Query 007920
Match_columns 585
No_of_seqs 190 out of 399
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 13:46:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007920.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007920hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1l5ia_ d.89.1.4 (A:) DNA-bind 33.9 16 0.0012 30.8 3.9 26 250-276 17-42 (118)
2 d1oqya2 a.5.2.1 (A:317-360) DN 23.0 7.3 0.00053 28.0 -0.3 26 254-279 1-30 (44)
3 d2ihoa2 d.3.1.18 (A:156-293) A 21.9 8.9 0.00065 32.9 -0.0 38 50-88 32-71 (138)
4 d1wgla_ a.5.2.4 (A:) Toll-inte 18.2 16 0.0011 27.5 0.6 16 284-299 10-25 (59)
5 d1mn3a_ a.5.2.4 (A:) Vacuolar 18.1 15 0.0011 27.1 0.6 14 285-298 14-27 (54)
6 d1sfsa_ c.1.8.8 (A:) Unnamed h 14.6 33 0.0024 31.3 2.1 19 261-279 84-102 (213)
7 d1r03a_ a.25.1.1 (A:) (Apo)fer 14.2 23 0.0017 30.3 0.8 59 160-224 2-61 (171)
8 d1fcda2 c.3.1.5 (A:115-255) Fl 13.1 55 0.004 27.0 2.9 51 249-299 45-99 (141)
9 d1jjcb2 a.6.1.1 (B:400-474) Do 12.6 41 0.003 25.4 1.8 23 245-268 13-35 (75)
10 d2f3na1 a.60.1.2 (A:2-65) Sh3 10.7 54 0.0039 23.2 1.8 24 254-277 5-28 (64)
No 1
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=33.94 E-value=16 Score=30.82 Aligned_cols=26 Identities=15% Similarity=0.406 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHhcCCCCCceEEEe
Q 007920 250 SCPLMPEEVGILLRAMGYPPKTIIYLA 276 (585)
Q Consensus 250 ~CPLTPeEVgl~LrALGf~~~T~IYlA 276 (585)
+||||+||+.-.|+.|==+.+.. ||.
T Consensus 17 ~C~l~ke~~l~~l~~l~~p~~~~-~i~ 42 (118)
T d1l5ia_ 17 KCDLTKENALSQITNLQTPTNKL-FIK 42 (118)
T ss_dssp TCCCCHHHHHHHHHHCCCSSCEE-EEE
T ss_pred CCCCCHHHHHHHHHHhcCCccee-EEE
Confidence 79999999999999998766664 444
No 2
>d1oqya2 a.5.2.1 (A:317-360) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.95 E-value=7.3 Score=27.99 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=19.0
Q ss_pred CHHHHH--HHHHhcCCCCCc--eEEEeccc
Q 007920 254 MPEEVG--ILLRAMGYPPKT--IIYLAGSE 279 (585)
Q Consensus 254 TPeEVg--l~LrALGf~~~T--~IYlAaGe 279 (585)
||+|.. -=|.+|||+.+. ..|+|-.+
T Consensus 1 T~ee~~aIeRL~~LGF~r~~viqay~ACdK 30 (44)
T d1oqya2 1 TPQEKEAIERLKALGFPESLVIQAYFACEK 30 (44)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSS
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 566543 348899999998 46888766
No 3
>d2ihoa2 d.3.1.18 (A:156-293) Agglutinin MOA {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}
Probab=21.94 E-value=8.9 Score=32.90 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=28.0
Q ss_pred EeeccccccccccCCCC--CCCCCCccccHHHHHHHccccc
Q 007920 50 LVIPEIQESLRSKGISY--KFKSFSYLYNEEQFIASLARDV 88 (585)
Q Consensus 50 LVIP~Ld~~s~~~~d~s--d~s~F~DIFD~dhFI~sL~~DV 88 (585)
||||...-+++| .+|- ....=+.|||-|.|--..|.-|
T Consensus 32 LVLp~~~~s~IW-k~SGL~~t~~R~~I~D~DdFA~~~KaAv 71 (138)
T d2ihoa2 32 LVLPNATFTQIW-KDSGLPGSKWREQIYDCDDFAIAMKAAV 71 (138)
T ss_dssp ECCCHHHHHHHH-HTTTCTTCCCBTTTBCHHHHHHHHHHHH
T ss_pred EEechHHHHHHH-hccCCCCCcccccccccHHHHHHHHHHH
Confidence 999999999864 4451 2233478999999988887653
No 4
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.20 E-value=16 Score=27.52 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=13.3
Q ss_pred ccchhhHHHhccCccc
Q 007920 284 HRVLIPLRAMFSNLVD 299 (585)
Q Consensus 284 ~~~m~pL~~~FPnl~~ 299 (585)
+..|.-|++|||++..
T Consensus 10 Ee~i~~LkeMFP~~D~ 25 (59)
T d1wgla_ 10 EEDLKAIQDMFPNMDQ 25 (59)
T ss_dssp HHHHHHHHHHCSSSCH
T ss_pred HHHHHHHHHHCCCCCH
Confidence 4568999999999854
No 5
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.14 E-value=15 Score=27.09 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=11.8
Q ss_pred cchhhHHHhccCcc
Q 007920 285 RVLIPLRAMFSNLV 298 (585)
Q Consensus 285 ~~m~pL~~~FPnl~ 298 (585)
..+.-|++|||++.
T Consensus 14 e~~~~Lk~MFP~~D 27 (54)
T d1mn3a_ 14 DTLNTLQNMFPDMD 27 (54)
T ss_dssp HHHHHHHHHCTTSC
T ss_pred HHHHHHHHHCCCCC
Confidence 45889999999984
No 6
>d1sfsa_ c.1.8.8 (A:) Unnamed hypothetical protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=14.56 E-value=33 Score=31.32 Aligned_cols=19 Identities=16% Similarity=0.443 Sum_probs=16.0
Q ss_pred HHHhcCCCCCceEEEeccc
Q 007920 261 LLRAMGYPPKTIIYLAGSE 279 (585)
Q Consensus 261 ~LrALGf~~~T~IYlAaGe 279 (585)
.=++||||..|.||++=-.
T Consensus 84 ~A~~lGfp~gt~Iy~dve~ 102 (213)
T d1sfsa_ 84 HARRLGIPKNKLLFANIED 102 (213)
T ss_dssp HHHHTTCCSSCEEEEECCT
T ss_pred HHHHcCCCCCCEEEEEecc
Confidence 4578999999999998754
No 7
>d1r03a_ a.25.1.1 (A:) (Apo)ferritin {Human (Homo sapiens), mitocondial isoform [TaxId: 9606]}
Probab=14.18 E-value=23 Score=30.27 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=37.4
Q ss_pred hhhccccccccchHHHHHHHHHHHH-HHhcCCCeEEeccchhhhhhhhhccccccchhHHHHHHHH
Q 007920 160 RCRVAFHALQFRPEIEILGRLMVER-LRAWGQPFLAYHPGLVRETLAYHGCAELFQDVHTELIQYR 224 (585)
Q Consensus 160 RCrvnf~ALrF~p~Ie~LG~~LV~R-LR~~g~pyIALHLRfEkDMLAfSgC~~~~~~~~~el~~~r 224 (585)
|||-|| .|++++.-+..++. |.+. --|+++=-=|..|.+++.||+..|.....|..++-
T Consensus 2 ~~r~n~-----~~e~e~aLN~qi~~El~as-~~Yl~ma~~f~~~~~~l~g~a~~f~~~a~EE~~Ha 61 (171)
T d1r03a_ 2 RVRQNF-----HPDSEAAINRQINLELYAS-YVYLSMAYYFSRDDVALNNFSRYFLHQSREETEHA 61 (171)
T ss_dssp TTCCSC-----CHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCC-----CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 567666 58888766665554 4443 35655444466688888899877776555544443
No 8
>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}
Probab=13.07 E-value=55 Score=27.04 Aligned_cols=51 Identities=16% Similarity=0.073 Sum_probs=35.0
Q ss_pred CCCCCCHHHHHHHH----HhcCCCCCceEEEecccccCCccchhhHHHhccCccc
Q 007920 249 GSCPLMPEEVGILL----RAMGYPPKTIIYLAGSETFGGHRVLIPLRAMFSNLVD 299 (585)
Q Consensus 249 G~CPLTPeEVgl~L----rALGf~~~T~IYlAaGeIyGG~~~m~pL~~~FPnl~~ 299 (585)
=+||=-|.|+++|+ |.-|-..++.|..+......+......+..++..+..
T Consensus 45 ~kCpgAP~e~a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (141)
T d1fcda2 45 FRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTE 99 (141)
T ss_dssp CSSTTHHHHHHHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHHCSTTS
T ss_pred ccCCchHHHHHHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHHHHHHH
Confidence 48999999999886 7779999998887776643333223344555555443
No 9
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=12.62 E-value=41 Score=25.43 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=19.5
Q ss_pred hccCCCCCCCHHHHHHHHHhcCCC
Q 007920 245 RRDNGSCPLMPEEVGILLRAMGYP 268 (585)
Q Consensus 245 ~R~~G~CPLTPeEVgl~LrALGf~ 268 (585)
.+..|.. ++++|+.-+|+.|||.
T Consensus 13 ~~~lG~~-i~~~~i~~~L~~Lg~~ 35 (75)
T d1jjcb2 13 NRLLGTS-YPEAEQIAILKRLGCR 35 (75)
T ss_dssp HHHHTCC-CCHHHHHHHHHHTTCE
T ss_pred HHHhCCC-CCHHHHHHHHHHcCCc
Confidence 4556666 9999999999999996
No 10
>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}
Probab=10.72 E-value=54 Score=23.22 Aligned_cols=24 Identities=13% Similarity=0.025 Sum_probs=19.5
Q ss_pred CHHHHHHHHHhcCCCCCceEEEec
Q 007920 254 MPEEVGILLRAMGYPPKTIIYLAG 277 (585)
Q Consensus 254 TPeEVgl~LrALGf~~~T~IYlAa 277 (585)
||+||+-.|+.+|++.=..++...
T Consensus 5 s~~~V~~wL~~~gl~~y~~~F~~~ 28 (64)
T d2f3na1 5 SKFDVGDWLESIHLGEHRDRFEDH 28 (64)
T ss_dssp CHHHHHHHHHHTTCGGGHHHHHHT
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHC
Confidence 899999999999998766665443
Done!