Query 007920
Match_columns 585
No_of_seqs 190 out of 399
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 13:46:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007920.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007920hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ap5_A GDP-fucose protein O-fu 99.2 1.3E-10 4.4E-15 121.2 15.1 73 15-91 19-99 (408)
2 3zy2_A Putative GDP-fucose pro 98.4 9.6E-07 3.3E-11 92.3 11.5 61 16-79 6-67 (362)
3 2de0_X Alpha-(1,6)-fucosyltran 94.5 1.2 4.2E-05 48.7 17.6 203 16-297 143-362 (526)
4 2hhc_A NODZ, nodulation fucosy 69.0 5.4 0.00018 39.8 5.3 40 17-56 3-42 (330)
5 3l32_A Phosphoprotein; antipar 32.3 21 0.00073 27.3 1.9 26 167-193 2-27 (45)
6 2hhc_A NODZ, nodulation fucosy 21.9 41 0.0014 33.4 2.4 35 165-200 145-179 (330)
7 1p3q_Q VPS9P, vacuolar protein 19.6 35 0.0012 26.9 1.1 14 285-298 14-27 (54)
8 1l2m_A REP protein; A+B fold, 19.5 90 0.0031 28.0 3.9 26 250-276 17-42 (118)
9 2eqr_A N-COR1, N-COR, nuclear 15.6 88 0.003 24.2 2.5 18 248-265 10-27 (61)
10 1wgl_A TOLL-interacting protei 13.8 50 0.0017 26.1 0.6 15 284-298 10-24 (59)
No 1
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=99.21 E-value=1.3e-10 Score=121.19 Aligned_cols=73 Identities=14% Similarity=0.233 Sum_probs=52.3
Q ss_pred CCCCceEEEEEc-C-ChhhHHHHHHHHHHHHHHhcce----EeeccccccccccCCC--CCCCCCCccccHHHHHHHccc
Q 007920 15 EENNGFIYAKVF-G-GFEKIRSSICDLVTISRLLNAT----LVIPEIQESLRSKGIS--YKFKSFSYLYNEEQFIASLAR 86 (585)
Q Consensus 15 ~~snGYL~V~an-G-GLNQqR~~IcDaVaVARiLNAT----LVIP~Ld~~s~~~~d~--sd~s~F~DIFD~dhFI~sL~~ 86 (585)
...++||+-..| | |+|.||...-.|.++|+.||.| ||||-...-.-|.... +..-.|++.||++++ +.
T Consensus 19 ~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~~ 94 (408)
T 4ap5_A 19 ASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----NK 94 (408)
T ss_dssp -CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----HT
T ss_pred ccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----Hh
Confidence 467899998664 4 8999999999999999999999 9999664211022221 112359999999864 44
Q ss_pred cceee
Q 007920 87 DVIIV 91 (585)
Q Consensus 87 DVrIV 91 (585)
.|+||
T Consensus 95 ~vpVI 99 (408)
T 4ap5_A 95 NIPVI 99 (408)
T ss_dssp TSCEE
T ss_pred hCCee
Confidence 55555
No 2
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=98.42 E-value=9.6e-07 Score=92.28 Aligned_cols=61 Identities=23% Similarity=0.423 Sum_probs=47.2
Q ss_pred CCCceEEE-EEcCChhhHHHHHHHHHHHHHHhcceEeeccccccccccCCCCCCCCCCccccHHH
Q 007920 16 ENNGFIYA-KVFGGFEKIRSSICDLVTISRLLNATLVIPEIQESLRSKGISYKFKSFSYLYNEEQ 79 (585)
Q Consensus 16 ~snGYL~V-~anGGLNQqR~~IcDaVaVARiLNATLVIP~Ld~~s~~~~d~sd~s~F~DIFD~dh 79 (585)
.+||||+- -|-|-+.+|-...--+.+.|+.||-|||||-+-.-.. .. +..-.|++.|+++.
T Consensus 6 d~~Gyi~yCPCMGRFGNQadhfLG~LafAk~lnRTLvlPpwi~y~~--~~-~~~vpf~~yF~v~~ 67 (362)
T 3zy2_A 6 DPNGYIVFCPCMGRFGNQVDQFLGVLAFAKALDRTLVLPNFIEFKH--PE-TKMIPFEFLFQVGT 67 (362)
T ss_dssp CTTCEEEECCCSSSHHHHHHHHHHHHHHHHHHTCEEECCCEEECSS--SS-CEEECHHHHBCHHH
T ss_pred CCCccEEeCCCcCccccHHHHHHHHHHHHHhhCceEecCccccccC--Cc-ccccchhheeecch
Confidence 35999988 8999999999999999999999999999997753210 11 22234888888764
No 3
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=94.47 E-value=1.2 Score=48.67 Aligned_cols=203 Identities=14% Similarity=0.161 Sum_probs=107.3
Q ss_pred CCCceEEEEE--cCChhhHHHHHHHHHHHHHHhcceEeeccccccccccCCCCCCCCCCccccHHHHHHHccccceeecc
Q 007920 16 ENNGFIYAKV--FGGFEKIRSSICDLVTISRLLNATLVIPEIQESLRSKGISYKFKSFSYLYNEEQFIASLARDVIIVKS 93 (585)
Q Consensus 16 ~snGYL~V~a--nGGLNQqR~~IcDaVaVARiLNATLVIP~Ld~~s~~~~d~sd~s~F~DIFD~dhFI~sL~~DVrIVk~ 93 (585)
.+..||+... ..|+--+-..++=+.++|-.+|-||||-.-. |... ...|+++|.. + ....
T Consensus 143 s~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtliidd~~-----w~Y~--~g~w~~yF~P--~----s~~C----- 204 (526)
T 2de0_X 143 SKAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQN-----WRYA--TGGWETVFRP--V----SETC----- 204 (526)
T ss_dssp GGSCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEEEEECTT-----CSSC--TTCGGGTBCC--S----CSSC-----
T ss_pred CCCCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEEEEECCC-----CCcC--CCCHHHhhhC--c----Cccc-----
Confidence 4568999876 5799998888999999999999999993321 2221 1357777763 1 1110
Q ss_pred CchhHHhhcccCCCCccCCCCCCChhHHHHhhhhhhhccceEEEeecCC-----cccccCCCCC-hhHHhhhh-------
Q 007920 94 LPENLKAARKRNEFPTFKPKVSTSPNYYIQEVLPKLKRTQVIGLILTDG-----GCLQSILPPS-MSELQRLR------- 160 (585)
Q Consensus 94 LP~~l~~~~~~~~i~~~~vp~~ss~~yY~~~VlP~L~k~~VI~l~~~d~-----rla~~~LP~~-~~eiQrLR------- 160 (585)
.|. +......|..... -..+.||.+...++ .+++-.+|.. ...+++|.
T Consensus 205 ~~~-----------~~~~~~~w~~~~~--------~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~dp~~w~ 265 (526)
T 2de0_X 205 TDR-----------SGISTGHWSGEVK--------DKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWW 265 (526)
T ss_dssp CCC-----------CCSCCCBCCCTTG--------GGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCSCHHHHH
T ss_pred cCC-----------CccccCCCCCccc--------CCCcceEEeeccccccccccccccccchhHHHHHHhccCCcHHHH
Confidence 000 0000011211100 12455665443321 1111123321 12334442
Q ss_pred --hhccccccccchHHHHHHHHHHHHHHhcCCCeEEeccchhhhhhhhhccccccchhHHHHHHHHHHHhhhcccccccc
Q 007920 161 --CRVAFHALQFRPEIEILGRLMVERLRAWGQPFLAYHPGLVRETLAYHGCAELFQDVHTELIQYRRAQMIRQGIVNEEL 238 (585)
Q Consensus 161 --Crvnf~ALrF~p~Ie~LG~~LV~RLR~~g~pyIALHLRfEkDMLAfSgC~~~~~~~~~el~~~rr~~~~k~~~~k~~~ 238 (585)
+.+.| -+|+.+.|++.-+.+.+.+.- ++|.|+||.|-- |-++.- ..+-.. .+-++.-..+. .
T Consensus 266 ~~q~~~y-l~rP~~~i~~~I~~~~~~l~~-~~piVGVHIRrG-Dk~~~E---~~~~~~-~~Y~~~v~~~~------~--- 329 (526)
T 2de0_X 266 VSQFVKY-LIRPQPWLEKEIEEATKKLGF-KHPVIGVHVRRT-DKVGTE---AAFHPI-EEYMVHVEEHF------Q--- 329 (526)
T ss_dssp HHHHHHH-HTCBCHHHHHHHHHHHHHHTC-CSSEEEEEECCC------C---CCSCSH-HHHHHHHHHHH------H---
T ss_pred HHHHHHH-HcCCCHHHHHHHHHHHHHhCC-CCCEEEEEEeCC-CCCccc---cccCCH-HHHHHHHHHHH------H---
Confidence 11111 378999999988888877654 579999999962 433211 001110 01111001110 0
Q ss_pred ccCchhhccCCCCCCCHHHHHHHHHhcCCCCCceEEEecccccCCccchhhHHHhccCc
Q 007920 239 SVDSHLRRDNGSCPLMPEEVGILLRAMGYPPKTIIYLAGSETFGGHRVLIPLRAMFSNL 297 (585)
Q Consensus 239 ~i~~~~~R~~G~CPLTPeEVgl~LrALGf~~~T~IYlAaGeIyGG~~~m~pL~~~FPnl 297 (585)
.|+....+..+.||||+.+ ...++-+++.||+.
T Consensus 330 ----------------------~l~~~~~~~~~~ifLATDD----p~v~~e~k~~~p~~ 362 (526)
T 2de0_X 330 ----------------------LLARRMQVDKKRVYLATDD----PSLLKEAKTKYPNY 362 (526)
T ss_dssp ----------------------HHHTTSCCSSCEEEEEESC----HHHHHHHHHHCTTS
T ss_pred ----------------------HHHhhcCCCCCeEEEEcCC----HHHHHHHHHhCCCC
Confidence 1222246778999999998 46678888899986
No 4
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=68.97 E-value=5.4 Score=39.81 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=35.6
Q ss_pred CCceEEEEEcCChhhHHHHHHHHHHHHHHhcceEeecccc
Q 007920 17 NNGFIYAKVFGGFEKIRSSICDLVTISRLLNATLVIPEIQ 56 (585)
Q Consensus 17 snGYL~V~anGGLNQqR~~IcDaVaVARiLNATLVIP~Ld 56 (585)
+..||++...|||.+|=-+++.|.++|.+.|.+|+|--..
T Consensus 3 ~~r~iv~~~~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~ 42 (330)
T 2hhc_A 3 KERFVISRRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRG 42 (330)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHHTCEEEEECBT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHHHHHHhCCEEEEECCC
Confidence 5679999999999888889999999999999999885443
No 5
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=32.31 E-value=21 Score=27.28 Aligned_cols=26 Identities=31% Similarity=0.649 Sum_probs=20.6
Q ss_pred ccccchHHHHHHHHHHHHHHhcCCCeE
Q 007920 167 ALQFRPEIEILGRLMVERLRAWGQPFL 193 (585)
Q Consensus 167 ALrF~p~Ie~LG~~LV~RLR~~g~pyI 193 (585)
|+-|+.-+.++|.++|.||++ |..|.
T Consensus 2 ~vpfQs~LD~vG~qiVrkmKt-Ge~Ff 27 (45)
T 3l32_A 2 NLLFQSYLDNVGVQIVRQMRS-GERFL 27 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT-TCCHH
T ss_pred CccHHHHHHHHHHHHHHHHHc-cccHH
Confidence 456788899999999999998 34453
No 6
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=21.89 E-value=41 Score=33.38 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=26.7
Q ss_pred ccccccchHHHHHHHHHHHHHHhcCCCeEEeccchh
Q 007920 165 FHALQFRPEIEILGRLMVERLRAWGQPFLAYHPGLV 200 (585)
Q Consensus 165 f~ALrF~p~Ie~LG~~LV~RLR~~g~pyIALHLRfE 200 (585)
|.-|+++++|++..+.+.+.+-. +.++|+||.|.=
T Consensus 145 ~~yl~p~~~i~~~i~~~~~~~~~-~~~~VGVHIRrg 179 (330)
T 2hhc_A 145 FRNIKLRSEIRARIDALYEEHFS-GHSIIGVHVRHG 179 (330)
T ss_dssp HHHSCBCHHHHHHHHHHHHHHTT-TSEEEEEEECC-
T ss_pred HhcCCccHHHHHHHHHHHHHhcc-CCceEEEEEecC
Confidence 47789999999988887765322 358999999964
No 7
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=19.62 E-value=35 Score=26.93 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=11.5
Q ss_pred cchhhHHHhccCcc
Q 007920 285 RVLIPLRAMFSNLV 298 (585)
Q Consensus 285 ~~m~pL~~~FPnl~ 298 (585)
..+.-|++|||++.
T Consensus 14 ~~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 14 DTLNTLQNMFPDMD 27 (54)
T ss_dssp HHHHHHHHHSTTSC
T ss_pred HHHHHHHHHcccCC
Confidence 35788999999984
No 8
>1l2m_A REP protein; A+B fold, RBD-like fold, viral protein; NMR {Tomato yellow leaf curl sardiniavirus} SCOP: d.89.1.4 PDB: 1l5i_A
Probab=19.47 E-value=90 Score=28.00 Aligned_cols=26 Identities=15% Similarity=0.378 Sum_probs=21.0
Q ss_pred CCCCCHHHHHHHHHhcCCCCCceEEEe
Q 007920 250 SCPLMPEEVGILLRAMGYPPKTIIYLA 276 (585)
Q Consensus 250 ~CPLTPeEVgl~LrALGf~~~T~IYlA 276 (585)
.||||+||+...|+.|--+.+ ..||.
T Consensus 17 ~c~l~Ke~~l~~l~~l~~p~~-~~yi~ 42 (118)
T 1l2m_A 17 KCDLTKENALSQITNLQTPTN-KLFIK 42 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSC-EEEEE
T ss_pred CCCCCHHHHHHHHHhhcCCcc-eeeee
Confidence 799999999999999986654 44443
No 9
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=15.57 E-value=88 Score=24.23 Aligned_cols=18 Identities=11% Similarity=-0.093 Sum_probs=16.6
Q ss_pred CCCCCCCHHHHHHHHHhc
Q 007920 248 NGSCPLMPEEVGILLRAM 265 (585)
Q Consensus 248 ~G~CPLTPeEVgl~LrAL 265 (585)
+...|.|++|..+|++++
T Consensus 10 ~~~~~WT~eE~~~F~~~~ 27 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKF 27 (61)
T ss_dssp SCCCSCCHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHH
Confidence 677899999999999998
No 10
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=13.78 E-value=50 Score=26.10 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=12.5
Q ss_pred ccchhhHHHhccCcc
Q 007920 284 HRVLIPLRAMFSNLV 298 (585)
Q Consensus 284 ~~~m~pL~~~FPnl~ 298 (585)
+..++-|++|||++.
T Consensus 10 ee~l~~L~emFP~ld 24 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMD 24 (59)
T ss_dssp HHHHHHHHHHCSSSC
T ss_pred HHHHHHHHHHCCCCC
Confidence 456889999999983
Done!