Query 007918
Match_columns 585
No_of_seqs 270 out of 2204
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 13:43:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007918.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007918hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 100.0 1.7E-62 5.7E-67 512.0 59.1 578 3-580 4-587 (588)
2 1b3u_A Protein (protein phosph 100.0 3.9E-48 1.3E-52 403.6 47.9 529 52-582 15-550 (588)
3 4fdd_A Transportin-1; heat rep 100.0 2.5E-35 8.4E-40 318.8 52.1 525 56-583 99-702 (852)
4 4fdd_A Transportin-1; heat rep 100.0 1.5E-35 5.3E-40 320.4 46.7 567 12-581 93-743 (852)
5 1u6g_C TIP120 protein, CAND1; 100.0 2.8E-35 9.6E-40 330.7 47.0 570 9-582 6-681 (1230)
6 2bpt_A Importin beta-1 subunit 100.0 6.4E-34 2.2E-38 309.9 52.2 570 11-582 136-813 (861)
7 2bpt_A Importin beta-1 subunit 100.0 6.7E-34 2.3E-38 309.8 49.7 570 12-583 98-766 (861)
8 1u6g_C TIP120 protein, CAND1; 100.0 3.3E-34 1.1E-38 322.1 45.9 567 11-580 50-721 (1230)
9 1qgr_A Protein (importin beta 100.0 1.1E-31 3.8E-36 292.8 54.1 573 11-585 130-876 (876)
10 1qgr_A Protein (importin beta 100.0 2.9E-32 9.9E-37 297.4 44.1 568 13-583 94-830 (876)
11 2vgl_B AP-2 complex subunit be 99.9 1.4E-23 4.8E-28 215.8 37.6 502 10-539 14-530 (591)
12 1ibr_B P95, importin beta-1 su 99.9 8.2E-23 2.8E-27 205.8 38.6 384 172-558 10-458 (462)
13 1ibr_B P95, importin beta-1 su 99.9 1.6E-22 5.4E-27 203.7 29.9 375 11-389 3-441 (462)
14 1jdh_A Beta-catenin; beta-cate 99.9 4.7E-22 1.6E-26 203.8 33.1 474 71-578 2-528 (529)
15 3now_A UNC-45 protein, SD10334 99.9 7E-20 2.4E-24 188.5 48.0 569 11-580 51-737 (810)
16 2z6g_A B-catenin; FULL-length, 99.9 1.3E-21 4.3E-26 207.2 34.8 512 11-544 117-666 (780)
17 2z6g_A B-catenin; FULL-length, 99.9 3.8E-21 1.3E-25 203.5 38.2 486 91-580 120-663 (780)
18 2vgl_B AP-2 complex subunit be 99.9 2.7E-21 9.4E-26 198.8 34.6 466 11-502 51-532 (591)
19 3now_A UNC-45 protein, SD10334 99.9 1.4E-20 4.9E-25 193.6 38.3 570 10-581 93-783 (810)
20 1wa5_B Importin alpha subunit; 99.9 6.8E-21 2.3E-25 194.5 35.2 341 238-579 129-509 (530)
21 2z6h_A Catenin beta-1, beta-ca 99.9 2.3E-20 7.8E-25 194.8 37.6 490 74-563 2-549 (644)
22 2jdq_A Importin alpha-1 subuni 99.9 7.5E-21 2.6E-25 190.7 31.7 341 239-579 64-442 (450)
23 2z6h_A Catenin beta-1, beta-ca 99.9 5.6E-20 1.9E-24 191.9 37.9 459 122-580 11-527 (644)
24 2jdq_A Importin alpha-1 subuni 99.9 2.9E-20 1E-24 186.3 32.9 338 88-425 22-391 (450)
25 1jdh_A Beta-catenin; beta-cate 99.9 1E-19 3.5E-24 186.5 32.3 425 98-539 72-528 (529)
26 4b8j_A Importin subunit alpha- 99.9 3.4E-19 1.2E-23 182.0 34.2 365 214-579 88-495 (528)
27 1w63_A Adapter-related protein 99.9 4.1E-19 1.4E-23 183.1 34.1 462 56-541 79-577 (618)
28 1w63_A Adapter-related protein 99.9 1.3E-18 4.3E-23 179.5 37.7 529 9-580 10-577 (618)
29 1wa5_B Importin alpha subunit; 99.9 3.4E-19 1.2E-23 181.9 32.6 303 163-465 130-459 (530)
30 4b8j_A Importin subunit alpha- 99.9 8.1E-19 2.8E-23 179.2 33.9 378 165-542 76-497 (528)
31 2vgl_A Adaptor protein complex 99.8 1.5E-16 5E-21 163.4 36.1 463 56-539 83-587 (621)
32 3ul1_B Importin subunit alpha- 99.8 1.1E-16 3.7E-21 161.7 32.6 339 240-578 101-476 (510)
33 3tpo_A Importin subunit alpha- 99.8 2.6E-16 8.9E-21 159.9 33.6 340 239-578 119-495 (529)
34 2vgl_A Adaptor protein complex 99.8 4.6E-16 1.6E-20 159.6 34.6 538 5-579 7-588 (621)
35 1oyz_A Hypothetical protein YI 99.8 4.1E-17 1.4E-21 151.7 22.9 254 279-577 24-279 (280)
36 1oyz_A Hypothetical protein YI 99.8 4.9E-17 1.7E-21 151.2 22.2 254 239-537 23-278 (280)
37 1wa5_C Importin alpha RE-expor 99.8 5.5E-15 1.9E-19 161.4 39.5 327 253-581 260-671 (960)
38 1wa5_C Importin alpha RE-expor 99.8 1.2E-14 4.1E-19 158.7 41.3 521 11-540 7-669 (960)
39 3ul1_B Importin subunit alpha- 99.7 1.8E-15 6.1E-20 152.8 31.7 374 88-461 59-476 (510)
40 2x1g_F Cadmus; transport prote 99.7 2.5E-14 8.4E-19 157.0 43.2 560 11-578 124-856 (971)
41 3tpo_A Importin subunit alpha- 99.7 2.6E-15 9E-20 152.5 32.4 375 87-461 77-495 (529)
42 2x1g_F Cadmus; transport prote 99.7 1.2E-14 3.9E-19 159.6 35.6 480 97-583 51-666 (971)
43 2x19_B Importin-13; nuclear tr 99.7 8.7E-13 3E-17 144.9 49.7 564 7-582 22-716 (963)
44 2x19_B Importin-13; nuclear tr 99.7 3.8E-13 1.3E-17 147.7 42.0 520 49-582 26-651 (963)
45 2qk2_A LP04448P; mini spindles 99.7 2.6E-15 8.7E-20 135.9 20.6 186 279-469 16-211 (242)
46 2qk2_A LP04448P; mini spindles 99.7 3.2E-15 1.1E-19 135.3 20.5 196 232-431 8-212 (242)
47 3ltj_A Alpharep-4; protein eng 99.7 6.3E-15 2.1E-19 129.4 19.0 188 355-582 13-200 (201)
48 3m1i_C Exportin-1; heat repeat 99.7 2E-12 6.9E-17 142.4 43.1 339 203-544 195-621 (1049)
49 3ltm_A Alpha-REP4; protein eng 99.6 1.4E-14 4.9E-19 128.2 20.3 186 239-464 19-204 (211)
50 3ltm_A Alpha-REP4; protein eng 99.6 8.3E-15 2.9E-19 129.7 17.6 183 357-579 20-202 (211)
51 3ltj_A Alpharep-4; protein eng 99.6 3.3E-14 1.1E-18 124.8 20.3 183 239-461 14-196 (201)
52 3opb_A SWI5-dependent HO expre 99.6 4.8E-12 1.6E-16 128.0 36.4 479 96-582 180-730 (778)
53 4ady_A RPN2, 26S proteasome re 99.6 5E-11 1.7E-15 123.2 43.4 299 250-579 406-718 (963)
54 3m1i_C Exportin-1; heat repeat 99.6 1.9E-11 6.4E-16 134.7 41.9 488 9-505 16-621 (1049)
55 3l6x_A Catenin delta-1; cateni 99.6 3.5E-12 1.2E-16 127.1 32.2 345 235-579 44-475 (584)
56 3ibv_A Exportin-T; karyopherin 99.6 7.3E-11 2.5E-15 127.1 44.1 521 22-546 56-735 (980)
57 3opb_A SWI5-dependent HO expre 99.6 3.5E-11 1.2E-15 121.8 38.4 539 11-561 134-757 (778)
58 4hxt_A De novo protein OR329; 99.6 8.1E-13 2.8E-17 120.7 24.2 224 358-581 4-242 (252)
59 1xm9_A Plakophilin 1; armadill 99.6 1.2E-12 4.3E-17 129.8 26.8 338 241-579 4-448 (457)
60 4hat_C Exportin-1; heat repeat 99.6 8.9E-11 3E-15 126.5 42.1 342 202-546 194-623 (1023)
61 3ibv_A Exportin-T; karyopherin 99.5 2.3E-10 7.7E-15 123.3 42.9 557 22-583 21-733 (980)
62 4hat_C Exportin-1; heat repeat 99.5 5.4E-10 1.8E-14 120.5 45.1 491 10-508 17-624 (1023)
63 4db8_A Armadillo-repeat protei 99.5 5.6E-13 1.9E-17 121.7 19.1 223 358-580 14-251 (252)
64 4hxt_A De novo protein OR329; 99.5 2.6E-12 9E-17 117.3 23.0 188 357-544 45-244 (252)
65 2qk1_A Protein STU2; STU2P, XM 99.5 5.9E-13 2E-17 119.6 18.1 192 201-392 15-227 (249)
66 4db8_A Armadillo-repeat protei 99.5 1.8E-12 6E-17 118.4 21.1 224 278-501 12-250 (252)
67 2qk1_A Protein STU2; STU2P, XM 99.5 9.7E-13 3.3E-17 118.2 18.8 194 238-431 15-227 (249)
68 3l6x_A Catenin delta-1; cateni 99.5 8.6E-11 3E-15 117.2 31.1 303 240-542 91-477 (584)
69 4ady_A RPN2, 26S proteasome re 99.5 3.6E-10 1.2E-14 116.9 35.3 332 175-540 370-718 (963)
70 1xm9_A Plakophilin 1; armadill 99.4 3.4E-11 1.1E-15 119.5 26.3 303 240-542 45-450 (457)
71 3nmz_A APC variant protein; pr 99.4 2.9E-10 1E-14 110.8 29.8 245 297-543 167-452 (458)
72 3nmz_A APC variant protein; pr 99.4 1.7E-10 5.6E-15 112.5 26.5 245 336-580 167-450 (458)
73 4db6_A Armadillo repeat protei 99.4 2.5E-11 8.4E-16 107.3 19.0 187 394-580 11-209 (210)
74 2iw3_A Elongation factor 3A; a 99.4 1.1E-10 3.7E-15 122.4 24.7 284 294-583 30-327 (986)
75 3gjx_A Exportin-1; transport, 99.3 4.3E-08 1.5E-12 105.3 42.0 342 201-546 205-649 (1073)
76 1lrv_A LRV, leucine-rich repea 99.3 3.6E-13 1.2E-17 118.8 2.2 186 168-459 55-242 (244)
77 4db6_A Armadillo repeat protei 99.3 2.5E-10 8.5E-15 100.7 19.7 184 318-501 13-208 (210)
78 1lrv_A LRV, leucine-rich repea 99.3 3.6E-13 1.2E-17 118.8 0.3 185 246-536 57-241 (244)
79 3gjx_A Exportin-1; transport, 99.3 1.4E-07 4.8E-12 101.3 42.9 488 10-507 29-649 (1073)
80 2db0_A 253AA long hypothetical 99.2 1.4E-08 4.8E-13 81.2 23.7 214 316-540 31-245 (253)
81 2db0_A 253AA long hypothetical 99.2 3.4E-08 1.2E-12 79.0 25.1 218 353-581 29-247 (253)
82 3a6p_A Exportin-5; exportin-5, 99.2 8.3E-08 2.8E-12 106.4 38.2 505 10-522 12-681 (1204)
83 2iw3_A Elongation factor 3A; a 99.2 9.9E-09 3.4E-13 107.8 28.3 256 239-503 54-325 (986)
84 4ffb_C Protein STU2; tubulin f 99.2 2.5E-10 8.4E-15 105.2 14.0 181 400-583 14-215 (278)
85 2of3_A ZYG-9; multifunctional 99.2 3E-09 1E-13 94.0 19.9 178 400-583 51-239 (266)
86 3nmw_A APC variant protein; AR 99.2 3.5E-09 1.2E-13 100.1 21.2 212 369-580 97-334 (354)
87 3nmw_A APC variant protein; AR 99.2 8.6E-09 2.9E-13 97.4 23.8 216 330-545 97-338 (354)
88 3b2a_A TON_1937, putative unch 99.1 7.1E-09 2.4E-13 86.9 19.5 223 356-583 33-264 (265)
89 2of3_A ZYG-9; multifunctional 99.1 3.9E-09 1.3E-13 93.4 18.6 180 284-469 52-242 (266)
90 3tjz_B Coatomer subunit gamma; 99.1 8.8E-10 3E-14 102.6 14.1 282 278-576 68-349 (355)
91 1xqr_A HSPBP1 protein; armadil 99.1 6.7E-09 2.3E-13 95.3 19.3 171 411-581 56-239 (296)
92 1xqr_A HSPBP1 protein; armadil 99.1 1.8E-08 6.2E-13 92.4 21.8 209 371-579 55-286 (296)
93 3a6p_A Exportin-5; exportin-5, 99.1 2.9E-07 9.8E-12 102.1 34.9 475 59-544 25-660 (1204)
94 3oc3_A Helicase MOT1, MOT1; re 99.1 1.1E-09 3.9E-14 103.5 12.1 255 279-576 175-432 (800)
95 3tjz_B Coatomer subunit gamma; 99.0 4.1E-09 1.4E-13 98.1 15.8 284 239-539 68-351 (355)
96 4ffb_C Protein STU2; tubulin f 99.0 1.3E-08 4.6E-13 93.6 18.3 183 283-468 14-217 (278)
97 3oc3_A Helicase MOT1, MOT1; re 98.9 2.9E-08 9.8E-13 94.2 16.4 252 11-303 176-432 (800)
98 3b2a_A TON_1937, putative unch 98.9 1.9E-07 6.6E-12 78.4 19.5 181 318-503 34-219 (265)
99 1te4_A Conserved protein MTH18 98.9 3E-10 1E-14 91.3 0.5 121 433-578 11-131 (131)
100 3l9t_A Putative uncharacterize 98.8 1.1E-07 3.9E-12 80.9 14.6 139 200-349 69-210 (240)
101 1te4_A Conserved protein MTH18 98.8 1.3E-09 4.6E-14 87.4 1.8 115 280-419 14-128 (131)
102 3l9t_A Putative uncharacterize 98.7 4.2E-07 1.4E-11 77.4 15.6 139 237-386 69-208 (240)
103 1vsy_5 Proteasome activator BL 98.7 1.1E-06 3.6E-11 93.9 22.5 385 154-544 499-969 (997)
104 1vsy_5 Proteasome activator BL 98.6 3.5E-05 1.2E-09 82.4 28.3 144 435-581 802-967 (997)
105 3u0r_A Apoptosis inhibitor 5; 98.1 0.0027 9.2E-08 60.2 24.8 255 177-443 42-317 (507)
106 3grl_A General vesicular trans 98.0 0.0024 8.2E-08 63.5 25.2 324 161-502 19-394 (651)
107 4gmo_A Putative uncharacterize 98.0 0.0061 2.1E-07 63.4 29.6 180 47-229 34-258 (684)
108 4gmo_A Putative uncharacterize 98.0 0.022 7.4E-07 59.3 36.1 184 85-270 34-260 (684)
109 3tt9_A Plakophilin-2; cell adh 98.0 0.00051 1.7E-08 60.0 17.4 185 396-580 9-229 (233)
110 3u0r_A Apoptosis inhibitor 5; 97.9 0.016 5.3E-07 55.1 29.1 58 502-559 254-320 (507)
111 3tt9_A Plakophilin-2; cell adh 97.9 0.00021 7.1E-09 62.4 13.2 145 436-580 10-180 (233)
112 3grl_A General vesicular trans 97.8 0.015 5.3E-07 57.9 26.6 185 394-578 121-340 (651)
113 1lsh_A Lipovitellin (LV-1N, LV 97.3 0.029 1E-06 61.2 22.1 273 163-467 289-580 (1056)
114 3o2t_A Symplekin; heat repeat, 97.2 0.15 5.1E-06 47.8 27.3 86 473-560 225-320 (386)
115 1lsh_A Lipovitellin (LV-1N, LV 96.9 0.097 3.3E-06 57.2 21.7 158 251-428 407-580 (1056)
116 3gs3_A Symplekin, LD45768P; he 96.6 0.36 1.2E-05 42.5 21.6 70 122-192 50-119 (257)
117 3o2t_A Symplekin; heat repeat, 96.5 0.53 1.8E-05 44.1 24.8 105 85-192 25-129 (386)
118 3gs3_A Symplekin, LD45768P; he 96.5 0.39 1.3E-05 42.3 23.6 89 294-385 31-119 (257)
119 4atg_A TAF6; transcription, TF 95.4 0.87 3E-05 37.9 14.9 141 371-522 23-178 (196)
120 4atg_A TAF6; transcription, TF 93.8 2.5 8.7E-05 35.1 14.5 141 254-405 23-178 (196)
121 1upk_A MO25 protein; transfera 93.7 4 0.00014 37.1 25.0 207 352-563 74-313 (341)
122 3g2s_A C-terminal fragment of 93.6 1.1 3.8E-05 35.6 11.2 97 404-506 24-130 (149)
123 2fv2_A RCD1 required for cell 93.4 3.6 0.00012 35.6 15.7 157 11-192 5-174 (268)
124 3ldz_A STAM-1, signal transduc 93.0 1.2 4.2E-05 34.9 10.7 96 404-505 18-117 (140)
125 3ldz_A STAM-1, signal transduc 92.9 0.76 2.6E-05 36.2 9.3 99 442-546 17-119 (140)
126 3g2s_A C-terminal fragment of 91.4 1.7 5.7E-05 34.5 9.6 74 472-545 47-130 (149)
127 1mhq_A ADP-ribosylation factor 91.2 4.6 0.00016 31.9 13.1 97 404-506 14-120 (148)
128 1x5b_A Signal transducing adap 91.1 1.6 5.4E-05 35.4 9.4 67 478-544 57-128 (163)
129 2b6c_A Hypothetical protein EF 90.7 3.4 0.00011 35.5 11.8 132 398-543 58-190 (220)
130 1juq_A ADP-ribosylation factor 90.5 5.4 0.00018 32.5 12.2 96 405-506 27-132 (171)
131 1mhq_A ADP-ribosylation factor 90.5 5.5 0.00019 31.5 12.4 98 443-546 14-121 (148)
132 1x5b_A Signal transducing adap 90.5 4.8 0.00016 32.5 11.7 97 404-506 28-129 (163)
133 1upk_A MO25 protein; transfera 90.3 10 0.00036 34.4 19.7 187 316-504 77-285 (341)
134 3dad_A FH1/FH2 domain-containi 88.6 14 0.00048 33.6 15.6 118 430-547 156-292 (339)
135 1juq_A ADP-ribosylation factor 88.5 5.9 0.0002 32.3 10.9 109 443-557 26-144 (171)
136 3zyq_A Hepatocyte growth facto 87.6 3.9 0.00013 35.2 9.8 36 434-469 45-80 (226)
137 2b6c_A Hypothetical protein EF 87.3 9.3 0.00032 32.7 12.2 131 359-503 58-189 (220)
138 3zyq_A Hepatocyte growth facto 87.0 7.9 0.00027 33.3 11.5 69 475-543 47-120 (226)
139 3ut4_A CTHE_2751, putative unc 84.8 2.8 9.7E-05 32.1 6.5 94 472-578 30-128 (134)
140 1elk_A Target of MYB1; superhe 84.7 7 0.00024 31.3 9.3 97 443-545 29-134 (157)
141 1vdy_A Hypothetical protein (R 81.6 6.1 0.00021 30.7 7.4 70 509-579 46-129 (140)
142 1elk_A Target of MYB1; superhe 81.2 19 0.00066 28.7 11.3 96 404-505 29-133 (157)
143 2npp_B PP2A, B subunit, serine 81.0 40 0.0014 32.3 21.0 250 249-502 127-399 (449)
144 3jxy_A Alkylpurine DNA glycosy 78.8 31 0.0011 29.7 14.1 131 281-425 64-196 (232)
145 2npp_B PP2A, B subunit, serine 78.8 47 0.0016 31.8 20.2 59 289-347 128-192 (449)
146 1dvp_A HRS, hepatocyte growth 76.4 11 0.00038 32.2 8.4 35 434-468 42-76 (220)
147 1dvp_A HRS, hepatocyte growth 76.4 26 0.00088 29.9 10.7 66 478-543 47-117 (220)
148 3fga_B Serine/threonine-protei 75.2 56 0.0019 30.7 21.1 107 474-580 252-366 (403)
149 3fga_B Serine/threonine-protei 75.0 56 0.0019 30.7 23.1 209 248-458 93-317 (403)
150 3ut4_A CTHE_2751, putative unc 74.8 26 0.0009 26.8 10.3 91 435-538 32-127 (134)
151 3jxy_A Alkylpurine DNA glycosy 74.8 40 0.0014 29.0 17.2 129 206-348 65-197 (232)
152 1vdy_A Hypothetical protein (R 74.0 22 0.00077 27.6 8.6 66 402-468 18-83 (140)
153 2fv2_A RCD1 required for cell 73.8 32 0.0011 29.8 10.2 54 448-501 116-173 (268)
154 3ebb_A Phospholipase A2-activa 72.6 55 0.0019 29.5 14.7 107 474-580 148-263 (304)
155 2jak_A Serine/threonine-protei 64.2 95 0.0032 29.1 15.9 209 248-458 138-362 (392)
156 3rru_A TOM1L1 protein; structu 63.7 53 0.0018 26.0 9.8 97 404-506 29-134 (152)
157 3bwt_A Protein PUF4; pumilio, 61.6 97 0.0033 28.3 12.2 8 517-524 275-282 (333)
158 1t06_A Hypothetical protein; s 58.4 52 0.0018 28.4 8.9 68 319-386 110-181 (235)
159 1ho8_A Vacuolar ATP synthase s 53.7 1.6E+02 0.0055 28.4 24.6 69 395-463 395-476 (480)
160 1vsy_4 Proteasome activator BL 52.0 2.3E+02 0.0079 29.7 24.2 144 435-582 520-689 (799)
161 3vld_A DNA mismatch repair pro 50.4 1.8E+02 0.0062 28.0 12.2 141 394-543 72-227 (500)
162 3dad_A FH1/FH2 domain-containi 50.4 1.5E+02 0.0051 27.0 17.1 110 397-506 162-290 (339)
163 1t06_A Hypothetical protein; s 47.6 85 0.0029 27.0 8.5 69 474-542 109-181 (235)
164 1vsy_4 Proteasome activator BL 47.3 2.7E+02 0.0093 29.1 23.8 35 551-585 749-788 (799)
165 1ho8_A Vacuolar ATP synthase s 43.0 2.4E+02 0.0081 27.2 26.7 27 187-213 82-108 (480)
166 3gvo_A Pumilio 2, pumilio homo 41.3 2.1E+02 0.0073 26.2 13.9 6 363-368 210-215 (351)
167 3gvo_A Pumilio 2, pumilio homo 41.3 2.1E+02 0.0073 26.2 13.6 6 285-290 210-215 (351)
168 2d9d_A BAG family molecular ch 39.6 88 0.003 21.3 6.4 36 548-583 42-77 (89)
169 2jak_A Serine/threonine-protei 38.6 2.5E+02 0.0086 26.3 14.9 178 357-536 175-362 (392)
170 1sz9_A PCF11 protein; RNA poly 37.7 1.4E+02 0.0049 23.2 9.8 71 471-541 41-114 (144)
171 4flb_A Regulation of nuclear P 37.6 1.3E+02 0.0045 22.8 10.3 58 362-426 14-71 (132)
172 3l3f_X Protein DOA1, DOA1/UFD3 34.2 11 0.00037 34.9 0.7 97 484-580 210-326 (362)
173 1sz9_A PCF11 protein; RNA poly 32.0 1.8E+02 0.0061 22.6 10.3 69 394-462 42-113 (144)
174 3pst_A Protein DOA1; protein d 29.3 18 0.00061 34.2 1.3 97 484-580 273-389 (425)
175 4flb_A Regulation of nuclear P 27.6 2E+02 0.0068 21.8 7.8 18 524-541 52-69 (132)
176 3gae_A Protein DOA1; UFD3, CDC 27.6 1.7E+02 0.0057 25.5 7.2 97 484-580 101-217 (253)
177 3eg5_B Protein diaphanous homo 27.1 3.9E+02 0.013 24.9 13.1 30 473-502 162-191 (383)
178 3bwt_A Protein PUF4; pumilio, 26.9 3.5E+02 0.012 24.4 14.8 12 126-137 47-58 (333)
179 3rru_A TOM1L1 protein; structu 23.1 2.7E+02 0.0094 21.8 9.7 22 253-274 115-136 (152)
180 4fu3_A Regulation of nuclear P 22.9 2.5E+02 0.0086 21.3 7.1 57 363-426 14-70 (135)
181 2qzg_A Conserved uncharacteriz 21.4 2.2E+02 0.0075 20.1 8.2 70 509-578 15-89 (94)
182 2f31_A Diaphanous protein homo 20.8 3.9E+02 0.013 22.7 12.5 55 449-503 69-126 (233)
183 3k49_A MRNA-binding protein PU 20.5 4.2E+02 0.014 24.4 9.0 47 278-330 28-77 (369)
184 3k49_A MRNA-binding protein PU 20.5 5E+02 0.017 23.9 13.0 14 146-159 43-56 (369)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=1.7e-62 Score=512.04 Aligned_cols=578 Identities=59% Similarity=0.960 Sum_probs=539.5
Q ss_pred CCCCCcccHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhcccccccccCCchHHHHHHHHHHhccccccCCcc
Q 007918 3 MVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVE 82 (585)
Q Consensus 3 ~~~~~~~~i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~~ 82 (585)
..||++|||..+++.++++|+..|..|++.++.++..+|++..+.+++|++....|++++||..+++.|+.+..++++++
T Consensus 4 ~~~~~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~~ 83 (588)
T 1b3u_A 4 DGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPE 83 (588)
T ss_dssp CTTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGG
T ss_pred ccCCCcCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcHH
Confidence 45899999999999999999999999999999999999998888899999988668899999999999999999888888
Q ss_pred hHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChHHHH
Q 007918 83 HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKT 162 (585)
Q Consensus 83 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~ 162 (585)
+.+.+++.+..+..++++.||..|..++..++..++++...+.++|++.++.+++++.+|..++.+++.++...++..++
T Consensus 84 ~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~ 163 (588)
T 1b3u_A 84 YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA 163 (588)
T ss_dssp GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHH
T ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence 88999999999999999999999999999999999998888899999999999889999999999999999999988899
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC--hhHHHHHHHHHHHHhhccCchhhhhhh
Q 007918 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEPQDCVAHI 240 (585)
Q Consensus 163 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~~~~~~~~ 240 (585)
.+++.+..+++|+++.||..++.+++.++...+++...+.++|.+..+++| +.+|..++.+++.+++..+++...+.+
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 243 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV 243 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999999999999999999999887777778899999998888 679999999999999999887778889
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHH----HHHH
Q 007918 241 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQ 316 (585)
Q Consensus 241 ~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~ 316 (585)
+|.+.++.+|++|.||..++.+++.++...+.+.....++|.+..+++|++++||..++.+++.++..++.+ .+.+
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 323 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHH
Confidence 999999999999999999999999999988776556689999999999999999999999999999988865 4568
Q ss_pred hhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhH
Q 007918 317 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 396 (585)
Q Consensus 317 ~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 396 (585)
.++|.+..+++|++|.||..++.+++.++..+|.+...+.+.|.+...++|++++||..++.+++.+...+|.+.+.+.+
T Consensus 324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~ 403 (588)
T 1b3u_A 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL 403 (588)
T ss_dssp THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 89999999999999999999999999999999988777889999999999999999999999999999999887777889
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHH
Q 007918 397 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP 476 (585)
Q Consensus 397 l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~ 476 (585)
+|.+..+++|++|++|..++.+++.++..+|.+.+.+.++|.+...+.|+++.||.+|+.+++.++..+|.+++.+.++|
T Consensus 404 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp 483 (588)
T 1b3u_A 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIP 483 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHH
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 99999999999999999999999999999998887788999999999999999999999999999999999877889999
Q ss_pred HHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHH
Q 007918 477 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCL 556 (585)
Q Consensus 477 ~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l 556 (585)
.+..+..++++.+|.+++.+++.++..+|.+.+.+.++|.+...++|++++||..++++++.+...++.....+.+.|.|
T Consensus 484 ~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l 563 (588)
T 1b3u_A 484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPIL 563 (588)
T ss_dssp HHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 99999999999999999999999999999888889999999999999999999999999999999888877778899999
Q ss_pred HHhcCCCCccHHHHHHHHHHHHHH
Q 007918 557 VELTEDPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 557 ~~l~~D~~~~Vr~~a~~al~~l~~ 580 (585)
..+..|+|++||..|.+|++.+..
T Consensus 564 ~~l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 564 EKLTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred HHHcCCCchhHHHHHHHHHHHhhc
Confidence 999999999999999999998764
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=100.00 E-value=3.9e-48 Score=403.60 Aligned_cols=529 Identities=20% Similarity=0.292 Sum_probs=475.4
Q ss_pred ccccccCCchHHHHHHHHHHhccccccCCcchHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHH
Q 007918 52 FLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVK 131 (585)
Q Consensus 52 ~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~ 131 (585)
++..+.++++++|..+++.++.++..+|.......++|.+.... ++++.||..+..+|+.+...++.......++|.+.
T Consensus 15 l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~ 93 (588)
T 1b3u_A 15 LIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLE 93 (588)
T ss_dssp HHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHH
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 33347788999999999999888766654445567888887766 77889999999999988887776667788999999
Q ss_pred HhhcCcCccchhhHHhhhHhhcCCCChH-HHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHh
Q 007918 132 RLAAGEWFTARVSACGLFHIAYPSAPDI-LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDL 210 (585)
Q Consensus 132 ~l~~~~~~~~r~~a~~~l~~~~~~~~~~-~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l 210 (585)
.+..++++.+|..++..+..++...++. ....+++.+..+.+++++.+|..++..++.++...+ +...+.+.|.+..+
T Consensus 94 ~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~-~~~~~~l~~~l~~l 172 (588)
T 1b3u_A 94 SLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS-SAVKAELRQYFRNL 172 (588)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC-HHHHHHHHHHHHHH
T ss_pred HHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHH
Confidence 9888888999999999999999988875 556788999999999999999999999999987765 34578899999888
Q ss_pred ccC--hhHHHHHHHHHHHHhhccCchhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcc
Q 007918 211 TQD--DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR 288 (585)
Q Consensus 211 ~~d--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~ 288 (585)
++| +.||..++++++.+++..+.+...+.++|.+..+++|+++.||..++.+++.++..++.+...+.++|.+..+++
T Consensus 173 ~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 252 (588)
T 1b3u_A 173 CSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAE 252 (588)
T ss_dssp HTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHT
T ss_pred hCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcc
Confidence 888 679999999999999999887778889999999999999999999999999999988765555678999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHH----HHHHhHHHHHHHh
Q 007918 289 DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD----ATIEQLLPIFLSL 364 (585)
Q Consensus 289 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~ 364 (585)
|++|.||..++++++.++...+++.+.+.++|.+..+++|+++.||..++.+++.++...+.+ .+.+.++|.+..+
T Consensus 253 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~ 332 (588)
T 1b3u_A 253 DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL 332 (588)
T ss_dssp CSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999998888777889999999999999999999999999999988765 5678899999999
Q ss_pred hcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHcc
Q 007918 365 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ 444 (585)
Q Consensus 365 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~ 444 (585)
++|.++.||..++.+++.++..+|.+...+.++|.+..+++|+++.+|..++..++.+.+..|.+...+.++|.+..++.
T Consensus 333 l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~ 412 (588)
T 1b3u_A 333 VSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE 412 (588)
T ss_dssp HTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999987666789999999999999999999999999999998887777889999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCC
Q 007918 445 DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR 524 (585)
Q Consensus 445 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~ 524 (585)
|++|.+|..++.+++.++..+|.+.+.+.++|.+...++|+++.+|..++.+++.++..+|..++.+.++|.+..+.+|+
T Consensus 413 d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~ 492 (588)
T 1b3u_A 413 DAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDP 492 (588)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCS
T ss_pred CCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCC
Confidence 99999999999999999999998766678999999999999999999999999999999998877889999999999999
Q ss_pred CchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 007918 525 VPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 582 (585)
Q Consensus 525 ~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~~l 582 (585)
++.+|..++.+++.+...++...+.+.++|.+..++.|++++||..+.++++.+.+.+
T Consensus 493 ~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 550 (588)
T 1b3u_A 493 NYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPIL 550 (588)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGS
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHh
Confidence 9999999999999999998888888899999999999999999999999999998654
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=2.5e-35 Score=318.85 Aligned_cols=525 Identities=18% Similarity=0.149 Sum_probs=417.4
Q ss_pred ccCCchHHHHHHHHHHhccccccCCcchHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhH-------HhhHHH
Q 007918 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDL-------VDWYIP 128 (585)
Q Consensus 56 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~-------~~~l~~ 128 (585)
+.+.++.||..++.+++.++... .+..++.+++.+...+.++++.+|+.+..++..+++..++..- ...++|
T Consensus 99 l~~~~~~vr~~~a~~i~~ia~~~-~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~ 177 (852)
T 4fdd_A 99 IGDSSPLIRATVGILITTIASKG-ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIP 177 (852)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHT-TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHhc-CccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHH
Confidence 45778899999999999987754 3456788899999999999999999999999999998876421 355788
Q ss_pred HHHHhhcCcCccchhhHHhhhHhhcCCCChH---HHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcc--cchHHHH
Q 007918 129 LVKRLAAGEWFTARVSACGLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AHLKTDI 203 (585)
Q Consensus 129 ~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l 203 (585)
.+.++.+++++.+|..++..+..++...+.. ....+++.+..+++|+++.+|..++.+|+.++...+. ..+.+.+
T Consensus 178 ~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l 257 (852)
T 4fdd_A 178 KFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNI 257 (852)
T ss_dssp HHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 8888888888999999999998887765543 3567888899999999999999999999999986542 1234557
Q ss_pred HHHHHHhccC--hhHHHHHHHHHHHHhhccCc----hhhhhhhHHHHHHhc-----------cC-----------CChHH
Q 007918 204 MSIFEDLTQD--DSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFS-----------QD-----------KSWRV 255 (585)
Q Consensus 204 ~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~-----------~d-----------~~~~v 255 (585)
++.+....+| +.+|..+++.+..+++.... ..+...++|.+.+.+ .| .+|.+
T Consensus 258 ~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~v 337 (852)
T 4fdd_A 258 VEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNL 337 (852)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCH
T ss_pred HHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchH
Confidence 7777777777 67999999999998864211 223456677776654 34 57899
Q ss_pred HHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHH--HHHHhhHHHHHHhccCCcHHH
Q 007918 256 RYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHV 333 (585)
Q Consensus 256 R~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~v 333 (585)
|..++.+++.++...|+.. ...++|.+.+.+.|++|.+|.+++.+++.+++..+.. .+.+.++|.+...++|+++.|
T Consensus 338 r~~a~~~L~~la~~~~~~~-~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~V 416 (852)
T 4fdd_A 338 RKCSAAALDVLANVYRDEL-LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALV 416 (852)
T ss_dssp HHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHhccHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 9999999999999988543 4468899999999999999999999999998765432 244778899999999999999
Q ss_pred HHHHHHHHHhhchhhCH---HHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchh--HHhhhHHHHHHHHhcCCC
Q 007918 334 RSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRH 408 (585)
Q Consensus 334 r~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~~~~~~ 408 (585)
|.+++.+++.++...+. ..+...++|.+...+.|.++.||..|+.+++.+++..+.. .+.+.+++.+...+++.+
T Consensus 417 r~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~ 496 (852)
T 4fdd_A 417 RSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQ 496 (852)
T ss_dssp HHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhC
Confidence 99999999999987653 3456778899999999999999999999999999877754 244667777777777777
Q ss_pred hHHHHHHHHHhHHHHHhhChhh----HHHHHHHHHH---HHccCCchHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHH
Q 007918 409 WRVRLAIIEYIPLLASQLGVGF----FDDKLGALCM---QWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVL 479 (585)
Q Consensus 409 ~~~r~~~~~~l~~l~~~~~~~~----~~~~l~~~l~---~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~ll~~l~ 479 (585)
......++++++.+++..|... +.+.++|.+. ..+.|.+.++| .++++++.++..+|..+ +.+.+++.+.
T Consensus 497 ~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~ 575 (852)
T 4fdd_A 497 HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCV 575 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 6777778888998888776443 5667788777 45567777776 78999999999888753 2344555444
Q ss_pred hhhc-----------------CcchHHHHHHHHHHHHhhhhcChHH--HH--hcHHHHHHhhcCCCCchHHHHHHHHHHH
Q 007918 480 EMIN-----------------NPHYLYRMTILRAISLLAPVMGSEI--TC--SRLLPVVINASKDRVPNIKFNVAKVLQS 538 (585)
Q Consensus 480 ~~l~-----------------~~~~~~R~~a~~~l~~l~~~~~~~~--~~--~~i~~~l~~~l~d~~~~vR~~~~~~l~~ 538 (585)
+.+. .++...|..++.+++.++..+|... +. ..+++.+..++.|+.+.||..+..+++.
T Consensus 576 ~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~ 655 (852)
T 4fdd_A 576 NLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGD 655 (852)
T ss_dssp HHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 3322 2256789999999999999888653 22 6789999999999999999999999999
Q ss_pred HHhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 007918 539 LIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 583 (585)
Q Consensus 539 l~~~~~~~--~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~~l~ 583 (585)
++..++.. .+...++|.+.+.+.+.+..||..|.++++.++..+.
T Consensus 656 l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~ 702 (852)
T 4fdd_A 656 LTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMG 702 (852)
T ss_dssp HHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhh
Confidence 99877654 4456789999998888889999999999999877653
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=1.5e-35 Score=320.43 Aligned_cols=567 Identities=14% Similarity=0.161 Sum_probs=447.3
Q ss_pred HHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhccccccc-ccCCchHHHHHHHHHHhccccccCCc-------ch
Q 007918 12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGV-------EH 83 (585)
Q Consensus 12 ~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~-------~~ 83 (585)
..+++.+.++++..|..+...++.++...++ ..+.+++|.+.+ +.+.++.+|..+..+|+.+....+.. ..
T Consensus 93 ~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~ 171 (852)
T 4fdd_A 93 SECLNNIGDSSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRP 171 (852)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcch
Confidence 4566668899999999999999999988754 467789999988 67778899999999888876644321 12
Q ss_pred HHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhh--HHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCCh---
Q 007918 84 AHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD--LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD--- 158 (585)
Q Consensus 84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~--- 158 (585)
...++|.+.+++.++++.||..|+.++..++...+... ....+++.+.++..|+++.+|..++..++.++...++
T Consensus 172 ~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~ 251 (852)
T 4fdd_A 172 LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLL 251 (852)
T ss_dssp HHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 45678888888899999999999999988776554321 2345677777788888899999999999998876654
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhc----ccchHHHHHHHHHHhc-----------cC----------
Q 007918 159 ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE----PAHLKTDIMSIFEDLT-----------QD---------- 213 (585)
Q Consensus 159 ~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~l~-----------~d---------- 213 (585)
.+...+++.+...+.|+++.||..++..+..+++... -..+.+.++|.+...+ .|
T Consensus 252 ~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~ 331 (852)
T 4fdd_A 252 PHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDT 331 (852)
T ss_dssp GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccc
Confidence 3567899999999999999999999999998875311 0224456667665554 22
Q ss_pred ---hhHHHHHHHHHHHHhhccCchhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCc--ccccchHHHHHHhcc
Q 007918 214 ---DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLR 288 (585)
Q Consensus 214 ---~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~ll~ 288 (585)
+.+|..+..+++.++...++ ...+.++|.+.+.+.|++|.+|..++.+++.++...++. .....++|.+...++
T Consensus 332 ~~~~~vr~~a~~~L~~la~~~~~-~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~ 410 (852)
T 4fdd_A 332 ISDWNLRKCSAAALDVLANVYRD-ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS 410 (852)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTT
T ss_pred cccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcC
Confidence 24799999999999998874 566789999999999999999999999999998765432 123468999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhhCHH---HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHH--HHHHhHHHHHHH
Q 007918 289 DNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLS 363 (585)
Q Consensus 289 d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~ 363 (585)
|+++.||..++.+++.++...+.. .+...+++.+...+.|+++.||..++.+++.+++..+.. .+.+.+++.+..
T Consensus 411 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~ 490 (852)
T 4fdd_A 411 DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVF 490 (852)
T ss_dssp CSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHH
Confidence 999999999999999999876532 345678888888899999999999999999999877653 356778888888
Q ss_pred hhcCCChHHHHHHHHHhHHhhhhhchh----HHhhhHHHHHHH---HhcCCChHHHHHHHHHhHHHHHhhChhhH--HHH
Q 007918 364 LLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVE---LAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDK 434 (585)
Q Consensus 364 ~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~---~~~~~~~~~r~~~~~~l~~l~~~~~~~~~--~~~ 434 (585)
.+++........+..+++.++...|.. .+.+.++|.+.+ .+.|.++..| .++++++.++..+|..+. .+.
T Consensus 491 ~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~ 569 (852)
T 4fdd_A 491 AFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEP 569 (852)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHH
Confidence 888777777777888888888776643 355678888774 4456667776 789999999999887442 233
Q ss_pred HHHHHHHHc-----------------cCCchHHHHHHHHHHHHHHHHhCHHHH----HhhhHHHHHhhhcCcchHHHHHH
Q 007918 435 LGALCMQWL-----------------QDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLEMINNPHYLYRMTI 493 (585)
Q Consensus 435 l~~~l~~~l-----------------~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~~l~~~~~~~R~~a 493 (585)
+.+.+...+ ..++.++|..++.+++.++..+|.++. ...+++.+...+.|++..+|..+
T Consensus 570 i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a 649 (852)
T 4fdd_A 570 VYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSS 649 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHH
Confidence 444333332 123577999999999999999986532 26789999999999999999999
Q ss_pred HHHHHHhhhhcChHH--HHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCCC--ccH
Q 007918 494 LRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPD--VDV 567 (585)
Q Consensus 494 ~~~l~~l~~~~~~~~--~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~l~~D~~--~~V 567 (585)
..+++.++..++... +.+.++|.+...++++.+.+|.+++++++.++...+.. .+...+++.|..++++++ ..+
T Consensus 650 ~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~ 729 (852)
T 4fdd_A 650 FALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTL 729 (852)
T ss_dssp HHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchH
Confidence 999999998887643 46789999999998889999999999999999887653 556778888888777664 479
Q ss_pred HHHHHHHHHHHHHh
Q 007918 568 RFFATQAIQSIDHV 581 (585)
Q Consensus 568 r~~a~~al~~l~~~ 581 (585)
+.+|+.++++++..
T Consensus 730 ~~~a~~~igrl~~~ 743 (852)
T 4fdd_A 730 LENTAITIGRLGYV 743 (852)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999875
No 5
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=2.8e-35 Score=330.73 Aligned_cols=570 Identities=12% Similarity=0.156 Sum_probs=451.6
Q ss_pred ccHHHHHHHhcChhHHHHHHHhhhHHHHHHhhC---hhhhhhhccccccc-ccCCchHHHHHHHHHHhccccccCCcchH
Q 007918 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALG---EERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHA 84 (585)
Q Consensus 9 ~~i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~ 84 (585)
+.+..+++++.++|+..|.+|...+.+....-. .+.....+++.+.+ +.|.++++|.+++.+++.++...+ +.+.
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~-~~~~ 84 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK-EYQV 84 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSC-HHHH
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCC-HHHH
Confidence 568999999999999999999988776443211 01223456666666 678899999999999999988665 3566
Q ss_pred HhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChh--------hHHhhHHHHHHHhhcC-cCccchhhHHhhhHhhcCC
Q 007918 85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--------DLVDWYIPLVKRLAAG-EWFTARVSACGLFHIAYPS 155 (585)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~l~~~l~~l~~~-~~~~~r~~a~~~l~~~~~~ 155 (585)
..+++.+...+.|+++.+|.++..+++.++..++++ ...+.++|.+.+...+ +++.+|..++..+..++..
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 778888888888999999999999999999988865 2577899999988884 6788999999999888754
Q ss_pred CCh---HHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHH-HhccC--hhHHHHHHHHHHHHhh
Q 007918 156 APD---ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFE-DLTQD--DSVRLLAVEGCAALGK 229 (585)
Q Consensus 156 ~~~---~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~-~l~~d--~~vr~~a~~~l~~l~~ 229 (585)
.+. .+...+++.+...+.++++.||..++.+++.++...+...+ +.+++.+. .+.++ +.+|..++++++.++.
T Consensus 165 ~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~ 243 (1230)
T 1u6g_C 165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVF-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISR 243 (1230)
T ss_dssp TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHhccCCchhHHHHHHHHHHHHHH
Confidence 332 36788999999999999999999999999999987755433 33344333 33333 4588899999999998
Q ss_pred ccCc--hhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCccc--ccchHHHHHHhcc-----------------
Q 007918 230 LLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLR----------------- 288 (585)
Q Consensus 230 ~~~~--~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~ll~----------------- 288 (585)
..++ ..+.+.++|.+.+.++|+++.+|..++.+++.++..++.... ...++|.+.+.+.
T Consensus 244 ~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~ 323 (1230)
T 1u6g_C 244 QAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAM 323 (1230)
T ss_dssp HSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---------------
T ss_pred HhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccc
Confidence 8775 245678999999999999999999999999999998876532 2345555544432
Q ss_pred --------------------CChHHHHHHHHHHHHHHHHhhCH--HHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhch
Q 007918 289 --------------------DNEAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP 346 (585)
Q Consensus 289 --------------------d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~ 346 (585)
|..|.+|.+++..+..++...+. ..+.+.++|.+...+.|.++.||..++.++..+..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 403 (1230)
T 1u6g_C 324 DADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLK 403 (1230)
T ss_dssp ---------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHH
T ss_pred cccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 12377999999999999986664 35567888998888899999999999999988876
Q ss_pred hhCH---------------------HHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhch--hHHhhhHHHHHHHH
Q 007918 347 LLGK---------------------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVEL 403 (585)
Q Consensus 347 ~~~~---------------------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~ 403 (585)
..+. ..+.+.++|.+.+.++|+++.+|.+++.+++.++...+. ..+.+.++|.+...
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~ 483 (1230)
T 1u6g_C 404 QTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFS 483 (1230)
T ss_dssp HHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHH
T ss_pred HhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHH
Confidence 5532 234566778888889999999999999999999887542 12346789999999
Q ss_pred hcCCCh--HHHHHHHHHhHHHHHhhChhh---HHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCH---------HH
Q 007918 404 AEDRHW--RVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---------EW 469 (585)
Q Consensus 404 ~~~~~~--~~r~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------~~ 469 (585)
++|+++ .+|..++..+..+.+..|++. +.+.++|.+...+.|+++.||..++.+++.+++.+|. ..
T Consensus 484 L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~ 563 (1230)
T 1u6g_C 484 LNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATP 563 (1230)
T ss_dssp TTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHH
T ss_pred HcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHH
Confidence 999876 899999999999988777664 3446788899999999999999999999999998876 13
Q ss_pred HHhhhHHHHHhhh--cCcchHHHHHHHHHHHHhhhhcChHH--HHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh--
Q 007918 470 AMQHITPQVLEMI--NNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV-- 543 (585)
Q Consensus 470 ~~~~ll~~l~~~l--~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~-- 543 (585)
+.+.++|.++..+ .|.+..+|.+++.+++.++...|... +.+.+++.+...+.+ +.+|..++++++.++...
T Consensus 564 ~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~--e~~r~~~~~al~~i~~~~~~ 641 (1230)
T 1u6g_C 564 YIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKN--EITRLTTVKALTLIAGSPLK 641 (1230)
T ss_dssp HHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTS--SSHHHHHHHHHHHHTTCSSC
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhcc--chhHHHHHHHHHHHHhCccc
Confidence 5678999998888 77889999999999999999877653 357778888777764 458999999999987643
Q ss_pred -chHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 007918 544 -DQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 582 (585)
Q Consensus 544 -~~~~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~~l 582 (585)
....+...++|.|...+.|.++.+|.++..+++.+.+..
T Consensus 642 ~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~ 681 (1230)
T 1u6g_C 642 IDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNY 681 (1230)
T ss_dssp CCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 224677889999999999999999999999999988764
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=6.4e-34 Score=309.93 Aligned_cols=570 Identities=15% Similarity=0.171 Sum_probs=450.0
Q ss_pred HHHHHHHhcCh-hHHHHHHHhhhHHHHHHhhChh-----hhhhhccccccc-ccCC--chHHHHHHHHHHhccccccCCc
Q 007918 11 IAVLIDELKND-DIQLRLNSIRRLSTIARALGEE-----RTRKELIPFLSE-NNDD--DDEVLLAMAEELGVFIPYVGGV 81 (585)
Q Consensus 11 i~~l~~~l~~~-~~~~R~~a~~~l~~~~~~~~~~-----~~~~~l~~~l~~-~~d~--~~~vr~~~~~~l~~l~~~~~~~ 81 (585)
+..|++.+.++ ++..|..++..++.+++..+++ .....+++.+.. +.+. +++||..+.++++.+..+++..
T Consensus 136 l~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~ 215 (861)
T 2bpt_A 136 MKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN 215 (861)
T ss_dssp HHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 67888889988 9999999999999999876643 244566777766 5555 7899999999998876554321
Q ss_pred ----chHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChh--hHHh-hHHHHHHHhhcCcCccchhhHHhhhHhhcC
Q 007918 82 ----EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--DLVD-WYIPLVKRLAAGEWFTARVSACGLFHIAYP 154 (585)
Q Consensus 82 ----~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~-~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~ 154 (585)
.....+++.+...+.++++.+|..+++++..++...+.. .... .+++++.....+.+..+|..++..+..++.
T Consensus 216 ~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~ 295 (861)
T 2bpt_A 216 MEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICE 295 (861)
T ss_dssp HTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred ccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 123557888888888999999999999999999877642 1223 566777777778888999999988877655
Q ss_pred CC-----------------C---hHHHHHHHHHHHhhcCC-------CchHHHHHHHHhHHHHHhhhcccchHHHHHHHH
Q 007918 155 SA-----------------P---DILKTELRSIYTQLCQD-------DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIF 207 (585)
Q Consensus 155 ~~-----------------~---~~~~~~l~~~l~~l~~d-------~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l 207 (585)
.. . ......+++.+...+.+ +++.+|..+..+++.++...+ +...+.+.|.+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l 374 (861)
T 2bpt_A 296 EEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-NHILEPVLEFV 374 (861)
T ss_dssp HHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-GGGHHHHHHHH
T ss_pred HHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc-HhHHHHHHHHH
Confidence 32 1 12346777887766653 457899999999999999886 55677888888
Q ss_pred HHhccC--hhHHHHHHHHHHHHhhccCch---hhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCc----ccccc
Q 007918 208 EDLTQD--DSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRMD 278 (585)
Q Consensus 208 ~~l~~d--~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~ 278 (585)
...+++ +.+|..++.+++.+++..+++ .+.+.++|.+...+.|+++.||..++.+++.++..++.. .....
T Consensus 375 ~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 454 (861)
T 2bpt_A 375 EQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPG 454 (861)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHH
T ss_pred HHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence 888777 779999999999999876532 345668888899999999999999999999999987643 23456
Q ss_pred hHHHHHHhccCChHHHHHHHHHHHHHHHHhhCH---H---HHHHhhHHHHHHhcc--CCcHHHHHHHHHHHHhhchhhCH
Q 007918 279 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---E---LAIQHILPCVKELSS--DSSQHVRSALASVIMGMAPLLGK 350 (585)
Q Consensus 279 l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~---~---~~~~~i~~~l~~~~~--d~~~~vr~~a~~~l~~l~~~~~~ 350 (585)
++|.+...++|+ +.||..++.++..+++.++. . .+.+.+++.+...+. |.++.+|..++.+++.++...+.
T Consensus 455 ~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~ 533 (861)
T 2bpt_A 455 VVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD 533 (861)
T ss_dssp HHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch
Confidence 888888899887 99999999999999988751 1 344677788888776 45589999999999999988875
Q ss_pred H--HHHHhHHHHHHHhhcC---------------CChHHHHHHHHHhHHhhhhhchh--HHhhhHHHHHHHHhcCCCh-H
Q 007918 351 D--ATIEQLLPIFLSLLKD---------------EFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHW-R 410 (585)
Q Consensus 351 ~--~~~~~l~~~l~~~l~d---------------~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~~~~~~~-~ 410 (585)
+ .+.+.++|.+...+.+ ....+|..++.+++.++..+|.. .+.+.++|.+...+++.++ .
T Consensus 534 ~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 613 (861)
T 2bpt_A 534 TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAF 613 (861)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCc
Confidence 4 2455667777666542 24578899999999999988864 3446788888888888877 8
Q ss_pred HHHHHHHHhHHHHHhhChhh--HHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhcCcc
Q 007918 411 VRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPH 486 (585)
Q Consensus 411 ~r~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~~~~ 486 (585)
+|..++.+++.++...|..+ +.+.++|.+...+.++++.+|..++.+++.++...|..+ +.+.+++.+.+.+.+++
T Consensus 614 v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 693 (861)
T 2bpt_A 614 IEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPN 693 (861)
T ss_dssp THHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCcc
Confidence 99999999999998887654 356789999999999999999999999999999887643 35678888888888765
Q ss_pred --hHHHHHHHHHHHHhhhhcChHH--HHhcHHHHHHhhcCCCC-----------chHHHHHHHHHHHHHhhhch--H---
Q 007918 487 --YLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRV-----------PNIKFNVAKVLQSLIPIVDQ--S--- 546 (585)
Q Consensus 487 --~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~l~d~~-----------~~vR~~~~~~l~~l~~~~~~--~--- 546 (585)
..+|..++.+++.++..+|..+ +.+.++|.+...+.... ..+|.+++.+++.++..++. .
T Consensus 694 ~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~ 773 (861)
T 2bpt_A 694 ARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALF 773 (861)
T ss_dssp CCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHG
T ss_pred ccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 8899999999999999887654 47888999888876421 46899999999999877762 2
Q ss_pred HHHhhHHHHHHHhcCCC----CccHHHHHHHHHHHHHHhh
Q 007918 547 MVEKTIRPCLVELTEDP----DVDVRFFATQAIQSIDHVM 582 (585)
Q Consensus 547 ~~~~~~~~~l~~l~~D~----~~~Vr~~a~~al~~l~~~l 582 (585)
.+...+++.+...+.|. +..||..|..+++.+.+.+
T Consensus 774 ~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~ 813 (861)
T 2bpt_A 774 PYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMF 813 (861)
T ss_dssp GGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHc
Confidence 34456777777777774 8899999999999999887
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=6.7e-34 Score=309.76 Aligned_cols=570 Identities=12% Similarity=0.100 Sum_probs=450.1
Q ss_pred HHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhccccccc-ccCC-chHHHHHHHHHHhccccccCC-----cchH
Q 007918 12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD-DDEVLLAMAEELGVFIPYVGG-----VEHA 84 (585)
Q Consensus 12 ~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~-~~~vr~~~~~~l~~l~~~~~~-----~~~~ 84 (585)
..+++.+.++++..|..+...++.++...++...|.+++|.+.+ +.++ ++.+|..+...++.+....+. ..+.
T Consensus 98 ~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 177 (861)
T 2bpt_A 98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS 177 (861)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGH
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Confidence 46778899999999999999999999987765567889999988 6666 889999999988887765442 2356
Q ss_pred HhchHHHhhhhhch--hhHHHHHHHHHHHHHHhhcChh----hHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCCh
Q 007918 85 HVLLPPLETLCTVE--ETCVRDKAVESLCRIGSQMRES----DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD 158 (585)
Q Consensus 85 ~~l~~~l~~l~~~~--~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~ 158 (585)
..+++.+...+.++ ++.||..+++++..+...+... .....+++.+.....++++.+|..++.++..+....+.
T Consensus 178 ~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~ 257 (861)
T 2bpt_A 178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT 257 (861)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 66778887777887 7999999999999987655422 22456888888888888899999999999888765543
Q ss_pred ---HHHH-HHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcc-------------------cchHHHHHHHHHHhccC--
Q 007918 159 ---ILKT-ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-------------------AHLKTDIMSIFEDLTQD-- 213 (585)
Q Consensus 159 ---~~~~-~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-------------------~~~~~~l~~~l~~l~~d-- 213 (585)
.+.. .+++.+...+.|.++.+|..++..+..++..... ....+.++|.+...+.+
T Consensus 258 ~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~ 337 (861)
T 2bpt_A 258 FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN 337 (861)
T ss_dssp GCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445 7888888899999999999999999998875310 11235566666554432
Q ss_pred -------hhHHHHHHHHHHHHhhccCchhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcc---cccchHHHH
Q 007918 214 -------DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAY 283 (585)
Q Consensus 214 -------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l~~~l 283 (585)
+.+|..+..++..++..++. ...+.+++.+.+.+++.+|.+|..++.+++.++...+.+. ....++|.+
T Consensus 338 ~d~~d~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l 416 (861)
T 2bpt_A 338 EDPEDDDWNVSMSAGACLQLFAQNCGN-HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI 416 (861)
T ss_dssp CC-CCCCCHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH
T ss_pred cccccccCcHHHHHHHHHHHHHHHccH-hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 36999999999999998873 4567788999999999999999999999999886544111 123578888
Q ss_pred HHhccCChHHHHHHHHHHHHHHHHhhCH----HHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCH------HHH
Q 007918 284 VRLLRDNEAEVRIAAAGKVTKFCRILNP----ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK------DAT 353 (585)
Q Consensus 284 ~~ll~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~------~~~ 353 (585)
...+.|+++.||..++.+++.++..++. ..+.+.++|.+...++|+ +++|..++.++..+++.++. ..+
T Consensus 417 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~ 495 (861)
T 2bpt_A 417 LNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNF 495 (861)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGG
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence 9999999999999999999999988754 234578888888888886 99999999999999887651 235
Q ss_pred HHhHHHHHHHhhcC--CChHHHHHHHHHhHHhhhhhchhH--HhhhHHHHHHHHhcC---------------CChHHHHH
Q 007918 354 IEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAED---------------RHWRVRLA 414 (585)
Q Consensus 354 ~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~~~~---------------~~~~~r~~ 414 (585)
.+.+++.+...+.+ .++.||..++.+++.+....|.+. +.+.++|.+.+.+.+ ....+|..
T Consensus 496 ~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 575 (861)
T 2bpt_A 496 YPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSN 575 (861)
T ss_dssp HHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHH
Confidence 67788888888874 447999999999999998887542 234566666655432 24568889
Q ss_pred HHHHhHHHHHhhChh--hHHHHHHHHHHHHccCCch-HHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhcCcchHH
Q 007918 415 IIEYIPLLASQLGVG--FFDDKLGALCMQWLQDKVY-SIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLY 489 (585)
Q Consensus 415 ~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~~~~~~~ 489 (585)
++.+++.++...|.. .+.+.+++.+...+.+.+. .+|..++.+++.++...|.++ +.+.++|.+.+.++++++.+
T Consensus 576 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v 655 (861)
T 2bpt_A 576 ILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPV 655 (861)
T ss_dssp HHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHH
Confidence 999999999988764 3456788888898888877 899999999999999888654 45779999999998889999
Q ss_pred HHHHHHHHHHhhhhcChHH--HHhcHHHHHHhhcCCCC--chHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCC
Q 007918 490 RMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDP 563 (585)
Q Consensus 490 R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~l~d~~--~~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~l~~D~ 563 (585)
|..++.+++.++..+|... +...++|.+...+.+++ +.+|..++.+++.++...+.. .+.+.++|.+.......
T Consensus 656 r~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~ 735 (861)
T 2bpt_A 656 SITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTK 735 (861)
T ss_dssp HHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcC
Confidence 9999999999998887543 56788899999888765 899999999999999887764 45677888888765522
Q ss_pred C-----------ccHHHHHHHHHHHHHHhhc
Q 007918 564 D-----------VDVRFFATQAIQSIDHVMM 583 (585)
Q Consensus 564 ~-----------~~Vr~~a~~al~~l~~~l~ 583 (585)
. ..+|..+.+++..+.+.++
T Consensus 736 ~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~ 766 (861)
T 2bpt_A 736 PENGTLEALDYQIKVLEAVLDAYVGIVAGLH 766 (861)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1 4688999999888876654
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=100.00 E-value=3.3e-34 Score=322.10 Aligned_cols=567 Identities=14% Similarity=0.185 Sum_probs=444.1
Q ss_pred HHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhccccccc-ccCCchHHHHHHHHHHhccccccCCc--------
Q 007918 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGV-------- 81 (585)
Q Consensus 11 i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~-------- 81 (585)
+..+++.+.++++..|..|+..++.++..+++ .....+++.+.. +.|+++.+|..++.+++.++..++..
T Consensus 50 l~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~ 128 (1230)
T 1u6g_C 50 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA 128 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHH
Confidence 67788899999999999999999999988875 455678887777 67888899999999999998776643
Q ss_pred chHHhchHHHhhhhh-chhhHHHHHHHHHHHHHHhhcChh--hHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCCh
Q 007918 82 EHAHVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMRES--DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD 158 (585)
Q Consensus 82 ~~~~~l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~ 158 (585)
.+.+.++|.+...+. ++++.+|..|+.++..+++..+.. ...+.+++.+.....+++..+|..++.+++.++...++
T Consensus 129 ~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~ 208 (1230)
T 1u6g_C 129 NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN 208 (1230)
T ss_dssp HHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH
Confidence 257889999888887 488999999999999999766542 13455777777777888889999999999999988876
Q ss_pred HHHHHHHHHHHhhcC-CCchHHHHHHHHhHHHHHhhhccc--chHHHHHHHHHHhccC--hhHHHHHHHHHHHHhhccCc
Q 007918 159 ILKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEP 233 (585)
Q Consensus 159 ~~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~ 233 (585)
.....+++.+...+. +.++.+|..++.+++.++...+.. .+.+.++|.+...++| +.+|..+..+++.+++.++.
T Consensus 209 ~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~ 288 (1230)
T 1u6g_C 209 IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK 288 (1230)
T ss_dssp --CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH
Confidence 544455555554443 334578999999999999876542 2346788888887777 77999999999999998776
Q ss_pred h--hhhhhhHHHHHHhcc-------------------------------------CCChHHHHHHHHHHHHHHHHhCC--
Q 007918 234 Q--DCVAHILPVIVNFSQ-------------------------------------DKSWRVRYMVANQLYELCEAVGP-- 272 (585)
Q Consensus 234 ~--~~~~~~~~~l~~~~~-------------------------------------d~~~~vR~~~~~~l~~l~~~~~~-- 272 (585)
+ .+.+.++|.+.+.+. |.+|.+|..++.+++.++...+.
T Consensus 289 ~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~ 368 (1230)
T 1u6g_C 289 EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML 368 (1230)
T ss_dssp CCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHH
Confidence 3 356666776655332 23588999999999999986554
Q ss_pred cccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCH---------------------HHHHHhhHHHHHHhccCCcH
Q 007918 273 EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---------------------ELAIQHILPCVKELSSDSSQ 331 (585)
Q Consensus 273 ~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~---------------------~~~~~~i~~~l~~~~~d~~~ 331 (585)
......++|.+...+.|.++.||..++.++..++...+. ..+.+.+++.+.+.++|++|
T Consensus 369 ~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~ 448 (1230)
T 1u6g_C 369 PEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSV 448 (1230)
T ss_dssp HHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCH
Confidence 223456788888889999999999999999998876542 13346677777788999999
Q ss_pred HHHHHHHHHHHhhchhhCH--HHHHHhHHHHHHHhhcCCCh--HHHHHHHHHhHHhhhhhchhH---HhhhHHHHHHHHh
Q 007918 332 HVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFP--DVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVELA 404 (585)
Q Consensus 332 ~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~---~~~~ll~~l~~~~ 404 (585)
.+|..++.+++.++...+. ..+.+.++|.+...++|.++ .+|..++..++.+....|.+. +.+.++|.+...+
T Consensus 449 ~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l 528 (1230)
T 1u6g_C 449 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACV 528 (1230)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999876542 23567899999999999875 999999999999988777653 4467899999999
Q ss_pred cCCChHHHHHHHHHhHHHHHhhCh---------hhHHHHHHHHHHHHc--cCCchHHHHHHHHHHHHHHHHhCHHH--HH
Q 007918 405 EDRHWRVRLAIIEYIPLLASQLGV---------GFFDDKLGALCMQWL--QDKVYSIRDAAANNLKRLAEEFGPEW--AM 471 (585)
Q Consensus 405 ~~~~~~~r~~~~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~~--~~ 471 (585)
.|++|++|..++..+..+++.+|. ..+.+.++|.+...+ .|.+.+||..|+.+++.++...|..+ +.
T Consensus 529 ~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~ 608 (1230)
T 1u6g_C 529 GDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDL 608 (1230)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHH
T ss_pred cccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhH
Confidence 999999999999999999988876 245677899999888 78899999999999999999887653 23
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhc---ChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHH
Q 007918 472 QHITPQVLEMINNPHYLYRMTILRAISLLAPVM---GSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV 548 (585)
Q Consensus 472 ~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~---~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~ 548 (585)
..+++.+...+.+. ..|..++.+++.++... +...+...++|.+...+.++++.+|.+++.+++.++...+....
T Consensus 609 ~~~l~~L~~~l~~e--~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~ 686 (1230)
T 1u6g_C 609 PNTLQIFLERLKNE--ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLT 686 (1230)
T ss_dssp HHHHHHHHHHTTSS--SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHhccc--hhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCC
Confidence 55666666655543 47889999999988643 23457799999999999999999999999999999988765333
Q ss_pred HhhHHHHHHH---hcCCCCccHHHHHHHHHHHHHH
Q 007918 549 EKTIRPCLVE---LTEDPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 549 ~~~~~~~l~~---l~~D~~~~Vr~~a~~al~~l~~ 580 (585)
.+.+.+.+.. +++|.|.+++..+..++..+.+
T Consensus 687 ~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~ 721 (1230)
T 1u6g_C 687 AAMIDAVLDELPPLISESDMHVSQMAISFLTTLAK 721 (1230)
T ss_dssp HHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHH
Confidence 3455555544 4568888888888888877754
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=1.1e-31 Score=292.83 Aligned_cols=573 Identities=14% Similarity=0.156 Sum_probs=424.0
Q ss_pred HHHHHHHhcCh--hHHHHHHHhhhHHHHHHhhChhh---hhhhccccccc-ccCC--chHHHHHHHHHHhccccccCCc-
Q 007918 11 IAVLIDELKND--DIQLRLNSIRRLSTIARALGEER---TRKELIPFLSE-NNDD--DDEVLLAMAEELGVFIPYVGGV- 81 (585)
Q Consensus 11 i~~l~~~l~~~--~~~~R~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~-~~d~--~~~vr~~~~~~l~~l~~~~~~~- 81 (585)
+..+++.+.++ ++..|..+++.++.++...+++. ....+++.+.+ +.++ ++++|..+.++++.++.+++..
T Consensus 130 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~ 209 (876)
T 1qgr_A 130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF 209 (876)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888889998 99999999999999988765432 23456666666 4554 6899999999999887654421
Q ss_pred ---chHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChh--hHHh-hHHHHHHHhhcCcCccchhhHHhhhHhhcCC
Q 007918 82 ---EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES--DLVD-WYIPLVKRLAAGEWFTARVSACGLFHIAYPS 155 (585)
Q Consensus 82 ---~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~-~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~ 155 (585)
.....+++.+..++.++++.+|..+.+++..++...+.. .... .+++.+.....+.++.+|..++..+..+...
T Consensus 210 ~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~ 289 (876)
T 1qgr_A 210 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (876)
T ss_dssp TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 112346777777788889999999999999999876542 1223 6777777777777788898888777665432
Q ss_pred C---------------------Ch---HHHHHHHHHHHhhcC-------CCchHHHHHHHHhHHHHHhhhcccchHHHHH
Q 007918 156 A---------------------PD---ILKTELRSIYTQLCQ-------DDMPMVRRSAASNLGKFAATVEPAHLKTDIM 204 (585)
Q Consensus 156 ~---------------------~~---~~~~~l~~~l~~l~~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 204 (585)
. .. .+...+++.+...+. |+++.+|.++..+++.++...+ +...+.++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~l 368 (876)
T 1qgr_A 290 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVL 368 (876)
T ss_dssp HHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG-GGGHHHHH
T ss_pred HHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc-HhhHHHHH
Confidence 1 01 133567777766653 4568999999999999999886 45677888
Q ss_pred HHHHHhccC--hhHHHHHHHHHHHHhhccCch---hhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCc----cc
Q 007918 205 SIFEDLTQD--DSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PT 275 (585)
Q Consensus 205 ~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~----~~ 275 (585)
|.+...++| +.+|..++.+++.+++..+++ .+.+.++|.+...++|+++.||..++.+++.++..++.. ..
T Consensus 369 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 448 (876)
T 1qgr_A 369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448 (876)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH
Confidence 888887777 779999999999999877632 355678888899999999999999999999999987642 22
Q ss_pred ccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhC----------------HHHHHHhhHHHHHHhccCC---cHH----
Q 007918 276 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN----------------PELAIQHILPCVKELSSDS---SQH---- 332 (585)
Q Consensus 276 ~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~----------------~~~~~~~i~~~l~~~~~d~---~~~---- 332 (585)
...+++.+...+.|+ +.||..++.++..++...+ -..+.+.++|.+...+.+. ++.
T Consensus 449 l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~ 527 (876)
T 1qgr_A 449 LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSS 527 (876)
T ss_dssp HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHH
Confidence 346788888888885 8899999999999887654 1123356666666655432 223
Q ss_pred ----------------------------------------------------HHHHHHHHHHhhchhhC-HH--HHHHhH
Q 007918 333 ----------------------------------------------------VRSALASVIMGMAPLLG-KD--ATIEQL 357 (585)
Q Consensus 333 ----------------------------------------------------vr~~a~~~l~~l~~~~~-~~--~~~~~l 357 (585)
+|..++.+++.++..+| .. .+.+.+
T Consensus 528 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l 607 (876)
T 1qgr_A 528 AYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVV 607 (876)
T ss_dssp HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHH
T ss_pred HHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHH
Confidence 34455555555555555 32 234567
Q ss_pred HHHHHHhhcCCC--hHHHHHHHHHhHHhhhhhchh--HHhhhHHHHHHHHhcCC-ChHHHHHHHHHhHHHHHhhChhh--
Q 007918 358 LPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF-- 430 (585)
Q Consensus 358 ~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~~~-- 430 (585)
+|.+...+++.. +.+|..++.+++.++...|.. .+.+.++|.+...+.+. ++.+|..++.+++.+....|...
T Consensus 608 ~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 687 (876)
T 1qgr_A 608 MASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIP 687 (876)
T ss_dssp HHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 777888887764 479999999999999877653 33466788888888876 89999999999999998887543
Q ss_pred HHHHHHHHHHHHccC--CchHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhcCcc-----------hHHHHHHHH
Q 007918 431 FDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPH-----------YLYRMTILR 495 (585)
Q Consensus 431 ~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~~~~-----------~~~R~~a~~ 495 (585)
+.+.+++.+...+.+ .+.++|..++.+++.++..+|.++ +.+.++|.+.+.+.++. ..+|..++.
T Consensus 688 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~ 767 (876)
T 1qgr_A 688 FCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLE 767 (876)
T ss_dssp HHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHH
Confidence 346788888888876 467899999999999999888764 34667777777665432 379999999
Q ss_pred HHHHhhhhcCh---------H---HHHhcHHHHHHhhcCCC--CchHHHHHHHHHHHHHhhhch-H--HH-HhhHHHHHH
Q 007918 496 AISLLAPVMGS---------E---ITCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQ-S--MV-EKTIRPCLV 557 (585)
Q Consensus 496 ~l~~l~~~~~~---------~---~~~~~i~~~l~~~l~d~--~~~vR~~~~~~l~~l~~~~~~-~--~~-~~~~~~~l~ 557 (585)
++..++..++. . .+.+.+++.+.....|+ +..||..++.+++.++...+. . .+ .+.+++.+.
T Consensus 768 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll 847 (876)
T 1qgr_A 768 AYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELL 847 (876)
T ss_dssp HHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHH
Confidence 99988776542 1 13456666666666777 789999999999999998876 2 22 345666666
Q ss_pred H-hcCCCCccHHHHHHHHHHHHHHhhcCC
Q 007918 558 E-LTEDPDVDVRFFATQAIQSIDHVMMSS 585 (585)
Q Consensus 558 ~-l~~D~~~~Vr~~a~~al~~l~~~l~~~ 585 (585)
. .+.|+++++|..|.+|++.+.++-.+|
T Consensus 848 ~~~l~~~~~~~r~~a~~a~~~~~~~~~~~ 876 (876)
T 1qgr_A 848 TEGRRSKTNKAKTLARWATKELRKLKNQA 876 (876)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHhhcCCHhHHHHHHHHHHHHHHhhcCC
Confidence 6 788999999999999999999886654
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=2.9e-32 Score=297.42 Aligned_cols=568 Identities=16% Similarity=0.160 Sum_probs=428.1
Q ss_pred HHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhccccccc-ccCC--chHHHHHHHHHHhccccccCC---cchHHh
Q 007918 13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDD--DDEVLLAMAEELGVFIPYVGG---VEHAHV 86 (585)
Q Consensus 13 ~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~--~~~vr~~~~~~l~~l~~~~~~---~~~~~~ 86 (585)
.+++.+.++++.. ..++..++.++...++...+.+++|.+.+ +.+. ++.+|..+...++.+....+. ..+.+.
T Consensus 94 ~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ 172 (876)
T 1qgr_A 94 YVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNE 172 (876)
T ss_dssp HHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHH
T ss_pred HHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHH
Confidence 3777788888878 88899999999887776678899999988 6666 789999999999988765432 234566
Q ss_pred chHHHhhhhhch--hhHHHHHHHHHHHHHHhhcChh----hHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCCh--
Q 007918 87 LLPPLETLCTVE--ETCVRDKAVESLCRIGSQMRES----DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPD-- 158 (585)
Q Consensus 87 l~~~l~~l~~~~--~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~-- 158 (585)
+++.+...+.++ ++.+|..+.+++..++..++.. .....+++.+.....++++.+|..++.++..+....+.
T Consensus 173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~ 252 (876)
T 1qgr_A 173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM 252 (876)
T ss_dssp HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGC
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHH
Confidence 777777777776 6899999999999988765432 12245788888887788889999999999888765544
Q ss_pred -HHHH-HHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhc------------------c--cc---hHHHHHHHHHHhcc-
Q 007918 159 -ILKT-ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVE------------------P--AH---LKTDIMSIFEDLTQ- 212 (585)
Q Consensus 159 -~~~~-~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~------------------~--~~---~~~~l~~~l~~l~~- 212 (585)
.+.. .+++.+.....+.++.+|..++..+..++.... . .. ..+.++|.+...+.
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~ 332 (876)
T 1qgr_A 253 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK 332 (876)
T ss_dssp HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhc
Confidence 3444 788888888889999999999999988876421 0 00 12455665555442
Q ss_pred ------C--hhHHHHHHHHHHHHhhccCchhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCc---ccccchHH
Q 007918 213 ------D--DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVP 281 (585)
Q Consensus 213 ------d--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~l~~ 281 (585)
+ +.+|..+..++..++..+++ ...+.++|.+...+.|++|.+|..++.+++.++...+.+ .....++|
T Consensus 333 ~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~ 411 (876)
T 1qgr_A 333 QDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP 411 (876)
T ss_dssp CCSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHHHCcH-hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2 56999999999999998874 456778899999999999999999999999988665422 12246788
Q ss_pred HHHHhccCChHHHHHHHHHHHHHHHHhhCHH----HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhC--------
Q 007918 282 AYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-------- 349 (585)
Q Consensus 282 ~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~-------- 349 (585)
.+...++|+++.||..++.+++.++...+.. .+.+.+++.+...+.|+ ++||..++.+++.++...+
T Consensus 412 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~ 490 (876)
T 1qgr_A 412 TLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADD 490 (876)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccc
Confidence 8999999999999999999999999886542 34577888888888885 9999999999999887654
Q ss_pred --------HHHHHHhHHHHHHHhhcCC---ChHHHHHHHH----------------------------------------
Q 007918 350 --------KDATIEQLLPIFLSLLKDE---FPDVRLNIIS---------------------------------------- 378 (585)
Q Consensus 350 --------~~~~~~~l~~~l~~~l~d~---~~~vr~~a~~---------------------------------------- 378 (585)
-..+.+.++|.+...+.+. +..+|..+.+
T Consensus 491 ~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 570 (876)
T 1qgr_A 491 QEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQS 570 (876)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCS
T ss_pred cccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 1234567778777777653 2345544444
Q ss_pred ----------------HhHHhhhhhc-hh--HHhhhHHHHHHHHhcCCC--hHHHHHHHHHhHHHHHhhChhh--HHHHH
Q 007918 379 ----------------KLDQVNQVIG-ID--LLSQSLLPAIVELAEDRH--WRVRLAIIEYIPLLASQLGVGF--FDDKL 435 (585)
Q Consensus 379 ----------------~l~~l~~~~~-~~--~~~~~ll~~l~~~~~~~~--~~~r~~~~~~l~~l~~~~~~~~--~~~~l 435 (585)
+++.++..+| .. .+.+.++|.+...+++.+ +.+|..++.+++.++...|..+ +.+.+
T Consensus 571 ~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~ 650 (876)
T 1qgr_A 571 TSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAF 650 (876)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4444444444 21 122456677777777654 5789999999999998776543 34678
Q ss_pred HHHHHHHccCC-chHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhcC--cchHHHHHHHHHHHHhhhhcChHH--
Q 007918 436 GALCMQWLQDK-VYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSEI-- 508 (585)
Q Consensus 436 ~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~~--~~~~~R~~a~~~l~~l~~~~~~~~-- 508 (585)
+|.+...+.+. ++.||..++.+++.++...|... +.+.+++.+.+.+.+ .+..+|..++.+++.++..+|.++
T Consensus 651 ~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~ 730 (876)
T 1qgr_A 651 KPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKK 730 (876)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHH
Confidence 89999999887 89999999999999999887543 346788888888876 457899999999999998887663
Q ss_pred HHhcHHHHHHhhcCCCC-----------chHHHHHHHHHHHHHhhhch---------H---HHHhhHHHHHHHhcCCC--
Q 007918 509 TCSRLLPVVINASKDRV-----------PNIKFNVAKVLQSLIPIVDQ---------S---MVEKTIRPCLVELTEDP-- 563 (585)
Q Consensus 509 ~~~~i~~~l~~~l~d~~-----------~~vR~~~~~~l~~l~~~~~~---------~---~~~~~~~~~l~~l~~D~-- 563 (585)
+.+.++|.+...++++. ..+|..++.++..++...+. . .+.+.+++.+..+..|+
T Consensus 731 ~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 810 (876)
T 1qgr_A 731 YLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDH 810 (876)
T ss_dssp GHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46788888888776542 27999999999988776543 1 23456667777766777
Q ss_pred CccHHHHHHHHHHHHHHhhc
Q 007918 564 DVDVRFFATQAIQSIDHVMM 583 (585)
Q Consensus 564 ~~~Vr~~a~~al~~l~~~l~ 583 (585)
+..||..|..+++.+.....
T Consensus 811 ~~~vr~~a~~~l~~l~~~~~ 830 (876)
T 1qgr_A 811 TDGVVACAAGLIGDLCTAFG 830 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHhC
Confidence 67899999999999987663
No 11
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.94 E-value=1.4e-23 Score=215.82 Aligned_cols=502 Identities=15% Similarity=0.136 Sum_probs=316.3
Q ss_pred cHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhccccccc-ccCCchHHHHHHHHHHhccccccCCcchHHhch
Q 007918 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLL 88 (585)
Q Consensus 10 ~i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~ 88 (585)
.+..+.+.++++|...|..++..+-.+ ...|.+. ..+.+.+.. +.+++.++|+.+.-.+..+++. .++....+.
T Consensus 14 e~~~i~~~L~~~~~~~k~~~~~kli~~-~~~G~d~--~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~e~~~l~~ 88 (591)
T 2vgl_B 14 EIFELKAELNNEKKEKRKEAVKKVIAA-MTVGKDV--SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS--QPDMAIMAV 88 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHH-HHTTCCC--GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--SHHHHHTTH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHH-HHCCCCh--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--CchHHHHHH
Confidence 488999999999999999988777643 3456432 234444444 6678899998887777776552 355566677
Q ss_pred HHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChHHH-HHHHHH
Q 007918 89 PPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK-TELRSI 167 (585)
Q Consensus 89 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~-~~l~~~ 167 (585)
+.+.+-++++++.+|..|+.+++.+. ...+...+.|.+.++..|+++.+|..|+.++..++...++... ..+++.
T Consensus 89 n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~ 164 (591)
T 2vgl_B 89 NSFVKDCEDPNPLIRALAVRTMGCIR----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDS 164 (591)
T ss_dssp HHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHH
Confidence 88888889999999999988887764 4456677888888999999999999999999999886554332 478899
Q ss_pred HHhhcCCCchHHHHHHHHhHHHHHhhhccc---chHHHHHH-HHHHhccC-hhHHHHHHHHHHHHhhccCchhhhhhhHH
Q 007918 168 YTQLCQDDMPMVRRSAASNLGKFAATVEPA---HLKTDIMS-IFEDLTQD-DSVRLLAVEGCAALGKLLEPQDCVAHILP 242 (585)
Q Consensus 168 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~-~l~~l~~d-~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 242 (585)
+..+++|+++.|+..|+.+|+.++...+.. ......++ ++..+... +..+...+..+..+... .......+++
T Consensus 165 l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~--~~~~~~~~l~ 242 (591)
T 2vgl_B 165 LRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK--DDREAQSICE 242 (591)
T ss_dssp HHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC--SHHHHHHHHH
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC--ChHHHHHHHH
Confidence 999999999999999999999988754321 11122222 22222222 45666666665544421 1233456788
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHHHhC--Ccccc---cchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHh
Q 007918 243 VIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTR---MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH 317 (585)
Q Consensus 243 ~l~~~~~d~~~~vR~~~~~~l~~l~~~~~--~~~~~---~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 317 (585)
.+..++++.++.|+..++.++..+....+ .+... ..+.+.+..++ ++++++|..++.++..+....+. .+.+.
T Consensus 243 ~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~-~~~~~ 320 (591)
T 2vgl_B 243 RVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPE-ILKQE 320 (591)
T ss_dssp HHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCS-TTTTC
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChH-HHHHH
Confidence 88888889999999999999887654331 11111 23445555554 46788999999999988875432 11111
Q ss_pred hHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHH
Q 007918 318 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 397 (585)
Q Consensus 318 i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll 397 (585)
+. .+....+|+ +.+|..++..+..++..-+ .+.+++.+..++.+.+.++|..++.+++.++..++.. .+.++
T Consensus 321 ~~-~~~~~~~d~-~~Ir~~al~~L~~l~~~~n----v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~--~~~~v 392 (591)
T 2vgl_B 321 IK-VFFVKYNDP-IYVKLEKLDIMIRLASQAN----IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS--AERCV 392 (591)
T ss_dssp TT-TTSCCTTSC-HHHHHHHHHHHHHTCCSST----HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH--HHHHH
T ss_pred HH-hheeccCCh-HHHHHHHHHHHHHHCChhh----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH--HHHHH
Confidence 11 122222344 8888888888877764322 3456666667777777788888888877777665432 14566
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHcc-CCchHHHHHHHHHHHHHHHHhCHHHHHhhhHH
Q 007918 398 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAMQHITP 476 (585)
Q Consensus 398 ~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~ 476 (585)
+.+.+++.+....++..++..+..+....+.. ...+++.+...+. +..+.+|..++..+|.++..... ...++.
T Consensus 393 ~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~--~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~---~~~~l~ 467 (591)
T 2vgl_B 393 STLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK--YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN---ADELLE 467 (591)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS--CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT---HHHHHH
T ss_pred HHHHHHHcccchHHHHHHHHHHHHHHHHCcch--HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC---HHHHHH
Confidence 66666666666666666666666555443321 1234455555554 34455666666666655443321 133444
Q ss_pred HHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhh-cCC-CCchHHHHHHHHHHHH
Q 007918 477 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINA-SKD-RVPNIKFNVAKVLQSL 539 (585)
Q Consensus 477 ~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~-l~d-~~~~vR~~~~~~l~~l 539 (585)
.+.+.+.+.+..+|..++.++..+....+.. ....+..++.. ..| .+++||..+...+..+
T Consensus 468 ~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~--~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 468 SFLEGFHDESTQVQLTLLTAIVKLFLKKPSE--TQELVQQVLSLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp HHSTTCSSSCHHHHHHHHHHHHHHHTTCCST--THHHHHHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHhcCchH--HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Confidence 4554444555566666666666655443321 11222323332 233 4556666665555444
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.93 E-value=8.2e-23 Score=205.80 Aligned_cols=384 Identities=14% Similarity=0.138 Sum_probs=289.2
Q ss_pred cCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccChhHHHHHHHHHHHHhhccC--------------chhhh
Q 007918 172 CQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDSVRLLAVEGCAALGKLLE--------------PQDCV 237 (585)
Q Consensus 172 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~vr~~a~~~l~~l~~~~~--------------~~~~~ 237 (585)
+.+++..+|+.|...|..+.... .+.+...+..++..--.++.+|..|...+.++..... ++...
T Consensus 10 ~~s~d~~~r~~Ae~~L~~~~~~~-~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~ 88 (462)
T 1ibr_B 10 TVSPDRLELEAAQKFLERAAVEN-LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANAR 88 (462)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHH
Confidence 44677889999988888865421 1233344444443211125689999988888864321 12234
Q ss_pred hhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCC--hHHHHHHHHHHHHHHHHhhCHH---
Q 007918 238 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN--EAEVRIAAAGKVTKFCRILNPE--- 312 (585)
Q Consensus 238 ~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~--~~~vr~~a~~~l~~l~~~~~~~--- 312 (585)
..+...+...+.+.++.+ ..++.+++.++...........++|.+.+.+.++ ++.+|..++..++.+++...++
T Consensus 89 ~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~ 167 (462)
T 1ibr_B 89 REVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQ 167 (462)
T ss_dssp HHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTG
T ss_pred HHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhH
Confidence 556666777778888888 8999999999987644334568999999999888 8999999999999999876332
Q ss_pred HHHHhhHHHHHHhccCC--cHHHHHHHHHHHHhhchhhCH----HHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhh
Q 007918 313 LAIQHILPCVKELSSDS--SQHVRSALASVIMGMAPLLGK----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 386 (585)
Q Consensus 313 ~~~~~i~~~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 386 (585)
.+.+.+++.+...++|+ ++.||..++++++.+...++. ....+.+++.+...+.+.++.+|..++.++..+...
T Consensus 168 ~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~ 247 (462)
T 1ibr_B 168 DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL 247 (462)
T ss_dssp GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 23456788888888888 799999999999987654432 112345678888888899999999999999999877
Q ss_pred hchh--HHhh-hHHHHHHHHhcCCChHHHHHHHHHhHHHHHhh-------------------C-hhh---HHHHHHHHHH
Q 007918 387 IGID--LLSQ-SLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-------------------G-VGF---FDDKLGALCM 440 (585)
Q Consensus 387 ~~~~--~~~~-~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~-------------------~-~~~---~~~~l~~~l~ 440 (585)
.+.. .+.+ .+++.+...+++.+..+|..+++.+..+++.. . ... +.+.++|.+.
T Consensus 248 ~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~ 327 (462)
T 1ibr_B 248 YYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT 327 (462)
T ss_dssp CGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHH
Confidence 6542 2334 78888888888999999999999998887652 0 111 2356788887
Q ss_pred HHcc-------CCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChH---HHH
Q 007918 441 QWLQ-------DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITC 510 (585)
Q Consensus 441 ~~l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~---~~~ 510 (585)
..+. |.+|.+|.+|..+++.++..+| +...+.++|.+...+++++|.+|.+++.+++.++..++.+ ...
T Consensus 328 ~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l 406 (462)
T 1ibr_B 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406 (462)
T ss_dssp HHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT
T ss_pred HHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 7774 3568999999999999999998 4456788999999999999999999999999999866532 245
Q ss_pred hcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH----HHHhhHHHHHHH
Q 007918 511 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----MVEKTIRPCLVE 558 (585)
Q Consensus 511 ~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~----~~~~~~~~~l~~ 558 (585)
+.++|.+...++|+++.||..++++++.+....++. .+...+++.|..
T Consensus 407 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~ 458 (462)
T 1ibr_B 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 458 (462)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 789999999999999999999999999999887653 234445555443
No 13
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.91 E-value=1.6e-22 Score=203.72 Aligned_cols=375 Identities=13% Similarity=0.062 Sum_probs=276.5
Q ss_pred HHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhcccccccccCCchHHHHHHHHHHhccccccC-----------
Q 007918 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVG----------- 79 (585)
Q Consensus 11 i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~l~~~~~----------- 79 (585)
+..++..+.++|...|..|...|.++...- .......++..+.. .+.++++|..++..|.+++..-.
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~-~~~~~~~L~~il~~-~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~ 80 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVEN-LPTFLVELSRVLAN-PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHhccccchHHHHHHHhhh
Confidence 567888899999999999999998865421 12222334444432 23478999999999988754210
Q ss_pred ---CcchHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCc--CccchhhHHhhhHhhcC
Q 007918 80 ---GVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGE--WFTARVSACGLFHIAYP 154 (585)
Q Consensus 80 ---~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~--~~~~r~~a~~~l~~~~~ 154 (585)
.++....+-..+...+.++++.+ ..+..+++.++....++..++.++|.+.....++ ++.+|..++.+++.++.
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (462)
T 1ibr_B 81 LAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (462)
T ss_dssp HTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 12223334454555667777888 8899999999887655545678999998888887 78899999999988876
Q ss_pred CCC----hHHHHHHHHHHHhhcCCC--chHHHHHHHHhHHHHHhhhcc----cchHHHHHHHHHHhccC--hhHHHHHHH
Q 007918 155 SAP----DILKTELRSIYTQLCQDD--MPMVRRSAASNLGKFAATVEP----AHLKTDIMSIFEDLTQD--DSVRLLAVE 222 (585)
Q Consensus 155 ~~~----~~~~~~l~~~l~~l~~d~--~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~l~~d--~~vr~~a~~ 222 (585)
... ..+...+++.+..+++|+ ++.||..++.+++.+...... ....+.+++.+.....+ +.+|..+++
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~ 239 (462)
T 1ibr_B 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQ 239 (462)
T ss_dssp HSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred hCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 542 246678999999999988 799999999999986654321 12335567777766666 669999999
Q ss_pred HHHHHhhccCc--hhhhh-hhHHHHHHhccCCChHHHHHHHHHHHHHHHHh-------C-----------C--ccc---c
Q 007918 223 GCAALGKLLEP--QDCVA-HILPVIVNFSQDKSWRVRYMVANQLYELCEAV-------G-----------P--EPT---R 276 (585)
Q Consensus 223 ~l~~l~~~~~~--~~~~~-~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~-------~-----------~--~~~---~ 276 (585)
++..+++..++ ..+.. .+++.+...+.|.++.||..+++.+..++... . . ... .
T Consensus 240 ~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (462)
T 1ibr_B 240 NLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL 319 (462)
T ss_dssp HHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh
Confidence 99999987765 24455 78888888888999999999999999888753 0 0 000 1
Q ss_pred cchHHHHHHhcc-------CChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhC
Q 007918 277 MDLVPAYVRLLR-------DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG 349 (585)
Q Consensus 277 ~~l~~~l~~ll~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~ 349 (585)
..++|.+.+.+. |.+|.+|.++..+++.++..++. ...+.++|.+...+++++|++|.+++.+++.++...+
T Consensus 320 ~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~ 398 (462)
T 1ibr_B 320 QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE 398 (462)
T ss_dssp HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc
Confidence 346677766663 23578999999999999988884 4557788888888889999999999999999887554
Q ss_pred HH---HHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhch
Q 007918 350 KD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 389 (585)
Q Consensus 350 ~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 389 (585)
.+ ...+.++|.+...++|+++.||..|+.+++.++..++.
T Consensus 399 ~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 399 PSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp TTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 22 23466888888888888888888888888888887765
No 14
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.91 E-value=4.7e-22 Score=203.79 Aligned_cols=474 Identities=14% Similarity=0.085 Sum_probs=275.0
Q ss_pred HhccccccCCcchHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChh-hHH--hhHHHHHHHhh-cCcCccchhhHH
Q 007918 71 LGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES-DLV--DWYIPLVKRLA-AGEWFTARVSAC 146 (585)
Q Consensus 71 l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~-~~~--~~l~~~l~~l~-~~~~~~~r~~a~ 146 (585)
+++|.+|.++++.....+|.+..++.++++.+|..|..+|..++..-+.. .+. ...++.+.++. .++++.+|..++
T Consensus 2 ~~~l~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~ 81 (529)
T 1jdh_A 2 VVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTA 81 (529)
T ss_dssp CCSCC----------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred hHHHhhcCchhhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHH
Confidence 46777888877777778888888999999999999999999998644321 111 12344444433 334566677777
Q ss_pred hhhHhhcCCCChH---HHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccChhHHHHHHHH
Q 007918 147 GLFHIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDSVRLLAVEG 223 (585)
Q Consensus 147 ~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~vr~~a~~~ 223 (585)
..+..+....... .....++.+..+++++++.++..++.+|.+++...... ...
T Consensus 82 ~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~--~~~--------------------- 138 (529)
T 1jdh_A 82 GTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA--KMA--------------------- 138 (529)
T ss_dssp HHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTH--HHH---------------------
T ss_pred HHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcch--HHH---------------------
Confidence 7776664431110 11235556666666666666666666666665532110 000
Q ss_pred HHHHhhccCchhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhC---CcccccchHHHHHHhccCCh-HHHHHHHH
Q 007918 224 CAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNE-AEVRIAAA 299 (585)
Q Consensus 224 l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll~d~~-~~vr~~a~ 299 (585)
......+|.+.+++.++++++|..++.++..++..-. ........++.+..++.+.+ ..++..++
T Consensus 139 -----------i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~ 207 (529)
T 1jdh_A 139 -----------VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTS 207 (529)
T ss_dssp -----------HHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHH
T ss_pred -----------HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHH
Confidence 0012345555566666666666666666665543100 00111234556666665444 33445555
Q ss_pred HHHHHHHHhhCHH--HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHH
Q 007918 300 GKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNII 377 (585)
Q Consensus 300 ~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~ 377 (585)
..+..++..-... ......++.+..++.++++.++..++..+.+++...+.......++|.+..++.+.++++|..++
T Consensus 208 ~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~ 287 (529)
T 1jdh_A 208 RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAA 287 (529)
T ss_dssp HHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHH
Confidence 6665555321111 12234566777777777777777777777777654432222345667777777777777887777
Q ss_pred HHhHHhhhhhc--hh-HHhhhHHHHHHHHhcC--CChHHHHHHHHHhHHHHHhhCh------hhHHHHHHHHHHHHccCC
Q 007918 378 SKLDQVNQVIG--ID-LLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGV------GFFDDKLGALCMQWLQDK 446 (585)
Q Consensus 378 ~~l~~l~~~~~--~~-~~~~~ll~~l~~~~~~--~~~~~r~~~~~~l~~l~~~~~~------~~~~~~l~~~l~~~l~d~ 446 (585)
.+|+.++..-. .. ......+|.+..++.+ .++.+|..++.+++.+....+. .......+|.+..++.++
T Consensus 288 ~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~ 367 (529)
T 1jdh_A 288 GILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP 367 (529)
T ss_dssp HHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTT
T ss_pred HHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccc
Confidence 77777765311 11 1122456666666653 3467777777777776533211 111223466777777766
Q ss_pred c-hHHHHHHHHHHHHHHHHhCH--HHHHhhhHHHHHhhhcCcchHHHHHHH----------------------HHHHHhh
Q 007918 447 V-YSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEMINNPHYLYRMTIL----------------------RAISLLA 501 (585)
Q Consensus 447 ~-~~vr~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~l~~~~~~~R~~a~----------------------~~l~~l~ 501 (585)
. +.+|..++.+++.++..... ......++|.+.+++.++++.+|..+. .++..++
T Consensus 368 ~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~ 447 (529)
T 1jdh_A 368 SHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA 447 (529)
T ss_dssp CCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHh
Confidence 5 57788777777777642111 122345677777777666666665444 4444444
Q ss_pred hhcCh--HHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc--hHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHH
Q 007918 502 PVMGS--EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQS 577 (585)
Q Consensus 502 ~~~~~--~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~--~~~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~ 577 (585)
..... .......+|.+..++.|+++++|..++.+++.+...-. ........++.|..++.|++++||..|.+++..
T Consensus 448 ~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~ 527 (529)
T 1jdh_A 448 RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 527 (529)
T ss_dssp TSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred cCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 32111 11235667999999999999999999999999874311 112234567899999999999999999999988
Q ss_pred H
Q 007918 578 I 578 (585)
Q Consensus 578 l 578 (585)
|
T Consensus 528 l 528 (529)
T 1jdh_A 528 M 528 (529)
T ss_dssp H
T ss_pred c
Confidence 6
No 15
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.91 E-value=7e-20 Score=188.51 Aligned_cols=569 Identities=12% Similarity=0.083 Sum_probs=389.9
Q ss_pred HHHHHHHhcC-hhHHHHHHHhhhHHHHHHhhChhhhh---hhc-cccccc-ccCCchHHHHHHHHHHhcccccc------
Q 007918 11 IAVLIDELKN-DDIQLRLNSIRRLSTIARALGEERTR---KEL-IPFLSE-NNDDDDEVLLAMAEELGVFIPYV------ 78 (585)
Q Consensus 11 i~~l~~~l~~-~~~~~R~~a~~~l~~~~~~~~~~~~~---~~l-~~~l~~-~~d~~~~vr~~~~~~l~~l~~~~------ 78 (585)
+..+..-+++ .|++....|++.++.++..- ..+.. +++ .|.+.. +..+++++-.+++..+..+...+
T Consensus 51 ~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (810)
T 3now_A 51 IAKVASLTKVEKDQDIYVNMVHLVAALCENS-VERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNK 129 (810)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSS
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhcc-HHHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccc
Confidence 4455555666 78999999999999998632 12222 111 244444 33456666666666655443221
Q ss_pred --CCcc---------hHHhchHHHhhhhhchh--hHHHHHHHHHHHHHHhhcCh---hhHHhh-HHHHHHHhhcC-c---
Q 007918 79 --GGVE---------HAHVLLPPLETLCTVEE--TCVRDKAVESLCRIGSQMRE---SDLVDW-YIPLVKRLAAG-E--- 137 (585)
Q Consensus 79 --~~~~---------~~~~l~~~l~~l~~~~~--~~vr~~a~~~l~~l~~~~~~---~~~~~~-l~~~l~~l~~~-~--- 137 (585)
.+++ ....++..|..++.+.. ...|+.++..|...+..-.. +.+... =+..+.+.... +
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~ 209 (810)
T 3now_A 130 PDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYK 209 (810)
T ss_dssp TTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSC
T ss_pred cccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCcccc
Confidence 1222 12334444555555543 66888887777665533321 111111 11111122211 0
Q ss_pred -------CccchhhHHhhhHhhcCCCC-----hHHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcc---cch-HH
Q 007918 138 -------WFTARVSACGLFHIAYPSAP-----DILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHL-KT 201 (585)
Q Consensus 138 -------~~~~r~~a~~~l~~~~~~~~-----~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~-~~ 201 (585)
....|..+..++..++..+. +.+.+.+-.++...+..++..-+..++.++..+...... ..+ .+
T Consensus 210 ~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~ 289 (810)
T 3now_A 210 YESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVARE 289 (810)
T ss_dssp CSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTT
T ss_pred ccccCCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhcc
Confidence 24679999999999999887 335566667777777778888888888888888764321 111 23
Q ss_pred HHHHHHHHhccC--hhHHHHHHHHHHHHhhccCc-hhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCc----c
Q 007918 202 DIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----P 274 (585)
Q Consensus 202 ~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~----~ 274 (585)
-.+|.+..++.+ +.++..|+.++...+..-.. +...+.-.|.+..++++++..+|..++.+|.+++...+.+ .
T Consensus 290 G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~ 369 (810)
T 3now_A 290 GILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRP 369 (810)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCS
T ss_pred chHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccc
Confidence 345666666655 56899999999998765221 2223333489999999888999999999998887543311 1
Q ss_pred c----ccchHHHHHHhccCC--hHHHHHHHHHHHHHHHHhhCHH-HHH--HhhHHHHHHhccCCcHHHHHHHHHHHHhhc
Q 007918 275 T----RMDLVPAYVRLLRDN--EAEVRIAAAGKVTKFCRILNPE-LAI--QHILPCVKELSSDSSQHVRSALASVIMGMA 345 (585)
Q Consensus 275 ~----~~~l~~~l~~ll~d~--~~~vr~~a~~~l~~l~~~~~~~-~~~--~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~ 345 (585)
. ...+++.+.+++.++ ++++|..++++|..++...... .+. ..++|.+..++++++..++..+...+++++
T Consensus 370 ~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt 449 (810)
T 3now_A 370 FGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLC 449 (810)
T ss_dssp STTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHT
T ss_pred hhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHc
Confidence 1 235788899998887 7899999999999997542211 111 357888999999889999999999999998
Q ss_pred hhhC-----------------------------------HHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchh
Q 007918 346 PLLG-----------------------------------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 390 (585)
Q Consensus 346 ~~~~-----------------------------------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 390 (585)
.... ......-.+|.+..++.++++.+|+.|+++|+.++..-...
T Consensus 450 ~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r 529 (810)
T 3now_A 450 NAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELR 529 (810)
T ss_dssp TCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred CCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 7431 01112347899999999999999999999999998542211
Q ss_pred --HHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhH-----HHHHHHHHHHHccCC-chHHHHHHHHHHHHHH
Q 007918 391 --LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-----DDKLGALCMQWLQDK-VYSIRDAAANNLKRLA 462 (585)
Q Consensus 391 --~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~-----~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~ 462 (585)
......+|.|..++.+.+...|..++.++..++....+... ....+|.+..++..+ ....+..|+.+|..++
T Consensus 530 ~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa 609 (810)
T 3now_A 530 GKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLA 609 (810)
T ss_dssp HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 22346789999999999999999999999998865443321 123678888888754 4445667899999987
Q ss_pred HHhC---HHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcCh-HHHH--hcHHHHHHhhcCCCCchHHHHHHHHH
Q 007918 463 EEFG---PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-EITC--SRLLPVVINASKDRVPNIKFNVAKVL 536 (585)
Q Consensus 463 ~~~~---~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~-~~~~--~~i~~~l~~~l~d~~~~vR~~~~~~l 536 (585)
..-. ........+|.+..++.+++..+|..|+.++++++..-.. ..+. ...++.|+.++..++..+|..++++|
T Consensus 610 ~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~AL 689 (810)
T 3now_A 610 SMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGAL 689 (810)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6321 1123456789999999999999999999999999863221 1122 35789999999999999999999999
Q ss_pred HHHHhhhch--HH-HH-hhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007918 537 QSLIPIVDQ--SM-VE-KTIRPCLVELTEDPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 537 ~~l~~~~~~--~~-~~-~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~ 580 (585)
+.+....+. .. +. ...+|.|..++.+.+.++|..|.+++..+..
T Consensus 690 anLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 690 AIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 999874222 22 33 4688999999999999999999999988764
No 16
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.91 E-value=1.3e-21 Score=207.20 Aligned_cols=512 Identities=12% Similarity=0.044 Sum_probs=346.0
Q ss_pred HHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhccccccc-ccCCchHHHHHHHHHHhccccccCCcc-h--HHh
Q 007918 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVE-H--AHV 86 (585)
Q Consensus 11 i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~-~--~~~ 86 (585)
+..+++.|.+++...|..+++.+...... ......+|.|.. +.+.++.||..++..|+.++....... . ...
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~----~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~ 192 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDA----ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQ 192 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHH----HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccC
Confidence 68899999999999999888877654321 222345566555 457789999999999999876321000 0 123
Q ss_pred chHHHhhhhh-chhhHHHHHHHHHHHHHHhhcChh--hHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChH---H
Q 007918 87 LLPPLETLCT-VEETCVRDKAVESLCRIGSQMRES--DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI---L 160 (585)
Q Consensus 87 l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~---~ 160 (585)
.++.|..++. ++++.+|..|+.+|..++..-... ......+|.+.++..+.++.+|..++.++..++...... .
T Consensus 193 ~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v 272 (780)
T 2z6g_A 193 MVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAV 272 (780)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHH
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHH
Confidence 4455554444 558999999999999987642211 123357888888888888899999999999987654332 2
Q ss_pred -HHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcc---cchHHHHHHHHHHhccC---hhHHHHHHHHHHHHhhccCc
Q 007918 161 -KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQD---DSVRLLAVEGCAALGKLLEP 233 (585)
Q Consensus 161 -~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d---~~vr~~a~~~l~~l~~~~~~ 233 (585)
....++.+..++.++++.++..++.++..++..... .......++.+..++.+ +..+..++.++..++..-..
T Consensus 273 ~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~ 352 (780)
T 2z6g_A 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 352 (780)
T ss_dssp HHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTH
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHH
Confidence 346788999999999999999999999877642100 01112234555556555 34666778888888753221
Q ss_pred --hhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCH
Q 007918 234 --QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 311 (585)
Q Consensus 234 --~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~ 311 (585)
......+++.+..++.+.+..++..++.++..++...........+++.+.+++++.++.+|..++.+|..++..-..
T Consensus 353 ~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~ 432 (780)
T 2z6g_A 353 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 432 (780)
T ss_dssp HHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 112344678899999999999999999999999876554444457899999999999999999999999998764211
Q ss_pred H---HHHHhhHHHHHHhccC-Cc-HHHHHHHHHHHHhhchhhCHH------HHHHhHHHHHHHhhcCCCh-HHHHHHHHH
Q 007918 312 E---LAIQHILPCVKELSSD-SS-QHVRSALASVIMGMAPLLGKD------ATIEQLLPIFLSLLKDEFP-DVRLNIISK 379 (585)
Q Consensus 312 ~---~~~~~i~~~l~~~~~d-~~-~~vr~~a~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~~-~vr~~a~~~ 379 (585)
. ......++.+..++.+ .+ ..+|..++.++++++...+.. ......+|.+..++.+.+. .+|..++.+
T Consensus 433 ~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~a 512 (780)
T 2z6g_A 433 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 512 (780)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHH
Confidence 1 1113456777777765 33 489999999999997643321 1234568889999988765 999999999
Q ss_pred hHHhhhhhchh--HHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHc-cCCchHHHHHHHH
Q 007918 380 LDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL-QDKVYSIRDAAAN 456 (585)
Q Consensus 380 l~~l~~~~~~~--~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~ 456 (585)
|++++..-... .....++|.+..++.+.++.+|..++..+.. . + +. .....+++..++.
T Consensus 513 L~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~n-------q-------~----~~~~~~~~~v~~~a~~ 574 (780)
T 2z6g_A 513 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ-------Q-------Q----FVEGVRMEEIVEACTG 574 (780)
T ss_dssp HHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC--------------------C----CSTTCCHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhcccc-------c-------h----hhcccChHHHHHHHHH
Confidence 99998532211 1224567888888887777777665554332 0 0 00 1233568888888
Q ss_pred HHHHHHHHhCH--HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChH--HHHhcHHHHHHhhcCCCCchHHHHH
Q 007918 457 NLKRLAEEFGP--EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNV 532 (585)
Q Consensus 457 ~l~~l~~~~~~--~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~l~d~~~~vR~~~ 532 (585)
+|+.++..-.. .......+|.+..++.+++..+|..++.++.+++..-... ......++.|..+++++++.||..+
T Consensus 575 aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A 654 (780)
T 2z6g_A 575 ALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYA 654 (780)
T ss_dssp HHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 88887632111 1123568899999999999999999999999987421111 1123468889999999999999999
Q ss_pred HHHHHHHHhhhc
Q 007918 533 AKVLQSLIPIVD 544 (585)
Q Consensus 533 ~~~l~~l~~~~~ 544 (585)
+.+|..+....+
T Consensus 655 ~~aL~~l~~~~~ 666 (780)
T 2z6g_A 655 AAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHHcCCh
Confidence 999999987544
No 17
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.91 E-value=3.8e-21 Score=203.54 Aligned_cols=486 Identities=14% Similarity=0.075 Sum_probs=338.7
Q ss_pred HhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChH----HHHHHHH
Q 007918 91 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRS 166 (585)
Q Consensus 91 l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~~~~l~~ 166 (585)
+...+.++++.+|.++.+.+..... ..+....+|.+.++..+++..+|..|+..+..++...... ....+++
T Consensus 120 lv~~L~~~~~~~r~~a~~~l~~~~~----~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~ 195 (780)
T 2z6g_A 120 NVQRLAEPSQMLKHAVVNLINYQDD----AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS 195 (780)
T ss_dssp ------CCSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHH
T ss_pred HHHHhcCccHHHHHHHHHHHHhhhH----HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHH
Confidence 3344456788888888877765422 2333456777777777788889999999999887754221 1235677
Q ss_pred HHHhhcC-CCchHHHHHHHHhHHHHHhhhcc--cchHHHHHHHHHHhccC--hhHHHHHHHHHHHHhhccCch--hh-hh
Q 007918 167 IYTQLCQ-DDMPMVRRSAASNLGKFAATVEP--AHLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEPQ--DC-VA 238 (585)
Q Consensus 167 ~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~~--~~-~~ 238 (585)
.+...+. +.++.+|..++.+|..+...... .......+|.+..++++ +.+|..|+.+|.+++...+.. .. ..
T Consensus 196 ~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~ 275 (780)
T 2z6g_A 196 AIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLA 275 (780)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHc
Confidence 7776665 45899999999999997654211 11223456777777777 679999999999998765431 12 35
Q ss_pred hhHHHHHHhccCCChHHHHHHHHHHHHHHHHhC---CcccccchHHHHHHhccCChHH-HHHHHHHHHHHHHHhhCHH--
Q 007918 239 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEAE-VRIAAAGKVTKFCRILNPE-- 312 (585)
Q Consensus 239 ~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll~d~~~~-vr~~a~~~l~~l~~~~~~~-- 312 (585)
..++.+.+++.++++.++..++.++..++.... ........++.++.++++.+.+ ++..++..+..++..-...
T Consensus 276 g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~ 355 (780)
T 2z6g_A 276 GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPA 355 (780)
T ss_dssp THHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHH
Confidence 688899999999999999999999987763210 0112235678888888877644 5556777787777532211
Q ss_pred HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchh--
Q 007918 313 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-- 390 (585)
Q Consensus 313 ~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-- 390 (585)
.....+++.+..++.+.+..++..++.++..++...........++|.+..++.+.++.+|..|+.+|+.++..-...
T Consensus 356 i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~ 435 (780)
T 2z6g_A 356 IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 435 (780)
T ss_dssp HHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 223456788899999999999999999999987655432223567899999999999999999999999997642211
Q ss_pred -HHhhhHHHHHHHHhcC-CCh-HHHHHHHHHhHHHHHhhCh------hhHHHHHHHHHHHHccCCc-hHHHHHHHHHHHH
Q 007918 391 -LLSQSLLPAIVELAED-RHW-RVRLAIIEYIPLLASQLGV------GFFDDKLGALCMQWLQDKV-YSIRDAAANNLKR 460 (585)
Q Consensus 391 -~~~~~ll~~l~~~~~~-~~~-~~r~~~~~~l~~l~~~~~~------~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~ 460 (585)
......+|.+..++.+ .++ .+|..++.+++.+....+. .......+|.+..++.+++ +.+|..|+.+|+.
T Consensus 436 ~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~n 515 (780)
T 2z6g_A 436 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN 515 (780)
T ss_dssp HHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 1123467888887765 343 8999999999988643222 1122345788888888776 5999999999999
Q ss_pred HHHHhCH--HHHHhhhHHHHHhhhcCcc----------------------hHHHHHHHHHHHHhhhhcChH--HHHhcHH
Q 007918 461 LAEEFGP--EWAMQHITPQVLEMINNPH----------------------YLYRMTILRAISLLAPVMGSE--ITCSRLL 514 (585)
Q Consensus 461 l~~~~~~--~~~~~~ll~~l~~~l~~~~----------------------~~~R~~a~~~l~~l~~~~~~~--~~~~~i~ 514 (585)
++..... ......++|.+.+++.+.+ ..++..++.+++.++...... ......+
T Consensus 516 La~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i 595 (780)
T 2z6g_A 516 LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTI 595 (780)
T ss_dssp HHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCH
T ss_pred HhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcH
Confidence 9752111 1123567788877776543 346677888888876421111 1245678
Q ss_pred HHHHhhcCCCCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007918 515 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 515 ~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~ 580 (585)
|.|..++.+++++||..++.+|..+...-... ......++.|..++.+++++||..|.+|+..+..
T Consensus 596 ~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~ 663 (780)
T 2z6g_A 596 PLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 663 (780)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999987431111 1223467889999999999999999999998875
No 18
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.91 E-value=2.7e-21 Score=198.81 Aligned_cols=466 Identities=14% Similarity=0.118 Sum_probs=339.1
Q ss_pred HHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhccccccc-ccCCchHHHHHHHHHHhccccccCCcchHHhchH
Q 007918 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLP 89 (585)
Q Consensus 11 i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~ 89 (585)
+..+++.+.++|...|..+.-.+..+++. .++.. ..+++.+.. +.|.++.+|..+.+.++++. .++....+.+
T Consensus 51 ~~~vi~l~~s~~~~~Krl~yl~l~~~~~~-~~e~~-~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~~ 124 (591)
T 2vgl_B 51 FPDVVNCMQTDNLELKKLVYLYLMNYAKS-QPDMA-IMAVNSFVKDCEDPNPLIRALAVRTMGCIR----VDKITEYLCE 124 (591)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHHHHH-SHHHH-HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHccc-CchHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHHH
Confidence 56677789999999999888888777653 22322 223444544 88899999999999999884 4677888899
Q ss_pred HHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHH-hhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChH----HHHHH
Q 007918 90 PLETLCTVEETCVRDKAVESLCRIGSQMRESDLV-DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTEL 164 (585)
Q Consensus 90 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~-~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~~~~l 164 (585)
.+..++.|+++.||..|+.++..++...+ +... ..++|.+.++..|+++.+|..|+.+++.+...-++. .....
T Consensus 125 ~l~~~L~d~~~~VRk~A~~al~~i~~~~p-~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~ 203 (591)
T 2vgl_B 125 PLRKCLKDEDPYVRKTAAVCVAKLHDINA-QMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQN 203 (591)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHHSSC-CCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHH
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHhhCh-hhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHH
Confidence 99999999999999999999999998544 3333 358899999999999999999999999998765421 22334
Q ss_pred HHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC--hhHHHHHHHHHHHHhhccC--chh---hh
Q 007918 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLE--PQD---CV 237 (585)
Q Consensus 165 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~--~~~---~~ 237 (585)
+..+.+.+.+.+++.+..+...++.+... ++.....+++.+..++++ +.|+..|+.++..+....+ ++. ..
T Consensus 204 ~~~Ll~~l~~~~~~~q~~il~~l~~l~~~--~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~ 281 (591)
T 2vgl_B 204 INKLLTALNECTEWGQIFILDCLSNYNPK--DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL 281 (591)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHTSCCC--SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH
T ss_pred HHHHHHcCCCCCchHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH
Confidence 44555555667888888887777655421 122345666777776776 6699999999999876542 111 12
Q ss_pred hhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHh
Q 007918 238 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH 317 (585)
Q Consensus 238 ~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 317 (585)
..+.+.+..+. ++++.+|..++..++.++...+.... .. +..+....+|+ +.||..+++.+..++..-+ .+.
T Consensus 282 ~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~-~~-~~~~~~~~~d~-~~Ir~~al~~L~~l~~~~n----v~~ 353 (591)
T 2vgl_B 282 KKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILK-QE-IKVFFVKYNDP-IYVKLEKLDIMIRLASQAN----IAQ 353 (591)
T ss_dssp HHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTT-TC-TTTTSCCTTSC-HHHHHHHHHHHHHTCCSST----HHH
T ss_pred HHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHH-HH-HHhheeccCCh-HHHHHHHHHHHHHHCChhh----HHH
Confidence 34555555555 47899999999999999987543221 11 11222233444 9999999998888764322 255
Q ss_pred hHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHH
Q 007918 318 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 397 (585)
Q Consensus 318 i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll 397 (585)
+++.+...+.+.++.+|..++.+++.++..++. ..+.+++.+..++.+....|+..++.++..+....+.. .+..+
T Consensus 354 iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~--~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~--~~~~v 429 (591)
T 2vgl_B 354 VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ--SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK--YESII 429 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS--CCTTH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh--HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch--HHHHH
Confidence 677777888999999999999999999987642 34567888999999999999999999999887655432 24567
Q ss_pred HHHHHHhc-CCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHH
Q 007918 398 PAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITP 476 (585)
Q Consensus 398 ~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~ 476 (585)
+.+...+. ..++.+|..+++.+++....... ...++..+.+.+.+.+..||..++.++.++....+.. ....+.
T Consensus 430 ~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~---~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~--~~~~i~ 504 (591)
T 2vgl_B 430 ATLCENLDSLDEPDARAAMIWIVGEYAERIDN---ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSE--TQELVQ 504 (591)
T ss_dssp HHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT---HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCST--THHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHcccccccC---HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchH--HHHHHH
Confidence 77777766 46788999999999988766543 2456666666677889999999999999998755432 123455
Q ss_pred HHHhhh-cC-cchHHHHHHHHHHHHhhh
Q 007918 477 QVLEMI-NN-PHYLYRMTILRAISLLAP 502 (585)
Q Consensus 477 ~l~~~l-~~-~~~~~R~~a~~~l~~l~~ 502 (585)
.+++.. .| .+..+|..|...+.-+..
T Consensus 505 ~ll~~~~~d~~d~evrdRA~~y~~ll~~ 532 (591)
T 2vgl_B 505 QVLSLATQDSDNPDLRDRGYIYWRLLST 532 (591)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHTTTTT
T ss_pred HHHHHhhhcCCChHHHHHHHHHHHHHCc
Confidence 555554 45 678999999988776643
No 19
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.90 E-value=1.4e-20 Score=193.58 Aligned_cols=570 Identities=15% Similarity=0.130 Sum_probs=397.7
Q ss_pred cHHHHHHHhcChhHHHHHHHhhhHHHHHHhh---C------hhh-----hhh---hccccccc-ccCC--chHHHHHHHH
Q 007918 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARAL---G------EER-----TRK---ELIPFLSE-NNDD--DDEVLLAMAE 69 (585)
Q Consensus 10 ~i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~---~------~~~-----~~~---~l~~~l~~-~~d~--~~~vr~~~~~ 69 (585)
.++.+..-|.+.+++.-..+...+..+-..+ + ++. ... .++..|.. +.+. ....|-.+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~ 172 (810)
T 3now_A 93 GVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIE 172 (810)
T ss_dssp CHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHH
Confidence 4677888888888877777766666554432 1 111 111 22333333 3332 4567777877
Q ss_pred HHhccccccC--CcchHH---hchHHHhhhhhch----------hhHHHHHHHHHHHHHHhhcChh----hHHhhHHHHH
Q 007918 70 ELGVFIPYVG--GVEHAH---VLLPPLETLCTVE----------ETCVRDKAVESLCRIGSQMRES----DLVDWYIPLV 130 (585)
Q Consensus 70 ~l~~l~~~~~--~~~~~~---~l~~~l~~l~~~~----------~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l 130 (585)
.+-+-+++-. .+.... -+..+|.-...-+ .+..|..+.-++.++.+.+..+ .+.+.+-.++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 252 (810)
T 3now_A 173 LITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYI 252 (810)
T ss_dssp HHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHH
T ss_pred HHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 7766665432 111111 1222222221211 4679999999999999988853 3444556666
Q ss_pred HHhhcCcCccchhhHHhhhHhhcCCCChH-----HHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcc-cchHHHHH
Q 007918 131 KRLAAGEWFTARVSACGLFHIAYPSAPDI-----LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHLKTDIM 204 (585)
Q Consensus 131 ~~l~~~~~~~~r~~a~~~l~~~~~~~~~~-----~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~ 204 (585)
.............-++..+..+++...+. .....++.+..++.++++.++..|..+++..+..-.. ..+.+.=.
T Consensus 253 ~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv 332 (810)
T 3now_A 253 KDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGV 332 (810)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH
T ss_pred HHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc
Confidence 65555555555677788888888877653 2346789999999999999999999999997654221 12222223
Q ss_pred HHHHHhccC--hhHHHHHHHHHHHHhhccCc--------hhhhhhhHHHHHHhccCC--ChHHHHHHHHHHHHHHHHhCC
Q 007918 205 SIFEDLTQD--DSVRLLAVEGCAALGKLLEP--------QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGP 272 (585)
Q Consensus 205 ~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~--------~~~~~~~~~~l~~~~~d~--~~~vR~~~~~~l~~l~~~~~~ 272 (585)
|.+..+.++ +.+|..|+.+|.++...... +.....+.+.+.+++.++ ++.+|..++++|..++..-..
T Consensus 333 ~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~v 412 (810)
T 3now_A 333 DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAEC 412 (810)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHH
Confidence 788888766 66999999999999753321 122356788888888777 889999999999988643211
Q ss_pred --ccc-ccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhC-----------------------------------HHHH
Q 007918 273 --EPT-RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN-----------------------------------PELA 314 (585)
Q Consensus 273 --~~~-~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~-----------------------------------~~~~ 314 (585)
... ....+|.++++++.++..+...++..|+.++.... ....
T Consensus 413 k~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vv 492 (810)
T 3now_A 413 KEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLA 492 (810)
T ss_dssp HHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHH
Confidence 111 23589999999998889999999999999987431 0011
Q ss_pred HHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHH--HHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHH
Q 007918 315 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 392 (585)
Q Consensus 315 ~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 392 (585)
....+|.+..+++++++.+|..++.++++++..-... ....-.+|.+..++.+.++.+|..|+++|.+++....++..
T Consensus 493 eaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~ 572 (810)
T 3now_A 493 NEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572 (810)
T ss_dssp HTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence 2246899999999999999999999999998532211 12344788899999999999999999999999865433321
Q ss_pred -----hhhHHHHHHHHhcCC-ChHHHHHHHHHhHHHHHhhC---hhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHH
Q 007918 393 -----SQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 463 (585)
Q Consensus 393 -----~~~ll~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 463 (585)
....+|.|..++.+. +...+..++.++..++..-. ........+|.+..++.+++..||.+|+.+++.++.
T Consensus 573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~ 652 (810)
T 3now_A 573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM 652 (810)
T ss_dssp TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT
T ss_pred hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 123678888888754 44455678888888775311 112233457888899999999999999999999975
Q ss_pred HhCHHH---HH--hhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcCh--H-HHH-hcHHHHHHhhcCCCCchHHHHHHH
Q 007918 464 EFGPEW---AM--QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--E-ITC-SRLLPVVINASKDRVPNIKFNVAK 534 (585)
Q Consensus 464 ~~~~~~---~~--~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~--~-~~~-~~i~~~l~~~l~d~~~~vR~~~~~ 534 (585)
+++. +. ...++.+..++.+++..+|..|+.+++++...... . .+. ...+|.|..++.+++..+|..+++
T Consensus 653 --~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~ 730 (810)
T 3now_A 653 --SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIV 730 (810)
T ss_dssp --SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred --ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHH
Confidence 3321 22 35788999999999999999999999999874221 1 223 578999999999999999999999
Q ss_pred HHHHHHhhhch---HHHHhhHHHHHHHhcCCC---CccHHHHHHHHHHHHHHh
Q 007918 535 VLQSLIPIVDQ---SMVEKTIRPCLVELTEDP---DVDVRFFATQAIQSIDHV 581 (585)
Q Consensus 535 ~l~~l~~~~~~---~~~~~~~~~~l~~l~~D~---~~~Vr~~a~~al~~l~~~ 581 (585)
++.++...-+. .......++.|..++.++ +.+|+..|.++++.+-++
T Consensus 731 aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 731 IILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp HHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 99999864221 123345889999987655 688999999999887654
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.90 E-value=6.8e-21 Score=194.46 Aligned_cols=341 Identities=11% Similarity=0.075 Sum_probs=260.8
Q ss_pred hhhHHHHHHhccCC-ChHHHHHHHHHHHHHHHHhC---CcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhC---
Q 007918 238 AHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--- 310 (585)
Q Consensus 238 ~~~~~~l~~~~~d~-~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~--- 310 (585)
..++|.+.+++.++ ++.+|..++.+|+.++.... ........+|.+..++.++++.+|..++.+|+.++....
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~ 208 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 208 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccch
Confidence 34677888888876 78889888888888765211 111124578889999988889999999999999886421
Q ss_pred HHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhh-C--HHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhh
Q 007918 311 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL-G--KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 387 (585)
Q Consensus 311 ~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 387 (585)
.......+++.+..++.+.++.+|..++.++..++... + .......++|.+..++.+.++.+|..++.+|+.++...
T Consensus 209 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~ 288 (530)
T 1wa5_B 209 DYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 288 (530)
T ss_dssp HHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 11223467888889999999999999999999988543 1 23345678899999999999999999999999988643
Q ss_pred ch---hHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhC---hhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHH
Q 007918 388 GI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 461 (585)
Q Consensus 388 ~~---~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 461 (585)
+. ......++|.+..++.++++.+|..++.+++.++...+ ...+...++|.+..++.++++.+|..|+.+|+.+
T Consensus 289 ~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l 368 (530)
T 1wa5_B 289 QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 368 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 21 11223678999999999999999999999998874321 1122345788999999999999999999999999
Q ss_pred HHHhCHH----HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcCh--HH----HHhcHHHHHHhhcCCCCchHHHH
Q 007918 462 AEEFGPE----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--EI----TCSRLLPVVINASKDRVPNIKFN 531 (585)
Q Consensus 462 ~~~~~~~----~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~--~~----~~~~i~~~l~~~l~d~~~~vR~~ 531 (585)
+.. ..+ .....++|.+..++.++++.+|..++.++++++...++ +. ....++|.+..++.++++.+|..
T Consensus 369 ~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~ 447 (530)
T 1wa5_B 369 TAG-NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEV 447 (530)
T ss_dssp TTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHH
T ss_pred HcC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHH
Confidence 752 222 12357899999999999999999999999999876443 21 24568999999999999999999
Q ss_pred HHHHHHHHHhhhchH---------HH-----HhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007918 532 VAKVLQSLIPIVDQS---------MV-----EKTIRPCLVELTEDPDVDVRFFATQAIQSID 579 (585)
Q Consensus 532 ~~~~l~~l~~~~~~~---------~~-----~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~ 579 (585)
++.+|..+....+.. .+ ....++.|..+..+++.+|+..|..++..+.
T Consensus 448 al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 448 TLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 999999998654321 11 1235778888999999999999998887654
No 21
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.90 E-value=2.3e-20 Score=194.84 Aligned_cols=490 Identities=13% Similarity=0.061 Sum_probs=329.3
Q ss_pred cccccCCcchHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhh-HH--hhHHHHHHHhhcC-cCccchhhHHhhh
Q 007918 74 FIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESD-LV--DWYIPLVKRLAAG-EWFTARVSACGLF 149 (585)
Q Consensus 74 l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~-~~--~~l~~~l~~l~~~-~~~~~r~~a~~~l 149 (585)
|..|.++.......++.|..++.++++.+|..|+.+|..++....... +. ...++.+.+...+ +++.+|..++..+
T Consensus 2 l~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L 81 (644)
T 2z6h_A 2 LINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTL 81 (644)
T ss_dssp ----------CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred cccccchhhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 344455555556667888888889999999999999999988664322 11 1345555555544 4778888888888
Q ss_pred HhhcCCCChH---HHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhccc--c-hHHHHHHHHHHhccC--hhHHHHHH
Q 007918 150 HIAYPSAPDI---LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--H-LKTDIMSIFEDLTQD--DSVRLLAV 221 (585)
Q Consensus 150 ~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~-~~~~l~~~l~~l~~d--~~vr~~a~ 221 (585)
..+....... .....++.+..+++++++.+|..++.+|.+++...... . .....+|.+..++++ +.++..++
T Consensus 82 ~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~ 161 (644)
T 2z6h_A 82 HNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT 161 (644)
T ss_dssp HHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHH
T ss_pred HHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHH
Confidence 8776542111 12347788899999999999999999999998764221 1 124467777777776 56788888
Q ss_pred HHHHHHhhccCc---hhhhhhhHHHHHHhccCCC-hHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhccCChHHHH
Q 007918 222 EGCAALGKLLEP---QDCVAHILPVIVNFSQDKS-WRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVR 295 (585)
Q Consensus 222 ~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~-~~vR~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ll~d~~~~vr 295 (585)
.++..++...+. .......++.+.+++.+.+ ..++..++.+|..++..-.. .......++.+..++.+.+..++
T Consensus 162 ~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~ 241 (644)
T 2z6h_A 162 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV 241 (644)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence 888888753221 1122345677777776654 56778888888877632110 11123578889999999899999
Q ss_pred HHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCH--H-HHHHhHHHHHHHhhcCC--Ch
Q 007918 296 IAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--D-ATIEQLLPIFLSLLKDE--FP 370 (585)
Q Consensus 296 ~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l~d~--~~ 370 (585)
..++..|..++...........++|.+..++.+.++.+|..++.++..++..-.. . ......++.+..++.+. .+
T Consensus 242 ~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~ 321 (644)
T 2z6h_A 242 QNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 321 (644)
T ss_dssp HHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcH
Confidence 9999999999875433222246788888999999999999999999998763211 1 12234677777777653 37
Q ss_pred HHHHHHHHHhHHhhhhhchh------HHhhhHHHHHHHHhcCCC-hHHHHHHHHHhHHHHHhhC--hhhHHHHHHHHHHH
Q 007918 371 DVRLNIISKLDQVNQVIGID------LLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLG--VGFFDDKLGALCMQ 441 (585)
Q Consensus 371 ~vr~~a~~~l~~l~~~~~~~------~~~~~ll~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~ 441 (585)
.++..++.+|+.++..-+.. ......+|.+..++.+++ +.+|..++.++..++..-. .......++|.+..
T Consensus 322 ~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~ 401 (644)
T 2z6h_A 322 DITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQ 401 (644)
T ss_dssp HHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHH
Confidence 99999999999997543321 122357888999888764 7999999999988864311 11223345677777
Q ss_pred HccCCc----------------------hHHHHHHHHHHHHHHHHhCHH--HHHhhhHHHHHhhhcCcchHHHHHHHHHH
Q 007918 442 WLQDKV----------------------YSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNPHYLYRMTILRAI 497 (585)
Q Consensus 442 ~l~d~~----------------------~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~l~~~~~~~R~~a~~~l 497 (585)
++.+.+ .+++.+++.+|..++...... ......+|.+.+++.+++..+|..++.++
T Consensus 402 lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL 481 (644)
T 2z6h_A 402 LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVL 481 (644)
T ss_dssp HHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 766543 456667777777766432111 12356889999999999999999999999
Q ss_pred HHhhhhcChH--HHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCC
Q 007918 498 SLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDP 563 (585)
Q Consensus 498 ~~l~~~~~~~--~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~D~ 563 (585)
.++...-... ......++.|..++.++++.||..++.+|+.+....+..+......+.+..+..+.
T Consensus 482 ~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~ 549 (644)
T 2z6h_A 482 CELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTE 549 (644)
T ss_dssp HHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCC
Confidence 9987531111 11234578899999999999999999999999776543222211356666655443
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.89 E-value=7.5e-21 Score=190.68 Aligned_cols=341 Identities=13% Similarity=0.073 Sum_probs=258.0
Q ss_pred hhHHHHHHhccCC-ChHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCH---
Q 007918 239 HILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--- 311 (585)
Q Consensus 239 ~~~~~l~~~~~d~-~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~--- 311 (585)
.++|.+.+++.++ ++.+|..++.++..++..-.. .......+|.+.++++++++.+|..++.+|+.++.....
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 5777777777777 788999999888888752110 111246889999999999999999999999998864211
Q ss_pred HHHHHhhHHHHHHhccC-CcHHHHHHHHHHHHhhchhhC---HHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhh
Q 007918 312 ELAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 387 (585)
Q Consensus 312 ~~~~~~i~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~ 387 (585)
......+++.+..++.+ .++.+|..++.+++.++...+ .......++|.+..++.+.++.+|..++.+|..++...
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~ 223 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP 223 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCC
Confidence 12224678888888884 789999999999999985431 12223678899999999999999999999999988643
Q ss_pred ch---hHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhCh---hhHHHHHHHHHHHHccCCchHHHHHHHHHHHHH
Q 007918 388 GI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 461 (585)
Q Consensus 388 ~~---~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 461 (585)
.. ......++|.+..++.++++.+|..++.+++.++...+. ......++|.+..++.++++.+|..|+.+|+.+
T Consensus 224 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l 303 (450)
T 2jdq_A 224 NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNI 303 (450)
T ss_dssp HHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 21 112245789999999999999999999999988754221 112234788999999999999999999999999
Q ss_pred HHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHH----HHhcHHHHHHhhcCCCCchHHHHHHH
Q 007918 462 AEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAK 534 (585)
Q Consensus 462 ~~~~~~---~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~l~d~~~~vR~~~~~ 534 (585)
+..... ......++|.+..++.+++..+|..++.++++++....++. ....++|.|..+++++++.+|..++.
T Consensus 304 ~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 383 (450)
T 2jdq_A 304 TAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 383 (450)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHH
Confidence 752111 11235789999999999999999999999999987544332 23568999999999999999999999
Q ss_pred HHHHHHhhhchH---------HHHhhH-----HHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007918 535 VLQSLIPIVDQS---------MVEKTI-----RPCLVELTEDPDVDVRFFATQAIQSID 579 (585)
Q Consensus 535 ~l~~l~~~~~~~---------~~~~~~-----~~~l~~l~~D~~~~Vr~~a~~al~~l~ 579 (585)
++..+....+.. .+...+ ++.|..+..+++.+|+..|..+++.+-
T Consensus 384 aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 384 GLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 999998654321 122333 577888888899999999988887654
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.89 E-value=5.6e-20 Score=191.89 Aligned_cols=459 Identities=15% Similarity=0.076 Sum_probs=330.7
Q ss_pred HHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChHH----HHHHHHHHHhhcCC-CchHHHHHHHHhHHHHHhhhcc
Q 007918 122 LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDIL----KTELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEP 196 (585)
Q Consensus 122 ~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~----~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~ 196 (585)
+..-.+|.+.++..++++.+|..|+..+..++....... ....++.+...+.+ +++.+|..++.+|..+......
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~ 90 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 90 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh
Confidence 344467777788888888999999999999987765421 13566777776654 4899999999999987654211
Q ss_pred --cchHHHHHHHHHHhccC--hhHHHHHHHHHHHHhhccCch---hhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHH
Q 007918 197 --AHLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 269 (585)
Q Consensus 197 --~~~~~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~ 269 (585)
.......+|.+..++++ +.+|..++.++.+++...+.. ......+|.+.+++.+++++++..++.+|..++..
T Consensus 91 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~ 170 (644)
T 2z6h_A 91 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 170 (644)
T ss_dssp HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc
Confidence 11122356777777776 679999999999998765331 12356889999999999999999999999888752
Q ss_pred hCC---cccccchHHHHHHhccCCh-HHHHHHHHHHHHHHHHhhCHH--HHHHhhHHHHHHhccCCcHHHHHHHHHHHHh
Q 007918 270 VGP---EPTRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMG 343 (585)
Q Consensus 270 ~~~---~~~~~~l~~~l~~ll~d~~-~~vr~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~ 343 (585)
.+. .......++.+..++.+.+ ..++..++..|..++..-... ......++.+..++.+.+..++..++..+.+
T Consensus 171 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~n 250 (644)
T 2z6h_A 171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 250 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 111 1122356888888888765 567788888888876432211 2223568888899999999999999999999
Q ss_pred hchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhch--h-HHhhhHHHHHHHHhcCC--ChHHHHHHHHH
Q 007918 344 MAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--D-LLSQSLLPAIVELAEDR--HWRVRLAIIEY 418 (585)
Q Consensus 344 l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~ll~~l~~~~~~~--~~~~r~~~~~~ 418 (585)
++...........++|.+..++.+.++.+|..++.+|..++..-.. . ......+|.+..++.+. .+.+|..++.+
T Consensus 251 L~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~a 330 (644)
T 2z6h_A 251 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 330 (644)
T ss_dssp HGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHH
Confidence 9875443223346789999999999999999999999999764211 1 12234678888877653 37999999999
Q ss_pred hHHHHHhhChh------hHHHHHHHHHHHHccCCc-hHHHHHHHHHHHHHHHHhC--HHHHHhhhHHHHHhhhcCcc---
Q 007918 419 IPLLASQLGVG------FFDDKLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFG--PEWAMQHITPQVLEMINNPH--- 486 (585)
Q Consensus 419 l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~--~~~~~~~ll~~l~~~l~~~~--- 486 (585)
++.+....+.. ......+|.+.+++.++. +.+|..++.+++.++..-. .......++|.+.+++.+.+
T Consensus 331 L~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v 410 (644)
T 2z6h_A 331 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDT 410 (644)
T ss_dssp HHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhh
Confidence 99986432211 222346888999998875 7999999999999875211 11234567888887776543
Q ss_pred -------------------hHHHHHHHHHHHHhhhhcChHH--HHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch
Q 007918 487 -------------------YLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ 545 (585)
Q Consensus 487 -------------------~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~ 545 (585)
..++..++.++..++....... .....+|.+..++.+.++++|..++.++..+...-..
T Consensus 411 r~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~ 490 (644)
T 2z6h_A 411 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA 490 (644)
T ss_dssp TTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHH
T ss_pred hhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHH
Confidence 3466677777777765332211 2456789999999999999999999999998753111
Q ss_pred H--HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007918 546 S--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 546 ~--~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~ 580 (585)
. ......++.|..++.+++++||..|.+++..+..
T Consensus 491 ~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 491 AEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 527 (644)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 1 1223467889999999999999999999998864
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.89 E-value=2.9e-20 Score=186.35 Aligned_cols=338 Identities=11% Similarity=0.040 Sum_probs=254.3
Q ss_pred hHHHhhhhhchhhHHHHHHHHHHHHHHhh-cCh--hh-HHh-hHHHHHHHhhcCc-CccchhhHHhhhHhhcCCCChH--
Q 007918 88 LPPLETLCTVEETCVRDKAVESLCRIGSQ-MRE--SD-LVD-WYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI-- 159 (585)
Q Consensus 88 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~-~~~--~~-~~~-~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~-- 159 (585)
++.+...+.++++.+|..|+.+|..++.. ..+ +. +.. .++|.+.++..++ ++.+|..++..+..++...++.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 55666666788899999999999987652 221 22 233 5788888777777 7889999999999988755432
Q ss_pred --HHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcc---cchHHHHHHHHHHhccC---hhHHHHHHHHHHHHhhcc
Q 007918 160 --LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQD---DSVRLLAVEGCAALGKLL 231 (585)
Q Consensus 160 --~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d---~~vr~~a~~~l~~l~~~~ 231 (585)
.....++.+..+++++++.+|..++.+|+.++..... ......++|.+..++++ +.+|..++.++..++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 2246889999999999999999999999999874311 11122345666666653 679999999999999654
Q ss_pred -C--chhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhccCChHHHHHHHHHHHHHH
Q 007918 232 -E--PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKF 305 (585)
Q Consensus 232 -~--~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l 305 (585)
+ .......++|.+.+++.++++.+|..++.+++.++..... ......++|.+..++.++++.+|..++.+++.+
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 2 2334477899999999999999999999999988753111 111245889999999999999999999999999
Q ss_pred HHhhCHH---HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCH---HHHHHhHHHHHHHhhcCCChHHHHHHHHH
Q 007918 306 CRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISK 379 (585)
Q Consensus 306 ~~~~~~~---~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 379 (585)
+...+.. .....+++.+..++.++++.+|..++.++++++..... ......++|.+..++.+.++.||..++.+
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~ 341 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA 341 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 7643221 11235788899999999999999999999999853221 11224688899999999999999999999
Q ss_pred hHHhhhhhchhH----HhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHh
Q 007918 380 LDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 425 (585)
Q Consensus 380 l~~l~~~~~~~~----~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~ 425 (585)
|+.++....++. ....++|.+..++.++++.+|..++.++..+...
T Consensus 342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 999986533221 2245788888888888999999999998888764
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.87 E-value=1e-19 Score=186.46 Aligned_cols=425 Identities=12% Similarity=0.026 Sum_probs=275.4
Q ss_pred hhhHHHHHHHHHHHHHHhhcChh--hHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChH----HHHHHHHHHHhh
Q 007918 98 EETCVRDKAVESLCRIGSQMRES--DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDI----LKTELRSIYTQL 171 (585)
Q Consensus 98 ~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l 171 (585)
+++.+|..++.+|..++..-... ......+|.+.++..++++.++..++..+..+....+.. .....++.+..+
T Consensus 72 ~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l 151 (529)
T 1jdh_A 72 NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 151 (529)
T ss_dssp CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHH
Confidence 35666666666666654421110 011235555666666666666666666666665433221 134567788888
Q ss_pred cCCCchHHHHHHHHhHHHHHhhhcc---cchHHHHHHHHHHhccC---hhHHHHHHHHHHHHhhccCc--hhhhhhhHHH
Q 007918 172 CQDDMPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQD---DSVRLLAVEGCAALGKLLEP--QDCVAHILPV 243 (585)
Q Consensus 172 ~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d---~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~ 243 (585)
+.++++.++..++.+|..++..... .......++.+..++.+ +..+..+..++..++..-.. .......++.
T Consensus 152 l~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~ 231 (529)
T 1jdh_A 152 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA 231 (529)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHH
Confidence 8888888888888888877652110 00111233444444443 44666777777777753221 1122457888
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhC--HH-HHHHhhHH
Q 007918 244 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PE-LAIQHILP 320 (585)
Q Consensus 244 l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~--~~-~~~~~i~~ 320 (585)
+..++.++++.++..++..+..++...+........+|.+.+++.++++++|..++..|..++..-. .. ......++
T Consensus 232 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~ 311 (529)
T 1jdh_A 232 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 311 (529)
T ss_dssp HHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Confidence 8899999999999999999999987655444445789999999999999999999999999976311 11 12234567
Q ss_pred HHHHhccC--CcHHHHHHHHHHHHhhchhhCHH------HHHHhHHHHHHHhhcCCC-hHHHHHHHHHhHHhhhhhchh-
Q 007918 321 CVKELSSD--SSQHVRSALASVIMGMAPLLGKD------ATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGID- 390 (585)
Q Consensus 321 ~l~~~~~d--~~~~vr~~a~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~- 390 (585)
.+..++.+ .++.+|..++.++++++...+.. ......+|.+..++.+++ +.+|..++.+++.++..-...
T Consensus 312 ~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~ 391 (529)
T 1jdh_A 312 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA 391 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhH
Confidence 77777764 34899999999999997643321 122346788999999876 599999999999988532211
Q ss_pred -HHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCH--
Q 007918 391 -LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-- 467 (585)
Q Consensus 391 -~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-- 467 (585)
.....++|.+..++.+.++.+|..+++.+....-..| ....+++..++.++..++.....
T Consensus 392 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~-----------------~~~~~i~~~~~~al~~L~~~~~~~~ 454 (529)
T 1jdh_A 392 PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG-----------------VRMEEIVEGCTGALHILARDVHNRI 454 (529)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHC-----------CBTT-----------------BCHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhcc-----------------ccHHHHHHHHHHHHHHHhcCchHHH
Confidence 1224678899999888889999988887765110001 11234555666666666542111
Q ss_pred HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcC--hHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHH
Q 007918 468 EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG--SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 539 (585)
Q Consensus 468 ~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~--~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l 539 (585)
.......++.+..++.+++..+|..+..++.++...-. ........++.+..+++++++.||..+..++..+
T Consensus 455 ~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 455 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 12345678999999999999999999999999874211 1112345678899999999999999999999876
No 26
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.87 E-value=3.4e-19 Score=182.01 Aligned_cols=365 Identities=12% Similarity=0.083 Sum_probs=268.4
Q ss_pred hhHHHHHHHHHHHHhhccC-c---hhhhhhhHHHHHHhccCCC-hHHHHHHHHHHHHHHHHhCC---cccccchHHHHHH
Q 007918 214 DSVRLLAVEGCAALGKLLE-P---QDCVAHILPVIVNFSQDKS-WRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVR 285 (585)
Q Consensus 214 ~~vr~~a~~~l~~l~~~~~-~---~~~~~~~~~~l~~~~~d~~-~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ 285 (585)
+.+|..|+..+..++...+ + ......++|.+.+++.+++ +.+|..++.+|+.++..... .......+|.+..
T Consensus 88 ~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 167 (528)
T 4b8j_A 88 NNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK 167 (528)
T ss_dssp HHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHH
Confidence 3355555555555543322 1 1123456777888877765 88999999998888753111 1112357889999
Q ss_pred hccCChHHHHHHHHHHHHHHHHhhCH---HHHHHhhHHHHHHhc-cCCcHHHHHHHHHHHHhhchhhC--HHHHHHhHHH
Q 007918 286 LLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELS-SDSSQHVRSALASVIMGMAPLLG--KDATIEQLLP 359 (585)
Q Consensus 286 ll~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~ 359 (585)
++.++++.+|..++.+|+.++..... .......++.+..++ .+.++.++..++.++..++...+ .......++|
T Consensus 168 lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~ 247 (528)
T 4b8j_A 168 LLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALP 247 (528)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Confidence 99999999999999999999754211 112234678888888 67889999999999999876532 2234567889
Q ss_pred HHHHhhcCCChHHHHHHHHHhHHhhhhhchh---HHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhCh---hhHHH
Q 007918 360 IFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDD 433 (585)
Q Consensus 360 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~~ 433 (585)
.+..++.+.++.++..++.+|+.++...... .....++|.+..++.++++.+|..++.+++.++..... ..+..
T Consensus 248 ~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 327 (528)
T 4b8j_A 248 ALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDH 327 (528)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTT
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 9999999999999999999999988543321 12235789999999999999999999999988753211 11223
Q ss_pred HHHHHHHHHccCC-chHHHHHHHHHHHHHHHHhCHH----HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHH
Q 007918 434 KLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI 508 (585)
Q Consensus 434 ~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~ 508 (585)
.++|.+..++.++ +..+|..|+.+|+.++.. ..+ .....++|.+..++.+.+..+|..++.++++++...+++.
T Consensus 328 ~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~ 406 (528)
T 4b8j_A 328 QALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQ 406 (528)
T ss_dssp THHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHH
Confidence 4688899999988 999999999999999863 222 1345788999999998999999999999999987644332
Q ss_pred ----HHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH--------------HHHhhHHHHHHHhcCCCCccHHHH
Q 007918 509 ----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--------------MVEKTIRPCLVELTEDPDVDVRFF 570 (585)
Q Consensus 509 ----~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--------------~~~~~~~~~l~~l~~D~~~~Vr~~ 570 (585)
....+++.|..++.++++.++..++.+|..++...+.. ......++.+..+..+++.+|+..
T Consensus 407 ~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~ 486 (528)
T 4b8j_A 407 IKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEK 486 (528)
T ss_dssp HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHH
Confidence 13567899999999999999999999999998654321 112234677888889999999999
Q ss_pred HHHHHHHHH
Q 007918 571 ATQAIQSID 579 (585)
Q Consensus 571 a~~al~~l~ 579 (585)
|.+.++.+.
T Consensus 487 a~~il~~~~ 495 (528)
T 4b8j_A 487 AVKILEAYW 495 (528)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHC
Confidence 999988764
No 27
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.86 E-value=4.1e-19 Score=183.10 Aligned_cols=462 Identities=11% Similarity=0.047 Sum_probs=316.6
Q ss_pred ccCCchHHHHHHHHHHhccccccCCcchHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhc
Q 007918 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAA 135 (585)
Q Consensus 56 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~ 135 (585)
..+++.+.|+.+--.+..++. .+++..-...+.+.+-+.++++.+|-.|+++++.+. ...+...+.|.+.++..
T Consensus 79 ~~s~~~~~Krl~Yl~~~~~~~--~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~----~~~~~~~l~~~l~~~L~ 152 (618)
T 1w63_A 79 IASQKFTDKRIGYLGAMLLLD--ERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG----SSEMCRDLAGEVEKLLK 152 (618)
T ss_dssp HHSSSHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHH
T ss_pred HcCCchHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHc
Confidence 345666766665555555544 234555567777888888999999999999999986 23566778899999999
Q ss_pred CcCccchhhHHhhhHhhcCCCChHHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcc-----cchHHHHHHHHHHh
Q 007918 136 GEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-----AHLKTDIMSIFEDL 210 (585)
Q Consensus 136 ~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~l 210 (585)
++++.+|..|+.++..++...++ ....+++.+..++.|+++.|+..|+.++..++..-+. ....+.+...+..+
T Consensus 153 ~~~~~VRk~A~~al~~l~~~~p~-~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~ 231 (618)
T 1w63_A 153 TSNSYLRKKAALCAVHVIRKVPE-LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNL 231 (618)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCGG-GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHChH-HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875543 3446788888999999999999999999998754321 11223344444443
Q ss_pred c-------------cChhHHHHHHHHHHHHhhccCchhhhhhhHHHHHHhcc------CCChHHHHHHHHHHHHHHHHhC
Q 007918 211 T-------------QDDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ------DKSWRVRYMVANQLYELCEAVG 271 (585)
Q Consensus 211 ~-------------~d~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~------d~~~~vR~~~~~~l~~l~~~~~ 271 (585)
. .++..+...++.++.++..-+ ...+.+.+.+.+++. +.+..|...+++++..+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~--~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~--- 306 (618)
T 1w63_A 232 IMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD--DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS--- 306 (618)
T ss_dssp HHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH--HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC---
T ss_pred HcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC---
Confidence 2 235577778888888775422 123345555555432 3355777778777765311
Q ss_pred CcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHH
Q 007918 272 PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD 351 (585)
Q Consensus 272 ~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~ 351 (585)
.........+.+..++.++++++|..++.++..++...+ . ......+.+...+.|++..+|..+++.+..++..-.
T Consensus 307 ~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p-~-~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n-- 382 (618)
T 1w63_A 307 ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH-N-AVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN-- 382 (618)
T ss_dssp CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH-H-HHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS--
T ss_pred CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH-H-HHHHHHHHHHHHccCCChhHHHHHHHHHHHHccccc--
Confidence 111112356777788888899999999999999987632 2 224455677788899999999999999999986433
Q ss_pred HHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhH
Q 007918 352 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 431 (585)
Q Consensus 352 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~ 431 (585)
.+.+++.+...+.+.+.++|..++.+++.++..+++.. ...++.+.+++++....++..++..+..+....+. .
T Consensus 383 --v~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~--~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~--l 456 (618)
T 1w63_A 383 --IRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSK--RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVE--M 456 (618)
T ss_dssp --THHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCH--HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCS--T
T ss_pred --HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccH--HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChh--H
Confidence 24456667777777889999999999999998775432 34677777777766655666666666666654332 2
Q ss_pred HHHHHHHHHHHccC--CchHHHHHHHHHHHHHHHHhCHH---------HHHhhhHHHHHhhhc--CcchHHHHHHHHHHH
Q 007918 432 DDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPE---------WAMQHITPQVLEMIN--NPHYLYRMTILRAIS 498 (585)
Q Consensus 432 ~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~---------~~~~~ll~~l~~~l~--~~~~~~R~~a~~~l~ 498 (585)
....++.+...+.+ ....+...++..+|.++..+... .....+.+.+..++. ..+..+|..++.++.
T Consensus 457 ~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~ 536 (618)
T 1w63_A 457 HAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIM 536 (618)
T ss_dssp HHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 33445555555543 23445557899999998754210 001123444444443 467889999999998
Q ss_pred HhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 007918 499 LLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 541 (585)
Q Consensus 499 ~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~ 541 (585)
.+....+. ..+.+...+..+..|.+++||..+...+.-+..
T Consensus 537 Kl~~~~~~--~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 537 KLSTRFTC--TVNRIKKVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp HHHTTCSS--CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHhCcc--hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 88876543 235566666667788899999999988777643
No 28
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.86 E-value=1.3e-18 Score=179.47 Aligned_cols=529 Identities=11% Similarity=0.026 Sum_probs=356.9
Q ss_pred ccHHHHHHHhcCh--hHHHHHHHhhhHHHHHHhhChhhhhhhcccccccccCCchHHHHHHHHHHhccccccCCcchHHh
Q 007918 9 YPIAVLIDELKND--DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHV 86 (585)
Q Consensus 9 ~~i~~l~~~l~~~--~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 86 (585)
..+..++..+.+. ..++|....+.+.++-..+... +....+.++.+.+.-.. .| .+ ...
T Consensus 10 ~~l~~~i~~ir~~~~~~~e~~~i~~e~~~ir~~l~~~---------------~~~~k~~~l~kli~~~~--~G-~d-~~~ 70 (618)
T 1w63_A 10 IRLRELIRTIRTARTQAEEREMIQKECAAIRSSFREE---------------DNTYRCRNVAKLLYMHM--LG-YP-AHF 70 (618)
T ss_dssp CCHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHTTT---------------CTTTHHHHHHHHHHHHH--TT-CC-CGG
T ss_pred ccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhCC---------------CHHHHHHHHHHHHHHHH--cC-CC-Ccc
Confidence 3478888887754 3456666666666555444321 11122223333333222 13 22 233
Q ss_pred chHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChHHHHHHHH
Q 007918 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRS 166 (585)
Q Consensus 87 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~ 166 (585)
...-+.+++.+++...|+.+--.+..++..- .+..-.....+.+-++++++.+|..|...++.+. .++..+.+.+
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~--~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~~~~~~l~~ 145 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDER--QDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG---SSEMCRDLAG 145 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC---CHHHHHHHHH
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC---CHHHHHHHHH
Confidence 4444556777899999888877777766542 2233345666667778889999999999999987 3566678899
Q ss_pred HHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC--hhHHHHHHHHHHHHhhccCc-hhhhhhhHHH
Q 007918 167 IYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEP-QDCVAHILPV 243 (585)
Q Consensus 167 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~~ 243 (585)
.+..++.|+++.||+.|+.+++++.... + ...+.+++.+..++.| +.|+..|+.++..+++.-+. ......+.|.
T Consensus 146 ~l~~~L~~~~~~VRk~A~~al~~l~~~~-p-~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~ 223 (618)
T 1w63_A 146 EVEKLLKTSNSYLRKKAALCAVHVIRKV-P-ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQ 223 (618)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHHC-G-GGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHC-h-HHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 9999999999999999999999999864 2 3345667777777777 56999999999998865332 1122334454
Q ss_pred HHHhcc---------------CCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcc------CChHHHHHHHHHHH
Q 007918 244 IVNFSQ---------------DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR------DNEAEVRIAAAGKV 302 (585)
Q Consensus 244 l~~~~~---------------d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~------d~~~~vr~~a~~~l 302 (585)
+.+.+. ..++-.+...++.++.++.. +......+.+.+.+++. +.+..|...+++++
T Consensus 224 l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~--~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i 301 (618)
T 1w63_A 224 LVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN--DDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTI 301 (618)
T ss_dssp HHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT--CHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 444322 23666777788888776642 11112345555555532 33567888888887
Q ss_pred HHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHH
Q 007918 303 TKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 382 (585)
Q Consensus 303 ~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 382 (585)
..+.. .........+.+..++.++++.+|..++.+++.++...+ .......+.+..++.|++..||..++..+..
T Consensus 302 ~~l~~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p--~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~ 376 (618)
T 1w63_A 302 MDIKS---ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH--NAVQRHRSTIVDCLKDLDVSIKRRAMELSFA 376 (618)
T ss_dssp HHSCC---CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH--HHHGGGHHHHHHGGGSSCHHHHHHHHHHHHH
T ss_pred HhcCC---CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH--HHHHHHHHHHHHHccCCChhHHHHHHHHHHH
Confidence 76532 122234566777888888999999999999999986543 2334456678888999999999999999998
Q ss_pred hhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Q 007918 383 VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 462 (585)
Q Consensus 383 l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 462 (585)
++..-.. +.+++.+...+.+.+..+|..++..++.++..+.+. ....++.+.+++.+....++..++..+..+.
T Consensus 377 l~~~~nv----~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~--~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii 450 (618)
T 1w63_A 377 LVNGNNI----RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPS--KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLI 450 (618)
T ss_dssp HCCSSST----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHHHHHHTGGGSCSSHHHHHHHHH
T ss_pred HcccccH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc--HHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 8763221 346777777788888999999999999999876543 2445777778888777778877888888887
Q ss_pred HHhCHHHHHhhhHHHHHhhhcC--cchHHHHHHHHHHHHhhhhcChH---------HHHhcHHHHHHhhcC--CCCchHH
Q 007918 463 EEFGPEWAMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSE---------ITCSRLLPVVINASK--DRVPNIK 529 (585)
Q Consensus 463 ~~~~~~~~~~~ll~~l~~~l~~--~~~~~R~~a~~~l~~l~~~~~~~---------~~~~~i~~~l~~~l~--d~~~~vR 529 (585)
..... ..+.+++.+...+.+ ........+++++|..+..+... ..-..+.+.+..+++ +.++.||
T Consensus 451 ~~~p~--l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr 528 (618)
T 1w63_A 451 TNSVE--MHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTR 528 (618)
T ss_dssp HHSCS--THHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHH
T ss_pred hcChh--HHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHH
Confidence 75432 234456666666553 23344557899999998644210 001233444444443 5689999
Q ss_pred HHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007918 530 FNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 530 ~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~ 580 (585)
..++.++.++....+. ..+.+...|..+..|.|.+||..|...+.-+..
T Consensus 529 ~~~lta~~Kl~~~~~~--~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 529 GYALTAIMKLSTRFTC--TVNRIKKVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp HHHHHHHHHHHTTCSS--CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcc--hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 9999999999877643 245677777888899999999999998877653
No 29
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.86 E-value=3.4e-19 Score=181.93 Aligned_cols=303 Identities=13% Similarity=0.092 Sum_probs=219.2
Q ss_pred HHHHHHHhhcCCC-chHHHHHHHHhHHHHHhhhcc---cchHHHHHHHHHHhccC--hhHHHHHHHHHHHHhhccCc---
Q 007918 163 ELRSIYTQLCQDD-MPMVRRSAASNLGKFAATVEP---AHLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEP--- 233 (585)
Q Consensus 163 ~l~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~--- 233 (585)
.+++.+..++.++ ++.+|..++.+|+.++..... .......+|.+..++++ +.+|..|+.++..++...+.
T Consensus 130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~ 209 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 209 (530)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchH
Confidence 3566666777665 677777777777777653110 00112234444444444 56888888888877754221
Q ss_pred hhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhC
Q 007918 234 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN 310 (585)
Q Consensus 234 ~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~ 310 (585)
......+++.+..++.+.++.+|..++.+|+.++..-+. ......++|.+..++.++++.++..++.+|..++...+
T Consensus 210 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~ 289 (530)
T 1wa5_B 210 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ 289 (530)
T ss_dssp HHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCH
Confidence 112345788888999889999999999999999864311 11234689999999999999999999999999986422
Q ss_pred H--H-HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCH---HHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhh
Q 007918 311 P--E-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 384 (585)
Q Consensus 311 ~--~-~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 384 (585)
. . .....++|.+..++.++++.+|..++.+++.++...+. ......++|.+..++.+.++.+|..|+.+|+.++
T Consensus 290 ~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~ 369 (530)
T 1wa5_B 290 EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNIT 369 (530)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 1 1 22236789999999999999999999999999854321 1123468899999999999999999999999998
Q ss_pred hhhchh---HHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhCh--hh----HHHHHHHHHHHHccCCchHHHHHHH
Q 007918 385 QVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GF----FDDKLGALCMQWLQDKVYSIRDAAA 455 (585)
Q Consensus 385 ~~~~~~---~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~--~~----~~~~l~~~l~~~l~d~~~~vr~~a~ 455 (585)
...... .+...++|.+..++.++++.+|..++.+++.++...+. +. ....++|.+..++.++++.||..++
T Consensus 370 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al 449 (530)
T 1wa5_B 370 AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTL 449 (530)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHH
Confidence 632211 12246788898988889999999999999999876433 22 2234678888899999999999999
Q ss_pred HHHHHHHHHh
Q 007918 456 NNLKRLAEEF 465 (585)
Q Consensus 456 ~~l~~l~~~~ 465 (585)
.+|..++...
T Consensus 450 ~aL~~l~~~~ 459 (530)
T 1wa5_B 450 DALENILKMG 459 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988653
No 30
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.86 E-value=8.1e-19 Score=179.21 Aligned_cols=378 Identities=11% Similarity=0.079 Sum_probs=274.0
Q ss_pred HHHHHhhcCCCchHHHHHHHHhHHHHHhhhccc----chHHHHHHHHHHhccC---hhHHHHHHHHHHHHhhccCc---h
Q 007918 165 RSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA----HLKTDIMSIFEDLTQD---DSVRLLAVEGCAALGKLLEP---Q 234 (585)
Q Consensus 165 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~l~~d---~~vr~~a~~~l~~l~~~~~~---~ 234 (585)
++.+...+.++++.+|..|+..+.+++.....+ .....++|.+..++.+ +.+|..|+.+|..++...+. .
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 455555566667777777777777776543211 1122345555555544 45777788887777763222 1
Q ss_pred hhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhc-cCChHHHHHHHHHHHHHHHHhhC
Q 007918 235 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILN 310 (585)
Q Consensus 235 ~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~l~~~~~ 310 (585)
......+|.+..++.++++.+|..++.+|+.++...+. .......++.++.++ .+.++.++..++.+|..++...+
T Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~ 235 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP 235 (528)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 12234788888899999999999999999998753111 111235788888888 67789999999999999987532
Q ss_pred --HHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHH---HHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhh
Q 007918 311 --PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 385 (585)
Q Consensus 311 --~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 385 (585)
.......++|.+..++.+.++.++..++.+++.++...+.. .....++|.+..++.+.++.++..|+.+|+.++.
T Consensus 236 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 315 (528)
T 4b8j_A 236 QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT 315 (528)
T ss_dssp CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHc
Confidence 12334678899999999999999999999999998543321 1233578899999999999999999999999986
Q ss_pred hhch---hHHhhhHHHHHHHHhcCC-ChHHHHHHHHHhHHHHHhhCh---hhHHHHHHHHHHHHccCCchHHHHHHHHHH
Q 007918 386 VIGI---DLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNL 458 (585)
Q Consensus 386 ~~~~---~~~~~~ll~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 458 (585)
.... ..+...++|.+..++.++ ++.+|..++.+++.++..... ..+...++|.+..++.+.+..+|..|+.+|
T Consensus 316 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL 395 (528)
T 4b8j_A 316 GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAI 395 (528)
T ss_dssp SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3321 112245789999999888 999999999999998753111 112235678899999999999999999999
Q ss_pred HHHHHHhCHHH----HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChH---------HH-----HhcHHHHHHhh
Q 007918 459 KRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---------IT-----CSRLLPVVINA 520 (585)
Q Consensus 459 ~~l~~~~~~~~----~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~---------~~-----~~~i~~~l~~~ 520 (585)
+.++....++. ....+++.+..++.+++..++..++.++.++....... .+ ....+..+..+
T Consensus 396 ~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L 475 (528)
T 4b8j_A 396 SNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENL 475 (528)
T ss_dssp HHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHG
T ss_pred HHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHH
Confidence 99988644432 23578999999999999999999999999998643220 11 23346677888
Q ss_pred cCCCCchHHHHHHHHHHHHHhh
Q 007918 521 SKDRVPNIKFNVAKVLQSLIPI 542 (585)
Q Consensus 521 l~d~~~~vR~~~~~~l~~l~~~ 542 (585)
.+++++.++..+..++..++..
T Consensus 476 ~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 476 QSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp GGCSSHHHHHHHHHHHHHHCC-
T ss_pred HcCCCHHHHHHHHHHHHHHCCC
Confidence 8899999999999999988754
No 31
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.81 E-value=1.5e-16 Score=163.35 Aligned_cols=463 Identities=11% Similarity=0.057 Sum_probs=298.0
Q ss_pred ccCCchHHHHHHHHHHhccccccCCcchHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhh-
Q 007918 56 NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA- 134 (585)
Q Consensus 56 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~- 134 (585)
..+++.+.|+.+--.+..++. ++++..-..++.+.+-++++++.+|-.|+.+++.+.. ..+.+.+.|.+.+..
T Consensus 83 ~~s~~~~~Krl~YL~l~~~~~--~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~----~e~~~~l~~~v~~~l~ 156 (621)
T 2vgl_A 83 LSSNRYTEKQIGYLFISVLVN--SNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGS----REMAEAFAGEIPKILV 156 (621)
T ss_dssp GGCSCHHHHHHHHHHHHHSCC--CCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC----HHHHHHHTTHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHcc--CCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC----HHHHHHHHHHHHHHHh
Confidence 456778888877777777765 3456666677788888889999999999999998843 446778888888888
Q ss_pred -cCcCccchhhHHhhhHhhcCCCChHHHH--HHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhccc--chHHHHHHHHHH
Q 007918 135 -AGEWFTARVSACGLFHIAYPSAPDILKT--ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPA--HLKTDIMSIFED 209 (585)
Q Consensus 135 -~~~~~~~r~~a~~~l~~~~~~~~~~~~~--~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~ 209 (585)
.|.++.+|..|+.++..++...++ ... .+.+.+..+++|+++.|+.+|..++..++..-+.. ...+.+...+.+
T Consensus 157 ~~d~~~~VRK~A~~al~kl~~~~p~-~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ 235 (621)
T 2vgl_A 157 AGDTMDSVKQSAALCLLRLYRTSPD-LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSR 235 (621)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHCGG-GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhChh-hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 888999999999999988874433 223 67888888999999999999999999988754221 123334444444
Q ss_pred hcc---------------ChhHHHHHHHHHHHHhhccCchhhhhhhHHHHHHhc---cC-C----------ChHHHHHHH
Q 007918 210 LTQ---------------DDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS---QD-K----------SWRVRYMVA 260 (585)
Q Consensus 210 l~~---------------d~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~---~d-~----------~~~vR~~~~ 260 (585)
++. ++..+...++.+..++..-. ....+.+.+.+..++ .+ + ...|...++
T Consensus 236 ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d-~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~ 314 (621)
T 2vgl_A 236 IVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPED-PAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAI 314 (621)
T ss_dssp HHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSS-HHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHH
Confidence 321 23466666666665543211 122222333333222 11 1 124444455
Q ss_pred HHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhcc-CCcHHHHHHHHH
Q 007918 261 NQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS-DSSQHVRSALAS 339 (585)
Q Consensus 261 ~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~-d~~~~vr~~a~~ 339 (585)
+++..+. +...........+..++.++++++|..++.++..++...+.........+.+...+. |++..+|..++.
T Consensus 315 ~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~ 391 (621)
T 2vgl_A 315 SLIIHHD---SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVD 391 (621)
T ss_dssp HHHHHHC---CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHhcC---CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHH
Confidence 5544432 111222345667778888888999999999999998765422233455566667677 899999999999
Q ss_pred HHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHh
Q 007918 340 VIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 419 (585)
Q Consensus 340 ~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l 419 (585)
.+..++.. ...+.++..+...+.+.+.+.|..++.+++.++..+.+.. +..+..+.+++.+....+...++..+
T Consensus 392 lL~~l~~~----~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~--~~~v~~Ll~ll~~~~~~v~~ev~~~l 465 (621)
T 2vgl_A 392 LLYAMCDR----SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDY--TWYVDTILNLIRIAGDYVSEEVWYRV 465 (621)
T ss_dssp HHHHHCCH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST--HHHHHHHHHHHHHHGGGSCSHHHHHH
T ss_pred HHHHHcCh----hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHhhcccchHHHHHHH
Confidence 98888743 3456777778888888889999999999999887765332 34556666665544333444455555
Q ss_pred HHHHHhhChhhHHHHHHHHHHHHccCCc--hHHHHHHHHHHHHHHHHhCHHH-H-HhhhHHHHHhhhcCcchHHHHHHHH
Q 007918 420 PLLASQLGVGFFDDKLGALCMQWLQDKV--YSIRDAAANNLKRLAEEFGPEW-A-MQHITPQVLEMINNPHYLYRMTILR 495 (585)
Q Consensus 420 ~~l~~~~~~~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~-~-~~~ll~~l~~~l~~~~~~~R~~a~~ 495 (585)
..+....+ .........+...+.|+. ..+-..++..+|.++....... . ...++..+.+.+.+.+..+|..++.
T Consensus 466 ~~ii~~~~--~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lt 543 (621)
T 2vgl_A 466 IQIVINRD--DVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLS 543 (621)
T ss_dssp HHHHGGGC--SCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHhCCh--hHHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 54443322 223344555566666654 2454556677777754332100 0 0134455556666777888888888
Q ss_pred HHHHhhhhcChHHHHhcHHHHHHhhcC--CCCchHHHHHHHHHHHH
Q 007918 496 AISLLAPVMGSEITCSRLLPVVINASK--DRVPNIKFNVAKVLQSL 539 (585)
Q Consensus 496 ~l~~l~~~~~~~~~~~~i~~~l~~~l~--d~~~~vR~~~~~~l~~l 539 (585)
++..+....+. ..+.+...+..... |.+++||..+...+.-+
T Consensus 544 a~~Kl~~~~p~--~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 544 TYIKFVNLFPE--VKATIQDVLRSDSQLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp HHHHHHHHCGG--GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHChH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 88887654432 23444444444555 78888888888776665
No 32
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.80 E-value=1.1e-16 Score=161.67 Aligned_cols=339 Identities=12% Similarity=0.121 Sum_probs=242.3
Q ss_pred hHHHHHHhcc-CCChHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCH---H
Q 007918 240 ILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---E 312 (585)
Q Consensus 240 ~~~~l~~~~~-d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~---~ 312 (585)
++|.|.++++ ++++.++..++.+|+.++..-.. .......+|.++.++.+++.++|..|+.+|+.++..... .
T Consensus 101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~ 180 (510)
T 3ul1_B 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDL 180 (510)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 5666666665 44567777777777777642111 112235788888999888889999999999888753211 1
Q ss_pred HHHHhhHHHHHHhccCCc-----HHHHHHHHHHHHhhchhhC---HHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhh
Q 007918 313 LAIQHILPCVKELSSDSS-----QHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 384 (585)
Q Consensus 313 ~~~~~i~~~l~~~~~d~~-----~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 384 (585)
......++.+..++.+++ ..+...++.++.+++..-. .......++|.+..++.+.+++++..++.+|..++
T Consensus 181 v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~ 260 (510)
T 3ul1_B 181 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 260 (510)
T ss_dssp HHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 222345677777776543 3456677777777765332 12234668899999999999999999999999987
Q ss_pred hhhchh---HHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhCh---hhHHHHHHHHHHHHccCCchHHHHHHHHHH
Q 007918 385 QVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNL 458 (585)
Q Consensus 385 ~~~~~~---~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l 458 (585)
..-... .....++|.+..++.++++.++..++.+++.++..-.. .......++.+..++.+++..+|..|+.+|
T Consensus 261 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL 340 (510)
T 3ul1_B 261 DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340 (510)
T ss_dssp SSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHH
T ss_pred hchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHH
Confidence 543221 12245789999999999999999999999887642111 112223466777888999999999999999
Q ss_pred HHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHH----HHhcHHHHHHhhcCCCCchHHHH
Q 007918 459 KRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFN 531 (585)
Q Consensus 459 ~~l~~~~~~---~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~l~d~~~~vR~~ 531 (585)
+.++..... ......++|.+..++.+.+..+|..|+.++.+++.....+. .....++.|.++++++++.++..
T Consensus 341 ~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~ 420 (510)
T 3ul1_B 341 SNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHH
Confidence 999753221 12346789999999999999999999999999987655432 24567899999999999999999
Q ss_pred HHHHHHHHHhhhc---h-HHH-----HhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007918 532 VAKVLQSLIPIVD---Q-SMV-----EKTIRPCLVELTEDPDVDVRFFATQAIQSI 578 (585)
Q Consensus 532 ~~~~l~~l~~~~~---~-~~~-----~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l 578 (585)
++.+|..+..... . +.+ ....++.|..+..+++.+|+..|.+.++..
T Consensus 421 ~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 421 ILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999875432 1 111 123567788888899999999998888764
No 33
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.79 E-value=2.6e-16 Score=159.89 Aligned_cols=340 Identities=11% Similarity=0.120 Sum_probs=245.8
Q ss_pred hhHHHHHHhcc-CCChHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhC---H
Q 007918 239 HILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN---P 311 (585)
Q Consensus 239 ~~~~~l~~~~~-d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~---~ 311 (585)
-++|.+.+++. ++++.++..++.+|+.++..-.. .......+|.++.++.+++.+++..|+.+|+.++..-. .
T Consensus 119 G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~ 198 (529)
T 3tpo_A 119 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRD 198 (529)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHH
Confidence 35666666664 45577777788888777643111 11223578889999999999999999999998875311 1
Q ss_pred HHHHHhhHHHHHHhccCCc-----HHHHHHHHHHHHhhchhhC---HHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHh
Q 007918 312 ELAIQHILPCVKELSSDSS-----QHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 383 (585)
Q Consensus 312 ~~~~~~i~~~l~~~~~d~~-----~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 383 (585)
.......++.+..++.+++ ..+...++.++..++..-. .......++|.+..++.+.+++++..++.+|..+
T Consensus 199 ~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l 278 (529)
T 3tpo_A 199 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL 278 (529)
T ss_dssp HHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 1222346777777776543 3456677777777765332 1233467889999999999999999999999998
Q ss_pred hhhhchh---HHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhC---hhhHHHHHHHHHHHHccCCchHHHHHHHHH
Q 007918 384 NQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANN 457 (585)
Q Consensus 384 ~~~~~~~---~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 457 (585)
+..-... .....++|.+..++.++++.++..++.+++.++..-. ........++.+..++.+++..+|..|+.+
T Consensus 279 ~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~a 358 (529)
T 3tpo_A 279 TDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 358 (529)
T ss_dssp HSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHH
T ss_pred hhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHH
Confidence 8643221 1224678999999999999999999999998864211 111223356788899999999999999999
Q ss_pred HHHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHH----HHhcHHHHHHhhcCCCCchHHH
Q 007918 458 LKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKF 530 (585)
Q Consensus 458 l~~l~~~~~~---~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~l~d~~~~vR~ 530 (585)
|+.++..... ......++|.+..++.+++..+|..|+.++.+++.....+. ....+++.|..++.++++.++.
T Consensus 359 L~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~ 438 (529)
T 3tpo_A 359 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 438 (529)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHH
Confidence 9999763221 12346789999999999999999999999999987655432 2356789999999999999999
Q ss_pred HHHHHHHHHHhhhc---h-HHHHh-----hHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007918 531 NVAKVLQSLIPIVD---Q-SMVEK-----TIRPCLVELTEDPDVDVRFFATQAIQSI 578 (585)
Q Consensus 531 ~~~~~l~~l~~~~~---~-~~~~~-----~~~~~l~~l~~D~~~~Vr~~a~~al~~l 578 (585)
.++.+|..+..... . +.+.. ..++.|..|..+++.+|+..|.+.++..
T Consensus 439 ~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 439 VILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999875432 1 12211 2456778888899999999988888653
No 34
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.78 E-value=4.6e-16 Score=159.63 Aligned_cols=538 Identities=12% Similarity=0.057 Sum_probs=346.0
Q ss_pred CCCcccHHHHHHHhcChh--HHHHHHHhhhHHHHHHhhChhhhhhhcccccccccCCchHHH-HHHHHHHhccccccCCc
Q 007918 5 DEPLYPIAVLIDELKNDD--IQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL-LAMAEELGVFIPYVGGV 81 (585)
Q Consensus 5 ~~~~~~i~~l~~~l~~~~--~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr-~~~~~~l~~l~~~~~~~ 81 (585)
..+...+..++..+.+.. .++|...-+.+.++-..+.. -...++..+ ..+.+.+.-.. .| .
T Consensus 7 ~~~~~~l~~~I~~ir~~~~~~~e~~~i~~E~~~ir~~~~~-------------~~~~~~~~k~~~l~Kli~l~~--~G-~ 70 (621)
T 2vgl_A 7 GEGMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKG-------------DKALDGYSKKKYVCKLLFIFL--LG-H 70 (621)
T ss_dssp --CCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHS-------------SSCCCHHHHHHHHHHHHHHHH--HS-C
T ss_pred CCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhc-------------CCCCCHHHHHHHHHHHHHHHH--cC-C
Confidence 344455677777766442 34555555555555443320 001133333 33444333222 23 2
Q ss_pred chHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChHHH
Q 007918 82 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILK 161 (585)
Q Consensus 82 ~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~ 161 (585)
+ .....+-+.+++.+++...|+.+--++..+++..+ +..-.+...+.+-++++++.+|..|...++.+.. ++..
T Consensus 71 d-~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~--e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~e~~ 144 (621)
T 2vgl_A 71 D-IDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNS--ELIRLINNAIKNDLASRNPTFMGLALHCIANVGS---REMA 144 (621)
T ss_dssp C-CCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH--HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC---HHHH
T ss_pred C-CchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCc--HHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCC---HHHH
Confidence 2 23344555558889999999988888887765432 2233345566666778899999999999998853 6677
Q ss_pred HHHHHHHHhhc--CCCchHHHHHHHHhHHHHHhhhcccchH-HHHHHHHHHhccC--hhHHHHHHHHHHHHhhccCch--
Q 007918 162 TELRSIYTQLC--QDDMPMVRRSAASNLGKFAATVEPAHLK-TDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEPQ-- 234 (585)
Q Consensus 162 ~~l~~~l~~l~--~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~~-- 234 (585)
+.+.+.+.+++ .|.++.||+.|+.++.++.... ++... +.+.+.+.+++.| +.|+..|+..+..++..-+..
T Consensus 145 ~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~ 223 (621)
T 2vgl_A 145 EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTS-PDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFK 223 (621)
T ss_dssp HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHC-GGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhC-hhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHH
Confidence 88999999999 9999999999999999999854 33222 2677778888877 569999999999887754321
Q ss_pred hhhhhhHHHHHHhccCC-------------ChHHHHHHHHHHHHHHHHhCCcccccchHHH---HHHhccC---------
Q 007918 235 DCVAHILPVIVNFSQDK-------------SWRVRYMVANQLYELCEAVGPEPTRMDLVPA---YVRLLRD--------- 289 (585)
Q Consensus 235 ~~~~~~~~~l~~~~~d~-------------~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~---l~~ll~d--------- 289 (585)
...+.+...+.+++.+. ++-.+...++.+..++.. ++......+.+. +++.+.+
T Consensus 224 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~-~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~ 302 (621)
T 2vgl_A 224 TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPP-EDPAVRGRLTECLETILNKAQEPPKSKKVQH 302 (621)
T ss_dssp THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSC-SSHHHHHHHHHHHHHHHHHHHSCCSCSSHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhhccCcccccccc
Confidence 12333444444443221 445566666665544311 011111223332 3322212
Q ss_pred Ch--HHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhc-
Q 007918 290 NE--AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK- 366 (585)
Q Consensus 290 ~~--~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~- 366 (585)
.+ ..|...+++++..+. +...........+..++.++++.+|..++.++..++...+.........+.+...+.
T Consensus 303 ~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~ 379 (621)
T 2vgl_A 303 SNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKT 379 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhcc
Confidence 12 266666766666653 233344667788888888899999999999999998766533344556677777888
Q ss_pred CCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCC
Q 007918 367 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK 446 (585)
Q Consensus 367 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 446 (585)
|++..||..++..+..++.. .. .+.++..+...+.+.+...|..++..++.++..+.+. ....+..+.+++.+.
T Consensus 380 d~d~~Ir~~aL~lL~~l~~~---~N-v~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~--~~~~v~~Ll~ll~~~ 453 (621)
T 2vgl_A 380 ERDVSVRQRAVDLLYAMCDR---SN-AQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD--YTWYVDTILNLIRIA 453 (621)
T ss_dssp CCCHHHHHHHHHHHHHHCCH---HH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS--THHHHHHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHcCh---hh-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHhh
Confidence 99999999999998887643 22 2567778888888888999999999999998776543 234566666776655
Q ss_pred chHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcch--HHHHHHHHHHHHhhhhcChHH-H-HhcHHHHHHhhcC
Q 007918 447 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHY--LYRMTILRAISLLAPVMGSEI-T-CSRLLPVVINASK 522 (585)
Q Consensus 447 ~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~--~~R~~a~~~l~~l~~~~~~~~-~-~~~i~~~l~~~l~ 522 (585)
...+...++..+..+...... ..+..+..+.+.+.++.. .+-..+++.+|..+....... . -..++..+.+.+.
T Consensus 454 ~~~v~~ev~~~l~~ii~~~~~--~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~ 531 (621)
T 2vgl_A 454 GDYVSEEVWYRVIQIVINRDD--VQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFH 531 (621)
T ss_dssp GGGSCSHHHHHHHHHHGGGCS--CHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHhCChh--HHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhc
Confidence 555666666666666543321 233456666777777642 444566688888766433210 0 0134556666667
Q ss_pred CCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcC--CCCccHHHHHHHHHHHHH
Q 007918 523 DRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTE--DPDVDVRFFATQAIQSID 579 (585)
Q Consensus 523 d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~--D~~~~Vr~~a~~al~~l~ 579 (585)
+.++.||..++.++.+++...+. ..+.+...|..... |.|.+||..|..-+.-+.
T Consensus 532 ~~~~~v~~~~Lta~~Kl~~~~p~--~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 532 LCSVPTRALLLSTYIKFVNLFPE--VKATIQDVLRSDSQLKNADVELQQRAVEYLRLST 588 (621)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHc
Confidence 88999999999999999776532 34556666666666 999999999998776654
No 35
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.77 E-value=4.1e-17 Score=151.74 Aligned_cols=254 Identities=20% Similarity=0.141 Sum_probs=186.5
Q ss_pred hHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHH
Q 007918 279 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 358 (585)
Q Consensus 279 l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 358 (585)
-++.+...++|+++.+|..++..|+.+.. +..++.+..++.|+++.+|..++.+++.+.... .....++
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~---~~~~~l~ 92 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK---KCEDNVF 92 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT---TTHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc---ccchHHH
Confidence 46777788888888888888888887741 345677778888888889998888888876321 1123455
Q ss_pred HHHH-HhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHH
Q 007918 359 PIFL-SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 437 (585)
Q Consensus 359 ~~l~-~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~ 437 (585)
+.+. .+++|+++.||..++.+|+.+....+. ..+.++|.+...++|+++.+|..++.+++.+.. +..+|
T Consensus 93 ~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~--~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~ 162 (280)
T 1oyz_A 93 NILNNMALNDKSACVRATAIESTAQRCKKNPI--YSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIP 162 (280)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc--ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHH
Confidence 6565 356788889999999998887643221 124577888888899999999999888876532 22567
Q ss_pred HHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHH
Q 007918 438 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV 517 (585)
Q Consensus 438 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l 517 (585)
.+...+.|+++.||..|+.+|+.+.. . .+..++.+...+.|+++.+|..++.+++.+.. +..+|.+
T Consensus 163 ~L~~~l~d~~~~vr~~a~~aL~~~~~----~--~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--------~~~~~~L 228 (280)
T 1oyz_A 163 LLINLLKDPNGDVRNWAAFAININKY----D--NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSVL 228 (280)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHTC----C--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------GGGHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhhcc----C--cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--------HhhHHHH
Confidence 77888889999999999999987621 0 23467888888899999999999999988763 5667888
Q ss_pred HhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcC-CCCccHHHHHHHHHHH
Q 007918 518 INASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTE-DPDVDVRFFATQAIQS 577 (585)
Q Consensus 518 ~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~-D~~~~Vr~~a~~al~~ 577 (585)
...++|+ +||..++.+++.+.. +..+|.|..++. +++++++..+..+++.
T Consensus 229 ~~~l~d~--~vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 229 CDELKKN--TVYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp HHHHTSS--SCCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred HHHhcCc--cHHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 8888774 389999999988743 256777777554 5677777777776653
No 36
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.77 E-value=4.9e-17 Score=151.22 Aligned_cols=254 Identities=15% Similarity=0.064 Sum_probs=200.1
Q ss_pred hhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhh
Q 007918 239 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 318 (585)
Q Consensus 239 ~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i 318 (585)
..++.+.+.+.|+++.+|..++..|+.+. ....++.+..++.|+++.+|..++.+|+.+... ... ...+
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~--~~~-~~~l 91 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC--KKC-EDNV 91 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC--TTT-HHHH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccC--------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccc--ccc-chHH
Confidence 35677888889999999999999998765 245788899999999999999999999887531 111 2345
Q ss_pred HHHHH-HhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHH
Q 007918 319 LPCVK-ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 397 (585)
Q Consensus 319 ~~~l~-~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll 397 (585)
++.+. .+.+|+++.||..++.+++.+....+ ...+.++|.+...++|+++.||..++.+|+.+.. +..+
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~ 161 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATI 161 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHH
Confidence 56665 35789999999999999999864322 1234677888899999999999999999998754 3478
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHH
Q 007918 398 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 477 (585)
Q Consensus 398 ~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~ 477 (585)
|.+..++.|+++.+|..++..++.+.. . .+...+.+...+.|+++.||..|+.+|+.+. .+..+|.
T Consensus 162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~----~--~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~--------~~~~~~~ 227 (280)
T 1oyz_A 162 PLLINLLKDPNGDVRNWAAFAININKY----D--NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--------DKRVLSV 227 (280)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTC----C--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT--------CGGGHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhcc----C--cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--------CHhhHHH
Confidence 888899999999999999999987621 1 2346788889999999999999999998874 2457888
Q ss_pred HHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCC-CCchHHHHHHHHHH
Q 007918 478 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD-RVPNIKFNVAKVLQ 537 (585)
Q Consensus 478 l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d-~~~~vR~~~~~~l~ 537 (585)
+...+.|++ +|..++.+++.+.. +..+|.|..++++ +++.++..++..+.
T Consensus 228 L~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 228 LCDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 888888865 89999999998865 4678888888865 46777777776654
No 37
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.76 E-value=5.5e-15 Score=161.39 Aligned_cols=327 Identities=13% Similarity=0.108 Sum_probs=209.2
Q ss_pred hHHHHHHHHHHHHHHHHhCCccc--ccchHHHHHHhcc-----CChHHHHHHHHHHHHHHHHh------hCHHHHHHhhH
Q 007918 253 WRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLR-----DNEAEVRIAAAGKVTKFCRI------LNPELAIQHIL 319 (585)
Q Consensus 253 ~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~ll~-----d~~~~vr~~a~~~l~~l~~~------~~~~~~~~~i~ 319 (585)
+.+|..+++++..+....++... ...+++.+.+.+. ..+..++..+++.|..+++. +....+...++
T Consensus 260 ~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li 339 (960)
T 1wa5_C 260 IKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNIT 339 (960)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHH
Confidence 57888999999888876544221 1234444455443 34567899999999887642 11112223333
Q ss_pred -HHHHHhc-----------------------cCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhc------CCC
Q 007918 320 -PCVKELS-----------------------SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK------DEF 369 (585)
Q Consensus 320 -~~l~~~~-----------------------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------d~~ 369 (585)
+.+...+ .+..+..|.++...+..++..++ +...+.+++.+...+. +.+
T Consensus 340 ~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~ 418 (960)
T 1wa5_C 340 EQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKN 418 (960)
T ss_dssp HHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----C
T ss_pred HHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchh
Confidence 2332221 11224678899999999998887 5566777788777776 567
Q ss_pred hHHHHHHHHHhHHhhhhh-----chh------HHhhhHHHHHHHHhcCC---ChHHHHHHHHHhHHHHHhhChhhHHHHH
Q 007918 370 PDVRLNIISKLDQVNQVI-----GID------LLSQSLLPAIVELAEDR---HWRVRLAIIEYIPLLASQLGVGFFDDKL 435 (585)
Q Consensus 370 ~~vr~~a~~~l~~l~~~~-----~~~------~~~~~ll~~l~~~~~~~---~~~~r~~~~~~l~~l~~~~~~~~~~~~l 435 (585)
+..|.+|+-+++.++... |.. .+.+.+...+...+.++ ++.+|..++++++.+++.+.++ ....+
T Consensus 419 w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~-~l~~~ 497 (960)
T 1wa5_C 419 WKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA-QLIEL 497 (960)
T ss_dssp HHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHH-HHHHH
Confidence 889999999999997532 111 12122222333445666 8999999999999999887654 45668
Q ss_pred HHHHHHHccCCchHHHHHHHHHHHHHHHHhC----------HHH---HHhhhHHHHHhhhcCc-----chHHHHHHHHHH
Q 007918 436 GALCMQWLQDKVYSIRDAAANNLKRLAEEFG----------PEW---AMQHITPQVLEMINNP-----HYLYRMTILRAI 497 (585)
Q Consensus 436 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----------~~~---~~~~ll~~l~~~l~~~-----~~~~R~~a~~~l 497 (585)
++.+.+.+.|++..||.+|+.++..++.... .+. +.+.+++.+..++... .......++.++
T Consensus 498 l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al 577 (960)
T 1wa5_C 498 MPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSI 577 (960)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHH
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHH
Confidence 8889999999999999999999999987422 121 2355666666666553 111335677788
Q ss_pred HHhhhhcChHH--HHhcHHHHHHhh----cCC-CCchHHHHHHHHHHHHHhhhchH---HHHhhHHHHHHHhcCCCCccH
Q 007918 498 SLLAPVMGSEI--TCSRLLPVVINA----SKD-RVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELTEDPDVDV 567 (585)
Q Consensus 498 ~~l~~~~~~~~--~~~~i~~~l~~~----l~d-~~~~vR~~~~~~l~~l~~~~~~~---~~~~~~~~~l~~l~~D~~~~V 567 (585)
+.++...+.+. +...+++.+... .++ .++..+..++.+++.++...+++ .+.+.++|.+...+.....+.
T Consensus 578 ~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~ 657 (960)
T 1wa5_C 578 FRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEF 657 (960)
T ss_dssp HHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhh
Confidence 77776555331 334444444433 333 36677877899999988774432 466778888888665555666
Q ss_pred HHHHHHHHHHHHHh
Q 007918 568 RFFATQAIQSIDHV 581 (585)
Q Consensus 568 r~~a~~al~~l~~~ 581 (585)
...+...+..+.+.
T Consensus 658 ~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 658 IPYVFQIIAFVVEQ 671 (960)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 66676666666543
No 38
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.75 E-value=1.2e-14 Score=158.74 Aligned_cols=521 Identities=10% Similarity=0.046 Sum_probs=316.2
Q ss_pred HHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhcccccccccCCchHHHHHHHHHHhccccccC---------Cc
Q 007918 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVG---------GV 81 (585)
Q Consensus 11 i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~l~~~~~---------~~ 81 (585)
+..++....++|...| |-..|.++.. .++ ....++..+. ..+.+.++|..++-.|.+.+..-. .+
T Consensus 7 l~~~L~~~~spd~~~r--Ae~~L~~~~~--~p~-~~~~L~~il~-~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~ 80 (960)
T 1wa5_C 7 VAKFLAESVIASTAKT--SERNLRQLET--QDG-FGLTLLHVIA-STNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPA 80 (960)
T ss_dssp HHHHHHHTTSGGGHHH--HHHHHHHHHT--STT-HHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCH
T ss_pred HHHHHHHhcCCCHHHH--HHHHHHHhhc--CCC-HHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCH
Confidence 5667777778899888 7777766522 122 2223333332 123467899999998877653211 11
Q ss_pred chHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCC----
Q 007918 82 EHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAP---- 157 (585)
Q Consensus 82 ~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~---- 157 (585)
+....+-..+...+.++.+.+|.....+++.++..--+ .-++.++|.+.+..++.+...+..+..++..+++...
T Consensus 81 ~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~ 159 (960)
T 1wa5_C 81 NNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFR 159 (960)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCC
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 22233333333333445589999999999999886544 3577899999988887777778888888888776432
Q ss_pred -hHHH-------HH----HHHHHHh---hcCCCch---HHH------HHHHHhHHHHHhhhcccch---HHHHHHHHHHh
Q 007918 158 -DILK-------TE----LRSIYTQ---LCQDDMP---MVR------RSAASNLGKFAATVEPAHL---KTDIMSIFEDL 210 (585)
Q Consensus 158 -~~~~-------~~----l~~~l~~---l~~d~~~---~vr------~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~l 210 (585)
++.+ .. +++++.. .+.++.. .+| ..+++++..+...--++.. .+...+.+..+
T Consensus 160 ~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 239 (960)
T 1wa5_C 160 SDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKY 239 (960)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 1111 11 1233322 2444322 233 3344444443221112211 12333443332
Q ss_pred cc----------C-------hhHHHHHHHHHHHHhhccCch--hhhhhhHHHHHHhcc-----CCChHHHHHHHHHHHHH
Q 007918 211 TQ----------D-------DSVRLLAVEGCAALGKLLEPQ--DCVAHILPVIVNFSQ-----DKSWRVRYMVANQLYEL 266 (585)
Q Consensus 211 ~~----------d-------~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~-----d~~~~vR~~~~~~l~~l 266 (585)
+. | +.+|..+++++..+.+.+++. .+.+.+++.+.+.+. ..+..++..+++.+..+
T Consensus 240 l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~ 319 (960)
T 1wa5_C 240 LSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAV 319 (960)
T ss_dssp HSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHH
T ss_pred HcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHH
Confidence 21 1 247888888888888766542 233444444444442 44667888888888876
Q ss_pred HHHhC-Ccc-----cccchH-HHHHHhcc-----------------------CChHHHHHHHHHHHHHHHHhhCHHHHHH
Q 007918 267 CEAVG-PEP-----TRMDLV-PAYVRLLR-----------------------DNEAEVRIAAAGKVTKFCRILNPELAIQ 316 (585)
Q Consensus 267 ~~~~~-~~~-----~~~~l~-~~l~~ll~-----------------------d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 316 (585)
++.-. ... ....++ +.++..+. +..+..|.++...+..++..++ +...+
T Consensus 320 ~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~ 398 (960)
T 1wa5_C 320 TRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTN 398 (960)
T ss_dssp HTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHH
T ss_pred hCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHH
Confidence 53210 011 111222 22222220 1124689999999999999887 44456
Q ss_pred hhHHHHHHhcc------CCcHHHHHHHHHHHHhhchhh-----CHH------HHHHhHHHHHHHhhcCC---ChHHHHHH
Q 007918 317 HILPCVKELSS------DSSQHVRSALASVIMGMAPLL-----GKD------ATIEQLLPIFLSLLKDE---FPDVRLNI 376 (585)
Q Consensus 317 ~i~~~l~~~~~------d~~~~vr~~a~~~l~~l~~~~-----~~~------~~~~~l~~~l~~~l~d~---~~~vr~~a 376 (585)
.+++++...+. +++|+.|.+++.+++.++... +.. ...+.+...+...++|+ ++.||..+
T Consensus 399 ~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a 478 (960)
T 1wa5_C 399 IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDA 478 (960)
T ss_dssp HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHH
Confidence 77777766665 678999999999999997532 111 12222233344455676 89999999
Q ss_pred HHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhC----------hh---hHHHHHHHHHHHHc
Q 007918 377 ISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----------VG---FFDDKLGALCMQWL 443 (585)
Q Consensus 377 ~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~----------~~---~~~~~l~~~l~~~l 443 (585)
++.++.++..+.++. .+.++|.+...+.|++..||..++.++..+.+... .+ .+.+.+++.+..++
T Consensus 479 ~~~lg~~~~~~~~~~-l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll 557 (960)
T 1wa5_C 479 IKYIYTFRNQLTKAQ-LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALI 557 (960)
T ss_dssp HHHHHHTGGGSCHHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCHHH-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHH
Confidence 999999999886554 46788988888899999999999999999887421 22 23455666666666
Q ss_pred cCC-----chHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhh----cC-cchHHHHHHHHHHHHhhhhcChH---H
Q 007918 444 QDK-----VYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMI----NN-PHYLYRMTILRAISLLAPVMGSE---I 508 (585)
Q Consensus 444 ~d~-----~~~vr~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~l----~~-~~~~~R~~a~~~l~~l~~~~~~~---~ 508 (585)
... .......+..+++.++..++.+. +...+++.+...+ ++ .+...+..++++++.++...+++ .
T Consensus 558 ~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~ 637 (960)
T 1wa5_C 558 LKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPL 637 (960)
T ss_dssp HTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH
T ss_pred HhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHH
Confidence 653 11234678888888888776542 2334455444432 33 35677888999999998875543 2
Q ss_pred HHhcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 007918 509 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 540 (585)
Q Consensus 509 ~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~ 540 (585)
+.+.++|.+...+..........+...++.+.
T Consensus 638 ~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 638 LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 46778888888776655566666666665554
No 39
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.75 E-value=1.8e-15 Score=152.76 Aligned_cols=374 Identities=11% Similarity=0.077 Sum_probs=264.7
Q ss_pred hHHHhhhhhchhhHHHHHHHHHHHHHHhh--cCh-hh-HHhhHHHHHHHhhcC-cCccchhhHHhhhHhhcCCCChH---
Q 007918 88 LPPLETLCTVEETCVRDKAVESLCRIGSQ--MRE-SD-LVDWYIPLVKRLAAG-EWFTARVSACGLFHIAYPSAPDI--- 159 (585)
Q Consensus 88 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~--~~~-~~-~~~~l~~~l~~l~~~-~~~~~r~~a~~~l~~~~~~~~~~--- 159 (585)
++-+-..+.++|+..+..|..++..+... .+| +. +..-++|.+.++++. +++.++..|+.++..++..-++.
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 34455566788999999999999987643 222 22 334478888887764 45788999999999998765442
Q ss_pred -HHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcc--c-chHHHHHHHHHHhccC-------hhHHHHHHHHHHHHh
Q 007918 160 -LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--A-HLKTDIMSIFEDLTQD-------DSVRLLAVEGCAALG 228 (585)
Q Consensus 160 -~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~l~~d-------~~vr~~a~~~l~~l~ 228 (585)
.....+|.+..++.++++.+|..|+.+|++++..-.. . ....-.++.+..++.+ ..+...+..++..++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 1234688999999999999999999999999864211 0 1111234455555544 235667777888877
Q ss_pred hccCc---hhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhccCChHHHHHHHHHHH
Q 007918 229 KLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKV 302 (585)
Q Consensus 229 ~~~~~---~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l 302 (585)
..-.+ -.....++|.+.+++.++++.++..++.+|..++..-.. ......++|.+..++.++++.++..++.++
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL 298 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 298 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence 64332 233466889999999999999999999999988743111 112346789999999999999999999999
Q ss_pred HHHHHhhCHH---HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCH---HHHHHhHHHHHHHhhcCCChHHHHHH
Q 007918 303 TKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNI 376 (585)
Q Consensus 303 ~~l~~~~~~~---~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a 376 (585)
+.++..-... ......++.+..++.+++..+|..++.++++++..-.. ......++|.+..++.+.+..+|..|
T Consensus 299 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A 378 (510)
T 3ul1_B 299 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA 378 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred HHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHH
Confidence 9986532111 22345778888999999999999999999999754322 12234588999999999999999999
Q ss_pred HHHhHHhhhhhchhH----HhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhh---Ch-hhHHH-----HHHHHHHHHc
Q 007918 377 ISKLDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GV-GFFDD-----KLGALCMQWL 443 (585)
Q Consensus 377 ~~~l~~l~~~~~~~~----~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~---~~-~~~~~-----~l~~~l~~~l 443 (585)
+.+|..++..-..+. .....++.|.+++.++++.++..+++++..+.+.. +. +.+.. ..+..+..+.
T Consensus 379 a~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq 458 (510)
T 3ul1_B 379 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ 458 (510)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHH
Confidence 999999886533332 22456888899999999999999999888876543 21 11111 1234455566
Q ss_pred cCCchHHHHHHHHHHHHH
Q 007918 444 QDKVYSIRDAAANNLKRL 461 (585)
Q Consensus 444 ~d~~~~vr~~a~~~l~~l 461 (585)
.+++.+|++.|...+..+
T Consensus 459 ~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 459 RHENESVYKASLNLIEKY 476 (510)
T ss_dssp GCSSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 677777777777776555
No 40
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.75 E-value=2.5e-14 Score=157.00 Aligned_cols=560 Identities=9% Similarity=0.041 Sum_probs=325.6
Q ss_pred HHHHHHHhcCh------hHHHHHHHhhhHHHHHHhhC-h----------h---hhhhhccccccc-cc--CC------ch
Q 007918 11 IAVLIDELKND------DIQLRLNSIRRLSTIARALG-E----------E---RTRKELIPFLSE-NN--DD------DD 61 (585)
Q Consensus 11 i~~l~~~l~~~------~~~~R~~a~~~l~~~~~~~~-~----------~---~~~~~l~~~l~~-~~--d~------~~ 61 (585)
+..++..++++ ++..+..++..+..+++... . + .....+++++.+ .. +. +.
T Consensus 124 l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~ 203 (971)
T 2x1g_F 124 IEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAY 203 (971)
T ss_dssp --HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccch
Confidence 66777777765 67788888888887775221 0 0 011234444433 11 11 12
Q ss_pred HHHHHHHHHHhccccc--cCCcchHHhchHHHhhh----h-----------hchhhHHHHHHHHHHHHHHhhcChhh---
Q 007918 62 EVLLAMAEELGVFIPY--VGGVEHAHVLLPPLETL----C-----------TVEETCVRDKAVESLCRIGSQMRESD--- 121 (585)
Q Consensus 62 ~vr~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~l----~-----------~~~~~~vr~~a~~~l~~l~~~~~~~~--- 121 (585)
+++..+.++++.+..+ ++.. ....+++.+..+ + .++++.+|..|++++..+...-.+++
T Consensus 204 ~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~ 282 (971)
T 2x1g_F 204 SNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPK 282 (971)
T ss_dssp HHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHH
T ss_pred hHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHhhhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHH
Confidence 7888888988766552 2222 334455544431 1 13678999999999999987533211
Q ss_pred HHhhHHHHHHH----hh---cCcC---ccchhhHHhhhHhhcCCCC--------------hHHHHHHHHHHHhhcCC---
Q 007918 122 LVDWYIPLVKR----LA---AGEW---FTARVSACGLFHIAYPSAP--------------DILKTELRSIYTQLCQD--- 174 (585)
Q Consensus 122 ~~~~l~~~l~~----l~---~~~~---~~~r~~a~~~l~~~~~~~~--------------~~~~~~l~~~l~~l~~d--- 174 (585)
....++|.+.. +. .+++ .......+.++..++.... ......+++.+..+...
T Consensus 283 ~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~ 362 (971)
T 2x1g_F 283 TAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGI 362 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCC
Confidence 22223333322 11 2223 2445555666555442211 12344556666665532
Q ss_pred --CchHHHHHHHHhHHHHHhhh-c------ccchH-------HHHHHHHHHhc-c---------C-------hhHHHHHH
Q 007918 175 --DMPMVRRSAASNLGKFAATV-E------PAHLK-------TDIMSIFEDLT-Q---------D-------DSVRLLAV 221 (585)
Q Consensus 175 --~~~~vr~~a~~~l~~l~~~~-~------~~~~~-------~~l~~~l~~l~-~---------d-------~~vr~~a~ 221 (585)
.+..+...++..+..++... . ..... ..+++.+...+ . | .+.|..+.
T Consensus 363 ~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~ 442 (971)
T 2x1g_F 363 YPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDIS 442 (971)
T ss_dssp TTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHH
T ss_pred CCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHH
Confidence 46788999998888876622 1 11111 22222222211 1 1 13678888
Q ss_pred HHHHHHhhccCchhhhhhhHHHHHHhccC-----CChHHHHHHHHHHHHHHHHhCCccc--ccchHHHHHHhc-cCChHH
Q 007918 222 EGCAALGKLLEPQDCVAHILPVIVNFSQD-----KSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLL-RDNEAE 293 (585)
Q Consensus 222 ~~l~~l~~~~~~~~~~~~~~~~l~~~~~d-----~~~~vR~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~ll-~d~~~~ 293 (585)
..+..++...+ +...+.+++.+...+.. .+|+.|.+++.+++.+++.+..... ...+++.+..+. .|.++.
T Consensus 443 ~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~ 521 (971)
T 2x1g_F 443 DTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVK 521 (971)
T ss_dssp HHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHH
T ss_pred HHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHH
Confidence 88888888776 45566677776665543 7899999999999999877654321 123455443443 256799
Q ss_pred HHHHHHHHHHHHHHhhCHH-HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHH--HHHHhHHHHHHHhhcC--C
Q 007918 294 VRIAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKD--E 368 (585)
Q Consensus 294 vr~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d--~ 368 (585)
||..++..++.+++.+... .+.+.+++.+...+ | ++|+..++.++..+++..+.. .+.+.++..+...+.. .
T Consensus 522 vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~ 598 (971)
T 2x1g_F 522 LLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRM 598 (971)
T ss_dssp HHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCC
Confidence 9999999999999987643 34566777777767 3 789999999999999776543 3455666666666766 3
Q ss_pred ChHHHHHHHHHhHHhhhhhchhHH---hhhHHHHH----HHHhcCC--ChHHHHHHHHHhHH---HHHhhChh-------
Q 007918 369 FPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAI----VELAEDR--HWRVRLAIIEYIPL---LASQLGVG------- 429 (585)
Q Consensus 369 ~~~vr~~a~~~l~~l~~~~~~~~~---~~~ll~~l----~~~~~~~--~~~~r~~~~~~l~~---l~~~~~~~------- 429 (585)
+...+..+.++++.++..++.+.. .+.+++.+ ....+.. +...+...+.+++. +...++..
T Consensus 599 ~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~ 678 (971)
T 2x1g_F 599 KNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATD 678 (971)
T ss_dssp CHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC--------
T ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCccccc
Confidence 578999999999999887653221 12333333 3333332 33344444444444 44433321
Q ss_pred --------hHHHHHHHHHHHHccC--CchHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhcCcchHHHHHHHHHH
Q 007918 430 --------FFDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYRMTILRAI 497 (585)
Q Consensus 430 --------~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~~~~~~~R~~a~~~l 497 (585)
.+.+.++|.+...+.+ .+..|.+.++.+++.++..+|.++ +.+.+++.+...++.... ..++..+
T Consensus 679 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~ 755 (971)
T 2x1g_F 679 QPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC---APTLEIS 755 (971)
T ss_dssp -----CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC---HHHHHHH
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc---hHHHHHH
Confidence 1234467777666643 366899999999999998876653 345555555555544332 3578888
Q ss_pred HHhhhhcChHH--------HHhcHHHHHHhhcCC-------CCchHHHHHHHHHHHHHhhhchHHH-----HhhHHHHHH
Q 007918 498 SLLAPVMGSEI--------TCSRLLPVVINASKD-------RVPNIKFNVAKVLQSLIPIVDQSMV-----EKTIRPCLV 557 (585)
Q Consensus 498 ~~l~~~~~~~~--------~~~~i~~~l~~~l~d-------~~~~vR~~~~~~l~~l~~~~~~~~~-----~~~~~~~l~ 557 (585)
+.++..+|.+. +...+...+...++. ..|+++......+..+....+...+ ...+++...
T Consensus 756 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~ 835 (971)
T 2x1g_F 756 KTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQ 835 (971)
T ss_dssp HHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHH
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHH
Confidence 88888777631 122223333333332 3789999999999998876554322 345555555
Q ss_pred HhcCCCCccHHHHHHHHHHHH
Q 007918 558 ELTEDPDVDVRFFATQAIQSI 578 (585)
Q Consensus 558 ~l~~D~~~~Vr~~a~~al~~l 578 (585)
..+.-+++.....+...+..+
T Consensus 836 ~~l~~~~~~~~~s~~~fl~~~ 856 (971)
T 2x1g_F 836 RGMTLPESGAIRNSIQFLTHF 856 (971)
T ss_dssp HHHTSSCSSHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHH
Confidence 544445666655666655443
No 41
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.74 E-value=2.6e-15 Score=152.51 Aligned_cols=375 Identities=11% Similarity=0.068 Sum_probs=265.9
Q ss_pred chHHHhhhhhchhhHHHHHHHHHHHHHHhhc--Ch-h-hHHhhHHHHHHHhhc-CcCccchhhHHhhhHhhcCCCChH--
Q 007918 87 LLPPLETLCTVEETCVRDKAVESLCRIGSQM--RE-S-DLVDWYIPLVKRLAA-GEWFTARVSACGLFHIAYPSAPDI-- 159 (585)
Q Consensus 87 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~--~~-~-~~~~~l~~~l~~l~~-~~~~~~r~~a~~~l~~~~~~~~~~-- 159 (585)
.++.+...+.++++..+..|...+..+...- ++ + .+..-++|.+.+++. ++++.++..|+.++..++.+-++.
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3455566677889999999999998875432 22 2 234457888888775 446788999999999998765443
Q ss_pred --HHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcc--cc-hHHHHHHHHHHhccC-------hhHHHHHHHHHHHH
Q 007918 160 --LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP--AH-LKTDIMSIFEDLTQD-------DSVRLLAVEGCAAL 227 (585)
Q Consensus 160 --~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~-~~~~l~~~l~~l~~d-------~~vr~~a~~~l~~l 227 (585)
.....+|.+..++.++++.+|..|+.+|++++..-.. .. ...-.++.+..++.+ ..+...++.++..+
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 2235789999999999999999999999999864211 11 111234455555544 23566677788887
Q ss_pred hhccCc---hhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhccCChHHHHHHHHHH
Q 007918 228 GKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGK 301 (585)
Q Consensus 228 ~~~~~~---~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~d~~~~vr~~a~~~ 301 (585)
+..-.+ -.....++|.+.+++.++++.++..++.+|..++..... ......++|.++.++.++++.++..++.+
T Consensus 237 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~a 316 (529)
T 3tpo_A 237 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 316 (529)
T ss_dssp HCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred HhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHH
Confidence 764332 233466889999999999999999999999988753211 11234688999999999999999999999
Q ss_pred HHHHHHhhCHH---HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCH---HHHHHhHHHHHHHhhcCCChHHHHH
Q 007918 302 VTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLN 375 (585)
Q Consensus 302 l~~l~~~~~~~---~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~ 375 (585)
++.++..-... ......++.+..++.++++.+|..++.++++++..-.. ......++|.+..++.+.+..+|..
T Consensus 317 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~ 396 (529)
T 3tpo_A 317 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKA 396 (529)
T ss_dssp HHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHH
Confidence 99987532111 22345788899999999999999999999999754321 1123458899999999999999999
Q ss_pred HHHHhHHhhhhhchhH----HhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhh---Ch-hhHHHH-----HHHHHHHH
Q 007918 376 IISKLDQVNQVIGIDL----LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GV-GFFDDK-----LGALCMQW 442 (585)
Q Consensus 376 a~~~l~~l~~~~~~~~----~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~---~~-~~~~~~-----l~~~l~~~ 442 (585)
|+.+|+.++..-..+. .....+|.|.+++.++++.++..+++++..+.+.. +. ..+... .+..+..+
T Consensus 397 A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L 476 (529)
T 3tpo_A 397 AAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL 476 (529)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHH
Confidence 9999999886543332 22356888899999999999999988888876543 21 111111 13344445
Q ss_pred ccCCchHHHHHHHHHHHHH
Q 007918 443 LQDKVYSIRDAAANNLKRL 461 (585)
Q Consensus 443 l~d~~~~vr~~a~~~l~~l 461 (585)
..+++.+|+..|...+..+
T Consensus 477 q~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 477 QRHENESVYKASLNLIEKY 495 (529)
T ss_dssp GGCSSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHH
Confidence 5667777777777776655
No 42
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.72 E-value=1.2e-14 Score=159.61 Aligned_cols=480 Identities=10% Similarity=0.004 Sum_probs=274.9
Q ss_pred chhhHHHHHHHHHHHHHHhh----cChh---hHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChHHHHHHHHHHH
Q 007918 97 VEETCVRDKAVESLCRIGSQ----MRES---DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYT 169 (585)
Q Consensus 97 ~~~~~vr~~a~~~l~~l~~~----~~~~---~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~ 169 (585)
+.++.+|..|+..|...++. ++++ .+++.+++.+.....+ ...+|...+.++..++.+..+ .+.++++.+.
T Consensus 51 ~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~-~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~ 128 (971)
T 2x1g_F 51 GKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGG-PKIVLNRLCISLGAYIVHMLG-EWPGAIEEVI 128 (971)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHTTC-C------HHH
T ss_pred CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHccc-cccHHHHHHH
Confidence 34555555555555554432 2221 2334445544443322 244555555555555443322 4444555555
Q ss_pred hhcCCC------chHHHHHHHHhHHHHHhhhc-c-------------cchHHHHHHHHHHhccC---h-------hHHHH
Q 007918 170 QLCQDD------MPMVRRSAASNLGKFAATVE-P-------------AHLKTDIMSIFEDLTQD---D-------SVRLL 219 (585)
Q Consensus 170 ~l~~d~------~~~vr~~a~~~l~~l~~~~~-~-------------~~~~~~l~~~l~~l~~d---~-------~vr~~ 219 (585)
..++.+ ++..+..+...|..+.+.+. . ....+.+++++..++++ + .++..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~ 208 (971)
T 2x1g_F 129 NTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNR 208 (971)
T ss_dssp HHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHH
Confidence 444432 34455555555555553211 0 01224455555544432 2 68889
Q ss_pred HHHHHHHHhh--ccCchhhhhhhHHHHHHh----c-----------cCCChHHHHHHHHHHHHHHHHhCCcc---cccch
Q 007918 220 AVEGCAALGK--LLEPQDCVAHILPVIVNF----S-----------QDKSWRVRYMVANQLYELCEAVGPEP---TRMDL 279 (585)
Q Consensus 220 a~~~l~~l~~--~~~~~~~~~~~~~~l~~~----~-----------~d~~~~vR~~~~~~l~~l~~~~~~~~---~~~~l 279 (585)
++.++..... ..+.. ....+++.+..+ . .++++.+|..++.++..+...-.... ....+
T Consensus 209 al~~l~~~~~~~~ip~~-~~~~ll~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l 287 (971)
T 2x1g_F 209 AVKCVGTWIKNIGYTIE-GCVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVL 287 (971)
T ss_dssp HHHHHHHHHHHSCCCGG-GHHHHHHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHH
T ss_pred HHHHHHHHHhhCCcCcc-ccccHHHHHHhhhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHH
Confidence 9999988777 35544 455666765551 1 12567899999999999886421110 11233
Q ss_pred HHHHHHh-------ccCChH---HHHHHHHHHHHHHHHhhCH-------------HHHHHhhHHHHHHhccC-----CcH
Q 007918 280 VPAYVRL-------LRDNEA---EVRIAAAGKVTKFCRILNP-------------ELAIQHILPCVKELSSD-----SSQ 331 (585)
Q Consensus 280 ~~~l~~l-------l~d~~~---~vr~~a~~~l~~l~~~~~~-------------~~~~~~i~~~l~~~~~d-----~~~ 331 (585)
+|.+..+ ..+.+. +.....++.+..+++.... ......+++.+...... .++
T Consensus 288 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~ 367 (971)
T 2x1g_F 288 IKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEE 367 (971)
T ss_dssp HHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTC
T ss_pred HHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcch
Confidence 4443331 233342 5666677777776643111 11223445555554433 467
Q ss_pred HHHHHHHHHHHhhchhh-C--------H-----HHHHHhHHHHHHHhhcC-C-------C-------hHHHHHHHHHhHH
Q 007918 332 HVRSALASVIMGMAPLL-G--------K-----DATIEQLLPIFLSLLKD-E-------F-------PDVRLNIISKLDQ 382 (585)
Q Consensus 332 ~vr~~a~~~l~~l~~~~-~--------~-----~~~~~~l~~~l~~~l~d-~-------~-------~~vr~~a~~~l~~ 382 (585)
++...++..+..+++.. . . ......+++.+...+.- + + ...|..+...+..
T Consensus 368 ~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~ 447 (971)
T 2x1g_F 368 SCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMY 447 (971)
T ss_dssp TTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHH
Confidence 78888888877776522 1 0 12234455555544421 1 1 2467888888888
Q ss_pred hhhhhchhHHhhhHHHHHHHHhcC-----CChHHHHHHHHHhHHHHHhhChh--hHHHHHHHHHHHHc-cCCchHHHHHH
Q 007918 383 VNQVIGIDLLSQSLLPAIVELAED-----RHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWL-QDKVYSIRDAA 454 (585)
Q Consensus 383 l~~~~~~~~~~~~ll~~l~~~~~~-----~~~~~r~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l-~d~~~~vr~~a 454 (585)
++..+|.+ ..+.+++.+...+.. .+|+.|.+++.+++.+++.+... ...+.+++.+..+. .|+++.||..+
T Consensus 448 ~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a 526 (971)
T 2x1g_F 448 CYDVLNDY-ILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTA 526 (971)
T ss_dssp HHTTCTTH-HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHH
T ss_pred HHHHHhHH-HHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHH
Confidence 88877733 335666666665543 79999999999999998766532 23345666444443 25789999999
Q ss_pred HHHHHHHHHHhCHH-HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHH--HHhcHHHHHHhhcCC--CCchHH
Q 007918 455 ANNLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKD--RVPNIK 529 (585)
Q Consensus 455 ~~~l~~l~~~~~~~-~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~l~d--~~~~vR 529 (585)
+.+++.++..++.. .+.+.+++.+...+ + ..++..|+.++..+++.++... +.+.++..+...++. -....|
T Consensus 527 ~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~ 603 (971)
T 2x1g_F 527 LETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDS 603 (971)
T ss_dssp HHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHH
Confidence 99999999988743 24566778887777 3 6789999999999998776542 456777777777766 357899
Q ss_pred HHHHHHHHHHHhhhchH----HHHh---hHHHHHHHhcCCC--CccHHHHHHHHHHHHHHhhc
Q 007918 530 FNVAKVLQSLIPIVDQS----MVEK---TIRPCLVELTEDP--DVDVRFFATQAIQSIDHVMM 583 (585)
Q Consensus 530 ~~~~~~l~~l~~~~~~~----~~~~---~~~~~l~~l~~D~--~~~Vr~~a~~al~~l~~~l~ 583 (585)
..+.++++.++...++. .+.. .++..+..+...+ +.+-+.....+++.++.+++
T Consensus 604 ~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~ 666 (971)
T 2x1g_F 604 VRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFS 666 (971)
T ss_dssp HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHh
Confidence 99999999998766522 2222 2223333333332 44456667777777776643
No 43
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.72 E-value=8.7e-13 Score=144.86 Aligned_cols=564 Identities=12% Similarity=0.079 Sum_probs=341.4
Q ss_pred CcccHHHHHHH-hcChhHHHHHHHhhhHHHHHHhhChhhhhhhcccccccccCCchHHHHHHHHHHhccccc----cCCc
Q 007918 7 PLYPIAVLIDE-LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGV 81 (585)
Q Consensus 7 ~~~~i~~l~~~-l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~l~~~----~~~~ 81 (585)
++..+..++.. ..++|+..|..|-..|.++-+.-+ .+..+..++. .+.++++|..++..|.+.+.. ++.+
T Consensus 22 ~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~---~~~~~~~lL~--~~~~~~vr~~aa~~L~~~i~~~w~~l~~~ 96 (963)
T 2x19_B 22 TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQ---AWHFSWQLLQ--PDKVPEIQYFGASALHIKISRYWSDIPTD 96 (963)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTT---HHHHHHHHTS--TTSCHHHHHHHHHHHHHHHHHCGGGSCGG
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHH---HHHHHHHHhc--CCCchHHHHHHHHHHHHHHHhCHHhCCHH
Confidence 34446666766 446899999999988887654322 2323333332 245789999999888765442 2211
Q ss_pred c---hHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcC-----cCccchhhHHhhhHhhc
Q 007918 82 E---HAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAG-----EWFTARVSACGLFHIAY 153 (585)
Q Consensus 82 ~---~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~-----~~~~~r~~a~~~l~~~~ 153 (585)
+ ....++..+.... +..+.||.....++..++...-++. ++.+++.+....++ ++...+..+..++..+.
T Consensus 97 ~~~~ir~~ll~~l~~~~-~~~~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ 174 (963)
T 2x19_B 97 QYESLKAQLFTQITRFA-SGSKIVLTRLCVALASLALSMMPDA-WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLP 174 (963)
T ss_dssp GHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHCC------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCH
Confidence 2 1233444443322 2358899999999999988755543 66677777776654 13334555555544433
Q ss_pred C----C-C--------C---hHHHHHHHHHHHhhcCCCch--HHHHHHHHhHHHHHhhhccc-chHHHHHHHHHHhccCh
Q 007918 154 P----S-A--------P---DILKTELRSIYTQLCQDDMP--MVRRSAASNLGKFAATVEPA-HLKTDIMSIFEDLTQDD 214 (585)
Q Consensus 154 ~----~-~--------~---~~~~~~l~~~l~~l~~d~~~--~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~l~~d~ 214 (585)
+ . . . ....+.+++++..++.+.+. .++..+.+++..... .+.. .....+++.+...+.++
T Consensus 175 ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~~~ 253 (963)
T 2x19_B 175 EEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQDS 253 (963)
T ss_dssp HHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTTST
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhCCc
Confidence 1 1 0 0 12456777777777765432 488888888877665 3221 12266777777777778
Q ss_pred hHHHHHHHHHHHHhhccCchh---hhhhhHHHHHH-------hccCCChHHHHHHHHHHHHHHHHhCCcc--------cc
Q 007918 215 SVRLLAVEGCAALGKLLEPQD---CVAHILPVIVN-------FSQDKSWRVRYMVANQLYELCEAVGPEP--------TR 276 (585)
Q Consensus 215 ~vr~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~-------~~~d~~~~vR~~~~~~l~~l~~~~~~~~--------~~ 276 (585)
++|..+++++..+.....+.. ....+++.+.. ...+.+.......++.+..++....... ..
T Consensus 254 ~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~ 333 (963)
T 2x19_B 254 ELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSF 333 (963)
T ss_dssp TTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred hHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHH
Confidence 899999999999987543222 12222232222 1223333455556677777664322111 11
Q ss_pred cchHHHHHHhccC-----ChHHHHHHHHHHHHHHHHhhC-------HH------HHHHhhHHHHHHhccCC---------
Q 007918 277 MDLVPAYVRLLRD-----NEAEVRIAAAGKVTKFCRILN-------PE------LAIQHILPCVKELSSDS--------- 329 (585)
Q Consensus 277 ~~l~~~l~~ll~d-----~~~~vr~~a~~~l~~l~~~~~-------~~------~~~~~i~~~l~~~~~d~--------- 329 (585)
..+++.+.....+ .+++++..++..+..+++... +. .+...+++.+...+..+
T Consensus 334 ~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~ 413 (963)
T 2x19_B 334 LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWS 413 (963)
T ss_dssp HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSC
T ss_pred HHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCC
Confidence 2345555555553 356678888888888776321 10 11223333333222111
Q ss_pred -----cH-HHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhh----cCCChHHHHHHHHHhHHhhhhhchhH--HhhhHH
Q 007918 330 -----SQ-HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL----KDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLL 397 (585)
Q Consensus 330 -----~~-~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~ll 397 (585)
++ ..|..+...+..++...+. ...+.+.+.+...+ .+.++..+.+++.+++.+++....+. +.+.++
T Consensus 414 ~de~~~~~~~r~~~~~~L~~~~~~~~~-~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~ 492 (963)
T 2x19_B 414 SDEKEQFRIYRVDISDTLMYVYEMLGA-ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLI 492 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccH-HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHH
Confidence 11 3467777888888877773 44566777777777 66788999999999999998765421 223344
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHhhCh-hhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHH--HHhhh
Q 007918 398 PAIVELAEDRHWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHI 474 (585)
Q Consensus 398 ~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l 474 (585)
+.+..+ .++++.+|..++.+++.+.+.++. ..+.+.+++.+...+.+ +.|+..|+.++..+++..+... +.+.+
T Consensus 493 ~~l~~l-~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~i 569 (963)
T 2x19_B 493 GLIPRI-SISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANI 569 (963)
T ss_dssp HHGGGS-CCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHH
T ss_pred HHHHhC-CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 433222 346788999999999999887642 23445577888888876 7899999999999998655431 23556
Q ss_pred HHHHHhhhcC--cchHHHHHHHHHHHHhhhhcChHH---HHhcHHHHHHhhc----CC-CCchHHH---HHHHHHHHHHh
Q 007918 475 TPQVLEMINN--PHYLYRMTILRAISLLAPVMGSEI---TCSRLLPVVINAS----KD-RVPNIKF---NVAKVLQSLIP 541 (585)
Q Consensus 475 l~~l~~~l~~--~~~~~R~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~l----~d-~~~~vR~---~~~~~l~~l~~ 541 (585)
+..+...+.. -+...|..++++++.++...+.+. +...+++.+...+ +. .+++.|. ..+.+++.++.
T Consensus 570 l~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~ 649 (963)
T 2x19_B 570 VAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFT 649 (963)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6666666654 356889999999999987766222 3455555544433 22 2444444 45566666655
Q ss_pred hhch------------------------HHHHhhHHHHHHHhcC--CCCccHHHHHHHHHHHHHHhh
Q 007918 542 IVDQ------------------------SMVEKTIRPCLVELTE--DPDVDVRFFATQAIQSIDHVM 582 (585)
Q Consensus 542 ~~~~------------------------~~~~~~~~~~l~~l~~--D~~~~Vr~~a~~al~~l~~~l 582 (585)
.++. ..+...++|.+..++. -.+..+...++++++.+...+
T Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~ 716 (963)
T 2x19_B 650 TLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTL 716 (963)
T ss_dssp HCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhh
Confidence 5431 1245566676665432 235688888888888876544
No 44
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.69 E-value=3.8e-13 Score=147.69 Aligned_cols=520 Identities=12% Similarity=0.058 Sum_probs=321.0
Q ss_pred ccccccc-ccCCchHHHHHHHHHHhccccccCCcchHHhchHHHhhhhhchhhHHHHHHHHHHHHHHhh----cChh---
Q 007918 49 LIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQ----MRES--- 120 (585)
Q Consensus 49 l~~~l~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~----~~~~--- 120 (585)
+...+.. ....+++.|+.+-+.|..+-. .|+.+.....++. .+.++.+|..|+..|...++. ++++
T Consensus 26 l~~~l~~l~~~~~~~~r~~A~~~L~~~~~---~p~~~~~~~~lL~---~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~ 99 (963)
T 2x19_B 26 VEKALHQLYYDPNIENKNLAQKWLMQAQV---SPQAWHFSWQLLQ---PDKVPEIQYFGASALHIKISRYWSDIPTDQYE 99 (963)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHH---STTHHHHHHHHTS---TTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhc---CHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHhCHHhCCHHHHH
Confidence 3344444 334578889999999988754 3555554444432 467889999999999998763 3433
Q ss_pred hHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChHHHHHHHHHHHhhcCC-----CchHHHHHHHHhHHHHHhhhc
Q 007918 121 DLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQD-----DMPMVRRSAASNLGKFAATVE 195 (585)
Q Consensus 121 ~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d-----~~~~vr~~a~~~l~~l~~~~~ 195 (585)
.+++.+++.+.+... ....+|...+.++..++...-+..+.++++.+...+++ +++..+..+...|..+.+...
T Consensus 100 ~ir~~ll~~l~~~~~-~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~ 178 (963)
T 2x19_B 100 SLKAQLFTQITRFAS-GSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQ 178 (963)
T ss_dssp HHHHHHHHHHHHTTT-SCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHh
Confidence 345667777766432 24678888888888876653334466777777777765 356678888888888875431
Q ss_pred c---------------cchHHHHHHHHHHhccC---h-hHHHHHHHHHHHHhhccCch-hhhhhhHHHHHHhccCCChHH
Q 007918 196 P---------------AHLKTDIMSIFEDLTQD---D-SVRLLAVEGCAALGKLLEPQ-DCVAHILPVIVNFSQDKSWRV 255 (585)
Q Consensus 196 ~---------------~~~~~~l~~~l~~l~~d---~-~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~~~d~~~~v 255 (585)
. ....+.+++++..++.+ + .++..++.++..... .+.. .....+++.+.+.+. ++.+
T Consensus 179 ~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~--~~~~ 255 (963)
T 2x19_B 179 TSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ--DSEL 255 (963)
T ss_dssp TCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT--STTT
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC--CchH
Confidence 1 12345667777776655 2 478888888876665 3321 122556777777664 5778
Q ss_pred HHHHHHHHHHHHHHhCCcccc---cchHHHHHH-------hccCChHHHHHHHHHHHHHHHHhhCH--------HHHHHh
Q 007918 256 RYMVANQLYELCEAVGPEPTR---MDLVPAYVR-------LLRDNEAEVRIAAAGKVTKFCRILNP--------ELAIQH 317 (585)
Q Consensus 256 R~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~-------ll~d~~~~vr~~a~~~l~~l~~~~~~--------~~~~~~ 317 (585)
|..++.++..+.......... ..+++.+.. ...+.+.+.....++.+..++..... ......
T Consensus 256 ~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~ 335 (963)
T 2x19_B 256 FDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLA 335 (963)
T ss_dssp HHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHH
Confidence 999999999887632211111 122332222 12233445555566666666543211 111234
Q ss_pred hHHHHHHhccC-----CcHHHHHHHHHHHHhhchhhC----------H---HHHHHhHHHHHHHhhcCCC----------
Q 007918 318 ILPCVKELSSD-----SSQHVRSALASVIMGMAPLLG----------K---DATIEQLLPIFLSLLKDEF---------- 369 (585)
Q Consensus 318 i~~~l~~~~~d-----~~~~vr~~a~~~l~~l~~~~~----------~---~~~~~~l~~~l~~~l~d~~---------- 369 (585)
++..+.....+ .++.+...++..+..++.... . ..+...+++.+...+..++
T Consensus 336 ~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~d 415 (963)
T 2x19_B 336 LVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSD 415 (963)
T ss_dssp HHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHH
T ss_pred HHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChh
Confidence 55555555553 345566666666555554210 0 1123344555544443211
Q ss_pred -----hHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHh----cCCChHHHHHHHHHhHHHHHhhCh--hhHHHHHHHH
Q 007918 370 -----PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA----EDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGAL 438 (585)
Q Consensus 370 -----~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~----~~~~~~~r~~~~~~l~~l~~~~~~--~~~~~~l~~~ 438 (585)
...|..+...+..++...|.+.+ +.+++.+...+ .+.+|+.|.+++.+++.+++.+.. ..+...+++.
T Consensus 416 e~~~~~~~r~~~~~~L~~~~~~~~~~~l-~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~ 494 (963)
T 2x19_B 416 EKEQFRIYRVDISDTLMYVYEMLGAELL-SNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGL 494 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHH-HHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHH-HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHH
Confidence 12367777788887777774433 55666666666 678999999999999999887653 2233455564
Q ss_pred HHHHccCCchHHHHHHHHHHHHHHHHhCHH-HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHH--HHhcHHH
Q 007918 439 CMQWLQDKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLP 515 (585)
Q Consensus 439 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~ 515 (585)
+.. +.++++.||..++.+++.+...++.+ .+.+.+++.+...+.+ ..+|..|+.++..+++.++... +.+.++.
T Consensus 495 l~~-l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~ 571 (963)
T 2x19_B 495 IPR-ISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVA 571 (963)
T ss_dssp GGG-SCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHH
T ss_pred HHh-CCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 433 34457889999999999999876542 3567888988888866 6899999999999998665432 4566667
Q ss_pred HHHhhcCC--CCchHHHHHHHHHHHHHhhhchH---HHHhhHHHHHHH----hc-CCCCccHHHHHHH---HHHHHHHhh
Q 007918 516 VVINASKD--RVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVE----LT-EDPDVDVRFFATQ---AIQSIDHVM 582 (585)
Q Consensus 516 ~l~~~l~d--~~~~vR~~~~~~l~~l~~~~~~~---~~~~~~~~~l~~----l~-~D~~~~Vr~~a~~---al~~l~~~l 582 (585)
.+...+.. -....|..+.++++.++...+.. .+...+++.+.. +. ...+++.+..... ++..+.+.+
T Consensus 572 ~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~ 651 (963)
T 2x19_B 572 VSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTL 651 (963)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 67666664 35689999999999998766522 233344433332 22 2235555554444 444444444
No 45
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.69 E-value=2.6e-15 Score=135.94 Aligned_cols=186 Identities=15% Similarity=0.160 Sum_probs=137.0
Q ss_pred hHHHHHHhccCChHHHHHHHHHHHHHHHHhhCH---HHHHHhhHHHHHHhcc-CCcHHHHHHHHHHHHhhchhhCHH--H
Q 007918 279 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKD--A 352 (585)
Q Consensus 279 l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~--~ 352 (585)
+-+.+.+.+.|.+|..|..++..+..+++..+. ..+ ..+++.+...+. |++..||..++.+++.++..++.. .
T Consensus 16 l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 16 MPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp SCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred CCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 334455566666666666666666666654211 111 345566666663 777777777777777777666543 3
Q ss_pred HHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChh---
Q 007918 353 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--- 429 (585)
Q Consensus 353 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~--- 429 (585)
+.+.++|.+...++|.++.||.++..++..+....+. +.++|.+...+++++|.+|..++.+++.+....+++
T Consensus 95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 5667888888888888888888888888888876653 457788888889999999999999999987665432
Q ss_pred -hHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHH
Q 007918 430 -FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 469 (585)
Q Consensus 430 -~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 469 (585)
.+.+.++|.+..++.|++++||.+|..+++.++...|.+.
T Consensus 171 ~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~ 211 (242)
T 2qk2_A 171 KKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKA 211 (242)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHH
Confidence 2446789999999999999999999999999999999763
No 46
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.68 E-value=3.2e-15 Score=135.34 Aligned_cols=196 Identities=16% Similarity=0.133 Sum_probs=163.0
Q ss_pred CchhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCc--ccccchHHHHHHhcc-CChHHHHHHHHHHHHHHHHh
Q 007918 232 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRI 308 (585)
Q Consensus 232 ~~~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~ll~-d~~~~vr~~a~~~l~~l~~~ 308 (585)
++......+.+.+.+.++|.+|..|..++..|..++...+.. .....+++.+...+. |.+..||..++.+++.++..
T Consensus 8 ~~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~ 87 (242)
T 2qk2_A 8 DPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG 87 (242)
T ss_dssp SCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred CcccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 333444555566777889999999999999999999875431 123468888999994 99999999999999999998
Q ss_pred hCHH--HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhh
Q 007918 309 LNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 386 (585)
Q Consensus 309 ~~~~--~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 386 (585)
+++. .+.+.++|.+...+.|++..||.++..++..+....+ .+.++|.+...+++.++.+|..++..++.+...
T Consensus 88 l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~ 163 (242)
T 2qk2_A 88 LAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALTR 163 (242)
T ss_dssp HGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 8765 4557899999999999999999999999999987765 356788899999999999999999999998766
Q ss_pred hchh----HHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhH
Q 007918 387 IGID----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 431 (585)
Q Consensus 387 ~~~~----~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~ 431 (585)
.+++ ...+.++|.+...+.|+++.+|..+..+++.+...+|.+.+
T Consensus 164 ~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~ 212 (242)
T 2qk2_A 164 TQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAV 212 (242)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHH
Confidence 5432 23467899999999999999999999999999999997543
No 47
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.66 E-value=6.3e-15 Score=129.44 Aligned_cols=188 Identities=15% Similarity=0.215 Sum_probs=149.2
Q ss_pred HhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHH
Q 007918 355 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK 434 (585)
Q Consensus 355 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~ 434 (585)
+...+.+...++|+++.+|..|+.+|+.+.. +..++.+...+.|+++.+|..++..++.+. .. .
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~----~~----~ 76 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIG----DE----R 76 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----CG----G
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC----CH----H
Confidence 3455777888889999999999998887653 246677888888999999999988887653 21 2
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHH
Q 007918 435 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLL 514 (585)
Q Consensus 435 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~ 514 (585)
..+.+...+.|+++.||..|+.+|+.+.. +..++.+...+.|+++.+|..++.+++.+.. ...+
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~ 140 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV 140 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence 46777788899999999999999987631 3467888888899999999999999988754 4567
Q ss_pred HHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhh
Q 007918 515 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 582 (585)
Q Consensus 515 ~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~~l 582 (585)
+.+..+++|+++.||..++.+|+.+.. +...+.|..++.|+++.||..|.++++.+...+
T Consensus 141 ~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~~~ 200 (201)
T 3ltj_A 141 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSLI 200 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhc
Confidence 888899999999999999999998832 357778888888899999999999999887665
No 48
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.66 E-value=2e-12 Score=142.42 Aligned_cols=339 Identities=9% Similarity=0.029 Sum_probs=217.5
Q ss_pred HHHHHHHhccC---hhHHHHHHHHHHHHhhccCchh-hhhhhHHHHH-HhccCCChHHHHHHHHHHHHHHHHh-CCcc--
Q 007918 203 IMSIFEDLTQD---DSVRLLAVEGCAALGKLLEPQD-CVAHILPVIV-NFSQDKSWRVRYMVANQLYELCEAV-GPEP-- 274 (585)
Q Consensus 203 l~~~l~~l~~d---~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~~l~-~~~~d~~~~vR~~~~~~l~~l~~~~-~~~~-- 274 (585)
+++.+...+++ ..++..++.++.......+... ....+++.+. .+.. ++.+|..+++++..+...- ++..
T Consensus 195 i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~~~~~~~~ 272 (1049)
T 3m1i_C 195 IFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDL 272 (1049)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCCCCTTCHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCCCCcchhh
Confidence 34444444433 5688889998888777665432 2344566555 2332 6889999999999887652 1110
Q ss_pred ccc---chHHHHHH------------------hccCChHHHHHHHHHHHHHHHHhhC------H--HHHHHhhHHHHHHh
Q 007918 275 TRM---DLVPAYVR------------------LLRDNEAEVRIAAAGKVTKFCRILN------P--ELAIQHILPCVKEL 325 (585)
Q Consensus 275 ~~~---~l~~~l~~------------------ll~d~~~~vr~~a~~~l~~l~~~~~------~--~~~~~~i~~~l~~~ 325 (585)
... .+++.++. ...|.+.++....++.+..++.... + ......+++.+...
T Consensus 273 ~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~ 352 (1049)
T 3m1i_C 273 IKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQL 352 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Confidence 011 11121222 1134566666667776665554321 0 12234566777777
Q ss_pred ccCCcHHHHHHHHHHHHhhchhh-----C---HHHHHHhHHHHHHHhhcCC-------------------C---hHHHHH
Q 007918 326 SSDSSQHVRSALASVIMGMAPLL-----G---KDATIEQLLPIFLSLLKDE-------------------F---PDVRLN 375 (585)
Q Consensus 326 ~~d~~~~vr~~a~~~l~~l~~~~-----~---~~~~~~~l~~~l~~~l~d~-------------------~---~~vr~~ 375 (585)
...++..+...++..+..++... . ...+...+++.+...+.-+ + ...|..
T Consensus 353 ~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~ 432 (1049)
T 3m1i_C 353 SKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKS 432 (1049)
T ss_dssp HTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHH
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHH
Confidence 67778889988888887776622 1 1234555666666544211 0 144667
Q ss_pred HHHHhHHhhhhhchhHHhhhHHHHHHHHhc--CCChHHHHHHHHHhHHHHHhhChh---hHHHHHHHHHHHHcc-----C
Q 007918 376 IISKLDQVNQVIGIDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQ-----D 445 (585)
Q Consensus 376 a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~--~~~~~~r~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~-----d 445 (585)
+...|..++...+. ...+.+.+.+...+. +.+|+.|.+++.+++.++..++.. .+...+++.+..+.. |
T Consensus 433 ~~~~L~~l~~~~~~-~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~ 511 (1049)
T 3m1i_C 433 EREVLVYLTHLNVI-DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKD 511 (1049)
T ss_dssp HHHHHHHHHHHCHH-HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHH
T ss_pred HHHHHHHHHccCHH-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhcccc
Confidence 77778777754443 344667777777664 478999999999999988766543 234556666665432 3
Q ss_pred CchHHHHHHHHHHHHHHHHhCHH-HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHH----------HHhcHH
Q 007918 446 KVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----------TCSRLL 514 (585)
Q Consensus 446 ~~~~vr~~a~~~l~~l~~~~~~~-~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~----------~~~~i~ 514 (585)
+.+.||..++.+++.++..+... .+...+++.++..+.+++..+|..|+.++..+++.++... +.+.++
T Consensus 512 ~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il 591 (1049)
T 3m1i_C 512 NKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTII 591 (1049)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHH
Confidence 55667767889999888765432 2456788888888999999999999999999999877542 356666
Q ss_pred HHHHhhcCCCCchHHHHHHHHHHHHHhhhc
Q 007918 515 PVVINASKDRVPNIKFNVAKVLQSLIPIVD 544 (585)
Q Consensus 515 ~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~ 544 (585)
..+...+.+....-+..+.++++.++...+
T Consensus 592 ~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 592 RDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 666666766666667788999999987766
No 49
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.65 E-value=1.4e-14 Score=128.24 Aligned_cols=186 Identities=19% Similarity=0.195 Sum_probs=112.5
Q ss_pred hhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhh
Q 007918 239 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 318 (585)
Q Consensus 239 ~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i 318 (585)
..++.+.+.+.|+++.+|..++..|+.+.. ...++.+.+++.|+++.||..++..|+.+.. +..
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~ 82 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERA 82 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGG
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHH
Confidence 345556666667777777777766665431 2456666666777777777777776666532 234
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHH
Q 007918 319 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 398 (585)
Q Consensus 319 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~ 398 (585)
++.+..+++|+++.||..++.+++.+.. +..+|.+..++.|+++.||..++.+|+.+.. +..+|
T Consensus 83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~ 146 (211)
T 3ltm_A 83 VEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVE 146 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHH
Confidence 4556666667777777777777666642 2344556666666667777777777666532 23556
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Q 007918 399 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 464 (585)
Q Consensus 399 ~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 464 (585)
.+..+++|+++.+|..++.+++.+. . +...+.+..++.|+++.||..|..+|+.+...
T Consensus 147 ~L~~~l~d~~~~vr~~a~~aL~~~~----~----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 147 PLIKALKDEDGWVRQSAADALGEIG----G----ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHC----S----HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhC----c----hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 6666666666667766666666552 1 23455566666666666777666666665443
No 50
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.64 E-value=8.3e-15 Score=129.75 Aligned_cols=183 Identities=16% Similarity=0.224 Sum_probs=109.4
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHH
Q 007918 357 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 436 (585)
Q Consensus 357 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~ 436 (585)
.++.+...++|+++.+|..++..|+.+.. +..+|.+...+.|+++.+|..++..++.+.. +...
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~ 83 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERAV 83 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHHH
Confidence 34555556666666666666666665442 2345556666666666666666666655421 1234
Q ss_pred HHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHH
Q 007918 437 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPV 516 (585)
Q Consensus 437 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~ 516 (585)
+.+...+.|+++.||..|+.+|+.+.. ...++.+..++.|+++.+|..++.+++.+.. +..++.
T Consensus 84 ~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~ 147 (211)
T 3ltm_A 84 EPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVEP 147 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHHH
Confidence 555556666666666666666665521 2355666666666666677777766666542 344566
Q ss_pred HHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007918 517 VINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 579 (585)
Q Consensus 517 l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~ 579 (585)
+..+++|+++.||..++.+|+.+.. +...+.|..++.|+++.||..|.++|..+.
T Consensus 148 L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 148 LIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 6666666677777777777766632 245556666666667777777777766554
No 51
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.63 E-value=3.3e-14 Score=124.83 Aligned_cols=183 Identities=20% Similarity=0.217 Sum_probs=95.0
Q ss_pred hhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhh
Q 007918 239 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 318 (585)
Q Consensus 239 ~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i 318 (585)
...+.+.+.++|+++.+|..++..|+.+.. ...++.+.++++|+++.+|..++..|+.+.. +..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~~~ 77 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERA 77 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGG
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHH
Confidence 344555555566666666666655554321 2345555555555556666666655555421 223
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHH
Q 007918 319 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 398 (585)
Q Consensus 319 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~ 398 (585)
++.+...+.|+++.+|..++.+++.+.. +...+.+...+.|+++.||..++.+|+.+.. +..+|
T Consensus 78 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~ 141 (201)
T 3ltj_A 78 VEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVE 141 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHH
Confidence 4455555555666666666665555432 1234445555555555566655555555432 23445
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHH
Q 007918 399 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 461 (585)
Q Consensus 399 ~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l 461 (585)
.+..++.|+++.+|..++.+++.+ |. +...+.+..++.|+++.||..|..+|+.+
T Consensus 142 ~L~~~l~d~~~~vr~~A~~aL~~~----~~----~~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 142 PLIKALKDEDGWVRQSAADALGEI----GG----ERVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHH----CS----HHHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHh----Cc----hhHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 555555555555555555555544 11 22344444455555555555555555543
No 52
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.61 E-value=4.8e-12 Score=127.97 Aligned_cols=479 Identities=9% Similarity=0.055 Sum_probs=300.4
Q ss_pred hchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhh----cCcCccchhhHHhhhHhhcCCCChH-----HHHHHHH
Q 007918 96 TVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLA----AGEWFTARVSACGLFHIAYPSAPDI-----LKTELRS 166 (585)
Q Consensus 96 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~----~~~~~~~r~~a~~~l~~~~~~~~~~-----~~~~l~~ 166 (585)
..+.+.||-.+.-.+.++.+..+ +.+.+.+..++..+. .+........+...+..+++-.+.- ..+.+.+
T Consensus 180 ~~~~~~~~~~~l~i~~~~~~~~~-~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~ 258 (778)
T 3opb_A 180 RISEDEVKSMMLIIFAELQSSFQ-KDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSK 258 (778)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHH
T ss_pred ccChhhhHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHH
Confidence 45677888888888877776665 556666777777555 2222333445566666777665541 1233344
Q ss_pred HHHhhc-CCCchHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHhccChhHHHHHHHHHHHHhhccCc-hhhhhhhHHH
Q 007918 167 IYTQLC-QDDMPMVRRSAASNLGKFAATVE-PAHLKTDIMSIFEDLTQDDSVRLLAVEGCAALGKLLEP-QDCVAHILPV 243 (585)
Q Consensus 167 ~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~l~~d~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~~ 243 (585)
.+.... ..++..+..++...+...+..-. .+.+.+...+.+.++++++.+|..|+-.|.++...-+. ......+.+.
T Consensus 259 ~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~~~ir~lAavvL~KL~~~~~~~~~si~~La~~ 338 (778)
T 3opb_A 259 LFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQLSEI 338 (778)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTSGGGHHHHHHHHHHHTGGGTCTTCCHHHHHHH
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHH
Confidence 554443 34556666777776666553211 13345566678888887788999999999988765432 2334557788
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHHHhC--Cccc-ccchHHHHHHhccC-ChHHHHHHHHHHHHHHHHhhCHHHHHHhhH
Q 007918 244 IVNFSQDKSWRVRYMVANQLYELCEAVG--PEPT-RMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPELAIQHIL 319 (585)
Q Consensus 244 l~~~~~d~~~~vR~~~~~~l~~l~~~~~--~~~~-~~~l~~~l~~ll~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~ 319 (585)
+.+.+.+++...|..+++.|..+...-. .... ...+++.+++++++ .+..+-..++..+..+............=+
T Consensus 339 ~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l 418 (778)
T 3opb_A 339 FINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXX 418 (778)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC--
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 8888777666668999999988753100 0011 12467788888885 556788888888888876543210000011
Q ss_pred HHHHHhccCCcHH--------HHH-HHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchh
Q 007918 320 PCVKELSSDSSQH--------VRS-ALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 390 (585)
Q Consensus 320 ~~l~~~~~d~~~~--------vr~-~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 390 (585)
..+..+.+...+. ... .....-... .....++|.+..++...++.+|..++++|..++..-...
T Consensus 419 ~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~-------l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R 491 (778)
T 3opb_A 419 XXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKY-------ILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFI 491 (778)
T ss_dssp ----------------CCTHHHHHHHHHHHHHHH-------TTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGH
T ss_pred hhhhhhccccCcccCcccccccchHHHHHHHHHH-------HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 1222222211110 000 000000000 012347788889999999999999999999998653321
Q ss_pred --HHhhhHHHHHHHHhcCCChH---HHHHHHHHhHHHHHhhChhhHH-----HHHHHHHHHHccC-Cch-----------
Q 007918 391 --LLSQSLLPAIVELAEDRHWR---VRLAIIEYIPLLASQLGVGFFD-----DKLGALCMQWLQD-KVY----------- 448 (585)
Q Consensus 391 --~~~~~ll~~l~~~~~~~~~~---~r~~~~~~l~~l~~~~~~~~~~-----~~l~~~l~~~l~d-~~~----------- 448 (585)
...+..+|.+..++.+.... .|..|+.++..+.-...+.... ...+|.+..++.. +..
T Consensus 492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~ 571 (778)
T 3opb_A 492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI 571 (778)
T ss_dssp HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence 23456788888888765433 8999999999887544322210 1467888888872 221
Q ss_pred --HHHHHHHHHHHHHHHHhCH---H----HHH-hhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcCh--HHHHh----c
Q 007918 449 --SIRDAAANNLKRLAEEFGP---E----WAM-QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--EITCS----R 512 (585)
Q Consensus 449 --~vr~~a~~~l~~l~~~~~~---~----~~~-~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~--~~~~~----~ 512 (585)
--+..|+.+|++++..-+. + ... ...+|.+.+++.+.+..+|.+|++++.+++..-.. ..+.+ .
T Consensus 572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~ 651 (778)
T 3opb_A 572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ 651 (778)
T ss_dssp CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence 1267899999999885422 1 223 25889999999999999999999999999864321 11211 1
Q ss_pred ---HHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch--HHHH--hhHHHHHHHhcCC--CCccHHHHHHHHHHHHHHhh
Q 007918 513 ---LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--SMVE--KTIRPCLVELTED--PDVDVRFFATQAIQSIDHVM 582 (585)
Q Consensus 513 ---i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~--~~~~--~~~~~~l~~l~~D--~~~~Vr~~a~~al~~l~~~l 582 (585)
=++.++.+++..+..+|.+++.+++.+....+. ..+. ...++.+..++.| .+.++|..+..++..+..+.
T Consensus 652 ~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 652 SLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred hhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence 277899999999999999999999998644332 1111 2466677777777 79999999999999888643
No 53
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.60 E-value=5e-11 Score=123.18 Aligned_cols=299 Identities=14% Similarity=0.069 Sum_probs=185.8
Q ss_pred CCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCCh--------HHHHHHHHHHHHHHHHhhCHHHHHHhhHHH
Q 007918 250 DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE--------AEVRIAAAGKVTKFCRILNPELAIQHILPC 321 (585)
Q Consensus 250 d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~--------~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~ 321 (585)
++++.+|..++..+|.+....+. ..+..+...+.+++ +.+|..|+-+|+-+.-..+.+ .+++.
T Consensus 406 s~~~~ik~GAllaLGli~ag~~~-----~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e----ev~e~ 476 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGFGR-----DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI----EVYEA 476 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTTH-----HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH----HHHHH
T ss_pred CCcHHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH----HHHHH
Confidence 44566777777777765544332 23444444443332 567777777777654333332 33445
Q ss_pred HHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHH
Q 007918 322 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 401 (585)
Q Consensus 322 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~ 401 (585)
+...+.|.+..+|..++.+++.+.-..|.....+.++..+. .+.+..+|..++.+|+.+. +|.+. ..+.+.
T Consensus 477 L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~---e~~~e~vrR~aalgLGll~--~g~~e----~~~~li 547 (963)
T 4ady_A 477 LKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ---ETQHGNITRGLAVGLALIN--YGRQE----LADDLI 547 (963)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHT--TTCGG----GGHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh---ccCcHHHHHHHHHHHHhhh--CCChH----HHHHHH
Confidence 55555556666677777777765433343444444444332 4556778888888887663 33322 223333
Q ss_pred -HHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHh
Q 007918 402 -ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 480 (585)
Q Consensus 402 -~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~ 480 (585)
.+..+.+|.+|..++.+++.-....|.. ..+..++..+..|.+..||.+|+.+|+.+.. |. +...+.++.
T Consensus 548 ~~L~~~~dp~vRygaa~alglAyaGTGn~---~aIq~LL~~~~~d~~d~VRraAViaLGlI~~--g~----~e~v~rlv~ 618 (963)
T 4ady_A 548 TKMLASDESLLRYGGAFTIALAYAGTGNN---SAVKRLLHVAVSDSNDDVRRAAVIALGFVLL--RD----YTTVPRIVQ 618 (963)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHTTTSCCH---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTS--SS----CSSHHHHTT
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHhccCCcHHHHHHHHHHHHhhcc--CC----HHHHHHHHH
Confidence 3445788889998888776544333442 2233455555678888999999999987642 22 234666666
Q ss_pred h-hcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH--HHHhhHHHHHH
Q 007918 481 M-INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLV 557 (585)
Q Consensus 481 ~-l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~--~~~~~~~~~l~ 557 (585)
. ..+.++.+|.++..++|.+...-+. ..++..|..+.+|++..||++|+.+++.+.....+. .....++..|.
T Consensus 619 ~L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~ 694 (963)
T 4ady_A 619 LLSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFL 694 (963)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHH
Confidence 4 4567899999999999988765554 566678888889999999999999999987543222 12344455555
Q ss_pred HhcCC--CCccHHHHHHHHHHHHH
Q 007918 558 ELTED--PDVDVRFFATQAIQSID 579 (585)
Q Consensus 558 ~l~~D--~~~~Vr~~a~~al~~l~ 579 (585)
....| .|+..|..+.-|.+-+.
T Consensus 695 ~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 695 SVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp HHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred HHHhcccccHHHHHHHHHHHHHHh
Confidence 54443 57778888888887663
No 54
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.59 E-value=1.9e-11 Score=134.74 Aligned_cols=488 Identities=9% Similarity=0.057 Sum_probs=298.4
Q ss_pred ccHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhcccccccccCCchHHHHHHHHHHhccccc----cCCcchH
Q 007918 9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGVEHA 84 (585)
Q Consensus 9 ~~i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~l~~~----~~~~~~~ 84 (585)
..+..++..+.+++...|..|-..|.++...- ..+..+...+.. +.++++|..++..|.+.+.. ++ ++..
T Consensus 16 ~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p---~~~~~l~~iL~~--s~~~~vr~~aa~~Lk~~i~~~W~~l~-~~~~ 89 (1049)
T 3m1i_C 16 ALLDQVVSTFYQGSGVQQKQAQEILTKFQDNP---DAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLP-NDHR 89 (1049)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHST---TGGGGHHHHHHH--CSCHHHHHHHHHHHHHHHHHTGGGSC-HHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHhCc---hHHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHhhCccCC-HHHH
Confidence 34667777777888889999998888764432 223333333322 45789999999888766532 22 2222
Q ss_pred ----HhchHHHhhhhhch-----hhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhc--
Q 007918 85 ----HVLLPPLETLCTVE-----ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAY-- 153 (585)
Q Consensus 85 ----~~l~~~l~~l~~~~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~-- 153 (585)
..++..+.....++ ++.+|.....++..++..--+ .-++.+++.+....+ .+...+..+..++..+.
T Consensus 90 ~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~ee 167 (1049)
T 3m1i_C 90 IGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEE 167 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHH
Confidence 23333333322222 478999999999999887544 345667777766665 33333444444443332
Q ss_pred --CC----CChH-----------HHHHHHHHHHhhcCC-CchHHHHHHHHhHHHHHhhhcccc-hHHHHHHHHH-HhccC
Q 007918 154 --PS----APDI-----------LKTELRSIYTQLCQD-DMPMVRRSAASNLGKFAATVEPAH-LKTDIMSIFE-DLTQD 213 (585)
Q Consensus 154 --~~----~~~~-----------~~~~l~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~-~l~~d 213 (585)
.. .+.. ....+++.+.+++++ +++.++..+.+++..+....+... ..+.+++.+. .+..+
T Consensus 168 v~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~~ 247 (1049)
T 3m1i_C 168 VFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTS 247 (1049)
T ss_dssp HHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHS
T ss_pred HHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCCC
Confidence 11 1111 123344555555443 457899999999988776554221 2233455444 34456
Q ss_pred hhHHHHHHHHHHHHhhcc-Cch--hhhhh-------hHHHHHH--------------hccCCChHHHHHHHHHHHHHHHH
Q 007918 214 DSVRLLAVEGCAALGKLL-EPQ--DCVAH-------ILPVIVN--------------FSQDKSWRVRYMVANQLYELCEA 269 (585)
Q Consensus 214 ~~vr~~a~~~l~~l~~~~-~~~--~~~~~-------~~~~l~~--------------~~~d~~~~vR~~~~~~l~~l~~~ 269 (585)
+.+|..+++++..++..- ++. .+... ++..+.. ..++.++......++.+..++..
T Consensus 248 ~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~ 327 (1049)
T 3m1i_C 248 PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLAR 327 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHH
Confidence 889999999999988762 221 01111 1222211 12344566666667766665543
Q ss_pred hC----Cc-cc---ccchHHHHHHhccCChHHHHHHHHHHHHHHHHhh-----CHH---HHHHhhHHHHHHhcc---C--
Q 007918 270 VG----PE-PT---RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL-----NPE---LAIQHILPCVKELSS---D-- 328 (585)
Q Consensus 270 ~~----~~-~~---~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~-----~~~---~~~~~i~~~l~~~~~---d-- 328 (585)
.. .. .. ...+++.+......++.+++..+++.+..+++.+ ... .+...+++.+...+. |
T Consensus 328 ~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~ 407 (1049)
T 3m1i_C 328 NRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVL 407 (1049)
T ss_dssp HHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCC
T ss_pred HHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCccee
Confidence 21 11 01 1235666666666778899999999999988732 111 223444444443221 0
Q ss_pred -----------------CcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcC--CChHHHHHHHHHhHHhhhhhch
Q 007918 329 -----------------SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQVIGI 389 (585)
Q Consensus 329 -----------------~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~ 389 (585)
..|..|..+...+..++... .....+.+.+.+.+.+.+ .++..|.+++.+++.+++..+.
T Consensus 408 ~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~-~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~ 486 (1049)
T 3m1i_C 408 VVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLN-VIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSE 486 (1049)
T ss_dssp EEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCH
T ss_pred eeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCc
Confidence 01245667777777776443 445667777888777753 5788999999999999876654
Q ss_pred h---HHhhhHHHHHHHHhc-----CCChHHHHHHHHHhHHHHHhhCh-hhHHHHHHHHHHHHccCCchHHHHHHHHHHHH
Q 007918 390 D---LLSQSLLPAIVELAE-----DRHWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQWLQDKVYSIRDAAANNLKR 460 (585)
Q Consensus 390 ~---~~~~~ll~~l~~~~~-----~~~~~~r~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~ 460 (585)
. .+...+++.+..+.. ++.+.+|..++..++.+.+.+.. ..+...+++.+...+.|++..|+..|+.++..
T Consensus 487 ~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~ 566 (1049)
T 3m1i_C 487 DTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIK 566 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3 223455565555432 34566776788899887765432 23445677888888999999999999999999
Q ss_pred HHHHhCHHHH----------HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcC
Q 007918 461 LAEEFGPEWA----------MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 505 (585)
Q Consensus 461 l~~~~~~~~~----------~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~ 505 (585)
+++..+.... .+.++..+...+.+.....+....++++.++...+
T Consensus 567 l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 567 IVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 9998775532 34455555555666556667788899999987776
No 55
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.58 E-value=3.5e-12 Score=127.13 Aligned_cols=345 Identities=14% Similarity=0.147 Sum_probs=242.0
Q ss_pred hhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCH
Q 007918 235 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 311 (585)
Q Consensus 235 ~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~ 311 (585)
.+...-+|.+.+++.+.++.++..++..|..++..-.. .......+|.+++++.+++..++..|+.+|..++..-+.
T Consensus 44 ~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~ 123 (584)
T 3l6x_A 44 NWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ 123 (584)
T ss_dssp CCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCH
T ss_pred CcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCH
Confidence 44556788888888888999999999999888742111 122335789999999999999999999999999853122
Q ss_pred H----HHHHhhHHHHHHhccC-CcHHHHHHHHHHHHhhchhhCH-HHHHHhHHHHHHHhh------------------cC
Q 007918 312 E----LAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLGK-DATIEQLLPIFLSLL------------------KD 367 (585)
Q Consensus 312 ~----~~~~~i~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l------------------~d 367 (585)
+ ......+|.+..++.+ .+..++..++.+|.+++..-.. ......-+|.+..++ ..
T Consensus 124 ~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccccccccccccccccc
Confidence 2 2223567888888875 6788999999999998764321 222333456666654 12
Q ss_pred CChHHHHHHHHHhHHhhhhhc--hhHHh--hhHHHHHHHHhc------CCChHHHHHHHHHhHHHHHhhC----------
Q 007918 368 EFPDVRLNIISKLDQVNQVIG--IDLLS--QSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQLG---------- 427 (585)
Q Consensus 368 ~~~~vr~~a~~~l~~l~~~~~--~~~~~--~~ll~~l~~~~~------~~~~~~r~~~~~~l~~l~~~~~---------- 427 (585)
.++.|+.+|+.+|..++..-. ...+. ..+++.|..++. +.+......++.+|..++-...
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 257999999999999986432 12111 234555555543 3455677777777766553321
Q ss_pred -----------------hh-hHHHHHHHHHHHHcc-CCchHHHHHHHHHHHHHHHHhCH---H---HH-HhhhHHHHHhh
Q 007918 428 -----------------VG-FFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGP---E---WA-MQHITPQVLEM 481 (585)
Q Consensus 428 -----------------~~-~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~---~---~~-~~~ll~~l~~~ 481 (585)
.+ .+....++.++.++. ..+..++++|+.+|..++..-+. . .+ ....+|.+.++
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 11 122345677778874 46799999999999999753211 1 11 24679999999
Q ss_pred hcCcchHHHHHHHHHHHHhhhhcCh-HHHHhcHHHHHHhhcCCC--------CchHHHHHHHHHHHHHhhhchH---HHH
Q 007918 482 INNPHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINASKDR--------VPNIKFNVAKVLQSLIPIVDQS---MVE 549 (585)
Q Consensus 482 l~~~~~~~R~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~~l~d~--------~~~vR~~~~~~l~~l~~~~~~~---~~~ 549 (585)
+.+++..++..++.++.+++..... ..+....+|.|..++.+. ...++..++.+++++...-... ...
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~ 443 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRE 443 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999999999999875443 334677899999999876 3578889999999887442222 344
Q ss_pred hhHHHHHHHhcCCC--CccHHHHHHHHHHHHH
Q 007918 550 KTIRPCLVELTEDP--DVDVRFFATQAIQSID 579 (585)
Q Consensus 550 ~~~~~~l~~l~~D~--~~~Vr~~a~~al~~l~ 579 (585)
...+|.|..++.+. .+.++..|+.++..+.
T Consensus 444 ~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 444 TQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 56889999988765 7889999999998775
No 56
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.58 E-value=7.3e-11 Score=127.12 Aligned_cols=521 Identities=12% Similarity=0.088 Sum_probs=314.5
Q ss_pred hHHHHHHHhhhHHHHHHhhChh----h---hhhhccccccccc--CCchHHHHHHHHHHhccccccCCcchHHhchHHHh
Q 007918 22 DIQLRLNSIRRLSTIARALGEE----R---TRKELIPFLSENN--DDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLE 92 (585)
Q Consensus 22 ~~~~R~~a~~~l~~~~~~~~~~----~---~~~~l~~~l~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~ 92 (585)
+...|..|+..+....+.++++ . .++.++.++.... +...-+|..++..+..++.... |+.++.+++-+.
T Consensus 56 ~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~-p~~Wp~~i~~l~ 134 (980)
T 3ibv_A 56 KPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLY-PSNWNDFFASLQ 134 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHT-TTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhC-cccCchHHHHHH
Confidence 6889999988888766655444 2 4556666666532 3456899999999888766433 345566666666
Q ss_pred hhhhchhh-HHHHHHHHHHHHHHhhcCh-----------------hhH--------HhhHHHHHHHhhcCcCccchhhHH
Q 007918 93 TLCTVEET-CVRDKAVESLCRIGSQMRE-----------------SDL--------VDWYIPLVKRLAAGEWFTARVSAC 146 (585)
Q Consensus 93 ~l~~~~~~-~vr~~a~~~l~~l~~~~~~-----------------~~~--------~~~l~~~l~~l~~~~~~~~r~~a~ 146 (585)
.+.+..+. ..-....+.|..+.+.+.. +.+ .+.+..++.......++..+..+.
T Consensus 135 ~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L 214 (980)
T 3ibv_A 135 GVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCL 214 (980)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 55554333 2334455555544454321 000 112233333333334556677777
Q ss_pred hhhHhhcCCCChH--HHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHH------HHHHHhc---cChh
Q 007918 147 GLFHIAYPSAPDI--LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIM------SIFEDLT---QDDS 215 (585)
Q Consensus 147 ~~l~~~~~~~~~~--~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~------~~l~~l~---~d~~ 215 (585)
.++....+-.+.. ....+++.+.+++.+ +.+|..|+++|..++..-.+......++ +.+..+. .|.+
T Consensus 215 ~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d 292 (980)
T 3ibv_A 215 QVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPN 292 (980)
T ss_dssp HHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHH
T ss_pred HHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHH
Confidence 8887777765554 236788888888877 7899999999999887643322211222 2222222 2223
Q ss_pred HHHHHHHHHHHHh------hccCc----------hhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcc----c
Q 007918 216 VRLLAVEGCAALG------KLLEP----------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----T 275 (585)
Q Consensus 216 vr~~a~~~l~~l~------~~~~~----------~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~----~ 275 (585)
++...++.+..++ ...+. ......+++.+..+..+++..|-..+...+..+........ .
T Consensus 293 ~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~ 372 (980)
T 3ibv_A 293 FDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKEL 372 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccc
Confidence 3332333322222 11220 03345688888899999989988888888877775532110 1
Q ss_pred cc-------chHHHHHHhcc---C---------Ch----HHHHHHHHHHHHHHHHhhCHHHHHH----hhHHHHHHhc--
Q 007918 276 RM-------DLVPAYVRLLR---D---------NE----AEVRIAAAGKVTKFCRILNPELAIQ----HILPCVKELS-- 326 (585)
Q Consensus 276 ~~-------~l~~~l~~ll~---d---------~~----~~vr~~a~~~l~~l~~~~~~~~~~~----~i~~~l~~~~-- 326 (585)
.. .+++.+...+. | ++ .+.|+... .+-..+..++++.+.+ .+.+.+.+.+
T Consensus 373 ~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~ 451 (980)
T 3ibv_A 373 SASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATL 451 (980)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcc
Confidence 11 23333333321 1 11 24666666 6667777778876666 5555565554
Q ss_pred -cCCcHHHHHHHHHHHHhhchhhCHH--------HHHHhHHHHHHHhhc-----CCChHHHHHHHHHhHHhhhhhchh-H
Q 007918 327 -SDSSQHVRSALASVIMGMAPLLGKD--------ATIEQLLPIFLSLLK-----DEFPDVRLNIISKLDQVNQVIGID-L 391 (585)
Q Consensus 327 -~d~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~-~ 391 (585)
.+.+|+.+++++.+++.+++.+... ...+.+++.+..+++ ++++.||..+++.+++.++.+..+ .
T Consensus 452 ~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~ 531 (980)
T 3ibv_A 452 SPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESA 531 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCT
T ss_pred cCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCch
Confidence 3567999999999999998876421 123456677777765 788999999999999999988643 2
Q ss_pred HhhhHHHHHHH--HhcCCChHHHHHHHHHhHHHHHhhChhh--HHHHHHHHHHHHccC---C------------------
Q 007918 392 LSQSLLPAIVE--LAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQD---K------------------ 446 (585)
Q Consensus 392 ~~~~ll~~l~~--~~~~~~~~~r~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d---~------------------ 446 (585)
+.+.+++.+.. .+.+++.++|..++.++..+.+.++... +.+.++..+..++.- +
T Consensus 532 ~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~ 611 (980)
T 3ibv_A 532 AIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNS 611 (980)
T ss_dssp THHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTT
T ss_pred hHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccC
Confidence 22344444444 4557889999999999999998876432 223344444444431 0
Q ss_pred chHHHHHHHHHHHHHHHHhC--HH---HHHhhhHHHHHh----hhcCc----chH-HHHHHHHHHHHhhhhcCh------
Q 007918 447 VYSIRDAAANNLKRLAEEFG--PE---WAMQHITPQVLE----MINNP----HYL-YRMTILRAISLLAPVMGS------ 506 (585)
Q Consensus 447 ~~~vr~~a~~~l~~l~~~~~--~~---~~~~~ll~~l~~----~l~~~----~~~-~R~~a~~~l~~l~~~~~~------ 506 (585)
..+-+....+++|.++...+ .+ .+.+.+++.+.. .+... +.. .-...+.+++.+++.+..
T Consensus 612 ~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~ 691 (980)
T 3ibv_A 612 DFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEV 691 (980)
T ss_dssp THHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCC
T ss_pred CchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCC
Confidence 12346668889999987765 22 123444444332 23221 111 122567777888876532
Q ss_pred --HHHHhcHHHHHHhhcC--CCCchHHHHHHHHHHHHHhhhchH
Q 007918 507 --EITCSRLLPVVINASK--DRVPNIKFNVAKVLQSLIPIVDQS 546 (585)
Q Consensus 507 --~~~~~~i~~~l~~~l~--d~~~~vR~~~~~~l~~l~~~~~~~ 546 (585)
......+++.++..+. ..+..||.++..++..++..++..
T Consensus 692 p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~ 735 (980)
T 3ibv_A 692 AWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPD 735 (980)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHh
Confidence 2234566666655555 357899999999999999988765
No 57
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.57 E-value=3.5e-11 Score=121.76 Aligned_cols=539 Identities=10% Similarity=0.037 Sum_probs=315.5
Q ss_pred HHHHHHHhc-ChhHHHHHHHhhhHHHHHHhhChhhhhhhccccccc---ccCCchHHHHHHHHHHhccccccCCcchHHh
Q 007918 11 IAVLIDELK-NDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE---NNDDDDEVLLAMAEELGVFIPYVGGVEHAHV 86 (585)
Q Consensus 11 i~~l~~~l~-~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~---~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~ 86 (585)
++++-..+. ..|. ....-++.+-++..+++ ..+.+ +.|+.. ...+.++||..+.-...++..... .++...
T Consensus 134 l~~~~~~~~~~~~~-~~~~~l~~~~~l~~~~~--~~~~~-~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~-~~~~~~ 208 (778)
T 3opb_A 134 LNELQIRIHYGEDT-HVTYLLSIILQLLNKFK--YNFKE-VRFLVKELILRISEDEVKSMMLIIFAELQSSFQ-KDFDKA 208 (778)
T ss_dssp HHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSC--CCSTT-TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHhhcCCCc-chhHHHHHHHHHHHHcC--ccccc-hhhHHHHhccccChhhhHHHHHHHHHHHHHhCc-hHHHHH
Confidence 444433333 3333 22333455555555554 22334 555554 234567888766655555433222 355666
Q ss_pred chHHHhhhhhchhh----HHHHHHHHHHHHHHhhcCh---hhH-HhhHHHHHHHhhcC-cCccchhhHHhhhHhhcCCCC
Q 007918 87 LLPPLETLCTVEET----CVRDKAVESLCRIGSQMRE---SDL-VDWYIPLVKRLAAG-EWFTARVSACGLFHIAYPSAP 157 (585)
Q Consensus 87 l~~~l~~l~~~~~~----~vr~~a~~~l~~l~~~~~~---~~~-~~~l~~~l~~l~~~-~~~~~r~~a~~~l~~~~~~~~ 157 (585)
+..++..++-+.+. .-...+..++..+....+. +-+ .+.+.|.+.+.... +......++..++...+..-.
T Consensus 209 ~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~ 288 (778)
T 3opb_A 209 VVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDET 288 (778)
T ss_dssp HHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcH
Confidence 77777766622221 1223455566655544433 111 12345555544433 334445566666666554332
Q ss_pred h--HHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcc-cchHHHHHHHHHHhccC--hhHHHHHHHHHHHHhhccC
Q 007918 158 D--ILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-AHLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLE 232 (585)
Q Consensus 158 ~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~ 232 (585)
- -..+...+.+.+++++ ..+|..++-.|.++...-+. ..-...+.+.+.+++.+ ...|..|++.|..+.-.-.
T Consensus 289 cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~ 366 (778)
T 3opb_A 289 MRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKAS 366 (778)
T ss_dssp HHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSH
T ss_pred HHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHH
Confidence 2 2345667777777765 57899999999888765432 23345677777776655 3358999999998865322
Q ss_pred c-hhh--hhhhHHHHHHhccC-CChHHHHHHHHHHHHHHHHhCCccc----ccchHHHHHHhccC--ChHHHHHHHHHHH
Q 007918 233 P-QDC--VAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPT----RMDLVPAYVRLLRD--NEAEVRIAAAGKV 302 (585)
Q Consensus 233 ~-~~~--~~~~~~~l~~~~~d-~~~~vR~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~ll~d--~~~~vr~~a~~~l 302 (585)
- +.. .+.++..+.+++++ .+..+-..++..|.+++...+.... ..++.++...-..+ ++....... ...
T Consensus 367 VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~-~~v 445 (778)
T 3opb_A 367 VKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAK-EDI 445 (778)
T ss_dssp HHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHH-HHH
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccch-HHH
Confidence 1 111 12346666666664 5556777888888887765443211 11222221110000 000000000 011
Q ss_pred HH-HHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHH--HHHHhHHHHHHHhhcCCChH---HHHHH
Q 007918 303 TK-FCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPD---VRLNI 376 (585)
Q Consensus 303 ~~-l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~---vr~~a 376 (585)
.. -.+. .....++|.+..++++.++.+|..+++++.+++..-... ...+-.++.+..++.+.... +|..|
T Consensus 446 ~~~~~~~----l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~A 521 (778)
T 3opb_A 446 LLFNEKY----ILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILG 521 (778)
T ss_dssp HHHHHHH----TTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHH
T ss_pred HHHHHHH----HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHH
Confidence 11 1111 111346888999999999999999999999997653221 23445677888888776544 89999
Q ss_pred HHHhHHhhhhhchhHHh-----hhHHHHHHHHhcC-CCh-------------HHHHHHHHHhHHHHHhhCh-------hh
Q 007918 377 ISKLDQVNQVIGIDLLS-----QSLLPAIVELAED-RHW-------------RVRLAIIEYIPLLASQLGV-------GF 430 (585)
Q Consensus 377 ~~~l~~l~~~~~~~~~~-----~~ll~~l~~~~~~-~~~-------------~~r~~~~~~l~~l~~~~~~-------~~ 430 (585)
+.+|.++.....+.... -..+|.|..++.. +.. ..+..++.++..++..-++ ..
T Consensus 522 A~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~I 601 (778)
T 3opb_A 522 CRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHI 601 (778)
T ss_dssp HHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHH
Confidence 99999998544322211 1567888888772 221 2377888888888765321 12
Q ss_pred HH-HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCH---HHHHh------hhHHHHHhhhcCcchHHHHHHHHHHHHh
Q 007918 431 FD-DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQ------HITPQVLEMINNPHYLYRMTILRAISLL 500 (585)
Q Consensus 431 ~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~------~ll~~l~~~l~~~~~~~R~~a~~~l~~l 500 (585)
+. ...+|.+..++.+.+..||.+|+.+++.++..-.. +++.. .=++.++.++...+..+|.+|..++.++
T Consensus 602 i~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnL 681 (778)
T 3opb_A 602 VSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANI 681 (778)
T ss_dssp HHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 33 25788999999999999999999999999863321 22211 1266788899999999999999999999
Q ss_pred hhhcCh--HHH--HhcHHHHHHhhcCC--CCchHHHHHHHHHHHHHhhhch----H----HH-HhhHHHHHHHhcC
Q 007918 501 APVMGS--EIT--CSRLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQ----S----MV-EKTIRPCLVELTE 561 (585)
Q Consensus 501 ~~~~~~--~~~--~~~i~~~l~~~l~d--~~~~vR~~~~~~l~~l~~~~~~----~----~~-~~~~~~~l~~l~~ 561 (585)
....+. ... .+..++.++..+.+ +++.+|..++.++..++...+. . .. .+.+...|.+.+.
T Consensus 682 ts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk 757 (778)
T 3opb_A 682 ATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLK 757 (778)
T ss_dssp HHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHS
T ss_pred cCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHh
Confidence 643332 112 23567788888888 8999999999999999973211 1 11 2456666666543
No 58
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.57 E-value=8.1e-13 Score=120.70 Aligned_cols=224 Identities=13% Similarity=0.103 Sum_probs=153.3
Q ss_pred HHHHHHhhcCCChHHHHHHHHHhHHhhhhhch---hHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhh---ChhhH
Q 007918 358 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GVGFF 431 (585)
Q Consensus 358 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~---~~~~~ 431 (585)
+|.+..++++.++++|..|+.+|..++..-+. .......+|.+..++++++..+|..++.++..++..- .....
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34455555555566666666666665543221 1112245666666666666667777666666665321 01112
Q ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcCh--
Q 007918 432 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-- 506 (585)
Q Consensus 432 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~-- 506 (585)
....+|.+..++.+++..+|..|+.+|+.++..... .......+|.+.+++.+++..+|..++.++++++...+.
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 163 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 163 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 224577888888888889999999999888742111 123356788889999999999999999999999864322
Q ss_pred -HHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch---HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 007918 507 -EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 581 (585)
Q Consensus 507 -~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~~ 581 (585)
.......+|.+..++.++++.+|..++.+++.+....+. ......+++.|..++.++++++|..|.+++..+...
T Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 123466889999999999999999999999999763222 123355789999988999999999999999988764
No 59
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.56 E-value=1.2e-12 Score=129.78 Aligned_cols=338 Identities=13% Similarity=0.135 Sum_probs=219.8
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHH----H
Q 007918 241 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----L 313 (585)
Q Consensus 241 ~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~----~ 313 (585)
+|.+.+++.++++.++..++..|..++..-.. .......+|.+++++.++++.++..|+.+|..++.. .++ .
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-~~~~k~~i 82 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR-STTNKLET 82 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 45566666777777888888888777632111 111235678888888887888888888888888753 122 1
Q ss_pred HHHhhHHHHHHhcc-CCcHHHHHHHHHHHHhhchhhC-HHHHHHhHHHHHHHhh--------cC--------CChHHHHH
Q 007918 314 AIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLG-KDATIEQLLPIFLSLL--------KD--------EFPDVRLN 375 (585)
Q Consensus 314 ~~~~i~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~l--------~d--------~~~~vr~~ 375 (585)
.....+|.+.+++. +.++.++..++.+|.+++..-. .....+..+|.+..++ .+ .++.+...
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~ 162 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence 12345777888877 7778888888888888876522 1222336677777777 22 23456668
Q ss_pred HHHHhHHhhhhhc-hhHHhh--hHHHHHHHHhcC------CChHHHHHHHHHhHHHHHh---------------------
Q 007918 376 IISKLDQVNQVIG-IDLLSQ--SLLPAIVELAED------RHWRVRLAIIEYIPLLASQ--------------------- 425 (585)
Q Consensus 376 a~~~l~~l~~~~~-~~~~~~--~ll~~l~~~~~~------~~~~~r~~~~~~l~~l~~~--------------------- 425 (585)
|+.+|..++..-. .+.+.+ ..+|.|..++.+ .+.++...++..+..+.-.
T Consensus 163 a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~ 242 (457)
T 1xm9_A 163 ATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242 (457)
T ss_dssp HHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----
T ss_pred HHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccc
Confidence 8888888876511 111221 466777666653 3333444444444333200
Q ss_pred -------h------------------------C-hhhHHHHHHHHHHHHccC-CchHHHHHHHHHHHHHHHHhCH---H-
Q 007918 426 -------L------------------------G-VGFFDDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGP---E- 468 (585)
Q Consensus 426 -------~------------------------~-~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~---~- 468 (585)
+ | ...+....++.+..++.+ ++..++++|+.+|..++...+. .
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~ 322 (457)
T 1xm9_A 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGM 322 (457)
T ss_dssp -----------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHH
T ss_pred cccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHH
Confidence 0 0 011234456666676653 4689999999999999753221 1
Q ss_pred ---HH-HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcCh-HHHHhcHHHHHHhhcCCCCc------hHHHHHHHHHH
Q 007918 469 ---WA-MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINASKDRVP------NIKFNVAKVLQ 537 (585)
Q Consensus 469 ---~~-~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~~l~d~~~------~vR~~~~~~l~ 537 (585)
.+ ....+|.+.+++.+++..+|..|+.++.+++..-.. ..+....+|.|++++...++ ++...++.+++
T Consensus 323 ~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ 402 (457)
T 1xm9_A 323 SQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVR 402 (457)
T ss_dssp HHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHH
Confidence 12 256889999999999999999999999999864322 22356788999999987644 57778999999
Q ss_pred HHHhhhchH---HHHhhHHHHHHHhcCCC-CccHHHHHHHHHHHHH
Q 007918 538 SLIPIVDQS---MVEKTIRPCLVELTEDP-DVDVRFFATQAIQSID 579 (585)
Q Consensus 538 ~l~~~~~~~---~~~~~~~~~l~~l~~D~-~~~Vr~~a~~al~~l~ 579 (585)
.+...-+.. ......++.|..++... +.+++..|.+.+..+.
T Consensus 403 ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 403 NLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 887543322 22245788888888777 8899999999987654
No 60
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.55 E-value=8.9e-11 Score=126.53 Aligned_cols=342 Identities=9% Similarity=0.025 Sum_probs=210.1
Q ss_pred HHHHHHHHhccC---hhHHHHHHHHHHHHhhccCchh-hhhhhHHHHH-HhccCCChHHHHHHHHHHHHHHHH-h-CCc-
Q 007918 202 DIMSIFEDLTQD---DSVRLLAVEGCAALGKLLEPQD-CVAHILPVIV-NFSQDKSWRVRYMVANQLYELCEA-V-GPE- 273 (585)
Q Consensus 202 ~l~~~l~~l~~d---~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~~l~-~~~~d~~~~vR~~~~~~l~~l~~~-~-~~~- 273 (585)
.+.+++...+++ +++...+++++.......+-.. ....+++.+. .++. ++..|..|+++|..+... . ++.
T Consensus 194 ~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~ 271 (1023)
T 4hat_C 194 QIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDND 271 (1023)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchH
Confidence 344444444332 5577788888888887766432 2345667666 6664 466899999999888752 1 121
Q ss_pred ccccc---hHHHHHH------------------hccCChHHHHHHHHHHHHHHHHhhCH------H--HHHHhhHHHHHH
Q 007918 274 PTRMD---LVPAYVR------------------LLRDNEAEVRIAAAGKVTKFCRILNP------E--LAIQHILPCVKE 324 (585)
Q Consensus 274 ~~~~~---l~~~l~~------------------ll~d~~~~vr~~a~~~l~~l~~~~~~------~--~~~~~i~~~l~~ 324 (585)
...+. +++.... ...+.|.+.....+..+..+++.... . ......+..+..
T Consensus 272 ~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~ 351 (1023)
T 4hat_C 272 LIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQ 351 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHH
Confidence 11111 1111111 11234566666666666665553321 1 111222334555
Q ss_pred hccCCcHHHHHHHHHHHHhhchhhC--------HHHHHHhHHHHHHHhhcCCC---------------------hHHHH-
Q 007918 325 LSSDSSQHVRSALASVIMGMAPLLG--------KDATIEQLLPIFLSLLKDEF---------------------PDVRL- 374 (585)
Q Consensus 325 ~~~d~~~~vr~~a~~~l~~l~~~~~--------~~~~~~~l~~~l~~~l~d~~---------------------~~vr~- 374 (585)
....+++++=..++.....++...- ...+...+.+.+...+.-+. .....
T Consensus 352 ~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~ 431 (1023)
T 4hat_C 352 LSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYK 431 (1023)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHH
T ss_pred hhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHH
Confidence 5566677775555555555543221 12234456666665543221 00111
Q ss_pred HHHHHhHHhhhhhchhHHhhhHHHHHHHHhcC--CChHHHHHHHHHhHHHHHhhChh---hHHHHHHHHHHHHcc-----
Q 007918 375 NIISKLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQ----- 444 (585)
Q Consensus 375 ~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~--~~~~~r~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~----- 444 (585)
..-..|..++...+. ...+.+++.+.+.+.+ .+|+.|.+++.+++.++.....+ .+...++|.+.++..
T Consensus 432 ~~Rd~L~~l~~l~~~-~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~ 510 (1023)
T 4hat_C 432 SEREVLVYLTHLNVI-DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGK 510 (1023)
T ss_dssp HHHHHHHHHHHHCHH-HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHhccCHH-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccC
Confidence 111444444443344 3335667777665543 68999999999999999876543 445667888888775
Q ss_pred CCchHHHHHHHHHHHHHHHHhCHH-HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHH----------HHhcH
Q 007918 445 DKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----------TCSRL 513 (585)
Q Consensus 445 d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~----------~~~~i 513 (585)
|+...||..++.++|++++.+... .+.+.+++.+.+.+.+++..+..+|+.++..+++.++... +.+.+
T Consensus 511 d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~i 590 (1023)
T 4hat_C 511 DNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTI 590 (1023)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHH
Confidence 466678888999999998876432 2456777778888888899999999999999999877643 45666
Q ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH
Q 007918 514 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 546 (585)
Q Consensus 514 ~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~ 546 (585)
+..+.....+-.+.-+..+.++++.++...++.
T Consensus 591 l~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~ 623 (1023)
T 4hat_C 591 IRDIQKTTADLQPQQVHTFYKACGIIISEERSV 623 (1023)
T ss_dssp HHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCH
Confidence 666666666667788889999999999887654
No 61
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.53 E-value=2.3e-10 Score=123.32 Aligned_cols=557 Identities=10% Similarity=0.030 Sum_probs=326.8
Q ss_pred hHHHHHHHhhhHHHHHHhhChhhhhhhcccccccccCCchHHHHHHHHHHhccccccCCc----c---hHHhchHHHhhh
Q 007918 22 DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGV----E---HAHVLLPPLETL 94 (585)
Q Consensus 22 ~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~----~---~~~~l~~~l~~l 94 (585)
|+..|..|-+.|.++-+. + ..+......+......++++|.-++..|...+..++.+ + ....++..+...
T Consensus 21 d~~~r~~A~~~L~~~q~s--p-~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l~~~ 97 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSS--S-TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKEL 97 (980)
T ss_dssp CHHHHHHHHHHHHHHHHS--T-THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHcC--h-hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHh
Confidence 799999999988887543 2 23444444443322237899998888887655434333 2 123344444432
Q ss_pred h-hchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCc-cchhhHHhhhH----hhcCC---CChH--H---
Q 007918 95 C-TVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWF-TARVSACGLFH----IAYPS---APDI--L--- 160 (585)
Q Consensus 95 ~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~-~~r~~a~~~l~----~~~~~---~~~~--~--- 160 (585)
. .+..+.+|.....++..++...-++ .++.+++-+..+....+. ..-.....++. .+... .+.. .
T Consensus 98 ~~~~~~~~IrnKL~~~la~l~~~~~p~-~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~ 176 (980)
T 3ibv_A 98 SFLDEPAYISNAVQHLLTLLFLQLYPS-NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDN 176 (980)
T ss_dssp CSTTSCTHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHhCcc-cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhH
Confidence 1 1346789999999999998876443 233444444444433222 11112222333 22221 1110 0
Q ss_pred --------------HHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccc-hHHHHHHHHHHhccChhHHHHHHHHHH
Q 007918 161 --------------KTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAH-LKTDIMSIFEDLTQDDSVRLLAVEGCA 225 (585)
Q Consensus 161 --------------~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~l~~d~~vr~~a~~~l~ 225 (585)
.+.+..++.+..+..++.++..+.++++.+...++... ..+.+++.+..++.++.+|..|++++.
T Consensus 177 ~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~~~~r~~A~ecL~ 256 (980)
T 3ibv_A 177 LVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQIEELRCAACETMT 256 (980)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCChHHHHHHHHHHH
Confidence 11222233333333677889999999999888654432 235677777788888999999999999
Q ss_pred HHhhccCchhhhhhhH------HHHHHhcc-CCChHHHHHHHHHHHHHHHHh----CCc------------ccccchHHH
Q 007918 226 ALGKLLEPQDCVAHIL------PVIVNFSQ-DKSWRVRYMVANQLYELCEAV----GPE------------PTRMDLVPA 282 (585)
Q Consensus 226 ~l~~~~~~~~~~~~~~------~~l~~~~~-d~~~~vR~~~~~~l~~l~~~~----~~~------------~~~~~l~~~ 282 (585)
.+...-.+......++ +.+..+.. +.+..++...++.+..++..+ ... .....+++.
T Consensus 257 ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 336 (980)
T 3ibv_A 257 EIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPY 336 (980)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHH
T ss_pred HHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHH
Confidence 9987644321111122 22222222 456666666666665554331 111 111257888
Q ss_pred HHHhccCChHHHHHHHHHHHHHHHHhhC---H-----H---HHHHhhHHHHHHhcc---C----C----c-----HHHHH
Q 007918 283 YVRLLRDNEAEVRIAAAGKVTKFCRILN---P-----E---LAIQHILPCVKELSS---D----S----S-----QHVRS 335 (585)
Q Consensus 283 l~~ll~d~~~~vr~~a~~~l~~l~~~~~---~-----~---~~~~~i~~~l~~~~~---d----~----~-----~~vr~ 335 (585)
+...+.+++.+|-..++..+..+..... . + .+...+++.+..-+. | . + ...|.
T Consensus 337 lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk 416 (980)
T 3ibv_A 337 LIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRK 416 (980)
T ss_dssp HHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHH
T ss_pred HHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHH
Confidence 8889988888999888888887765421 1 1 122334444433221 1 1 1 13566
Q ss_pred HHHHHHHhhchhhCHHHHHH----hHHHHHHHhhc---CCChHHHHHHHHHhHHhhhhhchh--------HHhhhHHHHH
Q 007918 336 ALASVIMGMAPLLGKDATIE----QLLPIFLSLLK---DEFPDVRLNIISKLDQVNQVIGID--------LLSQSLLPAI 400 (585)
Q Consensus 336 ~a~~~l~~l~~~~~~~~~~~----~l~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~ll~~l 400 (585)
... .+-..+..++++.+.+ .+.+.+.+.+. +.++..+++++-+++.+++.+... ...+.+++.+
T Consensus 417 ~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll 495 (980)
T 3ibv_A 417 KLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQIL 495 (980)
T ss_dssp HHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHH
T ss_pred HHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHH
Confidence 666 6666677778777777 66677766663 345788999999999988875431 1223566666
Q ss_pred HHHhc-----CCChHHHHHHHHHhHHHHHhhCh-hhHHHHHHHHHHH--HccCCchHHHHHHHHHHHHHHHHhCHHH--H
Q 007918 401 VELAE-----DRHWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQ--WLQDKVYSIRDAAANNLKRLAEEFGPEW--A 470 (585)
Q Consensus 401 ~~~~~-----~~~~~~r~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~--~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~ 470 (585)
..+++ ++++.+|..+++.++...+.+.. ..+.+.+++.+.+ .+.+++..||.+|+.++..+++..+... +
T Consensus 496 ~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~ 575 (980)
T 3ibv_A 496 ALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNY 575 (980)
T ss_dssp HHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSS
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhH
Confidence 66655 78899999999999998887642 2233446666666 6778899999999999999999776531 1
Q ss_pred HhhhHHHHHhhhcC---c------------------chHHHHHHHHHHHHhhhhcC--hH---HHHhcHHHHHH----hh
Q 007918 471 MQHITPQVLEMINN---P------------------HYLYRMTILRAISLLAPVMG--SE---ITCSRLLPVVI----NA 520 (585)
Q Consensus 471 ~~~ll~~l~~~l~~---~------------------~~~~R~~a~~~l~~l~~~~~--~~---~~~~~i~~~l~----~~ 520 (585)
.+.++..+..++.- + ...-+....+++|.++...+ .+ .+...+++.+. ..
T Consensus 576 ~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~ 655 (980)
T 3ibv_A 576 TESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAA 655 (980)
T ss_dssp HHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344444444331 1 12346778888888886654 22 13344444333 23
Q ss_pred cCCC----CchHHH-HHHHHHHHHHhhhch--------HHHHhhHHHHHHHhcC--CCCccHHHHHHHHHHHHHHhhc
Q 007918 521 SKDR----VPNIKF-NVAKVLQSLIPIVDQ--------SMVEKTIRPCLVELTE--DPDVDVRFFATQAIQSIDHVMM 583 (585)
Q Consensus 521 l~d~----~~~vR~-~~~~~l~~l~~~~~~--------~~~~~~~~~~l~~l~~--D~~~~Vr~~a~~al~~l~~~l~ 583 (585)
+... +...+. ..+.+++.+...+.. ......+.+.+...++ -.+..||..++.+++++-..++
T Consensus 656 l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg 733 (980)
T 3ibv_A 656 LSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVG 733 (980)
T ss_dssp HTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTH
T ss_pred HhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc
Confidence 3221 111111 456666777765532 1222344444444333 4578999999999998876654
No 62
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.53 E-value=5.4e-10 Score=120.48 Aligned_cols=491 Identities=9% Similarity=0.048 Sum_probs=299.8
Q ss_pred cHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhcccccccccCCchHHHHHHHHHHhccccc----cCCcc---
Q 007918 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGVE--- 82 (585)
Q Consensus 10 ~i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~l~~~----~~~~~--- 82 (585)
.+..++..+.+++...|..|-+.|.++-+.-+ .+......+. .+.++++|..++..|.+.+.. ++..+
T Consensus 17 ~Le~av~~ly~p~~~~r~~A~~~L~~~q~sp~---aw~~~~~iL~--~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~ 91 (1023)
T 4hat_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDNPD---AWQKADQILQ--FSTNPQSKFIALSILDKLITRKWKLLPNDHRIG 91 (1023)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCTT---GGGGHHHHHH--HCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHcCcc---HHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence 46777888887777799999988887654322 2333344442 244689999988888765542 22211
Q ss_pred hHHhchHHHhhhhhch-----hhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhh----c
Q 007918 83 HAHVLLPPLETLCTVE-----ETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIA----Y 153 (585)
Q Consensus 83 ~~~~l~~~l~~l~~~~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~----~ 153 (585)
....++..+.....++ .+.+|.....++..++...-++ .++.+++-+..+.+.. +........++..+ .
T Consensus 92 Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~-~Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~ 169 (1023)
T 4hat_C 92 IRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ-NWPEFIPELIGSSSSS-VNVCENNMIVLKLLSEEVF 169 (1023)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChh-hchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHH
Confidence 2344555555544333 4678888899999988876443 3556666666665433 22233333333222 2
Q ss_pred C----CCChH-----------HHHHHHHHHHhhcC-CCchHHHHHHHHhHHHHHhhhcccc-hHHHHHHHHH-HhccChh
Q 007918 154 P----SAPDI-----------LKTELRSIYTQLCQ-DDMPMVRRSAASNLGKFAATVEPAH-LKTDIMSIFE-DLTQDDS 215 (585)
Q Consensus 154 ~----~~~~~-----------~~~~l~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~-~l~~d~~ 215 (585)
. ..+.. ....+.+++...++ ..++.+...+.++++.+...++... ..+.+++.+. .++.++.
T Consensus 170 ~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~~~~ 249 (1023)
T 4hat_C 170 DFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTSPD 249 (1023)
T ss_dssp TSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHSHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcCCHH
Confidence 1 12211 12345555555553 3567788889999999887654322 2244666666 6777788
Q ss_pred HHHHHHHHHHHHhhc-c-Cch-hhhhh-------hHHHH-HHh-------------ccCCChHHHHHHHHHHHHHHHHhC
Q 007918 216 VRLLAVEGCAALGKL-L-EPQ-DCVAH-------ILPVI-VNF-------------SQDKSWRVRYMVANQLYELCEAVG 271 (585)
Q Consensus 216 vr~~a~~~l~~l~~~-~-~~~-~~~~~-------~~~~l-~~~-------------~~d~~~~vR~~~~~~l~~l~~~~~ 271 (585)
.|..|++++..++.. . ++. .+.+. +++.+ ..+ .++.+.......++.+..+++...
T Consensus 250 ~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~ 329 (1023)
T 4hat_C 250 TRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNR 329 (1023)
T ss_dssp HHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999873 3 221 12211 12222 111 123345555666667766666543
Q ss_pred Cccc--c--cch----HHHHHHhccCChHHHHHHHHHHHHHHHHhhCH--------HHHHHhhHHHHHHhccCC------
Q 007918 272 PEPT--R--MDL----VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--------ELAIQHILPCVKELSSDS------ 329 (585)
Q Consensus 272 ~~~~--~--~~l----~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~--------~~~~~~i~~~l~~~~~d~------ 329 (585)
.-.. + ..+ +..+......++.++-..+++.+..+.+.+-. ..+...+.+.+.+-+.-+
T Consensus 330 ~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~iv 409 (1023)
T 4hat_C 330 ALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVV 409 (1023)
T ss_dssp GGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEE
T ss_pred HHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccC
Confidence 2111 1 122 23555666677889988999999888764321 112234444444332211
Q ss_pred -----cH----------HHHH-HHHHHHHhhchhhCHHHHHHhHHHHHHHhhcC--CChHHHHHHHHHhHHhhhhhchh-
Q 007918 330 -----SQ----------HVRS-ALASVIMGMAPLLGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQVIGID- 390 (585)
Q Consensus 330 -----~~----------~vr~-~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~- 390 (585)
+| .... ..-..+..++...+ ....+.+.+.+.+.+.+ .++..|++++.+++.+++....+
T Consensus 410 e~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~-~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~ 488 (1023)
T 4hat_C 410 ENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDT 488 (1023)
T ss_dssp ECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHH
T ss_pred CCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchh
Confidence 11 1111 11134444443333 45566777777776664 57999999999999999877643
Q ss_pred --HHhhhHHHHHHHHhc-----CCChHHHHHHHHHhHHHHHhhC-hhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Q 007918 391 --LLSQSLLPAIVELAE-----DRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 462 (585)
Q Consensus 391 --~~~~~ll~~l~~~~~-----~~~~~~r~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 462 (585)
.+...++|.+..+.+ |+...+|..++..++...+.+. ...+.+.++..+...+.|+++.|..+|+.++..++
T Consensus 489 e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~ 568 (1023)
T 4hat_C 489 EKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIV 568 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 344567777777775 3556788889999998877653 12234556777788888899999999999999999
Q ss_pred HHhCHHH----------HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHH
Q 007918 463 EEFGPEW----------AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI 508 (585)
Q Consensus 463 ~~~~~~~----------~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~ 508 (585)
...+... +.+.++..+.....+-...-+..+.++++.++...+...
T Consensus 569 ~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~ 624 (1023)
T 4hat_C 569 QKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVA 624 (1023)
T ss_dssp HHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHH
T ss_pred HHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHh
Confidence 9877654 234444445555555567778899999999999887543
No 63
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.52 E-value=5.6e-13 Score=121.69 Aligned_cols=223 Identities=16% Similarity=0.129 Sum_probs=155.0
Q ss_pred HHHHHHhhcCCChHHHHHHHHHhHHhhhhhch---hHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhC---hhhH
Q 007918 358 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFF 431 (585)
Q Consensus 358 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~~ 431 (585)
.+.+...++++++++|..|+.+|..+...-.. .......+|.+..++.++++.+|..++.++..++.... ....
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 34455555666666666666666544432111 11223456777777777777777777777776654211 1112
Q ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHH---HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChH-
Q 007918 432 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE- 507 (585)
Q Consensus 432 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~- 507 (585)
....+|.+..++.++++.+|..|+.+|+.++...... ......+|.+..++.++++.+|..++.++++++...+..
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 173 (252)
T 4db8_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 173 (252)
T ss_dssp HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 2236788888888888999999999998887532221 234568899999999999999999999999998643221
Q ss_pred --HHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch---HHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007918 508 --ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 508 --~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~ 580 (585)
.....++|.+..+++++++.+|..++.+|+.+....+. ......+++.|..++.+.++++|..|.+++..+++
T Consensus 174 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 12367789999999999999999999999999753322 12344588999999999999999999999987753
No 64
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.52 E-value=2.6e-12 Score=117.26 Aligned_cols=188 Identities=12% Similarity=0.066 Sum_probs=116.5
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHhHHhhhhhc---hhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhC---hhh
Q 007918 357 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGF 430 (585)
Q Consensus 357 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~ 430 (585)
.+|.+..+++++++.+|..++.+|+.++..-. ........+|.+..++.++++.+|..++.++..++.... ...
T Consensus 45 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 124 (252)
T 4hxt_A 45 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 124 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34444444444444444444444444443210 001112345555555555555555555555555542110 111
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcCh-
Q 007918 431 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS- 506 (585)
Q Consensus 431 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~- 506 (585)
.....+|.+.+++.++++.+|..++.+|+.++..... .......+|.+..++.+++..+|..++.++++++.....
T Consensus 125 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 204 (252)
T 4hxt_A 125 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA 204 (252)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 1223577778888888888888888888888653211 123356888888888888889999999999998863221
Q ss_pred --HHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc
Q 007918 507 --EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 544 (585)
Q Consensus 507 --~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~ 544 (585)
......+++.+..+++++++.+|..++++|+.+....+
T Consensus 205 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 205 IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 11245678999999999999999999999999987644
No 65
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.52 E-value=5.9e-13 Score=119.63 Aligned_cols=192 Identities=11% Similarity=0.191 Sum_probs=152.6
Q ss_pred HHHHHHHHHhccC--hhHHHHHHHHHHH-HhhccCc----hhhhhhhHHHHHHhc-cCCChHHHHHHHHHHHHHHHHhC-
Q 007918 201 TDIMSIFEDLTQD--DSVRLLAVEGCAA-LGKLLEP----QDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVG- 271 (585)
Q Consensus 201 ~~l~~~l~~l~~d--~~vr~~a~~~l~~-l~~~~~~----~~~~~~~~~~l~~~~-~d~~~~vR~~~~~~l~~l~~~~~- 271 (585)
+.+.+-|...+++ |..|..++..+.. +.+..++ ......++..+.+.+ +|.+..||..++.+++.++..++
T Consensus 15 ~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~ 94 (249)
T 2qk1_A 15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT 94 (249)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT
T ss_pred hhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 3333334444444 7899999999999 8754332 112245677788888 79999999999999999999998
Q ss_pred Cccc---ccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHH---HHHhhHHHHHHhccCCcHHHHHHHHHHHHhhc
Q 007918 272 PEPT---RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL---AIQHILPCVKELSSDSSQHVRSALASVIMGMA 345 (585)
Q Consensus 272 ~~~~---~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~ 345 (585)
+... ...++|.++..++|....||.++..++..++...++.. +.+.+++.+...+++++|.+|..++.+++.+.
T Consensus 95 ~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 95 PGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASM 174 (249)
T ss_dssp TTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 6543 23689999999999999999999999999999874321 12467778888889999999999999999998
Q ss_pred hhhCH---H--HHH-HhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHH
Q 007918 346 PLLGK---D--ATI-EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 392 (585)
Q Consensus 346 ~~~~~---~--~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 392 (585)
...+. . .+. +.++|.+.+++.|+++.||.+|..+++.++..+|.+.+
T Consensus 175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~ 227 (249)
T 2qk1_A 175 KEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTF 227 (249)
T ss_dssp HHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGG
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHH
Confidence 87763 2 356 88999999999999999999999999999999998654
No 66
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.51 E-value=1.8e-12 Score=118.38 Aligned_cols=224 Identities=14% Similarity=0.108 Sum_probs=154.5
Q ss_pred chHHHHHHhccCChHHHHHHHHHHHHHHHHhhCH---HHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCH--H-
Q 007918 278 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--D- 351 (585)
Q Consensus 278 ~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~- 351 (585)
.-++.+...+.++++++|..++..+..+...... .......+|.+..++.++++.+|..++.+++.++..... .
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4577888888888888998888888765543111 122345778888888888899999999999988753221 1
Q ss_pred HHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchh---HHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhCh
Q 007918 352 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 428 (585)
Q Consensus 352 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~ 428 (585)
......+|.+..+++++++.+|..++.+|+.++..-... ......+|.+..++.++++.+|..++.++..++..-..
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 122347888889999989999999999999987643322 22345788888888888888999888888888643211
Q ss_pred ---hhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhh
Q 007918 429 ---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLA 501 (585)
Q Consensus 429 ---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~ 501 (585)
.......+|.+..++.+++..+|..|+.+|+.++..... .......++.+..++.+++..+|..|+.++.+++
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 112234577888888888888888888888888642111 1122345666666666666666666666666554
No 67
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.51 E-value=9.7e-13 Score=118.24 Aligned_cols=194 Identities=13% Similarity=0.236 Sum_probs=139.7
Q ss_pred hhhHHHHHHhccCCChHHHHHHHHHHHH-HHHHhCCcc----cccchHHHHHHhc-cCChHHHHHHHHHHHHHHHHhhC-
Q 007918 238 AHILPVIVNFSQDKSWRVRYMVANQLYE-LCEAVGPEP----TRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILN- 310 (585)
Q Consensus 238 ~~~~~~l~~~~~d~~~~vR~~~~~~l~~-l~~~~~~~~----~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~l~~~~~- 310 (585)
+.+-+-+.+.+++++|.-|..++..+.. +....++-. ....++..+...+ +|.+..||..++.+++.+++.++
T Consensus 15 ~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~ 94 (249)
T 2qk1_A 15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT 94 (249)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT
T ss_pred hhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 3333445566788999999999999888 765433311 1235677777888 78888899999999999888776
Q ss_pred HH---HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHH---HHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhh
Q 007918 311 PE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 384 (585)
Q Consensus 311 ~~---~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 384 (585)
+. .+...++|.+...++|+...||..+..++..++...++. .+.+.+++.+...+++.++.+|..++..++.+.
T Consensus 95 ~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 95 PGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASM 174 (249)
T ss_dssp TTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 33 345677888888888888888888888888887766321 114456677777777778888888888888887
Q ss_pred hhhch--h---HHh-hhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhH
Q 007918 385 QVIGI--D---LLS-QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 431 (585)
Q Consensus 385 ~~~~~--~---~~~-~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~ 431 (585)
...+. . .+. +.++|.+.+++.|.+..+|..+.++++.+.+.+|...+
T Consensus 175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~ 227 (249)
T 2qk1_A 175 KEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTF 227 (249)
T ss_dssp HHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGG
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHH
Confidence 76653 2 234 56777777777777777888888888887777776544
No 68
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.47 E-value=8.6e-11 Score=117.20 Aligned_cols=303 Identities=15% Similarity=0.135 Sum_probs=193.6
Q ss_pred hHHHHHHhccCCChHHHHHHHHHHHHHHHHh----CCcccccchHHHHHHhccC-ChHHHHHHHHHHHHHHHHhhCH-HH
Q 007918 240 ILPVIVNFSQDKSWRVRYMVANQLYELCEAV----GPEPTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNP-EL 313 (585)
Q Consensus 240 ~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~----~~~~~~~~l~~~l~~ll~d-~~~~vr~~a~~~l~~l~~~~~~-~~ 313 (585)
.+|.|.+++.+++..++..++.+|..++..- .........+|.++.++.. .+.++++.++.+|..++..-.. ..
T Consensus 91 ~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~ 170 (584)
T 3l6x_A 91 GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKME 170 (584)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHH
T ss_pred CcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHH
Confidence 4566666666666777777777776665310 0011123457777777764 4567777777777776652111 12
Q ss_pred HHHhhHHHHHHhc------------------cCCcHHHHHHHHHHHHhhchhhCH--HHHH--HhHHHHHHHhhc-----
Q 007918 314 AIQHILPCVKELS------------------SDSSQHVRSALASVIMGMAPLLGK--DATI--EQLLPIFLSLLK----- 366 (585)
Q Consensus 314 ~~~~i~~~l~~~~------------------~d~~~~vr~~a~~~l~~l~~~~~~--~~~~--~~l~~~l~~~l~----- 366 (585)
+....+|.+.+++ ...+..|+..++.+|.+++..-.. .... .-+.+.+..+++
T Consensus 171 I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~ 250 (584)
T 3l6x_A 171 IVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQ 250 (584)
T ss_dssp HHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcc
Confidence 2233455555543 122467888888888888753211 1111 123333333332
Q ss_pred -CCChHHHHHHHHHhHHhhhhhc---------------------------hhH-HhhhHHHHHHHHhc-CCChHHHHHHH
Q 007918 367 -DEFPDVRLNIISKLDQVNQVIG---------------------------IDL-LSQSLLPAIVELAE-DRHWRVRLAII 416 (585)
Q Consensus 367 -d~~~~vr~~a~~~l~~l~~~~~---------------------------~~~-~~~~ll~~l~~~~~-~~~~~~r~~~~ 416 (585)
+.+....+.|+.+|..++.... .+. +....++.+..++. ..++.++..++
T Consensus 251 ~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa 330 (584)
T 3l6x_A 251 KDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASA 330 (584)
T ss_dssp TCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHH
Confidence 3455677777777776654321 111 11245677777775 56789999999
Q ss_pred HHhHHHHHhhCh--hh-----HHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCH-HHHHhhhHHHHHhhhcCc---
Q 007918 417 EYIPLLASQLGV--GF-----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-EWAMQHITPQVLEMINNP--- 485 (585)
Q Consensus 417 ~~l~~l~~~~~~--~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~ll~~l~~~l~~~--- 485 (585)
.+|..++..-+. .. .....+|.+..++..++..|+..|+.+|+.++..-.. ..+....+|.++.++.++
T Consensus 331 ~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~ 410 (584)
T 3l6x_A 331 GAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQN 410 (584)
T ss_dssp HHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCS
T ss_pred HHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCccc
Confidence 999988643211 11 1135689999999999999999999999999875332 234567899999998776
Q ss_pred -----chHHHHHHHHHHHHhhhhcCh---HHHHhcHHHHHHhhcCCC--CchHHHHHHHHHHHHHhh
Q 007918 486 -----HYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPI 542 (585)
Q Consensus 486 -----~~~~R~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~l~d~--~~~vR~~~~~~l~~l~~~ 542 (585)
+..++..++.++++++..-.. .......+|.|..++.+. .+.++..|+.+|..++.+
T Consensus 411 ~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 411 SSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp GGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred ccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 356788999999988753221 123457789999999875 889999999999999754
No 69
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.46 E-value=3.6e-10 Score=116.88 Aligned_cols=332 Identities=11% Similarity=0.031 Sum_probs=225.2
Q ss_pred CchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhcc----C-hhHHHHHHHHHHHHhhccCchhhhhhhHHHHHHhcc
Q 007918 175 DMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ----D-DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ 249 (585)
Q Consensus 175 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~----d-~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~ 249 (585)
...+.+-.++.+||-+...... .-+..+...+. + +.+|..|+.+++-+......+ .+..+...+.
T Consensus 370 ~~~~~k~sA~aSLGlIh~g~~~-----~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~-----~~~lL~~~L~ 439 (963)
T 4ady_A 370 AQNWAKFTATASLGVIHKGNLL-----EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD-----TTDYLKNIIV 439 (963)
T ss_dssp CCTHHHHHHHHHHHHHTSSCTT-----THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH-----HHHHHHHHHH
T ss_pred cchHHHHHHHHHhhhhccCchH-----HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH-----HHHHHHHHHc
Confidence 3456778888888877553321 12344444443 2 679999999999987765532 3444555444
Q ss_pred CCC--------hHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHH
Q 007918 250 DKS--------WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPC 321 (585)
Q Consensus 250 d~~--------~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~ 321 (585)
+++ +.+|..++..||.+.-..+ .+++++.+...+.|++..+|..++.+|+.+.-..+.....+.++..
T Consensus 440 ~~~~~~~~~~~~~ir~gAaLGLGla~~GS~----~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~ 515 (963)
T 4ady_A 440 ENSGTSGDEDVDVLLHGASLGIGLAAMGSA----NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTY 515 (963)
T ss_dssp HHSSCCSCHHHHHHHHHHHHHHHHHSTTCC----CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred CccccccccccHHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHH
Confidence 433 7899999999987544333 2356777777777777788888988998875555554444555544
Q ss_pred HHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHH
Q 007918 322 VKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 401 (585)
Q Consensus 322 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~ 401 (585)
+ .++.+..+|+.++..|+.+. +|.+...+ .++..+..+.++.+|.+++-+++.-+-..|.....+.++ .
T Consensus 516 ~---~e~~~e~vrR~aalgLGll~--~g~~e~~~---~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL---~ 584 (963)
T 4ady_A 516 S---QETQHGNITRGLAVGLALIN--YGRQELAD---DLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLL---H 584 (963)
T ss_dssp H---HHCSCHHHHHHHHHHHHHHT--TTCGGGGH---HHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHH---H
T ss_pred H---hccCcHHHHHHHHHHHHhhh--CCChHHHH---HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHH---H
Confidence 4 34667889999999998763 33322222 223344457889999999999887766666644333333 3
Q ss_pred HHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhh
Q 007918 402 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM 481 (585)
Q Consensus 402 ~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~ 481 (585)
.+.+|.+..+|..++..++.+.- |... .+...+..+..+.++.||..|..++|.++...+. ..++..+..+
T Consensus 585 ~~~~d~~d~VRraAViaLGlI~~--g~~e---~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L 655 (963)
T 4ady_A 585 VAVSDSNDDVRRAAVIALGFVLL--RDYT---TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPL 655 (963)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHTS--SSCS---SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHH
T ss_pred HhccCCcHHHHHHHHHHHHhhcc--CCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHH
Confidence 34568888899999999887642 3221 1223333356788999999999999998754332 4577788888
Q ss_pred hcCcchHHHHHHHHHHHHhhhhcChHH--HHhcHHHHHHhhcCC--CCchHHHHHHHHHHHHH
Q 007918 482 INNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKD--RVPNIKFNVAKVLQSLI 540 (585)
Q Consensus 482 l~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~l~d--~~~~vR~~~~~~l~~l~ 540 (585)
.+|++..||.+|+.+++.+........ ....++..+.+...| .++..|..+.-+.|.+-
T Consensus 656 ~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 656 TKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMN 718 (963)
T ss_dssp HTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 999999999999999999986544321 345666777777765 46789998888888874
No 70
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.45 E-value=3.4e-11 Score=119.50 Aligned_cols=303 Identities=14% Similarity=0.098 Sum_probs=179.2
Q ss_pred hHHHHHHhccCCChHHHHHHHHHHHHHHHHhC---CcccccchHHHHHHhcc-CChHHHHHHHHHHHHHHHHhhCH-HHH
Q 007918 240 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNP-ELA 314 (585)
Q Consensus 240 ~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll~-d~~~~vr~~a~~~l~~l~~~~~~-~~~ 314 (585)
.+|.+.+++.++++.++..++.+|..++..-+ ........+|.+++++. +.+++++..++.+|..++..-.. ..+
T Consensus 45 ~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i 124 (457)
T 1xm9_A 45 GICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL 124 (457)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHH
Confidence 45555556666666666666666666653200 01112245666666666 55566666666666666654111 112
Q ss_pred HHhhHHHHHHhc--------cCC--------cHHHHHHHHHHHHhhchhhCH-HHHH--HhHHHHHHHhhcC------CC
Q 007918 315 IQHILPCVKELS--------SDS--------SQHVRSALASVIMGMAPLLGK-DATI--EQLLPIFLSLLKD------EF 369 (585)
Q Consensus 315 ~~~i~~~l~~~~--------~d~--------~~~vr~~a~~~l~~l~~~~~~-~~~~--~~l~~~l~~~l~d------~~ 369 (585)
.+..+|.+..++ .++ +..+...++.++.+++..-.. .... +..+|.+..++++ .+
T Consensus 125 ~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~ 204 (457)
T 1xm9_A 125 IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCD 204 (457)
T ss_dssp HHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTT
T ss_pred HhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCc
Confidence 225556666655 222 234445666777666654100 0111 1344555544442 22
Q ss_pred hHHHHHHHHHhHHhhhhh----------------------------------------------------chh-HHhhhH
Q 007918 370 PDVRLNIISKLDQVNQVI----------------------------------------------------GID-LLSQSL 396 (585)
Q Consensus 370 ~~vr~~a~~~l~~l~~~~----------------------------------------------------~~~-~~~~~l 396 (585)
..+...++..|..++... |.+ .+....
T Consensus 205 ~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 284 (457)
T 1xm9_A 205 DKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDA 284 (457)
T ss_dssp CTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHH
T ss_pred hHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcch
Confidence 334444444444332100 001 112345
Q ss_pred HHHHHHHhc-CCChHHHHHHHHHhHHHHHhhChh--hH------HHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCH
Q 007918 397 LPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG--FF------DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 467 (585)
Q Consensus 397 l~~l~~~~~-~~~~~~r~~~~~~l~~l~~~~~~~--~~------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 467 (585)
++.+..++. .++..++..++.++..+...-+.. .. ....+|.+.+++.+++.+|+..|+.+|..++..-..
T Consensus 285 l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~ 364 (457)
T 1xm9_A 285 IRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL 364 (457)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGG
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHH
Confidence 677777665 456889999999999886432221 11 124579999999999999999999999999763221
Q ss_pred -HHHHhhhHHHHHhhhcCcch------HHHHHHHHHHHHhhhhcChHH---HHhcHHHHHHhhcCCC-CchHHHHHHHHH
Q 007918 468 -EWAMQHITPQVLEMINNPHY------LYRMTILRAISLLAPVMGSEI---TCSRLLPVVINASKDR-VPNIKFNVAKVL 536 (585)
Q Consensus 468 -~~~~~~ll~~l~~~l~~~~~------~~R~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~l~d~-~~~vR~~~~~~l 536 (585)
..+....+|.+.+++.+++. .+...++.+++++...-+... .....++.|..++.++ ++.++..++.+|
T Consensus 365 ~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L 444 (457)
T 1xm9_A 365 HRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLL 444 (457)
T ss_dssp HHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 12345688999999877643 577788889998876433221 1346788899999888 899999999999
Q ss_pred HHHHhh
Q 007918 537 QSLIPI 542 (585)
Q Consensus 537 ~~l~~~ 542 (585)
..++.+
T Consensus 445 ~~~~~~ 450 (457)
T 1xm9_A 445 SDMWSS 450 (457)
T ss_dssp HTTSSS
T ss_pred HHHHcc
Confidence 988643
No 71
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.41 E-value=2.9e-10 Score=110.79 Aligned_cols=245 Identities=13% Similarity=0.057 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHhhCHH----HHHHhhHHHHHHhcc-----------CCcHHHHHHHHHHHHhhchhhCH--HHH--HHhH
Q 007918 297 AAAGKVTKFCRILNPE----LAIQHILPCVKELSS-----------DSSQHVRSALASVIMGMAPLLGK--DAT--IEQL 357 (585)
Q Consensus 297 ~a~~~l~~l~~~~~~~----~~~~~i~~~l~~~~~-----------d~~~~vr~~a~~~l~~l~~~~~~--~~~--~~~l 357 (585)
.|+.+|..++.. ++ ......++.+..++. +.++.++..++.+|.+++..-.. ..+ ....
T Consensus 167 qAv~aL~nls~~--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 244 (458)
T 3nmz_A 167 PAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244 (458)
T ss_dssp HHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred HHHHHHHHhcCC--HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence 677777776432 22 112245566666653 23577899999999999854321 122 2346
Q ss_pred HHHHHHhhcCCChHHHHHHHHHhHHhhhhhch---hH-HhhhHHHHHHHH-hcCCChHHHHHHHHHhHHHHHhh-C--hh
Q 007918 358 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DL-LSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQL-G--VG 429 (585)
Q Consensus 358 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~-~~~~ll~~l~~~-~~~~~~~~r~~~~~~l~~l~~~~-~--~~ 429 (585)
+|.+..++.+.+++++..|+.+|..++..-.. .. .....+|.|..+ ..+.+..++..++.++..++... + ..
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~ 324 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 324 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence 89999999999999999999999998753111 11 123567888886 56678889998888888887632 1 11
Q ss_pred hH-HHHHHHHHHHHccCCch----HHHHHHHHHHHHHHHH--hCHHH----HHhhhHHHHHhhhcCcchHHHHHHHHHHH
Q 007918 430 FF-DDKLGALCMQWLQDKVY----SIRDAAANNLKRLAEE--FGPEW----AMQHITPQVLEMINNPHYLYRMTILRAIS 498 (585)
Q Consensus 430 ~~-~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~l~~~--~~~~~----~~~~ll~~l~~~l~~~~~~~R~~a~~~l~ 498 (585)
.. ....+|.+..++.+... +++..|+.+|..++.. .+++. .....+|.++.++.+++..++..|+.++.
T Consensus 325 I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~ 404 (458)
T 3nmz_A 325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 404 (458)
T ss_dssp HHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHH
Confidence 11 23467888888876543 5999999999998863 23321 23567899999999999999999999999
Q ss_pred HhhhhcCh---HHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh
Q 007918 499 LLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 543 (585)
Q Consensus 499 ~l~~~~~~---~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~ 543 (585)
+++..... .......+|.|..++.++++.+|..++.+|..+...-
T Consensus 405 nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 405 NLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99842111 1124567899999999999999999999999998653
No 72
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.39 E-value=1.7e-10 Score=112.52 Aligned_cols=245 Identities=11% Similarity=0.017 Sum_probs=173.6
Q ss_pred HHHHHHHhhchhhCHHH--HHHhHHHHHHHhhc-----------CCChHHHHHHHHHhHHhhhhhchh--HH--hhhHHH
Q 007918 336 ALASVIMGMAPLLGKDA--TIEQLLPIFLSLLK-----------DEFPDVRLNIISKLDQVNQVIGID--LL--SQSLLP 398 (585)
Q Consensus 336 ~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~-----------d~~~~vr~~a~~~l~~l~~~~~~~--~~--~~~ll~ 398 (585)
.|+.+|++++..-.... ...-.++.+..++. +.++.++..|+.+|..++..-... .+ ....+|
T Consensus 167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp 246 (458)
T 3nmz_A 167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR 246 (458)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH
Confidence 77888888754321111 12234555666652 124678999999999998543211 22 235689
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHHhhCh---h-hHHHHHHHHHHHH-ccCCchHHHHHHHHHHHHHHHHhC---HHHH
Q 007918 399 AIVELAEDRHWRVRLAIIEYIPLLASQLGV---G-FFDDKLGALCMQW-LQDKVYSIRDAAANNLKRLAEEFG---PEWA 470 (585)
Q Consensus 399 ~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~-~~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~---~~~~ 470 (585)
.|..++.+++..++..++.++..++..-+. . ......+|.+..+ +.+.+..++..|+.+|..++.... ....
T Consensus 247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~ 326 (458)
T 3nmz_A 247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 326 (458)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 999999999999999999999988642111 1 1222357788886 566788999999999999987321 1222
Q ss_pred -HhhhHHHHHhhhcCcch----HHHHHHHHHHHHhhhh--cChH----HHHhcHHHHHHhhcCCCCchHHHHHHHHHHHH
Q 007918 471 -MQHITPQVLEMINNPHY----LYRMTILRAISLLAPV--MGSE----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 539 (585)
Q Consensus 471 -~~~ll~~l~~~l~~~~~----~~R~~a~~~l~~l~~~--~~~~----~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l 539 (585)
....+|.+..++.+++. .++..++.++.+++.. .+.+ ......+|.|+.++.+.+..++..++.+|..+
T Consensus 327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nL 406 (458)
T 3nmz_A 327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 406 (458)
T ss_dssp HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 35688999999876543 4899999999998752 1222 12356789999999999999999999999999
Q ss_pred HhhhchH---HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007918 540 IPIVDQS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 540 ~~~~~~~---~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~ 580 (585)
....... ....-.+|.|..++...+..+|..|++|+..|..
T Consensus 407 a~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 407 SARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp HSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 7432221 2334578999999999999999999999998864
No 73
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.39 E-value=2.5e-11 Score=107.26 Aligned_cols=187 Identities=15% Similarity=0.109 Sum_probs=137.3
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhC---hhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhC---H
Q 007918 394 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---P 467 (585)
Q Consensus 394 ~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~ 467 (585)
+...|.+..++.++++.+|..++..+..++..-. ........+|.+..++.+++..+|..|+.+|+.++.... .
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 3455666667777777777777777776653211 111223467888888888899999999999998864211 1
Q ss_pred HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChH---HHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc
Q 007918 468 EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 544 (585)
Q Consensus 468 ~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~ 544 (585)
.......+|.+..++.+++..+|..++.++++++...... ......+|.+..+++++++.+|..++.+|..+....+
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 1233568899999999999999999999999998632221 1246689999999999999999999999999986532
Q ss_pred hH---HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007918 545 QS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 545 ~~---~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~ 580 (585)
.. ......++.|..++.+.+++||..|.+++..+++
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 22 2334688999999999999999999999998763
No 74
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.36 E-value=1.1e-10 Score=122.39 Aligned_cols=284 Identities=15% Similarity=0.183 Sum_probs=216.6
Q ss_pred HHHHHHHHHHHHHHhhCHH-HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCH----HHHHHhHHHHHHHhhcCC
Q 007918 294 VRIAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----DATIEQLLPIFLSLLKDE 368 (585)
Q Consensus 294 vr~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~ 368 (585)
-+..+...+..+...-+.. .....+...+.+.+.++... +.++..+..++...+. +.+.-.++|.+.....|.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk 107 (986)
T 2iw3_A 30 NRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNK 107 (986)
T ss_dssp THHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCC
Confidence 3455556666654421111 11124566777777776555 8888899998876642 444445688889999999
Q ss_pred ChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCC-ChHHHHHHHHHhHHHHHhhChh--hHHHHHHHHHHHHccC
Q 007918 369 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQD 445 (585)
Q Consensus 369 ~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~-~~~~r~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d 445 (585)
...||.+|..+...+...+.++.. ..++|.+...+.+. .|+.+..++..++.+++..+.. ...+.++|.+...+.|
T Consensus 108 ~~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d 186 (986)
T 2iw3_A 108 DKEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWD 186 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhccc
Confidence 999999999999999999998877 77899999877654 6999999999999999876322 2346789999999999
Q ss_pred CchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhc-ChHHHHhcHHHHHHhhcCCC
Q 007918 446 KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM-GSEITCSRLLPVVINASKDR 524 (585)
Q Consensus 446 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~-~~~~~~~~i~~~l~~~l~d~ 524 (585)
...+|..+|..++..+|..+++.. .+.++|.+++.+.+|+. -..++..|+...=.- -......-+.|.|.+.+++.
T Consensus 187 ~k~~v~~~~~~~~~~~~~~~~n~d-~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~ 263 (986)
T 2iw3_A 187 TKKEVKAAATAAMTKATETVDNKD-IERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNER 263 (986)
T ss_dssp SSHHHHHHHHHHHHHHGGGCCCTT-TGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSS
T ss_pred CcHHHHHHHHHHHHHHHhcCCCcc-hhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccC
Confidence 999999999999999999887653 46689999999999854 223344443322110 11224678899999999999
Q ss_pred CchHHHHHHHHHHHHHhhhchH----HHHhhHHHHHHH-hcCCCCccHHHHHHHHHHHHHHhhc
Q 007918 525 VPNIKFNVAKVLQSLIPIVDQS----MVEKTIRPCLVE-LTEDPDVDVRFFATQAIQSIDHVMM 583 (585)
Q Consensus 525 ~~~vR~~~~~~l~~l~~~~~~~----~~~~~~~~~l~~-l~~D~~~~Vr~~a~~al~~l~~~l~ 583 (585)
...++..++-.+.+++.-..++ .|.+.++|.|.+ .-.-.+|++|..|.+|+..+.++..
T Consensus 264 ~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 264 ETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp SHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred cchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999877654 677889999998 4556799999999999999988754
No 75
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.32 E-value=4.3e-08 Score=105.29 Aligned_cols=342 Identities=9% Similarity=0.033 Sum_probs=194.4
Q ss_pred HHHHHHHHHhccC---hhHHHHHHHHHHHHhhccCchhh-hhhhHHHH-HHhccCCChHHHHHHHHHHHHHHHHhCCccc
Q 007918 201 TDIMSIFEDLTQD---DSVRLLAVEGCAALGKLLEPQDC-VAHILPVI-VNFSQDKSWRVRYMVANQLYELCEAVGPEPT 275 (585)
Q Consensus 201 ~~l~~~l~~l~~d---~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~l-~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~ 275 (585)
+.+.+++...++. +.+...++++++.+....+-... ...+++.+ ..+++ ++..|..|++||..++..- .+..
T Consensus 205 ~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~-~~~~ 281 (1073)
T 3gjx_A 205 SQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVS-VSQY 281 (1073)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSC-SGGG
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhcc-ccch
Confidence 3444555444432 56777888888888887765432 34566766 45554 5678999999999887641 1111
Q ss_pred ccch---HHHHH----Hhc-------------cCChHHHHHHHHHHHHHHHHhhC------HH--HHHHhhHHHHHHhcc
Q 007918 276 RMDL---VPAYV----RLL-------------RDNEAEVRIAAAGKVTKFCRILN------PE--LAIQHILPCVKELSS 327 (585)
Q Consensus 276 ~~~l---~~~l~----~ll-------------~d~~~~vr~~a~~~l~~l~~~~~------~~--~~~~~i~~~l~~~~~ 327 (585)
.+.+ +..++ ..+ .+.|.+.-...+..+..+++... ++ ......+.++..+..
T Consensus 282 ~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~ 361 (1073)
T 3gjx_A 282 EEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSE 361 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhC
Confidence 1111 11111 111 23334444444455544443221 11 111223334455555
Q ss_pred CCcHHHHHHHHHHHHhhchhhC----------------------H-----HHHHHhHHHHHHHhhcCCC-----------
Q 007918 328 DSSQHVRSALASVIMGMAPLLG----------------------K-----DATIEQLLPIFLSLLKDEF----------- 369 (585)
Q Consensus 328 d~~~~vr~~a~~~l~~l~~~~~----------------------~-----~~~~~~l~~~l~~~l~d~~----------- 369 (585)
.++.++-..+......+...+- . ..+...+...+...+.-+.
T Consensus 362 ~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge 441 (1073)
T 3gjx_A 362 VEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGE 441 (1073)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccch
Confidence 6666665555554444332210 0 1112223333333322110
Q ss_pred ---------h--HHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhc--CCChHHHHHHHHHhHHHHHhhCh---hhHHH
Q 007918 370 ---------P--DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGV---GFFDD 433 (585)
Q Consensus 370 ---------~--~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~--~~~~~~r~~~~~~l~~l~~~~~~---~~~~~ 433 (585)
. .++...-.++..+. .++.+.....+++.+.+.+. ..+|..+.+++.+++.++....+ ..+.+
T Consensus 442 ~~re~~~d~~~~~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp 520 (1073)
T 3gjx_A 442 VVREFMKDTDSINLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV 520 (1073)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH
Confidence 0 12222233333322 34444443556666665443 35799999999999999876653 24556
Q ss_pred HHHHHHHHHccCC-----chHHHHHHHHHHHHHHHHhCHH-HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChH
Q 007918 434 KLGALCMQWLQDK-----VYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 507 (585)
Q Consensus 434 ~l~~~l~~~l~d~-----~~~vr~~a~~~l~~l~~~~~~~-~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~ 507 (585)
.+++.+..+...+ ..-++...+..+|++.+.+... .+.+.++..+.+.+.+++..+..+|+.++..++..|+..
T Consensus 521 ~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~ 600 (1073)
T 3gjx_A 521 TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH 600 (1073)
T ss_dssp HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777766433 3345555667888887765432 256778888888889999999999999999999877764
Q ss_pred H----------HHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH
Q 007918 508 I----------TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS 546 (585)
Q Consensus 508 ~----------~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~ 546 (585)
. +.+.++..+.....+=.+.-.....++++.++...++.
T Consensus 601 lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~ 649 (1073)
T 3gjx_A 601 FVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQ 649 (1073)
T ss_dssp GTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred HhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCc
Confidence 3 33445554555555556677778899999998887754
No 76
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.31 E-value=3.6e-13 Score=118.80 Aligned_cols=186 Identities=22% Similarity=0.218 Sum_probs=126.4
Q ss_pred HHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC--hhHHHHHHHHHHHHhhccCchhhhhhhHHHHH
Q 007918 168 YTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEPQDCVAHILPVIV 245 (585)
Q Consensus 168 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 245 (585)
+..+++|+++.||..++..+. . ..+..+.+| +.||..++..+ +. +.+.
T Consensus 55 ~~~ll~d~~~~VR~~AA~~l~-------~--------~~l~~L~~D~~~~VR~~aA~~L-------~~--------~~L~ 104 (244)
T 1lrv_A 55 AVQYLADPFWERRAIAVRYSP-------V--------EALTPLIRDSDEVVRRAVAYRL-------PR--------EQLS 104 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTSC-------G--------GGGGGGTTCSSHHHHHHHHTTS-------CS--------GGGG
T ss_pred HHHHhcCCCHHHHHHHHHhCC-------H--------HHHHHHccCcCHHHHHHHHHHC-------CH--------HHHH
Confidence 346678999999998888642 1 125566677 56888888653 21 2356
Q ss_pred HhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHh
Q 007918 246 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL 325 (585)
Q Consensus 246 ~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~ 325 (585)
.+.+|+++.||..++..+ +. +.+..+++|+++.||..+...+ +. +.+..+
T Consensus 105 ~ll~D~d~~VR~~aA~~l-------~~--------~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l 154 (244)
T 1lrv_A 105 ALMFDEDREVRITVADRL-------PL--------EQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRF 154 (244)
T ss_dssp GTTTCSCHHHHHHHHHHS-------CT--------GGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGT
T ss_pred HHHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHH
Confidence 778888999998887743 11 1244667888889998887632 21 244567
Q ss_pred ccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhc
Q 007918 326 SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE 405 (585)
Q Consensus 326 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~ 405 (585)
++|++|.||..++..+ +. +.+..+++|+++.||..++..+. . +.+..+++
T Consensus 155 ~~D~d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l~-------~--------~~L~~Ll~ 204 (244)
T 1lrv_A 155 MRDEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRLR-------G--------DDLLELLH 204 (244)
T ss_dssp TTCSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHCC-------G--------GGGGGGGG
T ss_pred HcCCCHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhCC-------H--------HHHHHHHc
Confidence 8888999998888751 11 33456778888889888887641 1 23455688
Q ss_pred CCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHH
Q 007918 406 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLK 459 (585)
Q Consensus 406 ~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 459 (585)
|++|.||..++..++ .+.+..+ .|++|.||.++...||
T Consensus 205 D~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 205 DPDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp CSSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred CCCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 888998888887753 1445455 8888888888876654
No 77
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.30 E-value=2.5e-10 Score=100.73 Aligned_cols=184 Identities=14% Similarity=0.065 Sum_probs=102.4
Q ss_pred hHHHHHHhccCCcHHHHHHHHHHHHhhchhhCH---HHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhch---hH
Q 007918 318 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DL 391 (585)
Q Consensus 318 i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~ 391 (585)
..+.+..++.++++.+|..++.++..++..-.. .......+|.+..++.++++.+|..|+.+|+.++..-.. ..
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 344445555555555555555555555422110 011223455555666665666666666666665532111 11
Q ss_pred HhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhC---hhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCH-
Q 007918 392 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP- 467 (585)
Q Consensus 392 ~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~- 467 (585)
.....+|.+..++.++++.+|..++.++..++.... ........+|.+..++.+++..+|..|+.+|..++.....
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~ 172 (210)
T 4db6_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (210)
T ss_dssp HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHH
Confidence 112355666666666666666666666666653211 0112234677788888888888888888888888753111
Q ss_pred --HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhh
Q 007918 468 --EWAMQHITPQVLEMINNPHYLYRMTILRAISLLA 501 (585)
Q Consensus 468 --~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~ 501 (585)
.......++.+.+++.+++..+|..|..++..++
T Consensus 173 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 173 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 1123456677777777777777777777776665
No 78
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.28 E-value=3.6e-13 Score=118.78 Aligned_cols=185 Identities=20% Similarity=0.272 Sum_probs=95.1
Q ss_pred HhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHh
Q 007918 246 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL 325 (585)
Q Consensus 246 ~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~ 325 (585)
.++.|+++.||..++..+ + ...+..+++|+++.||..+...+ +. +.+..+
T Consensus 57 ~ll~d~~~~VR~~AA~~l-------~--------~~~l~~L~~D~~~~VR~~aA~~L-------~~--------~~L~~l 106 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS-------P--------VEALTPLIRDSDEVVRRAVAYRL-------PR--------EQLSAL 106 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS-------C--------GGGGGGGTTCSSHHHHHHHHTTS-------CS--------GGGGGT
T ss_pred HHhcCCCHHHHHHHHHhC-------C--------HHHHHHHccCcCHHHHHHHHHHC-------CH--------HHHHHH
Confidence 445666666666666532 1 11234556666666666666542 11 234555
Q ss_pred ccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhc
Q 007918 326 SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE 405 (585)
Q Consensus 326 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~ 405 (585)
++|+++.||..++..+ +. +.+..+++|+++.||..++..+. . +.+..+.+
T Consensus 107 l~D~d~~VR~~aA~~l-------~~--------~~L~~L~~D~d~~VR~~aA~~l~-------~--------~~l~~l~~ 156 (244)
T 1lrv_A 107 MFDEDREVRITVADRL-------PL--------EQLEQMAADRDYLVRAYVVQRIP-------P--------GRLFRFMR 156 (244)
T ss_dssp TTCSCHHHHHHHHHHS-------CT--------GGGGGGTTCSSHHHHHHHHHHSC-------G--------GGGGGTTT
T ss_pred HcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCHHHHHHHHHhcC-------H--------HHHHHHHc
Confidence 6666666666666532 10 12334456666666666665321 1 11224556
Q ss_pred CCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCc
Q 007918 406 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP 485 (585)
Q Consensus 406 ~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~ 485 (585)
|++|.||..++..+ +. +.+..++.|++|.||..++..+ + .+.+..++.|+
T Consensus 157 D~d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l-------~--------~~~L~~Ll~D~ 206 (244)
T 1lrv_A 157 DEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRL-------R--------GDDLLELLHDP 206 (244)
T ss_dssp CSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHC-------C--------GGGGGGGGGCS
T ss_pred CCCHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhC-------C--------HHHHHHHHcCC
Confidence 66666666665541 11 2333455666666666665542 1 12344455666
Q ss_pred chHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHH
Q 007918 486 HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVL 536 (585)
Q Consensus 486 ~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l 536 (585)
+|.||..++..++ .+.+..+ +|+++.||..+...|
T Consensus 207 d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 207 DWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp SHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred CHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 6666666665532 1333334 566666666555443
No 79
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=99.28 E-value=1.4e-07 Score=101.35 Aligned_cols=488 Identities=8% Similarity=0.036 Sum_probs=277.8
Q ss_pred cHHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhcccccccccCCchHHHHHHHHHHhccccc----cCCcc---
Q 007918 10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGVE--- 82 (585)
Q Consensus 10 ~i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~l~~~----~~~~~--- 82 (585)
.+..++..+.+++...|..|-+.|..+-. . ...+.....++. .+.++++|.-++..|...+.. ++..+
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~--s-p~aw~~~~~iL~--~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~ 103 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKE--H-PDAWTRVDTILE--FSQNMNTKYYGLQILENVIKTRWKILPRNQCEG 103 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSC--C-SCHHHHHTCC-----CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHc--C-chHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHH
Confidence 47788888999999999999987765432 1 223433444443 235789999888888765542 22111
Q ss_pred hHHhchHHHhhhhhc-----hhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCC--
Q 007918 83 HAHVLLPPLETLCTV-----EETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS-- 155 (585)
Q Consensus 83 ~~~~l~~~l~~l~~~-----~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~-- 155 (585)
....++..+.....+ .++.++.....++..++...-++. ++.+++-+..+... ++..+.....++..+.+.
T Consensus 104 LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~ 181 (1073)
T 3gjx_A 104 IKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-WPTFISDIVGASRT-SESLCQNNMVILKLLSEEVF 181 (1073)
T ss_dssp HHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-ccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHH
Confidence 234455555544333 257788888899999888654432 44444444444432 122333333333333221
Q ss_pred ------CChH-----------HHHHHHHHHHhhc-CCCchHHHHHHHHhHHHHHhhhcccch-HHHHHHHH-HHhccChh
Q 007918 156 ------APDI-----------LKTELRSIYTQLC-QDDMPMVRRSAASNLGKFAATVEPAHL-KTDIMSIF-EDLTQDDS 215 (585)
Q Consensus 156 ------~~~~-----------~~~~l~~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~l~~~l-~~l~~d~~ 215 (585)
.+.. ....+.+++...+ +..++.+...+.++++.+.+-+....+ .+.+++.+ ..++.++.
T Consensus 182 d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~~~~ 261 (1073)
T 3gjx_A 182 DFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLNVPM 261 (1073)
T ss_dssp TSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSSSHH
T ss_pred hcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcCChH
Confidence 1111 1134455555444 345678888899999999887654322 34466665 56777788
Q ss_pred HHHHHHHHHHHHhhccCchhhhhhh---H----HHHHHhc-------------cCCChHHHHHHHHHHHHHHHHhCC---
Q 007918 216 VRLLAVEGCAALGKLLEPQDCVAHI---L----PVIVNFS-------------QDKSWRVRYMVANQLYELCEAVGP--- 272 (585)
Q Consensus 216 vr~~a~~~l~~l~~~~~~~~~~~~~---~----~~l~~~~-------------~d~~~~vR~~~~~~l~~l~~~~~~--- 272 (585)
.|..|++++..++..-.+ .+.+.+ + ..+..++ .+.+...-...++.+..+++....
T Consensus 262 ~r~aA~dcL~eIv~k~~~-~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe 340 (1073)
T 3gjx_A 262 FRNVSLKCLTEIAGVSVS-QYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLE 340 (1073)
T ss_dssp HHHHHHHHHHHHHHSCSG-GGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998875221 122222 1 1111221 122223333344444444433211
Q ss_pred -c-ccccc---hHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHH---------------------------HHHHhhHH
Q 007918 273 -E-PTRMD---LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---------------------------LAIQHILP 320 (585)
Q Consensus 273 -~-~~~~~---l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~---------------------------~~~~~i~~ 320 (585)
. ..... .+.++..+..-++.++-+.++..|..+...+-.+ .+...+..
T Consensus 341 ~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~ 420 (1073)
T 3gjx_A 341 KRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRL 420 (1073)
T ss_dssp HCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHH
Confidence 1 11111 2333455556678899999999988876643111 01111222
Q ss_pred HHHHhcc---------------------CCcH-HHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcC--CChHHHHHH
Q 007918 321 CVKELSS---------------------DSSQ-HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD--EFPDVRLNI 376 (585)
Q Consensus 321 ~l~~~~~---------------------d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a 376 (585)
.+..-+. |.+. ..+...-.++..+. .++.+.....+.+.+.+.+.. .++..++++
T Consensus 421 vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~ 499 (1073)
T 3gjx_A 421 LMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTL 499 (1073)
T ss_dssp HHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHH
T ss_pred HHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHH
Confidence 2211111 1111 12222223333332 344455566666766665543 468999999
Q ss_pred HHHhHHhhhhhchh---HHhhhHHHHHHHHhcCC-----ChHHHHHHHHHhHHHHHhhC--hhhHHHHHHHHHHHHccCC
Q 007918 377 ISKLDQVNQVIGID---LLSQSLLPAIVELAEDR-----HWRVRLAIIEYIPLLASQLG--VGFFDDKLGALCMQWLQDK 446 (585)
Q Consensus 377 ~~~l~~l~~~~~~~---~~~~~ll~~l~~~~~~~-----~~~~r~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~ 446 (585)
+.+++.++..+.++ .+...+++.+..+.+.+ ...++...+..++...+.+. .+ +.+.++..++..+.+.
T Consensus 500 ~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~-~L~~vl~~L~~~m~~~ 578 (1073)
T 3gjx_A 500 CWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWK-FLKTVVNKLFEFMHET 578 (1073)
T ss_dssp HHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH-HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHH-HHHHHHHHHHHHHhcC
Confidence 99999998777642 44566777777766544 23466666677877665542 33 3344666777888999
Q ss_pred chHHHHHHHHHHHHHHHHhCHHH----------HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChH
Q 007918 447 VYSIRDAAANNLKRLAEEFGPEW----------AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 507 (585)
Q Consensus 447 ~~~vr~~a~~~l~~l~~~~~~~~----------~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~ 507 (585)
+..|+.+|+.++..++...+..+ +.+.++..+.....+-...-.....++++.++...+.+
T Consensus 579 ~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~ 649 (1073)
T 3gjx_A 579 HDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQ 649 (1073)
T ss_dssp STTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999998765543 22233333333344445667778888999998887764
No 80
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.23 E-value=1.4e-08 Score=81.18 Aligned_cols=214 Identities=16% Similarity=0.187 Sum_probs=135.0
Q ss_pred HhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHh-hcCCChHHHHHHHHHhHHhhhhhchhHHhh
Q 007918 316 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL-LKDEFPDVRLNIISKLDQVNQVIGIDLLSQ 394 (585)
Q Consensus 316 ~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 394 (585)
+.++..+..++.|.-|.||..++..+..+++..+. .+ +.++.-+..+ -+++.-..-+..+.++|.++.. .++.. .
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e-l~-epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i-~Pe~v-~ 106 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-LY-EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-KPELV-K 106 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG-GH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-CHHHH-H
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH-HH-HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh-CHHHH-H
Confidence 45666777778888888888888888888776652 11 1222222222 2344445556666777776643 22222 4
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhh
Q 007918 395 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI 474 (585)
Q Consensus 395 ~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 474 (585)
.++|.+..-..-.++..|.....+++.++...+ .....+..-+..++.+++..=|.+|++.++.+..+ +.. +...+
T Consensus 107 ~vVp~lfanyrigd~kikIn~~yaLeeIaranP--~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen-~~~-yv~Pf 182 (253)
T 2db0_A 107 SMIPVLFANYRIGDEKTKINVSYALEEIAKANP--MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SFK-YVNPF 182 (253)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT-THH-HHGGG
T ss_pred hhHHHHHHHHhcCCccceecHHHHHHHHHHhCh--HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc-Ccc-ccCcc
Confidence 566776665555577777777777777776532 12334555566677788877777777777766432 222 34567
Q ss_pred HHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHH
Q 007918 475 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 540 (585)
Q Consensus 475 l~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~ 540 (585)
+|.+..++.|.+.-+|..+++++++++..-+. ...+....+.-++|.+..|...+-..++.+.
T Consensus 183 LprL~aLL~D~deiVRaSaVEtL~~lA~~npk---lRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 183 LPRIINLLHDGDEIVRASAVEALVHLATLNDK---LRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 78888888888888888888888888763322 2344444455567777777777777777664
No 81
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.21 E-value=3.4e-08 Score=79.00 Aligned_cols=218 Identities=17% Similarity=0.145 Sum_probs=166.4
Q ss_pred HHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHH-hcCCChHHHHHHHHHhHHHHHhhChhhH
Q 007918 353 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGFF 431 (585)
Q Consensus 353 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~-~~~~~~~~r~~~~~~l~~l~~~~~~~~~ 431 (585)
+...++.-+..+|.|.-+.|+++|+..+..+....+. ..+.++..+..+ -+++.-..-+.....++.++.. .++.
T Consensus 29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e--l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i-~Pe~- 104 (253)
T 2db0_A 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED--LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-KPEL- 104 (253)
T ss_dssp HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG--GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-CHHH-
T ss_pred hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH--HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh-CHHH-
Confidence 3455677788889999999999999999999876543 113344444444 3566666667777888887764 3433
Q ss_pred HHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHh
Q 007918 432 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCS 511 (585)
Q Consensus 432 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~ 511 (585)
...++|.+..-..=.++..|.....+|+.++...+. ....+...+..++++++..-|.+++.+++.++.+... +..
T Consensus 105 v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~--l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~--yv~ 180 (253)
T 2db0_A 105 VKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM--LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFK--YVN 180 (253)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHH--HHG
T ss_pred HHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCcc--ccC
Confidence 345788888877777889999999999999887433 3566777888899999999999999999998874322 678
Q ss_pred cHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHh
Q 007918 512 RLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 581 (585)
Q Consensus 512 ~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~~ 581 (585)
.++|.+..++.|.+.-||..+..+|++++..-+. +...+...+.+ ++|+...|......+++.+.-+
T Consensus 181 PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npk--lRkii~~kl~e-~~D~S~lv~~~V~egL~rl~l~ 247 (253)
T 2db0_A 181 PFLPRIINLLHDGDEIVRASAVEALVHLATLNDK--LRKVVIKRLEE-LNDTSSLVNKTVKEGISRLLLL 247 (253)
T ss_dssp GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH--HHHHHHHHHHH-CCCSCHHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH--HHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999876432 44444444444 5899999999999999887643
No 82
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.21 E-value=8.3e-08 Score=106.39 Aligned_cols=505 Identities=10% Similarity=0.040 Sum_probs=279.5
Q ss_pred cHHHHHHHhcCh--hHHHHHHHhhhHHHHHHhhChhhhhhhcccccccccCCchHHHHHHHHHHhccccc----cCCcch
Q 007918 10 PIAVLIDELKND--DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGVEH 83 (585)
Q Consensus 10 ~i~~l~~~l~~~--~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~l~~~----~~~~~~ 83 (585)
.+..++..+.++ |...|..|-..|.++...- + .+..+...+. ..+.++++|..++..|.+.+.. ++ ++.
T Consensus 12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p--~-~~~~~~~~L~-~~s~~~~vR~~A~~~Lk~~I~~~W~~l~-~e~ 86 (1204)
T 3a6p_A 12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC--P-ICVPCGLRLA-EKTQVAIVRHFGLQILEHVVKFRWNGMS-RLE 86 (1204)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC--T-THHHHHHHHT-STTSCHHHHHHHHHHHHHHHHHSGGGSC-HHH
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc--h-HHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHHhcccCC-HHH
Confidence 356666666666 7778999998887764432 1 1222222222 2345789999988888765432 22 222
Q ss_pred H----HhchHHHhhhhh---chhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCC-
Q 007918 84 A----HVLLPPLETLCT---VEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPS- 155 (585)
Q Consensus 84 ~----~~l~~~l~~l~~---~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~- 155 (585)
. ..++..+..... +..+.||.....++..+++.--+ .-++.+++.+.++.+.. ...+..+..++..+.+.
T Consensus 87 k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~~-~~~~e~~L~iL~~L~Eev 164 (1204)
T 3a6p_A 87 KVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQG-ETQTELVMFILLRLAEDV 164 (1204)
T ss_dssp HHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHH
Confidence 2 233333322211 14689999999999999887544 33566777776666542 33455555555554321
Q ss_pred -----CChHHH-----------HHHHHHHHhhcCC-------------------CchHHHHHHHHhHHHHHhhhcccchH
Q 007918 156 -----APDILK-----------TELRSIYTQLCQD-------------------DMPMVRRSAASNLGKFAATVEPAHLK 200 (585)
Q Consensus 156 -----~~~~~~-----------~~l~~~l~~l~~d-------------------~~~~vr~~a~~~l~~l~~~~~~~~~~ 200 (585)
.....+ ..+++.+..++++ ++..++..+.+++..+....+.....
T Consensus 165 ~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~ 244 (1204)
T 3a6p_A 165 VTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHIT 244 (1204)
T ss_dssp HTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHH
Confidence 111111 2444554444432 23446666777776655544322221
Q ss_pred ---HHHHHHHHHhccChhHHHHHHHHHHHHhhccCc-hh---hhhhh----HHHHHHhc--------cCCChHHHHHHHH
Q 007918 201 ---TDIMSIFEDLTQDDSVRLLAVEGCAALGKLLEP-QD---CVAHI----LPVIVNFS--------QDKSWRVRYMVAN 261 (585)
Q Consensus 201 ---~~l~~~l~~l~~d~~vr~~a~~~l~~l~~~~~~-~~---~~~~~----~~~l~~~~--------~d~~~~vR~~~~~ 261 (585)
..+++.+..+..++.+|..|++++..++....+ +. ....+ +..+.... .+.+..+++..++
T Consensus 245 ~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ 324 (1204)
T 3a6p_A 245 AENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQ 324 (1204)
T ss_dssp TTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHH
Confidence 247777777777788999999999999986532 21 11211 11122221 2234566667776
Q ss_pred HHHHHHHHhC----------CcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhC--H-H---HHHHhhHHHHHH-
Q 007918 262 QLYELCEAVG----------PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--P-E---LAIQHILPCVKE- 324 (585)
Q Consensus 262 ~l~~l~~~~~----------~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~--~-~---~~~~~i~~~l~~- 324 (585)
.+..++..+- .......+++.+..++.+++..|...++..+..+.+... . + .+...+++.+..
T Consensus 325 ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~ 404 (1204)
T 3a6p_A 325 VLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTN 404 (1204)
T ss_dssp HHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHH
Confidence 6666653221 111223678888989989888899999998888776532 1 1 123344444411
Q ss_pred --hcc-----------------CCc-------HHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCC----------
Q 007918 325 --LSS-----------------DSS-------QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE---------- 368 (585)
Q Consensus 325 --~~~-----------------d~~-------~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~---------- 368 (585)
-.. |.+ +..|......+..++...+ ....+.+.+.+...+.+.
T Consensus 405 l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p-~~~l~~v~~~l~~~l~~~l~~~~~~~~~ 483 (1204)
T 3a6p_A 405 LVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDP-KTSFQMAGEWLKYQLSTFLDAGSVNSCS 483 (1204)
T ss_dssp HSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHTCC----------
T ss_pred HHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHhhhhccccccccc
Confidence 110 000 2456666666666665443 334455566665544431
Q ss_pred -------------Ch--HHHHHHHHHhHHhhhhh---c-hhHHhhhHHHHHHHHh---cCCChHHHHHHHHHhHHHHHhh
Q 007918 369 -------------FP--DVRLNIISKLDQVNQVI---G-IDLLSQSLLPAIVELA---EDRHWRVRLAIIEYIPLLASQL 426 (585)
Q Consensus 369 -------------~~--~vr~~a~~~l~~l~~~~---~-~~~~~~~ll~~l~~~~---~~~~~~~r~~~~~~l~~l~~~~ 426 (585)
++ ....+....+..+...+ . .+.....+.|.+...+ ...++.+|...+.+++.+...+
T Consensus 484 ~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~ 563 (1204)
T 3a6p_A 484 AVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFV 563 (1204)
T ss_dssp -------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGG
T ss_pred ccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHH
Confidence 11 11233333333333322 1 0111112445555532 3457889999999998877765
Q ss_pred C-hhhHHHHHHHHHHHHccC------------CchHHHHHHHHHHHHHHHHhCHHH--HHhhhHHHHHhhhcCcc---hH
Q 007918 427 G-VGFFDDKLGALCMQWLQD------------KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPH---YL 488 (585)
Q Consensus 427 ~-~~~~~~~l~~~l~~~l~d------------~~~~vr~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~~~~---~~ 488 (585)
. ...+.+.++..++..+.+ .+.+||.+|+.++..++...+... +.+.+...+...+.... ..
T Consensus 564 ~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~ 643 (1204)
T 3a6p_A 564 TYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQM 643 (1204)
T ss_dssp GTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHH
T ss_pred hcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHH
Confidence 4 122344456666666555 456899999999999998776542 23455555555554332 55
Q ss_pred HHHHHHHHHHHhhhhcChHH----HHhcHHHHHHhhcC
Q 007918 489 YRMTILRAISLLAPVMGSEI----TCSRLLPVVINASK 522 (585)
Q Consensus 489 ~R~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~l~ 522 (585)
-+....+++..++..+++.. +.+.+++.+.....
T Consensus 644 e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~ 681 (1204)
T 3a6p_A 644 EKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWL 681 (1204)
T ss_dssp HHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 56667777777765544332 34555555554444
No 83
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.20 E-value=9.9e-09 Score=107.77 Aligned_cols=256 Identities=14% Similarity=0.197 Sum_probs=198.8
Q ss_pred hhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccc----cchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHH
Q 007918 239 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR----MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA 314 (585)
Q Consensus 239 ~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~----~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~ 314 (585)
.+...+.+...++... ..++..+..++...+..... -.++|.++..+.|+...||.+|..+...+...+++...
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~ 131 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI 131 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 4666677777776544 78888888888666542211 14678889999999999999999999999999998876
Q ss_pred HHhhHHHHHHhccCC-cHHHHHHHHHHHHhhchhhCHH--HHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhH
Q 007918 315 IQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 391 (585)
Q Consensus 315 ~~~i~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 391 (585)
..++|.+...+.+. .|..+..++..+..+++..+.. ..++.++|.+...+.|..++|..+|..++..++..+++.+
T Consensus 132 -~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d 210 (986)
T 2iw3_A 132 -KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD 210 (986)
T ss_dssp -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT
T ss_pred -HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc
Confidence 77888888877655 6999999999999998766432 3478899999999999999999999999999999999888
Q ss_pred HhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhh--C--hhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCH
Q 007918 392 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL--G--VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP 467 (585)
Q Consensus 392 ~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~--~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 467 (585)
+ +..+|.|.+.+.+++. .-++++.++... . ......-+.|++.+.+.++...++..++-.+.+|++...+
T Consensus 211 ~-~~~~~~~~~~~~~p~~-----~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~ 284 (986)
T 2iw3_A 211 I-ERFIPSLIQCIADPTE-----VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED 284 (986)
T ss_dssp T-GGGHHHHHHHHHCTTH-----HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC
T ss_pred h-hhhHHHHHHHhcChhh-----hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCC
Confidence 7 5689999999988853 233444433211 0 1223456889999999999999999999999999986654
Q ss_pred H----HHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhhhh
Q 007918 468 E----WAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPV 503 (585)
Q Consensus 468 ~----~~~~~ll~~l~~~l~-~~~~~~R~~a~~~l~~l~~~ 503 (585)
. .|.+.++|.+.+... -.++.+|..+-.++..+...
T Consensus 285 ~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 285 PQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 3 366788888877653 35688899888888877543
No 84
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=99.18 E-value=2.5e-10 Score=105.24 Aligned_cols=181 Identities=17% Similarity=0.165 Sum_probs=138.7
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHHhhChhhHH-------HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHH---
Q 007918 400 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD-------DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--- 469 (585)
Q Consensus 400 l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~-------~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--- 469 (585)
+.+-+.+++|..|..+++.+..+.......... ..+.+.+-..+.|.+..|...++.++..++..++...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 557789999999999999988877653322111 1235667778899999999999999999988665431
Q ss_pred -----HHhhhHHHHHh-hhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh
Q 007918 470 -----AMQHITPQVLE-MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 543 (585)
Q Consensus 470 -----~~~~ll~~l~~-~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~ 543 (585)
....++|.++. .+.++...+|..+..++..++...+.. ..++..+...+++.+|.+|..++.++..++..+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 23567888876 478999999999999998887655432 456677888999999999999999999998876
Q ss_pred chH-----HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 007918 544 DQS-----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 583 (585)
Q Consensus 544 ~~~-----~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~~l~ 583 (585)
|.. .....+++.+..++.|++++||..|..++..+++.++
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 643 3445677778888999999999999999999988764
No 85
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.18 E-value=3e-09 Score=94.04 Aligned_cols=178 Identities=15% Similarity=0.151 Sum_probs=117.2
Q ss_pred HHHHhcCCChHHHHHHHHHhHHHHHhhChhhHH--HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHH------HHH
Q 007918 400 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE------WAM 471 (585)
Q Consensus 400 l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------~~~ 471 (585)
+...+-+++|..|..+++.+...........+. +-+++.+.-.+.|.+..|-..++.++..+...++.. ...
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea 130 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV 130 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 344555667777777777777655432221111 112222222334778888888888777776655432 113
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhh
Q 007918 472 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKT 551 (585)
Q Consensus 472 ~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~ 551 (585)
..++|.++.-+.|+...+|..+-..+..+...+++ ..+.+.+.+.++++++.+|..++..++.+....|.+. ..
T Consensus 131 ~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~~ 204 (266)
T 2of3_A 131 SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP--LK 204 (266)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--GG
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--cc
Confidence 56778888888888888888888777777666555 4566667777777788888888888888877776652 33
Q ss_pred HH---HHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 007918 552 IR---PCLVELTEDPDVDVRFFATQAIQSIDHVMM 583 (585)
Q Consensus 552 ~~---~~l~~l~~D~~~~Vr~~a~~al~~l~~~l~ 583 (585)
.+ |.+-.+++|+|.+||..|..++..+++..+
T Consensus 205 ~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 205 SLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp GGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 55 777777888888888888888877776543
No 86
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.17 E-value=3.5e-09 Score=100.07 Aligned_cols=212 Identities=11% Similarity=0.005 Sum_probs=149.2
Q ss_pred ChHHHHHHHHHhHHhhhhhc-hh-HH--hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhCh---h-hHHHHHHHHHH
Q 007918 369 FPDVRLNIISKLDQVNQVIG-ID-LL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---G-FFDDKLGALCM 440 (585)
Q Consensus 369 ~~~vr~~a~~~l~~l~~~~~-~~-~~--~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~---~-~~~~~l~~~l~ 440 (585)
++.++..|+.+|..++..-. .. .+ ....+|.|..++.+++..++..++.++..++..-+. . ......+|.+.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 35788888888888874322 11 12 134588888888888888888888888888653111 1 11223577777
Q ss_pred HH-ccCCchHHHHHHHHHHHHHHHHh---CHHHH-HhhhHHHHHhhhcCcch----HHHHHHHHHHHHhhhh--cChHH-
Q 007918 441 QW-LQDKVYSIRDAAANNLKRLAEEF---GPEWA-MQHITPQVLEMINNPHY----LYRMTILRAISLLAPV--MGSEI- 508 (585)
Q Consensus 441 ~~-l~d~~~~vr~~a~~~l~~l~~~~---~~~~~-~~~ll~~l~~~l~~~~~----~~R~~a~~~l~~l~~~--~~~~~- 508 (585)
.+ +...+.+++..|+.+|..++... ..... ....+|.+..++.+++. .++..++.++.+++.. .+.+.
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 256 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 75 46677889999999998887521 11222 35688889888876543 5888899999888752 12211
Q ss_pred ---HHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH---HHHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007918 509 ---TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 509 ---~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~ 580 (585)
.....+|.|+.++.+.+..++..++.+|..+....... ....-.+|.|..++.+.+..+|..|++++..|..
T Consensus 257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 23457899999999999999999999999997432211 2334578999999999999999999999998865
No 87
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.16 E-value=8.6e-09 Score=97.36 Aligned_cols=216 Identities=12% Similarity=0.057 Sum_probs=153.7
Q ss_pred cHHHHHHHHHHHHhhchhhC-H-HHH--HHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhch---hH-HhhhHHHHHH
Q 007918 330 SQHVRSALASVIMGMAPLLG-K-DAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DL-LSQSLLPAIV 401 (585)
Q Consensus 330 ~~~vr~~a~~~l~~l~~~~~-~-~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~-~~~~ll~~l~ 401 (585)
++.+|..++.+|.+++..-. . ..+ ..-.+|.+..++.+.+++++..|+.+|..++..-.. .. .....+|.|.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 46788888888888874322 1 112 134578888888888889999999998888753111 11 1234578888
Q ss_pred HH-hcCCChHHHHHHHHHhHHHHHhh-C--hhhH-HHHHHHHHHHHccCCch----HHHHHHHHHHHHHHHH--hCHHH-
Q 007918 402 EL-AEDRHWRVRLAIIEYIPLLASQL-G--VGFF-DDKLGALCMQWLQDKVY----SIRDAAANNLKRLAEE--FGPEW- 469 (585)
Q Consensus 402 ~~-~~~~~~~~r~~~~~~l~~l~~~~-~--~~~~-~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~l~~~--~~~~~- 469 (585)
.+ ..+.+..++..++.++..++... + .... ....+|.+..++.+... +++..|+.+|..++.. .+++.
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~ 256 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR 256 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence 85 56677888888888888877522 1 1111 23467888888876543 5999999999998863 12221
Q ss_pred ---HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcCh---HHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh
Q 007918 470 ---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 543 (585)
Q Consensus 470 ---~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~ 543 (585)
.....+|.++.++.+++..++..|+.++.+++..... .......+|.|..++.++++.+|..++.+|..+....
T Consensus 257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 2345789999999999999999999999999842111 1124567899999999999999999999999998764
Q ss_pred ch
Q 007918 544 DQ 545 (585)
Q Consensus 544 ~~ 545 (585)
+.
T Consensus 337 ~~ 338 (354)
T 3nmw_A 337 PA 338 (354)
T ss_dssp CG
T ss_pred HH
Confidence 43
No 88
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=99.15 E-value=7.1e-09 Score=86.92 Aligned_cols=223 Identities=12% Similarity=0.090 Sum_probs=174.0
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhch---hHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhC--hhh
Q 007918 356 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGF 430 (585)
Q Consensus 356 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~--~~~ 430 (585)
..+..+..++.|.++.++..++.++..+.+..+. ....+.++|.+..++.++|.++-..|+.++..+....+ ++.
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 3566778888999999999999999998887421 12336788999999999999999999999999987664 333
Q ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHH
Q 007918 431 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 510 (585)
Q Consensus 431 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~ 510 (585)
...+...+.+.+.+++.-++..|+..++.+ +... ..+.+...+..++.+++..++.+++.++.+++...+.....
T Consensus 113 -y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~---~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~ 187 (265)
T 3b2a_A 113 -FLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLE---DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL 187 (265)
T ss_dssp -HHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSC---CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG
T ss_pred -HHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cccc---chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH
Confidence 345788888899999999999999999988 2211 23567888888888899999999999999999877766567
Q ss_pred hcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchH---HHHhhHHHHHHHhc-CCCCccHHHHHHHHHHHHHHhhc
Q 007918 511 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELT-EDPDVDVRFFATQAIQSIDHVMM 583 (585)
Q Consensus 511 ~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---~~~~~~~~~l~~l~-~D~~~~Vr~~a~~al~~l~~~l~ 583 (585)
+.+...+-.+++.+++.++.-++.++..+...--.+ .-...+...+.++. ...-|.+|..|....+.+...++
T Consensus 188 ~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~~~le~~~~ 264 (265)
T 3b2a_A 188 TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKVSDLIDSVIS 264 (265)
T ss_dssp GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhhc
Confidence 778888888899999999999999999987652222 22234555566665 67788999999998888877654
No 89
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=99.13 E-value=3.9e-09 Score=93.36 Aligned_cols=180 Identities=14% Similarity=0.159 Sum_probs=133.8
Q ss_pred HHhccCChHHHHHHHHHHHHHHHHhhCHHHH--HHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHH------HHHH
Q 007918 284 VRLLRDNEAEVRIAAAGKVTKFCRILNPELA--IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD------ATIE 355 (585)
Q Consensus 284 ~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~------~~~~ 355 (585)
...+-+.++.-+.++++.|.......+.+.+ .+.+++.+.-.+.|+|..|-..+++.+..+...++.. ....
T Consensus 52 ~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~ 131 (266)
T 2of3_A 52 MSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVS 131 (266)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 3444455677777777777665543221111 1123443333345788888888888888876554321 2246
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHH
Q 007918 356 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL 435 (585)
Q Consensus 356 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l 435 (585)
.++|.+...+.|....||..+-..+..+....++. .+.+.+.+.++++||++|..++..+..+.+..|... ...
T Consensus 132 ~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~----~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~~~ 205 (266)
T 2of3_A 132 AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL----KMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP--LKS 205 (266)
T ss_dssp HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH----HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--GGG
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--ccc
Confidence 78899999999999999999999998888776653 466777778899999999999999999999998763 335
Q ss_pred H---HHHHHHccCCchHHHHHHHHHHHHHHHHhCHHH
Q 007918 436 G---ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 469 (585)
Q Consensus 436 ~---~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 469 (585)
+ |.+..++.|++.+||.+|++++..+....|+..
T Consensus 206 l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v 242 (266)
T 2of3_A 206 LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM 242 (266)
T ss_dssp GCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred ccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 6 889999999999999999999999998888764
No 90
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.11 E-value=8.8e-10 Score=102.56 Aligned_cols=282 Identities=10% Similarity=0.070 Sum_probs=140.2
Q ss_pred chHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhH
Q 007918 278 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL 357 (585)
Q Consensus 278 ~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l 357 (585)
.+++.+.+++..++...|+...-.+..+++. ..+. --+...+.+-++++++.+|..|++.++.+.. ....+.+
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~--iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----~~m~~~l 140 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDV--IIVTSSLTKDMTGKEDSYRGPAVRALCQITD----STMLQAI 140 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCG--GGGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----TTTHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHH--HHHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----HHHHHHH
Confidence 3555556677777777777776666666554 2221 1344555566677888888888888877753 2345667
Q ss_pred HHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHH
Q 007918 358 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 437 (585)
Q Consensus 358 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~ 437 (585)
.+.+.+.+.|.++.||++|+-+...+.... ++. .+.+++.+.+++.|.++.+...++..+..+.+. +. ....++++
T Consensus 141 ~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~-pe~-v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~-~a~~kLv~ 216 (355)
T 3tjz_B 141 ERYMKQAIVDKVPSVSSSALVSSLHLLKCS-FDV-VKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DR-LAVSKMIS 216 (355)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTTTC-HHH-HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CH-HHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhccC-HHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-ch-HHHHHHHH
Confidence 777888888888888888887777666543 222 245777777788888887777777777666543 11 11222333
Q ss_pred HHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHH
Q 007918 438 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV 517 (585)
Q Consensus 438 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l 517 (585)
.+... .-.++......++.+..++..-. ....+.+++.+...+++.+..|-..|+.++..+.. .+.. ........+
T Consensus 217 ~l~~~-~l~~~~~q~~llr~l~~~~~~d~-~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~-~~~~a~~~L 292 (355)
T 3tjz_B 217 KFTRH-GLKSPFAYCMMIRVASRQLEDED-GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAK-ELAPAVSVL 292 (355)
T ss_dssp HHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC-------------CCCTH
T ss_pred HHhcC-CCcChHHHHHHHHHHHHhccccc-hhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHH-HHHHHHHHH
Confidence 33221 11134444444555544443210 11345677888888888888898888888877654 2222 223334556
Q ss_pred HhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHH
Q 007918 518 INASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQ 576 (585)
Q Consensus 518 ~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~ 576 (585)
..+++++++++|..+++.+..+....+ ...+..-..+..+++|+|..++..|..++-
T Consensus 293 ~~fLss~d~niryvaLr~L~~l~~~~P--~~v~~~n~~ie~li~d~n~sI~t~Aittll 349 (355)
T 3tjz_B 293 QLFCSSPKAALRYAAVRTLNKVAMKHP--SAVTACNLDLENLVTDANRSIATLAITTLL 349 (355)
T ss_dssp HHHHHSSSSSSHHHHHHCC----------------------------------------
T ss_pred HHHHcCCCchHHHHHHHHHHHHHHHCc--HHHHHHHHHHHHHccCCcHhHHHHHHHHhh
Confidence 666778899999999999999887643 233456677778899999999888776653
No 91
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.10 E-value=6.7e-09 Score=95.31 Aligned_cols=171 Identities=17% Similarity=0.139 Sum_probs=119.5
Q ss_pred HHHHHHHHhHHHHHhhCh--hhHHHHHHHHHHH-HccCCchHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhc-
Q 007918 411 VRLAIIEYIPLLASQLGV--GFFDDKLGALCMQ-WLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMIN- 483 (585)
Q Consensus 411 ~r~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~- 483 (585)
.|..++..|..+++.... .+.....+|.++. ++.+++..||..|+.+|+.++..... .......+|.++.++.
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~ 135 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR 135 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc
Confidence 455566666666553321 1222234677777 88888889999999999888753211 1233567888888887
Q ss_pred CcchHHHHHHHHHHHHhhhhcCh---HHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch---HHHHhhHHHHHH
Q 007918 484 NPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCLV 557 (585)
Q Consensus 484 ~~~~~~R~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~---~~~~~~~~~~l~ 557 (585)
+++..+|..|+.++++++....+ .+.....+|.|..+++++++.+|..++++++.+...... ......++|.|.
T Consensus 136 ~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv 215 (296)
T 1xqr_A 136 DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 215 (296)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHH
Confidence 45778889999999988764433 122346788888888888889999999999888765222 123445788888
Q ss_pred HhcCCCCccHHHHHHHHHHHHHHh
Q 007918 558 ELTEDPDVDVRFFATQAIQSIDHV 581 (585)
Q Consensus 558 ~l~~D~~~~Vr~~a~~al~~l~~~ 581 (585)
.++.+++..|+..|..+++.|.+.
T Consensus 216 ~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 216 ALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHcCCChhHHHHHHHHHHHHHhC
Confidence 888888889999988888887653
No 92
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.09 E-value=1.8e-08 Score=92.41 Aligned_cols=209 Identities=11% Similarity=0.044 Sum_probs=146.0
Q ss_pred HHHHHHHHHhHHhhhhhchh--HHhhhHHHHHHH-HhcCCChHHHHHHHHHhHHHHHhhC---hhhHHHHHHHHHHHHcc
Q 007918 371 DVRLNIISKLDQVNQVIGID--LLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQ 444 (585)
Q Consensus 371 ~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~-~~~~~~~~~r~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~ 444 (585)
+-|..|+..|..++...... ......+|.+.. ++.+++..+|..++++++.++..-. ...+....+|.+..++.
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 45777777777777654321 122345788888 8999999999999999998875321 12223346788888887
Q ss_pred -CCchHHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcCh---HHHHhcHHHHH
Q 007918 445 -DKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVV 517 (585)
Q Consensus 445 -d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~---~~~~~~i~~~l 517 (585)
+++..+|..|+.+|+.++....+ .+.....+|.+..++.+++..+|..++.++.+++..... ......++|.|
T Consensus 135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~L 214 (296)
T 1xqr_A 135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 214 (296)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHH
Confidence 45789999999999999864332 223356889999999999999999999999999865221 12356788999
Q ss_pred HhhcCCCCchHHHHHHHHHHHHHhhhchH---------HHHhhHHHHHHHhc-CCCCccHHHHHHHHHHHHH
Q 007918 518 INASKDRVPNIKFNVAKVLQSLIPIVDQS---------MVEKTIRPCLVELT-EDPDVDVRFFATQAIQSID 579 (585)
Q Consensus 518 ~~~l~d~~~~vR~~~~~~l~~l~~~~~~~---------~~~~~~~~~l~~l~-~D~~~~Vr~~a~~al~~l~ 579 (585)
..++.++++.||..++.+++.+....... .+...+-+.+..+. .+...++...+.+.++.+.
T Consensus 215 v~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 215 VALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999998662211 12223334444444 2334677777777766553
No 93
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=99.08 E-value=2.9e-07 Score=102.14 Aligned_cols=475 Identities=10% Similarity=-0.020 Sum_probs=265.9
Q ss_pred CchHHHHHHHHHHhccccccCCcchHHhchHHHhhhh-hchhhHHHHHHHHHHHHHHhh----cChhh---HHhhHHHHH
Q 007918 59 DDDEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLC-TVEETCVRDKAVESLCRIGSQ----MRESD---LVDWYIPLV 130 (585)
Q Consensus 59 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l~-~~~~~~vr~~a~~~l~~l~~~----~~~~~---~~~~l~~~l 130 (585)
.+.++|+.+-+.|..+-. .++....+ ...+. .+.++.+|..|...|...+.. ++++. +.+.++..+
T Consensus 25 ~~~~~r~~Ae~~L~~~~~---~p~~~~~~---~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l 98 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKE---KCPICVPC---GLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELI 98 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHH---HCTTHHHH---HHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHh---CchHHHHH---HHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 366788989888888744 22222222 22233 566889999999999997753 34432 345566665
Q ss_pred HHhhc---CcCccchhhHHhhhHhhcCCCChHHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcc-c----c----
Q 007918 131 KRLAA---GEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP-A----H---- 198 (585)
Q Consensus 131 ~~l~~---~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~----~---- 198 (585)
..... +....+|...+.++..++..--+..+.++++.+.++++. ++..+..+...|..+.+.... + .
T Consensus 99 ~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~ 177 (1204)
T 3a6p_A 99 ANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRD 177 (1204)
T ss_dssp HHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHH
T ss_pred HhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHH
Confidence 44321 134677888888888876654334566777777777655 456677888888888764211 0 0
Q ss_pred -------hHHHHHHHHHHhccC---------------------hhHHHHHHHHHHHHhhccCchhhhh---hhHHHHHHh
Q 007918 199 -------LKTDIMSIFEDLTQD---------------------DSVRLLAVEGCAALGKLLEPQDCVA---HILPVIVNF 247 (585)
Q Consensus 199 -------~~~~l~~~l~~l~~d---------------------~~vr~~a~~~l~~l~~~~~~~~~~~---~~~~~l~~~ 247 (585)
..+.+++.+...+.+ ..++..+++++.......+.....+ .+++.+..+
T Consensus 178 l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~ 257 (1204)
T 3a6p_A 178 IQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLL 257 (1204)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHH
Confidence 011333333332221 2356667777766666555433222 377777777
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhCCccc----ccch----HHHHHHhc--------cCChHHHHHHHHHHHHHHHHhhC-
Q 007918 248 SQDKSWRVRYMVANQLYELCEAVGPEPT----RMDL----VPAYVRLL--------RDNEAEVRIAAAGKVTKFCRILN- 310 (585)
Q Consensus 248 ~~d~~~~vR~~~~~~l~~l~~~~~~~~~----~~~l----~~~l~~ll--------~d~~~~vr~~a~~~l~~l~~~~~- 310 (585)
+.+ +.+|..|+++|..++..-.+... ...+ +..++... .|.+.++++..++.+..++..+.
T Consensus 258 l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~ 335 (1204)
T 3a6p_A 258 LNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCA 335 (1204)
T ss_dssp GGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 765 56899999999998864322110 0111 11233332 22345667777666666553211
Q ss_pred ---------HHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhh--CH-H---HHHHhHHHHHHH---hhcCC---C
Q 007918 311 ---------PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL--GK-D---ATIEQLLPIFLS---LLKDE---F 369 (585)
Q Consensus 311 ---------~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~--~~-~---~~~~~l~~~l~~---~l~d~---~ 369 (585)
.......+++.+..+..+++..+-..++.....+.+.. +. + .+...+++.+.. .++-+ +
T Consensus 336 l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~ 415 (1204)
T 3a6p_A 336 LLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTD 415 (1204)
T ss_dssp HHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCS
T ss_pred HHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccC
Confidence 11113567888888888888888777776666554432 11 1 234444455421 11100 0
Q ss_pred ---------------------hHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhc-----------------------
Q 007918 370 ---------------------PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE----------------------- 405 (585)
Q Consensus 370 ---------------------~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~----------------------- 405 (585)
.+.|+.....+..++...+...+ +.+.+.+...+.
T Consensus 416 ~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l-~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 494 (1204)
T 3a6p_A 416 SPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSF-QMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCS 494 (1204)
T ss_dssp STHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHTCC-----------------CCSC
T ss_pred CcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHhhhhcccccccccccccccccccC
Confidence 13455556666655544433222 344455543322
Q ss_pred --CCChHHHHHHHHHhHHHHHhh---C-hhh----HHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHH-HHHhhh
Q 007918 406 --DRHWRVRLAIIEYIPLLASQL---G-VGF----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-WAMQHI 474 (585)
Q Consensus 406 --~~~~~~r~~~~~~l~~l~~~~---~-~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l 474 (585)
++.|....+....++.+.+.+ . .+. +.+.+++.+..+ ...++.+|..++.+++.+...+... .+...+
T Consensus 495 ~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~-~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~v 573 (1204)
T 3a6p_A 495 VFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNF-DTKDPLILSCVLTNVSALFPFVTYRPEFLPQV 573 (1204)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHC-CCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhC-CCCChHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 233555566555566555443 1 111 122333333222 3356779999999999888765421 134455
Q ss_pred HHHHHhhhcC------------cchHHHHHHHHHHHHhhhhcChHH--HHhcHHHHHHhhcCCCC---chHHHHHHHHHH
Q 007918 475 TPQVLEMINN------------PHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRV---PNIKFNVAKVLQ 537 (585)
Q Consensus 475 l~~l~~~l~~------------~~~~~R~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~~l~d~~---~~vR~~~~~~l~ 537 (585)
++.++..+.+ .+..+|..|..++..++..++... +.+.+...+...+.... ..=+.....+++
T Consensus 574 L~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~ 653 (1204)
T 3a6p_A 574 FSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALV 653 (1204)
T ss_dssp HHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHH
Confidence 6666655544 245799999999999998776542 34555555555554322 444666777777
Q ss_pred HHHhhhc
Q 007918 538 SLIPIVD 544 (585)
Q Consensus 538 ~l~~~~~ 544 (585)
.+...++
T Consensus 654 ~ia~~~~ 660 (1204)
T 3a6p_A 654 LISNQFK 660 (1204)
T ss_dssp HHHGGGC
T ss_pred HHhccCC
Confidence 7754433
No 94
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=99.05 E-value=1.1e-09 Score=103.54 Aligned_cols=255 Identities=12% Similarity=0.077 Sum_probs=164.4
Q ss_pred hHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHH
Q 007918 279 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 358 (585)
Q Consensus 279 l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~ 358 (585)
+...+..-+-|+.|++|..|+-+|..+.+..|...- .. -..+.+--+|-.++-++.+++...+..
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAG--R~------~~~N~DLAvRLLCVLALDRFGDYVSDq------- 239 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGD--IQ------IRVDSKLFSKIYEILVTDKFNDFVDDR------- 239 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC------CC------CCCCTTHHHHHHHHHHHBCCBBCSSSS-------
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCc--ee------ccccHHHHHHHHHHHHhccccccccCe-------
Confidence 555556666677788888888888877776554211 00 011223344444444554554433311
Q ss_pred HHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHH
Q 007918 359 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL 438 (585)
Q Consensus 359 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~ 438 (585)
.-..||+.++++|+.+ ..++.+ + .++..+......+.|++|.+++-.+..+.+.+.. .+.+.+.
T Consensus 240 ---------VVAPVRETaAQtLGaL-~hLp~e-~--~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~a 303 (800)
T 3oc3_A 240 ---------TVAPVRDAAAYLLSRI-YPLIGP-N--DIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRK 303 (800)
T ss_dssp ---------CBCHHHHHHHHHHHHH-TTTSCS-C--CHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHH
T ss_pred ---------eeeehHHHHHHHHHHH-HhCChh-H--HHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHH
Confidence 1256889999999888 777655 1 3444444455778899999999888877333332 4678899
Q ss_pred HHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcC--cchHHHHHHHHHHHHhhhhcChHHHHhcHHHH
Q 007918 439 CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSEITCSRLLPV 516 (585)
Q Consensus 439 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~--~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~ 516 (585)
+...+.|.+..||..|+.+|..++ .++ ..+.++..+.+.+.+ .-...-...+..++.+...-......+.++|.
T Consensus 304 VL~GL~D~DDDVRAVAAetLiPIA---~p~-~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPR 379 (800)
T 3oc3_A 304 LVSLLSSPDEDIKLLSAELLCHFP---ITD-SLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKD 379 (800)
T ss_dssp HHHHTTCSSHHHHHHHHHHHTTSC---CSS-THHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGG
T ss_pred HHhhcCCcccHHHHHHHHHhhhhc---chh-hHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHH
Confidence 999999999999999999998887 222 234455555555433 22233344455555555422211122478899
Q ss_pred HHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHH-HhcCCCCccHHHHHHHHHH
Q 007918 517 VINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLV-ELTEDPDVDVRFFATQAIQ 576 (585)
Q Consensus 517 l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~-~l~~D~~~~Vr~~a~~al~ 576 (585)
+...+..+.++||.++++++..+. ...++..+. +++-+++.+|+..+.+++.
T Consensus 380 L~PFLRHtITSVR~AVL~TL~tfL--------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 380 IFPCFTSPVPEVRTSILNMVKNLS--------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp TGGGGTCSSHHHHHHHHHHTTTCC--------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHhhhcCCcHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999999999999998876 123444444 4777899999999999986
No 95
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=99.05 E-value=4.1e-09 Score=98.08 Aligned_cols=284 Identities=12% Similarity=0.032 Sum_probs=132.1
Q ss_pred hhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhh
Q 007918 239 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI 318 (585)
Q Consensus 239 ~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i 318 (585)
.+++.+.++++.++...|+.+.-.+..+++. .++ .. -....+.+-++++++-+|-.|+++++.+.. +.+.+.+
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e-~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----~~m~~~l 140 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AED-VI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD----STMLQAI 140 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSC-GG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----TTTHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHH-HH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----HHHHHHH
Confidence 4555566677777777777777776665544 111 11 345666666677777777777777777643 2234566
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHH
Q 007918 319 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 398 (585)
Q Consensus 319 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~ 398 (585)
.+.+.+.+.|+++.||.+|+-+...+....+ + ..+.+++.+..++.|.++.|..+|+..+..+...- ... ...+++
T Consensus 141 ~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p-e-~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-~~a-~~kLv~ 216 (355)
T 3tjz_B 141 ERYMKQAIVDKVPSVSSSALVSSLHLLKCSF-D-VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND-RLA-VSKMIS 216 (355)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH-H-HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC-HHH-HHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhccCH-H-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc-hHH-HHHHHH
Confidence 6777777777777777777777666654332 2 23456666777777777777777777777766431 111 122333
Q ss_pred HHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHH
Q 007918 399 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 478 (585)
Q Consensus 399 ~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l 478 (585)
.+... .-.++......+..+..+...- .......+.+.+..+++..+..|...|++++..+... +.. ......+.+
T Consensus 217 ~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~-~~~-~~~~a~~~L 292 (355)
T 3tjz_B 217 KFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGC-SAK-ELAPAVSVL 292 (355)
T ss_dssp HHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC-------------CCCTH
T ss_pred HHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC-CHH-HHHHHHHHH
Confidence 22210 0112222222333332222110 0123456777788888888888888888888776442 222 122334555
Q ss_pred HhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHH
Q 007918 479 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL 539 (585)
Q Consensus 479 ~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l 539 (585)
..++++++..+|-.|+..+..+....+. .....-..+.++++|++..++.-|+-+|...
T Consensus 293 ~~fLss~d~niryvaLr~L~~l~~~~P~--~v~~~n~~ie~li~d~n~sI~t~Aittllkt 351 (355)
T 3tjz_B 293 QLFCSSPKAALRYAAVRTLNKVAMKHPS--AVTACNLDLENLVTDANRSIATLAITTLLKT 351 (355)
T ss_dssp HHHHHSSSSSSHHHHHHCC------------------------------------------
T ss_pred HHHHcCCCchHHHHHHHHHHHHHHHCcH--HHHHHHHHHHHHccCCcHhHHHHHHHHhhhc
Confidence 5667778888899999888888775443 3344556778888888888887776666543
No 96
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=99.03 E-value=1.3e-08 Score=93.56 Aligned_cols=183 Identities=11% Similarity=0.062 Sum_probs=131.9
Q ss_pred HHHhccCChHHHHHHHHHHHHHHHHhhCHHHH-------HHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHH----
Q 007918 283 YVRLLRDNEAEVRIAAAGKVTKFCRILNPELA-------IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---- 351 (585)
Q Consensus 283 l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~-------~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---- 351 (585)
+.+.+.+.+|..|..+++.+..+......... ...+.+.+...+.|.|..|...++.++..++..++..
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 45677788888888888887776654322111 1234556677788999999999999888887665421
Q ss_pred ----HHHHhHHHHHHH-hhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhh
Q 007918 352 ----ATIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 426 (585)
Q Consensus 352 ----~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~ 426 (585)
.....++|.+.. .+.|..+.+|..+..++..++...+.. ..+++.+...+++++|++|..++.++..+...+
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence 234556676654 589999999999999888877654321 235566677889999999999999999999887
Q ss_pred Chhh-----HHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHH
Q 007918 427 GVGF-----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 468 (585)
Q Consensus 427 ~~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 468 (585)
|... ..+.+++.+..++.|.+.+||.+|..+++.+...+|..
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 7543 23446677888899999999999999999999988864
No 97
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=98.93 E-value=2.9e-08 Score=94.23 Aligned_cols=252 Identities=13% Similarity=0.008 Sum_probs=174.3
Q ss_pred HHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhcccccccccCCchHHHHHHHHHHhccccccCCcchHHhchHH
Q 007918 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP 90 (585)
Q Consensus 11 i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 90 (585)
-..|...|-++.|++|=.|+-+|.++.+.-|....+. ...+.+--+|....-+|..|+.|+++...
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-------~~~N~DLAvRLLCVLALDRFGDYVSDqVV------- 241 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-------IRVDSKLFSKIYEILVTDKFNDFVDDRTV------- 241 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-------CCCCTTHHHHHHHHHHHBCCBBCSSSSCB-------
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-------ccccHHHHHHHHHHHHhccccccccCeee-------
Confidence 4567788999999999999999999988776432221 22223667888888999999998885332
Q ss_pred HhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChHHHHHHHHHHHh
Q 007918 91 LETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQ 170 (585)
Q Consensus 91 l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~ 170 (585)
.-||+.++++|+.+ ..++++ ...+..++ .....+.|.+|..+...+-.+...+.. .+.+.+.+..
T Consensus 242 ---------APVRETaAQtLGaL-~hLp~e--~~IL~qLV-~~l~~~~WEVRHGGLLGLKYL~DLL~~--Ld~Vv~aVL~ 306 (800)
T 3oc3_A 242 ---------APVRDAAAYLLSRI-YPLIGP--NDIIEQLV-GFLDSGDWQVQFSGLIALGYLKEFVED--KDGLCRKLVS 306 (800)
T ss_dssp ---------CHHHHHHHHHHHHH-TTTSCS--CCHHHHHT-TGGGCSCHHHHHHHHHHHHHTGGGCCC--HHHHHHHHHH
T ss_pred ---------eehHHHHHHHHHHH-HhCChh--HHHHHHHH-hhcCCCCeeehhhhHHHHHHHHHHHHH--HHHHHHHHHh
Confidence 24799999999999 888876 33333333 344666799999888777766333332 7888999999
Q ss_pred hcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhcc---C-hhHHHHHHHHHHHHhhccCchhhhhhhHHHHHH
Q 007918 171 LCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQ---D-DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN 246 (585)
Q Consensus 171 l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~---d-~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ 246 (585)
.++|.+..||..|+.+|..++ .+ ...+.++..+...+. | ...-......|.++...-......+.++|.+..
T Consensus 307 GL~D~DDDVRAVAAetLiPIA---~p-~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~P 382 (800)
T 3oc3_A 307 LLSSPDEDIKLLSAELLCHFP---IT-DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFP 382 (800)
T ss_dssp HTTCSSHHHHHHHHHHHTTSC---CS-STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGG
T ss_pred hcCCcccHHHHHHHHHhhhhc---ch-hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHHHHh
Confidence 999999999999999999888 22 233444443333333 3 223344455555555533222223478888888
Q ss_pred hccCCChHHHHHHHHHHHHHHHHhCCcccccchHH-HHHHhccCChHHHHHHHHHHHH
Q 007918 247 FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVP-AYVRLLRDNEAEVRIAAAGKVT 303 (585)
Q Consensus 247 ~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~-~l~~ll~d~~~~vr~~a~~~l~ 303 (585)
++..+-..||.++++++..+. ...++. .+.+++-+++.+|+..+.+.+.
T Consensus 383 FLRHtITSVR~AVL~TL~tfL--------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 383 CFTSPVPEVRTSILNMVKNLS--------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GGTCSSHHHHHHHHHHTTTCC--------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred hhcCCcHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999999999987654 123443 3445566778899999988885
No 98
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.93 E-value=1.9e-07 Score=78.39 Aligned_cols=181 Identities=12% Similarity=0.092 Sum_probs=144.6
Q ss_pred hHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHH---HHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhhc--hhHH
Q 007918 318 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLL 392 (585)
Q Consensus 318 i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~ 392 (585)
.+..+..++.|.++.++..+..++..+.+..++. ...+.++|.+..++.+.+..|-..|+.++..+....+ ++.+
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 4556677778888888888888888887765432 2456778888888888888888889999988887654 4555
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHh
Q 007918 393 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQ 472 (585)
Q Consensus 393 ~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 472 (585)
..+...+.++.++++.-.+..+++.++.+ ......+.+...+..++.+.+.+|+.+++.++..+...-++....+
T Consensus 114 -~Kl~~aL~dlik~~~~il~~eaae~Lgkl----kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~ 188 (265)
T 3b2a_A 114 -LKAAKTLVSLLESPDDMMRIETIDVLSKL----QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLT 188 (265)
T ss_dssp -HHHHHHHHHHTTSCCHHHHHHHHHHHHHC----CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGG
T ss_pred -HHHHHHHHHHhcCCCchHHHHHHHHhCcC----CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHH
Confidence 56888899999999999999999999887 2223346688888889999999999999999999987665544566
Q ss_pred hhHHHHHhhhcCcchHHHHHHHHHHHHhhhh
Q 007918 473 HITPQVLEMINNPHYLYRMTILRAISLLAPV 503 (585)
Q Consensus 473 ~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~ 503 (585)
.++..+..++++.+..++.-|+.++..+...
T Consensus 189 ~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 189 LILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 7888888899999999999999999888764
No 99
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.86 E-value=3e-10 Score=91.27 Aligned_cols=121 Identities=17% Similarity=0.168 Sum_probs=86.1
Q ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhc
Q 007918 433 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSR 512 (585)
Q Consensus 433 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~ 512 (585)
+.-.+.+...+.|+++.+|..|+.+|+.+ |.. . ++.+...+.|+++.+|..++.+++.+.. ..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~----~~~----~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~ 73 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRM----GDE----A-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ER 73 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSC----SST----T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HH
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHh----Cch----H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HH
Confidence 34466677788888888888888888754 221 2 4778888888888999999988887753 34
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007918 513 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 578 (585)
Q Consensus 513 i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l 578 (585)
.++.+...++|+++.||..++++|+.+.. ...++.|..++.|+++.||..|..+++.|
T Consensus 74 a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 74 AVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 56777777888899999999999988742 34677788877888999999988887653
No 100
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=98.81 E-value=1.1e-07 Score=80.85 Aligned_cols=139 Identities=19% Similarity=0.219 Sum_probs=109.0
Q ss_pred HHHHHHHHHHhccC--hhHHHHHHHHHHHHhhccCchhhhhhhHHHHHH-hccCCChHHHHHHHHHHHHHHHHhCCcccc
Q 007918 200 KTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTR 276 (585)
Q Consensus 200 ~~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~-~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~ 276 (585)
.+++.++...+.++ ++||..|+..++.. . ....+++.+.. +..|++|.||..++..++.++...+.
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~p---- 137 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEY---- 137 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCT----
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCH----
Confidence 46778888888888 88999999988776 2 13568888887 88899999999999999999974443
Q ss_pred cchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhC
Q 007918 277 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG 349 (585)
Q Consensus 277 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~ 349 (585)
+..++.+.....|++..||+.|.+..-..+.......-.+.++|.+..+..|++..||.+...+|..+++.-+
T Consensus 138 e~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 138 KKALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp TTTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 3478888999999999999999888643332211111125678889999999999999999999999887544
No 101
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.78 E-value=1.3e-09 Score=87.40 Aligned_cols=115 Identities=21% Similarity=0.232 Sum_probs=46.8
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHH
Q 007918 280 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP 359 (585)
Q Consensus 280 ~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~ 359 (585)
.+.+..+++|+++.+|..++..|+.+.. . . ++.+...++|+++.||..++.+++.+.. +..++
T Consensus 14 ~~~l~~~L~~~~~~vR~~A~~~L~~~~~----~----~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~a~~ 76 (131)
T 1te4_A 14 LVPRGSHMADENKWVRRDVSTALSRMGD----E----A-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVE 76 (131)
T ss_dssp -------CCSSCCCSSSSCCSSTTSCSS----T----T-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCc----h----H-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HHHHH
Confidence 3344444444445555544444443311 0 0 2334444445555555555555444431 11233
Q ss_pred HHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHh
Q 007918 360 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 419 (585)
Q Consensus 360 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l 419 (585)
.+...++|+++.||..++.+|+.+.. +..+|.+...++|+++.+|..++.++
T Consensus 77 ~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 77 PLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYL 128 (131)
T ss_dssp HHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34444444445555555555544331 12334444444444444444444443
No 102
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=98.74 E-value=4.2e-07 Score=77.37 Aligned_cols=139 Identities=17% Similarity=0.134 Sum_probs=109.3
Q ss_pred hhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHH-hccCChHHHHHHHHHHHHHHHHhhCHHHHH
Q 007918 237 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR-LLRDNEAEVRIAAAGKVTKFCRILNPELAI 315 (585)
Q Consensus 237 ~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~-ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 315 (585)
.+.+++....+.+++...||..++..|+.. . ....+++.+.. +..|++|.||+.+...++.++...+++
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 466788888899999999999999877765 2 12467888887 778888999999999999988755553
Q ss_pred HhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhh
Q 007918 316 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 386 (585)
Q Consensus 316 ~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 386 (585)
..++.+...+.|++..||+.++..+..++.........+.++|.+..+..|++..||++...+|..+++.
T Consensus 139 -~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 139 -KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp -TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 3567788889999999999999887665543222233466889899999999999999999999998865
No 103
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.73 E-value=1.1e-06 Score=93.94 Aligned_cols=385 Identities=10% Similarity=0.010 Sum_probs=216.0
Q ss_pred CCCChHHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcc------cchHHHHHHHHHHhcc-C--hhHHHHHHHHH
Q 007918 154 PSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEP------AHLKTDIMSIFEDLTQ-D--DSVRLLAVEGC 224 (585)
Q Consensus 154 ~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~l~~-d--~~vr~~a~~~l 224 (585)
.+.++...+.+.+.+..+..|++..-.+.+++.++.+...... +..++.+.|++.+.+. + ++....-..++
T Consensus 499 rn~~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i 578 (997)
T 1vsy_5 499 SGFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLA 578 (997)
T ss_dssp TTTCCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 5666667788899999999999888899999999988754321 3577889999999887 4 44444455555
Q ss_pred HHHhhccCchhhhhhhHHHHHHh-----ccCCChHHHHHHHHHHHHHHHHhCCcc-cccchHHHHHHhccCChHHHHHHH
Q 007918 225 AALGKLLEPQDCVAHILPVIVNF-----SQDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRLLRDNEAEVRIAA 298 (585)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~~l~~~-----~~d~~~~vR~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~ll~d~~~~vr~~a 298 (585)
..+.....+.. ...++..+..+ .++.+.-....-+..+..+....+-.. ....++..+. +..+...||+..
T Consensus 579 ~~~~~~~DprR-~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~I 655 (997)
T 1vsy_5 579 WWLPAVVDLRR-SKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAV 655 (997)
T ss_dssp HHHHHHSCGGG-CHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHH
T ss_pred HHHhcCCChhh-hHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHH
Confidence 55555444332 22333333211 011111111111223333322222211 1223343333 566668899988
Q ss_pred HHHHHHHHHhhC----------------------------HHHHHHhhHHHHHHhc---c---C--C-----c--HHHHH
Q 007918 299 AGKVTKFCRILN----------------------------PELAIQHILPCVKELS---S---D--S-----S--QHVRS 335 (585)
Q Consensus 299 ~~~l~~l~~~~~----------------------------~~~~~~~i~~~l~~~~---~---d--~-----~--~~vr~ 335 (585)
...|..+....- +..+.+.+...+.++- . + + + ...-.
T Consensus 656 g~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~k 735 (997)
T 1vsy_5 656 AKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTS 735 (997)
T ss_dssp HHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHH
T ss_pred HHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHH
Confidence 888877665431 0111111111111110 0 0 1 1 11123
Q ss_pred HHHHHHHhhchhhCHH---HHHHh-HHHHHHHhhcCCCh-HHHHH-HHHHhHHhhhhhchhHHhhhHHHHHHHHhc-CCC
Q 007918 336 ALASVIMGMAPLLGKD---ATIEQ-LLPIFLSLLKDEFP-DVRLN-IISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRH 408 (585)
Q Consensus 336 ~a~~~l~~l~~~~~~~---~~~~~-l~~~l~~~l~d~~~-~vr~~-a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~-~~~ 408 (585)
+++.++.......... .+... ++|.+..+..+.+. ++... +...+..++...-.....+.++..+..... +++
T Consensus 736 Tvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~s 815 (997)
T 1vsy_5 736 TIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSS 815 (997)
T ss_dssp HHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCS
T ss_pred HHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCc
Confidence 3443443332221111 11222 55555555554433 44444 444455554333233233445555555555 679
Q ss_pred hHHHHHHHHHhHHHHHh----hChhhHHHHHHHHHHHHccCCc-hHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhc
Q 007918 409 WRVRLAIIEYIPLLASQ----LGVGFFDDKLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN 483 (585)
Q Consensus 409 ~~~r~~~~~~l~~l~~~----~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~ 483 (585)
| .|..++..+..+.=. ++.+. ...+...+..++.|+. .+||+.|..+|+.+....+.....+.++..+.+.+.
T Consensus 816 W-~R~~~L~~lq~~~f~n~f~l~~~~-~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~ 893 (997)
T 1vsy_5 816 N-QTKLQLAFIQHFLSAELLQLTEEE-KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLD 893 (997)
T ss_dssp S-SHHHHHHHHHHHHHHHTTTSCTTH-HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSST
T ss_pred H-HHHHHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9 999999987765421 12222 3567888999999999 999999999999998875231122344444444432
Q ss_pred C------------cchHHHHHHHHHHHHhhhhcChHH----HHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhc
Q 007918 484 N------------PHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 544 (585)
Q Consensus 484 ~------------~~~~~R~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~ 544 (585)
. .+...|.+|+-.|+.++..++.+. +.+.++..|.....|+.+ |+.++-++++..-.+..
T Consensus 894 ~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~ 969 (997)
T 1vsy_5 894 VNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRA 969 (997)
T ss_dssp TTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTS
T ss_pred hcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccc
Confidence 2 123688999999999998766442 456666677777778655 99999999999876643
No 104
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=98.57 E-value=3.5e-05 Score=82.38 Aligned_cols=144 Identities=10% Similarity=-0.032 Sum_probs=99.4
Q ss_pred HHHHHHHHcc-CCchHHHHHHHHHHHHHHHH----hCHHHHHhhhHHHHHhhhcCcc-hHHHHHHHHHHHHhhhhcChHH
Q 007918 435 LGALCMQWLQ-DKVYSIRDAAANNLKRLAEE----FGPEWAMQHITPQVLEMINNPH-YLYRMTILRAISLLAPVMGSEI 508 (585)
Q Consensus 435 l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~----~~~~~~~~~ll~~l~~~l~~~~-~~~R~~a~~~l~~l~~~~~~~~ 508 (585)
++..+..... +++| +|.+++..+..+.-. ++.+ -...+...+..++.|+. ..||+.|..+|+.+..+.+...
T Consensus 802 ~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~-~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~ 879 (997)
T 1vsy_5 802 IVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEE-EKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQ 879 (997)
T ss_dssp HHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTT-HHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHH
T ss_pred HHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchh
Confidence 4444444444 6789 999999998777642 1222 23568888889999999 9999999999999997762321
Q ss_pred HHhcHHHHHHhhcCC------------CCchHHHHHHHHHHHHHhhhch----HHHHhhHHHHHHHhcCCCCccHHHHHH
Q 007918 509 TCSRLLPVVINASKD------------RVPNIKFNVAKVLQSLIPIVDQ----SMVEKTIRPCLVELTEDPDVDVRFFAT 572 (585)
Q Consensus 509 ~~~~i~~~l~~~l~d------------~~~~vR~~~~~~l~~l~~~~~~----~~~~~~~~~~l~~l~~D~~~~Vr~~a~ 572 (585)
....++..+.+.+.. +....|.+++-.|+.++..++- +...+.++..|.....|+.+ |+..+.
T Consensus 880 ~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk 958 (997)
T 1vsy_5 880 PLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAK 958 (997)
T ss_dssp HHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTH
T ss_pred hHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHH
Confidence 223344444444311 1124677888888888876542 45667777777777888665 999999
Q ss_pred HHHHHHHHh
Q 007918 573 QAIQSIDHV 581 (585)
Q Consensus 573 ~al~~l~~~ 581 (585)
++++.+-+.
T Consensus 959 ~tlseFkrT 967 (997)
T 1vsy_5 959 NTISEFKKV 967 (997)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999988764
No 105
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=98.07 E-value=0.0027 Score=60.16 Aligned_cols=255 Identities=14% Similarity=0.100 Sum_probs=107.2
Q ss_pred hHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC--hhHHHHHHHHHHHHhhccCchhhhhhhHHHHHHhccCCChH
Q 007918 177 PMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD--DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWR 254 (585)
Q Consensus 177 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~ 254 (585)
+..++-|++.+.++.+.++ ...+.-+.....++.| ..||..|+..++.++.. .....+..+|.++++.+++.
T Consensus 42 ~k~K~LaaQ~I~kffk~FP--~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~~ 115 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHFP--ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDSA 115 (507)
T ss_dssp HHHHHHHHHHHHHHGGGCG--GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHHHHHHHHhhCh--hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccchH
Confidence 4455555555555554442 2233333444444444 22555555555544433 23444555555555555554
Q ss_pred HHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHH----HHHHhhHHHHHHhccCCc
Q 007918 255 VRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKELSSDSS 330 (585)
Q Consensus 255 vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~~~~d~~ 330 (585)
.+..+-.+|..+.+. .+...+..++..+...+..+|..++..|..-...++.+ .....+...+...+.|-.
T Consensus 116 E~~~V~~sL~sllk~-----Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT 190 (507)
T 3u0r_A 116 EFNLVNNALLSIFKM-----DAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVT 190 (507)
T ss_dssp HHHHHHHHHHHHHHH-----CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHhc-----ChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhcccc
Confidence 444444444444432 11112222222222223456655555554443333322 111223333334444433
Q ss_pred HHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhh------cCCChHH----HHHHHHHhHHhhhhhchhHHhhhHHHHH
Q 007918 331 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL------KDEFPDV----RLNIISKLDQVNQVIGIDLLSQSLLPAI 400 (585)
Q Consensus 331 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l------~d~~~~v----r~~a~~~l~~l~~~~~~~~~~~~ll~~l 400 (585)
..-=..+...+..+ +.++...-.+.+++++.... .-.+++. ...+-.++.-++.......+...+...+
T Consensus 191 ~~EF~L~m~lL~~l-kl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kI 269 (507)
T 3u0r_A 191 GEEFVLFMKILSGL-KSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQV 269 (507)
T ss_dssp HHHHHHHHHHHHTS-GGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc-ccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhh
Confidence 22222222222221 11111111234444444431 1122222 2233334444444444333333333333
Q ss_pred HHHhcC-----CChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHc
Q 007918 401 VELAED-----RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 443 (585)
Q Consensus 401 ~~~~~~-----~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l 443 (585)
...+.+ +....+...+..+..++...|........++.+.+.+
T Consensus 270 lP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L 317 (507)
T 3u0r_A 270 LPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKL 317 (507)
T ss_dssp GGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHH
T ss_pred ccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHH
Confidence 333322 1223677888899999988884444455666665544
No 106
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.04 E-value=0.0024 Score=63.49 Aligned_cols=324 Identities=13% Similarity=0.126 Sum_probs=180.7
Q ss_pred HHHHHHHHH-hhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccC---hhHHHHHHHHHHHHhhccCchhh
Q 007918 161 KTELRSIYT-QLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQD---DSVRLLAVEGCAALGKLLEPQDC 236 (585)
Q Consensus 161 ~~~l~~~l~-~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d---~~vr~~a~~~l~~l~~~~~~~~~ 236 (585)
..+.++.+. .+.+..-.+-|+.|+..|..+.+.....-...-+.+++..+.+| .++-+.++++|-.+...-+.+..
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~ 98 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEV 98 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-----
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccc
Confidence 344444444 45555667888888888888877654332223344444444444 33444466666555432211110
Q ss_pred hhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHH---
Q 007918 237 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL--- 313 (585)
Q Consensus 237 ~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~--- 313 (585)
.. . +.......+.+.-..+.+ ..+-++.++.+++..+..+|..+++.|..++..-+...
T Consensus 99 -~~-------~---~~~~~~~~~~~~~d~f~~-------~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~ 160 (651)
T 3grl_A 99 -EE-------N---STRQSEDLGSQFTEIFIK-------QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQI 160 (651)
T ss_dssp --------------------CHHHHHHHHHHH-------STHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred -cc-------c---ccccchHHHHHHHHHHHc-------CCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 00 0 000000111111111111 24568889999999999999999999999987754421
Q ss_pred H--HHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCH---HHHHHhHHHHHHHhhcCCCh----HHHHHHHHHhHHhh
Q 007918 314 A--IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFP----DVRLNIISKLDQVN 384 (585)
Q Consensus 314 ~--~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~l~ 384 (585)
+ .+.-++.+..+++|+...+|..++..+..++..-.. -...+..++.+...+..+.. .|-.-++..+..+.
T Consensus 161 Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLL 240 (651)
T 3grl_A 161 ILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLL 240 (651)
T ss_dssp HHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHH
T ss_pred HHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHH
Confidence 1 124578888999999999999999999998764321 11234456666666655433 56666777777776
Q ss_pred hhhc-hhH-Hh-hhHHHHHHHHhcC----CChHHHH-----HHHHHhHHHHHhhCh---------hhHHHHHHHHHHHHc
Q 007918 385 QVIG-IDL-LS-QSLLPAIVELAED----RHWRVRL-----AIIEYIPLLASQLGV---------GFFDDKLGALCMQWL 443 (585)
Q Consensus 385 ~~~~-~~~-~~-~~ll~~l~~~~~~----~~~~~r~-----~~~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l 443 (585)
..-. .+. +. ...+|.+..+++. ..|.-+. .++..+..+...-++ ..+...+++.+.+++
T Consensus 241 r~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll 320 (651)
T 3grl_A 241 KNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTIL 320 (651)
T ss_dssp TTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred hcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHH
Confidence 5422 111 11 1234444455432 2353111 233334333322111 122234566677766
Q ss_pred cCC--chHHHHHHHHHHHHHHHHhCH--HHHH----------hhhHHHHHhhhcCc-chHHHHHHHHHHHHhhh
Q 007918 444 QDK--VYSIRDAAANNLKRLAEEFGP--EWAM----------QHITPQVLEMINNP-HYLYRMTILRAISLLAP 502 (585)
Q Consensus 444 ~d~--~~~vr~~a~~~l~~l~~~~~~--~~~~----------~~ll~~l~~~l~~~-~~~~R~~a~~~l~~l~~ 502 (585)
..+ ...+|..|+.+++.++..... +.+. ..++..+..++++. ...+|.+++.++..+..
T Consensus 321 ~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 321 MATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence 544 578999999999998864322 1121 22444445555554 58899999999988764
No 107
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.02 E-value=0.0061 Score=63.43 Aligned_cols=180 Identities=12% Similarity=0.025 Sum_probs=98.4
Q ss_pred hhcccccccccCCchHHHHHHHHHHhccccccCCcchH------HhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChh
Q 007918 47 KELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHA------HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120 (585)
Q Consensus 47 ~~l~~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~------~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~ 120 (585)
..++|++..+.+.+++.|..++.++..++. ++... ..+.+++..++.|++..||.+|..+|+.++..-+++
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~---~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQ---DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTT---SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHc---CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 357888877778888889999999988875 33321 234456777888999999999999999888766553
Q ss_pred h----HHhhHHHHHHHhhcCc-------------C-ccch-------hhHHhhhHhhcCCCChH----HHHHHHHHHHhh
Q 007918 121 D----LVDWYIPLVKRLAAGE-------------W-FTAR-------VSACGLFHIAYPSAPDI----LKTELRSIYTQL 171 (585)
Q Consensus 121 ~----~~~~l~~~l~~l~~~~-------------~-~~~r-------~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l 171 (585)
. +...+++.+..+.... . ...+ ..++.++..++..-+.. .....++.+...
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~ 190 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR 190 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence 2 1222444443332110 0 0001 11223333333222211 111233333333
Q ss_pred c---CCCchHHHHHHHHhHHHHHhhhcc------cchHHHHHHHHHHhccC-hhHHHHHHHHHHHHhh
Q 007918 172 C---QDDMPMVRRSAASNLGKFAATVEP------AHLKTDIMSIFEDLTQD-DSVRLLAVEGCAALGK 229 (585)
Q Consensus 172 ~---~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~l~~d-~~vr~~a~~~l~~l~~ 229 (585)
+ +.....++..++.+|..+...... +.....+...+..+.++ +..|..++..+..+..
T Consensus 191 L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 191 LISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVFT 258 (684)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHhh
Confidence 3 223467999999999888764311 00111233344444444 4456666666666643
No 108
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.01 E-value=0.022 Score=59.29 Aligned_cols=184 Identities=12% Similarity=0.129 Sum_probs=105.4
Q ss_pred HhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhH--H-hhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChHH-
Q 007918 85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDL--V-DWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDIL- 160 (585)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~--~-~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~- 160 (585)
..+.|+++. +.++++..|..|+.+|..++..-..... . ..+.+++..+..|++..+|..|+.++..++...+...
T Consensus 34 ~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 34 DKILPVLKD-LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HTTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 457888876 5789999999999999999864322222 2 3356677888899999999999999998876655432
Q ss_pred ----HHHHHHHHHhhcCCC--------------ch-------HHHHHHHHhHHHHHhhhcc---cchHHHHHHHH-HHhc
Q 007918 161 ----KTELRSIYTQLCQDD--------------MP-------MVRRSAASNLGKFAATVEP---AHLKTDIMSIF-EDLT 211 (585)
Q Consensus 161 ----~~~l~~~l~~l~~d~--------------~~-------~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l-~~l~ 211 (585)
...+++.+..++... .. .+-..++..|..++..-.. .......+|.+ ..+.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 233555555554211 01 1222344455554432111 00111122222 2222
Q ss_pred c-C---hhHHHHHHHHHHHHhhccCc------hhhhhhhHHHHHHhccCCChHHHHHHHHHHHHHHHHh
Q 007918 212 Q-D---DSVRLLAVEGCAALGKLLEP------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 270 (585)
Q Consensus 212 ~-d---~~vr~~a~~~l~~l~~~~~~------~~~~~~~~~~l~~~~~d~~~~vR~~~~~~l~~l~~~~ 270 (585)
. + .+++..++++|..+.+.-.+ +.....++..+..+.++.+.. |..++..+..+....
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~-~~la~giL~Ni~~~~ 260 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPR-AVMACGVLHNVFTSL 260 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTT-HHHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHH-HHHHHHHHHhHhhhh
Confidence 2 1 46899999999888764322 011123445555555554443 555666666665444
No 109
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.98 E-value=0.00051 Score=59.98 Aligned_cols=185 Identities=15% Similarity=0.077 Sum_probs=114.3
Q ss_pred HHHHHHHHhcCCCh--HHHHHHHHHhHHHHHhhC---hhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCH---
Q 007918 396 LLPAIVELAEDRHW--RVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--- 467 (585)
Q Consensus 396 ll~~l~~~~~~~~~--~~r~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--- 467 (585)
-+|.+.+++.++++ .++..++..+..++..-. ........+|.+..++.+++.+++..|+.+|..++.....
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 45666666666655 666666666665553211 1112223568888888888888888888888888652111
Q ss_pred HHHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhhhhcC-hHHHHhcHHHHHHhhcC----------------CCCchHH
Q 007918 468 EWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVINASK----------------DRVPNIK 529 (585)
Q Consensus 468 ~~~~~~ll~~l~~~l~-~~~~~~R~~a~~~l~~l~~~~~-~~~~~~~i~~~l~~~l~----------------d~~~~vR 529 (585)
.......+|.+++++. .++..++..++.++.++..... ...+...-+|.|..++. ..++.|+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~ 168 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIF 168 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHH
Confidence 1123557888888886 4678888888888888875332 22233445666666442 1256899
Q ss_pred HHHHHHHHHHHhhhch--HHHH--hhHHHHHHHhc------CCCCccHHHHHHHHHHHHHH
Q 007918 530 FNVAKVLQSLIPIVDQ--SMVE--KTIRPCLVELT------EDPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 530 ~~~~~~l~~l~~~~~~--~~~~--~~~~~~l~~l~------~D~~~~Vr~~a~~al~~l~~ 580 (585)
.++..+|..+...-.. ..+. .-+++.|..++ .+.+...+..+.-+|..+..
T Consensus 169 ~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 169 YNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 9999999998753211 1221 23555555542 34566778888888877654
No 110
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=97.93 E-value=0.016 Score=55.08 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=33.3
Q ss_pred hhcChHHHHhcHHHHHHhhcCCC-----CchHHHHHHHHHHHHHhhhchH----HHHhhHHHHHHHh
Q 007918 502 PVMGSEITCSRLLPVVINASKDR-----VPNIKFNVAKVLQSLIPIVDQS----MVEKTIRPCLVEL 559 (585)
Q Consensus 502 ~~~~~~~~~~~i~~~l~~~l~d~-----~~~vR~~~~~~l~~l~~~~~~~----~~~~~~~~~l~~l 559 (585)
.......+.+.+...++..+++- .++.|...++++..+....+.. ...+.+...|..+
T Consensus 254 ~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~y 320 (507)
T 3u0r_A 254 KNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEY 320 (507)
T ss_dssp TTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTT
T ss_pred cCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHH
Confidence 33333334444444444444432 2348999999999999888733 3344455555543
No 111
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.88 E-value=0.00021 Score=62.44 Aligned_cols=145 Identities=13% Similarity=0.058 Sum_probs=106.6
Q ss_pred HHHHHHHccCCch--HHHHHHHHHHHHHHHHhCH---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcCh-H--
Q 007918 436 GALCMQWLQDKVY--SIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-E-- 507 (585)
Q Consensus 436 ~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~-~-- 507 (585)
+|.+.+++.+++. .++..|+.++..++..... .......+|.++.++.+++..++..|+.++.+++..... .
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 6778888887777 8998899999988864322 123456789999999999999999999999999863211 1
Q ss_pred HHHhcHHHHHHhhcC-CCCchHHHHHHHHHHHHHhhhch-HHHHhhHHHHHHHhcC-------C---------CCccHHH
Q 007918 508 ITCSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQ-SMVEKTIRPCLVELTE-------D---------PDVDVRF 569 (585)
Q Consensus 508 ~~~~~i~~~l~~~l~-d~~~~vR~~~~~~l~~l~~~~~~-~~~~~~~~~~l~~l~~-------D---------~~~~Vr~ 569 (585)
......+|.|++++. .++..++..++.+|..+...-.. ..+.+.-+|.|..++. | .+.+|+.
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~ 169 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFY 169 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHH
Confidence 124567899999997 57899999999999998754322 2334445666665431 1 2668999
Q ss_pred HHHHHHHHHHH
Q 007918 570 FATQAIQSIDH 580 (585)
Q Consensus 570 ~a~~al~~l~~ 580 (585)
+|..++..+..
T Consensus 170 na~~~L~nLss 180 (233)
T 3tt9_A 170 NVTGCLRNMSS 180 (233)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999988753
No 112
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.82 E-value=0.015 Score=57.85 Aligned_cols=185 Identities=15% Similarity=0.115 Sum_probs=116.9
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHH-----HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHH
Q 007918 394 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD-----DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 468 (585)
Q Consensus 394 ~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~-----~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 468 (585)
+.-++.+..++++.+..+|..++..+..+...-+...-. +.-++.+..++.|+...+|..++..|..+.+....-
T Consensus 121 ~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~i 200 (651)
T 3grl_A 121 QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAI 200 (651)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHH
T ss_pred CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHH
Confidence 345788889999999999999999999998765432211 134677899999999999999999999998743221
Q ss_pred ---HHHhhhHHHHHhhhcCcch----HHHHHHHHHHHHhhhhc--ChHHHH-hcHHHHHHhhcCCCCc------hHHHH-
Q 007918 469 ---WAMQHITPQVLEMINNPHY----LYRMTILRAISLLAPVM--GSEITC-SRLLPVVINASKDRVP------NIKFN- 531 (585)
Q Consensus 469 ---~~~~~ll~~l~~~l~~~~~----~~R~~a~~~l~~l~~~~--~~~~~~-~~i~~~l~~~l~d~~~------~vR~~- 531 (585)
...+..++.+.+.+..... .+-+-++..+.++.+.- ....|. ...+|.+..+++.+.. +.-.+
T Consensus 201 QklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~ 280 (651)
T 3grl_A 201 QKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNL 280 (651)
T ss_dssp HHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHH
Confidence 1235667778777765443 67778888888888753 233343 3456666666653321 12233
Q ss_pred --HHHHHHHHHhhhch---H------HHHhhHHHHHHHhcCCC--CccHHHHHHHHHHHH
Q 007918 532 --VAKVLQSLIPIVDQ---S------MVEKTIRPCLVELTEDP--DVDVRFFATQAIQSI 578 (585)
Q Consensus 532 --~~~~l~~l~~~~~~---~------~~~~~~~~~l~~l~~D~--~~~Vr~~a~~al~~l 578 (585)
++.++..++...++ . .....+++.|.+++..+ ...||..|..+++.+
T Consensus 281 ~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~ 340 (651)
T 3grl_A 281 HLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEV 340 (651)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 23333333322111 1 22344667777754333 345777777766654
No 113
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=97.26 E-value=0.029 Score=61.23 Aligned_cols=273 Identities=9% Similarity=0.072 Sum_probs=149.8
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHhHHHHHhhhcccchHHHHHHHHHHhccChhHHHHHHHHHHHHhhccCchhhhhhhHH
Q 007918 163 ELRSIYTQLCQDDMPMVRRSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDSVRLLAVEGCAALGKLLEPQDCVAHILP 242 (585)
Q Consensus 163 ~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~d~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 242 (585)
.+...+.+++.++...+...+...+..+...+.. .-.+.+..++.++...+..|.-...++...+. .. .+.
T Consensus 289 ~~~e~lk~L~~~~~~~v~~~~~~~f~~Lv~~lR~-~~~e~L~~l~~~~~~~~~~r~~~lDal~~aGT----~~----a~~ 359 (1056)
T 1lsh_A 289 EIHTVLKHLVENNQLSVHEDAPAKFLRLTAFLRN-VDAGVLQSIWHKLHQQKDYRRWILDAVPAMAT----SE----ALL 359 (1056)
T ss_dssp HHHHHHHHHHHHCSSSCCTTHHHHHHHHHHHHTT-SCHHHHHHHHHHHTTSHHHHHHHHHHHHHHCS----HH----HHH
T ss_pred HHHHHHHHHHhccccccCcchHHHHHHHHHHHhc-CCHHHHHHHHHHHhccHHHHHHHHHHhHhcCC----HH----HHH
Confidence 3444444444333333333344444444443321 11233444454444344455544444444432 11 223
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCC----hHHHHHHHHHHHHHHHHhhCH------H
Q 007918 243 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN----EAEVRIAAAGKVTKFCRILNP------E 312 (585)
Q Consensus 243 ~l~~~~~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~----~~~vr~~a~~~l~~l~~~~~~------~ 312 (585)
.+.+.+.+...... .+++.+....... . -...++..+..+++++ ++.+|..++-+++.++..... .
T Consensus 360 ~i~~~i~~~~l~~~-ea~~~l~~~~~~~--~-Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~ 435 (1056)
T 1lsh_A 360 FLKRTLASEQLTSA-EATQIVASTLSNQ--Q-ATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD 435 (1056)
T ss_dssp HHHHHHHTTCSCHH-HHHHHHHHHHHTC--C-CCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG
T ss_pred HHHHHHHcCCCCHH-HHHHHHHHhhccC--C-CCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH
Confidence 33333333322211 1444554333221 1 1235677777777653 467899999999988765421 1
Q ss_pred HHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhc-------CCChHHHHHHHHHhHHhhh
Q 007918 313 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-------DEFPDVRLNIISKLDQVNQ 385 (585)
Q Consensus 313 ~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~l~~ 385 (585)
...+.+...+.+.+...+...+..++++||+++.- ..++.+..++. +....||..|+.+|..+..
T Consensus 436 ~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p--------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~ 507 (1056)
T 1lsh_A 436 ELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP--------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK 507 (1056)
T ss_dssp GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhh
Confidence 12244555555566667788889999999998742 33455555553 2245789999999999885
Q ss_pred hhchhHHhhhHHHHHHHHh--cCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHH
Q 007918 386 VIGIDLLSQSLLPAIVELA--EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 463 (585)
Q Consensus 386 ~~~~~~~~~~ll~~l~~~~--~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 463 (585)
..+ +.+-+.+.++. ...+..+|..|+..+-. ..++. ..+..+...+-.|++.+|+......+..+.+
T Consensus 508 ~~p-----~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~---t~P~~---~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 508 RDP-----RKVQEIVLPIFLNVAIKSELRIRSCIVFFE---SKPSV---ALVSMVAVRLRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp TCH-----HHHHHHHHHHHHCTTSCHHHHHHHHHHHHH---TCCCH---HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred hch-----HHHHHHHHHHhcCCCCChHHHHHHHHHHHH---HCcCH---HHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence 421 13445555555 34678899999887632 22222 2233344444567889999988888888876
Q ss_pred HhCH
Q 007918 464 EFGP 467 (585)
Q Consensus 464 ~~~~ 467 (585)
.-.+
T Consensus 577 s~~P 580 (1056)
T 1lsh_A 577 SSNP 580 (1056)
T ss_dssp CCSG
T ss_pred cCCc
Confidence 5433
No 114
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=97.20 E-value=0.15 Score=47.76 Aligned_cols=86 Identities=17% Similarity=0.167 Sum_probs=47.9
Q ss_pred hhHHHHHhhhcCc--chHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCC--------CchHHHHHHHHHHHHHhh
Q 007918 473 HITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR--------VPNIKFNVAKVLQSLIPI 542 (585)
Q Consensus 473 ~ll~~l~~~l~~~--~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~--------~~~vR~~~~~~l~~l~~~ 542 (585)
.++..+++.+.++ +...-.+.+.++..|++.-+. +...+++.+..+-... ...||.+.-..|..+..+
T Consensus 225 ~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~--~~~rIl~aL~~l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~ 302 (386)
T 3o2t_A 225 AALEQLLKFMVHPAISSINLTTALGSLANIARQRPM--FMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKH 302 (386)
T ss_dssp HHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGG--GHHHHHHHHHHHHHCC----CGGGHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHH--HHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444455544432 233345677777777764443 4567777666543211 233566666666666655
Q ss_pred hchHHHHhhHHHHHHHhc
Q 007918 543 VDQSMVEKTIRPCLVELT 560 (585)
Q Consensus 543 ~~~~~~~~~~~~~l~~l~ 560 (585)
-+...+..++...|..+.
T Consensus 303 p~s~~~~~~I~~~L~~Lg 320 (386)
T 3o2t_A 303 PASLEFQAQITTLLVDLG 320 (386)
T ss_dssp GGGGGGHHHHHHHHHHTT
T ss_pred CCchhhHHHHHHHHHHHc
Confidence 555566677777777653
No 115
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=96.87 E-value=0.097 Score=57.18 Aligned_cols=158 Identities=9% Similarity=0.032 Sum_probs=100.6
Q ss_pred CChHHHHHHHHHHHHHHHHhCCc--ccc----cchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHH
Q 007918 251 KSWRVRYMVANQLYELCEAVGPE--PTR----MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE 324 (585)
Q Consensus 251 ~~~~vR~~~~~~l~~l~~~~~~~--~~~----~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~ 324 (585)
+++.+|..+.-+++.++...-.. ..+ ..+...+.+.+...+.+-+..++++|+.++. +..++.+..
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--------p~~l~~l~~ 478 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--------PNSIKKIQR 478 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--------GGGHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--------hhHHHHHHH
Confidence 57789999999999998754211 112 2344445555566667778888889988864 223344444
Q ss_pred hcc-------CCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhh--cCCChHHHHHHHHHhHHhhhhhchhHHhhh
Q 007918 325 LSS-------DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL--KDEFPDVRLNIISKLDQVNQVIGIDLLSQS 395 (585)
Q Consensus 325 ~~~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 395 (585)
++. +...++|.+|+.+|..+....+ ..+-+.+.+.. ...++++|.+|+..|-.-... ..
T Consensus 479 ~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p-----~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~-------~~ 546 (1056)
T 1lsh_A 479 FLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP-----RKVQEIVLPIFLNVAIKSELRIRSCIVFFESKPS-------VA 546 (1056)
T ss_dssp TSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH-----HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCC-------HH
T ss_pred hhcCccccccccchHHHHHHHHHHHHhhhhch-----HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHCcC-------HH
Confidence 432 2346899999999999875432 22344455555 345689999999887654321 13
Q ss_pred HHHHHHH-HhcCCChHHHHHHHHHhHHHHHhhCh
Q 007918 396 LLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGV 428 (585)
Q Consensus 396 ll~~l~~-~~~~~~~~~r~~~~~~l~~l~~~~~~ 428 (585)
++..+.. +..+++..|+.-+...|..+++.-.+
T Consensus 547 ~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 547 LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 4444444 34567888888888888777765443
No 116
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.56 E-value=0.36 Score=42.48 Aligned_cols=70 Identities=14% Similarity=0.142 Sum_probs=42.2
Q ss_pred HHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChHHHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHh
Q 007918 122 LVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTELRSIYTQLCQDDMPMVRRSAASNLGKFAA 192 (585)
Q Consensus 122 ~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~ 192 (585)
+.+.+++-+..+..+.+..+|...+..+...+.. .++....+++.+..+++|+++.|-+.+..+...+..
T Consensus 50 ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~ 119 (257)
T 3gs3_A 50 LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYK 119 (257)
T ss_dssp GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4455555555555565666666666666655522 224555666666667777777777766666665554
No 117
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.53 E-value=0.53 Score=44.07 Aligned_cols=105 Identities=12% Similarity=0.089 Sum_probs=64.8
Q ss_pred HhchHHHhhhhhchhhHHHHHHHHHHHHHHhhcChhhHHhhHHHHHHHhhcCcCccchhhHHhhhHhhcCCCChHHHHHH
Q 007918 85 HVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRESDLVDWYIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDILKTEL 164 (585)
Q Consensus 85 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~r~~a~~~l~~~~~~~~~~~~~~l 164 (585)
..+..+|...-...+ ..+-....-...++-.-.+ .+.+.+++.+..+..+.+..+|..++..+...+.. ..+....+
T Consensus 25 ~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dp-sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~el~~~~ 101 (386)
T 3o2t_A 25 ERVVDLLNQAALITN-DSKITVLKQVQELIINKDP-TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIELLLKL 101 (386)
T ss_dssp HHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCG-GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHHHH
T ss_pred HHHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 334444444333222 2344444444444332233 35566777777788887778888888887777643 23455777
Q ss_pred HHHHHhhcCCCchHHHHHHHHhHHHHHh
Q 007918 165 RSIYTQLCQDDMPMVRRSAASNLGKFAA 192 (585)
Q Consensus 165 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~ 192 (585)
++.+..+++|.++.|-+.+..+...+..
T Consensus 102 l~~L~~LL~d~d~~V~K~~I~~~tslYp 129 (386)
T 3o2t_A 102 IANLNMLLRDENVNVVKKAILTMTQLYK 129 (386)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 7788888888888888888777776653
No 118
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=96.51 E-value=0.39 Score=42.29 Aligned_cols=89 Identities=18% Similarity=0.227 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHH
Q 007918 294 VRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVR 373 (585)
Q Consensus 294 vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr 373 (585)
.+...+.....++-.-.+. +.+++++.+..+..|++..+|...+..+...+.. +......+++.+..+++|.++.|.
T Consensus 31 ~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~ 107 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVI 107 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHH
Confidence 4444444444433332232 3355666666666667777777777766665522 123445566667777777777777
Q ss_pred HHHHHHhHHhhh
Q 007918 374 LNIISKLDQVNQ 385 (585)
Q Consensus 374 ~~a~~~l~~l~~ 385 (585)
+.++.+.+.++.
T Consensus 108 K~~I~~~~~iY~ 119 (257)
T 3gs3_A 108 KRVIQACGSIYK 119 (257)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777666543
No 119
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=95.36 E-value=0.87 Score=37.93 Aligned_cols=141 Identities=12% Similarity=0.132 Sum_probs=88.6
Q ss_pred HHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcC------CChHHHHHHHHHhHHHHHh--hChhhHHHHHHHHHHHH
Q 007918 371 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED------RHWRVRLAIIEYIPLLASQ--LGVGFFDDKLGALCMQW 442 (585)
Q Consensus 371 ~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~------~~~~~r~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~~ 442 (585)
..|..|+.+|..= .|. +.++|.+..++.+ .++..-...+.....+..+ +..+.+...++|.++.+
T Consensus 23 ~~r~~aL~sL~~D---~gL----~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtC 95 (196)
T 4atg_A 23 DMKDIAIECLEKE---SGL----QQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTC 95 (196)
T ss_dssp TTHHHHHHHHHHC---SSC----TTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC---CCh----hhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence 3466666666553 233 3456666554322 3555444455555555543 23455667788888887
Q ss_pred ccC---CchHHHHHHHHHHHHHHHHhCHH--HHHhhhHHHHHhhhcCc--chHHHHHHHHHHHHhhhhcChHHHHhcHHH
Q 007918 443 LQD---KVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEITCSRLLP 515 (585)
Q Consensus 443 l~d---~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~l~~~--~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~ 515 (585)
+-. ....+|..|+..++.++..++.. .....+...+.+.+.|+ .....-+|+..+..+. .+.+..-++|
T Consensus 96 ll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG----~~~vr~~llP 171 (196)
T 4atg_A 96 VIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS----KNVVNTVIRE 171 (196)
T ss_dssp HHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC----HHHHHTHHHH
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH----HHHHHHhhhc
Confidence 521 11289999999999999998863 34566777777777776 4667778887776654 4545555667
Q ss_pred HHHhhcC
Q 007918 516 VVINASK 522 (585)
Q Consensus 516 ~l~~~l~ 522 (585)
.+-...+
T Consensus 172 ~l~~~~~ 178 (196)
T 4atg_A 172 HAEEYKR 178 (196)
T ss_dssp HHHHHHH
T ss_pred CHHHHHH
Confidence 7766554
No 120
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=93.77 E-value=2.5 Score=35.13 Aligned_cols=141 Identities=14% Similarity=0.171 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHhCCcccccchHHHHHHhccCC------hHHHHHHHHHHHHHHHHh--hCHHHHHHhhHHHHHHh
Q 007918 254 RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN------EAEVRIAAAGKVTKFCRI--LNPELAIQHILPCVKEL 325 (585)
Q Consensus 254 ~vR~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~------~~~vr~~a~~~l~~l~~~--~~~~~~~~~i~~~l~~~ 325 (585)
..|..+.+.+.. +.....++|+|.+...+. +...-...++....+... +.-+.+...++|.+..+
T Consensus 23 ~~r~~aL~sL~~-------D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtC 95 (196)
T 4atg_A 23 DMKDIAIECLEK-------ESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTC 95 (196)
T ss_dssp TTHHHHHHHHHH-------CSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-------CCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence 346666666543 333567899888765431 334334444444444432 12234556677776654
Q ss_pred ccC---CcHHHHHHHHHHHHhhchhhCH--HHHHHhHHHHHHHhhcCC--ChHHHHHHHHHhHHhhhhhchhHHhhhHHH
Q 007918 326 SSD---SSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGIDLLSQSLLP 398 (585)
Q Consensus 326 ~~d---~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~ 398 (585)
+-. ....+|..|+..++.++..++. ....+.+...+.+.+.|+ ......+|+..|..+ |.+.+...++|
T Consensus 96 ll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l----G~~~vr~~llP 171 (196)
T 4atg_A 96 VIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL----SKNVVNTVIRE 171 (196)
T ss_dssp HHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH----CHHHHHTHHHH
T ss_pred HHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh----HHHHHHHhhhc
Confidence 311 1117899999999998888864 334566777777777765 356677777776654 44555455667
Q ss_pred HHHHHhc
Q 007918 399 AIVELAE 405 (585)
Q Consensus 399 ~l~~~~~ 405 (585)
.+..+.+
T Consensus 172 ~l~~~~~ 178 (196)
T 4atg_A 172 HAEEYKR 178 (196)
T ss_dssp HHHHHHH
T ss_pred CHHHHHH
Confidence 7766554
No 121
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=93.66 E-value=4 Score=37.06 Aligned_cols=207 Identities=12% Similarity=0.128 Sum_probs=129.8
Q ss_pred HHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhhh-chh----HH---hhhHHHHHHHHhcCCChHHHHHHHHHhHHHH
Q 007918 352 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GID----LL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 423 (585)
Q Consensus 352 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~----~~---~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~ 423 (585)
.+.+.++..+...+..-+.+.|+.+...+..+...- |.. .+ .+.++..+....++++-..-.+ ..+....
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G--~mLReci 151 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCG--IMLRECI 151 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHH--HHHHHHH
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHH--HHHHHHH
Confidence 345567777777777777888888887777665421 110 00 1345555555555554322111 1122221
Q ss_pred HhhChhhHHHHH-----HHHHHHHccCCchHHHHHHHHHHHHHHHH---hCHHHH---HhhhHHHHHhhhcCcchHHHHH
Q 007918 424 SQLGVGFFDDKL-----GALCMQWLQDKVYSIRDAAANNLKRLAEE---FGPEWA---MQHITPQVLEMINNPHYLYRMT 492 (585)
Q Consensus 424 ~~~~~~~~~~~l-----~~~l~~~l~d~~~~vr~~a~~~l~~l~~~---~~~~~~---~~~ll~~l~~~l~~~~~~~R~~ 492 (585)
+ -+.+...+ ...+.+.++.++.+|-.-|..++..+... +-.+++ .+.+......++.++|+.+|..
T Consensus 152 r---~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQ 228 (341)
T 1upk_A 152 R---HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ 228 (341)
T ss_dssp T---SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred H---hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHH
Confidence 1 11112211 22455678889999988888888877542 111222 2456777778899999999999
Q ss_pred HHHHHHHhhhhcChHHH------HhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch-H-------HHHhhHHHHHHH
Q 007918 493 ILRAISLLAPVMGSEIT------CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-S-------MVEKTIRPCLVE 558 (585)
Q Consensus 493 a~~~l~~l~~~~~~~~~------~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~-~-------~~~~~~~~~l~~ 558 (585)
++..++.+.-.-....+ -..-+..+..++.|++.+++..+...+...+..-.. + .-.+.++..|..
T Consensus 229 SlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~ 308 (341)
T 1upk_A 229 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSK 308 (341)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHh
Confidence 99999999753222211 245678899999999999999999999887654221 1 123567788888
Q ss_pred hcCCC
Q 007918 559 LTEDP 563 (585)
Q Consensus 559 l~~D~ 563 (585)
+..|+
T Consensus 309 f~~d~ 313 (341)
T 1upk_A 309 FQNDR 313 (341)
T ss_dssp TTTTC
T ss_pred CCCCC
Confidence 87777
No 122
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=93.59 E-value=1.1 Score=35.55 Aligned_cols=97 Identities=9% Similarity=-0.006 Sum_probs=66.8
Q ss_pred hcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHH----HhhhHHHHH
Q 007918 404 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVL 479 (585)
Q Consensus 404 ~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~ll~~l~ 479 (585)
+.+++|..-...++.+..= . .-....+..+.+.+.++++.+...|+..|..++++.|..+. ...++..+.
T Consensus 24 l~~~dw~~ileicD~I~~~-----~-~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~ 97 (149)
T 3g2s_A 24 NKELDWASINGFCEQLNED-----F-EGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELI 97 (149)
T ss_dssp CSSCCHHHHHHHHHHGGGS-----S-SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHCC-----C-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHH
Confidence 3457887655555554321 1 11334566777778889999999999999999998887653 255777777
Q ss_pred hhhcC------cchHHHHHHHHHHHHhhhhcCh
Q 007918 480 EMINN------PHYLYRMTILRAISLLAPVMGS 506 (585)
Q Consensus 480 ~~l~~------~~~~~R~~a~~~l~~l~~~~~~ 506 (585)
.++.+ .+..||...+..+..+...++.
T Consensus 98 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 130 (149)
T 3g2s_A 98 KVVSPKYLGSRTSEKVKNKILELLYSWTVGLPE 130 (149)
T ss_dssp HHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHcccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 77654 3567888888888888776544
No 123
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=93.36 E-value=3.6 Score=35.61 Aligned_cols=157 Identities=17% Similarity=0.221 Sum_probs=84.1
Q ss_pred HHHHHHHhcChhHHHHHHHhhhHHHHHHhhChhhhhhhcccccccccCCchHHHHHHHHHHhccccccCCcchHHhchHH
Q 007918 11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGVEHAHVLLPP 90 (585)
Q Consensus 11 i~~l~~~l~~~~~~~R~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~ 90 (585)
+..++..+.+++ .|..|+..|+.-.+ ....+-|++++... +-.+....+-.+-+++..+..
T Consensus 5 i~qli~~L~~p~--~Re~AL~eLsk~Re------~~~~La~~LW~S~G----tia~LLQEIisiYp~lspp~L------- 65 (268)
T 2fv2_A 5 IYQWINELSSPE--TRENALLELSKKRE------SVPDLAPMLWHSFG----TIAALLQEIVNIYPSINPPTL------- 65 (268)
T ss_dssp HHHHHHHTSSTT--THHHHHHHHHHHTT------TCTTHHHHHHHSTT----HHHHHHHHHHHTGGGBTTBCC-------
T ss_pred HHHHHHHhcCch--hHHHHHHHHHHhhh------ccccHHHHHHhccC----HHHHHHHHHHHHcccCCCccc-------
Confidence 455666676555 59999987776332 23467777765432 223333333333333332220
Q ss_pred HhhhhhchhhHHHH-HHHHHHHHHHhhcCh------hhHHhhHHHHHHHhhcCc-CccchhhHHhhhHhhcCCCChH---
Q 007918 91 LETLCTVEETCVRD-KAVESLCRIGSQMRE------SDLVDWYIPLVKRLAAGE-WFTARVSACGLFHIAYPSAPDI--- 159 (585)
Q Consensus 91 l~~l~~~~~~~vr~-~a~~~l~~l~~~~~~------~~~~~~l~~~l~~l~~~~-~~~~r~~a~~~l~~~~~~~~~~--- 159 (585)
.....-|- .|..-+..++..-.. ..+.-++.|++....++. .+..|.+....++.+...-+.+
T Consensus 66 ------t~~~SnRVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~ 139 (268)
T 2fv2_A 66 ------TAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVIN 139 (268)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHH
T ss_pred ------CHHHHhHHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHH
Confidence 00111111 112222222221111 223456788887666655 4677888888888887654443
Q ss_pred --HHHHHHHHHHhhcCCCchHHHHHHHHhHHHHHh
Q 007918 160 --LKTELRSIYTQLCQDDMPMVRRSAASNLGKFAA 192 (585)
Q Consensus 160 --~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~l~~ 192 (585)
...+++|+.....+..+...|..|.-.+.++..
T Consensus 140 fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~ 174 (268)
T 2fv2_A 140 FLLTTEIIPLCLRIMESGSELSKTVATFILQKILL 174 (268)
T ss_dssp HHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhc
Confidence 234677777777777766666666666666553
No 124
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=93.04 E-value=1.2 Score=34.92 Aligned_cols=96 Identities=11% Similarity=0.071 Sum_probs=60.8
Q ss_pred hcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHH----hhhHHHHH
Q 007918 404 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQVL 479 (585)
Q Consensus 404 ~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~----~~ll~~l~ 479 (585)
+.+++|..-...++.+.. ++ .-....+..+.+.+...++.+...|+..|..++++.|..+.. ..++..+.
T Consensus 18 l~~~dw~~ileicD~I~~-----~~-~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~ 91 (140)
T 3ldz_A 18 NTAEDWGLILDICDKVGQ-----SR-TGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVS 91 (140)
T ss_dssp SSSCCHHHHHHHHHHHTT-----ST-THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHC-----CC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHH
Confidence 355777765555554431 11 113345667777778888888888888888888888876532 44555555
Q ss_pred hhhcCcchHHHHHHHHHHHHhhhhcC
Q 007918 480 EMINNPHYLYRMTILRAISLLAPVMG 505 (585)
Q Consensus 480 ~~l~~~~~~~R~~a~~~l~~l~~~~~ 505 (585)
.++...+..||...+..+..+...++
T Consensus 92 ~l~~~~~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 92 NVLNKGHPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHhC
Confidence 55544556677777777666665444
No 125
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=92.88 E-value=0.76 Score=36.16 Aligned_cols=99 Identities=7% Similarity=0.063 Sum_probs=68.6
Q ss_pred HccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHH----HhcHHHHH
Q 007918 442 WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVV 517 (585)
Q Consensus 442 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~----~~~i~~~l 517 (585)
.+.+++|..-...+..+.. ++. -....+..+.+.+++++..+...|+..+..+++++|..+. ...++..+
T Consensus 17 ~l~~~dw~~ileicD~I~~-----~~~-~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el 90 (140)
T 3ldz_A 17 MNTAEDWGLILDICDKVGQ-----SRT-GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEV 90 (140)
T ss_dssp TSSSCCHHHHHHHHHHHTT-----STT-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHC-----CCc-CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHH
Confidence 3456666654444443321 111 1234566677778888999999999999999999998653 25567777
Q ss_pred HhhcCCCCchHHHHHHHHHHHHHhhhchH
Q 007918 518 INASKDRVPNIKFNVAKVLQSLIPIVDQS 546 (585)
Q Consensus 518 ~~~l~d~~~~vR~~~~~~l~~l~~~~~~~ 546 (585)
..+++..++.||..++..+......++..
T Consensus 91 ~~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 91 SNVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 77766678899999999998887766543
No 126
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=91.39 E-value=1.7 Score=34.53 Aligned_cols=74 Identities=15% Similarity=0.137 Sum_probs=59.3
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHH----HhcHHHHHHhhcCC------CCchHHHHHHHHHHHHHh
Q 007918 472 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD------RVPNIKFNVAKVLQSLIP 541 (585)
Q Consensus 472 ~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~----~~~i~~~l~~~l~d------~~~~vR~~~~~~l~~l~~ 541 (585)
...+..+...+++++..+...|+..+..++++||..+. ...++..+.+++++ .++.||..++..+.....
T Consensus 47 k~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 47 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 34566677778899999999999999999999998753 45677888887764 467899999999998887
Q ss_pred hhch
Q 007918 542 IVDQ 545 (585)
Q Consensus 542 ~~~~ 545 (585)
.++.
T Consensus 127 ~f~~ 130 (149)
T 3g2s_A 127 GLPE 130 (149)
T ss_dssp HCTT
T ss_pred HhCC
Confidence 7654
No 127
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=91.22 E-value=4.6 Score=31.95 Aligned_cols=97 Identities=7% Similarity=-0.008 Sum_probs=66.6
Q ss_pred hcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHH----HhhhHHHHH
Q 007918 404 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVL 479 (585)
Q Consensus 404 ~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~ll~~l~ 479 (585)
+.+++|..-...++.+..- . .-....+..+.+-+..+++.+...|+..|..++++.|..+. ...++..+.
T Consensus 14 l~~~dw~~~leicD~I~~~-----~-~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~ 87 (148)
T 1mhq_A 14 MSEQDWSAIQNFCEQVNTD-----P-NGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELI 87 (148)
T ss_dssp CSSCCHHHHHHHHHHHHHS-----S-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHcC-----C-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence 3467887655555555321 1 11234566677778889999999999999999998887653 256777777
Q ss_pred hhhcC------cchHHHHHHHHHHHHhhhhcCh
Q 007918 480 EMINN------PHYLYRMTILRAISLLAPVMGS 506 (585)
Q Consensus 480 ~~l~~------~~~~~R~~a~~~l~~l~~~~~~ 506 (585)
.++.+ .+..||..++..+..+...++.
T Consensus 88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 120 (148)
T 1mhq_A 88 KVLSPKYLGSWATGKVKGRVIEILFSWTVWFPE 120 (148)
T ss_dssp HTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 77653 3567888888888888776543
No 128
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=91.13 E-value=1.6 Score=35.37 Aligned_cols=67 Identities=9% Similarity=0.089 Sum_probs=31.2
Q ss_pred HHhhhcCcchHHHHHHHHHHHHhhhhcChHHH----HhcHHHHHHhhcCC-CCchHHHHHHHHHHHHHhhhc
Q 007918 478 VLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVD 544 (585)
Q Consensus 478 l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~----~~~i~~~l~~~l~d-~~~~vR~~~~~~l~~l~~~~~ 544 (585)
+.+.+++++..+...|+..+..++++||..+. ...++..+..+++. .++.||..++..+......++
T Consensus 57 l~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 57 IMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 33334444444444455555555554444321 12333333333332 345666666666666555443
No 129
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=90.66 E-value=3.4 Score=35.54 Aligned_cols=132 Identities=8% Similarity=0.009 Sum_probs=88.7
Q ss_pred HHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHcc-CCchHHHHHHHHHHHHHHHHhCHHHHHhhhHH
Q 007918 398 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAMQHITP 476 (585)
Q Consensus 398 ~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~ 476 (585)
..+..+..++....|..++..+....+.. .+.-++.+..++. -.+|.+....+.+++.++... .+.+.+
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~-----~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~-----~~~~~~ 127 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRF-----SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LTELPT 127 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGC-----CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GGGHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhC-----CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC-----hHHHHH
Confidence 55666777778888888888886653322 2345666666664 567788777666566665431 234667
Q ss_pred HHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhh
Q 007918 477 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 543 (585)
Q Consensus 477 ~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~ 543 (585)
.+.....+++.-+|..|+...-.... ....+.+++.+...+.|+..-||.++.++|..+....
T Consensus 128 ~i~~W~~s~~~w~rR~ai~~~l~~~~----~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~ 190 (220)
T 2b6c_A 128 IFALFYGAENFWNRRVALNLQLMLKE----KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTN 190 (220)
T ss_dssp HHHHHTTCSSHHHHHHHHHTTTTCGG----GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhC
Confidence 78889998886666665554321122 1123566777888999999999999999999987764
No 130
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=90.53 E-value=5.4 Score=32.51 Aligned_cols=96 Identities=7% Similarity=0.031 Sum_probs=67.8
Q ss_pred cCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHH----HhhhHHHHHh
Q 007918 405 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLE 480 (585)
Q Consensus 405 ~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~ 480 (585)
.+++|..-...++.+..- . .-....+..+.+.+...+..|...|+..|..++++.|..+. ...++..+..
T Consensus 27 ~~~Dw~~ileicD~I~~~-----~-~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~k 100 (171)
T 1juq_A 27 RQEDWEYIIGFCDQINKE-----L-EGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIK 100 (171)
T ss_dssp SSCCHHHHHHHHHHHHHS-----T-THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHcC-----C-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHH
Confidence 457887655555555332 1 11234566777788899999999999999999998777643 2556777777
Q ss_pred hhcC------cchHHHHHHHHHHHHhhhhcCh
Q 007918 481 MINN------PHYLYRMTILRAISLLAPVMGS 506 (585)
Q Consensus 481 ~l~~------~~~~~R~~a~~~l~~l~~~~~~ 506 (585)
++.. .+..||..++..+..+...++.
T Consensus 101 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 132 (171)
T 1juq_A 101 VVSPKYLGDRVSEKVKTKVIELLYSWTMALPE 132 (171)
T ss_dssp HHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HhccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 7652 3578899999998888876654
No 131
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=90.50 E-value=5.5 Score=31.53 Aligned_cols=98 Identities=13% Similarity=0.111 Sum_probs=69.8
Q ss_pred ccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHH----HhcHHHHHH
Q 007918 443 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVI 518 (585)
Q Consensus 443 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~----~~~i~~~l~ 518 (585)
+.+++|..-...+..+.. -+. -....+..+...++++|..+...|+..+..++++||..+. ...++..+.
T Consensus 14 l~~~dw~~~leicD~I~~----~~~--~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~ 87 (148)
T 1mhq_A 14 MSEQDWSAIQNFCEQVNT----DPN--GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELI 87 (148)
T ss_dssp CSSCCHHHHHHHHHHHHH----SSH--HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHc----CCc--cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence 445677654443333322 111 1234566677778899999999999999999999998653 467788888
Q ss_pred hhcCC------CCchHHHHHHHHHHHHHhhhchH
Q 007918 519 NASKD------RVPNIKFNVAKVLQSLIPIVDQS 546 (585)
Q Consensus 519 ~~l~d------~~~~vR~~~~~~l~~l~~~~~~~ 546 (585)
.++++ .++.||..++..+......++..
T Consensus 88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~ 121 (148)
T 1mhq_A 88 KVLSPKYLGSWATGKVKGRVIEILFSWTVWFPED 121 (148)
T ss_dssp HTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 88764 36799999999999888776543
No 132
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=90.48 E-value=4.8 Score=32.50 Aligned_cols=97 Identities=12% Similarity=0.079 Sum_probs=70.5
Q ss_pred hcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHH----HhhhHHHHH
Q 007918 404 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVL 479 (585)
Q Consensus 404 ~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~ll~~l~ 479 (585)
..+++|..-...++.+..- . .-....+..+.+.+...++.|...|+..|..++++.|..+. ...++..+.
T Consensus 28 ~~~~Dw~~~leicD~I~~~-----~-~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~ 101 (163)
T 1x5b_A 28 NTTEDWSLIMDICDKVGST-----P-NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVR 101 (163)
T ss_dssp CSSCCHHHHHHHHHHHHHS-----S-SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhCC-----C-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 3467888766666555431 1 11334566777888899999999999999999999888653 256777777
Q ss_pred hhhcC-cchHHHHHHHHHHHHhhhhcCh
Q 007918 480 EMINN-PHYLYRMTILRAISLLAPVMGS 506 (585)
Q Consensus 480 ~~l~~-~~~~~R~~a~~~l~~l~~~~~~ 506 (585)
.++.. .+..||..++..+..+...++.
T Consensus 102 ~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 102 AVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 76654 4578999999999888876654
No 133
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=90.29 E-value=10 Score=34.42 Aligned_cols=187 Identities=9% Similarity=0.030 Sum_probs=113.5
Q ss_pred HhhHHHHHHhccCCcHHHHHHHHHHHHhhchhh-CHH----HH---HHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhh-
Q 007918 316 QHILPCVKELSSDSSQHVRSALASVIMGMAPLL-GKD----AT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV- 386 (585)
Q Consensus 316 ~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~~~----~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~- 386 (585)
..++..+...+..=+++.|..+...+..+...- |.. .+ .+.++..+..+..+++... .+-.-|...+++
T Consensus 77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl--~~G~mLRecir~e 154 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIAL--NCGIMLRECIRHE 154 (341)
T ss_dssp HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHH--HHHHHHHHHHTSH
T ss_pred hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHh--HHHHHHHHHHHhH
Confidence 455566666666677777877777777664422 110 11 2345555666665543222 222222221111
Q ss_pred -hchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhC---hhhH---HHHHHHHHHHHccCCchHHHHHHHHHHH
Q 007918 387 -IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFF---DDKLGALCMQWLQDKVYSIRDAAANNLK 459 (585)
Q Consensus 387 -~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~---~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~ 459 (585)
+..-.+....+-.+.+....++..+-..|..++..+..... .+++ .+.+...+.+++.++++-.|..+++.||
T Consensus 155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg 234 (341)
T 1upk_A 155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 234 (341)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 00000111122345567788999999999988887764321 1222 2345667778999999999999999999
Q ss_pred HHHHHhCHHHH------HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhc
Q 007918 460 RLAEEFGPEWA------MQHITPQVLEMINNPHYLYRMTILRAISLLAPVM 504 (585)
Q Consensus 460 ~l~~~~~~~~~------~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~ 504 (585)
.+.-.=....+ ...-+..++.++.|+...++..|...+.-++.+-
T Consensus 235 elLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 235 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 99753111111 2456778889999999999999999998777543
No 134
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=88.58 E-value=14 Score=33.60 Aligned_cols=118 Identities=7% Similarity=-0.015 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH-hCHHHH--HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcCh
Q 007918 430 FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE-FGPEWA--MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS 506 (585)
Q Consensus 430 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~-~~~~~~--~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~ 506 (585)
|+...-+..+++...+...+....++.+++.++.+ .|-+.. ...++..+..++++....+-..|+..+..++.+...
T Consensus 156 FI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~ 235 (339)
T 3dad_A 156 FVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSEN 235 (339)
T ss_dssp HHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcc
Confidence 33444466677777777888888888888888653 122111 245666777777777777888888888877765421
Q ss_pred H--HHHhc-----------HHHHHHhhcC---CCCchHHHHHHHHHHHHHhhhchHH
Q 007918 507 E--ITCSR-----------LLPVVINASK---DRVPNIKFNVAKVLQSLIPIVDQSM 547 (585)
Q Consensus 507 ~--~~~~~-----------i~~~l~~~l~---d~~~~vR~~~~~~l~~l~~~~~~~~ 547 (585)
. .+... -...++..++ ..+.++..+++..+-.+....+...
T Consensus 236 ~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd~d 292 (339)
T 3dad_A 236 NAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPDQD 292 (339)
T ss_dssp GHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSSHH
T ss_pred cchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCChh
Confidence 1 11111 1345666665 5688888888888888877766443
No 135
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=88.50 E-value=5.9 Score=32.28 Aligned_cols=109 Identities=14% Similarity=0.076 Sum_probs=73.2
Q ss_pred ccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHH----HhcHHHHHH
Q 007918 443 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVI 518 (585)
Q Consensus 443 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~----~~~i~~~l~ 518 (585)
+.+++|..-...+..+.. -. . -....+..+...++++|..+...|+..+..++++||..+. ...++..+.
T Consensus 26 l~~~Dw~~ileicD~I~~----~~-~-~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~ 99 (171)
T 1juq_A 26 NRQEDWEYIIGFCDQINK----EL-E-GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELI 99 (171)
T ss_dssp CSSCCHHHHHHHHHHHHH----ST-T-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHc----CC-c-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence 445677654444433322 11 1 1234566677778899999999999999999999997643 346677777
Q ss_pred hhcCC------CCchHHHHHHHHHHHHHhhhchHHHHhhHHHHHH
Q 007918 519 NASKD------RVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLV 557 (585)
Q Consensus 519 ~~l~d------~~~~vR~~~~~~l~~l~~~~~~~~~~~~~~~~l~ 557 (585)
.+++. .++.||..++..+......++...........|.
T Consensus 100 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~~~i~~~y~~Lk 144 (171)
T 1juq_A 100 KVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLK 144 (171)
T ss_dssp HHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 77753 3679999999999998877765433333444444
No 136
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=87.57 E-value=3.9 Score=35.24 Aligned_cols=36 Identities=11% Similarity=-0.013 Sum_probs=23.0
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHH
Q 007918 434 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW 469 (585)
Q Consensus 434 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 469 (585)
..+..+.+-+...++.|...|+..|..++++-|..+
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f 80 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTV 80 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHH
Confidence 345556666666666677777777766666666653
No 137
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=87.29 E-value=9.3 Score=32.72 Aligned_cols=131 Identities=11% Similarity=0.021 Sum_probs=88.1
Q ss_pred HHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcC-CChHHHHHHHHHhHHHHHhhChhhHHHHHHH
Q 007918 359 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 437 (585)
Q Consensus 359 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~-~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~ 437 (585)
..+..+..++.-+.|..|+..+......+ .+..++.+..++.. .+|.+--..+.+++.+..... ..+.+
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~-----~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~-----~~~~~ 127 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRF-----SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHL-----TELPT 127 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGC-----CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSG-----GGHHH
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhC-----CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHCh-----HHHHH
Confidence 67777777777888888888887654332 23566666666654 567766555544555443321 22567
Q ss_pred HHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhh
Q 007918 438 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV 503 (585)
Q Consensus 438 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~ 503 (585)
.+.....|++..+|..|+..+-.... ....+.+++.+..++.|+.+-+|.+...+|..+.+.
T Consensus 128 ~i~~W~~s~~~w~rR~ai~~~l~~~~----~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~ 189 (220)
T 2b6c_A 128 IFALFYGAENFWNRRVALNLQLMLKE----KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT 189 (220)
T ss_dssp HHHHHTTCSSHHHHHHHHHTTTTCGG----GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence 78889999999998888775522211 112244566666688999999999999999998875
No 138
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=87.00 E-value=7.9 Score=33.29 Aligned_cols=69 Identities=9% Similarity=0.119 Sum_probs=31.9
Q ss_pred HHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHH----HhcHHHHHHhhcC-CCCchHHHHHHHHHHHHHhhh
Q 007918 475 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIV 543 (585)
Q Consensus 475 l~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~----~~~i~~~l~~~l~-d~~~~vR~~~~~~l~~l~~~~ 543 (585)
+..+...+++++..+...|+..+..+++++|..+. ...++..|..+++ ..++.||..++..+......+
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 33344444455555555555555555555554321 2233333333332 234455555555555554444
No 139
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=84.78 E-value=2.8 Score=32.11 Aligned_cols=94 Identities=14% Similarity=0.163 Sum_probs=44.9
Q ss_pred hhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhh
Q 007918 472 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKT 551 (585)
Q Consensus 472 ~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~ 551 (585)
..++|.++..++|.||.+....+..+.... +.++|.+...+.+.+..=+. .++..++..++. .....
T Consensus 30 ~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~---------~~l~p~I~~vl~s~D~~W~y---wil~~lv~~~~~-~~~~~ 96 (134)
T 3ut4_A 30 EPIIFDLLKWLQDYNWPIAKDILPVVVLHQ---------SIAMPHILTILQGNDIMWKY---WVIKLMIPYLIY-PNKQL 96 (134)
T ss_dssp HHHHHHHHGGGSCTTSTTHHHHHHHHHHTH---------HHHHHHHHHHHHSSCHHHHH---HHHHHHGGGCCH-HHHHH
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHcc---------HhhHHHHHHHHHcCChHHHH---HHHHHHHHcCCH-HHHHH
Confidence 345666666666666666655555554322 23334444444333332222 222333333322 23345
Q ss_pred HHHHHHHhcCC-----CCccHHHHHHHHHHHH
Q 007918 552 IRPCLVELTED-----PDVDVRFFATQAIQSI 578 (585)
Q Consensus 552 ~~~~l~~l~~D-----~~~~Vr~~a~~al~~l 578 (585)
+.+.|.++... ...+|...|.+.++.+
T Consensus 97 l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~ 128 (134)
T 3ut4_A 97 VKSELERLSSLEIINEDIREIVNLSKDYLHFY 128 (134)
T ss_dssp HHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 66666665443 2455666666665554
No 140
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=84.68 E-value=7 Score=31.31 Aligned_cols=97 Identities=12% Similarity=0.131 Sum_probs=63.3
Q ss_pred ccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhhhhcChHHH----HhcHHHH-
Q 007918 443 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPV- 516 (585)
Q Consensus 443 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~-~~~~~~R~~a~~~l~~l~~~~~~~~~----~~~i~~~- 516 (585)
+.+++|..-...+..+.. -. . -....+..+...++ +++..+...|+..+..++++||..+. ...++..
T Consensus 29 l~~~Dw~~~leicD~I~~----~~-~-~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~ 102 (157)
T 1elk_A 29 LQSEDWALNMEICDIINE----TE-E-GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESV 102 (157)
T ss_dssp CSSCCHHHHHHHHHHHHH----SS-S-HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhC----CC-c-cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHH
Confidence 345677665544443321 11 1 12345566666676 57889999999999999999998653 2456665
Q ss_pred HHhhcC---CCCchHHHHHHHHHHHHHhhhch
Q 007918 517 VINASK---DRVPNIKFNVAKVLQSLIPIVDQ 545 (585)
Q Consensus 517 l~~~l~---d~~~~vR~~~~~~l~~l~~~~~~ 545 (585)
+.+.+. ++...||..++..+......++.
T Consensus 103 Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~ 134 (157)
T 1elk_A 103 LVRTILPKNNPPTIVHDKVLNLIQSWADAFRS 134 (157)
T ss_dssp THHHHSTTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccCCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 556553 33458999999888888766543
No 141
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=81.61 E-value=6.1 Score=30.74 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=47.6
Q ss_pred HHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhchHHHHhh------HHHHHHHhcC--CC------CccHHHHHHHH
Q 007918 509 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKT------IRPCLVELTE--DP------DVDVRFFATQA 574 (585)
Q Consensus 509 ~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~~------~~~~l~~l~~--D~------~~~Vr~~a~~a 574 (585)
+...++..|.+-++++++.++.-++++|..++..-. +.+... ++..+..+.- |+ -.+||..|..+
T Consensus 46 ~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs-~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl 124 (140)
T 1vdy_A 46 IVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSG-SEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHET 124 (140)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCC-HHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHH
Confidence 457889999999999999999999999999886643 322222 2222222221 32 26789999988
Q ss_pred HHHHH
Q 007918 575 IQSID 579 (585)
Q Consensus 575 l~~l~ 579 (585)
++.|.
T Consensus 125 ~~ll~ 129 (140)
T 1vdy_A 125 ISAIF 129 (140)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88765
No 142
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=81.22 E-value=19 Score=28.73 Aligned_cols=96 Identities=15% Similarity=0.162 Sum_probs=66.9
Q ss_pred hcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHcc-CCchHHHHHHHHHHHHHHHHhCHHHHH----hhhHHH-
Q 007918 404 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQ- 477 (585)
Q Consensus 404 ~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~----~~ll~~- 477 (585)
+.+++|..-...++.+.. +. .-....+..+.+.+. .+++.|...|+..|..++++.|..+.. ..++..
T Consensus 29 l~~~Dw~~~leicD~I~~-----~~-~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~ 102 (157)
T 1elk_A 29 LQSEDWALNMEICDIINE-----TE-EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESV 102 (157)
T ss_dssp CSSCCHHHHHHHHHHHHH-----SS-SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHhC-----CC-ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHH
Confidence 345788876666665532 11 113445667777776 588999999999999999998887542 456666
Q ss_pred HHhhhc---CcchHHHHHHHHHHHHhhhhcC
Q 007918 478 VLEMIN---NPHYLYRMTILRAISLLAPVMG 505 (585)
Q Consensus 478 l~~~l~---~~~~~~R~~a~~~l~~l~~~~~ 505 (585)
+...+. ++...||..++..+..+...++
T Consensus 103 Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~ 133 (157)
T 1elk_A 103 LVRTILPKNNPPTIVHDKVLNLIQSWADAFR 133 (157)
T ss_dssp THHHHSTTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccCCCCcHHHHHHHHHHHHHHHHHcC
Confidence 556553 3446899999999988887654
No 143
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=81.01 E-value=40 Score=32.28 Aligned_cols=250 Identities=11% Similarity=0.102 Sum_probs=127.3
Q ss_pred cCCChHHHHHHHHHHHHHHHH--hCCc----ccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhC-HH-HHHHhhHH
Q 007918 249 QDKSWRVRYMVANQLYELCEA--VGPE----PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN-PE-LAIQHILP 320 (585)
Q Consensus 249 ~d~~~~vR~~~~~~l~~l~~~--~~~~----~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~-~~-~~~~~i~~ 320 (585)
.|.+|..-..+.+.|..+... +... .....++-.++.++..+|+.-|......|..+-..+. .. .+...+-.
T Consensus 127 ~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~n 206 (449)
T 2npp_B 127 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN 206 (449)
T ss_dssp CCTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467898888888888877654 2211 2233577788889999999999888888877655432 21 22233333
Q ss_pred HHHHhccCCc-HHHHHHHHHHHHhhchhhC---HHHHHHhHHHHHHHhhcCCChHH-HHHHHHHhHHhhhhhchhHHhhh
Q 007918 321 CVKELSSDSS-QHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPDV-RLNIISKLDQVNQVIGIDLLSQS 395 (585)
Q Consensus 321 ~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~v-r~~a~~~l~~l~~~~~~~~~~~~ 395 (585)
.+.++..... ..=-..+.+.++.+...+. ++.....+...+..+.+...-.+ -.....++..+.+. ...+...
T Consensus 207 if~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK--Dp~L~~~ 284 (449)
T 2npp_B 207 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK--DSTLTEP 284 (449)
T ss_dssp HHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHH--CGGGHHH
T ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhc--CcHhHHH
Confidence 3333332211 1111234555555544432 12222222233333333322111 11222222222221 0112233
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHH---HHHHHccCCchHHHHHHHHHHHHH--HHHhCHHHH
Q 007918 396 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA---LCMQWLQDKVYSIRDAAANNLKRL--AEEFGPEWA 470 (585)
Q Consensus 396 ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~---~l~~~l~d~~~~vr~~a~~~l~~l--~~~~~~~~~ 470 (585)
++..+....--.+..-....+..+..+.+..++..+.....| .+-.++.+++..|-+.|+..+..= ...... .
T Consensus 285 vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~--n 362 (449)
T 2npp_B 285 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD--N 362 (449)
T ss_dssp HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHT--T
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHh--c
Confidence 444444444444555556677778888888887776654433 456678899999988887655211 111100 1
Q ss_pred HhhhHHHHHhhh-----cCcchHHHHHHHHHHHHhhh
Q 007918 471 MQHITPQVLEMI-----NNPHYLYRMTILRAISLLAP 502 (585)
Q Consensus 471 ~~~ll~~l~~~l-----~~~~~~~R~~a~~~l~~l~~ 502 (585)
...++|.+...+ ++=+..+|..+..++..+.+
T Consensus 363 ~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e 399 (449)
T 2npp_B 363 AAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 399 (449)
T ss_dssp HHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred hhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 233455544432 11245577777777765543
No 144
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=78.85 E-value=31 Score=29.71 Aligned_cols=131 Identities=15% Similarity=0.032 Sum_probs=69.1
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhc-cCCcHHHHHHHH-HHHHhhchhhCHHHHHHhHH
Q 007918 281 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS-SDSSQHVRSALA-SVIMGMAPLLGKDATIEQLL 358 (585)
Q Consensus 281 ~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~vr~~a~-~~l~~l~~~~~~~~~~~~l~ 358 (585)
..+..+..++..+.|..++..+....+.+.++. ++.+..++ ..++|.+-...+ ..++.+....+ +.+.
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~-----l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p-----~~~~ 133 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKHINETH-----IPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHP-----ELIS 133 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGG-----HHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCG-----GGGG
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHH-----HHHHHHHHccCCChHHHHHhhHHHHHHHHHHCH-----HHHH
Confidence 455556666666777777766654433333322 12222222 346677665553 34444432211 1244
Q ss_pred HHHHHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHh
Q 007918 359 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 425 (585)
Q Consensus 359 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~ 425 (585)
+.+.....+++..+|..++..+-... ..... ..+.+.+...+.|+++-++.++...|..+.+.
T Consensus 134 ~~l~~W~~s~~~w~rR~ai~~~l~~~---~~~d~-~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~ 196 (232)
T 3jxy_A 134 AYIPKWIASDNIWLQRAAILFQLKYK---QKMDE-ELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT 196 (232)
T ss_dssp GTHHHHHHSSCHHHHHHHHHTTTTCG---GGCCH-HHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHH---hCCCH-HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 55666777777777777766542221 11111 23455556667777777777777777666543
No 145
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=78.82 E-value=47 Score=31.80 Aligned_cols=59 Identities=12% Similarity=0.050 Sum_probs=30.8
Q ss_pred CChHHHHHHHHHHHHHHHHh--hCH----HHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchh
Q 007918 289 DNEAEVRIAAAGKVTKFCRI--LNP----ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL 347 (585)
Q Consensus 289 d~~~~vr~~a~~~l~~l~~~--~~~----~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~ 347 (585)
|..|.=...+-+.+-.+... +.+ ..+...++-.+..++.+++++-|......+..+...
T Consensus 128 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~K 192 (449)
T 2npp_B 128 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGK 192 (449)
T ss_dssp CTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHS
T ss_pred cccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHH
Confidence 44555455555555555432 111 122234455556666667777777666666665443
No 146
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=76.38 E-value=11 Score=32.24 Aligned_cols=35 Identities=9% Similarity=-0.074 Sum_probs=21.1
Q ss_pred HHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHH
Q 007918 434 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 468 (585)
Q Consensus 434 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 468 (585)
..+..+.+-+..+++.|...|+..|..++++-|..
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~ 76 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP 76 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHH
Confidence 44555555566666666666666666666655544
No 147
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=76.37 E-value=26 Score=29.93 Aligned_cols=66 Identities=9% Similarity=0.094 Sum_probs=28.7
Q ss_pred HHhhhcCcchHHHHHHHHHHHHhhhhcChHHH----HhcHHHHHHhhcC-CCCchHHHHHHHHHHHHHhhh
Q 007918 478 VLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIV 543 (585)
Q Consensus 478 l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~----~~~i~~~l~~~l~-d~~~~vR~~~~~~l~~l~~~~ 543 (585)
+.+-+++++..+...|+..+..+++++|..+. ...++..+..+++ ..++.||..++..+......+
T Consensus 47 l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 117 (220)
T 1dvp_A 47 IKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAF 117 (220)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Confidence 33334445555555555555555555444321 1223333333322 234455555555555544443
No 148
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=75.15 E-value=56 Score=30.74 Aligned_cols=107 Identities=7% Similarity=0.087 Sum_probs=58.1
Q ss_pred hHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHH---HhcHHHHHHhhcCCCCchHHHHHHHHHHH--HHhhh--chH
Q 007918 474 ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT---CSRLLPVVINASKDRVPNIKFNVAKVLQS--LIPIV--DQS 546 (585)
Q Consensus 474 ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~---~~~i~~~l~~~l~d~~~~vR~~~~~~l~~--l~~~~--~~~ 546 (585)
++..++..---.+.......+.-+..+.+.+++..+ ...+...+..++++++..|-..|+..+.. +...+ ...
T Consensus 252 vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~ 331 (403)
T 3fga_B 252 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAA 331 (403)
T ss_dssp HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHH
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHH
Confidence 344444332233455555566666777777766654 33445555566677777766666554421 11111 112
Q ss_pred HHHhhHHHHHHHhcC-CCCccHHHHHHHHHHHHHH
Q 007918 547 MVEKTIRPCLVELTE-DPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 547 ~~~~~~~~~l~~l~~-D~~~~Vr~~a~~al~~l~~ 580 (585)
.+.+.+.|.|.+... .=+..||..+..+++.+..
T Consensus 332 ~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e 366 (403)
T 3fga_B 332 KILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME 366 (403)
T ss_dssp HHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 445566666666433 3366677777777776644
No 149
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=75.00 E-value=56 Score=30.71 Aligned_cols=209 Identities=10% Similarity=0.093 Sum_probs=107.1
Q ss_pred ccCCChHHHHHHHHHHHHHHHHhC------CcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCH-H-HHHHhhH
Q 007918 248 SQDKSWRVRYMVANQLYELCEAVG------PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP-E-LAIQHIL 319 (585)
Q Consensus 248 ~~d~~~~vR~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~-~-~~~~~i~ 319 (585)
..|.+|..-..+.+.|..+...-. +......++-.++.++..+|+.-|......+..+-..+.. . .+...+-
T Consensus 93 ~~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~in 172 (403)
T 3fga_B 93 TLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQIN 172 (403)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred ccccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 357789888888888887765421 1222234677788899999999998888877776544332 1 1222233
Q ss_pred HHHHHhccCCc-HHHHHHHHHHHHhhchhhC---HHHHHHhHHHHHHHhhcCCChHH-HHHHHHHhHHhhhhhchhHHhh
Q 007918 320 PCVKELSSDSS-QHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPDV-RLNIISKLDQVNQVIGIDLLSQ 394 (585)
Q Consensus 320 ~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~v-r~~a~~~l~~l~~~~~~~~~~~ 394 (585)
..+.++..... ..=-....+.++.+...+. ++.....+...+..+.+...-.+ -.....++..+.+. ...+..
T Consensus 173 nif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eK--Dp~L~~ 250 (403)
T 3fga_B 173 NIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK--DSTLTE 250 (403)
T ss_dssp HHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHH--CGGGHH
T ss_pred HHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHh--CchhHH
Confidence 33333322111 1101234455555544442 11111122222333333322111 11222222222211 011223
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHH---HHHHHccCCchHHHHHHHHHH
Q 007918 395 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA---LCMQWLQDKVYSIRDAAANNL 458 (585)
Q Consensus 395 ~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~---~l~~~l~d~~~~vr~~a~~~l 458 (585)
.++..+....--.+..-....+..+..+.+.+++..+.....| .+..++.+++..|-+.|+..+
T Consensus 251 ~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~w 317 (403)
T 3fga_B 251 PVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW 317 (403)
T ss_dssp HHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 3444444444445555556677778888887777766554433 355667888989888877554
No 150
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=74.85 E-value=26 Score=26.84 Aligned_cols=91 Identities=14% Similarity=0.162 Sum_probs=48.3
Q ss_pred HHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHHHhcHH
Q 007918 435 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLL 514 (585)
Q Consensus 435 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~i~ 514 (585)
++|-++..++|.||.+-...+..|..+- +.++|.+.+.+++.+..=. ...+..+....+.. ....+.
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~~~~---------~~l~p~I~~vl~s~D~~W~---ywil~~lv~~~~~~-~~~~l~ 98 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVVLHQ---------SIAMPHILTILQGNDIMWK---YWVIKLMIPYLIYP-NKQLVK 98 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHHHTH---------HHHHHHHHHHHHSSCHHHH---HHHHHHHGGGCCHH-HHHHHH
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHcc---------HhhHHHHHHHHHcCChHHH---HHHHHHHHHcCCHH-HHHHHH
Confidence 5666777778888877766666665431 2356666665544432212 22333344444443 345666
Q ss_pred HHHHhhcCCC-----CchHHHHHHHHHHH
Q 007918 515 PVVINASKDR-----VPNIKFNVAKVLQS 538 (585)
Q Consensus 515 ~~l~~~l~d~-----~~~vR~~~~~~l~~ 538 (585)
|.+.++...+ ...|...|-..|..
T Consensus 99 ~eL~rl~~~pt~~E~~eev~e~A~~iL~~ 127 (134)
T 3ut4_A 99 SELERLSSLEIINEDIREIVNLSKDYLHF 127 (134)
T ss_dssp HHHHHHHTCCCSSGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHHH
Confidence 6666666554 23344444444443
No 151
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=74.83 E-value=40 Score=28.97 Aligned_cols=129 Identities=12% Similarity=0.064 Sum_probs=69.1
Q ss_pred HHHHhccC--hhHHHHHHHHHHHHhhccCchhhhhhhHHHHHHhc-cCCChHHHHHH-HHHHHHHHHHhCCcccccchHH
Q 007918 206 IFEDLTQD--DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMV-ANQLYELCEAVGPEPTRMDLVP 281 (585)
Q Consensus 206 ~l~~l~~d--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~-~d~~~~vR~~~-~~~l~~l~~~~~~~~~~~~l~~ 281 (585)
++..+.++ .+.|..|+..+....+.+.++ .++.+..++ ..++|.+-... ...++.+... .+....+
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~-----~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~-----~p~~~~~ 134 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHINET-----HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLK-----HPELISA 134 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG-----GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHH-----CGGGGGG
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHccCCChHHHHHhhHHHHHHHHHH-----CHHHHHH
Confidence 33444444 457777777766543333222 222333332 34667664444 3455555543 1223455
Q ss_pred HHHHhccCChHHHHHHHHHHHHHHHHhhCHHHHHHhhHHHHHHhccCCcHHHHHHHHHHHHhhchhh
Q 007918 282 AYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL 348 (585)
Q Consensus 282 ~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~ 348 (585)
.+.....|++.-+|+.++..+-..... .. ...+.+.+...+.|++..||.+...+|..++...
T Consensus 135 ~l~~W~~s~~~w~rR~ai~~~l~~~~~---~d-~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~ 197 (232)
T 3jxy_A 135 YIPKWIASDNIWLQRAAILFQLKYKQK---MD-EELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTN 197 (232)
T ss_dssp THHHHHHSSCHHHHHHHHHTTTTCGGG---CC-HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHhC---CC-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhC
Confidence 666777777766666665544221111 11 1334555666777888888888888888777553
No 152
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=74.01 E-value=22 Score=27.56 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=44.3
Q ss_pred HHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHH
Q 007918 402 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 468 (585)
Q Consensus 402 ~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 468 (585)
+...+.+|..-...+.-|..+..... ..+...+++.+.+.+.+..+.+...|+..|..++...+..
T Consensus 18 ~ATs~d~~~~pgylm~EIA~~T~~s~-~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~ 83 (140)
T 1vdy_A 18 AVTSDEDKVAPVYKLEEICDLLRSSH-VSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE 83 (140)
T ss_dssp HTTCSCSSCCCHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH
T ss_pred HHhcCCCCCCcHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH
Confidence 34455555544444444444432221 1234678999999999999999999999999999865554
No 153
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=73.83 E-value=32 Score=29.84 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHhCHHHH----HhhhHHHHHhhhcCcchHHHHHHHHHHHHhh
Q 007918 448 YSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLEMINNPHYLYRMTILRAISLLA 501 (585)
Q Consensus 448 ~~vr~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~ 501 (585)
..+|..++..+|.+.+.-..+.. ..+++|.++..+...+...+..|...+..|.
T Consensus 116 E~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL 173 (268)
T 2fv2_A 116 EYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL 173 (268)
T ss_dssp HHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 45777777777777766444442 2556777777777777667777776666665
No 154
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=72.59 E-value=55 Score=29.53 Aligned_cols=107 Identities=11% Similarity=0.118 Sum_probs=69.9
Q ss_pred hHHHHHhhhcC-cchHHHHHHHHHHHHhhhh-cChHHH---HhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhhhch---
Q 007918 474 ITPQVLEMINN-PHYLYRMTILRAISLLAPV-MGSEIT---CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--- 545 (585)
Q Consensus 474 ll~~l~~~l~~-~~~~~R~~a~~~l~~l~~~-~~~~~~---~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~~~~--- 545 (585)
++..+...+.+ .....+..+++++.++... .|...+ .+.++..+...+.+++.++|.+++..+.++......
T Consensus 148 l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~ 227 (304)
T 3ebb_A 148 FSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHN 227 (304)
T ss_dssp HHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCC
Confidence 44444444443 3455688999999888763 233322 356777777777788999999999999888654321
Q ss_pred HHHHhhHHHHHHHhc-CCCCccHHHHHHHHHHHHHH
Q 007918 546 SMVEKTIRPCLVELT-EDPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 546 ~~~~~~~~~~l~~l~-~D~~~~Vr~~a~~al~~l~~ 580 (585)
.+....++..+..+. ...|.+..+.+..|++.+..
T Consensus 228 ~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~ 263 (304)
T 3ebb_A 228 IEGKAQCLSLISTILEVVQDLEATFRLLVALGTLIS 263 (304)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 123344666666543 45688888888888887763
No 155
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=64.20 E-value=95 Score=29.06 Aligned_cols=209 Identities=11% Similarity=0.103 Sum_probs=100.4
Q ss_pred ccCCChHHHHHHHHHHHHHHHH--hC----CcccccchHHHHHHhccCChHHHHHHHHHHHHHHHHhhCH-H-HHHHhhH
Q 007918 248 SQDKSWRVRYMVANQLYELCEA--VG----PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP-E-LAIQHIL 319 (585)
Q Consensus 248 ~~d~~~~vR~~~~~~l~~l~~~--~~----~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~-~-~~~~~i~ 319 (585)
..|.+|..-..+.+.|..+... +. +......++-.++.++..+|+.-|......+..+-..+.. . .+...+-
T Consensus 138 ~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~ 217 (392)
T 2jak_A 138 TLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQIN 217 (392)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899888888888877653 11 2222345777888899999999998888888776544322 1 2223333
Q ss_pred HHHHHhccCCcH-HHHHHHHHHHHhhchhhC---HHHHHHhHHHHHHHhhcCCChHH-HHHHHHHhHHhhhhhchhHHhh
Q 007918 320 PCVKELSSDSSQ-HVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPDV-RLNIISKLDQVNQVIGIDLLSQ 394 (585)
Q Consensus 320 ~~l~~~~~d~~~-~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~v-r~~a~~~l~~l~~~~~~~~~~~ 394 (585)
..+.++...... .=-..+.+.++.+...+. ++.....+...+..+.+...-.+ -.....++..+.+. ...+..
T Consensus 218 nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK--Dp~L~~ 295 (392)
T 2jak_A 218 NIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK--DSTLTE 295 (392)
T ss_dssp HHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHH--CGGGHH
T ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhc--CchhHH
Confidence 334443332111 111234444444444332 11111112222222222221100 01111122221111 001112
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHH---HHHHccCCchHHHHHHHHHH
Q 007918 395 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL---CMQWLQDKVYSIRDAAANNL 458 (585)
Q Consensus 395 ~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~---l~~~l~d~~~~vr~~a~~~l 458 (585)
.++..+....--.+..-....+..+..+...+++..+.....|+ +-.++.+++..|-+.|+..+
T Consensus 296 ~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 296 PVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp HHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 33333333332233333445666677777766666655443333 45566777777777766544
No 156
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=63.71 E-value=53 Score=25.96 Aligned_cols=97 Identities=9% Similarity=0.077 Sum_probs=60.7
Q ss_pred hcCCChHHHHHHHHHhHHHHHhhChhhHHHHHHHHHHHHccC-CchHHHHHHHHHHHHHHHHhCHHHHH----hhhHHH-
Q 007918 404 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEWAM----QHITPQ- 477 (585)
Q Consensus 404 ~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~----~~ll~~- 477 (585)
+.+++|..-...++.+..= . .-....+..+.+.+.. ++..+...|+..|..++++.|..+.. ..++..
T Consensus 29 l~~~Dw~~ileicD~In~~-----~-~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~ 102 (152)
T 3rru_A 29 VQTEDWGQFMHICDIINTT-----Q-DGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKEN 102 (152)
T ss_dssp CCSCCHHHHHHHHHHHHHS-----T-THHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTT
T ss_pred CCCccHHHHHHHHHHHhCC-----C-ccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHH
Confidence 3457888655555555431 1 1133456666666663 57778788999999999988886532 344443
Q ss_pred HHhhhcCc---chHHHHHHHHHHHHhhhhcCh
Q 007918 478 VLEMINNP---HYLYRMTILRAISLLAPVMGS 506 (585)
Q Consensus 478 l~~~l~~~---~~~~R~~a~~~l~~l~~~~~~ 506 (585)
+..++.++ ...||..++..+..+...++.
T Consensus 103 L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~ 134 (152)
T 3rru_A 103 LVKLLNPRYNLPLDIQNRILNFIKTWSQGFPG 134 (152)
T ss_dssp TGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSS
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 44444432 246888888888887776543
No 157
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=61.61 E-value=97 Score=28.29 Aligned_cols=8 Identities=13% Similarity=0.173 Sum_probs=3.6
Q ss_pred HHhhcCCC
Q 007918 517 VINASKDR 524 (585)
Q Consensus 517 l~~~l~d~ 524 (585)
+..++.|+
T Consensus 275 l~~L~~d~ 282 (333)
T 3bwt_A 275 IQSLLNDS 282 (333)
T ss_dssp HHHHHTST
T ss_pred HHHHHcCC
Confidence 44444444
No 158
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=58.36 E-value=52 Score=28.36 Aligned_cols=68 Identities=10% Similarity=0.015 Sum_probs=44.2
Q ss_pred HHHHHHhccCCcHHHHHHHHH----HHHhhchhhCHHHHHHhHHHHHHHhhcCCChHHHHHHHHHhHHhhhh
Q 007918 319 LPCVKELSSDSSQHVRSALAS----VIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 386 (585)
Q Consensus 319 ~~~l~~~~~d~~~~vr~~a~~----~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 386 (585)
.+.+...+.|++.-+|+.++. .+..+......+...+.++..+...+.|++..|+.+...+|..+...
T Consensus 110 ~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~ 181 (235)
T 1t06_A 110 QDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAIS 181 (235)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhh
Confidence 455566667777666666665 33332211112345667777788888888888888888888777654
No 159
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=53.70 E-value=1.6e+02 Score=28.39 Aligned_cols=69 Identities=13% Similarity=0.102 Sum_probs=46.0
Q ss_pred hHHHHHHHHhc----------CCChHHHHHHHHHhHHHHHhhChhh-HHH--HHHHHHHHHccCCchHHHHHHHHHHHHH
Q 007918 395 SLLPAIVELAE----------DRHWRVRLAIIEYIPLLASQLGVGF-FDD--KLGALCMQWLQDKVYSIRDAAANNLKRL 461 (585)
Q Consensus 395 ~ll~~l~~~~~----------~~~~~~r~~~~~~l~~l~~~~~~~~-~~~--~l~~~l~~~l~d~~~~vr~~a~~~l~~l 461 (585)
.++..+.++++ +.++.+-.-|+.=++.++++.+... +.+ .....++.++.+++.+||..|+.+++.+
T Consensus 395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 35555666554 2356667777778888887765321 111 1356678888888899999888888887
Q ss_pred HH
Q 007918 462 AE 463 (585)
Q Consensus 462 ~~ 463 (585)
..
T Consensus 475 m~ 476 (480)
T 1ho8_A 475 IG 476 (480)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 160
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=52.05 E-value=2.3e+02 Score=29.69 Aligned_cols=144 Identities=10% Similarity=0.021 Sum_probs=63.9
Q ss_pred HHHHHHHHcc-CCchHHHHHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcch--HHHHHHHHH----HHHhhhhcChH
Q 007918 435 LGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHY--LYRMTILRA----ISLLAPVMGSE 507 (585)
Q Consensus 435 l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~--~~R~~a~~~----l~~l~~~~~~~ 507 (585)
++.-++.++. +.+..+-.....++..++..+.++.+ +.++..+.+...+... ..+.. ... +..++.. .++
T Consensus 520 f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if-~~~l~k~~~fv~~n~~~~a~~~v-~~L~~~~~~a~~~~-~P~ 596 (799)
T 1vsy_4 520 YVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIF-NYFASLLNRNFWSNDSFKEKDPN-YELVTIPLAALVRR-NNG 596 (799)
T ss_dssp HHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHH-HHHHHHHHHHHHSCSCCCSSSCC-THHHHHHHHHHHHH-CGG
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHHh-CHH
Confidence 3334444444 33444545555666666777777643 3344444444332211 11111 111 3333333 344
Q ss_pred HHHhcHHHHHHhhcC----CC------CchH--HHHHH----HHHHHHHhhhchH--HHHhhHHHHHHHhcC-CCCccHH
Q 007918 508 ITCSRLLPVVINASK----DR------VPNI--KFNVA----KVLQSLIPIVDQS--MVEKTIRPCLVELTE-DPDVDVR 568 (585)
Q Consensus 508 ~~~~~i~~~l~~~l~----d~------~~~v--R~~~~----~~l~~l~~~~~~~--~~~~~~~~~l~~l~~-D~~~~Vr 568 (585)
....++|.+..-+. +. ..++ |...+ .+|..++...|+. .+...+++.+..+.. .....+-
T Consensus 597 -~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~g~~lL~y~deL~~il~~~~~~~k~~~~~ 675 (799)
T 1vsy_4 597 -LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNCHESLLEYSDELITFMKYLYDNVTNPPLD 675 (799)
T ss_dssp -GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTTGGGGGTTHHHHHHHHHHHHHSCCCHHHH
T ss_pred -HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHHccHHHHHHHHHHHHHHhcCcchH
Confidence 45666666653222 11 1111 22222 2333333333433 445677777777653 3344333
Q ss_pred HHHHHHHHHHHHhh
Q 007918 569 FFATQAIQSIDHVM 582 (585)
Q Consensus 569 ~~a~~al~~l~~~l 582 (585)
..+.+.+..+-.-|
T Consensus 676 ~~~~~ll~~lL~sL 689 (799)
T 1vsy_4 676 VITSIVIHSALATL 689 (799)
T ss_dssp HHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 55666666554433
No 161
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=50.44 E-value=1.8e+02 Score=28.02 Aligned_cols=141 Identities=11% Similarity=0.142 Sum_probs=82.1
Q ss_pred hhHHHHHHHHhcCC------ChHHHHHHHHHhHHHHHhhChhhHHHHH-HHHHHHHccCCchHHHHHHHHHHHHHHHHhC
Q 007918 394 QSLLPAIVELAEDR------HWRVRLAIIEYIPLLASQLGVGFFDDKL-GALCMQWLQDKVYSIRDAAANNLKRLAEEFG 466 (585)
Q Consensus 394 ~~ll~~l~~~~~~~------~~~~r~~~~~~l~~l~~~~~~~~~~~~l-~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 466 (585)
+.++|.+.+.+.++ +|.. .++.+..+...+.-+.+.+.. +..+...+..++..+...+++.+. +...
T Consensus 72 ~~ll~~Ik~iL~~~~~~~~lD~~~---Li~Ll~~il~~~~Fd~VLevysve~i~~aL~S~~~~l~~~~ckVI~---~s~p 145 (500)
T 3vld_A 72 KPLLATIKRFLTSNVSYDSLNYDY---LLDVVDKLVPMADFDDVLEVYSAEDLVKALRSEIDPLKVAACRVIE---NSQP 145 (500)
T ss_dssp HHHHHHHHHHHHCSSCCTTCCHHH---HHHHHHHHHHHSCHHHHHHHSCHHHHHHHHTSSCHHHHHHHHHHHH---TCSS
T ss_pred HHHHHHHHHHHcCCccccccCHHH---HHHHHHHHHhcCCHHHHHHhCCHHHHHHHHhcCChHHHHHHHHHhc---ccCc
Confidence 46888888877332 3433 777788777776644433321 344667777788898888888876 2223
Q ss_pred HHHH-HhhhHHHHHhhhcCcchH---HHHHHHHHHHHhhhhcChHH----HHhcHHHHHHhhcCCCCchHHHHHHHHHHH
Q 007918 467 PEWA-MQHITPQVLEMINNPHYL---YRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQS 538 (585)
Q Consensus 467 ~~~~-~~~ll~~l~~~l~~~~~~---~R~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~ 538 (585)
.+.+ ...++..+++.+.+++.. +-.+.=.+++.+. +.+. ..+..+|.+...-+..++-+-...+..+..
T Consensus 146 k~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Ls---sdeLirrril~nnl~lL~~vK~~~~~i~~sRLLdll~i 222 (500)
T 3vld_A 146 KGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLS---TDELIRRRLFDNNLPYLVSVKGRMETVSFVRLIDFLTI 222 (500)
T ss_dssp GGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHT---TSHHHHHHHHTTTHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcC---chHHHHHHHHHHhHHHHHHHhcCCCceeHHHHHHHHHH
Confidence 3333 356888888888776544 3233333333332 2221 234456777666655555555556666665
Q ss_pred HHhhh
Q 007918 539 LIPIV 543 (585)
Q Consensus 539 l~~~~ 543 (585)
+....
T Consensus 223 l~~~i 227 (500)
T 3vld_A 223 EFQFI 227 (500)
T ss_dssp HHTTC
T ss_pred Hhccc
Confidence 55543
No 162
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=50.41 E-value=1.5e+02 Score=27.03 Aligned_cols=110 Identities=8% Similarity=0.028 Sum_probs=66.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHhHHHHHhh-Ch-hhH-HHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhCHHH--HH
Q 007918 397 LPAIVELAEDRHWRVRLAIIEYIPLLASQL-GV-GFF-DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AM 471 (585)
Q Consensus 397 l~~l~~~~~~~~~~~r~~~~~~l~~l~~~~-~~-~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~ 471 (585)
+..|.....+.+.....-++.++..+..+. |- ..+ .+.++..+..++......|-..|++.|..++..-...+ ..
T Consensus 162 L~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~ 241 (339)
T 3dad_A 162 LSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFI 241 (339)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHH
Confidence 344444555555566666666666665442 11 111 24456667777777888888889998888887642111 11
Q ss_pred -----------hhhHHHHHhhhc---CcchHHHHHHHHHHHHhhhhcCh
Q 007918 472 -----------QHITPQVLEMIN---NPHYLYRMTILRAISLLAPVMGS 506 (585)
Q Consensus 472 -----------~~ll~~l~~~l~---~~~~~~R~~a~~~l~~l~~~~~~ 506 (585)
...++.++..+. ..+..+...++..+..+....+.
T Consensus 242 ~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~apd 290 (339)
T 3dad_A 242 RAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAALPD 290 (339)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 112556666675 45777888888877777665553
No 163
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=47.64 E-value=85 Score=26.98 Aligned_cols=69 Identities=13% Similarity=-0.026 Sum_probs=42.5
Q ss_pred hHHHHHhhhcCcchHHHHHHHH----HHHHhhhhcChHHHHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHhh
Q 007918 474 ITPQVLEMINNPHYLYRMTILR----AISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI 542 (585)
Q Consensus 474 ll~~l~~~l~~~~~~~R~~a~~----~l~~l~~~~~~~~~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~~ 542 (585)
..+.+.....+++.-.|..++. .+..+......+...+.++..+...+.|+..-||.++.++|..+...
T Consensus 109 ~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~ 181 (235)
T 1t06_A 109 AQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAIS 181 (235)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhh
Confidence 4455666777777555555555 33332111112234567777777777888888888888888777655
No 164
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=47.26 E-value=2.7e+02 Score=29.14 Aligned_cols=35 Identities=11% Similarity=0.203 Sum_probs=23.8
Q ss_pred hHHHHHHHh---cC--CCCccHHHHHHHHHHHHHHhhcCC
Q 007918 551 TIRPCLVEL---TE--DPDVDVRFFATQAIQSIDHVMMSS 585 (585)
Q Consensus 551 ~~~~~l~~l---~~--D~~~~Vr~~a~~al~~l~~~l~~~ 585 (585)
.+.+.+.++ +. +++..-|....+.+..++.+++|.
T Consensus 749 ~~~~~l~~L~~l~~~~~~~~~~~de~~~~L~~i~~~lsG~ 788 (799)
T 1vsy_4 749 LSEYCINNVEELMKAPRHDSEYGDMIQKYVLVMTHTLSGS 788 (799)
T ss_dssp HHHHHHHHHHHSCSCCSSCSTTHHHHHHHHHHHHHHHSSG
T ss_pred HHHHHHHHHHHHhcccCCCcccHHHHHHHHHHHHHHHHHH
Confidence 344555554 33 456667888889999999888763
No 165
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=42.96 E-value=2.4e+02 Score=27.24 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=14.1
Q ss_pred HHHHHhhhcccchHHHHHHHHHHhccC
Q 007918 187 LGKFAATVEPAHLKTDIMSIFEDLTQD 213 (585)
Q Consensus 187 l~~l~~~~~~~~~~~~l~~~l~~l~~d 213 (585)
+..+......++..++++.++..++.+
T Consensus 82 ~l~lL~~~~~~d~vqYvL~Li~DlL~~ 108 (480)
T 1ho8_A 82 LIHLLSTSDNEDCKKSVQNLIAELLSS 108 (480)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHHhc
Confidence 333334444455556666666655555
No 166
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=41.32 E-value=2.1e+02 Score=26.22 Aligned_cols=6 Identities=33% Similarity=0.772 Sum_probs=2.3
Q ss_pred HhhcCC
Q 007918 363 SLLKDE 368 (585)
Q Consensus 363 ~~l~d~ 368 (585)
.+.+|.
T Consensus 210 ~L~~d~ 215 (351)
T 3gvo_A 210 QLVQDQ 215 (351)
T ss_dssp HHHTST
T ss_pred hcCCCc
Confidence 333333
No 167
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=41.32 E-value=2.1e+02 Score=26.22 Aligned_cols=6 Identities=33% Similarity=0.789 Sum_probs=2.3
Q ss_pred HhccCC
Q 007918 285 RLLRDN 290 (585)
Q Consensus 285 ~ll~d~ 290 (585)
.+..|+
T Consensus 210 ~L~~d~ 215 (351)
T 3gvo_A 210 QLVQDQ 215 (351)
T ss_dssp HHHTST
T ss_pred hcCCCc
Confidence 333343
No 168
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.60 E-value=88 Score=21.27 Aligned_cols=36 Identities=11% Similarity=0.096 Sum_probs=29.2
Q ss_pred HHhhHHHHHHHhcCCCCccHHHHHHHHHHHHHHhhc
Q 007918 548 VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 583 (585)
Q Consensus 548 ~~~~~~~~l~~l~~D~~~~Vr~~a~~al~~l~~~l~ 583 (585)
..+.++-.|.++..|.++.+|..-..|+..+..++.
T Consensus 42 eLq~Li~~LDev~~~~NpcIReaRRrAV~EvQ~lit 77 (89)
T 2d9d_A 42 ELQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLIT 77 (89)
T ss_dssp HHHHHHHHHGGGCSCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHH
Confidence 345677777788889999999999999988887753
No 169
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=38.62 E-value=2.5e+02 Score=26.26 Aligned_cols=178 Identities=10% Similarity=0.058 Sum_probs=82.2
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHhHHhhhhhc-hh-HHhhhHHHHHHHHhcCCC-hHHHHHHHHHhHHHHHhhC---hhh
Q 007918 357 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-ID-LLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLG---VGF 430 (585)
Q Consensus 357 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~-~~~~~ll~~l~~~~~~~~-~~~r~~~~~~l~~l~~~~~---~~~ 430 (585)
++-.+..++..+++.=|......|..+...+. .. .+...+-..+..+..+.. ..--...++.++.+.+... .+.
T Consensus 175 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKee 254 (392)
T 2jak_A 175 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE 254 (392)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHH
Confidence 33344455566666666666666666554332 11 111222233333332211 1111235555555555442 112
Q ss_pred HHHHHHHHHHHHccCCchHHH-HHHHHHHHHHHHHhCHHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHHH
Q 007918 431 FDDKLGALCMQWLQDKVYSIR-DAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT 509 (585)
Q Consensus 431 ~~~~l~~~l~~~l~d~~~~vr-~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~~ 509 (585)
....+...++.+...+...+= .....++..++.. .+. ....++..+++.---.+.......+.-+..+.+.++++.+
T Consensus 255 hk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK-Dp~-L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f 332 (392)
T 2jak_A 255 HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-DST-LTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEF 332 (392)
T ss_dssp HHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHH-CGG-GHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhc-Cch-hHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHH
Confidence 222223333333333322211 1222333333322 111 1233444444432223444455677777888888887765
Q ss_pred ---HhcHHHHHHhhcCCCCchHHHHHHHHH
Q 007918 510 ---CSRLLPVVINASKDRVPNIKFNVAKVL 536 (585)
Q Consensus 510 ---~~~i~~~l~~~l~d~~~~vR~~~~~~l 536 (585)
...+...+.+++++++..|-..|+..+
T Consensus 333 ~~i~~~lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 333 VKIMEPLFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 345556677788888887777666554
No 170
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=37.74 E-value=1.4e+02 Score=23.18 Aligned_cols=71 Identities=8% Similarity=0.028 Sum_probs=49.5
Q ss_pred HhhhHHHHHhhhcCcchHHHHHHHHHHHHhhhhcChHH---HHhcHHHHHHhhcCCCCchHHHHHHHHHHHHHh
Q 007918 471 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI---TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP 541 (585)
Q Consensus 471 ~~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~~~~~~---~~~~i~~~l~~~l~d~~~~vR~~~~~~l~~l~~ 541 (585)
.+.++..+.+.+.......+..++..+..+++++|..+ |...+.+.+.......++.+|....+.+...-.
T Consensus 41 a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~ 114 (144)
T 1sz9_A 41 AQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLN 114 (144)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhC
Confidence 34566666666666667888888999999988887653 345555566665555678888888887777653
No 171
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=37.62 E-value=1.3e+02 Score=22.78 Aligned_cols=58 Identities=3% Similarity=0.034 Sum_probs=33.3
Q ss_pred HHhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhh
Q 007918 362 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 426 (585)
Q Consensus 362 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~ 426 (585)
+..|+.+.+.+...+..++...-. .+.++..+.+.+.......|...+..+..+....
T Consensus 14 L~~L~~s~~sI~~~s~w~l~h~~~-------a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns 71 (132)
T 4flb_A 14 FQSVTNTMESIQGLSSWCIENKKH-------HSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNC 71 (132)
T ss_dssp HHHCCSSHHHHHHHHHHHHHTGGG-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCcccHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Confidence 334455545555555555554321 1345555555555566667777777777777655
No 172
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=34.16 E-value=11 Score=34.90 Aligned_cols=97 Identities=8% Similarity=0.068 Sum_probs=47.3
Q ss_pred CcchHHHHHHHHHHHHhhhhcC--hHHH-----HhcHHHHHHhhc----CCCCchHHHHHHHHHHHHHhhhchH----HH
Q 007918 484 NPHYLYRMTILRAISLLAPVMG--SEIT-----CSRLLPVVINAS----KDRVPNIKFNVAKVLQSLIPIVDQS----MV 548 (585)
Q Consensus 484 ~~~~~~R~~a~~~l~~l~~~~~--~~~~-----~~~i~~~l~~~l----~d~~~~vR~~~~~~l~~l~~~~~~~----~~ 548 (585)
+..+..+..+++++.++...-. .... .+.++..+...+ ...+.++|.+++..+.++....... ..
T Consensus 210 ~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~~el 289 (362)
T 3l3f_X 210 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLEL 289 (362)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSCTTH
T ss_pred CCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccchHHH
Confidence 4456677777777777654322 2211 112222222111 1224567777777776665433221 12
Q ss_pred HhhHHHHHHHhc--C---CCCccHHHHHHHHHHHHHH
Q 007918 549 EKTIRPCLVELT--E---DPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 549 ~~~~~~~l~~l~--~---D~~~~Vr~~a~~al~~l~~ 580 (585)
...+..++.... . ..|++..+.+.-|++.+..
T Consensus 290 ~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 290 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp HHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 223333333210 1 2477777777777777763
No 173
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=32.04 E-value=1.8e+02 Score=22.61 Aligned_cols=69 Identities=17% Similarity=0.090 Sum_probs=42.9
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhhChhh---HHHHHHHHHHHHccCCchHHHHHHHHHHHHHH
Q 007918 394 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLA 462 (585)
Q Consensus 394 ~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~ 462 (585)
+.+...+.+.+....+..+..++..+..+.+..|..+ |...+.+.+.......+..+|....+.+...-
T Consensus 42 ~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~ 113 (144)
T 1sz9_A 42 QYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWL 113 (144)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 4566666666666778888889999998888887543 22233344444444445566666665555554
No 174
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=29.33 E-value=18 Score=34.23 Aligned_cols=97 Identities=8% Similarity=0.087 Sum_probs=48.5
Q ss_pred CcchHHHHHHHHHHHHhhhhcC--hHHHH-hcHHHHHHhhcC--------CCCchHHHHHHHHHHHHHhhhchH----HH
Q 007918 484 NPHYLYRMTILRAISLLAPVMG--SEITC-SRLLPVVINASK--------DRVPNIKFNVAKVLQSLIPIVDQS----MV 548 (585)
Q Consensus 484 ~~~~~~R~~a~~~l~~l~~~~~--~~~~~-~~i~~~l~~~l~--------d~~~~vR~~~~~~l~~l~~~~~~~----~~ 548 (585)
+..+..+..+++++.++...-. ..... +.+...+++.+. +.+.++|.+++..+.++....... ..
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~~el 352 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLEL 352 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTH
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccchHHH
Confidence 4456677777777777765322 22111 112233333221 224567777777777665433221 12
Q ss_pred HhhHHHHHHHhcC-----CCCccHHHHHHHHHHHHHH
Q 007918 549 EKTIRPCLVELTE-----DPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 549 ~~~~~~~l~~l~~-----D~~~~Vr~~a~~al~~l~~ 580 (585)
...+..++..... ..|++..+.+.-|++.+..
T Consensus 353 ~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 353 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp HHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 2233344432111 2377777777777777763
No 175
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=27.65 E-value=2e+02 Score=21.76 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=8.0
Q ss_pred CCchHHHHHHHHHHHHHh
Q 007918 524 RVPNIKFNVAKVLQSLIP 541 (585)
Q Consensus 524 ~~~~vR~~~~~~l~~l~~ 541 (585)
..++-|...+..+-.++.
T Consensus 52 ~~~~~KL~~LYL~ndIl~ 69 (132)
T 4flb_A 52 SAYPHRLNLFYLANDVIQ 69 (132)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHH
Confidence 334444444444444443
No 176
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=27.61 E-value=1.7e+02 Score=25.49 Aligned_cols=97 Identities=9% Similarity=0.091 Sum_probs=56.6
Q ss_pred CcchHHHHHHHHHHHHhhhhc--ChHHH-----HhcHHHHHHhhcCC----CCchHHHHHHHHHHHHHhhhch----HHH
Q 007918 484 NPHYLYRMTILRAISLLAPVM--GSEIT-----CSRLLPVVINASKD----RVPNIKFNVAKVLQSLIPIVDQ----SMV 548 (585)
Q Consensus 484 ~~~~~~R~~a~~~l~~l~~~~--~~~~~-----~~~i~~~l~~~l~d----~~~~vR~~~~~~l~~l~~~~~~----~~~ 548 (585)
+.++..+..+++++.++...- |...+ .+.++..+...+.| ++.++|.+++..+.++.-.... ...
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~e~ 180 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLEL 180 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCTTH
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccchHHH
Confidence 456788889999998887643 33222 12233333332333 3678888888888887654322 122
Q ss_pred HhhHHHHHHHhcC-----CCCccHHHHHHHHHHHHHH
Q 007918 549 EKTIRPCLVELTE-----DPDVDVRFFATQAIQSIDH 580 (585)
Q Consensus 549 ~~~~~~~l~~l~~-----D~~~~Vr~~a~~al~~l~~ 580 (585)
...+...+..... ..|++..+.+..|++.+..
T Consensus 181 ~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 181 LPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp HHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 3345555544211 2377888888888887763
No 177
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=27.05 E-value=3.9e+02 Score=24.92 Aligned_cols=30 Identities=7% Similarity=-0.036 Sum_probs=15.3
Q ss_pred hhHHHHHhhhcCcchHHHHHHHHHHHHhhh
Q 007918 473 HITPQVLEMINNPHYLYRMTILRAISLLAP 502 (585)
Q Consensus 473 ~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~ 502 (585)
..+..+...+.+++..+|..+++.+..++.
T Consensus 162 ~~i~~l~~~L~s~~~~~~~~aleLL~~lc~ 191 (383)
T 3eg5_B 162 EGILLLVRAMDPAVPNMMIDAAKLLSALCI 191 (383)
T ss_dssp SHHHHHHHTCCTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHHHh
Confidence 344444444555555555555555555444
No 178
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=26.90 E-value=3.5e+02 Score=24.40 Aligned_cols=12 Identities=8% Similarity=-0.047 Sum_probs=5.8
Q ss_pred HHHHHHHhhcCc
Q 007918 126 YIPLVKRLAAGE 137 (585)
Q Consensus 126 l~~~l~~l~~~~ 137 (585)
+.|.+.++..|.
T Consensus 47 l~~~~~~L~~d~ 58 (333)
T 3bwt_A 47 TKDYTVELMTDS 58 (333)
T ss_dssp HGGGHHHHHTST
T ss_pred HHHHHHHHhcCc
Confidence 344444555554
No 179
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=23.13 E-value=2.7e+02 Score=21.81 Aligned_cols=22 Identities=5% Similarity=0.004 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHhCCcc
Q 007918 253 WRVRYMVANQLYELCEAVGPEP 274 (585)
Q Consensus 253 ~~vR~~~~~~l~~l~~~~~~~~ 274 (585)
..||..+++.+...+..++.+.
T Consensus 115 ~~Vk~kil~li~~Wa~~F~~~p 136 (152)
T 3rru_A 115 LDIQNRILNFIKTWSQGFPGGV 136 (152)
T ss_dssp HHHHHHHHHHHHHHHTCCSSSC
T ss_pred HHHHHHHHHHHHHHHHHhCCCC
Confidence 3566666666666665555433
No 180
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=22.89 E-value=2.5e+02 Score=21.25 Aligned_cols=57 Identities=7% Similarity=0.007 Sum_probs=31.6
Q ss_pred HhhcCCChHHHHHHHHHhHHhhhhhchhHHhhhHHHHHHHHhcCCChHHHHHHHHHhHHHHHhh
Q 007918 363 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL 426 (585)
Q Consensus 363 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~~~~~l~~l~~~~ 426 (585)
.-|+.+.+.+...+..++...-. .+.+...+.+.+.......|...+..+..+....
T Consensus 14 ~~L~~s~~sI~~~s~w~l~~~~~-------a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns 70 (135)
T 4fu3_A 14 SELSNSQQSVQTLSLWLIHHRKH-------AGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNS 70 (135)
T ss_dssp HHCCSSTTHHHHHHHHHHHTGGG-------HHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 33455556666666666654321 1345555555554444456777777777765543
No 181
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=21.44 E-value=2.2e+02 Score=20.06 Aligned_cols=70 Identities=14% Similarity=0.171 Sum_probs=37.1
Q ss_pred HHhcHHHHHHhhcCCC--CchHHHHHHHHHHHHHhh-hchHHHHhhHHHHHHHhcCCCCccH--HHHHHHHHHHH
Q 007918 509 TCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPI-VDQSMVEKTIRPCLVELTEDPDVDV--RFFATQAIQSI 578 (585)
Q Consensus 509 ~~~~i~~~l~~~l~d~--~~~vR~~~~~~l~~l~~~-~~~~~~~~~~~~~l~~l~~D~~~~V--r~~a~~al~~l 578 (585)
....++..|....+|. ..++|.++-.+...+... ..+.......+..|....+||+-.+ |......++.+
T Consensus 15 ~ik~~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~~~~~vRAAtAIs~LDeISnDPNmP~htRT~IW~ivS~L 89 (94)
T 2qzg_A 15 KLKNISSMLEEIVEDTTVPRNIRAAADNAKNALHNEEQELIVRSATAIQYLDDISEDPNMPIHTRTQIWGIVSEL 89 (94)
T ss_dssp HHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Confidence 3344444555555554 356777776666666433 2223344556667777777776432 33333444444
No 182
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=20.79 E-value=3.9e+02 Score=22.67 Aligned_cols=55 Identities=11% Similarity=0.101 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHH-hCHHHHH--hhhHHHHHhhhcCcchHHHHHHHHHHHHhhhh
Q 007918 449 SIRDAAANNLKRLAEE-FGPEWAM--QHITPQVLEMINNPHYLYRMTILRAISLLAPV 503 (585)
Q Consensus 449 ~vr~~a~~~l~~l~~~-~~~~~~~--~~ll~~l~~~l~~~~~~~R~~a~~~l~~l~~~ 503 (585)
......+.++..++.. .|-+... +..+..+...+..++..+|..+++.+..++..
T Consensus 69 ~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~ 126 (233)
T 2f31_A 69 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCIL 126 (233)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 3444455555555431 1222221 33455555556666666666666666665543
No 183
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=20.54 E-value=4.2e+02 Score=24.40 Aligned_cols=47 Identities=15% Similarity=0.129 Sum_probs=22.4
Q ss_pred chHHHHHHhccCChHHHHHHHHHHHHHHHHhhCHH---HHHHhhHHHHHHhccCCc
Q 007918 278 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSS 330 (585)
Q Consensus 278 ~l~~~l~~ll~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~~~~d~~ 330 (585)
++...+.++..|. .+++.+....+..+++ .+.+++.+.+..+..|..
T Consensus 28 ~i~g~i~~l~~d~------~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~ 77 (369)
T 3k49_A 28 DIFGHSLEFCKDQ------HGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVF 77 (369)
T ss_dssp GGTTCHHHHHTSH------HHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTT
T ss_pred HHHHHHHHHHcCC------cchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcc
Confidence 3444445555552 2334444444443332 233455566666666654
No 184
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=20.47 E-value=5e+02 Score=23.86 Aligned_cols=14 Identities=7% Similarity=0.223 Sum_probs=6.4
Q ss_pred HhhhHhhcCCCChH
Q 007918 146 CGLFHIAYPSAPDI 159 (585)
Q Consensus 146 ~~~l~~~~~~~~~~ 159 (585)
+..+-......+++
T Consensus 43 sR~lQ~~l~~~~~~ 56 (369)
T 3k49_A 43 SRFIQRELATSPAS 56 (369)
T ss_dssp HHHHHHHHTTCCHH
T ss_pred hHHHHHHhccCCHH
Confidence 34444444544443
Done!