-++..+.... ..+.+...++..+..++.....++
T Consensus 764 ~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI 843 (1176)
T KOG1248|consen 764 FIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREI 843 (1176)
T ss_pred HHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHH
Confidence 887 22 24322 33556666666544555555555455555555433 344455667888888899999999
Q ss_pred HHHHHHHHHHHHHHhCHHH---HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHH
Q 007918 451 RDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLP 515 (585)
Q Consensus 451 r~~a~~~l~~l~~~~~~~~---~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~ 515 (585)
+.+|+..+..++..++... +.+.++|.+..+..+.+..+|...-..+..++..+|.+.. +.++|
T Consensus 844 ~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eL-e~~~p 910 (1176)
T KOG1248|consen 844 AKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEEL-ESFLP 910 (1176)
T ss_pred HHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHH-HhhCH
Confidence 9999999999999888764 4577999999999999999999999999999999998743 44444
No 64
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.20 E-value=1.7e-06 Score=91.36 Aligned_cols=491 Identities=15% Similarity=0.121 Sum_probs=274.2
Q ss_pred chHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChHHHHHHHH
Q 007918 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRS 166 (585)
Q Consensus 87 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~ 166 (585)
.+..+...+..+...+|..|++||..+.+.-+.=-..+.+..-+..-+.|.+..||.+|..++|...-.- ++...+...
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~-~e~~~qyY~ 895 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI-PELIFQYYD 895 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc-HHHHHHHHH
Confidence 3444555667888999999999999998754432233445556666667888999999999998765433 334455666
Q ss_pred HHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC--hhHHHHHHHHHHHHhhc-cCch----hhhhh
Q 007918 167 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKL-LEPQ----DCVAH 239 (585)
Q Consensus 167 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~-~~~~----~~~~~ 239 (585)
.+..-..|....||+.+.+.+..++...+.=....++..-+..-.+| .++...+.+.+.++.=. .+.. .....
T Consensus 896 ~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~k 975 (1692)
T KOG1020|consen 896 QIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARK 975 (1692)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHh
Confidence 66777788999999999999999998765422333333333333445 44888888888776432 1111 11111
Q ss_pred hH---HHHH---HhccCCChHHHHHHHHHHHH--HHHHhCCcc--cccchHHHHHH------------hccCChHHHHH-
Q 007918 240 IL---PVIV---NFSQDKSWRVRYMVANQLYE--LCEAVGPEP--TRMDLVPAYVR------------LLRDNEAEVRI- 296 (585)
Q Consensus 240 ~~---~~l~---~~~~d~~~~vR~~~~~~l~~--l~~~~~~~~--~~~~l~~~l~~------------ll~d~~~~vr~- 296 (585)
+. .... .+..+..++.-...+..=.. ......+.. .....+..+.. ...+++.++|.
T Consensus 976 I~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~ 1055 (1692)
T KOG1020|consen 976 ISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLL 1055 (1692)
T ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHH
Confidence 11 1111 11122211111111100000 000000000 00011111111 11233345555
Q ss_pred HHHHHHHHHHHhhCHH---HHHHhhHHHHHHhccC-CcHHHHHHHHHHHHhhchhhC--HHHHHHhHHHHHHHhhcCCCh
Q 007918 297 AAAGKVTKFCRILNPE---LAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLG--KDATIEQLLPIFLSLLKDEFP 370 (585)
Q Consensus 297 ~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~ 370 (585)
+++..|..+++..+.- .+...+.|++..-++. ...++-...+..+..+.+.+. .+.+...+-..+.+.+-.-+.
T Consensus 1056 ~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~ 1135 (1692)
T KOG1020|consen 1056 AYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGM 1135 (1692)
T ss_pred HHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcch
Confidence 4455677776653321 2234566666544222 234555555666655554442 344555566666666555555
Q ss_pred HHHHHHHHHhHHhhhhhchh-HHhhhHHHHHHHHh-------cCC----ChHHHHHHHHHhHHHHHhhC--------hh-
Q 007918 371 DVRLNIISKLDQVNQVIGID-LLSQSLLPAIVELA-------EDR----HWRVRLAIIEYIPLLASQLG--------VG- 429 (585)
Q Consensus 371 ~vr~~a~~~l~~l~~~~~~~-~~~~~ll~~l~~~~-------~~~----~~~~r~~~~~~l~~l~~~~~--------~~- 429 (585)
..-..|+.+++.++...... .....+...+...+ .+. +...-...+.+++.++.++. +.
T Consensus 1136 a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~ 1215 (1692)
T KOG1020|consen 1136 ATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTF 1215 (1692)
T ss_pred HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccc
Confidence 55667778888887753221 11122222222211 111 22333445667777777542 21
Q ss_pred -----hHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHH--HHHHHHHHHHhhh
Q 007918 430 -----FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLY--RMTILRAISLLAP 502 (585)
Q Consensus 430 -----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~--R~~a~~~l~~l~~ 502 (585)
...+.++-++.-+..+.+.++|..|+..||.+|-.-..-+..+.+...+-+.+.+.+... +.-+++.+.....
T Consensus 1216 ~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~ 1295 (1692)
T KOG1020|consen 1216 LQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLL 1295 (1692)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 344556666777778888999999999999999764444344445554444454443221 2222222222211
Q ss_pred ------------------------------hcC----hHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHH
Q 007918 503 ------------------------------VMG----SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV 548 (585)
Q Consensus 503 ------------------------------~~~----~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~ 548 (585)
+.| .......+++.++..+-|.+..+|..+++.+..+...---..
T Consensus 1296 eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVhP- 1374 (1692)
T KOG1020|consen 1296 EEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVHP- 1374 (1692)
T ss_pred HHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCCc-
Confidence 011 112456778888888888999999999999988764311001
Q ss_pred HhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007918 549 EKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 549 ~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~ 580 (585)
...+|.|..+-.|+....|..|-..+..|.+
T Consensus 1375 -~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~ 1405 (1692)
T KOG1020|consen 1375 -VHCVPTLIALETDPSQAIRHVADELLKEIDE 1405 (1692)
T ss_pred -cchhhhheeecCChHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999999998887754
No 65
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.18 E-value=4.4e-06 Score=83.95 Aligned_cols=209 Identities=14% Similarity=0.112 Sum_probs=137.2
Q ss_pred CChHHHHHHHHHhHHhhhhhc--hhHHhhhHHHHHH-HHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHcc
Q 007918 368 EFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIV-ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ 444 (585)
Q Consensus 368 ~~~~vr~~a~~~l~~l~~~~~--~~~~~~~ll~~l~-~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 444 (585)
..|..-..+..+++.+..... +... +.++.... .+..|..+.+|..++..+....+.---..+.+.++..+..+..
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas 540 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLAS 540 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcc
Confidence 345555566666666655522 2222 22333222 3445677778888888776665322223345677888888889
Q ss_pred CCchHHHHHHHHHHHHHHHHhCHHH---HHhhhHHHHHhhhc--CcchHHHHHHHHHHHHhhh---hcChHHHHhcHHHH
Q 007918 445 DKVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMIN--NPHYLYRMTILRAISLLAP---VMGSEITCSRLLPV 516 (585)
Q Consensus 445 d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~ll~~l~~~l~--~~~~~~R~~a~~~l~~l~~---~~~~~~~~~~i~~~ 516 (585)
+...+|-....++|+.+++. .+++ ...++.|.....+. ..++.+-..+-.++..+.+ +.|+ ..+..+|.
T Consensus 541 ~~s~evl~llmE~Ls~vv~~-dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~--m~e~~iPs 617 (1005)
T KOG2274|consen 541 KSSDEVLVLLMEALSSVVKL-DPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGP--MQERLIPS 617 (1005)
T ss_pred cccHHHHHHHHHHHHHHhcc-ChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcc--hHHHHHHH
Confidence 99999999999999998875 3332 24678887776642 2234555556666665554 4555 67889999
Q ss_pred HHhhcCCCC----chHHHHHHHHHHHHHhhhchH---HHHhhHHHHHHHh-cCCCCccHHHHHHHHHHHHHH
Q 007918 517 VINASKDRV----PNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVEL-TEDPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 517 l~~~l~d~~----~~vR~~~~~~l~~l~~~~~~~---~~~~~~~~~l~~l-~~D~~~~Vr~~a~~al~~l~~ 580 (585)
+++.++-+. +..-..++..|..+....+++ .+..+.+|.+.++ +...|...-..+.+|+..+-.
T Consensus 618 lisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 618 LISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 999887665 556667777777777665543 5667788888884 566677788888888877643
No 66
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.18 E-value=9.2e-09 Score=98.52 Aligned_cols=207 Identities=14% Similarity=0.055 Sum_probs=94.4
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHH
Q 007918 319 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 398 (585)
Q Consensus 319 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~ 398 (585)
+..+...+.|.++.||..++++|+.+. .+...+.+..++++.++.||..++.+++.... .-.+
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~--------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~---------~~~~ 150 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG--------GRQAEPWLEPLLAASEPPGRAIGLAALGAHRH---------DPGP 150 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC--------chHHHHHHHHHhcCCChHHHHHHHHHHHhhcc---------ChHH
Confidence 344444555555555555555555443 12333444455555555555555544444211 1123
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHH
Q 007918 399 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 478 (585)
Q Consensus 399 ~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l 478 (585)
.+...++|+++.+|..++..++.+.. ....|.+...+.|.+..||.+|+..++.+ |.. ...+.+
T Consensus 151 ~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~~L~~al~d~~~~VR~aA~~al~~l----G~~----~A~~~l 214 (410)
T TIGR02270 151 ALEAALTHEDALVRAAALRALGELPR--------RLSESTLRLYLRDSDPEVRFAALEAGLLA----GSR----LAWGVC 214 (410)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhcc--------ccchHHHHHHHcCCCHHHHHHHHHHHHHc----CCH----hHHHHH
Confidence 34444555555555555555554421 11233344445566666666666555444 211 112233
Q ss_pred HhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHH
Q 007918 479 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVE 558 (585)
Q Consensus 479 ~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~ 558 (585)
......+....+..+...+... +. +..++.|..+++|+. +|..++.++|.+.. ....+.|..
T Consensus 215 ~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~ 276 (410)
T TIGR02270 215 RRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWLRELLQAAA--TRREALRAVGLVGD--------VEAAPWCLE 276 (410)
T ss_pred HHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHHHHHhcChh--hHHHHHHHHHHcCC--------cchHHHHHH
Confidence 3333333333333333333222 11 244455555555533 56666666665532 134444444
Q ss_pred hcCCCCccHHHHHHHHHHHH
Q 007918 559 LTEDPDVDVRFFATQAIQSI 578 (585)
Q Consensus 559 l~~D~~~~Vr~~a~~al~~l 578 (585)
.+.|+. ++..|..+++.|
T Consensus 277 ~l~d~~--~aR~A~eA~~~I 294 (410)
T TIGR02270 277 AMREPP--WARLAGEAFSLI 294 (410)
T ss_pred HhcCcH--HHHHHHHHHHHh
Confidence 444332 555555555554
No 67
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=4.1e-07 Score=88.68 Aligned_cols=234 Identities=13% Similarity=0.102 Sum_probs=159.7
Q ss_pred HHHHHhccccccCCcchHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHH
Q 007918 67 MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSAC 146 (585)
Q Consensus 67 ~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~ 146 (585)
+.-+|+.+... ..|+.+.-+.+-+..++++.-|.+|+.|+-.+-.++-..+. .+.. -.|.+.+-..|+++.+..+|.
T Consensus 126 ~giAL~GLS~f-vTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe-Alr~-~FprL~EkLeDpDp~V~SAAV 202 (877)
T KOG1059|consen 126 VGLALSGLSCI-VTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE-ALRP-CFPRLVEKLEDPDPSVVSAAV 202 (877)
T ss_pred hhheecccccc-cCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH-hHhh-hHHHHHHhccCCCchHHHHHH
Confidence 34445555553 34777777888888899999999999999999998877754 2333 345555666788999999999
Q ss_pred hhhHhhcCCCChHHHHHHHHHHHhhc-CCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccCh---hHHHHHHH
Q 007918 147 GLFHIAYPSAPDILKTELRSIYTQLC-QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD---SVRLLAVE 222 (585)
Q Consensus 147 ~~l~~~~~~~~~~~~~~l~~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~---~vr~~a~~ 222 (585)
+.|+.++..-+..+.. +-|.+.+++ ...+.++-....+.++++... ++.....++|-+..++++. ++-..++.
T Consensus 203 ~VICELArKnPknyL~-LAP~ffkllttSsNNWmLIKiiKLF~aLtpl--EPRLgKKLieplt~li~sT~AmSLlYECvN 279 (877)
T KOG1059|consen 203 SVICELARKNPQNYLQ-LAPLFYKLLVTSSNNWVLIKLLKLFAALTPL--EPRLGKKLIEPITELMESTVAMSLLYECVN 279 (877)
T ss_pred HHHHHHHhhCCccccc-ccHHHHHHHhccCCCeehHHHHHHHhhcccc--CchhhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 9999999887665433 344444443 334455555566666666543 2345566677677666662 23333333
Q ss_pred HHHHH--hhccCc-hhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHH
Q 007918 223 GCAAL--GKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA 299 (585)
Q Consensus 223 ~l~~l--~~~~~~-~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~ 299 (585)
++.+. ....+. ......+...+..++.|+++..|..++.+++.++...++.. ..-...+++++.|.|+.+|..|+
T Consensus 280 TVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~V--qa~kdlIlrcL~DkD~SIRlrAL 357 (877)
T KOG1059|consen 280 TVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAV--QAHKDLILRCLDDKDESIRLRAL 357 (877)
T ss_pred HheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHH--HHhHHHHHHHhccCCchhHHHHH
Confidence 32222 222322 34456677888889999999999999999999987644322 12345678899999999999999
Q ss_pred HHHHHHHHh
Q 007918 300 GKVTKFCRI 308 (585)
Q Consensus 300 ~~l~~l~~~ 308 (585)
..+..+...
T Consensus 358 dLl~gmVsk 366 (877)
T KOG1059|consen 358 DLLYGMVSK 366 (877)
T ss_pred HHHHHHhhh
Confidence 998877653
No 68
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.11 E-value=1.3e-08 Score=91.66 Aligned_cols=186 Identities=21% Similarity=0.250 Sum_probs=126.8
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHhhCHH----HH---HHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHH-
Q 007918 280 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LA---IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD- 351 (585)
Q Consensus 280 ~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~----~~---~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~- 351 (585)
.+.+...-.+.+|+.|..++..+..++..-.+. .+ ...+...+...+.|....|-..++..+..++...+..
T Consensus 9 ~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~ 88 (228)
T PF12348_consen 9 LAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHF 88 (228)
T ss_dssp -TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhH
Confidence 333433345667888888888887777654111 11 1233355556677777888889999999998888754
Q ss_pred -HHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhc-hhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhC--
Q 007918 352 -ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-- 427 (585)
Q Consensus 352 -~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~-- 427 (585)
.+.+.++|.+...+.+....+|..|..+|..++...+ .. ..+.+.+.....++++.+|..++.++..+....+
T Consensus 89 ~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~---~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~ 165 (228)
T PF12348_consen 89 EPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSP---KILLEILSQGLKSKNPQVREECAEWLAIILEKWGSD 165 (228)
T ss_dssp HHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccch
Confidence 3578899999999999999999999999999999877 22 2237777788999999999999999999988877
Q ss_pred hhh-----HHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHH
Q 007918 428 VGF-----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 468 (585)
Q Consensus 428 ~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 468 (585)
... ..+.+.+.+..++.|++.+||.+|-.++..+.+.+|..
T Consensus 166 ~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 166 SSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp -GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred HhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 111 23568899999999999999999999999998887764
No 69
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.09 E-value=3.3e-08 Score=94.76 Aligned_cols=239 Identities=14% Similarity=0.065 Sum_probs=157.3
Q ss_pred HHHHHHhc-cCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhH
Q 007918 241 LPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL 319 (585)
Q Consensus 241 ~~~l~~~~-~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~ 319 (585)
.+.+...+ .|++..++..++..+.... ....+..+...+.|.++.||..+.++|+.+.. +...
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~~~~--------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------~~a~ 119 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALLAQE--------DALDLRSVLAVLQAGPEGLCAGIQAALGWLGG--------RQAE 119 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHhccC--------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--------hHHH
Confidence 44444444 5666777776555543211 11236777788888888888888888886532 3345
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHH
Q 007918 320 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 399 (585)
Q Consensus 320 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~ 399 (585)
+.+..+++++++.||..++.+++.... .-.+.+...++|.++.||..|+.+++.+.. ....|.
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~r~~---------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~~ 182 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGAHRH---------DPGPALEAALTHEDALVRAAALRALGELPR--------RLSEST 182 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhcc---------ChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------ccchHH
Confidence 666777788888888888877766321 123456666778888888888888887664 345666
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHH
Q 007918 400 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL 479 (585)
Q Consensus 400 l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~ 479 (585)
+...+.|.+..||..++..+..+ |.. .-.+.+..+..++...++..+...++.. |.+ ..++.+.
T Consensus 183 L~~al~d~~~~VR~aA~~al~~l----G~~----~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~~----~a~~~L~ 246 (410)
T TIGR02270 183 LRLYLRDSDPEVRFAALEAGLLA----GSR----LAWGVCRRFQVLEGGPHRQRLLVLLAVA----GGP----DAQAWLR 246 (410)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHc----CCH----hHHHHHHHHHhccCccHHHHHHHHHHhC----Cch----hHHHHHH
Confidence 77778888888888888887554 321 1233444444555555555544444433 222 5677777
Q ss_pred hhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 007918 480 EMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 540 (585)
Q Consensus 480 ~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~ 540 (585)
.++.++. +|..++.+++.+.. ...++.++..+.|+. +|..+-.++..|.
T Consensus 247 ~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~~l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 247 ELLQAAA--TRREALRAVGLVGD--------VEAAPWCLEAMREPP--WARLAGEAFSLIT 295 (410)
T ss_pred HHhcChh--hHHHHHHHHHHcCC--------cchHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence 7777765 78888888887765 566778888887644 8888888887774
No 70
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=2.9e-06 Score=84.31 Aligned_cols=529 Identities=15% Similarity=0.119 Sum_probs=278.1
Q ss_pred cHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhcccccccccCCchHHHHHHHHHHhccccccCCc--ch----
Q 007918 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGV--EH---- 83 (585)
Q Consensus 10 ~i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~---- 83 (585)
++...+.+=-++|+..|..|-+.|.... +.....-.++..+..-+ -++++|.+++-...+..+.-..+ +.
T Consensus 6 ~l~~~l~qTl~pdps~rk~aEr~L~~~e---~q~~y~l~lL~Lv~~~~-~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i 81 (960)
T KOG1992|consen 6 TLANYLLQTLSPDPSVRKPAERALRSLE---GQQNYPLLLLNLVANGQ-QDPQIRVAAAVYFKNYIKRNWIPAEDSPIKI 81 (960)
T ss_pred HHHHHHHhcCCCCCccCchHHHHHHHhc---cCCCchHHHHHHHhccC-cChhHHHHHHHHHHHHHHhccCcCCCCcccc
Confidence 3444444444778999999998776542 22222223444443311 16788999888888776633221 11
Q ss_pred ----HHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChH
Q 007918 84 ----AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI 159 (585)
Q Consensus 84 ----~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~ 159 (585)
...+-..+-.+.-+....+..--.+++..+++.--| +.++.++|-+..-..+.+..+-.+.......++.+...+
T Consensus 82 ~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP-~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~e 160 (960)
T KOG1992|consen 82 IEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFP-DKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPE 160 (960)
T ss_pred chhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcc
Confidence 223444444455555566766667777776654434 356667776665555555555556666667788888753
Q ss_pred H-----HHHHH---H----HHHhhc---------CCCchHHHH-------HHHHhHHHHHhhhccc---chHHHHHHHHH
Q 007918 160 L-----KTELR---S----IYTQLC---------QDDMPMVRR-------SAASNLGKFAATVEPA---HLKTDIMSIFE 208 (585)
Q Consensus 160 ~-----~~~l~---~----~l~~l~---------~d~~~~vr~-------~a~~~l~~l~~~~~~~---~~~~~l~~~l~ 208 (585)
. +.++. . .+..++ ++++...-+ ..++.+..+...--++ +..+...+.+.
T Consensus 161 frSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~ 240 (960)
T KOG1992|consen 161 FRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFH 240 (960)
T ss_pred cccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHH
Confidence 1 22222 1 111111 111111111 1111111111110012 22333344444
Q ss_pred Hhcc--------C-------hhHHHHHHHHHHHHhhccCch--hhhhhhHHHHHHhccCCChH-----HHHHHHHHHHHH
Q 007918 209 DLTQ--------D-------DSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWR-----VRYMVANQLYEL 266 (585)
Q Consensus 209 ~l~~--------d-------~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~-----vR~~~~~~l~~l 266 (585)
+++. | +.+|...++.+.-.++.++++ .+.+.++.....++.+.++. ....|++.|..+
T Consensus 241 k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V 320 (960)
T KOG1992|consen 241 KLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSV 320 (960)
T ss_pred HHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 4433 1 347777788777777766552 33444444444444443322 333455666655
Q ss_pred HHHhC------Cc-----------------------ccccchHHHHHHhccCChHHH-HHHHHHHHHHHHHhhCHHHHHH
Q 007918 267 CEAVG------PE-----------------------PTRMDLVPAYVRLLRDNEAEV-RIAAAGKVTKFCRILNPELAIQ 316 (585)
Q Consensus 267 ~~~~~------~~-----------------------~~~~~l~~~l~~ll~d~~~~v-r~~a~~~l~~l~~~~~~~~~~~ 316 (585)
++.-. .+ .....-+.++.+.++-.|.+. |++|+..+..+++.+... ...
T Consensus 321 ~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~-vt~ 399 (960)
T KOG1992|consen 321 SRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQ-VTG 399 (960)
T ss_pred HhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcch-hHH
Confidence 54311 00 001123444455555455443 667888899999887432 222
Q ss_pred hhHHHHHH----hcc--CCcHHHHHHHHHHHHhhchhhC---------------HHHHHHhHHHHHHHhhcCCChHHHHH
Q 007918 317 HILPCVKE----LSS--DSSQHVRSALASVIMGMAPLLG---------------KDATIEQLLPIFLSLLKDEFPDVRLN 375 (585)
Q Consensus 317 ~i~~~l~~----~~~--d~~~~vr~~a~~~l~~l~~~~~---------------~~~~~~~l~~~l~~~l~d~~~~vr~~ 375 (585)
-+...+.. ..+ +.+|+-+..++..+..++...+ .+.+...+.|.+.+-=..+.|-++..
T Consensus 400 v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~ 479 (960)
T KOG1992|consen 400 VFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKAD 479 (960)
T ss_pred HHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhc
Confidence 22233333 333 4579988889888888764321 12334555565544333455777877
Q ss_pred HHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhh--------ChhhHHHHHHHHHHHHc---c
Q 007918 376 IISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL--------GVGFFDDKLGALCMQWL---Q 444 (585)
Q Consensus 376 a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~--------~~~~~~~~l~~~l~~~l---~ 444 (585)
+++-+-.+-..+|++... .++|.+...++.+..-+..-++.++..+.... |.+...+.+.+.+.++. +
T Consensus 480 aIKy~~~FR~ql~~~~lm-~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s 558 (960)
T KOG1992|consen 480 AIKYIYTFRNQLGKEHLM-ALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALS 558 (960)
T ss_pred ccceeeeecccCChHHHH-HHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhcc
Confidence 777777777778887764 58899999999988888888888888776433 23333333344444433 2
Q ss_pred CCchHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHH----hhhcCc-chHHHHHHHHHHHHhhhhcCh------HHHHh
Q 007918 445 DKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVL----EMINNP-HYLYRMTILRAISLLAPVMGS------EITCS 511 (585)
Q Consensus 445 d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~ll~~l~----~~l~~~-~~~~R~~a~~~l~~l~~~~~~------~~~~~ 511 (585)
-+...--+...+++-++........ +.+.++..+. ...++| ++.--....+.++.+....+. ..+.+
T Consensus 559 ~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~ 638 (960)
T KOG1992|consen 559 LPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEE 638 (960)
T ss_pred CCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHH
Confidence 2222222233333333333222211 1233333333 334454 344455556666666543221 12457
Q ss_pred cHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch
Q 007918 512 RLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 545 (585)
Q Consensus 512 ~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~ 545 (585)
.++|.+...+..+..+.---+...++.+++...+
T Consensus 639 aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~ 672 (960)
T KOG1992|consen 639 ALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSG 672 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7788777777665555555667777777665443
No 71
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=99.04 E-value=6.5e-09 Score=101.36 Aligned_cols=256 Identities=13% Similarity=0.200 Sum_probs=205.5
Q ss_pred ccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhc
Q 007918 287 LRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK 366 (585)
Q Consensus 287 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 366 (585)
+.-.+.+-|..-...|....+.++.+.....+.|.+...+.-.+ --..+...+-.+...+..+.+...+.|.+.+++.
T Consensus 263 l~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~ 340 (690)
T KOG1243|consen 263 LRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFK 340 (690)
T ss_pred cccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhc
Confidence 34445667777777888777777777777788888876654333 1112222233344444445577889999999999
Q ss_pred CCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCC
Q 007918 367 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK 446 (585)
Q Consensus 367 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 446 (585)
..+..+|...++.+..+...+..+.+.+.++|.+...+.|.+..+|..++..+..++..++......+++..+-+.-.|.
T Consensus 341 ~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~ 420 (690)
T KOG1243|consen 341 SPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDE 420 (690)
T ss_pred CcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccc
Confidence 99999999999999999999999888889999999999999999999999999999999988877888899888888899
Q ss_pred chHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCc
Q 007918 447 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVP 526 (585)
Q Consensus 447 ~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~ 526 (585)
...+|....-+++.+...+.+......+.......+.|+-..-|.+++..+....+.+.......+++|.+..+..|++.
T Consensus 421 ~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~ 500 (690)
T KOG1243|consen 421 HGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEK 500 (690)
T ss_pred cCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCccc
Confidence 99999999999999988776654333333344456888888899999999999999999888999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhc
Q 007918 527 NIKFNVAKVLQSLIPIVD 544 (585)
Q Consensus 527 ~vR~~~~~~l~~l~~~~~ 544 (585)
.||..+..++........
T Consensus 501 ~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 501 TVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred chhhHHHHHHHHHHhhhh
Confidence 999999999888766543
No 72
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=4.7e-06 Score=82.50 Aligned_cols=457 Identities=12% Similarity=0.092 Sum_probs=252.5
Q ss_pred ccCCchHHHHHHHHHHhccccccCCcchHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhc
Q 007918 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA 135 (585)
Q Consensus 56 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~ 135 (585)
.+..++..|+.+=..++.+... . +-.-.....+.+-.+..++.+|-.|+++|..+...-.-.. +-.++++..-
T Consensus 73 fQskd~~LRr~vYl~Ikels~i-s--edviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~----iery~kqaiv 145 (865)
T KOG1078|consen 73 FQSKDVSLRRMVYLAIKELSKI-S--EDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQA----IERYMKQAIV 145 (865)
T ss_pred HhhcCHHHHHHHHHHHhhcccc-c--hhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHH----HHHHHHhHee
Confidence 4566677776655555555331 1 1122234445555566788899999888888765332222 3333444455
Q ss_pred CcCccchhhHHhhhHhhcCCCChHHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHH-hccCh
Q 007918 136 GEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFED-LTQDD 214 (585)
Q Consensus 136 ~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-l~~d~ 214 (585)
|+++.++.++...=-.+.. ..+...+...........+.+..++-.+...|.++-+.. ......+...+.+ ...++
T Consensus 146 d~~~avSsaalvss~hll~-~~~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk~d--rla~sklv~~~~~~~~~~~ 222 (865)
T KOG1078|consen 146 DKNPAVSSAALVSSYHLLP-ISFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRKND--RLAVSKLVQKFTRGSLKSP 222 (865)
T ss_pred ccccccchHHHHHHhhhhc-ccHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHccccccch
Confidence 6666555443322111221 223334444445555555555666666666666554421 1111122221111 11111
Q ss_pred hHHHHHHHHHHHHhhccCchhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHH
Q 007918 215 SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEV 294 (585)
Q Consensus 215 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~v 294 (585)
--+..-+.........- ......+.+++..++.++...|-..++..+..+....+.+..+ -+..+..++..+...+
T Consensus 223 ~A~~~lir~~~~~l~~~--~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p--avs~Lq~flssp~~~l 298 (865)
T KOG1078|consen 223 LAVCMLIRIASELLKEN--QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP--AVSVLQLFLSSPKVAL 298 (865)
T ss_pred hHHHHHHHHHHHHhhhc--ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch--HHHHHHHHhcCcHHHH
Confidence 11111111111111111 2224567888888999988888888888887776655554443 4566667788888999
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHH
Q 007918 295 RIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRL 374 (585)
Q Consensus 295 r~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~ 374 (585)
|.+|.+.|..++-..+... ...-.-+..+.+|.|-.+-.-++.. +.+. |.+...+.++..+.....|-+.+-+.
T Consensus 299 RfaAvRtLnkvAm~~P~~v--~~cN~elE~lItd~NrsIat~AITt---LLKT-G~e~sv~rLm~qI~~fv~disDeFKi 372 (865)
T KOG1078|consen 299 RFAAVRTLNKVAMKHPQAV--TVCNLDLESLITDSNRSIATLAITT---LLKT-GTESSVDRLMKQISSFVSDISDEFKI 372 (865)
T ss_pred HHHHHHHHHHHHHhCCccc--cccchhHHhhhcccccchhHHHHHH---HHHh-cchhHHHHHHHHHHHHHHhccccceE
Confidence 9999999999987655432 1122334455666665544444333 3222 33445566666666655555444444
Q ss_pred HHHHHhHHhhhhhchhHHhhhHHHHHHHHhcC-CChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHH
Q 007918 375 NIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDA 453 (585)
Q Consensus 375 ~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~ 453 (585)
....++..++..++..+ ..+++.+..++.+ .....+...++++..+++..... +...+..+..++.|.... .-
T Consensus 373 vvvdai~sLc~~fp~k~--~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds--Ke~~L~~LCefIEDce~~--~i 446 (865)
T KOG1078|consen 373 VVVDAIRSLCLKFPRKH--TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS--KERGLEHLCEFIEDCEFT--QI 446 (865)
T ss_pred EeHHHHHHHHhhccHHH--HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcch--hhHHHHHHHHHHHhccch--HH
Confidence 55555555555555443 3566777776554 45777888888887777644321 222344444444554332 23
Q ss_pred HHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHH
Q 007918 454 AANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVA 533 (585)
Q Consensus 454 a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~ 533 (585)
+...|..+.+......-....+..+.+..-=.+..+|.+|+.++..++ .+.....+.+...+.+++.|.+..||..+.
T Consensus 447 ~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAt 524 (865)
T KOG1078|consen 447 AVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRAT 524 (865)
T ss_pred HHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHH
Confidence 344444443321111111334444555444467789999999999888 334445677888888999999999999988
Q ss_pred HHHHHHH
Q 007918 534 KVLQSLI 540 (585)
Q Consensus 534 ~~l~~l~ 540 (585)
..+..+-
T Consensus 525 f~l~~l~ 531 (865)
T KOG1078|consen 525 FYLKNLE 531 (865)
T ss_pred HHHHHhh
Confidence 8887775
No 73
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=99.02 E-value=1.8e-05 Score=80.33 Aligned_cols=458 Identities=14% Similarity=0.105 Sum_probs=239.4
Q ss_pred hcChhHHHHHHHhhhHH-HHHHhhChhhhhhhccccccc-ccCCchHHHHHHHHHHhccccccCCcchHHhchHHHhhhh
Q 007918 18 LKNDDIQLRLNSIRRLS-TIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLC 95 (585)
Q Consensus 18 l~~~~~~~R~~a~~~l~-~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~ 95 (585)
+.+.+...|..|++.+- .+. .|.+ ...+.|-+.. ....+.|+++.+=..+..+++. .|+..-.-.+.+++=+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~--~G~d--mssLf~dViK~~~trd~ElKrL~ylYl~~yak~--~P~~~lLavNti~kDl 101 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMS--LGED--MSSLFPDVIKNVATRDVELKRLLYLYLERYAKL--KPELALLAVNTIQKDL 101 (757)
T ss_pred ccccChHHHHHHHHHHHHHHh--cCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHhhc
Confidence 77888889999987553 333 3432 3345544444 4467889888777777777663 3455555677788888
Q ss_pred hchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChHHHHH-HHHHHHhhcCC
Q 007918 96 TVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE-LRSIYTQLCQD 174 (585)
Q Consensus 96 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~-l~~~l~~l~~d 174 (585)
.|+|+.+|-.|++.++.+ +...+...+++-+.+..+|+++.||..|+.++..+++.-.+-.... ....+..+..|
T Consensus 102 ~d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D 177 (757)
T COG5096 102 QDPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVAD 177 (757)
T ss_pred cCCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhC
Confidence 999999999999988775 5567888899999999999999999999999999987655555555 77788888999
Q ss_pred CchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhcc----Chh--HHHHHHHHHHHHhhccCchhhhhh-hHHHHHHh
Q 007918 175 DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ----DDS--VRLLAVEGCAALGKLLEPQDCVAH-ILPVIVNF 247 (585)
Q Consensus 175 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~----d~~--vr~~a~~~l~~l~~~~~~~~~~~~-~~~~l~~~ 247 (585)
.+|.|...|..++..+... ....+..+....+-+ ++. ....-...+..+....+....... +...+.-.
T Consensus 178 ~dP~Vi~nAl~sl~~i~~e----~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s~~~~~~~~~~~ 253 (757)
T COG5096 178 SDPIVIANALASLAEIDPE----LAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDSAEDFEERLSPP 253 (757)
T ss_pred CCchHHHHHHHHHHHhchh----hhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCcHHHHHHhccch
Confidence 9999999999888877654 122222222222111 111 133333334444444333211111 11112222
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhcc
Q 007918 248 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS 327 (585)
Q Consensus 248 ~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~ 327 (585)
.+..++.+-..++..+..+..............+.+..++.-+ +......+.....+.-...+..+ ...+..+..- .
T Consensus 254 ~~~~n~~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~~Ll~~~-~~~~~~vl~~~~~~~l~~~~k~~-~~~~~~f~~~-~ 330 (757)
T COG5096 254 LQHNNAEVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLLAKP-ESLIQYVLRRNIQIDLEVCSKLL-DKVKKLFLIE-Y 330 (757)
T ss_pred hhhCcHHHHHHHHHHHHHHhhhhccccHHHhhccHHHHHHcCC-HHHHHHHHHHhhHHHHHhhHHHH-HHHhhhhhhh-c
Confidence 3345556666666666666555544433333445555554443 33333333322222111111111 1111111000 0
Q ss_pred CCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcC--CChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhc
Q 007918 328 DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE 405 (585)
Q Consensus 328 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~ 405 (585)
+.+..+.-.-...+..++. ......+++-+.....+ .++++-..++++|+.+....... ....+..+..+++
T Consensus 331 ~~~i~~~lek~~~~t~l~~----~~n~~~~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~~s~--~~~~I~~~lel~~ 404 (757)
T COG5096 331 NDDIYIKLEKLDQLTRLAD----DQNLSQILLELIYYIAENHIDAEMVSEAIKALGDLASKAESS--VNDCISELLELLE 404 (757)
T ss_pred cchHHHHHHHHHHHhhcCC----chhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhhhhhhhh--HHHHHHHHHHhcc
Confidence 1111111122222212211 11122244444455555 56777788888888887655221 1344555555555
Q ss_pred ---CCCh-HHHHH----HHHHhH----HHHHhhChhhHHHHHHHHH---HHHcc--CCchHHHHHH-----HHHHHHHHH
Q 007918 406 ---DRHW-RVRLA----IIEYIP----LLASQLGVGFFDDKLGALC---MQWLQ--DKVYSIRDAA-----ANNLKRLAE 463 (585)
Q Consensus 406 ---~~~~-~~r~~----~~~~l~----~l~~~~~~~~~~~~l~~~l---~~~l~--d~~~~vr~~a-----~~~l~~l~~ 463 (585)
-..| -+... ++..+. .+-..-++ ..+.+.+.+ ...++ +..+.++.++ +..++.++.
T Consensus 405 g~~~~~~Yi~~e~~~~~~i~v~r~~~~~lr~l~~~--~~~~~~~~l~~~~e~l~~~~~~P~~k~~~~~~~~~wl~ge~~~ 482 (757)
T COG5096 405 GVWIRGSYIVQEVRIVDCISVIRISVLVLRILPNE--YPKILLRGLYALEETLELQSREPRAKSVTDKYLGAWLLGEFSD 482 (757)
T ss_pred chhhccchhhhhhcccceeeeeehhcchhhhcCCc--chhhhHHHHHHHHHHhhccccCcHHHHHHhhhhHHHhHHHHHH
Confidence 1111 11111 011111 11111122 111122222 22233 3356777777 666666665
Q ss_pred HhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhh
Q 007918 464 EFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP 502 (585)
Q Consensus 464 ~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~ 502 (585)
..... .+.++........+....++......-..+.-
T Consensus 483 ~i~r~--~~~~l~~~~~~~~~E~levq~~Il~~svkl~~ 519 (757)
T COG5096 483 IIPRL--EPELLRIAISNFVDETLEVQYTILMSSVKLIA 519 (757)
T ss_pred HHhhh--hHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 43321 23344444455556666666665555544443
No 74
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=5.8e-06 Score=81.84 Aligned_cols=466 Identities=14% Similarity=0.093 Sum_probs=263.8
Q ss_pred HHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChHHHHH
Q 007918 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE 163 (585)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~ 163 (585)
+..++-.+.++.+++|+..|+..--+++.+.....+-. .+..-+.+-.+...+..|..|...+..+...- ....
T Consensus 62 ate~ff~~tKlfQskd~~LRr~vYl~Ikels~isedvi---ivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~---m~~~ 135 (865)
T KOG1078|consen 62 ATELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDVI---IVTSSLMKDMTGKEDLYRAAAIRALCSIIDGT---MLQA 135 (865)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhhh---hhhHHHHhhccCCCcchhHHHHHHHHhhcCcc---hhHH
Confidence 33445557788899999999888777777654332211 12222333344456677777777777766543 3344
Q ss_pred HHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccChh--HHHHHHHHHHHHhhccCchhhhhhhH
Q 007918 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDS--VRLLAVEGCAALGKLLEPQDCVAHIL 241 (585)
Q Consensus 164 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~--vr~~a~~~l~~l~~~~~~~~~~~~~~ 241 (585)
+-.++.+..-|.++.++.++.-.=..++.. ...........+.....+++ ++..+...+..+-+.-. .....++
T Consensus 136 iery~kqaivd~~~avSsaalvss~hll~~--~~~~vkrw~neiqea~~s~~~m~QyHalglLyqirk~dr--la~sklv 211 (865)
T KOG1078|consen 136 IERYMKQAIVDKNPAVSSAALVSSYHLLPI--SFDVVKRWANEVQEAVNSDNIMVQYHALGLLYQIRKNDR--LAVSKLV 211 (865)
T ss_pred HHHHHHhHeeccccccchHHHHHHhhhhcc--cHHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhhhH--HHHHHHH
Confidence 445566677787777776554433333322 12222222222222223322 55666665555533110 0011111
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHHHHhCCc-ccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHH
Q 007918 242 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILP 320 (585)
Q Consensus 242 ~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~ 320 (585)
..+.. -.-.++--+ +..+...+..+..+ .....+++.+-.++..+...|-..++.++..+....+... ...+.
T Consensus 212 ~~~~~-~~~~~~~A~---~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l--~pavs 285 (865)
T KOG1078|consen 212 QKFTR-GSLKSPLAV---CMLIRIASELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSREL--APAVS 285 (865)
T ss_pred HHHcc-ccccchhHH---HHHHHHHHHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhc--chHHH
Confidence 11111 001111111 11111122222222 1123578888888888888899988888888766544432 22456
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHH
Q 007918 321 CVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI 400 (585)
Q Consensus 321 ~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l 400 (585)
.+..+++.+..-+|-++.+.|..++...+.... ..-+-+..++.|.+..+-.-|+.. +.+. |.+.-.+.++..+
T Consensus 286 ~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~--~cN~elE~lItd~NrsIat~AITt---LLKT-G~e~sv~rLm~qI 359 (865)
T KOG1078|consen 286 VLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT--VCNLDLESLITDSNRSIATLAITT---LLKT-GTESSVDRLMKQI 359 (865)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc--ccchhHHhhhcccccchhHHHHHH---HHHh-cchhHHHHHHHHH
Confidence 677788999999999999999999876653321 122345666777765554444443 3322 3333335566666
Q ss_pred HHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHcc-CCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHH
Q 007918 401 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL 479 (585)
Q Consensus 401 ~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~ 479 (585)
..+..|-+-..+..+++++..++..++.. ...+++.+.+++. +...+-+.+.++++-.++...... .+..+..+.
T Consensus 360 ~~fv~disDeFKivvvdai~sLc~~fp~k--~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds--Ke~~L~~LC 435 (865)
T KOG1078|consen 360 SSFVSDISDEFKIVVVDAIRSLCLKFPRK--HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS--KERGLEHLC 435 (865)
T ss_pred HHHHHhccccceEEeHHHHHHHHhhccHH--HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcch--hhHHHHHHH
Confidence 66665554445555566666655544432 2335566655553 556677777888887777644332 344455555
Q ss_pred hhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHh
Q 007918 480 EMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 559 (585)
Q Consensus 480 ~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l 559 (585)
..+.|..+ +.-+...+.-++...+....-......+.+..-=.+..||.++..++.++. .+.+...+.+.-.+.++
T Consensus 436 efIEDce~--~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc 511 (865)
T KOG1078|consen 436 EFIEDCEF--TQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRC 511 (865)
T ss_pred HHHHhccc--hHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHH
Confidence 55555433 344555555555433322111222233333333357889999999999997 44455567889999999
Q ss_pred cCCCCccHHHHHHHHHHHHH
Q 007918 560 TEDPDVDVRFFATQAIQSID 579 (585)
Q Consensus 560 ~~D~~~~Vr~~a~~al~~l~ 579 (585)
+.|+|.+||..|.-++..+.
T Consensus 512 ~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 512 LNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hcCchHHHHHHHHHHHHHhh
Confidence 99999999999999988776
No 75
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.93 E-value=1.3e-07 Score=96.94 Aligned_cols=189 Identities=20% Similarity=0.262 Sum_probs=156.2
Q ss_pred HHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhC---hhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCH
Q 007918 391 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 467 (585)
Q Consensus 391 ~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 467 (585)
.....+-+.+..-+.+++|..|..+++.+....+.-+ ...+...+...+-....|.+..|-..|+.++..++..++.
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~ 328 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP 328 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch
Confidence 3445666777788899999999999999888877655 1222333445555567899999999999999999999887
Q ss_pred HH--HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch
Q 007918 468 EW--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 545 (585)
Q Consensus 468 ~~--~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~ 545 (585)
.+ +...+.|.++..+.+....+|.+++.++..++...+ ...+.+.+...+++.+|.+|..+..++...+...++
T Consensus 329 ~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 329 LFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred hhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 64 457889999999999999999999999988887433 477889999999999999999999999999887763
Q ss_pred ----HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 007918 546 ----SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 583 (585)
Q Consensus 546 ----~~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~~l~ 583 (585)
......+.|.+....+|.+.+||..|.+++..+.++.+
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 24556788999999999999999999999999988754
No 76
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=2.7e-05 Score=76.80 Aligned_cols=338 Identities=11% Similarity=0.112 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHHhhccCchhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccc--cchHHHHHHhccCChHH
Q 007918 216 VRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR--MDLVPAYVRLLRDNEAE 293 (585)
Q Consensus 216 vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~ll~d~~~~ 293 (585)
+|...+..+.++ .+.+..+.++|.+..+++..+.-||+.|+-++..+-+.+.. ..+ +.++..++ ..+.|+.
T Consensus 115 iRG~TLRFLckL----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~-L~pDapeLi~~fL--~~e~Dps 187 (948)
T KOG1058|consen 115 IRGSTLRFLCKL----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH-LIPDAPELIESFL--LTEQDPS 187 (948)
T ss_pred hcchhhhhhhhc----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh-hcCChHHHHHHHH--HhccCch
Confidence 888777766654 44567888999999999999999999999999888765321 111 13333332 3456677
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHh---ccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCCh
Q 007918 294 VRIAAAGKVTKFCRILNPELAIQHILPCVKEL---SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFP 370 (585)
Q Consensus 294 vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~---~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~ 370 (585)
.++.|.-.|... .++ ..+.++... ..+-++..+...++.+...+..-+. -.......+..+|..+++
T Consensus 188 CkRNAFi~L~~~----D~E----rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~--~~~~~i~~i~~lL~stss 257 (948)
T KOG1058|consen 188 CKRNAFLMLFTT----DPE----RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPA--EKARYIRCIYNLLSSTSS 257 (948)
T ss_pred hHHHHHHHHHhc----CHH----HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHH--HhhHHHHHHHHHHhcCCc
Confidence 777766555443 222 122233222 2233456666677777666652221 123455677788888899
Q ss_pred HHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHh-cCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchH
Q 007918 371 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYS 449 (585)
Q Consensus 371 ~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~ 449 (585)
.|+..|+.++..+...- ..+ ..-...+.+++ +.++..++.-.+.-+..+.. +.+.....+.--++..+..++.+
T Consensus 258 aV~fEaa~tlv~lS~~p--~al-k~Aa~~~i~l~~kesdnnvklIvldrl~~l~~--~~~~il~~l~mDvLrvLss~dld 332 (948)
T KOG1058|consen 258 AVIFEAAGTLVTLSNDP--TAL-KAAASTYIDLLVKESDNNVKLIVLDRLSELKA--LHEKILQGLIMDVLRVLSSPDLD 332 (948)
T ss_pred hhhhhhcceEEEccCCH--HHH-HHHHHHHHHHHHhccCcchhhhhHHHHHHHhh--hhHHHHHHHHHHHHHHcCccccc
Confidence 99999888887766431 111 12233344433 34555666666666666652 22223344455566788999999
Q ss_pred HHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhh---hcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCc
Q 007918 450 IRDAAANNLKRLAEEFGPEWAMQHITPQVLEM---INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVP 526 (585)
Q Consensus 450 vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~---l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~ 526 (585)
||..++...-.+...-..+.....+-..+.+. -.+.+...|+..++++..++-.++. +...+.|.+++.+.|.++
T Consensus 333 vr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~ll~fisD~N~ 410 (948)
T KOG1058|consen 333 VRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLLLDFISDSNE 410 (948)
T ss_pred HHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHHHHHhccCCH
Confidence 99999988777765433222211111222221 2345677899999999999877765 668899999999999988
Q ss_pred hHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007918 527 NIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 527 ~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~ 580 (585)
.--..++..+...++.++.= .+...+++.+.++ +.+.+-..|.|.++.-+.
T Consensus 411 ~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~i---rS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 411 AAASDVLMFVREAIEKFPNLRASIIEKLLETFPQI---RSSKICRGALWILGEYCE 463 (948)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhhh---cccccchhHHHHHHHHHh
Confidence 87777777777777666531 2333444444443 334444556666555443
No 77
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=98.91 E-value=2e-07 Score=91.64 Aligned_cols=236 Identities=17% Similarity=0.279 Sum_probs=185.1
Q ss_pred CcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhc-CC
Q 007918 329 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DR 407 (585)
Q Consensus 329 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~-~~ 407 (585)
.++.-+..+.+.|..+...++.......++|.+...+.+.. ..-.....+-.+.+......+.+.++|.|...++ ..
T Consensus 285 kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~--~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~ 362 (700)
T KOG2137|consen 285 KDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTK--MVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASD 362 (700)
T ss_pred cCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhcccc--ccccccchhhhhhhccchhhhhhhhhHHHHHHhccCC
Confidence 55667888899999999999988888999999988885541 1112222333344444445566788999998887 56
Q ss_pred ChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhh-hcCcc
Q 007918 408 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM-INNPH 486 (585)
Q Consensus 408 ~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~-l~~~~ 486 (585)
+.+++...++.++.+.+....+.+.+.++|.+...++|.+..++..++..+..+.+.+...+..+.++|.+.++ +...+
T Consensus 363 ~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~ 442 (700)
T KOG2137|consen 363 PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTN 442 (700)
T ss_pred cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccc
Confidence 67788899999999999999999999999999999999999999999999999999999888889999999887 46668
Q ss_pred hHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch--HHHHhhHHHHHHHhcCCCC
Q 007918 487 YLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--SMVEKTIRPCLVELTEDPD 564 (585)
Q Consensus 487 ~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~--~~~~~~~~~~l~~l~~D~~ 564 (585)
..++.+++.|++.+++.++.....+.++|++.+. +..+|.+...+..+...+...... ....+.++|.+..+...+.
T Consensus 443 ~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~-~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 443 LYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCI-KTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 8999999999999998888766677777776664 445788888888888777544333 4566778888888765544
Q ss_pred ccH
Q 007918 565 VDV 567 (585)
Q Consensus 565 ~~V 567 (585)
-.+
T Consensus 522 L~~ 524 (700)
T KOG2137|consen 522 LNG 524 (700)
T ss_pred ccH
Confidence 443
No 78
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=8.8e-05 Score=72.82 Aligned_cols=281 Identities=13% Similarity=0.160 Sum_probs=171.0
Q ss_pred CchHHHHHHHHHHhccccccCCcchHHhchHHHhhhhh--chhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcC
Q 007918 59 DDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCT--VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG 136 (585)
Q Consensus 59 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~ 136 (585)
.++.....+..+++++ |+-+....+.+-+.+++. +..+.||+.|+-++-.+.+..++-.-.......+..+..|
T Consensus 123 rn~~fv~LAL~~I~ni----G~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D 198 (938)
T KOG1077|consen 123 RNPTFVCLALHCIANI----GSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDD 198 (938)
T ss_pred CCcHHHHHHHHHHHhh----ccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCc
Confidence 3444444444555554 455656666665666554 4568899999999999998865432233556666778888
Q ss_pred cCccchhhHHhhhHhhcCCCChHHHHHHHHHHHhhc----------------CCCchHHHHHHHHhHHHHHhhhcccchH
Q 007918 137 EWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLC----------------QDDMPMVRRSAASNLGKFAATVEPAHLK 200 (585)
Q Consensus 137 ~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~----------------~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 200 (585)
....+-.++..++..+..+.++.++.-+.+.+..+. .-+.|+....++..|..+ ....+....
T Consensus 199 ~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~-p~~~D~~~r 277 (938)
T KOG1077|consen 199 QHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY-PTPEDPSTR 277 (938)
T ss_pred cccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC-CCCCCchHH
Confidence 888888888899999988888765544443333322 124567766666666555 111122233
Q ss_pred HHHHHHHHHhccC-------h-----hHHHHHHHHHHHHhhccCc-hhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHH
Q 007918 201 TDIMSIFEDLTQD-------D-----SVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELC 267 (585)
Q Consensus 201 ~~l~~~l~~l~~d-------~-----~vr~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~ 267 (585)
..+...+..+++. . +...+.+....+++-.+.. .+........+-+++++....+|..+++.+..++
T Consensus 278 ~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ 357 (938)
T KOG1077|consen 278 ARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLA 357 (938)
T ss_pred HHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHH
Confidence 3444444443221 1 1222333333344444433 4455667777888899999999999999998888
Q ss_pred HHhCCcccccchHHHHHHhcc-CChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhch
Q 007918 268 EAVGPEPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP 346 (585)
Q Consensus 268 ~~~~~~~~~~~l~~~l~~ll~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~ 346 (585)
..-........-...++..++ +.|..+|+.++..|..++..-....+...++.+ +...+..+|+..+--+.-+++
T Consensus 358 ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqY----L~tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 358 SSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQY----LETADYSIREEIVLKVAILAE 433 (938)
T ss_pred hccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHH----HhhcchHHHHHHHHHHHHHHH
Confidence 652211111223566677777 889999999999999999875554444444444 344566666666555544544
Q ss_pred hh
Q 007918 347 LL 348 (585)
Q Consensus 347 ~~ 348 (585)
.+
T Consensus 434 Ky 435 (938)
T KOG1077|consen 434 KY 435 (938)
T ss_pred Hh
Confidence 43
No 79
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=3.3e-05 Score=76.09 Aligned_cols=157 Identities=16% Similarity=0.121 Sum_probs=105.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHH
Q 007918 397 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP 476 (585)
Q Consensus 397 l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~ 476 (585)
-|.+.+++.|+++..|...+..+..--...|.. ..+-.++--..+|.+..||.+|.-++|-++-. .+...|
T Consensus 521 d~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn---kair~lLh~aVsD~nDDVrRaAVialGFVl~~------dp~~~~ 591 (929)
T KOG2062|consen 521 DPLIKELLRDKDPILRYGGMYTLALAYVGTGNN---KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR------DPEQLP 591 (929)
T ss_pred HHHHHHHhcCCchhhhhhhHHHHHHHHhccCch---hhHHHhhcccccccchHHHHHHHHHheeeEec------Chhhch
Confidence 456667778888888888776654322222221 12233333347899999999999999887642 234677
Q ss_pred HHHhhhcCc-chHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH--HHHhhHH
Q 007918 477 QVLEMINNP-HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIR 553 (585)
Q Consensus 477 ~l~~~l~~~-~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~~~ 553 (585)
..+.++.++ |+.||.++..++|-.+...|.. ..+..|-.+.+|+..-||+.++.+++.+.-...+. .-...+.
T Consensus 592 s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~----eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~fr 667 (929)
T KOG2062|consen 592 STVSLLSESYNPHVRYGAAMALGIACAGTGLK----EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFR 667 (929)
T ss_pred HHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH----HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHH
Confidence 777777654 8999999999999888877873 44566667778999999999999999886443322 2223455
Q ss_pred HHHHHhcCCCCcc
Q 007918 554 PCLVELTEDPDVD 566 (585)
Q Consensus 554 ~~l~~l~~D~~~~ 566 (585)
..+.+...|...+
T Consensus 668 k~l~kvI~dKhEd 680 (929)
T KOG2062|consen 668 KQLEKVINDKHED 680 (929)
T ss_pred HHHHHHhhhhhhH
Confidence 5555555555444
No 80
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=4.2e-05 Score=74.96 Aligned_cols=436 Identities=14% Similarity=0.105 Sum_probs=224.8
Q ss_pred chHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChH-H
Q 007918 82 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-L 160 (585)
Q Consensus 82 ~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-~ 160 (585)
+..+.+...+..=+.+.|+.-..-|..+++.+.+.--.+.+...+-.++. ..+....+|+.++.++-.++...++. .
T Consensus 107 dl~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLv--S~~~~~~vkqkaALclL~L~r~spDl~~ 184 (938)
T KOG1077|consen 107 DLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLV--SGSSMDYVKQKAALCLLRLFRKSPDLVN 184 (938)
T ss_pred HHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHh--CCcchHHHHHHHHHHHHHHHhcCccccC
Confidence 34445555555555566666667777777776553333333333332221 22335788999999998998887664 4
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhc----------cC--------hhHHHHHHH
Q 007918 161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT----------QD--------DSVRLLAVE 222 (585)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~----------~d--------~~vr~~a~~ 222 (585)
..+...-+.++++|.+..|-.++...+..+++..+ +.+...+.+.+..+. +| +......+.
T Consensus 185 ~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p-~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~r 263 (938)
T KOG1077|consen 185 PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNP-ESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLR 263 (938)
T ss_pred hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCC-HHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHH
Confidence 56888889999999998888899999988888764 444444444333321 11 222333333
Q ss_pred HHHHHhhccCchhhhhhhHHHHHHh---c----cCCChH---HHHHHHHHHHHHHHHhCCcc-cccchHHHHHHhccCCh
Q 007918 223 GCAALGKLLEPQDCVAHILPVIVNF---S----QDKSWR---VRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRDNE 291 (585)
Q Consensus 223 ~l~~l~~~~~~~~~~~~~~~~l~~~---~----~d~~~~---vR~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~ll~d~~ 291 (585)
.|...-. -.+......+...+..+ . +.++.. ++.+.+-....++-.+..+. ....-...+-+++.+.+
T Consensus 264 lLq~~p~-~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE 342 (938)
T KOG1077|consen 264 LLQIYPT-PEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRE 342 (938)
T ss_pred HHHhCCC-CCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccc
Confidence 3332210 00111111122222221 1 122222 22222222222333332211 11233445566677888
Q ss_pred HHHHHHHHHHHHHHHHhhC-HHHHHHhhHHHHHHhcc-CCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCC
Q 007918 292 AEVRIAAAGKVTKFCRILN-PELAIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF 369 (585)
Q Consensus 292 ~~vr~~a~~~l~~l~~~~~-~~~~~~~i~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~ 369 (585)
..+|.-+++.+..++..-. .+.+..+ ...+...++ +++..+|+.++..+-.++..-.. ..++.-+++.+...+
T Consensus 343 ~NiRYLaLEsm~~L~ss~~s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~Na----k~IV~elLqYL~tAd 417 (938)
T KOG1077|consen 343 TNIRYLALESMCKLASSEFSIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNA----KQIVAELLQYLETAD 417 (938)
T ss_pred ccchhhhHHHHHHHHhccchHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchhhH----HHHHHHHHHHHhhcc
Confidence 8889888888888876522 2233233 455556666 88999999999999999875443 344555566666677
Q ss_pred hHHHHHHHHHhHHhhhhhch--hHHhhhHHHHHHHHhcC----CChHHHHHHHHHhHHHHHh-hChhhHHHHHHHHHHHH
Q 007918 370 PDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAED----RHWRVRLAIIEYIPLLASQ-LGVGFFDDKLGALCMQW 442 (585)
Q Consensus 370 ~~vr~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~~----~~~~~r~~~~~~l~~l~~~-~~~~~~~~~l~~~l~~~ 442 (585)
+.+|+..+...+-+++.+.. .++...++..+ .+..| +-|. .+.+. .+.+.+...-..-+...
T Consensus 418 ~sireeivlKvAILaEKyAtDy~WyVdviLqLi-riagd~vsdeVW~----------RvvQiVvNnedlq~yaak~~fe~ 486 (938)
T KOG1077|consen 418 YSIREEIVLKVAILAEKYATDYSWYVDVILQLI-RIAGDYVSDEVWY----------RVVQIVVNNEDLQGYAAKRLFEY 486 (938)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH-HHhcccccHHHHH----------HhheeEecchhhhHHHHHHHHHH
Confidence 88888877777766665543 23333333322 22221 1121 11110 11111111112222222
Q ss_pred ccCC--chHHHHHHHHHHHHHHHHhCHH--HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHH
Q 007918 443 LQDK--VYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVI 518 (585)
Q Consensus 443 l~d~--~~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~ 518 (585)
++.+ ....-.++.-.||.+......+ .........+.+-+.......|.-.+.++..++..++. ....+...+.
T Consensus 487 Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~PE--i~~~v~~vFq 564 (938)
T KOG1077|consen 487 LQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLFPE--IKSNVQKVFQ 564 (938)
T ss_pred HhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhChh--hhHHHHHHHH
Confidence 2221 1122222333333332222111 00112233333334444556666666666666654422 4455666666
Q ss_pred hhcCCCCchHHHHHHHHHHHH
Q 007918 519 NASKDRVPNIKFNVAKVLQSL 539 (585)
Q Consensus 519 ~~l~d~~~~vR~~~~~~l~~l 539 (585)
...+-.+.++++.+++-+.-.
T Consensus 565 ~~~n~~D~ElQqRa~EYLql~ 585 (938)
T KOG1077|consen 565 LYSNLIDVELQQRAVEYLQLS 585 (938)
T ss_pred hhcccCCHHHHHHHHHHHHHH
Confidence 666667888888888777544
No 81
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.82 E-value=6.7e-06 Score=83.24 Aligned_cols=239 Identities=17% Similarity=0.155 Sum_probs=141.1
Q ss_pred hhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHH
Q 007918 237 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQ 316 (585)
Q Consensus 237 ~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 316 (585)
...++|-+.+.....+.++|+.....+...++.-+... --.++.+.+-++|+++.+|..|++.++.+ +...+..
T Consensus 53 mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--lLavNti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~ 126 (757)
T COG5096 53 MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--LLAVNTIQKDLQDPNEEIRGFALRTLSLL----RVKELLG 126 (757)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHH
Confidence 56677777776667888888888888887776544211 12456777778899999999999888876 3345557
Q ss_pred hhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHh-HHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhh
Q 007918 317 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ-LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 395 (585)
Q Consensus 317 ~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 395 (585)
.+++.+.++++|+++.||..|+-++..+-.. +++.+.+. ..-.+..++.|++|.|..+|+.++..+...... .+...
T Consensus 127 ~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~-~~~~~ 204 (757)
T COG5096 127 NIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPELAH-GYSLE 204 (757)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchhhhh-hHHHH
Confidence 7888889999999999999999888877532 33344444 555566777899999999999998888765111 11111
Q ss_pred HHHHHHHHh---cCCC-hHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHH
Q 007918 396 LLPAIVELA---EDRH-WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM 471 (585)
Q Consensus 396 ll~~l~~~~---~~~~-~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 471 (585)
+...+.++. .+.. ...+...++.+......... -...+...+.......+.+|-..++..+-.+...+....+.
T Consensus 205 ~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~--s~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~~~ 282 (757)
T COG5096 205 VILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPD--SAEDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNNLF 282 (757)
T ss_pred HHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCC--cHHHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhccccHH
Confidence 111111111 1110 12222222222221111111 01112222222345566777777777776666655544444
Q ss_pred hhhHHHHHhhhcCc
Q 007918 472 QHITPQVLEMINNP 485 (585)
Q Consensus 472 ~~ll~~l~~~l~~~ 485 (585)
....|.+..++..+
T Consensus 283 ~~~~~~l~~Ll~~~ 296 (757)
T COG5096 283 LISSPPLVTLLAKP 296 (757)
T ss_pred HhhccHHHHHHcCC
Confidence 44555555554444
No 82
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.81 E-value=5.9e-06 Score=77.08 Aligned_cols=484 Identities=14% Similarity=0.096 Sum_probs=273.9
Q ss_pred hcChhHHHHHHHhhhHHHHHHhhChhhhhhh---cc--------ccccc--ccCCchHHHHHHHHHHhcccc--------
Q 007918 18 LKNDDIQLRLNSIRRLSTIARALGEERTRKE---LI--------PFLSE--NNDDDDEVLLAMAEELGVFIP-------- 76 (585)
Q Consensus 18 l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~---l~--------~~l~~--~~d~~~~vr~~~~~~l~~l~~-------- 76 (585)
+.+...++|..|+..+...-+.+.....+.+ ++ |.+.. ++|.++..|..+...+..+..
T Consensus 5 ~r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~ 84 (728)
T KOG4535|consen 5 MRSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSV 84 (728)
T ss_pred hhhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHH
Confidence 5677889999999999887776654333222 22 33333 678888888777666554432
Q ss_pred --ccCCcchHH---h----chH----HHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHH----hhHHHHHHHhhcCcCc
Q 007918 77 --YVGGVEHAH---V----LLP----PLETLCTVEETCVRDKAVESLCRIGSQMRESDLV----DWYIPLVKRLAAGEWF 139 (585)
Q Consensus 77 --~~~~~~~~~---~----l~~----~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~----~~l~~~l~~l~~~~~~ 139 (585)
..|+..+.+ . +.. ++..+.....+.+-...+++|..+....+.+.+. ..+...++++...+++
T Consensus 85 a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~ 164 (728)
T KOG4535|consen 85 AEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDV 164 (728)
T ss_pred HhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 112111111 1 111 1223334556677778889999988887765542 3355566777788888
Q ss_pred cchhhHHhhhHhhcCCCChHHHHHHHHHHHhhcCCCc----------hHHHHHHHHhHHHHHhhhcc---cc--h-----
Q 007918 140 TARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDM----------PMVRRSAASNLGKFAATVEP---AH--L----- 199 (585)
Q Consensus 140 ~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~----------~~vr~~a~~~l~~l~~~~~~---~~--~----- 199 (585)
.+|..+..+++.+...-.. ..++...+..-+...+ +.-+-.+..++......-+. +. .
T Consensus 165 ~v~vs~l~~~~~~v~t~~~--~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~ 242 (728)
T KOG4535|consen 165 NVRVSSLTLLGAIVSTHAP--LPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCI 242 (728)
T ss_pred ChhhHHHHHHHHHHhcCCC--CHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeee
Confidence 9999998888877543221 0111111111111111 11111111111111110000 00 0
Q ss_pred --------HHHHHHHHHHhccC----hhHHHHHHHHHHHHhhccCc-hhhhhhhHHHHHHhccCCChHHHHHHHHHHHHH
Q 007918 200 --------KTDIMSIFEDLTQD----DSVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYEL 266 (585)
Q Consensus 200 --------~~~l~~~l~~l~~d----~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l 266 (585)
......-....+.. ..+|..+.+.+..++..++- ..+...+...+.....+..+.+...++.++.++
T Consensus 243 ~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~l 322 (728)
T KOG4535|consen 243 SIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEEL 322 (728)
T ss_pred eeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHH
Confidence 00011111122222 34899999999998887663 344555666677778899999999999999999
Q ss_pred HHHhCCccccc----chHHH-HHH-hc--------cCCh-HHHHHHHHHHHHHHHHh----hCHHHHHHhhHHHHHHhcc
Q 007918 267 CEAVGPEPTRM----DLVPA-YVR-LL--------RDNE-AEVRIAAAGKVTKFCRI----LNPELAIQHILPCVKELSS 327 (585)
Q Consensus 267 ~~~~~~~~~~~----~l~~~-l~~-ll--------~d~~-~~vr~~a~~~l~~l~~~----~~~~~~~~~i~~~l~~~~~ 327 (585)
+..++.+..++ .+... |-. ++ -|.. +......|.++..+... ++.+ .+...+.+..-++
T Consensus 323 g~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~--~~T~~~~Fl~GC~ 400 (728)
T KOG4535|consen 323 GTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPND--RQTLCITFLLGCN 400 (728)
T ss_pred HHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCc--chhhhHHHHhccc
Confidence 98876433221 11111 111 11 1222 34555666666665432 1111 1344555555555
Q ss_pred CC-cHHHHHHHHHHHHhhchhhCHH---HHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhch---------hHHhh
Q 007918 328 DS-SQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---------DLLSQ 394 (585)
Q Consensus 328 d~-~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------~~~~~ 394 (585)
|. +.-+|.++.++.+...-+-+.. .+.......+...+.|..-.+|..++.+++.+...+.. +.+..
T Consensus 401 d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg 480 (728)
T KOG4535|consen 401 DSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG 480 (728)
T ss_pred chHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH
Confidence 44 4457788888877665444422 23445556677778888889999999999999876521 12222
Q ss_pred hHHHHHHHHh---cCCChHHHHHHHHHhHHHHHhhCh---hhHHH----HHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Q 007918 395 SLLPAIVELA---EDRHWRVRLAIIEYIPLLASQLGV---GFFDD----KLGALCMQWLQDKVYSIRDAAANNLKRLAEE 464 (585)
Q Consensus 395 ~ll~~l~~~~---~~~~~~~r~~~~~~l~~l~~~~~~---~~~~~----~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 464 (585)
.++..+.... .-.+++||..+++.++.+.+.+.+ --+.. .+...+....-.....||..++.+++++.++
T Consensus 481 ~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn 560 (728)
T KOG4535|consen 481 LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKN 560 (728)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcC
Confidence 3333333322 225678999999999888765531 00111 1111121222345678999999999999875
Q ss_pred hCH----HHHHhhhHHHHHhhhcC-cchHHHHHHHHHHHHhhhhcC
Q 007918 465 FGP----EWAMQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMG 505 (585)
Q Consensus 465 ~~~----~~~~~~ll~~l~~~l~~-~~~~~R~~a~~~l~~l~~~~~ 505 (585)
-.. ......+.|.+..++.+ .|+.+|..|..++..-.+-.+
T Consensus 561 ~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~ 606 (728)
T KOG4535|consen 561 PALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQ 606 (728)
T ss_pred ccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCccc
Confidence 322 12346788888887654 689999999999877765433
No 83
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=0.00019 Score=74.96 Aligned_cols=145 Identities=15% Similarity=0.142 Sum_probs=113.5
Q ss_pred hhHHHHHHHHHHHHcc----CCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhhhh
Q 007918 429 GFFDDKLGALCMQWLQ----DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPV 503 (585)
Q Consensus 429 ~~~~~~l~~~l~~~l~----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~-~~~~~~R~~a~~~l~~l~~~ 503 (585)
......+.|++..... -.+++++.+|.-+|+.++.. ..+ |.+.-+|.+...+. +|++.+|.+++-+++.++-.
T Consensus 914 k~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa~-fces~l~llftimeksp~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 914 KSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SAE-FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hHH-HHHHHHHHHHHHHhcCCCceeeecchheccchhhh
Confidence 3344567788877763 34589999999999999763 334 45667888888775 88999999999999999987
Q ss_pred cChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007918 504 MGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 579 (585)
Q Consensus 504 ~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~ 579 (585)
++. ..+...+.+...+.|+++.||.+|...+.+++..- -.-..-.++.+..++.|++++|+..|..-++.+.
T Consensus 992 fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd--miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 992 FPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILND--MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred ccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh--hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 776 56888899999999999999999999999987541 1112346677777899999999999996666554
No 84
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.80 E-value=1.5e-05 Score=74.50 Aligned_cols=287 Identities=13% Similarity=0.128 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHHHhhCHHH-HHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHH----HHH-HhHH-HHHHHhh
Q 007918 293 EVRIAAAGKVTKFCRILNPEL-AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD----ATI-EQLL-PIFLSLL 365 (585)
Q Consensus 293 ~vr~~a~~~l~~l~~~~~~~~-~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~-~~l~-~~l~~~l 365 (585)
.+|..+.+.+..++..++-.. +.-.+.-.+.....+..+.++..+...+..+....+.+ ... +... |+....+
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l 349 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMML 349 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHc
Confidence 478888888888877766431 22334444555567888888888888777776554411 111 1111 1111122
Q ss_pred --------cCC-ChHHHHHHHHHhHHhhhhh--chhHHhhhHHHHHHHHhcC-CChHHHHHHHHHhHHHHHhhChh---h
Q 007918 366 --------KDE-FPDVRLNIISKLDQVNQVI--GIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVG---F 430 (585)
Q Consensus 366 --------~d~-~~~vr~~a~~~l~~l~~~~--~~~~~~~~ll~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~---~ 430 (585)
.|+ .+....+++.++.++...- +-+.-.+...+.+..-..| ++.-+|.+++..+...+-+-+.. .
T Consensus 350 ~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~ 429 (728)
T KOG4535|consen 350 NGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVI 429 (728)
T ss_pred cCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHH
Confidence 121 2445666777777765432 1111123566777666654 44456777776655443332321 1
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCH-----HH----HHhhhHHHHHhhh---cCcchHHHHHHHHHHH
Q 007918 431 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-----EW----AMQHITPQVLEMI---NNPHYLYRMTILRAIS 498 (585)
Q Consensus 431 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-----~~----~~~~ll~~l~~~l---~~~~~~~R~~a~~~l~ 498 (585)
+...-...+...+.|...++|..+..+++.+...+-. +. +...++..+.... .-.++.+|.+++++++
T Consensus 430 fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLg 509 (728)
T KOG4535|consen 430 FVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALG 509 (728)
T ss_pred HHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHh
Confidence 2333455667778899999999999999999876532 11 2233344443332 2236899999999999
Q ss_pred HhhhhcCh------HHHHhc-HHHHHHhhcCCCCchHHHHHHHHHHHHHhhh----chHHHHhhHHHHHHHhc-CCCCcc
Q 007918 499 LLAPVMGS------EITCSR-LLPVVINASKDRVPNIKFNVAKVLQSLIPIV----DQSMVEKTIRPCLVELT-EDPDVD 566 (585)
Q Consensus 499 ~l~~~~~~------~~~~~~-i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~----~~~~~~~~~~~~l~~l~-~D~~~~ 566 (585)
++.+...+ ....+. +...+..........||.++|.++++++++- ........+++.|-.+. +..+-.
T Consensus 510 nllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFK 589 (728)
T KOG4535|consen 510 NLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFK 589 (728)
T ss_pred hHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccce
Confidence 99875542 111111 1222222233447889999999999998652 23356778888888865 456788
Q ss_pred HHHHHHHHHHHHH
Q 007918 567 VRFFATQAIQSID 579 (585)
Q Consensus 567 Vr~~a~~al~~l~ 579 (585)
||..|+.++..-+
T Consensus 590 VRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 590 VRIRAAAALSVPG 602 (728)
T ss_pred EeehhhhhhcCCC
Confidence 9999998886543
No 85
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=3.5e-05 Score=76.06 Aligned_cols=344 Identities=15% Similarity=0.125 Sum_probs=190.1
Q ss_pred cCcCccchhhHHhhhHhhcCCCChHHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhc---
Q 007918 135 AGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT--- 211 (585)
Q Consensus 135 ~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~--- 211 (585)
+.+++.+|-.....++.+- .++....++|.+...++...+-||+.|.-+++.+.+.. +...+....++...+
T Consensus 109 QHPNEyiRG~TLRFLckLk---E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~--~~L~pDapeLi~~fL~~e 183 (948)
T KOG1058|consen 109 QHPNEYIRGSTLRFLCKLK---EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF--EHLIPDAPELIESFLLTE 183 (948)
T ss_pred cCchHhhcchhhhhhhhcC---cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh--hhhcCChHHHHHHHHHhc
Confidence 3456666755544443321 23567788999999999999999999999999988763 222233333333322
Q ss_pred cChhHHHHHHHHHHHHhhccCchhhhhhhHHHHHHh---ccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcc
Q 007918 212 QDDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNF---SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR 288 (585)
Q Consensus 212 ~d~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~---~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~ 288 (585)
+|+..++.|.-.|-.. .++ ..+.++... ..+-+.......++.+...+..-+ ......+..+..++.
T Consensus 184 ~DpsCkRNAFi~L~~~----D~E----rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p--~~~~~~i~~i~~lL~ 253 (948)
T KOG1058|consen 184 QDPSCKRNAFLMLFTT----DPE----RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANP--AEKARYIRCIYNLLS 253 (948)
T ss_pred cCchhHHHHHHHHHhc----CHH----HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCH--HHhhHHHHHHHHHHh
Confidence 2345444444333322 111 122222222 222234455566666666655221 113456777888888
Q ss_pred CChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhc-cCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcC
Q 007918 289 DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS-SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD 367 (585)
Q Consensus 289 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 367 (585)
..++.|+..|..++..+... +..+ ...-..+.+++ +.++-.++.-...-+..+. .+.+..++.+.--+...+..
T Consensus 254 stssaV~fEaa~tlv~lS~~--p~al-k~Aa~~~i~l~~kesdnnvklIvldrl~~l~--~~~~~il~~l~mDvLrvLss 328 (948)
T KOG1058|consen 254 STSSAVIFEAAGTLVTLSND--PTAL-KAAASTYIDLLVKESDNNVKLIVLDRLSELK--ALHEKILQGLIMDVLRVLSS 328 (948)
T ss_pred cCCchhhhhhcceEEEccCC--HHHH-HHHHHHHHHHHHhccCcchhhhhHHHHHHHh--hhhHHHHHHHHHHHHHHcCc
Confidence 87888888887777666432 2211 11122222222 2233334434444444443 12233444555556677888
Q ss_pred CChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHh---cCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHcc
Q 007918 368 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA---EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ 444 (585)
Q Consensus 368 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~---~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 444 (585)
++-+||..++.-.-.++..-..+.+...+-..+.+.- .+++...|...++.++..+-.++. +...++|.+++++.
T Consensus 329 ~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~ll~fis 406 (948)
T KOG1058|consen 329 PDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLLLDFIS 406 (948)
T ss_pred ccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHHHHHhc
Confidence 8899999988876665544333322222222222211 345677899999999988766543 46778999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcC-cchHHHHHHHHHHHHhhh
Q 007918 445 DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN-PHYLYRMTILRAISLLAP 502 (585)
Q Consensus 445 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~-~~~~~R~~a~~~l~~l~~ 502 (585)
|.+..--...+..+....+.++. ....++..++..+.. ....+-.++++.+|..+.
T Consensus 407 D~N~~aas~vl~FvrE~iek~p~--Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 407 DSNEAAASDVLMFVREAIEKFPN--LRASIIEKLLETFPQIRSSKICRGALWILGEYCE 463 (948)
T ss_pred cCCHHHHHHHHHHHHHHHHhCch--HHHHHHHHHHHhhhhhcccccchhHHHHHHHHHh
Confidence 99987776677777766665543 123344444433211 223334455555555443
No 86
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.78 E-value=1.9e-06 Score=88.73 Aligned_cols=359 Identities=12% Similarity=0.086 Sum_probs=214.5
Q ss_pred HHHHHHHhhcCcCccchhhHHhhhHhhcCCCChHHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccc-hHHHHH
Q 007918 126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH-LKTDIM 204 (585)
Q Consensus 126 l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~ 204 (585)
++++.......+....|.........+ ..+ ....+....+..+..-..+..-..++.++..++...+.+. ....++
T Consensus 64 l~~~~~~~l~~~~~~~~~~~~~~~~~i-~~~--~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~ 140 (815)
T KOG1820|consen 64 LLSFGLKCLDSKRVNIRDTKTQSLLRI-GKL--EDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFI 140 (815)
T ss_pred eccchhhhcccccccccCcchhHHHHH-HHh--hhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCcccccc
Confidence 555555555544333343333333333 111 1234455555566666666666677777777776665432 122233
Q ss_pred HHHHHhccChhHHHHHHHHHHHHhhccCchhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCccc-----ccch
Q 007918 205 SIFEDLTQDDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-----RMDL 279 (585)
Q Consensus 205 ~~l~~l~~d~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~-----~~~l 279 (585)
+.+-.+. |-+||..+...+..+....+.... .. ..+..+-...+.+....|.... ...+
T Consensus 141 ~~~~~l~-D~nvr~~~~~l~v~i~r~~G~~~~-~~--------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 204 (815)
T KOG1820|consen 141 KHVGSLA-DKNVRSEASKLLVEIYRWTGDASK-PL--------------LFKASAPGLMGKLGSYQGKSMMSFFNEKRPL 204 (815)
T ss_pred ccCcccc-ccccchhhcccchhhhhhcCCCcC-cc--------------cchhhhHHHHHHHHhhccccccccccccccc
Confidence 3333333 556888888888887765554211 11 1144555555555555443211 0011
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHH-----------HHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhh
Q 007918 280 VPAYVRLLRDNEAEVRIAAAGKVTKF-----------CRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL 348 (585)
Q Consensus 280 ~~~l~~ll~d~~~~vr~~a~~~l~~l-----------~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~ 348 (585)
.+....--.++++.-+...-...... ...+.+......+-+.+...+.+++|.-|..++..+....+.-
T Consensus 205 ~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~ 284 (815)
T KOG1820|consen 205 LKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEA 284 (815)
T ss_pred cccccccccCCChhhcccccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhcc
Confidence 11111111122222211111111111 0112233444566667777778888888888888877776554
Q ss_pred C---HHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchh--HHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHH
Q 007918 349 G---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 423 (585)
Q Consensus 349 ~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~ 423 (585)
+ ...+...+...+...+.|.+-.|-..++..|..++..++.. .+...+.|.+.+.+.+....+|..+..++..+.
T Consensus 285 ~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ 364 (815)
T KOG1820|consen 285 KKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAIL 364 (815)
T ss_pred ccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHH
Confidence 4 12234455666666778888888888888888888877653 344567788888888888888888888887777
Q ss_pred HhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCH----HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHH
Q 007918 424 SQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP----EWAMQHITPQVLEMINNPHYLYRMTILRAISL 499 (585)
Q Consensus 424 ~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~ 499 (585)
+..+ ...+.+.+...+.+.++.+|......+....+.+++ ......+.|.+....+|.+..||.++..+++.
T Consensus 365 ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~ 440 (815)
T KOG1820|consen 365 NSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAA 440 (815)
T ss_pred hccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHH
Confidence 6433 345677778888888888888888888888877762 12346788888888888888888888888888
Q ss_pred hhhhcChH
Q 007918 500 LAPVMGSE 507 (585)
Q Consensus 500 l~~~~~~~ 507 (585)
+...+|..
T Consensus 441 v~k~~Ge~ 448 (815)
T KOG1820|consen 441 VMKVHGEE 448 (815)
T ss_pred HHHHhhHH
Confidence 88888865
No 87
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.77 E-value=6.2e-05 Score=74.12 Aligned_cols=304 Identities=16% Similarity=0.165 Sum_probs=180.5
Q ss_pred ChHHHHHHHHHHHHHHHHhCCcc---c-----ccchHHHHHHhcc-----C--ChHHHHHHHHHHHHHHHHhhCHHHH--
Q 007918 252 SWRVRYMVANQLYELCEAVGPEP---T-----RMDLVPAYVRLLR-----D--NEAEVRIAAAGKVTKFCRILNPELA-- 314 (585)
Q Consensus 252 ~~~vR~~~~~~l~~l~~~~~~~~---~-----~~~l~~~l~~ll~-----d--~~~~vr~~a~~~l~~l~~~~~~~~~-- 314 (585)
+...-...+.++..+........ . ...++|.+++..- + .++.+-..+...+..+...++.+.-
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 44445555666665554443322 0 0125555555431 1 1356666666777777777776532
Q ss_pred -HHhhHHHHHH-----hcc-CCc--HHHHHHH----HHHHHhhchhhCHHHHHHhHHHHHHHh-hcCCChHHHHHHHHHh
Q 007918 315 -IQHILPCVKE-----LSS-DSS--QHVRSAL----ASVIMGMAPLLGKDATIEQLLPIFLSL-LKDEFPDVRLNIISKL 380 (585)
Q Consensus 315 -~~~i~~~l~~-----~~~-d~~--~~vr~~a----~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~~vr~~a~~~l 380 (585)
.+.+...+.. -+. +.+ +...... ...++.+-+...-. ..+.++..+... ....++..|..+++.+
T Consensus 136 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~l 214 (415)
T PF12460_consen 136 ILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP-DLEELLQSLLNLALSSEDEFSRLAALQLL 214 (415)
T ss_pred HHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 2333333320 000 111 1112222 23333333222211 122344444444 4455689999999999
Q ss_pred HHhhhhhchhHHhhhHHHHHHHHh-cCCChHHHHHHHHHhHHHHHhh--ChhhHHHHHHHHHHHHccCCchHHHHHHHHH
Q 007918 381 DQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQL--GVGFFDDKLGALCMQWLQDKVYSIRDAAANN 457 (585)
Q Consensus 381 ~~l~~~~~~~~~~~~ll~~l~~~~-~~~~~~~r~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 457 (585)
+.+....+.+...+.++..+.... .......|..+++.+.-+.+.+ ........+...+..++.| .++...+.+.
T Consensus 215 a~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~ 292 (415)
T PF12460_consen 215 ASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKA 292 (415)
T ss_pred HHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHH
Confidence 999988765543345555555444 3444555666666555554433 1122345567778888888 7788899999
Q ss_pred HHHHHHHhCH---------------HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHH---HhcHHHHHHh
Q 007918 458 LKRLAEEFGP---------------EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT---CSRLLPVVIN 519 (585)
Q Consensus 458 l~~l~~~~~~---------------~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~---~~~i~~~l~~ 519 (585)
++.+....+. ..+...++|.+.+...+.+...|.+.+.++..+.++.+.... .+.++|.+++
T Consensus 293 f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlq 372 (415)
T PF12460_consen 293 FGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQ 372 (415)
T ss_pred HhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 9888764211 123356788888888877777999999999999999887754 6789999999
Q ss_pred hcCCCCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHH
Q 007918 520 ASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVE 558 (585)
Q Consensus 520 ~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~ 558 (585)
.++-+++.+|.+++.++..+....+.- .+.+.++|.|.+
T Consensus 373 sL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 373 SLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998765221 233445555443
No 88
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.76 E-value=4.9e-05 Score=74.85 Aligned_cols=285 Identities=14% Similarity=0.121 Sum_probs=157.8
Q ss_pred hhHHHHHHHHHHHHHHhhcChhh------H--HhhHHHHHHHhhcCc-----C--ccchhhHHhhhHhhcCCCChHHHHH
Q 007918 99 ETCVRDKAVESLCRIGSQMRESD------L--VDWYIPLVKRLAAGE-----W--FTARVSACGLFHIAYPSAPDILKTE 163 (585)
Q Consensus 99 ~~~vr~~a~~~l~~l~~~~~~~~------~--~~~l~~~l~~l~~~~-----~--~~~r~~a~~~l~~~~~~~~~~~~~~ 163 (585)
+.......+.++..+.+....+. . ...++|.+.++.... . +.+-..++.++..+...++.+..++
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45556677777777766443222 1 122666666554322 1 2334456677788888888876555
Q ss_pred HHHHHHhhcC----------CCc--hHHHHHHHHhHHHHHhhhcccch---HHHHHHHHHHhccC---hhHHHHHHHHHH
Q 007918 164 LRSIYTQLCQ----------DDM--PMVRRSAASNLGKFAATVEPAHL---KTDIMSIFEDLTQD---DSVRLLAVEGCA 225 (585)
Q Consensus 164 l~~~l~~l~~----------d~~--~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~l~~d---~~vr~~a~~~l~ 225 (585)
+..-+..+.- +.. ..........+..+...+.++.. ...++..+..+... +..|..+.+.+.
T Consensus 136 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la 215 (415)
T PF12460_consen 136 ILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLA 215 (415)
T ss_pred HHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 5554444332 111 11222333333344444433322 22234444443322 568999999999
Q ss_pred HHhhccCchhhhhhhHHHHHHhc-cCCChHHHHHHHHHHHHHHHHh--CCcccccchHHHHHHhccCChHHHHHHHHHHH
Q 007918 226 ALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAV--GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 302 (585)
Q Consensus 226 ~l~~~~~~~~~~~~~~~~l~~~~-~d~~~~vR~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l 302 (585)
.++-+++++...+.++..+.... .......|..+.+.+.-+++++ ........++..+.+++.| +++...+.+++
T Consensus 216 ~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f 293 (415)
T PF12460_consen 216 SLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAF 293 (415)
T ss_pred HHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHH
Confidence 99988877655555555555444 4555667777777777777664 2222234678888888888 67888888888
Q ss_pred HHHHHhhC---------------HHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHH---HHhHHHHHHHh
Q 007918 303 TKFCRILN---------------PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT---IEQLLPIFLSL 364 (585)
Q Consensus 303 ~~l~~~~~---------------~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~ 364 (585)
+.+....+ ...+...++|.+.+..++.+...|.....++..+.+.++.... .+.++|.+.+.
T Consensus 294 ~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqs 373 (415)
T PF12460_consen 294 GILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQS 373 (415)
T ss_pred hhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence 88765421 1112234444444444444444555555555555555554332 33455555555
Q ss_pred hcCCChHHHHHHHHHhHHhhh
Q 007918 365 LKDEFPDVRLNIISKLDQVNQ 385 (585)
Q Consensus 365 l~d~~~~vr~~a~~~l~~l~~ 385 (585)
+.-++++++.+++..+..+..
T Consensus 374 L~~~~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 374 LSLPDADVLLSSLETLKMILE 394 (415)
T ss_pred hCCCCHHHHHHHHHHHHHHHH
Confidence 555555555555555555443
No 89
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=0.0005 Score=70.60 Aligned_cols=428 Identities=13% Similarity=0.080 Sum_probs=217.1
Q ss_pred HHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhccccccc-ccC--CchHHHHHHHHHHhccccccC-Cc--------
Q 007918 14 LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NND--DDDEVLLAMAEELGVFIPYVG-GV-------- 81 (585)
Q Consensus 14 l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d--~~~~vr~~~~~~l~~l~~~~~-~~-------- 81 (585)
.+.+--+.|++.|..|-..|.++-+..| .++.+.+ +.+ .+..||++++-.+.+.+..-. ..
T Consensus 9 ~~~~T~d~d~~~R~~AE~~L~q~~K~pg-------Fv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~ 81 (1010)
T KOG1991|consen 9 IFRATIDSDAKERKAAEQQLNQLEKQPG-------FVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFG 81 (1010)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhhcCCc-------HHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCC
Confidence 3333345569999999988877654443 3333444 333 244789999888876543211 00
Q ss_pred ---chHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCC--
Q 007918 82 ---EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA-- 156 (585)
Q Consensus 82 ---~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~-- 156 (585)
+-...+-.-+...+......+|-.-..++..|+..--| ..+..+.+.+..+.++.+...-..+..++..++..-
T Consensus 82 I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~ 160 (1010)
T KOG1991|consen 82 IPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEW 160 (1010)
T ss_pred CChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhh
Confidence 11111222222222233556666666666666554333 345667788877777765444444555544443211
Q ss_pred --Ch----------HHHHHHHHHHHhhcCCCchHHH---HHHHHhHHHHHhh-hcccchHHHHHHHHHHhccChhHHHHH
Q 007918 157 --PD----------ILKTELRSIYTQLCQDDMPMVR---RSAASNLGKFAAT-VEPAHLKTDIMSIFEDLTQDDSVRLLA 220 (585)
Q Consensus 157 --~~----------~~~~~l~~~l~~l~~d~~~~vr---~~a~~~l~~l~~~-~~~~~~~~~l~~~l~~l~~d~~vr~~a 220 (585)
.+ ...+.+.+....++.+++..+- +..++.+..++.. ++..-.. .+.-...
T Consensus 161 k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~-------------~~~f~~W 227 (1010)
T KOG1991|consen 161 KKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSA-------------PETFTSW 227 (1010)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhC-------------chhHHHH
Confidence 11 1223334444445555433322 2222222222211 1111001 1111112
Q ss_pred HHHHHHHhhccCchhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCccccc----------------chHHHHH
Q 007918 221 VEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM----------------DLVPAYV 284 (585)
Q Consensus 221 ~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~----------------~l~~~l~ 284 (585)
++.+-.++..-.+.+... +-| ..-.+.+-|++++=++..+.++....|+..... .++..++
T Consensus 228 ~~l~l~i~~rpvP~E~l~-~d~--e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~l 304 (1010)
T KOG1991|consen 228 MELFLSILNRPVPVEVLS-LDP--EDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFL 304 (1010)
T ss_pred HHHHHHHHcCCCChhccc-CCh--hhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 222222222211111000 000 001123446677777777777777766532110 1122222
Q ss_pred Hhcc---C---ChHHHHHHHHHHHHHHHHh------hCHH---HHHHhhHHHHHH------h-ccCCcHHHHH-------
Q 007918 285 RLLR---D---NEAEVRIAAAGKVTKFCRI------LNPE---LAIQHILPCVKE------L-SSDSSQHVRS------- 335 (585)
Q Consensus 285 ~ll~---d---~~~~vr~~a~~~l~~l~~~------~~~~---~~~~~i~~~l~~------~-~~d~~~~vr~------- 335 (585)
+.+. . -.++|-..++..+...... +++. .+.+.++|.++- + -+|++..+|.
T Consensus 305 k~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed 384 (1010)
T KOG1991|consen 305 KILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFED 384 (1010)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcc
Confidence 2211 1 1133444444444333221 1111 111233444321 1 1255555554
Q ss_pred ------HHHHHHHhhchhhCHHHHHHhHHHHHHHhhc------CC--ChHHHHHHHHHhHHhhhhhchh-----HHhhhH
Q 007918 336 ------ALASVIMGMAPLLGKDATIEQLLPIFLSLLK------DE--FPDVRLNIISKLDQVNQVIGID-----LLSQSL 396 (585)
Q Consensus 336 ------~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------d~--~~~vr~~a~~~l~~l~~~~~~~-----~~~~~l 396 (585)
++...+..++...|++. .+.+++.+...++ .+ ++.-+.+|+..++.++..+.+. .+...+
T Consensus 385 ~~sp~~Aa~~~l~~~~~KR~ke~-l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~fl 463 (1010)
T KOG1991|consen 385 GYSPDTAALDFLTTLVSKRGKET-LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFL 463 (1010)
T ss_pred cCCCcHHHHHHHHHHHHhcchhh-hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHH
Confidence 56666777776666544 4566666666665 33 3444568888999988766532 222344
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHHHH-HhhChhhHHHHHHHHHHHHcc-CCchHHHHHHHHHHHHHHHHhC
Q 007918 397 LPAIVELAEDRHWRVRLAIIEYIPLLA-SQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFG 466 (585)
Q Consensus 397 l~~l~~~~~~~~~~~r~~~~~~l~~l~-~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~ 466 (585)
.+.+...++++-...|..+++.++.++ ..+.........+....+++. |.+-.||..|+-+|..+.....
T Consensus 464 v~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~ 535 (1010)
T KOG1991|consen 464 VNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQE 535 (1010)
T ss_pred HHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcch
Confidence 556666778899999999999999998 445544455667777778777 9999999999999999987644
No 90
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.71 E-value=1.4e-07 Score=70.06 Aligned_cols=84 Identities=24% Similarity=0.366 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhhhhcChHH--HHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCCC
Q 007918 489 YRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPD 564 (585)
Q Consensus 489 ~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~l~~D~~ 564 (585)
.|.+++.++..++..++... +.+.++|.++.++.|+++.||..+++++.++....+.. .+...+++.|.++..|+|
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 37778888888877766543 57889999999999999999999999999998777665 345778899999999999
Q ss_pred ccHHHHHH
Q 007918 565 VDVRFFAT 572 (585)
Q Consensus 565 ~~Vr~~a~ 572 (585)
++||..|.
T Consensus 82 ~~Vr~~a~ 89 (97)
T PF12755_consen 82 ENVRSAAE 89 (97)
T ss_pred hhHHHHHH
Confidence 99998874
No 91
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=3.7e-05 Score=72.41 Aligned_cols=257 Identities=16% Similarity=0.114 Sum_probs=160.4
Q ss_pred hhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHH--HHHhHHHHH-HHhhcCCChHHHHHHHHHhHHhhhhhchhHHh
Q 007918 317 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIF-LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS 393 (585)
Q Consensus 317 ~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l-~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 393 (585)
.++-.+..-..|++..+|..++..+++.+...+.+. ....++..+ ..+..+.+.+|...+..+|..+.+......+.
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~ 337 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE 337 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh
Confidence 344445556779999999999999999998866433 233444444 44455557899999999999988877665554
Q ss_pred hhHHH---HHHHHhcCCChHHHHHHHHHhHHHHHhhC---hhhHHHHHHHH---HHHHccCCchHHHHHHHHHHHHHHHH
Q 007918 394 QSLLP---AIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGAL---CMQWLQDKVYSIRDAAANNLKRLAEE 464 (585)
Q Consensus 394 ~~ll~---~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~~~~~l~~~---l~~~l~d~~~~vr~~a~~~l~~l~~~ 464 (585)
..+++ .+..+..+.+..+|.+++..++.+++..| .++|.+.+..- +.-.++|+++.|-. |+... +..
T Consensus 338 ~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~---~~~ 413 (533)
T KOG2032|consen 338 SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSE---LRT 413 (533)
T ss_pred hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHH---HHh
Confidence 44444 45567889999999999999999999876 34454444322 22346888887743 33333 232
Q ss_pred hCHHHHHhhhHHHHHhhhcCcch-HHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh
Q 007918 465 FGPEWAMQHITPQVLEMINNPHY-LYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 543 (585)
Q Consensus 465 ~~~~~~~~~ll~~l~~~l~~~~~-~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~ 543 (585)
.++....+.+....-+.+ |... ..+.-.-.++..+.... ++ ..-.+.....-+++...+.||.++...-+....++
T Consensus 414 c~p~l~rke~~~~~q~~l-d~~~~~~q~Fyn~~c~~L~~i~-~d-~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l 490 (533)
T KOG2032|consen 414 CYPNLVRKELYHLFQESL-DTDMARFQAFYNQWCIQLNHIH-PD-ILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSL 490 (533)
T ss_pred cCchhHHHHHHHHHhhhh-HHhHHHHHHHHHHHHHHHhhhC-HH-HHHHHHHhchhheecchHHHHHHHHHHHHHHHHHh
Confidence 333322222222222222 2221 11111111222222211 11 22233334445567778899999888888877666
Q ss_pred chH----HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007918 544 DQS----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 544 ~~~----~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~ 580 (585)
.+. ....++...+..+..|+-++|+..|.+|++.+.+
T Consensus 491 ~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 491 VRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 543 3456678888889999999999999999987653
No 92
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.67 E-value=0.00015 Score=74.43 Aligned_cols=366 Identities=14% Similarity=0.175 Sum_probs=221.9
Q ss_pred HHHHhccC-hhHHHHHHHHHHHHhhccCc--hhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCC--cccccchH
Q 007918 206 IFEDLTQD-DSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLV 280 (585)
Q Consensus 206 ~l~~l~~d-~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~ 280 (585)
-+..+... +.+-..+...|.++++...- .-....+++.+.++++.++..+...+...|.+++-.-.. ......++
T Consensus 254 k~~~l~~kQeqLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV 333 (708)
T PF05804_consen 254 KLQTLIRKQEQLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIV 333 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCH
Confidence 33344444 45555677788888876543 233456888899999988999999888888887643221 22345789
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHhhC--HHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHH--HHHHh
Q 007918 281 PAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQ 356 (585)
Q Consensus 281 ~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ 356 (585)
+.+.+++..++..++..+++.|..++-.-. .......++|.+..++.+++ .|..+...+..++..-... .....
T Consensus 334 ~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~Td 411 (708)
T PF05804_consen 334 EKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTD 411 (708)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcc
Confidence 999999998888999999999998865322 12233457888999998765 4455666777765432211 12234
Q ss_pred HHHHHHHhh-cCCChHHHHHHHHHhHHhhhhhchhH-H-hhhHHHHHHHH-hcCCChHHHHHHHHHhHHHHHhhCh--hh
Q 007918 357 LLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDL-L-SQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGV--GF 430 (585)
Q Consensus 357 l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~-~-~~~ll~~l~~~-~~~~~~~~r~~~~~~l~~l~~~~~~--~~ 430 (585)
.+|.+.+++ ..+++.+...++..+-+++..-..-. + ...-++.+... ++..+ ...+..+..++.+-|+ ..
T Consensus 412 cIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D----~lLlKlIRNiS~h~~~~k~~ 487 (708)
T PF05804_consen 412 CIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD----PLLLKLIRNISQHDGPLKEL 487 (708)
T ss_pred hHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc----HHHHHHHHHHHhcCchHHHH
Confidence 667776654 44455665555555544443221110 0 11223444432 22222 2244566666655432 12
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHh--CHHH--H--HhhhHHHHHhhhcCc--chHHHHHHHHHHHHhhh
Q 007918 431 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF--GPEW--A--MQHITPQVLEMINNP--HYLYRMTILRAISLLAP 502 (585)
Q Consensus 431 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~~--~--~~~ll~~l~~~l~~~--~~~~R~~a~~~l~~l~~ 502 (585)
|.+.+.+++--+...++.+ ..++++|.+.... +.++ . ...++|.+.+.+..+ ...+...++.++|.++.
T Consensus 488 f~~~i~~L~~~v~~~~~ee---~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~ 564 (708)
T PF05804_consen 488 FVDFIGDLAKIVSSGDSEE---FVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS 564 (708)
T ss_pred HHHHHHHHHHHhhcCCcHH---HHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC
Confidence 3333333332222333444 4556666555422 2122 2 247899999888655 34677778888887774
Q ss_pred hcChH--HHHhcHHHHHHhhcCCC--CchHHHHHHHHHHHHHhhhchH-H--HHhhHHHHHHHhcCCCCccHHHHHHHHH
Q 007918 503 VMGSE--ITCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQS-M--VEKTIRPCLVELTEDPDVDVRFFATQAI 575 (585)
Q Consensus 503 ~~~~~--~~~~~i~~~l~~~l~d~--~~~vR~~~~~~l~~l~~~~~~~-~--~~~~~~~~l~~l~~D~~~~Vr~~a~~al 575 (585)
.-... .....+.+.++.++++. +.+.-..++.++.++..+-... . ....+...|..++.|++.+||..+..++
T Consensus 565 d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~L 644 (708)
T PF05804_consen 565 DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNAL 644 (708)
T ss_pred CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHH
Confidence 32222 23467788888888654 5667777888888877552221 1 1245778888899999999999999999
Q ss_pred HHHHH
Q 007918 576 QSIDH 580 (585)
Q Consensus 576 ~~l~~ 580 (585)
.-++.
T Consensus 645 dii~e 649 (708)
T PF05804_consen 645 DIIAE 649 (708)
T ss_pred HHHHH
Confidence 88765
No 93
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.63 E-value=5.9e-07 Score=66.73 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhhCHH--HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHH--HHHhHHHHHHHhhcCCCh
Q 007918 295 RIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFP 370 (585)
Q Consensus 295 r~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~ 370 (585)
|+.++-+|..++..++.. .+.++++|.+...+.|++|+||..+++++.++++..+.+. +.+.+++.+.+++.|+++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE 82 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 444445555544444433 2334555555555555555555555555555555544332 234455555555566666
Q ss_pred HHHHHH
Q 007918 371 DVRLNI 376 (585)
Q Consensus 371 ~vr~~a 376 (585)
.||.+|
T Consensus 83 ~Vr~~a 88 (97)
T PF12755_consen 83 NVRSAA 88 (97)
T ss_pred hHHHHH
Confidence 655544
No 94
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=98.53 E-value=6e-06 Score=81.55 Aligned_cols=231 Identities=16% Similarity=0.187 Sum_probs=172.1
Q ss_pred hhHHHHHHHHHHHHhhccCchhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcc-CChH
Q 007918 214 DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR-DNEA 292 (585)
Q Consensus 214 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~-d~~~ 292 (585)
+..+....+.|..+...++.......++|.+...+.+.. .--...-.+..+++......+...++|.+...++ ....
T Consensus 287 n~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~--~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~~ 364 (700)
T KOG2137|consen 287 NSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTK--MVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDPK 364 (700)
T ss_pred cHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhcccc--ccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCcc
Confidence 446677888899999999988888889998887664432 1112222333344444434444567788777776 3346
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHh-hcCCChH
Q 007918 293 EVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL-LKDEFPD 371 (585)
Q Consensus 293 ~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~~ 371 (585)
+++...++.+..+.+...++.+.++++|.+...++|.+..++..++..+..+++.+......+.++|.+..+ ++.++..
T Consensus 365 ~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~ 444 (700)
T KOG2137|consen 365 QALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLY 444 (700)
T ss_pred cchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchH
Confidence 688888999999999999999999999999999999999999999999999999998778888999999776 5567789
Q ss_pred HHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhh--ChhhHHHHHHHHHHHHccCCc
Q 007918 372 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL--GVGFFDDKLGALCMQWLQDKV 447 (585)
Q Consensus 372 vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~ 447 (585)
|+.+++.+++.+.+.+..-...+.++|.+. ..+..++.+-...+.....+.-.. |.+.....++|.++.+...+.
T Consensus 445 vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~-~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 445 VKVNVLPCLAGLIQRLDKAAVLDELLPILK-CIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 999999999999987776666666666554 445556666666666655554322 346777888998887765554
No 95
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.51 E-value=5.5e-07 Score=67.21 Aligned_cols=86 Identities=28% Similarity=0.413 Sum_probs=59.7
Q ss_pred HHHHHhhh-cCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHH
Q 007918 475 TPQVLEMI-NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIR 553 (585)
Q Consensus 475 l~~l~~~l-~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~ 553 (585)
+|.+++.+ +++++.+|..++.+++.+.. +...|.+..+++|+++.||..++.+++.+.. +...
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~ 64 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--------PEAIPALIELLKDEDPMVRRAAARALGRIGD--------PEAI 64 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence 35566666 77788888888888874432 4667777888888888888888888887731 3466
Q ss_pred HHHHHhc-CCCCccHHHHHHHHHH
Q 007918 554 PCLVELT-EDPDVDVRFFATQAIQ 576 (585)
Q Consensus 554 ~~l~~l~-~D~~~~Vr~~a~~al~ 576 (585)
+.|.+++ +|++..||..|.++|+
T Consensus 65 ~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 65 PALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHhhcC
Confidence 6666644 4455667888877764
No 96
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.49 E-value=1.8e-05 Score=70.88 Aligned_cols=203 Identities=12% Similarity=0.080 Sum_probs=114.7
Q ss_pred CChHHHHHHHHHhHHhhhhhchhHHh--hhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHH-HHHHcc
Q 007918 368 EFPDVRLNIISKLDQVNQVIGIDLLS--QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL-CMQWLQ 444 (585)
Q Consensus 368 ~~~~vr~~a~~~l~~l~~~~~~~~~~--~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~-l~~~l~ 444 (585)
.++.+++.+..+++..+..-..+.+. -..++.+..++.++++.+|..++.++..++........-+..++. +.....
T Consensus 25 ~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s 104 (254)
T PF04826_consen 25 EDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVS 104 (254)
T ss_pred CChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhc
Confidence 35666666666666654332222111 134566666777777777777776666655433222111112222 222222
Q ss_pred C-CchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcC--hHHHHhcHHHHHHhhc
Q 007918 445 D-KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG--SEITCSRLLPVVINAS 521 (585)
Q Consensus 445 d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~--~~~~~~~i~~~l~~~l 521 (585)
+ .+.+++.+++++|..+.-...........+|.++.++...+..+|..++.++.+++..-. .+....+.+..++.++
T Consensus 105 ~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf 184 (254)
T PF04826_consen 105 SPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLF 184 (254)
T ss_pred CCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHH
Confidence 2 356777777777777754322222334456677777777777777777777777775322 2333445566666666
Q ss_pred CCC-CchHHHHHHHHHHHHHhhhchH------------------HHHhhHHHHHHHhcCCCCccHHHH
Q 007918 522 KDR-VPNIKFNVAKVLQSLIPIVDQS------------------MVEKTIRPCLVELTEDPDVDVRFF 570 (585)
Q Consensus 522 ~d~-~~~vR~~~~~~l~~l~~~~~~~------------------~~~~~~~~~l~~l~~D~~~~Vr~~ 570 (585)
+.. ..++-..++..+..+.....++ .-.+.+-..|..+...+|++||..
T Consensus 185 ~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 185 NSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQ 252 (254)
T ss_pred ccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhh
Confidence 654 5666667777777775554321 011335566667778899999864
No 97
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.47 E-value=2.4e-05 Score=70.07 Aligned_cols=204 Identities=14% Similarity=0.101 Sum_probs=134.3
Q ss_pred CCcHHHHHHHHHHHHhhchhhCHHHHHH--hHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhc
Q 007918 328 DSSQHVRSALASVIMGMAPLLGKDATIE--QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE 405 (585)
Q Consensus 328 d~~~~vr~~a~~~l~~l~~~~~~~~~~~--~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~ 405 (585)
..++.+++.+..+++..+..-....... ..++.+.+++.++++.+|..|+.++..++.........+..++.+.+...
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 5677888888888887654332222222 35788889999999999999999999887766554444555565555333
Q ss_pred C--CChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHh--CHHHHHhhhHHHHHhh
Q 007918 406 D--RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF--GPEWAMQHITPQVLEM 481 (585)
Q Consensus 406 ~--~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~ll~~l~~~ 481 (585)
+ .+..++.+++..+..+.-.-.........+|.++.++..++..+|..+++.|..+...- ..+....+.++.++.+
T Consensus 104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~L 183 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSL 183 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHH
Confidence 2 35677788888887774322212222335677788888899999999999999987632 2344455677777777
Q ss_pred hcCc-chHHHHHHHHHHHHhhhhcChHHH------------------HhcHHHHHHhhcCCCCchHHHH
Q 007918 482 INNP-HYLYRMTILRAISLLAPVMGSEIT------------------CSRLLPVVINASKDRVPNIKFN 531 (585)
Q Consensus 482 l~~~-~~~~R~~a~~~l~~l~~~~~~~~~------------------~~~i~~~l~~~l~d~~~~vR~~ 531 (585)
+... +..+...++..+.+|..++.++.. .+.+-.-+..+..+++++||..
T Consensus 184 f~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 184 FNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQ 252 (254)
T ss_pred HccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhh
Confidence 7665 567788888888888765544310 1234444555556667777654
No 98
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.47 E-value=2.3e-05 Score=66.96 Aligned_cols=111 Identities=17% Similarity=0.170 Sum_probs=75.0
Q ss_pred cHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCCh
Q 007918 330 SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW 409 (585)
Q Consensus 330 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~ 409 (585)
++.+|..++-+++.++..++ ...+...|.+...|+|+++.||..|+..+..+... +.-.+...++..+...+.|+++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~--~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP--NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc--HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCH
Confidence 46678888888887776665 34566677777888888888888888887776643 2222224455666667788888
Q ss_pred HHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHc
Q 007918 410 RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 443 (585)
Q Consensus 410 ~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l 443 (585)
.+|..|...+..+....++..+...+.+.+..+-
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNIIYNNFPELISSLN 111 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 8888888888888777556666665555555443
No 99
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=4.3e-05 Score=76.71 Aligned_cols=176 Identities=20% Similarity=0.198 Sum_probs=127.3
Q ss_pred hccCCcHHHHHHHHHHHHhhchhhCHH--HHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHH
Q 007918 325 LSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE 402 (585)
Q Consensus 325 ~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~ 402 (585)
.+.|+...+|..+...+..+.+...+. ...+.++......++|.++.|-.+|++.+..++...+ +.++|.+.+
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-----e~il~dL~e 809 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-----EDILPDLSE 809 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-----hhhHHHHHH
Confidence 345777778888888888887744322 2456788889999999999999999998888877643 456777766
Q ss_pred HhcC----CChHHHHHHHHHhHHHHHhhChhh--HHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhC---HHHHHhh
Q 007918 403 LAED----RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWAMQH 473 (585)
Q Consensus 403 ~~~~----~~~~~r~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~ 473 (585)
...+ .....|..+-+++..++...|+-+ +...++..++....|++..-|..++..+|.+|..+. .+++ .+
T Consensus 810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~-~e 888 (982)
T KOG4653|consen 810 EYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF-HE 888 (982)
T ss_pred HHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH-HH
Confidence 3322 223455566688888888888543 234567778888899999999999999999998654 3433 33
Q ss_pred hHHHHHhh-hcCcchHHHHHHHHHHHHhhhhcCh
Q 007918 474 ITPQVLEM-INNPHYLYRMTILRAISLLAPVMGS 506 (585)
Q Consensus 474 ll~~l~~~-l~~~~~~~R~~a~~~l~~l~~~~~~ 506 (585)
+...+... -.|....+|.+|+..+..+....|.
T Consensus 889 v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~ 922 (982)
T KOG4653|consen 889 VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGE 922 (982)
T ss_pred HHHHHHHHHccCCchhhHHHHHHHHHHHHhccch
Confidence 45555554 3567788899999988888877773
No 100
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.46 E-value=4.3e-05 Score=66.02 Aligned_cols=221 Identities=19% Similarity=0.213 Sum_probs=130.1
Q ss_pred HhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCC--ChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHH
Q 007918 324 ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 401 (585)
Q Consensus 324 ~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~ 401 (585)
+...|.+.-.+...+.+++++.. +.-+|.+...+.|. .+-||..|..+|+.+.. +.+.+.+.
T Consensus 43 ka~~d~s~llkhe~ay~LgQ~~~--------~~Av~~l~~vl~desq~pmvRhEAaealga~~~--------~~~~~~l~ 106 (289)
T KOG0567|consen 43 KAFIDDSALLKHELAYVLGQMQD--------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--------PESLEILT 106 (289)
T ss_pred Hhcccchhhhccchhhhhhhhcc--------chhhHHHHHHhcccccchHHHHHHHHHHHhhcc--------hhhHHHHH
Confidence 33344444445555555555542 33455666666554 46777777777777652 34566666
Q ss_pred HHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCc--------hHHHHHHHHHHHHHHHHhCHHHH---
Q 007918 402 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKV--------YSIRDAAANNLKRLAEEFGPEWA--- 470 (585)
Q Consensus 402 ~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~--------~~vr~~a~~~l~~l~~~~~~~~~--- 470 (585)
++.+|+-..+|.++-.++..+--.-+.... ....|+.. .||. .+.|......-..+......-|.
T Consensus 107 k~~~dp~~~v~ETc~lAi~rle~~~~~~~~-~~~~p~~S---vdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn 182 (289)
T KOG0567|consen 107 KYIKDPCKEVRETCELAIKRLEWKDIIDKI-ANSSPYIS---VDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRN 182 (289)
T ss_pred HHhcCCccccchHHHHHHHHHHHhhccccc-cccCcccc---CCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhc
Confidence 666777777777655555444211110000 00001000 1211 12222221111111111111011
Q ss_pred --HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCC--CCchHHHHHHHHHHHHHhhhchH
Q 007918 471 --MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQS 546 (585)
Q Consensus 471 --~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d--~~~~vR~~~~~~l~~l~~~~~~~ 546 (585)
.+.-+..+.+-+.+++...|..+..++|++-. +.-+|.+.+.+.| ++|-||-.|+.+||.+..
T Consensus 183 ~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s--------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----- 249 (289)
T KOG0567|consen 183 IGTEEAINALIDGLADDSALFRHEVAFVFGQLQS--------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----- 249 (289)
T ss_pred cCcHHHHHHHHHhcccchHHHHHHHHHHHhhccc--------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-----
Confidence 13456667777778888899999999988865 4456777777765 488999999999999964
Q ss_pred HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007918 547 MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 547 ~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~ 580 (585)
+..++.|++++.|+++-||..+.-++..+-.
T Consensus 250 ---e~~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 250 ---EDCVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred ---HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999987654
No 101
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.44 E-value=0.0011 Score=65.05 Aligned_cols=452 Identities=12% Similarity=0.029 Sum_probs=234.6
Q ss_pred HHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhh------hhhcccccccccCCchHHHHHHHHHHhccccccCCc--c-
Q 007918 12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERT------RKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGV--E- 82 (585)
Q Consensus 12 ~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~------~~~l~~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~- 82 (585)
..++..+-+.|+++-..|+.-....+....+... ..+++-++.+..+..++.....+..++.+.....+. +
T Consensus 12 ~~~l~~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv 91 (678)
T KOG1293|consen 12 LDLLYRLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV 91 (678)
T ss_pred HHHHHhhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence 3456667777888777777655554433322111 112222333355666677777777777665421111 1
Q ss_pred hHHhchHHHhhhhhchh-hHHHHHHHHHHHHHHhhcChhhH-----HhhHHHHHHHhhcCc-CccchhhHHhhhHhhcCC
Q 007918 83 HAHVLLPPLETLCTVEE-TCVRDKAVESLCRIGSQMRESDL-----VDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPS 155 (585)
Q Consensus 83 ~~~~l~~~l~~l~~~~~-~~vr~~a~~~l~~l~~~~~~~~~-----~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~ 155 (585)
.....++-+.+++.++| ..++++..+++..+.+..+.... ...+++.+.-+..-+ ....+ .-+..+......
T Consensus 92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~-l~~~~~a~~s~~ 170 (678)
T KOG1293|consen 92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISR-LDVSRAAHLSST 170 (678)
T ss_pred HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhh-hhhhhhcccccc
Confidence 12334555667788888 89999999999999887754221 233444444333312 11112 112222222211
Q ss_pred CChH---HHHHHHHHHHhhcCCCchHHHHHHHHhHHH---HHhhhcc-------cchHHHHHH--HHHHhccC--hhHHH
Q 007918 156 APDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGK---FAATVEP-------AHLKTDIMS--IFEDLTQD--DSVRL 218 (585)
Q Consensus 156 ~~~~---~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~---l~~~~~~-------~~~~~~l~~--~l~~l~~d--~~vr~ 218 (585)
-.++ .-..+.+-+.-+....+...|.++...+.. +...-+. ......+.+ .+.++.++ ++-|.
T Consensus 171 ~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l 250 (678)
T KOG1293|consen 171 KDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERL 250 (678)
T ss_pred chhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHH
Confidence 1111 001111222222222245678888888873 2221100 011112222 34455666 45667
Q ss_pred HHHHHHHHHhhccC-c----------hhhhhhhHH-HHHHhccCCChHHHHHHHHHHHHHHHHhCC---cccccchHHHH
Q 007918 219 LAVEGCAALGKLLE-P----------QDCVAHILP-VIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAY 283 (585)
Q Consensus 219 ~a~~~l~~l~~~~~-~----------~~~~~~~~~-~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l 283 (585)
.++.++..+...-- . +...+.+.. ....+..|+-|..-..++..+...+....+ ........+..
T Consensus 251 ~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~ 330 (678)
T KOG1293|consen 251 RSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTT 330 (678)
T ss_pred HHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhH
Confidence 77777776655321 0 000011111 123345566554444444444444433222 11111112222
Q ss_pred HHh------ccCChHHHHHHHHHHH---HHHHHhhCHH---HHHH-hhHHHHHHhccCCcHHHHHHHHHHHHhhchhhC-
Q 007918 284 VRL------LRDNEAEVRIAAAGKV---TKFCRILNPE---LAIQ-HILPCVKELSSDSSQHVRSALASVIMGMAPLLG- 349 (585)
Q Consensus 284 ~~l------l~d~~~~vr~~a~~~l---~~l~~~~~~~---~~~~-~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~- 349 (585)
.++ +....++.|.-++... ..++...+.. .+.+ .....+....-..+..++++++.++..++..+.
T Consensus 331 ~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~a 410 (678)
T KOG1293|consen 331 TELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSA 410 (678)
T ss_pred HHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 222 2233445555443322 1222221111 1111 111122222334567889999988888765442
Q ss_pred --HHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchh---HHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHH
Q 007918 350 --KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 424 (585)
Q Consensus 350 --~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~ 424 (585)
......++...+.+++.|++..|...+..++++++-.++.- .+....+..+.....+++..+|..+.+.+..+.=
T Consensus 411 L~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f 490 (678)
T KOG1293|consen 411 LRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMF 490 (678)
T ss_pred HHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 11223445555667779999999999999999999877743 2334567788889999999999999999887763
Q ss_pred hhChh----hHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Q 007918 425 QLGVG----FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 464 (585)
Q Consensus 425 ~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 464 (585)
..... ...+.-...+..+.+|++|.|.+.+...+..+...
T Consensus 491 ~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 491 NCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred cchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 32221 22222344567788999999999999999998653
No 102
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=0.00057 Score=61.04 Aligned_cols=335 Identities=15% Similarity=0.122 Sum_probs=191.9
Q ss_pred HHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChH--------HHHHHHHHHHhhcCCCch
Q 007918 106 AVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--------LKTELRSIYTQLCQDDMP 177 (585)
Q Consensus 106 a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--------~~~~l~~~l~~l~~d~~~ 177 (585)
...+|.++.+...+..+...++|-+......++..++..+|..++.+.+.++.. .-.++++++...+...+.
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 777888888877777777788999988888888899999999999999988742 236788899999999999
Q ss_pred HHHHHHHHhHHHHHhhhcc------cchHHHHHHHHHHhccC--hhHHHHHHHHHHHHhhccCch---hhhhhhHHHHHH
Q 007918 178 MVRRSAASNLGKFAATVEP------AHLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVN 246 (585)
Q Consensus 178 ~vr~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~ 246 (585)
+|-+++.+.+..++..-.. +...+.+ .+..+... +-+|....+.+..+...-+.. -...-++..+..
T Consensus 143 eVAkAAiesikrialfpaaleaiFeSellDdl--hlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLea 220 (524)
T KOG4413|consen 143 EVAKAAIESIKRIALFPAALEAIFESELLDDL--HLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEA 220 (524)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHhcccccCChH--HHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHH
Confidence 9999999999988754211 1111111 01111111 345666666666665543321 112334444444
Q ss_pred hc-cCCChHHHHHHHHHHHHHHHHh-CCcccc-cchHHHHHHhc--cCChHHHHHHHHHHHHHHHHhhCHHHHH------
Q 007918 247 FS-QDKSWRVRYMVANQLYELCEAV-GPEPTR-MDLVPAYVRLL--RDNEAEVRIAAAGKVTKFCRILNPELAI------ 315 (585)
Q Consensus 247 ~~-~d~~~~vR~~~~~~l~~l~~~~-~~~~~~-~~l~~~l~~ll--~d~~~~vr~~a~~~l~~l~~~~~~~~~~------ 315 (585)
-+ ...+.-|+..+++....++..- |.+..+ +.++..+-+.. .|.+|--.. +.+..+.+.+|.+.+.
T Consensus 221 ElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekf---ralmgfgkffgkeaimdvseea 297 (524)
T KOG4413|consen 221 ELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKF---RALMGFGKFFGKEAIMDVSEEA 297 (524)
T ss_pred HhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHH---HHHHHHHHHhcchHHhhcCHHH
Confidence 33 3477889999999988888753 223222 23454444443 233333222 2344444555543221
Q ss_pred --HhhHHH---HHHhccCCcHHHHHHHHHHHHhhchhhCHHHH-HHhHHHH---HHHhhcCCCh-HHHHHHHHHhHHhhh
Q 007918 316 --QHILPC---VKELSSDSSQHVRSALASVIMGMAPLLGKDAT-IEQLLPI---FLSLLKDEFP-DVRLNIISKLDQVNQ 385 (585)
Q Consensus 316 --~~i~~~---l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~l~~~---l~~~l~d~~~-~vr~~a~~~l~~l~~ 385 (585)
+.++-. ..+.....++....+++.+++.++........ ...=-|. +..-..|.+. .-...++.+|..++.
T Consensus 298 icealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 298 ICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAG 377 (524)
T ss_pred HHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhc
Confidence 111111 12345567788889999999999876643322 2111112 2222233332 223456666766665
Q ss_pred hhchhHHhhhHHHHHHHHhcCC--ChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHH
Q 007918 386 VIGIDLLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 463 (585)
Q Consensus 386 ~~~~~~~~~~ll~~l~~~~~~~--~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 463 (585)
.+.... +-..|. ..+.|....+. .++....+ =..++...++.+.+++|.++.+++..++.
T Consensus 378 elrlkp----------eqitDgkaeerlrclifda---aaqstkld-----PleLFlgilqQpfpEihcAalktfTAiaa 439 (524)
T KOG4413|consen 378 ELRLKP----------EQITDGKAEERLRCLIFDA---AAQSTKLD-----PLELFLGILQQPFPEIHCAALKTFTAIAA 439 (524)
T ss_pred cccCCh----------hhccccHHHHHHHHHHHHH---HhhccCCC-----hHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence 332110 011221 12233322222 22211111 13456677888999999999999988865
No 103
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.41 E-value=3.5e-06 Score=62.81 Aligned_cols=84 Identities=29% Similarity=0.425 Sum_probs=54.1
Q ss_pred HHHHHhc-cCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHH
Q 007918 320 PCVKELS-SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 398 (585)
Q Consensus 320 ~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~ 398 (585)
|.+.+.+ +|+++.+|..++.+++.+. .+...|.+..+++|+++.||..|+.+|+.+.. +..++
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~~ 65 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG--------DPEAIPALIELLKDEDPMVRRAAARALGRIGD--------PEAIP 65 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT--------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHH
Confidence 4445544 6777777777777777543 12456667777777777777777777777642 34666
Q ss_pred HHHHHhcC-CChHHHHHHHHHh
Q 007918 399 AIVELAED-RHWRVRLAIIEYI 419 (585)
Q Consensus 399 ~l~~~~~~-~~~~~r~~~~~~l 419 (585)
.+.+.+.+ +++.+|..++.++
T Consensus 66 ~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 66 ALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHhhc
Confidence 66665554 3455677776665
No 104
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.41 E-value=3.5e-05 Score=65.84 Aligned_cols=111 Identities=21% Similarity=0.201 Sum_probs=84.9
Q ss_pred ChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCch
Q 007918 369 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVY 448 (585)
Q Consensus 369 ~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~ 448 (585)
++.||.+++.+++.++...+. +.+.++|.+...+.|+++.+|..++..+..+... +.--+...++..+..++.|+++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCH
Confidence 478999999999999987753 3367889999999999999999999999988754 2222345566677778899999
Q ss_pred HHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhc
Q 007918 449 SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN 483 (585)
Q Consensus 449 ~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~ 483 (585)
+||..|..++..+....+++.+.. .+|.++..++
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i~~-~~~e~i~~l~ 111 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNIIYN-NFPELISSLN 111 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHHHH-HHHHHHHHHh
Confidence 999999999999988755554433 4444444443
No 105
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=0.00032 Score=69.48 Aligned_cols=259 Identities=17% Similarity=0.121 Sum_probs=123.4
Q ss_pred HHHHHHhhcC-CCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhc-cChhHH-HHHHHHHHHHhhccCchhhhhhh
Q 007918 164 LRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLT-QDDSVR-LLAVEGCAALGKLLEPQDCVAHI 240 (585)
Q Consensus 164 l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~-~d~~vr-~~a~~~l~~l~~~~~~~~~~~~~ 240 (585)
+.+++.+.+. .+++.||..++..+|-..-.-.. ..+...+...+ +|+.|- ++|.-+++-+.-.... ...
T Consensus 414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~----~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~----~ea 485 (929)
T KOG2062|consen 414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSAN----EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN----QEA 485 (929)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhccchhccccc----HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc----HHH
Confidence 3444443332 23566777777777654432212 22333333322 333332 3333344443322221 122
Q ss_pred HHHHHHhccC-CChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhH
Q 007918 241 LPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL 319 (585)
Q Consensus 241 ~~~l~~~~~d-~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~ 319 (585)
+.-+.....+ ...++.+...-.+.-+. +|.+ +..-+++.+++.|.|+.+|...+.+++---...|.. ..+
T Consensus 486 iedm~~Ya~ETQHeki~RGl~vGiaL~~--ygrq---e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn----kai 556 (929)
T KOG2062|consen 486 IEDMLTYAQETQHEKIIRGLAVGIALVV--YGRQ---EDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNN----KAI 556 (929)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHhHHHHH--hhhh---hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCch----hhH
Confidence 2223333333 23444444444443222 2222 234455666777777777776655544322222221 222
Q ss_pred HHHHHh-ccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCC-ChHHHHHHHHHhHHhhhhhchhHHhhhHH
Q 007918 320 PCVKEL-SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQSLL 397 (585)
Q Consensus 320 ~~l~~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~ll 397 (585)
..+... .+|.+.+||++|+-+||-++-.- +..+|....+|.++ ++.||.+++-+|+-.+...|... -+
T Consensus 557 r~lLh~aVsD~nDDVrRaAVialGFVl~~d------p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e----Ai 626 (929)
T KOG2062|consen 557 RRLLHVAVSDVNDDVRRAAVIALGFVLFRD------PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE----AI 626 (929)
T ss_pred HHhhcccccccchHHHHHHHHHheeeEecC------hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH----HH
Confidence 222222 56777777777777776654211 22334444444433 57777777777777776665432 34
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHhhChhh--HHHHHHHHHHHHccCCchH
Q 007918 398 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYS 449 (585)
Q Consensus 398 ~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~ 449 (585)
..|..+..|+..-||+.|+-++..+.-...+.. -...+...+.+.+.|....
T Consensus 627 ~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 627 NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHED 680 (929)
T ss_pred HHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhH
Confidence 445556667777777777776665554332211 0122334444455555444
No 106
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.004 Score=62.90 Aligned_cols=360 Identities=14% Similarity=0.118 Sum_probs=193.2
Q ss_pred hHHHHHHHhhhHHHHHHh-hCh---------hhhhhhccccccc-ccCCchHHHHHHHHHHhccccccCCcchHHhchHH
Q 007918 22 DIQLRLNSIRRLSTIARA-LGE---------ERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP 90 (585)
Q Consensus 22 ~~~~R~~a~~~l~~~~~~-~~~---------~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 90 (585)
|...|..|.-.+..-.+. -++ +..+..+...+.. .......++....++++-++++ .=|+.++.++|-
T Consensus 52 d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~-DFP~kWptLl~d 130 (960)
T KOG1992|consen 52 DPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKR-DFPDKWPTLLPD 130 (960)
T ss_pred ChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcc-ccchhhHHHHHH
Confidence 899999999888877662 111 1111112222222 2344467788888888777653 225678889998
Q ss_pred HhhhhhchhhHHHHHHHHHHHHHHhhcCh----hhHHhh-----------HHHHHH---Hhhc--CcCc-------cchh
Q 007918 91 LETLCTVEETCVRDKAVESLCRIGSQMRE----SDLVDW-----------YIPLVK---RLAA--GEWF-------TARV 143 (585)
Q Consensus 91 l~~l~~~~~~~vr~~a~~~l~~l~~~~~~----~~~~~~-----------l~~~l~---~l~~--~~~~-------~~r~ 143 (585)
+..-++..|-.+-......-..+.+...+ +.++.. +..++. .+.+ +.+. .+-.
T Consensus 131 L~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vll 210 (960)
T KOG1992|consen 131 LVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLL 210 (960)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Confidence 88877777766655555555556666554 222211 111111 1221 1111 1111
Q ss_pred hHHhhhHhh-cCCCCh---HHHHHHHHHHHhhcCCCc-------------hHHHHHHHHhHHHHHhhhccc--chHHHHH
Q 007918 144 SACGLFHIA-YPSAPD---ILKTELRSIYTQLCQDDM-------------PMVRRSAASNLGKFAATVEPA--HLKTDIM 204 (585)
Q Consensus 144 ~a~~~l~~~-~~~~~~---~~~~~l~~~l~~l~~d~~-------------~~vr~~a~~~l~~l~~~~~~~--~~~~~l~ 204 (585)
..|.++..+ +...++ .+.++.++.+.+++.-++ ..+|...|+.+.-+.....++ .+.+++.
T Consensus 211 l~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv 290 (960)
T KOG1992|consen 211 LICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFV 290 (960)
T ss_pred HHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHH
Confidence 222222222 233343 467888888888876222 246667777776666655321 1222222
Q ss_pred H----HHHHhccC---hhHHHHHHHHHHHHhhccCc------h-----------------------hhhhhhHHHHHHhc
Q 007918 205 S----IFEDLTQD---DSVRLLAVEGCAALGKLLEP------Q-----------------------DCVAHILPVIVNFS 248 (585)
Q Consensus 205 ~----~l~~l~~d---~~vr~~a~~~l~~l~~~~~~------~-----------------------~~~~~~~~~l~~~~ 248 (585)
. ++.....+ |.....|.+.|..+++.-.. + .+.+.-+.++.+.+
T Consensus 291 ~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDl 370 (960)
T KOG1992|consen 291 TATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDL 370 (960)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhc
Confidence 2 33333334 55666777777777653221 1 11122333444444
Q ss_pred cCCChH-HHHHHHHHHHHHHHHhCCcccccchHHHHHH----hccC--ChHHHHHHHHHHHHHHHHhhC-----------
Q 007918 249 QDKSWR-VRYMVANQLYELCEAVGPEPTRMDLVPAYVR----LLRD--NEAEVRIAAAGKVTKFCRILN----------- 310 (585)
Q Consensus 249 ~d~~~~-vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~----ll~d--~~~~vr~~a~~~l~~l~~~~~----------- 310 (585)
+-++.. -|+.++..+..+++.+....+ .-+-..+.. ..++ .+|.-...++.....++..-+
T Consensus 371 EGsDvdTRRR~a~dlvrgL~~~fe~~vt-~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~ 449 (960)
T KOG1992|consen 371 EGSDVDTRRRAAIDLVRGLCKNFEGQVT-GVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNE 449 (960)
T ss_pred ccCCcchhHHHHHHHHHHHHHHhcchhH-HHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccc
Confidence 433333 377889999999988754332 112222222 2333 347767777776666654321
Q ss_pred ----HHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhh
Q 007918 311 ----PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 384 (585)
Q Consensus 311 ----~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 384 (585)
.+.+...+.|.+..--....+-++..+++.+..+=...|++..+ .++|.+...++.++.-|..-|+.++..+.
T Consensus 450 lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm-~~~p~li~~L~a~s~vvhsYAA~aiEkil 526 (960)
T KOG1992|consen 450 LVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLM-ALLPRLIRFLEAESRVVHSYAAIAIEKLL 526 (960)
T ss_pred cccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHH-HHHHHHHHhccCcchHHHHHHHHHHHhcc
Confidence 12334455555544333556777777777776666666665544 45677777777776777766666666654
No 107
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.37 E-value=0.0013 Score=67.74 Aligned_cols=380 Identities=15% Similarity=0.142 Sum_probs=217.8
Q ss_pred HHhhcCCCchHHHHHHHHhHHHHHhhhccc--chHHHHHHHHHHhccC--hhHHHHHHHHHHHHhhccCc--hhhhhhhH
Q 007918 168 YTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEP--QDCVAHIL 241 (585)
Q Consensus 168 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~--~~~~~~~~ 241 (585)
+..++..++.-.| .+...|.+++.....+ -....+++.+.++++. .++...++..+.++.-.-.. .-....++
T Consensus 255 ~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV 333 (708)
T PF05804_consen 255 LQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIV 333 (708)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCH
Confidence 3444444444444 4556677777654221 1223345555555544 55777777777777643221 22345688
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHHHHhC--CcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHH--HHHHh
Q 007918 242 PVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQH 317 (585)
Q Consensus 242 ~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ 317 (585)
+.+.+++..++..++..+++.|..++..-. .......++|.+..++.|++ .+..++..|..++..-... .....
T Consensus 334 ~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~Td 411 (708)
T PF05804_consen 334 EKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTD 411 (708)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcc
Confidence 889999999999999999999998874321 13334578999999998764 5556777777765421111 11134
Q ss_pred hHHHHHHh-ccCCcHHHHHHHHHHHHhhchhhCHHHH--HHhHHHHH-HHhhcCCChHHHHHHHHHhHHhhhhhchh--H
Q 007918 318 ILPCVKEL-SSDSSQHVRSALASVIMGMAPLLGKDAT--IEQLLPIF-LSLLKDEFPDVRLNIISKLDQVNQVIGID--L 391 (585)
Q Consensus 318 i~~~l~~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~~~l-~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~ 391 (585)
.+|.+.++ +..++.++...++..+.+++..-..... ...-++.+ ...++..++ ..+..+.+++.+-|+. .
T Consensus 412 cIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~k~~ 487 (708)
T PF05804_consen 412 CIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPLKEL 487 (708)
T ss_pred hHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchHHHH
Confidence 56666554 4446666666666666666543322111 11222333 233333332 2234455555554322 1
Q ss_pred HhhhHHHHHHHHhcC-CChHHHHHHHHHhHHHHHhhCh----h-hHH-HHHHHHHHHHccCC--chHHHHHHHHHHHHHH
Q 007918 392 LSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGV----G-FFD-DKLGALCMQWLQDK--VYSIRDAAANNLKRLA 462 (585)
Q Consensus 392 ~~~~ll~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~----~-~~~-~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~ 462 (585)
+.+ ++..+...+.. +++ ...+++++.++...-+ . .+. -.++|.+.+.+..+ ...+...++..+|.++
T Consensus 488 f~~-~i~~L~~~v~~~~~e---e~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla 563 (708)
T PF05804_consen 488 FVD-FIGDLAKIVSSGDSE---EFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA 563 (708)
T ss_pred HHH-HHHHHHHHhhcCCcH---HHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH
Confidence 222 33333344443 333 3455666666553211 1 122 25788888888644 3467788888888877
Q ss_pred HHhCHH--HHHhhhHHHHHhhhcCc--chHHHHHHHHHHHHhhhhcCh-HHH--HhcHHHHHHhhcCCCCchHHHHHHHH
Q 007918 463 EEFGPE--WAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGS-EIT--CSRLLPVVINASKDRVPNIKFNVAKV 535 (585)
Q Consensus 463 ~~~~~~--~~~~~ll~~l~~~l~~~--~~~~R~~a~~~l~~l~~~~~~-~~~--~~~i~~~l~~~l~d~~~~vR~~~~~~ 535 (585)
..-... .....+++.+.++++.. +...-...+.++..+..+-.. +.. ...+...++.++.|+++.||..|-.+
T Consensus 564 ~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~ 643 (708)
T PF05804_consen 564 SDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNA 643 (708)
T ss_pred CCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHH
Confidence 532211 12357888888887654 344555666666666653211 111 25677899999999999999999998
Q ss_pred HHHHHhhhch-------H---HHHhhHHHHHHH
Q 007918 536 LQSLIPIVDQ-------S---MVEKTIRPCLVE 558 (585)
Q Consensus 536 l~~l~~~~~~-------~---~~~~~~~~~l~~ 558 (585)
|..+...-.. . .+..++++.+..
T Consensus 644 Ldii~e~d~~w~~ri~~~kF~~hN~~WLe~v~~ 676 (708)
T PF05804_consen 644 LDIIAEYDEEWAERIRREKFRWHNAQWLEMVES 676 (708)
T ss_pred HHHHHHhCHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 8888765321 1 344567777654
No 108
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.36 E-value=0.00011 Score=72.52 Aligned_cols=284 Identities=14% Similarity=0.136 Sum_probs=114.4
Q ss_pred ChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcH
Q 007918 252 SWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQ 331 (585)
Q Consensus 252 ~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~ 331 (585)
+..++..+++.+..+.+.+++- .+..+..++.+++|+|..||..|++.|..+|+.- ..+...+...|.+++...++
T Consensus 35 ~~k~K~Laaq~I~kffk~FP~l--~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~--~~~v~kvaDvL~QlL~tdd~ 110 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFPDL--QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN--PEHVSKVADVLVQLLQTDDP 110 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-GGG--HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT---H
T ss_pred CHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH--HHHHhHHHHHHHHHHhcccH
Confidence 4556666666666665554432 2345666666666666667777777766666642 22335556666666665555
Q ss_pred HHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchh------HHhhhHHHHHHHHhc
Q 007918 332 HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID------LLSQSLLPAIVELAE 405 (585)
Q Consensus 332 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------~~~~~ll~~l~~~~~ 405 (585)
.....+-.++..+...-+. .+...++..+..- ...++.+|..++..|..-...++.+ ...+.+...+.+.+.
T Consensus 111 ~E~~~v~~sL~~ll~~d~k-~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~ 188 (556)
T PF05918_consen 111 VELDAVKNSLMSLLKQDPK-GTLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQ 188 (556)
T ss_dssp HHHHHHHHHHHHHHHH-HH-HHHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHH
Confidence 5555555555444432221 1112222211110 1234566777666665444333322 222345555556666
Q ss_pred CCChHHHHHHHHHhHHHHHh--hChhhHHHHHHHHHHHHcc-C-----CchHHHHHHHHHHH----HHHHHhCHHHHHhh
Q 007918 406 DRHWRVRLAIIEYIPLLASQ--LGVGFFDDKLGALCMQWLQ-D-----KVYSIRDAAANNLK----RLAEEFGPEWAMQH 473 (585)
Q Consensus 406 ~~~~~~r~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~~l~-d-----~~~~vr~~a~~~l~----~l~~~~~~~~~~~~ 473 (585)
|-...-=...+..+..+--. .....-...+++++..... | .+.+.-...+.++. .+........|...
T Consensus 189 DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y 268 (556)
T PF05918_consen 189 DVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNY 268 (556)
T ss_dssp T--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHH
T ss_pred hccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHH
Confidence 53221111222222221110 0111122345555554321 1 11222222222222 22221111222222
Q ss_pred hHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcC------CCCchHHHHHHHHHHHHHhh
Q 007918 474 ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK------DRVPNIKFNVAKVLQSLIPI 542 (585)
Q Consensus 474 ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~------d~~~~vR~~~~~~l~~l~~~ 542 (585)
+...++..+.+-....|...+..+..++.+++... ...++|.+...+. +..++....-++++......
T Consensus 269 ~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~ 342 (556)
T PF05918_consen 269 MCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQ 342 (556)
T ss_dssp HHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHTTS----------HHHHHHHHHHHHH
T ss_pred HHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHH
Confidence 22222223333355678889999999999888654 3444455444442 23555666666666544433
No 109
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.36 E-value=0.003 Score=62.17 Aligned_cols=135 Identities=17% Similarity=0.157 Sum_probs=99.9
Q ss_pred cCCchHHHHHHHHHHHHHHHH---hCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcCh---HHHHhcHHHHH
Q 007918 444 QDKVYSIRDAAANNLKRLAEE---FGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVV 517 (585)
Q Consensus 444 ~d~~~~vr~~a~~~l~~l~~~---~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~---~~~~~~i~~~l 517 (585)
.-.+..++.+|+.++..+... +..+.-...+...+++++.||+..+..+++.++.++.-.+++ .+.....+..+
T Consensus 387 ~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l 466 (678)
T KOG1293|consen 387 PIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDIL 466 (678)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHH
Confidence 345678889999888777653 222222355777788888999999999999999999876664 33467888999
Q ss_pred HhhcCCCCchHHHHHHHHHHHHHhhhchH---HHHhh-HHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007918 518 INASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKT-IRPCLVELTEDPDVDVRFFATQAIQSI 578 (585)
Q Consensus 518 ~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~-~~~~l~~l~~D~~~~Vr~~a~~al~~l 578 (585)
.+++.++++++|..+.+.|.++.-..... ..... -...+..+.+|+|+.|+.-+.+.+..+
T Consensus 467 ~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 467 ESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999986554332 12222 334555688999999988777666543
No 110
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.34 E-value=4.8e-06 Score=66.49 Aligned_cols=106 Identities=16% Similarity=0.074 Sum_probs=73.6
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHHHHHHh---CHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChH--H-
Q 007918 435 LGALCMQWLQDKVYSIRDAAANNLKRLAEEF---GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--I- 508 (585)
Q Consensus 435 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~--~- 508 (585)
+++.+..++.+.++.+|..++.+++.++... ........++|.+.+++.+++..+|..++.++++++...+.. .
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 5667777777778888888888888887532 112233477778888888878888888888888887644321 1
Q ss_pred HHhcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 007918 509 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 540 (585)
Q Consensus 509 ~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~ 540 (585)
....+++.+...+++.+..+|..++.++..++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 22346777777777777778887777777664
No 111
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.34 E-value=3.4e-06 Score=67.35 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=89.8
Q ss_pred HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcC---hHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH-
Q 007918 471 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS- 546 (585)
Q Consensus 471 ~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~---~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~- 546 (585)
...+++.+.+++.++++.+|..++.++++++.... .......++|.+.++++|+++.+|..++.+++.+....+..
T Consensus 5 ~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~ 84 (120)
T cd00020 5 QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNK 84 (120)
T ss_pred HcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHH
Confidence 34578899999999999999999999999987532 22234488999999999999999999999999998764322
Q ss_pred --HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007918 547 --MVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 579 (585)
Q Consensus 547 --~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~ 579 (585)
.....+++.+.+++.+.+.++|..+..++..++
T Consensus 85 ~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 85 LIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 233458899999999999999999999998875
No 112
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.31 E-value=5.3e-05 Score=65.50 Aligned_cols=235 Identities=18% Similarity=0.155 Sum_probs=151.6
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCCh--HHHHHHHHHHHHHHHHhhCHHHHHHhh
Q 007918 241 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE--AEVRIAAAGKVTKFCRILNPELAIQHI 318 (585)
Q Consensus 241 ~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~i 318 (585)
+..+.+...|++...+...+-+++++.. .+-+|.+...+.|.+ +.||..+.++|+.+.. +..
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~--------~~Av~~l~~vl~desq~pmvRhEAaealga~~~--------~~~ 101 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQD--------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--------PES 101 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhcc--------chhhHHHHHHhcccccchHHHHHHHHHHHhhcc--------hhh
Confidence 4455566667677777777777776542 356778888777654 7899999999998862 445
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHH
Q 007918 319 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 398 (585)
Q Consensus 319 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~ 398 (585)
.+++.+..+|+...||.++..++..+-..-+.... ....|+.. .|+.+. ... .-++
T Consensus 102 ~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~-~~~~p~~S---vdPa~p---~~~-----------------ssv~ 157 (289)
T KOG0567|consen 102 LEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKI-ANSSPYIS---VDPAPP---ANL-----------------SSVH 157 (289)
T ss_pred HHHHHHHhcCCccccchHHHHHHHHHHHhhccccc-cccCcccc---CCCCCc---ccc-----------------ccHH
Confidence 67777778888889998877777665332111000 00111111 222221 001 1122
Q ss_pred HHHHHhcCCC--hHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHH
Q 007918 399 AIVELAEDRH--WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP 476 (585)
Q Consensus 399 ~l~~~~~~~~--~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~ 476 (585)
.+...+.|.+ ---|..++..+..+ |.+ .-+-.+.+.+.+++.-.|..+.-++|++-. +.-+|
T Consensus 158 ~lr~~lld~t~~l~~Ry~amF~LRn~----g~E----eaI~al~~~l~~~SalfrhEvAfVfGQl~s--------~~ai~ 221 (289)
T KOG0567|consen 158 ELRAELLDETKPLFERYRAMFYLRNI----GTE----EAINALIDGLADDSALFRHEVAFVFGQLQS--------PAAIP 221 (289)
T ss_pred HHHHHHHhcchhHHHHHhhhhHhhcc----CcH----HHHHHHHHhcccchHHHHHHHHHHHhhccc--------hhhhH
Confidence 2223232322 11344555555432 332 234556667788888899999999988743 34577
Q ss_pred HHHhhhcCc--chHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHH
Q 007918 477 QVLEMINNP--HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 539 (585)
Q Consensus 477 ~l~~~l~~~--~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l 539 (585)
.+.+.+.|. +.-+|.-|+++|+.++. +..++.|.++++|+.+-||..|..++...
T Consensus 222 ~L~k~L~d~~E~pMVRhEaAeALGaIa~--------e~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 222 SLIKVLLDETEHPMVRHEAAEALGAIAD--------EDCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred HHHHHHHhhhcchHHHHHHHHHHHhhcC--------HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 777777654 57899999999999987 77889999999999999999998888765
No 113
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=98.29 E-value=0.0026 Score=62.98 Aligned_cols=293 Identities=14% Similarity=0.146 Sum_probs=151.6
Q ss_pred HHHHHHHhccChhHHHHHHHHHHHHhhccCchhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHH
Q 007918 203 IMSIFEDLTQDDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA 282 (585)
Q Consensus 203 l~~~l~~l~~d~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~ 282 (585)
...++...-.++..+..|.+.++.+...+|. ..+..+..+.++|.|++..||..+++.|..+|+.-++ ....+..+
T Consensus 25 y~~il~~~kg~~k~K~Laaq~I~kffk~FP~--l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~--~v~kvaDv 100 (556)
T PF05918_consen 25 YKEILDGVKGSPKEKRLAAQFIPKFFKHFPD--LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE--HVSKVADV 100 (556)
T ss_dssp HHHHHHGGGS-HHHHHHHHHHHHHHHCC-GG--GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T---HHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH--HHhHHHHH
Confidence 3333443333477888999999999888875 3566788889999999999999999999999875322 23468888
Q ss_pred HHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhc--cCCcHHHHHHHHHHHHhhchhhC------HHHHH
Q 007918 283 YVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS--SDSSQHVRSALASVIMGMAPLLG------KDATI 354 (585)
Q Consensus 283 l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~--~d~~~~vr~~a~~~l~~l~~~~~------~~~~~ 354 (585)
+.+++..+++..+..+-++|..+.+.-+.. .+-..+..+. ...+..+|..++..|..-...++ .+...
T Consensus 101 L~QlL~tdd~~E~~~v~~sL~~ll~~d~k~----tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e 176 (556)
T PF05918_consen 101 LVQLLQTDDPVELDAVKNSLMSLLKQDPKG----TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEME 176 (556)
T ss_dssp HHHHTT---HHHHHHHHHHHHHHHHH-HHH----HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHH
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhcCcHH----HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHH
Confidence 999998888777777778887777652222 1222222222 24567789988887755332222 14455
Q ss_pred HhHHHHHHHhhcCCChHHHHHHHHHhHHhhh---hhchhHHhhhHHHHHHHHhc-C-----CChHHHHHHHHHhHH----
Q 007918 355 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ---VIGIDLLSQSLLPAIVELAE-D-----RHWRVRLAIIEYIPL---- 421 (585)
Q Consensus 355 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~---~~~~~~~~~~ll~~l~~~~~-~-----~~~~~r~~~~~~l~~---- 421 (585)
+.+...+.+.|.|-..+=-......|..+-. .-.... .+.+++.+.+... | .+...-...+.++..
T Consensus 177 ~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g-~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~ 255 (556)
T PF05918_consen 177 EFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEG-RQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPF 255 (556)
T ss_dssp HHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHH-HHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHH-HHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHH
Confidence 6777888888888432222222233333222 111112 2446666654331 1 122211122222222
Q ss_pred HHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhc--------Cc--chHHHH
Q 007918 422 LASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN--------NP--HYLYRM 491 (585)
Q Consensus 422 l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~--------~~--~~~~R~ 491 (585)
+........|...+..-++.-+.+-....|...+++++.++...+... ...++|.+.+.+. .+ ++..-+
T Consensus 256 fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vE 334 (556)
T PF05918_consen 256 FSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVE 334 (556)
T ss_dssp -BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHTTS----------HHHHH
T ss_pred hcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHhCCCCCCCCcccchHhh
Confidence 222222222333333333333444455677788888988888777543 3445555544432 11 345666
Q ss_pred HHHHHHHHhhhhcC
Q 007918 492 TILRAISLLAPVMG 505 (585)
Q Consensus 492 ~a~~~l~~l~~~~~ 505 (585)
+.+.++..++...+
T Consensus 335 cLL~afh~La~k~p 348 (556)
T PF05918_consen 335 CLLYAFHQLARKSP 348 (556)
T ss_dssp HHHHHHHHHHTT-T
T ss_pred HHHHHHHHHhhhCc
Confidence 66767777765433
No 114
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=98.28 E-value=0.00087 Score=67.45 Aligned_cols=406 Identities=14% Similarity=0.071 Sum_probs=222.0
Q ss_pred chHHHhhhhhchhhHHHHHHHHHHHHHHhhcCh-hhHHhhHHHHHHHhhcCc-CccchhhHHhhhHhhcCCCChHHHHHH
Q 007918 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRE-SDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDILKTEL 164 (585)
Q Consensus 87 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~~~~~l 164 (585)
+.|+|.++ .+++..||...++.+..+.+.+.. ..+.=-+..++..+.+.+ +..+|..+..-+..-+++++.+.+.++
T Consensus 25 L~plLlkl-~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~e~~~l 103 (501)
T PF13001_consen 25 LPPLLLKL-ASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDEERREL 103 (501)
T ss_pred HHHHHHHh-cCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 44444444 578899999999999999887765 333323444555555555 577888888888888999999999999
Q ss_pred HHHHHhhcCCCch---HHHHHHHHhHHHHHhhhccc-----chHHHHHHHHHHhccChhHHHHHHHHHHHHh-------h
Q 007918 165 RSIYTQLCQDDMP---MVRRSAASNLGKFAATVEPA-----HLKTDIMSIFEDLTQDDSVRLLAVEGCAALG-------K 229 (585)
Q Consensus 165 ~~~l~~l~~d~~~---~vr~~a~~~l~~l~~~~~~~-----~~~~~l~~~l~~l~~d~~vr~~a~~~l~~l~-------~ 229 (585)
+|.+.+.+..... ......+..+.-+++..... ......-+.-.....+.............+. .
T Consensus 104 lP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~l~~~~~~ 183 (501)
T PF13001_consen 104 LPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFRDSLGLSDFCDDVFLAPWFSKFLLLQPNRAY 183 (501)
T ss_pred HHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHHHHHhhcchHHHHHcchhhcccccccccccc
Confidence 9999988874321 12222222222222221110 0000000000000001000000000011110 0
Q ss_pred ccCc-hhhhhhhHHH--HHHhccC--------CChHHHHHHHHHHHHHHHHhCCccc-ccchHHHHHHhccCChHHHHHH
Q 007918 230 LLEP-QDCVAHILPV--IVNFSQD--------KSWRVRYMVANQLYELCEAVGPEPT-RMDLVPAYVRLLRDNEAEVRIA 297 (585)
Q Consensus 230 ~~~~-~~~~~~~~~~--l~~~~~d--------~~~~vR~~~~~~l~~l~~~~~~~~~-~~~l~~~l~~ll~d~~~~vr~~ 297 (585)
..+. .......+.. ....... .-.++|...++.+.. ... ....++.++-...|++.+|...
T Consensus 184 ~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~s-------g~f~d~~~~~~~liAsad~~~~V~~~ 256 (501)
T PF13001_consen 184 ACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLAS-------GFFPDEERFPPLLIASADSNSSVSDR 256 (501)
T ss_pred CCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHh-------cCCCcHhHHhheeeEEeCCcchHHHH
Confidence 0000 0000000000 1111111 112344444444432 222 2245556666667888889988
Q ss_pred HHHHHHHHHHhhCHHHHHHhhHHHHH--Hhcc-----CCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCC--
Q 007918 298 AAGKVTKFCRILNPELAIQHILPCVK--ELSS-----DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE-- 368 (585)
Q Consensus 298 a~~~l~~l~~~~~~~~~~~~i~~~l~--~~~~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-- 368 (585)
+-..|..+...+....+.+.++..+. .... -.++.+|......+..=.. .....+.+..++...+...
T Consensus 257 ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~---Aa~~~~~~~~i~~~~l~~~~~ 333 (501)
T PF13001_consen 257 AEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI---AATSFPNILQIVFDGLYSDNT 333 (501)
T ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH---HHhCCccHHHHHhccccCCcc
Confidence 88888887766666555555555554 2111 2346777777666655211 1122345666677777766
Q ss_pred ChHHHHHHHHHh---HHhhhhhchhHHhhhHHHHHH----HHhc--------CCChHHHHHHHHHhHHHHHhhChhhH-H
Q 007918 369 FPDVRLNIISKL---DQVNQVIGIDLLSQSLLPAIV----ELAE--------DRHWRVRLAIIEYIPLLASQLGVGFF-D 432 (585)
Q Consensus 369 ~~~vr~~a~~~l---~~l~~~~~~~~~~~~ll~~l~----~~~~--------~~~~~~r~~~~~~l~~l~~~~~~~~~-~ 432 (585)
+..+|..+++-+ .......+...+ +.+-|.+. ..+. ..+...|..+.++++.+++....-+. .
T Consensus 334 ~~klk~~~l~F~~~~~~~~~~~~~~~l-~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d 412 (501)
T PF13001_consen 334 NSKLKSLALQFIRGSSWIFKHISPQIL-KLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKD 412 (501)
T ss_pred ccccchhcchhhhcchHHhhhcCHHHH-HHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccccccc
Confidence 667787888888 666666665433 22333332 2332 24567999999999999987654331 2
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHH-----HhhhHHHHH-hhhcCcchHHHHHHHHHHHHhhhhc
Q 007918 433 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA-----MQHITPQVL-EMINNPHYLYRMTILRAISLLAPVM 504 (585)
Q Consensus 433 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~ll~~l~-~~l~~~~~~~R~~a~~~l~~l~~~~ 504 (585)
-.++..+++.+.++..++|.+.-++|..+...+....- ....+..+. ....+....+|.+|+.+...+.+.-
T Consensus 413 ~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~fpf~ 490 (501)
T PF13001_consen 413 LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANACFPFS 490 (501)
T ss_pred HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCCcc
Confidence 34667777777999999999999999999887654211 111222222 2234556778889988888776643
No 115
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.26 E-value=0.0078 Score=61.60 Aligned_cols=304 Identities=13% Similarity=0.117 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHHHHHHhCCcccccchHHHHHH---------hccCC-hHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHH
Q 007918 254 RVRYMVANQLYELCEAVGPEPTRMDLVPAYVR---------LLRDN-EAEVRIAAAGKVTKFCRILNPELAIQHILPCVK 323 (585)
Q Consensus 254 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~---------ll~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~ 323 (585)
.+|..+...+-.+...+|..... .+....-+ .+... .|.+..+.+.....+...-..+.....+...+.
T Consensus 377 ~~~~~~rd~~~~v~~~f~~~~i~-~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~~~dd~l~~l~~~~~ 455 (1005)
T KOG2274|consen 377 TARISVRDLLLEVITTFGNEGIN-PIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDDANDDKLIELTIMID 455 (1005)
T ss_pred hhhhhHHHHHHHHHHhccchhhh-HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCcchHHHHHHHHHHHH
Confidence 46666666666666666543221 11111000 11222 244454444444433321112222233333333
Q ss_pred Hhcc-CCcHHHHHHHHHHHHhhchhh--CHHHHHHhHHH-HHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHH
Q 007918 324 ELSS-DSSQHVRSALASVIMGMAPLL--GKDATIEQLLP-IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 399 (585)
Q Consensus 324 ~~~~-d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~l~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~ 399 (585)
..+. ...|..-..+...++.++... .+... ..++. .+..+..|..+.+|..|+.+++..++.-....+.+.++..
T Consensus 456 ~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 456 NGLVYQESPFLLLRAFLTISKFSSSTVINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDG 534 (1005)
T ss_pred hhcccccCHHHHHHHHHHHHHHHhhhccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHH
Confidence 3332 344544446666666666552 22222 33333 3334456777889999999988887432222344667777
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHHhhCh--hhHHHHHHHHHHHHc--cCCchHHHHHHHHHHHHHHHH---hCHHHHHh
Q 007918 400 IVELAEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWL--QDKVYSIRDAAANNLKRLAEE---FGPEWAMQ 472 (585)
Q Consensus 400 l~~~~~~~~~~~r~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~---~~~~~~~~ 472 (585)
+.++..+.+..+-...++++..+.+.-.. ......+.|.+..++ ...++.|-..+-.++..++.. .|+ ..+
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~--m~e 612 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGP--MQE 612 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcc--hHH
Confidence 77787877888888888888877764221 112345666655543 123346777777777766653 333 467
Q ss_pred hhHHHHHhhhcCcc----hHHHHHHHHHHHHhhhhcChH---HHHhcHHHHHHhhc-CCCCchHHHHHHHHHHHHHhhhc
Q 007918 473 HITPQVLEMINNPH----YLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVD 544 (585)
Q Consensus 473 ~ll~~l~~~l~~~~----~~~R~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~l-~d~~~~vR~~~~~~l~~l~~~~~ 544 (585)
..+|.+++.+.-++ ......++..+..+.++-++. .+.....|.+.++. ...+..+-+++-++|..++....
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 89999998876655 567778888888887765432 24566667666654 44566677777777777665522
Q ss_pred hH---------HHHhhHHHHHHHhcC
Q 007918 545 QS---------MVEKTIRPCLVELTE 561 (585)
Q Consensus 545 ~~---------~~~~~~~~~l~~l~~ 561 (585)
++ .....++.++.+|++
T Consensus 693 eq~~t~~~e~g~~~~yImqV~sqLLd 718 (1005)
T KOG2274|consen 693 EQLLTWHDEPGHNLWYIMQVLSQLLD 718 (1005)
T ss_pred HHHHhhccCCCccHHHHHHHHHHHcC
Confidence 11 223478888888764
No 116
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=0.0024 Score=57.24 Aligned_cols=320 Identities=13% Similarity=0.143 Sum_probs=171.6
Q ss_pred HHHHHHHHhhccCchhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCccc-------ccchHHHHHHhccCChH
Q 007918 220 AVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-------RMDLVPAYVRLLRDNEA 292 (585)
Q Consensus 220 a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~-------~~~l~~~l~~ll~d~~~ 292 (585)
++.++..+.+...+....+.++|.+..-+..++..|+..++..++.+.+......+ ...+++.+......++.
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd 142 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD 142 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence 44555555554444444555666666666666666777777777666655443211 34678888888888899
Q ss_pred HHHHHHHHHHHHHHHhhCHH--HHHHhhHHH--HHHhccCCcHHHHHHHHHHHHhhchhhC---HHHHHHhHHHHHHHhh
Q 007918 293 EVRIAAAGKVTKFCRILNPE--LAIQHILPC--VKELSSDSSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLL 365 (585)
Q Consensus 293 ~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~--l~~~~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l 365 (585)
+|.+++.+.+..++..-..- .+-..+... +.++....+.-+|....+.+-.+....+ .+....-++..+..-+
T Consensus 143 eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaEl 222 (524)
T KOG4413|consen 143 EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAEL 222 (524)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHh
Confidence 99999999999887541110 000011111 1112222333455555555555433322 1222334555555444
Q ss_pred cC-CChHHHHHHHHHhHHhhhhhc-hhH-HhhhHHHHHHHHhc--CCChHHHHHHHHHhHHHHHhhChhhHHH-------
Q 007918 366 KD-EFPDVRLNIISKLDQVNQVIG-IDL-LSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFDD------- 433 (585)
Q Consensus 366 ~d-~~~~vr~~a~~~l~~l~~~~~-~~~-~~~~ll~~l~~~~~--~~~~~~r~~~~~~l~~l~~~~~~~~~~~------- 433 (585)
+. .+.-|+.++++....+...-. .+. -.+.++..+.+++. |.++--+..++..+ .+.+|+..+.+
T Consensus 223 kGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgf---gkffgkeaimdvseeaic 299 (524)
T KOG4413|consen 223 KGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGF---GKFFGKEAIMDVSEEAIC 299 (524)
T ss_pred cCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHH---HHHhcchHHhhcCHHHHH
Confidence 43 556788888888777765432 221 12455666666542 44443333333333 33344332221
Q ss_pred -HH---HHHHHHHccCCchHHHHHHHHHHHHHHHHhCH-HHHH---hhhHHHHHhhhcCcc-hHHHHHHHHHHHHhhhhc
Q 007918 434 -KL---GALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-EWAM---QHITPQVLEMINNPH-YLYRMTILRAISLLAPVM 504 (585)
Q Consensus 434 -~l---~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~---~~ll~~l~~~l~~~~-~~~R~~a~~~l~~l~~~~ 504 (585)
.+ +.-.+..+...++....+|+.++|.+...... +... ..-...++....|.+ ..-...++.++.+|+...
T Consensus 300 ealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagel 379 (524)
T KOG4413|consen 300 EALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGEL 379 (524)
T ss_pred HHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccc
Confidence 11 12233445566777889999999999765433 2211 112223333333433 445667777777776422
Q ss_pred --ChHH---------HH----------hcH--HHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 007918 505 --GSEI---------TC----------SRL--LPVVINASKDRVPNIKFNVAKVLQSLIPI 542 (585)
Q Consensus 505 --~~~~---------~~----------~~i--~~~l~~~l~d~~~~vR~~~~~~l~~l~~~ 542 (585)
.++. .. .++ +..+...++.+.|++|-++.+.+..++..
T Consensus 380 rlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq 440 (524)
T KOG4413|consen 380 RLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ 440 (524)
T ss_pred cCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC
Confidence 1110 00 111 22455567788999999999999888644
No 117
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.21 E-value=0.00048 Score=67.99 Aligned_cols=224 Identities=18% Similarity=0.141 Sum_probs=123.6
Q ss_pred HHHHHHhHHHHHhhhcccchHH-HHHHHHHHhccC-----hhHHHHHHHHHHHHhhccC--chhhhhhhHHHHHHhccCC
Q 007918 180 RRSAASNLGKFAATVEPAHLKT-DIMSIFEDLTQD-----DSVRLLAVEGCAALGKLLE--PQDCVAHILPVIVNFSQDK 251 (585)
Q Consensus 180 r~~a~~~l~~l~~~~~~~~~~~-~l~~~l~~l~~d-----~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~~~d~ 251 (585)
-....+.+.+|...++...... .+-+++..++.. ..||...++.+..+..... ++...+.+...+..-+.|.
T Consensus 59 ~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dr 138 (892)
T KOG2025|consen 59 PDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDR 138 (892)
T ss_pred HHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhcc
Confidence 3344555555555554322222 223333443332 3488888888777776332 2344444555555566778
Q ss_pred ChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhc-cCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCc
Q 007918 252 SWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 330 (585)
Q Consensus 252 ~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~ 330 (585)
.+.||..|+.+|..+-..-+++ ...+...+..++ .|++++||++++..+..- +...|++.....|-+
T Consensus 139 ep~VRiqAv~aLsrlQ~d~~de--e~~v~n~l~~liqnDpS~EVRRaaLsnI~vd----------nsTlp~IveRarDV~ 206 (892)
T KOG2025|consen 139 EPNVRIQAVLALSRLQGDPKDE--ECPVVNLLKDLIQNDPSDEVRRAALSNISVD----------NSTLPCIVERARDVS 206 (892)
T ss_pred CchHHHHHHHHHHHHhcCCCCC--cccHHHHHHHHHhcCCcHHHHHHHHHhhccC----------cccchhHHHHhhhhh
Confidence 8888887777776654321111 123455555544 477788888776655432 344677777777777
Q ss_pred HHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChH
Q 007918 331 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 410 (585)
Q Consensus 331 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~ 410 (585)
.-+|..+..-+-.=.... ....+.-+-++...++|.+..|+.++..++..=.-.... ..++..+..+--+.+.+
T Consensus 207 ~anRrlvY~r~lpkid~r--~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~d----gni~ElL~~ldvsnss~ 280 (892)
T KOG2025|consen 207 GANRRLVYERCLPKIDLR--SLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSD----GNILELLERLDVSNSSE 280 (892)
T ss_pred HHHHHHHHHHhhhhhhhh--hhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhcc----ccHHHHHHHhccccchH
Confidence 777776665432211111 122345566677788898889988888876541111111 12333333333334447
Q ss_pred HHHHHHHHhHH
Q 007918 411 VRLAIIEYIPL 421 (585)
Q Consensus 411 ~r~~~~~~l~~ 421 (585)
++..+++++-.
T Consensus 281 vavk~lealf~ 291 (892)
T KOG2025|consen 281 VAVKALEALFS 291 (892)
T ss_pred HHHHHHHHHHH
Confidence 77777776644
No 118
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=98.14 E-value=0.0098 Score=57.83 Aligned_cols=168 Identities=14% Similarity=0.038 Sum_probs=107.2
Q ss_pred HHHHHHHhcChhHHHHHHHhhhHHHHHHhhCh--hhhhhhccccccc-ccCCchHHHHHHHHHHhccccccCCcchHHhc
Q 007918 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGE--ERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVL 87 (585)
Q Consensus 11 i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l 87 (585)
+..++....++|..+|..+++.+..+....++ +...+-|+.-+.. ..|.++.||..+..+|..+-..-+.++. .+
T Consensus 93 ~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen--~~ 170 (885)
T COG5218 93 FYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN--RI 170 (885)
T ss_pred HHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH--HH
Confidence 56677788999999999999999988877776 5556556655555 8899999999999999888665444432 22
Q ss_pred hHHHh-hhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCc-cchhhHHhhhHhhcCCCChHHHHHHH
Q 007918 88 LPPLE-TLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWF-TARVSACGLFHIAYPSAPDILKTELR 165 (585)
Q Consensus 88 ~~~l~-~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~-~~r~~a~~~l~~~~~~~~~~~~~~l~ 165 (585)
..++. .+-+||..+||..|+-.+.. +. .-.|++.+-..|-+- ..|..-..+++.+.........+.+.
T Consensus 171 ~n~l~~~vqnDPS~EVRr~allni~v-----dn-----sT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~ 240 (885)
T COG5218 171 VNLLKDIVQNDPSDEVRRLALLNISV-----DN-----STYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRIL 240 (885)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHeee-----CC-----CcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceeh
Confidence 22322 34478999999887544321 11 113333333344332 22333344555554433322333333
Q ss_pred HHHHhhcCCCchHHHHHHHHhHHHHH
Q 007918 166 SIYTQLCQDDMPMVRRSAASNLGKFA 191 (585)
Q Consensus 166 ~~l~~l~~d~~~~vr~~a~~~l~~l~ 191 (585)
++...+.|.+..||.++..++..-.
T Consensus 241 -l~ewgl~dRe~sv~~a~~d~ia~~w 265 (885)
T COG5218 241 -LMEWGLLDREFSVKGALVDAIASAW 265 (885)
T ss_pred -hhhhcchhhhhhHHHHHHHHHHHHh
Confidence 5667788988999999988877644
No 119
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.14 E-value=0.00085 Score=62.59 Aligned_cols=180 Identities=22% Similarity=0.210 Sum_probs=114.6
Q ss_pred HhcCCChHHHHHHHHHhHHHHHh-hChhhH---HHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhC----HHHHHhhh
Q 007918 403 LAEDRHWRVRLAIIEYIPLLASQ-LGVGFF---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG----PEWAMQHI 474 (585)
Q Consensus 403 ~~~~~~~~~r~~~~~~l~~l~~~-~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~l 474 (585)
.+.++....|..++..+..+... +-.+++ ...+++.+.+.++-...+-+..|+.+++.++-.+| .+.+.+.+
T Consensus 51 ~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~ 130 (309)
T PF05004_consen 51 LLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEEL 130 (309)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Confidence 34555566777777666555432 223333 23456667777766655666678888888887766 23345677
Q ss_pred HHHHHhhhcCcc--hHHHHHHHHHHHHhhhhcChHH-HHh---cHHHHHHh--hcC-C---------CCchHHHHHHHHH
Q 007918 475 TPQVLEMINNPH--YLYRMTILRAISLLAPVMGSEI-TCS---RLLPVVIN--ASK-D---------RVPNIKFNVAKVL 536 (585)
Q Consensus 475 l~~l~~~l~~~~--~~~R~~a~~~l~~l~~~~~~~~-~~~---~i~~~l~~--~l~-d---------~~~~vR~~~~~~l 536 (585)
.|.+...+.|.. ...|..++.+++.+.-..+.+. -.. ..+..+.. ..+ | +++.+..+++.+.
T Consensus 131 ~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW 210 (309)
T PF05004_consen 131 KPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAW 210 (309)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHH
Confidence 888888777764 4677888888877654333221 122 23332211 111 1 2357888899999
Q ss_pred HHHHhhhchH---HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 007918 537 QSLIPIVDQS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 582 (585)
Q Consensus 537 ~~l~~~~~~~---~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~~l 582 (585)
+.+....+.. ...+..+|.|..++..++.+||..|.+++.-|....
T Consensus 211 ~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 211 ALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 8888877763 334557788888888889999999999998887653
No 120
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=98.13 E-value=0.0021 Score=59.97 Aligned_cols=186 Identities=18% Similarity=0.196 Sum_probs=127.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHh-hCHHHH---HHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhC----HH
Q 007918 280 VPAYVRLLRDNEAEVRIAAAGKVTKFCRI-LNPELA---IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG----KD 351 (585)
Q Consensus 280 ~~~l~~ll~d~~~~vr~~a~~~l~~l~~~-~~~~~~---~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~----~~ 351 (585)
+...+..+.|+....|..++..+..+... +-.+.+ ...++..+.+.++-...+-+..++++++-++-.+| .+
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 33445566777788999998888776543 333322 34566667777766666667778888888877755 35
Q ss_pred HHHHhHHHHHHHhhcCCC--hHHHHHHHHHhHHhhhhhc--hhHHhhhHHHHHHHH-----hc-C---------CChHHH
Q 007918 352 ATIEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVEL-----AE-D---------RHWRVR 412 (585)
Q Consensus 352 ~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~--~~~~~~~ll~~l~~~-----~~-~---------~~~~~r 412 (585)
.+.+.+.|.+...+.|.. ..+|.+++.+|+-.+-..+ .+.. ...+..+..+ .+ + ++..+.
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~-~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~ 203 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEET-EELMESLESIFLLSILKSDGNAPVVAAEDDAALV 203 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHH-HHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence 567889999999998875 4677888878776653333 2222 2222333311 11 1 235789
Q ss_pred HHHHHHhHHHHHhhChhhH---HHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhC
Q 007918 413 LAIIEYIPLLASQLGVGFF---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 466 (585)
Q Consensus 413 ~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 466 (585)
.+++..++.+...++...+ ....+|.+..+|..++.+||.+|..+++.+.+...
T Consensus 204 ~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 204 AAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999988776333 34468889999999999999999999999877544
No 121
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=98.12 E-value=0.016 Score=59.70 Aligned_cols=180 Identities=13% Similarity=0.033 Sum_probs=117.2
Q ss_pred HHHHHHHhhcCcCccchhhHHhhhHhhcCCCChHHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcc---------
Q 007918 126 YIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--------- 196 (585)
Q Consensus 126 l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--------- 196 (585)
+..++..-+-|+.+.+|..|+..+..+.+-.+...-..++..+.+.+.|+-..+++++..++..-......
T Consensus 473 ~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l~ 552 (1529)
T KOG0413|consen 473 LYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHREAFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLLL 552 (1529)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccchHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhcC
Confidence 34445556667778889988888888776665555566667777777776666776555544332211110
Q ss_pred ------------------cchHHHHHHHHHHhcc-C--hhHHHHHHHHHHHHhhccCchhhhhhhHHHHHHhccCCChHH
Q 007918 197 ------------------AHLKTDIMSIFEDLTQ-D--DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRV 255 (585)
Q Consensus 197 ------------------~~~~~~l~~~l~~l~~-d--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~v 255 (585)
..+...+...+..-.+ | +.|+..+...+......+......+..+-++..+|.|.-..|
T Consensus 553 ~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsv 632 (1529)
T KOG0413|consen 553 DEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSV 632 (1529)
T ss_pred cchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHH
Confidence 0123333343433333 4 669999999999888877766666667889999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcc-cccchHHHHHHhccCChHHHHHHHHHHHHHH
Q 007918 256 RYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF 305 (585)
Q Consensus 256 R~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l 305 (585)
|..++..|+++...-+.-. .....+-.++..+.|.+..|...+...+..+
T Consensus 633 rk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~ 683 (1529)
T KOG0413|consen 633 RKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKV 683 (1529)
T ss_pred HHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999999998765422211 1123445566667787777777777755443
No 122
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.0094 Score=60.56 Aligned_cols=151 Identities=9% Similarity=0.066 Sum_probs=103.4
Q ss_pred HHHHHHHHHHhhcCC-CchHHHHHHHHhHHHHHhhhcccc---hHHHHHHHHHHhccC---hhHHHHHHHHHHHHhhccC
Q 007918 160 LKTELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEPAH---LKTDIMSIFEDLTQD---DSVRLLAVEGCAALGKLLE 232 (585)
Q Consensus 160 ~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~l~~d---~~vr~~a~~~l~~l~~~~~ 232 (585)
-.+.+.|.+..++++ .++.+-..|+.++..+++.++... +....+|.+..-+.- =.|.+.+++++..|.+.-+
T Consensus 208 pv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~ 287 (1051)
T KOG0168|consen 208 PVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP 287 (1051)
T ss_pred cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc
Confidence 357788888888866 478899999999999999886532 233455655543332 4578888888888887766
Q ss_pred chhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCccccc--chHHHHHHhccCChHHHHHHHHHHHHHHHHhhC
Q 007918 233 PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM--DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 310 (585)
Q Consensus 233 ~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~--~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~ 310 (585)
......--+.....++.=-+..+.+.|+..-.++|+.+..+.... +.+|.+..++...+..+-+.++-++..++..+.
T Consensus 288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 543332223333333333345677788888888888887765433 568888888887777777888888888877653
No 123
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=98.07 E-value=0.016 Score=57.63 Aligned_cols=149 Identities=13% Similarity=0.087 Sum_probs=113.2
Q ss_pred hChhhHHHHHHHHHHHHccC----CchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhh-cCcchHHHHHHHHHHHHh
Q 007918 426 LGVGFFDDKLGALCMQWLQD----KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI-NNPHYLYRMTILRAISLL 500 (585)
Q Consensus 426 ~~~~~~~~~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l-~~~~~~~R~~a~~~l~~l 500 (585)
+|...+...+.|.+...... .++.+..+|.-+|..+.. +..++ ..+-+|.++..+ ++|++.+|.+|+-.++.+
T Consensus 884 yGeksvLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMC-lS~~f-c~ehlpllIt~mek~p~P~IR~NaVvglgD~ 961 (1128)
T COG5098 884 YGEKSVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMC-LSFEF-CSEHLPLLITSMEKHPIPRIRANAVVGLGDF 961 (1128)
T ss_pred hchhHHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHH-HhHHH-HHHHHHHHHHHHhhCCCcceeccceeecccc
Confidence 45555566677888777665 678888888888877764 34443 444577777655 589999999999999999
Q ss_pred hhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007918 501 APVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 501 ~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~ 580 (585)
.-++.. +.+.....+.+-+.|.+..||.+|+.++..+...- +.-..--++.+..++.|+|.++...|.--+-.+++
T Consensus 962 ~vcfN~--~~de~t~yLyrrL~De~~~V~rtclmti~fLilag--q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 962 LVCFNT--TADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAG--QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred ceehhh--hhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHcc--ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 877665 56788889999999999999999999998876431 11112356777888999999999999887766654
No 124
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.02 Score=58.26 Aligned_cols=396 Identities=14% Similarity=0.131 Sum_probs=216.8
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcc----cchHHHHHHHHHHhccC---hhHHHHHHHHHHHHhhccCchh
Q 007918 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP----AHLKTDIMSIFEDLTQD---DSVRLLAVEGCAALGKLLEPQD 235 (585)
Q Consensus 163 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~l~~d---~~vr~~a~~~l~~l~~~~~~~~ 235 (585)
.+..++..+-...++..+..++..+......-.+ ....+.+.|.+..++++ .++-..|+.++..+++.+|+..
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 4555555555555666666666666555543322 23467788999999888 5688999999999999998731
Q ss_pred ---hhhhhHHHHHH-hccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCH
Q 007918 236 ---CVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 311 (585)
Q Consensus 236 ---~~~~~~~~l~~-~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~ 311 (585)
.....+|.+.. +..=.--.|-+-+++++..|.+.-++......-+-.++..+.=-...+++.|+..-..+|+.+.+
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~s 327 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRS 327 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 22346676654 55555567888889999888877655433332222333333222356788888888899998877
Q ss_pred HH--HHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCH--HHH----HHhHHHHHHHhhcCC----ChHHHHHHHHH
Q 007918 312 EL--AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DAT----IEQLLPIFLSLLKDE----FPDVRLNIISK 379 (585)
Q Consensus 312 ~~--~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~----~~~l~~~l~~~l~d~----~~~vr~~a~~~ 379 (585)
+. +.-+.+|.+..+++..+.+.-..++-++..++..+.. +.. ...++....+++.-. +..+....+..
T Consensus 328 d~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrm 407 (1051)
T KOG0168|consen 328 DEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRM 407 (1051)
T ss_pred ccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHH
Confidence 63 3457789999999998888888888888888776632 221 122333333333211 22333444444
Q ss_pred hHHhhhhhc---hhHHhhhHHHHHHHHhc----CCCh-------HHHHHHHHHhHHHHHhh---Chhh---HH-------
Q 007918 380 LDQVNQVIG---IDLLSQSLLPAIVELAE----DRHW-------RVRLAIIEYIPLLASQL---GVGF---FD------- 432 (585)
Q Consensus 380 l~~l~~~~~---~~~~~~~ll~~l~~~~~----~~~~-------~~r~~~~~~l~~l~~~~---~~~~---~~------- 432 (585)
+..++..-+ ...+...+...+..++. ..+. +.-....+....+...+ ..+. +.
T Consensus 408 ls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~ 487 (1051)
T KOG0168|consen 408 LSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEI 487 (1051)
T ss_pred HHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhccc
Confidence 444443211 11111122222322221 1110 00111111111111111 1110 00
Q ss_pred ---------------------HHHH-HHHHHHccCCc----------hHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHh
Q 007918 433 ---------------------DKLG-ALCMQWLQDKV----------YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 480 (585)
Q Consensus 433 ---------------------~~l~-~~l~~~l~d~~----------~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~ 480 (585)
..+. .++.+.-.|+. ..-|+..+.-=..+.+ .|...++|.+.+
T Consensus 488 ~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q-----~F~~~llpVLve 562 (1051)
T KOG0168|consen 488 VNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQ-----SFGKDLLPVLVE 562 (1051)
T ss_pred ccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHH-----HHHHHHHHHHHH
Confidence 0000 00000000000 0011111111111111 244568899999
Q ss_pred hhcCc-chHHHHHHHHHHHHhhhhcChHHHH-----hcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH----HHHh
Q 007918 481 MINNP-HYLYRMTILRAISLLAPVMGSEITC-----SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----MVEK 550 (585)
Q Consensus 481 ~l~~~-~~~~R~~a~~~l~~l~~~~~~~~~~-----~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~----~~~~ 550 (585)
.+++. +..||..++.++..+.-+...+.+. ..+-..+--.+..++..|-..+++....+.+.++.. ...+
T Consensus 563 VYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~RE 642 (1051)
T KOG0168|consen 563 VYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRRE 642 (1051)
T ss_pred HHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhh
Confidence 88776 7899999999999988665544321 122234445566778888888888888888777653 3445
Q ss_pred hHHHHHHHhcCCC
Q 007918 551 TIRPCLVELTEDP 563 (585)
Q Consensus 551 ~~~~~l~~l~~D~ 563 (585)
-++..+..|..|.
T Consensus 643 GV~~~v~~L~~~~ 655 (1051)
T KOG0168|consen 643 GVFHAVKQLSVDS 655 (1051)
T ss_pred hHHHHHHHHhccC
Confidence 5777777776543
No 125
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=0.013 Score=55.83 Aligned_cols=274 Identities=15% Similarity=0.100 Sum_probs=161.7
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCcccc-----cchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHH--HHHhhHHHH
Q 007918 250 DKSWRVRYMVANQLYELCEAVGPEPTR-----MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL--AIQHILPCV 322 (585)
Q Consensus 250 d~~~~vR~~~~~~l~~l~~~~~~~~~~-----~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~i~~~l 322 (585)
...|.-|......+.++ .++...+ ..++..+.+-..|++..+|..|+.+|+..+...+.+. +...++..+
T Consensus 228 s~~~~~ritd~Af~ael---~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldai 304 (533)
T KOG2032|consen 228 SEKENGRITDIAFFAEL---KRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAI 304 (533)
T ss_pred hhcccchHHHHHHHHHH---hCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHH
Confidence 34555565555554443 3333322 2344455556689999999999999999988755442 223344444
Q ss_pred -HHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHH---HHHHHhhcCCChHHHHHHHHHhHHhhhhhchh---HHhhh
Q 007918 323 -KELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL---PIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQS 395 (585)
Q Consensus 323 -~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~---~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~ 395 (585)
..+..+.+..|.-.+..++..+.+........+.++ -.+.++..+.++++|.++...++.+.+.-|.. .+.+.
T Consensus 305 i~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~ 384 (533)
T KOG2032|consen 305 IRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQ 384 (533)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHH
Confidence 445566678888888888888776554433333333 34567788999999999999999998877643 34343
Q ss_pred HHHHHHH---HhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHh
Q 007918 396 LLPAIVE---LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQ 472 (585)
Q Consensus 396 ll~~l~~---~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 472 (585)
+...+.. .+.|+++.+-.++-..+ ..+++....+.+-..+.+.+ |.... |..+ .....|..+.
T Consensus 385 v~k~~~~lllhl~d~~p~va~ACr~~~----~~c~p~l~rke~~~~~q~~l-d~~~~-~~q~--Fyn~~c~~L~------ 450 (533)
T KOG2032|consen 385 VKKRLAPLLLHLQDPNPYVARACRSEL----RTCYPNLVRKELYHLFQESL-DTDMA-RFQA--FYNQWCIQLN------ 450 (533)
T ss_pred HHhccccceeeeCCCChHHHHHHHHHH----HhcCchhHHHHHHHHHhhhh-HHhHH-HHHH--HHHHHHHHHh------
Confidence 4433333 34778876544433333 33344443343334443333 22221 2111 1111122221
Q ss_pred hhHHHHHhh-------hcCcch-HHHHHHHHHHHHhhhhcChHH----HHhcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 007918 473 HITPQVLEM-------INNPHY-LYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 540 (585)
Q Consensus 473 ~ll~~l~~~-------l~~~~~-~~R~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~ 540 (585)
.+.|.+... +-+..| .+|.++...-+.......... ....+...+..+..|+-|+|+..+.++++.+.
T Consensus 451 ~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 451 HIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred hhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 122222221 223445 899999888777766544332 34566777888889999999999999998764
No 126
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.01 E-value=0.021 Score=56.98 Aligned_cols=269 Identities=13% Similarity=0.093 Sum_probs=166.0
Q ss_pred HHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHH---HhhcCcCccchhh--HHhhhHhhcCCCC--hHHH
Q 007918 89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVK---RLAAGEWFTARVS--ACGLFHIAYPSAP--DILK 161 (585)
Q Consensus 89 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~---~l~~~~~~~~r~~--a~~~l~~~~~~~~--~~~~ 161 (585)
.++++.-.+..+.+++. +..+.+....+.+...++..+. -..+.+....|.. ++..+..+ +..+ ....
T Consensus 9 ~If~k~Q~s~agh~~kl----~~k~~em~t~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl-~q~d~e~DlV 83 (892)
T KOG2025|consen 9 LIFNKIQQSDAGHYSKL----LAKVMEMLTAHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESL-PQLDKEEDLV 83 (892)
T ss_pred HHHHHHHhhhcchHHHH----HHHHHHhhhHhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhh-hccCchhhHH
Confidence 33444444444443322 2333333344445554544444 2334444333432 23333333 3332 2477
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhc--ccchHHHHHHHHHHhccC--hhHHHHHHHHHHHHhhccCchhhh
Q 007918 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE--PAHLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEPQDCV 237 (585)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~~~~~ 237 (585)
..++.+++...+.++..||..+++.+..++...+ ++.+-+.+...+..-+.| +.||..|+.++..+-..-..+ .
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--e 161 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--E 161 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC--c
Confidence 8888888888999999999999999999987432 234444444444444555 789999999999886532222 3
Q ss_pred hhhHHHHHHhc-cCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHH-HHHHHHhhCHHHHH
Q 007918 238 AHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGK-VTKFCRILNPELAI 315 (585)
Q Consensus 238 ~~~~~~l~~~~-~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~-l~~l~~~~~~~~~~ 315 (585)
-.+...+..+. +|++++||++++.++.. .+.-+|.+.....|-+..+|+.+... +..+ .. .....
T Consensus 162 ~~v~n~l~~liqnDpS~EVRRaaLsnI~v----------dnsTlp~IveRarDV~~anRrlvY~r~lpki-d~-r~lsi- 228 (892)
T KOG2025|consen 162 CPVVNLLKDLIQNDPSDEVRRAALSNISV----------DNSTLPCIVERARDVSGANRRLVYERCLPKI-DL-RSLSI- 228 (892)
T ss_pred ccHHHHHHHHHhcCCcHHHHHHHHHhhcc----------CcccchhHHHHhhhhhHHHHHHHHHHhhhhh-hh-hhhhH-
Confidence 34666666654 58999999999877652 34578999999999988888877553 4444 21 11111
Q ss_pred HhhHHHHHHhccCCcHHHHHHHHHHHHh-hchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHH
Q 007918 316 QHILPCVKELSSDSSQHVRSALASVIMG-MAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 382 (585)
Q Consensus 316 ~~i~~~l~~~~~d~~~~vr~~a~~~l~~-l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 382 (585)
..-.-.+..-+.|.+..|+.++..++.. +.... ...++..+..+=-..+..|+..+++++-.
T Consensus 229 ~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~-----dgni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 229 DKRVLLLEWGLNDREFSVKGALVDAILSGWLRFS-----DGNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhc-----cccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 3445566677899999999999888754 33221 23455555555445566899888888776
No 127
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=98.00 E-value=0.0061 Score=61.45 Aligned_cols=220 Identities=14% Similarity=0.143 Sum_probs=140.9
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHH--HHhcC-----CChHHHHHHHHHhHHHHHhhCh
Q 007918 356 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV--ELAED-----RHWRVRLAIIEYIPLLASQLGV 428 (585)
Q Consensus 356 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~--~~~~~-----~~~~~r~~~~~~l~~l~~~~~~ 428 (585)
..++.+.-.-.|++..|...|-..|.++...+....+.+.++..+. ..-.+ -++.+|...+..+..-....
T Consensus 237 ~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa-- 314 (501)
T PF13001_consen 237 ERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA-- 314 (501)
T ss_pred hHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH--
Confidence 3444444555788888988888899888877665544444444444 11111 35667777777665532221
Q ss_pred hhHHHHHHHHHHHHccCC--chHHHHHHHHHH---HHHHHHhCHHHH---HhhhHHHHHhhhc--------CcchHHHHH
Q 007918 429 GFFDDKLGALCMQWLQDK--VYSIRDAAANNL---KRLAEEFGPEWA---MQHITPQVLEMIN--------NPHYLYRMT 492 (585)
Q Consensus 429 ~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l---~~l~~~~~~~~~---~~~ll~~l~~~l~--------~~~~~~R~~ 492 (585)
...+.++.++...+.+. +..+|..++..+ .......+.... .+.+...+...+. ..+...|..
T Consensus 315 -~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~ 393 (501)
T PF13001_consen 315 -TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSL 393 (501)
T ss_pred -hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHH
Confidence 12345677777777777 778888999999 777777766532 2334444444442 235789999
Q ss_pred HHHHHHHhhhhcChHHH-HhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHH-----HHhhHHH-HHHHhcCCCCc
Q 007918 493 ILRAISLLAPVMGSEIT-CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM-----VEKTIRP-CLVELTEDPDV 565 (585)
Q Consensus 493 a~~~l~~l~~~~~~~~~-~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~-----~~~~~~~-~l~~l~~D~~~ 565 (585)
+.+++|.+++..+.-.. --.++..+.+.+.++.+++|.++-.+|+.+...+.... .....+. .+.....+...
T Consensus 394 aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 473 (501)
T PF13001_consen 394 AYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVR 473 (501)
T ss_pred HHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhH
Confidence 99999999987655321 23456667777788999999999999999988775422 1122222 22334456677
Q ss_pred cHHHHHHHHHHHH
Q 007918 566 DVRFFATQAIQSI 578 (585)
Q Consensus 566 ~Vr~~a~~al~~l 578 (585)
.+|+.|.+-..++
T Consensus 474 ~~R~~avk~an~~ 486 (501)
T PF13001_consen 474 SCRYAAVKYANAC 486 (501)
T ss_pred HHHHHHHHHHHHh
Confidence 7888887765543
No 128
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.99 E-value=0.00093 Score=62.89 Aligned_cols=190 Identities=13% Similarity=0.147 Sum_probs=120.5
Q ss_pred hhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCC----cccccchHHHHHHhccC-ChHHHHHHHHHHHHHHHHhhCHHH
Q 007918 239 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EPTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPEL 313 (585)
Q Consensus 239 ~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~----~~~~~~l~~~l~~ll~d-~~~~vr~~a~~~l~~l~~~~~~~~ 313 (585)
.+...+.++-.+....-|+.+...|..+... |. +....+++..+++.+.| .+...+..|++.|..++..-....
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e-~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l 365 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCE-GSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL 365 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHc-cchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh
Confidence 3445555555555556677777766655432 11 11123567777888888 678889999999999988644332
Q ss_pred --HHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhH
Q 007918 314 --AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 391 (585)
Q Consensus 314 --~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 391 (585)
..+..+..+.+...|.+..|-..|.+.+........+..-...+.|.+.. .+...-..+++.+.++++.+..+.
T Consensus 366 ~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~Ee 441 (516)
T KOG2956|consen 366 FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEE 441 (516)
T ss_pred hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHH
Confidence 12334445556677888777666666655554444334444556666655 334555667778888888777654
Q ss_pred H---hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHH
Q 007918 392 L---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD 433 (585)
Q Consensus 392 ~---~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~ 433 (585)
+ .+.+.|.+.+-..+.+..||..++.++-.+...+|.+.+.+
T Consensus 442 L~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~meP 486 (516)
T KOG2956|consen 442 LLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEP 486 (516)
T ss_pred HHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhh
Confidence 3 34566777777777777788888888877777777544333
No 129
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.98 E-value=0.0024 Score=60.19 Aligned_cols=199 Identities=15% Similarity=0.200 Sum_probs=128.7
Q ss_pred CCChHHHHHHHHHhHHhhhhhch---hHHhhhHHHHHHHHhcC-CChHHHHHHHHHhHHHHHhhChhhHHH--HHHHHHH
Q 007918 367 DEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDD--KLGALCM 440 (585)
Q Consensus 367 d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~~~~~--~l~~~l~ 440 (585)
++..+-|+.|...|..+...-+. +++...++-.+.+.+.| .+...|..++..++.+.+.-....+.. ..+.-++
T Consensus 298 ~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 298 SERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVL 377 (516)
T ss_pred ccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHH
Confidence 33445567777766665532221 22234566666777777 788899999999999887755444332 2233344
Q ss_pred HHccCCchHHHHHHHHH-HHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHH---HHhcHHHH
Q 007918 441 QWLQDKVYSIRDAAANN-LKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI---TCSRLLPV 516 (585)
Q Consensus 441 ~~l~d~~~~vr~~a~~~-l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~---~~~~i~~~ 516 (585)
..-.|.+.+|-..|.+. +..+....+.. -...+.|.++. .++..-..++..+..+.+.+..+. ..+.+.|.
T Consensus 378 eaa~ds~~~v~~~Aeed~~~~las~~P~~-~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~ 452 (516)
T KOG2956|consen 378 EAAKDSQDEVMRVAEEDCLTTLASHLPLQ-CIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPC 452 (516)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHhhCchh-HHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhH
Confidence 55567776665555544 44444444433 23344444444 556666677888888888888765 36889999
Q ss_pred HHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHH
Q 007918 517 VINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQA 574 (585)
Q Consensus 517 l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~D~~~~Vr~~a~~a 574 (585)
+++..++....||..++.+|..++..+|.+ ...|.|..|....-.-+..++.+|
T Consensus 453 ~iqay~S~SS~VRKtaVfCLVamv~~vG~~----~mePhL~~Lt~sk~~LlqlYinRa 506 (516)
T KOG2956|consen 453 VIQAYDSTSSTVRKTAVFCLVAMVNRVGME----EMEPHLEQLTSSKLNLLQLYINRA 506 (516)
T ss_pred HHHHhcCchHHhhhhHHHhHHHHHHHHhHH----hhhhHhhhccHHHHHHHHHHHHHh
Confidence 999999999999999999999999888754 455666666554444444444444
No 130
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.97 E-value=2.7e-05 Score=51.61 Aligned_cols=53 Identities=26% Similarity=0.308 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhhchhhCH--HHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHh
Q 007918 331 QHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 383 (585)
Q Consensus 331 ~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 383 (585)
|.||..++.+|+.++...+. ..+.+.++|.+..+++|+++.||.+|+.+|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 67888888888887655543 235677888888888888888888888888764
No 131
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.94 E-value=1.8e-05 Score=52.54 Aligned_cols=52 Identities=21% Similarity=0.105 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHhhhhcChH--HHHhcHHHHHHhhcCCCCchHHHHHHHHHHH
Q 007918 487 YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQS 538 (585)
Q Consensus 487 ~~~R~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~ 538 (585)
|.+|.+|+.+++.++...+.. .+...++|.|..+++|+++.||.+++.+|++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 345666666666555433321 2455666666666666666666666666654
No 132
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.92 E-value=0.02 Score=62.74 Aligned_cols=145 Identities=12% Similarity=0.031 Sum_probs=97.0
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHH--HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHH
Q 007918 433 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 510 (585)
Q Consensus 433 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~ 510 (585)
..++|.+...+...+..+|..|...+|.+....+...+ .+.+....+..++|....+|..+++...++....+. ..
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~--~~ 335 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPS--IA 335 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCch--hh
Confidence 34788888888889999999999999999875544333 244556666778999999999999999888765322 22
Q ss_pred hcHHHHHHhhcCCCCchHHHHHHHHHHHHH-hhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007918 511 SRLLPVVINASKDRVPNIKFNVAKVLQSLI-PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 511 ~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~-~~~~~~~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~ 580 (585)
......+.-...|.++++|.....++...- ..+.-..... ++..+.+.+.|.-+.||..|.+.+..+++
T Consensus 336 ~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 336 KASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred hHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 222222222234555666654433332221 1111122223 66777777899999999999999999987
No 133
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.0027 Score=64.36 Aligned_cols=185 Identities=18% Similarity=0.223 Sum_probs=128.3
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhH
Q 007918 242 PVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL 319 (585)
Q Consensus 242 ~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~ 319 (585)
........|+...+|..++..+..+++.-.+ -...+.++..+.+.++|.|+-|=-.|++.+..+++..+.+. .+.+.
T Consensus 730 qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~i-l~dL~ 808 (982)
T KOG4653|consen 730 QEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDI-LPDLS 808 (982)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhh-HHHHH
Confidence 3344556788888999999999988874322 23345788999999999999999999999999988754332 23333
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhhchhhCHH--HHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhc---hhHHhh
Q 007918 320 PCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQ 394 (585)
Q Consensus 320 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~ 394 (585)
..+..--+....+.|-..-+++..++...|+- .+.+.+...++...+|++...|.+++..++.++.... .+++ .
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~-~ 887 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF-H 887 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH-H
Confidence 33333222232344444557777777666642 3456777788888888888889999999999887653 3343 3
Q ss_pred hHHHHHHHH-hcCCChHHHHHHHHHhHHHHHhhCh
Q 007918 395 SLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGV 428 (585)
Q Consensus 395 ~ll~~l~~~-~~~~~~~~r~~~~~~l~~l~~~~~~ 428 (585)
.+...+..+ ..|...-+|.+|+..+..+....|.
T Consensus 888 ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~ 922 (982)
T KOG4653|consen 888 EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGE 922 (982)
T ss_pred HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccch
Confidence 444444444 3577888999999999888877663
No 134
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.87 E-value=0.047 Score=56.35 Aligned_cols=146 Identities=16% Similarity=0.192 Sum_probs=108.4
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHH---HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcCh--H
Q 007918 433 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA---MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--E 507 (585)
Q Consensus 433 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~--~ 507 (585)
..+.|.+..........+|..-+.+|..+..+.+.+.. .+.++|.+++.+.-++..+|.....++..+....+. .
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 34667776666655666777777777777776555432 367888888888888888888888888877765443 2
Q ss_pred HHHhcHHHHHHhhcCCCC---chHHHHHHHHHHHHHhhhchH---HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007918 508 ITCSRLLPVVINASKDRV---PNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 578 (585)
Q Consensus 508 ~~~~~i~~~l~~~l~d~~---~~vR~~~~~~l~~l~~~~~~~---~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l 578 (585)
.....+.|.++.+-.|.+ ..||..+++++..+....+.+ .+...++..|...+.|+.+-||..|..+=+.=
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 356788888888888776 568999999999888766554 45567888888888999999998888765443
No 135
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.82 E-value=0.011 Score=53.69 Aligned_cols=224 Identities=17% Similarity=0.220 Sum_probs=133.2
Q ss_pred HHhhcCCCchHHHHHHHHhHHHHHhhhcccc----hHHHHHHHHHHhccChhHHHHHHHHHHHHhhc--cCchhhhhhhH
Q 007918 168 YTQLCQDDMPMVRRSAASNLGKFAATVEPAH----LKTDIMSIFEDLTQDDSVRLLAVEGCAALGKL--LEPQDCVAHIL 241 (585)
Q Consensus 168 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~l~~d~~vr~~a~~~l~~l~~~--~~~~~~~~~~~ 241 (585)
+...+.++++.+|..+...|..+...++++. -.+.+..++..-+.|...-..++.++..+... ++++. ...++
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~~~i~ 82 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-AVKIL 82 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-HHHHH
Confidence 3455677788888888888888888876532 23445555555555533222336666666632 22222 22233
Q ss_pred HHHHHhc--cCCChHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHHhc-cCChHHHHHHHHHHHHHHHHhhCHHHHHH
Q 007918 242 PVIVNFS--QDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQ 316 (585)
Q Consensus 242 ~~l~~~~--~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 316 (585)
..+.+-. +.-....|..+.+.+..+........ ....++..+++.+ +++||+.-..+.+.+..+...+....+.+
T Consensus 83 ~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e 162 (262)
T PF14500_consen 83 RSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAE 162 (262)
T ss_pred HHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHH
Confidence 3332221 22344678888888888876643221 1234555666655 45678888888888888888776555555
Q ss_pred hhHHHHHHhc--------cCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhc
Q 007918 317 HILPCVKELS--------SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 388 (585)
Q Consensus 317 ~i~~~l~~~~--------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 388 (585)
.++..+.... +|+..-.|......+..... ....+.+..+|.+...|.++.+.++..+++.|..-+..+|
T Consensus 163 ~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 163 DLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYG 240 (262)
T ss_pred HHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCC
Confidence 5555543221 24433333433333333211 1234567788889888888888899888888888888887
Q ss_pred hhHHhh
Q 007918 389 IDLLSQ 394 (585)
Q Consensus 389 ~~~~~~ 394 (585)
.+.+.+
T Consensus 241 ~~~~~~ 246 (262)
T PF14500_consen 241 ADSLSP 246 (262)
T ss_pred HHHHHH
Confidence 655433
No 136
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.79 E-value=0.064 Score=55.59 Aligned_cols=144 Identities=17% Similarity=0.199 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhcc-CCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHH
Q 007918 294 VRIAAAGKVTKFCRILNPELAIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDV 372 (585)
Q Consensus 294 vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v 372 (585)
+|..+.-.|+.++-. .+......+|.+.+-+. .....+|...+-+++.++..+. ...+.-.|.+...|.|+++-|
T Consensus 947 vra~~vvTlakmcLa--h~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT--am~d~YiP~I~~~L~Dp~~iV 1022 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLA--HDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT--AMTDRYIPMIAASLCDPSVIV 1022 (1529)
T ss_pred HHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH--HHHHHhhHHHHHHhcCchHHH
Confidence 455555555555433 22333456666654433 3445667766666666664432 123555677888888888888
Q ss_pred HHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHH
Q 007918 373 RLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW 442 (585)
Q Consensus 373 r~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~ 442 (585)
|..++..|.++.+. |.-.+...++=.+.-.+-|.+..+|..+=.+++.+.+.-.+.+|...++..++.+
T Consensus 1023 Rrqt~ilL~rLLq~-~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~~l 1091 (1529)
T KOG0413|consen 1023 RRQTIILLARLLQF-GIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYIIAL 1091 (1529)
T ss_pred HHHHHHHHHHHHhh-hhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHH
Confidence 88888888877642 3223333444444445567778888888778887777666666666666665544
No 137
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.017 Score=57.51 Aligned_cols=146 Identities=16% Similarity=0.124 Sum_probs=88.3
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhH-------HhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHH----h
Q 007918 357 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL-------LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS----Q 425 (585)
Q Consensus 357 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-------~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~----~ 425 (585)
.-|.+...|+-.+..||.+|+..+-.+....+++. ..+.-...+.+++.|+-+.+|..++..+..+.. .
T Consensus 175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~ 254 (1005)
T KOG1949|consen 175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM 254 (1005)
T ss_pred HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 44666777777777888877777766665555432 112223445566777777777776665544332 2
Q ss_pred hChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhh
Q 007918 426 LGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP 502 (585)
Q Consensus 426 ~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~ 502 (585)
+++..+.+-+--++-.+..|...+||.+..+.+..+..+-......+.++|.+--.+.|....+|.++++.+..|-.
T Consensus 255 iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 255 IPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred cCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 33333333222233334456677788888777777765433333456677766666777777888887777766643
No 138
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.75 E-value=0.0086 Score=65.41 Aligned_cols=209 Identities=16% Similarity=0.164 Sum_probs=119.7
Q ss_pred CCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC-hhHHHHHHHHHHHHhhccCchhhhhhhHHHHHHhccCC
Q 007918 173 QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD-DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK 251 (585)
Q Consensus 173 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d-~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~ 251 (585)
.+....-+..+...+...+..+. ..+.+.+...+..-..- -.++....+.+-.+....+. ....++|.+..-+..+
T Consensus 195 ~~~~~~a~~la~~li~~~a~~~~-~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~--ll~~vip~l~~eL~se 271 (1266)
T KOG1525|consen 195 RDTIKEADKLASDLIERCADNLE-DTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQ--LLLAVIPQLEFELLSE 271 (1266)
T ss_pred CCccHHHHHHHHHHHHHhhhhhc-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHH--HHHHHHHHHHHHHhcc
Confidence 34444555555555555554442 22222232222211111 22344444444444333221 2445778888878888
Q ss_pred ChHHHHHHHHHHHHHHHHhCCccc--ccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCC
Q 007918 252 SWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS 329 (585)
Q Consensus 252 ~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~ 329 (585)
+..+|..|...+|.+...-+.... ...+...++..+.|.+.+||..+++....+.-.-+.-.....+...+....-|.
T Consensus 272 ~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~ 351 (1266)
T KOG1525|consen 272 QEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDE 351 (1266)
T ss_pred hHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCCh
Confidence 899999999999988765433322 456888888999999999999999988877654222121122333333344455
Q ss_pred cHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhh
Q 007918 330 SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 386 (585)
Q Consensus 330 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 386 (585)
+.++|...+-....+... .. .+.+.++..+...+.|....||..|+..|..+.+.
T Consensus 352 ~~rir~~v~i~~~~v~~~-~l-~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 352 DVRVRTQVVIVACDVMKF-KL-VYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hhhheeeEEEEEeehhHh-hh-hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 555554332222221110 11 11222667777788899999999999999999874
No 139
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.73 E-value=0.078 Score=54.82 Aligned_cols=146 Identities=14% Similarity=0.134 Sum_probs=116.3
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHH---HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCH--H
Q 007918 394 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--E 468 (585)
Q Consensus 394 ~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~ 468 (585)
..+.|.+...+.......|...+..++.+..+.+.+.+. +.++|++++.++=++..||..+..++..+....+. .
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 456788887776555667777888888887777655433 56899999999999999999999999988765443 2
Q ss_pred HHHhhhHHHHHhhhcCcc---hHHHHHHHHHHHHhhhhcChHH---HHhcHHHHHHhhcCCCCchHHHHHHHHHHHH
Q 007918 469 WAMQHITPQVLEMINNPH---YLYRMTILRAISLLAPVMGSEI---TCSRLLPVVINASKDRVPNIKFNVAKVLQSL 539 (585)
Q Consensus 469 ~~~~~ll~~l~~~l~~~~---~~~R~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l 539 (585)
.....++|.++.+-.|.+ ..+|..|+++++.+.+..+... +.+.++..+.+.++|+..-||..|.++=...
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 246789999998877765 5799999999999998665442 5788999999999999999999998876554
No 140
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.12 Score=56.62 Aligned_cols=149 Identities=14% Similarity=0.169 Sum_probs=94.9
Q ss_pred hhHHHHHHH-HhcCCChHHHHHHHHHhHHHHH--hhC-hhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHH
Q 007918 394 QSLLPAIVE-LAEDRHWRVRLAIIEYIPLLAS--QLG-VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 469 (585)
Q Consensus 394 ~~ll~~l~~-~~~~~~~~~r~~~~~~l~~l~~--~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 469 (585)
..++..+.. ...+..|++|.+++..+....= .++ .+.-.+.+-..+...+.|...+||+.|..+|..+.+.-...+
T Consensus 1525 ~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~ 1604 (1710)
T KOG1851|consen 1525 PEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQF 1604 (1710)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccccc
Confidence 456666664 3446789999999988876542 222 222345678889999999999999999999999887432221
Q ss_pred HHhhhHHHHHhhh-cCcchHHHHHHHHHHHHhhhhcChHH--HHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh
Q 007918 470 AMQHITPQVLEMI-NNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 543 (585)
Q Consensus 470 ~~~~ll~~l~~~l-~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~ 543 (585)
..++.-+...... ...+...+.+|+..++.++-.++... +..+.+..+.....++ ..++.++-+++...-...
T Consensus 1605 ~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth 1680 (1710)
T KOG1851|consen 1605 VSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTH 1680 (1710)
T ss_pred chHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHh
Confidence 1122222222222 23356678889999999987665431 2344444444444454 678888888888775443
No 141
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.67 E-value=0.028 Score=51.00 Aligned_cols=227 Identities=15% Similarity=0.143 Sum_probs=132.4
Q ss_pred HhccCCcHHHHHHHHHHHHhhchhhCHHH----HHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhh--hchhHHhhhHH
Q 007918 324 ELSSDSSQHVRSALASVIMGMAPLLGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV--IGIDLLSQSLL 397 (585)
Q Consensus 324 ~~~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~ll 397 (585)
..+.++++.+|..+...+..+...++++. ..+.+...+...+.|. ..+. .++.++..+... ++.+.. ..++
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~-~~l~gl~~L~~~~~~~~~~~-~~i~ 82 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQ-PALKGLLALVKMKNFSPESA-VKIL 82 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHH-HHHHHHHHHHhCcCCChhhH-HHHH
Confidence 34566677777777777776666655432 2344555555666443 3333 335565555522 222221 2333
Q ss_pred HHHHHHhc--CCChHHHHHHHHHhHHHHHhhChhh--HHHHHHHHHHH-HccCCchHHHHHHHHHHHHHHHHhCHHHHHh
Q 007918 398 PAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQ-WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQ 472 (585)
Q Consensus 398 ~~l~~~~~--~~~~~~r~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 472 (585)
..+.+-.. .-....|..+...+..+........ ..+.++..+.+ +-+..+++--.-+.+.+..+...+....+.+
T Consensus 83 ~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e 162 (262)
T PF14500_consen 83 RSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAE 162 (262)
T ss_pred HHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHH
Confidence 33332111 2234678888888888876643211 12223333333 3356777777778888888877766544444
Q ss_pred hhHHHHHhhh--------cCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc
Q 007918 473 HITPQVLEMI--------NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 544 (585)
Q Consensus 473 ~ll~~l~~~l--------~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~ 544 (585)
.+...+.-.+ +|+..-.|+.....+..... ....+.+..+|.+++-+.+..+.+|.-+++++...+..++
T Consensus 163 ~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 163 DLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYG 240 (262)
T ss_pred HHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCC
Confidence 4444443331 23333345555555544433 2233778999999999999999999999999999999988
Q ss_pred hHHHHhhHHHH
Q 007918 545 QSMVEKTIRPC 555 (585)
Q Consensus 545 ~~~~~~~~~~~ 555 (585)
.....+++.+.
T Consensus 241 ~~~~~~~~~~i 251 (262)
T PF14500_consen 241 ADSLSPHWSTI 251 (262)
T ss_pred HHHHHHHHHHH
Confidence 77555544443
No 142
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.023 Score=56.61 Aligned_cols=143 Identities=22% Similarity=0.216 Sum_probs=72.2
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhhchhhCHHH-------HHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhh----hc
Q 007918 320 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDA-------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV----IG 388 (585)
Q Consensus 320 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~-------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~----~~ 388 (585)
|.+-+.++-+|..||..|+..+-++-...+++. .++.=...+..+|.|+.+.||..|...+..+... ++
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 444455555666666666666655554444322 1222234455566666666666666555554432 23
Q ss_pred hhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Q 007918 389 IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 462 (585)
Q Consensus 389 ~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 462 (585)
+..+.+.+-..+..+..|....||.++.+.+..+...--.-...++++|.+-..+.|....||.++...+..+-
T Consensus 257 ~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 257 PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 32222211122222444555566666666666555432222234455666666666666666666666665543
No 143
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.64 E-value=0.0001 Score=41.75 Aligned_cols=28 Identities=36% Similarity=0.394 Sum_probs=16.0
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHHHHH
Q 007918 436 GALCMQWLQDKVYSIRDAAANNLKRLAE 463 (585)
Q Consensus 436 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 463 (585)
+|.+.++++|++++||.+|+.+++.+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4555566666666666666666665554
No 144
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.0016 Score=62.82 Aligned_cols=246 Identities=12% Similarity=0.026 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCC-Ch
Q 007918 292 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE-FP 370 (585)
Q Consensus 292 ~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~ 370 (585)
+.+...++-.++-+.- |.. ..++...+++++...+.-.-+++....+-+.-..+..... .-+.+.-... ..
T Consensus 425 ~~l~yG~~LGiGL~~M--gSa--n~eiye~lKe~l~nD~a~~geAa~~gMGl~mLgt~s~eai----~dm~tya~ETqhe 496 (926)
T COG5116 425 PELAYGVCLGIGLINM--GSA--NREIYEKLKELLKNDRALLGEAAVYGMGLLMLGTWSVEAI----EDMRTYAGETQHE 496 (926)
T ss_pred HHHHHHHHhhhcchhc--ccc--cHHHHHHHHHHHhcchhhhhhhhhhccceeeecCCCHHHH----HHHHHHhcchhhh
Confidence 4566666655554321 221 1455666777766555544444444443332222211112 2222332222 23
Q ss_pred HHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHH
Q 007918 371 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 450 (585)
Q Consensus 371 ~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v 450 (585)
.+..+..-.+.-+ ..|.+.. .-..+.+++.|.++..|...+..+..---..|..-... .++.-..+|.+..|
T Consensus 497 ~i~Rglgig~aLi--~ygrqe~---add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~---~lLh~avsD~nDDV 568 (926)
T COG5116 497 RIKRGLGIGFALI--LYGRQEM---ADDYINELLYDKDSILRYNGVFSLALAYVGTGNLGVVS---TLLHYAVSDGNDDV 568 (926)
T ss_pred hHHhhhhhhhhHh--hhhhHHH---HHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcchhHh---hhheeecccCchHH
Confidence 4444433333332 2343332 33456678889999999887766543322223322222 22223368999999
Q ss_pred HHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcC-cchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHH
Q 007918 451 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIK 529 (585)
Q Consensus 451 r~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~-~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR 529 (585)
|.+|+-++|.+|-. ....++..++++.+ .|..+|.+..-+++-.+...|. +..+..|-.+..|++.-||
T Consensus 569 rRAAViAlGfvc~~------D~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~----~~a~diL~~L~~D~~dfVR 638 (926)
T COG5116 569 RRAAVIALGFVCCD------DRDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD----KVATDILEALMYDTNDFVR 638 (926)
T ss_pred HHHHHHheeeeEec------CcchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc----HHHHHHHHHHhhCcHHHHH
Confidence 99999999988642 23466777777655 5899999999999988887776 4455667778889999999
Q ss_pred HHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCC
Q 007918 530 FNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDP 563 (585)
Q Consensus 530 ~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~l~~D~ 563 (585)
+.++.+++.+.....++ .-...+...+.++..|.
T Consensus 639 Q~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~K 674 (926)
T COG5116 639 QSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDK 674 (926)
T ss_pred HHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhh
Confidence 99999999987654432 22334444455544444
No 145
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.62 E-value=8.6e-05 Score=42.07 Aligned_cols=28 Identities=32% Similarity=0.531 Sum_probs=13.9
Q ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007918 553 RPCLVELTEDPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 553 ~~~l~~l~~D~~~~Vr~~a~~al~~l~~ 580 (585)
+|.+.++++|++++||..|..+++.|.+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4444555555555555555555555544
No 146
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.60 E-value=0.17 Score=58.18 Aligned_cols=269 Identities=13% Similarity=0.176 Sum_probs=156.1
Q ss_pred hHHHHHHHHHHh-ccC-hhHHHHHHHHHHHHhhccCc-h-----hhhhhhHHHHHH-hccCCChHHHHHHHHHHHHHHHH
Q 007918 199 LKTDIMSIFEDL-TQD-DSVRLLAVEGCAALGKLLEP-Q-----DCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEA 269 (585)
Q Consensus 199 ~~~~l~~~l~~l-~~d-~~vr~~a~~~l~~l~~~~~~-~-----~~~~~~~~~l~~-~~~d~~~~vR~~~~~~l~~l~~~ 269 (585)
+|..+-+.+... ++. ..++..|+..|..++-.+-+ + .+.+.++.-+.. +.+..+..+|...++++..+...
T Consensus 1134 iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s 1213 (1780)
T PLN03076 1134 IWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLS 1213 (1780)
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 444455555553 332 45888888888777664433 2 223334433333 44567789999999999999887
Q ss_pred hCCcc--cccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCH------HHHHHhhHHHHHHhccCC-cHHHHHHHHHH
Q 007918 270 VGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP------ELAIQHILPCVKELSSDS-SQHVRSALASV 340 (585)
Q Consensus 270 ~~~~~--~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~i~~~l~~~~~d~-~~~vr~~a~~~ 340 (585)
.+... ....++..+-....++++.+-..+.+.+..+...+-. ......++..+..+.+.. +.++--.++..
T Consensus 1214 ~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~l 1293 (1780)
T PLN03076 1214 RVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAF 1293 (1780)
T ss_pred HHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHH
Confidence 66533 2345666666666787788888888888877653211 111244455555555432 23333333333
Q ss_pred HHhhchhh-----------------------------------CHHHHHHhHHHHHH---HhhcCCChHHHHHHHHHhHH
Q 007918 341 IMGMAPLL-----------------------------------GKDATIEQLLPIFL---SLLKDEFPDVRLNIISKLDQ 382 (585)
Q Consensus 341 l~~l~~~~-----------------------------------~~~~~~~~l~~~l~---~~l~d~~~~vr~~a~~~l~~ 382 (585)
+..++..+ +.+......+|++. .+..|+..+||..|+..|-.
T Consensus 1294 L~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~ 1373 (1780)
T PLN03076 1294 LRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFD 1373 (1780)
T ss_pred HHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 33221111 01111223455554 34678999999999999988
Q ss_pred hhhhhchh----H----HhhhHHHHHHHHhc-----------------C------CChHHHHHHHHHhHHHHHhhCh---
Q 007918 383 VNQVIGID----L----LSQSLLPAIVELAE-----------------D------RHWRVRLAIIEYIPLLASQLGV--- 428 (585)
Q Consensus 383 l~~~~~~~----~----~~~~ll~~l~~~~~-----------------~------~~~~~r~~~~~~l~~l~~~~~~--- 428 (585)
+....|.. . +...+.|.+..+-. + ..| ....+..++..+...+..
T Consensus 1374 iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~W-l~eT~~~AL~~lvdLft~fFd 1452 (1780)
T PLN03076 1374 TLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAW-LYETCTLALQLVVDLFVKFYP 1452 (1780)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 88776642 2 22344555443210 0 112 345555556555554432
Q ss_pred --hhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHH
Q 007918 429 --GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 468 (585)
Q Consensus 429 --~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 468 (585)
....+.++.++..++..++..+-.....+|..+....|..
T Consensus 1453 ~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~ 1494 (1780)
T PLN03076 1453 TVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHL 1494 (1780)
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhcc
Confidence 1233456666777778888888888999999998877653
No 147
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.56 E-value=0.021 Score=54.80 Aligned_cols=127 Identities=20% Similarity=0.235 Sum_probs=87.6
Q ss_pred CchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhc------CcchHHHHHHHHHHHHhhhhc-----C---------
Q 007918 446 KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN------NPHYLYRMTILRAISLLAPVM-----G--------- 505 (585)
Q Consensus 446 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~------~~~~~~R~~a~~~l~~l~~~~-----~--------- 505 (585)
....-|.+|++.+..+++..+... .+.+...+..+++ ..+|..+.+|+..++.++... |
T Consensus 223 d~~TrR~AA~dfl~~L~~~~~~~v-~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~ 301 (370)
T PF08506_consen 223 DSDTRRRAACDFLRSLCKKFEKQV-TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD 301 (370)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred ccCCcHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence 346789999999999998766542 2222233333332 347899999999999997533 1
Q ss_pred -hHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHH
Q 007918 506 -SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 575 (585)
Q Consensus 506 -~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~D~~~~Vr~~a~~al 575 (585)
.+++...++|.|. .-.+..|-+|..|++.+...-..++++ ....++|.+...+.+++.-|+..|+-|+
T Consensus 302 v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~-~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE-QLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH-HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1335677788777 344567889999999999988877654 4567999999999999999999998774
No 148
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.0044 Score=55.34 Aligned_cols=176 Identities=11% Similarity=0.100 Sum_probs=113.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHH---HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHh
Q 007918 396 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQ 472 (585)
Q Consensus 396 ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 472 (585)
.+......+.+++|.....++..+..++.... +... ..++..+.+-+......|-.+|+.+++.+...++.....
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~-e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~- 166 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHP-ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQ- 166 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34444556778889888888888888776544 2222 234555666778888888889999999998887765322
Q ss_pred hhHHHHHhhh---cCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH---
Q 007918 473 HITPQVLEMI---NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--- 546 (585)
Q Consensus 473 ~ll~~l~~~l---~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--- 546 (585)
.+-..+..++ ...+.-+|..|-.+|..+.....+ ..+++.|+..+...++.+|..++.++......++-.
T Consensus 167 ~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp----~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~ 242 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP----QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVL 242 (334)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh----HHHHHHHHHHHhhhchhhhhhhhccccccceeccccchh
Confidence 3333333333 345677899999999888887776 455666666677788888888888877776665422
Q ss_pred -HHHhhHHHHHHHhcCCCCccHHHHHHHHHHH
Q 007918 547 -MVEKTIRPCLVELTEDPDVDVRFFATQAIQS 577 (585)
Q Consensus 547 -~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~ 577 (585)
++.....+.+.+=..|.-+.+|..|.-....
T Consensus 243 ~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~ 274 (334)
T KOG2933|consen 243 LQGSCDLSRAAQEQGSDKLPELREAARFVRLE 274 (334)
T ss_pred hHhHHHHHHHHHhhhcccccccccchhHHHHh
Confidence 2222333444444455555555444443333
No 149
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.0036 Score=55.89 Aligned_cols=173 Identities=14% Similarity=0.146 Sum_probs=116.9
Q ss_pred chHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHH--
Q 007918 278 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT-- 353 (585)
Q Consensus 278 ~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~-- 353 (585)
..+...+..+.+++|+.....+..+..++...... .....++..+.+-+++....|-.+++.+++.+...++....
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566778888999988888888887764432 22345555666667778888888888888888777764332
Q ss_pred HHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChh----
Q 007918 354 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---- 429 (585)
Q Consensus 354 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---- 429 (585)
.+.++-.+..--.+++..||..|-.+|..+.....+. .+++.+...+.+.++++|..++.++......+|..
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~----~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~ 243 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ----KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLL 243 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH----HHHHHHHHHHhhhchhhhhhhhccccccceeccccchhh
Confidence 2233333333334556789999999999999887764 45666666778889999999988887777666522
Q ss_pred hHHHHHHHHHHHHccCCchHHHHHH
Q 007918 430 FFDDKLGALCMQWLQDKVYSIRDAA 454 (585)
Q Consensus 430 ~~~~~l~~~l~~~l~d~~~~vr~~a 454 (585)
++...+.+.+.+-+.|.-+.+|++|
T Consensus 244 ~~~~dl~~a~~~~~~d~Lp~~~~~a 268 (334)
T KOG2933|consen 244 QGSCDLSRAAQEQGSDKLPELREAA 268 (334)
T ss_pred HhHHHHHHHHHhhhcccccccccch
Confidence 2223445555556666666666544
No 150
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=97.52 E-value=0.017 Score=60.92 Aligned_cols=163 Identities=18% Similarity=0.205 Sum_probs=97.6
Q ss_pred hHHHHHHHHhcC----CChHHHHHHHHHhHHHHHhhChh----------------hHHHHHHHHHHHHccCCchHHHHHH
Q 007918 395 SLLPAIVELAED----RHWRVRLAIIEYIPLLASQLGVG----------------FFDDKLGALCMQWLQDKVYSIRDAA 454 (585)
Q Consensus 395 ~ll~~l~~~~~~----~~~~~r~~~~~~l~~l~~~~~~~----------------~~~~~l~~~l~~~l~d~~~~vr~~a 454 (585)
.++..+..+++. .+..+|..++-.++.+....-.. .+.+.+...+.......+.+.+..+
T Consensus 431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 510 (618)
T PF01347_consen 431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVY 510 (618)
T ss_dssp HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence 455555555543 34568888888888777543211 1223444445555566777888999
Q ss_pred HHHHHHHHHHhCHHHHHhhhHHHHHhhhcCc---chHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHH
Q 007918 455 ANNLKRLAEEFGPEWAMQHITPQVLEMINNP---HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFN 531 (585)
Q Consensus 455 ~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~---~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~ 531 (585)
+++||++.. +..++.+...+.+. ...+|.+|+.++..+...+. +...+.++|++.+-- .+++||.+
T Consensus 511 LkaLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~-~~v~~~l~~I~~n~~--e~~EvRia 579 (618)
T PF01347_consen 511 LKALGNLGH--------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP-EKVREILLPIFMNTT--EDPEVRIA 579 (618)
T ss_dssp HHHHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H-HHHHHHHHHHHH-TT--S-HHHHHH
T ss_pred HHHhhccCC--------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc-HHHHHHHHHHhcCCC--CChhHHHH
Confidence 999998732 35778887777665 67899999999998866543 224455555555433 35789998
Q ss_pred HHHHHHHHHhhhchHHHHhhHHHHHH-HhcCCCCccHHHHHHHHH
Q 007918 532 VAKVLQSLIPIVDQSMVEKTIRPCLV-ELTEDPDVDVRFFATQAI 575 (585)
Q Consensus 532 ~~~~l~~l~~~~~~~~~~~~~~~~l~-~l~~D~~~~Vr~~a~~al 575 (585)
|...+-..-+. . ..+..+. .+-.|++..|+....-.|
T Consensus 580 A~~~lm~~~P~---~----~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 580 AYLILMRCNPS---P----SVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHHHHT------H----HHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHHHhcCCC---H----HHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 88776664222 2 2333333 356789999988776554
No 151
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.011 Score=57.22 Aligned_cols=134 Identities=16% Similarity=0.046 Sum_probs=84.3
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHh-ccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHH
Q 007918 281 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL-SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP 359 (585)
Q Consensus 281 ~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 359 (585)
.++.+++.|.++..|...+.+++----..|.. .++..+... .+|.+.+||++++-+++-++-. ....++
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~alAy~GTgn~----~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~------D~~~lv 588 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLALAYVGTGNL----GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD------DRDLLV 588 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHHHHhcCCcc----hhHhhhheeecccCchHHHHHHHHheeeeEec------Ccchhh
Confidence 35566777888888877666555432222322 222333333 6788888888888888776521 123344
Q ss_pred HHHHhhcC-CChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhCh
Q 007918 360 IFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 428 (585)
Q Consensus 360 ~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~ 428 (585)
...++|.+ -++.||.+.+-+|+-.+..-|.+ .....+..+..|++.-||++++-+.+.+.....+
T Consensus 589 ~tvelLs~shN~hVR~g~AvaLGiacag~G~~----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~ 654 (926)
T COG5116 589 GTVELLSESHNFHVRAGVAVALGIACAGTGDK----VATDILEALMYDTNDFVRQSAMIAVGMILMQCNP 654 (926)
T ss_pred HHHHHhhhccchhhhhhhHHHhhhhhcCCccH----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence 44444544 36788888888888877766653 3445566677888888888888887777655543
No 152
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=97.44 E-value=0.14 Score=50.22 Aligned_cols=240 Identities=12% Similarity=0.100 Sum_probs=138.2
Q ss_pred HHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhcccccccccCCchHHHHHHHHHHhcccccc--CCcc---hHH
Q 007918 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYV--GGVE---HAH 85 (585)
Q Consensus 11 i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~l~~~~--~~~~---~~~ 85 (585)
...++++.+..-...|........... .-+.+.....++..+..++. ++.+--.+.+-+..|..|. .+|+ ++.
T Consensus 13 ~~~if~k~Q~s~aGhrk~~a~l~~~~t-~~~f~~~flr~vn~IL~~Kk-~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~ 90 (885)
T COG5218 13 MQLIFNKIQQSSAGHRKSLAELMEMLT-AHEFSEEFLRVVNTILACKK-NPSIPDRILSFLKRFFEYDMPDDPEGEELVA 90 (885)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHH-HHhhHHHHHHHHHHhhcccc-CCCcHHHHHHHHHHHHHhcCCCChhhhHHHH
Confidence 344556666666677776654333321 11222222222322222221 1111122334444444432 1232 333
Q ss_pred hchHHHhhhhhchhhHHHHHHHHHHHHHHhhcCh--hhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChHHHHH
Q 007918 86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE--SDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTE 163 (585)
Q Consensus 86 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~ 163 (585)
.++.-+...+.+++..||..+++.|+.+...+.+ +.+.+.++..+.+-.-|....||..|..+++..-+.-+.+. ..
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee-n~ 169 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE-NR 169 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH-HH
Confidence 3344444556789999999999999999998887 66677777777666677888999999988887765443332 22
Q ss_pred HHHHHHh-hcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC-h--hHHHHHHHHHHHHhhccCchhhhhh
Q 007918 164 LRSIYTQ-LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD-D--SVRLLAVEGCAALGKLLEPQDCVAH 239 (585)
Q Consensus 164 l~~~l~~-l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d-~--~vr~~a~~~l~~l~~~~~~~~~~~~ 239 (585)
+..++.. +-+||+.+||+.+..-+.. . +.-.|.+..-+.| + +-|..-..+++.++...... ..+.
T Consensus 170 ~~n~l~~~vqnDPS~EVRr~allni~v------d----nsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~ls-i~kr 238 (885)
T COG5218 170 IVNLLKDIVQNDPSDEVRRLALLNISV------D----NSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLS-IDKR 238 (885)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHeee------C----CCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhcc-ccce
Confidence 3334443 3478999999988654432 1 1233555555666 2 24445566777776654322 2333
Q ss_pred hHHHHHHhccCCChHHHHHHHHHHHH
Q 007918 240 ILPVIVNFSQDKSWRVRYMVANQLYE 265 (585)
Q Consensus 240 ~~~~l~~~~~d~~~~vR~~~~~~l~~ 265 (585)
++ ++.-.+.|.+..||.++...+..
T Consensus 239 i~-l~ewgl~dRe~sv~~a~~d~ia~ 263 (885)
T COG5218 239 IL-LMEWGLLDREFSVKGALVDAIAS 263 (885)
T ss_pred eh-hhhhcchhhhhhHHHHHHHHHHH
Confidence 33 55567788889999998887764
No 153
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=97.39 E-value=0.021 Score=60.16 Aligned_cols=265 Identities=12% Similarity=0.147 Sum_probs=124.7
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC---hhHHHHHHHHHHHHhhccCchhhhhh
Q 007918 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD---DSVRLLAVEGCAALGKLLEPQDCVAH 239 (585)
Q Consensus 163 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d---~~vr~~a~~~l~~l~~~~~~~~~~~~ 239 (585)
+++..+...+.+++..+...+...+..+...+.. .-.+.+..++.++... ...|.....++...+.. .
T Consensus 325 ~l~~~l~~~~~~~~~~~~~~~~~~f~~Lv~~lr~-l~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~--------~ 395 (618)
T PF01347_consen 325 ELLKELADLLEEPEDPVSKETLSKFSRLVRLLRT-LSYEDLEELYKQLKSKSKKEQARKIFLDALPQAGTN--------P 395 (618)
T ss_dssp HHHHHHHHHHHH-SSS--TTHHHHHHHHHHHHTT-S-HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SH--------H
T ss_pred HHHHHHHHHhhCcccccchhHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCH--------H
Confidence 4455555554333333444444445555554422 1223444555544443 44666666666665432 1
Q ss_pred hHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccC----ChHHHHHHHHHHHHHHHHhhCHH---
Q 007918 240 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD----NEAEVRIAAAGKVTKFCRILNPE--- 312 (585)
Q Consensus 240 ~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d----~~~~vr~~a~~~l~~l~~~~~~~--- 312 (585)
.+..+.+++....-.- ..+.+.+..+...... -...++..+..+++. .++.++..|+-+++.+.......
T Consensus 396 av~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~~--Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~ 472 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTD-DEAAQLLASLPFHVRR--PTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDS 472 (618)
T ss_dssp HHHHHHHHHHTT-S-H-HHHHHHHHHHHHT-------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHcCCCCH-HHHHHHHHHHHhhcCC--CCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccc
Confidence 2223333333321111 1233444444433211 123566666666654 34668888888888876543211
Q ss_pred ---------HHHHhhHHHHHHh----ccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCC---ChHHHHHH
Q 007918 313 ---------LAIQHILPCVKEL----SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE---FPDVRLNI 376 (585)
Q Consensus 313 ---------~~~~~i~~~l~~~----~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~---~~~vr~~a 376 (585)
...+.+++.+... .+..+...+..++++||+++. +..++.+...+.+. ...+|..|
T Consensus 473 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R~~A 544 (618)
T PF01347_consen 473 AEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--------PESIPVLLPYIEGKEEVPHFIRVAA 544 (618)
T ss_dssp --------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHH
T ss_pred cccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--------chhhHHHHhHhhhccccchHHHHHH
Confidence 1223444444333 334556777788888887752 34556666666655 56788888
Q ss_pred HHHhHHhhhhhchhHHhhhHHHHHHHHhcC--CChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHH
Q 007918 377 ISKLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAA 454 (585)
Q Consensus 377 ~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~--~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a 454 (585)
+.+|..+...... .+.+.+..++.| .+..+|.+|...+-.. -++ ...+..+...+-.+++.+|+...
T Consensus 545 i~Alr~~~~~~~~-----~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~---~~~l~~i~~~l~~E~~~QV~sfv 613 (618)
T PF01347_consen 545 IQALRRLAKHCPE-----KVREILLPIFMNTTEDPEVRIAAYLILMRC---NPS---PSVLQRIAQSLWNEPSNQVASFV 613 (618)
T ss_dssp HHTTTTGGGT-HH-----HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT---------HHHHHHHHHHHTT-S-HHHHHHH
T ss_pred HHHHHHHhhcCcH-----HHHHHHHHHhcCCCCChhHHHHHHHHHHhc---CCC---HHHHHHHHHHHhhCchHHHHHHH
Confidence 8888877543322 233333333332 3456888776655332 111 12222333333467777777766
Q ss_pred HHHH
Q 007918 455 ANNL 458 (585)
Q Consensus 455 ~~~l 458 (585)
...|
T Consensus 614 ~S~L 617 (618)
T PF01347_consen 614 YSHL 617 (618)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5554
No 154
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.38 E-value=0.12 Score=48.55 Aligned_cols=214 Identities=16% Similarity=0.160 Sum_probs=108.5
Q ss_pred HhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhh-----------H
Q 007918 363 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF-----------F 431 (585)
Q Consensus 363 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~-----------~ 431 (585)
..++..++.||..++.++|-.+- +..+. ....++.+...++..+..+|..++.++-.+....|... .
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~L-ld~~~-a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~ 111 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCL-LDKEL-AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVD 111 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHH-hChHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence 44455555555555555554442 12211 12334444443333455555555555555554444222 1
Q ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcC----cchHHHHHHHHHHHHhhhhcC--
Q 007918 432 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN----PHYLYRMTILRAISLLAPVMG-- 505 (585)
Q Consensus 432 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~----~~~~~R~~a~~~l~~l~~~~~-- 505 (585)
...+...+.+.+.+.+.++|..|++.++++.-...... .+.++..++-..-+ ++...|+....++...+....
T Consensus 112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~-~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~ 190 (298)
T PF12719_consen 112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD-PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPEN 190 (298)
T ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHH
Confidence 23466777788888888888888888888765321110 13455555444333 345667666666666554222
Q ss_pred hHHHHhcHHHHHHhhcCCCC----chHHHHHHHHHHHHHhhhch--------------HHHHhhHHHHHHHhcCCCCcc-
Q 007918 506 SEITCSRLLPVVINASKDRV----PNIKFNVAKVLQSLIPIVDQ--------------SMVEKTIRPCLVELTEDPDVD- 566 (585)
Q Consensus 506 ~~~~~~~i~~~l~~~l~d~~----~~vR~~~~~~l~~l~~~~~~--------------~~~~~~~~~~l~~l~~D~~~~- 566 (585)
...+.+.++|.+..+.+.+. +.-..........++....+ ..........+..+.+|+..+
T Consensus 191 Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~~~~~~~~~~~~~~~~~h~~La~~il~~i~~~~~~~~ 270 (298)
T PF12719_consen 191 QERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDPSKLVKESNQEIQNESVHVDLAIDILNEILSDPEKEK 270 (298)
T ss_pred HHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCChhhccCccccccccccHHHHHHHHHHHHHHhccccch
Confidence 22345666677666654432 22222233333333322211 122234556666666666555
Q ss_pred -HHHHHHHHHHHHH
Q 007918 567 -VRFFATQAIQSID 579 (585)
Q Consensus 567 -Vr~~a~~al~~l~ 579 (585)
.+..-.+++..+.
T Consensus 271 ~~~k~~~~~L~~L~ 284 (298)
T PF12719_consen 271 EERKALCKALSKLE 284 (298)
T ss_pred HHHHHHHHHHhccc
Confidence 6666666665543
No 155
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=97.35 E-value=0.086 Score=49.49 Aligned_cols=160 Identities=13% Similarity=0.207 Sum_probs=91.3
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHH---------
Q 007918 244 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA--------- 314 (585)
Q Consensus 244 l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~--------- 314 (585)
+......+++.+|..+++++|-.+- +.++. ..+.++.+...++..+..|+..|++++..+...+|.+.+
T Consensus 32 I~P~v~~~~~~vR~~al~cLGl~~L-ld~~~-a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~ 109 (298)
T PF12719_consen 32 ILPAVQSSDPAVRELALKCLGLCCL-LDKEL-AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDES 109 (298)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHH-hChHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCcc
Confidence 3356677778888888888886553 33322 234566666666555788888888888888877765421
Q ss_pred --HHhhHHHHHHhccCCcHHHHHHHHHHHHhhc--hhhCH-HHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhc-
Q 007918 315 --IQHILPCVKELSSDSSQHVRSALASVIMGMA--PLLGK-DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG- 388 (585)
Q Consensus 315 --~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~--~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~- 388 (585)
...+...+...+.+.++.+|..+++.+..+. ..+.. ......++-....--...+..+|+...-.+..++..-.
T Consensus 110 ~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~ 189 (298)
T PF12719_consen 110 VDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPE 189 (298)
T ss_pred chHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHH
Confidence 1345666777777778888888888888752 22232 22222222222211222344555544444444443222
Q ss_pred -hhHHhhhHHHHHHHHhc
Q 007918 389 -IDLLSQSLLPAIVELAE 405 (585)
Q Consensus 389 -~~~~~~~ll~~l~~~~~ 405 (585)
.+.+.+..+|.+..+.+
T Consensus 190 ~Q~~l~~~f~~~l~~~~~ 207 (298)
T PF12719_consen 190 NQERLAEAFLPTLRTLSN 207 (298)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 12233445565555443
No 156
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.35 E-value=0.25 Score=56.94 Aligned_cols=272 Identities=13% Similarity=0.128 Sum_probs=158.7
Q ss_pred hhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCc-c-----cccchHHHHHHhcc-CChHHHHHHHHHHHHHHHH
Q 007918 235 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-P-----TRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCR 307 (585)
Q Consensus 235 ~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~-~-----~~~~l~~~l~~ll~-d~~~~vr~~a~~~l~~l~~ 307 (585)
..+..+-+.+.+...+.+..++..++..|..++-.+-.. . ..++++..|...+. ..+.+||...++++..+..
T Consensus 1133 ~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~ 1212 (1780)
T PLN03076 1133 SIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVL 1212 (1780)
T ss_pred hHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 345556677777666666789999999988888655332 1 12356666665444 4457999999999998877
Q ss_pred hhCHHH--HHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhh-C---H--HHHHHhHHHHHHHhhcCC-ChHHHHHHHH
Q 007918 308 ILNPEL--AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL-G---K--DATIEQLLPIFLSLLKDE-FPDVRLNIIS 378 (585)
Q Consensus 308 ~~~~~~--~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~---~--~~~~~~l~~~l~~~l~d~-~~~vr~~a~~ 378 (585)
..+... --+.++..+.....++++.+-..+.+.+..+...+ + . ......++..+..+.+.. +.++-..|+.
T Consensus 1213 s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~ 1292 (1780)
T PLN03076 1213 SRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIA 1292 (1780)
T ss_pred HHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHH
Confidence 654331 11456666666667888877777777776664432 1 0 122233444444443322 2344444444
Q ss_pred HhHHhhhhh-----------------------------------chhHHhhhHHHHHHH---HhcCCChHHHHHHHHHhH
Q 007918 379 KLDQVNQVI-----------------------------------GIDLLSQSLLPAIVE---LAEDRHWRVRLAIIEYIP 420 (585)
Q Consensus 379 ~l~~l~~~~-----------------------------------~~~~~~~~ll~~l~~---~~~~~~~~~r~~~~~~l~ 420 (585)
.|..++..+ +.+.....++|.+.. +..|+...||..|+..+-
T Consensus 1293 lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF 1372 (1780)
T PLN03076 1293 FLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLF 1372 (1780)
T ss_pred HHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 444332211 011112345665554 467889999999999988
Q ss_pred HHHHhhChhh--------HHHHHHHHHHHHcc----------------------CCchHHHHHHHHHHHHHHHHhCHHH-
Q 007918 421 LLASQLGVGF--------FDDKLGALCMQWLQ----------------------DKVYSIRDAAANNLKRLAEEFGPEW- 469 (585)
Q Consensus 421 ~l~~~~~~~~--------~~~~l~~~l~~~l~----------------------d~~~~vr~~a~~~l~~l~~~~~~~~- 469 (585)
.+....|..+ +..-+.|++..+-. +...++......+|..++..+...+
T Consensus 1373 ~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd 1452 (1780)
T PLN03076 1373 DTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYP 1452 (1780)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777433 22334455432210 1122345555566666655444321
Q ss_pred ----HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcCh
Q 007918 470 ----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS 506 (585)
Q Consensus 470 ----~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~ 506 (585)
..+.++..+..++..++..+-..+..++..++...|.
T Consensus 1453 ~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~ 1493 (1780)
T PLN03076 1453 TVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGH 1493 (1780)
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhc
Confidence 2344444455556777888888888888888876554
No 157
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=97.28 E-value=0.049 Score=56.76 Aligned_cols=165 Identities=18% Similarity=0.195 Sum_probs=97.7
Q ss_pred hHHHHHHHHhcC----CChHHHHHHHHHhHHHHHhhC--h----hhHHHHHHHHHHH----HccCCchHHHHHHHHHHHH
Q 007918 395 SLLPAIVELAED----RHWRVRLAIIEYIPLLASQLG--V----GFFDDKLGALCMQ----WLQDKVYSIRDAAANNLKR 460 (585)
Q Consensus 395 ~ll~~l~~~~~~----~~~~~r~~~~~~l~~l~~~~~--~----~~~~~~l~~~l~~----~l~d~~~~vr~~a~~~l~~ 460 (585)
.++..+..++++ ++..+|..++-.++.+..... . ......+.+.+.. ...+.+.+.+..++++||+
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 456666666664 356788888888888876332 1 1122344444444 4445666777888888887
Q ss_pred HHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 007918 461 LAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 540 (585)
Q Consensus 461 l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~ 540 (585)
+.. ......+.|.+. .-.+....+|..|+.++..++...+.. ..+.+++.+.+- +.+++||.+|+..+-..-
T Consensus 473 ~g~----~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~-v~~~l~~i~~n~--~e~~EvRiaA~~~lm~t~ 544 (574)
T smart00638 473 AGH----PSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRK-VQEVLLPIYLNR--AEPPEVRMAAVLVLMETK 544 (574)
T ss_pred cCC----hhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHcCC--CCChHHHHHHHHHHHhcC
Confidence 633 212222233222 112335689999999999887655432 445555555332 347889998888777653
Q ss_pred hhhchHHHHhhHHHHHHH-hcCCCCccHHHHHHHH
Q 007918 541 PIVDQSMVEKTIRPCLVE-LTEDPDVDVRFFATQA 574 (585)
Q Consensus 541 ~~~~~~~~~~~~~~~l~~-l~~D~~~~Vr~~a~~a 574 (585)
+. . ..+..+.. +..|++..|+....-.
T Consensus 545 P~---~----~~l~~ia~~l~~E~~~QV~sfv~S~ 572 (574)
T smart00638 545 PS---V----ALLQRIAELLNKEPNLQVASFVYSH 572 (574)
T ss_pred CC---H----HHHHHHHHHHhhcCcHHHHHHhHHh
Confidence 22 1 23333333 5568888888766544
No 158
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.26 Score=49.94 Aligned_cols=464 Identities=13% Similarity=0.140 Sum_probs=237.6
Q ss_pred HHhhhhhchhhHHHHHHHHHHHHHHhhcChhhH-HhhHHHHHHHhhcCcCccchhhHHhhhHhhcC-CCChHHHHHHHHH
Q 007918 90 PLETLCTVEETCVRDKAVESLCRIGSQMRESDL-VDWYIPLVKRLAAGEWFTARVSACGLFHIAYP-SAPDILKTELRSI 167 (585)
Q Consensus 90 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~-~~~~~~~~~l~~~ 167 (585)
++...-+..+|.+--.+..+++....+++-.-+ .+..++++.++.. ....|.+||.++-.+.+ ++.+..+-.+++.
T Consensus 197 il~~y~n~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~ 274 (980)
T KOG2021|consen 197 ILKLYENIVNPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNM 274 (980)
T ss_pred HHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Confidence 333333444777777888888888887766544 3557777777666 45779999988766654 5566544444444
Q ss_pred HHhh-------cCC--CchHHHHHHHHhHHHHHhhhc-------c-------cc---hHHHHHHHHHHhccC--hhHHHH
Q 007918 168 YTQL-------CQD--DMPMVRRSAASNLGKFAATVE-------P-------AH---LKTDIMSIFEDLTQD--DSVRLL 219 (585)
Q Consensus 168 l~~l-------~~d--~~~~vr~~a~~~l~~l~~~~~-------~-------~~---~~~~l~~~l~~l~~d--~~vr~~ 219 (585)
+.+. ..| .++.+-....+.+..++..+. . +. ....+.|.+.+.+.+ |+.-..
T Consensus 275 L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ 354 (980)
T KOG2021|consen 275 LNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAK 354 (980)
T ss_pred HHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Confidence 4221 122 345554444444443332111 0 01 112244555565554 444443
Q ss_pred HHHHHHHHhhccCc---------hhhhhhhHHHHHHhccC------CC----------hHHHHHHHHHHHHHHHHhCCcc
Q 007918 220 AVEGCAALGKLLEP---------QDCVAHILPVIVNFSQD------KS----------WRVRYMVANQLYELCEAVGPEP 274 (585)
Q Consensus 220 a~~~l~~l~~~~~~---------~~~~~~~~~~l~~~~~d------~~----------~~vR~~~~~~l~~l~~~~~~~~ 274 (585)
....+......+.+ ......+...+.+++-| ++ .++|...-..+..++.. .++.
T Consensus 355 ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~~i-dpsl 433 (980)
T KOG2021|consen 355 IFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIVVI-DPSL 433 (980)
T ss_pred HHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHHhc-CHHH
Confidence 34333333222211 11122333444444422 11 13555443333333322 1121
Q ss_pred cccchHHHH---HHhccCChHHHHHHHHHHHHHHHHhhCHH------------HHHHhhHHHHH--HhccCCcHHHHHHH
Q 007918 275 TRMDLVPAY---VRLLRDNEAEVRIAAAGKVTKFCRILNPE------------LAIQHILPCVK--ELSSDSSQHVRSAL 337 (585)
Q Consensus 275 ~~~~l~~~l---~~ll~d~~~~vr~~a~~~l~~l~~~~~~~------------~~~~~i~~~l~--~~~~d~~~~vr~~a 337 (585)
....+-..+ ....+.++|..-+.|+..+..+++.+... .....+++.+. .....+++.|+-..
T Consensus 434 ~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlf 513 (980)
T KOG2021|consen 434 FLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLF 513 (980)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHH
Confidence 111122222 22335667888899999999888865422 12233444443 34567888898888
Q ss_pred HHHHHhhchhhCHHH-HHHhHHHHHH--HhhcCCChHHHHHHHHHhHHhhhhhchh--HHhhhHHHHHHHHhcCC----C
Q 007918 338 ASVIMGMAPLLGKDA-TIEQLLPIFL--SLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDR----H 408 (585)
Q Consensus 338 ~~~l~~l~~~~~~~~-~~~~l~~~l~--~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~~~~~----~ 408 (585)
.+.+.+..+.+..+. ..+.++..+. ..+.+.+..||.-|.--..++.+.+.+. .+.+.++..+.+++..+ |
T Consensus 514 mE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt~N 593 (980)
T KOG2021|consen 514 MELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTTIN 593 (980)
T ss_pred HHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCCcC
Confidence 888888766654322 2223333332 2455678999999999999988876543 23455666666655211 1
Q ss_pred --------hHHHHHHHHHhHHHHHh---------------hChhhHHHHHHHHHHHHccCCchHHHHH----HHHHHHHH
Q 007918 409 --------WRVRLAIIEYIPLLASQ---------------LGVGFFDDKLGALCMQWLQDKVYSIRDA----AANNLKRL 461 (585)
Q Consensus 409 --------~~~r~~~~~~l~~l~~~---------------~~~~~~~~~l~~~l~~~l~d~~~~vr~~----a~~~l~~l 461 (585)
..-..-..++++.+... +.+......+.+.-..+-+|....|..+ ++-+++.+
T Consensus 594 ~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~l 673 (980)
T KOG2021|consen 594 AQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTL 673 (980)
T ss_pred ccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 01111122222221110 0010111112222223345666555544 34556666
Q ss_pred HHHhCHH----------HHHhhhHHHHHhhhc--CcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHH
Q 007918 462 AEEFGPE----------WAMQHITPQVLEMIN--NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIK 529 (585)
Q Consensus 462 ~~~~~~~----------~~~~~ll~~l~~~l~--~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR 529 (585)
++.+... ......+..++-.+. .....+|.+.-.+++.++..+|++ ..+.+-..+..+++|.++.=-
T Consensus 674 akgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~-vlPfipklie~lL~s~d~kEm 752 (980)
T KOG2021|consen 674 AKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNK-VLPFIPKLIELLLSSTDLKEM 752 (980)
T ss_pred hhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchh-hhcchHHHHHHHHhcCCHHHH
Confidence 6543211 011223333333332 235678999999999999999976 335444455556777777655
Q ss_pred HHHHHHHHHHHhhhchH--HHHhhHHHHHH
Q 007918 530 FNVAKVLQSLIPIVDQS--MVEKTIRPCLV 557 (585)
Q Consensus 530 ~~~~~~l~~l~~~~~~~--~~~~~~~~~l~ 557 (585)
...+..+.++...+..+ .+.++.+|.|.
T Consensus 753 vdfl~flsQLihkfk~~~~~ilnqmlppll 782 (980)
T KOG2021|consen 753 VDFLGFLSQLIHKFKTDCYQILNQMLPPLL 782 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677776665443 34445444443
No 159
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.14 Score=57.44 Aligned_cols=232 Identities=15% Similarity=0.143 Sum_probs=146.0
Q ss_pred hhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcC-CChHHHHHHHHHhHHHHHh
Q 007918 347 LLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQ 425 (585)
Q Consensus 347 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~-~~~~~r~~~~~~l~~l~~~ 425 (585)
..|++.+...-...+...+...++-.|..+..+++.++...+...+...+...+.+-+.+ .++-.|..-.-+++.+-+.
T Consensus 867 ~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhky 946 (2067)
T KOG1822|consen 867 SLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKY 946 (2067)
T ss_pred ccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHh
Confidence 345555555555667777888899999999999999999998877666676666664444 5667788877888888877
Q ss_pred hChhhHHHH---HHHHHHHHccCCch-HHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhh-hcCcc--hHHHHHHHHH
Q 007918 426 LGVGFFDDK---LGALCMQWLQDKVY-SIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEM-INNPH--YLYRMTILRA 496 (585)
Q Consensus 426 ~~~~~~~~~---l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~-l~~~~--~~~R~~a~~~ 496 (585)
.|.-.-.++ -+..+..+.+|+.. .|+..++.++..+...-|+-+ +.+.-+..+..+ ++++. -.++.+.-.+
T Consensus 947 vgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~ 1026 (2067)
T KOG1822|consen 947 VGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRC 1026 (2067)
T ss_pred ccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccc
Confidence 653222222 34467777888877 999999999999887666543 123333333333 34442 3455554444
Q ss_pred HH------HhhhhcChHH-----------HHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHh
Q 007918 497 IS------LLAPVMGSEI-----------TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 559 (585)
Q Consensus 497 l~------~l~~~~~~~~-----------~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l 559 (585)
+. .+....|++. +....+-...-.+..+++.+..++.+++.++....+...-.+.+.+.+..+
T Consensus 1027 ~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~ 1106 (2067)
T KOG1822|consen 1027 FNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSL 1106 (2067)
T ss_pred cccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHH
Confidence 44 5555444321 122233333334455688899999999998866554444445666777665
Q ss_pred cCCCCccHHHHHHHHHHHH
Q 007918 560 TEDPDVDVRFFATQAIQSI 578 (585)
Q Consensus 560 ~~D~~~~Vr~~a~~al~~l 578 (585)
+..+---.|..+..++..+
T Consensus 1107 l~s~~~i~r~~~~~clrql 1125 (2067)
T KOG1822|consen 1107 LSSSYLILRRASFSCLRQL 1125 (2067)
T ss_pred hcchhhhhhhhHHhhhhHH
Confidence 5544444444444444444
No 160
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.63 Score=52.54 Aligned_cols=228 Identities=18% Similarity=0.202 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHH-HHHHhccC-hhH-HHHHHHHHHHHhhccC---
Q 007918 159 ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMS-IFEDLTQD-DSV-RLLAVEGCAALGKLLE--- 232 (585)
Q Consensus 159 ~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~-~l~~l~~d-~~v-r~~a~~~l~~l~~~~~--- 232 (585)
..+..-+.++...+..++|..|-.+..+++.++...+...+...+.. .+.++... |.+ |..-.-+++.+-+..+
T Consensus 872 ~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~ 951 (2067)
T KOG1822|consen 872 EVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIG 951 (2067)
T ss_pred HHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCC
Confidence 35566667777888888999999999999999998877665554444 45555444 444 4443445555544433
Q ss_pred chhhhhhhHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhCCccc--ccchHHHHHHh-ccCC--hHHHHHHHHHHHH---
Q 007918 233 PQDCVAHILPVIVNFSQDKSW-RVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRL-LRDN--EAEVRIAAAGKVT--- 303 (585)
Q Consensus 233 ~~~~~~~~~~~l~~~~~d~~~-~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~l-l~d~--~~~vr~~a~~~l~--- 303 (585)
.......-...+..+.+|+.. .|+..++..+..+....++... ....+..+..+ +.++ ..+|+...-+.+.
T Consensus 952 s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~ 1031 (2067)
T KOG1822|consen 952 SGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDD 1031 (2067)
T ss_pred CchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccch
Confidence 344455556677788888754 9999999999888876665331 11222222332 3333 3556665555555
Q ss_pred ---HHHHhhCHHH-----------HHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCC
Q 007918 304 ---KFCRILNPEL-----------AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF 369 (585)
Q Consensus 304 ---~l~~~~~~~~-----------~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~ 369 (585)
.+...+|++. +....+-...-++..+++.++.+++.++.++.-.-+.....+.+++.+..++....
T Consensus 1032 ~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~~ 1111 (2067)
T KOG1822|consen 1032 DEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSSY 1111 (2067)
T ss_pred hHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcchh
Confidence 6666555431 00111111112345568889999999998887666666667888888888888877
Q ss_pred hHHHHHHHHHhHHhhhh
Q 007918 370 PDVRLNIISKLDQVNQV 386 (585)
Q Consensus 370 ~~vr~~a~~~l~~l~~~ 386 (585)
--.|...+.++..+...
T Consensus 1112 ~i~r~~~~~clrql~~R 1128 (2067)
T KOG1822|consen 1112 LILRRASFSCLRQLVQR 1128 (2067)
T ss_pred hhhhhhHHhhhhHHhHH
Confidence 77777777777776653
No 161
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.19 E-value=0.073 Score=51.10 Aligned_cols=139 Identities=18% Similarity=0.273 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhcc------CCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhh
Q 007918 292 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS------DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL 365 (585)
Q Consensus 292 ~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l 365 (585)
..-|.+|+..+..+++..+... .+.+...+...+. ..+|+-+.+|+..++.++.......
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v-~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~------------- 290 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQV-TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTK------------- 290 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BT-------------
T ss_pred CCcHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhcccc-------------
Confidence 4578888999999988766542 1333333333332 4679999999999988865431100
Q ss_pred cCCChHHHHHHHHHhHHhhhhhc-hhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHcc
Q 007918 366 KDEFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ 444 (585)
Q Consensus 366 ~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 444 (585)
..| ..+...+. .+.+...++|-+. --.+..+-+|..+++.+..+...++++.+ ..++|.+.+++.
T Consensus 291 ----~Gv--------t~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l-~~~~~~l~~~L~ 356 (370)
T PF08506_consen 291 ----SGV--------TQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQL-LQIFPLLVNHLQ 356 (370)
T ss_dssp ----TB---------S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHH-HHHHHHHHHHTT
T ss_pred ----CCc--------ccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHH-HHHHHHHHHHhC
Confidence 000 00000000 1112234555554 22344555666677776666666655443 336777777777
Q ss_pred CCchHHHHHHHHHH
Q 007918 445 DKVYSIRDAAANNL 458 (585)
Q Consensus 445 d~~~~vr~~a~~~l 458 (585)
+++.-|+..|+.++
T Consensus 357 ~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 357 SSSYVVHTYAAIAI 370 (370)
T ss_dssp SS-HHHHHHHHHHH
T ss_pred CCCcchhhhhhhhC
Confidence 77777776666543
No 162
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=97.16 E-value=0.072 Score=55.52 Aligned_cols=152 Identities=16% Similarity=0.041 Sum_probs=85.5
Q ss_pred CChHHHHHHHHHhHHhhhhhch------hHHhhhHHHHHHHHh----cCCChHHHHHHHHHhHHHHHhhChhhHHHHHHH
Q 007918 368 EFPDVRLNIISKLDQVNQVIGI------DLLSQSLLPAIVELA----EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 437 (585)
Q Consensus 368 ~~~~vr~~a~~~l~~l~~~~~~------~~~~~~ll~~l~~~~----~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~ 437 (585)
.++.+|..++-+++.+....-. ....+.+.|.+...+ .+.+...+..++.+|+.+ |.......+.|
T Consensus 409 ~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~----g~~~~i~~l~~ 484 (574)
T smart00638 409 KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA----GHPSSIKVLEP 484 (574)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc----CChhHHHHHHH
Confidence 3568888888888888753321 111234455544433 345555667777777654 33222233444
Q ss_pred HHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCc--chHHHHHHHHHHHHhhhhcChHHHHhcHHH
Q 007918 438 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEITCSRLLP 515 (585)
Q Consensus 438 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~--~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~ 515 (585)
.+. .-.+....+|.+|+.+|..+...... .+.+.+...+.+. +..+|.+|+..+-..-+ .. ..+-.
T Consensus 485 ~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~-----~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P---~~---~~l~~ 552 (574)
T smart00638 485 YLE-GAEPLSTFIRLAAILALRNLAKRDPR-----KVQEVLLPIYLNRAEPPEVRMAAVLVLMETKP---SV---ALLQR 552 (574)
T ss_pred hcC-CCCCCCHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC---CH---HHHHH
Confidence 433 12234568999999999988764332 3455555555543 57799999988755422 21 12222
Q ss_pred HHHhhcCCCCchHHHHHHHH
Q 007918 516 VVINASKDRVPNIKFNVAKV 535 (585)
Q Consensus 516 ~l~~~l~d~~~~vR~~~~~~ 535 (585)
+....-.+++..|+..+...
T Consensus 553 ia~~l~~E~~~QV~sfv~S~ 572 (574)
T smart00638 553 IAELLNKEPNLQVASFVYSH 572 (574)
T ss_pred HHHHHhhcCcHHHHHHhHHh
Confidence 22233346678887655443
No 163
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.10 E-value=0.024 Score=59.10 Aligned_cols=208 Identities=14% Similarity=0.179 Sum_probs=136.0
Q ss_pred HHHHHHHHHhhchhhCHHHH----HHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhc---hhHHhhhHHHHHHHHhcC
Q 007918 334 RSALASVIMGMAPLLGKDAT----IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAED 406 (585)
Q Consensus 334 r~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~ll~~l~~~~~~ 406 (585)
|..|...|+.|... |+.-+ .--|+|+++++|+.+-.+.|-..+--..++...=. .+.+++.-...+...+.+
T Consensus 487 RlRAL~LL~RFLDl-GpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 487 RLRALVLLARFLDL-GPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHhcc-chhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 44555666665432 22111 12478999999999988888776655555542211 011111000111111222
Q ss_pred ---CChHHHHHHHHHhHHHHHhhC---hhhHHHHHHHHHHHHccCC-chHHHHHHHHHHHHHHHHhCHHHH---HhhhHH
Q 007918 407 ---RHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFGPEWA---MQHITP 476 (585)
Q Consensus 407 ---~~~~~r~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~---~~~ll~ 476 (585)
-+.+.|..++..+..+...+. ...+...++.+++..+.|+ .+-.|.-.+-+||.+-+.+....+ ......
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahe 645 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHE 645 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHH
Confidence 235788888888888887653 3445566888888888885 789999999999999887665432 245566
Q ss_pred HHHhhhcCcchHHHHHHHHHHHHhhhhc----ChH--------------HHHhcHHH----HHHhhcCCCCchHHHHHHH
Q 007918 477 QVLEMINNPHYLYRMTILRAISLLAPVM----GSE--------------ITCSRLLP----VVINASKDRVPNIKFNVAK 534 (585)
Q Consensus 477 ~l~~~l~~~~~~~R~~a~~~l~~l~~~~----~~~--------------~~~~~i~~----~l~~~l~d~~~~vR~~~~~ 534 (585)
.+...+.|+...||.+|+.+++.+..+. ... ...+...+ .++..++|..+-||..+..
T Consensus 646 kL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v 725 (1387)
T KOG1517|consen 646 KLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVV 725 (1387)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHH
Confidence 7778899999999999999999998753 111 00222233 6777889999999999999
Q ss_pred HHHHHHhh
Q 007918 535 VLQSLIPI 542 (585)
Q Consensus 535 ~l~~l~~~ 542 (585)
++.+++..
T Consensus 726 ~ls~~~~g 733 (1387)
T KOG1517|consen 726 ALSHFVVG 733 (1387)
T ss_pred HHHHHHHh
Confidence 99887654
No 164
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.04 E-value=0.64 Score=49.91 Aligned_cols=151 Identities=15% Similarity=0.169 Sum_probs=113.5
Q ss_pred hhCHHHHHHhHHHHHHHhhcC----CChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhc-CCChHHHHHHHHHhHH
Q 007918 347 LLGKDATIEQLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPL 421 (585)
Q Consensus 347 ~~~~~~~~~~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~-~~~~~~r~~~~~~l~~ 421 (585)
..|+......+.|++....+. ++|+++.+|--+|+.+...- .+ +-+.-+|.+...++ ++++.+|..++-.++.
T Consensus 910 l~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS-a~-fces~l~llftimeksp~p~IRsN~VvalgD 987 (1251)
T KOG0414|consen 910 LYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS-AE-FCESHLPLLFTIMEKSPSPRIRSNLVVALGD 987 (1251)
T ss_pred hcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh-HH-HHHHHHHHHHHHHhcCCCceeeecchheccc
Confidence 346566778889999888843 46889999999999887532 22 23566788888775 8899999999888888
Q ss_pred HHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhh
Q 007918 422 LASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLA 501 (585)
Q Consensus 422 l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~ 501 (585)
++-.++. +.+...+.++..+.|++..||..|+..+..+.-+- -.-.+..++.+..++.|++..+|.-|=.++..+.
T Consensus 988 lav~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd--miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 988 LAVRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILND--MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred hhhhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh--hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 7755543 23445778888999999999999999998887531 1123567888888899999999999988887776
Q ss_pred hh
Q 007918 502 PV 503 (585)
Q Consensus 502 ~~ 503 (585)
..
T Consensus 1064 ~k 1065 (1251)
T KOG0414|consen 1064 SK 1065 (1251)
T ss_pred hc
Confidence 53
No 165
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.03 E-value=0.045 Score=57.25 Aligned_cols=173 Identities=15% Similarity=0.087 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHHhhccCch---hhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHh---CCcccccchHHHHHHhcc
Q 007918 215 SVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV---GPEPTRMDLVPAYVRLLR 288 (585)
Q Consensus 215 ~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~ll~ 288 (585)
-.|..|+..|+.+...-+=. ...--|+|++.++++.+-.+.|-..+-...+|...= ..+...+.-..+|.+.+.
T Consensus 485 vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~ 564 (1387)
T KOG1517|consen 485 VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLD 564 (1387)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEec
Confidence 46778888888877642211 122348999999999999999998888877765431 111222222223444444
Q ss_pred C-C--hHHHHHHHHHHHHHHHHhhCH--HH-HHHhhHHHHHHhccC-CcHHHHHHHHHHHHhhchhhCHHHHH---HhHH
Q 007918 289 D-N--EAEVRIAAAGKVTKFCRILNP--EL-AIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLGKDATI---EQLL 358 (585)
Q Consensus 289 d-~--~~~vr~~a~~~l~~l~~~~~~--~~-~~~~i~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~ 358 (585)
+ . +++-|..++..|..++..+.. +. +...++..-...++| +.|-.|.-++-+|+.+=+.+....+. ....
T Consensus 565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH 644 (1387)
T ss_pred CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence 4 2 257888999999999886542 21 123445544566677 47999999999999986655543321 1223
Q ss_pred HHHHHhhcCCChHHHHHHHHHhHHhhhhh
Q 007918 359 PIFLSLLKDEFPDVRLNIISKLDQVNQVI 387 (585)
Q Consensus 359 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 387 (585)
.-+...+.|+.++||.+|+-+|+.+....
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 34566789999999999999999998753
No 166
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=97.00 E-value=1.3 Score=52.63 Aligned_cols=530 Identities=16% Similarity=0.172 Sum_probs=252.8
Q ss_pred CcccHHHHHHHhcChhHHHHHHHhhhHHHHHHhhCh--------hhhhhhccccccc--ccCCchHHHHHHHHHHh-ccc
Q 007918 7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGE--------ERTRKELIPFLSE--NNDDDDEVLLAMAEELG-VFI 75 (585)
Q Consensus 7 ~~~~i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~--------~~~~~~l~~~l~~--~~d~~~~vr~~~~~~l~-~l~ 75 (585)
++++-..+-..+...|.+.|..+...+..+...... -.+.+..+..+.. ..|.++.+|.++...+. .+.
T Consensus 479 ~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~~~~~ 558 (2341)
T KOG0891|consen 479 TLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLNERFD 558 (2341)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhccchh
Confidence 334444455667788999999997666655443211 0113334444444 56778888888877775 343
Q ss_pred cccCCcchHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhh--------cCcCccchhhHHh
Q 007918 76 PYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA--------AGEWFTARVSACG 147 (585)
Q Consensus 76 ~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~--------~~~~~~~r~~a~~ 147 (585)
+.+..+.. +..+...+.++.-.++.++...++.++...+ .+++|.+.... .+....+...++.
T Consensus 559 ~~laQ~~~----lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~-----a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~ 629 (2341)
T KOG0891|consen 559 AQLAQPDL----LRLLFIALHDENFAIQELATVIIGRLSSYNP-----AYVLPSLRKTLLELLTELEFSGMARTKEESAK 629 (2341)
T ss_pred hhhcCchh----HHHHHHHhhhhhhhhHHhHHhhccccccccH-----HHHhHHHHHHHHHHhchhhhcchHHhHHHHHH
Confidence 43443332 3334445568888888888888888776554 33444443211 1111111222222
Q ss_pred hhHhhcCCCC---hHHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcc--cchHHHHHHHHHHhccC---hhHHHH
Q 007918 148 LFHIAYPSAP---DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQD---DSVRLL 219 (585)
Q Consensus 148 ~l~~~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d---~~vr~~ 219 (585)
.++.+..... ..+...++..+...+.+++..+-+.+...++.++...+. ....+.+++.+.+...| ..-|..
T Consensus 630 ~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~a 709 (2341)
T KOG0891|consen 630 LLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLA 709 (2341)
T ss_pred HhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhH
Confidence 2222221111 123344455556666788888999999999999987763 22334777777777777 337788
Q ss_pred HHHHHHHHhhccCc----hhhhhhhHHHHHH-hccCCChHHHHHHHHHHHHHHHHhCCcccccchHHH---HHHhccCCh
Q 007918 220 AVEGCAALGKLLEP----QDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA---YVRLLRDNE 291 (585)
Q Consensus 220 a~~~l~~l~~~~~~----~~~~~~~~~~l~~-~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~---l~~ll~d~~ 291 (585)
+..+++++.+.-+- -...+.++..+.. ....-...+|..+.+.++..+..-+. ....... .........
T Consensus 710 slk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~~---~~~~~~~~~~~~~~~~~~k 786 (2341)
T KOG0891|consen 710 ALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDPY---KHKVTEGTSASKISSEQIK 786 (2341)
T ss_pred HHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccchh---HHHHHhhhhhHhhhhcccc
Confidence 88888888765332 1123334444443 44445667888888888844322110 0000000 111111111
Q ss_pred HHH-HHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHH-HHHHHHHHhhchhhCH--HHHHHhHHHHHHHhhcC
Q 007918 292 AEV-RIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVR-SALASVIMGMAPLLGK--DATIEQLLPIFLSLLKD 367 (585)
Q Consensus 292 ~~v-r~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr-~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d 367 (585)
+.. +... ..+..... .+.+.-..+-.+...+.|+.-... ...+.+...+....|. ..+.+.+.|.+......
T Consensus 787 ~~~~~~~~--~~~~~~~~--~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~r~ 862 (2341)
T KOG0891|consen 787 SDIDISLL--ESGVNPSN--DEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVMRS 862 (2341)
T ss_pred ccchHHHH--Hhhhhhhh--hhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHHHh
Confidence 100 0000 00000000 000000001122222233221111 1111111111111111 12334444444333322
Q ss_pred CChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChH---HHHHHHHHhHHHHHhhChhhHHHHH---HHHHHH
Q 007918 368 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR---VRLAIIEYIPLLASQLGVGFFDDKL---GALCMQ 441 (585)
Q Consensus 368 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~---~r~~~~~~l~~l~~~~~~~~~~~~l---~~~l~~ 441 (585)
..+..+.....-++...-..... . ..+++.+..+..+-+|. +.......+..+...++.++ ...+ .+..+.
T Consensus 863 ~~~~~~~f~~~q~~~~~~~~~~h-~-~~~~~~i~~~i~~~~~~~~~l~~~~~~l~~~i~~~l~~~f-~~~l~~~~~~~l~ 939 (2341)
T KOG0891|consen 863 CPPNLREFYFQQLTSLVAIVRQH-I-RPYMESIFTLIKDFWPPDTSLQITIISLIEDIAVALGGEF-KKYLPELLPTMLT 939 (2341)
T ss_pred cCcchhHHHHHhhhhhhhccchh-H-hhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHH-HHhhhhhccchhe
Confidence 22222222222222211111111 1 11333333444433332 22222333333333333322 2211 111111
Q ss_pred HccCCchHHHHHHHHHHHHHHHHh-CHHHHHhhhHHHHHhhhcCc--chHHHHHHHHHHHHhhhhcChHHHHhcHHHHHH
Q 007918 442 WLQDKVYSIRDAAANNLKRLAEEF-GPEWAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEITCSRLLPVVI 518 (585)
Q Consensus 442 ~l~d~~~~vr~~a~~~l~~l~~~~-~~~~~~~~ll~~l~~~l~~~--~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~ 518 (585)
.........|......+..+...- +.+.....+.|.+++++.++ ....|..+....+.+........+...+...+.
T Consensus 940 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~hl~~~~~vkl~~~~~~~~~~~~~~l~t~~~l~~~~~~~~~~s~i~~~~~ 1019 (2341)
T KOG0891|consen 940 VLQHDKSKDRVVSRKVLQSLQKFGSNLEQYLHLLLPPIVKLFEDPTVPLSIRKSALITIGRLAQQVDLSEYASRIIHPLV 1019 (2341)
T ss_pred eecccccchHHHHHHhhHHHHhcCccHHhhHhhhccHHHHHHhhhhhhHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 111112222222222222222211 11223346778888888887 578999999999999887766666677777777
Q ss_pred hhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHH
Q 007918 519 NASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVE 558 (585)
Q Consensus 519 ~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~ 558 (585)
..+... ++++..+...++.+....+... ..+.|++..
T Consensus 1020 r~l~~s-~el~~~~~~~l~~l~~~~~~~~--~i~~p~~~~ 1056 (2341)
T KOG0891|consen 1020 RVLSSS-PELRDVIMDTLIALVKQLGKDF--AIFIPMVNK 1056 (2341)
T ss_pred Hhhccc-hhHHHHHHHHHHHHHHhhcCce--eehHHHHHH
Confidence 777776 9999999999999887766542 244555553
No 167
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.54 Score=48.17 Aligned_cols=182 Identities=15% Similarity=0.225 Sum_probs=112.7
Q ss_pred HHhhhHHHHHHHHhcCCC-hHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCC-chHHHHHHHHHHHHHHHH--hC
Q 007918 391 LLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEE--FG 466 (585)
Q Consensus 391 ~~~~~ll~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~--~~ 466 (585)
++.+.++|.+. ....+ .-.|...+..++.++..--+....+.+-..+.++++|. +.-||.+++.++..+... +.
T Consensus 484 Wl~~~llpEl~--~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~ 561 (978)
T KOG1993|consen 484 WLQEALLPELA--NDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFS 561 (978)
T ss_pred HHHHhhCHHhh--hcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCC
Confidence 44455666654 22233 34788888888888764444444555566678889988 788999999999998873 23
Q ss_pred HHHHH---hhhHHHHHhhhcC-cchHHHHHHHHHHHHhhhhcChHH--H---HhcHHHHHHhhcCCCCchHHHHHHHHHH
Q 007918 467 PEWAM---QHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGSEI--T---CSRLLPVVINASKDRVPNIKFNVAKVLQ 537 (585)
Q Consensus 467 ~~~~~---~~ll~~l~~~l~~-~~~~~R~~a~~~l~~l~~~~~~~~--~---~~~i~~~l~~~l~d~~~~vR~~~~~~l~ 537 (585)
++.|. +.+...+..++.. .....|...+..++.++...+.-. + .-.++|.+.+..+ +.+-.|.+.+.++.
T Consensus 562 ~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~ 640 (978)
T KOG1993|consen 562 EDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCALLATLR 640 (978)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHH
Confidence 33332 2222233333332 345678888888888776544321 1 2344566665554 57889999999999
Q ss_pred HHHhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHH
Q 007918 538 SLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAI 575 (585)
Q Consensus 538 ~l~~~~~~~--~~~~~~~~~l~~l~~D~~~~Vr~~a~~al 575 (585)
+++..+|.+ .+.+.+.|++.....=..++-.+....++
T Consensus 641 ~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgm 680 (978)
T KOG1993|consen 641 NLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGM 680 (978)
T ss_pred HHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHH
Confidence 999888764 45566777776644322333333333333
No 168
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.12 Score=47.85 Aligned_cols=174 Identities=13% Similarity=0.039 Sum_probs=106.9
Q ss_pred CChHHHHHHHHHhHHHHHhhChh--hHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHH---HHHhhhHHHHHhh
Q 007918 407 RHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEM 481 (585)
Q Consensus 407 ~~~~~r~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~~ 481 (585)
.+.+-+..+++-+..+++.+... ...-..++.+...+++.+.++|..|+..++..+++...- .+....++.++..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 45667778888888877766432 222223444555889999999999999999998875542 2234466777766
Q ss_pred hc-CcchHHHHHHHHHHHHhhhhcChHH--H-HhcHHHHHHhhcCCC--CchHHHHHHHHHHHHHhhhchH--HHHhhHH
Q 007918 482 IN-NPHYLYRMTILRAISLLAPVMGSEI--T-CSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQS--MVEKTIR 553 (585)
Q Consensus 482 l~-~~~~~~R~~a~~~l~~l~~~~~~~~--~-~~~i~~~l~~~l~d~--~~~vR~~~~~~l~~l~~~~~~~--~~~~~~~ 553 (585)
++ +.+..+|..|+.+++.++.+..+.. | .-.=+..|...++++ +...+..++..+..+...-... ......+
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 64 4456788999999999998765432 2 222256677777774 5555666777777776543221 2222222
Q ss_pred HH-HHHhcCCCCccHHHHHHHHHHHHHH
Q 007918 554 PC-LVELTEDPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 554 ~~-l~~l~~D~~~~Vr~~a~~al~~l~~ 580 (585)
+. +..+..--+.+++..+..++-..-.
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 22 2224444466666666666554433
No 169
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.29 Score=44.19 Aligned_cols=56 Identities=25% Similarity=0.290 Sum_probs=39.5
Q ss_pred CCCchHHHHHHHHHHHHHhhhch-HH-HHhhHHHHHHHh-cCCCCccHHHHHHHHHHHH
Q 007918 523 DRVPNIKFNVAKVLQSLIPIVDQ-SM-VEKTIRPCLVEL-TEDPDVDVRFFATQAIQSI 578 (585)
Q Consensus 523 d~~~~vR~~~~~~l~~l~~~~~~-~~-~~~~~~~~l~~l-~~D~~~~Vr~~a~~al~~l 578 (585)
+++|.+|...+.++..++.+-.+ +. ....+.|.+..+ ...+++++|....+....+
T Consensus 255 epdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~L 313 (353)
T KOG2973|consen 255 EPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQML 313 (353)
T ss_pred CCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 56899999999999999765433 33 334577888875 4567888877665555444
No 170
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.86 E-value=0.45 Score=50.95 Aligned_cols=130 Identities=17% Similarity=0.122 Sum_probs=100.3
Q ss_pred cCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHh---C-HHHHHhhhHHHHHh
Q 007918 405 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF---G-PEWAMQHITPQVLE 480 (585)
Q Consensus 405 ~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~-~~~~~~~ll~~l~~ 480 (585)
.|-.+.+|..++..++.+.+.++.-++....+.++...|.|.+.+||...+++|..+...- + .+.|...+-..+++
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVe 376 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVE 376 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999988889999999999999999999999999998761 1 23355667777887
Q ss_pred hh-cCcchHHHHHHHHHHHHhhh--hcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHH
Q 007918 481 MI-NNPHYLYRMTILRAISLLAP--VMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 539 (585)
Q Consensus 481 ~l-~~~~~~~R~~a~~~l~~l~~--~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l 539 (585)
+. .|-+..||..++..+..... .+.. .=.-.+..++-|.++.++.++...+..-
T Consensus 377 Madrd~~~~Vrav~L~~~~~~~~~g~L~d-----~di~~Vy~Li~d~~r~~~~aa~~fl~~k 433 (1048)
T KOG2011|consen 377 MADRDRNVSVRAVGLVLCLLLSSSGLLSD-----KDILIVYSLIYDSNRRVAVAAGEFLYKK 433 (1048)
T ss_pred HHhhhcchhHHHHHHHHHHHHhcccccCh-----hHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 77 56678888888877655532 2222 2233455566678888888888777553
No 171
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.72 E-value=0.11 Score=55.70 Aligned_cols=219 Identities=19% Similarity=0.139 Sum_probs=129.2
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHH--------hc----cCCh-HHHHHHHHHHHHHHHHhhC
Q 007918 244 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR--------LL----RDNE-AEVRIAAAGKVTKFCRILN 310 (585)
Q Consensus 244 l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~--------ll----~d~~-~~vr~~a~~~l~~l~~~~~ 310 (585)
+....-++.|.+|+.+...+..+.+..++......+-..+.. .+ .|+- ..||.++++.|+.+.+...
T Consensus 82 L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~~ 161 (1549)
T KOG0392|consen 82 LVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHMD 161 (1549)
T ss_pred HHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhhh
Confidence 344455678888888888888887776665443222111111 12 2222 4799999999999998876
Q ss_pred HHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCH--HHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhc
Q 007918 311 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 388 (585)
Q Consensus 311 ~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 388 (585)
...+ ...+..+..++..++|++|..-...+......... ....+.+++.+...+.|++.+||..|++.+-.+.....
T Consensus 162 ~s~~-~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~v 240 (1549)
T KOG0392|consen 162 ESLI-KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQV 240 (1549)
T ss_pred hHhh-HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHHH
Confidence 6543 56677777888888999988777666554432211 13456778888899999999999999998877766552
Q ss_pred h---hHHhhhHHHHHHHHh---cCCCh---HHHHHHHHHhHHH-HHhhC-hhhHHHHHHHHHHHHccCCchHHHHHHHHH
Q 007918 389 I---DLLSQSLLPAIVELA---EDRHW---RVRLAIIEYIPLL-ASQLG-VGFFDDKLGALCMQWLQDKVYSIRDAAANN 457 (585)
Q Consensus 389 ~---~~~~~~ll~~l~~~~---~~~~~---~~r~~~~~~l~~l-~~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 457 (585)
. +.+ ..++..+-..+ .|-.| ..|....+.+... ...++ .......+.|-+..++...-..||.++++.
T Consensus 241 ~l~~~~i-~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~ 319 (1549)
T KOG0392|consen 241 KLMVQKI-AKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRAALET 319 (1549)
T ss_pred hhhHhHH-HHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHH
Confidence 1 111 12222222211 12222 1222222211111 00000 001112355666666677777889999988
Q ss_pred HHHHHHH
Q 007918 458 LKRLAEE 464 (585)
Q Consensus 458 l~~l~~~ 464 (585)
+..+.+.
T Consensus 320 l~~lle~ 326 (1549)
T KOG0392|consen 320 LAMLLEA 326 (1549)
T ss_pred HHHHHhc
Confidence 8888764
No 172
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=96.69 E-value=0.13 Score=55.24 Aligned_cols=173 Identities=10% Similarity=0.030 Sum_probs=108.1
Q ss_pred hHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhCh--hhHHHHHHHHHHHHccCCc
Q 007918 370 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLQDKV 447 (585)
Q Consensus 370 ~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~ 447 (585)
..||++++++|+.+.+......+ ...+..+.+++..++|++|.+.+..+......... ..+...+++.+...+.|.+
T Consensus 143 apVre~caq~L~~~l~~~~~s~~-~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ 221 (1549)
T KOG0392|consen 143 APVREACAQALGAYLKHMDESLI-KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSD 221 (1549)
T ss_pred hhhHHHHHHHHHHHHHhhhhHhh-HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 47999999999999988766655 45777888888888999999888777765542221 1233456777888899999
Q ss_pred hHHHHHHHHHHHHHHHHhCHH--HHHhhhHHHHHhhhc------CcchHHHHHHHHHHHHh-hhhcChHH-HHhcHHHHH
Q 007918 448 YSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMIN------NPHYLYRMTILRAISLL-APVMGSEI-TCSRLLPVV 517 (585)
Q Consensus 448 ~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~l~------~~~~~~R~~a~~~l~~l-~~~~~~~~-~~~~i~~~l 517 (585)
..||..|...+.......... .-...++..+...+. .+...+|.-....+... ...+.... ....+.|.+
T Consensus 222 ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~ 301 (1549)
T KOG0392|consen 222 DDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRL 301 (1549)
T ss_pred hHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhh
Confidence 999999999887776654111 011223333333221 12223333222222211 01111111 123566777
Q ss_pred HhhcCCCCchHHHHHHHHHHHHHhhh
Q 007918 518 INASKDRVPNIKFNVAKVLQSLIPIV 543 (585)
Q Consensus 518 ~~~l~d~~~~vR~~~~~~l~~l~~~~ 543 (585)
...+.+....+|.+++..+..+.+.-
T Consensus 302 ~p~l~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 302 WPFLRHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77777778889999999888887653
No 173
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=96.58 E-value=0.63 Score=43.24 Aligned_cols=179 Identities=17% Similarity=0.147 Sum_probs=130.7
Q ss_pred HHHHHHHhhcCC-ChHHHHHHHHHhHHhhhhhchhHHhh---hHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHH
Q 007918 357 LLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQ---SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD 432 (585)
Q Consensus 357 l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~---~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~ 432 (585)
+...+.++++-. -..|...|++....+.+.+|.+.+.+ .+.|.+..++....-.+|-..++.+....-.+|. ...
T Consensus 55 v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~ 133 (307)
T PF04118_consen 55 VSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALR 133 (307)
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHH
Confidence 334445555533 35899999999999999999876543 4567788888888889999999998887766666 444
Q ss_pred HHHHHH---HHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcC----
Q 007918 433 DKLGAL---CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---- 505 (585)
Q Consensus 433 ~~l~~~---l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~---- 505 (585)
+.+.++ +...++|++.++-..+...+..+....|.+.|...+.-.+. .++.+|..|+..+..-.....
T Consensus 134 p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~ 208 (307)
T PF04118_consen 134 PCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDEL 208 (307)
T ss_pred HHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCccccccc
Confidence 434444 44456889999999999999999999998865554444444 556789999988876655433
Q ss_pred --hHH----H----HhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 007918 506 --SEI----T----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 541 (585)
Q Consensus 506 --~~~----~----~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~ 541 (585)
... . ..-+...+...++|++--|+..++..+..-.+
T Consensus 209 ~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P 254 (307)
T PF04118_consen 209 SLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFP 254 (307)
T ss_pred ccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence 100 0 23456788889999999999999999887654
No 174
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.56 E-value=0.07 Score=45.06 Aligned_cols=125 Identities=20% Similarity=0.223 Sum_probs=63.5
Q ss_pred HHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCc--chHHHHHHHHHHHHhhhhcChHHHHhcHHH
Q 007918 438 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEITCSRLLP 515 (585)
Q Consensus 438 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~--~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~ 515 (585)
++.-++.|++..||.+|+.++..+...... ++. .-- -.+.+ ++. ..-..++.+. ..+-.
T Consensus 44 Llt~il~Dp~~kvR~aA~~~l~~lL~gsk~-~L~-----~Ae-~~~~~~~sFt---slS~tLa~~i---------~~lH~ 104 (182)
T PF13251_consen 44 LLTCILKDPSPKVRAAAASALAALLEGSKP-FLA-----QAE-ESKGPSGSFT---SLSSTLASMI---------MELHR 104 (182)
T ss_pred hhHHHHcCCchhHHHHHHHHHHHHHHccHH-HHH-----HHH-hcCCCCCCcc---cHHHHHHHHH---------HHHHH
Confidence 344466899999999999999998774211 110 000 00000 000 0001111111 11112
Q ss_pred HHHhhcC-CCCchHHHHHHHHHHHHHhhhch----HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 007918 516 VVINASK-DRVPNIKFNVAKVLQSLIPIVDQ----SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 581 (585)
Q Consensus 516 ~l~~~l~-d~~~~vR~~~~~~l~~l~~~~~~----~~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~~ 581 (585)
.|+..+. ..++.+-..+++++..+++..+- ..+...+...+..+..+.|++||..+.-+++.+..+
T Consensus 105 ~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 105 GLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 2222222 23455555666666666655432 245566666666666667777777777777666543
No 175
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.54 E-value=0.043 Score=46.33 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=21.6
Q ss_pred hhhcCcchHHHHHHHHHHHHhhhhc
Q 007918 480 EMINNPHYLYRMTILRAISLLAPVM 504 (585)
Q Consensus 480 ~~l~~~~~~~R~~a~~~l~~l~~~~ 504 (585)
-.+.|++..+|.+|+.++..+.++.
T Consensus 47 ~il~Dp~~kvR~aA~~~l~~lL~gs 71 (182)
T PF13251_consen 47 CILKDPSPKVRAAAASALAALLEGS 71 (182)
T ss_pred HHHcCCchhHHHHHHHHHHHHHHcc
Confidence 3578999999999999999998754
No 176
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.53 E-value=1.1 Score=45.20 Aligned_cols=138 Identities=12% Similarity=0.072 Sum_probs=72.1
Q ss_pred hHHHHHHhccC-ChHHHHHHHHHHHHHHHH--hhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHH
Q 007918 279 LVPAYVRLLRD-NEAEVRIAAAGKVTKFCR--ILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE 355 (585)
Q Consensus 279 l~~~l~~ll~d-~~~~vr~~a~~~l~~l~~--~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 355 (585)
++..+..++.. .+...-..++..+..+.. .++.+. ...++..+....+.. .....+-+.+.++++........
T Consensus 177 lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~s-l~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~~~i- 252 (464)
T PF11864_consen 177 LVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSES-LSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGHSAI- 252 (464)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHH-HHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHHHHH-
Confidence 44444444332 223444677777777765 233332 244555555543322 44444555555655433222222
Q ss_pred hHHHHHHHhhc------CCChHHHHHHHHHhHHhhhhhchhHH----h--hhHHHHHHHHhcCCChHHHHHHHHHhHHHH
Q 007918 356 QLLPIFLSLLK------DEFPDVRLNIISKLDQVNQVIGIDLL----S--QSLLPAIVELAEDRHWRVRLAIIEYIPLLA 423 (585)
Q Consensus 356 ~l~~~l~~~l~------d~~~~vr~~a~~~l~~l~~~~~~~~~----~--~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~ 423 (585)
..+...+. ..+..+-.+|+..++.+.-..|.+.+ . ..++|.+...++..+..+-..++..+..+.
T Consensus 253 ---~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 253 ---RTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred ---HHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 33334441 22345566788887777655433321 1 237888888777777776666666666555
No 177
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=96.49 E-value=0.74 Score=43.05 Aligned_cols=254 Identities=16% Similarity=0.154 Sum_probs=124.4
Q ss_pred hhhHHhhhHhhcCCCChHHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccChhHHHHHH
Q 007918 142 RVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDSVRLLAV 221 (585)
Q Consensus 142 r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~vr~~a~ 221 (585)
+..|++.++..+.++++ .-.+.++.-..+|+|.+..||+.|.+.|..++.. +....+.+.+.++++..+ ..
T Consensus 41 k~lasq~ip~~fk~fp~-la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLnk~s----l~ 111 (460)
T KOG2213|consen 41 KRLASQFIPRFFKHFPS-LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLNKAS----LT 111 (460)
T ss_pred HHHHHHHHHHHHhhCch-hhhHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHHHHH----HH
Confidence 44566777777776654 2345566778899999999999999999999874 444555565555544210 00
Q ss_pred HHHHHHhhccCchhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCc----ccccchHHHHHHhccCChHHHHHH
Q 007918 222 EGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRMDLVPAYVRLLRDNEAEVRIA 297 (585)
Q Consensus 222 ~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~ll~d~~~~vr~~ 297 (585)
..++.+ .. .+..+|..+...+..=...++.+ .....++..+...+.|-+.+--..
T Consensus 112 ~Lf~~~--------------------~~-~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~l 170 (460)
T KOG2213|consen 112 GLFGQI--------------------EV-GDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTL 170 (460)
T ss_pred HHHhhh--------------------hh-hhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHH
Confidence 011111 11 13334444433332211111111 112234455555555554443334
Q ss_pred HHHHHHHHHHhh---CHHHHHHhhHHHHHHh-----ccCCcHHHHHHHHHH----HHhhchhhCHHHHHHhHHHHHHHhh
Q 007918 298 AAGKVTKFCRIL---NPELAIQHILPCVKEL-----SSDSSQHVRSALASV----IMGMAPLLGKDATIEQLLPIFLSLL 365 (585)
Q Consensus 298 a~~~l~~l~~~~---~~~~~~~~i~~~l~~~-----~~d~~~~vr~~a~~~----l~~l~~~~~~~~~~~~l~~~l~~~l 365 (585)
.+..|+.+...- |.+.. ..+......+ ++-.++.+-..++.+ +.-++...+...+...+-..+...-
T Consensus 171 fm~~L~~lk~~~~k~~~a~l-qeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~ip~~ 249 (460)
T KOG2213|consen 171 FMDILASLKSLQTKAGEARL-QELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHIIPHH 249 (460)
T ss_pred HHHHHHhhhcccCCCCHHHH-HHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhhcccc
Confidence 444444443221 22222 2222222221 222333333334444 3444444444444443333222222
Q ss_pred cCC-ChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcC------CChHHHHHHHHHhHHHHHhhC
Q 007918 366 KDE-FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED------RHWRVRLAIIEYIPLLASQLG 427 (585)
Q Consensus 366 ~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~------~~~~~r~~~~~~l~~l~~~~~ 427 (585)
-|. ..+.+...+.+|++++.....+.. ...+|.+.+++.. ..+.....-++++..+..++|
T Consensus 250 fdkl~e~rkL~lLK~lAEMss~ttaq~a-~q~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h~Lg 317 (460)
T KOG2213|consen 250 FDKLTEERKLDLLKALAEMSSYTTAQAA-RQMLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALHHLG 317 (460)
T ss_pred cccchHHHHHHHHHHHHHhCccchHHHH-HHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHh
Confidence 222 245667788889988877654443 4567777665532 233444445555555544444
No 178
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=96.45 E-value=0.64 Score=41.75 Aligned_cols=192 Identities=15% Similarity=0.189 Sum_probs=109.9
Q ss_pred hcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccCh--hHHHHHHHHHHHHhhccCchhhhhhhHHHHHH--
Q 007918 171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDD--SVRLLAVEGCAALGKLLEPQDCVAHILPVIVN-- 246 (585)
Q Consensus 171 l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~--~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~-- 246 (585)
+.+..++++.....++|..++..-. ...+.+...+..+.+.+ ..+..+...+..+...-+.- .+.+.+.+..
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~--f~~L~~~L~~~~ 84 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH--FPFLQPLLLLLI 84 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH--HHHHHHHHHHHH
Confidence 5555666666666666666665431 33444555555555442 23334444444444322211 1222222222
Q ss_pred -------hccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhc-cCChHHHHHHHHHHHHHHHHhhCHHHHHHhh
Q 007918 247 -------FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQHI 318 (585)
Q Consensus 247 -------~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i 318 (585)
.-.+..|+...+.+.++..++...+. ...++++.+...+ ++.++.++..+++++..+++.--.+. ...
T Consensus 85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~--~s~ 160 (234)
T PF12530_consen 85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDF--YSA 160 (234)
T ss_pred hhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccH--HHH
Confidence 12345678888888889999988766 3457888888989 78888899999999999985321111 222
Q ss_pred HHHHHH-hccCCcHHHHHHHHHHHHhhchhhC----HHHHHHhHHHHHHHhhcCCCh
Q 007918 319 LPCVKE-LSSDSSQHVRSALASVIMGMAPLLG----KDATIEQLLPIFLSLLKDEFP 370 (585)
Q Consensus 319 ~~~l~~-~~~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~~ 370 (585)
+..+.. +-.+..+.+-...++.+.-+....- .+.+...++..+.++....+.
T Consensus 161 w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 161 WKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred HHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 333332 3345567676666666655433221 233456677777777776653
No 179
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.36 E-value=0.07 Score=39.34 Aligned_cols=82 Identities=18% Similarity=0.110 Sum_probs=59.6
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHHhhC-hhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHH
Q 007918 399 AIVELAEDRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 477 (585)
Q Consensus 399 ~l~~~~~~~~~~~r~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~ 477 (585)
.....+.|+...+|..++..+..+.+.-. .....+.++.++...+.|++.-|-.+|++.+..++...+. .++|.
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-----~vl~~ 81 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-----EVLPI 81 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-----HHHHH
Confidence 34455677778888888888888877655 3334566788888888999999999999998888876543 36676
Q ss_pred HHhhhcCc
Q 007918 478 VLEMINNP 485 (585)
Q Consensus 478 l~~~l~~~ 485 (585)
+.+.+.+.
T Consensus 82 L~~~y~~~ 89 (92)
T PF10363_consen 82 LLDEYADP 89 (92)
T ss_pred HHHHHhCc
Confidence 66665554
No 180
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.24 E-value=1.7 Score=44.69 Aligned_cols=308 Identities=14% Similarity=0.117 Sum_probs=172.7
Q ss_pred CchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC---hhHHHHHHHHHHHHhhccCchhhhhhhHHHHHHhccCC
Q 007918 175 DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD---DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK 251 (585)
Q Consensus 175 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d---~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~ 251 (585)
.-.+-|+.|+.+|..++.....+-...-+.|++..+-.| ++.-..+++++..+...-..+ ...|+
T Consensus 35 TL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~------------~v~dd 102 (970)
T KOG0946|consen 35 TLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP------------EVMDD 102 (970)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch------------hhccc
Confidence 346679999999999998775554555566677766666 445566666666554432100 11112
Q ss_pred ChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHH-----HHHhhHHHHHHhc
Q 007918 252 SWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL-----AIQHILPCVKELS 326 (585)
Q Consensus 252 ~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~-----~~~~i~~~l~~~~ 326 (585)
+...-....+. ++.+-+ .++.+..++..++..|-.||..+++.+..+....|.+. ..+.-+..+..++
T Consensus 103 s~qsdd~g~~i----ae~fik---~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 103 STQSDDLGLWI----AEQFIK---NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred chhhhHHHHHH----HHHHHc---CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 21222222221 222111 34577788888888889999999999999988877662 1234455667788
Q ss_pred cCCcHHHHHHHHHHHHhhchhhCH---HHHHHhHHHHHHHhhcCC----ChHHHHHHHHHhHHhhhhhc-hhH-Hh-hhH
Q 007918 327 SDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDE----FPDVRLNIISKLDQVNQVIG-IDL-LS-QSL 396 (585)
Q Consensus 327 ~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~----~~~vr~~a~~~l~~l~~~~~-~~~-~~-~~l 396 (585)
.|..+-+|..++..+..+.+..+. -...+.++..+...+..+ ..-|-.-++..+..+.+.-. .+. +. ...
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 888889999999888888765442 122444555555555432 12455556666666554322 111 11 245
Q ss_pred HHHHHHHh-----cCC---ChH-HHHHHHH-HhHHHHHhhCh------------hhHHHHHHHHHHHHccC--CchHHHH
Q 007918 397 LPAIVELA-----EDR---HWR-VRLAIIE-YIPLLASQLGV------------GFFDDKLGALCMQWLQD--KVYSIRD 452 (585)
Q Consensus 397 l~~l~~~~-----~~~---~~~-~r~~~~~-~l~~l~~~~~~------------~~~~~~l~~~l~~~l~d--~~~~vr~ 452 (585)
+|.+..++ .|. .|. -|..-+. ++..+...+.+ ......++..+...+.. -...|+.
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 66666443 332 464 2332222 22222222211 12233455555555443 4568899
Q ss_pred HHHHHHHHHHHHhCH--HHHH-----------hhhHHHHHhhhcCc-chHHHHHHHHHHHHhh
Q 007918 453 AAANNLKRLAEEFGP--EWAM-----------QHITPQVLEMINNP-HYLYRMTILRAISLLA 501 (585)
Q Consensus 453 ~a~~~l~~l~~~~~~--~~~~-----------~~ll~~l~~~l~~~-~~~~R~~a~~~l~~l~ 501 (585)
.++.+++.++..... +.|. ..++=.+..+.+.. .+..|.++..++..+.
T Consensus 336 esiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l 398 (970)
T KOG0946|consen 336 ESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYL 398 (970)
T ss_pred HHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 999999888763221 1121 11222233344444 5789999999887764
No 181
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.24 E-value=1.3 Score=43.25 Aligned_cols=150 Identities=11% Similarity=0.076 Sum_probs=77.2
Q ss_pred HHHHhHHHHHhhhcccchHHHHHHHHHHhccChhHHHHHHHHHHHHhhccCchhhhhhhHHHHHHhccCCChHHHHHHHH
Q 007918 182 SAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVAN 261 (585)
Q Consensus 182 ~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~~~~ 261 (585)
..+..+..+......++..++++.++..++.++.-|.... ...+. ..+ ....|++. +++.+++-+...++.
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f---~~~~~-~~~----~~~~~fl~-lL~~~d~~i~~~a~~ 123 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLF---HDDAL-LKK----KTWEPFFN-LLNRQDQFIVHMSFS 123 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHH---HHHhh-ccc----cchHHHHH-HHcCCchhHHHHHHH
Confidence 4455555566666677778888888888877732222111 11110 011 12233333 556678888999999
Q ss_pred HHHHHHHHhCCccccc----chHHHHHHhccCC-hHHHHHHHHHHHHHHHHhhCHH--HHHHhhHHHHHHhccCC--cHH
Q 007918 262 QLYELCEAVGPEPTRM----DLVPAYVRLLRDN-EAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDS--SQH 332 (585)
Q Consensus 262 ~l~~l~~~~~~~~~~~----~l~~~l~~ll~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~--~~~ 332 (585)
.+..+...-... ... .+.+.+...+... +......++.++..+.+.-... .+....++.+..+++.. +..
T Consensus 124 iLt~l~~~~~~~-~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Q 202 (429)
T cd00256 124 ILAKLACFGLAK-MEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQ 202 (429)
T ss_pred HHHHHHhcCccc-cchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHH
Confidence 988886532221 111 2334444445432 3556666777887776532211 22233455555554422 234
Q ss_pred HHHHHHHHH
Q 007918 333 VRSALASVI 341 (585)
Q Consensus 333 vr~~a~~~l 341 (585)
....++-++
T Consensus 203 l~Y~~ll~l 211 (429)
T cd00256 203 LQYQSIFCI 211 (429)
T ss_pred HHHHHHHHH
Confidence 444444333
No 182
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=96.16 E-value=0.072 Score=39.27 Aligned_cols=70 Identities=20% Similarity=0.180 Sum_probs=51.9
Q ss_pred HHHHHhhhcCcchHHHHHHHHHHHHhhhhcC-hHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc
Q 007918 475 TPQVLEMINNPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 544 (585)
Q Consensus 475 l~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~-~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~ 544 (585)
+...+..++|+...+|..++..+..++..-. .....+.++..++..++|+++-|=.++++++..++...+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 4445566777777788888888888877655 333467778888888888888888888888888877654
No 183
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.12 E-value=1.8 Score=43.63 Aligned_cols=278 Identities=10% Similarity=0.024 Sum_probs=144.7
Q ss_pred hHHHHHHHhhhHHHHHHhhChhhhhhhccccccccc--CCchHHHHHHHHHHhccccccCC--cchHHhchHHHhhhhhc
Q 007918 22 DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN--DDDDEVLLAMAEELGVFIPYVGG--VEHAHVLLPPLETLCTV 97 (585)
Q Consensus 22 ~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~--d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~~ 97 (585)
.-..|..|++.+.........+... ++-..-.++. +...++|+++.+.|..++..-.. ......++..+..--.+
T Consensus 3 ~l~~R~~a~~~l~~~i~~~~~~~i~-~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~ 81 (464)
T PF11864_consen 3 PLSERIKAAEELCESIQKYPLSSIE-EIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSND 81 (464)
T ss_pred CHHHHHHHHHHHHHHHHhCCchHHH-HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCc
Confidence 3567888888888776655432211 1111112222 23558999999998887663221 11122233444333345
Q ss_pred hhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcC---------------c----------cch--hhHHhhhH
Q 007918 98 EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEW---------------F----------TAR--VSACGLFH 150 (585)
Q Consensus 98 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~---------------~----------~~r--~~a~~~l~ 150 (585)
++-.-|-.|..+|..=++.+.. +...+.|++......-. . ..+ ......+.
T Consensus 82 ~d~~~~l~aL~~LT~~Grdi~~--~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~ 159 (464)
T PF11864_consen 82 DDFDLRLEALIALTDNGRDIDF--FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLV 159 (464)
T ss_pred hhHHHHHHHHHHHHcCCcCchh--cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHH
Confidence 5556777777777765555532 33333343333221100 0 000 11122222
Q ss_pred hhcC----CCChHHHHHHHHHHHhhcCCC-chHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHhccChhHHHHHHHHH
Q 007918 151 IAYP----SAPDILKTELRSIYTQLCQDD-MPMVRRSAASNLGKFAATVE-PAHLKTDIMSIFEDLTQDDSVRLLAVEGC 224 (585)
Q Consensus 151 ~~~~----~~~~~~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~l~~d~~vr~~a~~~l 224 (585)
.++. .+++.....++..+..+|... ++..=+.+...+..+...-. |......++..+.......+....+-.++
T Consensus 160 nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m 239 (464)
T PF11864_consen 160 NVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTM 239 (464)
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHH
Confidence 3322 345567777777777776543 33333667777777765311 22222333333333322244555566666
Q ss_pred HHHhhccCchhhhhhhHHHHHHhc------cCCChHHHHHHHHHHHHHHHHhCCcccc----c--chHHHHHHhccCChH
Q 007918 225 AALGKLLEPQDCVAHILPVIVNFS------QDKSWRVRYMVANQLYELCEAVGPEPTR----M--DLVPAYVRLLRDNEA 292 (585)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~~l~~~~------~d~~~~vR~~~~~~l~~l~~~~~~~~~~----~--~l~~~l~~ll~d~~~ 292 (585)
.+++..-.. ...+..+..++ ...+..+-+.|+..++.+.-..+.+..+ . -++|.+...++-++.
T Consensus 240 ~nL~~S~~g----~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~ 315 (464)
T PF11864_consen 240 RNLLKSHLG----HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSP 315 (464)
T ss_pred HHHHcCccH----HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCC
Confidence 666643222 22333444444 2345667778899998887666443322 2 388888888887776
Q ss_pred HHHHHHHHHHHHHH
Q 007918 293 EVRIAAAGKVTKFC 306 (585)
Q Consensus 293 ~vr~~a~~~l~~l~ 306 (585)
.|-...+..+..+.
T Consensus 316 ~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 316 RVDYEILLLINRLL 329 (464)
T ss_pred eehHHHHHHHHHHH
Confidence 67666666666665
No 184
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=96.04 E-value=2.1 Score=43.83 Aligned_cols=307 Identities=15% Similarity=0.195 Sum_probs=162.2
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhCCccc-ccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHH---
Q 007918 248 SQDKSWRVRYMVANQLYELCEAVGPEPT-RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVK--- 323 (585)
Q Consensus 248 ~~d~~~~vR~~~~~~l~~l~~~~~~~~~-~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~--- 323 (585)
-+..++.+-..++.+++....-+.-... .+..++.+...+. -.++|.+|+.++-++...-....-+-.++..+.
T Consensus 202 ~n~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l 279 (980)
T KOG2021|consen 202 ENIVNPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTL 279 (980)
T ss_pred hccCCchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence 3344788888888888887766544332 2356777777776 468999999999888765433211111222221
Q ss_pred Hh----ccC--CcHHHHHHHHHHHHhhchhh-----------CH---H---HHHHhHHHHHHHhhcCCChHHHHHHHHHh
Q 007918 324 EL----SSD--SSQHVRSALASVIMGMAPLL-----------GK---D---ATIEQLLPIFLSLLKDEFPDVRLNIISKL 380 (585)
Q Consensus 324 ~~----~~d--~~~~vr~~a~~~l~~l~~~~-----------~~---~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 380 (585)
++ ..| .+.++-+...+.+..++-.+ .. + .....++|++.+.+.++..+.-.+...-+
T Consensus 280 ~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFl 359 (980)
T KOG2021|consen 280 ELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFL 359 (980)
T ss_pred HHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHH
Confidence 11 112 44555555555555543221 00 0 11234788889999888777766655554
Q ss_pred HHhhhhhch------h---HHhhhHHHHHHHHhcC------CC----------hHHHHHHHHHhHHHHHhhChhhHHHHH
Q 007918 381 DQVNQVIGI------D---LLSQSLLPAIVELAED------RH----------WRVRLAIIEYIPLLASQLGVGFFDDKL 435 (585)
Q Consensus 381 ~~l~~~~~~------~---~~~~~ll~~l~~~~~~------~~----------~~~r~~~~~~l~~l~~~~~~~~~~~~l 435 (585)
......+.. . .+...++-.+.++.-| .+ ..+|...--....+ ..+.++.+...+
T Consensus 360 sdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti-~~idpsl~l~~I 438 (980)
T KOG2021|consen 360 SDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTI-VVIDPSLFLNNI 438 (980)
T ss_pred HHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHH
Confidence 444332211 1 1111222233333322 11 12444332222222 233455554444
Q ss_pred HHHHHHH---ccCCchHHHHHHHHHHHHHHHHhCHHHH--------HhhhHHHHHhh------hcCcchHHHHHHHHHHH
Q 007918 436 GALCMQW---LQDKVYSIRDAAANNLKRLAEEFGPEWA--------MQHITPQVLEM------INNPHYLYRMTILRAIS 498 (585)
Q Consensus 436 ~~~l~~~---l~d~~~~vr~~a~~~l~~l~~~~~~~~~--------~~~ll~~l~~~------l~~~~~~~R~~a~~~l~ 498 (585)
-..+-.. ....+|..-+.|+..+=.+.+.+..+.+ ...++..+..+ ..+++..+..-..+.+.
T Consensus 439 r~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~iv 518 (980)
T KOG2021|consen 439 RQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIV 518 (980)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHH
Confidence 4443333 3567788888999888888776654321 11222222222 33445555555555554
Q ss_pred HhhhhcChHHHHhcHHHHHHhh------cCCCCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhc
Q 007918 499 LLAPVMGSEITCSRLLPVVINA------SKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELT 560 (585)
Q Consensus 499 ~l~~~~~~~~~~~~i~~~l~~~------l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~l~ 560 (585)
.....+..+ ..-+|.++.. +.+.+..||..+...+.+.+..+... .+.+.++..+..++
T Consensus 519 RY~kff~~e---sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL 585 (980)
T KOG2021|consen 519 RYNKFFSTE---SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLL 585 (980)
T ss_pred HHHHHHhcc---hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433332 3344555544 34558999999999999988776554 34444555544444
No 185
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=96.03 E-value=1.6 Score=42.20 Aligned_cols=216 Identities=17% Similarity=0.166 Sum_probs=122.6
Q ss_pred HHHHHH-hhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHH------HHHHhccC---hhHHHHHHHHHHHHhhccC-
Q 007918 164 LRSIYT-QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMS------IFEDLTQD---DSVRLLAVEGCAALGKLLE- 232 (585)
Q Consensus 164 l~~~l~-~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~------~l~~l~~d---~~vr~~a~~~l~~l~~~~~- 232 (585)
..+-+. .++++. .+||.++...+..+..... ....+.. +...+..+ +.-|..|+..+..+.+.-.
T Consensus 26 ~~~~i~~~lL~~~-~~vraa~yRilRy~i~d~~---~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~ 101 (371)
T PF14664_consen 26 FGERIQCMLLSDS-KEVRAAGYRILRYLISDEE---SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG 101 (371)
T ss_pred HHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCHH---HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC
Confidence 333444 345555 9999999999988776431 1222211 23334444 5589999999999988632
Q ss_pred chhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHH
Q 007918 233 PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE 312 (585)
Q Consensus 233 ~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~ 312 (585)
.+.....+...+..+.++.+.+.|..+++.+.+++-.-+.-.....-+..+.+.+.|...++....+..+-.+...-...
T Consensus 102 ~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR 181 (371)
T PF14664_consen 102 PKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTR 181 (371)
T ss_pred cccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchh
Confidence 34556667888888889999999999999999998764443333344566666666655555555555555554432111
Q ss_pred H------HHHhhHHHHHHh----ccCCcH-HHHHHHHHHHHhh----chhh--CHHHHHHhHHHHHHHhhcCCChHHHHH
Q 007918 313 L------AIQHILPCVKEL----SSDSSQ-HVRSALASVIMGM----APLL--GKDATIEQLLPIFLSLLKDEFPDVRLN 375 (585)
Q Consensus 313 ~------~~~~i~~~l~~~----~~d~~~-~vr~~a~~~l~~l----~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~ 375 (585)
. -.+.++..+.+. .++... ..-..+..++..+ ...+ ....+ .-+..+...+.-+++.+|..
T Consensus 182 ~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~--~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 182 KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF--RGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc--hHHHHHHHHHcCCCHHHHHH
Confidence 1 123344444433 122221 1222222333332 2211 11111 22344556667777788888
Q ss_pred HHHHhHHhhh
Q 007918 376 IISKLDQVNQ 385 (585)
Q Consensus 376 a~~~l~~l~~ 385 (585)
.+..+-.+..
T Consensus 260 Ildll~dllr 269 (371)
T PF14664_consen 260 ILDLLFDLLR 269 (371)
T ss_pred HHHHHHHHHC
Confidence 7777766654
No 186
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=95.97 E-value=1.8 Score=42.34 Aligned_cols=330 Identities=13% Similarity=0.093 Sum_probs=154.2
Q ss_pred HhhccCchhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHH
Q 007918 227 LGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFC 306 (585)
Q Consensus 227 l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~ 306 (585)
+....+++...++++..+-+++.+....++ .|...+.. .......|+.++..+|+-+...++..+..+.
T Consensus 61 ll~~~~~~d~vqyvL~Li~dll~~~~~~~~-----~f~~~~~~------~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~ 129 (429)
T cd00256 61 LLSQIDKDDTVRYVLTLIDDMLQEDDTRVK-----LFHDDALL------KKKTWEPFFNLLNRQDQFIVHMSFSILAKLA 129 (429)
T ss_pred HHhccCcHHHHHHHHHHHHHHHHhchHHHH-----HHHHHhhc------cccchHHHHHHHcCCchhHHHHHHHHHHHHH
Confidence 334444455566666666666666433322 22222110 1223444555777778889999999998887
Q ss_pred HhhCH---HHHHHhhHHHHHHhccCC-cHHHHHHHHHHHHhhchhhCHH--HHHHhHHHHHHHhhcCC--ChHHHHHHHH
Q 007918 307 RILNP---ELAIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDE--FPDVRLNIIS 378 (585)
Q Consensus 307 ~~~~~---~~~~~~i~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~--~~~vr~~a~~ 378 (585)
..-.. ....+.+.+.+...+..+ +...+..++.++..+...-... .+....++.+...++.. ..+....++-
T Consensus 130 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll 209 (429)
T cd00256 130 CFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF 209 (429)
T ss_pred hcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence 53111 112233455555555543 3556666777777765433221 11223445555555432 2344444433
Q ss_pred HhHHhh--hhhchhHHhhhHHHHHHHHhcCCC-hHHHHHHHHHhHHHHHhhC---------hhhHHHHHHHHHHHHccC-
Q 007918 379 KLDQVN--QVIGIDLLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLG---------VGFFDDKLGALCMQWLQD- 445 (585)
Q Consensus 379 ~l~~l~--~~~~~~~~~~~ll~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~---------~~~~~~~l~~~l~~~l~d- 445 (585)
++-.+. ...-.......++|.+.+++++.. ..+-..++.++..+...-. ...+...+.+.+..+...
T Consensus 210 ~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk 289 (429)
T cd00256 210 CIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRK 289 (429)
T ss_pred HHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCC
Confidence 322221 111011111357777777766532 2333333444444444211 111111233333222211
Q ss_pred -CchHHHHHHHHHHHHHH----HHhC-HHHHHhhhHHHHHhhh-cCc-chHHHHHHHHHHHHhhhhcChHHHHhcHHHHH
Q 007918 446 -KVYSIRDAAANNLKRLA----EEFG-PEWAMQHITPQVLEMI-NNP-HYLYRMTILRAISLLAPVMGSEITCSRLLPVV 517 (585)
Q Consensus 446 -~~~~vr~~a~~~l~~l~----~~~~-~~~~~~~ll~~l~~~l-~~~-~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l 517 (585)
.+.++.. .+..+.... +.+. -+.+..++...-+.+- -+. ..-=|+++-.+- ..+ -.++..|
T Consensus 290 ~~DedL~e-dl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~-------~~~---~~llk~L 358 (429)
T cd00256 290 YDDEDLTD-DLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLN-------EKN---YELLKIL 358 (429)
T ss_pred CCcHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHH-------hcc---hHHHHHH
Confidence 1122222 112222111 1111 1112222222222210 011 111133333221 111 2344555
Q ss_pred HhhcC-CCCchHHHHHHHHHHHHHhhhchH-HHHhh--HHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007918 518 INASK-DRVPNIKFNVAKVLQSLIPIVDQS-MVEKT--IRPCLVELTEDPDVDVRFFATQAIQSI 578 (585)
Q Consensus 518 ~~~l~-d~~~~vR~~~~~~l~~l~~~~~~~-~~~~~--~~~~l~~l~~D~~~~Vr~~a~~al~~l 578 (585)
..+++ +.++.+-..||.=+|.++..++.. .+.+. ....+.++++++|++||..|..|+..+
T Consensus 359 ~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 359 IHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred HHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 55553 446777778888899998887532 22222 567777889999999999999998865
No 187
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.89 E-value=0.06 Score=44.79 Aligned_cols=138 Identities=11% Similarity=0.169 Sum_probs=82.6
Q ss_pred hhHHHHHHHHhc-CCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHcc-----CCchHHHHHHHHHHHHHHHH---
Q 007918 394 QSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-----DKVYSIRDAAANNLKRLAEE--- 464 (585)
Q Consensus 394 ~~ll~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~--- 464 (585)
+.+++.+.++++ +.+|.+|..++..+|.+... .+-.++ ....... +.+........ +...
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL-DP~~~k-----~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~ 77 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGAL-DPYKHK-----SIQKSLDSKSSENSNDESTDISL-----PMMGISP 77 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc-CcHHHh-----cccccCCccccccccccchhhHH-----hhccCCC
Confidence 567777777665 34688999998888876421 111111 0000011 11111111111 1111
Q ss_pred hCHHHHHhhhHHHHHhhhcCcc-hHHHHHHHHHHHHhhhhcC--hHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 007918 465 FGPEWAMQHITPQVLEMINNPH-YLYRMTILRAISLLAPVMG--SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 541 (585)
Q Consensus 465 ~~~~~~~~~ll~~l~~~l~~~~-~~~R~~a~~~l~~l~~~~~--~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~ 541 (585)
..++++....+..+...++|+. ..-+.++++++..+.+..| .-.+.+.++|.++..+....+..|.....-|+.++.
T Consensus 78 ~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 78 SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 2335566677788888888886 3455577778777775444 334789999999999987777888888877777754
Q ss_pred h
Q 007918 542 I 542 (585)
Q Consensus 542 ~ 542 (585)
.
T Consensus 158 i 158 (160)
T PF11865_consen 158 I 158 (160)
T ss_pred H
Confidence 3
No 188
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=95.89 E-value=1.2 Score=39.89 Aligned_cols=194 Identities=16% Similarity=0.157 Sum_probs=114.5
Q ss_pred hhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHH--
Q 007918 364 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ-- 441 (585)
Q Consensus 364 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~-- 441 (585)
.-+..++.+....+.+|..++..-. ...+.++..+..+.+.+....+..+...+..+.+.-. ..| +.+.+.+..
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f-~~L~~~L~~~~ 84 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF-PFLQPLLLLLI 84 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH-HHHHHHHHHHH
Confidence 4556667777777777777765431 2224455666666666665555555555555554322 111 333333333
Q ss_pred -------HccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhh-cCcchHHHHHHHHHHHHhhhh--cChHHHHh
Q 007918 442 -------WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI-NNPHYLYRMTILRAISLLAPV--MGSEITCS 511 (585)
Q Consensus 442 -------~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l-~~~~~~~R~~a~~~l~~l~~~--~~~~~~~~ 511 (585)
.-.+..++...+...++..++...+. ....+++.+...+ .+.+...+..+++++..+.+. .+......
T Consensus 85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~ 162 (234)
T PF12530_consen 85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWK 162 (234)
T ss_pred hhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 12356677777777788888876554 4556888888888 677888999999999998853 22211222
Q ss_pred cHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh----chHHHHhhHHHHHHHhcCCCCcc
Q 007918 512 RLLPVVINASKDRVPNIKFNVAKVLQSLIPIV----DQSMVEKTIRPCLVELTEDPDVD 566 (585)
Q Consensus 512 ~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~----~~~~~~~~~~~~l~~l~~D~~~~ 566 (585)
.+.+.+ -.+..|.|-...+..+..+-... ..+.+...++..++++....+.+
T Consensus 163 vl~~~l---~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~ 218 (234)
T PF12530_consen 163 VLQKKL---SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVN 218 (234)
T ss_pred HHHHhc---CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccc
Confidence 333322 34445655555555554432111 12356678889999987777754
No 189
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=95.87 E-value=5.8 Score=47.49 Aligned_cols=507 Identities=15% Similarity=0.140 Sum_probs=246.1
Q ss_pred HHHHHhccccccCCcchHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcCh------h--hHHhhHHHHHHHhh-cCc
Q 007918 67 MAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE------S--DLVDWYIPLVKRLA-AGE 137 (585)
Q Consensus 67 ~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~------~--~~~~~l~~~l~~l~-~~~ 137 (585)
+-+.++.+.. .+......+-..+...+...++++|..+...+..+...... - +....++..+..+. .+.
T Consensus 464 a~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~ 541 (2341)
T KOG0891|consen 464 AFKTLGGFKF--SGYSLTLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADT 541 (2341)
T ss_pred HHHHHhhhhh--hhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCC
Confidence 4445555532 11122333444466788899999999998888887665433 1 12344444444333 455
Q ss_pred CccchhhHHhhhHhhcCCCCh-HHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC---
Q 007918 138 WFTARVSACGLFHIAYPSAPD-ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD--- 213 (585)
Q Consensus 138 ~~~~r~~a~~~l~~~~~~~~~-~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d--- 213 (585)
++.+|......+. ..... -.+...+..+...++|..-.++..+...++.++...+ ..+.+.+......+.++
T Consensus 542 ~~~i~~~v~~~l~---~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~-a~vl~~lr~~~l~~~s~l~~ 617 (2341)
T KOG0891|consen 542 DPDIRIRVLSSLN---ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNP-AYVLPSLRKTLLELLTELEF 617 (2341)
T ss_pred CcchhhhHHhhhc---cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccH-HHHhHHHHHHHHHHhchhhh
Confidence 6777765444333 22222 2456667777788888888899999888887766432 11222222222222222
Q ss_pred hh---HHHHHHHHHHHHhhccC--chhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHHh
Q 007918 214 DS---VRLLAVEGCAALGKLLE--PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRL 286 (585)
Q Consensus 214 ~~---vr~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~l 286 (585)
+. +...+..-+..+....+ -..+...++..+...+.+.+..+-..+..+++.++...|.+. ....+++.+.+.
T Consensus 618 sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~ 697 (2341)
T KOG0891|consen 618 SGMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKM 697 (2341)
T ss_pred cchHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHH
Confidence 11 11122222221111111 122344455555666778888999999999999999888432 223677777777
Q ss_pred ccCCh-HHHHHHHHHHHHHHHHhhCH----HHHHHhhHHHHHHhcc-CCcHHHHHHHHHHHHhhchhhCHHHHH---H--
Q 007918 287 LRDNE-AEVRIAAAGKVTKFCRILNP----ELAIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATI---E-- 355 (585)
Q Consensus 287 l~d~~-~~vr~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~---~-- 355 (585)
+.|.. ..-|.++.+.++.+...-+- ....+.++..+...++ .....+|..++..++..+..-+..... .
T Consensus 698 l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~~~~~~~~~~~~ 777 (2341)
T KOG0891|consen 698 LQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDPYKHKVTEGTSA 777 (2341)
T ss_pred HHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccchhHHHHHhhhhh
Confidence 77655 55677888899888765431 1111333444433333 223456666666666443222110000 0
Q ss_pred -----------hHHHHHHHhhcCC-ChHHHHHHHHHhHHhh--------------------hhhch--hHHhhhHHHHHH
Q 007918 356 -----------QLLPIFLSLLKDE-FPDVRLNIISKLDQVN--------------------QVIGI--DLLSQSLLPAIV 401 (585)
Q Consensus 356 -----------~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~--------------------~~~~~--~~~~~~ll~~l~ 401 (585)
.....+...+..+ ....-..++..+..+. ...|. ..+.+.++|.+.
T Consensus 778 ~~~~~~~~k~~~~~~~~~~~~~~~~~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~ 857 (2341)
T KOG0891|consen 778 SKISSEQIKSDIDISLLESGVNPSNDEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLI 857 (2341)
T ss_pred HhhhhccccccchHHHHHhhhhhhhhhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHH
Confidence 0001011111111 0000001111111111 11110 111123333333
Q ss_pred HHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCC---chHHHHHHHHHHHHHHHHhCHHHH--HhhhHH
Q 007918 402 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK---VYSIRDAAANNLKRLAEEFGPEWA--MQHITP 476 (585)
Q Consensus 402 ~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~---~~~vr~~a~~~l~~l~~~~~~~~~--~~~ll~ 476 (585)
.....-.|..+......+.... ....... ..+.+.+.....+. +.++.......+..+...++.++. .+..++
T Consensus 858 ~~~r~~~~~~~~f~~~q~~~~~-~~~~~h~-~~~~~~i~~~i~~~~~~~~~l~~~~~~l~~~i~~~l~~~f~~~l~~~~~ 935 (2341)
T KOG0891|consen 858 DVMRSCPPNLREFYFQQLTSLV-AIVRQHI-RPYMESIFTLIKDFWPPDTSLQITIISLIEDIAVALGGEFKKYLPELLP 935 (2341)
T ss_pred HHHHhcCcchhHHHHHhhhhhh-hccchhH-hhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhcc
Confidence 3222222222222111111100 0000000 01222233333322 223334444555555555555532 233444
Q ss_pred HHHhhhcCcchHHHHHHHHHHHHhhh-hcChHHHHhcHHHHHHhhcCCC--CchHHHHHHHHHHHHHhhhchHHHHhhHH
Q 007918 477 QVLEMINNPHYLYRMTILRAISLLAP-VMGSEITCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQSMVEKTIR 553 (585)
Q Consensus 477 ~l~~~l~~~~~~~R~~a~~~l~~l~~-~~~~~~~~~~i~~~l~~~l~d~--~~~vR~~~~~~l~~l~~~~~~~~~~~~~~ 553 (585)
.++.-....+...|.........+.. .-+.+.+....+|.+++++.+. ...+|..+....+.+..........+.+.
T Consensus 936 ~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~hl~~~~~vkl~~~~~~~~~~~~~~l~t~~~l~~~~~~~~~~s~i~ 1015 (2341)
T KOG0891|consen 936 TMLTVLQHDKSKDRVVSRKVLQSLQKFGSNLEQYLHLLLPPIVKLFEDPTVPLSIRKSALITIGRLAQQVDLSEYASRII 1015 (2341)
T ss_pred chheeecccccchHHHHHHhhHHHHhcCccHHhhHhhhccHHHHHHhhhhhhHHHHhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 44333333333444444444433332 2222334567788899998887 67889999999999988877766666666
Q ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 007918 554 PCLVELTEDPDVDVRFFATQAIQSIDHVM 582 (585)
Q Consensus 554 ~~l~~l~~D~~~~Vr~~a~~al~~l~~~l 582 (585)
..+.+.+.-. ++.+......+..+-+-+
T Consensus 1016 ~~~~r~l~~s-~el~~~~~~~l~~l~~~~ 1043 (2341)
T KOG0891|consen 1016 HPLVRVLSSS-PELRDVIMDTLIALVKQL 1043 (2341)
T ss_pred HHHHHhhccc-hhHHHHHHHHHHHHHHhh
Confidence 5556544444 777777766666655443
No 190
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.85 E-value=2.1 Score=42.18 Aligned_cols=58 Identities=10% Similarity=0.009 Sum_probs=26.8
Q ss_pred CChHHHHHHHHHHHHHHHHhhCHHH----HHHhhHHHHHHhccCCcHHHHHHHHHHHHhhch
Q 007918 289 DNEAEVRIAAAGKVTKFCRILNPEL----AIQHILPCVKELSSDSSQHVRSALASVIMGMAP 346 (585)
Q Consensus 289 d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~ 346 (585)
|+.|.=...+-+.+..+......+. +...++..+..++.+++++-|..+...+..+..
T Consensus 101 e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~ 162 (409)
T PF01603_consen 101 EPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYG 162 (409)
T ss_dssp -TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHH
T ss_pred ccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433333 333444455555555555555555555555443
No 191
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.77 E-value=1.8 Score=40.95 Aligned_cols=173 Identities=17% Similarity=0.156 Sum_probs=95.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHH--HHHHHHHHHHcc----CCchHHHHHHHHHHHHHHHHh--CHHH
Q 007918 398 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLQ----DKVYSIRDAAANNLKRLAEEF--GPEW 469 (585)
Q Consensus 398 ~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~----d~~~~vr~~a~~~l~~l~~~~--~~~~ 469 (585)
..+..++..+++.+...++..+..+....+..... ..+++.+.+++. .++.+++..++.+++.+...- ...+
T Consensus 108 ~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f 187 (312)
T PF03224_consen 108 SPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVF 187 (312)
T ss_dssp HHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHH
Confidence 33444777778888888888888887665433222 245555555554 355667788888888886521 1122
Q ss_pred HHhhhHHHHHhhh-----cC--cchHHHHHHHHHHHHhhhh--cChHHHHhcHHHHHHhhcCCC-CchHHHHHHHHHHHH
Q 007918 470 AMQHITPQVLEMI-----NN--PHYLYRMTILRAISLLAPV--MGSEITCSRLLPVVINASKDR-VPNIKFNVAKVLQSL 539 (585)
Q Consensus 470 ~~~~ll~~l~~~l-----~~--~~~~~R~~a~~~l~~l~~~--~~~~~~~~~i~~~l~~~l~d~-~~~vR~~~~~~l~~l 539 (585)
+....++.+...+ .+ .+.++...++.++-.+.-. .-.......++|.+.+.+++. ...|-.-++.++.++
T Consensus 188 ~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl 267 (312)
T PF03224_consen 188 WKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNL 267 (312)
T ss_dssp HTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHT
T ss_pred HhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 3455666666666 22 2345555666665544311 111222345788888877653 445555677778887
Q ss_pred Hhhhch----HHHHhhHHHHHHHhcCCC--CccHHHH
Q 007918 540 IPIVDQ----SMVEKTIRPCLVELTEDP--DVDVRFF 570 (585)
Q Consensus 540 ~~~~~~----~~~~~~~~~~l~~l~~D~--~~~Vr~~ 570 (585)
+..... ..+...+++.+..+.... |+++..-
T Consensus 268 ~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 268 LSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp TSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred HhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence 765442 345566778887775432 5555443
No 192
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=95.76 E-value=0.25 Score=47.14 Aligned_cols=130 Identities=20% Similarity=0.321 Sum_probs=76.6
Q ss_pred hcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCC-------ChHHHHHHHHHhHHHHHh--hChhhHHHHH
Q 007918 365 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-------HWRVRLAIIEYIPLLASQ--LGVGFFDDKL 435 (585)
Q Consensus 365 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~-------~~~~r~~~~~~l~~l~~~--~~~~~~~~~l 435 (585)
+.+.+...|..|+..|..=. |. +.++|.+..++.+. +...-...+..+..+..+ +..+.+...+
T Consensus 187 ~~~~~~~~r~~aL~sL~tD~---gl----~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~L 259 (343)
T cd08050 187 LVGSNEEKRREALQSLRTDP---GL----QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQL 259 (343)
T ss_pred HhCCCHHHHHHHHHHhccCC---Cc----hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHH
Confidence 33445666666666654422 22 34556655544321 333333333444444322 2234455567
Q ss_pred HHHHHHHc----------cCCchHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhcCcc--hHHHHHHHHHHHHhh
Q 007918 436 GALCMQWL----------QDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPH--YLYRMTILRAISLLA 501 (585)
Q Consensus 436 ~~~l~~~l----------~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~~~~--~~~R~~a~~~l~~l~ 501 (585)
+|.++.++ .+..|.+|..|+..++.++..++... ....+...+.+.+.|+. ....-+|+..+..++
T Consensus 260 ip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 260 IPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred HHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 88877765 35779999999999999999887652 44566666666676664 344667777776654
No 193
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.74 E-value=3.8 Score=44.37 Aligned_cols=129 Identities=14% Similarity=0.083 Sum_probs=94.7
Q ss_pred ccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhh---cC-hHHHHhcHHHHHH
Q 007918 443 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV---MG-SEITCSRLLPVVI 518 (585)
Q Consensus 443 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~---~~-~~~~~~~i~~~l~ 518 (585)
..|-.+.+|.--+..||..+..++..++....+.++=-.++|.+..||..++.++..+... .+ -..|.+++-..++
T Consensus 296 YRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIV 375 (1048)
T KOG2011|consen 296 YRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIV 375 (1048)
T ss_pred cccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 4688999999999999999999998888888999998899999999999999999999875 22 2346777777777
Q ss_pred hhc-CCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHH
Q 007918 519 NAS-KDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQA 574 (585)
Q Consensus 519 ~~l-~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~D~~~~Vr~~a~~a 574 (585)
.+. .|-+..||...+..+...... ......=...+..+.-|.++.++..|..-
T Consensus 376 eMadrd~~~~Vrav~L~~~~~~~~~---g~L~d~di~~Vy~Li~d~~r~~~~aa~~f 429 (1048)
T KOG2011|consen 376 EMADRDRNVSVRAVGLVLCLLLSSS---GLLSDKDILIVYSLIYDSNRRVAVAAGEF 429 (1048)
T ss_pred HHHhhhcchhHHHHHHHHHHHHhcc---cccChhHHHHHHHHHhccCcchHHHHHHH
Confidence 777 566788887766666555322 11111222333445567788877666543
No 194
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=95.64 E-value=0.67 Score=45.94 Aligned_cols=96 Identities=18% Similarity=0.117 Sum_probs=66.3
Q ss_pred chhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChH--H--HHHHHHHHHhhc
Q 007918 97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI--L--KTELRSIYTQLC 172 (585)
Q Consensus 97 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~--~--~~~l~~~l~~l~ 172 (585)
|.--..|-.+.++|+.++..++.+.....+-+.+...+++.+...|..++.++..-+...... . ...+.+.+...+
T Consensus 98 d~v~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 98 DVVIRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 444667889999999999999877766666677778888888888999998888776655431 1 246666666666
Q ss_pred CCCch-----------HHHHHHHHhHHHHHh
Q 007918 173 QDDMP-----------MVRRSAASNLGKFAA 192 (585)
Q Consensus 173 ~d~~~-----------~vr~~a~~~l~~l~~ 192 (585)
+++.+ .+|..+...+..+..
T Consensus 178 ~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~ 208 (441)
T PF12054_consen 178 ENPEPPYYDELVPSLKRLRTECQQLLATFRD 208 (441)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64332 345555555555443
No 195
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=95.64 E-value=1.5 Score=42.22 Aligned_cols=70 Identities=13% Similarity=0.072 Sum_probs=51.9
Q ss_pred hhhhHHHHHHhc-cCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHH
Q 007918 237 VAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR 307 (585)
Q Consensus 237 ~~~~~~~l~~~~-~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~ 307 (585)
...+...+..+. ++.++......+.+|+.-...+ ....+..++..+.+.++|..+.+|+..+..++....
T Consensus 20 s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 20 SSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 344444444443 4567777888888888777776 333466789999999999998899999999988775
No 196
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.57 E-value=2.2 Score=40.43 Aligned_cols=207 Identities=13% Similarity=0.130 Sum_probs=123.0
Q ss_pred HHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhh-chhH-----Hh----hhHHHHHHHHhcCCChHHHHHHHHHhHH
Q 007918 352 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GIDL-----LS----QSLLPAIVELAEDRHWRVRLAIIEYIPL 421 (585)
Q Consensus 352 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~-----~~----~~ll~~l~~~~~~~~~~~r~~~~~~l~~ 421 (585)
.+...+++.+...+..-+-+.|+.+....+.+...- +... +. +.++..+....++++-. ..+-..+..
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dia--l~~g~mlRe 149 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIA--LNCGDMLRE 149 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTH--HHHHHHHHH
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCcccc--chHHHHHHH
Confidence 345567777777777777888888887777766432 1110 10 33444455444544422 111112222
Q ss_pred HHHhhChhhHHHH-----HHHHHHHHccCCchHHHHHHHHHHHHHHHH---hCHHHH---HhhhHHHHHhhhcCcchHHH
Q 007918 422 LASQLGVGFFDDK-----LGALCMQWLQDKVYSIRDAAANNLKRLAEE---FGPEWA---MQHITPQVLEMINNPHYLYR 490 (585)
Q Consensus 422 l~~~~~~~~~~~~-----l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~---~~~~~~---~~~ll~~l~~~l~~~~~~~R 490 (585)
..+ -+.+... ....+.+..+.++.+|-..|..++..+... +..+++ .+.+......++.++|+.+|
T Consensus 150 c~k---~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 150 CIK---HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HTT---SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHh---hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 111 1111111 122356677889999999999888887653 112222 24566677888999999999
Q ss_pred HHHHHHHHHhhhhcChHHH------HhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH-H-------HHhhHHHHH
Q 007918 491 MTILRAISLLAPVMGSEIT------CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-M-------VEKTIRPCL 556 (585)
Q Consensus 491 ~~a~~~l~~l~~~~~~~~~------~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~-~-------~~~~~~~~l 556 (585)
..++..++.+...-..-.+ -+.-+..+..+++|++.++|..|...+...+..-..+ . -.+.++..|
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl 306 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFL 306 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHH
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHH
Confidence 9999999999853222111 3566888999999999999999999998877553221 1 124577777
Q ss_pred HHhcCCC
Q 007918 557 VELTEDP 563 (585)
Q Consensus 557 ~~l~~D~ 563 (585)
..+..|+
T Consensus 307 ~~f~~~~ 313 (335)
T PF08569_consen 307 KDFHTDR 313 (335)
T ss_dssp HTTTTT-
T ss_pred HhCCCCC
Confidence 7777776
No 197
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.50 E-value=0.42 Score=46.81 Aligned_cols=140 Identities=14% Similarity=0.207 Sum_probs=90.5
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC---hhHHHHHHHHHHHH---hhccCc-
Q 007918 161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD---DSVRLLAVEGCAAL---GKLLEP- 233 (585)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d---~~vr~~a~~~l~~l---~~~~~~- 233 (585)
.+..+.-+...+.+.++..|..|++.|.. +.-...++|.+..+..+ -++-..-++.|..+ +..+-+
T Consensus 205 lQlYy~~It~a~~g~~~~~r~eAL~sL~T-------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N 277 (576)
T KOG2549|consen 205 LQLYYKEITEACTGSDEPLRQEALQSLET-------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN 277 (576)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhhcc-------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC
Confidence 34445555666666788899988877653 44456677777776665 22212222222222 222221
Q ss_pred -----hhhhhhhHHHHHHhc----------cCCChHHHHHHHHHHHHHHHHhCCccc--ccchHHHHHHhccCC--hHHH
Q 007918 234 -----QDCVAHILPVIVNFS----------QDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDN--EAEV 294 (585)
Q Consensus 234 -----~~~~~~~~~~l~~~~----------~d~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~ll~d~--~~~v 294 (585)
+.|...++|.+..++ .|..|.+|..++..+..++..++.... ...++..+...+.|+ .+..
T Consensus 278 p~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st 357 (576)
T KOG2549|consen 278 PNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLST 357 (576)
T ss_pred CccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchh
Confidence 567778888887753 367899999999999999998876432 234555666666665 3678
Q ss_pred HHHHHHHHHHHHH
Q 007918 295 RIAAAGKVTKFCR 307 (585)
Q Consensus 295 r~~a~~~l~~l~~ 307 (585)
.+.++..|..+..
T Consensus 358 ~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 358 HYGAIAGLSELGH 370 (576)
T ss_pred hhhHHHHHHHhhh
Confidence 8888888888765
No 198
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.49 E-value=0.11 Score=43.21 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=18.9
Q ss_pred hhhHHHHHHhcc-CCChHHHHHHHHHHHHHHH
Q 007918 238 AHILPVIVNFSQ-DKSWRVRYMVANQLYELCE 268 (585)
Q Consensus 238 ~~~~~~l~~~~~-d~~~~vR~~~~~~l~~l~~ 268 (585)
+.+++.+.++++ +.+|.+|..+++.+|.++.
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA 40 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGA 40 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc
Confidence 345555555443 3457777777777776653
No 199
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=95.48 E-value=1.1 Score=41.80 Aligned_cols=126 Identities=14% Similarity=0.120 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHHhhccCchhhhhh---hHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccc--cchHHHHHHhccC
Q 007918 215 SVRLLAVEGCAALGKLLEPQDCVAH---ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR--MDLVPAYVRLLRD 289 (585)
Q Consensus 215 ~vr~~a~~~l~~l~~~~~~~~~~~~---~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~ll~d 289 (585)
.|...|++.-..+.+.++++...++ ..|-+..++...+..||...+..+....-.+|....+ ..++..+...++|
T Consensus 70 GVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLed 149 (307)
T PF04118_consen 70 GVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLED 149 (307)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccccc
Confidence 3999999999999999998654433 4566666777888899988888887766555542111 1234444455688
Q ss_pred ChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhc
Q 007918 290 NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMA 345 (585)
Q Consensus 290 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~ 345 (585)
++.++-..+...+..+...++.+.+...++-.+. .++.+|..+...+..-.
T Consensus 150 e~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l 200 (307)
T PF04118_consen 150 EGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRL 200 (307)
T ss_pred CCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhC
Confidence 8899999999999999999998866566665553 56778888888776643
No 200
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=3.8 Score=42.10 Aligned_cols=116 Identities=11% Similarity=0.069 Sum_probs=81.5
Q ss_pred HHHHHhHHHHHHHhhc-----CCC---hHHHHHHHHHhHHhhhhhch-----hHHhhhHHHHHHHHhcCCChHHHHHHHH
Q 007918 351 DATIEQLLPIFLSLLK-----DEF---PDVRLNIISKLDQVNQVIGI-----DLLSQSLLPAIVELAEDRHWRVRLAIIE 417 (585)
Q Consensus 351 ~~~~~~l~~~l~~~l~-----d~~---~~vr~~a~~~l~~l~~~~~~-----~~~~~~ll~~l~~~~~~~~~~~r~~~~~ 417 (585)
+.+.+.+++.+...++ +++ ..-.++|+..++.+...+.. ..+...+++.+...++++..-.|..+++
T Consensus 403 e~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace 482 (970)
T COG5656 403 EETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACE 482 (970)
T ss_pred hhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHH
Confidence 3445667777777763 222 23345677777776653332 1233345666666778888888999999
Q ss_pred HhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhC
Q 007918 418 YIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 466 (585)
Q Consensus 418 ~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 466 (585)
.+..+............+.....+++.+.+-.|+..|+.++..+.....
T Consensus 483 ~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q 531 (970)
T COG5656 483 FISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ 531 (970)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh
Confidence 9999977666655566677888889999999999999999999987543
No 201
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=95.30 E-value=0.42 Score=41.27 Aligned_cols=108 Identities=12% Similarity=0.125 Sum_probs=54.0
Q ss_pred HHHHHHHHHhHHhhhhhchhH--HhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCch
Q 007918 371 DVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVY 448 (585)
Q Consensus 371 ~vr~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~ 448 (585)
..-...+..++.+...+|... ....++..+.++-.+++...|..+=.+++.....+|++.+.+ ++|+-... .+...
T Consensus 15 ~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~-~lPLnl~~-~~~~~ 92 (198)
T PF08161_consen 15 HAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLS-ILPLNLDN-ADDSQ 92 (198)
T ss_pred HHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHH-HCCCCccC-CCcCC
Confidence 334444445555555555331 112333444445556666777777777777777777766543 34432211 22233
Q ss_pred HHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHh
Q 007918 449 SIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 480 (585)
Q Consensus 449 ~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~ 480 (585)
.-|.-.+..|......-.-.+|.+.++|....
T Consensus 93 ~~raWLLPlLr~~i~~~~L~fF~~~~lPla~~ 124 (198)
T PF08161_consen 93 PGRAWLLPLLRDHIRNASLSFFVEEFLPLARR 124 (198)
T ss_pred cccchhHHHHHHhccCCChHHHHHHHHHHHHH
Confidence 33444444444443333445566666665543
No 202
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.27 E-value=3.4 Score=40.76 Aligned_cols=209 Identities=10% Similarity=0.080 Sum_probs=111.4
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhCCcc----cccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhHHH
Q 007918 248 SQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPC 321 (585)
Q Consensus 248 ~~d~~~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~ 321 (585)
..|.+|..-..+.+.|..+......+. ....++..++.++..+|+.-|......+..+...+... .+...+...
T Consensus 99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~ 178 (409)
T PF01603_consen 99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNI 178 (409)
T ss_dssp ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHH
T ss_pred ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 567889888888888888877654433 34467888889999999999998888888876654322 233344444
Q ss_pred HHHhccC-CcHHHHHHHHHHHHhhchhhC---HHHHHHhHHHHHHHhhcCCCh-HHHHHHHHHhHHhhhhhchhHHhhhH
Q 007918 322 VKELSSD-SSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIGIDLLSQSL 396 (585)
Q Consensus 322 l~~~~~d-~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~l 396 (585)
+.+...+ ....--..+.+.++.+...+. ++.....+...+..+.+...- .-......++..+...= ..+...+
T Consensus 179 ~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd--p~l~~~~ 256 (409)
T PF01603_consen 179 FYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD--PSLAEPV 256 (409)
T ss_dssp HHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH---GGGHHHH
T ss_pred HHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC--chhHHHH
Confidence 4444432 222223445555666555443 122222233333333343321 11222333333333211 1122334
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHH---HHHHHHHHccCCchHHHHHHHHHH
Q 007918 397 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK---LGALCMQWLQDKVYSIRDAAANNL 458 (585)
Q Consensus 397 l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l 458 (585)
+..+....--.+..-....+..+..+...+++..+... +...+..++++++..|-+.|+..+
T Consensus 257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w 321 (409)
T PF01603_consen 257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFW 321 (409)
T ss_dssp HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGG
T ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44455554455666666777778888777776665543 344456678888999888887655
No 203
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=95.27 E-value=0.91 Score=39.27 Aligned_cols=164 Identities=15% Similarity=0.161 Sum_probs=96.0
Q ss_pred HHHHHHHhHHHHHhhChh--hHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHH
Q 007918 412 RLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLY 489 (585)
Q Consensus 412 r~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~ 489 (585)
-..++..++.+.+.+|.. .....++..+.++-.+++...|..+-.++|.....+|++.+.+ ++|.-... .+....-
T Consensus 17 w~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~-~lPLnl~~-~~~~~~~ 94 (198)
T PF08161_consen 17 WPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLS-ILPLNLDN-ADDSQPG 94 (198)
T ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHH-HCCCCccC-CCcCCcc
Confidence 334555555555555542 1223344445566677778999999999999999999986543 34422221 2233344
Q ss_pred HHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcC------CCCchHHHHHHHHH-HHHHhhhch-----HHHH---hhHHH
Q 007918 490 RMTILRAISLLAPVMGSEITCSRLLPVVINASK------DRVPNIKFNVAKVL-QSLIPIVDQ-----SMVE---KTIRP 554 (585)
Q Consensus 490 R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~------d~~~~vR~~~~~~l-~~l~~~~~~-----~~~~---~~~~~ 554 (585)
|.-.+-.+..-+.+..-.+|.++++|....+-+ .....+.....+++ .++...++. .+.. ..+-+
T Consensus 95 raWLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F~~~a~ 174 (198)
T PF08161_consen 95 RAWLLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESFPSFAK 174 (198)
T ss_pred cchhHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHHHHHHH
Confidence 555555555555555666788888887665432 12233333333333 333333322 1222 55566
Q ss_pred HHHHhcCCCCccHHHHHHHHHHHH
Q 007918 555 CLVELTEDPDVDVRFFATQAIQSI 578 (585)
Q Consensus 555 ~l~~l~~D~~~~Vr~~a~~al~~l 578 (585)
.|.+.+.| .++.|...++++..+
T Consensus 175 ~L~~~L~~-~~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 175 LLGNALYD-QPDLRPIICQALRRL 197 (198)
T ss_pred HHHHHHhc-CcchHHHHHHHHHHH
Confidence 67776666 489999999998865
No 204
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=95.27 E-value=0.45 Score=39.98 Aligned_cols=69 Identities=17% Similarity=0.121 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHH---HhhhHHHHHhhhcCcchHHHHHHHHHHHHh
Q 007918 432 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA---MQHITPQVLEMINNPHYLYRMTILRAISLL 500 (585)
Q Consensus 432 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l 500 (585)
...++|.+.+.+.+....-|-.|...+..+...-+.+.. .+.+++.+...++..+..+..+++.++..+
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~L 107 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQL 107 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 355677777777777777777777777776666333321 133333344445555555556666665555
No 205
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=95.09 E-value=0.74 Score=38.72 Aligned_cols=114 Identities=16% Similarity=0.094 Sum_probs=68.6
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhh---HHHHHHHHHHHHccCCchHHHHHHHHHHHHH---HHHhCH
Q 007918 394 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRL---AEEFGP 467 (585)
Q Consensus 394 ~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l---~~~~~~ 467 (585)
+.++|.+.+-+.+.....|..|...+..+.+..+.+. +.+++++.+-..++..+.+|..+++.+|..+ ....|+
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 4567777776666666666777777777766633222 2345666777788999999999999999998 444454
Q ss_pred HH--HHhhhHHHHHhhhcC-----------cchHHHHHHHHHHHHhhhhcChH
Q 007918 468 EW--AMQHITPQVLEMINN-----------PHYLYRMTILRAISLLAPVMGSE 507 (585)
Q Consensus 468 ~~--~~~~ll~~l~~~l~~-----------~~~~~R~~a~~~l~~l~~~~~~~ 507 (585)
.. +...++|.+.-..+. ....++.-.-+++..+-.+.|++
T Consensus 117 aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 117 ALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 31 234444444321111 12345555555555555555554
No 206
>PF05536 Neurochondrin: Neurochondrin
Probab=95.04 E-value=4.8 Score=41.26 Aligned_cols=175 Identities=14% Similarity=0.114 Sum_probs=116.5
Q ss_pred hHHHHHHHHHHHHhhccCc---hhhhhhhHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhc
Q 007918 215 SVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSW-RVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLL 287 (585)
Q Consensus 215 ~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~~-~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll 287 (585)
..+..|+..+..++.. +. +...-.-+|.+.+.+...+. .+-..++++|..++.. ++ .......++.+.+.+
T Consensus 72 ~~~~LavsvL~~f~~~-~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~ 149 (543)
T PF05536_consen 72 EYLSLAVSVLAAFCRD-PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEII 149 (543)
T ss_pred HHHHHHHHHHHHHcCC-hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHH
Confidence 4677788888877761 11 22334467888887776665 8888899999888732 21 111234566666665
Q ss_pred cCChHHHHHHHHHHHHHHHHhhCHHH------HHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhC--------HHHH
Q 007918 288 RDNEAEVRIAAAGKVTKFCRILNPEL------AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--------KDAT 353 (585)
Q Consensus 288 ~d~~~~vr~~a~~~l~~l~~~~~~~~------~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--------~~~~ 353 (585)
.+ .+.....++..|..+....+.+. ....+++.+...+.......+..++..++.+....+ ...+
T Consensus 150 ~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W 228 (543)
T PF05536_consen 150 PN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKW 228 (543)
T ss_pred Hh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhh
Confidence 55 45677888888888777666332 223556666666666666777788888888765542 2335
Q ss_pred HHhHHHHHHHhhcCC-ChHHHHHHHHHhHHhhhhhchhHH
Q 007918 354 IEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLL 392 (585)
Q Consensus 354 ~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~ 392 (585)
...+...+...+++. .+.-|..+......+...+|.++.
T Consensus 229 ~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl 268 (543)
T PF05536_consen 229 LSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEWL 268 (543)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhh
Confidence 667777787777764 567788898888888888887653
No 207
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=95.02 E-value=3.2 Score=39.09 Aligned_cols=69 Identities=13% Similarity=0.198 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhcc
Q 007918 253 WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS 327 (585)
Q Consensus 253 ~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~ 327 (585)
..-++.+.+.++...+.++.-. ..-+...+.+++|.+..||..|++.|..+|+. .....+.+.+.++++
T Consensus 38 ~k~k~lasq~ip~~fk~fp~la--~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFPSLA--DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLN 106 (460)
T ss_pred hHHHHHHHHHHHHHHhhCchhh--hHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHH
Confidence 3456778888888888776532 24567777888999999999999999998875 223555566666655
No 208
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=94.97 E-value=4.9 Score=40.98 Aligned_cols=68 Identities=22% Similarity=0.148 Sum_probs=46.4
Q ss_pred HHHHhcHHHHHHhhcCCC----CchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007918 507 EITCSRLLPVVINASKDR----VPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 579 (585)
Q Consensus 507 ~~~~~~i~~~l~~~l~d~----~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~ 579 (585)
+.+.++++..+-++..|. ...+|..+++.+..+...-. ...-+-+.+..-|+.+.+|--|-+|.+.|.
T Consensus 686 e~fr~~iln~l~nY~~d~rGDVgs~iR~~a~klm~SfL~kD~-----~~~~~y~iR~~~dki~~lR~l~yqa~eqI~ 757 (993)
T COG5234 686 EEFRKEILNVLSNYLTDTRGDVGSWIRKPAMKLMSSFLVKDS-----SGKKLYIIRQTFDKIDSLRGLAYQALEQIR 757 (993)
T ss_pred HHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhccc-----cCCchhHHHHhhcccHHHHhhhhhhhhhee
Confidence 346677777777777654 56689988888877543211 123345667778899999988888877653
No 209
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.95 E-value=1.2 Score=37.33 Aligned_cols=111 Identities=18% Similarity=0.158 Sum_probs=62.8
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHH---hhhHHHHHhhhcCc-chHHHHHHHHHHHHhhhhcCh--
Q 007918 433 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM---QHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGS-- 506 (585)
Q Consensus 433 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~ll~~l~~~l~~~-~~~~R~~a~~~l~~l~~~~~~-- 506 (585)
.++..-+.+++.+++..-|..++..++..++..+.+.+. ...+..+...++.+ ...++..++.++..+......
T Consensus 24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 334455556666666666666666666666665554432 33444444444443 245666666666666543321
Q ss_pred ----HH---HHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch
Q 007918 507 ----EI---TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 545 (585)
Q Consensus 507 ----~~---~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~ 545 (585)
+. ....+++.++.++++ ......++.++..+...++.
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 10 134455556666655 56677888888888776554
No 210
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=94.92 E-value=1.1 Score=46.06 Aligned_cols=64 Identities=20% Similarity=0.271 Sum_probs=46.7
Q ss_pred HHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhh-----ccccccc-ccCCchHHHHHHHHHHhcccc
Q 007918 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKE-----LIPFLSE-NNDDDDEVLLAMAEELGVFIP 76 (585)
Q Consensus 11 i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~-----l~~~l~~-~~d~~~~vr~~~~~~l~~l~~ 76 (585)
+.+-+..+.++++.....|...+..++. |.+..+.+ =+|.|.. ..+.+++|++.++-+|.+++.
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcf--gd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf 304 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCF--GDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVF 304 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHh--hhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhc
Confidence 5677788889999999999888888764 33333222 1444555 566789999999999999865
No 211
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=94.77 E-value=7.6 Score=43.48 Aligned_cols=325 Identities=14% Similarity=0.114 Sum_probs=157.7
Q ss_pred HHHHHHHHhhcC---CCchHHHHHHHHhHHHHHhhhcccchH---HHHHHHHHHhccChhHHHHHHHHHHHHhhc---cC
Q 007918 162 TELRSIYTQLCQ---DDMPMVRRSAASNLGKFAATVEPAHLK---TDIMSIFEDLTQDDSVRLLAVEGCAALGKL---LE 232 (585)
Q Consensus 162 ~~l~~~l~~l~~---d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~l~~d~~vr~~a~~~l~~l~~~---~~ 232 (585)
...++++.++++ +.+.+.|+.+-.+|-+++...+++... ..+++++. .+|..+..+...+-.. ..
T Consensus 234 SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLe------QIraYC~~~~~~lqar~~~~a 307 (2195)
T KOG2122|consen 234 SGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLE------QIRAYCETCWTWLQARGPAIA 307 (2195)
T ss_pred ccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHH------HHHHHHHHHHHHHHhcCCCCC
Confidence 345667776664 235678888888888877655443222 22333333 2343333333332221 11
Q ss_pred chhhhhhhHHHHHHhccC-CChHHHHHHHH--HHHHHHHHhCCcccccchHHHHHHh----ccCCh-HHHHHHHHHHHHH
Q 007918 233 PQDCVAHILPVIVNFSQD-KSWRVRYMVAN--QLYELCEAVGPEPTRMDLVPAYVRL----LRDNE-AEVRIAAAGKVTK 304 (585)
Q Consensus 233 ~~~~~~~~~~~l~~~~~d-~~~~vR~~~~~--~l~~l~~~~~~~~~~~~l~~~l~~l----l~d~~-~~vr~~a~~~l~~ 304 (585)
+..+...+-+.+..+.+- -+.+.|++..+ .|..|++ |+..-..+ .+|.. ..+|+.+..+|..
T Consensus 308 pa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIae----------Ll~vDh~mhgp~tnd~~~~aLRrYa~MALTN 377 (2195)
T KOG2122|consen 308 PASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAE----------LLQVDHEMHGPETNDGECNALRRYAGMALTN 377 (2195)
T ss_pred CcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHH----------HHHHHHHhcCCCCCcHHHHHHHHHHHHHhhc
Confidence 223333343333333321 23344443321 2222221 22211111 22322 4577777777765
Q ss_pred HHHhhCHH----HH--HHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhC--HHHHHH---hHHHHHHHhhcCCChHHH
Q 007918 305 FCRILNPE----LA--IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--KDATIE---QLLPIFLSLLKDEFPDVR 373 (585)
Q Consensus 305 l~~~~~~~----~~--~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~---~l~~~l~~~l~d~~~~vr 373 (585)
+. ||.. .+ ...++..+...+.....++....+..|.++..... ....+. .+..+..-.+....+..-
T Consensus 378 LT--FGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTL 455 (2195)
T KOG2122|consen 378 LT--FGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTL 455 (2195)
T ss_pred cc--cccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchH
Confidence 42 1211 00 13345555555555555666666666766654332 111111 122223333444444445
Q ss_pred HHHHHHhHHhhhhhchhHH----hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhC-----hhhH-----HHHHHHHH
Q 007918 374 LNIISKLDQVNQVIGIDLL----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-----VGFF-----DDKLGALC 439 (585)
Q Consensus 374 ~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~-----~~~~-----~~~l~~~l 439 (585)
++.+.+|-++..+...++. .+.-+-.|..++.-+...--...++.-+.|.+++. .+.+ ....+..+
T Consensus 456 KavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~L 535 (2195)
T KOG2122|consen 456 KAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTL 535 (2195)
T ss_pred HHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHH
Confidence 5666666666554433221 12223334443332211111222222222222211 1111 12356777
Q ss_pred HHHccCCchHHHHHHHHHHHHHHHHhCHHH---HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhc
Q 007918 440 MQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM 504 (585)
Q Consensus 440 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~ 504 (585)
++.|+.....|...++.+|.+|......+. +....++.+.+++.+++..+-+.++.++.++..+-
T Consensus 536 LQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 536 LQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred HHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 888888888888888888888876443321 34567888888999999888889999998887643
No 212
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.77 E-value=2.2 Score=42.15 Aligned_cols=73 Identities=16% Similarity=0.216 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHc----------cCCchHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhcCc--chHHHHHHHH
Q 007918 430 FFDDKLGALCMQWL----------QDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNP--HYLYRMTILR 495 (585)
Q Consensus 430 ~~~~~l~~~l~~~l----------~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~~~--~~~~R~~a~~ 495 (585)
.+...++|.++.++ .|..|.+|..|+..+..+++.++..+ ....+...+.+.+.|+ .+.....++.
T Consensus 284 pYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~ 363 (576)
T KOG2549|consen 284 PYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIA 363 (576)
T ss_pred hHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHH
Confidence 34456777776664 47889999999999999999888753 3456677777777666 4778888888
Q ss_pred HHHHhhh
Q 007918 496 AISLLAP 502 (585)
Q Consensus 496 ~l~~l~~ 502 (585)
.+..+..
T Consensus 364 gL~~lg~ 370 (576)
T KOG2549|consen 364 GLSELGH 370 (576)
T ss_pred HHHHhhh
Confidence 8877654
No 213
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=3.7 Score=38.36 Aligned_cols=173 Identities=14% Similarity=0.085 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHhhCHH--HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHH--HH-HhHHHHHHHhh-
Q 007918 292 AEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TI-EQLLPIFLSLL- 365 (585)
Q Consensus 292 ~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~-~~l~~~l~~~l- 365 (585)
.+-+..|+..|..+++.+... ......+..+...+++.+..+|..|+..++..+..-++.. ++ ...++.+...+
T Consensus 97 le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls 176 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS 176 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc
Confidence 444555555555555544332 1111222333335566666666666666666554433211 11 11333333333
Q ss_pred cCCChHHHHHHHHHhHHhhhhhchh--HHhh-hHHHHHHHHhcC--CChHHHHHHHHHhHHHHHhhC--hhhHHHHH-HH
Q 007918 366 KDEFPDVRLNIISKLDQVNQVIGID--LLSQ-SLLPAIVELAED--RHWRVRLAIIEYIPLLASQLG--VGFFDDKL-GA 437 (585)
Q Consensus 366 ~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~-~ll~~l~~~~~~--~~~~~r~~~~~~l~~l~~~~~--~~~~~~~l-~~ 437 (585)
.+.+..+|..|+-+++.+.....+- .+.. .=...+...+++ .+.+.+..++..++.+...-. .+.+.... ..
T Consensus 177 ~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~ 256 (342)
T KOG2160|consen 177 SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQR 256 (342)
T ss_pred cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhH
Confidence 4556678888888888887654322 1100 002344555555 566677777777777765322 11222222 22
Q ss_pred HHHHHccCCchHHHHHHHHHHHHHHHH
Q 007918 438 LCMQWLQDKVYSIRDAAANNLKRLAEE 464 (585)
Q Consensus 438 ~l~~~l~d~~~~vr~~a~~~l~~l~~~ 464 (585)
.+..+.....++++++++.++-.+...
T Consensus 257 ~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 257 VLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 344555667778888888777666554
No 214
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=94.53 E-value=4.9 Score=38.90 Aligned_cols=220 Identities=14% Similarity=0.048 Sum_probs=125.6
Q ss_pred HhHHHHHHH-hhcCCChHHHHHHHHHhHHhhhhhc-hhHHhhhHHHHHH--HHhcC-CChHHHHHHHHHhHHHHHhh-Ch
Q 007918 355 EQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIV--ELAED-RHWRVRLAIIEYIPLLASQL-GV 428 (585)
Q Consensus 355 ~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~ll~~l~--~~~~~-~~~~~r~~~~~~l~~l~~~~-~~ 428 (585)
..+.+.+.. ++.+. .+||.++...+..+..... ...+.+.=++.+. .+.++ ++..-|..|+..+..+.+.- |.
T Consensus 24 ~~~~~~i~~~lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~ 102 (371)
T PF14664_consen 24 SFFGERIQCMLLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP 102 (371)
T ss_pred HHHHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence 334444443 44444 8999998888876654321 1111111122222 22233 45567999999999988763 45
Q ss_pred hhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChH-
Q 007918 429 GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE- 507 (585)
Q Consensus 429 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~- 507 (585)
..+...++..+....++++...|..++.++..++-..+.-.+.-.-+..+.+.+.|+....-...+.++-.+...-..-
T Consensus 103 ~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~ 182 (371)
T PF14664_consen 103 KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRK 182 (371)
T ss_pred ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhh
Confidence 5566678888888889999999999999999987653332223334566666666666667777777777776533221
Q ss_pred -----HHHhcHHHHHHhh----cCCCCc--hHHHHHHHHHHHHHhhhch------HHHHhhHHHHHHHhcCCCCccHHHH
Q 007918 508 -----ITCSRLLPVVINA----SKDRVP--NIKFNVAKVLQSLIPIVDQ------SMVEKTIRPCLVELTEDPDVDVRFF 570 (585)
Q Consensus 508 -----~~~~~i~~~l~~~----l~d~~~--~vR~~~~~~l~~l~~~~~~------~~~~~~~~~~l~~l~~D~~~~Vr~~ 570 (585)
...+.++..+.+. .++ +. +.-.++..++..+..+.++ +.+ .-+..|...+.-|.+++|..
T Consensus 183 yl~~~~dL~~l~apftd~~~~~~~~-~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~--~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 183 YLRPGFDLESLLAPFTDFHYRKIKD-DRELERLQASAKAISTLLRSWPGLLYLSMNDF--RGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhcCCccHHHHHHhhhhhhcccccc-chHHHHHHHHHHHHHHHHhcCCceeeeecCCc--hHHHHHHHHHcCCCHHHHHH
Confidence 1123333333333 111 22 2334556666666655432 111 23333444445577778777
Q ss_pred HHHHHHHH
Q 007918 571 ATQAIQSI 578 (585)
Q Consensus 571 a~~al~~l 578 (585)
....+-.+
T Consensus 260 Ildll~dl 267 (371)
T PF14664_consen 260 ILDLLFDL 267 (371)
T ss_pred HHHHHHHH
Confidence 66655443
No 215
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.49 E-value=7.5 Score=40.93 Aligned_cols=364 Identities=13% Similarity=0.100 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcC-----ccchhhHHhhhHhhcCCCChHHHHHHHHHHHhhc----
Q 007918 102 VRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEW-----FTARVSACGLFHIAYPSAPDILKTELRSIYTQLC---- 172 (585)
Q Consensus 102 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~-----~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~---- 172 (585)
.|...-..+-..-..++ +.+.+.+...+.++..+.. +.+-.+++..+..++.+.+......+...+....
T Consensus 440 YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~ 518 (982)
T KOG2022|consen 440 YRKDISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKL 518 (982)
T ss_pred HHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhcccccc
Confidence 33333333333333333 3444455666666554432 4555666778888888888765444443333322
Q ss_pred CCCchHHHHHHHHhHHHHHhhhcc-cchHHHHHHHHHHhccChhHHHHHHHHHHHHhhccCch--hhhhhhHHHHHHhcc
Q 007918 173 QDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQDDSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQ 249 (585)
Q Consensus 173 ~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~l~~d~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~ 249 (585)
+-.++..-..+...+|.++..+++ +...+..+|.+.+-++..+.-..++..+..+++.++.+ .+...++......+.
T Consensus 519 S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~ 598 (982)
T KOG2022|consen 519 SAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLN 598 (982)
T ss_pred ccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhc
Confidence 223677778888999998887754 33455556665555544445555666788888876652 344445555555444
Q ss_pred C--CChHHHHHHHHHHHHHHHHhCCcccccchH---HHHHHhcc------CChHHHHHHHHHHHH---HHHHhhC-----
Q 007918 250 D--KSWRVRYMVANQLYELCEAVGPEPTRMDLV---PAYVRLLR------DNEAEVRIAAAGKVT---KFCRILN----- 310 (585)
Q Consensus 250 d--~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~---~~l~~ll~------d~~~~vr~~a~~~l~---~l~~~~~----- 310 (585)
. -....|....+++|.+......+..++.+. ..+..-++ -++++-+...+-.+. .+...+.
T Consensus 599 ~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~ 678 (982)
T KOG2022|consen 599 KSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDI 678 (982)
T ss_pred ccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 3 245678889999999988877544444322 22222111 122333333333333 3332221
Q ss_pred -----------------HHHHHHhhHHHHHHhcc--CCcHHHHHHHHHHHHhhchhhCHH---HHHHhHHHHHHHhhcCC
Q 007918 311 -----------------PELAIQHILPCVKELSS--DSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDE 368 (585)
Q Consensus 311 -----------------~~~~~~~i~~~l~~~~~--d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~ 368 (585)
.-.+..+++|.+.+.++ -.+..|-..++.....=....+.. ...+.+.+.+..+...+
T Consensus 679 ~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~ 758 (982)
T KOG2022|consen 679 IDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSC 758 (982)
T ss_pred ccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccch
Confidence 01233556666665543 223344444444433322222222 23344444444433322
Q ss_pred ChHHHHHHH-HHhHHhhhhhch-hHHh---hhHHHHHHHHhcC----CChHHHHHHHHHhHHHHHhhC------hhhHHH
Q 007918 369 FPDVRLNII-SKLDQVNQVIGI-DLLS---QSLLPAIVELAED----RHWRVRLAIIEYIPLLASQLG------VGFFDD 433 (585)
Q Consensus 369 ~~~vr~~a~-~~l~~l~~~~~~-~~~~---~~ll~~l~~~~~~----~~~~~r~~~~~~l~~l~~~~~------~~~~~~ 433 (585)
. .+-.... ..+.......+. +... .........+.++ .++..-...+..+..+.+..+ ...+..
T Consensus 759 ~-a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts 837 (982)
T KOG2022|consen 759 L-AVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTS 837 (982)
T ss_pred H-HHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHH
Confidence 1 1111100 011111111010 0000 0111111112222 345555556666666555442 223455
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCH
Q 007918 434 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 467 (585)
Q Consensus 434 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 467 (585)
.+.+..+.++..++...-.++...+..+...-+.
T Consensus 838 ~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s 871 (982)
T KOG2022|consen 838 LILICAFILLNSPEPTTIRAASQFLTALATYATS 871 (982)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHhhccc
Confidence 6677888889988888878888888887665443
No 216
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.38 E-value=1 Score=41.77 Aligned_cols=134 Identities=21% Similarity=0.243 Sum_probs=69.1
Q ss_pred hhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcc----cccc----hHHHHHHhcc--------CChHHHHHHH
Q 007918 235 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRMD----LVPAYVRLLR--------DNEAEVRIAA 298 (585)
Q Consensus 235 ~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~----~~~~----l~~~l~~ll~--------d~~~~vr~~a 298 (585)
.....++|.+..+++|.++.+|..++.++..+...++... .... +.+.+..++. +++..+-..+
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~a 194 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAA 194 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHH
Confidence 3455667777777777777777777777777776554433 1112 2223333332 4445566666
Q ss_pred HHHHHHHHHhhCH---H----HH----HHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHH--HHHhHHHHHHHhh
Q 007918 299 AGKVTKFCRILNP---E----LA----IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLL 365 (585)
Q Consensus 299 ~~~l~~l~~~~~~---~----~~----~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l 365 (585)
..++..++..... . .+ .+.++..+....+-++++++...++.+..+...+|... +.+.++|.+.+.+
T Consensus 195 y~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l 274 (282)
T PF10521_consen 195 YPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQIL 274 (282)
T ss_pred HHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 6666666543210 0 11 11122221111122346666777777766666665432 3555666666655
Q ss_pred cCC
Q 007918 366 KDE 368 (585)
Q Consensus 366 ~d~ 368 (585)
.++
T Consensus 275 ~np 277 (282)
T PF10521_consen 275 ENP 277 (282)
T ss_pred cCC
Confidence 554
No 217
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.37 E-value=0.72 Score=44.08 Aligned_cols=139 Identities=14% Similarity=0.175 Sum_probs=78.0
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC---hhHH------HHHHHHHHHHhhc-
Q 007918 161 KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD---DSVR------LLAVEGCAALGKL- 230 (585)
Q Consensus 161 ~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d---~~vr------~~a~~~l~~l~~~- 230 (585)
.+....-+...+.+.+...|..|...|. .+.....++|.+..+..+ -++. ...+....++...
T Consensus 176 lq~yf~~It~a~~~~~~~~r~~aL~sL~-------tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~ 248 (343)
T cd08050 176 LQLYFEEITEALVGSNEEKRREALQSLR-------TDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNP 248 (343)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhc-------cCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCC
Confidence 3444444555555566777777665544 233445566666665544 1121 1222233333322
Q ss_pred -cCchhhhhhhHHHHHHhc----------cCCChHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHHhccCCh--HHHH
Q 007918 231 -LEPQDCVAHILPVIVNFS----------QDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNE--AEVR 295 (585)
Q Consensus 231 -~~~~~~~~~~~~~l~~~~----------~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~ll~d~~--~~vr 295 (585)
+.-+.+...++|.+..++ .+..|.+|..++..++.++..++... ....+...+.+.+.|+. ....
T Consensus 249 ~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~ 328 (343)
T cd08050 249 NLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTH 328 (343)
T ss_pred CCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchh
Confidence 111556677788777654 35678999999999999998887642 12234444445555543 3346
Q ss_pred HHHHHHHHHHH
Q 007918 296 IAAAGKVTKFC 306 (585)
Q Consensus 296 ~~a~~~l~~l~ 306 (585)
..|+.+|..++
T Consensus 329 YGAi~GL~~lG 339 (343)
T cd08050 329 YGAIVGLSALG 339 (343)
T ss_pred hHHHHHHHHhC
Confidence 67777776664
No 218
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=94.37 E-value=6 Score=39.25 Aligned_cols=214 Identities=12% Similarity=0.064 Sum_probs=101.9
Q ss_pred hhhHHHHHHHHHHHHHHhhcCh--hhHHhhHHHHHHHhhcCc-CccchhhHHhhhHhhcCCCCh-------HHHHHHHHH
Q 007918 98 EETCVRDKAVESLCRIGSQMRE--SDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPD-------ILKTELRSI 167 (585)
Q Consensus 98 ~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~-------~~~~~l~~~ 167 (585)
+|+.+-+..++.+..+-+.+.+ ..+.+.+...+...++++ ++.--....+.++.+.....+ .....++|.
T Consensus 42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~ 121 (435)
T PF03378_consen 42 ENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPP 121 (435)
T ss_dssp C-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHH
Confidence 3444434444444433333322 223344555555555554 344444455555555444322 245667777
Q ss_pred HHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC--hhHH---HHHHHHHHHHhhccCc----hhhhh
Q 007918 168 YTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD--DSVR---LLAVEGCAALGKLLEP----QDCVA 238 (585)
Q Consensus 168 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d--~~vr---~~a~~~l~~l~~~~~~----~~~~~ 238 (585)
+...++.+-.+.---+.+.+..+.+..+.....+....++..++.. |+-| -+.+..+.++.+..+. ....+
T Consensus 122 f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~ 201 (435)
T PF03378_consen 122 FQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLE 201 (435)
T ss_dssp HHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHH
Confidence 7777776666666666666666666554122211222222222222 2211 1222233333333222 23456
Q ss_pred hhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccc---cchHHHHHHhcc-CChHHHHHHHHHHHHHHHHhhCHHH
Q 007918 239 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR---MDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPEL 313 (585)
Q Consensus 239 ~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~ll~-d~~~~vr~~a~~~l~~l~~~~~~~~ 313 (585)
.++..+.+++..+..+ ..+...+..+...++.+... ..++..+++.+. .+.+...+..+..++.++-..|++.
T Consensus 202 ~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~ 278 (435)
T PF03378_consen 202 PILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDF 278 (435)
T ss_dssp HHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHH
Confidence 6888888888876543 55778888888887764322 234444444443 4446666666666676666666653
No 219
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.36 E-value=1.2 Score=41.39 Aligned_cols=133 Identities=14% Similarity=0.088 Sum_probs=78.6
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHH---H-----HhhhHHHHHhhhc--------CcchHHHHHHHHH
Q 007918 433 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---A-----MQHITPQVLEMIN--------NPHYLYRMTILRA 496 (585)
Q Consensus 433 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~-----~~~ll~~l~~~l~--------~~~~~~R~~a~~~ 496 (585)
.-++|.++.++.|.+.++|..++.++..+....+... + .+.+.+.+..++. +....+-..+..+
T Consensus 118 ~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 118 PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 4467777777777777777777777777776554432 1 1223333333332 3345555666666
Q ss_pred HHHhhhhc---Ch----HHHHhcHHHHHHhhc----CCCCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCC
Q 007918 497 ISLLAPVM---GS----EITCSRLLPVVINAS----KDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDP 563 (585)
Q Consensus 497 l~~l~~~~---~~----~~~~~~i~~~l~~~l----~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~l~~D~ 563 (585)
+..+++.. +. ..+...+...++... +-+.+.++...++.+..++..+|.. .+.+.+++.+.+.+.++
T Consensus 198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 66664421 11 111122222233222 2235888899999999988887764 56678899999888877
Q ss_pred Cc
Q 007918 564 DV 565 (585)
Q Consensus 564 ~~ 565 (585)
+.
T Consensus 278 f~ 279 (282)
T PF10521_consen 278 FG 279 (282)
T ss_pred Cc
Confidence 53
No 220
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=94.34 E-value=0.72 Score=39.70 Aligned_cols=68 Identities=15% Similarity=0.129 Sum_probs=35.6
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhh
Q 007918 434 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV 503 (585)
Q Consensus 434 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~ 503 (585)
..++.+.++..+++..||..|+..++.+.+. |-- .....+|.++.+.+|++..+|..|...+..+.+.
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-GLv-nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQ-GLV-NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-CCC-ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 3444445555555566666666665555442 210 1244555555555555555555555555555543
No 221
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=94.26 E-value=5.4 Score=38.35 Aligned_cols=218 Identities=16% Similarity=0.062 Sum_probs=104.4
Q ss_pred HHHHHHHHHhhchhhCHHHHHHhHHHHHHHhh-cCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHH
Q 007918 334 RSALASVIMGMAPLLGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVR 412 (585)
Q Consensus 334 r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r 412 (585)
|...++.+..+.. .+ ..+.+...+..++ ++.++.....++.++..-...++.+ ..+.++..+.+-++|+...+|
T Consensus 4 r~~~~~~L~~l~~-~~---~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~-~~~~~~~~~~kGl~~kk~~vR 78 (339)
T PF12074_consen 4 RVLHASMLSSLPS-SS---LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSE-LPKKVVDAFKKGLKDKKPPVR 78 (339)
T ss_pred HHHHHHHHHhCCC-cc---hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcC-CCHHHHHHHHHHhcCCCCcHH
Confidence 4444555544443 11 2333444444443 3456666777777766666555221 224566667777777777677
Q ss_pred HHHHHHhHHHHH---hhChhhHHHHHHHHHHHHc----cCCchHHH----HHHHHHHHHHHHHhCHH-----HH------
Q 007918 413 LAIIEYIPLLAS---QLGVGFFDDKLGALCMQWL----QDKVYSIR----DAAANNLKRLAEEFGPE-----WA------ 470 (585)
Q Consensus 413 ~~~~~~l~~l~~---~~~~~~~~~~l~~~l~~~l----~d~~~~vr----~~a~~~l~~l~~~~~~~-----~~------ 470 (585)
..-+..++.... ......+...++|.+.+.+ ..+..... .++.-.+. +....... ..
T Consensus 79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~ 157 (339)
T PF12074_consen 79 RAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLAL 157 (339)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhcc
Confidence 777777666654 1111122233444444433 23322211 11111111 00000000 00
Q ss_pred --Hhh--hHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHH---HHhcHHHHHHhhcCCC--CchHHHHHHHHHHHHHh
Q 007918 471 --MQH--ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI---TCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIP 541 (585)
Q Consensus 471 --~~~--ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~l~d~--~~~vR~~~~~~l~~l~~ 541 (585)
.+. +-+.+...+. ....-...+.++..+...+.... ....+...++.++.++ .+.||..+...+..++.
T Consensus 158 ~~kps~ll~~kvyskl~--~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~ 235 (339)
T PF12074_consen 158 DPKPSFLLSEKVYSKLA--SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYA 235 (339)
T ss_pred CCCcchhcCHHHHhccC--CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 000 1112222211 22223344445544544333211 1244556677777777 89999999999999987
Q ss_pred hhchHHHHhhHHHHHHHhc
Q 007918 542 IVDQSMVEKTIRPCLVELT 560 (585)
Q Consensus 542 ~~~~~~~~~~~~~~l~~l~ 560 (585)
..+.. +...++..+...+
T Consensus 236 ~~~~~-l~~~li~~l~~~l 253 (339)
T PF12074_consen 236 SNPEL-LSKSLISGLWKWL 253 (339)
T ss_pred hChHH-HHHHHHHHHHHHH
Confidence 75543 5556666666643
No 222
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.25 E-value=12 Score=42.28 Aligned_cols=149 Identities=10% Similarity=0.022 Sum_probs=94.4
Q ss_pred HHHHHHHH-HHccCCchHHHHHHHHHHHHHHHH--hC-HHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHH
Q 007918 433 DKLGALCM-QWLQDKVYSIRDAAANNLKRLAEE--FG-PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI 508 (585)
Q Consensus 433 ~~l~~~l~-~~l~d~~~~vr~~a~~~l~~l~~~--~~-~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~ 508 (585)
+.++..+. ....+..|.||.+++..+..+.-. ++ .+...+.+-..+...++|..-.+|..|+.++..+..+-...
T Consensus 1525 ~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~- 1603 (1710)
T KOG1851|consen 1525 PEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQ- 1603 (1710)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccc-
Confidence 34444444 234577899999999988877542 22 12234567777888899999999999999999988743222
Q ss_pred HHhcHHHHHHhhc--CCCCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 007918 509 TCSRLLPVVINAS--KDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 583 (585)
Q Consensus 509 ~~~~i~~~l~~~l--~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~~l~ 583 (585)
+............ ...+...+-.+...++.++..++-. .+..+.+..+....+|+ ..++..+.+++..+.+..+
T Consensus 1604 ~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth~ 1681 (1710)
T KOG1851|consen 1604 FVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTHA 1681 (1710)
T ss_pred cchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHhh
Confidence 1121111122111 2223445566788888887766432 34445555555556666 6689999999999887643
No 223
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=94.24 E-value=0.37 Score=40.06 Aligned_cols=132 Identities=16% Similarity=0.177 Sum_probs=87.0
Q ss_pred CCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhc---ChHHH-HhcHHHHHHhh
Q 007918 445 DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM---GSEIT-CSRLLPVVINA 520 (585)
Q Consensus 445 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~---~~~~~-~~~i~~~l~~~ 520 (585)
....++|..+.-++.++.+..+ +.+.+.+...+...+.+....-...++.++..+.+.. +...+ .+.+++.+...
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~-~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAR-EEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 4567788888888888864433 3356666667777776666666777777777776632 22322 56777888877
Q ss_pred cC--CCCchHHHHHHHHHHHHHhh-hchHHHHhhHHHHHHHhc-CCCCcc-HHHHHHHHHHH
Q 007918 521 SK--DRVPNIKFNVAKVLQSLIPI-VDQSMVEKTIRPCLVELT-EDPDVD-VRFFATQAIQS 577 (585)
Q Consensus 521 l~--d~~~~vR~~~~~~l~~l~~~-~~~~~~~~~~~~~l~~l~-~D~~~~-Vr~~a~~al~~ 577 (585)
.. .++..+...+++++..-+.. -.-..+.+...+.|..+. .+++.. ||..|.-+|-.
T Consensus 95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 77 66788888888888775432 122356677888899876 455555 78777766643
No 224
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=94.18 E-value=7.5 Score=39.65 Aligned_cols=70 Identities=24% Similarity=0.371 Sum_probs=40.2
Q ss_pred hHHHHHHHhhc-CCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHH----HHhcCCChHHHHHHHHHhHHHHHh
Q 007918 356 QLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV----ELAEDRHWRVRLAIIEYIPLLASQ 425 (585)
Q Consensus 356 ~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~----~~~~~~~~~~r~~~~~~l~~l~~~ 425 (585)
.++-.+.+.++ ++...+|-+++.-++.+.+..-++...+.+.|.+. .++.|++|.++..++++++.+++.
T Consensus 479 qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~ 553 (559)
T PF14868_consen 479 QVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAER 553 (559)
T ss_pred HHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc
Confidence 33444445543 33345677777777776665544443344444443 345677777777777777776654
No 225
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.10 E-value=9.1 Score=40.36 Aligned_cols=172 Identities=9% Similarity=0.089 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHhhccCchhhhhhhHHHHHHhccCCC-----hHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcc--
Q 007918 216 VRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS-----WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR-- 288 (585)
Q Consensus 216 vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~-----~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~-- 288 (585)
.|...-..+-..-+.++ +...+.+...+.+++.|.+ |..-.+++-++..++..+|.... ..+|.+++..-
T Consensus 440 YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~--~~i~rl~~~~asi 516 (982)
T KOG2022|consen 440 YRKDISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETES--TWIPRLFETSASI 516 (982)
T ss_pred HHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchh--HHHHHHHHhcccc
Confidence 56665566665555555 4456667777777777665 88888999999999999887654 34666666542
Q ss_pred ---CChHHHHHHHHHHHHHHHHhhCHH-HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHH--HHHHhHHHHHH
Q 007918 289 ---DNEAEVRIAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFL 362 (585)
Q Consensus 289 ---d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~ 362 (585)
-.++..-..+...++.++..++.. .+.+..+|.+.+.+..+. .-..+...+..+++....+ .+.+.++....
T Consensus 517 k~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk--~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~ 594 (982)
T KOG2022|consen 517 KLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSK--ESEQAISTLKTLCETCPESLDPYADQFSAVCY 594 (982)
T ss_pred ccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCch--HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHH
Confidence 236778888999999999888765 334555677766665333 3334444577777665432 34455555555
Q ss_pred HhhcCC--ChHHHHHHHHHhHHhhhhhchhHH
Q 007918 363 SLLKDE--FPDVRLNIISKLDQVNQVIGIDLL 392 (585)
Q Consensus 363 ~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~ 392 (585)
..+... .+..|..+..++|.+...+.++..
T Consensus 595 e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~ 626 (982)
T KOG2022|consen 595 EVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEI 626 (982)
T ss_pred HHhcccccCchHHHHHHHHHHHHHHhccHHhH
Confidence 555543 367899999999999988876544
No 226
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=94.10 E-value=0.2 Score=37.00 Aligned_cols=69 Identities=23% Similarity=0.361 Sum_probs=49.3
Q ss_pred cCCchHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhcCc--chHHHHHHHHHHHHhhhhcChHHHHhcHHHH
Q 007918 444 QDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEITCSRLLPV 516 (585)
Q Consensus 444 ~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~~~--~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~ 516 (585)
.|..|.+|..|.+.++.++..++... ....+...+.+.+.|+ +...+-.|+..+..+. ++.+..-++|.
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG----~~~vr~~ilP~ 88 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG----PEAVRALILPN 88 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH----HHHHHHhhccC
Confidence 36789999999999999999887542 4567777788877766 4667778888877763 34333444443
No 227
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=93.94 E-value=0.39 Score=39.91 Aligned_cols=94 Identities=15% Similarity=0.192 Sum_probs=60.8
Q ss_pred chhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChH-----HHHHHHHHHHhh
Q 007918 97 VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQL 171 (585)
Q Consensus 97 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-----~~~~l~~~l~~l 171 (585)
...+.+|..+.-++.++. ...++.+.+.+..++.....+........+...+..+++..++- ..+.+++.+..+
T Consensus 16 ~~~~~~r~~a~v~l~k~l-~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~ 94 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLL-DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL 94 (157)
T ss_dssp TTSCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence 567788999999998886 33344566777888887776665556677778888887776542 234455555555
Q ss_pred cC--CCchHHHHHHHHhHHHHH
Q 007918 172 CQ--DDMPMVRRSAASNLGKFA 191 (585)
Q Consensus 172 ~~--d~~~~vr~~a~~~l~~l~ 191 (585)
+. .++..+...+++++..-+
T Consensus 95 ~~~~~~~~~~~~~~lell~aAc 116 (157)
T PF11701_consen 95 ASRKSKDRKVQKAALELLSAAC 116 (157)
T ss_dssp HH-CTS-HHHHHHHHHHHHHHT
T ss_pred HhcccCCHHHHHHHHHHHHHHH
Confidence 55 455556666666555443
No 228
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=93.84 E-value=6.4 Score=37.66 Aligned_cols=193 Identities=14% Similarity=0.168 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChHHHHHHHHHHHhhcCCCchHHHHHHH
Q 007918 105 KAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAA 184 (585)
Q Consensus 105 ~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~ 184 (585)
++...+..+......++...+++-++..+...+..+++ ++... ....++.....+..+++++++-+-....
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~-----lf~~~----a~~~k~~~~~~fl~ll~r~d~~iv~~~~ 135 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVD-----LFHDY----AHKLKRTEWLSFLNLLNRQDTFIVEMSF 135 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHH-----HHHHH----HHhhhccchHHHHHHHhcCChHHHHHHH
Confidence 44555556666666666666666666655544422221 11111 1112233356677778888887777666
Q ss_pred HhHHHHHhhhcc---cchHHHHHHHHHHhccC---hhHHHHHHHHHHHHhhccCc------hhhhhhhHHHHHHhccCCC
Q 007918 185 SNLGKFAATVEP---AHLKTDIMSIFEDLTQD---DSVRLLAVEGCAALGKLLEP------QDCVAHILPVIVNFSQDKS 252 (585)
Q Consensus 185 ~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d---~~vr~~a~~~l~~l~~~~~~------~~~~~~~~~~l~~~~~d~~ 252 (585)
..+..++..-.. ....+.....+...++. ...+..++.++..+...-.- ......+++.+. .+..+
T Consensus 136 ~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~--s~~~~ 213 (442)
T KOG2759|consen 136 RILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILA--STKCG 213 (442)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHh--ccCcc
Confidence 776666654221 11223344444544444 34666677777777653221 111122333332 33345
Q ss_pred hHHHHHHHHHHHHHHHH--hCCcccccchHHHHHHhccCCh-HHHHHHHHHHHHHHHHh
Q 007918 253 WRVRYMVANQLYELCEA--VGPEPTRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCRI 308 (585)
Q Consensus 253 ~~vR~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~ll~d~~-~~vr~~a~~~l~~l~~~ 308 (585)
.++....+-|+-.+... +......-.+++.+.+.+++.. ..|-+-++..+..++..
T Consensus 214 ~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 214 FQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred hhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56666566665544311 0001111245555555555433 33444444444444443
No 229
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.71 E-value=6.9 Score=43.41 Aligned_cols=217 Identities=16% Similarity=0.184 Sum_probs=129.2
Q ss_pred HhhcCCCchHHHHHHHHhHHHHHhhhccc--chHHHHHHHHHHhccC-----hhHHHHHHHHHHHHhhccCc---hhhhh
Q 007918 169 TQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQD-----DSVRLLAVEGCAALGKLLEP---QDCVA 238 (585)
Q Consensus 169 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d-----~~vr~~a~~~l~~l~~~~~~---~~~~~ 238 (585)
...+..+-.+||.....++..+.+..|.- ..|+.++..+...... ..+-+.+..++.-+...+-+ .....
T Consensus 848 v~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~ 927 (1610)
T KOG1848|consen 848 VSDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL 927 (1610)
T ss_pred HHHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH
Confidence 34556667789999999999998887652 1267777777655433 12333444555554443221 22334
Q ss_pred hhHHHHHHhcc-CCChHHHHHHHHHHHHHHHHhCC-------cc------------------ccc----chHHHHHHhcc
Q 007918 239 HILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP-------EP------------------TRM----DLVPAYVRLLR 288 (585)
Q Consensus 239 ~~~~~l~~~~~-d~~~~vR~~~~~~l~~l~~~~~~-------~~------------------~~~----~l~~~l~~ll~ 288 (585)
.++..+..++. ..+-.+-..++..|-.+...+.. +. .++ .++..+.+++.
T Consensus 928 ~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ 1007 (1610)
T KOG1848|consen 928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCE 1007 (1610)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhc
Confidence 45555544433 33444555666555555544322 00 011 25667778889
Q ss_pred CChHHHHHHHHHHHHHHHHhh----CHHHHHHhhHHHHHHhccC------CcH---HH----HHHHHHHHHhhchhhCHH
Q 007918 289 DNEAEVRIAAAGKVTKFCRIL----NPELAIQHILPCVKELSSD------SSQ---HV----RSALASVIMGMAPLLGKD 351 (585)
Q Consensus 289 d~~~~vr~~a~~~l~~l~~~~----~~~~~~~~i~~~l~~~~~d------~~~---~v----r~~a~~~l~~l~~~~~~~ 351 (585)
|+-++||..|++.+-++.... |+..+..-++.++..++.. ++| .. -+..+-.++.+++.+...
T Consensus 1008 dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~ 1087 (1610)
T KOG1848|consen 1008 DSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSEN 1087 (1610)
T ss_pred cchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHH
Confidence 999999999999999887644 3433333333333333330 111 11 345666777777766532
Q ss_pred H-----------HHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhh
Q 007918 352 A-----------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 385 (585)
Q Consensus 352 ~-----------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 385 (585)
. ..+.++.++..+..+.++++..+++.++..+..
T Consensus 1088 fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1088 FKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence 1 245677778888889999999999999888764
No 230
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=93.69 E-value=6.9 Score=37.56 Aligned_cols=182 Identities=10% Similarity=0.074 Sum_probs=106.4
Q ss_pred hhHHHHHHhccCCcHHHHHHHHHHHHhhchhhC------HHHHHHhHHHHHHH-hhcCCChHHHHHHHHHhHHhhhhhch
Q 007918 317 HILPCVKELSSDSSQHVRSALASVIMGMAPLLG------KDATIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGI 389 (585)
Q Consensus 317 ~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~------~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~ 389 (585)
+++..+...+.+.+........-++++++..-. ...+.+.++..+.+ .-.|.+..+..+++++|..+.--...
T Consensus 315 ~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n 394 (604)
T KOG4500|consen 315 QFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN 394 (604)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc
Confidence 356667777788888888999999999976432 22344455554443 34466677788899999987643322
Q ss_pred h-H-HhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHh-------hChhhHHHHHHHHHHHHccCCchH-HHHHHHHHHH
Q 007918 390 D-L-LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ-------LGVGFFDDKLGALCMQWLQDKVYS-IRDAAANNLK 459 (585)
Q Consensus 390 ~-~-~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~-------~~~~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~ 459 (585)
. . ....+...+...++...+.+....+..+..+... ++. .+.++.-+..+...++.. |-....+.+.
T Consensus 395 ka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~k---n~~l~ekLv~Wsks~D~aGv~gESnRll~ 471 (604)
T KOG4500|consen 395 KAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAK---NPELFEKLVDWSKSPDFAGVAGESNRLLL 471 (604)
T ss_pred hhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhc---CHHHHHHHHHhhhCCccchhhhhhhHHHH
Confidence 1 1 1123344555556666666665555555444322 111 234566677777777765 7666777777
Q ss_pred HHHHHhCH-HH----HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhh
Q 007918 460 RLAEEFGP-EW----AMQHITPQVLEMINNPHYLYRMTILRAISLLA 501 (585)
Q Consensus 460 ~l~~~~~~-~~----~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~ 501 (585)
.+.+.-.. +. -....+..++.+++..+......|+-++..+.
T Consensus 472 ~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~ 518 (604)
T KOG4500|consen 472 GLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTE 518 (604)
T ss_pred HHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHH
Confidence 77664211 10 12334566666766666555565665555443
No 231
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=93.64 E-value=3 Score=35.02 Aligned_cols=111 Identities=17% Similarity=0.165 Sum_probs=76.2
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHH---HHHHHHHHHccC-CchHHHHHHHHHHHHHHHHhCHH-
Q 007918 394 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPE- 468 (585)
Q Consensus 394 ~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~- 468 (585)
+.+...+.+++.++++..|-.++..+....+..|.+.+.. ..+..+...++. ....++..++.++..+....+..
T Consensus 24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4566777788888888889889888888888876666533 345555565554 45678899999999998765431
Q ss_pred -H-------HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcCh
Q 007918 469 -W-------AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS 506 (585)
Q Consensus 469 -~-------~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~ 506 (585)
. ....+++.+++++.+ ......++.++..+...++.
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 1 123455555555554 45667888888888775554
No 232
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.64 E-value=10 Score=42.86 Aligned_cols=206 Identities=18% Similarity=0.137 Sum_probs=133.3
Q ss_pred HHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhh---hHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChh--hHHH
Q 007918 359 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ---SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDD 433 (585)
Q Consensus 359 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~---~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~ 433 (585)
..+.+.+.-.++..+..|...++.+......+.... .+...+.++..|.+.++|......+..+...++.. .+.+
T Consensus 44 ~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK 123 (1312)
T KOG0803|consen 44 DIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLK 123 (1312)
T ss_pred HHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344555556678889999999998887665443322 23344456778999999999999999988877643 3456
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHH----HHHhhhHHHHHhhh--------cC-----------cchHHH
Q 007918 434 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMI--------NN-----------PHYLYR 490 (585)
Q Consensus 434 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~~l--------~~-----------~~~~~R 490 (585)
.++|...-...|....|-.+|...+......-... .+...+.+.+.+.+ .| ...++-
T Consensus 124 ~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi 203 (1312)
T KOG0803|consen 124 SLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVI 203 (1312)
T ss_pred hhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHH
Confidence 67777777778888888888887776654311111 12344444444431 12 123455
Q ss_pred HHHHHHHHHhhhhcChHHHHh---------cHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH---HHHhhHHHHHHH
Q 007918 491 MTILRAISLLAPVMGSEITCS---------RLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVE 558 (585)
Q Consensus 491 ~~a~~~l~~l~~~~~~~~~~~---------~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~~~~~l~~ 558 (585)
..++.++..+....|...-.. .--..+.++++++.|.+|.+....+..+......- ....++.+.+..
T Consensus 204 ~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~ 283 (1312)
T KOG0803|consen 204 SSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLG 283 (1312)
T ss_pred HHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHc
Confidence 566667766665555432111 11235677889999999999999998887665443 445667777777
Q ss_pred hcCCCC
Q 007918 559 LTEDPD 564 (585)
Q Consensus 559 l~~D~~ 564 (585)
...+.+
T Consensus 284 ~~~~~d 289 (1312)
T KOG0803|consen 284 SIDSLD 289 (1312)
T ss_pred cccccc
Confidence 766666
No 233
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=93.62 E-value=1.7 Score=35.66 Aligned_cols=47 Identities=11% Similarity=0.071 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHhhhhcChHHHHh-cHHHHHHhhcCCCCchHHHHHHHH
Q 007918 487 YLYRMTILRAISLLAPVMGSEITCS-RLLPVVINASKDRVPNIKFNVAKV 535 (585)
Q Consensus 487 ~~~R~~a~~~l~~l~~~~~~~~~~~-~i~~~l~~~l~d~~~~vR~~~~~~ 535 (585)
......+++++..+....+.+...+ .+++.+.+.+.++.- |..|+++
T Consensus 100 ~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~c 147 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAEC 147 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHh
Confidence 4455555555555555444443322 355555555544443 4444443
No 234
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=93.56 E-value=2.4 Score=34.55 Aligned_cols=96 Identities=17% Similarity=0.204 Sum_probs=64.8
Q ss_pred hcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHH----HhhhHHHHH
Q 007918 404 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVL 479 (585)
Q Consensus 404 ~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~ll~~l~ 479 (585)
+.+++|..-...++.+..= ..| ....+..+.+-+.++++.|...|+..|..++++.|..+. ...++..+.
T Consensus 13 l~~~dw~~il~icD~I~~~--~~~----~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~ 86 (144)
T cd03568 13 LTSENWGLILDVCDKVKSD--ENG----AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELK 86 (144)
T ss_pred CCCcCHHHHHHHHHHHhcC--Ccc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHH
Confidence 3456787666666555421 112 234566777777888888888888888888888887643 355666677
Q ss_pred hhhcC-cchHHHHHHHHHHHHhhhhcC
Q 007918 480 EMINN-PHYLYRMTILRAISLLAPVMG 505 (585)
Q Consensus 480 ~~l~~-~~~~~R~~a~~~l~~l~~~~~ 505 (585)
.++.+ .+..|+...+..+..+...+.
T Consensus 87 kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 87 KLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 77666 566777777777777776554
No 235
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.49 E-value=9.9 Score=38.73 Aligned_cols=250 Identities=16% Similarity=0.144 Sum_probs=123.2
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccChhHHHHHHHHHHHHhhccCchhhhhh
Q 007918 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDSVRLLAVEGCAALGKLLEPQDCVAH 239 (585)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~vr~~a~~~l~~l~~~~~~~~~~~~ 239 (585)
..+-.+-++...+++++..+|.++...|+.....-..+++...+.|++..--...+|...+.-.++.+.-....++....
T Consensus 449 e~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ 528 (878)
T KOG2005|consen 449 ECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEVLELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSS 528 (878)
T ss_pred ccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHHHHHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHH
Confidence 45566777888888888899999988888766544344444344444331111134666666666655433223333344
Q ss_pred hHHHHHHhcc--CCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHh
Q 007918 240 ILPVIVNFSQ--DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH 317 (585)
Q Consensus 240 ~~~~l~~~~~--d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 317 (585)
++..+.+-.. -.+...|..++ .|+.+ .+|+.. ........++.-+..+|+.+ ..+-..|...|.-.+. .
T Consensus 529 ilqtlmekse~El~d~~~RFL~L-GL~ll--flgkqe----~~d~~~e~~~~i~~~~~~~~-~~lv~~caYaGTGnvl-~ 599 (878)
T KOG2005|consen 529 ILQTLMEKSETELEDQWFRFLAL-GLALL--FLGKQE----SVDAVVETIKAIEGPIRKHE-SILVKSCAYAGTGNVL-K 599 (878)
T ss_pred HHHHHHHhhhhhhhchHHHHHHH-HHHHH--Hhcccc----hHHHHHHHHHHhhhHHHHHH-HHHHHHhhccccCceE-E
Confidence 4443333221 22333454332 22222 223322 12222222222122233322 3333334333332110 0
Q ss_pred hH-HHHHHhccCCcHHH---HHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHh
Q 007918 318 IL-PCVKELSSDSSQHV---RSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS 393 (585)
Q Consensus 318 i~-~~l~~~~~d~~~~v---r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 393 (585)
+- ..+..++.+....- +.-++-.+.-+ .+|.+.-.+..+..+..++.-.++.+|.+.--+++-++..-+ +
T Consensus 600 Iq~q~ll~~cgE~~~~~e~~~~~avLgiAli--AMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSNP--q-- 673 (878)
T KOG2005|consen 600 IQSQLLLSFCGEHDADLESEQELAVLGIALI--AMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNP--Q-- 673 (878)
T ss_pred echhhhhhhcCCCccchhhhccchhhhhhhh--hhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCC--c--
Confidence 10 12223333322111 11222222211 234344345566677777777788999888888877664322 2
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhHHHHH
Q 007918 394 QSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 424 (585)
Q Consensus 394 ~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~ 424 (585)
-.++..+.++..|.+..+-..++-+++-+..
T Consensus 674 ~~vlDtLsk~shd~D~eva~naIfamGLiGA 704 (878)
T KOG2005|consen 674 VNVLDTLSKFSHDGDLEVAMNAIFAMGLIGA 704 (878)
T ss_pred chHHHHHHHhccCcchHHHHHHHHHhccccC
Confidence 2577888888888888888888877776543
No 236
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.49 E-value=12 Score=45.91 Aligned_cols=283 Identities=14% Similarity=0.125 Sum_probs=159.1
Q ss_pred hhhHHHHHHhccCCChHHHHHHHHHHHHHHHHh----CCcc------cccchHHHHHHhccCChHHHHHHHHHHHHHHHH
Q 007918 238 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAV----GPEP------TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR 307 (585)
Q Consensus 238 ~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~----~~~~------~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~ 307 (585)
..+++.+...+...+..++..+..++..+-... |+.. .-..+++.+.+++.|+.|.-|...+.++..+..
T Consensus 983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 346778888888889999999999998876543 3211 123577888889999999999988888887777
Q ss_pred hhCHHHHH---HhhHHHHHHhccCCcH--------HHHHHHHHHHHhhchhhCH----HHHHHhHHHHHHHhhcCCChHH
Q 007918 308 ILNPELAI---QHILPCVKELSSDSSQ--------HVRSALASVIMGMAPLLGK----DATIEQLLPIFLSLLKDEFPDV 372 (585)
Q Consensus 308 ~~~~~~~~---~~i~~~l~~~~~d~~~--------~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~v 372 (585)
..+..... ..++..+.-.+.|... .++......+..+....+. ......++..+...+.+++..|
T Consensus 1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 66533221 2223333322332221 2222222222222211111 1223445555666777888899
Q ss_pred HHHHHHHhHHhhhhhchhHHhhhHHHHHHHHh---------cCCChHHHHHHHHHhHHHHHhhChhhHH--HH---HHHH
Q 007918 373 RLNIISKLDQVNQVIGIDLLSQSLLPAIVELA---------EDRHWRVRLAIIEYIPLLASQLGVGFFD--DK---LGAL 438 (585)
Q Consensus 373 r~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~---------~~~~~~~r~~~~~~l~~l~~~~~~~~~~--~~---l~~~ 438 (585)
|+.+...|..+.+..|.+.. .++..+.+++ .........+.++.+..... .++..+. .. +.-.
T Consensus 1143 R~~~~~~L~~i~~~s~~~v~--~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~-l~p~~f~~~~~l~~l~~~ 1219 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGKSVV--KLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLS-LGPCLFDFTEELYRLKRF 1219 (3550)
T ss_pred HHHHHHHHHHHHHHcCCcHH--HHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHH-cCCcccCchHHHHHHHHH
Confidence 99999999999988765432 3333344433 22233344444444433322 2322211 10 1111
Q ss_pred HHHHc--------------cCC----chHHHHHHHHHHHHHHHHhCHH-----HHHhhhHHHHHhhhcCcchHHHHHHHH
Q 007918 439 CMQWL--------------QDK----VYSIRDAAANNLKRLAEEFGPE-----WAMQHITPQVLEMINNPHYLYRMTILR 495 (585)
Q Consensus 439 l~~~l--------------~d~----~~~vr~~a~~~l~~l~~~~~~~-----~~~~~ll~~l~~~l~~~~~~~R~~a~~ 495 (585)
+..+. .-+ ....|.+..++++..+...... ...++++..+.+.+..+...+-+++..
T Consensus 1220 ~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~ 1299 (3550)
T KOG0889|consen 1220 LIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALE 1299 (3550)
T ss_pred HHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 11111 111 2234777777777766543321 134677777777777777888888888
Q ss_pred HHHHhhh---hcChHHHHhcHHHHHHhhcCC
Q 007918 496 AISLLAP---VMGSEITCSRLLPVVINASKD 523 (585)
Q Consensus 496 ~l~~l~~---~~~~~~~~~~i~~~l~~~l~d 523 (585)
++..... .++.+......-|.+..+-+.
T Consensus 1300 ~l~~v~~~~~~~~ke~lq~~lrplL~~l~d~ 1330 (3550)
T KOG0889|consen 1300 GLRKVLAQDVKLPKELLQSHLRPLLMNLSDH 1330 (3550)
T ss_pred HHHhhhhccccccHHHHHhhHHHHHHhhhHh
Confidence 8877654 355665555555666655443
No 237
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.46 E-value=7.1 Score=37.00 Aligned_cols=150 Identities=11% Similarity=0.122 Sum_probs=73.3
Q ss_pred HHHHHhhh-cccchHHHHHHHHHHhccChhHHHHHHHHHHHHhhccCchhhhhhhHHHHHHhccCCChHHHHHHHHHHHH
Q 007918 187 LGKFAATV-EPAHLKTDIMSIFEDLTQDDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 265 (585)
Q Consensus 187 l~~l~~~~-~~~~~~~~l~~~l~~l~~d~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~ 265 (585)
+..+.... +.++..++++.++..++.++..|... +..+...-+ ...+.|++ ++++.+++.+...++..+..
T Consensus 60 ~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~---~~~~~~~~~----~~~~~~fl-~ll~~~D~~i~~~a~~iLt~ 131 (312)
T PF03224_consen 60 FLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVEL---FLELAKQDD----SDPYSPFL-KLLDRNDSFIQLKAAFILTS 131 (312)
T ss_dssp --HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHH---HHHHHH-TT----H--HHHHH-HH-S-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHH---HHHhccccc----chhHHHHH-HHhcCCCHHHHHHHHHHHHH
Confidence 33444444 55666777777777776663222211 122221111 11334444 47778899999999999998
Q ss_pred HHHHhCCcccc--cchHHHHHHhccC----ChHHHHHHHHHHHHHHHHhhCH--HHHHHhhHHHHHHhc-----c--CCc
Q 007918 266 LCEAVGPEPTR--MDLVPAYVRLLRD----NEAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELS-----S--DSS 330 (585)
Q Consensus 266 l~~~~~~~~~~--~~l~~~l~~ll~d----~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~-----~--d~~ 330 (585)
+....+..... ...++.+++.+.+ ++.++...++.++..+.+.-.. ..+....++.+...+ . ..+
T Consensus 132 Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~ 211 (312)
T PF03224_consen 132 LLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSG 211 (312)
T ss_dssp HHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------H
T ss_pred HHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCc
Confidence 88765543322 2566667666554 4456778888888888753211 122234445555555 1 223
Q ss_pred HHHHHHHHHHHHhh
Q 007918 331 QHVRSALASVIMGM 344 (585)
Q Consensus 331 ~~vr~~a~~~l~~l 344 (585)
..+...++-++..+
T Consensus 212 ~Ql~Y~~ll~lWlL 225 (312)
T PF03224_consen 212 IQLQYQALLCLWLL 225 (312)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 44455555444433
No 238
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=93.39 E-value=1.1 Score=36.47 Aligned_cols=97 Identities=12% Similarity=0.162 Sum_probs=72.2
Q ss_pred ccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHH----HhcHHHHHH
Q 007918 443 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVI 518 (585)
Q Consensus 443 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~----~~~i~~~l~ 518 (585)
+..++|.+-...+..+..= ..| ....+..+..-+++++..+...|+..+..++++||..+. ...++..+.
T Consensus 13 l~~~dw~~il~icD~I~~~--~~~----~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~ 86 (144)
T cd03568 13 LTSENWGLILDVCDKVKSD--ENG----AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELK 86 (144)
T ss_pred CCCcCHHHHHHHHHHHhcC--Ccc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHH
Confidence 3456676655555544421 112 234666777778889999999999999999999998653 467888888
Q ss_pred hhcCC-CCchHHHHHHHHHHHHHhhhch
Q 007918 519 NASKD-RVPNIKFNVAKVLQSLIPIVDQ 545 (585)
Q Consensus 519 ~~l~d-~~~~vR~~~~~~l~~l~~~~~~ 545 (585)
+++++ .++.||..++..+......+..
T Consensus 87 kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 87 KLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 88888 6889999999999998877754
No 239
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.36 E-value=2.3 Score=38.32 Aligned_cols=132 Identities=18% Similarity=0.271 Sum_probs=73.8
Q ss_pred hhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcC------CChHHHHHHHHHhHHHHHhhC--hhhHHHHH
Q 007918 364 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED------RHWRVRLAIIEYIPLLASQLG--VGFFDDKL 435 (585)
Q Consensus 364 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~------~~~~~r~~~~~~l~~l~~~~~--~~~~~~~l 435 (585)
++...+.+.|.+|+++|..=. |. +.++|.+..++.+ .+-..-...+.....+.+.-. .+.+..++
T Consensus 206 l~dEs~~~~r~aAl~sLr~ds---Gl----hQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hql 278 (450)
T COG5095 206 LLDESDEQTRDAALESLRNDS---GL----HQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQL 278 (450)
T ss_pred HHHHHHHHHHHHHHHHhccCc---cH----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHH
Confidence 344455677777777766532 22 3455555554433 122222223333333332211 23344566
Q ss_pred HHHHHHHc------cC----CchHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhcCc--chHHHHHHHHHHHHhh
Q 007918 436 GALCMQWL------QD----KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNP--HYLYRMTILRAISLLA 501 (585)
Q Consensus 436 ~~~l~~~l------~d----~~~~vr~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~~~--~~~~R~~a~~~l~~l~ 501 (585)
+|.++.++ ++ +...+|..|+..++..+..++..+ ..+.+...+.+.+-|. .+...-.|+.++.-+.
T Consensus 279 mPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~ 358 (450)
T COG5095 279 MPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILS 358 (450)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhc
Confidence 77766654 12 234699999999999999888754 2355666666555443 3566777777776665
Q ss_pred h
Q 007918 502 P 502 (585)
Q Consensus 502 ~ 502 (585)
+
T Consensus 359 k 359 (450)
T COG5095 359 K 359 (450)
T ss_pred h
Confidence 4
No 240
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.15 E-value=2.2 Score=40.49 Aligned_cols=104 Identities=22% Similarity=0.232 Sum_probs=53.7
Q ss_pred HccCCchHHHHHHHHHHHHHHHHhCHH--HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChH---HHHhcHHHH
Q 007918 442 WLQDKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPV 516 (585)
Q Consensus 442 ~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~---~~~~~i~~~ 516 (585)
.+...+..||..|+..+..+....... .....+++.+..+..|.+..+|....+.+..++....++ .+...+++.
T Consensus 66 qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~y 145 (393)
T KOG2149|consen 66 QLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMPY 145 (393)
T ss_pred hhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHHH
Confidence 345555556666655555555441111 012334555555555666666666666555544333222 134455555
Q ss_pred HHhhcCCCCchHHHHHHHHHHHHHhhhch
Q 007918 517 VINASKDRVPNIKFNVAKVLQSLIPIVDQ 545 (585)
Q Consensus 517 l~~~l~d~~~~vR~~~~~~l~~l~~~~~~ 545 (585)
+...+....+.+|.-++..+..+...+++
T Consensus 146 i~~AMThit~~i~~dslkfL~~Ll~~~~p 174 (393)
T KOG2149|consen 146 ISSAMTHITPEIQEDSLKFLSLLLERYPD 174 (393)
T ss_pred HHHHHhhccHHHHHhhHHHHHHHHHHcCh
Confidence 55555555666666666666666555544
No 241
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=93.12 E-value=12 Score=38.71 Aligned_cols=143 Identities=8% Similarity=0.055 Sum_probs=94.5
Q ss_pred hhHHHHHHHHhc-----C---CChHHHHHHHHHhHHHHHhhChh-----hHHHHHHHHHHHHccCCchHHHHHHHHHHHH
Q 007918 394 QSLLPAIVELAE-----D---RHWRVRLAIIEYIPLLASQLGVG-----FFDDKLGALCMQWLQDKVYSIRDAAANNLKR 460 (585)
Q Consensus 394 ~~ll~~l~~~~~-----~---~~~~~r~~~~~~l~~l~~~~~~~-----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 460 (585)
+.+++.+...++ + .+.+...+++..+..+...+... .+...+++.+...+.++.--.|..|+..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 456666666552 1 35667778888887776644321 2233466777778899999999999999999
Q ss_pred HHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcC--hH--HHHhcHHHHHHhhcCCCCchHHHHHHHHH
Q 007918 461 LAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG--SE--ITCSRLLPVVINASKDRVPNIKFNVAKVL 536 (585)
Q Consensus 461 l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~--~~--~~~~~i~~~l~~~l~d~~~~vR~~~~~~l 536 (585)
+-..+......-.+.....+++++....++..|+.++.-++..-. .. ...+..+.-++.+.++-+-++-..+++.+
T Consensus 487 ~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~f 566 (970)
T COG5656 487 IEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESF 566 (970)
T ss_pred HHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHHH
Confidence 865555444445566677778888888999999999988775322 11 13455566677777765555555554444
No 242
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=93.12 E-value=9.1 Score=37.27 Aligned_cols=215 Identities=11% Similarity=0.069 Sum_probs=112.4
Q ss_pred cCCCChHHHHHHHHHHHhhcCCCch--HHHHHHHHhHHHHHhhhccc----chHHHHHHHHHHhccC---hhHHHHHHHH
Q 007918 153 YPSAPDILKTELRSIYTQLCQDDMP--MVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQD---DSVRLLAVEG 223 (585)
Q Consensus 153 ~~~~~~~~~~~l~~~l~~l~~d~~~--~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~d---~~vr~~a~~~ 223 (585)
...++.+....++......+.+++. .+-.....++.. +.+++. .....++..+..+.+- ..+-...+.+
T Consensus 80 ~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i 157 (372)
T PF12231_consen 80 VSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNI 157 (372)
T ss_pred HhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHH
Confidence 4455666555566666666655432 222223222222 122222 2333344444443321 3455566667
Q ss_pred HHHHhhccCch--hhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHH
Q 007918 224 CAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGK 301 (585)
Q Consensus 224 l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~ 301 (585)
+..+....+.. .....-+|.+....-+....+|..+......+...++.+......+....+...+++ .+....++.
T Consensus 158 ~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~ 236 (372)
T PF12231_consen 158 YKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG-KLIQLYCER 236 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc-cHHHHHHHH
Confidence 77777666652 123334455555444566677887777777777776654322222222222111222 445555555
Q ss_pred HHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhH
Q 007918 302 VTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD 381 (585)
Q Consensus 302 l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 381 (585)
|..+...-+......+++..+..++.++- +......+..+.+...+++++++.+|..|..+-.
T Consensus 237 L~~mi~~~~~~~~a~~iW~~~i~LL~~~~-----------------~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~ 299 (372)
T PF12231_consen 237 LKEMIKSKDEYKLAMQIWSVVILLLGSSR-----------------LDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWR 299 (372)
T ss_pred HHHHHhCcCCcchHHHHHHHHHHHhCCch-----------------hhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 55555442333334556666655554321 1122345667777788889999999999999888
Q ss_pred Hhhhhh
Q 007918 382 QVNQVI 387 (585)
Q Consensus 382 ~l~~~~ 387 (585)
.+....
T Consensus 300 ~liy~~ 305 (372)
T PF12231_consen 300 RLIYAS 305 (372)
T ss_pred HHHHHh
Confidence 877644
No 243
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.08 E-value=4.6 Score=36.17 Aligned_cols=71 Identities=11% Similarity=0.153 Sum_probs=41.0
Q ss_pred HHhhHHHHHHHhhcCc-CccchhhHHhhhHhhcCCCChHH-----HHHHHHHHHhhcCCCchHHHHHHHHhHHHHHh
Q 007918 122 LVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDIL-----KTELRSIYTQLCQDDMPMVRRSAASNLGKFAA 192 (585)
Q Consensus 122 ~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~~-----~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~ 192 (585)
+.-++.|++....+.. .+..|.+....++.+...-+.+. ..+++|+.....+..+...|..|.-.+.++..
T Consensus 92 iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~ 168 (262)
T PF04078_consen 92 IPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILL 168 (262)
T ss_dssp GGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred chhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHc
Confidence 3456888887666655 47778888888888876554432 24566666666666555555555555555443
No 244
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.88 E-value=11 Score=37.58 Aligned_cols=209 Identities=13% Similarity=0.144 Sum_probs=117.3
Q ss_pred CChHHHHHHHHHHHHHHHHhhC------HHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhC---HHHH------
Q 007918 289 DNEAEVRIAAAGKVTKFCRILN------PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG---KDAT------ 353 (585)
Q Consensus 289 d~~~~vr~~a~~~l~~l~~~~~------~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~---~~~~------ 353 (585)
..+.+-+.+.++.+..+++.+- ++.+ -.++..+.-....++++|-.........+....- ....
T Consensus 258 ~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~-l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frp 336 (559)
T KOG2081|consen 258 GEDLDKNEAICRIFTELGEAFVVLISTNPEEF-LRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRP 336 (559)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcc-hhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHH
Confidence 3445666777777777766442 2211 1223333444566677666665555555544331 1111
Q ss_pred -HHhHHHHHHHhhc---------C---CChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhH
Q 007918 354 -IEQLLPIFLSLLK---------D---EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 420 (585)
Q Consensus 354 -~~~l~~~l~~~l~---------d---~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~ 420 (585)
...++..+....+ + +..+-|......+..+.-.+|...-.+.+.-.+.. ++..|+.-++++..+.
T Consensus 337 y~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~ 414 (559)
T KOG2081|consen 337 YFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILR 414 (559)
T ss_pred HHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHH
Confidence 1222222222111 1 12456888888888888777765322222222222 4678999999999999
Q ss_pred HHHHhhChhhHHHHHHHHHHHHcc--CCchHHHHHHHHHHHHHHHHhCHHH-HHhhhHHHHHhhhcCcchHHHHHHHHHH
Q 007918 421 LLASQLGVGFFDDKLGALCMQWLQ--DKVYSIRDAAANNLKRLAEEFGPEW-AMQHITPQVLEMINNPHYLYRMTILRAI 497 (585)
Q Consensus 421 ~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~ll~~l~~~l~~~~~~~R~~a~~~l 497 (585)
.+++.+.+. ...++|-+++.+. +....+|..++..+|.+.+...... ..+.++..+...+.... .-.++..++
T Consensus 415 ~~~~~~~~~--e~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~ 490 (559)
T KOG2081|consen 415 AVAKNVSPE--ENTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAF 490 (559)
T ss_pred HHhccCCcc--ccchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHH
Confidence 999988654 2345666555543 3445599999999999988665432 33445555555555554 344555555
Q ss_pred HHhhhhc
Q 007918 498 SLLAPVM 504 (585)
Q Consensus 498 ~~l~~~~ 504 (585)
..++..+
T Consensus 491 ~~i~~~c 497 (559)
T KOG2081|consen 491 HRICSAC 497 (559)
T ss_pred HHHHHHH
Confidence 5555444
No 245
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.86 E-value=14 Score=38.64 Aligned_cols=172 Identities=19% Similarity=0.201 Sum_probs=99.9
Q ss_pred CChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCC-hHHHHHHHHHHHHHHHHhhC--HHHH---HHhhHHHHHH
Q 007918 251 KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN-EAEVRIAAAGKVTKFCRILN--PELA---IQHILPCVKE 324 (585)
Q Consensus 251 ~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~-~~~vr~~a~~~l~~l~~~~~--~~~~---~~~i~~~l~~ 324 (585)
...-+|+..+..+|.-...--+......+...+.+++.|. |-.||-+++.++....+... ++.+ .+.+...+..
T Consensus 499 ~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfk 578 (978)
T KOG1993|consen 499 NSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFK 578 (978)
T ss_pred chhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHH
Confidence 3455788888888887653222333445677788899998 57799999999998887543 3322 2333333333
Q ss_pred hccC-CcHHHHHHHHHHHHhhchhhCHH-----HHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchh--HHhhhH
Q 007918 325 LSSD-SSQHVRSALASVIMGMAPLLGKD-----ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSL 396 (585)
Q Consensus 325 ~~~d-~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l 396 (585)
++.. ..-+.|......++.+....+.. ...-.++|.+...-. +++-.|.+.+..+..++..+|.+ ...+.+
T Consensus 579 ll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~alg~qS~~~~~fL 657 (978)
T KOG1993|consen 579 LLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNALGAQSFEFYPFL 657 (978)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHHhccCCccchHHH
Confidence 3321 22345556666666655444321 122233444444433 45788999999999999999854 334555
Q ss_pred HHHHHHHhcCCC-hH---HHHHHHHHhHHHHH
Q 007918 397 LPAIVELAEDRH-WR---VRLAIIEYIPLLAS 424 (585)
Q Consensus 397 l~~l~~~~~~~~-~~---~r~~~~~~l~~l~~ 424 (585)
+|.+ ++..|++ +. .-..+++.+.....
T Consensus 658 ~pVI-el~~D~~sP~hv~L~EDgmeLW~~~L~ 688 (978)
T KOG1993|consen 658 YPVI-ELSTDPSSPEHVYLLEDGMELWLTTLM 688 (978)
T ss_pred HHHH-HHhcCCCCCceeehhhhHHHHHHHHHh
Confidence 6655 3444432 22 33345555544443
No 246
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=92.82 E-value=2.3 Score=34.55 Aligned_cols=71 Identities=6% Similarity=0.076 Sum_probs=37.9
Q ss_pred HHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHH----HhcHHHHHHhhcC-CCCchHHHHHHHHHHHHHhhhch
Q 007918 475 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQ 545 (585)
Q Consensus 475 l~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~----~~~i~~~l~~~l~-d~~~~vR~~~~~~l~~l~~~~~~ 545 (585)
+..+.+-+++++..+...|+..+..++++||..+. ...++..+..+++ ..++.||..++..+......+++
T Consensus 43 ~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 43 MRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 33444444455555555555555555555554332 2344455555444 34566777777776666655543
No 247
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=92.79 E-value=3.1 Score=33.57 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=34.9
Q ss_pred HHHhhhcCcchHHHHHHHHHHHHhhhhcChHHH----HhcHHHHHHhhcCC------CCchHHHHHHHHHHHHHhhhc
Q 007918 477 QVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD------RVPNIKFNVAKVLQSLIPIVD 544 (585)
Q Consensus 477 ~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~----~~~i~~~l~~~l~d------~~~~vR~~~~~~l~~l~~~~~ 544 (585)
.+...+++++..+...|+..+..++++||..+. ...++..+.+++++ .++.||..++..+......++
T Consensus 42 ai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 42 LLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 333444455555555555555555555554331 23444445555432 355666666666666655443
No 248
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.64 E-value=1.2 Score=42.09 Aligned_cols=109 Identities=17% Similarity=0.229 Sum_probs=76.2
Q ss_pred HHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhh---hhccccccc-ccCCchHHHHHHHHHHhccccccCCc---ch
Q 007918 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTR---KELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGV---EH 83 (585)
Q Consensus 11 i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~---~~l~~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~---~~ 83 (585)
+.+|+..+++.+.++|..|+..+..+... -+.... ..+++.+.. ..|++..||...-..+..++...+.. -+
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~ 138 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM 138 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence 78889999999999999999999887766 233322 244455555 67778888877777666554433211 13
Q ss_pred HHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChh
Q 007918 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120 (585)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~ 120 (585)
...+++.+......-.+.||..+..-+..+...+++.
T Consensus 139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~ 175 (393)
T KOG2149|consen 139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDT 175 (393)
T ss_pred HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChH
Confidence 4556666666667778888888888888888888764
No 249
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=92.64 E-value=11 Score=36.81 Aligned_cols=265 Identities=15% Similarity=0.125 Sum_probs=121.3
Q ss_pred hHHHHHHHHHHHHHHHH------hhCHHHHHHhhHHHHHHhccCCc-H-HHHHHHHHHHHh--hchhhCHHHHHHhHHHH
Q 007918 291 EAEVRIAAAGKVTKFCR------ILNPELAIQHILPCVKELSSDSS-Q-HVRSALASVIMG--MAPLLGKDATIEQLLPI 360 (585)
Q Consensus 291 ~~~vr~~a~~~l~~l~~------~~~~~~~~~~i~~~l~~~~~d~~-~-~vr~~a~~~l~~--l~~~~~~~~~~~~l~~~ 360 (585)
+.++-..|++.++.+.. .++.+.. ..++......+.+++ + .+......++.. +...+-.....+.++..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~-~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFA-SFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence 56677788888886653 3333321 223333333343332 2 233333333322 21111111122333333
Q ss_pred HHHhhc-CCChHHHHHHHHHhHHhhhhhchhH--HhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHH
Q 007918 361 FLSLLK-DEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 437 (585)
Q Consensus 361 l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~ 437 (585)
+...-+ =.+..+-...+..+..+....+..- ..+..+|.+...+-+....+|..++.....+...+|++........
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~ 217 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVL 217 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 333222 2234555555666666655444321 1134556666555566666777776666666555554322221111
Q ss_pred HHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcC-cchHHHHHHHHHHHHhhhh--cChHHHHhcHH
Q 007918 438 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN-PHYLYRMTILRAISLLAPV--MGSEITCSRLL 514 (585)
Q Consensus 438 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~-~~~~~R~~a~~~l~~l~~~--~~~~~~~~~i~ 514 (585)
...+....+. .+. +.+.+.+..++.+ .+...-...-.++..+... +....+.+..+
T Consensus 218 ~~~~~~~~~~-~~~--------------------~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL 276 (372)
T PF12231_consen 218 EDLQRSLENG-KLI--------------------QLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWL 276 (372)
T ss_pred HHhccccccc-cHH--------------------HHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHH
Confidence 1111111111 222 2233334444444 2211111111111111110 22223568888
Q ss_pred HHHHhhcCCCCchHHHHHHHHHHHHHhhhchH-----HHHh-hHHHHHHHhcCCCCc----cHHHHHHHHHHH
Q 007918 515 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-----MVEK-TIRPCLVELTEDPDV----DVRFFATQAIQS 577 (585)
Q Consensus 515 ~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~-----~~~~-~~~~~l~~l~~D~~~----~Vr~~a~~al~~ 577 (585)
.....+++++++.+|..+..+...++.....+ .... -..|....+-..... +++..+...+..
T Consensus 277 ~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ 349 (372)
T PF12231_consen 277 KVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCN 349 (372)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhc
Confidence 88889999999999999999998887644322 1222 234554455444444 555555554443
No 250
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.54 E-value=11 Score=36.92 Aligned_cols=82 Identities=11% Similarity=0.065 Sum_probs=52.5
Q ss_pred HHhhccCc--hhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHH
Q 007918 226 ALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVT 303 (585)
Q Consensus 226 ~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~ 303 (585)
.++.++|. ..+...+..++..-+.--.+..|...+.+|.-+-. .....+..++..|+.++.-.+...|..+...+.
T Consensus 5 qv~~~yp~~~a~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrN--k~~i~~~~LL~lff~l~~~~dk~lRkllythiv 82 (616)
T KOG2229|consen 5 QVCPCYPEVLANFPSELKDLLRTNHTVLPPELREKIVKALILLRN--KNLIVAEDLLELFFPLLRCGDKNLRKLLYTHIV 82 (616)
T ss_pred hcccccHHHHHhhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhc--cCcCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 34444544 34566666666666666778888888888764432 233445678888888877666677777666666
Q ss_pred HHHHhh
Q 007918 304 KFCRIL 309 (585)
Q Consensus 304 ~l~~~~ 309 (585)
...+.+
T Consensus 83 ~~Ikn~ 88 (616)
T KOG2229|consen 83 TTIKNI 88 (616)
T ss_pred HHHHHH
Confidence 655543
No 251
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=92.54 E-value=0.59 Score=34.56 Aligned_cols=70 Identities=20% Similarity=0.347 Sum_probs=48.9
Q ss_pred cCCChHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHHhccCCh--HHHHHHHHHHHHHHHHhhCHHHHHHhhHHHH
Q 007918 249 QDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNE--AEVRIAAAGKVTKFCRILNPELAIQHILPCV 322 (585)
Q Consensus 249 ~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~ll~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l 322 (585)
.+++|.+|..|++.++.++..++... ....+...+.+.+.|++ ......|+.+|..+ |++.+...++|.+
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~l 89 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPNL 89 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccCc
Confidence 36789999999999999999887642 23456667777777654 55778888888877 4444434455443
No 252
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=92.50 E-value=4.8 Score=32.49 Aligned_cols=98 Identities=11% Similarity=0.092 Sum_probs=72.3
Q ss_pred HhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHH----HhhhHHHH
Q 007918 403 LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQV 478 (585)
Q Consensus 403 ~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~ll~~l 478 (585)
.+.+++|..-...++.+.. +..| ....+..+.+.+.++++.|...|+..|..++++.|..+. ...++..+
T Consensus 13 ~l~~~dw~~ileicD~In~--~~~~----~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el 86 (139)
T cd03567 13 SNREEDWEAIQAFCEQINK--EPEG----PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNEL 86 (139)
T ss_pred cCCCCCHHHHHHHHHHHHc--CCcc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHH
Confidence 3456788876666666642 1112 234566777888999999999999999999999888653 36677778
Q ss_pred HhhhcC------cchHHHHHHHHHHHHhhhhcCh
Q 007918 479 LEMINN------PHYLYRMTILRAISLLAPVMGS 506 (585)
Q Consensus 479 ~~~l~~------~~~~~R~~a~~~l~~l~~~~~~ 506 (585)
..++.. ....||...+..+..+...++.
T Consensus 87 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (139)
T cd03567 87 IKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPH 120 (139)
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 777753 4578999999999988876653
No 253
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=92.48 E-value=7.2 Score=34.46 Aligned_cols=132 Identities=14% Similarity=0.073 Sum_probs=76.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccC-CchHHHHHH-HHHHHHHHHHhCHHHHHhhh
Q 007918 397 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD-KVYSIRDAA-ANNLKRLAEEFGPEWAMQHI 474 (585)
Q Consensus 397 l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a-~~~l~~l~~~~~~~~~~~~l 474 (585)
......+..+.....|..++..+....+... ....+.+..++.+ .+|.+.... ...++.+.... +..
T Consensus 53 ~~l~~~L~~~~~~E~~~la~~il~~~~~~~~-----~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------~~~ 121 (213)
T PF08713_consen 53 YELADELWESGYREERYLALLILDKRRKKLT-----EEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------PEA 121 (213)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHHCGGG-------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------GGH
T ss_pred HHHHHHHcCCchHHHHHHHHHHhHHHhhhhh-----HHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------HHH
Confidence 3444556667777777777666654332222 2234455555543 455565555 34444443321 456
Q ss_pred HHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh
Q 007918 475 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 543 (585)
Q Consensus 475 l~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~ 543 (585)
.+.+.....+++.-+|..++.++...... ...+.++..+...+.|+..-||.++..+|..+....
T Consensus 122 ~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~ 186 (213)
T PF08713_consen 122 LELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKD 186 (213)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhC
Confidence 77777777777766666555544333332 234677777777788888888888888888876653
No 254
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.12 E-value=14 Score=36.92 Aligned_cols=386 Identities=13% Similarity=0.125 Sum_probs=189.3
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC-hhHHHHHHHHHHHHhhccCchhhhh
Q 007918 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD-DSVRLLAVEGCAALGKLLEPQDCVA 238 (585)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d-~~vr~~a~~~l~~l~~~~~~~~~~~ 238 (585)
.++.++..+..+...++ .+|.+.+-++..++-.++ ...+.+...+.++.++ +.++ .+-.+.+.+|.+....
T Consensus 60 lrdsl~thl~~l~~~~~-~i~tQL~vavA~Lal~~~--~W~n~I~e~v~~~~~~~~~~~-----~lLeiL~VlPEE~~~~ 131 (559)
T KOG2081|consen 60 LRDSLITHLKELHDHPD-VIRTQLAVAVAALALHMP--EWVNPIFELVRALSNKHPAVP-----ILLEILKVLPEETRDI 131 (559)
T ss_pred HHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHHHHhH--hhcchHHHHHHHhhcCCccHH-----HHHHHHHhCcHhhcch
Confidence 45566666666655555 888888888888887764 2333455555555554 3221 2223333333321110
Q ss_pred hhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCCh---HHHHHHHHHHHHHHHH--hhCHHH
Q 007918 239 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE---AEVRIAAAGKVTKFCR--ILNPEL 313 (585)
Q Consensus 239 ~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~---~~vr~~a~~~l~~l~~--~~~~~~ 313 (585)
... .. ..-|......+ +.. ...++..+..++++++ ..+-..++++++.... .+.++.
T Consensus 132 ~~~-----~~----a~Rr~e~~~~l---~~~------~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~ 193 (559)
T KOG2081|consen 132 RLT-----VG----ANRRHEFIDEL---AAQ------VSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQ 193 (559)
T ss_pred hhh-----hh----hhhHHHHHHHH---HHh------HHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHH
Confidence 000 00 00011111111 111 2234555555554432 3455556666655444 334443
Q ss_pred HHH--hhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCH--H--HH------HHhHHHHHHHh-hcCCChHHHHHHHHHh
Q 007918 314 AIQ--HILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--D--AT------IEQLLPIFLSL-LKDEFPDVRLNIISKL 380 (585)
Q Consensus 314 ~~~--~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~--~~------~~~l~~~l~~~-l~d~~~~vr~~a~~~l 380 (585)
+.. .++......+++ ...-..+..++..+-..... + .+ ...++|...+. ....+.+-+.+...-+
T Consensus 194 v~a~~pLi~l~F~sl~~--~~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIF 271 (559)
T KOG2081|consen 194 VLASFPLITLAFRSLSD--DELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIF 271 (559)
T ss_pred HHhhhHHHHHHHHHccc--chhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHH
Confidence 211 233344444542 22334444444443222210 0 01 11222222222 2233455555555555
Q ss_pred HHhhhhhc------hhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhCh---hhHHHHHHHHHHHHc--------
Q 007918 381 DQVNQVIG------IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWL-------- 443 (585)
Q Consensus 381 ~~l~~~~~------~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-------- 443 (585)
..+++.+- ++.+ -.++..+.-.....+|++-......+..+.+..-. ......+-|+..+++
T Consensus 272 tel~eaf~~~i~~np~~~-l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~q 350 (559)
T KOG2081|consen 272 TELGEAFVVLISTNPEEF-LRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQ 350 (559)
T ss_pred HHHHHHHHHHHhhCCCcc-hhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHcc
Confidence 55554432 1111 12233333444677777766666665555543321 111111223322221
Q ss_pred -----------cCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhc
Q 007918 444 -----------QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSR 512 (585)
Q Consensus 444 -----------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~ 512 (585)
.+.-.+-|......+..+....|.+...+...-.+.+ +++.|..-++++..+..++++..++ .+.
T Consensus 351 lp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~--e~~ 426 (559)
T KOG2081|consen 351 LPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPE--ENT 426 (559)
T ss_pred CCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCcc--ccc
Confidence 1234578889999999988888876332222222222 4667999999999999999987764 255
Q ss_pred HHHHHHhhcCC--CCchHHHHHHHHHHHHHhhhchH-HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007918 513 LLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQS-MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 513 i~~~l~~~l~d--~~~~vR~~~~~~l~~l~~~~~~~-~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~ 580 (585)
++|.+++.+.. ....+|..++..+|.+....... ...+-++..+.....+.. ....++.+...++.
T Consensus 427 i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~ 495 (559)
T KOG2081|consen 427 IMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICS 495 (559)
T ss_pred hHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHH
Confidence 66666655432 23349999999999987665432 233333344444444333 55566666665554
No 255
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=92.09 E-value=4.6 Score=32.84 Aligned_cols=98 Identities=14% Similarity=0.092 Sum_probs=72.9
Q ss_pred hcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHH----HhhhHHHHH
Q 007918 404 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVL 479 (585)
Q Consensus 404 ~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~ll~~l~ 479 (585)
+.+++|..-...++.+..- ..| ....+..+.+-+..+++.|...|+..|..++++.|..+. ...++..+.
T Consensus 17 l~~~dw~~ileicD~In~~--~~~----~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~ 90 (142)
T cd03569 17 LGEPDLASILEICDMIRSK--DVQ----PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELK 90 (142)
T ss_pred cCccCHHHHHHHHHHHhCC--CCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHH
Confidence 3567887766666665421 112 344677788888899999999999999999999887653 367788888
Q ss_pred hhhc-CcchHHHHHHHHHHHHhhhhcChH
Q 007918 480 EMIN-NPHYLYRMTILRAISLLAPVMGSE 507 (585)
Q Consensus 480 ~~l~-~~~~~~R~~a~~~l~~l~~~~~~~ 507 (585)
.++. .....||..++..+..+...++.+
T Consensus 91 ~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 91 DLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 7775 456789999999999998876543
No 256
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=92.08 E-value=16 Score=37.55 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=44.8
Q ss_pred HHHHhhhHHHHHhhhcCc----chHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 007918 468 EWAMQHITPQVLEMINNP----HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 540 (585)
Q Consensus 468 ~~~~~~ll~~l~~~l~~~----~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~ 540 (585)
+.|.+.+++.+-+.+.|. ...+|.-|+..+..+... .. ...-+.+.+.+-|+.+.+|.-+-++..++.
T Consensus 686 e~fr~~iln~l~nY~~d~rGDVgs~iR~~a~klm~SfL~k--D~---~~~~~y~iR~~~dki~~lR~l~yqa~eqI~ 757 (993)
T COG5234 686 EEFRKEILNVLSNYLTDTRGDVGSWIRKPAMKLMSSFLVK--DS---SGKKLYIIRQTFDKIDSLRGLAYQALEQIR 757 (993)
T ss_pred HHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhc--cc---cCCchhHHHHhhcccHHHHhhhhhhhhhee
Confidence 445667777777766554 467888888888775431 10 122257778888888999977777766653
No 257
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=91.86 E-value=15 Score=36.69 Aligned_cols=74 Identities=16% Similarity=0.158 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhccccccCCcchHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHH---hhHHHHHHHhhc
Q 007918 62 EVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLV---DWYIPLVKRLAA 135 (585)
Q Consensus 62 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~l~~ 135 (585)
..|..++++||.+..++..+......-+.|...++++...-|..+...+...+......... ..+.+.+.....
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~ 178 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILE 178 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHc
Confidence 46778899999998887654444444456888889999999999999999888866543222 244444544444
No 258
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=91.83 E-value=18 Score=37.69 Aligned_cols=108 Identities=14% Similarity=0.125 Sum_probs=78.3
Q ss_pred HHHHHHHHHHc-cCCchHHHHHHHHHHHHHHHHhCH-------HH-HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhh
Q 007918 433 DKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGP-------EW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPV 503 (585)
Q Consensus 433 ~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~-------~~-~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~ 503 (585)
+.++.....++ ...+..+-++++.+|..+....+. .. -.++.+|.+.+++...+..+-.++..++.++...
T Consensus 517 p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d 596 (717)
T KOG1048|consen 517 PSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD 596 (717)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence 44555544444 356778888999999988764332 12 3578899999999999999999999999999875
Q ss_pred cCh-HHHHhcHHHHHHhhcCCCC------chHHHHHHHHHHHHH
Q 007918 504 MGS-EITCSRLLPVVINASKDRV------PNIKFNVAKVLQSLI 540 (585)
Q Consensus 504 ~~~-~~~~~~i~~~l~~~l~d~~------~~vR~~~~~~l~~l~ 540 (585)
... +.+-.+.+|.|.+.+-+.. .++-.+++.++-+++
T Consensus 597 ~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv 640 (717)
T KOG1048|consen 597 IRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIV 640 (717)
T ss_pred chhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHH
Confidence 443 3356788999999887654 456667777777776
No 259
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.75 E-value=0.61 Score=36.01 Aligned_cols=67 Identities=19% Similarity=0.217 Sum_probs=44.0
Q ss_pred cHHHHHHhhc-CCCCchHHHHHHHHHHHHHhhhchH-HHH--hhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007918 512 RLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQS-MVE--KTIRPCLVELTEDPDVDVRFFATQAIQSI 578 (585)
Q Consensus 512 ~i~~~l~~~l-~d~~~~vR~~~~~~l~~l~~~~~~~-~~~--~~~~~~l~~l~~D~~~~Vr~~a~~al~~l 578 (585)
.++..|..++ ++.++.+-..+|.=+|.++..++.. .+. -...+.+.++++++|++||..|..|+..+
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4455566666 3336666777777788887776442 121 23667777888899999999988887765
No 260
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.65 E-value=18 Score=37.22 Aligned_cols=105 Identities=15% Similarity=0.130 Sum_probs=72.5
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHH--------HHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCH-
Q 007918 280 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL--------AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK- 350 (585)
Q Consensus 280 ~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~--------~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~- 350 (585)
+..+..++..+.-..|.+.++..+.+...+..+. -.+.++..+.+.+.|.+|.+|..++..+..+...-.+
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 4456677777778888888888888776653321 1245666777778889999998888887776543211
Q ss_pred HHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhh
Q 007918 351 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 384 (585)
Q Consensus 351 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 384 (585)
..-...+...+...++|.+.-||.+|++.++.+.
T Consensus 381 ~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 381 VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 0112345566677788888899999988887765
No 261
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=91.17 E-value=0.96 Score=38.95 Aligned_cols=72 Identities=17% Similarity=0.257 Sum_probs=56.7
Q ss_pred HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhh-hcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc
Q 007918 470 AMQHITPQVLEMINNPHYLYRMTILRAISLLAP-VMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 544 (585)
Q Consensus 470 ~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~-~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~ 544 (585)
..+..++.+++...+++..+|..|++.+..+.+ ++-.. ...+|.++.+..|+++.+|..|...+..+.+..+
T Consensus 5 l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP---~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 5 LVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP---KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh---HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 346678888888888888999999998888775 22222 5678888888888899999888888888877654
No 262
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=90.81 E-value=0.54 Score=39.08 Aligned_cols=59 Identities=22% Similarity=0.167 Sum_probs=37.0
Q ss_pred chHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch
Q 007918 486 HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 545 (585)
Q Consensus 486 ~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~ 545 (585)
...+|.+|.+++..+...+........++..+..+++| .++||.-+...+..++...+.
T Consensus 40 GLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~ 98 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPE 98 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHH
Confidence 45677777777776666544433345667777777777 777777777777777655433
No 263
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=90.78 E-value=0.52 Score=28.54 Aligned_cols=28 Identities=32% Similarity=0.350 Sum_probs=15.1
Q ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007918 552 IRPCLVELTEDPDVDVRFFATQAIQSID 579 (585)
Q Consensus 552 ~~~~l~~l~~D~~~~Vr~~a~~al~~l~ 579 (585)
.+|.|..++.+++.+|+..|.+|++.|+
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4555555555555555555555555543
No 264
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=90.75 E-value=0.48 Score=28.69 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=21.1
Q ss_pred hcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 007918 511 SRLLPVVINASKDRVPNIKFNVAKVLQSLI 540 (585)
Q Consensus 511 ~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~ 540 (585)
...+|.|.++++++++.||..++++++.+.
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 455677777777777777777777777664
No 265
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=90.72 E-value=6.2 Score=31.73 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=61.7
Q ss_pred cCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHH----hhhHHHHHh
Q 007918 405 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVLE 480 (585)
Q Consensus 405 ~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~----~~ll~~l~~ 480 (585)
.+++|..-...++.+..- +.-....+..+.+-+..+++.+...|+..|..+.++.|..+.. ..++..+..
T Consensus 14 ~~~D~~~il~icd~I~~~------~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~ 87 (133)
T cd03561 14 EEPDWALNLELCDLINLK------PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK 87 (133)
T ss_pred CCccHHHHHHHHHHHhCC------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH
Confidence 456776655555555322 1112345667777778888888888888888888887775421 345555666
Q ss_pred hhcC---cchHHHHHHHHHHHHhhhhcCh
Q 007918 481 MINN---PHYLYRMTILRAISLLAPVMGS 506 (585)
Q Consensus 481 ~l~~---~~~~~R~~a~~~l~~l~~~~~~ 506 (585)
++.+ .+..+|..++..+..+...++.
T Consensus 88 l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 88 IAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 6554 3567777777777777765554
No 266
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=90.63 E-value=21 Score=36.10 Aligned_cols=138 Identities=12% Similarity=-0.021 Sum_probs=59.1
Q ss_pred HHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChH----HHHhcHHHH
Q 007918 441 QWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE----ITCSRLLPV 516 (585)
Q Consensus 441 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~----~~~~~i~~~ 516 (585)
....|-...+|.-+...++..+..++.-++....+.+.-..+.|.+..+|......+..+....+.. .+.+.+...
T Consensus 282 sRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~r 361 (740)
T COG5537 282 SRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDR 361 (740)
T ss_pred hhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 3344455555555555555544443333222223333333344555555555555555544322211 134444444
Q ss_pred HHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 007918 517 VINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 581 (585)
Q Consensus 517 l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~~ 581 (585)
+++.+.-...-||..+++.+..+....--+ ..-.-.+..++-|-.++-|.+..+++..++++
T Consensus 362 ILE~~r~D~d~VRi~sik~l~~lr~lg~L~---~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~ 423 (740)
T COG5537 362 ILEFLRTDSDCVRICSIKSLCYLRILGVLS---SSEILIVSSCMLDIIPDSRENIVESVESICKI 423 (740)
T ss_pred HHHHHhhccchhhHHHHHHHHHHHHhcccc---hhHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 444443333336666666665543221000 11111222223344455445555555555554
No 267
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=90.53 E-value=0.34 Score=29.56 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=12.9
Q ss_pred chHHHHHHhccCChHHHHHHHHH
Q 007918 278 DLVPAYVRLLRDNEAEVRIAAAG 300 (585)
Q Consensus 278 ~l~~~l~~ll~d~~~~vr~~a~~ 300 (585)
.+...+...+.|+++.||.++++
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ 40 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVD 40 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHH
Confidence 44555555555666666665554
No 268
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.43 E-value=1.4 Score=34.06 Aligned_cols=55 Identities=13% Similarity=0.115 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHhhchhhCHHH-HH--HhHHHHHHHhhcCCChHHHHHHHHHhHHhh
Q 007918 330 SQHVRSALASVIMGMAPLLGKDA-TI--EQLLPIFLSLLKDEFPDVRLNIISKLDQVN 384 (585)
Q Consensus 330 ~~~vr~~a~~~l~~l~~~~~~~~-~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 384 (585)
++.+-..||.=|+.++...+... .. -.....++.++.+++++||..|+.++..+.
T Consensus 57 d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 57 DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 34444444444444444443211 11 123445666677777777777777766554
No 269
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=90.42 E-value=4.2 Score=32.67 Aligned_cols=96 Identities=9% Similarity=0.128 Sum_probs=68.3
Q ss_pred cCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHH----HhcHHHHHHh
Q 007918 444 QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVIN 519 (585)
Q Consensus 444 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~----~~~i~~~l~~ 519 (585)
.+++|..-...+..+..- ..| ....+..+...+++++..+...|+..+..+++++|..+. ...++..+..
T Consensus 14 ~~~D~~~il~icd~I~~~--~~~----~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~ 87 (133)
T cd03561 14 EEPDWALNLELCDLINLK--PNG----PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK 87 (133)
T ss_pred CCccHHHHHHHHHHHhCC--CCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH
Confidence 456666555444444321 112 245677777788889999999999999999999998542 2356666777
Q ss_pred hcCC---CCchHHHHHHHHHHHHHhhhch
Q 007918 520 ASKD---RVPNIKFNVAKVLQSLIPIVDQ 545 (585)
Q Consensus 520 ~l~d---~~~~vR~~~~~~l~~l~~~~~~ 545 (585)
++.. .++.||..++..+......++.
T Consensus 88 l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 88 IAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 7765 4778999999999998877664
No 270
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=90.37 E-value=7.3 Score=31.66 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=60.9
Q ss_pred hcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHH----hhhHHHHH
Q 007918 404 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVL 479 (585)
Q Consensus 404 ~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~----~~ll~~l~ 479 (585)
..+++|..-...++.+..- ..-....+..+.+-+..+++.+...|+..+..++++.|..+.. ..++..+.
T Consensus 18 ~~~~Dw~~~l~icD~i~~~------~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~ 91 (140)
T PF00790_consen 18 LPSPDWSLILEICDLINSS------PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELV 91 (140)
T ss_dssp SSS--HHHHHHHHHHHHTS------TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHcC------CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHH
Confidence 3456776544444433211 2223456777888888889999999999999988887766432 45677777
Q ss_pred hhhcCcc-hH---HHHHHHHHHHHhhhhcC
Q 007918 480 EMINNPH-YL---YRMTILRAISLLAPVMG 505 (585)
Q Consensus 480 ~~l~~~~-~~---~R~~a~~~l~~l~~~~~ 505 (585)
.++.++. .. ||..++..+..+...++
T Consensus 92 ~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~ 121 (140)
T PF00790_consen 92 KLIKSKKTDPETPVKEKILELLQEWAEAFK 121 (140)
T ss_dssp HHHHHTTTHHHSHHHHHHHHHHHHHHHHTT
T ss_pred HHHccCCCCchhHHHHHHHHHHHHHHHHHC
Confidence 7655432 22 78888888877777663
No 271
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=90.33 E-value=1.1 Score=37.37 Aligned_cols=61 Identities=15% Similarity=0.213 Sum_probs=47.0
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCH
Q 007918 250 DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 311 (585)
Q Consensus 250 d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~ 311 (585)
|+.-.+|.+|.+++..+...+........++..+...++| +.+++.-+...+..++...+.
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~ 98 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPE 98 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHH
Confidence 5667889999999998888777666666778888888888 788999888888888765433
No 272
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.17 E-value=39 Score=38.51 Aligned_cols=233 Identities=13% Similarity=0.140 Sum_probs=110.0
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCccccc---chHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhHHHHHH
Q 007918 250 DKSWRVRYMVANQLYELCEAVGPEPTRM---DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKE 324 (585)
Q Consensus 250 d~~~~vR~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~ 324 (585)
-.++..|..|.+.++.+......+.... .....+.++..|.+..||......+..+...++.. .+.+.++|...-
T Consensus 52 KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~~wl~ 131 (1312)
T KOG0803|consen 52 KRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIPPWLG 131 (1312)
T ss_pred ccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhh
Confidence 3344455555555555554432222111 12223344555666666666666666655554433 333444444444
Q ss_pred hccCCcHHHHHHHHHHHHhhchhhCH-H---HHHHhHHHHHHHhh--------cC-----------CChHHHHHHHHHhH
Q 007918 325 LSSDSSQHVRSALASVIMGMAPLLGK-D---ATIEQLLPIFLSLL--------KD-----------EFPDVRLNIISKLD 381 (585)
Q Consensus 325 ~~~d~~~~vr~~a~~~l~~l~~~~~~-~---~~~~~l~~~l~~~l--------~d-----------~~~~vr~~a~~~l~ 381 (585)
...|.+..|-.+|...+......-.. + ...+.+.++....+ .| ....|-..++..+.
T Consensus 132 ~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ssLl~l~ 211 (1312)
T KOG0803|consen 132 GQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISSSLLLLL 211 (1312)
T ss_pred eecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHHHHHHHH
Confidence 44455444444444444332210000 0 01122222222221 01 11334444555555
Q ss_pred HhhhhhchhHHhhh---------HHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChh---hHHHHHHHHHHHHccCCchH
Q 007918 382 QVNQVIGIDLLSQS---------LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYS 449 (585)
Q Consensus 382 ~l~~~~~~~~~~~~---------ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~ 449 (585)
.+....|.+.-... -...+-.+.+++.+.+|.+..+.+..+.+.+..- .-..++.|.+.....+.+ -
T Consensus 212 ~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~~~~d-~ 290 (1312)
T KOG0803|consen 212 KLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSIDSLD-H 290 (1312)
T ss_pred HHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccccccc-c
Confidence 55544443211110 1123345667888899999998888887765432 123456666666665555 4
Q ss_pred HHHHHHHHHHHHHHHhCHHHH------HhhhHHHHHhhhc
Q 007918 450 IRDAAANNLKRLAEEFGPEWA------MQHITPQVLEMIN 483 (585)
Q Consensus 450 vr~~a~~~l~~l~~~~~~~~~------~~~ll~~l~~~l~ 483 (585)
|.......+..+...+..++. .+.++|.+.+.+.
T Consensus 291 ~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir 330 (1312)
T KOG0803|consen 291 VCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR 330 (1312)
T ss_pred ccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence 444444444444444444432 3557777766655
No 273
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=90.10 E-value=8.3 Score=30.97 Aligned_cols=96 Identities=17% Similarity=0.154 Sum_probs=59.0
Q ss_pred hcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHH----HhhhHHHHH
Q 007918 404 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVL 479 (585)
Q Consensus 404 ~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~ll~~l~ 479 (585)
..+++|..-...++.+..= ..-....+..+.+-+.++++.+...|+..|..++++.|..+. ...++..+.
T Consensus 13 l~~~dw~~~l~icD~i~~~------~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~ 86 (133)
T smart00288 13 LLEEDWELILEICDLINST------PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELV 86 (133)
T ss_pred CCCcCHHHHHHHHHHHhCC------CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHH
Confidence 3456776555554444211 111234566677777788888888888888888888777543 245666666
Q ss_pred hhhcCcc--hHHHHHHHHHHHHhhhhcC
Q 007918 480 EMINNPH--YLYRMTILRAISLLAPVMG 505 (585)
Q Consensus 480 ~~l~~~~--~~~R~~a~~~l~~l~~~~~ 505 (585)
.++.++. ..+|..++..+..+...+.
T Consensus 87 ~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 87 KLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 6655543 2267777777766666553
No 274
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=89.91 E-value=6.3 Score=32.04 Aligned_cols=76 Identities=11% Similarity=0.162 Sum_probs=58.9
Q ss_pred HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHH----HhcHHHHHHhhcCCC-Cch---HHHHHHHHHHHHHhh
Q 007918 471 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKDR-VPN---IKFNVAKVLQSLIPI 542 (585)
Q Consensus 471 ~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~----~~~i~~~l~~~l~d~-~~~---vR~~~~~~l~~l~~~ 542 (585)
....+..+.+.+.+++..+...|+..+..+++++|..+. ...++..+..++.++ ... ||..++..+......
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 355777788888999999999999999999999997753 345777777766643 222 899999999888877
Q ss_pred hchH
Q 007918 543 VDQS 546 (585)
Q Consensus 543 ~~~~ 546 (585)
++..
T Consensus 120 f~~~ 123 (140)
T PF00790_consen 120 FKSD 123 (140)
T ss_dssp TTTS
T ss_pred HCCC
Confidence 7443
No 275
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.81 E-value=32 Score=37.03 Aligned_cols=93 Identities=16% Similarity=0.204 Sum_probs=72.5
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcCh--HH---HHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH
Q 007918 472 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--EI---TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 546 (585)
Q Consensus 472 ~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~--~~---~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~ 546 (585)
..++.....++++++..+|..++.++......+.. +. ......|.++..+.+++|-+-..|+.++.++....|+.
T Consensus 802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF 881 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF 881 (1014)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence 45666667788999999999999999887764432 11 24556778888899999999999999999999887764
Q ss_pred ---HHHhhHHHHHHHhcCCCC
Q 007918 547 ---MVEKTIRPCLVELTEDPD 564 (585)
Q Consensus 547 ---~~~~~~~~~l~~l~~D~~ 564 (585)
.+.+.++|.+..++.|.-
T Consensus 882 v~sR~l~dvlP~l~~~~~~~~ 902 (1014)
T KOG4524|consen 882 VASRFLEDVLPWLKHLCQDSF 902 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567788899998766543
No 276
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=89.72 E-value=6.8 Score=30.00 Aligned_cols=60 Identities=10% Similarity=0.071 Sum_probs=30.1
Q ss_pred ChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcC--CChHHHHHHHHHhHHHHHhhChhh
Q 007918 369 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGF 430 (585)
Q Consensus 369 ~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~--~~~~~r~~~~~~l~~l~~~~~~~~ 430 (585)
...-|..++.+++.+.+ ++.+.. ....|.+...+.. ..+..|..+++++..+.+.++.+.
T Consensus 28 ~~~ek~~~l~si~~lI~-~~~~~i-~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~~ 89 (107)
T PF08064_consen 28 PIPEKKRALRSIEELIK-LGGSHI-SSARPQIMACLQSALEIPELREEALSCWNCFIKTLDEED 89 (107)
T ss_pred CHHHHHHHHHHHHHHHH-HhHHHH-HHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHHH
Confidence 34556666666666666 333222 2344444443322 222556666666666666555443
No 277
>PF05536 Neurochondrin: Neurochondrin
Probab=89.66 E-value=27 Score=35.99 Aligned_cols=174 Identities=11% Similarity=0.139 Sum_probs=111.3
Q ss_pred hHHHHHHHHHHHHHHHHhCCcc----cccchHHHHHHhccCChH-HHHHHHHHHHHHHHHhh-CHHH-HHHhhHHHHHHh
Q 007918 253 WRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDNEA-EVRIAAAGKVTKFCRIL-NPEL-AIQHILPCVKEL 325 (585)
Q Consensus 253 ~~vR~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~ll~d~~~-~vr~~a~~~l~~l~~~~-~~~~-~~~~i~~~l~~~ 325 (585)
...+..++..+..++. .++. ..-.-+|.+.+.+...+. ++...+.++|..++..- |... .....++.+.+.
T Consensus 71 ~~~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei 148 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEI 148 (543)
T ss_pred HHHHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHH
Confidence 3456666666666554 1111 112468888988877665 88899999999988432 2222 233556677666
Q ss_pred ccCCcHHHHHHHHHHHHhhchhhCHHH------HHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhc--------hhH
Q 007918 326 SSDSSQHVRSALASVIMGMAPLLGKDA------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--------IDL 391 (585)
Q Consensus 326 ~~d~~~~vr~~a~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--------~~~ 391 (585)
..+ ++.....+...+..+....+.+. ....+++.+...+.......+-.++.-|+.+....+ .+.
T Consensus 149 ~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~ 227 (543)
T PF05536_consen 149 IPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPK 227 (543)
T ss_pred HHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhh
Confidence 655 66677888888877766655322 233455666666655555666677777777765542 122
Q ss_pred HhhhHHHHHHHHhcC-CChHHHHHHHHHhHHHHHhhChh
Q 007918 392 LSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVG 429 (585)
Q Consensus 392 ~~~~ll~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~ 429 (585)
+...+...+..++.+ .....|..++.....+.+..|.+
T Consensus 228 W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 228 WLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 335566667777665 46788999999999998888754
No 278
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=89.27 E-value=0.85 Score=27.79 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=18.1
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHH
Q 007918 433 DKLGALCMQWLQDKVYSIRDAAANN 457 (585)
Q Consensus 433 ~~l~~~l~~~l~d~~~~vr~~a~~~ 457 (585)
+.+...+...+.|+.+.||++|+++
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3566677777778888888877765
No 279
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=89.22 E-value=21 Score=36.03 Aligned_cols=137 Identities=14% Similarity=0.067 Sum_probs=92.1
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHH----HHHhhhH
Q 007918 400 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE----WAMQHIT 475 (585)
Q Consensus 400 l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~ll 475 (585)
+..-..|.+..+|..+...++...+.++.-++.-..+......|.|.+..||....+.+..++...+.. .+.+.+-
T Consensus 280 fvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk 359 (740)
T COG5537 280 FVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFK 359 (740)
T ss_pred HhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 344557778889999999998888877766666556666777889999999999999999998765432 2445666
Q ss_pred HHHHhhh-cCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 007918 476 PQVLEMI-NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 540 (585)
Q Consensus 476 ~~l~~~l-~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~ 540 (585)
..+++++ .|.+. ||.++++.+..+....--+ ..-.-.+..+.-|..|+-|.+..+.+..++
T Consensus 360 ~rILE~~r~D~d~-VRi~sik~l~~lr~lg~L~---~SeIlIvsscmlDi~pd~r~~~~E~v~~ic 421 (740)
T COG5537 360 DRILEFLRTDSDC-VRICSIKSLCYLRILGVLS---SSEILIVSSCMLDIIPDSRENIVESVESIC 421 (740)
T ss_pred HHHHHHHhhccch-hhHHHHHHHHHHHHhcccc---hhHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 6677765 45566 9999999998876521111 222334444455666664444444444443
No 280
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=89.09 E-value=4.3 Score=32.62 Aligned_cols=74 Identities=14% Similarity=0.184 Sum_probs=58.8
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHH----HhcHHHHHHhhcCCCC--chHHHHHHHHHHHHHhhhch
Q 007918 472 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQ 545 (585)
Q Consensus 472 ~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~----~~~i~~~l~~~l~d~~--~~vR~~~~~~l~~l~~~~~~ 545 (585)
...+..+..-+++++..+...|+..+..+++++|..+. ...++..+..+++++. +.||..++..+......+..
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 44667777788899999999999999999999998653 4567888888877653 33999999999888877653
No 281
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.02 E-value=72 Score=40.03 Aligned_cols=151 Identities=16% Similarity=0.111 Sum_probs=98.0
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHh----CH-H-----HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhh
Q 007918 433 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF----GP-E-----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAP 502 (585)
Q Consensus 433 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~----~~-~-----~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~ 502 (585)
..+++.+...+...+.+++.+...++..+.... |. + .+.+.+++.+..+.-++.|.-|.+++..++.+..
T Consensus 983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 346788888899999999999999998887643 21 1 1235677777888889999999999999988888
Q ss_pred hcChHHH---HhcHHHHHHhhcCCCCch--------HHHHHHHHHHHHHhhhchH----HHHhhHHHHHHHhcCCCCccH
Q 007918 503 VMGSEIT---CSRLLPVVINASKDRVPN--------IKFNVAKVLQSLIPIVDQS----MVEKTIRPCLVELTEDPDVDV 567 (585)
Q Consensus 503 ~~~~~~~---~~~i~~~l~~~l~d~~~~--------vR~~~~~~l~~l~~~~~~~----~~~~~~~~~l~~l~~D~~~~V 567 (585)
.....+. ...++..+...++|...+ ++......+.......... .....++..+..-+.+++..|
T Consensus 1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 7764432 334444445555544222 2222222222222211111 233445555555567889999
Q ss_pred HHHHHHHHHHHHHhhc
Q 007918 568 RFFATQAIQSIDHVMM 583 (585)
Q Consensus 568 r~~a~~al~~l~~~l~ 583 (585)
|..+.+++..+...-+
T Consensus 1143 R~~~~~~L~~i~~~s~ 1158 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSG 1158 (3550)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999887653
No 282
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=88.89 E-value=23 Score=34.12 Aligned_cols=118 Identities=11% Similarity=0.077 Sum_probs=63.4
Q ss_pred HHHHhHHHHHhhhcccchHHHHHHHHHHhccChhHHHHHHHHHHHHhhccCchhhhhhhHHHHHHhccCCChHHHHHHHH
Q 007918 182 SAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVAN 261 (585)
Q Consensus 182 ~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~~~~ 261 (585)
.++..+..+.+....++...+++.++..+++.+..|.....-... .......+.+..++.+.++-+-..+..
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~--------~~k~~~~~~fl~ll~r~d~~iv~~~~~ 136 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAH--------KLKRTEWLSFLNLLNRQDTFIVEMSFR 136 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHH--------hhhccchHHHHHHHhcCChHHHHHHHH
Confidence 444555555555555666677777777766664433322221111 012222444566777788777776777
Q ss_pred HHHHHHHHhCCccccc----chHHHHHHhccC-ChHHHHHHHHHHHHHHHHh
Q 007918 262 QLYELCEAVGPEPTRM----DLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRI 308 (585)
Q Consensus 262 ~l~~l~~~~~~~~~~~----~l~~~l~~ll~d-~~~~vr~~a~~~l~~l~~~ 308 (585)
.+..++.. |...... .....+...+.. .+...+..++++|..+...
T Consensus 137 Ils~la~~-g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~ 187 (442)
T KOG2759|consen 137 ILSKLACF-GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV 187 (442)
T ss_pred HHHHHHHh-ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC
Confidence 77766654 3222222 123333444444 4466777778888877653
No 283
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.73 E-value=38 Score=36.48 Aligned_cols=91 Identities=13% Similarity=0.154 Sum_probs=65.1
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhCh--hhH---HHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHH
Q 007918 394 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFF---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 468 (585)
Q Consensus 394 ~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~--~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 468 (585)
..++..-..++.+++-.+|..+++.+......+.. +.+ .....|.++..+.++++-+-..|+.++..++..-|+-
T Consensus 802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF 881 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF 881 (1014)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence 45556666788999999999999998865554432 111 1234566777888999999999999999999886652
Q ss_pred ---HHHhhhHHHHHhhhcC
Q 007918 469 ---WAMQHITPQVLEMINN 484 (585)
Q Consensus 469 ---~~~~~ll~~l~~~l~~ 484 (585)
.+.+.++|.+...+.+
T Consensus 882 v~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 882 VASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2456677777655443
No 284
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=88.69 E-value=7.9 Score=29.63 Aligned_cols=57 Identities=12% Similarity=0.143 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHhhCHH--HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCH
Q 007918 292 AEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK 350 (585)
Q Consensus 292 ~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~ 350 (585)
..-|..++++++.+.+..++. .+.++++..+...+..+ .+|..++++...+...++.
T Consensus 29 ~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~ 87 (107)
T PF08064_consen 29 IPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDE 87 (107)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCH
Confidence 445556666666666632222 22334444444444333 5566666666666555554
No 285
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=88.28 E-value=17 Score=32.00 Aligned_cols=131 Identities=16% Similarity=0.195 Sum_probs=68.1
Q ss_pred HHHHHHHHhccC--hhHHHHHHHHHHHHhhccCchhhhhhhHHHHHHhccC-CChHHHHHH-HHHHHHHHHHhCCccccc
Q 007918 202 DIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMV-ANQLYELCEAVGPEPTRM 277 (585)
Q Consensus 202 ~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d-~~~~vR~~~-~~~l~~l~~~~~~~~~~~ 277 (585)
....+...+.++ -+.|..++..+........ ...++.+...+.+ ++|.+-... ...++.+... .+
T Consensus 51 ~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~-----~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~------~~ 119 (213)
T PF08713_consen 51 ELYELADELWESGYREERYLALLILDKRRKKLT-----EEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKK------HP 119 (213)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG-------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHH------HG
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhh-----HHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHh------hH
Confidence 333444444444 4456666655544332221 1234445554443 455544444 4444444332 13
Q ss_pred chHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchh
Q 007918 278 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 347 (585)
Q Consensus 278 ~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 347 (585)
...+.+.+..++++.-+|+.++..+...... ...+.++..+...+.|++..||.+...+|..++..
T Consensus 120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 4666667777777766666666555444333 11244555556666777777777777777776654
No 286
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=87.77 E-value=45 Score=37.97 Aligned_cols=70 Identities=10% Similarity=0.177 Sum_probs=45.2
Q ss_pred chHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHH---HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchh
Q 007918 278 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 347 (585)
Q Consensus 278 ~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 347 (585)
..+..+++.|+...-.|-..+|.+|..+......+ .+....++.+..++.+++..+-...+.++.++...
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 45666677777766666666666666665443333 23345677788888888887777777777766443
No 287
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=87.49 E-value=9.5 Score=29.67 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=26.4
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhh
Q 007918 395 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 430 (585)
Q Consensus 395 ~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~ 430 (585)
.++..+..-+.+++|++...++..+..+.++.|..+
T Consensus 37 ~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f 72 (115)
T cd00197 37 EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERF 72 (115)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHH
Confidence 456666666677788888888888888888777554
No 288
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=86.74 E-value=36 Score=33.93 Aligned_cols=191 Identities=12% Similarity=0.143 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhhcCCC-chHHHHHHHHhHHHHHhhhcc---c---chHHHHHHHHHHhccC--hhHHHHHHHHHHHHhhc
Q 007918 160 LKTELRSIYTQLCQDD-MPMVRRSAASNLGKFAATVEP---A---HLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKL 230 (585)
Q Consensus 160 ~~~~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~---~---~~~~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~ 230 (585)
..+.+...+...++++ +|..-.-..++++.+...... + .+.+.++|.+...++. .+.--.+.+.+..+.+.
T Consensus 68 il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~ 147 (435)
T PF03378_consen 68 ILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLEL 147 (435)
T ss_dssp HHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455566666666654 677778888888888776432 2 4677888888887655 44555566777777776
Q ss_pred cCchhhhhhhHHHHHHhccCCChHHH---HHHHHHHHHHHHHhCCccc----ccchHHHHHHhccCChHHHHHHHHHHHH
Q 007918 231 LEPQDCVAHILPVIVNFSQDKSWRVR---YMVANQLYELCEAVGPEPT----RMDLVPAYVRLLRDNEAEVRIAAAGKVT 303 (585)
Q Consensus 231 ~~~~~~~~~~~~~l~~~~~d~~~~vR---~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~ll~d~~~~vr~~a~~~l~ 303 (585)
.+.....+....++..++...-|+-| -+..+.+..+.+.-+.... .+.++..+..++..+..+ ..+.+.|.
T Consensus 148 ~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~ 225 (435)
T PF03378_consen 148 RPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLE 225 (435)
T ss_dssp SS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHH
Confidence 65222222222222233333333311 3344455555444333221 235677777887765422 45777888
Q ss_pred HHHHhhCHHH---HHHhhHHHHH-HhccCCcHHHHHHHHHHHHhhchhhCHHH
Q 007918 304 KFCRILNPEL---AIQHILPCVK-ELSSDSSQHVRSALASVIMGMAPLLGKDA 352 (585)
Q Consensus 304 ~l~~~~~~~~---~~~~i~~~l~-~~~~d~~~~vr~~a~~~l~~l~~~~~~~~ 352 (585)
.+...++.+. +.+.++..+. ++-+.+.++.....+..++-++...|.+.
T Consensus 226 ~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~ 278 (435)
T PF03378_consen 226 SIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDF 278 (435)
T ss_dssp HHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHH
Confidence 8888888764 3344444444 33446677777777777777766666544
No 289
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=86.73 E-value=11 Score=30.70 Aligned_cols=59 Identities=8% Similarity=0.041 Sum_probs=29.2
Q ss_pred chHHHHHHHHHHHHhhhhcChHHH----HhcHHHH-HHhhcCC---CCchHHHHHHHHHHHHHhhhc
Q 007918 486 HYLYRMTILRAISLLAPVMGSEIT----CSRLLPV-VINASKD---RVPNIKFNVAKVLQSLIPIVD 544 (585)
Q Consensus 486 ~~~~R~~a~~~l~~l~~~~~~~~~----~~~i~~~-l~~~l~d---~~~~vR~~~~~~l~~l~~~~~ 544 (585)
+..+..-|+..+..++++||..+. ...++.. +.+.+++ ....||..++..+......++
T Consensus 52 n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~ 118 (141)
T cd03565 52 NHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFR 118 (141)
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhC
Confidence 444444445555555555554322 2344443 4444432 234666666666666655554
No 290
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.50 E-value=47 Score=35.02 Aligned_cols=297 Identities=15% Similarity=0.092 Sum_probs=164.6
Q ss_pred cHHHHHHHhc-ChhHHHHHHHhhhHHHHHHhhChhhhhhhccccccccc-C-CchHHHHHHHHHHhccccccC------C
Q 007918 10 PIAVLIDELK-NDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-D-DDDEVLLAMAEELGVFIPYVG------G 80 (585)
Q Consensus 10 ~i~~l~~~l~-~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~-d-~~~~vr~~~~~~l~~l~~~~~------~ 80 (585)
.|..|.++.. +.=.+.|+.|++.|..+++....+-..+-+-|++..+. | .+++....+...+-.+...-. +
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dd 102 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDD 102 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhccc
Confidence 3788999977 56788999999999999988754333333333333332 2 255655555554443322110 0
Q ss_pred cc--------hH------HhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHH-----hhHHHHHHHhhcCcCccc
Q 007918 81 VE--------HA------HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLV-----DWYIPLVKRLAAGEWFTA 141 (585)
Q Consensus 81 ~~--------~~------~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~-----~~l~~~l~~l~~~~~~~~ 141 (585)
+. ++ ...+.++..++...|-.||..+++-+..+...-|++... +.=+..+..+..|..+.+
T Consensus 103 s~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~I 182 (970)
T KOG0946|consen 103 STQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPI 182 (970)
T ss_pred chhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhh
Confidence 00 00 123445566677889999999999999999888875321 112334455667778889
Q ss_pred hhhHHhhhHhhcCCCChH----HHHHHHHHHHhhcCCC----chHHHHHHHHhHHHHHhhhcc-------cchHHHHHHH
Q 007918 142 RVSACGLFHIAYPSAPDI----LKTELRSIYTQLCQDD----MPMVRRSAASNLGKFAATVEP-------AHLKTDIMSI 206 (585)
Q Consensus 142 r~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d~----~~~vr~~a~~~l~~l~~~~~~-------~~~~~~l~~~ 206 (585)
|-.+..++..+....+.- ....++.-+..++... ...|-..|...+..+.+.... ..+.+.+..+
T Consensus 183 RNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~kl 262 (970)
T KOG0946|consen 183 RNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKL 262 (970)
T ss_pred chhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhh
Confidence 999999999988877652 3345555555555432 246777788888887765432 1223333211
Q ss_pred HHHh-ccC-----hh-HHHHHHHH-HHHHhhccCch------------hhhhhhHHHHHHhccC--CChHHHHHHHHHHH
Q 007918 207 FEDL-TQD-----DS-VRLLAVEG-CAALGKLLEPQ------------DCVAHILPVIVNFSQD--KSWRVRYMVANQLY 264 (585)
Q Consensus 207 l~~l-~~d-----~~-vr~~a~~~-l~~l~~~~~~~------------~~~~~~~~~l~~~~~d--~~~~vR~~~~~~l~ 264 (585)
+... ..| |+ .|...+-. |..+-...++. -....++..+...+-. -...|+..++....
T Consensus 263 L~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvA 342 (970)
T KOG0946|consen 263 LSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVA 342 (970)
T ss_pred cCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHH
Confidence 1111 111 22 34332222 22222222221 1123355555554433 35567777777777
Q ss_pred HHHHHhCC------------ccc-ccchHHHHHHhccCCh-HHHHHHHHHHHHHHH
Q 007918 265 ELCEAVGP------------EPT-RMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFC 306 (585)
Q Consensus 265 ~l~~~~~~------------~~~-~~~l~~~l~~ll~d~~-~~vr~~a~~~l~~l~ 306 (585)
.+.++... ... ...++-.++.+..... ...|.++..++..+.
T Consensus 343 evVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l 398 (970)
T KOG0946|consen 343 EVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYL 398 (970)
T ss_pred HHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 76654211 010 1123334444444433 567888877776653
No 291
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.17 E-value=28 Score=32.11 Aligned_cols=101 Identities=16% Similarity=0.209 Sum_probs=64.0
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHHHhCCc---ccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHH-HHHHhhH
Q 007918 244 IVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-LAIQHIL 319 (585)
Q Consensus 244 l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~i~ 319 (585)
+..++.+.+|.||..|++.+..+... |-. ......++.+.++++|.++ ...++.++..++..-+-. .....++
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~~~ 84 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQDLL 84 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45678888999999998877666544 221 1123578888899988876 445556666666542211 1222344
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhhchh
Q 007918 320 PCVKELSSDSSQHVRSALASVIMGMAPL 347 (585)
Q Consensus 320 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 347 (585)
..+...+.|+.|..-...+..+.++++.
T Consensus 85 k~l~~~~~~p~~~lad~~cmlL~NLs~~ 112 (353)
T KOG2973|consen 85 KVLMDMLTDPQSPLADLICMLLSNLSRD 112 (353)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhccC
Confidence 5555566777777777777777777653
No 292
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=85.73 E-value=45 Score=34.11 Aligned_cols=171 Identities=15% Similarity=0.146 Sum_probs=92.4
Q ss_pred ChhhHHhhHHHHHHHhhcCcC--ccchhhHHhhhHhhcCCCChH-HHH---HHHHHHHhhcC-----CCchHHHHHHHHh
Q 007918 118 RESDLVDWYIPLVKRLAAGEW--FTARVSACGLFHIAYPSAPDI-LKT---ELRSIYTQLCQ-----DDMPMVRRSAASN 186 (585)
Q Consensus 118 ~~~~~~~~l~~~l~~l~~~~~--~~~r~~a~~~l~~~~~~~~~~-~~~---~l~~~l~~l~~-----d~~~~vr~~a~~~ 186 (585)
...+...+++..+-+-..++. |..-...|-++|.+...+++. .++ .++.-++.+|. |+..-|.......
T Consensus 474 ~v~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyv 553 (1053)
T COG5101 474 IVDDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYV 553 (1053)
T ss_pred hhhhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeee
Confidence 334455566666665555553 444555677788887777764 333 33344444442 2211111112222
Q ss_pred HHHHHhhhc--ccchHHHHHHHHHHhccC-hhHHHHHHHHHHHHhhccCc----------hhhhhhhHHHHHHhccCCCh
Q 007918 187 LGKFAATVE--PAHLKTDIMSIFEDLTQD-DSVRLLAVEGCAALGKLLEP----------QDCVAHILPVIVNFSQDKSW 253 (585)
Q Consensus 187 l~~l~~~~~--~~~~~~~l~~~l~~l~~d-~~vr~~a~~~l~~l~~~~~~----------~~~~~~~~~~l~~~~~d~~~ 253 (585)
+|..-..+. .......+..++.-+-.+ +.|+..|+.++-++++.++. +.+...++.-+.+...|-.+
T Consensus 554 vGQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~p 633 (1053)
T COG5101 554 VGQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEP 633 (1053)
T ss_pred eccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCCh
Confidence 222111110 111122222233322333 66999999999999998875 22333444445555667788
Q ss_pred HHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcc
Q 007918 254 RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR 288 (585)
Q Consensus 254 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~ 288 (585)
.-++...++++.+....++....+.++-.+.++..
T Consensus 634 qQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn 668 (1053)
T COG5101 634 QQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPN 668 (1053)
T ss_pred HHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhH
Confidence 88899999999888776655444455544444443
No 293
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=85.57 E-value=15 Score=30.28 Aligned_cols=112 Identities=13% Similarity=0.061 Sum_probs=74.5
Q ss_pred HHHHHHHHccCCc------hHHHHHHHHHHHHHHHH--hCHHHHHhhhHHHHHhhhcCc--chHHHHHHHHHHHHhhhhc
Q 007918 435 LGALCMQWLQDKV------YSIRDAAANNLKRLAEE--FGPEWAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVM 504 (585)
Q Consensus 435 l~~~l~~~l~d~~------~~vr~~a~~~l~~l~~~--~~~~~~~~~ll~~l~~~l~~~--~~~~R~~a~~~l~~l~~~~ 504 (585)
-++.+.+.+++.. .+.-..++.++..+.+. .+.+.....++..+....+.+ +..+-+.++..+.++..+.
T Consensus 12 Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S 91 (160)
T PF11841_consen 12 GLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNS 91 (160)
T ss_pred CHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCC
Confidence 3455555555544 35556667777777663 233444566677776665543 4678888888888887643
Q ss_pred ChH--HH-HhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH
Q 007918 505 GSE--IT-CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 546 (585)
Q Consensus 505 ~~~--~~-~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~ 546 (585)
..- .. .+--++.++..+++.++.++.+++..+-.+....++.
T Consensus 92 ~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 92 PKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 321 12 3444778888888899999999999999888776554
No 294
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=85.47 E-value=18 Score=29.42 Aligned_cols=47 Identities=23% Similarity=0.227 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHH-hhHHHHHHhccCCcHHHHHHHHHH
Q 007918 292 AEVRIAAAGKVTKFCRILNPELAIQ-HILPCVKELSSDSSQHVRSALASV 340 (585)
Q Consensus 292 ~~vr~~a~~~l~~l~~~~~~~~~~~-~i~~~l~~~~~d~~~~vr~~a~~~ 340 (585)
.++...+++++.......+.+.+.+ .+++.+..++.+++- +..|+++
T Consensus 100 ~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~c 147 (148)
T PF08389_consen 100 EELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAEC 147 (148)
T ss_dssp HHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHh
Confidence 5666677777776666555543332 355555555543332 5555544
No 295
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=85.45 E-value=48 Score=34.17 Aligned_cols=75 Identities=13% Similarity=0.088 Sum_probs=52.5
Q ss_pred HhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 007918 464 EFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 542 (585)
Q Consensus 464 ~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~ 542 (585)
.+|.+.-.+..+..+-.++.=.+..+|.+.=-+++-+...-+. -.++..|.++..|.+.+|-.+++.++|-+...
T Consensus 631 AMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSNPq----~~vlDtLsk~shd~D~eva~naIfamGLiGAG 705 (878)
T KOG2005|consen 631 AMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQ----VNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAG 705 (878)
T ss_pred hhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCc----chHHHHHHHhccCcchHHHHHHHHHhccccCC
Confidence 3455544455555555666667778888877777766543222 56778888889999999999999988887544
No 296
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=84.64 E-value=17 Score=28.45 Aligned_cols=71 Identities=20% Similarity=0.251 Sum_probs=50.9
Q ss_pred HhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHH-----HHhhHHHHHHHhcC--------CCCccHHHHHHHHHH
Q 007918 510 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM-----VEKTIRPCLVELTE--------DPDVDVRFFATQAIQ 576 (585)
Q Consensus 510 ~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~-----~~~~~~~~l~~l~~--------D~~~~Vr~~a~~al~ 576 (585)
...++..|.+-++++++.|+.-++++|..++...++.. ....++..+.++.. |+...||..|..+++
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 46888999999999999999999999999987755431 11233444444433 334679999999988
Q ss_pred HHHH
Q 007918 577 SIDH 580 (585)
Q Consensus 577 ~l~~ 580 (585)
.|..
T Consensus 116 ~if~ 119 (122)
T cd03572 116 AIFS 119 (122)
T ss_pred HHhc
Confidence 7753
No 297
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=84.54 E-value=21 Score=32.48 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhhchH
Q 007918 528 IKFNVAKVLQSLIPIVDQS 546 (585)
Q Consensus 528 vR~~~~~~l~~l~~~~~~~ 546 (585)
+|.-++..++..+..++..
T Consensus 303 lRd~AA~ll~yV~~~F~~~ 321 (450)
T COG5095 303 LRDVAADLLKYVFSNFSSS 321 (450)
T ss_pred HHHHHHHHHHHHHhhhhHh
Confidence 6666666666666665543
No 298
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=84.13 E-value=9.1 Score=33.19 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=15.8
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHHHH
Q 007918 435 LGALCMQWLQDKVYSIRDAAANNLKRLA 462 (585)
Q Consensus 435 l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 462 (585)
++..+.+...+.-..||..|..++..+.
T Consensus 8 ~~~~llrqa~EKiDrvR~~A~~~l~~ll 35 (193)
T PF12612_consen 8 IIGGLLRQAAEKIDRVREVAGKCLQRLL 35 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444445555566666666666665
No 299
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=83.79 E-value=3.4 Score=40.69 Aligned_cols=108 Identities=9% Similarity=0.072 Sum_probs=82.5
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHHHHH---HhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHH-
Q 007918 433 DKLGALCMQWLQDKVYSIRDAAANNLKRLAE---EFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI- 508 (585)
Q Consensus 433 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~---~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~- 508 (585)
..+...+++.+++++..|...+...+..+.- .+|..+....++..+.+++.+.+...|....+.+.++.-++..+.
T Consensus 430 ~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek 509 (743)
T COG5369 430 YPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK 509 (743)
T ss_pred cchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh
Confidence 3467888899999877776666666655543 345556678899999999988888999999999998887776652
Q ss_pred --H-HhcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 007918 509 --T-CSRLLPVVINASKDRVPNIKFNVAKVLQSLI 540 (585)
Q Consensus 509 --~-~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~ 540 (585)
+ ...=+.-++++.+|+...|...+++.+.++.
T Consensus 510 f~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNft 544 (743)
T COG5369 510 FKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFT 544 (743)
T ss_pred hhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcc
Confidence 2 2233567888999999999999999998874
No 300
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=83.34 E-value=46 Score=32.31 Aligned_cols=108 Identities=9% Similarity=0.087 Sum_probs=70.8
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCH--HHHHhhhHHHHHhh-----hcCcchHHHHHHHHHHHHhhh-hc
Q 007918 433 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEM-----INNPHYLYRMTILRAISLLAP-VM 504 (585)
Q Consensus 433 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~-----l~~~~~~~R~~a~~~l~~l~~-~~ 504 (585)
++++..+.+++.+.+.+....+.-++|.+++.-.. .+..+.+++.++.. --|.|-.+..+++.++.+++- ..
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 34777888899999999999999999999874222 12223444444443 345677888899999999864 33
Q ss_pred ChHHH-HhcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 007918 505 GSEIT-CSRLLPVVINASKDRVPNIKFNVAKVLQSLI 540 (585)
Q Consensus 505 ~~~~~-~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~ 540 (585)
....+ ...+...++..++-..|.|....+.++.-+.
T Consensus 394 nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~ 430 (604)
T KOG4500|consen 394 NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIR 430 (604)
T ss_pred chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 33322 2334455666666677777776666665544
No 301
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=83.31 E-value=36 Score=31.10 Aligned_cols=131 Identities=18% Similarity=0.240 Sum_probs=70.6
Q ss_pred hHHHHHHhccCCh-----HHHHHHHHHHHHHHHHhhCHHHHHHhhHHHH-HHhccCCcHHHHHHHHHHHHhhchhhCHHH
Q 007918 279 LVPAYVRLLRDNE-----AEVRIAAAGKVTKFCRILNPELAIQHILPCV-KELSSDSSQHVRSALASVIMGMAPLLGKDA 352 (585)
Q Consensus 279 l~~~l~~ll~d~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l-~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~ 352 (585)
.+|.+...+++++ ..++ .+++.+..+++..+.... ..++..+ ..-.++.+.-++. .+..+.+.+.++.
T Consensus 112 ~LP~ll~~~d~~~~i~~~~~~~-~~A~~La~~a~~~~~~~L-a~il~~ya~~~fr~~~dfl~~----v~~~l~~~f~P~~ 185 (262)
T PF14225_consen 112 LLPRLLHAFDDPNPIQPDQECI-EIAEALAQVAEAQGLPNL-ARILSSYAKGRFRDKDDFLSQ----VVSYLREAFFPDH 185 (262)
T ss_pred HHHHHHHHhcccccccccHHHH-HHHHHHHHHHHhCCCccH-HHHHHHHHhcCCCCHHHHHHH----HHHHHHHHhCchh
Confidence 4566666665555 3333 555777777765444332 2222222 1222232222222 2223333332222
Q ss_pred HHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchh-HHhhhHHHHHHHHhcCCChHHHHHHH
Q 007918 353 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-LLSQSLLPAIVELAEDRHWRVRLAII 416 (585)
Q Consensus 353 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~ll~~l~~~~~~~~~~~r~~~~ 416 (585)
...++-.+..++.+.-+.+|......|..+.+....+ .....++..+.++++.+.|..-..++
T Consensus 186 -~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~~eAL~VL 249 (262)
T PF14225_consen 186 -EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLWMEALEVL 249 (262)
T ss_pred -HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccHHHHHHHH
Confidence 2345566777888888899999999888888765422 13345666677788887776433333
No 302
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=82.90 E-value=18 Score=27.60 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=31.8
Q ss_pred HHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcC--CChHHHHHHHHHhHHHHHhhChhh
Q 007918 371 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGF 430 (585)
Q Consensus 371 ~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~--~~~~~r~~~~~~l~~l~~~~~~~~ 430 (585)
.-|..++.+++.+.+..|.. .....|.+...+.. ..+..|..+++++..+.+.++.+.
T Consensus 30 ~ek~~~i~ai~~lI~~~g~~--i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~~~~ 89 (107)
T smart00802 30 NEKKRALRSIGFLIKLMGKH--ISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLKEEE 89 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCCHHH
Confidence 34667777777777654432 13444544443332 234466666666666666665443
No 303
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=82.65 E-value=51 Score=36.27 Aligned_cols=90 Identities=17% Similarity=0.153 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHH----Hhh-hchHHHHhhH---HHHHHH
Q 007918 487 YLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL----IPI-VDQSMVEKTI---RPCLVE 558 (585)
Q Consensus 487 ~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l----~~~-~~~~~~~~~~---~~~l~~ 558 (585)
-.+|.++..++...+.+.+.......+++.+. .|++|.+|...+..+..- ... .+.......+ .+.+.+
T Consensus 882 vd~r~~a~~~~v~~~~~~~~~~~l~~~leil~---~~~dp~~R~~i~~ml~~~~np~~~~~~~s~~~~~~~~~~~~~~~~ 958 (1180)
T KOG1932|consen 882 VDVRICAEELNVDLGGVDGSPDDLAYILEILE---NDPDPVIRHKILDMLSQSNNPVTKGGTESDLLKEALVERLWKLKN 958 (1180)
T ss_pred hhhHHHhhhhhhhhcccCCChHHHHHHhhhcc---cCcchHHHHHHHHHhhccCCceeeccccCccccHHHHHhhhhhhc
Confidence 46888888888888776554333334333332 578899999999988872 111 1222222223 334444
Q ss_pred hcCCCCccHHHHHHHHHHHHH
Q 007918 559 LTEDPDVDVRFFATQAIQSID 579 (585)
Q Consensus 559 l~~D~~~~Vr~~a~~al~~l~ 579 (585)
....+|...|..+..++-.|.
T Consensus 959 ~~k~~D~~~r~~v~d~~~~L~ 979 (1180)
T KOG1932|consen 959 LSKEPDICSRSSVLDVYIALF 979 (1180)
T ss_pred cCCCCCeEeEeehhhhhhhee
Confidence 445566666666555554443
No 304
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=82.21 E-value=25 Score=28.52 Aligned_cols=99 Identities=14% Similarity=0.201 Sum_probs=69.4
Q ss_pred HhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHcc-CCchHHHHHHHHHHHHHHHHhCHHHH----HhhhHHH
Q 007918 403 LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQ 477 (585)
Q Consensus 403 ~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~ll~~ 477 (585)
.+.+++|..-...++.+.. +..|+ ...+..+.+-+. ..+..|...|+..+..++++.|..+. ...++..
T Consensus 13 ~l~~~dw~~ileicD~In~--~~~~~----k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e 86 (141)
T cd03565 13 SLQSEDWGLNMEICDIINE--TEDGP----KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKD 86 (141)
T ss_pred CCCCcCHHHHHHHHHHHhC--CCCcH----HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhH
Confidence 3456788877777776643 22232 335566666665 56888999999999999999887653 3567776
Q ss_pred -HHhhhcC---cchHHHHHHHHHHHHhhhhcChH
Q 007918 478 -VLEMINN---PHYLYRMTILRAISLLAPVMGSE 507 (585)
Q Consensus 478 -l~~~l~~---~~~~~R~~a~~~l~~l~~~~~~~ 507 (585)
+..++.+ ....|+...+..+..+...++.+
T Consensus 87 ~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~ 120 (141)
T cd03565 87 VLVKLINPKNNPPTIVQEKVLALIQAWADAFRGS 120 (141)
T ss_pred HHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 7777653 34588999999999888776543
No 305
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=82.02 E-value=72 Score=33.58 Aligned_cols=68 Identities=16% Similarity=0.184 Sum_probs=47.7
Q ss_pred HhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhh
Q 007918 316 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 385 (585)
Q Consensus 316 ~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 385 (585)
..++..+..+..|+-..|+..++..+..+...-+.+ -..++..+.+.+.|++..+-..|.-.|..+..
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEq--E~~LL~~lVNKlGDpqnKiaskAsylL~~L~~ 370 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQ--ENNLLVLLVNKLGDPQNKIASKASYLLEGLLA 370 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHH--HHHHHHHHHHhcCCcchhhhhhHHHHHHHHHh
Confidence 456677778888888888888888877765443322 34567778888888877777666666665543
No 306
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=81.85 E-value=23 Score=27.81 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=22.3
Q ss_pred hhHHHHHHHHhc-CCChHHHHHHHHHhHHHHHhhC
Q 007918 394 QSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLG 427 (585)
Q Consensus 394 ~~ll~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~ 427 (585)
..++|.+...++ ....+.|.++...++.++....
T Consensus 5 ~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~ 39 (121)
T PF12397_consen 5 PRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP 39 (121)
T ss_pred HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC
Confidence 456677766666 5666777777777777665543
No 307
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=80.52 E-value=3.1 Score=22.90 Aligned_cols=13 Identities=31% Similarity=0.232 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHh
Q 007918 488 LYRMTILRAISLL 500 (585)
Q Consensus 488 ~~R~~a~~~l~~l 500 (585)
.+|..++.+++++
T Consensus 2 ~vR~~aa~aLg~~ 14 (30)
T smart00567 2 LVRHEAAFALGQL 14 (30)
T ss_pred HHHHHHHHHHHHc
Confidence 4566666666655
No 308
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=80.35 E-value=74 Score=32.66 Aligned_cols=151 Identities=7% Similarity=0.076 Sum_probs=89.4
Q ss_pred HHHHHHHHhcCC--ChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHH--------ccCCchHHHHHHHHHHHHHHHHh
Q 007918 396 LLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW--------LQDKVYSIRDAAANNLKRLAEEF 465 (585)
Q Consensus 396 ll~~l~~~~~~~--~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~--------l~d~~~~vr~~a~~~l~~l~~~~ 465 (585)
+...+...+.++ +|..-...+++++.++-..+...-...++..+-++ -.|...-|-....-.+|+.-+.+
T Consensus 482 mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFL 561 (1053)
T COG5101 482 MIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFL 561 (1053)
T ss_pred HHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeeccchHHH
Confidence 334444444444 46666778888888876655332222222222222 23333333333333344443333
Q ss_pred CHHH-HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHH----------HHhcHHHHHHhhcCCCCchHHHHHHH
Q 007918 466 GPEW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----------TCSRLLPVVINASKDRVPNIKFNVAK 534 (585)
Q Consensus 466 ~~~~-~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~----------~~~~i~~~l~~~l~d~~~~vR~~~~~ 534 (585)
...+ |.+.++..+.+.+......++..|+..+-.+++.|+..+ |...++..+-....|-.|.-....-+
T Consensus 562 kahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYe 641 (1053)
T COG5101 562 KAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYE 641 (1053)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHH
Confidence 3332 456677777788888888999999999999988775433 34445555555556667877888888
Q ss_pred HHHHHHhhhchH
Q 007918 535 VLQSLIPIVDQS 546 (585)
Q Consensus 535 ~l~~l~~~~~~~ 546 (585)
+++.++...+..
T Consensus 642 Acg~vIse~p~~ 653 (1053)
T COG5101 642 ACGMVISEVPKT 653 (1053)
T ss_pred HHhHHHhccchh
Confidence 888888766554
No 309
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=80.24 E-value=24 Score=26.97 Aligned_cols=59 Identities=17% Similarity=0.180 Sum_probs=40.1
Q ss_pred hHHHHHHHHhHHHHHhhhcc--cchHHHHHHHHHHhccChhHHHHHHHHHHHHhhccCchh
Q 007918 177 PMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQDDSVRLLAVEGCAALGKLLEPQD 235 (585)
Q Consensus 177 ~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d~~vr~~a~~~l~~l~~~~~~~~ 235 (585)
..-|+.+..+++.+.+..++ ....+++...+...++.++.|..+++++..+...++++.
T Consensus 29 ~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~~~~ 89 (107)
T smart00802 29 YNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLKEEE 89 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCCHHH
Confidence 35588888888888886543 123344444444444457899999999999988887644
No 310
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=79.83 E-value=68 Score=31.93 Aligned_cols=350 Identities=10% Similarity=0.096 Sum_probs=158.2
Q ss_pred HHHHHHHHHhccC--hhHHHHHHHHHHHHhhccCchhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccc--
Q 007918 201 TDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-- 276 (585)
Q Consensus 201 ~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~-- 276 (585)
.++..++..-..- +..|...+.+|.-+-- ..-.....++..+..++.-.+...|..+..-+....+.+....-.
T Consensus 19 ~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrN--k~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~kn~k 96 (616)
T KOG2229|consen 19 SELKDLLRTNHTVLPPELREKIVKALILLRN--KNLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKHKNDK 96 (616)
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHHhc--cCcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhcccch
Confidence 3344444433333 5688888887765421 112234567777777777777778888887777666665553221
Q ss_pred --cchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHH-HhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHH
Q 007918 277 --MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI-QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT 353 (585)
Q Consensus 277 --~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~ 353 (585)
..+...++.++.++++. ++..++..+++......|. ..-+..+...+-+.++++..+++..+-.--..-. +..
T Consensus 97 lnkslq~~~fsml~~~d~~---~ak~a~~~~~eL~kr~iW~d~~tV~i~~~acf~~~~ki~vs~l~FfL~~D~~de-e~d 172 (616)
T KOG2229|consen 97 LNKSLQAFMFSMLDQSDST---AAKMALDTMIELYKRNIWNDSKTVNIITTACFSKVPKILVSGLRFFLGADNEDE-EDD 172 (616)
T ss_pred HHHHHHHHHHHHHhCCCch---hHHHHHHHHHHHHHhcccccchhHHHHHHHHhccCcHHHHhhhHHhccCCcccc-ccc
Confidence 24667778888888765 4455555555443332221 1111122222222333333333222211100000 000
Q ss_pred HHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHh-----cCCChHHHHHHHHHhHHHHHhhCh
Q 007918 354 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-----EDRHWRVRLAIIEYIPLLASQLGV 428 (585)
Q Consensus 354 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~-----~~~~~~~r~~~~~~l~~l~~~~~~ 428 (585)
.+. -..+..+.++.-..+. +...-+... ..+........ +...+..-..++..+ -.+
T Consensus 173 sd~-------~~d~dg~~~~~l~~~~---vnkktkkr~--~kl~~a~k~vkkkqk~~~~~~t~nfs~i~ll------~Dp 234 (616)
T KOG2229|consen 173 SDS-------ESDEDGPDADALLHQR---VNKKTKKRQ--KKLLRAAKSVKKKQKKKKNAPTFNFSAIHLL------HDP 234 (616)
T ss_pred ccc-------ccccccccHHHHHHHH---HhccchhhH--HHHHHHHHHHHHHHhcCCCCCCCCccHHHhh------cCh
Confidence 000 0000011222211111 111111110 11222222111 111122112222222 245
Q ss_pred hhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHH-HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChH
Q 007918 429 GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 507 (585)
Q Consensus 429 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~ 507 (585)
+-|.+.+.+.+... -...++|...+..+..++ |.. .+.=.+.|.+...++.....+.+....+....-...+++
T Consensus 235 Q~fAEkLfk~~~~~--~er~E~klm~~~lisRli---G~HkL~l~~fY~fl~~yl~phqrDvTqIl~~aaQa~Hd~VP~d 309 (616)
T KOG2229|consen 235 QGFAEKLFKQLLAC--KERFEVKLMLMKLISRLI---GIHKLFLFGFYPFLQRYLQPHQRDVTQILAAAAQASHDLVPPD 309 (616)
T ss_pred hHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHh---hhhHHHHhhhHHHHHHHcCcchhhHHHHHHHHHHhccCCCChH
Confidence 55666666666554 344567766666666554 443 244567888888888776555544443333333334444
Q ss_pred HHHhcHHHHHHhhcCCC-CchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 007918 508 ITCSRLLPVVINASKDR-VPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 581 (585)
Q Consensus 508 ~~~~~i~~~l~~~l~d~-~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~~ 581 (585)
...+.+..+.-..+.|. .|+|-...+.++-+++...+. ...+.++.-|..+-...+. +-..|++++-++...
T Consensus 310 ~iEpl~k~Ian~FVtD~~spEv~~vgiN~iREic~Rvpl-aMteeLLqDLa~YK~sk~K-~V~maarSLI~L~Re 382 (616)
T KOG2229|consen 310 IIEPLLKTIANNFVTDENSPEVMAVGINAIREICERVPL-AMTEELLQDLASYKTSKKK-VVMMAARSLIALYRE 382 (616)
T ss_pred HhhHHHHHHHHHhcccCCCcceeehhhhHHHHHHhhcch-hhcHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHH
Confidence 33233333333445554 455555555555555544432 2234555555555443333 344555555555443
No 311
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=79.57 E-value=38 Score=33.05 Aligned_cols=145 Identities=17% Similarity=0.107 Sum_probs=90.7
Q ss_pred HHHHHHHccCCch--HHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcc-hHHHHHHHHHHHHhhhhcCh---HHH
Q 007918 436 GALCMQWLQDKVY--SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPH-YLYRMTILRAISLLAPVMGS---EIT 509 (585)
Q Consensus 436 ~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~-~~~R~~a~~~l~~l~~~~~~---~~~ 509 (585)
+..++.++..++. .||..+...|.++...-..+.....=+..++++.+... .......+..++++.++... ..+
T Consensus 182 lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lv 261 (832)
T KOG3678|consen 182 LDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLV 261 (832)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4566667666654 56999999988887654444433333444555443332 23334455666666654332 112
Q ss_pred HhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH----HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007918 510 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 510 ~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~ 580 (585)
....+..++..+.-.+|.+-..++-+|+++..+-+.. .+...+-+.|.-+....|.-.|.+|+-|+..+..
T Consensus 262 aa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 262 AAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT 336 (832)
T ss_pred hhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence 3344555666666667888888999999987664432 4445566777777666788889999988877654
No 312
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.71 E-value=71 Score=31.53 Aligned_cols=356 Identities=14% Similarity=0.142 Sum_probs=167.4
Q ss_pred hHHHHHHHHHHHHhhccCch--hhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCc--ccccchHHHHHHhccCC
Q 007918 215 SVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDN 290 (585)
Q Consensus 215 ~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~ll~d~ 290 (585)
..-..|+..+-++++...-+ -....+...+.+.+.-++...-..+...+..+.-....+ .....++.-+..++.-.
T Consensus 278 qLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~ 357 (791)
T KOG1222|consen 278 QLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ 357 (791)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC
Confidence 34556777777777765532 334567777778877777766666666666655433222 12335777788888888
Q ss_pred hHHHHHHHHHHHHHHHHhhC--HHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhc--hhhCHHHHHHhHHHHHHH-hh
Q 007918 291 EAEVRIAAAGKVTKFCRILN--PELAIQHILPCVKELSSDSSQHVRSALASVIMGMA--PLLGKDATIEQLLPIFLS-LL 365 (585)
Q Consensus 291 ~~~vr~~a~~~l~~l~~~~~--~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~--~~~~~~~~~~~l~~~l~~-~l 365 (585)
.++.|...+..+-.++-..| +.-+.--++|.+..++.+.... ..|...+--++ ..+..-......+|.+.+ .+
T Consensus 358 h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~ 435 (791)
T KOG1222|consen 358 HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKH--GIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVL 435 (791)
T ss_pred CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccc--hhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHH
Confidence 88999998888777654322 2223345677777777655431 11111111111 000001112223333332 23
Q ss_pred cCCChHHHHHHHHHhHHhhhhhchhHH---hhhHHHHHH-HHhcCCChHHHHHHHHHhHHHHHhhChh--hHHHHHHHHH
Q 007918 366 KDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIV-ELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALC 439 (585)
Q Consensus 366 ~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~ll~~l~-~~~~~~~~~~r~~~~~~l~~l~~~~~~~--~~~~~l~~~l 439 (585)
...+..|-...+...-.++-.-...++ .+. +..+. ..++..+. ..+..+..++.+-|+. .|-+.+-.+.
T Consensus 436 ~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqg-L~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn~FidyvgdLa 510 (791)
T KOG1222|consen 436 SGTGSEVDLALIALCINLCLNKRNAQLVCEGQG-LDLLMERAIKSRDL----LLMKVVRNISQHEGATQNMFIDYVGDLA 510 (791)
T ss_pred hcCCceecHHHHHHHHHHHhccccceEEecCcc-hHHHHHHHhcccch----HHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 333334433333222222110000000 000 01111 11122221 1233334444443321 1112111111
Q ss_pred HHHccCCchHHHHHHHHHHHHHHHHh----CHHHH--HhhhHHHHHhhhcCc--chHHHHHHHHHHHHhhhhcChHHH--
Q 007918 440 MQWLQDKVYSIRDAAANNLKRLAEEF----GPEWA--MQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEIT-- 509 (585)
Q Consensus 440 ~~~l~d~~~~vr~~a~~~l~~l~~~~----~~~~~--~~~ll~~l~~~l~~~--~~~~R~~a~~~l~~l~~~~~~~~~-- 509 (585)
-..-.|.+.+ ..++++|.++..- ..... ...++|.+...+... ........+-++|.++........
T Consensus 511 ~i~~nd~~E~---F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla 587 (791)
T KOG1222|consen 511 GIAKNDNSES---FGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLA 587 (791)
T ss_pred HHhhcCchHH---HHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhC
Confidence 1112233333 5566666665421 11111 245777777665433 122333334444444432222222
Q ss_pred HhcHHHHHHhhcCCC--CchHHHHHHHHHHHHHhh-hchH-HHHh-hHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007918 510 CSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPI-VDQS-MVEK-TIRPCLVELTEDPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 510 ~~~i~~~l~~~l~d~--~~~vR~~~~~~l~~l~~~-~~~~-~~~~-~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~ 580 (585)
...+++.++++++.. +.+.-...+..+.++..+ .... .+.+ ..-..+..++.|.+.+||..+-.|+.-|+.
T Consensus 588 ~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae 663 (791)
T KOG1222|consen 588 PAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAE 663 (791)
T ss_pred ccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 245777777777532 333333445555555433 1111 2222 344556678999999999999999887764
No 313
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=78.27 E-value=14 Score=34.90 Aligned_cols=104 Identities=13% Similarity=0.304 Sum_probs=71.5
Q ss_pred cCCChHHHHHHHHHHHHHHHHhCCcc-cccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHH----HhhHHHHH
Q 007918 249 QDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI----QHILPCVK 323 (585)
Q Consensus 249 ~d~~~~vR~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~----~~i~~~l~ 323 (585)
..++|.+-. .+|..++.+. .....+..+.+.++..++.|...|+..++.+...+|..... ..+..-+.
T Consensus 22 T~enW~~Il-------DvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~ 94 (462)
T KOG2199|consen 22 TSENWSLIL-------DVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELR 94 (462)
T ss_pred ccccHHHHH-------HHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHH
Confidence 345665433 3344444322 23467888889999999999999999999999888865332 34555566
Q ss_pred Hhcc-CCcHHHHHHHHHHHHhhchhhCHHHHHHhHHH
Q 007918 324 ELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLP 359 (585)
Q Consensus 324 ~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 359 (585)
.++. ..+++|+......+..+++.+.++..+..+..
T Consensus 95 al~~~~~h~kV~~k~~~lv~eWsee~K~Dp~lsLi~~ 131 (462)
T KOG2199|consen 95 ALIESKAHPKVCEKMRDLVKEWSEEFKKDPSLSLISA 131 (462)
T ss_pred HHHhhcccHHHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 6666 66789999988888889888776655444333
No 314
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.20 E-value=1.3e+02 Score=34.28 Aligned_cols=216 Identities=13% Similarity=0.129 Sum_probs=113.0
Q ss_pred HhhcCCChHHHHHHHHHhHHhhhhhchhHHh--hhHHHHHHHHhc---CCChHHHHHHHHHhHHHHH----hhChhhHHH
Q 007918 363 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLS--QSLLPAIVELAE---DRHWRVRLAIIEYIPLLAS----QLGVGFFDD 433 (585)
Q Consensus 363 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~ll~~l~~~~~---~~~~~~r~~~~~~l~~l~~----~~~~~~~~~ 433 (585)
.....+.-+||.....++-.+.+..|...+. +.+...+..... .+...+-..+...+.-+.. .++.+.+ .
T Consensus 849 ~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci-~ 927 (1610)
T KOG1848|consen 849 SDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI-L 927 (1610)
T ss_pred HHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH-H
Confidence 3344556788999999998888877764331 233333333222 1233333333344433322 1222221 2
Q ss_pred HHHHHHHHHc-cCCchHHHHHHHHHHHHHHHHhCH-------HH----------------------HHhhhHHHHHhhhc
Q 007918 434 KLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGP-------EW----------------------AMQHITPQVLEMIN 483 (585)
Q Consensus 434 ~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~-------~~----------------------~~~~ll~~l~~~l~ 483 (585)
.+++.+.... +..+.++--.|+..+-.+...+.. +. ..-.++..+.++..
T Consensus 928 ~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ 1007 (1610)
T KOG1848|consen 928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCE 1007 (1610)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhc
Confidence 2333333322 233444545555444333332211 10 00123444556667
Q ss_pred CcchHHHHHHHHHHHHhhhhcC----hHH----HHhcHHHHHHhhcC---CC--CchH----HHHHHHHHHHHHhhhchH
Q 007918 484 NPHYLYRMTILRAISLLAPVMG----SEI----TCSRLLPVVINASK---DR--VPNI----KFNVAKVLQSLIPIVDQS 546 (585)
Q Consensus 484 ~~~~~~R~~a~~~l~~l~~~~~----~~~----~~~~i~~~l~~~l~---d~--~~~v----R~~~~~~l~~l~~~~~~~ 546 (585)
|+...||..|++.+-.+....| +.. +...++|.|-..-. ++ ...+ -..++-+++.++..++..
T Consensus 1008 dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~ 1087 (1610)
T KOG1848|consen 1008 DSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSEN 1087 (1610)
T ss_pred cchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHH
Confidence 8889999999999999887544 332 24555555542110 11 1111 123444444444333221
Q ss_pred -----------HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007918 547 -----------MVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 579 (585)
Q Consensus 547 -----------~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~ 579 (585)
..-+.++..+.++..|..+++...|.+++..+-
T Consensus 1088 fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1088 FKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 344678888889999999999999999988764
No 315
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=77.79 E-value=54 Score=29.60 Aligned_cols=175 Identities=17% Similarity=0.220 Sum_probs=85.5
Q ss_pred hcCCChHHHHHHHHHhHHhhhhh----chh----H-H--hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHH
Q 007918 365 LKDEFPDVRLNIISKLDQVNQVI----GID----L-L--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD 433 (585)
Q Consensus 365 l~d~~~~vr~~a~~~l~~l~~~~----~~~----~-~--~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~ 433 (585)
++|+++.|.+.++.+.+.+...+ ... . + ...+-..+...+.+.++.+|..++..+..+.-......-.+
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~ 81 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDS 81 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCC
Confidence 56667777777777766665431 100 0 0 01233444555666777777777777777665443221100
Q ss_pred HHH-----HHHHHHccCCc-----hHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCc--chHHHHHHHHHHHHhh
Q 007918 434 KLG-----ALCMQWLQDKV-----YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP--HYLYRMTILRAISLLA 501 (585)
Q Consensus 434 ~l~-----~~l~~~l~d~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~--~~~~R~~a~~~l~~l~ 501 (585)
.-. ..-+..+.... ..+...| ..++..++..+.++ +...-.+.+.++..|+
T Consensus 82 ~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea-----------------~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Ia 144 (239)
T PF11935_consen 82 PPRRGSPNDFSLSSVPPNHPLLNPQQLEAEA-----------------NGLLDRLLDVLQSPHISSPLLTAIINSLSNIA 144 (239)
T ss_dssp ---GGGTTS--GGGS-TT-SSS-HHHHHHHH-----------------HHHHHHHHHHHC-TT--HHHHHHHHHHHHHHH
T ss_pred ccccccccCCCHHHcCCCCCcCCHHHHHHHH-----------------HHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 000 00000000000 1122222 34555555555444 3566677888888888
Q ss_pred hhcChHHHHhcHHHHHHhhcCCC----C--------chHHHHHHHHHHHHHhhhchHHHHhhHHHHHHH
Q 007918 502 PVMGSEITCSRLLPVVINASKDR----V--------PNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVE 558 (585)
Q Consensus 502 ~~~~~~~~~~~i~~~l~~~l~d~----~--------~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~ 558 (585)
+.-+. +...+++.+..+-.+. . ..|+...-..+..+..+-....+...+...|..
T Consensus 145 k~RP~--~~~~Il~~ll~~~~~~~~~~~~~~~~~~v~sv~k~lk~~l~~llk~~~~~~~~~~i~~~L~~ 211 (239)
T PF11935_consen 145 KQRPQ--FMSRILPALLSFNPNLSPMQPPTLSKLQVKSVEKTLKIFLLHLLKHPASSPFQGRITQALTD 211 (239)
T ss_dssp HHSGG--GHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHHHHHHHHHTSGGGGGGHHHHHHHHHH
T ss_pred HHhhH--HHHHHHHHHHhcCccccccCCccchHHHHHHHHHHHHHHHHHHHCCCCchhhHHHHHHHHHH
Confidence 75544 5677888887765543 1 234444444455555443333555666666664
No 316
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=77.75 E-value=16 Score=29.60 Aligned_cols=54 Identities=22% Similarity=0.198 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccChhHHH
Q 007918 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDSVRL 218 (585)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~vr~ 218 (585)
..+++...+..++.+++++|++.|.+++..+-. +.+.++ -..+..+++|...|.
T Consensus 14 ~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~----~~l~pY-~d~L~~Lldd~~frd 67 (141)
T PF07539_consen 14 RSDELYDALLRLLSSRDPEVQKLALDCLLTWKD----PYLTPY-KDNLENLLDDKTFRD 67 (141)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----HHHHhH-HHHHHHHcCcchHHH
Confidence 457788889999999999999999999988643 112222 234555566643443
No 317
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=77.70 E-value=32 Score=26.99 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=19.1
Q ss_pred HHhHHHHHHHhhc-CCChHHHHHHHHHhHHhhhhhc
Q 007918 354 IEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIG 388 (585)
Q Consensus 354 ~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~ 388 (585)
...++|.+...++ ...++.|.++.--++.++...+
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~ 39 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP 39 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC
Confidence 3455566665555 4455666555555555554433
No 318
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=77.16 E-value=48 Score=28.71 Aligned_cols=75 Identities=13% Similarity=0.026 Sum_probs=53.2
Q ss_pred HHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHH
Q 007918 476 PQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPC 555 (585)
Q Consensus 476 ~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~ 555 (585)
+.+.....+++.-+|..++.++...... +...+.++..+.....|+..-||.++..+|..+....+ ..+++.
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~-----~~v~~~ 179 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDP-----ERVIAF 179 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH-----HHHHHH
Confidence 6777888888866666666655554433 22457788888888888999999999999999877632 345555
Q ss_pred HHH
Q 007918 556 LVE 558 (585)
Q Consensus 556 l~~ 558 (585)
+.+
T Consensus 180 l~~ 182 (197)
T cd06561 180 LEK 182 (197)
T ss_pred HHH
Confidence 554
No 319
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=76.79 E-value=19 Score=26.23 Aligned_cols=69 Identities=14% Similarity=0.084 Sum_probs=42.0
Q ss_pred HHhcHHHHHHhh-cCCCCchHHHHHHHHHHHHHhhhchHH--HHhhHHHHHHHhcCCCCccHHHHHHHHHHH
Q 007918 509 TCSRLLPVVINA-SKDRVPNIKFNVAKVLQSLIPIVDQSM--VEKTIRPCLVELTEDPDVDVRFFATQAIQS 577 (585)
Q Consensus 509 ~~~~i~~~l~~~-l~d~~~~vR~~~~~~l~~l~~~~~~~~--~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~ 577 (585)
+...++..+... .+.++.+||...+.++.++....+..- --..++..+.....|.+.++-..|-++++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 334444444444 344577888888888888877655331 113455666666677777777777666553
No 320
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=76.75 E-value=11 Score=37.29 Aligned_cols=107 Identities=16% Similarity=0.211 Sum_probs=76.9
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHHHhhh---hcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH--
Q 007918 472 QHITPQVLEMINNPHYLYRMTILRAISLLAP---VMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-- 546 (585)
Q Consensus 472 ~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~---~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~-- 546 (585)
..+...+++.+.+|+..+.-.+...+.+..- .++..+....++..+.+++..++...|.+..+.+.++.-....+
T Consensus 430 ~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek 509 (743)
T COG5369 430 YPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK 509 (743)
T ss_pred cchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh
Confidence 4577778888999887777777766666653 34455567889999999999888899999999999876554433
Q ss_pred --HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007918 547 --MVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 578 (585)
Q Consensus 547 --~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l 578 (585)
.....=...+..+.+|+++.|+....+.+..+
T Consensus 510 f~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNf 543 (743)
T COG5369 510 FKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNF 543 (743)
T ss_pred hhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhc
Confidence 22222345566678888888887777666543
No 321
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=76.00 E-value=73 Score=30.27 Aligned_cols=80 Identities=9% Similarity=0.058 Sum_probs=56.0
Q ss_pred CChHHHHHHHHHhHHHHHhhChhh------HHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCH---H----HHH--
Q 007918 407 RHWRVRLAIIEYIPLLASQLGVGF------FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---E----WAM-- 471 (585)
Q Consensus 407 ~~~~~r~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~----~~~-- 471 (585)
..|..|......+..+.+..-... .-..++..+...+++.+.+|-..++.++..+...... + ++.
T Consensus 132 ~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y 211 (319)
T PF08767_consen 132 EYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQY 211 (319)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 457899999999988887653221 2234677788888999999999999999999886655 2 222
Q ss_pred -hhhHHHHHhhhcCcc
Q 007918 472 -QHITPQVLEMINNPH 486 (585)
Q Consensus 472 -~~ll~~l~~~l~~~~ 486 (585)
-.++..+...++|+.
T Consensus 212 ~~~il~~if~vltD~~ 227 (319)
T PF08767_consen 212 YLDILQDIFSVLTDSD 227 (319)
T ss_dssp HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHCcc
Confidence 234445555566663
No 322
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=75.92 E-value=50 Score=29.44 Aligned_cols=67 Identities=12% Similarity=0.059 Sum_probs=45.9
Q ss_pred HHHHHHHHcc-CCchHHHHHHHHHHHHHHHHhCHHHH----HhhhHHHHHhhhcCcchHHHHHHHHHHHHhh
Q 007918 435 LGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLEMINNPHYLYRMTILRAISLLA 501 (585)
Q Consensus 435 l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~ 501 (585)
+-|.+..... .+....|..++..++.+.+.-..+.. ..+++|.++..+...+...+..|...++.|.
T Consensus 125 lYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIl 196 (293)
T KOG3036|consen 125 LYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKIL 196 (293)
T ss_pred hHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 3344433333 34567888888888888887555542 2567788888787778778888888777765
No 323
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.28 E-value=30 Score=34.52 Aligned_cols=99 Identities=16% Similarity=0.170 Sum_probs=74.9
Q ss_pred HHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHH----HhhhHHH
Q 007918 402 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQ 477 (585)
Q Consensus 402 ~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~ll~~ 477 (585)
..+.+++|..-...|+.|..-- .+ ....+-.+.+.+.+.+..|...|+..|..++++.|..+. .+.+++.
T Consensus 12 ~~l~~pDWa~NleIcD~IN~~~--~~----~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~e 85 (470)
T KOG1087|consen 12 ESLAEPDWALNLEICDLINSTE--GG----PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNE 85 (470)
T ss_pred ccccCccHHHHHHHHHHHhcCc--cC----cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3567789988777776663211 11 235677788888988889999999999999999998754 4778888
Q ss_pred HHhhhcCc--chHHHHHHHHHHHHhhhhcCh
Q 007918 478 VLEMINNP--HYLYRMTILRAISLLAPVMGS 506 (585)
Q Consensus 478 l~~~l~~~--~~~~R~~a~~~l~~l~~~~~~ 506 (585)
++...... ...||..++..|..+.+.++.
T Consensus 86 mVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 86 MVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 88776554 688999999999998876554
No 324
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=74.12 E-value=84 Score=30.04 Aligned_cols=105 Identities=7% Similarity=0.056 Sum_probs=73.6
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHHhh---ChhhH---HHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHH----
Q 007918 400 IVELAEDRHWRVRLAIIEYIPLLASQL---GVGFF---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---- 469 (585)
Q Consensus 400 l~~~~~~~~~~~r~~~~~~l~~l~~~~---~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---- 469 (585)
+.+..+.++..+-..+..++..+.... ..+++ .+.+...+..++.++++-.|..+++.|+.+...-....
T Consensus 169 ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~ 248 (335)
T PF08569_consen 169 FFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTR 248 (335)
T ss_dssp HHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHH
T ss_pred HHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHH
Confidence 556677888888888888888765432 12222 23456678889999999999999999999975221111
Q ss_pred --HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhc
Q 007918 470 --AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM 504 (585)
Q Consensus 470 --~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~ 504 (585)
..+.-+..++.+++|+...+|.-|...+.-++.+-
T Consensus 249 yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 249 YISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 12456778889999999999999999998887653
No 325
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=74.01 E-value=94 Score=30.55 Aligned_cols=141 Identities=18% Similarity=0.139 Sum_probs=79.8
Q ss_pred HHHhhhhhchh--hHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCc-CccchhhHHhhhHhhcCCCChHH----H
Q 007918 89 PPLETLCTVEE--TCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDIL----K 161 (585)
Q Consensus 89 ~~l~~l~~~~~--~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~~----~ 161 (585)
+.|..++..++ ..||..+.+.|.++...-.-+.+...=+..|.++.+.. .....-..+.+++.++.+..+.. .
T Consensus 183 D~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lva 262 (832)
T KOG3678|consen 183 DLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVA 262 (832)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence 34444555554 46799999999887655444444444355555555443 23333445667777776654421 2
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhccc---chHHH-HHHHHHHhccC--hhHHHHHHHHHHHHhh
Q 007918 162 TELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTD-IMSIFEDLTQD--DSVRLLAVEGCAALGK 229 (585)
Q Consensus 162 ~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~-l~~~l~~l~~d--~~vr~~a~~~l~~l~~ 229 (585)
...++.++-.+.-.+|.+-+.++.+|++.+..-+.. .+.+. +...+--+..+ +-.|..|+-+...++.
T Consensus 263 a~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 263 AGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT 336 (832)
T ss_pred hcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence 233445555666667888888899999887654321 11222 22222222333 4478777777766654
No 326
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=73.98 E-value=4.9 Score=23.88 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=17.3
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 007918 513 LLPVVINASKDRVPNIKFNVAKVLQSLI 540 (585)
Q Consensus 513 i~~~l~~~l~d~~~~vR~~~~~~l~~l~ 540 (585)
.+|.+..+++++++.++..+++++.++.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4555666666666666666666666653
No 327
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=73.90 E-value=1.1e+02 Score=31.48 Aligned_cols=87 Identities=16% Similarity=0.222 Sum_probs=60.7
Q ss_pred HHHHHHhhhhcChHHHHhcHHHHHHhhc-CCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHH----hcCCCCccHH
Q 007918 494 LRAISLLAPVMGSEITCSRLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVE----LTEDPDVDVR 568 (585)
Q Consensus 494 ~~~l~~l~~~~~~~~~~~~i~~~l~~~l-~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~----l~~D~~~~Vr 568 (585)
+..++.+.+.+.++. ...++-.+..++ ..+...+|..++..++.+....-++.....+.|.|.. ++.|++|-+.
T Consensus 462 L~l~~~~~~~l~~~~-i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~ 540 (559)
T PF14868_consen 462 LSLLSFFIQLLDPQL-IEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLH 540 (559)
T ss_pred HHHHHHHHHhcChHH-HHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHH
Confidence 334445555555553 344555555555 4555669999999999998776665555555555554 6899999999
Q ss_pred HHHHHHHHHHHHh
Q 007918 569 FFATQAIQSIDHV 581 (585)
Q Consensus 569 ~~a~~al~~l~~~ 581 (585)
..|..|++.+++.
T Consensus 541 q~ALeAF~~FAe~ 553 (559)
T PF14868_consen 541 QHALEAFGQFAER 553 (559)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998863
No 328
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=72.21 E-value=7.4 Score=23.07 Aligned_cols=28 Identities=18% Similarity=0.064 Sum_probs=18.1
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHHHH
Q 007918 435 LGALCMQWLQDKVYSIRDAAANNLKRLA 462 (585)
Q Consensus 435 l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 462 (585)
.+|.+..++.+++.+++..++.+|..++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 3555666666667777777777776653
No 329
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=71.02 E-value=97 Score=29.45 Aligned_cols=135 Identities=15% Similarity=0.243 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHhhCH-HHHHHhhHHHHHH-hccC--------CcHHHHHHHHHHHHhhchhhCH--HHHHHhHHHH
Q 007918 293 EVRIAAAGKVTKFCRILNP-ELAIQHILPCVKE-LSSD--------SSQHVRSALASVIMGMAPLLGK--DATIEQLLPI 360 (585)
Q Consensus 293 ~vr~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~-~~~d--------~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~ 360 (585)
.+|+..++.+..+.+.... +...+.++|.+.. .+.| .++.|-......+..+...+.+ ....+.++..
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~ 121 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC 121 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3455555555555554432 1223333343332 2211 3345555444455554443322 1233444444
Q ss_pred HHHhhcC---CChHHHHHHHHHhHHhhhhh-------chhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhCh
Q 007918 361 FLSLLKD---EFPDVRLNIISKLDQVNQVI-------GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 428 (585)
Q Consensus 361 l~~~l~d---~~~~vr~~a~~~l~~l~~~~-------~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~ 428 (585)
...++++ ..|+.|..-.+-+..+.... +++.+ +.++..+.-.+++++..+...++..+..+.+.+..
T Consensus 122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f-~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQF-KLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHH-HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHH-HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 4455543 35788888777777766542 33333 45666666677888888888888888888776654
No 330
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=70.63 E-value=79 Score=28.25 Aligned_cols=71 Identities=13% Similarity=0.194 Sum_probs=53.4
Q ss_pred HHhhHHHHHHHhhcCc-CccchhhHHhhhHhhcCCCChH-----HHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHh
Q 007918 122 LVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAA 192 (585)
Q Consensus 122 ~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~-----~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~ 192 (585)
+.-++.|++.....+. .+.-|.++...|+.+...-+.+ ...+++|+.....+..+...+..|...+.++..
T Consensus 121 iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIll 197 (293)
T KOG3036|consen 121 IPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILL 197 (293)
T ss_pred ChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhh
Confidence 3446778887666665 5778999999999888776654 346788888888888888888888777777654
No 331
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=70.36 E-value=48 Score=25.67 Aligned_cols=38 Identities=11% Similarity=0.043 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHH
Q 007918 432 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 469 (585)
Q Consensus 432 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 469 (585)
...++..+.+.+.+++|.+...|+..+..++++.|..+
T Consensus 35 ~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f 72 (115)
T cd00197 35 PKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERF 72 (115)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHH
Confidence 34577778888888899999999999999998877664
No 332
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=69.95 E-value=1.5e+02 Score=31.33 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=52.6
Q ss_pred hhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhC
Q 007918 238 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 310 (585)
Q Consensus 238 ~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~ 310 (585)
..++..+..+..|.-..|+..++..+..+...-+. ....++-.+++-++|++..+...|-..|..+....+
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPE--qE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HP 373 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPE--QENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHP 373 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCC
Confidence 44566777788888889999888888776654322 234688888999999988888888787777765433
No 333
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.64 E-value=58 Score=34.68 Aligned_cols=110 Identities=13% Similarity=0.112 Sum_probs=62.7
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHH
Q 007918 436 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLP 515 (585)
Q Consensus 436 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~ 515 (585)
...+.+.+....+.-.-.+...+..+........+....+-.+.+.+.+.+...|.+.+.+.+.-.+...+-....+++.
T Consensus 26 ~~~ldkGlr~~~t~eqpeavvr~~RLFek~PfpifiNs~llrLaDaF~~Gn~llRf~V~rv~~q~g~hln~v~n~aE~lr 105 (970)
T KOG1988|consen 26 LMELDKGLRSGKTSEQPEAVVRFPRLFEKYPFPIFINSQLLRLADAFPVGNNLLRFAVLRVDQQSGKHLNKVLNGAEFLR 105 (970)
T ss_pred HHHHhhcccccccccchHHHHHHHHHHhhCCchhhhhHHHHHHHHHhccCcHHHHHHHHHHHhhccccchhhhhhhhhhh
Confidence 33444445444444444455555555544443334444444555566667777777777777665555555444455555
Q ss_pred HHHhhcCCCCchHHHHHHHHHHHHHhhhch
Q 007918 516 VVINASKDRVPNIKFNVAKVLQSLIPIVDQ 545 (585)
Q Consensus 516 ~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~ 545 (585)
.+.......+|.-|..++..++.+....+.
T Consensus 106 ri~~V~hsnDp~aRAllL~ilg~~s~lipE 135 (970)
T KOG1988|consen 106 RIFYVDHSNDPVARALLLRILGQLSALIPE 135 (970)
T ss_pred eeEEeecCCCHHHHHHHHHHHHHhhhhccc
Confidence 555556666777777777777776555443
No 334
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=69.63 E-value=1.4e+02 Score=30.88 Aligned_cols=297 Identities=11% Similarity=0.079 Sum_probs=145.0
Q ss_pred hhhHHHHHHHHHHHHHHhhcC----hh-------hHHhhHHHHHHHhhcCc-CccchhhHHhhhHhhcCCCChH----HH
Q 007918 98 EETCVRDKAVESLCRIGSQMR----ES-------DLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI----LK 161 (585)
Q Consensus 98 ~~~~vr~~a~~~l~~l~~~~~----~~-------~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~----~~ 161 (585)
.+..++.+-++.+..+..-+. .+ +....+.|...++...+ .|.+ +.-+...+.---+.+ ++
T Consensus 143 ~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K~khw~~---afPL~t~lLCvS~~e~F~~~W 219 (552)
T PF14222_consen 143 KKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSKPKHWNV---AFPLVTTLLCVSPKEFFLSNW 219 (552)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhCcchhhh---HHHHHHHHHhcCcHHHHHHHH
Confidence 567799999999888754332 11 11222444444444332 3322 222222222222222 34
Q ss_pred H-HHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhc-------ccchHHHHHHHHHHhccC--------h-hHHHHHHHHH
Q 007918 162 T-ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE-------PAHLKTDIMSIFEDLTQD--------D-SVRLLAVEGC 224 (585)
Q Consensus 162 ~-~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~-------~~~~~~~l~~~l~~l~~d--------~-~vr~~a~~~l 224 (585)
. .+++.+..-++|. ..|..+..++..+.-..- .......+-+++..+... | ..-...++.+
T Consensus 220 ~~~~i~~~~~klKdk--~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~lfp~~kk~~i~~D~~~~~~lv~ii 297 (552)
T PF14222_consen 220 LPSLIESLISKLKDK--ETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLLFPKGKKGWIPRDPEPLNPLVQII 297 (552)
T ss_pred HHHHHHHHHhhcCCh--hhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHccCCCCcccCCChhhhhhHHHHH
Confidence 4 4555555556665 788999998888765432 123445555555554432 3 3444555555
Q ss_pred HHHhhccCchhhhhhhHHHHHHhcc-----CCChHHHHHHHHHHHHHHHHhCCccccc---------------------c
Q 007918 225 AALGKLLEPQDCVAHILPVIVNFSQ-----DKSWRVRYMVANQLYELCEAVGPEPTRM---------------------D 278 (585)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~~l~~~~~-----d~~~~vR~~~~~~l~~l~~~~~~~~~~~---------------------~ 278 (585)
..++...++=...+.++|.+..-.. .-+|+--..+++++-.+.........+. .
T Consensus 298 ~~I~~~~~df~~~~iI~~LL~~~~~~s~~~~l~pERm~IgIRA~l~Il~~~e~~e~p~~p~~~~~~~~~~~~~~~~~~~~ 377 (552)
T PF14222_consen 298 RFIGYKHLDFAFRNIIFPLLNVSFNGSSLENLNPERMIIGIRAFLAILSDLEQKEKPPPPPPTSDPSGNTLRVKYTPSNE 377 (552)
T ss_pred HhHhhhCcchHHHHHHHHHHccccccccccccChhHHHHHHHHHHHHHHhhccCCCCCCCCCcCCCCCcccccccCcccc
Confidence 5555544433334556666654332 2245655667777777776654332221 0
Q ss_pred hHHHHHHhccCChHHHHHHHHHHHHHHHHhh----CHHHHHHhhHHH----------H----HHhccCCcHHHHHHHHHH
Q 007918 279 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL----NPELAIQHILPC----------V----KELSSDSSQHVRSALASV 340 (585)
Q Consensus 279 l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~----~~~~~~~~i~~~----------l----~~~~~d~~~~vr~~a~~~ 340 (585)
.++ .....++.-...-...+..++.+...+ |.......-... - .+...+..+.. .-...+
T Consensus 378 ~l~-~~~~~~~~i~~~~~~~~~~l~~il~~cD~~~G~~~~~~~~~~~~~~~t~~~~f~f~~~~d~~~~~~~~~-~Lf~t~ 455 (552)
T PF14222_consen 378 YLS-NEIAKNSGIREYYEEFCRALGKILRLCDNTFGSQLWLDEKQSSSKPKTPFSSFSFGRNDDMVTDQKPQL-DLFRTC 455 (552)
T ss_pred ccc-chhhccccHHHHHHHHHHHHHHHHHHHHHHhchhhccCcccccCCCCCCcccccccccccccccccchh-HHHHHH
Confidence 111 011111111222234445555554433 322111110000 0 01111122222 222333
Q ss_pred HHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHh
Q 007918 341 IMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA 404 (585)
Q Consensus 341 l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~ 404 (585)
+..+-..++.......++..+....-+.++.||..|..+|..++...+ . ...++..+.+++
T Consensus 456 i~aiPrcL~~~i~~~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p-~--~~~vi~~Fa~Fi 516 (552)
T PF14222_consen 456 IQAIPRCLPSSIPFKSLIELLCRGTVHVDPNIRESAAQALKRLARDKP-N--RQQVITGFARFI 516 (552)
T ss_pred HHHccccCCCCCcHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCC-C--HHHHHHHHHHHH
Confidence 333333333333456778888888888999999999999999998764 1 123444444443
No 335
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=68.86 E-value=3.7 Score=22.05 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=5.4
Q ss_pred HHHHHHHHHHhh
Q 007918 490 RMTILRAISLLA 501 (585)
Q Consensus 490 R~~a~~~l~~l~ 501 (585)
|..++.+|+.+.
T Consensus 2 R~~Aa~aLg~ig 13 (27)
T PF03130_consen 2 RRAAARALGQIG 13 (27)
T ss_dssp HHHHHHHHGGG-
T ss_pred HHHHHHHHHHcC
Confidence 444555554443
No 336
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=68.62 E-value=56 Score=25.70 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHH
Q 007918 432 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 469 (585)
Q Consensus 432 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 469 (585)
...++..+.+-+++.+..|+..++..|..++...++++
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f 73 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDF 73 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHH
Confidence 34688899999999999999999999999998765543
No 337
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=67.78 E-value=28 Score=28.22 Aligned_cols=81 Identities=16% Similarity=0.151 Sum_probs=47.2
Q ss_pred HhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhh-hHhhcCCCChHHHHH
Q 007918 85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGL-FHIAYPSAPDILKTE 163 (585)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~-l~~~~~~~~~~~~~~ 163 (585)
+.+-..+..++.++++.|+..|.+|+-..-. ..+.+ .-+.+.++..|..+ |-..... +..-.....++++..
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~----~~l~p-Y~d~L~~Lldd~~f--rdeL~~f~~~~~~~~I~~ehR~~ 88 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKD----PYLTP-YKDNLENLLDDKTF--RDELTTFNLSDESSVIEEEHRPE 88 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----HHHHh-HHHHHHHHcCcchH--HHHHHhhcccCCcCCCCHHHHhH
Confidence 4456667788899999999999999877422 12222 23445556665533 2211111 111112245678888
Q ss_pred HHHHHHhhc
Q 007918 164 LRSIYTQLC 172 (585)
Q Consensus 164 l~~~l~~l~ 172 (585)
++|++..++
T Consensus 89 l~pvvlRIL 97 (141)
T PF07539_consen 89 LMPVVLRIL 97 (141)
T ss_pred HHHHHHHHH
Confidence 888877765
No 338
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=67.74 E-value=25 Score=24.60 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhhh-cChHHHH-hcHHHHHHhhcC-CCCchHHHHHHHHHHHHHhh
Q 007918 491 MTILRAISLLAPV-MGSEITC-SRLLPVVINASK-DRVPNIKFNVAKVLQSLIPI 542 (585)
Q Consensus 491 ~~a~~~l~~l~~~-~~~~~~~-~~i~~~l~~~l~-d~~~~vR~~~~~~l~~l~~~ 542 (585)
.+++.++++++.. .|..... ..+++.+.+... ++...+|-.+..+|+.+..+
T Consensus 5 KaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 5 KAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 4556666666542 3333222 245555555543 45666666666666666554
No 339
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=66.33 E-value=1.3e+02 Score=32.00 Aligned_cols=150 Identities=18% Similarity=0.110 Sum_probs=92.0
Q ss_pred HHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhcccccccccCCchHHHHHHHHHHhccccccCCcchHHhchHH
Q 007918 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP 90 (585)
Q Consensus 11 i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 90 (585)
|..|+..+.|.|..+...+-..+.............+.++.+...... ..+...|..+ ..| +.+.++..
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s------~~~~~il~~~----~~P-~~K~~~~~ 74 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTNS------QRALEILVGV----QEP-HDKHLFDK 74 (668)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCc------HHHHHHHHhc----CCc-cHHHHHHH
Confidence 788999999999988887776555443322111223333333332111 2233444433 222 34556777
Q ss_pred HhhhhhchhhHHHHHHHHHHHHHHhhcChhhH---HhhH-HHHHHHhhcCcCccchhhHHhhhHhhcCCCCh---HHHHH
Q 007918 91 LETLCTVEETCVRDKAVESLCRIGSQMRESDL---VDWY-IPLVKRLAAGEWFTARVSACGLFHIAYPSAPD---ILKTE 163 (585)
Q Consensus 91 l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~---~~~l-~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~---~~~~~ 163 (585)
|...+.. +..|..++.-|+.++..-++... ...+ ..++.-+..|.+..+-.+|..++..+.++++. .+...
T Consensus 75 l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~ 152 (668)
T PF04388_consen 75 LNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPD 152 (668)
T ss_pred HHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHH
Confidence 7776654 56788888999988887665321 2223 33444455677777777888888888887764 47788
Q ss_pred HHHHHHhhcC
Q 007918 164 LRSIYTQLCQ 173 (585)
Q Consensus 164 l~~~l~~l~~ 173 (585)
++.++..++.
T Consensus 153 Lf~If~Rl~~ 162 (668)
T PF04388_consen 153 LFNIFGRLLS 162 (668)
T ss_pred HHHHHHHHHH
Confidence 8888888773
No 340
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=65.90 E-value=1.1e+02 Score=28.07 Aligned_cols=135 Identities=16% Similarity=0.201 Sum_probs=77.2
Q ss_pred HHHHHHHHccCCc-----hHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHH-HHHHHHHHhhhhcChHH
Q 007918 435 LGALCMQWLQDKV-----YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRM-TILRAISLLAPVMGSEI 508 (585)
Q Consensus 435 l~~~l~~~l~d~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~-~a~~~l~~l~~~~~~~~ 508 (585)
.+|.+...+.++. ..++ .++..++.+++..+... +..++..+....++-+. -.-+++..+...+.++
T Consensus 112 ~LP~ll~~~d~~~~i~~~~~~~-~~A~~La~~a~~~~~~~-----La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~- 184 (262)
T PF14225_consen 112 LLPRLLHAFDDPNPIQPDQECI-EIAEALAQVAEAQGLPN-----LARILSSYAKGRFRDKDDFLSQVVSYLREAFFPD- 184 (262)
T ss_pred HHHHHHHHhcccccccccHHHH-HHHHHHHHHHHhCCCcc-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch-
Confidence 4677777777666 3444 55577888876544332 22222222222222122 1222333344444333
Q ss_pred HHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH-HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 007918 509 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 582 (585)
Q Consensus 509 ~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~-~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~~l 582 (585)
+...++.++..++....+.+|..++..+..+.+..+-. .+...++..+.+++..+ .+.+|++-+..++
T Consensus 185 ~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~------~~~eAL~VLd~~v 253 (262)
T PF14225_consen 185 HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTD------LWMEALEVLDEIV 253 (262)
T ss_pred hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCc------cHHHHHHHHHHHH
Confidence 34567778889998899999999999999998775432 24556666666655443 3334555555443
No 341
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=65.76 E-value=44 Score=24.31 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=23.6
Q ss_pred cchHHHHHHHHHHHHhhhhcChHHH--HhcHHHHHHhhcCCCCchHHHHHHHHH
Q 007918 485 PHYLYRMTILRAISLLAPVMGSEIT--CSRLLPVVINASKDRVPNIKFNVAKVL 536 (585)
Q Consensus 485 ~~~~~R~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~l~d~~~~vR~~~~~~l 536 (585)
++..+|...+.++.++....|.... -+.++..+....+|.+..+-..+.+++
T Consensus 30 ~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 30 PSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred CcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 3455555555555555554443211 233344444444444444444444433
No 342
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.72 E-value=77 Score=31.73 Aligned_cols=101 Identities=7% Similarity=0.100 Sum_probs=73.5
Q ss_pred HHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHH----HhcHH
Q 007918 439 CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLL 514 (585)
Q Consensus 439 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~----~~~i~ 514 (585)
....+.+++|..-...+..+..- ..-....+..+.+.+++.+..+..-|+..|..++++||..+. .+.|+
T Consensus 10 T~~~l~~pDWa~NleIcD~IN~~------~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL 83 (470)
T KOG1087|consen 10 TSESLAEPDWALNLEICDLINST------EGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFL 83 (470)
T ss_pred hcccccCccHHHHHHHHHHHhcC------ccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33456778887765555444211 111235677788888888889999999999999999998753 46778
Q ss_pred HHHHhhcCCC--CchHHHHHHHHHHHHHhhhch
Q 007918 515 PVVINASKDR--VPNIKFNVAKVLQSLIPIVDQ 545 (585)
Q Consensus 515 ~~l~~~l~d~--~~~vR~~~~~~l~~l~~~~~~ 545 (585)
+-++...+.. .-.||..++..|......++.
T Consensus 84 ~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 84 NEMVKRPKNKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred HHHHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence 8777777654 678999999999988877765
No 343
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=64.98 E-value=82 Score=30.16 Aligned_cols=99 Identities=11% Similarity=0.091 Sum_probs=64.8
Q ss_pred HhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHH----hhhHHHH
Q 007918 403 LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQV 478 (585)
Q Consensus 403 ~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~----~~ll~~l 478 (585)
....++|.+-..+|+.++.-. ......+..+.+.++..++.|...|+..++.+..+.|..+.. ..+...+
T Consensus 20 ~nT~enW~~IlDvCD~v~~~~------~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el 93 (462)
T KOG2199|consen 20 KNTSENWSLILDVCDKVGSDP------DGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTEL 93 (462)
T ss_pred ccccccHHHHHHHHHhhcCCC------cccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHH
Confidence 344567876666655543221 122345677888888888888888888888888887776432 4456666
Q ss_pred HhhhcC-cchHHHHHHHHHHHHhhhhcChH
Q 007918 479 LEMINN-PHYLYRMTILRAISLLAPVMGSE 507 (585)
Q Consensus 479 ~~~l~~-~~~~~R~~a~~~l~~l~~~~~~~ 507 (585)
..++.+ ....++...-..+..+++.+..+
T Consensus 94 ~al~~~~~h~kV~~k~~~lv~eWsee~K~D 123 (462)
T KOG2199|consen 94 RALIESKAHPKVCEKMRDLVKEWSEEFKKD 123 (462)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHHhccC
Confidence 666664 34677777777777777655443
No 344
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=63.43 E-value=1.1e+02 Score=27.02 Aligned_cols=64 Identities=14% Similarity=0.224 Sum_probs=37.1
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhh
Q 007918 436 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV 503 (585)
Q Consensus 436 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~ 503 (585)
.+.+.....|++..+|.+|+-+.-.+.+.... +.+...+..++.|+.+-++.+.-.+|..+++.
T Consensus 117 ~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~~----~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~ 180 (208)
T cd07064 117 EPVMDEWSTDENFWLRRTAILHQLKYKEKTDT----DLLFEIILANLGSKEFFIRKAIGWALREYSKT 180 (208)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHccCH----HHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Confidence 45666666777777766666544333332111 23344455566677777777777777666653
No 345
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=62.55 E-value=1.8e+02 Score=29.46 Aligned_cols=83 Identities=12% Similarity=0.056 Sum_probs=55.0
Q ss_pred HHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHH
Q 007918 456 NNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKV 535 (585)
Q Consensus 456 ~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~ 535 (585)
.+|+.-.-.+|.+.-.+.++...-..+.=.+..+|...=.+++-+...-++ -.+...+.+...|.+-+|-.+++.+
T Consensus 624 a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQ----m~vfDtL~r~shd~dl~v~~ntIfa 699 (881)
T COG5110 624 ALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQ----MNVFDTLERSSHDGDLNVIINTIFA 699 (881)
T ss_pred HHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcc----hHHHHHHHHhccccchhHHHHHHHH
Confidence 333333345566655556666666666666778888777777666543222 4667778888888888888888888
Q ss_pred HHHHHhh
Q 007918 536 LQSLIPI 542 (585)
Q Consensus 536 l~~l~~~ 542 (585)
+|-+...
T Consensus 700 mGLiGAG 706 (881)
T COG5110 700 MGLIGAG 706 (881)
T ss_pred hhccccC
Confidence 8877543
No 346
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=60.68 E-value=66 Score=27.53 Aligned_cols=56 Identities=13% Similarity=0.082 Sum_probs=38.1
Q ss_pred cchHHHHHHHHHHHHhhhh-cChHHH--HhcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 007918 485 PHYLYRMTILRAISLLAPV-MGSEIT--CSRLLPVVINASKDRVPNIKFNVAKVLQSLI 540 (585)
Q Consensus 485 ~~~~~R~~a~~~l~~l~~~-~~~~~~--~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~ 540 (585)
.+...-..++.|+..++.. .|-..+ .+..+..+...+.++++.+|..++..|..++
T Consensus 128 ~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 3456667778888777652 333332 3567788888888888999999988888764
No 347
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=60.26 E-value=1.6e+02 Score=28.15 Aligned_cols=144 Identities=13% Similarity=0.094 Sum_probs=92.5
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHH---------HhhhHHHHHhhhc-Ccc---------hHHHHHHHHH
Q 007918 436 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA---------MQHITPQVLEMIN-NPH---------YLYRMTILRA 496 (585)
Q Consensus 436 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---------~~~ll~~l~~~l~-~~~---------~~~R~~a~~~ 496 (585)
+..+.+.+......+...++..|..++...|.... .-..++.+...-. +.. ..+|.+.+.+
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 66777888888888888999999999885554321 1234444443211 111 2899999999
Q ss_pred HHHhhhhcChHHH-----HhcHHHHHHhhcCCCCchHHHHHHHHHHHHH-hh--hc----hHHHHhhHHHHHHHhcCCCC
Q 007918 497 ISLLAPVMGSEIT-----CSRLLPVVINASKDRVPNIKFNVAKVLQSLI-PI--VD----QSMVEKTIRPCLVELTEDPD 564 (585)
Q Consensus 497 l~~l~~~~~~~~~-----~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~-~~--~~----~~~~~~~~~~~l~~l~~D~~ 564 (585)
+-.+....++... ...++..+.+.+.++.+++-..++.++..-+ .. ++ -..+.+..+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 9999887665432 2345777888887767776667777776532 21 11 12345567777777655555
Q ss_pred c----cHHHHHHHHHHHHH
Q 007918 565 V----DVRFFATQAIQSID 579 (585)
Q Consensus 565 ~----~Vr~~a~~al~~l~ 579 (585)
+ .++..+-+-+..++
T Consensus 218 ~~~~~~~~~~vh~fL~~lc 236 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALC 236 (330)
T ss_pred CcccchHHHHHHHHHHHHh
Confidence 5 77777777776655
No 348
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=59.96 E-value=89 Score=25.04 Aligned_cols=106 Identities=12% Similarity=0.037 Sum_probs=55.0
Q ss_pred hHHHHHhhhcCcchHHHHHHHHHHHHhhhhcCh-HHHH-hcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh---chHHH
Q 007918 474 ITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-EITC-SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV---DQSMV 548 (585)
Q Consensus 474 ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~-~~~~-~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~---~~~~~ 548 (585)
++...+..+..+|.....-++..+.+++.--.. .++. ..=+|.++..++|+...+-..++-++..+...- .+...
T Consensus 59 vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell 138 (173)
T KOG4646|consen 59 VLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELL 138 (173)
T ss_pred HHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhc
Confidence 445555556666766666666666665532211 1111 122456666677766666555555555543211 11223
Q ss_pred HhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007918 549 EKTIRPCLVELTEDPDVDVRFFATQAIQSID 579 (585)
Q Consensus 549 ~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~ 579 (585)
.+.++..+.+.......+-|.-|...++..+
T Consensus 139 ~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~~ 169 (173)
T KOG4646|consen 139 SPAVVRTVQRWRESKSHDERNLASAFLDKHV 169 (173)
T ss_pred cHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence 3445555555444445556666666666543
No 349
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=59.02 E-value=1.3e+02 Score=26.52 Aligned_cols=130 Identities=18% Similarity=0.151 Sum_probs=64.0
Q ss_pred HHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC---hh-HHHHHHHHHHHHhhccCchhhhhh
Q 007918 164 LRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD---DS-VRLLAVEGCAALGKLLEPQDCVAH 239 (585)
Q Consensus 164 l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d---~~-vr~~a~~~l~~l~~~~~~~~~~~~ 239 (585)
+..+...+.+++-.+.|..++..+.......... -++.+..++.+ +. |=..+...++.+... .+.
T Consensus 47 ~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~-----~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~------~~~ 115 (208)
T cd07064 47 LWELVLELWQQPEREYQYVAIDLLRKYKKFLTPE-----DLPLLEELITTKSWWDTVDSLAKVVGGILLAD------YPE 115 (208)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHcCCchHHHHHHHHHHHhHHHHhC------Chh
Confidence 3344444555555566666666555543322211 12333333333 22 222233333332221 122
Q ss_pred hHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHh
Q 007918 240 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI 308 (585)
Q Consensus 240 ~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~ 308 (585)
..+.+.+...|++.-+|+.++...-...+ ......+...+..++.|++.-|+++....|-.+++.
T Consensus 116 ~~~~l~~W~~s~~~W~rR~ai~~~l~~~~----~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~ 180 (208)
T cd07064 116 FEPVMDEWSTDENFWLRRTAILHQLKYKE----KTDTDLLFEIILANLGSKEFFIRKAIGWALREYSKT 180 (208)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Confidence 34556666666665555555543322222 112334566666677777777887777777777765
No 350
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=58.81 E-value=2.7e+02 Score=30.27 Aligned_cols=136 Identities=10% Similarity=0.040 Sum_probs=68.2
Q ss_pred cCCchHHHHHHHHHHhccccccCCcchHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhh---cChhhHH----hhHHHH
Q 007918 57 NDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ---MRESDLV----DWYIPL 129 (585)
Q Consensus 57 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~---~~~~~~~----~~l~~~ 129 (585)
..+++.+|...-..+..+... +.......++|-+..++-++++..|.=|...+..+... ++.+.+. +.+...
T Consensus 92 Lr~~~~l~~~F~~~f~~~~~~-~~~~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~ 170 (727)
T PF12726_consen 92 LRDDEELRELFDAIFSSLQSK-KPLKLPKELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSH 170 (727)
T ss_pred HcCcHHHHHHHHHHHHHHhcc-CCccccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHH
Confidence 344555666555554444221 10111155667777778888999999999999998764 4555443 334444
Q ss_pred HHHhhcCcCccchhhHH---hhhHhhcCCCChHHH----H-----HHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhc
Q 007918 130 VKRLAAGEWFTARVSAC---GLFHIAYPSAPDILK----T-----ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE 195 (585)
Q Consensus 130 l~~l~~~~~~~~r~~a~---~~l~~~~~~~~~~~~----~-----~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~ 195 (585)
+..+ +..++..- ... ..+..+...++.+.. . .+..++..-+.++....-....+++..+.+..+
T Consensus 171 l~~i-~~~~~~~~-~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~ 246 (727)
T PF12726_consen 171 LYRI-SPNNYNPD-SVIRFWSGFSLILRLLDKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLG 246 (727)
T ss_pred HHHh-ccCCCChh-HHHHHHHHHHHHHHHccHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCH
Confidence 4444 11111111 111 122333444444211 1 134444444444423333555677777776654
No 351
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=58.81 E-value=35 Score=23.91 Aligned_cols=54 Identities=9% Similarity=0.053 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhhh-chHHHH-hhHHHHHHHh-cCCCCccHHHHHHHHHHHHHHhh
Q 007918 529 KFNVAKVLQSLIPIV-DQSMVE-KTIRPCLVEL-TEDPDVDVRFFATQAIQSIDHVM 582 (585)
Q Consensus 529 R~~~~~~l~~l~~~~-~~~~~~-~~~~~~l~~l-~~D~~~~Vr~~a~~al~~l~~~l 582 (585)
.++++.+++++...- +-+.+. ..+++.+.++ ...+...||-.+.-+++-+++.-
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 457999999998663 333333 3588888875 56889999999999999988653
No 352
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=58.59 E-value=1.2e+02 Score=26.15 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=37.7
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchh
Q 007918 281 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 347 (585)
Q Consensus 281 ~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 347 (585)
+.+.....+++.-+|+.++..+...... +...+.++..+..+..|++..||.+...+|..++..
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 5566666666666666665555444332 111244556666666667777777777777666654
No 353
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=56.42 E-value=4.1e+02 Score=31.54 Aligned_cols=144 Identities=17% Similarity=0.176 Sum_probs=68.8
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHH-HHhc
Q 007918 434 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI-TCSR 512 (585)
Q Consensus 434 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~-~~~~ 512 (585)
.++.+...++.+++..|+..+......+...+. .+..++++..++..+.+.+..-..+|+..+..++...+... ....
T Consensus 435 siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd-s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~fa~ 513 (1426)
T PF14631_consen 435 SILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD-SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPFAT 513 (1426)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHTHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 455566666677777777777777777666653 33456666666666655555555667777777665433221 1122
Q ss_pred HHHHHHhhcCCC-CchHHHHHHHHHHHHHhhhc--hHHHHhhHHHHHHHhcCCCCccH-HHHHHHHHHHHH
Q 007918 513 LLPVVINASKDR-VPNIKFNVAKVLQSLIPIVD--QSMVEKTIRPCLVELTEDPDVDV-RFFATQAIQSID 579 (585)
Q Consensus 513 i~~~l~~~l~d~-~~~vR~~~~~~l~~l~~~~~--~~~~~~~~~~~l~~l~~D~~~~V-r~~a~~al~~l~ 579 (585)
++..+++.+.+= .+++|. +...++.+.-.-. ...+...+.-.+.+-+..++... |.....|+..+.
T Consensus 514 ~l~giLD~l~~Ls~~qiR~-lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i~ 583 (1426)
T PF14631_consen 514 FLKGILDYLDNLSLQQIRK-LFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMIK 583 (1426)
T ss_dssp HHHGGGGGGGG--HHHHHH-HHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHH-HHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHH
Confidence 333333333332 344553 3444444432211 11333444444444444344333 333333333333
No 354
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=54.71 E-value=1e+02 Score=26.40 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=34.5
Q ss_pred CchHHHHHHHHHHHHHHHH-hCHHHH--HhhhHHHHHhhhcCcchHHHHHHHHHHHHhh
Q 007918 446 KVYSIRDAAANNLKRLAEE-FGPEWA--MQHITPQVLEMINNPHYLYRMTILRAISLLA 501 (585)
Q Consensus 446 ~~~~vr~~a~~~l~~l~~~-~~~~~~--~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~ 501 (585)
.........+.++..++.. .|-+.. .+..++.+...+.+++..+|..+++.+..++
T Consensus 128 ~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 4455666667777666542 222222 2556777777788888888888888887654
No 355
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.43 E-value=84 Score=27.34 Aligned_cols=50 Identities=22% Similarity=0.224 Sum_probs=27.5
Q ss_pred HhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc---hH--HHHhhHHHHHHHh
Q 007918 510 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD---QS--MVEKTIRPCLVEL 559 (585)
Q Consensus 510 ~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~---~~--~~~~~~~~~l~~l 559 (585)
.+.++..+...+...+.+|...++++|..+....+ .. .+..+++|.+..+
T Consensus 153 LPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLVPfYRQlLp~~n~~ 207 (262)
T KOG3961|consen 153 LPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALVPFYRQLLPVLNTF 207 (262)
T ss_pred cHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhhhHHHHhhhhhhhh
Confidence 34445555555556666666666666666654322 21 3455666666554
No 356
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.73 E-value=2e+02 Score=27.22 Aligned_cols=144 Identities=11% Similarity=0.108 Sum_probs=80.8
Q ss_pred HHHHHHHccC-CchHHHHHHHHHHHHHHHHhCHHHH-----HhhhHHHHHhhh--cCcchHHHHHHHHHHHHhhhhcCh-
Q 007918 436 GALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEWA-----MQHITPQVLEMI--NNPHYLYRMTILRAISLLAPVMGS- 506 (585)
Q Consensus 436 ~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~ll~~l~~~l--~~~~~~~R~~a~~~l~~l~~~~~~- 506 (585)
+..++.++.| ....+|..+=.++..+-..-|.+.. ...-.+.+..++ ...++.+-+.++.++.-++-..+.
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdh 364 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDH 364 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcch
Confidence 4556777777 5567776655555555544454322 233445555442 233456666666666655532221
Q ss_pred --HHHHhcHHHHHHhhcC-CC-CchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007918 507 --EITCSRLLPVVINASK-DR-VPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 579 (585)
Q Consensus 507 --~~~~~~i~~~l~~~l~-d~-~~~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~ 579 (585)
..+....-...++.++ .| ...|+.+++..+-+++.....+ .+...=.+.|.+......+.++..|..|+..++
T Consensus 365 sa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 365 SAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred HHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 1122222233333333 22 5678999999999998764432 233333455555455567888999988887764
No 357
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.40 E-value=32 Score=29.74 Aligned_cols=68 Identities=12% Similarity=0.149 Sum_probs=42.2
Q ss_pred chHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhc
Q 007918 278 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMA 345 (585)
Q Consensus 278 ~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~ 345 (585)
.++|.|..-+.+-+-..|..|-+.+..+....|.. .+.++++..++..+...+.+|...+.+.+..+.
T Consensus 114 ~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv 183 (262)
T KOG3961|consen 114 PYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLV 183 (262)
T ss_pred HHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 46777777666666566666666666665554533 233555666666666777777766666666554
No 358
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=52.06 E-value=3e+02 Score=28.68 Aligned_cols=54 Identities=11% Similarity=0.078 Sum_probs=32.0
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhc-ChHHHHhcHHHHHHhhcCCCCc
Q 007918 472 QHITPQVLEMINNPHYLYRMTILRAISLLAPVM-GSEITCSRLLPVVINASKDRVP 526 (585)
Q Consensus 472 ~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~-~~~~~~~~i~~~l~~~l~d~~~ 526 (585)
..++..+....-+.+..+|..|..+|..++... ........+..++.+ +.|..+
T Consensus 470 ~~lielL~R~tvHvd~~I~~~A~~aLk~la~~~p~~~~vi~~Fa~Fif~-~~d~~~ 524 (552)
T PF14222_consen 470 KSLIELLCRGTVHVDPNIRESAAQALKRLARDKPNRQQVITGFARFIFR-FDDKYP 524 (552)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHee-CcccCc
Confidence 445555555566667777777777777777655 333344555555555 444433
No 359
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=51.85 E-value=1.4e+02 Score=24.83 Aligned_cols=110 Identities=11% Similarity=0.095 Sum_probs=62.8
Q ss_pred HHHhhhHHHHHhhhcCcc------hHHHHHHHHHHHHhhhh--cChHHHHhcHHHHHHhhcCCC--CchHHHHHHHHHHH
Q 007918 469 WAMQHITPQVLEMINNPH------YLYRMTILRAISLLAPV--MGSEITCSRLLPVVINASKDR--VPNIKFNVAKVLQS 538 (585)
Q Consensus 469 ~~~~~ll~~l~~~l~~~~------~~~R~~a~~~l~~l~~~--~~~~~~~~~i~~~l~~~l~d~--~~~vR~~~~~~l~~ 538 (585)
|....=++.+.++..+.. ...-..++.++..+.++ .+.+...+.++.-+..+.+.+ +++|-+.++..|..
T Consensus 7 FI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs 86 (160)
T PF11841_consen 7 FISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILES 86 (160)
T ss_pred HHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHH
Confidence 333333555555555443 24455677777777763 233333444444444444432 68888899999999
Q ss_pred HHhhhchH--HH-HhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007918 539 LIPIVDQS--MV-EKTIRPCLVELTEDPDVDVRFFATQAIQSI 578 (585)
Q Consensus 539 l~~~~~~~--~~-~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l 578 (585)
++...+.- .+ .+--++.|...+.+++++++.+|...+-++
T Consensus 87 ~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL 129 (160)
T PF11841_consen 87 IVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINAL 129 (160)
T ss_pred HHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88654321 11 122345555556667888777776665544
No 360
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=46.42 E-value=2.3e+02 Score=25.75 Aligned_cols=78 Identities=19% Similarity=0.207 Sum_probs=45.6
Q ss_pred HHHHHhccCCc--HHHHHHHHHHHHhhchhh--CHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhh
Q 007918 320 PCVKELSSDSS--QHVRSALASVIMGMAPLL--GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 395 (585)
Q Consensus 320 ~~l~~~~~d~~--~~vr~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 395 (585)
..+.+++.+++ ..+|.+++.++..++..- ..+...+.+...+...++.....+-...+..+..+.. ..
T Consensus 114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~--------~E 185 (249)
T PF06685_consen 114 EPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYP--------EE 185 (249)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCH--------HH
Confidence 34455566554 678999999988876543 2455566666666665665544544444444444332 35
Q ss_pred HHHHHHHHhc
Q 007918 396 LLPAIVELAE 405 (585)
Q Consensus 396 ll~~l~~~~~ 405 (585)
++|.+.+...
T Consensus 186 L~~~I~~~f~ 195 (249)
T PF06685_consen 186 LLPEIRKAFE 195 (249)
T ss_pred hHHHHHHHHH
Confidence 6666666544
No 361
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=45.70 E-value=97 Score=28.53 Aligned_cols=64 Identities=31% Similarity=0.349 Sum_probs=43.8
Q ss_pred CCCCcccHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhcccccccccCCchHHHHHHHHHHhccc
Q 007918 4 VDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFI 75 (585)
Q Consensus 4 ~~~~~~~i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~l~ 75 (585)
++|.+.-+..|+..+...|+..| .+.+.++.. .-....|+|.|.++.+ ++.+-..+.+.|-.+.
T Consensus 8 g~dcl~~LkdL~r~lr~dd~~~~-~v~r~lg~~------~iv~~DLiPiL~~~~~-~~~l~~~~l~LLV~LT 71 (266)
T PF04821_consen 8 GDDCLECLKDLKRFLRRDDEDQR-DVRRQLGEW------NIVQKDLIPILISYKD-DDKLFLACLRLLVNLT 71 (266)
T ss_pred CHhHHHHHHHHHHHHHHhCcchH-HHHHHHHHh------chhhhhHHHHHHhccC-chHHHHHHHHHHHHhC
Confidence 45566668999999999999988 555544442 2245589999988665 4555566666665553
No 362
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=45.40 E-value=2.5e+02 Score=25.82 Aligned_cols=97 Identities=14% Similarity=0.220 Sum_probs=65.3
Q ss_pred cCcchHHHHHHHHHHHHhhhh-cChHHHH---h-cHHHHHHhhcCCC---CchHHHHHHHHHHHHHhhhc----hHHHHh
Q 007918 483 NNPHYLYRMTILRAISLLAPV-MGSEITC---S-RLLPVVINASKDR---VPNIKFNVAKVLQSLIPIVD----QSMVEK 550 (585)
Q Consensus 483 ~~~~~~~R~~a~~~l~~l~~~-~~~~~~~---~-~i~~~l~~~l~d~---~~~vR~~~~~~l~~l~~~~~----~~~~~~ 550 (585)
.+.....+..+++++.++... .|...+. . .++..+....... +.++|.+++..+.++.-... +.....
T Consensus 120 ~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~ 199 (268)
T PF08324_consen 120 SSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQS 199 (268)
T ss_dssp TTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHH
T ss_pred CCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 345788899999999998764 3443332 2 4455555555554 78999999999988754432 223445
Q ss_pred hHHHHHHH-hcC-CCCccHHHHHHHHHHHHH
Q 007918 551 TIRPCLVE-LTE-DPDVDVRFFATQAIQSID 579 (585)
Q Consensus 551 ~~~~~l~~-l~~-D~~~~Vr~~a~~al~~l~ 579 (585)
.++..+.+ +.. ..|+++.+.+.-|+|.+.
T Consensus 200 ~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 200 ELLSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 56677766 333 368999998888888875
No 363
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=44.14 E-value=46 Score=23.31 Aligned_cols=34 Identities=21% Similarity=0.185 Sum_probs=29.7
Q ss_pred cccHHHHHHHhcChhHHHHHHHhhhHHHHHHhhC
Q 007918 8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALG 41 (585)
Q Consensus 8 ~~~i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~ 41 (585)
=|.|.+|+.-..|..+.+|..|++.|+.+....+
T Consensus 38 GYTi~El~~L~RSsv~~QR~~al~~L~~Il~~~~ 71 (73)
T PF08620_consen 38 GYTIQELFHLSRSSVPSQRCIALQTLGRILYRAG 71 (73)
T ss_pred CcCHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 3779999999999999999999999998876543
No 364
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=44.04 E-value=2e+02 Score=24.27 Aligned_cols=84 Identities=13% Similarity=0.147 Sum_probs=42.2
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHH--H----hhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHH
Q 007918 435 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--M----QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI 508 (585)
Q Consensus 435 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~----~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~ 508 (585)
+.|+++.++...+ ++....+.|+.+......+.+ . ..+..++.... .+.. ..|+..+..+......++
T Consensus 4 ikplLIsCL~~q~--~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~--~~e~--~kA~~IF~~L~~~l~~ef 77 (174)
T PF04510_consen 4 IKPLLISCLTMQE--TKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS--ENEP--VKAFHIFICLPMPLYGEF 77 (174)
T ss_pred hHHHHHHHHHhhc--ccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh--ccch--HHHHHHHHhCCchhhhhH
Confidence 5677777765432 334445555555543333221 1 23334443322 2222 456666666662223232
Q ss_pred ---HHhcHHHHHHhhcCCC
Q 007918 509 ---TCSRLLPVVINASKDR 524 (585)
Q Consensus 509 ---~~~~i~~~l~~~l~d~ 524 (585)
+.+.+.|.+.+.+.+|
T Consensus 78 l~~~~~~L~~~~~~~L~~p 96 (174)
T PF04510_consen 78 LIPFMENLLPEISKVLLPP 96 (174)
T ss_pred HHHHHHHHHHHHHHHcCCc
Confidence 4566777777888776
No 365
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=44.02 E-value=1.1e+02 Score=23.13 Aligned_cols=52 Identities=21% Similarity=0.225 Sum_probs=32.9
Q ss_pred HHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhH---HhhhHHHHHHHHh
Q 007918 353 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVELA 404 (585)
Q Consensus 353 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~ll~~l~~~~ 404 (585)
+.+.++.++...+.+-.++||..+...|.-+.+..+... ....+++.+..++
T Consensus 8 ~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll 62 (102)
T PF12333_consen 8 FFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLL 62 (102)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHH
Confidence 345566666677777778888888888877777766541 1134555555544
No 366
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=43.52 E-value=78 Score=23.95 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=36.3
Q ss_pred HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHH---HHhcHHHHHHhhcCCC
Q 007918 471 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI---TCSRLLPVVINASKDR 524 (585)
Q Consensus 471 ~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~l~d~ 524 (585)
.+.++.++...+++-...+|..++.++.-+.+.++... ...++++.+..++.-.
T Consensus 9 ~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 9 FPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 34556666666777778888888888888877777652 2455666666666543
No 367
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=42.61 E-value=2e+02 Score=24.06 Aligned_cols=70 Identities=11% Similarity=0.182 Sum_probs=44.8
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHH--HhhhHHHHHh-hhcCcc--hHHHHHHHHHHHHhhh
Q 007918 433 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLE-MINNPH--YLYRMTILRAISLLAP 502 (585)
Q Consensus 433 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~ll~~l~~-~l~~~~--~~~R~~a~~~l~~l~~ 502 (585)
..+.+.+.+.+..++..+-..+++.+..+...++...- .+.+++.+.. .+..++ ...|..+++++..+..
T Consensus 72 ~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 72 DDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 45666666666666677777888888888776655321 2455555554 343332 4577888888887775
No 368
>KOG3911 consensus Nucleolar protein NOP52/RRP1 [RNA processing and modification]
Probab=42.29 E-value=2.8e+02 Score=26.12 Aligned_cols=71 Identities=14% Similarity=0.206 Sum_probs=48.9
Q ss_pred HHHHHHhcChhHHHHHHHhhhHHHHHHh-hChh-hhhhhccccccc-----ccCCchHHHHHHHHHHhccccccCCcc
Q 007918 12 AVLIDELKNDDIQLRLNSIRRLSTIARA-LGEE-RTRKELIPFLSE-----NNDDDDEVLLAMAEELGVFIPYVGGVE 82 (585)
Q Consensus 12 ~~l~~~l~~~~~~~R~~a~~~l~~~~~~-~~~~-~~~~~l~~~l~~-----~~d~~~~vr~~~~~~l~~l~~~~~~~~ 82 (585)
..++.+|.+.+...|..|++.|-.-... -+.+ +...+++.+... +..+.|-++...+..|+.++..+.+.+
T Consensus 10 v~f~qkLA~ne~~tRdrAlr~Lrkyi~ak~~k~~F~~~dflklWKGLfY~MWmqDkPllQeeLa~~laqLv~~f~~~~ 87 (378)
T KOG3911|consen 10 VQFAQKLACNERKTRDRALRKLRKYISAKTQKEGFDQDDFLKLWKGLFYCMWMQDKPLLQEELADTLAQLVHIFTSTE 87 (378)
T ss_pred hHHHHHHhcCChHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHhhHHHHhhcCCchHHHHHHHHHHHHHHHhhchH
Confidence 4578899999999999999988743322 1212 333455555543 567788888889999988877665433
No 369
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.23 E-value=2.1e+02 Score=27.94 Aligned_cols=63 Identities=13% Similarity=-0.071 Sum_probs=31.2
Q ss_pred CChHHHHHHHHHhHHHHHhhChhhHHHHHHH-HHHHHccCCchHHHHHHHHHHHHHHHHhCHHH
Q 007918 407 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGA-LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 469 (585)
Q Consensus 407 ~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 469 (585)
.++..+..-..+|..+++.+..+.-...+.+ ++-.-++++..+--..|+.+|..+++..|..+
T Consensus 17 Tdp~~~eedw~ai~~fceqinkdp~gp~lAv~LlaHKiqSPqe~EAl~altvLe~cmkncGekf 80 (594)
T KOG1086|consen 17 TDPSNDEEDWKAIDGFCEQINKDPEGPLLAVRLLAHKIQSPQEWEALQALTVLEYCMKNCGEKF 80 (594)
T ss_pred cCccchHHHHHHHHHHHHHHhcCCCCchhHHHHHHhhcCChhHHHHHHHHHHHHHHHHhhhHHH
Confidence 4444555555555555555554443333322 23334455555555555555555555555443
No 370
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=41.81 E-value=3e+02 Score=25.86 Aligned_cols=69 Identities=19% Similarity=0.206 Sum_probs=46.4
Q ss_pred hcHHHHHHhhcCCCCch-HHHHHHHHHHHHHhhhchH-H--HHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007918 511 SRLLPVVINASKDRVPN-IKFNVAKVLQSLIPIVDQS-M--VEKTIRPCLVELTEDPDVDVRFFATQAIQSID 579 (585)
Q Consensus 511 ~~i~~~l~~~l~d~~~~-vR~~~~~~l~~l~~~~~~~-~--~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~ 579 (585)
-.++..+..+++..+++ .-.-|+.=+++++...+.. . ..-...+.+..+++.+|++||+.|.+|+..|-
T Consensus 355 y~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 355 YEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 35677778888777776 2233555566666555432 1 12235667777889999999999999987763
No 371
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=41.78 E-value=2.3e+02 Score=24.48 Aligned_cols=108 Identities=12% Similarity=0.003 Sum_probs=53.4
Q ss_pred HHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChh-hHHhhHHHHHHHhhcCcCcc--chhhHHhhhHhhcCCCC-hH
Q 007918 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES-DLVDWYIPLVKRLAAGEWFT--ARVSACGLFHIAYPSAP-DI 159 (585)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~l~~~~~~~--~r~~a~~~l~~~~~~~~-~~ 159 (585)
...++..+.+...++=+.||..|..++..+...-.+. ...++ .+.+.+....+... .-......+..+.+-+. +.
T Consensus 5 ~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip~-~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~~~~ 83 (193)
T PF12612_consen 5 VQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIPH-REELQDIFPSESEASLNWSSSSEYFPRLVKLLDLPE 83 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCc-HHHHHHHcccccccccccCCHHHHHHHHHHHhccHH
Confidence 3344444555556778899999999999988332221 01111 12222222222110 00111222333322222 24
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHh
Q 007918 160 LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAA 192 (585)
Q Consensus 160 ~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~ 192 (585)
++..++.-+..-....+..+.+.+..+|..+..
T Consensus 84 y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~ 116 (193)
T PF12612_consen 84 YRYSLLSGLVVSAGGLTESLVRASSAALLSYLR 116 (193)
T ss_pred HHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHH
Confidence 555666666665666666677777777776665
No 372
>PF09268 Clathrin-link: Clathrin, heavy-chain linker; InterPro: IPR015348 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the core motif for the alpha-helical zigzag linker region connecting the conserved N-terminal beta-propeller region to the C-terminal alpha-alpha-superhelical region in clathrin heavy chains []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 1C9I_A 1BPO_B 1C9L_A 1UTC_B 3GD1_I 3GC3_B 2XZG_A 2XZH_A.
Probab=41.73 E-value=29 Score=18.08 Aligned_cols=20 Identities=30% Similarity=0.678 Sum_probs=11.8
Q ss_pred hhHHHHHhhhcCcchHHHHH
Q 007918 473 HITPQVLEMINNPHYLYRMT 492 (585)
Q Consensus 473 ~ll~~l~~~l~~~~~~~R~~ 492 (585)
.++|.+.+.+++++..+|.+
T Consensus 3 ~IVpyi~~~L~N~~LAl~lA 22 (24)
T PF09268_consen 3 NIVPYILNTLQNPDLALRLA 22 (24)
T ss_dssp THHHHHHHTT--HHHHHHHH
T ss_pred cchhHHHhccCCHHHHHHHh
Confidence 46777777777776666554
No 373
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=39.55 E-value=4.5e+02 Score=29.56 Aligned_cols=102 Identities=12% Similarity=0.104 Sum_probs=52.9
Q ss_pred HHHHHhccCC--ChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCCh---------HH-----HHHHHHHHHHHH
Q 007918 242 PVIVNFSQDK--SWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE---------AE-----VRIAAAGKVTKF 305 (585)
Q Consensus 242 ~~l~~~~~d~--~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~---------~~-----vr~~a~~~l~~l 305 (585)
..|...+.|. -+++|..|+.+|...+....+=...+.++..|.....+.+ .. |+.+.-.++..+
T Consensus 677 ~~L~rtl~der~FyrIR~~Aa~aLak~a~~~~dwtG~~~Li~~F~~~fc~k~stIpKsNnF~~~q~Yfvq~~iP~a~a~l 756 (1180)
T KOG1932|consen 677 SALTRTLEDERYFYRIRIAAAFALAKTANGESDWTGPPHLIQFFRKKFCSKDSTIPKSNNFSNFQEYFVQCAIPVAFASL 756 (1180)
T ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHhhcccccccChHHHHHHHHHHhccccCCCCCcCccccHHHHHHHHhhHHHHHHh
Confidence 4455555665 4799999999998877543221223456666666543221 11 333322333332
Q ss_pred HHhhCHHHHHHhhHHHHHHhccC--------CcHHHHHHHHHHHHhhc
Q 007918 306 CRILNPELAIQHILPCVKELSSD--------SSQHVRSALASVIMGMA 345 (585)
Q Consensus 306 ~~~~~~~~~~~~i~~~l~~~~~d--------~~~~vr~~a~~~l~~l~ 345 (585)
-..-|.- .+.+.+++.++++- .+..-|.+.++.++...
T Consensus 757 R~~~g~c--p~~V~~FlLdLlkyNDNs~N~YSD~~y~a~LIesl~~~l 802 (1180)
T KOG1932|consen 757 RGREGKC--PKEVKAFLLDLLKYNDNSFNSYSDDYYRASLIESLVESL 802 (1180)
T ss_pred ccccCCC--hHHHHHHHHHHhhcccCCCCccchHHHHHHHHHHHhhhc
Confidence 2211111 14556667776641 23456777777776643
No 374
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=39.03 E-value=1.2e+02 Score=24.27 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=41.8
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHHHHHHhCH-HHHH-hhhHHHHHhhhcCcchHHHHHHHHHHHHhhh
Q 007918 435 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-EWAM-QHITPQVLEMINNPHYLYRMTILRAISLLAP 502 (585)
Q Consensus 435 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~-~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~ 502 (585)
.+..+.+.+..++..+.+.++..++.+|..-.. .++. ..=+|.++..++++...+-..++.++..+..
T Consensus 59 vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~ 128 (173)
T KOG4646|consen 59 VLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEF 128 (173)
T ss_pred HHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcC
Confidence 456666777777777777777777777642211 1111 2234556666777777777777777666543
No 375
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=37.86 E-value=6.1e+02 Score=28.21 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=11.4
Q ss_pred CCchHHHHHHHHHHHHHhhh
Q 007918 524 RVPNIKFNVAKVLQSLIPIV 543 (585)
Q Consensus 524 ~~~~vR~~~~~~l~~l~~~~ 543 (585)
++..||..+.+.+.+++...
T Consensus 485 ~~~qvr~l~~~~l~N~a~~C 504 (1697)
T KOG3687|consen 485 KDHQVRKLATQLLVNLAEGC 504 (1697)
T ss_pred chhHHHHHHHHHHHHHHhhc
Confidence 34556666666666665443
No 376
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=36.83 E-value=3.2e+02 Score=24.67 Aligned_cols=48 Identities=21% Similarity=0.349 Sum_probs=25.6
Q ss_pred hHHHHHHHhhcCCC--hHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhc
Q 007918 356 QLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE 405 (585)
Q Consensus 356 ~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~ 405 (585)
.++..+...+.+.. +.+-.+++.+|+.+++.-+ .+...+++.+..+-.
T Consensus 114 ~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP--~~~~~Il~~ll~~~~ 163 (239)
T PF11935_consen 114 GLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRP--QFMSRILPALLSFNP 163 (239)
T ss_dssp HHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSG--GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHhcCc
Confidence 45555666665553 5555666666666665322 223456666665543
No 377
>PF10304 DUF2411: Domain of unknown function (DUF2411); InterPro: IPR019414 This entry represents a 38 residue domain of unknown function that is found at the extreme C-terminal end of some HEAT repeats.
Probab=35.84 E-value=84 Score=18.38 Aligned_cols=28 Identities=25% Similarity=0.233 Sum_probs=20.5
Q ss_pred HHHHHHH-hcCCCCccHHHHHHHHHHHHH
Q 007918 552 IRPCLVE-LTEDPDVDVRFFATQAIQSID 579 (585)
Q Consensus 552 ~~~~l~~-l~~D~~~~Vr~~a~~al~~l~ 579 (585)
+.-.|.. -..|+|.-||..|..+++.+.
T Consensus 6 l~r~Lk~V~~~D~D~lvr~hA~~~Le~Le 34 (36)
T PF10304_consen 6 LYRTLKYVESTDNDDLVREHAQDALEELE 34 (36)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHh
Confidence 3334443 246889999999999998875
No 378
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=35.57 E-value=3.9e+02 Score=25.28 Aligned_cols=9 Identities=22% Similarity=0.202 Sum_probs=3.9
Q ss_pred HHHhhcCCC
Q 007918 516 VVINASKDR 524 (585)
Q Consensus 516 ~l~~~l~d~ 524 (585)
.+..+..|+
T Consensus 269 ~l~~l~~d~ 277 (322)
T cd07920 269 ALDTLMKDQ 277 (322)
T ss_pred HHHHHhCCC
Confidence 344444444
No 379
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=35.15 E-value=1.6e+02 Score=21.71 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhhhhcChHH--HHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc
Q 007918 488 LYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 544 (585)
Q Consensus 488 ~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~ 544 (585)
..|.+++..++.++..++.+. +.+.++..|....+| ...|+..+-+++.....+..
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~ 61 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQ 61 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCc
Confidence 457788888888888777653 355555556666665 56678888888887766543
No 380
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=34.48 E-value=5.2e+02 Score=26.45 Aligned_cols=248 Identities=9% Similarity=0.013 Sum_probs=120.6
Q ss_pred HHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCc--cchhhHHhhhHhhcC-CCChHH
Q 007918 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWF--TARVSACGLFHIAYP-SAPDIL 160 (585)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~--~~r~~a~~~l~~~~~-~~~~~~ 160 (585)
.+..+-+|...+++++...+.+|+-+|+........+++...+.|+. .+++. .+-..+...++.++- .++...
T Consensus 448 ~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~eevl~lL~Pi~----~std~pie~~~~asltLg~vFvGtcngD~ 523 (881)
T COG5110 448 RPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQAEEVLELLQPIM----FSTDSPIEVVFFASLTLGSVFVGTCNGDL 523 (881)
T ss_pred cchHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcHHHHHHHhhhhh----cCCCCcHHHHHHHHHhhhheEeeccCchH
Confidence 34456677778888888888888888887666555555555555544 34433 333444445555433 344444
Q ss_pred HHHHHHHHHhhc--CCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccChhHHHHHHHHHHHHhhccCchhhhh
Q 007918 161 KTELRSIYTQLC--QDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDSVRLLAVEGCAALGKLLEPQDCVA 238 (585)
Q Consensus 161 ~~~l~~~l~~l~--~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~vr~~a~~~l~~l~~~~~~~~~~~ 238 (585)
-..+++.+..-- .....++|-.+. +|+.+. .+..+..+.+...+...-.. -....+.+-..++..+... .
T Consensus 524 ts~ilqtf~Er~~~e~~tqw~RFlaL-gLa~Lf--~g~~d~~d~v~eti~aIeg~---ls~~~eiLv~~c~Y~GTGd--v 595 (881)
T COG5110 524 TSLILQTFVERGKIESETQWFRFLAL-GLASLF--YGRKDQVDDVEETIMAIEGA---LSKHEEILVKGCQYVGTGD--V 595 (881)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHH-HHHHHH--ccccchhHHHHHHHHHhcch---hhhhHHHHHhhceecccCc--H
Confidence 444444444322 334455665433 222222 22333333333322221111 0011222222222222211 1
Q ss_pred hhHHHHHHhccC---CChHHHHHHHHHHHHH---HHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHH
Q 007918 239 HILPVIVNFSQD---KSWRVRYMVANQLYEL---CEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE 312 (585)
Q Consensus 239 ~~~~~l~~~~~d---~~~~vR~~~~~~l~~l---~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~ 312 (585)
.++..+...+.. +.-.--.+.++.++.+ .-.+|.+...+..+..+-..+.=.++.+|...--+++-+...-+.
T Consensus 596 l~Iq~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQ- 674 (881)
T COG5110 596 LVIQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQ- 674 (881)
T ss_pred HHHHHHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcc-
Confidence 112222222211 1111112333333333 234566666666666666666656677887766666655432111
Q ss_pred HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchh
Q 007918 313 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 347 (585)
Q Consensus 313 ~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 347 (585)
-.++..+.+...|.+-.|-..++-+++-+...
T Consensus 675 ---m~vfDtL~r~shd~dl~v~~ntIfamGLiGAG 706 (881)
T COG5110 675 ---MNVFDTLERSSHDGDLNVIINTIFAMGLIGAG 706 (881)
T ss_pred ---hHHHHHHHHhccccchhHHHHHHHHhhccccC
Confidence 24566777777788888877777777666543
No 381
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=33.95 E-value=1.6e+02 Score=21.68 Aligned_cols=29 Identities=10% Similarity=0.123 Sum_probs=11.4
Q ss_pred HhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007918 549 EKTIRPCLVELTEDPDVDVRFFATQAIQSI 578 (585)
Q Consensus 549 ~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l 578 (585)
.+.++..|....+| ...|+..+.++++.+
T Consensus 28 ~P~~l~~La~~~~~-~~~I~~tvk~tl~eF 56 (90)
T PF11919_consen 28 MPEVLEELARHAND-PQPIRTTVKKTLSEF 56 (90)
T ss_dssp HHHHHHHHHTTSSS--SSHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CchHHHHHHHHHHHH
Confidence 33444444443333 333444444444433
No 382
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=33.88 E-value=3.4e+02 Score=24.06 Aligned_cols=81 Identities=14% Similarity=0.169 Sum_probs=53.3
Q ss_pred hHHHHHHHhhcCc-CccchhhHHhhhHhhcCCCChH-----HHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccc
Q 007918 125 WYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH 198 (585)
Q Consensus 125 ~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~-----~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~ 198 (585)
++.|++.....+. .+..|.++...++.+..+-+.. ...++.|+.+...+..+...+..++..++.+. +++.
T Consensus 145 flypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil---~dDv 221 (315)
T COG5209 145 FLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKIL---GDDV 221 (315)
T ss_pred eeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHh---ccch
Confidence 3566666554443 5778999999999998887664 34678888888888777666666666555543 2333
Q ss_pred hHHHHHHHHH
Q 007918 199 LKTDIMSIFE 208 (585)
Q Consensus 199 ~~~~l~~~l~ 208 (585)
..+++...+.
T Consensus 222 GLqYiCqT~e 231 (315)
T COG5209 222 GLQYICQTFE 231 (315)
T ss_pred hHHHHHHHHH
Confidence 4444544444
No 383
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.50 E-value=8.7e+02 Score=28.73 Aligned_cols=90 Identities=14% Similarity=0.226 Sum_probs=64.7
Q ss_pred HHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCCCccHHH
Q 007918 492 TILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRF 569 (585)
Q Consensus 492 ~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~l~~D~~~~Vr~ 569 (585)
..+-++++.....+.+ ...+...++....|..+..|..++..+..++...+.. ...++.+|.|.++++|.+..|..
T Consensus 1523 ~li~~i~~~~~a~~~d--~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~ 1600 (1621)
T KOG1837|consen 1523 LLIAEIASDSVADKDD--LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVEC 1600 (1621)
T ss_pred HHHHHHHhhccCChhh--hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHH
Confidence 3333444444333333 2333333444455678899999999999999888876 46788999999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 007918 570 FATQAIQSIDHVMM 583 (585)
Q Consensus 570 ~a~~al~~l~~~l~ 583 (585)
.+.+.+..+...++
T Consensus 1601 ~~q~li~q~e~~lG 1614 (1621)
T KOG1837|consen 1601 LCQKLIRQLEEVLG 1614 (1621)
T ss_pred HHHHHHHHHHHHhc
Confidence 99998888877765
No 384
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=32.75 E-value=1e+02 Score=23.94 Aligned_cols=33 Identities=6% Similarity=-0.050 Sum_probs=23.2
Q ss_pred HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhh
Q 007918 470 AMQHITPQVLEMINNPHYLYRMTILRAISLLAP 502 (585)
Q Consensus 470 ~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~ 502 (585)
+..=.++.+++-+.|++..++..|+..+...+.
T Consensus 5 f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~ 37 (115)
T PF14663_consen 5 FEDWGIELLVTQLYDPSPEVVAAALEILEEACE 37 (115)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 344456667777778888888888777776665
No 385
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=32.55 E-value=8.3e+02 Score=28.16 Aligned_cols=395 Identities=15% Similarity=0.091 Sum_probs=0.0
Q ss_pred hhccccccc-ccCCchHHHHHHHHHHhccccccCCcchHHhchHHHhhhhhc----------------hhhHHHHHHHHH
Q 007918 47 KELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTV----------------EETCVRDKAVES 109 (585)
Q Consensus 47 ~~l~~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~----------------~~~~vr~~a~~~ 109 (585)
++|..++.- +...+..+|.++.-+||.. .......++..|..++++ ....+|......
T Consensus 195 R~LFk~ivPlLks~~~~~r~AaVlaLG~~-----n~~v~~~LleeL~~~i~~~~~e~e~r~~~k~rr~Rrd~LR~ev~hV 269 (1120)
T PF14228_consen 195 RELFKLIVPLLKSESSSFRDAAVLALGSI-----NLNVYRTLLEELQSYIEECNSEAESRPKWKRRRRRRDRLRTEVTHV 269 (1120)
T ss_pred HHHHHHHhhhhccCcHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHHHH
Q ss_pred HHHHHhhcCh------hhHHhhHHHHHHHhhc----------CcCccchhhHHhhhHhhcC--------CCChHHHHHHH
Q 007918 110 LCRIGSQMRE------SDLVDWYIPLVKRLAA----------GEWFTARVSACGLFHIAYP--------SAPDILKTELR 165 (585)
Q Consensus 110 l~~l~~~~~~------~~~~~~l~~~l~~l~~----------~~~~~~r~~a~~~l~~~~~--------~~~~~~~~~l~ 165 (585)
+..+++.+.+ +.+...++.++..... .+.-..|...|.++..++. .++.+.+..++
T Consensus 270 l~llAe~l~p~~l~~d~~L~~~lv~fIk~~~~fL~~~~~q~~~elQ~LR~~fc~ll~~l~~~~~~~~se~fpfe~RkslF 349 (1120)
T PF14228_consen 270 LRLLAEFLKPGVLNDDWILRNNLVEFIKETKQFLEDEEVQNDWELQRLRYHFCGLLRNLAVGIVKAKSEWFPFEARKSLF 349 (1120)
T ss_pred HHHHHhhcChhhccchHHHHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHhhhchhhcCCHHHHHHHH
Q ss_pred HHHHhhcCCCc--------hHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC-hhHHHHHHHHHHHHhhccCc---
Q 007918 166 SIYTQLCQDDM--------PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD-DSVRLLAVEGCAALGKLLEP--- 233 (585)
Q Consensus 166 ~~l~~l~~d~~--------~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d-~~vr~~a~~~l~~l~~~~~~--- 233 (585)
.++..+|.... ...|+..............+......+...+. .. ...|.+|..++..++ .++
T Consensus 350 ~l~~eWCGy~~~~~~~~~~s~~rre~~r~~~~~~~r~kd~~~~~~~~~~Ie---~~~~~L~~aAl~AMAaLc--~GPif~ 424 (1120)
T PF14228_consen 350 NLFEEWCGYSPSQWGQDGRSDYRREVERYKSSQLQREKDSRERATAEMEIE---EQKRNLRTAALSAMAALC--GGPIFD 424 (1120)
T ss_pred HHHHHHhhhhcccccccchhhHHHHHHHHHHHHHhhhccchhhhHHHHHHH---HHHHHHHHHHHHHHHHHh--cCCccc
Q ss_pred ---hhhhhhhHHHHHHhccCCChHHHH----------------------------------H---HHHHHHHHHHHhCCc
Q 007918 234 ---QDCVAHILPVIVNFSQDKSWRVRY----------------------------------M---VANQLYELCEAVGPE 273 (585)
Q Consensus 234 ---~~~~~~~~~~l~~~~~d~~~~vR~----------------------------------~---~~~~l~~l~~~~~~~ 273 (585)
......++..+..++...+.+... . +-.+|..+...
T Consensus 425 ~~~~~~~grmlsWId~if~s~s~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgr~AL~nLL~~---- 500 (1120)
T PF14228_consen 425 DNASKPSGRMLSWIDSIFNSPSDRMPIGYSPLDPRTMSYSKHAGEGPRGATGRDKQKSSHARHSLGRRALKNLLEH---- 500 (1120)
T ss_pred cchhcccchHHHHHHHHHcCCCCCCcCCCCCCCccCcccccccCcccccccchhhhccchHHHHHHHHHHHHHHHh----
Q ss_pred ccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHH-HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHH
Q 007918 274 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA 352 (585)
Q Consensus 274 ~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~ 352 (585)
..+++...+..+-..++.|.......+..+....+.. .-...++....-.+.|++..+|..++..|..+-...-...
T Consensus 501 --N~dLl~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~R~~~~s 578 (1120)
T PF14228_consen 501 --NPDLLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESSEIRSKAMQLLRALEERFFSSS 578 (1120)
T ss_pred --hHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhhccc
Q ss_pred HHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhC-----
Q 007918 353 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----- 427 (585)
Q Consensus 353 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~----- 427 (585)
..+..-. +...+.+..+.+-+.+..-++.-.....++.-.+.+.......++.-+..-|...+.++--+.+.+.
T Consensus 579 ~~~~~~~-f~~si~s~l~~vYk~aQ~eLS~~LA~~hPELs~~ifSEi~~R~~~~~~~~~rr~mL~~LlPWvqnleL~~~~ 657 (1120)
T PF14228_consen 579 GSEKSGD-FRESISSKLPAVYKKAQFELSKRLAKQHPELSFPIFSEISQRFFNAVPPDARRDMLAYLLPWVQNLELVSLP 657 (1120)
T ss_pred ccccccc-eehhccCCcHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhhceecccC
Q ss_pred ----hhhHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 007918 428 ----VGFFDDKLGALCMQWLQDKVYSIRDAAANNLK 459 (585)
Q Consensus 428 ----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 459 (585)
...+...+.-+-.+. .|.-++--++...+|+
T Consensus 658 ~~g~s~~vL~nL~~iT~k~-~d~~~~Eve~lW~~L~ 692 (1120)
T PF14228_consen 658 ESGWSEMVLNNLFYITIKF-GDDHPNEVEALWIALA 692 (1120)
T ss_pred CCCcHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHh
No 386
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=32.52 E-value=2.3e+02 Score=21.76 Aligned_cols=85 Identities=14% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHH---HHhcHHHHHHhhcCCCCchH
Q 007918 452 DAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI---TCSRLLPVVINASKDRVPNI 528 (585)
Q Consensus 452 ~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~l~d~~~~v 528 (585)
...+..+..++...... ...+...+.+.+.......|..++..+..++++++... +...+.+.+.......++.+
T Consensus 18 ~~~I~~lt~~a~~~~~~--a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 95 (114)
T cd03562 18 QPSIQTLTKLAIENRKH--AKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKT 95 (114)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHH
Q ss_pred HHHHHHHHHH
Q 007918 529 KFNVAKVLQS 538 (585)
Q Consensus 529 R~~~~~~l~~ 538 (585)
|....+.+..
T Consensus 96 r~kl~rl~~i 105 (114)
T cd03562 96 RKKLERLLNI 105 (114)
T ss_pred HHHHHHHHHH
No 387
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=31.63 E-value=8.1e+02 Score=27.78 Aligned_cols=151 Identities=15% Similarity=0.187 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhhccCc-------hhhhhhhHHHHHHh-ccCCChHHHHHHHHHHHHHHHHhC--CcccccchHHHHHHh
Q 007918 217 RLLAVEGCAALGKLLEP-------QDCVAHILPVIVNF-SQDKSWRVRYMVANQLYELCEAVG--PEPTRMDLVPAYVRL 286 (585)
Q Consensus 217 r~~a~~~l~~l~~~~~~-------~~~~~~~~~~l~~~-~~d~~~~vR~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~l 286 (585)
-..++.++.++....|+ +...--.++.+... -...++++...+++.+..+...-+ ........+..+.++
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~l 1821 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTL 1821 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHH
Confidence 35677788887776663 11111123333333 335667777777777665432211 011122355566666
Q ss_pred ccCChHHHHHHHHHHHHHHHHhh--CHHHHHH-hhHHHHHHhccCCcHHHHHHHHHHHHhhch--hhCHHHH---HHhHH
Q 007918 287 LRDNEAEVRIAAAGKVTKFCRIL--NPELAIQ-HILPCVKELSSDSSQHVRSALASVIMGMAP--LLGKDAT---IEQLL 358 (585)
Q Consensus 287 l~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~-~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~--~~~~~~~---~~~l~ 358 (585)
+.. .|..|..++..|..+...- +.+.... .++..+.-++...++.+|..+++.++.+.. ..|+... +..+-
T Consensus 1822 LHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP 1900 (2235)
T KOG1789|consen 1822 LHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLP 1900 (2235)
T ss_pred Hhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhch
Confidence 655 4889999999998887531 1222212 122333344567789999999999998743 2343321 22222
Q ss_pred HHHHHhhcCC
Q 007918 359 PIFLSLLKDE 368 (585)
Q Consensus 359 ~~l~~~l~d~ 368 (585)
..+...++|.
T Consensus 1901 ~~f~d~~RD~ 1910 (2235)
T KOG1789|consen 1901 EIFADSLRDS 1910 (2235)
T ss_pred HHHHHHHhcC
Confidence 3344556664
No 388
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.08 E-value=2.6e+02 Score=26.88 Aligned_cols=61 Identities=23% Similarity=0.237 Sum_probs=25.5
Q ss_pred HHHhccCChHHHHHHHHHHHHHHHHhhC-HHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHh
Q 007918 283 YVRLLRDNEAEVRIAAAGKVTKFCRILN-PELAIQHILPCVKELSSDSSQHVRSALASVIMG 343 (585)
Q Consensus 283 l~~ll~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~ 343 (585)
++.+.++.+..-|..+...++.....-+ ...-.+.+.+.+..++.|.++.+|..++.+|.+
T Consensus 12 ~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~ 73 (364)
T COG5330 12 LIRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQ 73 (364)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHh
Confidence 3444444444444333333333332222 112223444444445555555555555554444
No 389
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=30.04 E-value=1.6e+02 Score=25.92 Aligned_cols=68 Identities=10% Similarity=0.020 Sum_probs=39.8
Q ss_pred hHHHHHhhh-cCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 007918 474 ITPQVLEMI-NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 541 (585)
Q Consensus 474 ll~~l~~~l-~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~ 541 (585)
.-|.+.... .+....+|-..--++.........+.....+++..-..++|...-||.+.-++|.++..
T Consensus 115 ~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~~~~~~if~i~E~~l~d~e~fV~KAigWaLrq~~k 183 (222)
T COG4912 115 LWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKKTLDLLEIFEIIELLLGDKEFFVQKAIGWALRQIGK 183 (222)
T ss_pred cCHHHHHHHHhccccchHHHHHHHHHHHHHHhcCccchhHHHHHHHHHccChHHHHHHHHHHHHHHHHh
Confidence 344554443 55555555555555555444455554555566666667777666777777666666665
No 390
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.48 E-value=2.4e+02 Score=27.10 Aligned_cols=66 Identities=9% Similarity=0.084 Sum_probs=42.9
Q ss_pred hHHHHHhhhcCcchHHHHHHHHHHHHhhhhcC-hHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHH
Q 007918 474 ITPQVLEMINNPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 539 (585)
Q Consensus 474 ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~-~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l 539 (585)
....++.+.++++...|.-+...++......+ ...-...+.+.+..++.|..+.+|..++.+|++.
T Consensus 8 ~~~~~i~~~~~a~~~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~~ 74 (364)
T COG5330 8 TDQDLIRLLEEASSGERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQC 74 (364)
T ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHhC
Confidence 34455566677777777666666666555444 3334566677777777777777777777777664
No 391
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=28.92 E-value=1.3e+02 Score=23.30 Aligned_cols=34 Identities=26% Similarity=0.194 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Q 007918 431 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 464 (585)
Q Consensus 431 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 464 (585)
+..-.++.+.+-+.|++.+|+..|++.|-..+..
T Consensus 5 f~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~ 38 (115)
T PF14663_consen 5 FEDWGIELLVTQLYDPSPEVVAAALEILEEACED 38 (115)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 4455688888999999999999999999888764
No 392
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=28.76 E-value=9.4e+02 Score=27.64 Aligned_cols=86 Identities=22% Similarity=0.203 Sum_probs=48.4
Q ss_pred CChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcC----CChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHc
Q 007918 368 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED----RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 443 (585)
Q Consensus 368 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~----~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l 443 (585)
++.+||..|++.++.+... .+ -..+|.+.+.++- .+.-+|...-.+ ++.-.+.-++--++.+.+
T Consensus 902 PDqeVR~~AVqwi~~ls~D----eL-~d~LPQlVQALK~E~yl~S~Lv~FLL~rs-------l~sl~~ah~lYWlLk~~l 969 (1639)
T KOG0905|consen 902 PDQEVRAHAVQWIARLSND----EL-LDYLPQLVQALKFELYLKSALVQFLLSRS-------LVSLQFAHELYWLLKDAL 969 (1639)
T ss_pred CcHHHHHHHHHHHHhcCcH----HH-HHHHHHHHHHHHHHHhccCHHHHHHHHHH-------hcchHHHHHHHHHHhhcc
Confidence 4679999999999987642 22 2456777665543 233333333222 233334445556666677
Q ss_pred cCCchHHHHHHHHHHHHHHHHhCH
Q 007918 444 QDKVYSIRDAAANNLKRLAEEFGP 467 (585)
Q Consensus 444 ~d~~~~vr~~a~~~l~~l~~~~~~ 467 (585)
.|....+|. -..++.+....|+
T Consensus 970 ~d~qfs~rY--q~ll~aLl~~~gk 991 (1639)
T KOG0905|consen 970 DDSQFSLRY--QNLLAALLDCCGK 991 (1639)
T ss_pred ccceeehHH--HHHHHHHHHHhCH
Confidence 776666666 3444444444454
No 393
>cd05392 RasGAP_Neurofibromin_like Neurofibromin-like proteins include the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2, the closest homolog of neurofibromin, which is responsible for the human autosomal dominant disease neurofibromatosis type I (NF1). The RasGAP Ira1/2 proteins are negative regulators of the Ras-cAMP signaling pathway and conserved from yeast to human. In yeast Ras proteins are activated by GEFs, and inhibited by two GAPs, Ira1 and Ira2. Ras proteins activate the cAMP/protein kinase A (PKA) pathway, which controls metabolism, stress resistance, growth, and meiosis. Recent studies showed that the kelch proteins Gpb1 and Gpb2 inhibit Ras activity via association with Ira1 and Ira2. Gpb1/2 bind to a conserved C-terminal domain of Ira1/2, and loss of Gpb1/2 results in a destabilization of Ira1 and Ira2, leading to elevated levels of Ras2-GTP and uninhibited cAMP-PKA signaling. Since the Gpb1/2 binding domain on Ira1/2 is conserved in the human neurofibromin prote
Probab=27.76 E-value=5.4e+02 Score=24.52 Aligned_cols=31 Identities=13% Similarity=0.275 Sum_probs=14.9
Q ss_pred HHHHhHHHHHhhChhhHHHHHHHHHHHHccC
Q 007918 415 IIEYIPLLASQLGVGFFDDKLGALCMQWLQD 445 (585)
Q Consensus 415 ~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d 445 (585)
+...+....+..|..++...+-|.+.....+
T Consensus 74 ~tkll~~y~r~~g~~yL~~~L~p~i~~ii~~ 104 (323)
T cd05392 74 ATRLLSAYARKKGQNYLRKTLKPLLRELVDN 104 (323)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 3444444555445555444444544444444
No 394
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=27.46 E-value=1.1e+02 Score=23.22 Aligned_cols=24 Identities=29% Similarity=0.228 Sum_probs=15.9
Q ss_pred HHHhhcCCChHHHHHHHHHhHHhh
Q 007918 361 FLSLLKDEFPDVRLNIISKLDQVN 384 (585)
Q Consensus 361 l~~~l~d~~~~vr~~a~~~l~~l~ 384 (585)
+..++.+++++||..|+..+-.+.
T Consensus 52 Ll~LL~hpn~~VRl~AA~~~L~~~ 75 (106)
T PF09450_consen 52 LLPLLKHPNMQVRLWAAAHTLRYA 75 (106)
T ss_dssp GGGGGGSS-HHHHHHHHHTTTTT-
T ss_pred HHHHHcCCChhHHHHHHHHHHHhC
Confidence 556778888888888777655544
No 395
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=27.40 E-value=4.8e+02 Score=23.84 Aligned_cols=96 Identities=16% Similarity=0.099 Sum_probs=48.7
Q ss_pred chHHHHHHHHHHHHHHHHhCHHH----HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhh-hcCh-------HHH---Hh
Q 007918 447 VYSIRDAAANNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAP-VMGS-------EIT---CS 511 (585)
Q Consensus 447 ~~~vr~~a~~~l~~l~~~~~~~~----~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~-~~~~-------~~~---~~ 511 (585)
...+|..++..+|.+.+.-..+. ...+++|.++..+..++...+..|...+..+.. ..|- +-| ..
T Consensus 109 ~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~ 188 (262)
T PF04078_consen 109 FEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAM 188 (262)
T ss_dssp HHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHH
T ss_pred cchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHH
Confidence 35577777777777776444432 125677777776666666667777777666643 1111 111 11
Q ss_pred cHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 007918 512 RLLPVVINASKDRVPNIKFNVAKVLQSLIPI 542 (585)
Q Consensus 512 ~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~ 542 (585)
-+-..+..+.+++++.+=+.++++...+...
T Consensus 189 vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 189 VLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp HHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence 1222333344555555555555555555544
No 396
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.07 E-value=8.6e+02 Score=26.64 Aligned_cols=91 Identities=14% Similarity=0.049 Sum_probs=52.0
Q ss_pred HHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHH
Q 007918 300 GKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 379 (585)
Q Consensus 300 ~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 379 (585)
..+..+-...+.+.+.+..+--+...+.+.+-..|-...+.+.+-.+...+-.....++..+.......++.-|..++..
T Consensus 46 vr~~RLFek~PfpifiNs~llrLaDaF~~Gn~llRf~V~rv~~q~g~hln~v~n~aE~lrri~~V~hsnDp~aRAllL~i 125 (970)
T KOG1988|consen 46 VRFPRLFEKYPFPIFINSQLLRLADAFPVGNNLLRFAVLRVDQQSGKHLNKVLNGAEFLRRIFYVDHSNDPVARALLLRI 125 (970)
T ss_pred HHHHHHHhhCCchhhhhHHHHHHHHHhccCcHHHHHHHHHHHhhccccchhhhhhhhhhheeEEeecCCCHHHHHHHHHH
Confidence 33444433333333333333334455566777777777777776555555444445555555555556667777777777
Q ss_pred hHHhhhhhchh
Q 007918 380 LDQVNQVIGID 390 (585)
Q Consensus 380 l~~l~~~~~~~ 390 (585)
++.+...+++.
T Consensus 126 lg~~s~lipEf 136 (970)
T KOG1988|consen 126 LGQLSALIPEF 136 (970)
T ss_pred HHHhhhhcccc
Confidence 77777666543
No 397
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=26.54 E-value=3.8e+02 Score=22.34 Aligned_cols=101 Identities=16% Similarity=0.176 Sum_probs=51.3
Q ss_pred hhhHHHHHhhh-cCcchHHHHHHHHHHHHhhhhcChHHH-HhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHH
Q 007918 472 QHITPQVLEMI-NNPHYLYRMTILRAISLLAPVMGSEIT-CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE 549 (585)
Q Consensus 472 ~~ll~~l~~~l-~~~~~~~R~~a~~~l~~l~~~~~~~~~-~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~ 549 (585)
..++..+.+.+ ...+..+ ...+.++..++...+.... ...-+..+++.+..-..++-...+.++.-+... .....
T Consensus 54 ~~Ile~l~~rI~~~s~~~~-~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~Al~PLi~~--s~~lr 130 (158)
T PF14676_consen 54 SEILEQLLNRIVTKSSSPS-SQYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAIGLLRALLPLIKF--SPSLR 130 (158)
T ss_dssp HHHHHHHHHHHHH--SS---HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHHHHHHHHTT---HHHH
T ss_pred HHHHHHHHHHHHhcCccch-hHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc--CHHHH
Confidence 44555555443 2222211 2346777777765443211 011122334444444555544555555444433 24566
Q ss_pred hhHHHHHHHhcCCCCccHHHHHHHHH
Q 007918 550 KTIRPCLVELTEDPDVDVRFFATQAI 575 (585)
Q Consensus 550 ~~~~~~l~~l~~D~~~~Vr~~a~~al 575 (585)
..++-.|.+.+-.++.+.|..|..++
T Consensus 131 d~lilvLRKamf~r~~~~R~~Av~Gf 156 (158)
T PF14676_consen 131 DSLILVLRKAMFSRELDARQMAVNGF 156 (158)
T ss_dssp HHHHHHHHHHTT-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHh
Confidence 77888888877778889999888765
No 398
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=26.27 E-value=3.2e+02 Score=21.46 Aligned_cols=37 Identities=14% Similarity=0.317 Sum_probs=26.7
Q ss_pred hhHHHHHHHHh---cCCChHHHHHHHHHhHHHHHhhChhh
Q 007918 394 QSLLPAIVELA---EDRHWRVRLAIIEYIPLLASQLGVGF 430 (585)
Q Consensus 394 ~~ll~~l~~~~---~~~~~~~r~~~~~~l~~l~~~~~~~~ 430 (585)
..++..+...+ ..++|++...++..+..+..+.+..+
T Consensus 38 ~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~ 77 (125)
T PF01417_consen 38 QEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERF 77 (125)
T ss_dssp HHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHH
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHH
Confidence 45667776666 56789999999999888888755443
No 399
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.27 E-value=1.2e+03 Score=27.73 Aligned_cols=241 Identities=12% Similarity=0.119 Sum_probs=0.0
Q ss_pred hhhhhhccccccc-ccCCchHHHHHHHHHHhccccccCCcchHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhh
Q 007918 43 ERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD 121 (585)
Q Consensus 43 ~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~ 121 (585)
.+....+.|+-.. ....+.+||..+.++...-++ .=+..++..+..-..+.+..+-+.+.+.+..+........
T Consensus 1032 ~Fq~~fl~Pfe~im~~s~s~~Irelv~rC~~~nik-----SGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~ 1106 (1514)
T KOG0929|consen 1032 RFQKDFLRPFEHIMKRSSSAEIRELVVRCISSNIK-----SGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENV 1106 (1514)
T ss_pred hHHHhhcCcchHHhhccCcchhHHHHHhhhhhhhh-----hhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhh
Q ss_pred HHhh------HHHHHHHhhcCc-CccchhhHHhhhHhhcCCCChH-------------------HHHHHHHHHHhhcCCC
Q 007918 122 LVDW------YIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI-------------------LKTELRSIYTQLCQDD 175 (585)
Q Consensus 122 ~~~~------l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~-------------------~~~~l~~~l~~l~~d~ 175 (585)
+... -++-+.++..+. .+..-..+...+-..+..+.+. .+-.++-.+...+.+.
T Consensus 1107 ~~~~~~sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~ 1186 (1514)
T KOG0929|consen 1107 FPQEMDSFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDY 1186 (1514)
T ss_pred chhhhHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhcc
Q ss_pred chHHHHHHHHhHHHHHhhhcc-------cchHHHHHHHHHHhccC-------hhHHHHHHHHHHHHhhccCc-----hhh
Q 007918 176 MPMVRRSAASNLGKFAATVEP-------AHLKTDIMSIFEDLTQD-------DSVRLLAVEGCAALGKLLEP-----QDC 236 (585)
Q Consensus 176 ~~~vr~~a~~~l~~l~~~~~~-------~~~~~~l~~~l~~l~~d-------~~vr~~a~~~l~~l~~~~~~-----~~~ 236 (585)
...||..+.+.+..+....+. +.+...++|++..+-.+ +.....+..++..++..+.. ...
T Consensus 1187 ~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~~l~~l 1266 (1514)
T KOG0929|consen 1187 RLEVRKRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFKQLNNL 1266 (1514)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcc
Q 007918 237 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLR 288 (585)
Q Consensus 237 ~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~ 288 (585)
.+.++..+..+...++..+-.....+|..+....|. +....++...+.++++
T Consensus 1267 L~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~~ 1321 (1514)
T KOG0929|consen 1267 LPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAFK 1321 (1514)
T ss_pred HHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHHH
No 400
>PHA02861 uncharacterized protein; Provisional
Probab=24.99 E-value=3.7e+02 Score=21.65 Aligned_cols=116 Identities=16% Similarity=0.063 Sum_probs=59.9
Q ss_pred ccCCchHHHHHHHHHHhccccccCCcchHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhc
Q 007918 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA 135 (585)
Q Consensus 56 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~ 135 (585)
..+.++.|+.++...+-+........+.+..+...++.+-.|.+.-.+ +-+..+.+.++.+.+.+ -..++.-+..
T Consensus 12 ~~~~~DdI~~~i~dYiyWSs~~~r~Re~AG~vf~vl~SFr~DA~~VFg----~~lr~fVk~~~~~~v~~-~~~~I~~~l~ 86 (149)
T PHA02861 12 CLNRDDDIRQIIVDYIYWSMYSYRSRSPAGKVFQVLKMFRRDSEIVFG----ENFRHIVKNFKTLGIED-TVQAVKCFTV 86 (149)
T ss_pred cCCccchHHHHHHHHHHHhhccccccCccchHHHHHHHHHhhHHHHHH----HHHHHHHHhCCccchHh-HHHHHHHHhc
Confidence 556788899999999877655444455566677777766554433222 23344555554433322 2223333333
Q ss_pred CcCccchhhHH--hhhHhhcCCCCh-----HHHHHHHHHHHhhcCCCch
Q 007918 136 GEWFTARVSAC--GLFHIAYPSAPD-----ILKTELRSIYTQLCQDDMP 177 (585)
Q Consensus 136 ~~~~~~r~~a~--~~l~~~~~~~~~-----~~~~~l~~~l~~l~~d~~~ 177 (585)
++ ...|.+++ .++...+..+|. ..--+.+.++..++.|.+-
T Consensus 87 ~e-n~irE~cAiIGL~A~~AeYWGged~Pt~~S~~vl~l~~~Llsd~d~ 134 (149)
T PHA02861 87 GK-NALRESVSMVDLCASLAEYWGGEDLPTNDSLQALKLMTILLSDDDY 134 (149)
T ss_pred cc-HHHHHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhhhccH
Confidence 33 23343322 334444444432 1334555666666666543
No 401
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.61 E-value=2.8e+02 Score=20.23 Aligned_cols=29 Identities=28% Similarity=0.497 Sum_probs=15.3
Q ss_pred HHHHHHHHHhccC----hhHHHHHHHHHHHHhh
Q 007918 201 TDIMSIFEDLTQD----DSVRLLAVEGCAALGK 229 (585)
Q Consensus 201 ~~l~~~l~~l~~d----~~vr~~a~~~l~~l~~ 229 (585)
.+...++.++.+| .++|++|-++...+..
T Consensus 16 ~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~ 48 (93)
T COG1698 16 NQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNN 48 (93)
T ss_pred HHHHHHHHHHHccccccHHHHHHHHHHHHHHhC
Confidence 3344455555555 3366666666555543
No 402
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.94 E-value=2.9e+02 Score=20.16 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=30.6
Q ss_pred hcHHHHHHhhcCCC--CchHHHHHHHHHHHHHhhh-chHHHHhhHHHHHHHhcCCCC
Q 007918 511 SRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIV-DQSMVEKTIRPCLVELTEDPD 564 (585)
Q Consensus 511 ~~i~~~l~~~l~d~--~~~vR~~~~~~l~~l~~~~-~~~~~~~~~~~~l~~l~~D~~ 564 (585)
+.++..|....+|. ..+||.++-.+...+...- .+.-.....+..|....+||+
T Consensus 16 ~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLeeisnDPN 72 (93)
T COG1698 16 NQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISNDPN 72 (93)
T ss_pred HHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCC
Confidence 44555555555554 4567777766666665422 222334456666677777765
No 403
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.77 E-value=7.6e+02 Score=24.88 Aligned_cols=353 Identities=14% Similarity=0.105 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHHhhcChhh--HHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCC---ChHHHHHHHHHHHhhcCCCc
Q 007918 102 VRDKAVESLCRIGSQMRESD--LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSA---PDILKTELRSIYTQLCQDDM 176 (585)
Q Consensus 102 vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~---~~~~~~~l~~~l~~l~~d~~ 176 (585)
.-..|..-|..+++....+. ....++..+.+...-.+...-......+-.+.-.. ..-....++.-+.++.....
T Consensus 279 LLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h 358 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQH 358 (791)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCC
Confidence 33456666667777665542 23445555554444333222222222222221111 11234556677777777778
Q ss_pred hHHHHHHHHhHHHHHhhhc--ccchHHHHHHHHHHhccChhHHHHHHHHHHHHhhccC--chhhhhhhHHHHHH-hccCC
Q 007918 177 PMVRRSAASNLGKFAATVE--PAHLKTDIMSIFEDLTQDDSVRLLAVEGCAALGKLLE--PQDCVAHILPVIVN-FSQDK 251 (585)
Q Consensus 177 ~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~l~~d~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~-~~~d~ 251 (585)
+..|......+.++.-.-+ +.-+.--++|.+..++.++....-|+..+-.+.-.-. .-.....+++.+.+ .+...
T Consensus 359 ~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~ 438 (791)
T KOG1222|consen 359 PDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGT 438 (791)
T ss_pred HHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888888877765432 1223334567777777665544444444333221000 00011223333333 34444
Q ss_pred ChHHHHHHHHHHHHHHHHhCC-ccc--ccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHh---
Q 007918 252 SWRVRYMVANQLYELCEAVGP-EPT--RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL--- 325 (585)
Q Consensus 252 ~~~vR~~~~~~l~~l~~~~~~-~~~--~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~--- 325 (585)
+.+|-...+.....++-.-.. +.. -+.+--.+...++..++-. ++.+..++.+-|+.. ..++.++-.+
T Consensus 439 ~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tq--n~FidyvgdLa~i 512 (791)
T KOG1222|consen 439 GSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQ--NMFIDYVGDLAGI 512 (791)
T ss_pred CceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHH--HHHHHHHHHHHHH
Confidence 445544444444444432111 000 0112222222233333221 112223333333221 1222222221
Q ss_pred -ccCCcHHHHHHHHHHHHhhchhh----CHHHH--HHhHHHHHHHhhcCC--ChHHHHHHHHHhHHhhhhhchhHH--hh
Q 007918 326 -SSDSSQHVRSALASVIMGMAPLL----GKDAT--IEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGIDLL--SQ 394 (585)
Q Consensus 326 -~~d~~~~vr~~a~~~l~~l~~~~----~~~~~--~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~--~~ 394 (585)
..|.++. -.++++|.++..- +-+.. ...++|.+.+.++.. ..+.....+-+++.++....-..+ ..
T Consensus 513 ~~nd~~E~---F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a 589 (791)
T KOG1222|consen 513 AKNDNSES---FGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPA 589 (791)
T ss_pred hhcCchHH---HHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCcc
Confidence 2233333 3455555554322 11111 346788888877643 234444555555555433221111 12
Q ss_pred hHHHHHHHHhcC--CChHHHHHHHHHhHHHHHhhChh-h-HH-HHHHHHHHHHccCCchHHHHHHHHHHHHHHH
Q 007918 395 SLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVG-F-FD-DKLGALCMQWLQDKVYSIRDAAANNLKRLAE 463 (585)
Q Consensus 395 ~ll~~l~~~~~~--~~~~~r~~~~~~l~~l~~~~~~~-~-~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 463 (585)
.+++.+.++++. .+-..-...+..+-.+.++-... . .. ...-..+++++.|.+.++|..-=.+|.-++.
T Consensus 590 ~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae 663 (791)
T KOG1222|consen 590 KLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAE 663 (791)
T ss_pred ccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 467777776643 23334444555555554432111 1 11 1233457888999999999877777766654
No 404
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=22.91 E-value=1e+03 Score=26.06 Aligned_cols=383 Identities=11% Similarity=0.040 Sum_probs=0.0
Q ss_pred HhhhHhhcCCCChHHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC--hhHHHHHHHH
Q 007918 146 CGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD--DSVRLLAVEG 223 (585)
Q Consensus 146 ~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d--~~vr~~a~~~ 223 (585)
|..++..++.+-+.+++-+-+++-..-+|+ +.-|+..--+.........-+.+..++..-..+=+.. ...-.-+.++
T Consensus 1 ~~s~c~cc~alR~RyKkLV~~iFPr~~e~g-pn~s~m~kL~~YAasnp~KL~KI~~yL~~R~~kdl~~~r~~~v~Iamea 79 (819)
T KOG1877|consen 1 CESMCCCCPALRPRYKKLVDNIFPRSPEDG-PNKSKMEKLTFYAASNPSKLPKIGTYLEERCYKDLRRERFGSVKIAMEA 79 (819)
T ss_pred CCceeeecHHHHHHHHHHHHHhCCCCCCCC-cccccHHHHHHHHhhChhhhhHHHHHHHHHHHHHHHhccCcchhhHHHH
Q ss_pred HHHHhhccCc--hhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCccccc----chHHHHHHhccCChHH----
Q 007918 224 CAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM----DLVPAYVRLLRDNEAE---- 293 (585)
Q Consensus 224 l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~----~l~~~l~~ll~d~~~~---- 293 (585)
+..+...+.. ..+.+.++..+.+++++..++.+..+..++..++..-++..... .+++.|.++......+
T Consensus 80 ~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he~~~~~~~~ 159 (819)
T KOG1877|consen 80 YDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHERGDDDMKD 159 (819)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhcccchhhhh
Q ss_pred -HHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHH
Q 007918 294 -VRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDV 372 (585)
Q Consensus 294 -vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v 372 (585)
+|.+.+++|..+....-.+.+...++... +.++.|....... ...+..|.......+.+.-.....|...+-
T Consensus 160 ~lr~agl~gLsa~v~~tv~d~l~~ti~e~~-----h~d~ivpsl~~~l--~~~e~~~~~~S~s~~~~~~~~~a~~~~~~p 232 (819)
T KOG1877|consen 160 CLRAAGLQGLSAVVWLTVSDHLAATIWEPQ-----HMDKIVPSLLFEL--QSIENLGKRESDSRIRTFSLLAAGDKTSDP 232 (819)
T ss_pred hccHhhhhhHHHHHHHHHhhhhhhhhhhhh-----hhccchhhHHHhh--cchhhcccccCcccccCccccccCCcccCc
Q ss_pred HHHHHHHhHHhhhhhchh-HHhhhHHHHHHHHhcCCChHHH-HHHHHHhHHHHHhh---ChhhHHHHHHHHHHHHc-cCC
Q 007918 373 RLNIISKLDQVNQVIGID-LLSQSLLPAIVELAEDRHWRVR-LAIIEYIPLLASQL---GVGFFDDKLGALCMQWL-QDK 446 (585)
Q Consensus 373 r~~a~~~l~~l~~~~~~~-~~~~~ll~~l~~~~~~~~~~~r-~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l-~d~ 446 (585)
..-+-.++.++.+.-... .+...+-|.+..+-.+.-|..- .-++..+..+.-.+ ...++...++..+.... ..+
T Consensus 233 ~vla~~cl~~l~~~A~~g~~iR~~l~pl~~~~d~h~~w~p~n~fav~~~~~vi~~iq~q~s~~v~~~li~hLd~~~~~~~ 312 (819)
T KOG1877|consen 233 KVLAERCLRELLGRAKFGTNIRNALKPLLSHLDFHELWTPPNGFAVHVFKIVIYLIQRQYSYFVIQELINHLDNKKLVAK 312 (819)
T ss_pred chhHHHHHHHhhccccccchHHHHHHHHHhccccceeecCCCccchHHHHHHHHHHhhccchHHHHHHHHHHHhhccccc
Q ss_pred chHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCc
Q 007918 447 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVP 526 (585)
Q Consensus 447 ~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~ 526 (585)
..+.+...+..-..++..-...-..-.++..+...+.....-.+...+......+...-.. ..+..+-.+.....+..|
T Consensus 313 ~~r~~~~iv~~~~~~i~~~~v~ps~l~i~n~l~rhLR~si~~s~~~~~~~~~~~~~~~~e~-~~q~~li~~~~~~~~~~P 391 (819)
T KOG1877|consen 313 KPRLGLSIVLVSIALIAATSVGPSVLIIFNDLLRHLRKSISFSDDGNIGLETDNGNYMIEA-VVQEALIQLTKKFANTLP 391 (819)
T ss_pred CccccchhHHHHHHHHHhcccchHHHHHHHHHHHHHHhhccccccccCCchhhhhHHHHHH-HHHHHHHHHHHhhcccCc
Q ss_pred hHHHHHHHHHH
Q 007918 527 NIKFNVAKVLQ 537 (585)
Q Consensus 527 ~vR~~~~~~l~ 537 (585)
.....+.....
T Consensus 392 ~~q~~~vm~~~ 402 (819)
T KOG1877|consen 392 DYQKMAVMLFI 402 (819)
T ss_pred hHHHHHHHHhh
No 405
>cd05130 RasGAP_Neurofibromin Neurofibromin is the product of the neurofibromatosis type 1 gene (NF1) and shares a region of similarity with catalytic domain of the mammalian p120RasGAP protein and an extended similarity with the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2. Neurofibromin has been shown to function as a GAP (GTPase-activating protein) which inhibits low molecular weight G proteins such as Ras by stimulating their intrinsic GTPase activity. NF1 is a common genetic disorder characterized by various symptoms ranging from predisposition for the development of tumors to learning disability or mental retardation. Loss of neurofibromin activity can be correlated to the increase in Ras-GTP concentration in neurofibromas of NF1 of patients, supporting the notion that unregulated Ras signaling may contribute to their development.
Probab=22.07 E-value=7.1e+02 Score=23.88 Aligned_cols=34 Identities=9% Similarity=0.174 Sum_probs=19.3
Q ss_pred HHHHhHHHHHhhChhhHHHHHHHHHHHHccCCch
Q 007918 415 IIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVY 448 (585)
Q Consensus 415 ~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~ 448 (585)
+...+....+..|..++.+.+-|.+.+.+.+++.
T Consensus 79 ~tKl~~~y~k~~G~~yL~~~L~pvI~~ii~~~~~ 112 (329)
T cd05130 79 ASKIMTFCFKVYGATYLQKLLEPLLREVITSPEW 112 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 4445555555556666666666666666555543
No 406
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=21.94 E-value=6.2e+02 Score=23.16 Aligned_cols=100 Identities=14% Similarity=0.112 Sum_probs=63.7
Q ss_pred HccCCchHHHHHHHHHHHHHHHHh-CHHHHH---h-hhHHHHHhhhcCc---chHHHHHHHHHHHHhhhhcC----hHHH
Q 007918 442 WLQDKVYSIRDAAANNLKRLAEEF-GPEWAM---Q-HITPQVLEMINNP---HYLYRMTILRAISLLAPVMG----SEIT 509 (585)
Q Consensus 442 ~l~d~~~~vr~~a~~~l~~l~~~~-~~~~~~---~-~ll~~l~~~l~~~---~~~~R~~a~~~l~~l~~~~~----~~~~ 509 (585)
...+.....+.-+++++.++...- |...+. . .++..+....... +..+|.++...+-+++-... ....
T Consensus 118 ~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~ 197 (268)
T PF08324_consen 118 GSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEW 197 (268)
T ss_dssp CTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCH
T ss_pred ccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence 344567788888888888876642 333222 2 3455555555544 78899999998888865322 1223
Q ss_pred HhcHHHHHHhhcC-C-CCchHHHHHHHHHHHHHh
Q 007918 510 CSRLLPVVINASK-D-RVPNIKFNVAKVLQSLIP 541 (585)
Q Consensus 510 ~~~i~~~l~~~l~-d-~~~~vR~~~~~~l~~l~~ 541 (585)
...++..+...+. . .++++...++-++|.+..
T Consensus 198 ~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~ 231 (268)
T PF08324_consen 198 QSELLSSIIEVLSREESDEEALYRLLVALGTLLS 231 (268)
T ss_dssp HHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhc
Confidence 3445666666332 2 578899999999999983
No 407
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=21.80 E-value=1.8e+02 Score=26.12 Aligned_cols=93 Identities=16% Similarity=0.107 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhhhhcChHHH----HhcHHHHHHhhc-------CCCCc--------hHHHHHHHHHHHHHhh------
Q 007918 488 LYRMTILRAISLLAPVMGSEIT----CSRLLPVVINAS-------KDRVP--------NIKFNVAKVLQSLIPI------ 542 (585)
Q Consensus 488 ~~R~~a~~~l~~l~~~~~~~~~----~~~i~~~l~~~l-------~d~~~--------~vR~~~~~~l~~l~~~------ 542 (585)
.+|+.++-.+.+++..++-..+ .-.++..++... .|+.+ .-|.-+++++.++.-.
T Consensus 81 ~lREnalV~laNisgqLdLs~~~e~I~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NVDl 160 (257)
T PF12031_consen 81 QLRENALVTLANISGQLDLSDYPESIARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNVDL 160 (257)
T ss_pred HHhhcceEeeeeeeeeeecccCchHHHHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCcce
Confidence 4566666666666654442222 222333333321 34422 3477788888887643
Q ss_pred ---hchHHHHhhHHHHHHHhcCCC-CccHHHHHHHHHHHHHH
Q 007918 543 ---VDQSMVEKTIRPCLVELTEDP-DVDVRFFATQAIQSIDH 580 (585)
Q Consensus 543 ---~~~~~~~~~~~~~l~~l~~D~-~~~Vr~~a~~al~~l~~ 580 (585)
.++....+++...|.+++.++ ++..|..|...+..++.
T Consensus 161 iLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~ 202 (257)
T PF12031_consen 161 ILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQ 202 (257)
T ss_pred eeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhc
Confidence 234456788888888866554 56678888888777653
No 408
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=21.74 E-value=4.4e+02 Score=21.39 Aligned_cols=119 Identities=17% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHH--------HH
Q 007918 439 CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--------TC 510 (585)
Q Consensus 439 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~--------~~ 510 (585)
+++-|.-....+..+|.-++.. ..++++ +.+.+++-+.+++...|.+.+.++..+++.+-... ..
T Consensus 13 ~L~~L~aS~qSi~kaa~fAlk~--~~~~ed-----L~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~~~Yv~~l 85 (139)
T PF12243_consen 13 LLRRLNASQQSIQKAAQFALKN--RDMEED-----LWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYNYPYVSML 85 (139)
T ss_pred HHHHcchhHHHHHHHHHHHHHc--cccHHH-----HHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhcccccchhHHHH
Q ss_pred hcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCC
Q 007918 511 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPD 564 (585)
Q Consensus 511 ~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~D~~ 564 (585)
..-+|.++...--++..-+.+.-.+...+........+....+..+...+..+.
T Consensus 86 ~~dL~~Iv~~V~P~~~~g~~N~~~~~kvL~~~~~k~~l~~~~~~~~~~~l~~r~ 139 (139)
T PF12243_consen 86 QRDLPRIVDAVAPPDNSGAANLKSVRKVLKNWSKKKILDPEEYEEIEASLKERE 139 (139)
T ss_pred HHHHHHHHHHhCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccC
No 409
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=21.72 E-value=1.4e+03 Score=27.32 Aligned_cols=69 Identities=19% Similarity=0.135 Sum_probs=39.2
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Q 007918 395 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 464 (585)
Q Consensus 395 ~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 464 (585)
.++.....++.+++..++.-+......+...+. .+..++++..++..+.+.+..-..+|+..|..++..
T Consensus 435 siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd-s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~ 503 (1426)
T PF14631_consen 435 SILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD-SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEK 503 (1426)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc
Confidence 344444455667777777777776666666553 234455666665555444443335677777777664
No 410
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.69 E-value=9.6e+02 Score=25.28 Aligned_cols=369 Identities=15% Similarity=0.101 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC--hhHHHHHHHHHHHHhhccCch
Q 007918 157 PDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEPQ 234 (585)
Q Consensus 157 ~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~~ 234 (585)
.++.....+.-+..++.+.++.+++.+...|..+...+-+......+...-...--+ -..+...-.+|-.
T Consensus 204 nPE~N~~~L~~l~eml~s~n~~~~Kl~~lSLlaVFKDIiP~YkIR~lte~Ek~~k~sKev~klr~yE~~Ll~-------- 275 (704)
T KOG2153|consen 204 NPEENLKKLKELFEMLDSQNPKAKKLALLSLLAVFKDIIPGYKIRPLTEKEKRTKLSKEVLKLREYEQALLK-------- 275 (704)
T ss_pred CHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhcccceecccHHHHhcccccHHHHHHHHHHHHHHH--------
Q ss_pred hhhhhhHHHHHHhccCC------ChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHh
Q 007918 235 DCVAHILPVIVNFSQDK------SWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI 308 (585)
Q Consensus 235 ~~~~~~~~~l~~~~~d~------~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~ 308 (585)
.....+..+..+..+. .-..-..|.+|+..+....+--...+.++.....+..|....++..++.++..+...
T Consensus 276 -~Yk~ylQkLe~~vK~~~~~~~~~v~l~~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~ 354 (704)
T KOG2153|consen 276 -QYKSYLQKLEQFVKDLSLRTPQQVSLAQVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFEN 354 (704)
T ss_pred -HHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcC
Q ss_pred hCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhh--------------------------------------------
Q 007918 309 LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGM-------------------------------------------- 344 (585)
Q Consensus 309 ~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l-------------------------------------------- 344 (585)
-+.....-.++..+..+++-.+..+...++..+..+
T Consensus 355 D~~g~~sl~~Vr~i~~llK~rn~~v~~~~~~~~lsLri~ed~~~k~ke~~~k~~~~k~~k~k~~~lskK~RK~kKe~~ki 434 (704)
T KOG2153|consen 355 DNGGSGSLAIVRIINSLLKTRNYEVLPDMITTFLSLRIDEDQTKKDKEDEKKQKNKKSSKKKLSSLSKKERKRKKERNKI 434 (704)
T ss_pred CCccchhHHHHHHHHHHhhhhcccchhhHHHHHHhcchhhhccchhhhccchhhhHHHHHHHHhhccHHHHHHHHHHHHH
Q ss_pred --------------chhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCC--C
Q 007918 345 --------------APLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR--H 408 (585)
Q Consensus 345 --------------~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~--~ 408 (585)
...-........++......+++.-..+-.++...+..+......+.+ ..++..+.+++.|. .
T Consensus 435 ~rE~reaea~e~aeek~k~~sEiLkiVFtiYFrILkn~~~tll~~vlEGlakf~h~invef~-~dll~vlk~ll~d~~~~ 513 (704)
T KOG2153|consen 435 EREMREAEAEESAEEKMKKQSEILKIVFTIYFRILKNDRYTLLGAVLEGLAKFAHLINVEFL-GDLLKVLKELLEDIELS 513 (704)
T ss_pred HHHhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhhHHHHhhhccHHHh-hhHHHHHHHHHHhhhHH
Q ss_pred hHHHHHHHHHhHHHHHhhC------hhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHH-----HHhhhHHH
Q 007918 409 WRVRLAIIEYIPLLASQLG------VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW-----AMQHITPQ 477 (585)
Q Consensus 409 ~~~r~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-----~~~~ll~~ 477 (585)
++-+..++..+=.+....| ..-|.+.+-..+..+-.+++.+--...+.++..+........ +.+.++.+
T Consensus 514 ~re~l~cvqtaf~IlS~qg~~lniD~~~fv~~lY~~l~~~~~~~~~~~~~~ilr~~d~~~~k~r~~v~~~~~~~~~Ll~~ 593 (704)
T KOG2153|consen 514 YREALLCVQTAFCILSGQGEKLNIDLGKFVDHLYKMLFPMNLGPDDDGFAIILRLLDPLLIKIRKPVVNVITKMERLLKC 593 (704)
T ss_pred HHHHHHHHHHHHHhhhccceeeccCHHHHHHHHHHHhcccccCCCcchHHHHHHHhhHhhhhhhhhHHHHHHHHHHHHHH
Q ss_pred HHhhhcCcc--hHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHH
Q 007918 478 VLEMINNPH--YLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKV 535 (585)
Q Consensus 478 l~~~l~~~~--~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~ 535 (585)
....+..+. ...|.....-..++...-.++......++++-.++.--.|-+|..+...
T Consensus 594 ~~h~~~~s~~~s~~~~~~fsk~~~~~~~~~pe~~s~a~~al~e~~l~ry~~~~~~~a~~~ 653 (704)
T KOG2153|consen 594 SLHVFFNSKLISKYRDIEFSKRLNLLDSETPEYCSIASLALFEKLLLRYHPISRLMASEI 653 (704)
T ss_pred HHHHhhcccchHHHHHHHhhhhhhhhhccCccccccccHHHHHHHHHhcchHHHHHHHHH
No 411
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=21.68 E-value=1e+03 Score=25.62 Aligned_cols=142 Identities=16% Similarity=0.116 Sum_probs=74.9
Q ss_pred hhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChHHHHHHHHHHHhhcC
Q 007918 94 LCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQ 173 (585)
Q Consensus 94 l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~ 173 (585)
++.+++..+.+.+...+......-...-+...++.+... ..+ ..+..++. .+.+.+-+.++..+-..+.
T Consensus 12 ~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~---t~s----~~~~~il~----~~~~P~~K~~~~~l~~~~~ 80 (668)
T PF04388_consen 12 LLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLS---TNS----QRALEILV----GVQEPHDKHLFDKLNDYFV 80 (668)
T ss_pred HhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhh---cCc----HHHHHHHH----hcCCccHHHHHHHHHHHHc
Confidence 455666666666666666555443222233333333221 111 11222222 2233334556666666665
Q ss_pred CCchHHHHHHHHhHHHHHhhhccc---chHHHHHH-HHHHhccC--hhHHHHHHHHHHHHhhccCc--hhhhhhhHHHHH
Q 007918 174 DDMPMVRRSAASNLGKFAATVEPA---HLKTDIMS-IFEDLTQD--DSVRLLAVEGCAALGKLLEP--QDCVAHILPVIV 245 (585)
Q Consensus 174 d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~-~l~~l~~d--~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~ 245 (585)
. +.-|..++..|+.++...++- .....+++ ++..+..| ..+-..|+.+|..+...++. ..+.+.++.++.
T Consensus 81 ~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~ 158 (668)
T PF04388_consen 81 K--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFG 158 (668)
T ss_pred C--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Confidence 4 457888888888888765431 11222333 33334445 34666788888888777764 345666676666
Q ss_pred Hhc
Q 007918 246 NFS 248 (585)
Q Consensus 246 ~~~ 248 (585)
.++
T Consensus 159 Rl~ 161 (668)
T PF04388_consen 159 RLL 161 (668)
T ss_pred HHH
Confidence 654
No 412
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=21.09 E-value=1.6e+02 Score=19.05 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=19.0
Q ss_pred hhhhhHHHHHHhccCCChHHHHHHHHHHHHH
Q 007918 236 CVAHILPVIVNFSQDKSWRVRYMVANQLYEL 266 (585)
Q Consensus 236 ~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l 266 (585)
+.+.+...+.+-...=++..|...+++|.-+
T Consensus 16 Fp~~L~~lL~~~~~~L~p~lR~~lv~aLiLL 46 (52)
T PF08158_consen 16 FPQELIDLLRNHHTVLDPDLRMKLVKALILL 46 (52)
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHH
Confidence 4445555555555555777777777776543
No 413
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=20.98 E-value=4.2e+02 Score=21.82 Aligned_cols=106 Identities=8% Similarity=0.067 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHH---HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcCh
Q 007918 430 FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS 506 (585)
Q Consensus 430 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~ 506 (585)
.+...-...+..++.++...-+...+..|..=..- |.+ ...-.++..+..--.....-.+..|++.++.+...+.
T Consensus 18 PL~a~Qt~~lielLk~~~~~~~~~lldLL~~RV~P-GVD~AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYN- 95 (154)
T PF11791_consen 18 PLNAEQTAELIELLKNPPAGEEAFLLDLLTNRVPP-GVDEAAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYN- 95 (154)
T ss_dssp ---HHHHHHHHHHHHS--TT-HHHHHHHHHHSS---TT-HHHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTT-
T ss_pred CCCHHHHHHHHHHHhCCCCccHHHHHHHHHhcCCC-CCChHHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCc-
Confidence 33444455566777776655444333333221111 111 1234455555544444455667777777777665333
Q ss_pred HHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc
Q 007918 507 EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 544 (585)
Q Consensus 507 ~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~ 544 (585)
+..|+.++.++++.+...++.+|.+....++
T Consensus 96 -------V~~LI~~L~~~d~~lA~~Aa~aLk~TlLvyD 126 (154)
T PF11791_consen 96 -------VQPLIDLLKSDDEELAEEAAEALKNTLLVYD 126 (154)
T ss_dssp -------HHHHHHGG--G-TTTHHHHHHHHHT--TTCC
T ss_pred -------HHHHHHHHcCCcHHHHHHHHHHHHhhHHHHh
Confidence 3667788877788888889998888776654
No 414
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=20.84 E-value=7.4e+02 Score=23.61 Aligned_cols=84 Identities=11% Similarity=0.092 Sum_probs=49.4
Q ss_pred hhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChHHHHHHHHHHHhhc
Q 007918 93 TLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLC 172 (585)
Q Consensus 93 ~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~ 172 (585)
.+...+++. -+....++..++...++++..+.+..++.+..+.++...-......+..++ +..
T Consensus 54 v~~k~~ekd-le~vlnsi~sLi~~~~~e~~e~~v~a~~ekva~q~n~~~~~l~L~vLsnLf----------------n~~ 116 (378)
T KOG2753|consen 54 VLAKIPEKD-LECVLNSIVSLIKNAPPEKVEEMVKAICEKVAKQPNDKTASLRLQVLSNLF----------------NGV 116 (378)
T ss_pred HhhcCCcch-HHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHhcCccCCCcccHHHHHHHHH----------------hcc
Confidence 344455555 366677777888888888877777777777776654322112223333333 333
Q ss_pred CCCchHHHHHHHHhHHHHHhhh
Q 007918 173 QDDMPMVRRSAASNLGKFAATV 194 (585)
Q Consensus 173 ~d~~~~vr~~a~~~l~~l~~~~ 194 (585)
..+.| +|-.....+..++...
T Consensus 117 d~~~~-aR~~Vy~~lv~la~~~ 137 (378)
T KOG2753|consen 117 DKPTP-ARYQVYMSLVTLAASC 137 (378)
T ss_pred CCCch-HHHHHHHHHHHHHhhc
Confidence 33434 7777776666666543
No 415
>PF14961 BROMI: Broad-minded protein
Probab=20.56 E-value=3.8e+02 Score=30.51 Aligned_cols=69 Identities=16% Similarity=0.078 Sum_probs=52.8
Q ss_pred HHHHHHHhhcCcCccchhhHHhhhHhhc--CCCChHHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhh
Q 007918 126 YIPLVKRLAAGEWFTARVSACGLFHIAY--PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATV 194 (585)
Q Consensus 126 l~~~l~~l~~~~~~~~r~~a~~~l~~~~--~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~ 194 (585)
+.-++.++-.++...+|..|...++.+- .-++.+.+..+..-+...+.|+++.+...+.+...+..+.-
T Consensus 163 lq~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssS 233 (1296)
T PF14961_consen 163 LQLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSS 233 (1296)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC
Confidence 4334445555566789999998887653 23455789999999999999999999999999888877654
No 416
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=20.45 E-value=5.1e+02 Score=21.62 Aligned_cols=71 Identities=15% Similarity=0.127 Sum_probs=44.4
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHH--HHhcHHHHHHh-hcCCCC--chHHHHHHHHHHHHHhh
Q 007918 472 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVIN-ASKDRV--PNIKFNVAKVLQSLIPI 542 (585)
Q Consensus 472 ~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~-~l~d~~--~~vR~~~~~~l~~l~~~ 542 (585)
+.+.+.+.....+++..+=..++..+..+...++... -.+.+++.+.. .+..+. ...|..+++++..++..
T Consensus 72 ~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 72 DDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 4566677766655667777778888887776655432 13445555444 444332 46788888888888753
No 417
>PF14123 DUF4290: Domain of unknown function (DUF4290)
Probab=20.32 E-value=5.4e+02 Score=21.83 Aligned_cols=113 Identities=9% Similarity=0.050 Sum_probs=67.5
Q ss_pred cchHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChh-----hHHhhHHHHHH---Hhh---cCcCccchhhHHhhh
Q 007918 81 VEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES-----DLVDWYIPLVK---RLA---AGEWFTARVSACGLF 149 (585)
Q Consensus 81 ~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~l~~~l~---~l~---~~~~~~~r~~a~~~l 149 (585)
|+|...+-..+...++-++..-|..++.++..+...+.|. ++...+=..+. .+. ..+.+.........=
T Consensus 13 pEYGR~IQ~MVd~~~tieDreeR~~~A~~II~iM~~l~P~lRd~~Df~hKLWDhL~ImS~FkLDVD~Py~ip~~e~l~~k 92 (176)
T PF14123_consen 13 PEYGRNIQKMVDYAVTIEDREERNRCAETIIEIMGNLNPHLRDVPDFKHKLWDHLFIMSDFKLDVDSPYPIPSKEKLGKK 92 (176)
T ss_pred chhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCCccCCChhHHHHHHHHHHHHhCCCccCCCCCCCCCHHHhccC
Confidence 5677777788888888899999999999999999988762 22221211111 111 112222221111110
Q ss_pred HhhcCCC--Ch---HHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhh
Q 007918 150 HIAYPSA--PD---ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAAT 193 (585)
Q Consensus 150 ~~~~~~~--~~---~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~ 193 (585)
+.-.+.. .. .+-+.+..++..+..-++.+.|.+....+++.++.
T Consensus 93 P~~l~Yp~~~i~yRhYG~~i~~mi~ka~~~e~geer~~lv~~iAn~MK~ 141 (176)
T PF14123_consen 93 PEPLPYPQNRIKYRHYGKNIEEMIDKAKEMEDGEERDALVRLIANHMKK 141 (176)
T ss_pred CCCCCCCCCCCCcccccHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 1111111 01 13466777777888888899999999998888764
Done!